Psyllid ID: psy8087
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 658 | 2.2.26 [Sep-21-2011] | |||||||
| Q2KJG3 | 559 | Asparagine--tRNA ligase, | yes | N/A | 0.539 | 0.635 | 0.610 | 1e-138 | |
| O43776 | 548 | Asparagine--tRNA ligase, | yes | N/A | 0.539 | 0.647 | 0.610 | 1e-137 | |
| Q4R4Z1 | 558 | Asparagine--tRNA ligase, | N/A | N/A | 0.539 | 0.636 | 0.607 | 1e-136 | |
| Q8BP47 | 559 | Asparagine--tRNA ligase, | yes | N/A | 0.539 | 0.635 | 0.6 | 1e-136 | |
| Q19722 | 545 | Asparagine--tRNA ligase, | yes | N/A | 0.530 | 0.640 | 0.512 | 1e-115 | |
| P38707 | 554 | Asparagine--tRNA ligase, | yes | N/A | 0.536 | 0.637 | 0.510 | 1e-110 | |
| Q6BU46 | 552 | Asparagine--tRNA ligase, | yes | N/A | 0.533 | 0.635 | 0.507 | 1e-108 | |
| O94567 | 568 | Probable asparagine--tRNA | yes | N/A | 0.537 | 0.623 | 0.486 | 1e-103 | |
| P10723 | 548 | Asparagine--tRNA ligase, | N/A | N/A | 0.534 | 0.642 | 0.473 | 1e-101 | |
| Q554D9 | 653 | Asparagine--tRNA ligase, | yes | N/A | 0.536 | 0.540 | 0.465 | 1e-100 |
| >sp|Q2KJG3|SYNC_BOVIN Asparagine--tRNA ligase, cytoplasmic OS=Bos taurus GN=NARS PE=2 SV=3 | Back alignment and function desciption |
|---|
Score = 491 bits (1264), Expect = e-138, Method: Compositional matrix adjust.
Identities = 241/395 (61%), Positives = 291/395 (73%), Gaps = 40/395 (10%)
Query: 86 GKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEENMK------ 139
GK LMF+ LRDG+GF+QCVL+D LCQ + ++LSTESSV G + P+
Sbjct: 152 GKNLMFLVLRDGTGFLQCVLSDDLCQCYNGVVLSTESSVAVYGVLNLTPKGKQAPGGHEL 211
Query: 140 ----------------VQLIHPSSYAIVWLGD---LKQGGYPPEVSLAN----------- 169
LI+ S V L + + +G ++ A
Sbjct: 212 SCDFWELIGLAPAGGADNLINEESDVDVQLNNRHMMIRGENMSKILKARSVITRCFRDHF 271
Query: 170 ---GIAKVTPPTLVQTQVEGGSTLFSLNFFGEPAYLTQSSQLYLETCLPALGDVYCIAQS 226
G ++TPPTLVQTQVEGG+TLF L++FGE AYLTQSSQLYLETC+PALGDV+CIAQS
Sbjct: 272 FDRGYHEITPPTLVQTQVEGGATLFKLDYFGEEAYLTQSSQLYLETCIPALGDVFCIAQS 331
Query: 227 YRAENSRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMAT-HGDLVRQMNPN 285
YRAE SRTRRHLAEYTHVEAEC FLTF++LL++LEDL+CD VDRV+ + G++VR +NPN
Sbjct: 332 YRAEQSRTRRHLAEYTHVEAECPFLTFEELLNRLEDLVCDVVDRVLKSPAGNIVRDLNPN 391
Query: 286 FEPPARPFLRMNYADAIEYLRKHEIRKPDNTEYEFGEDIPEMPERKMTDQINRPIMLCRF 345
F+PP RPF RMNY+DAI +L++H I+K D T YEFGEDIPE PER MTD IN PI+LCRF
Sbjct: 392 FKPPKRPFKRMNYSDAIVWLKEHNIKKEDGTFYEFGEDIPEAPERLMTDTINEPILLCRF 451
Query: 346 PADIKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGIDPAPYY 405
P +IKSFYM +CPE+P LTESVDVL PNVGE++GGSMRIWD EE+LAGYKREGIDP PYY
Sbjct: 452 PVEIKSFYMQRCPEDPRLTESVDVLMPNVGEIVGGSMRIWDNEEILAGYKREGIDPTPYY 511
Query: 406 WYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRD 440
WYTDQRKYG+ PHGGYGLGLER L W+L++YH+RD
Sbjct: 512 WYTDQRKYGTCPHGGYGLGLERFLTWILDRYHIRD 546
|
Bos taurus (taxid: 9913) EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 2 |
| >sp|O43776|SYNC_HUMAN Asparagine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=NARS PE=1 SV=1 | Back alignment and function description |
|---|
Score = 489 bits (1259), Expect = e-137, Method: Compositional matrix adjust.
Identities = 241/395 (61%), Positives = 290/395 (73%), Gaps = 40/395 (10%)
Query: 86 GKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEENMK------ 139
GK LMF+ LRDG+G++QCVLAD LCQ + +LLSTESSV G + P+
Sbjct: 141 GKNLMFLVLRDGTGYLQCVLADELCQCYNGVLLSTESSVAVYGMLNLTPKGKQAPGGHEL 200
Query: 140 ----------------VQLIHPSSYAIVWLGD---LKQGGYPPEVSLAN----------- 169
LI+ S V L + + +G ++ A
Sbjct: 201 SCDFWELIGLAPAGGADNLINEESDVDVQLNNRHMMIRGENMSKILKARSMVTRCFRDHF 260
Query: 170 ---GIAKVTPPTLVQTQVEGGSTLFSLNFFGEPAYLTQSSQLYLETCLPALGDVYCIAQS 226
G +VTPPTLVQTQVEGG+TLF L++FGE A+LTQSSQLYLETCLPALGDV+CIAQS
Sbjct: 261 FDRGYYEVTPPTLVQTQVEGGATLFKLDYFGEEAFLTQSSQLYLETCLPALGDVFCIAQS 320
Query: 227 YRAENSRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMAT-HGDLVRQMNPN 285
YRAE SRTRRHLAEYTHVEAEC FLTFDDLL++LEDL+CD VDR++ + G +V ++NPN
Sbjct: 321 YRAEQSRTRRHLAEYTHVEAECPFLTFDDLLNRLEDLVCDVVDRILKSPAGSIVHELNPN 380
Query: 286 FEPPARPFLRMNYADAIEYLRKHEIRKPDNTEYEFGEDIPEMPERKMTDQINRPIMLCRF 345
F+PP RPF RMNY+DAI +L++H+++K D T YEFGEDIPE PER MTD IN PI+LCRF
Sbjct: 381 FQPPKRPFKRMNYSDAIVWLKEHDVKKEDGTFYEFGEDIPEAPERLMTDTINEPILLCRF 440
Query: 346 PADIKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGIDPAPYY 405
P +IKSFYM +CPE+ LTESVDVL PNVGE++GGSMRI+D EE+LAGYKREGIDP PYY
Sbjct: 441 PVEIKSFYMQRCPEDSRLTESVDVLMPNVGEIVGGSMRIFDSEEILAGYKREGIDPTPYY 500
Query: 406 WYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRD 440
WYTDQRKYG+ PHGGYGLGLER L W+LN+YH+RD
Sbjct: 501 WYTDQRKYGTCPHGGYGLGLERFLTWILNRYHIRD 535
|
Homo sapiens (taxid: 9606) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 |
| >sp|Q4R4Z1|SYNC_MACFA Asparagine--tRNA ligase, cytoplasmic OS=Macaca fascicularis GN=NARS PE=2 SV=1 | Back alignment and function description |
|---|
Score = 487 bits (1253), Expect = e-136, Method: Compositional matrix adjust.
Identities = 240/395 (60%), Positives = 288/395 (72%), Gaps = 40/395 (10%)
Query: 86 GKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEENMK------ 139
GK LMF+ LRDG+G++QCVLAD LCQ + +LLSTESSV G + P+
Sbjct: 151 GKNLMFLVLRDGTGYLQCVLADELCQCYNGVLLSTESSVAVYGMLNLTPKGKQAPGGHEL 210
Query: 140 ----------------VQLIHPSSYAIVWLGD---LKQGGYPPEVSLAN----------- 169
LI+ S V L + + +G ++ A
Sbjct: 211 SCDFWELIGLAPAGGADNLINEESDVDVQLNNRHMMIRGENMSKILKARSMITRCFRDHF 270
Query: 170 ---GIAKVTPPTLVQTQVEGGSTLFSLNFFGEPAYLTQSSQLYLETCLPALGDVYCIAQS 226
G ++TPP+LVQTQVEGG+TLF LN+FGE A+LTQSSQLYLETCLPALGDV+CIAQS
Sbjct: 271 FDRGYHEITPPSLVQTQVEGGATLFKLNYFGEEAFLTQSSQLYLETCLPALGDVFCIAQS 330
Query: 227 YRAENSRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMAT-HGDLVRQMNPN 285
YRAE SRTRRHLAEYTHVEAEC LTFDDLL++LEDL+CD VDR++ + G +V ++NPN
Sbjct: 331 YRAEQSRTRRHLAEYTHVEAECPLLTFDDLLNRLEDLVCDVVDRILKSPAGSIVYELNPN 390
Query: 286 FEPPARPFLRMNYADAIEYLRKHEIRKPDNTEYEFGEDIPEMPERKMTDQINRPIMLCRF 345
F+PP RPF RMNY+DAI +L++H+I+K D T YEFGEDIPE PER MTD IN PI+LCRF
Sbjct: 391 FQPPKRPFKRMNYSDAIIWLKEHDIKKEDGTFYEFGEDIPEAPERLMTDTINEPILLCRF 450
Query: 346 PADIKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGIDPAPYY 405
P +IKSFYM +CPE+ LTESVDVL PNVGE++GGSMR D EE+LAGYKREGIDPAPYY
Sbjct: 451 PVEIKSFYMQRCPEDSCLTESVDVLMPNVGEIVGGSMRTSDAEEILAGYKREGIDPAPYY 510
Query: 406 WYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRD 440
WYTDQRKYG+ PHGGYGLGLER L W+LN+YH+RD
Sbjct: 511 WYTDQRKYGTCPHGGYGLGLERFLTWILNRYHIRD 545
|
Macaca fascicularis (taxid: 9541) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 |
| >sp|Q8BP47|SYNC_MOUSE Asparagine--tRNA ligase, cytoplasmic OS=Mus musculus GN=Nars PE=1 SV=2 | Back alignment and function description |
|---|
Score = 484 bits (1247), Expect = e-136, Method: Compositional matrix adjust.
Identities = 237/395 (60%), Positives = 289/395 (73%), Gaps = 40/395 (10%)
Query: 86 GKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEENMK------ 139
GK LMF+ LRDG+G++QCVL+D LCQ + ++LSTESSV G + P+
Sbjct: 152 GKNLMFLVLRDGTGYLQCVLSDDLCQCYNGVVLSTESSVAVYGTLNLTPKGKQAPGGHEL 211
Query: 140 ----------------VQLIHPSSYAIVWLGD---LKQGGYPPEVSLAN----------- 169
LI+ S V L + + +G ++ A
Sbjct: 212 SCDFWELVGLAPAGGADNLINEESDVDVQLNNRHMMIRGENMSKILKARSMITRCFRDHF 271
Query: 170 ---GIAKVTPPTLVQTQVEGGSTLFSLNFFGEPAYLTQSSQLYLETCLPALGDVYCIAQS 226
G +VT PTLVQTQVEGG+TLF L++FGE A+LTQSSQLYLETCLPALGDV+CIAQS
Sbjct: 272 FDRGYCEVTTPTLVQTQVEGGATLFKLDYFGEEAFLTQSSQLYLETCLPALGDVFCIAQS 331
Query: 227 YRAENSRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMAT-HGDLVRQMNPN 285
YRAE SRTRRHLAE+THVEAEC FLTF+DLL++LEDL+CD VDRV+ + +V ++NPN
Sbjct: 332 YRAEQSRTRRHLAEFTHVEAECPFLTFEDLLNRLEDLVCDVVDRVLKSPVASIVYELNPN 391
Query: 286 FEPPARPFLRMNYADAIEYLRKHEIRKPDNTEYEFGEDIPEMPERKMTDQINRPIMLCRF 345
F+PP RPF RMNY+DAIE+L++H+++K D T YEFG+DIPE PER MTD IN PI+LCRF
Sbjct: 392 FKPPKRPFRRMNYSDAIEWLKEHDVKKEDGTFYEFGDDIPEAPERLMTDTINEPILLCRF 451
Query: 346 PADIKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGIDPAPYY 405
P +IKSFYM +CPE+P LTESVDVL PNVGE++GGSMR WD EE+L GYKREGIDPAPYY
Sbjct: 452 PVEIKSFYMQRCPEDPRLTESVDVLMPNVGEIVGGSMRSWDSEEILEGYKREGIDPAPYY 511
Query: 406 WYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRD 440
WYTDQRKYG+ PHGGYGLGLER L W+LN+YH+RD
Sbjct: 512 WYTDQRKYGTCPHGGYGLGLERFLSWILNRYHIRD 546
|
Mus musculus (taxid: 10090) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 |
| >sp|Q19722|SYNC_CAEEL Asparagine--tRNA ligase, cytoplasmic OS=Caenorhabditis elegans GN=nrs-1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 414 bits (1065), Expect = e-115, Method: Compositional matrix adjust.
Identities = 206/402 (51%), Positives = 265/402 (65%), Gaps = 53/402 (13%)
Query: 86 GKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQF------------------- 126
GK LMF+ LRDG GF+QCVL D LCQ+ A+ LSTE+SVQ
Sbjct: 137 GKSLMFLVLRDGYGFLQCVLNDKLCQSYDAVTLSTETSVQVYGIIKALPDGKSAPDGHEL 196
Query: 127 ------------RGRIEKVPEENMKVQLIHPSSYAIVWLGDLKQGGYPPEV--------- 165
G I+ V E+ V ++ + + ++ +G +
Sbjct: 197 TVDYWEVIGKAPAGGIDNVLNESAGVDVMLDNRHLVI------RGENASRILRIRAAATR 250
Query: 166 -----SLANGIAKVTPPTLVQTQVEGGSTLFSLNFFGEPAYLTQSSQLYLETCLPALGDV 220
A G +V PPTLVQTQVEGGSTLF L+++GEPAYLTQSSQLYLETC ALGDV
Sbjct: 251 AMRDHFFAAGYTEVAPPTLVQTQVEGGSTLFGLDYYGEPAYLTQSSQLYLETCNAALGDV 310
Query: 221 YCIAQSYRAENSRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMA--THGDL 278
YCI+QSYRAE SRTRRHL+EY HVEAECAF+TFD L+D++E L+CDTVDR++A L
Sbjct: 311 YCISQSYRAEKSRTRRHLSEYQHVEAECAFITFDQLMDRIEALVCDTVDRLLADPVTKSL 370
Query: 279 VRQMNPNFEPPARPFLRMNYADAIEYLRKHEIRKPDNTEYEFGEDIPEMPERKMTDQINR 338
+ +NP ++ PARPF RM Y +AIE+L+K+++R ++ +GEDI E ER+MTD I
Sbjct: 371 IEFVNPGYKAPARPFKRMPYKEAIEWLQKNDVRNEMGEKFVYGEDIAEAAERRMTDTIGV 430
Query: 339 PIMLCRFPADIKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREG 398
PI+L RFP IK+FYM +C ++ LTESVD+L P VGE++GGSMRIW ++LLA +++ G
Sbjct: 431 PILLNRFPHGIKAFYMPRCADDNELTESVDLLMPGVGEIVGGSMRIWKEDQLLAAFEKGG 490
Query: 399 IDPAPYYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRD 440
+D YYWY DQRKYGS PHGGYGLGLER +CWL + H+RD
Sbjct: 491 LDSKNYYWYMDQRKYGSVPHGGYGLGLERFICWLTDTNHIRD 532
|
Caenorhabditis elegans (taxid: 6239) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 |
| >sp|P38707|SYNC_YEAST Asparagine--tRNA ligase, cytoplasmic OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DED81 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 400 bits (1028), Expect = e-110, Method: Compositional matrix adjust.
Identities = 203/398 (51%), Positives = 259/398 (65%), Gaps = 45/398 (11%)
Query: 87 KGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEENMK---VQLI 143
K ++FV LRDGSGFIQCVL+ L + L L+ ES+V G I K+PE V+L
Sbjct: 145 KKVIFVVLRDGSGFIQCVLSGDLALAQQTLDLTLESTVTLYGTIVKLPEGKTAPGGVEL- 203
Query: 144 HPSSYAIVWLG---------DLKQGGYPP------------------------------E 164
+ Y +V L + +G P
Sbjct: 204 NVDYYEVVGLAPGGEDSFTNKIAEGSDPSLLLDQRHLALRGDALSAVMKVRAALLKSVRR 263
Query: 165 VSLANGIAKVTPPTLVQTQVEGGSTLFSLNFFGEPAYLTQSSQLYLETCLPALGDVYCIA 224
V + +VTPP +VQTQVEGGSTLF +N++GE AYLTQSSQLYLETCL +LGDVY I
Sbjct: 264 VYDEEHLTEVTPPCMVQTQVEGGSTLFKMNYYGEEAYLTQSSQLYLETCLASLGDVYTIQ 323
Query: 225 QSYRAENSRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMA--THGDLVRQM 282
+S+RAE S TRRHL+EYTH+EAE AFLTFDDLL +E LI +V V+ G LV+Q+
Sbjct: 324 ESFRAEKSHTRRHLSEYTHIEAELAFLTFDDLLQHIETLIVKSVQYVLEDPIAGPLVKQL 383
Query: 283 NPNFEPPARPFLRMNYADAIEYLRKHEIRKPDNTEYEFGEDIPEMPERKMTDQINRPIML 342
NPNF+ P PF+R+ Y DAI +L +H+I+ + +++FG+DI E ERKMTD I PI L
Sbjct: 384 NPNFKAPKAPFMRLQYKDAITWLNEHDIKNEEGEDFKFGDDIAEAAERKMTDTIGVPIFL 443
Query: 343 CRFPADIKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGIDPA 402
RFP +IKSFYM +C ++P +TESVDVL PNVGE+ GGSMRI D +EL+AG+KREGID
Sbjct: 444 TRFPVEIKSFYMKRCSDDPRVTESVDVLMPNVGEITGGSMRIDDMDELMAGFKREGIDTD 503
Query: 403 PYYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRD 440
YYW+ DQRKYG+ PHGGYG+G ER+L WL +++ VRD
Sbjct: 504 AYYWFIDQRKYGTCPHGGYGIGTERILAWLCDRFTVRD 541
|
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 |
| >sp|Q6BU46|SYNC_DEBHA Asparagine--tRNA ligase, cytoplasmic OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=DED81 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 391 bits (1005), Expect = e-108, Method: Compositional matrix adjust.
Identities = 203/400 (50%), Positives = 259/400 (64%), Gaps = 49/400 (12%)
Query: 87 KGLMFVTLRDGSGFIQCVLADIL--CQTEHALLLSTESSVQFRGRIEKVPEENMK---VQ 141
KGL F+TLRDG+GFIQC+L L C+T H L L ES+V +G I K+PE V+
Sbjct: 143 KGLGFITLRDGTGFIQCILTGDLAKCKTTHELTL--ESTVTIKGVINKLPEGKSAPGGVE 200
Query: 142 LIHPSSYAIVWLGDLKQGGYPPEV--------------------SLA------------- 168
L Y +V L + + +V SL+
Sbjct: 201 L-KVDYYEVVGLAPSGEEAFSNKVQENADPSLLLDQRHLALRGESLSAVMKVRSTLLQAI 259
Query: 169 ------NGIAKVTPPTLVQTQVEGGSTLFSLNFFGEPAYLTQSSQLYLETCLPALGDVYC 222
G+ +VTPP +VQTQVEGGSTLF ++++GE AYLTQSSQLYLETCLPALGDV+C
Sbjct: 260 RRFFAEEGLLEVTPPCMVQTQVEGGSTLFKMDYYGEEAYLTQSSQLYLETCLPALGDVFC 319
Query: 223 IAQSYRAENSRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMA--THGDLVR 280
+ +S+RAE S TRRHL+EYTH+E+E F+ FDDLL LE LI V V+ G L++
Sbjct: 320 VQESFRAEKSHTRRHLSEYTHIESELGFIEFDDLLTHLERLITYVVKYVVEDPVAGPLIK 379
Query: 281 QMNPNFEPPARPFLRMNYADAIEYLRKHEIRKPDNTEYEFGEDIPEMPERKMTDQINRPI 340
Q+NPNF PP PF RM Y A+++L +H I D +++FG+DI E ERKMTD I PI
Sbjct: 380 QLNPNFVPPQMPFKRMEYIHALDWLNEHGIPNEDGEKFKFGDDIAEAAERKMTDTIGVPI 439
Query: 341 MLCRFPADIKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGID 400
+L RFP +IKSFYM KC ++P +TESVDVL P VGE+ GGSMR +D +EL+A KREG+D
Sbjct: 440 LLIRFPVEIKSFYMQKCADDPRVTESVDVLMPTVGEITGGSMRTYDNDELVAAIKREGLD 499
Query: 401 PAPYYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRD 440
YYW+TDQRKYG+ PHGGYGLG ER+L WL +++ VRD
Sbjct: 500 LDSYYWFTDQRKYGTCPHGGYGLGTERILAWLCDRFTVRD 539
|
Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) (taxid: 284592) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 |
| >sp|O94567|SYNC_SCHPO Probable asparagine--tRNA ligase, cytoplasmic OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nrs1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 375 bits (964), Expect = e-103, Method: Compositional matrix adjust.
Identities = 194/399 (48%), Positives = 261/399 (65%), Gaps = 45/399 (11%)
Query: 87 KGLMFVTLRDGSGFIQCVLA-DILCQTEHALL-LSTESSVQFRGRIEKVPEENMK----- 139
KG++F+ LRDG+GF+QCVL+ + + + + L ES+V G I+++PE
Sbjct: 157 KGIIFIILRDGTGFLQCVLSGKVYDRASYDFINLGPESTVCLYGVIKELPEGKSAPGNHE 216
Query: 140 -----VQLIHPS-----------------SYAIVWLGDLKQGGYPPEV------------ 165
Q++H + SY + + +G V
Sbjct: 217 LVVDYYQILHAAPTGEEAFTNRLNAEAEPSYLLDQRHLVIRGETASSVLKVRARALRAMR 276
Query: 166 -SLAN-GIAKVTPPTLVQTQVEGGSTLFSLNFFGEPAYLTQSSQLYLETCLPALGDVYCI 223
+ N + +VTPP +VQTQVEGG+TLF N++G+ AYLTQSSQLYLE LPALG VY I
Sbjct: 277 DTFENLKMTEVTPPCMVQTQVEGGATLFKFNYYGQDAYLTQSSQLYLEAALPALGSVYTI 336
Query: 224 AQSYRAENSRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMA--THGDLVRQ 281
+S+RAE S TRRHL+E+THVE E F+ F + L+ +E+ IC T+DR++ L++Q
Sbjct: 337 QESFRAEKSLTRRHLSEFTHVEFELPFVNFGEFLEIIEEFICQTIDRLLDDPIATPLIKQ 396
Query: 282 MNPNFEPPARPFLRMNYADAIEYLRKHEIRKPDNTEYEFGEDIPEMPERKMTDQINRPIM 341
+NP+F P+RPF+R++Y DAI+YL +H I P+ +++FG+DI E ERKMTDQINRPI
Sbjct: 397 LNPDFVKPSRPFMRLSYEDAIKYLNEHNILTPEGEQHKFGDDIAEAAERKMTDQINRPIF 456
Query: 342 LCRFPADIKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGIDP 401
L FP +IKSFYM + + P LTESVD L PNVGE++GGSMRI D +ELLA YKREGIDP
Sbjct: 457 LTYFPLEIKSFYMKRVVDRPELTESVDCLMPNVGEIVGGSMRISDIQELLAAYKREGIDP 516
Query: 402 APYYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRD 440
APYYW+T+QRKYG+T HGG GLGLER L WL ++Y VR+
Sbjct: 517 APYYWFTEQRKYGTTEHGGCGLGLERFLAWLCDRYTVRE 555
|
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 |
| >sp|P10723|SYNC_BRUMA Asparagine--tRNA ligase, cytoplasmic OS=Brugia malayi PE=1 SV=1 | Back alignment and function description |
|---|
Score = 368 bits (944), Expect = e-101, Method: Compositional matrix adjust.
Identities = 189/399 (47%), Positives = 248/399 (62%), Gaps = 47/399 (11%)
Query: 86 GKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFR------------------ 127
GK LMF LRDG+GF+Q +L D LCQT AL ++TE +V+
Sbjct: 140 GKSLMFFILRDGTGFLQVLLMDKLCQTYDALTVNTECTVEIYGAIKEVPEGKEAPNGHEL 199
Query: 128 -------------GRIEKVPEENMKVQLIHPSSYAIVWLGDLKQGGYPP--------EVS 166
G I+ V E V + + + ++ + E
Sbjct: 200 IADFWKIIGNAPPGGIDNVLNEEASVDKMLDNRHLVIRGENAAALLRLRAAATRAMREHF 259
Query: 167 LANGIAKVTPPTLVQTQVEGGSTLFSLNFFGEPAYLTQSSQLYLETCLPALGDVY---CI 223
G +V PPTLVQTQVEGGSTLF+L++FGE ++LTQSSQLYLETC+P LGDV+ +
Sbjct: 260 YNAGYLEVAPPTLVQTQVEGGSTLFNLDYFGEQSFLTQSSQLYLETCIPTLGDVFLHCSV 319
Query: 224 AQSYRAENSRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATH--GDLVRQ 281
Q + +S T LAEY HVEAEC F+T DDL++K+E+L+CDTVDR++A L+
Sbjct: 320 LQGGKISHSST---LAEYAHVEAECPFITLDDLMEKIEELVCDTVDRLLADEEAKKLLEH 376
Query: 282 MNPNFEPPARPFLRMNYADAIEYLRKHEIRKPDNTEYEFGEDIPEMPERKMTDQINRPIM 341
+NP F+PP RPFLRM Y DAI++L++H + + +GEDI E ER MTD IN+PI+
Sbjct: 377 INPKFQPPERPFLRMEYKDAIKWLQEHNVENEFGNTFTYGEDIAEAAERFMTDTINKPIL 436
Query: 342 LCRFPADIKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGIDP 401
L RFP++IK+FYM + ++ LTESVD+L P VGE++GGSMRIW +EL +K IDP
Sbjct: 437 LNRFPSEIKAFYMQRDAQDNTLTESVDLLMPGVGEIVGGSMRIWKFDELSKAFKNVEIDP 496
Query: 402 APYYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRD 440
PYYWY DQR YG+ PHGGYGLGLER +CWL N H+RD
Sbjct: 497 KPYYWYLDQRLYGTCPHGGYGLGLERFICWLTNTNHIRD 535
|
Potentially protective antigen in lymphatic filariasis. Brugia malayi (taxid: 6279) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 |
| >sp|Q554D9|SYNC_DICDI Asparagine--tRNA ligase, cytoplasmic OS=Dictyostelium discoideum GN=asnS1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 368 bits (944), Expect = e-100, Method: Compositional matrix adjust.
Identities = 185/397 (46%), Positives = 259/397 (65%), Gaps = 44/397 (11%)
Query: 87 KGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEENMKV------ 140
K ++F+ LRDG+GF+QCVL+ L L E++V+ G + +P + K
Sbjct: 245 KKIVFLELRDGTGFLQCVLSGDLVHPSIIDKLLREATVKIVGTL-VIPPADKKCPGGVEL 303
Query: 141 -----QLIHPSSYAIVWLGD--------------LKQGGYPPEVS--------------L 167
+L+ PS+ + + + + +G +
Sbjct: 304 QADYWELLGPSNADLEGVINQESNVDHLFDQRHIMMRGTRASSIMKIRSLCLFAFRQHFF 363
Query: 168 ANGIAKVTPPTLVQTQVEGGSTLFSLNFFGEPAYLTQSSQLYLETCLPALGDVYCIAQSY 227
N +VTPPTLV T EGGS LF++++FG+PAYLTQSSQLYLET LP LGD + I QSY
Sbjct: 364 ENHYMEVTPPTLVNTYCEGGSELFTVDYFGKPAYLTQSSQLYLETMLPVLGDNFTITQSY 423
Query: 228 RAENSRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGDLVRQMNPNFE 287
RAE +RTRRHL E+ H+EAEC F+T+++L D++E L+ D +++ +L+ +NP+F+
Sbjct: 424 RAEKARTRRHLTEFLHLEAECPFITYEELQDRIEFLVVDVCEKLFKMDPELILSVNPDFK 483
Query: 288 PPARPFLRMNYADAIEYLRKHEIRKP--DNTE--YEFGEDIPEMPERKMTDQINRPIMLC 343
P RPF+RMNY+DAIEY +K+ I+K D TE +EFG+DIPE ER+M DQI PI LC
Sbjct: 484 VPKRPFMRMNYSDAIEYCKKNGIQKKLEDGTEVDFEFGDDIPEAQERRMNDQIGEPIFLC 543
Query: 344 RFPADIKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGIDPAP 403
RFPA++K+FYM++CPE+ LTES+D+L P VGE++GGSMRI D EL+A YK+ G+D
Sbjct: 544 RFPAEMKAFYMARCPEDRTLTESLDLLMPGVGEIVGGSMRISDFNELVAAYKKAGLDTDE 603
Query: 404 YYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRD 440
YYW+TDQRKYG+T HGGYGLG+ER L W+L + H+R+
Sbjct: 604 YYWFTDQRKYGTTQHGGYGLGVERFLTWMLKEEHIRN 640
|
Dictyostelium discoideum (taxid: 44689) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 658 | ||||||
| 332376021 | 552 | unknown [Dendroctonus ponderosae] | 0.539 | 0.643 | 0.625 | 1e-144 | |
| 91091536 | 550 | PREDICTED: similar to Asparaginyl-tRNA s | 0.537 | 0.643 | 0.611 | 1e-140 | |
| 289740395 | 558 | asparaginyl-tRNA synthetase [Glossina mo | 0.539 | 0.636 | 0.625 | 1e-139 | |
| 383855496 | 556 | PREDICTED: asparagine--tRNA ligase, cyto | 0.531 | 0.629 | 0.625 | 1e-139 | |
| 225581052 | 557 | GA10495 [Drosophila miranda] | 0.537 | 0.635 | 0.606 | 1e-137 | |
| 193666902 | 560 | PREDICTED: asparaginyl-tRNA synthetase, | 0.537 | 0.632 | 0.608 | 1e-137 | |
| 440892048 | 559 | Asparaginyl-tRNA synthetase, cytoplasmic | 0.536 | 0.631 | 0.604 | 1e-137 | |
| 405953092 | 558 | Asparaginyl-tRNA synthetase, cytoplasmic | 0.537 | 0.634 | 0.595 | 1e-137 | |
| 392884348 | 560 | asparaginyl-tRNA synthetase, cytoplasmic | 0.531 | 0.625 | 0.61 | 1e-137 | |
| 387914232 | 560 | asparaginyl-tRNA synthetase-like protein | 0.531 | 0.625 | 0.607 | 1e-136 |
| >gi|332376021|gb|AEE63151.1| unknown [Dendroctonus ponderosae] | Back alignment and taxonomy information |
|---|
Score = 517 bits (1331), Expect = e-144, Method: Compositional matrix adjust.
Identities = 247/395 (62%), Positives = 301/395 (76%), Gaps = 40/395 (10%)
Query: 86 GKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEENMK--VQLI 143
GK LMF+TLRDGSGF+QC+L++ LC T +AL+L TES+V G +++VPE +
Sbjct: 145 GKNLMFITLRDGSGFLQCILSNQLCSTYNALVLQTESTVLLFGTLKQVPEGKTAPGGHEL 204
Query: 144 HPSSYAIVWLG------DLKQGGYPPEVSLAN---------------------------- 169
H + ++ L L P+V N
Sbjct: 205 HVDYWELIGLAPPGGADSLLNEEALPDVQAENRHIMIRGENTSKVLRMRSVLLQAFRDHY 264
Query: 170 ---GIAKVTPPTLVQTQVEGGSTLFSLNFFGEPAYLTQSSQLYLETCLPALGDVYCIAQS 226
G +VTPP++VQTQVEGGSTLF L++FGE AYLTQSSQLYLETCLP++GDVYCIA+S
Sbjct: 265 LDRGYCEVTPPSIVQTQVEGGSTLFKLDYFGEEAYLTQSSQLYLETCLPSMGDVYCIAES 324
Query: 227 YRAENSRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMAT-HGDLVRQMNPN 285
+RAE SRTRRHLAEYTHVEAEC F++F+DLLD+LEDLICD VDRV+ + +G++VR++NPN
Sbjct: 325 FRAEQSRTRRHLAEYTHVEAECPFISFNDLLDRLEDLICDVVDRVLKSPYGEIVRELNPN 384
Query: 286 FEPPARPFLRMNYADAIEYLRKHEIRKPDNTEYEFGEDIPEMPERKMTDQINRPIMLCRF 345
F+ P RPF+RMNY+DAI+YL++H I K D + YEFGEDIPEMPERKMTD+IN+PIMLCRF
Sbjct: 385 FQVPTRPFMRMNYSDAIDYLKEHNITKEDGSFYEFGEDIPEMPERKMTDEINKPIMLCRF 444
Query: 346 PADIKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGIDPAPYY 405
PA+IKSFYMSKCPE+ LTESVDVL PNVGE++GGSMRIWD EELL GYKREGIDPAPY+
Sbjct: 445 PANIKSFYMSKCPEDVRLTESVDVLLPNVGEIVGGSMRIWDSEELLEGYKREGIDPAPYF 504
Query: 406 WYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRD 440
WYTDQRKYG+ PHGGYGLGLER LCWLLN+YH+R+
Sbjct: 505 WYTDQRKYGTCPHGGYGLGLERFLCWLLNRYHIRE 539
|
Source: Dendroctonus ponderosae Species: Dendroctonus ponderosae Genus: Dendroctonus Family: Curculionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|91091536|ref|XP_970641.1| PREDICTED: similar to Asparaginyl-tRNA synthetase CG10687-PA [Tribolium castaneum] gi|270000923|gb|EEZ97370.1| hypothetical protein TcasGA2_TC011193 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 504 bits (1299), Expect = e-140, Method: Compositional matrix adjust.
Identities = 242/396 (61%), Positives = 298/396 (75%), Gaps = 42/396 (10%)
Query: 86 GKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPE---------- 135
GK LMF+TLRDG+GF+Q VL D LCQT +AL+LSTESSV G ++KVPE
Sbjct: 143 GKNLMFITLRDGTGFLQSVLTDKLCQTYNALVLSTESSVLLYGSLKKVPEGKTAPGGHEL 202
Query: 136 ------------------------------ENMKVQLIHPSSYAIVWLGDLKQGGYPPEV 165
EN + + ++ I+ + + +
Sbjct: 203 AVDYWELVGLAPPGGADSILNEQALPDVQAENRHIMIRGENTSKILRMRSVLLQAFRDHY 262
Query: 166 SLANGIAKVTPPTLVQTQVEGGSTLFSLNFFGEPAYLTQSSQLYLETCLPALGDVYCIAQ 225
L G +VTPP++VQTQ EGGSTLF +++FGE AYLTQSSQLYLETCLP++GDV+CIA+
Sbjct: 263 -LDRGYCEVTPPSIVQTQCEGGSTLFKMDYFGEEAYLTQSSQLYLETCLPSMGDVFCIAE 321
Query: 226 SYRAENSRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMAT-HGDLVRQMNP 284
S+RAE SRTRRHLAEYTHVEAEC F++F+DLLD+LEDLICD VDRV+ + +GD+V ++NP
Sbjct: 322 SFRAEQSRTRRHLAEYTHVEAECPFISFNDLLDRLEDLICDVVDRVLKSPYGDIVHELNP 381
Query: 285 NFEPPARPFLRMNYADAIEYLRKHEIRKPDNTEYEFGEDIPEMPERKMTDQINRPIMLCR 344
+F+ P RPFLRMNY+DAI+YL+K+ I K D + YEFGEDIPEMPERKMTDQIN+PIMLCR
Sbjct: 382 DFQVPTRPFLRMNYSDAIDYLKKNNITKEDGSFYEFGEDIPEMPERKMTDQINKPIMLCR 441
Query: 345 FPADIKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGIDPAPY 404
FPA+IKSFYMSKCPE+ LTESVDVL PNVGE++GGSMRI + EEL+ GYKREGIDP PY
Sbjct: 442 FPANIKSFYMSKCPEDARLTESVDVLLPNVGEIVGGSMRIHNLEELMDGYKREGIDPTPY 501
Query: 405 YWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRD 440
+WYTDQRKYG+ PHGGYGLGLER +CWLLN+YH+R+
Sbjct: 502 FWYTDQRKYGTCPHGGYGLGLERFVCWLLNRYHIRE 537
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|289740395|gb|ADD18945.1| asparaginyl-tRNA synthetase [Glossina morsitans morsitans] | Back alignment and taxonomy information |
|---|
Score = 503 bits (1294), Expect = e-139, Method: Compositional matrix adjust.
Identities = 247/395 (62%), Positives = 292/395 (73%), Gaps = 40/395 (10%)
Query: 86 GKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEENMK--VQLI 143
GKGL+F+TLRDG+GF+QCVL D LCQT AL L+TESSVQ G +++VPE +
Sbjct: 151 GKGLIFITLRDGTGFLQCVLTDRLCQTYDALTLTTESSVQLFGILKQVPEGKSAPGGHEL 210
Query: 144 HPSSYAIVWLG------DLKQGGYPPEVSLAN---------------------------- 169
H + ++ L + P+V L N
Sbjct: 211 HVDYWELIGLAPAGGAESILNEEAHPDVQLDNRHIMIRGENTSKVLKMRSVVMQAFRGHY 270
Query: 170 ---GIAKVTPPTLVQTQVEGGSTLFSLNFFGEPAYLTQSSQLYLETCLPALGDVYCIAQS 226
G +VTPPTLVQTQVEGGSTLF L +F E AYLTQSSQLYLETCLPALGDV+CIAQS
Sbjct: 271 FDRGYCEVTPPTLVQTQVEGGSTLFKLQYFSEEAYLTQSSQLYLETCLPALGDVFCIAQS 330
Query: 227 YRAENSRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVM-ATHGDLVRQMNPN 285
YRAE SRTRRHLAEYTH+EAEC F+TFD+LLD+LEDL+CD VDRV+ +T GD+V ++NP+
Sbjct: 331 YRAEQSRTRRHLAEYTHIEAECPFITFDELLDRLEDLVCDVVDRVLKSTWGDVVYELNPD 390
Query: 286 FEPPARPFLRMNYADAIEYLRKHEIRKPDNTEYEFGEDIPEMPERKMTDQINRPIMLCRF 345
F+PP +PF RMNYADAI++L+ + + K D T YEFGEDIPE PERKMTD IN PIMLCRF
Sbjct: 391 FKPPKKPFKRMNYADAIKWLKDNNVTKDDGTFYEFGEDIPEAPERKMTDTINEPIMLCRF 450
Query: 346 PADIKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGIDPAPYY 405
P DIKSFYMS C E+ LTESVDVL PNVGE++GGSMRI+D E+LL GYKREGIDP PYY
Sbjct: 451 PKDIKSFYMSLCAEDSQLTESVDVLLPNVGEIVGGSMRIYDNEDLLRGYKREGIDPKPYY 510
Query: 406 WYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRD 440
WYTDQR YG+ PHGGYGLGLER+LCWLLN+YH+R+
Sbjct: 511 WYTDQRAYGTQPHGGYGLGLERLLCWLLNRYHIRE 545
|
Source: Glossina morsitans morsitans Species: Glossina morsitans Genus: Glossina Family: Glossinidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|383855496|ref|XP_003703246.1| PREDICTED: asparagine--tRNA ligase, cytoplasmic-like [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 501 bits (1290), Expect = e-139, Method: Compositional matrix adjust.
Identities = 250/400 (62%), Positives = 292/400 (73%), Gaps = 50/400 (12%)
Query: 86 GKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEENMKVQLIHP 145
GK LMFVTLRDG+GF+QCVL DILCQT AL LSTE+S++ G ++ VPE P
Sbjct: 149 GKALMFVTLRDGTGFLQCVLNDILCQTYEALTLSTEASIEVFGTLKIVPEGKNA-----P 203
Query: 146 SSYAIV---W--LGDLKQGGYP--------PEVSLAN----------------------- 169
+ + ++ W +G GG P+V L N
Sbjct: 204 NGHELLVDYWKLIGSSPSGGADSILNEEALPDVQLDNRHIMIRGENTSRILIMRSILTQA 263
Query: 170 --------GIAKVTPPTLVQTQVEGGSTLFSLNFFGEPAYLTQSSQLYLETCLPALGDVY 221
G +VTPPTLVQTQVEGGSTLF L++FGE A+LTQSSQLYLETC+PA+GDVY
Sbjct: 264 FRDHYKDRGYCEVTPPTLVQTQVEGGSTLFKLDYFGEEAFLTQSSQLYLETCIPAMGDVY 323
Query: 222 CIAQSYRAENSRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMAT-HGDLVR 280
CIAQSYRAE SRTRRHLAEY HVEAEC F+TF++LLD+LEDLICD V+RV+ + +G LV+
Sbjct: 324 CIAQSYRAEQSRTRRHLAEYAHVEAECPFITFEELLDRLEDLICDVVERVLNSPYGHLVK 383
Query: 281 QMNPNFEPPARPFLRMNYADAIEYLRKHEIRKPDNTEYEFGEDIPEMPERKMTDQINRPI 340
++NPNF+ P +PF RMNY DAIEYLR + I K D T YEFGEDIPEMPERKMTD IN PI
Sbjct: 384 ELNPNFQVPKKPFKRMNYTDAIEYLRANNITKEDGTFYEFGEDIPEMPERKMTDAINEPI 443
Query: 341 MLCRFPADIKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGID 400
MLCRFPA+IKSFYMS+C E+ LTESVDVL PNVGE++GGSMRIW +ELL GYK ID
Sbjct: 444 MLCRFPAEIKSFYMSRCAEDRRLTESVDVLLPNVGEIVGGSMRIWKYDELLEGYKNANID 503
Query: 401 PAPYYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRD 440
P PYYWYTDQRKYGS PHGGYGLGLER LCWLLN+YH+R+
Sbjct: 504 PKPYYWYTDQRKYGSCPHGGYGLGLERFLCWLLNRYHIRE 543
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|225581052|gb|ACN94629.1| GA10495 [Drosophila miranda] | Back alignment and taxonomy information |
|---|
Score = 496 bits (1278), Expect = e-137, Method: Compositional matrix adjust.
Identities = 240/396 (60%), Positives = 292/396 (73%), Gaps = 42/396 (10%)
Query: 86 GKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPE---------- 135
GK L+F+TLRDG+GF+QCVL D LCQT AL LSTES+V G ++ +PE
Sbjct: 150 GKALIFITLRDGTGFLQCVLNDQLCQTYDALTLSTESTVVLFGTLKLIPEGKTAPGGHEL 209
Query: 136 ------------------------------ENMKVQLIHPSSYAIVWLGDLKQGGYPPEV 165
+N + + ++ ++ + + +
Sbjct: 210 NVDYWELIGLAPPGGADAILNEEAQPDVQLDNRHIMIRGENTSKVLKMRSVVMQAFRAHY 269
Query: 166 SLANGIAKVTPPTLVQTQVEGGSTLFSLNFFGEPAYLTQSSQLYLETCLPALGDVYCIAQ 225
LA G +VTPPTLVQTQVEGGSTLF L +F E AYLTQSSQLYLETCLPALGDV+ IAQ
Sbjct: 270 -LARGYNEVTPPTLVQTQVEGGSTLFKLQYFSEEAYLTQSSQLYLETCLPALGDVFTIAQ 328
Query: 226 SYRAENSRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMAT-HGDLVRQMNP 284
SYRAE SRTRRHLAEYTH+EAEC FLTF+DLLD+LEDL+CD VDRV+ + G+LV+++NP
Sbjct: 329 SYRAEQSRTRRHLAEYTHIEAECPFLTFEDLLDRLEDLVCDVVDRVLKSPWGNLVKELNP 388
Query: 285 NFEPPARPFLRMNYADAIEYLRKHEIRKPDNTEYEFGEDIPEMPERKMTDQINRPIMLCR 344
+F+PP +PF RMNY+DAI++L+++ + K D T YEFGEDIPE PERKMTD IN PIMLCR
Sbjct: 389 DFKPPTKPFRRMNYSDAIKWLKENNVTKDDGTFYEFGEDIPEAPERKMTDAINEPIMLCR 448
Query: 345 FPADIKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGIDPAPY 404
FPA+IKSFYMS+CPE+ LTESVDVL PNVGE++GGSMRI+D EELL GY+REGIDP PY
Sbjct: 449 FPAEIKSFYMSRCPEDKTLTESVDVLLPNVGEIVGGSMRIFDSEELLKGYQREGIDPKPY 508
Query: 405 YWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRD 440
YWYTDQR YG+ PHGGYGLGLER LCWLLN+YH+R+
Sbjct: 509 YWYTDQRIYGTLPHGGYGLGLERFLCWLLNRYHIRE 544
|
Source: Drosophila miranda Species: Drosophila miranda Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|193666902|ref|XP_001951757.1| PREDICTED: asparaginyl-tRNA synthetase, cytoplasmic-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 496 bits (1278), Expect = e-137, Method: Compositional matrix adjust.
Identities = 241/396 (60%), Positives = 292/396 (73%), Gaps = 42/396 (10%)
Query: 86 GKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPE---------- 135
GK LMF+TLRDG+GFIQ VL + LCQT +AL+LSTESSV G +++VPE
Sbjct: 153 GKSLMFITLRDGTGFIQTVLNEKLCQTYNALMLSTESSVLLFGVLKQVPEGKSAPGGHEL 212
Query: 136 ------------------------------ENMKVQLIHPSSYAIVWLGDLKQGGYPPEV 165
+N + + ++ I+ + + +
Sbjct: 213 QVDYWELITLAPPGGADSILNEDANPEVLLDNRHIAIRGENTSKILLMRSVVTQAFRMH- 271
Query: 166 SLANGIAKVTPPTLVQTQVEGGSTLFSLNFFGEPAYLTQSSQLYLETCLPALGDVYCIAQ 225
+L G +V PPTLVQTQVEGGSTLF L++FG+ AYLTQSSQLYLETCLPALGDV+C+AQ
Sbjct: 272 NLDKGCIEVVPPTLVQTQVEGGSTLFKLDYFGQEAYLTQSSQLYLETCLPALGDVFCMAQ 331
Query: 226 SYRAENSRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMAT-HGDLVRQMNP 284
SYRAE SRTRRHL+EYTHVEAE AF+TFDDLLD++ED+ICD V RV+ + H D+V+Q+NP
Sbjct: 332 SYRAEQSRTRRHLSEYTHVEAEFAFITFDDLLDRIEDMICDVVKRVLESPHADIVKQLNP 391
Query: 285 NFEPPARPFLRMNYADAIEYLRKHEIRKPDNTEYEFGEDIPEMPERKMTDQINRPIMLCR 344
F P RPF RM+Y AI++LR++ I K DN+ YEFGEDIPEM ERKMTD IN+PIMLCR
Sbjct: 392 EFAAPKRPFKRMDYKMAIQFLRENNITKEDNSFYEFGEDIPEMAERKMTDLINQPIMLCR 451
Query: 345 FPADIKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGIDPAPY 404
FPA+IKSFYMS+CPE+ LTESVDVL P VGE++GGSMRIWD EELLAGYK+ GIDP PY
Sbjct: 452 FPAEIKSFYMSRCPEDNTLTESVDVLLPGVGEIVGGSMRIWDEEELLAGYKKVGIDPKPY 511
Query: 405 YWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRD 440
YWYTDQRK+GS PHGGYGLGLER LCWLLN+YH+R+
Sbjct: 512 YWYTDQRKFGSCPHGGYGLGLERFLCWLLNRYHIRE 547
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|440892048|gb|ELR45417.1| Asparaginyl-tRNA synthetase, cytoplasmic [Bos grunniens mutus] | Back alignment and taxonomy information |
|---|
Score = 495 bits (1274), Expect = e-137, Method: Compositional matrix adjust.
Identities = 240/397 (60%), Positives = 292/397 (73%), Gaps = 44/397 (11%)
Query: 86 GKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVP----------- 134
GK LMF+ LRDG+GF+QCVL+D LCQ + ++LSTESSV G + P
Sbjct: 152 GKNLMFLVLRDGTGFLQCVLSDDLCQCYNGVVLSTESSVAVYGMLNLTPKGKQAPGGHEL 211
Query: 135 ----------------------EENMKVQLIHPSSYAIVWLGDLKQGGYPPEV------- 165
E ++ VQL + + ++W ++ + V
Sbjct: 212 SCDFWELIGLAPAGGADNLINEESDVDVQL--NNRHMMIWGENMSKILKARSVITRCFRD 269
Query: 166 -SLANGIAKVTPPTLVQTQVEGGSTLFSLNFFGEPAYLTQSSQLYLETCLPALGDVYCIA 224
G ++TPPTLVQTQVEGG+TLF L++FGE AYLTQSSQLYLETC+PALGDV+CIA
Sbjct: 270 HFFDRGYHEITPPTLVQTQVEGGATLFKLDYFGEEAYLTQSSQLYLETCIPALGDVFCIA 329
Query: 225 QSYRAENSRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMAT-HGDLVRQMN 283
QSYRAE SRTRRHLAEYTHVEAEC FLTF++LL++LEDL+CD VDRV+ + G++VR +N
Sbjct: 330 QSYRAEQSRTRRHLAEYTHVEAECPFLTFEELLNRLEDLVCDVVDRVLKSPAGNIVRDLN 389
Query: 284 PNFEPPARPFLRMNYADAIEYLRKHEIRKPDNTEYEFGEDIPEMPERKMTDQINRPIMLC 343
PNF+PP RPF RMNY+DAI +L++H I+K D T YEFGEDIPE PER MTD IN PI+LC
Sbjct: 390 PNFKPPKRPFKRMNYSDAIVWLKEHNIKKEDGTFYEFGEDIPEAPERLMTDTINEPILLC 449
Query: 344 RFPADIKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGIDPAP 403
RFP +IKSFYM +CPE+P LTESVDVL PNVGE++GGSMRIWD EE+LAGYKREGIDP P
Sbjct: 450 RFPVEIKSFYMQRCPEDPRLTESVDVLMPNVGEIVGGSMRIWDNEEILAGYKREGIDPTP 509
Query: 404 YYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRD 440
YYWYTDQRKYG+ PHGGYGLGLER L W+L++YH+RD
Sbjct: 510 YYWYTDQRKYGTCPHGGYGLGLERFLTWILDRYHIRD 546
|
Source: Bos grunniens mutus Species: Bos grunniens Genus: Bos Family: Bovidae Order: Class: Mammalia Phylum: Chordata Superkingdom: Eukaryota |
| >gi|405953092|gb|EKC20816.1| Asparaginyl-tRNA synthetase, cytoplasmic [Crassostrea gigas] | Back alignment and taxonomy information |
|---|
Score = 495 bits (1274), Expect = e-137, Method: Compositional matrix adjust.
Identities = 236/396 (59%), Positives = 293/396 (73%), Gaps = 42/396 (10%)
Query: 86 GKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPE---------- 135
GK LMFV LRDG+GF+QCV +D LCQT A+LLSTE+S+ G+I K+PE
Sbjct: 151 GKNLMFVVLRDGTGFLQCVFSDALCQTYDAVLLSTEASICVYGKITKLPEGKVAPDGHEL 210
Query: 136 -----------------------ENMKVQLIH-------PSSYAIVWLGDLKQGGYPPEV 165
N+ VQL + ++ ++ + + +
Sbjct: 211 TVDFWELVGHSPPGGADTILNEEANIDVQLDNRHMMIRGENTSKVLKMRSVIMQAFRDHF 270
Query: 166 SLANGIAKVTPPTLVQTQVEGGSTLFSLNFFGEPAYLTQSSQLYLETCLPALGDVYCIAQ 225
+ G +VTPPTLVQTQVEGGSTLF LN+FGE AYLTQSSQLYLETC+P++GDV+ IAQ
Sbjct: 271 -INRGYYEVTPPTLVQTQVEGGSTLFKLNYFGEEAYLTQSSQLYLETCIPSMGDVFSIAQ 329
Query: 226 SYRAENSRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVM-ATHGDLVRQMNP 284
SYRAE+SRTRRHLAEYTH+EAEC F+TFDDLL+KLEDL+CD VDRV+ +G +V+++NP
Sbjct: 330 SYRAEHSRTRRHLAEYTHIEAECPFITFDDLLNKLEDLVCDVVDRVLNGPYGSVVKELNP 389
Query: 285 NFEPPARPFLRMNYADAIEYLRKHEIRKPDNTEYEFGEDIPEMPERKMTDQINRPIMLCR 344
NF+PP RPF R+ Y DAI YL++H+I+K D T YEFGEDIPE PERKMTDQIN PI+LC+
Sbjct: 390 NFQPPKRPFKRLEYKDAITYLKEHDIKKDDGTFYEFGEDIPEAPERKMTDQINEPILLCK 449
Query: 345 FPADIKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGIDPAPY 404
FPA+IKSFYM +C ++ LTESVDVL PNVGE++GGSMRIWD EEL+ G+KREGID Y
Sbjct: 450 FPAEIKSFYMQRCADDRRLTESVDVLMPNVGEIVGGSMRIWDHEELMEGFKREGIDTTNY 509
Query: 405 YWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRD 440
YWYTDQRKYG+ PHGGYGLGLER +CWLL++YH+R+
Sbjct: 510 YWYTDQRKYGTCPHGGYGLGLERFMCWLLDRYHIRE 545
|
Source: Crassostrea gigas Species: Crassostrea gigas Genus: Crassostrea Family: Ostreidae Order: Ostreoida Class: Bivalvia Phylum: Mollusca Superkingdom: Eukaryota |
| >gi|392884348|gb|AFM91006.1| asparaginyl-tRNA synthetase, cytoplasmic-like protein [Callorhinchus milii] | Back alignment and taxonomy information |
|---|
Score = 494 bits (1273), Expect = e-137, Method: Compositional matrix adjust.
Identities = 244/400 (61%), Positives = 292/400 (73%), Gaps = 50/400 (12%)
Query: 86 GKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEENMKVQLIHP 145
GK LMFV LRDG+GF+QCVL+D LCQ +AL+LSTESSV G ++ VPE M P
Sbjct: 153 GKNLMFVILRDGTGFLQCVLSDELCQCYNALVLSTESSVALYGTLKIVPEGKMA-----P 207
Query: 146 SSYAIV---W--LGDLKQGGYPP--------EVSLAN----------------------- 169
+ ++ W +G GG +V L N
Sbjct: 208 GGHELICDYWELIGLAPPGGADNLLNEESDVDVQLNNRHMMLRGENMSKIFKVRSALIQC 267
Query: 170 --------GIAKVTPPTLVQTQVEGGSTLFSLNFFGEPAYLTQSSQLYLETCLPALGDVY 221
G ++TPPTLVQTQVEGGSTLF +N+FGE A+LTQSSQLYLETCLP+LGDV+
Sbjct: 268 FRDHYFDRGYFEITPPTLVQTQVEGGSTLFKMNYFGEEAFLTQSSQLYLETCLPSLGDVF 327
Query: 222 CIAQSYRAENSRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMAT-HGDLVR 280
CIAQSYRAE SRTRRHLAEYTH+E ECAF+T+DDLL++LEDL+CD VDR++ + GDLVR
Sbjct: 328 CIAQSYRAEQSRTRRHLAEYTHIEGECAFITYDDLLNRLEDLVCDVVDRILKSPFGDLVR 387
Query: 281 QMNPNFEPPARPFLRMNYADAIEYLRKHEIRKPDNTEYEFGEDIPEMPERKMTDQINRPI 340
+++P F+PP RPF RMNY DAI +L++H+ +K D T YEFGEDIPE PER MTD IN PI
Sbjct: 388 ELHPEFQPPKRPFRRMNYTDAITWLKEHDYKKEDGTFYEFGEDIPEAPERMMTDAINEPI 447
Query: 341 MLCRFPADIKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGID 400
+LCRFPA+IKSFYM +CPE+ LTESVDVL PNVGE++GGSMRIWD +ELL GYKREGID
Sbjct: 448 LLCRFPAEIKSFYMERCPEDRRLTESVDVLMPNVGEIVGGSMRIWDSDELLEGYKREGID 507
Query: 401 PAPYYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRD 440
PYYWYTDQRKYG+ PHGGYGLGLER L WLLN++H+RD
Sbjct: 508 CTPYYWYTDQRKYGTCPHGGYGLGLERFLTWLLNRHHIRD 547
|
Source: Callorhinchus milii Species: Callorhinchus milii Genus: Callorhinchus Family: Callorhinchidae Order: Chimaeriformes Class: Chondrichthyes Phylum: Chordata Superkingdom: Eukaryota |
| >gi|387914232|gb|AFK10725.1| asparaginyl-tRNA synthetase-like protein [Callorhinchus milii] | Back alignment and taxonomy information |
|---|
Score = 493 bits (1270), Expect = e-136, Method: Compositional matrix adjust.
Identities = 243/400 (60%), Positives = 292/400 (73%), Gaps = 50/400 (12%)
Query: 86 GKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEENMKVQLIHP 145
GK LMFV LRDG+GF+QCVL+D LCQ +AL+LSTESSV G ++ VPE M P
Sbjct: 153 GKNLMFVILRDGTGFLQCVLSDELCQCYNALVLSTESSVALYGTLKIVPEGKMA-----P 207
Query: 146 SSYAIV---W--LGDLKQGGYPP--------EVSLAN----------------------- 169
+ ++ W +G GG +V L N
Sbjct: 208 GGHELICDYWELIGLAPPGGADNLLNEESDVDVQLNNRHMMLRGENMSKIFKVRSALIQC 267
Query: 170 --------GIAKVTPPTLVQTQVEGGSTLFSLNFFGEPAYLTQSSQLYLETCLPALGDVY 221
G ++TPPTLVQTQVEGGSTLF +N+FGE A+LTQSSQLYLETCLP+LGDV+
Sbjct: 268 FRDHYFDRGYFEITPPTLVQTQVEGGSTLFKMNYFGEEAFLTQSSQLYLETCLPSLGDVF 327
Query: 222 CIAQSYRAENSRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMAT-HGDLVR 280
CIAQSYRAE SRTRRHLAEYTH+E ECAF+T+DDLL++LEDL+CD VDR++ + GDLVR
Sbjct: 328 CIAQSYRAEQSRTRRHLAEYTHIEGECAFITYDDLLNRLEDLVCDVVDRILKSPFGDLVR 387
Query: 281 QMNPNFEPPARPFLRMNYADAIEYLRKHEIRKPDNTEYEFGEDIPEMPERKMTDQINRPI 340
+++P F+PP RPF +MNY DAI +L++H+ +K D T YEFGEDIPE PER MTD IN PI
Sbjct: 388 ELHPEFQPPKRPFRKMNYTDAITWLKEHDYKKEDGTFYEFGEDIPEAPERMMTDAINEPI 447
Query: 341 MLCRFPADIKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGID 400
+LCRFPA+IKSFYM +CPE+ LTESVDVL PNVGE++GGSMRIWD +ELL GYKREGID
Sbjct: 448 LLCRFPAEIKSFYMERCPEDRRLTESVDVLMPNVGEIVGGSMRIWDSDELLEGYKREGID 507
Query: 401 PAPYYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRD 440
PYYWYTDQRKYG+ PHGGYGLGLER L WLLN++H+RD
Sbjct: 508 CTPYYWYTDQRKYGTCPHGGYGLGLERFLTWLLNRHHIRD 547
|
Source: Callorhinchus milii Species: Callorhinchus milii Genus: Callorhinchus Family: Callorhinchidae Order: Chimaeriformes Class: Chondrichthyes Phylum: Chordata Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 658 | ||||||
| UNIPROTKB|F1MKH6 | 559 | NARS "Asparagine--tRNA ligase, | 0.411 | 0.484 | 0.757 | 6.1e-131 | |
| UNIPROTKB|Q2KJG3 | 559 | NARS "Asparagine--tRNA ligase, | 0.411 | 0.484 | 0.757 | 9.9e-131 | |
| FB|FBgn0086443 | 558 | Aats-asn "Asparaginyl-tRNA syn | 0.414 | 0.489 | 0.759 | 1.3e-130 | |
| UNIPROTKB|O43776 | 548 | NARS "Asparagine--tRNA ligase, | 0.411 | 0.494 | 0.753 | 2e-130 | |
| UNIPROTKB|E2QV97 | 559 | NARS "Uncharacterized protein" | 0.411 | 0.484 | 0.757 | 8.8e-130 | |
| MGI|MGI:1917473 | 559 | Nars "asparaginyl-tRNA synthet | 0.411 | 0.484 | 0.746 | 4.8e-129 | |
| UNIPROTKB|F1LPV0 | 559 | Nars "Protein Nars" [Rattus no | 0.411 | 0.484 | 0.746 | 3.4e-128 | |
| RGD|1307238 | 496 | Nars "asparaginyl-tRNA synthet | 0.411 | 0.546 | 0.746 | 3.4e-128 | |
| UNIPROTKB|F1LML0 | 507 | Nars "Protein Nars" [Rattus no | 0.411 | 0.534 | 0.746 | 3.4e-128 | |
| UNIPROTKB|F1S1X3 | 560 | NARS "Uncharacterized protein" | 0.411 | 0.483 | 0.750 | 7e-128 |
| UNIPROTKB|F1MKH6 NARS "Asparagine--tRNA ligase, cytoplasmic" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1165 (415.2 bits), Expect = 6.1e-131, Sum P(2) = 6.1e-131
Identities = 206/272 (75%), Positives = 241/272 (88%)
Query: 170 GIAKVTPPTLVQTQVEGGSTLFSLNFFGEPAYLTQSSQLYLETCLPALGDVYCIAQSYRA 229
G ++TPPTLVQTQVEGG+TLF L++FGE AYLTQSSQLYLETC+PALGDV+CIAQSYRA
Sbjct: 275 GYHEITPPTLVQTQVEGGATLFKLDYFGEEAYLTQSSQLYLETCIPALGDVFCIAQSYRA 334
Query: 230 ENSRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATH-GDLVRQMNPNFEP 288
E SRTRRHLAEYTHVEAEC FLTF++LL++LEDL+CD VDRV+ + G++VR +NPNF+P
Sbjct: 335 EQSRTRRHLAEYTHVEAECPFLTFEELLNRLEDLVCDVVDRVLKSPAGNIVRDLNPNFKP 394
Query: 289 PARPFLRMNYADAIEYLRKHEIRKPDNTEYEFGEDIPEMPERKMTDQINRPIMLCRFPAD 348
P RPF RMNY+DAI +L++H I+K D T YEFGEDIPE PER MTD IN PI+LCRFP +
Sbjct: 395 PKRPFKRMNYSDAIVWLKEHNIKKEDGTFYEFGEDIPEAPERLMTDTINEPILLCRFPVE 454
Query: 349 IKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGIDPAPYYWYT 408
IKSFYM +CPE+P LTESVDVL PNVGE++GGSMRIWD EE+LAGYKREGIDP PYYWYT
Sbjct: 455 IKSFYMQRCPEDPRLTESVDVLMPNVGEIVGGSMRIWDNEEILAGYKREGIDPTPYYWYT 514
Query: 409 DQRKYGSTPHGGYGLGLERVLCWLLNQYHVRD 440
DQRKYG+ PHGGYGLGLER L W+L++YH+RD
Sbjct: 515 DQRKYGTCPHGGYGLGLERFLTWILDRYHIRD 546
|
|
| UNIPROTKB|Q2KJG3 NARS "Asparagine--tRNA ligase, cytoplasmic" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1165 (415.2 bits), Expect = 9.9e-131, Sum P(2) = 9.9e-131
Identities = 206/272 (75%), Positives = 241/272 (88%)
Query: 170 GIAKVTPPTLVQTQVEGGSTLFSLNFFGEPAYLTQSSQLYLETCLPALGDVYCIAQSYRA 229
G ++TPPTLVQTQVEGG+TLF L++FGE AYLTQSSQLYLETC+PALGDV+CIAQSYRA
Sbjct: 275 GYHEITPPTLVQTQVEGGATLFKLDYFGEEAYLTQSSQLYLETCIPALGDVFCIAQSYRA 334
Query: 230 ENSRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATH-GDLVRQMNPNFEP 288
E SRTRRHLAEYTHVEAEC FLTF++LL++LEDL+CD VDRV+ + G++VR +NPNF+P
Sbjct: 335 EQSRTRRHLAEYTHVEAECPFLTFEELLNRLEDLVCDVVDRVLKSPAGNIVRDLNPNFKP 394
Query: 289 PARPFLRMNYADAIEYLRKHEIRKPDNTEYEFGEDIPEMPERKMTDQINRPIMLCRFPAD 348
P RPF RMNY+DAI +L++H I+K D T YEFGEDIPE PER MTD IN PI+LCRFP +
Sbjct: 395 PKRPFKRMNYSDAIVWLKEHNIKKEDGTFYEFGEDIPEAPERLMTDTINEPILLCRFPVE 454
Query: 349 IKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGIDPAPYYWYT 408
IKSFYM +CPE+P LTESVDVL PNVGE++GGSMRIWD EE+LAGYKREGIDP PYYWYT
Sbjct: 455 IKSFYMQRCPEDPRLTESVDVLMPNVGEIVGGSMRIWDNEEILAGYKREGIDPTPYYWYT 514
Query: 409 DQRKYGSTPHGGYGLGLERVLCWLLNQYHVRD 440
DQRKYG+ PHGGYGLGLER L W+L++YH+RD
Sbjct: 515 DQRKYGTCPHGGYGLGLERFLTWILDRYHIRD 546
|
|
| FB|FBgn0086443 Aats-asn "Asparaginyl-tRNA synthetase" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 1145 (408.1 bits), Expect = 1.3e-130, Sum P(2) = 1.3e-130
Identities = 208/274 (75%), Positives = 238/274 (86%)
Query: 168 ANGIAKVTPPTLVQTQVEGGSTLFSLNFFGEPAYLTQSSQLYLETCLPALGDVYCIAQSY 227
A G +VTPPTLVQTQVEGGSTLF L +FGE AYLTQSSQLYLETCLPALGDV+ I+QSY
Sbjct: 272 ARGYNEVTPPTLVQTQVEGGSTLFKLKYFGEEAYLTQSSQLYLETCLPALGDVFTISQSY 331
Query: 228 RAENSRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATH-GDLVRQMNPNF 286
RAE SRTRRHLAEYTHVEAEC FLTFDDLLD+LEDL+CD VDRV+ + G LV+++NP+F
Sbjct: 332 RAEQSRTRRHLAEYTHVEAECPFLTFDDLLDRLEDLVCDVVDRVLKSPWGYLVKELNPDF 391
Query: 287 EPPARPFLRMNYADAIEYLRKHEIRKPDNTEYEFGEDIPEMPERKMTDQINRPIMLCRFP 346
+PP +PF RMNY DAI++L+++ + K D T YEFGEDIPE PERKMTD IN PIMLCRFP
Sbjct: 392 KPPQKPFRRMNYEDAIKWLKENNVTKDDGTFYEFGEDIPEAPERKMTDTINEPIMLCRFP 451
Query: 347 ADIKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGIDPAPYYW 406
A+IKSFYM +C E+ LTESVDVL PNVGE++GGSMRI+D EELL GYKREGIDP PYYW
Sbjct: 452 AEIKSFYMQRCKEDQRLTESVDVLLPNVGEIVGGSMRIYDSEELLKGYKREGIDPQPYYW 511
Query: 407 YTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRD 440
YTDQR YG+ PHGGYGLGLER LCWLLN+YH+R+
Sbjct: 512 YTDQRVYGTMPHGGYGLGLERFLCWLLNRYHIRE 545
|
|
| UNIPROTKB|O43776 NARS "Asparagine--tRNA ligase, cytoplasmic" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1157 (412.3 bits), Expect = 2.0e-130, Sum P(2) = 2.0e-130
Identities = 205/272 (75%), Positives = 240/272 (88%)
Query: 170 GIAKVTPPTLVQTQVEGGSTLFSLNFFGEPAYLTQSSQLYLETCLPALGDVYCIAQSYRA 229
G +VTPPTLVQTQVEGG+TLF L++FGE A+LTQSSQLYLETCLPALGDV+CIAQSYRA
Sbjct: 264 GYYEVTPPTLVQTQVEGGATLFKLDYFGEEAFLTQSSQLYLETCLPALGDVFCIAQSYRA 323
Query: 230 ENSRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATH-GDLVRQMNPNFEP 288
E SRTRRHLAEYTHVEAEC FLTFDDLL++LEDL+CD VDR++ + G +V ++NPNF+P
Sbjct: 324 EQSRTRRHLAEYTHVEAECPFLTFDDLLNRLEDLVCDVVDRILKSPAGSIVHELNPNFQP 383
Query: 289 PARPFLRMNYADAIEYLRKHEIRKPDNTEYEFGEDIPEMPERKMTDQINRPIMLCRFPAD 348
P RPF RMNY+DAI +L++H+++K D T YEFGEDIPE PER MTD IN PI+LCRFP +
Sbjct: 384 PKRPFKRMNYSDAIVWLKEHDVKKEDGTFYEFGEDIPEAPERLMTDTINEPILLCRFPVE 443
Query: 349 IKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGIDPAPYYWYT 408
IKSFYM +CPE+ LTESVDVL PNVGE++GGSMRI+D EE+LAGYKREGIDP PYYWYT
Sbjct: 444 IKSFYMQRCPEDSRLTESVDVLMPNVGEIVGGSMRIFDSEEILAGYKREGIDPTPYYWYT 503
Query: 409 DQRKYGSTPHGGYGLGLERVLCWLLNQYHVRD 440
DQRKYG+ PHGGYGLGLER L W+LN+YH+RD
Sbjct: 504 DQRKYGTCPHGGYGLGLERFLTWILNRYHIRD 535
|
|
| UNIPROTKB|E2QV97 NARS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1160 (413.4 bits), Expect = 8.8e-130, Sum P(2) = 8.8e-130
Identities = 206/272 (75%), Positives = 239/272 (87%)
Query: 170 GIAKVTPPTLVQTQVEGGSTLFSLNFFGEPAYLTQSSQLYLETCLPALGDVYCIAQSYRA 229
G +VTPPTLVQTQVEGG+TLF L++FGE A+LTQSSQLYLETC+PALGDV+CIAQSYRA
Sbjct: 275 GYYEVTPPTLVQTQVEGGATLFKLDYFGEEAFLTQSSQLYLETCIPALGDVFCIAQSYRA 334
Query: 230 ENSRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATH-GDLVRQMNPNFEP 288
E SRTRRHLAEYTHVEAEC FLTF++LL++LEDL+CD VDRV+ + G +VR +NPNF+P
Sbjct: 335 EQSRTRRHLAEYTHVEAECPFLTFEELLNRLEDLVCDVVDRVLKSPAGSIVRDLNPNFKP 394
Query: 289 PARPFLRMNYADAIEYLRKHEIRKPDNTEYEFGEDIPEMPERKMTDQINRPIMLCRFPAD 348
P RPF RMNY+DAI +L++H I+K D T YEFGEDIPE PER MTD IN PI+LCRFP +
Sbjct: 395 PKRPFKRMNYSDAIVWLKEHNIKKEDGTFYEFGEDIPEAPERLMTDSINEPILLCRFPVE 454
Query: 349 IKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGIDPAPYYWYT 408
IKSFYM +CPE+ LTESVDVL PNVGE++GGSMRIWD EE+LAGYKREGIDP PYYWYT
Sbjct: 455 IKSFYMQRCPEDSRLTESVDVLMPNVGEIVGGSMRIWDSEEILAGYKREGIDPTPYYWYT 514
Query: 409 DQRKYGSTPHGGYGLGLERVLCWLLNQYHVRD 440
DQRKYG+ PHGGYGLGLER L W+LN+YH+RD
Sbjct: 515 DQRKYGTCPHGGYGLGLERFLTWILNRYHIRD 546
|
|
| MGI|MGI:1917473 Nars "asparaginyl-tRNA synthetase" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 1150 (409.9 bits), Expect = 4.8e-129, Sum P(2) = 4.8e-129
Identities = 203/272 (74%), Positives = 239/272 (87%)
Query: 170 GIAKVTPPTLVQTQVEGGSTLFSLNFFGEPAYLTQSSQLYLETCLPALGDVYCIAQSYRA 229
G +VT PTLVQTQVEGG+TLF L++FGE A+LTQSSQLYLETCLPALGDV+CIAQSYRA
Sbjct: 275 GYCEVTTPTLVQTQVEGGATLFKLDYFGEEAFLTQSSQLYLETCLPALGDVFCIAQSYRA 334
Query: 230 ENSRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATH-GDLVRQMNPNFEP 288
E SRTRRHLAE+THVEAEC FLTF+DLL++LEDL+CD VDRV+ + +V ++NPNF+P
Sbjct: 335 EQSRTRRHLAEFTHVEAECPFLTFEDLLNRLEDLVCDVVDRVLKSPVASIVYELNPNFKP 394
Query: 289 PARPFLRMNYADAIEYLRKHEIRKPDNTEYEFGEDIPEMPERKMTDQINRPIMLCRFPAD 348
P RPF RMNY+DAIE+L++H+++K D T YEFG+DIPE PER MTD IN PI+LCRFP +
Sbjct: 395 PKRPFRRMNYSDAIEWLKEHDVKKEDGTFYEFGDDIPEAPERLMTDTINEPILLCRFPVE 454
Query: 349 IKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGIDPAPYYWYT 408
IKSFYM +CPE+P LTESVDVL PNVGE++GGSMR WD EE+L GYKREGIDPAPYYWYT
Sbjct: 455 IKSFYMQRCPEDPRLTESVDVLMPNVGEIVGGSMRSWDSEEILEGYKREGIDPAPYYWYT 514
Query: 409 DQRKYGSTPHGGYGLGLERVLCWLLNQYHVRD 440
DQRKYG+ PHGGYGLGLER L W+LN+YH+RD
Sbjct: 515 DQRKYGTCPHGGYGLGLERFLSWILNRYHIRD 546
|
|
| UNIPROTKB|F1LPV0 Nars "Protein Nars" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1142 (407.1 bits), Expect = 3.4e-128, Sum P(2) = 3.4e-128
Identities = 203/272 (74%), Positives = 236/272 (86%)
Query: 170 GIAKVTPPTLVQTQVEGGSTLFSLNFFGEPAYLTQSSQLYLETCLPALGDVYCIAQSYRA 229
G +VT PTLVQTQVEGG+TLF L++FGE A+LTQSSQLYLETCLPALGDV+CIAQSYRA
Sbjct: 275 GYCEVTTPTLVQTQVEGGATLFKLDYFGEEAFLTQSSQLYLETCLPALGDVFCIAQSYRA 334
Query: 230 ENSRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATH-GDLVRQMNPNFEP 288
E SRTRRHLAE+THVEAEC FLTF+DLL +LEDL+CD VDRV+ + +V +NPNF+
Sbjct: 335 EQSRTRRHLAEFTHVEAECPFLTFEDLLSRLEDLVCDVVDRVLKSPVASIVYDLNPNFKA 394
Query: 289 PARPFLRMNYADAIEYLRKHEIRKPDNTEYEFGEDIPEMPERKMTDQINRPIMLCRFPAD 348
P RPF RMNY+DAIE+LR+H+++K D T YEFG+DIPE PER MTD IN PI+LCRFP +
Sbjct: 395 PKRPFRRMNYSDAIEWLREHDVKKEDGTFYEFGDDIPEAPERLMTDTINEPILLCRFPVE 454
Query: 349 IKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGIDPAPYYWYT 408
IKSFYM +CPE+P LTESVDVL PNVGE++GGSMR WD EE+L GYKREGIDPAPYYWYT
Sbjct: 455 IKSFYMQRCPEDPRLTESVDVLMPNVGEIVGGSMRSWDSEEILEGYKREGIDPAPYYWYT 514
Query: 409 DQRKYGSTPHGGYGLGLERVLCWLLNQYHVRD 440
DQRKYG+ PHGGYGLGLER L W+LN+YH+RD
Sbjct: 515 DQRKYGTCPHGGYGLGLERFLSWILNRYHIRD 546
|
|
| RGD|1307238 Nars "asparaginyl-tRNA synthetase" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1142 (407.1 bits), Expect = 3.4e-128, Sum P(2) = 3.4e-128
Identities = 203/272 (74%), Positives = 236/272 (86%)
Query: 170 GIAKVTPPTLVQTQVEGGSTLFSLNFFGEPAYLTQSSQLYLETCLPALGDVYCIAQSYRA 229
G +VT PTLVQTQVEGG+TLF L++FGE A+LTQSSQLYLETCLPALGDV+CIAQSYRA
Sbjct: 212 GYCEVTTPTLVQTQVEGGATLFKLDYFGEEAFLTQSSQLYLETCLPALGDVFCIAQSYRA 271
Query: 230 ENSRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATH-GDLVRQMNPNFEP 288
E SRTRRHLAE+THVEAEC FLTF+DLL +LEDL+CD VDRV+ + +V +NPNF+
Sbjct: 272 EQSRTRRHLAEFTHVEAECPFLTFEDLLSRLEDLVCDVVDRVLKSPVASIVYDLNPNFKA 331
Query: 289 PARPFLRMNYADAIEYLRKHEIRKPDNTEYEFGEDIPEMPERKMTDQINRPIMLCRFPAD 348
P RPF RMNY+DAIE+LR+H+++K D T YEFG+DIPE PER MTD IN PI+LCRFP +
Sbjct: 332 PKRPFRRMNYSDAIEWLREHDVKKEDGTFYEFGDDIPEAPERLMTDTINEPILLCRFPVE 391
Query: 349 IKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGIDPAPYYWYT 408
IKSFYM +CPE+P LTESVDVL PNVGE++GGSMR WD EE+L GYKREGIDPAPYYWYT
Sbjct: 392 IKSFYMQRCPEDPRLTESVDVLMPNVGEIVGGSMRSWDSEEILEGYKREGIDPAPYYWYT 451
Query: 409 DQRKYGSTPHGGYGLGLERVLCWLLNQYHVRD 440
DQRKYG+ PHGGYGLGLER L W+LN+YH+RD
Sbjct: 452 DQRKYGTCPHGGYGLGLERFLSWILNRYHIRD 483
|
|
| UNIPROTKB|F1LML0 Nars "Protein Nars" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1142 (407.1 bits), Expect = 3.4e-128, Sum P(2) = 3.4e-128
Identities = 203/272 (74%), Positives = 236/272 (86%)
Query: 170 GIAKVTPPTLVQTQVEGGSTLFSLNFFGEPAYLTQSSQLYLETCLPALGDVYCIAQSYRA 229
G +VT PTLVQTQVEGG+TLF L++FGE A+LTQSSQLYLETCLPALGDV+CIAQSYRA
Sbjct: 223 GYCEVTTPTLVQTQVEGGATLFKLDYFGEEAFLTQSSQLYLETCLPALGDVFCIAQSYRA 282
Query: 230 ENSRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATH-GDLVRQMNPNFEP 288
E SRTRRHLAE+THVEAEC FLTF+DLL +LEDL+CD VDRV+ + +V +NPNF+
Sbjct: 283 EQSRTRRHLAEFTHVEAECPFLTFEDLLSRLEDLVCDVVDRVLKSPVASIVYDLNPNFKA 342
Query: 289 PARPFLRMNYADAIEYLRKHEIRKPDNTEYEFGEDIPEMPERKMTDQINRPIMLCRFPAD 348
P RPF RMNY+DAIE+LR+H+++K D T YEFG+DIPE PER MTD IN PI+LCRFP +
Sbjct: 343 PKRPFRRMNYSDAIEWLREHDVKKEDGTFYEFGDDIPEAPERLMTDTINEPILLCRFPVE 402
Query: 349 IKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGIDPAPYYWYT 408
IKSFYM +CPE+P LTESVDVL PNVGE++GGSMR WD EE+L GYKREGIDPAPYYWYT
Sbjct: 403 IKSFYMQRCPEDPRLTESVDVLMPNVGEIVGGSMRSWDSEEILEGYKREGIDPAPYYWYT 462
Query: 409 DQRKYGSTPHGGYGLGLERVLCWLLNQYHVRD 440
DQRKYG+ PHGGYGLGLER L W+LN+YH+RD
Sbjct: 463 DQRKYGTCPHGGYGLGLERFLSWILNRYHIRD 494
|
|
| UNIPROTKB|F1S1X3 NARS "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 1138 (405.7 bits), Expect = 7.0e-128, Sum P(2) = 7.0e-128
Identities = 205/273 (75%), Positives = 239/273 (87%)
Query: 170 GIAKVTPPTLVQTQVEGGSTLFSLNFFGEPAYLTQSSQLYLETCLPALGDVYCIAQSYRA 229
G +VTPPTLVQTQVEGG+TLF L++FGE AYLTQSSQLYLETC+PALGDV+CIAQSYRA
Sbjct: 275 GYYEVTPPTLVQTQVEGGATLFKLDYFGEEAYLTQSSQLYLETCIPALGDVFCIAQSYRA 334
Query: 230 ENSRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVM-ATHGDLVRQMNPNFEP 288
E SRTRRHLAEYTHVEAEC FLTF++LL++LEDL+CD V+RVM ++ +VR++NPNF+P
Sbjct: 335 EQSRTRRHLAEYTHVEAECPFLTFEELLNRLEDLVCDVVERVMKSSAAGIVRELNPNFKP 394
Query: 289 PARPFLRMNYADAIEYLRKHEIRKPDNTEYEFGEDIPEMPERKMTDQINRPIMLCRFPAD 348
P RPF RMNY+DAI +L++H I+K D T YEFGEDIPE PER MTD IN PI+LCRFP +
Sbjct: 395 PKRPFRRMNYSDAIVWLKEHNIKKEDGTFYEFGEDIPEAPERLMTDTINEPILLCRFPVE 454
Query: 349 IKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGIDPAPYYWYT 408
IKSFYM +CPE+ LTESVDVL PNVGE++GGSMRIWD EELLAGYKRE IDP PYYWYT
Sbjct: 455 IKSFYMQRCPEDSRLTESVDVLMPNVGEIVGGSMRIWDNEELLAGYKREEIDPTPYYWYT 514
Query: 409 DQ-RKYGSTPHGGYGLGLERVLCWLLNQYHVRD 440
DQ RKYG+ PHGGYGLGLER L W+L++YH+RD
Sbjct: 515 DQQRKYGTCPHGGYGLGLERFLTWILDRYHIRD 547
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q6BU46 | SYNC_DEBHA | 6, ., 1, ., 1, ., 2, 2 | 0.5075 | 0.5334 | 0.6358 | yes | N/A |
| Q8BP47 | SYNC_MOUSE | 6, ., 1, ., 1, ., 2, 2 | 0.6 | 0.5395 | 0.6350 | yes | N/A |
| O43776 | SYNC_HUMAN | 6, ., 1, ., 1, ., 2, 2 | 0.6101 | 0.5395 | 0.6478 | yes | N/A |
| P38707 | SYNC_YEAST | 6, ., 1, ., 1, ., 2, 2 | 0.5100 | 0.5364 | 0.6371 | yes | N/A |
| Q2KJG3 | SYNC_BOVIN | 6, ., 1, ., 1, ., 2, 2 | 0.6101 | 0.5395 | 0.6350 | yes | N/A |
| Q19722 | SYNC_CAEEL | 6, ., 1, ., 1, ., 2, 2 | 0.5124 | 0.5303 | 0.6403 | yes | N/A |
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 4th Layer | 6.1.1.22 | 0.824 |
| 3rd Layer | 6.1.1 | 0.766 |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 658 | |||
| cd00776 | 322 | cd00776, AsxRS_core, Asx tRNA synthetase (AspRS/As | 1e-120 | |
| COG0017 | 435 | COG0017, AsnS, Aspartyl/asparaginyl-tRNA synthetas | 1e-113 | |
| TIGR00457 | 453 | TIGR00457, asnS, asparaginyl-tRNA synthetase | 3e-96 | |
| PRK03932 | 450 | PRK03932, asnC, asparaginyl-tRNA synthetase; Valid | 1e-83 | |
| pfam00152 | 345 | pfam00152, tRNA-synt_2, tRNA synthetases class II | 1e-73 | |
| PRK05159 | 437 | PRK05159, aspC, aspartyl-tRNA synthetase; Provisio | 1e-57 | |
| TIGR00458 | 428 | TIGR00458, aspS_nondisc, nondiscriminating asparty | 5e-41 | |
| PLN02603 | 565 | PLN02603, PLN02603, asparaginyl-tRNA synthetase | 1e-39 | |
| PTZ00425 | 586 | PTZ00425, PTZ00425, asparagine-tRNA ligase; Provis | 5e-39 | |
| PRK06462 | 335 | PRK06462, PRK06462, asparagine synthetase A; Revie | 8e-39 | |
| PLN02221 | 572 | PLN02221, PLN02221, asparaginyl-tRNA synthetase | 6e-38 | |
| cd04323 | 84 | cd04323, AsnRS_cyto_like_N, AsnRS_cyto_like_N: N-t | 2e-37 | |
| PLN02850 | 530 | PLN02850, PLN02850, aspartate-tRNA ligase | 2e-35 | |
| cd00669 | 269 | cd00669, Asp_Lys_Asn_RS_core, Asp_Lys_Asn_tRNA syn | 2e-29 | |
| PTZ00401 | 550 | PTZ00401, PTZ00401, aspartyl-tRNA synthetase; Prov | 1e-28 | |
| COG0017 | 435 | COG0017, AsnS, Aspartyl/asparaginyl-tRNA synthetas | 8e-28 | |
| PLN02532 | 633 | PLN02532, PLN02532, asparagine-tRNA synthetase | 9e-25 | |
| cd04100 | 85 | cd04100, Asp_Lys_Asn_RS_N, Asp_Lys_Asn_RS_N: N-ter | 3e-24 | |
| PRK05159 | 437 | PRK05159, aspC, aspartyl-tRNA synthetase; Provisio | 4e-20 | |
| TIGR00457 | 453 | TIGR00457, asnS, asparaginyl-tRNA synthetase | 5e-19 | |
| PRK03932 | 450 | PRK03932, asnC, asparaginyl-tRNA synthetase; Valid | 8e-19 | |
| pfam01336 | 75 | pfam01336, tRNA_anti, OB-fold nucleic acid binding | 5e-15 | |
| cd04323 | 84 | cd04323, AsnRS_cyto_like_N, AsnRS_cyto_like_N: N-t | 1e-14 | |
| TIGR00458 | 428 | TIGR00458, aspS_nondisc, nondiscriminating asparty | 4e-13 | |
| cd04319 | 103 | cd04319, PhAsnRS_like_N, PhAsnRS_like_N: N-termina | 9e-13 | |
| cd04317 | 135 | cd04317, EcAspRS_like_N, EcAspRS_like_N: N-termina | 4e-12 | |
| COG0173 | 585 | COG0173, AspS, Aspartyl-tRNA synthetase [Translati | 2e-11 | |
| cd04100 | 85 | cd04100, Asp_Lys_Asn_RS_N, Asp_Lys_Asn_RS_N: N-ter | 6e-11 | |
| cd00777 | 280 | cd00777, AspRS_core, Asp tRNA synthetase (aspRS) c | 2e-10 | |
| TIGR00499 | 496 | TIGR00499, lysS_bact, lysyl-tRNA synthetase, eukar | 5e-10 | |
| cd00775 | 329 | cd00775, LysRS_core, Lys_tRNA synthetase (LysRS) c | 8e-10 | |
| PRK00476 | 588 | PRK00476, aspS, aspartyl-tRNA synthetase; Validate | 1e-09 | |
| TIGR00459 | 583 | TIGR00459, aspS_bact, aspartyl-tRNA synthetase, ba | 1e-09 | |
| cd04318 | 82 | cd04318, EcAsnRS_like_N, EcAsnRS_like_N: N-termina | 2e-09 | |
| cd04316 | 108 | cd04316, ND_PkAspRS_like_N, ND_PkAspRS_like_N: N-t | 9e-09 | |
| cd04320 | 102 | cd04320, AspRS_cyto_N, AspRS_cyto_N: N-terminal, a | 2e-08 | |
| COG1190 | 502 | COG1190, LysU, Lysyl-tRNA synthetase (class II) [T | 9e-08 | |
| PLN02903 | 652 | PLN02903, PLN02903, aminoacyl-tRNA ligase | 3e-07 | |
| cd04321 | 86 | cd04321, ScAspRS_mt_like_N, ScAspRS_mt_like_N: N-t | 4e-07 | |
| pfam01336 | 75 | pfam01336, tRNA_anti, OB-fold nucleic acid binding | 9e-07 | |
| PTZ00385 | 659 | PTZ00385, PTZ00385, lysyl-tRNA synthetase; Provisi | 2e-06 | |
| PRK12820 | 706 | PRK12820, PRK12820, bifunctional aspartyl-tRNA syn | 3e-06 | |
| TIGR00459 | 583 | TIGR00459, aspS_bact, aspartyl-tRNA synthetase, ba | 1e-05 | |
| PLN02903 | 652 | PLN02903, PLN02903, aminoacyl-tRNA ligase | 1e-05 | |
| PTZ00417 | 585 | PTZ00417, PTZ00417, lysine-tRNA ligase; Provisiona | 1e-05 | |
| TIGR00459 | 583 | TIGR00459, aspS_bact, aspartyl-tRNA synthetase, ba | 2e-05 | |
| PRK12445 | 505 | PRK12445, PRK12445, lysyl-tRNA synthetase; Reviewe | 2e-05 | |
| cd00776 | 322 | cd00776, AsxRS_core, Asx tRNA synthetase (AspRS/As | 9e-05 | |
| pfam00152 | 345 | pfam00152, tRNA-synt_2, tRNA synthetases class II | 1e-04 | |
| PRK02983 | 1094 | PRK02983, lysS, lysyl-tRNA synthetase; Provisional | 2e-04 | |
| COG0173 | 585 | COG0173, AspS, Aspartyl-tRNA synthetase [Translati | 4e-04 | |
| PLN02850 | 530 | PLN02850, PLN02850, aspartate-tRNA ligase | 0.001 | |
| cd04317 | 135 | cd04317, EcAspRS_like_N, EcAspRS_like_N: N-termina | 0.003 |
| >gnl|CDD|238399 cd00776, AsxRS_core, Asx tRNA synthetase (AspRS/AsnRS) class II core domain | Back alignment and domain information |
|---|
Score = 361 bits (928), Expect = e-120
Identities = 118/277 (42%), Positives = 166/277 (59%), Gaps = 9/277 (3%)
Query: 169 NGIAKVTPPTLVQTQVEGGSTLFSLNFFGEPAYLTQSSQLYLETCLPALGDVYCIAQSYR 228
NG +V P + T EGG+ LF +++FG+PAYL QS QLY E + AL VY I +R
Sbjct: 41 NGFTEVHTPKITSTDTEGGAELFKVSYFGKPAYLAQSPQLYKEMLIAALERVYEIGPVFR 100
Query: 229 AENSRTRRHLAEYTHVEAECAFL-TFDDLLDKLEDLICDTVDRVMATHGD---LVRQMNP 284
AE S TRRHL+E+ +EAE AF+ +++++D +E+LI RV+ LV Q+N
Sbjct: 101 AEKSNTRRHLSEFWMLEAEMAFIEDYNEVMDLIEELIKYIFKRVLERCAKELELVNQLNR 160
Query: 285 NFEPPARPFLRMNYADAIEYLRKHEIRKPDNTEYEFGEDIPEMPERKMTDQI-NRPIMLC 343
P PF R+ Y +AIE LR+ E ++GED+ ER + + + P+ +
Sbjct: 161 ELLKPLEPFPRITYDEAIELLREKG----VEEEVKWGEDLSTEHERLLGEIVKGDPVFVT 216
Query: 344 RFPADIKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGIDPAP 403
+P +IK FYM +NP ES D+L P VGE++GGS RI D +EL K G+DP
Sbjct: 217 DYPKEIKPFYMKPDDDNPETVESFDLLMPGVGEIVGGSQRIHDYDELEERIKEHGLDPES 276
Query: 404 YYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRD 440
+ WY D RKYG PHGG+GLGLER++ WLL ++R+
Sbjct: 277 FEWYLDLRKYGMPPHGGFGLGLERLVMWLLGLDNIRE 313
|
Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Length = 322 |
| >gnl|CDD|223096 COG0017, AsnS, Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 346 bits (891), Expect = e-113
Identities = 129/400 (32%), Positives = 198/400 (49%), Gaps = 55/400 (13%)
Query: 87 KGLMFVTLRDGSGFIQCVL--ADILCQTEHALLLSTESSVQFRGRIEKVPEENMKVQLIH 144
++F+ LRDGSGFIQ V+ + + A L+ ESSV G ++ P+ + +
Sbjct: 32 GKIIFLVLRDGSGFIQAVVPKNKVYEELFKAKKLTLESSVVVTGIVKASPKAPQGFE-LQ 90
Query: 145 PSSYAIVWLGDLKQGGYP----------------------PEVSLA-------------- 168
++ D YP P++
Sbjct: 91 VEKIEVLGEADPP---YPIDKKEHSELETLLDNRHLDLRTPKIQAVFKIRSSILRAIREF 147
Query: 169 ---NGIAKVTPPTLVQTQVEGGSTLFSLNFFGEPAYLTQSSQLYLETCLPALGDVYCIAQ 225
NG +V P + + EGG LF +++F + AYLTQS QLY E AL V+ I
Sbjct: 148 FYENGFTEVHTPIITASATEGGGELFKVDYFDKEAYLTQSPQLYKEALAAALERVFTIGP 207
Query: 226 SYRAENSRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGD---LVRQM 282
++RAE S TRRHL+E+ ++ E AF +D++D E+LI +V+ D + +
Sbjct: 208 TFRAEKSNTRRHLSEFWMLDPEMAFADLNDVMDLAEELIKYLFKKVLEECADELEFLGRD 267
Query: 283 NPNFE-PPARPFLRMNYADAIEYLRKHEIRKPDNTEYEFGEDIPEMPERKMTDQINRP-I 340
N + P + PF R+ Y +AIE L + K E+G+D+ ER + ++ +P +
Sbjct: 268 NSELKRPESAPFPRITYKEAIEILEEKGFEKV-----EWGDDLGTEHERYLGEEYFKPPV 322
Query: 341 MLCRFPADIKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGID 400
+ +P +IK FYM P+NP S D+L P GE+IGGS R D + L+ K +G+D
Sbjct: 323 FVTNYPKEIKPFYMRPDPDNPGTVASFDLLAPGGGEIIGGSQREHDYDLLVERIKEKGLD 382
Query: 401 PAPYYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRD 440
P Y WY D RKYG PH G+GLGLER++ ++L ++R+
Sbjct: 383 PESYEWYLDLRKYGMPPHAGFGLGLERLVMYILGLDNIRE 422
|
Length = 435 |
| >gnl|CDD|232982 TIGR00457, asnS, asparaginyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 303 bits (777), Expect = 3e-96
Identities = 135/417 (32%), Positives = 195/417 (46%), Gaps = 71/417 (17%)
Query: 87 KGLMFVTLRDGS--GFIQCVLADILCQTEHALL--LSTESSVQFRGRIEKVPEENMKVQL 142
K ++F+ L DGS G IQ V+ LL L+T SSV G++ + P + V+L
Sbjct: 32 KKIIFLELNDGSSLGPIQAVINGEDNPYLFQLLKSLTTGSSVSVTGKVVESPGKGQPVEL 91
Query: 143 IHPSSYAIVWLGDLKQGGYP-------------------------------PEVSLA--- 168
+V G+ + YP +S A
Sbjct: 92 -QVKKIEVV--GEAEPDDYPLQKKEHSLEFLRDIAHLRLRTNTLGAVMRVRNALSQAIHR 148
Query: 169 ----NGIAKVTPPTLVQTQVEGGSTLFSLN---------FFGEPAYLTQSSQLYLETCLP 215
NG V+PP L EG LF ++ FFG+ AYLT S QLYLET
Sbjct: 149 YFQENGFTWVSPPILTSNDCEGAGELFRVSTGNIDFSQDFFGKEAYLTVSGQLYLETYAL 208
Query: 216 ALGDVYCIAQSYRAENSRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATH 275
AL VY ++RAE S T RHL+E+ +E E AF +DLL E LI + V+
Sbjct: 209 ALSKVYTFGPTFRAEKSNTSRHLSEFWMIEPEMAFANLNDLLQLAETLIKYIIKAVLENC 268
Query: 276 GDLVRQMNPNFEPPARP---------FLRMNYADAIEYLRKHEIRKPDNTEYE--FGEDI 324
++ + NF+ F R+ Y DAIE L++ + N EYE +G+D+
Sbjct: 269 SQELKFLEKNFDKDLIKRLENIINNKFARITYTDAIEILKESD----KNFEYEDFWGDDL 324
Query: 325 PEMPERKMTDQI-NRPIMLCRFPADIKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMR 383
ER + ++ P+ + +P DIK+FYM ++ ++D+L P +GE+IGGS R
Sbjct: 325 QTEHERFLAEEYFKPPVFVTNYPKDIKAFYMKLN-DDGKTVAAMDLLAPGIGEIIGGSER 383
Query: 384 IWDPEELLAGYKREGIDPAPYYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRD 440
D ++L K G+D WY D RKYGS PH G+GLG ER+L ++ ++RD
Sbjct: 384 EDDLDKLENRMKEMGLDTDALNWYLDLRKYGSVPHSGFGLGFERLLAYITGLENIRD 440
|
In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn [Protein synthesis, tRNA aminoacylation]. Length = 453 |
| >gnl|CDD|235176 PRK03932, asnC, asparaginyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Score = 270 bits (692), Expect = 1e-83
Identities = 134/420 (31%), Positives = 198/420 (47%), Gaps = 80/420 (19%)
Query: 87 KGLMFVTLRDGSGF--IQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEENM------ 138
+ F+ LRDGS F +Q V + E L+T SSV G + + P
Sbjct: 32 GKIAFLQLRDGSCFKQLQVVKDNGEEYFEEIKKLTTGSSVIVTGTVVESPRAGQGYELQA 91
Query: 139 -KVQLIH--PSSYAI---------------VWLGDLKQG-------GYPPEVSLA----- 168
K+++I P Y I + K G ++ A
Sbjct: 92 TKIEVIGEDPEDYPIQKKRHSIEFLREIAHLRPRTNKFGAVMRIRN----TLAQAIHEFF 147
Query: 169 --NGIAKVTPPTLVQTQVEGGSTLF---------SLNFFGEPAYLTQSSQLYLETCLPAL 217
NG V P + + EG LF S +FFG+ AYLT S QLY E AL
Sbjct: 148 NENGFVWVDTPIITASDCEGAGELFRVTTLDLDFSKDFFGKEAYLTVSGQLYAEAYAMAL 207
Query: 218 GDVYCIAQSYRAENSRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGD 277
G VY ++RAENS TRRHLAE+ +E E AF +D +D E+++ V V+ D
Sbjct: 208 GKVYTFGPTFRAENSNTRRHLAEFWMIEPEMAFADLEDNMDLAEEMLKYVVKYVLENCPD 267
Query: 278 ----LVRQMNP-------NFEPPARPFLRMNYADAIEYLRKHEIRKPDNTEYEFGEDI-- 324
L R+++ NF PF R+ Y +AIE L+K +K + E+G+D+
Sbjct: 268 DLEFLNRRVDKGDIERLENFIES--PFPRITYTEAIEILQKSG-KKFEFPV-EWGDDLGS 323
Query: 325 PEMPERKMTDQI-NRPIMLCRFPADIKSFYMSKCPENPALTESV---DVLFPNVGEVIGG 380
ER + ++ +P+ + +P DIK+FYM P+ ++V D+L P +GE+IGG
Sbjct: 324 EH--ERYLAEEHFKKPVFVTNYPKDIKAFYMRLNPDG----KTVAAMDLLAPGIGEIIGG 377
Query: 381 SMRIWDPEELLAGYKREGIDPAPYYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRD 440
S R + L A K G++ Y+WY D R+YGS PH G+GLG ER++ ++ ++RD
Sbjct: 378 SQREERLDVLEARIKELGLNKEDYWWYLDLRRYGSVPHSGFGLGFERLVAYITGLDNIRD 437
|
Length = 450 |
| >gnl|CDD|215753 pfam00152, tRNA-synt_2, tRNA synthetases class II (D, K and N) | Back alignment and domain information |
|---|
Score = 240 bits (614), Expect = 1e-73
Identities = 94/304 (30%), Positives = 142/304 (46%), Gaps = 38/304 (12%)
Query: 169 NGIAKVTPPTLVQTQVEGGSTLFS--LNFFGEPAYLTQSSQLYLETCLPA-LGDVYCIAQ 225
G +V P L ++ EGG+ F F+ + AYL QS QLY + + A V+ IA
Sbjct: 39 RGFLEVETPILTKSTPEGGARDFLVPSKFYAKEAYLPQSPQLYKQLLMVAGFDRVFQIAP 98
Query: 226 SYRAENSRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGDLVRQMNPN 285
+R E+ RT RH E+T ++ E +F+ ++D++D EDLI +V+ +L
Sbjct: 99 CFRDEDLRTDRHPPEFTQLDLEMSFVDYEDVMDLTEDLIKYVFKKVLGKREELE---LLG 155
Query: 286 FEPPARPFLRMNYADAIE--------------------YLRKHEIRKPDNTEY----EFG 321
E P F R+ YA+AIE + E + G
Sbjct: 156 IELP--EFPRITYAEAIERYGSDKPDLRFGLELKDVTEIFKGSEFKVFAEAGDVVDKALG 213
Query: 322 EDIPEMPERKMTDQ-INRPIMLCRFPADIKSFYMSKCPENPALTESVDVLFPNVGEVIGG 380
E+ E + D+ + P+ + FP FYM K + P L E D++ GE+ GG
Sbjct: 214 ALRSELGEENLGDKDKDNPVFVTDFPLFEHPFYMPKDEDPPGLAERFDLVLNG-GEIGGG 272
Query: 381 SMRIWDPEELLAGYKREGIDP----APYYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQY 436
S+RI DPEE ++ G+DP + +Y D KYG PHGG GLGL+R++ L
Sbjct: 273 SIRIHDPEEQRKRFEELGLDPEEAEEKFGFYLDALKYGMPPHGGIGLGLDRLVMLLTGLE 332
Query: 437 HVRD 440
+R+
Sbjct: 333 SIRE 336
|
Length = 345 |
| >gnl|CDD|235354 PRK05159, aspC, aspartyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 200 bits (512), Expect = 1e-57
Identities = 108/406 (26%), Positives = 186/406 (45%), Gaps = 65/406 (16%)
Query: 87 KGLMFVTLRDGSGFIQCVL-ADILCQT-EHALLLSTESSVQFRGRIEKVPEENMKVQLIH 144
G+ F+ LRD SG IQ V+ + + E L ES V G ++ P+ V++I
Sbjct: 32 GGIAFLILRDRSGIIQVVVKKKVDEELFETIKKLKRESVVSVTGTVKANPKAPGGVEVI- 90
Query: 145 PSSYAIV--------------------------WLGDLKQGGYPPEVS----LANGIAK- 173
P ++ +L DL++ P V + + + +
Sbjct: 91 PEEIEVLNKAEEPLPLDISGKVLAELDTRLDNRFL-DLRR----PRVRAIFKIRSEVLRA 145
Query: 174 ------------VTPPTLVQTQVEGGSTLFSLNFFGEPAYLTQSSQLYLETCLPALGD-V 220
+ P +V + EGG+ LF +++F + AYL QS QLY + + A + V
Sbjct: 146 FREFLYENGFTEIFTPKIVASGTEGGAELFPIDYFEKEAYLAQSPQLYKQMMVGAGFERV 205
Query: 221 YCIAQSYRAENSRTRRHLAEYTHVEAECAFLT-FDDLLDKLEDLICDTVDRVMATHGDLV 279
+ I +RAE T RHL EYT ++ E F+ +D++D LE+L+ + V +
Sbjct: 206 FEIGPVFRAEEHNTSRHLNEYTSIDVEMGFIDDHEDVMDLLENLLRYMYEDVAENCEKEL 265
Query: 280 RQMNPNFEPPARPFLRMNYADAIEYLRKHEIRKPDNTEYEFGEDIPEMPERKMTDQINR- 338
+ P P R+ Y +AIE L+ E +G+D+ ER + + +
Sbjct: 266 ELLGIELPVPETPIPRITYDEAIEILKSKGN------EISWGDDLDTEGERLLGEYVKEE 319
Query: 339 ----PIMLCRFPADIKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGY 394
+ +P++ + FY ++P +++S D+LF + E+ G RI + L+
Sbjct: 320 YGSDFYFITDYPSEKRPFYTMPDEDDPEISKSFDLLFRGL-EITSGGQRIHRYDMLVESI 378
Query: 395 KREGIDPAPYYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRD 440
K +G++P + +Y + KYG PHGG+GLGLER+ LL ++R+
Sbjct: 379 KEKGLNPESFEFYLEAFKYGMPPHGGFGLGLERLTMKLLGLENIRE 424
|
Length = 437 |
| >gnl|CDD|129550 TIGR00458, aspS_nondisc, nondiscriminating aspartyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 154 bits (391), Expect = 5e-41
Identities = 82/272 (30%), Positives = 139/272 (51%), Gaps = 8/272 (2%)
Query: 170 GIAKVTPPTLVQTQVEGGSTLFSLNFFGEPAYLTQSSQLYLETCLPA-LGDVYCIAQSYR 228
G +V P LV + EGG+ LF + +F A+L QS QLY + + A VY I +R
Sbjct: 151 GFIEVHTPKLVASATEGGTELFPITYFEREAFLGQSPQLYKQQLMAAGFERVYEIGPIFR 210
Query: 229 AENSRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGDLVRQMNPNFEP 288
AE T RHL E T ++ E AF D++D LE+L+ + V + + E
Sbjct: 211 AEEHNTHRHLNEATSIDIEMAFEDHHDVMDILEELVVRVFEDVPERCAHQLETLEFKLEK 270
Query: 289 PARPFLRMNYADAIEYLRKHEIRKPDNTEYEFGEDIPEMPERKMTDQINRPIMLCRFPAD 348
P F+R+ Y +AIE + GED+ E+ + ++++ + +P +
Sbjct: 271 PEGKFVRLTYDEAIEMANAKGVEIGW------GEDLSTEAEKALGEEMDGLYFITDWPTE 324
Query: 349 IKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGIDPAPYYWYT 408
I+ FY +NP +++S D+++ ++ E+ G+ RI + L+ K +G++P + Y
Sbjct: 325 IRPFYTMPDEDNPEISKSFDLMYRDL-EISSGAQRIHLHDLLVERIKAKGLNPEGFKDYL 383
Query: 409 DQRKYGSTPHGGYGLGLERVLCWLLNQYHVRD 440
+ YG PH G+GLG ER + +LL ++R+
Sbjct: 384 EAFSYGMPPHAGWGLGAERFVMFLLGLKNIRE 415
|
In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_arch, represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the Archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn) [Protein synthesis, tRNA aminoacylation]. Length = 428 |
| >gnl|CDD|178213 PLN02603, PLN02603, asparaginyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 153 bits (387), Expect = 1e-39
Identities = 95/297 (31%), Positives = 149/297 (50%), Gaps = 34/297 (11%)
Query: 162 PPEVSLANGIAKVTPPTLVQTQVEGGSTLFSLNFFGEPAYLTQSSQLYLETCLPALGDVY 221
P + P T + G +S +FFG+PA+LT S QL ET AL DVY
Sbjct: 272 PNSAENGGSLVDDIPKT------KDGLIDWSQDFFGKPAFLTVSGQLNGETYATALSDVY 325
Query: 222 CIAQSYRAENSRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMAT------- 274
++RAENS T RHLAE+ +E E AF +D + + V ++
Sbjct: 326 TFGPTFRAENSNTSRHLAEFWMIEPELAFADLNDDMACATAYLQYVVKYILENCKEDMEF 385
Query: 275 -----HGDLVRQMNPNFEPPARPFLRMNYADAIEYLRKHEIRKPDNTEYEF----GEDIP 325
++ +++ E + F++++Y DAIE L K ++EF G D+
Sbjct: 386 FNTWIEKGIIDRLSDVVE---KNFVQLSYTDAIELLLK------AKKKFEFPVKWGLDLQ 436
Query: 326 EMPERKMTDQI--NRPIMLCRFPADIKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMR 383
ER +T++ RP+++ +P +IK+FYM + + + ++D+L P VGE+IGGS R
Sbjct: 437 SEHERYITEEAFGGRPVIIRDYPKEIKAFYMRENDDGKTVA-AMDMLVPRVGELIGGSQR 495
Query: 384 IWDPEELLAGYKREGIDPAPYYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRD 440
E L A ++ Y+WY D R+YGS PH G+GLG ER++ + ++RD
Sbjct: 496 EERLEYLEARLDELKLNKESYWWYLDLRRYGSVPHAGFGLGFERLVQFATGIDNIRD 552
|
Length = 565 |
| >gnl|CDD|240414 PTZ00425, PTZ00425, asparagine-tRNA ligase; Provisional | Back alignment and domain information |
|---|
Score = 152 bits (384), Expect = 5e-39
Identities = 88/256 (34%), Positives = 139/256 (54%), Gaps = 11/256 (4%)
Query: 194 NFFGEPAYLTQSSQLYLETCLPALGDVYCIAQSYRAENSRTRRHLAEYTHVEAECAFLTF 253
+FF + A+LT S QL LE ++GDVY ++RAENS T RHLAE+ +E E AF
Sbjct: 320 DFFSKQAFLTVSGQLSLENLCSSMGDVYTFGPTFRAENSHTSRHLAEFWMIEPEIAFADL 379
Query: 254 DDLLDKLEDLICDTVDRVMATHGDLVRQMNPNFE----PPARPFLRMNYADAIEYLRKHE 309
D ++ E I + V+ + D + N E + L ++A I Y +
Sbjct: 380 YDNMELAESYIKYCIGYVLNNNFDDIYYFEENVETGLISRLKNILDEDFAK-ITYTNVID 438
Query: 310 IRKPDNTEYE----FGEDIPEMPERKMTDQI-NRPIMLCRFPADIKSFYMSKCPENPALT 364
+ +P + +E +G D+ ER + +QI +P+++ +P D+K+FYM K E+
Sbjct: 439 LLQPYSDSFEVPVKWGMDLQSEHERFVAEQIFKKPVIVYNYPKDLKAFYM-KLNEDQKTV 497
Query: 365 ESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGIDPAPYYWYTDQRKYGSTPHGGYGLG 424
++DVL P +GEVIGGS R + E L K + ++ Y+WY RK+GS PH G+GLG
Sbjct: 498 AAMDVLVPKIGEVIGGSQREDNLERLDKMIKEKKLNMESYWWYRQLRKFGSHPHAGFGLG 557
Query: 425 LERVLCWLLNQYHVRD 440
ER++ + +++D
Sbjct: 558 FERLIMLVTGVDNIKD 573
|
Length = 586 |
| >gnl|CDD|235808 PRK06462, PRK06462, asparagine synthetase A; Reviewed | Back alignment and domain information |
|---|
Score = 145 bits (369), Expect = 8e-39
Identities = 73/260 (28%), Positives = 128/260 (49%), Gaps = 10/260 (3%)
Query: 191 FSLNFFGEPAYLTQSSQLYLETCLPALGDVYCIAQSYRAEN--SRTRRHLAEYTHVEAEC 248
S++F+G YL S L+ + L LG ++ ++ ++R E T RHL E+T ++ E
Sbjct: 76 ISIDFYGVEYYLADSMILHKQLALRMLGKIFYLSPNFRLEPVDKDTGRHLYEFTQLDIEI 135
Query: 249 AFLTFDDLLDKLEDLICDTVDRVMATHGDLVRQMNPNFEPPARPFLRMNYADAIEYLRKH 308
D+++D +EDLI V ++ H D + + RPF R+ + +A+E L +
Sbjct: 136 EGADLDEVMDLIEDLIKYLVKELLEEHEDELEFFGRDLPHLKRPFKRITHKEAVEILNEE 195
Query: 309 EIRKPDNTEYEFGEDIPEMPERKMTDQINRPIMLCRFPADIKSFYMSKCPENPALTESVD 368
R D E G + E+ +++ P + P + FY + PE P + + D
Sbjct: 196 GCRGID--LEELGSEG----EKSLSEHFEEPFWIIDIPKGSREFYDREDPERPGVLRNYD 249
Query: 369 VLFPN-VGEVIGGSMRIWDPEELLAGYKREGIDPAPYYWYTDQRKYGSTPHGGYGLGLER 427
+L P GE + G R ++ EE++ + G+DP Y WY + K G P G+G+G+ER
Sbjct: 250 LLLPEGYGEAVSGGEREYEYEEIVERIREHGVDPEKYKWYLEMAKEGPLPSAGFGIGVER 309
Query: 428 VLCWLLNQYHVRDKYQLIAK 447
+ ++ H+R+ Q +
Sbjct: 310 LTRYICGLRHIRE-VQPFPR 328
|
Length = 335 |
| >gnl|CDD|177867 PLN02221, PLN02221, asparaginyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 148 bits (375), Expect = 6e-38
Identities = 91/265 (34%), Positives = 141/265 (53%), Gaps = 12/265 (4%)
Query: 187 GSTLFSLNFFGEPAYLTQSSQLYLETCLPALGDVYCIAQSYRAENSRTRRHLAEYTHVEA 246
G +S +FFG A+LT S QL +ET AL VY ++RAENS T RHLAE+ VE
Sbjct: 296 GKIDYSKDFFGRQAFLTVSGQLQVETYACALSSVYTFGPTFRAENSHTSRHLAEFWMVEP 355
Query: 247 ECAFLTFDDLLDKLEDLICDTVDRVMATHGDLVRQMNPNFEP---------PARPFLRMN 297
E AF +D ++ E + ++ D + M NF+ + PF R+
Sbjct: 356 EIAFADLEDDMNCAEAYVKYMCKWLLDKCFDDMELMAKNFDSGCIDRLRMVASTPFGRIT 415
Query: 298 YADAIEYLRKHEIR-KPDNTEYEFGEDIPEMPERKMTDQI-NRPIMLCRFPADIKSFYMS 355
Y +AIE L + + K + E+G D+ ER +T+ + +P+++ +P IK+FYM
Sbjct: 416 YTEAIELLEEAVAKGKEFDNNVEWGIDLASEHERYLTEVLFQKPLIVYNYPKGIKAFYM- 474
Query: 356 KCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGIDPAPYYWYTDQRKYGS 415
+ ++ ++DVL P VGE+IGGS R + + + G+ PY WY D R+YG+
Sbjct: 475 RLNDDEKTVAAMDVLVPKVGELIGGSQREERYDVIKQRIEEMGLPIEPYEWYLDLRRYGT 534
Query: 416 TPHGGYGLGLERVLCWLLNQYHVRD 440
H G+GLG ER++ + ++RD
Sbjct: 535 VKHCGFGLGFERMILFATGIDNIRD 559
|
Length = 572 |
| >gnl|CDD|239818 cd04323, AsnRS_cyto_like_N, AsnRS_cyto_like_N: N-terminal, anticodon recognition domain of the type found in human and Saccharomyces cerevisiae cytoplasmic asparaginyl-tRNA synthetase (AsnRS), in Brugia malayai AsnRs and, in various putative bacterial AsnRSs | Back alignment and domain information |
|---|
Score = 133 bits (337), Expect = 2e-37
Identities = 46/84 (54%), Positives = 60/84 (71%), Gaps = 2/84 (2%)
Query: 514 RVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILCQ-TEHALLLSTESSVQFRGRI 572
RV +FGWVHRLR Q K LMF+ LRDG+GF+QCVL+ L A L+ ESSV+ G +
Sbjct: 1 RVKVFGWVHRLRSQKK-LMFLVLRDGTGFLQCVLSKKLVTEFYDAKSLTQESSVEVTGEV 59
Query: 573 EKVPEGKSAPGGHELKVDYWEVVG 596
++ P K APGG+EL+VDY E++G
Sbjct: 60 KEDPRAKQAPGGYELQVDYLEIIG 83
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic synthesis, whereas the other exclusively with mitochondrial protein synthesis. AsnRS is immunodominant antigen of the filarial nematode B. malayai and of interest as a target for anti-parasitic drug design. Human AsnRS has been shown to be a pro-inflammatory chemokine which interacts with CCR3 chemokine receptors on T cells, immature dendritic cells and macrophages. Length = 84 |
| >gnl|CDD|215456 PLN02850, PLN02850, aspartate-tRNA ligase | Back alignment and domain information |
|---|
Score = 140 bits (355), Expect = 2e-35
Identities = 92/286 (32%), Positives = 146/286 (51%), Gaps = 22/286 (7%)
Query: 167 LANGIAKVTPPTLVQTQVEGGSTLFSLNFFGEPAYLTQSSQLYLETCLPA-LGDVYCIAQ 225
L+ G ++ P L+ EGGS +F L++ G+PA L QS QL+ + + V+ I
Sbjct: 240 LSKGFVEIHTPKLIAGASEGGSAVFRLDYKGQPACLAQSPQLHKQMAICGDFRRVFEIGP 299
Query: 226 SYRAENSRTRRHLAEYTHVEAECA----FLTFDDLLDKLEDLICDTVDRVMATHGDLVRQ 281
+RAE+S T RHL E+T ++ E + D++D+L I D ++ + +R+
Sbjct: 300 VFRAEDSFTHRHLCEFTGLDLEMEIKEHYSEVLDVVDELFVAIFDGLNERCKKELEAIRE 359
Query: 282 MNPNFEPPA--RPFLRMNYADAIEYLRKHEIRKPD----NTEYE--FGEDIPEMPERKMT 333
P FEP LR+ +A+ I+ L++ + NTE E G+ + E + T
Sbjct: 360 QYP-FEPLKYLPKTLRLTFAEGIQMLKEAGVEVDPLGDLNTESERKLGQLVKE---KYGT 415
Query: 334 DQINRPIMLCRFPADIKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAG 393
D +L R+P ++ FY CP++P + S DV F E+I G+ R+ DPE L
Sbjct: 416 DFY----ILHRYPLAVRPFYTMPCPDDPKYSNSFDV-FIRGEEIISGAQRVHDPELLEKR 470
Query: 394 YKREGIDPAPYYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVR 439
+ GID Y D +YG+ PHGG+G+GLERV+ ++R
Sbjct: 471 AEECGIDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIR 516
|
Length = 530 |
| >gnl|CDD|238358 cd00669, Asp_Lys_Asn_RS_core, Asp_Lys_Asn_tRNA synthetase class II core domain | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 2e-29
Identities = 69/280 (24%), Positives = 120/280 (42%), Gaps = 43/280 (15%)
Query: 168 ANGIAKVTPPTLVQTQVEGGSTLFSLNFF--GEPAYLTQSSQLYLETCLPA-LGDVYCIA 224
G +V P L + G+ F + + G YL S QL+ + + L V+ I
Sbjct: 17 DRGFLEVETPMLQKITGGAGARPFLVKYNALGLDYYLRISPQLFKKRLMVGGLDRVFEIN 76
Query: 225 QSYRAENSRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGDLVRQMNP 284
+++R E+ R R H E+T ++ E AF ++D+++ E L+ V+
Sbjct: 77 RNFRNEDLRAR-HQPEFTMMDLEMAFADYEDVIELTERLVRHLAREVLGVTA---VTYGF 132
Query: 285 NFEPPARPFLRMNYADAIEYLRKHEIRKPDNTEYEFGEDIPEMPERKMTDQINRPIMLCR 344
E PF R+ Y +A+E +P+ L
Sbjct: 133 ELEDFGLPFPRLTYREALERYG-------------------------------QPLFLTD 161
Query: 345 FPADIKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGIDPAP- 403
+PA++ S S NP + ++ D LF N EV GS R+ DP+ ++ +GI+
Sbjct: 162 YPAEMHSPLASPHDVNPEIADAFD-LFINGVEVGNGSSRLHDPDIQAEVFQEQGINKEAG 220
Query: 404 ---YYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRD 440
+ +Y +YG PHGG G+G++R++ + N +R+
Sbjct: 221 MEYFEFYLKALEYGLPPHGGLGIGIDRLIMLMTNSPTIRE 260
|
This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. Length = 269 |
| >gnl|CDD|173592 PTZ00401, PTZ00401, aspartyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 120 bits (302), Expect = 1e-28
Identities = 98/338 (28%), Positives = 148/338 (43%), Gaps = 51/338 (15%)
Query: 145 PSSYAIVWLGDLKQGGYPPEVSLANGIAKVTPPTLVQTQVEGGSTLFSLNFFGEPAYLTQ 204
P+S AI L + Y + + + ++ P ++ EGG+ +F L +F AYL Q
Sbjct: 207 PASGAIFRLQS-RVCQYFRQFLIDSDFCEIHSPKIINAPSEGGANVFKLEYFNRFAYLAQ 265
Query: 205 SSQLYLETCLPA-LGDVYCIAQSYRAENSRTRRHLAEYTHVEAECAFLT-FDDLLDKLED 262
S QLY + L + V+ + +R+ENS T RHL E+ ++ E + ++LD E
Sbjct: 266 SPQLYKQMVLQGDVPRVFEVGPVFRSENSNTHRHLTEFVGLDVEMRINEHYYEVLDLAES 325
Query: 263 LICDTVDRVMATHGD-------------LVRQMNP-------------NFEPP----AR- 291
L +R +ATH LV ++ P EP AR
Sbjct: 326 LFNYIFER-LATHTKELKAVCQQYPFEPLVWKLTPERMKELGVGVISEGVEPTDKYQARV 384
Query: 292 -----PFLRMNYADAIEYLRKHEIRKPDNTEYEFGEDIPEMPERKMTDQINRP-----IM 341
LR+NY IE L K T+ DI E+ + + +
Sbjct: 385 HNMDSRMLRINYMHCIELLNTVLEEKMAPTD-----DINTTNEKLLGKLVKERYGTDFFI 439
Query: 342 LCRFPADIKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGIDP 401
RFP+ + FY +C ++ T S D +F E+ G+ RI DP+ LLA K +D
Sbjct: 440 SDRFPSSARPFYTMECKDDERFTNSYD-MFIRGEEISSGAQRIHDPDLLLARAKMLNVDL 498
Query: 402 APYYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVR 439
P Y D + G+ PHGG+G+GLERV+ L +VR
Sbjct: 499 TPIKEYVDSFRLGAWPHGGFGVGLERVVMLYLGLSNVR 536
|
Length = 550 |
| >gnl|CDD|223096 COG0017, AsnS, Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 8e-28
Identities = 60/163 (36%), Positives = 88/163 (53%), Gaps = 16/163 (9%)
Query: 501 RIKIKDGEKYRD-KRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVL--ADILCQTEHA 557
R IKD + + + VT+ GWVH R GK ++F+ LRDGSGFIQ V+ + + A
Sbjct: 4 RTYIKDIKPHVGGQEVTVRGWVHNKRDLGK-IIFLVLRDGSGFIQAVVPKNKVYEELFKA 62
Query: 558 LLLSTESSVQFRGRIEKVPEGKSAPGGHELKVDYWEVVGLAPAGGADAIL----NEEALP 613
L+ ESSV G ++ P+ AP G EL+V+ EV+G AD E +
Sbjct: 63 KKLTLESSVVVTGIVKASPK---APQGFELQVEKIEVLG-----EADPPYPIDKKEHSEL 114
Query: 614 DVQLDNRHIMIRGENTSRVLLMRSVLLQALRAHFADRNYTEVN 656
+ LDNRH+ +R V +RS +L+A+R F + +TEV+
Sbjct: 115 ETLLDNRHLDLRTPKIQAVFKIRSSILRAIREFFYENGFTEVH 157
|
Length = 435 |
| >gnl|CDD|215291 PLN02532, PLN02532, asparagine-tRNA synthetase | Back alignment and domain information |
|---|
Score = 109 bits (273), Expect = 9e-25
Identities = 76/266 (28%), Positives = 130/266 (48%), Gaps = 24/266 (9%)
Query: 191 FSLNFFGEPAYLTQSSQLYLETCLPALGDVYCIAQSYRAENSRTRRHLAEYTHVEAECAF 250
FS +FF P YLT S +L+LE+ ALG+VY +RA+ + RHLAE VE E AF
Sbjct: 363 FSKDFFSRPTYLTVSGRLHLESYACALGNVYTFGPRFRADRIDSARHLAEMWMVEVEMAF 422
Query: 251 LTFDDLLDKLED---LICDTV------------DRVMATHGDLVRQMNPNFEPPARPFLR 295
+D ++ ED +C V R+ T + + + R
Sbjct: 423 SELEDAMNCAEDYFKFLCKWVLENCSEDMKFVSKRIDKTISTRLEAI------ISSSLQR 476
Query: 296 MNYADAIEYLRKHEIRKPDNTEYEFGEDIPEMPERKMTDQI-NRPIMLCRFPADIKSFYM 354
++Y +A++ L++ +K + T+ E+G + + D+I +P+++ +P ++K FY+
Sbjct: 477 ISYTEAVDLLKQATDKKFE-TKPEWGIALTTEHLSYLADEIYKKPVIIYNYPKELKPFYV 535
Query: 355 SKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGIDPAPYYWYTDQRKYG 414
+ ++ + D++ P VG VI GS + L A + G+ Y WY D R++G
Sbjct: 536 -RLNDDGKTVAAFDLVVPKVGTVITGSQNEERMDILNARIEELGLPREQYEWYLDLRRHG 594
Query: 415 STPHGGYGLGLERVLCWLLNQYHVRD 440
+ H G+ LG E ++ + VRD
Sbjct: 595 TVKHSGFSLGFELMVLFATGLPDVRD 620
|
Length = 633 |
| >gnl|CDD|239766 cd04100, Asp_Lys_Asn_RS_N, Asp_Lys_Asn_RS_N: N-terminal, anticodon recognition domain of class 2b aminoacyl-tRNA synthetases (aaRSs) | Back alignment and domain information |
|---|
Score = 96.5 bits (241), Expect = 3e-24
Identities = 34/85 (40%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
Query: 514 RVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILCQTEHALL--LSTESSVQFRGR 571
VT+ GWVH R G L+F+ LRDGSG +Q V+ L TES V G
Sbjct: 1 EVTLAGWVHSRRDHGG-LIFIDLRDGSGIVQVVVNKEELGEFFEEAEKLRTESVVGVTGT 59
Query: 572 IEKVPEGKSAPGGHELKVDYWEVVG 596
+ K PEG A G EL+ + EV+
Sbjct: 60 VVKRPEGNLATGEIELQAEELEVLS 84
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. Class 2b aaRSs include the homodimeric aspartyl-, asparaginyl-, and lysyl-tRNA synthetases (AspRS, AsnRS, and LysRS). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. Included in this group are archeal and archeal-like AspRSs which are non-discriminating and can charge both tRNAAsp and tRNAAsn. E. coli cells have two isoforms of LysRSs (LysS and LysU) encoded by two distinct genes, which are differentially regulated. The cytoplasmic and the mitochondrial isoforms of human LysRS are encoded by a single gene. Yeast cytoplasmic and mitochondrial LysRSs participate in mitochondrial import of cytoplasmic tRNAlysCUU. In addition to their housekeeping role, human LysRS may function as a signaling molecule that activates immune cells. Tomato LysRS may participate in a process possibly connected to conditions of oxidative-stress conditions or heavy metal uptake. It is known that human tRNAlys and LysRS are specifically packaged into HIV-1 suggesting a role for LysRS in tRNA packaging. AsnRS is immunodominant antigen of the filarial nematode Brugia malayai and is of interest as a target for anti-parasitic drug design. Human AsnRS has been shown to be a pro-inflammatory chemokine which interacts with CCR3 chemokine receptors on T cells, immature dendritic cells and macrophages. Length = 85 |
| >gnl|CDD|235354 PRK05159, aspC, aspartyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 92.9 bits (232), Expect = 4e-20
Identities = 49/153 (32%), Positives = 71/153 (46%), Gaps = 19/153 (12%)
Query: 513 KRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVL-ADILCQT-EHALLLSTESSVQFRG 570
+ VT+ GWVH +R G G+ F+ LRD SG IQ V+ + + E L ES V G
Sbjct: 17 EEVTLAGWVHEIRDLG-GIAFLILRDRSGIIQVVVKKKVDEELFETIKKLKRESVVSVTG 75
Query: 571 RIEKVPEGKSAPGGHELKVDYWEVVGLA-------PAGGADAILNEEALPDVQLDNRHIM 623
V APGG E+ + EV+ A +G A L D +LDNR +
Sbjct: 76 ---TVKANPKAPGGVEVIPEEIEVLNKAEEPLPLDISGKVLAEL------DTRLDNRFLD 126
Query: 624 IRGENTSRVLLMRSVLLQALRAHFADRNYTEVN 656
+R + +RS +L+A R + +TE+
Sbjct: 127 LRRPRVRAIFKIRSEVLRAFREFLYENGFTEIF 159
|
Length = 437 |
| >gnl|CDD|232982 TIGR00457, asnS, asparaginyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 89.7 bits (223), Expect = 5e-19
Identities = 48/164 (29%), Positives = 76/164 (46%), Gaps = 11/164 (6%)
Query: 499 AVRIK--IKDGEKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGS--GFIQCVLADILCQT 554
+ IK ++ K+ VT+ GWV +R K ++F+ L DGS G IQ V+
Sbjct: 1 SAAIKDLLQQVYKFVGDEVTVSGWVRT-KRSSKKIIFLELNDGSSLGPIQAVINGEDNPY 59
Query: 555 EHALL--LSTESSVQFRGRIEKVPEGKSAPGGHELKVDYWEVVGLAPAGGADAILNEEAL 612
LL L+T SSV G++ + P EL+V EVVG A + +E
Sbjct: 60 LFQLLKSLTTGSSVSVTGKVVESP---GKGQPVELQVKKIEVVGEAE-PDDYPLQKKEHS 115
Query: 613 PDVQLDNRHIMIRGENTSRVLLMRSVLLQALRAHFADRNYTEVN 656
+ D H+ +R V+ +R+ L QA+ +F + +T V+
Sbjct: 116 LEFLRDIAHLRLRTNTLGAVMRVRNALSQAIHRYFQENGFTWVS 159
|
In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn [Protein synthesis, tRNA aminoacylation]. Length = 453 |
| >gnl|CDD|235176 PRK03932, asnC, asparaginyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Score = 89.4 bits (223), Expect = 8e-19
Identities = 49/164 (29%), Positives = 76/164 (46%), Gaps = 18/164 (10%)
Query: 501 RIKIKD--GEKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGF--IQCVLADILCQTEH 556
R+ IKD KY + VT+ GWV +R + F+ LRDGS F +Q V + E
Sbjct: 3 RVSIKDILKGKYVGQEVTVRGWVRT-KRDSGKIAFLQLRDGSCFKQLQVVKDNGEEYFEE 61
Query: 557 ALLLSTESSVQFRGRIEKVPEGKSAPGGHELKVDYWEVVGLAPAGGAD-AILNEEALPDV 615
L+T SSV G + + P A G+EL+ EV+G P D I + +
Sbjct: 62 IKKLTTGSSVIVTGTVVESPR---AGQGYELQATKIEVIGEDP---EDYPIQKKRHSIEF 115
Query: 616 QLDNRHIMIRGENTSR---VLLMRSVLLQALRAHFADRNYTEVN 656
+ H+ R T++ V+ +R+ L QA+ F + + V+
Sbjct: 116 LREIAHLRPR---TNKFGAVMRIRNTLAQAIHEFFNENGFVWVD 156
|
Length = 450 |
| >gnl|CDD|216440 pfam01336, tRNA_anti, OB-fold nucleic acid binding domain | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 5e-15
Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 8/82 (9%)
Query: 515 VTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVL-ADILCQTEHALLLSTESSVQFRGRIE 573
VT+ G V +RR G + F+TLRDG+G IQ VL + + A L V G+++
Sbjct: 1 VTVAGRVTSVRRSGGKVAFLTLRDGTGSIQVVLFKEEA--EKLAKKLKEGDVVLVTGKVK 58
Query: 574 KVPEGKSAPGGHELKVDYWEVV 595
K P G+ EL V+ EV+
Sbjct: 59 KRPGGE-----LELVVEEIEVL 75
|
This family contains OB-fold domains that bind to nucleic acids. The family includes the anti-codon binding domain of lysyl, aspartyl, and asparaginyl -tRNA synthetases (See pfam00152). Aminoacyl-tRNA synthetases catalyze the addition of an amino acid to the appropriate tRNA molecule EC:6.1.1.-. This family also includes part of RecG helicase involved in DNA repair. Replication factor A is a heterotrimeric complex, that contains a subunit in this family. This domain is also found at the C-terminus of bacterial DNA polymerase III alpha chain. Length = 75 |
| >gnl|CDD|239818 cd04323, AsnRS_cyto_like_N, AsnRS_cyto_like_N: N-terminal, anticodon recognition domain of the type found in human and Saccharomyces cerevisiae cytoplasmic asparaginyl-tRNA synthetase (AsnRS), in Brugia malayai AsnRs and, in various putative bacterial AsnRSs | Back alignment and domain information |
|---|
Score = 69.2 bits (170), Expect = 1e-14
Identities = 23/50 (46%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 87 KGLMFVTLRDGSGFIQCVLADILCQ-TEHALLLSTESSVQFRGRIEKVPE 135
K LMF+ LRDG+GF+QCVL+ L A L+ ESSV+ G +++ P
Sbjct: 15 KKLMFLVLRDGTGFLQCVLSKKLVTEFYDAKSLTQESSVEVTGEVKEDPR 64
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic synthesis, whereas the other exclusively with mitochondrial protein synthesis. AsnRS is immunodominant antigen of the filarial nematode B. malayai and of interest as a target for anti-parasitic drug design. Human AsnRS has been shown to be a pro-inflammatory chemokine which interacts with CCR3 chemokine receptors on T cells, immature dendritic cells and macrophages. Length = 84 |
| >gnl|CDD|129550 TIGR00458, aspS_nondisc, nondiscriminating aspartyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 71.4 bits (175), Expect = 4e-13
Identities = 48/150 (32%), Positives = 69/150 (46%), Gaps = 12/150 (8%)
Query: 513 KRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILCQTE---HALLLSTESSVQFR 569
+ VT GWVH +R G GL+FV LRD G IQ A L+ ES V R
Sbjct: 13 QEVTFMGWVHEIRDLG-GLIFVLLRDREGLIQITAPAKKVSKNLFKWAKKLNLESVVAVR 71
Query: 570 GRIEKVPEGKSAPGGHELKVDYWEVVGLAPAGGADAILNEEALP---DVQLDNRHIMIRG 626
G V + APGG E+ EV+ A + E +P D +LD R + +R
Sbjct: 72 G---IVKIKEKAPGGFEIIPTKIEVINEAKE--PLPLDPTEKVPAELDTRLDYRFLDLRR 126
Query: 627 ENTSRVLLMRSVLLQALRAHFADRNYTEVN 656
+ +RS +L+++R A+ + EV+
Sbjct: 127 PTVQAIFRIRSGVLESVREFLAEEGFIEVH 156
|
In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_arch, represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the Archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn) [Protein synthesis, tRNA aminoacylation]. Length = 428 |
| >gnl|CDD|239814 cd04319, PhAsnRS_like_N, PhAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Pyrococcus horikoshii AsnRS asparaginyl-tRNA synthetase (AsnRS) | Back alignment and domain information |
|---|
Score = 64.5 bits (157), Expect = 9e-13
Identities = 36/111 (32%), Positives = 55/111 (49%), Gaps = 10/111 (9%)
Query: 514 RVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILCQT--EHALLLSTESSVQFRGR 571
+VT+ GWV+R R GK F+ LRD +G +Q V + L + A + ESSV G
Sbjct: 1 KVTLAGWVYRKREVGKKA-FIVLRDSTGIVQAVFSKDLNEEAYREAKKVGIESSVIVEGA 59
Query: 572 IEKVPEGKSAPGGHELKVDYWEVVGLAPAGGADAILNEEALPDVQLDNRHI 622
++ P APGG E+ + E++ + E+A + LD RH+
Sbjct: 60 VKADPR---APGGAEVHGEKLEIIQN----VEFFPITEDASDEFLLDVRHL 103
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The archeal enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Length = 103 |
| >gnl|CDD|239812 cd04317, EcAspRS_like_N, EcAspRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli aspartyl-tRNA synthetase (AspRS), the human mitochondrial (mt) AspRS-2, the discriminating (D) Thermus thermophilus AspRS-1, and the nondiscriminating (ND) Helicobacter pylori AspRS | Back alignment and domain information |
|---|
Score = 63.7 bits (156), Expect = 4e-12
Identities = 33/93 (35%), Positives = 45/93 (48%), Gaps = 6/93 (6%)
Query: 507 GEKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLA-DILCQTEHALLLSTESS 565
E + + VT+ GWV R R G GL+F+ LRD G +Q V + + E A L ES
Sbjct: 9 RESHVGQEVTLCGWVQRRRDHG-GLIFIDLRDRYGIVQVVFDPEEAPEFELAEKLRNESV 67
Query: 566 VQFRGRIEKVPEG----KSAPGGHELKVDYWEV 594
+Q G++ PEG K G E+ EV
Sbjct: 68 IQVTGKVRARPEGTVNPKLPTGEIEVVASELEV 100
|
These homodimeric enzymes are class2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic synthesis, whereas the other exclusively with mitochondrial protein synthesis. Human mtAspRS participates in mitochondrial biosynthesis; this enzyme been shown to charge E.coli native tRNAsp in addition to in vitro transcribed human mitochondrial tRNAsp. T. thermophilus is rare among bacteria in having both a D_AspRS and a ND_AspRS. H.pylori ND-AspRS can charge both tRNAASp and tRNAAsn, it is fractionally more efficient at aminoacylating tRNAAsp over tRNAAsn. The H.pylori genome does not contain AsnRS. Length = 135 |
| >gnl|CDD|223251 COG0173, AspS, Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 66.4 bits (163), Expect = 2e-11
Identities = 44/158 (27%), Positives = 71/158 (44%), Gaps = 13/158 (8%)
Query: 507 GEKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILCQTEHALL--LSTES 564
E + + VT+ GWVHR R G GL+F+ LRD G +Q V + L E
Sbjct: 10 RESHVGQTVTLSGWVHRRRDHG-GLIFIDLRDREGIVQVVFDPEDSPEAFEVASRLRNEF 68
Query: 565 SVQFRGRIEKVPEGKSAP----GGHELKVDYWEVVGLA---PAGGADAILNEEALPDVQL 617
+Q G + PEG P G E+ + EV+ + P D A +++L
Sbjct: 69 VIQVTGTVRARPEGTINPNLPTGEIEVLAEEIEVLNASKTLPFQIED---ETNASEEIRL 125
Query: 618 DNRHIMIRGENTSRVLLMRSVLLQALRAHFADRNYTEV 655
R++ +R + L +RS + +A+R D+ + E+
Sbjct: 126 KYRYLDLRRPEMQKNLKLRSKVTKAIRNFLDDQGFLEI 163
|
Length = 585 |
| >gnl|CDD|239766 cd04100, Asp_Lys_Asn_RS_N, Asp_Lys_Asn_RS_N: N-terminal, anticodon recognition domain of class 2b aminoacyl-tRNA synthetases (aaRSs) | Back alignment and domain information |
|---|
Score = 58.7 bits (143), Expect = 6e-11
Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 87 KGLMFVTLRDGSGFIQCVLADILCQTEHALL--LSTESSVQFRGRIEKVPEENMKVQ 141
GL+F+ LRDGSG +Q V+ L TES V G + K PE N+
Sbjct: 15 GGLIFIDLRDGSGIVQVVVNKEELGEFFEEAEKLRTESVVGVTGTVVKRPEGNLATG 71
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. Class 2b aaRSs include the homodimeric aspartyl-, asparaginyl-, and lysyl-tRNA synthetases (AspRS, AsnRS, and LysRS). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. Included in this group are archeal and archeal-like AspRSs which are non-discriminating and can charge both tRNAAsp and tRNAAsn. E. coli cells have two isoforms of LysRSs (LysS and LysU) encoded by two distinct genes, which are differentially regulated. The cytoplasmic and the mitochondrial isoforms of human LysRS are encoded by a single gene. Yeast cytoplasmic and mitochondrial LysRSs participate in mitochondrial import of cytoplasmic tRNAlysCUU. In addition to their housekeeping role, human LysRS may function as a signaling molecule that activates immune cells. Tomato LysRS may participate in a process possibly connected to conditions of oxidative-stress conditions or heavy metal uptake. It is known that human tRNAlys and LysRS are specifically packaged into HIV-1 suggesting a role for LysRS in tRNA packaging. AsnRS is immunodominant antigen of the filarial nematode Brugia malayai and is of interest as a target for anti-parasitic drug design. Human AsnRS has been shown to be a pro-inflammatory chemokine which interacts with CCR3 chemokine receptors on T cells, immature dendritic cells and macrophages. Length = 85 |
| >gnl|CDD|238400 cd00777, AspRS_core, Asp tRNA synthetase (aspRS) class II core domain | Back alignment and domain information |
|---|
Score = 61.8 bits (151), Expect = 2e-10
Identities = 61/254 (24%), Positives = 104/254 (40%), Gaps = 50/254 (19%)
Query: 202 LTQSSQLYLETCLPALGDVYC-IAQSYRAENSRTRRHLAEYTHVEAECAFLTFDDLLDKL 260
L QS QL+ + + + D Y IA+ +R E+ R R E+T ++ E +F+ +D++ +
Sbjct: 53 LPQSPQLFKQLLMVSGFDRYFQIARCFRDEDLRADRQ-PEFTQIDIEMSFVDQEDIMSLI 111
Query: 261 EDLICDTVDRVMATHGDLVRQMNPNFEPPARPFLRMNYADAIEY--LRKHEI-------R 311
E L+ V+ PF RM YA+A+E + I
Sbjct: 112 EGLLKYVFKEVLG-------------VELTTPFPRMTYAEAMERYGFKFLWIVDFPLFEW 158
Query: 312 KPDNTEYEFGEDIPEMPERKMTDQINRPIMLCRFPADIKSFYMSKCPENPALTESVD-VL 370
+ P+ + D + + P D ++ ++ D VL
Sbjct: 159 DEEEGRLVSAHHPFTAPKEEDLDLLEK------DPEDARA-------------QAYDLVL 199
Query: 371 FPNVGEVIGGSMRIWDPEELLAGYKREGIDPAPYY----WYTDQRKYGSTPHGGYGLGLE 426
N E+ GGS+RI DP+ ++ G+ + + KYG+ PHGG LGL+
Sbjct: 200 --NGVELGGGSIRIHDPDIQEKVFEILGLSEEEAEEKFGFLLEAFKYGAPPHGGIALGLD 257
Query: 427 RVLCWLLNQYHVRD 440
R++ L +RD
Sbjct: 258 RLVMLLTGSESIRD 271
|
Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain. Length = 280 |
| >gnl|CDD|232998 TIGR00499, lysS_bact, lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 5e-10
Identities = 57/250 (22%), Positives = 106/250 (42%), Gaps = 36/250 (14%)
Query: 220 VYCIAQSYRAENSRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGDLV 279
VY I +++R E T H E+T +E A+ ++DL+D E+L ++ T
Sbjct: 243 VYEIGRNFRNEGVDTT-HNPEFTMIEFYQAYADYEDLMDLTENLFKFLAQELLGTTKITY 301
Query: 280 RQMNPNFEPPARPFLRMNYADAIE---------------------YLRKHEIRKPDNTEY 318
++ +F +PF R+ +AI+ +K I + +
Sbjct: 302 GELEIDF---KKPFKRITMVEAIKKYDMETGIDFDDLKDFETAKALAKKIGIEVAEKS-L 357
Query: 319 EFGEDIPEMPERKMTDQINRPIMLCRFPADIKSFYMSKCPENPALTESVDVLFPNVGEVI 378
G + E+ E+ + + +P + +PA+I S + P NP T+ + LF E+
Sbjct: 358 TLGHILNELFEQFLEHTLIQPTFITHYPAEI-SPLAKRNPSNPEFTDRFE-LFIAGKEIA 415
Query: 379 GGSMRIWDPEELLAGY------KREGIDPAPY--YWYTDQRKYGSTPHGGYGLGLERVLC 430
+ DP + + K G D A + + + +YG P GG G+G++R++
Sbjct: 416 NAFSELNDPLDQRERFEQQVAEKEAGDDEAQFVDEDFVEALEYGMPPTGGLGIGIDRLVM 475
Query: 431 WLLNQYHVRD 440
L + +RD
Sbjct: 476 LLTDSKSIRD 485
|
This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms [Protein synthesis, tRNA aminoacylation]. Length = 496 |
| >gnl|CDD|238398 cd00775, LysRS_core, Lys_tRNA synthetase (LysRS) class II core domain | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 8e-10
Identities = 57/248 (22%), Positives = 98/248 (39%), Gaps = 33/248 (13%)
Query: 220 VYCIAQSYRAENSRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGDLV 279
VY I +++R E H E+T +E A+ ++D++D EDL V ++
Sbjct: 79 VYEIGRNFRNE-GIDLTHNPEFTMIEFYEAYADYNDMMDLTEDLFSGLVKKINGKTKIEY 137
Query: 280 RQMNPNFEPPARPFLRMNYADAIE-----YLRKHEIRKPDNTEYEFGEDIPEMPERKMT- 333
+F P PF R+ DA++ + ++ +P+ + I E E+ T
Sbjct: 138 GGKELDFTP---PFKRVTMVDALKEKTGIDFPELDLEQPEELAKLLAKLIKEKIEKPRTL 194
Query: 334 -------------DQINRPIMLCRFPADIKSFYMSKCPENPALTESVDVLFPNVGEVIGG 380
+ +P + P +I S + NP LTE + LF E+
Sbjct: 195 GKLLDKLFEEFVEPTLIQPTFIIDHPVEI-SPLAKRHRSNPGLTERFE-LFICGKEIANA 252
Query: 381 SMRIWDPEELLAGY------KREGIDPAPYYWYTDQR--KYGSTPHGGYGLGLERVLCWL 432
+ DP + + K G D A +YG P GG G+G++R++ L
Sbjct: 253 YTELNDPFDQRERFEEQAKQKEAGDDEAMMMDEDFVTALEYGMPPTGGLGIGIDRLVMLL 312
Query: 433 LNQYHVRD 440
+ +RD
Sbjct: 313 TDSNSIRD 320
|
Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Length = 329 |
| >gnl|CDD|234775 PRK00476, aspS, aspartyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Score = 61.2 bits (150), Expect = 1e-09
Identities = 45/167 (26%), Positives = 71/167 (42%), Gaps = 35/167 (20%)
Query: 508 EKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVL---ADILCQTEHALLLSTES 564
E + + VT+ GWVHR R G GL+F+ LRD G +Q V A+ E L +E
Sbjct: 13 ESHVGQTVTLCGWVHRRRDHG-GLIFIDLRDREGIVQVVFDPDAEAFEVAES---LRSEY 68
Query: 565 SVQFRGRIEKVPEG----KSAPGGHELKVDYWEVVGLAPAGGADAILNE-EALP------ 613
+Q G + PEG G E+ E +LN+ + LP
Sbjct: 69 VIQVTGTVRARPEGTVNPNLPTGEIEVLASELE------------VLNKSKTLPFPIDDE 116
Query: 614 -----DVQLDNRHIMIRGENTSRVLLMRSVLLQALRAHFADRNYTEV 655
+++L R++ +R + L +RS + A+R D + E+
Sbjct: 117 EDVSEELRLKYRYLDLRRPEMQKNLKLRSKVTSAIRNFLDDNGFLEI 163
|
Length = 588 |
| >gnl|CDD|211576 TIGR00459, aspS_bact, aspartyl-tRNA synthetase, bacterial type | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 1e-09
Identities = 41/149 (27%), Positives = 70/149 (46%), Gaps = 10/149 (6%)
Query: 513 KRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRI 572
+ VT+ GWV+R R G GL+F+ LRD SG +Q V + A L E VQ +G++
Sbjct: 16 QTVTLAGWVNRRRDLG-GLIFIDLRDRSGIVQVVCDPDADALKLAKGLRNEDVVQVKGKV 74
Query: 573 EKVPEGKSAPGGHELKVDYWEVVG-----LAPAGGADAILNE-EALPDVQLDNRHIMIRG 626
PEG L E++ L + I+ + +A +V+L R++ +R
Sbjct: 75 SARPEGNINR---NLDTGEIEILAESITLLNKSKTPPLIIEKTDAEEEVRLKYRYLDLRR 131
Query: 627 ENTSRVLLMRSVLLQALRAHFADRNYTEV 655
+ L +R + +A+R + + E+
Sbjct: 132 PEMQQRLKLRHKVTKAVRNFLDQQGFLEI 160
|
Asparate--tRNA ligases in this family may be discriminating (6.1.1.12) or nondiscriminating (6.1.1.23). In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_bact, represents aspartyl-tRNA synthetases from the Bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). This model generates very low scores for the archaeal type of aspS and for asnS; scores between the trusted and noise cutoffs represent fragmentary sequences [Protein synthesis, tRNA aminoacylation]. Length = 583 |
| >gnl|CDD|239813 cd04318, EcAsnRS_like_N, EcAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli asparaginyl-tRNA synthetase (AsnRS) and, in Arabidopsis thaliana and Saccharomyces cerevisiae mitochondrial (mt) AsnRS | Back alignment and domain information |
|---|
Score = 54.5 bits (132), Expect = 2e-09
Identities = 31/84 (36%), Positives = 43/84 (51%), Gaps = 6/84 (7%)
Query: 515 VTIFGWVHRLRRQGKGLMFVTLRDGSGF--IQCVLADILCQTEHALLLSTESSVQFRGRI 572
VT+ GWV R R K + F+ L DGS +Q V+ L + L LST SS++ G +
Sbjct: 2 VTVNGWV-RSVRDSKKISFIELNDGSCLKNLQVVVDKELTNFKEILKLSTGSSIRVEGVL 60
Query: 573 EKVPEGKSAPGGHELKVDYWEVVG 596
K P K EL+ + EV+G
Sbjct: 61 VKSPGAKQP---FELQAEKIEVLG 81
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. S. cerevisiae mtAsnRS can charge E.coli tRNA with asparagines. Mutations in the gene for S. cerevisiae mtAsnRS has been found to induce a "petite" phenotype typical for a mutation in a nuclear gene that results in a non-functioning mitochondrial protein synthesis system. Length = 82 |
| >gnl|CDD|239811 cd04316, ND_PkAspRS_like_N, ND_PkAspRS_like_N: N-terminal, anticodon recognition domain of the type found in the homodimeric non-discriminating (ND) Pyrococcus kodakaraensis aspartyl-tRNA synthetase (AspRS) | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 9e-09
Identities = 27/78 (34%), Positives = 34/78 (43%), Gaps = 7/78 (8%)
Query: 513 KRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILCQTE---HALLLSTESSVQFR 569
+ VT+ GWVH +R G G+ FV LRD G +Q E LS ES +
Sbjct: 13 EEVTVAGWVHEIRDLG-GIKFVILRDREGIVQVTAPKKKVDKELFKTVRKLSRESVISVT 71
Query: 570 GRIEKVPEGKSAPGGHEL 587
G V AP G E+
Sbjct: 72 G---TVKAEPKAPNGVEI 86
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. P. kodakaraensis AspRS is a class 2b aaRS. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. P. kodakaraensis ND-AspRS can charge both tRNAAsp and tRNAAsn. Some of the enzymes in this group may be discriminating, based on the presence of homologs of asparaginyl-tRNA synthetase (AsnRS) in their completed genomes. Length = 108 |
| >gnl|CDD|239815 cd04320, AspRS_cyto_N, AspRS_cyto_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae and human cytoplasmic aspartyl-tRNA synthetase (AspRS) | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 2e-08
Identities = 24/71 (33%), Positives = 29/71 (40%), Gaps = 11/71 (15%)
Query: 515 VTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLA--------DILCQTEHALLLSTESSV 566
V I VH R QG L F+ LR IQ VLA ++ LS ES V
Sbjct: 2 VLIRARVHTSRAQGAKLAFLVLRQQGYTIQGVLAASAEGVSKQMVKWAGS---LSKESIV 58
Query: 567 QFRGRIEKVPE 577
G ++K E
Sbjct: 59 DVEGTVKKPEE 69
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. Length = 102 |
| >gnl|CDD|224111 COG1190, LysU, Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 9e-08
Identities = 66/279 (23%), Positives = 112/279 (40%), Gaps = 43/279 (15%)
Query: 194 NFFGEPAYLTQSSQLYLETCLPA-LGDVYCIAQSYRAENSRT-RRHLAEYTHVEAECAFL 251
N YL + +LYL+ + V+ I +++R N H E+T +E A+
Sbjct: 224 NALDMDLYLRIAPELYLKRLIVGGFERVFEIGRNFR--NEGIDTTHNPEFTMLEFYQAYA 281
Query: 252 TFDDLLDKLEDLICDTVDRVMATHGDLVRQMNP---NFEPPARPFLRMNYADAI------ 302
++DL+D E+LI + V +G +F PF R+ DA+
Sbjct: 282 DYEDLMDLTEELIKELAKEV---NGTTKVTYGGQEIDFSK---PFKRITMVDALKEYLGV 335
Query: 303 ------------EYLRKHEIRKPDNTEYEFGEDIPEMPERKMTDQINRPIMLCRFPADIK 350
E +KH I + G + E+ E + ++ +P + P +I
Sbjct: 336 DFDDLFDDEEAKELAKKHGIEVEKYGTWGLGHLLNELFEELVEAKLIQPTFVTDHPVEIS 395
Query: 351 SFYMSKC-PENPALTESVDVLFPNVGEVIGGSMRIWDPEE----LLAGYKRE--GIDPAP 403
+K NP LTE + LF E+ + DP + A + + G D A
Sbjct: 396 PL--AKRHRSNPGLTERFE-LFIGGKEIANAYSELNDPVDQRERFEAQVEEKEAGDDEAM 452
Query: 404 YY--WYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRD 440
+ + +YG P GG G+G++R++ L N +RD
Sbjct: 453 ELDEDFVEALEYGMPPTGGLGIGIDRLVMLLTNSPSIRD 491
|
Length = 502 |
| >gnl|CDD|215490 PLN02903, PLN02903, aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 3e-07
Identities = 41/153 (26%), Positives = 61/153 (39%), Gaps = 20/153 (13%)
Query: 513 KRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILCQTEHALL--LSTESSVQFRG 570
RVT+ GWV R G GL F+ +RD +G +Q V H L E V G
Sbjct: 73 SRVTLCGWVDLHRDMG-GLTFLDVRDHTGIVQVVTLPDEFPEAHRTANRLRNEYVVAVEG 131
Query: 571 ----RIEKVPEGKSAPGGHEL---KVDYWEVVGLA------PAGGADAILNEEALPDVQL 617
R ++ P K G E+ VD VV + A + EE V+L
Sbjct: 132 TVRSRPQESPNKKMKTGSVEVVAESVDILNVVTKSLPFLVTTADEQKDSIKEE----VRL 187
Query: 618 DNRHIMIRGENTSRVLLMRSVLLQALRAHFADR 650
R + +R + L +R +++ +R + D
Sbjct: 188 RYRVLDLRRPQMNANLRLRHRVVKLIRRYLEDV 220
|
Length = 652 |
| >gnl|CDD|239816 cd04321, ScAspRS_mt_like_N, ScAspRS_mt_like_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae mitochondrial (mt) aspartyl-tRNA synthetase (AspRS) | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 4e-07
Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 11/85 (12%)
Query: 514 RVTIFGWVHRLRRQGKGLMFVTLRDGSGF-IQCVLADILCQTEHALL--LSTESSVQFRG 570
+VT+ GW+ R R K L F LRD +G IQ L + +LL ++ ES VQ RG
Sbjct: 1 KVTLNGWIDRKPRIVKKLSFADLRDPNGDIIQ--LVSTAKKDAFSLLKSITAESPVQVRG 58
Query: 571 RIEKVPEGKSAPGGHELKVDYWEVV 595
+++ S K D WE+V
Sbjct: 59 KLQLKEAKSS------EKNDEWELV 77
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this fungal group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. Mutations in the gene for S. cerevisiae mtAspRS result in a "petite" phenotype typical for a mutation in a nuclear gene that results in a non-functioning mitochondrial protein synthesis system. Length = 86 |
| >gnl|CDD|216440 pfam01336, tRNA_anti, OB-fold nucleic acid binding domain | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 9e-07
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Query: 86 GKGLMFVTLRDGSGFIQCVL-ADILCQTEHALLLSTESSVQFRGRIEKVPEENMKVQLIH 144
G + F+TLRDG+G IQ VL + + A L V G+++K P +++L+
Sbjct: 14 GGKVAFLTLRDGTGSIQVVLFKEEA--EKLAKKLKEGDVVLVTGKVKKRPGG--ELELVV 69
Query: 145 PS 146
Sbjct: 70 EE 71
|
This family contains OB-fold domains that bind to nucleic acids. The family includes the anti-codon binding domain of lysyl, aspartyl, and asparaginyl -tRNA synthetases (See pfam00152). Aminoacyl-tRNA synthetases catalyze the addition of an amino acid to the appropriate tRNA molecule EC:6.1.1.-. This family also includes part of RecG helicase involved in DNA repair. Replication factor A is a heterotrimeric complex, that contains a subunit in this family. This domain is also found at the C-terminus of bacterial DNA polymerase III alpha chain. Length = 75 |
| >gnl|CDD|185588 PTZ00385, PTZ00385, lysyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 51.2 bits (122), Expect = 2e-06
Identities = 67/279 (24%), Positives = 114/279 (40%), Gaps = 46/279 (16%)
Query: 201 YLTQSSQLYLETCL-PALGDVYCIAQSYRAENSRTRRHLAEYTHVEAECAFLTFDDLLDK 259
+L + +L+L+ C+ + +Y I + +R E++ R H E+T E A+ T++DL+
Sbjct: 284 FLRVAPELHLKQCIVGGMERIYEIGKVFRNEDA-DRSHNPEFTSCEFYAAYHTYEDLMPM 342
Query: 260 LEDLICDTVDRVMATHGDLVRQMNPNFEPP----ARPFLRMNYADAIEYLRKHEIRKPDN 315
ED+ RV T + N + P +PF R++ D I+ + E P+
Sbjct: 343 TEDIFRQLAMRVNGTTVVQIYPENAHGNPVTVDLGKPFRRVSVYDEIQRMSGVEFPPPNE 402
Query: 316 TEYEFG----------EDIPEMPER---KM---------TDQINRPIMLCRFPADIKSFY 353
G +IP P R KM TD++ P + P +
Sbjct: 403 LNTPKGIAYMSVVMLRYNIPLPPVRTAAKMFEKLIDFFITDRVVEPTFVMDHP-----LF 457
Query: 354 MSKCPEN----PALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGID-------PA 402
MS + P L E + LF N E + DP E ++++ +D
Sbjct: 458 MSPLAKEQVSRPGLAERFE-LFVNGIEYCNAYSELNDPHEQYHRFQQQLVDRQGGDEEAM 516
Query: 403 PY-YWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRD 440
P + + G P G+G+G++R L L N ++RD
Sbjct: 517 PLDETFLKSLQVGLPPTAGWGMGIDRALMLLTNSSNIRD 555
|
Length = 659 |
| >gnl|CDD|105955 PRK12820, PRK12820, bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional | Back alignment and domain information |
|---|
Score = 50.4 bits (120), Expect = 3e-06
Identities = 47/169 (27%), Positives = 69/169 (40%), Gaps = 35/169 (20%)
Query: 513 KRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVL------ADILCQTEHALLLSTESSV 566
+ V + GWV R G L+F+ LRD +GFIQ V AD+ E A L E V
Sbjct: 19 REVCLAGWVDAFRDHG-ELLFIHLRDRNGFIQAVFSPEAAPADVY---ELAASLRAEFCV 74
Query: 567 QFRGRIEKVPEGKSAP----GGHELKVDYWEV----------------VGLAPAGGADAI 606
+G ++K E P G E+ V + A + GADA+
Sbjct: 75 ALQGEVQKRLEETENPHIETGDIEVFVRELSILAASEALPFAISDKAMTAGAGSAGADAV 134
Query: 607 LNEEALPDVQLDNRHIMIRGENTSRVLLMRSVLLQALRAHFADRNYTEV 655
NE D++L R++ IR L R +++ R R + E+
Sbjct: 135 -NE----DLRLQYRYLDIRRPAMQDHLAKRHRIIKCARDFLDSRGFLEI 178
|
Length = 706 |
| >gnl|CDD|211576 TIGR00459, aspS_bact, aspartyl-tRNA synthetase, bacterial type | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 1e-05
Identities = 65/277 (23%), Positives = 107/277 (38%), Gaps = 72/277 (25%)
Query: 88 GLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEENMKVQL----- 142
GL+F+ LRD SG +Q V + A L E VQ +G++ PE N+ L
Sbjct: 32 GLIFIDLRDRSGIVQVVCDPDADALKLAKGLRNEDVVQVKGKVSARPEGNINRNLDTGEI 91
Query: 143 -IHPSSYAIVWLGDLKQGGYPP----------------------------------EVSL 167
I S + L + PP +V+
Sbjct: 92 EILAESITL-----LNKSKTPPLIIEKTDAEEEVRLKYRYLDLRRPEMQQRLKLRHKVTK 146
Query: 168 A-------NGIAKVTPPTLVQTQVEGGSTLFSLNFFGEPAY--LTQSSQLYLETCLPALG 218
A G ++ P L ++ EG + + + L QS QL+ + + +
Sbjct: 147 AVRNFLDQQGFLEIETPMLTKSTPEGARDYLVPSRVHKGEFYALPQSPQLFKQLLMVSGV 206
Query: 219 DVYC-IAQSYRAENSRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGD 277
D Y IA+ +R E+ R R E+T ++ E +F+T +D+++ +E L+ V D
Sbjct: 207 DRYYQIARCFRDEDLRADRQ-PEFTQIDMEMSFMTQEDVMELIEKLVSHVFLEVKGI--D 263
Query: 278 LVRQMNPNFEPPARPFLRMNYADAIEYLRKHEIRKPD 314
L +PF M YA+A + ++ KPD
Sbjct: 264 L-----------KKPFPVMTYAEA---MERYGSDKPD 286
|
Asparate--tRNA ligases in this family may be discriminating (6.1.1.12) or nondiscriminating (6.1.1.23). In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_bact, represents aspartyl-tRNA synthetases from the Bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). This model generates very low scores for the archaeal type of aspS and for asnS; scores between the trusted and noise cutoffs represent fragmentary sequences [Protein synthesis, tRNA aminoacylation]. Length = 583 |
| >gnl|CDD|215490 PLN02903, PLN02903, aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 1e-05
Identities = 35/114 (30%), Positives = 52/114 (45%), Gaps = 18/114 (15%)
Query: 202 LTQSSQLYLETCLPALGD-VYCIAQSYRAENSRTRRHLAEYTHVEAECAFLTFDDLLDKL 260
L QS QL+ + + + D Y IA+ +R E+ R R E+T ++ E AF +D+L
Sbjct: 256 LPQSPQLFKQMLMVSGFDRYYQIARCFRDEDLRADRQ-PEFTQLDMELAFTPLEDMLKLN 314
Query: 261 EDLICDTVDRVMATHGDLVRQMNPNFEPPARPFLRMNYADAIEYLRKHEIRKPD 314
EDLI + L PF R+ YA+A+ K+ KPD
Sbjct: 315 EDLIRQVFKEIKGV--QL-----------PNPFPRLTYAEAMS---KYGSDKPD 352
|
Length = 652 |
| >gnl|CDD|173607 PTZ00417, PTZ00417, lysine-tRNA ligase; Provisional | Back alignment and domain information |
|---|
Score = 48.1 bits (114), Expect = 1e-05
Identities = 65/275 (23%), Positives = 118/275 (42%), Gaps = 39/275 (14%)
Query: 201 YLTQSSQLYLETCL-PALGDVYCIAQSYRAENSRTRRHLAEYTHVEAECAFLTFDDLLDK 259
YL +++L L+ + + VY I + +R E H E+T E A+ F DL+
Sbjct: 304 YLRIATELPLKMLIVGGIDKVYEIGKVFRNEGI-DNTHNPEFTSCEFYWAYADFYDLIKW 362
Query: 260 LEDLICDTVDRVMATHGDLVRQMNPNFEPP----ARPFLRMNYADAIEYLRKHEIRKP-D 314
ED V + T+ L + P +P P+ +++ + +E L ++ +P D
Sbjct: 363 SEDFFSQLVMHLFGTYKILYNKDGPEKDPIEIDFTPPYPKVSIVEELEKLTNTKLEQPFD 422
Query: 315 NTEY------EFGEDIPEMPE----RKMTDQINRPIMLCRFPADIKSFYMSKCPE----- 359
+ E E+ EMP K+ DQ+ + ++P K F++ + P+
Sbjct: 423 SPETINKMINLIKENKIEMPNPPTAAKLLDQLASHFIENKYPN--KPFFIIEHPQIMSPL 480
Query: 360 ------NPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYK-----REGIDPAPYYW-- 406
P LTE ++ +F EV+ + DP + + RE D + +
Sbjct: 481 AKYHRSKPGLTERLE-MFICGKEVLNAYTELNDPFKQKECFSAQQKDREKGDAEAFQFDA 539
Query: 407 -YTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRD 440
+ +YG P GG GLG++R+ +L N+ ++D
Sbjct: 540 AFCTSLEYGLPPTGGLGLGIDRITMFLTNKNCIKD 574
|
Length = 585 |
| >gnl|CDD|211576 TIGR00459, aspS_bact, aspartyl-tRNA synthetase, bacterial type | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 2e-05
Identities = 33/86 (38%), Positives = 47/86 (54%), Gaps = 7/86 (8%)
Query: 360 NPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGIDPAP----YYWYTDQRKYGS 415
AL E+ D++ V E+ GGS+RI DPE ++ GIDP + + + KYG+
Sbjct: 463 EEALAEAYDLVLNGV-ELGGGSIRIHDPEVQKKVFEILGIDPEEAREKFGFLLEAFKYGT 521
Query: 416 TPHGGYGLGLERVLCWLLNQYH-VRD 440
PH G+ LGL+R L LL +RD
Sbjct: 522 PPHAGFALGLDR-LMMLLTGTDNIRD 546
|
Asparate--tRNA ligases in this family may be discriminating (6.1.1.12) or nondiscriminating (6.1.1.23). In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_bact, represents aspartyl-tRNA synthetases from the Bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). This model generates very low scores for the archaeal type of aspS and for asnS; scores between the trusted and noise cutoffs represent fragmentary sequences [Protein synthesis, tRNA aminoacylation]. Length = 583 |
| >gnl|CDD|171504 PRK12445, PRK12445, lysyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 47.4 bits (112), Expect = 2e-05
Identities = 59/270 (21%), Positives = 112/270 (41%), Gaps = 40/270 (14%)
Query: 201 YLTQSSQLYLET-CLPALGDVYCIAQSYRAENSRTRRHLAEYTHVEAECAFLTFDDLLDK 259
YL + +LYL+ + V+ I +++R E R H E+T +E A+ + DL++
Sbjct: 235 YLRIAPELYLKRLVVGGFERVFEINRNFRNEGISVR-HNPEFTMMELYMAYADYHDLIEL 293
Query: 260 LEDLICDTVDRVMAT----HGDLVRQMNPNFEPPARPFLRMNYADAIEYLR-KHEIRKPD 314
E L V+ T +G+ V +PF ++ +AI+ R + ++ D
Sbjct: 294 TESLFRTLAQEVLGTTKVTYGEHVFDF-------GKPFEKLTMREAIKKYRPETDMADLD 346
Query: 315 NTE----------------YEFGEDIPEMPERKMTDQINRPIMLCRFPADIKSFYMSKCP 358
N + + G + E+ + + +P + +PA++ +
Sbjct: 347 NFDAAKALAESIGITVEKSWGLGRIVTEIFDEVAEAHLIQPTFITEYPAEVSPL-ARRND 405
Query: 359 ENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGY------KREGIDPAPYYW--YTDQ 410
NP +T+ + F E+ G + D E+ + K G D A +Y Y
Sbjct: 406 VNPEITDRFE-FFIGGREIGNGFSELNDAEDQAERFQEQVNAKAAGDDEAMFYDEDYVTA 464
Query: 411 RKYGSTPHGGYGLGLERVLCWLLNQYHVRD 440
+YG P G G+G++R++ N + +RD
Sbjct: 465 LEYGLPPTAGLGIGIDRMIMLFTNSHTIRD 494
|
Length = 505 |
| >gnl|CDD|238399 cd00776, AsxRS_core, Asx tRNA synthetase (AspRS/AsnRS) class II core domain | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 9e-05
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 613 PDVQLDNRHIMIRGENTSRVLLMRSVLLQALRAHFADRNYTEVN 656
+ LDNRH+ +R + +RS +L+A R + +TEV+
Sbjct: 4 LETLLDNRHLDLRTPKVQAIFRIRSEVLRAFREFLRENGFTEVH 47
|
Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Length = 322 |
| >gnl|CDD|215753 pfam00152, tRNA-synt_2, tRNA synthetases class II (D, K and N) | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 1e-04
Identities = 11/44 (25%), Positives = 23/44 (52%)
Query: 613 PDVQLDNRHIMIRGENTSRVLLMRSVLLQALRAHFADRNYTEVN 656
+ +L R++ +R L +RS +++A+R +R + EV
Sbjct: 2 EETRLKYRYLDLRRPKMQANLKLRSKIIKAIREFLDERGFLEVE 45
|
Length = 345 |
| >gnl|CDD|235095 PRK02983, lysS, lysyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 2e-04
Identities = 40/158 (25%), Positives = 64/158 (40%), Gaps = 30/158 (18%)
Query: 512 DKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILCQTE------HALLLSTESS 565
+ V++ G V R+R G G++F LRD SG +Q +L + A+ L
Sbjct: 651 GEEVSVSGRVLRIRDYG-GVLFADLRDWSGELQVLLDASRLEQGSLADFRAAVDLGDLVE 709
Query: 566 VQFRGRIEKVPEGKSAPGGHELKVDYWEVVG--LAP-----AGGADAILNEEALPDVQLD 618
V G + G S G L V W + G L P G D P+ ++
Sbjct: 710 VT--GTM-----GTSRNGTLSLLVTSWRLAGKCLRPLPDKWKGLTD--------PEARVR 754
Query: 619 NRHI-MIRGENTSRVLLMRSVLLQALRAHFADRNYTEV 655
R++ + +L RS +++A+R R + EV
Sbjct: 755 QRYLDLAVNPEARDLLRARSAVVRAVRETLVARGFLEV 792
|
Length = 1094 |
| >gnl|CDD|223251 COG0173, AspS, Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 4e-04
Identities = 33/114 (28%), Positives = 58/114 (50%), Gaps = 18/114 (15%)
Query: 202 LTQSSQLYLETCLPALGDVYC-IAQSYRAENSRTRRHLAEYTHVEAECAFLTFDDLLDKL 260
L QS QL+ + + A D Y IA+ +R E+ R R E+T ++ E +F+ +D+++ +
Sbjct: 193 LPQSPQLFKQLLMVAGFDRYYQIARCFRDEDLRADR-QPEFTQIDLEMSFVDEEDVMELI 251
Query: 261 EDLICDTVDRVMATHGDLVRQMNPNFEPPARPFLRMNYADAIEYLRKHEIRKPD 314
E L+ + +++ E PF RM YA+A+ R++ KPD
Sbjct: 252 EKLLR-----------YVFKEVK-GIELKT-PFPRMTYAEAM---RRYGSDKPD 289
|
Length = 585 |
| >gnl|CDD|215456 PLN02850, PLN02850, aspartate-tRNA ligase | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 0.001
Identities = 36/137 (26%), Positives = 57/137 (41%), Gaps = 10/137 (7%)
Query: 446 AKAQLKKVSKLAARDNAKSESKAKKEEEDAEKREKNLEEAKKIVLKEDPSLPPAVRIKIK 505
AK K KL AK+ + + ++E+D N + L+ + +
Sbjct: 18 AKKAAAKAEKLRREATAKAAAASLEDEDDPLA--SNYGDVPLEELQSKVTGREWTDVS-D 74
Query: 506 DGEKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVL-ADILCQTEH----ALLL 560
GE+ V I G VH +R +GK F+ LR +QCV+ + ++ A L
Sbjct: 75 LGEELAGSEVLIRGRVHTIRGKGKSA-FLVLRQSGFTVQCVVFVSEVTVSKGMVKYAKQL 133
Query: 561 STESSVQFRGRIEKVPE 577
S ES V G + VP+
Sbjct: 134 SRESVVDVEG-VVSVPK 149
|
Length = 530 |
| >gnl|CDD|239812 cd04317, EcAspRS_like_N, EcAspRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli aspartyl-tRNA synthetase (AspRS), the human mitochondrial (mt) AspRS-2, the discriminating (D) Thermus thermophilus AspRS-1, and the nondiscriminating (ND) Helicobacter pylori AspRS | Back alignment and domain information |
|---|
Score = 38.3 bits (90), Expect = 0.003
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 88 GLMFVTLRDGSGFIQCVLA-DILCQTEHALLLSTESSVQFRGRIEKVPEEN 137
GL+F+ LRD G +Q V + + E A L ES +Q G++ PE
Sbjct: 31 GLIFIDLRDRYGIVQVVFDPEEAPEFELAEKLRNESVIQVTGKVRARPEGT 81
|
These homodimeric enzymes are class2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic synthesis, whereas the other exclusively with mitochondrial protein synthesis. Human mtAspRS participates in mitochondrial biosynthesis; this enzyme been shown to charge E.coli native tRNAsp in addition to in vitro transcribed human mitochondrial tRNAsp. T. thermophilus is rare among bacteria in having both a D_AspRS and a ND_AspRS. H.pylori ND-AspRS can charge both tRNAASp and tRNAAsn, it is fractionally more efficient at aminoacylating tRNAAsp over tRNAAsn. The H.pylori genome does not contain AsnRS. Length = 135 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 658 | |||
| COG0017 | 435 | AsnS Aspartyl/asparaginyl-tRNA synthetases [Transl | 100.0 | |
| COG1190 | 502 | LysU Lysyl-tRNA synthetase (class II) [Translation | 100.0 | |
| TIGR00458 | 428 | aspS_arch aspartyl-tRNA synthetase, archaeal type. | 100.0 | |
| TIGR00499 | 496 | lysS_bact lysyl-tRNA synthetase, eukaryotic and no | 100.0 | |
| PRK05159 | 437 | aspC aspartyl-tRNA synthetase; Provisional | 100.0 | |
| PRK12445 | 505 | lysyl-tRNA synthetase; Reviewed | 100.0 | |
| PLN02502 | 553 | lysyl-tRNA synthetase | 100.0 | |
| TIGR00457 | 453 | asnS asparaginyl-tRNA synthetase. In a multiple se | 100.0 | |
| PRK00484 | 491 | lysS lysyl-tRNA synthetase; Reviewed | 100.0 | |
| PTZ00425 | 586 | asparagine-tRNA ligase; Provisional | 100.0 | |
| PLN02221 | 572 | asparaginyl-tRNA synthetase | 100.0 | |
| PLN02603 | 565 | asparaginyl-tRNA synthetase | 100.0 | |
| PLN02532 | 633 | asparagine-tRNA synthetase | 100.0 | |
| PRK03932 | 450 | asnC asparaginyl-tRNA synthetase; Validated | 100.0 | |
| PTZ00385 | 659 | lysyl-tRNA synthetase; Provisional | 100.0 | |
| PTZ00401 | 550 | aspartyl-tRNA synthetase; Provisional | 100.0 | |
| PTZ00417 | 585 | lysine-tRNA ligase; Provisional | 100.0 | |
| PLN02850 | 530 | aspartate-tRNA ligase | 100.0 | |
| KOG1885|consensus | 560 | 100.0 | ||
| PRK02983 | 1094 | lysS lysyl-tRNA synthetase; Provisional | 100.0 | |
| KOG0555|consensus | 545 | 100.0 | ||
| TIGR00459 | 583 | aspS_bact aspartyl-tRNA synthetase, bacterial type | 100.0 | |
| COG0173 | 585 | AspS Aspartyl-tRNA synthetase [Translation, riboso | 100.0 | |
| KOG0556|consensus | 533 | 100.0 | ||
| PLN02903 | 652 | aminoacyl-tRNA ligase | 100.0 | |
| PRK00476 | 588 | aspS aspartyl-tRNA synthetase; Validated | 100.0 | |
| cd00776 | 322 | AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class | 100.0 | |
| PRK12820 | 706 | bifunctional aspartyl-tRNA synthetase/aspartyl/glu | 100.0 | |
| KOG0554|consensus | 446 | 100.0 | ||
| PRK06462 | 335 | asparagine synthetase A; Reviewed | 100.0 | |
| PF00152 | 335 | tRNA-synt_2: tRNA synthetases class II (D, K and N | 100.0 | |
| KOG2411|consensus | 628 | 100.0 | ||
| TIGR00462 | 304 | genX lysyl-tRNA synthetase-like protein GenX. Many | 100.0 | |
| cd00775 | 329 | LysRS_core Lys_tRNA synthetase (LysRS) class II co | 100.0 | |
| cd00669 | 269 | Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase cl | 100.0 | |
| PRK09350 | 306 | poxB regulator PoxA; Provisional | 100.0 | |
| cd00777 | 280 | AspRS_core Asp tRNA synthetase (aspRS) class II co | 100.0 | |
| COG2269 | 322 | Truncated, possibly inactive, lysyl-tRNA synthetas | 100.0 | |
| KOG0555|consensus | 545 | 100.0 | ||
| KOG1885|consensus | 560 | 99.97 | ||
| PLN02502 | 553 | lysyl-tRNA synthetase | 99.97 | |
| PLN02850 | 530 | aspartate-tRNA ligase | 99.97 | |
| PTZ00401 | 550 | aspartyl-tRNA synthetase; Provisional | 99.97 | |
| COG0173 | 585 | AspS Aspartyl-tRNA synthetase [Translation, riboso | 99.96 | |
| PRK00484 | 491 | lysS lysyl-tRNA synthetase; Reviewed | 99.96 | |
| PRK12445 | 505 | lysyl-tRNA synthetase; Reviewed | 99.96 | |
| PTZ00417 | 585 | lysine-tRNA ligase; Provisional | 99.96 | |
| TIGR00499 | 496 | lysS_bact lysyl-tRNA synthetase, eukaryotic and no | 99.95 | |
| KOG0556|consensus | 533 | 99.95 | ||
| TIGR00459 | 583 | aspS_bact aspartyl-tRNA synthetase, bacterial type | 99.95 | |
| COG0017 | 435 | AsnS Aspartyl/asparaginyl-tRNA synthetases [Transl | 99.95 | |
| PLN02903 | 652 | aminoacyl-tRNA ligase | 99.94 | |
| COG1190 | 502 | LysU Lysyl-tRNA synthetase (class II) [Translation | 99.94 | |
| PRK00476 | 588 | aspS aspartyl-tRNA synthetase; Validated | 99.94 | |
| PRK02983 | 1094 | lysS lysyl-tRNA synthetase; Provisional | 99.94 | |
| PRK05159 | 437 | aspC aspartyl-tRNA synthetase; Provisional | 99.94 | |
| PRK12820 | 706 | bifunctional aspartyl-tRNA synthetase/aspartyl/glu | 99.94 | |
| TIGR00458 | 428 | aspS_arch aspartyl-tRNA synthetase, archaeal type. | 99.94 | |
| PTZ00385 | 659 | lysyl-tRNA synthetase; Provisional | 99.93 | |
| PLN02221 | 572 | asparaginyl-tRNA synthetase | 99.93 | |
| PRK03932 | 450 | asnC asparaginyl-tRNA synthetase; Validated | 99.93 | |
| TIGR00457 | 453 | asnS asparaginyl-tRNA synthetase. In a multiple se | 99.92 | |
| PTZ00425 | 586 | asparagine-tRNA ligase; Provisional | 99.91 | |
| PLN02603 | 565 | asparaginyl-tRNA synthetase | 99.91 | |
| PLN02532 | 633 | asparagine-tRNA synthetase | 99.85 | |
| cd04317 | 135 | EcAspRS_like_N EcAspRS_like_N: N-terminal, anticod | 99.85 | |
| cd04322 | 108 | LysRS_N LysRS_N: N-terminal, anticodon recognition | 99.82 | |
| KOG2411|consensus | 628 | 99.82 | ||
| cd04319 | 103 | PhAsnRS_like_N PhAsnRS_like_N: N-terminal, anticod | 99.74 | |
| KOG0554|consensus | 446 | 99.71 | ||
| cd04320 | 102 | AspRS_cyto_N AspRS_cyto_N: N-terminal, anticodon r | 99.67 | |
| cd04316 | 108 | ND_PkAspRS_like_N ND_PkAspRS_like_N: N-terminal, a | 99.65 | |
| cd04321 | 86 | ScAspRS_mt_like_N ScAspRS_mt_like_N: N-terminal, a | 99.63 | |
| cd04100 | 85 | Asp_Lys_Asn_RS_N Asp_Lys_Asn_RS_N: N-terminal, ant | 99.62 | |
| cd04323 | 84 | AsnRS_cyto_like_N AsnRS_cyto_like_N: N-terminal, a | 99.61 | |
| cd04318 | 82 | EcAsnRS_like_N EcAsnRS_like_N: N-terminal, anticod | 99.55 | |
| TIGR02367 | 453 | PylS pyrrolysyl-tRNA synthetase. PylS is the archa | 99.45 | |
| cd00645 | 309 | AsnA Asparagine synthetase (aspartate-ammonia liga | 99.42 | |
| PRK09537 | 417 | pylS pyrolysyl-tRNA synthetase; Reviewed | 99.42 | |
| cd00768 | 211 | class_II_aaRS-like_core Class II tRNA amino-acyl s | 99.38 | |
| cd04317 | 135 | EcAspRS_like_N EcAspRS_like_N: N-terminal, anticod | 99.36 | |
| PTZ00213 | 348 | asparagine synthetase A; Provisional | 99.36 | |
| PRK05425 | 327 | asparagine synthetase AsnA; Provisional | 99.35 | |
| PF01409 | 247 | tRNA-synt_2d: tRNA synthetases class II core domai | 99.32 | |
| cd04322 | 108 | LysRS_N LysRS_N: N-terminal, anticodon recognition | 99.25 | |
| PRK00488 | 339 | pheS phenylalanyl-tRNA synthetase subunit alpha; V | 99.22 | |
| TIGR00669 | 330 | asnA aspartate--ammonia ligase, AsnA-type. The fac | 99.21 | |
| cd04321 | 86 | ScAspRS_mt_like_N ScAspRS_mt_like_N: N-terminal, a | 99.2 | |
| cd04320 | 102 | AspRS_cyto_N AspRS_cyto_N: N-terminal, anticodon r | 99.15 | |
| cd04316 | 108 | ND_PkAspRS_like_N ND_PkAspRS_like_N: N-terminal, a | 99.13 | |
| cd04100 | 85 | Asp_Lys_Asn_RS_N Asp_Lys_Asn_RS_N: N-terminal, ant | 99.13 | |
| cd04318 | 82 | EcAsnRS_like_N EcAsnRS_like_N: N-terminal, anticod | 99.12 | |
| cd04323 | 84 | AsnRS_cyto_like_N AsnRS_cyto_like_N: N-terminal, a | 99.08 | |
| PTZ00326 | 494 | phenylalanyl-tRNA synthetase alpha chain; Provisio | 99.07 | |
| COG0016 | 335 | PheS Phenylalanyl-tRNA synthetase alpha subunit [T | 99.05 | |
| cd04319 | 103 | PhAsnRS_like_N PhAsnRS_like_N: N-terminal, anticod | 99.03 | |
| PLN02853 | 492 | Probable phenylalanyl-tRNA synthetase alpha chain | 98.99 | |
| PF01336 | 75 | tRNA_anti-codon: OB-fold nucleic acid binding doma | 98.96 | |
| TIGR00468 | 294 | pheS phenylalanyl-tRNA synthetase, alpha subunit. | 98.8 | |
| PRK04172 | 489 | pheS phenylalanyl-tRNA synthetase subunit alpha; P | 98.68 | |
| TIGR00470 | 533 | sepS O-phosphoseryl-tRNA(Cys) synthetase. This fam | 98.54 | |
| PLN02788 | 402 | phenylalanine-tRNA synthetase | 98.54 | |
| PF01336 | 75 | tRNA_anti-codon: OB-fold nucleic acid binding doma | 98.33 | |
| cd00773 | 261 | HisRS-like_core Class II Histidinyl-tRNA synthetas | 98.32 | |
| cd00496 | 218 | PheRS_alpha_core Phenylalanyl-tRNA synthetase (Phe | 98.27 | |
| TIGR00469 | 460 | pheS_mito phenylalanyl-tRNA synthetase, mitochondr | 98.2 | |
| PF00587 | 173 | tRNA-synt_2b: tRNA synthetase class II core domain | 97.98 | |
| cd00779 | 255 | ProRS_core_prok Prolyl-tRNA synthetase (ProRS) cla | 97.57 | |
| cd00670 | 235 | Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_t | 97.51 | |
| cd00772 | 264 | ProRS_core Prolyl-tRNA synthetase (ProRS) class II | 97.51 | |
| cd00778 | 261 | ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) | 97.44 | |
| COG2502 | 330 | AsnA Asparagine synthetase A [Amino acid transport | 97.41 | |
| TIGR00409 | 568 | proS_fam_II prolyl-tRNA synthetase, family II. Pro | 97.35 | |
| PRK09194 | 565 | prolyl-tRNA synthetase; Provisional | 97.29 | |
| cd00771 | 298 | ThrRS_core Threonyl-tRNA synthetase (ThrRS) class | 97.26 | |
| TIGR00442 | 397 | hisS histidyl-tRNA synthetase. This model finds a | 97.24 | |
| PRK05431 | 425 | seryl-tRNA synthetase; Provisional | 97.21 | |
| TIGR00414 | 418 | serS seryl-tRNA synthetase. This model represents | 97.14 | |
| KOG2784|consensus | 483 | 97.13 | ||
| PRK00037 | 412 | hisS histidyl-tRNA synthetase; Reviewed | 97.13 | |
| PRK12444 | 639 | threonyl-tRNA synthetase; Reviewed | 97.08 | |
| cd00774 | 254 | GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-lik | 97.06 | |
| PLN02908 | 686 | threonyl-tRNA synthetase | 97.04 | |
| cd04487 | 73 | RecJ_OBF2_like RecJ_OBF2_like: A subfamily of OB f | 96.92 | |
| PRK03991 | 613 | threonyl-tRNA synthetase; Validated | 96.83 | |
| cd04489 | 78 | ExoVII_LU_OBF ExoVII_LU_OBF: A subfamily of OB fol | 96.81 | |
| cd00770 | 297 | SerRS_core Seryl-tRNA synthetase (SerRS) class II | 96.8 | |
| PRK00413 | 638 | thrS threonyl-tRNA synthetase; Reviewed | 96.68 | |
| PRK14799 | 545 | thrS threonyl-tRNA synthetase; Provisional | 96.65 | |
| PRK12305 | 575 | thrS threonyl-tRNA synthetase; Reviewed | 96.64 | |
| TIGR00408 | 472 | proS_fam_I prolyl-tRNA synthetase, family I. Proly | 96.6 | |
| TIGR00418 | 563 | thrS threonyl-tRNA synthetase. This model represen | 96.56 | |
| PRK08661 | 477 | prolyl-tRNA synthetase; Provisional | 96.51 | |
| PRK12325 | 439 | prolyl-tRNA synthetase; Provisional | 96.34 | |
| PF13742 | 99 | tRNA_anti_2: OB-fold nucleic acid binding domain | 96.25 | |
| CHL00201 | 430 | syh histidine-tRNA synthetase; Provisional | 96.22 | |
| PRK12292 | 391 | hisZ ATP phosphoribosyltransferase regulatory subu | 96.2 | |
| cd04478 | 95 | RPA2_DBD_D RPA2_DBD_D: A subfamily of OB folds cor | 96.15 | |
| PLN02837 | 614 | threonine-tRNA ligase | 96.08 | |
| PRK12293 | 281 | hisZ ATP phosphoribosyltransferase regulatory subu | 96.08 | |
| TIGR00443 | 314 | hisZ_biosyn_reg ATP phosphoribosyltransferase, reg | 95.97 | |
| cd04489 | 78 | ExoVII_LU_OBF ExoVII_LU_OBF: A subfamily of OB fol | 95.89 | |
| PLN02678 | 448 | seryl-tRNA synthetase | 95.88 | |
| PRK12421 | 392 | ATP phosphoribosyltransferase regulatory subunit; | 95.87 | |
| cd04482 | 91 | RPA2_OBF_like RPA2_OBF_like: A subgroup of unchara | 95.78 | |
| PF13393 | 311 | tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI | 95.78 | |
| PLN02530 | 487 | histidine-tRNA ligase | 95.7 | |
| PLN02972 | 763 | Histidyl-tRNA synthetase | 95.36 | |
| COG0124 | 429 | HisS Histidyl-tRNA synthetase [Translation, riboso | 95.27 | |
| PRK12420 | 423 | histidyl-tRNA synthetase; Provisional | 95.19 | |
| COG1107 | 715 | Archaea-specific RecJ-like exonuclease, contains D | 95.15 | |
| cd04485 | 84 | DnaE_OBF DnaE_OBF: A subfamily of OB folds corresp | 95.04 | |
| PRK12295 | 373 | hisZ ATP phosphoribosyltransferase regulatory subu | 95.03 | |
| PRK09537 | 417 | pylS pyrolysyl-tRNA synthetase; Reviewed | 94.9 | |
| PLN02320 | 502 | seryl-tRNA synthetase | 94.9 | |
| PRK04173 | 456 | glycyl-tRNA synthetase; Provisional | 94.89 | |
| cd04483 | 92 | hOBFC1_like hOBFC1_like: A subfamily of OB folds s | 94.85 | |
| cd04492 | 83 | YhaM_OBF_like YhaM_OBF_like: A subfamily of OB fol | 94.66 | |
| cd04487 | 73 | RecJ_OBF2_like RecJ_OBF2_like: A subfamily of OB f | 94.26 | |
| cd03524 | 75 | RPA2_OBF_family RPA2_OBF_family: A family of oligo | 94.24 | |
| PF04076 | 103 | BOF: Bacterial OB fold (BOF) protein; InterPro: IP | 93.7 | |
| PRK07373 | 449 | DNA polymerase III subunit alpha; Reviewed | 93.63 | |
| COG4085 | 204 | Predicted RNA-binding protein, contains TRAM domai | 93.57 | |
| PF10451 | 256 | Stn1: Telomere regulation protein Stn1; InterPro: | 93.55 | |
| PF13742 | 99 | tRNA_anti_2: OB-fold nucleic acid binding domain | 93.5 | |
| COG3111 | 128 | Periplasmic protein with OB-fold [Function unknown | 93.34 | |
| COG4085 | 204 | Predicted RNA-binding protein, contains TRAM domai | 93.24 | |
| cd04479 | 101 | RPA3 RPA3: A subfamily of OB folds similar to huma | 93.16 | |
| cd04478 | 95 | RPA2_DBD_D RPA2_DBD_D: A subfamily of OB folds cor | 93.09 | |
| PRK00960 | 517 | seryl-tRNA synthetase; Provisional | 93.0 | |
| TIGR00415 | 520 | serS_MJ seryl-tRNA synthetase, Methanococcus janna | 92.9 | |
| cd04490 | 79 | PolII_SU_OBF PolII_SU_OBF: A subfamily of OB folds | 92.64 | |
| cd03524 | 75 | RPA2_OBF_family RPA2_OBF_family: A family of oligo | 92.16 | |
| COG0172 | 429 | SerS Seryl-tRNA synthetase [Translation, ribosomal | 91.94 | |
| PRK09616 | 552 | pheT phenylalanyl-tRNA synthetase subunit beta; Re | 91.92 | |
| cd04482 | 91 | RPA2_OBF_like RPA2_OBF_like: A subgroup of unchara | 91.49 | |
| PRK06826 | 1151 | dnaE DNA polymerase III DnaE; Reviewed | 91.46 | |
| PRK12294 | 272 | hisZ ATP phosphoribosyltransferase regulatory subu | 91.33 | |
| TIGR00156 | 126 | conserved hypothetical protein TIGR00156. As of th | 91.32 | |
| PF12869 | 144 | tRNA_anti-like: tRNA_anti-like; InterPro: IPR02442 | 91.28 | |
| PF04076 | 103 | BOF: Bacterial OB fold (BOF) protein; InterPro: IP | 90.88 | |
| PRK10053 | 130 | hypothetical protein; Provisional | 90.82 | |
| cd04485 | 84 | DnaE_OBF DnaE_OBF: A subfamily of OB folds corresp | 90.77 | |
| cd04484 | 82 | polC_OBF polC_OBF: A subfamily of OB folds corresp | 90.75 | |
| COG3111 | 128 | Periplasmic protein with OB-fold [Function unknown | 90.69 | |
| PRK07374 | 1170 | dnaE DNA polymerase III subunit alpha; Validated | 90.59 | |
| PRK06920 | 1107 | dnaE DNA polymerase III DnaE; Reviewed | 90.46 | |
| cd04483 | 92 | hOBFC1_like hOBFC1_like: A subfamily of OB folds s | 90.28 | |
| PRK05672 | 1046 | dnaE2 error-prone DNA polymerase; Validated | 90.17 | |
| COG1570 | 440 | XseA Exonuclease VII, large subunit [DNA replicati | 89.9 | |
| PRK05673 | 1135 | dnaE DNA polymerase III subunit alpha; Validated | 89.03 | |
| cd04488 | 75 | RecG_wedge_OBF RecG_wedge_OBF: A subfamily of OB f | 88.93 | |
| COG0442 | 500 | ProS Prolyl-tRNA synthetase [Translation, ribosoma | 88.7 | |
| cd04474 | 104 | RPA1_DBD_A RPA1_DBD_A: A subfamily of OB folds cor | 88.67 | |
| TIGR00156 | 126 | conserved hypothetical protein TIGR00156. As of th | 88.37 | |
| PRK07279 | 1034 | dnaE DNA polymerase III DnaE; Reviewed | 88.13 | |
| cd04490 | 79 | PolII_SU_OBF PolII_SU_OBF: A subfamily of OB folds | 88.13 | |
| PRK07373 | 449 | DNA polymerase III subunit alpha; Reviewed | 87.7 | |
| cd04492 | 83 | YhaM_OBF_like YhaM_OBF_like: A subfamily of OB fol | 87.52 | |
| PF08661 | 109 | Rep_fac-A_3: Replication factor A protein 3; Inter | 86.33 | |
| TIGR00237 | 432 | xseA exodeoxyribonuclease VII, large subunit. This | 86.3 | |
| PRK00286 | 438 | xseA exodeoxyribonuclease VII large subunit; Revie | 85.56 | |
| COG5235 | 258 | RFA2 Single-stranded DNA-binding replication prote | 85.25 | |
| COG1107 | 715 | Archaea-specific RecJ-like exonuclease, contains D | 84.72 | |
| PF03100 | 131 | CcmE: CcmE; InterPro: IPR004329 CcmE is the produc | 84.47 | |
| PRK10053 | 130 | hypothetical protein; Provisional | 84.39 | |
| PRK13254 | 148 | cytochrome c-type biogenesis protein CcmE; Reviewe | 83.47 | |
| cd04488 | 75 | RecG_wedge_OBF RecG_wedge_OBF: A subfamily of OB f | 83.43 | |
| PF12869 | 144 | tRNA_anti-like: tRNA_anti-like; InterPro: IPR02442 | 83.06 | |
| PRK07459 | 121 | single-stranded DNA-binding protein; Provisional | 82.95 | |
| PRK06826 | 1151 | dnaE DNA polymerase III DnaE; Reviewed | 82.29 | |
| KOG2783|consensus | 436 | 82.21 | ||
| TIGR00344 | 851 | alaS alanine--tRNA ligase. The model describes ala | 82.12 | |
| PF00436 | 104 | SSB: Single-strand binding protein family; InterPr | 81.88 | |
| PRK13480 | 314 | 3'-5' exoribonuclease YhaM; Provisional | 81.84 | |
| PRK06863 | 168 | single-stranded DNA-binding protein; Provisional | 81.56 | |
| COG0441 | 589 | ThrS Threonyl-tRNA synthetase [Translation, riboso | 81.47 | |
| PRK05672 | 1046 | dnaE2 error-prone DNA polymerase; Validated | 81.45 | |
| COG5235 | 258 | RFA2 Single-stranded DNA-binding replication prote | 81.36 | |
| PRK06920 | 1107 | dnaE DNA polymerase III DnaE; Reviewed | 81.25 | |
| PRK10917 | 681 | ATP-dependent DNA helicase RecG; Provisional | 81.07 |
| >COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-95 Score=777.31 Aligned_cols=381 Identities=34% Similarity=0.575 Sum_probs=344.0
Q ss_pred cccccccccCCCccCCcEEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccc--hhhhhhcCCCccEEEEEEEeEe
Q psy8087 55 CEVGYITCEGPAGYIITNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILC--QTEHALLLSTESSVQFRGRIEK 132 (658)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~--~~~~~~~l~~es~V~v~G~l~~ 132 (658)
+.+.++... ..++.|+|+|||+++|..|+ ++|+.|||++|.||||+.++.. ..+.+..|+.||+|.|+|+|++
T Consensus 5 ~~i~di~~~----~~~~~V~v~GWV~~~R~~g~-i~Fi~lrDgsg~iQ~v~~~~~~~~~~~~~~~L~~es~v~V~G~v~~ 79 (435)
T COG0017 5 TYIKDIKPH----VGGQEVTVRGWVHNKRDLGK-IIFLVLRDGSGFIQAVVPKNKVYEELFKAKKLTLESSVVVTGIVKA 79 (435)
T ss_pred eeHHhhhcc----CCCcEEEEEEEeeeecccCC-eEEEEEEcCCcEEEEEEECCCCcHHHhhhhcCCCccEEEEEEEEEc
Confidence 345566543 23489999999999998886 9999999999999999986422 2334557999999999999998
Q ss_pred CCCCc-----------------------------cceEecCCCceeEEeecCCccc---------CchHHHhhhCCcEEE
Q psy8087 133 VPEEN-----------------------------MKVQLIHPSSYAIVWLGDLKQG---------GYPPEVSLANGIAKV 174 (658)
Q Consensus 133 ~p~~~-----------------------------~d~~l~~p~~R~l~lr~~~~~~---------~~iR~fl~~~gF~EV 174 (658)
+|... +|+++++ |||++|++..++ .++|+||.++||+||
T Consensus 80 ~~~a~~g~El~v~~i~Vl~~a~~~~Pi~~~~~~~~e~lld~---rhL~lR~~~~~Av~kirs~i~~a~~eff~~~gF~eV 156 (435)
T COG0017 80 SPKAPQGFELQVEKIEVLGEADPPYPIDKKEHSELETLLDN---RHLDLRTPKIQAVFKIRSSILRAIREFFYENGFTEV 156 (435)
T ss_pred CCCCCCCEEEEEEEEEEeeccCCCCCcCcccccCHHHHHhc---hheeccccchHHHHhHHHHHHHHHHHHHHhCCcEEe
Confidence 88532 2334444 999999998776 599999999999999
Q ss_pred cCCccccccCCCCccceeeccCCcceeeccCHHHHHHHhcccCCcEEEEeeeeecCCCCCccCcceeeeeeeEeecCCHH
Q psy8087 175 TPPTLVQTQVEGGSTLFSLNFFGEPAYLTQSSQLYLETCLPALGDVYCIAQSYRAENSRTRRHLAEYTHVEAECAFLTFD 254 (658)
Q Consensus 175 ~TPiL~~~~~eG~~~~F~~~~~~~~~~L~~Spqlylk~li~g~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~a~~d~~ 254 (658)
+||+|+++++|||+++|+++||+.++||+||||||||+++.+++|||+|||+||+|+++|+|||.||||+|+||+|++++
T Consensus 157 ~tP~i~~~~~EGg~elF~v~yf~~~a~LtqS~QLyke~~~~al~rVf~igP~FRAE~s~T~RHL~EF~~ld~Emaf~~~~ 236 (435)
T COG0017 157 HTPIITASATEGGGELFKVDYFDKEAYLTQSPQLYKEALAAALERVFTIGPTFRAEKSNTRRHLSEFWMLDPEMAFADLN 236 (435)
T ss_pred cCceEeccCCCCCceeEEEeecCcceEEecCHHHHHHHHHHHhCceEEecCceecCCCCCcchhhhHheecceeccCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccccccC---CCCCCC-CCCcceeeHHHHHHHHHHcCCCCCCCCCcccCCCCCCchhh
Q psy8087 255 DLLDKLEDLICDTVDRVMATHGDLVRQMN---PNFEPP-ARPFLRMNYADAIEYLRKHEIRKPDNTEYEFGEDIPEMPER 330 (658)
Q Consensus 255 ~~m~~~e~li~~i~~~~~~~~~~~~~~~~---~~~~~~-~~pf~rit~~ea~~~l~~~g~~~~~~~~~~~g~~l~~~~e~ 330 (658)
|+|+++|+||+++++.+.+++.+.++.++ .++..+ +.||+||||.||+++|++.|.++ ..||+|+.+.+|+
T Consensus 237 d~m~l~E~~i~~i~~~v~e~~~~el~~l~~~~~~l~~~~~~pf~ritY~eAieiL~~~~~e~-----~~~GdDl~~e~Er 311 (435)
T COG0017 237 DVMDLAEELIKYLFKKVLEECADELEFLGRDNSELKRPESAPFPRITYKEAIEILEEKGFEK-----VEWGDDLGTEHER 311 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHhhccchhhcccccCCccEEEHHHHHHHHHhcCCcc-----cCCCCccCCHHHH
Confidence 99999999999999999998877666553 455544 47899999999999999888664 6899999999999
Q ss_pred hhhcccCC-cEEEEeCCCCCCCCCCccCCCCcCceeEEEEEeCCcceeeeceeccCCHHHHHHHHHHcCCCCCCCcchHH
Q psy8087 331 KMTDQINR-PIMLCRFPADIKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGIDPAPYYWYTD 409 (658)
Q Consensus 331 ~l~~~~~~-p~fi~~~P~~~~pfy~~~~~~~~~~~~~fdL~~~G~~Ei~~G~~r~~d~~~~~~~~~~~g~~~~~~~~yl~ 409 (658)
+|++.... |+||+|||.+++||||++++++|+++.+|||+++|+|||+|||+|+||++.|.+|++++|+|++.|+|||+
T Consensus 312 ~l~e~~~~~~vfv~~yP~~~kpFYm~~~~d~p~~~~~~Dll~p~~gEIigGsqRe~~~d~L~~ri~~~gl~~e~~~wYld 391 (435)
T COG0017 312 YLGEEYFKPPVFVTNYPKEIKPFYMRPDPDNPGTVASFDLLAPGGGEIIGGSQREHDYDLLVERIKEKGLDPESYEWYLD 391 (435)
T ss_pred HHHHHhCCCcEEEEeCcccccccccccCCCCCCeEEEEeeecCCceeeecceeccccHHHHHHHHHHcCCChHHhHHHHH
Confidence 99988766 59999999999999999999999999999999998789999999999999999999999999999999999
Q ss_pred HhhcCCCCccceecchhHHHHHHhcccCcchhhHHHHHh
Q psy8087 410 QRKYGSTPHGGYGLGLERVLCWLLNQYHVRDKYQLIAKA 448 (658)
Q Consensus 410 a~~~G~pP~gG~GiGidRL~m~l~g~~~Irdvi~f~~k~ 448 (658)
+++||+|||||||||+|||+|++||.+|||||++||..+
T Consensus 392 ~~kyG~~PHaGfGlG~ERlv~~i~gl~nIRea~pFPR~~ 430 (435)
T COG0017 392 LRKYGMPPHAGFGLGLERLVMYILGLDNIREAIPFPRDP 430 (435)
T ss_pred HHHcCCCCCcccccCHHHHHHHHhCCCcceeccccCCCC
Confidence 999999999999999999999999999999999998643
|
|
| >COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-93 Score=763.53 Aligned_cols=392 Identities=21% Similarity=0.318 Sum_probs=329.8
Q ss_pred cCCCCC-CCCccccccccccCC-----Cc-cCCcEEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccch--hhh-
Q psy8087 45 LLPFPL-FPSPCEVGYITCEGP-----AG-YIITNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILCQ--TEH- 114 (658)
Q Consensus 45 ~~~~~~-~~~~~~~~~~~~~~~-----~~-~~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~~--~~~- 114 (658)
..|||. |++++++.++.+... +. .....|+|+|||+++|.+|| ++|++|.|++|+||++++++... .+.
T Consensus 29 ~~~yp~~~~~~~~~~~l~~~~~~~~~~el~~~~~~v~vAGRi~~~R~~GK-~~F~~i~d~~gkiQ~yi~k~~~~~~~~~~ 107 (502)
T COG1190 29 IDPYPNDFERTHTSADLREKYADKTKEELEALNIEVSVAGRIMTIRNMGK-ASFADLQDGSGKIQLYVNKDEVGEEVFEA 107 (502)
T ss_pred CCCCCCcCcccccHHHHHHHHhccchhhhhhccceeEEecceeeecccCc-eeEEEEecCCceEEEEEeccccchhhHHH
Confidence 346655 555666666543211 11 11234999999999999995 79999999999999999987532 232
Q ss_pred -hhcCCCccEEEEEEEeEeCCCCcc---------------------------ceEecCCCceeEEeecCCccc-------
Q psy8087 115 -ALLLSTESSVQFRGRIEKVPEENM---------------------------KVQLIHPSSYAIVWLGDLKQG------- 159 (658)
Q Consensus 115 -~~~l~~es~V~v~G~l~~~p~~~~---------------------------d~~l~~p~~R~l~lr~~~~~~------- 159 (658)
...++.||+|.|+|.+-.++.|.+ |++++ .||+||..|..++
T Consensus 108 ~~~~~dlGDiigv~G~~~~T~~GelSv~v~~~~lLsKsL~pLPeK~hgL~D~E~RyR---~RylDLi~N~e~r~~f~~Rs 184 (502)
T COG1190 108 LFKKLDLGDIIGVEGPLFKTKTGELSVSVEELRLLSKSLRPLPEKFHGLTDKEIRYR---QRYLDLIVNPESRQTFIKRS 184 (502)
T ss_pred HHhccccCCEEeeeeeeeecCCCceEEEEEEEeeecccCCCCChhhcCCccHHHHHH---HHHHHHhcCHHHHHHHHHHH
Confidence 346789999999999988887762 33333 3899999886554
Q ss_pred ---CchHHHhhhCCcEEEcCCccccccCCCC-ccce--eeccCCcceeeccCHHHHHHHhcc-cCCcEEEEeeeeecCCC
Q psy8087 160 ---GYPPEVSLANGIAKVTPPTLVQTQVEGG-STLF--SLNFFGEPAYLTQSSQLYLETCLP-ALGDVYCIAQSYRAENS 232 (658)
Q Consensus 160 ---~~iR~fl~~~gF~EV~TPiL~~~~~eG~-~~~F--~~~~~~~~~~L~~Spqlylk~li~-g~~rvfeI~~~FR~E~~ 232 (658)
++||+||+++||+|||||+| +..++|| |.|| |+|.++.++|||||||||||+|++ ||+||||||++||||++
T Consensus 185 ~ii~~iR~fl~~~gFlEVETP~l-q~i~GGA~ArPF~ThhNald~dlyLRIApELyLKRliVGG~erVfEIgr~FRNEGi 263 (502)
T COG1190 185 KIIRAIREFLDDRGFLEVETPML-QPIPGGAAARPFITHHNALDMDLYLRIAPELYLKRLIVGGFERVFEIGRNFRNEGI 263 (502)
T ss_pred HHHHHHHHHHHHCCCeEeccccc-cccCCCcccccceeeecccCCceEEeeccHHHHHHHHhcCchhheeeccccccCCC
Confidence 69999999999999999999 5778777 5799 789999999999999999999998 79999999999999999
Q ss_pred CCccCcceeeeeeeEeecCCHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCCCcceeeHHHHHHHHHHcCCC-
Q psy8087 233 RTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGDLVRQMNPNFEPPARPFLRMNYADAIEYLRKHEIR- 311 (658)
Q Consensus 233 ~~~rHl~EFt~lE~e~a~~d~~~~m~~~e~li~~i~~~~~~~~~~~~~~~~~~~~~~~~pf~rit~~ea~~~l~~~g~~- 311 (658)
++ ||||||||||+|+||+||+|+|+++|+||+++++.+.+.....+....+|| +.||+|++|.||++.+ .|++
T Consensus 264 d~-tHNPEFTmlE~Y~AYaDy~D~m~ltE~Li~~~a~~v~gt~~v~y~~~~id~---~~pf~ri~m~dal~e~--~g~~~ 337 (502)
T COG1190 264 DT-THNPEFTMLEFYQAYADYEDLMDLTEELIKELAKEVNGTTKVTYGGQEIDF---SKPFKRITMVDALKEY--LGVDF 337 (502)
T ss_pred cc-ccCcchhhHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCeEEEECCEeEec---CCCeeeeehHHHHHHH--hCccc
Confidence 87 999999999999999999999999999999999999987655565666665 4799999999999753 4432
Q ss_pred -------------------CCCCCCcccCCCCCCchhhhhhcccCCcEEEEeCCCCCCCCCCccCCCCcCceeEEEEEeC
Q psy8087 312 -------------------KPDNTEYEFGEDIPEMPERKMTDQINRPIMLCRFPADIKSFYMSKCPENPALTESVDVLFP 372 (658)
Q Consensus 312 -------------------~~~~~~~~~g~~l~~~~e~~l~~~~~~p~fi~~~P~~~~pfy~~~~~~~~~~~~~fdL~~~ 372 (658)
......+.+|..++.+||.++++.+.+|+||+|||.++||| ||.|+++|++++|||||++
T Consensus 338 ~~~~~~e~~~~~ak~~~i~~~~~~~~~~g~ll~~lFe~~vE~~liqPTFv~d~P~eiSPL-ak~~~~~p~~teRFElfi~ 416 (502)
T COG1190 338 DDLFDDEEAKELAKKHGIEVEKYGTWGLGHLLNELFEELVEAKLIQPTFVTDHPVEISPL-AKRHRSNPGLTERFELFIG 416 (502)
T ss_pred cccCCHHHHHHHHHHhCCCcCccccccHHHHHHHHHHHHhhhhhcCCceeecCccccCcc-ccCCCCCcchhhhheeeec
Confidence 11100144677888999999999999999999999999999 9999999999999999999
Q ss_pred CcceeeeceeccCCHHHHHHHHHHc------CCCCCC--CcchHHHhhcCCCCccceecchhHHHHHHhcccCcchhhHH
Q psy8087 373 NVGEVIGGSMRIWDPEELLAGYKRE------GIDPAP--YYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRDKYQL 444 (658)
Q Consensus 373 G~~Ei~~G~~r~~d~~~~~~~~~~~------g~~~~~--~~~yl~a~~~G~pP~gG~GiGidRL~m~l~g~~~Irdvi~f 444 (658)
|. ||||||+|+|||.+|++||++| |.|.++ +++|++||+||||||||+|||||||+|+|||+.||||||+|
T Consensus 417 g~-EiaNaysELNDP~dQ~~RF~~Q~~~k~~Gddea~~~Dedfv~ALeyGmPPTgG~GiGIDRLvMllT~~~sIRdVilF 495 (502)
T COG1190 417 GK-EIANAYSELNDPVDQRERFEAQVEEKEAGDDEAMELDEDFVEALEYGMPPTGGLGIGIDRLVMLLTNSPSIRDVILF 495 (502)
T ss_pred cE-EeeeccchhcCHHHHHHHHHHHHHHHHcCCccccccCHHHHHHHhcCCCCCCCccccHHHHHHHHcCCCchhheecc
Confidence 97 9999999999999999999874 555443 68999999999999999999999999999999999999999
Q ss_pred HHHhhhhh
Q psy8087 445 IAKAQLKK 452 (658)
Q Consensus 445 ~~k~~lk~ 452 (658)
|.||+
T Consensus 496 ---P~mr~ 500 (502)
T COG1190 496 ---PAMRP 500 (502)
T ss_pred ---cccCC
Confidence 56664
|
|
| >TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-91 Score=763.29 Aligned_cols=372 Identities=27% Similarity=0.458 Sum_probs=330.3
Q ss_pred cCCcEEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccc--hhh-hhhcCCCccEEEEEEEeEeCCC--CccceEe
Q psy8087 68 YIITNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILC--QTE-HALLLSTESSVQFRGRIEKVPE--ENMKVQL 142 (658)
Q Consensus 68 ~~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~--~~~-~~~~l~~es~V~v~G~l~~~p~--~~~d~~l 142 (658)
..|+.|+|+|||+++|.+|| ++|++|||++|.|||+++++.. ..+ ....|+.||+|.|+|.+..++. +.+++.+
T Consensus 10 ~~g~~v~i~G~v~~~R~~g~-~~Fi~lrd~~g~iQ~v~~~~~~~~~~~~~~~~l~~~s~v~v~G~v~~~~~~~~~~el~~ 88 (428)
T TIGR00458 10 MDGQEVTFMGWVHEIRDLGG-LIFVLLRDREGLIQITAPAKKVSKNLFKWAKKLNLESVVAVRGIVKIKEKAPGGFEIIP 88 (428)
T ss_pred hCCCEEEEEEEEEEEecCCC-cEEEEEEeCCeeEEEEEECCcCCHHHHHHHhCCCCCcEEEEEEEEEecCCCCCcEEEEE
Confidence 56789999999999999997 8999999999999999986542 123 2357999999999999987653 3322221
Q ss_pred cC-----------C---------------CceeEEeecCCccc---------CchHHHhhhCCcEEEcCCccccccCCCC
Q psy8087 143 IH-----------P---------------SSYAIVWLGDLKQG---------GYPPEVSLANGIAKVTPPTLVQTQVEGG 187 (658)
Q Consensus 143 ~~-----------p---------------~~R~l~lr~~~~~~---------~~iR~fl~~~gF~EV~TPiL~~~~~eG~ 187 (658)
++ | ++||||||++..++ +++|+||.++||+||+||+|+++++|||
T Consensus 89 ~~i~vl~~~~~~lP~~~~~~~~~~~~~r~~~R~ldlr~~~~~~~~r~Rs~i~~~iR~ff~~~gf~EV~TP~L~~~~~eg~ 168 (428)
T TIGR00458 89 TKIEVINEAKEPLPLDPTEKVPAELDTRLDYRFLDLRRPTVQAIFRIRSGVLESVREFLAEEGFIEVHTPKLVASATEGG 168 (428)
T ss_pred eEEEEEecCCCCCCCCccccCCCCHHHHhhhhhhhhCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCCceecCCCCCC
Confidence 10 1 24899999765443 6999999999999999999998899999
Q ss_pred ccceeeccCCcceeeccCHHHHHHHhcc-cCCcEEEEeeeeecCCCCCccCcceeeeeeeEeecCCHHHHHHHHHHHHHH
Q psy8087 188 STLFSLNFFGEPAYLTQSSQLYLETCLP-ALGDVYCIAQSYRAENSRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICD 266 (658)
Q Consensus 188 ~~~F~~~~~~~~~~L~~Spqlylk~li~-g~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~a~~d~~~~m~~~e~li~~ 266 (658)
++.|+++|||.++||+||||||||++++ |++||||||||||||+++|+|||||||||||||+|+|++|+|+++|+||++
T Consensus 169 ~~~f~v~~~~~~~yL~~Spql~~q~li~~g~~rVf~i~~~FR~E~~~t~rHl~EFt~lE~e~a~~~~~dlm~~~e~li~~ 248 (428)
T TIGR00458 169 TELFPITYFEREAFLGQSPQLYKQQLMAAGFERVYEIGPIFRAEEHNTHRHLNEATSIDIEMAFEDHHDVMDILEELVVR 248 (428)
T ss_pred cceeeeEecCCcEEECcCHHHHHHHHHhcccCcEEEEecccccCCCCCccchheeeEeeeeeccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999886 799999999999999999889999999999999999999999999999999
Q ss_pred HHHHHhhcccccccccCCCCCCCCCCcceeeHHHHHHHHHHcCCCCCCCCCcccCCCCCCchhhhhhcccCCcEEEEeCC
Q psy8087 267 TVDRVMATHGDLVRQMNPNFEPPARPFLRMNYADAIEYLRKHEIRKPDNTEYEFGEDIPEMPERKMTDQINRPIMLCRFP 346 (658)
Q Consensus 267 i~~~~~~~~~~~~~~~~~~~~~~~~pf~rit~~ea~~~l~~~g~~~~~~~~~~~g~~l~~~~e~~l~~~~~~p~fi~~~P 346 (658)
++..+.+++...+..++.++...+.||+||||.||++++++.|++ ..||+++...+|++|++.++.|+||+|||
T Consensus 249 i~~~~~~~~~~~~~~~~~~~~~~~~pf~rity~eA~~~l~~~g~~------~~~~~~l~~~~E~~l~~~~~~p~fi~d~P 322 (428)
T TIGR00458 249 VFEDVPERCAHQLETLEFKLEKPEGKFVRLTYDEAIEMANAKGVE------IGWGEDLSTEAEKALGEEMDGLYFITDWP 322 (428)
T ss_pred HHHHHHhcchhhhhhcccccccCCCCceEEEHHHHHHHHHHcCCC------CCCccccchHHHHHHHHHhCCCEEEEeCc
Confidence 999999887665555554443235799999999999999888864 35788999999999999899999999999
Q ss_pred CCCCCCCCccCCCCcCceeEEEEEeCCcceeeeceeccCCHHHHHHHHHHcCCCCCCCcchHHHhhcCCCCccceecchh
Q psy8087 347 ADIKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGIDPAPYYWYTDQRKYGSTPHGGYGLGLE 426 (658)
Q Consensus 347 ~~~~pfy~~~~~~~~~~~~~fdL~~~G~~Ei~~G~~r~~d~~~~~~~~~~~g~~~~~~~~yl~a~~~G~pP~gG~GiGid 426 (658)
.+++|||+++++++|++++|||||++|. ||+|||+|+||+++|++++++.|++++.|+|||+|++||||||||||||||
T Consensus 323 ~~~~pfy~~~~~~~p~~~~~fdl~~~g~-Ei~~g~~r~~~~~~l~~~~~~~g~~~~~~~~yl~a~~~G~pP~~G~GiGid 401 (428)
T TIGR00458 323 TEIRPFYTMPDEDNPEISKSFDLMYRDL-EISSGAQRIHLHDLLVERIKAKGLNPEGFKDYLEAFSYGMPPHAGWGLGAE 401 (428)
T ss_pred hhcCcccccccCCCCCEEEEEEEEeCCe-EEeeCchhcCCHHHHHHHHHHcCCChHHHHHHHHHHHCCCCCcCceeecHH
Confidence 9999999999999999999999999995 999999999999999999999999998999999999999999999999999
Q ss_pred HHHHHHhcccCcchhhHHHHH
Q psy8087 427 RVLCWLLNQYHVRDKYQLIAK 447 (658)
Q Consensus 427 RL~m~l~g~~~Irdvi~f~~k 447 (658)
||+|++||.+|||||++||..
T Consensus 402 RL~m~l~g~~~Irdv~~FPr~ 422 (428)
T TIGR00458 402 RFVMFLLGLKNIREAVLFPRD 422 (428)
T ss_pred HHHHHHcCCCchheEEeccCC
Confidence 999999999999999999854
|
In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_arch, represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the Archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). |
| >TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-91 Score=774.45 Aligned_cols=393 Identities=21% Similarity=0.313 Sum_probs=324.3
Q ss_pred CCCCC-CCCccccccccccC------CCccCCcEEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccch-h-hhh-
Q psy8087 46 LPFPL-FPSPCEVGYITCEG------PAGYIITNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILCQ-T-EHA- 115 (658)
Q Consensus 46 ~~~~~-~~~~~~~~~~~~~~------~~~~~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~~-~-~~~- 115 (658)
.|||. |..++++.++.+.. .....++.|+|+|||+++|.+| +++|++|+|++|.||+|++++... . +..
T Consensus 22 ~~yp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Grv~~~R~~g-k~~F~~l~D~~g~iQ~~~~~~~~~~~~~~~~ 100 (496)
T TIGR00499 22 NPYLNKFERTHSSQEFQEEYADLSNEELEDKNIEVSIAGRIMARRSMG-KATFITLQDESGQIQLYVNKDDLPEDFYEFD 100 (496)
T ss_pred CCCCCCCCCCcCHHHHHHHhhccCccchhcCCCEEEEEEEEEEEecCC-CeEEEEEEcCCccEEEEEECCcCcHHHHHHH
Confidence 34544 45555666664321 1123478899999999999766 589999999999999999876432 1 222
Q ss_pred -hcCCCccEEEEEEEeEeCCCCccc---------------------------eEecCCCceeEEeecCCccc--------
Q psy8087 116 -LLLSTESSVQFRGRIEKVPEENMK---------------------------VQLIHPSSYAIVWLGDLKQG-------- 159 (658)
Q Consensus 116 -~~l~~es~V~v~G~l~~~p~~~~d---------------------------~~l~~p~~R~l~lr~~~~~~-------- 159 (658)
..++.||+|.|+|.+..++.+.++ ++++ .||||||++...+
T Consensus 101 ~~~l~~gd~V~v~G~~~~t~~gelel~~~~i~ilsk~~~plP~k~~~~~d~e~r~r---~R~Ldl~~n~~~~~~~r~Rs~ 177 (496)
T TIGR00499 101 EYLLDLGDIIGVTGYPFKTKTGELSVHVTELQILTKALRPLPDKFHGLTDQETRYR---QRYLDLIVNPDSRQTFLVRSK 177 (496)
T ss_pred HhcCCCCCEEEEEEEEEECCCCcEEEEeeEEEEEecCCCCCCccccccCChhhhhh---hhhhhhhcCHHHHHHHHHHHH
Confidence 248999999999999998877533 3333 3999999764322
Q ss_pred --CchHHHhhhCCcEEEcCCccccccCCCC-ccceee--ccCCcceeeccCHHHHHHHhcc-cCCcEEEEeeeeecCCCC
Q psy8087 160 --GYPPEVSLANGIAKVTPPTLVQTQVEGG-STLFSL--NFFGEPAYLTQSSQLYLETCLP-ALGDVYCIAQSYRAENSR 233 (658)
Q Consensus 160 --~~iR~fl~~~gF~EV~TPiL~~~~~eG~-~~~F~~--~~~~~~~~L~~Spqlylk~li~-g~~rvfeI~~~FR~E~~~ 233 (658)
++||+||.++||+||+||+|++ .++|| ++||.+ ++|+.++||+||||||||+|++ |++||||||||||||+++
T Consensus 178 i~~~iR~fl~~~gF~EVeTP~L~~-~~gga~a~pF~t~~~~~~~~~yLriSpELylKrlivgG~~rVfeIg~~FRnE~~~ 256 (496)
T TIGR00499 178 IIKAIRRFLDDRGFIEVETPMLQV-IPGGANARPFITHHNALDMDLYLRIAPELYLKRLIVGGFEKVYEIGRNFRNEGVD 256 (496)
T ss_pred HHHHHHHHHHHCcCEEEeCCeeec-CCCCccceeEEeecccCCCceEEecCHHHHHHHHHhCCCCceEEEecceecCCCC
Confidence 6999999999999999999974 45454 578955 5699999999999999999987 799999999999999998
Q ss_pred CccCcceeeeeeeEeecCCHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCCCcceeeHHHHHHHHH-HcCCCC
Q psy8087 234 TRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGDLVRQMNPNFEPPARPFLRMNYADAIEYLR-KHEIRK 312 (658)
Q Consensus 234 ~~rHl~EFt~lE~e~a~~d~~~~m~~~e~li~~i~~~~~~~~~~~~~~~~~~~~~~~~pf~rit~~ea~~~l~-~~g~~~ 312 (658)
+ |||||||||||||+|+||+|||+++|+||++++..+.+++...+....+++ +.||+|+||.||++++. ..|++.
T Consensus 257 ~-rH~pEFTmlE~y~a~~d~~dlm~~~E~li~~i~~~l~~~~~~~~~~~~~~~---~~pf~rit~~eai~~~~~~~g~~~ 332 (496)
T TIGR00499 257 T-THNPEFTMIEFYQAYADYEDLMDLTENLFKFLAQELLGTTKITYGELEIDF---KKPFKRITMVEAIKKYDMETGIDF 332 (496)
T ss_pred C-cccchhheeehhhhcCCHHHHHHHHHHHHHHHHHHHhcccceecCceeccC---CCCceEEEHHHHHHHHHHhcCCCc
Confidence 6 999999999999999999999999999999999999877654444333343 47999999999999774 356543
Q ss_pred CCC-------------------CCcccCCCCCCchhhhhhcccCCcEEEEeCCCCCCCCCCccCCCCcCceeEEEEEeCC
Q psy8087 313 PDN-------------------TEYEFGEDIPEMPERKMTDQINRPIMLCRFPADIKSFYMSKCPENPALTESVDVLFPN 373 (658)
Q Consensus 313 ~~~-------------------~~~~~g~~l~~~~e~~l~~~~~~p~fi~~~P~~~~pfy~~~~~~~~~~~~~fdL~~~G 373 (658)
.+. ..++||..+..++++++++.+.+|+||+|||.+++|| |+.+++||++++|||||++|
T Consensus 333 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ve~~l~~P~fv~dyP~~~spl-ak~~~~~p~~~~rFeL~i~G 411 (496)
T TIGR00499 333 DDLKDFETAKALAKKIGIEVAEKSLTLGHILNELFEQFLEHTLIQPTFITHYPAEISPL-AKRNPSNPEFTDRFELFIAG 411 (496)
T ss_pred hhcCCHHHHHHHHHHcCCCcCCCCCCHHHHHHHHHHHHHHhccCCCEEEECCchhcCcc-cccCCCCCCeEEEEEEEeCC
Confidence 211 1235567778889999999999999999999999999 89999999999999999999
Q ss_pred cceeeeceeccCCHHHHHHHHHH------cCCCCCCC--cchHHHhhcCCCCccceecchhHHHHHHhcccCcchhhHHH
Q psy8087 374 VGEVIGGSMRIWDPEELLAGYKR------EGIDPAPY--YWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRDKYQLI 445 (658)
Q Consensus 374 ~~Ei~~G~~r~~d~~~~~~~~~~------~g~~~~~~--~~yl~a~~~G~pP~gG~GiGidRL~m~l~g~~~Irdvi~f~ 445 (658)
+ ||||||+|+|||.+|++||++ .|.+++.+ +|||+|++||||||||||||||||+|+|||.+||||||+||
T Consensus 412 ~-Ei~ng~~El~dp~~q~~rf~~q~~~k~~g~~~~~~~de~yl~a~~~G~PP~gG~GiGiDRLvMlltg~~~Irdvi~FP 490 (496)
T TIGR00499 412 K-EIANAFSELNDPLDQRERFEQQVAEKEAGDDEAQFVDEDFVEALEYGMPPTGGLGIGIDRLVMLLTDSKSIRDVILFP 490 (496)
T ss_pred e-EEeccccccCCHHHHHHHHHHHHHHHHcCCCccccchHHHHHHHHcCCCCCceEEEhHHHHHHHHhCCCcHheeccCC
Confidence 7 999999999999999999874 47676664 89999999999999999999999999999999999999995
Q ss_pred HHhhhhh
Q psy8087 446 AKAQLKK 452 (658)
Q Consensus 446 ~k~~lk~ 452 (658)
.+|+
T Consensus 491 ---~~~~ 494 (496)
T TIGR00499 491 ---AMRP 494 (496)
T ss_pred ---CCCC
Confidence 5554
|
This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms. |
| >PRK05159 aspC aspartyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-90 Score=762.71 Aligned_cols=383 Identities=27% Similarity=0.464 Sum_probs=332.5
Q ss_pred ccccccccccCCCccCCcEEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccchh-h-hhhcCCCccEEEEEEEeE
Q psy8087 54 PCEVGYITCEGPAGYIITNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILCQT-E-HALLLSTESSVQFRGRIE 131 (658)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~~~-~-~~~~l~~es~V~v~G~l~ 131 (658)
++.+.++.. ..+|+.|+|+|||+++|.+|| ++|++|||++|.||||++.+.... + ....|+.||+|.|+|.+.
T Consensus 4 ~~~~~~l~~----~~~g~~V~i~GrV~~~R~~gk-~~Fl~LrD~~g~iQ~v~~~~~~~~~~~~~~~L~~gs~V~v~G~v~ 78 (437)
T PRK05159 4 RHLTSELTP----ELDGEEVTLAGWVHEIRDLGG-IAFLILRDRSGIIQVVVKKKVDEELFETIKKLKRESVVSVTGTVK 78 (437)
T ss_pred eeEhhhCCh----hhCCCEEEEEEEeEeeecCCC-eEEEEEEcCCcEEEEEEeCCccHHHHHHHhCCCCCcEEEEEEEEE
Confidence 344556633 357899999999999999985 899999999999999998764322 2 235799999999999999
Q ss_pred eCCC--CccceEecC-----------C---------------CceeEEeecCCccc---------CchHHHhhhCCcEEE
Q psy8087 132 KVPE--ENMKVQLIH-----------P---------------SSYAIVWLGDLKQG---------GYPPEVSLANGIAKV 174 (658)
Q Consensus 132 ~~p~--~~~d~~l~~-----------p---------------~~R~l~lr~~~~~~---------~~iR~fl~~~gF~EV 174 (658)
+++. +.+++.+++ | +.||||||++..++ ++||+||.++||+||
T Consensus 79 ~~~~~~~~~el~~~~i~vls~a~~~~P~~~~~~~~~~~~~~~~~r~Ldlr~~~~~~~l~~Rs~i~~~iR~ff~~~gf~EV 158 (437)
T PRK05159 79 ANPKAPGGVEVIPEEIEVLNKAEEPLPLDISGKVLAELDTRLDNRFLDLRRPRVRAIFKIRSEVLRAFREFLYENGFTEI 158 (437)
T ss_pred cCCCCCCCEEEEEeEEEEEeCCCCCCCCCccccccCCHHHHhhCcceecCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEE
Confidence 8775 332222110 1 24999998765444 699999999999999
Q ss_pred cCCccccccCCCCccceeeccCCcceeeccCHHHHHHHhcc-cCCcEEEEeeeeecCCCCCccCcceeeeeeeEeecCC-
Q psy8087 175 TPPTLVQTQVEGGSTLFSLNFFGEPAYLTQSSQLYLETCLP-ALGDVYCIAQSYRAENSRTRRHLAEYTHVEAECAFLT- 252 (658)
Q Consensus 175 ~TPiL~~~~~eG~~~~F~~~~~~~~~~L~~Spqlylk~li~-g~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~a~~d- 252 (658)
+||+|+.+++|||++.|+++|||.++||+||||||||++++ |++||||||||||||+++++|||||||||||||+|+|
T Consensus 159 ~TP~L~~~~~eg~~~~f~~~~~~~~~~L~~Spql~~q~l~~~g~~rVf~i~~~FR~E~~~t~rHl~EFt~lE~e~a~~~~ 238 (437)
T PRK05159 159 FTPKIVASGTEGGAELFPIDYFEKEAYLAQSPQLYKQMMVGAGFERVFEIGPVFRAEEHNTSRHLNEYTSIDVEMGFIDD 238 (437)
T ss_pred eCCcccccCCCCCcceEeEEecCCceEecCCHHHHHHHHHhcCCCcEEEEeceeeCCCCCCcccchhhheeeeeeeeccc
Confidence 99999888899999999999999999999999999999997 6999999999999999998899999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCCCcceeeHHHHHHHHHHcCCCCCCCCCcccCCCCCCchhhhh
Q psy8087 253 FDDLLDKLEDLICDTVDRVMATHGDLVRQMNPNFEPPARPFLRMNYADAIEYLRKHEIRKPDNTEYEFGEDIPEMPERKM 332 (658)
Q Consensus 253 ~~~~m~~~e~li~~i~~~~~~~~~~~~~~~~~~~~~~~~pf~rit~~ea~~~l~~~g~~~~~~~~~~~g~~l~~~~e~~l 332 (658)
|+++|+++|+||+++++.+.+++...+..++.++...+.||+||||.||++++++.|++ ..||++++..+|+++
T Consensus 239 ~~~lm~~~e~lv~~i~~~~~~~~~~~i~~~~~~~~~~~~~f~rit~~eA~~~l~~~~~~------~~~~~~~~~~~e~~l 312 (437)
T PRK05159 239 HEDVMDLLENLLRYMYEDVAENCEKELELLGIELPVPETPIPRITYDEAIEILKSKGNE------ISWGDDLDTEGERLL 312 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHhhccCCCcCCCCceEeEHHHHHHHHHHcCCC------CCCCCCCCcHHHHHH
Confidence 99999999999999999998876555554554433345799999999999999887753 356788999999988
Q ss_pred hcccC----C-cEEEEeCCCCCCCCCCccCCCCcCceeEEEEEeCCcceeeeceeccCCHHHHHHHHHHcCCCCCCCcch
Q psy8087 333 TDQIN----R-PIMLCRFPADIKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGIDPAPYYWY 407 (658)
Q Consensus 333 ~~~~~----~-p~fi~~~P~~~~pfy~~~~~~~~~~~~~fdL~~~G~~Ei~~G~~r~~d~~~~~~~~~~~g~~~~~~~~y 407 (658)
...+. . |+||+|||.+++||||+.++++|++++|||||++|+ ||+|||+|+|||++|+++|+++|++++.|+||
T Consensus 313 ~~~~~~~~~~~p~fi~~~P~~~~pfy~~~~~~~~~~~~~fdl~~~g~-Ei~~g~~r~~d~~~~~~~~~~~g~~~~~~~~y 391 (437)
T PRK05159 313 GEYVKEEYGSDFYFITDYPSEKRPFYTMPDEDDPEISKSFDLLFRGL-EITSGGQRIHRYDMLVESIKEKGLNPESFEFY 391 (437)
T ss_pred HHHHhhhcCCceEEEecCchhcCcceeeecCCCCCEEEEEEEEECCE-EEeeCeEEcCCHHHHHHHHHHcCCCHHHHHHH
Confidence 76553 2 899999999999999999999999999999999997 99999999999999999999999999899999
Q ss_pred HHHhhcCCCCccceecchhHHHHHHhcccCcchhhHHHHHh
Q psy8087 408 TDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRDKYQLIAKA 448 (658)
Q Consensus 408 l~a~~~G~pP~gG~GiGidRL~m~l~g~~~Irdvi~f~~k~ 448 (658)
|+|++||||||||||||||||+|+++|.+|||||++||..+
T Consensus 392 l~a~~~G~pp~~G~giGidRl~m~~~g~~~Irdv~~FPr~~ 432 (437)
T PRK05159 392 LEAFKYGMPPHGGFGLGLERLTMKLLGLENIREAVLFPRDR 432 (437)
T ss_pred HHHHHCCCCCCCeeeEhHHHHHHHHcCCCchhEEeeccCCC
Confidence 99999999999999999999999999999999999998543
|
|
| >PRK12445 lysyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-89 Score=760.40 Aligned_cols=393 Identities=21% Similarity=0.313 Sum_probs=320.0
Q ss_pred CCCC-CCCccccccccccCC----C--ccCCcEEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccch--hhh--h
Q psy8087 47 PFPL-FPSPCEVGYITCEGP----A--GYIITNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILCQ--TEH--A 115 (658)
Q Consensus 47 ~~~~-~~~~~~~~~~~~~~~----~--~~~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~~--~~~--~ 115 (658)
|||. |..++++.++.+... . ...+++|+|+|||+++|.+|| ++|++|+|++|.||||++++... .+. .
T Consensus 35 py~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Grv~~~R~~Gk-~~F~~lrD~~g~iQ~~~~~~~~~~~~~~~~~ 113 (505)
T PRK12445 35 AFPNDFRRDHTSDQLHEEFDAKDNQELESLNIEVSVAGRMMTRRIMGK-ASFVTLQDVGGRIQLYVARDSLPEGVYNDQF 113 (505)
T ss_pred CCCCCCcCccCHHHHHHHhhccCcchhhcCCCEEEEEEEEEEEecCCC-cEEEEEEeCCccEEEEEECCccchhhHHHHH
Confidence 6765 666777777643221 1 134678999999999999986 79999999999999999865432 232 3
Q ss_pred hcCCCccEEEEEEEeEeCCCCccceEecC-----------C-------------CceeEEeecCCccc----------Cc
Q psy8087 116 LLLSTESSVQFRGRIEKVPEENMKVQLIH-----------P-------------SSYAIVWLGDLKQG----------GY 161 (658)
Q Consensus 116 ~~l~~es~V~v~G~l~~~p~~~~d~~l~~-----------p-------------~~R~l~lr~~~~~~----------~~ 161 (658)
..++.||+|.|+|.+.+++.+.+++.++. | .+||||||++...+ ++
T Consensus 114 ~~l~~Gd~V~v~G~~~~t~~gelel~~~~~~llsk~~~plP~~~~~~~d~e~r~r~Ryldl~~n~~~r~~~r~Rs~i~~~ 193 (505)
T PRK12445 114 KKWDLGDIIGARGTLFKTQTGELSIHCTELRLLTKALRPLPDKFHGLQDQEVRYRQRYLDLIANDKSRQTFVVRSKILAA 193 (505)
T ss_pred hcCCCCCEEEEEEEEEecCCCcEEEEEeEEEEEecCCCCCCcccccccChhhhhhhhhhhhhcCHHHHHHHHHHHHHHHH
Confidence 46999999999999998887763333221 1 13999999765433 69
Q ss_pred hHHHhhhCCcEEEcCCccccccCCCC-ccce--eeccCCcceeeccCHHHHHHHhcc-cCCcEEEEeeeeecCCCCCccC
Q psy8087 162 PPEVSLANGIAKVTPPTLVQTQVEGG-STLF--SLNFFGEPAYLTQSSQLYLETCLP-ALGDVYCIAQSYRAENSRTRRH 237 (658)
Q Consensus 162 iR~fl~~~gF~EV~TPiL~~~~~eG~-~~~F--~~~~~~~~~~L~~Spqlylk~li~-g~~rvfeI~~~FR~E~~~~~rH 237 (658)
||+||.++||+||+||+|+ +.++|| +.|| ++++|+.++||+||||||||+|++ |++||||||||||||++ +.||
T Consensus 194 iR~f~~~~gFiEVeTPiL~-~~~gGa~a~pF~t~~~~~~~~~yL~~SpELylKrlivgG~~rVfeIg~~FRnE~~-~~rH 271 (505)
T PRK12445 194 IRQFMVARGFMEVETPMMQ-VIPGGASARPFITHHNALDLDMYLRIAPELYLKRLVVGGFERVFEINRNFRNEGI-SVRH 271 (505)
T ss_pred HHHHHHHCCCEEeeCCeeE-ecCCCCcccceecccccCCcceeeecCHHHHHHHHHhccCCcEEEEehhccCCCC-CCCc
Confidence 9999999999999999996 456555 3588 368999999999999999999887 79999999999999999 6799
Q ss_pred cceeeeeeeEeecCCHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCCCcceeeHHHHHHHHHH----------
Q psy8087 238 LAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGDLVRQMNPNFEPPARPFLRMNYADAIEYLRK---------- 307 (658)
Q Consensus 238 l~EFt~lE~e~a~~d~~~~m~~~e~li~~i~~~~~~~~~~~~~~~~~~~~~~~~pf~rit~~ea~~~l~~---------- 307 (658)
|||||||||||+|+||+|||+++|+||++++..+.+.+...+....++ ++.||+|+||.||++.+..
T Consensus 272 ~pEFTmlE~y~a~~d~~d~m~l~E~li~~l~~~~~~~~~~~~~~~~i~---~~~pf~rit~~eai~~~~~~~~~~~~~~~ 348 (505)
T PRK12445 272 NPEFTMMELYMAYADYHDLIELTESLFRTLAQEVLGTTKVTYGEHVFD---FGKPFEKLTMREAIKKYRPETDMADLDNF 348 (505)
T ss_pred CcccceeeeeeecCCHHHHHHHHHHHHHHHHHHHhcccceecCceecc---CCCCceEEEHHHHHHHHhCCCCccccCCH
Confidence 999999999999999999999999999999999887654333222223 3479999999999998732
Q ss_pred ---------cCCCCCCCCCcccCCCCCCchhhhhhcccCCcEEEEeCCCCCCCCCCccCCCCcCceeEEEEEeCCcceee
Q psy8087 308 ---------HEIRKPDNTEYEFGEDIPEMPERKMTDQINRPIMLCRFPADIKSFYMSKCPENPALTESVDVLFPNVGEVI 378 (658)
Q Consensus 308 ---------~g~~~~~~~~~~~g~~l~~~~e~~l~~~~~~p~fi~~~P~~~~pfy~~~~~~~~~~~~~fdL~~~G~~Ei~ 378 (658)
.|++.+ ..+.+|..++..++.++++.+.+|+||+|||.+++||| +.+++||++++|||||++|+ |||
T Consensus 349 ~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~vE~~l~~P~Fv~dyP~~~spla-k~~~~~p~~~~rFeL~i~G~-Ei~ 424 (505)
T PRK12445 349 DAAKALAESIGITVE--KSWGLGRIVTEIFDEVAEAHLIQPTFITEYPAEVSPLA-RRNDVNPEITDRFEFFIGGR-EIG 424 (505)
T ss_pred HHHHHHHHHcCCCCC--CCCCHHHHHHHHHHHHHHhhcCCCEEEECCCchhCccc-ccCCCCCCceEEEEEEeCCE-EEc
Confidence 111111 12344455667778888888999999999999999996 77889999999999999997 999
Q ss_pred eceeccCCHHHHHHHHHHc------CCCCCC--CcchHHHhhcCCCCccceecchhHHHHHHhcccCcchhhHHHHHhhh
Q psy8087 379 GGSMRIWDPEELLAGYKRE------GIDPAP--YYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRDKYQLIAKAQL 450 (658)
Q Consensus 379 ~G~~r~~d~~~~~~~~~~~------g~~~~~--~~~yl~a~~~G~pP~gG~GiGidRL~m~l~g~~~Irdvi~f~~k~~l 450 (658)
|||+|+|||++|++||+++ |.+++. ++|||+|++||||||||||||||||+|+|||..||||||+|| .+
T Consensus 425 ng~~El~dp~eq~~rf~~q~~~~~~g~~e~~~~de~yl~al~yG~PP~gG~GiGiDRLvMlltg~~sIrdvi~FP---~~ 501 (505)
T PRK12445 425 NGFSELNDAEDQAERFQEQVNAKAAGDDEAMFYDEDYVTALEYGLPPTAGLGIGIDRMIMLFTNSHTIRDVILFP---AM 501 (505)
T ss_pred ccccccCCHHHHHHHHHHHHHHHhcCCCccccchHHHHHHHHcCCCCCCeEEEhHHHHHHHHcCCCchheEecCC---CC
Confidence 9999999999999999864 666554 379999999999999999999999999999999999999995 55
Q ss_pred hh
Q psy8087 451 KK 452 (658)
Q Consensus 451 k~ 452 (658)
|+
T Consensus 502 ~~ 503 (505)
T PRK12445 502 RP 503 (505)
T ss_pred CC
Confidence 54
|
|
| >PLN02502 lysyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-89 Score=762.84 Aligned_cols=395 Identities=20% Similarity=0.303 Sum_probs=328.4
Q ss_pred cCCCCC-CCCccccccccccC-----CCccCCcEEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccch----hhh
Q psy8087 45 LLPFPL-FPSPCEVGYITCEG-----PAGYIITNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILCQ----TEH 114 (658)
Q Consensus 45 ~~~~~~-~~~~~~~~~~~~~~-----~~~~~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~~----~~~ 114 (658)
..|||. |..++++.++.... +....+++|+|+|||+++|.+| +++|++|+|++|.||||++.+... .|.
T Consensus 77 ~~pyp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~GrV~~~R~~G-k~~F~~LrD~~g~iQv~~~~~~~~~~~~~~~ 155 (553)
T PLN02502 77 VEPYPYKFDVTHTAPELQEKYGSLENGEELEDVSVSVAGRIMAKRAFG-KLAFYDLRDDGGKIQLYADKKRLDLDEEEFE 155 (553)
T ss_pred CCCCCCCCCCCccHHHHHHHhhccccccccCCCEEEEEEEEEEEecCC-CeEEEEEecCCccEEEEEECccccchhHHHH
Confidence 368987 78888888885432 2334678899999999999999 589999999999999999866431 243
Q ss_pred h--hcCCCccEEEEEEEeEeCCCCccceEecC-----------C-------------CceeEEeecCCccc---------
Q psy8087 115 A--LLLSTESSVQFRGRIEKVPEENMKVQLIH-----------P-------------SSYAIVWLGDLKQG--------- 159 (658)
Q Consensus 115 ~--~~l~~es~V~v~G~l~~~p~~~~d~~l~~-----------p-------------~~R~l~lr~~~~~~--------- 159 (658)
. ..|+.||+|.|+|.+.+++.+.+++.++. | ..|||||+.+...+
T Consensus 156 ~~~~~l~~gdiV~V~G~~~~t~~gelel~~~~i~vLs~~l~plP~k~~~~~d~e~r~r~RyLdl~~n~~~~~i~r~Rs~i 235 (553)
T PLN02502 156 KLHSLVDRGDIVGVTGTPGKTKKGELSIFPTSFEVLTKCLLMLPDKYHGLTDQETRYRQRYLDLIANPEVRDIFRTRAKI 235 (553)
T ss_pred HHHhCCCCCcEEEEEEEEEecCCCCEEEEEeEEEEEeccCCCCCcccccccchhhhccchhhhhhcCHHHHHHHHHHHHH
Confidence 2 25999999999999999887764333221 1 14999997654333
Q ss_pred -CchHHHhhhCCcEEEcCCccccccCCCC-cccee--eccCCcceeeccCHHHHHHHhcc-cCCcEEEEeeeeecCCCCC
Q psy8087 160 -GYPPEVSLANGIAKVTPPTLVQTQVEGG-STLFS--LNFFGEPAYLTQSSQLYLETCLP-ALGDVYCIAQSYRAENSRT 234 (658)
Q Consensus 160 -~~iR~fl~~~gF~EV~TPiL~~~~~eG~-~~~F~--~~~~~~~~~L~~Spqlylk~li~-g~~rvfeI~~~FR~E~~~~ 234 (658)
++||+||.++||+||+||+|++ .++|| +.||. +++|++++||+||||||||+|++ |++||||||||||||++++
T Consensus 236 ~~~iR~fl~~~gF~EVeTPiL~~-~~gGA~a~pF~t~~n~~~~~~yL~~Spel~lK~L~v~g~~rVfeIg~~FRnE~~~~ 314 (553)
T PLN02502 236 ISYIRRFLDDRGFLEVETPMLNM-IAGGAAARPFVTHHNDLNMDLYLRIATELHLKRLVVGGFERVYEIGRQFRNEGIST 314 (553)
T ss_pred HHHHHHHHHHCCCEEEECCeeec-cCCCccccceeeecccCCcceeeecCHHHHHHHHHHhccCCEEEEcCeeeCCCCCC
Confidence 6999999999999999999975 45555 46894 48999999999999999999887 8999999999999999987
Q ss_pred ccCcceeeeeeeEeecCCHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCCCcceeeHHHHHHHHHHcCCCCCC
Q psy8087 235 RRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGDLVRQMNPNFEPPARPFLRMNYADAIEYLRKHEIRKPD 314 (658)
Q Consensus 235 ~rHl~EFt~lE~e~a~~d~~~~m~~~e~li~~i~~~~~~~~~~~~~~~~~~~~~~~~pf~rit~~ea~~~l~~~g~~~~~ 314 (658)
|||||||||||||+|+||+|||+++|+||++++..+.+++...+....+++ ..||+|+||.||++.+ .|++.+.
T Consensus 315 -rH~pEFtmlE~y~a~~d~~dlm~~~E~li~~i~~~v~~~~~~~~~~~~i~~---~~p~~rit~~e~l~~~--~g~~~~~ 388 (553)
T PLN02502 315 -RHNPEFTTCEFYQAYADYNDMMELTEEMVSGMVKELTGSYKIKYHGIEIDF---TPPFRRISMISLVEEA--TGIDFPA 388 (553)
T ss_pred -ccccceeehhhhhhcCCHHHHHHHHHHHHHHHHHHHhcccccccCCccccC---CCCceeccHHHHHHHH--hCCCCCc
Confidence 999999999999999999999999999999999999887654443333343 4799999999999864 3443221
Q ss_pred -C---------------------CCcccCCCCCCchhhhhhcccCCcEEEEeCCCCCCCCCCccCCCCcCceeEEEEEeC
Q psy8087 315 -N---------------------TEYEFGEDIPEMPERKMTDQINRPIMLCRFPADIKSFYMSKCPENPALTESVDVLFP 372 (658)
Q Consensus 315 -~---------------------~~~~~g~~l~~~~e~~l~~~~~~p~fi~~~P~~~~pfy~~~~~~~~~~~~~fdL~~~ 372 (658)
. ...+||..++.++++++++++.+|+||+|||.+++|| ++.+++||++++|||||++
T Consensus 389 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~ve~~l~~PtFV~dyP~~~spl-ak~~~~~p~~~erFELfi~ 467 (553)
T PLN02502 389 DLKSDEANAYLIAACEKFDVKCPPPQTTGRLLNELFEEFLEETLVQPTFVLDHPVEMSPL-AKPHRSKPGLTERFELFIN 467 (553)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCCCCCHhHHHHHHHHHHHHhhcCCCEEEECCccccCcc-cccCCCCCCeEEEEEEEeC
Confidence 0 1246777888899999999999999999999999999 6789999999999999999
Q ss_pred CcceeeeceeccCCHHHHHHHHHHc------CCCCCC--CcchHHHhhcCCCCccceecchhHHHHHHhcccCcchhhHH
Q psy8087 373 NVGEVIGGSMRIWDPEELLAGYKRE------GIDPAP--YYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRDKYQL 444 (658)
Q Consensus 373 G~~Ei~~G~~r~~d~~~~~~~~~~~------g~~~~~--~~~yl~a~~~G~pP~gG~GiGidRL~m~l~g~~~Irdvi~f 444 (658)
|+ ||||||+|+|||.+|++||+++ +.+.+. +++||+|++||||||||||||||||+|+|||..||||||+|
T Consensus 468 G~-Eiangy~ELnDp~~Qr~rf~~q~~~~~~~~~~~~~~De~fl~aleyGmPP~gG~GiGiDRLvMlltg~~sIrdVi~F 546 (553)
T PLN02502 468 GR-ELANAFSELTDPVDQRERFEEQVKQHNAGDDEAMALDEDFCTALEYGLPPTGGWGLGIDRLVMLLTDSASIRDVIAF 546 (553)
T ss_pred Ce-EEccchhhccCHHHHHHHHHHHHHHhhcCCccccccHHHHHHHHHcCCCCCceEEehHHHHHHHHcCCcchheeecC
Confidence 97 9999999999999999999875 222211 47799999999999999999999999999999999999999
Q ss_pred HHHhhhhh
Q psy8087 445 IAKAQLKK 452 (658)
Q Consensus 445 ~~k~~lk~ 452 (658)
|.||+
T Consensus 547 ---P~~k~ 551 (553)
T PLN02502 547 ---PAMKP 551 (553)
T ss_pred ---CcCCC
Confidence 56664
|
|
| >TIGR00457 asnS asparaginyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-89 Score=751.45 Aligned_cols=378 Identities=33% Similarity=0.534 Sum_probs=325.9
Q ss_pred ccCCcEEEEeEEeecceecCCCeEEEEEEcCC--eEEEEEEecccchh-h-hhhcCCCccEEEEEEEeEeCCCCc--cce
Q psy8087 67 GYIITNINIPAIPGPPAIPGKGLMFVTLRDGS--GFIQCVLADILCQT-E-HALLLSTESSVQFRGRIEKVPEEN--MKV 140 (658)
Q Consensus 67 ~~~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~--~~iQvv~~~~~~~~-~-~~~~l~~es~V~v~G~l~~~p~~~--~d~ 140 (658)
...|++|+|+|||+++|.+| +++|++|||++ |.||||++++.... + ....|+.||+|.|+|.+.++|.+. +|+
T Consensus 13 ~~~g~~v~v~Gwv~~~R~~~-~~~F~~lrD~~~~g~iQ~v~~~~~~~~~~~~~~~l~~gs~V~v~G~v~~~~~~~~~~El 91 (453)
T TIGR00457 13 KFVGDEVTVSGWVRTKRSSK-KIIFLELNDGSSLGPIQAVINGEDNPYLFQLLKSLTTGSSVSVTGKVVESPGKGQPVEL 91 (453)
T ss_pred hcCCCEEEEEEEeEEEEcCC-CeEEEEEECCCCCccEEEEEeCCcChHHHHHHHcCCCCcEEEEEEEEEcCCCCCCCEEE
Confidence 35689999999999999555 69999999999 99999998763221 2 235799999999999998765322 222
Q ss_pred EecC------------C------------CceeEEeecCCccc---------CchHHHhhhCCcEEEcCCccccccCCCC
Q psy8087 141 QLIH------------P------------SSYAIVWLGDLKQG---------GYPPEVSLANGIAKVTPPTLVQTQVEGG 187 (658)
Q Consensus 141 ~l~~------------p------------~~R~l~lr~~~~~~---------~~iR~fl~~~gF~EV~TPiL~~~~~eG~ 187 (658)
.+++ | +.||||+|++..++ +++|+||.++||+||+||+|+++++||+
T Consensus 92 ~~~~i~vl~~~~~~~~P~~~~~~~~~~~~~~r~l~lR~~~~~~~lr~Rs~i~~~~r~~~~~~gf~eV~TP~l~~~~~eg~ 171 (453)
T TIGR00457 92 QVKKIEVVGEAEPDDYPLQKKEHSLEFLRDIAHLRLRTNTLGAVMRVRNALSQAIHRYFQENGFTWVSPPILTSNDCEGA 171 (453)
T ss_pred EEeEEEEEecCCccCCCCCccccChhhHhhCcceecCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEecCCeEeecCCCCC
Confidence 1110 0 25999999876544 6999999999999999999998899999
Q ss_pred ccceeec---------cCCcceeeccCHHHHHHHhcccCCcEEEEeeeeecCCCCCccCcceeeeeeeEeecCCHHHHHH
Q psy8087 188 STLFSLN---------FFGEPAYLTQSSQLYLETCLPALGDVYCIAQSYRAENSRTRRHLAEYTHVEAECAFLTFDDLLD 258 (658)
Q Consensus 188 ~~~F~~~---------~~~~~~~L~~Spqlylk~li~g~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~a~~d~~~~m~ 258 (658)
+++|.+. |||.++||+||||||||++++|++||||||||||||+++++|||||||||||||+|+|++|+|+
T Consensus 172 ~~~F~v~~~~~~~~~~~~~~~~yL~~Spql~lq~l~~g~~rVf~i~~~FR~E~~~t~rHl~EFt~le~e~~~~~~~dvm~ 251 (453)
T TIGR00457 172 GELFRVSTDGIDFSQDFFGKEAYLTVSGQLYLETYALALSKVYTFGPTFRAEKSNTSRHLSEFWMIEPEMAFANLNDLLQ 251 (453)
T ss_pred CCceEecccccccchhccCCccccccCHHHHHHHHhhcccCceEeeeccccCCCCCCcCcchhccceeeeecCCHHHHHH
Confidence 9999776 8999999999999999988779999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcccccccccCCCCC---------CCCCCcceeeHHHHHHHHHHcCCCCCCCCCcccCCCCCCchh
Q psy8087 259 KLEDLICDTVDRVMATHGDLVRQMNPNFE---------PPARPFLRMNYADAIEYLRKHEIRKPDNTEYEFGEDIPEMPE 329 (658)
Q Consensus 259 ~~e~li~~i~~~~~~~~~~~~~~~~~~~~---------~~~~pf~rit~~ea~~~l~~~g~~~~~~~~~~~g~~l~~~~e 329 (658)
++|+||++++..+.+.+...+..++.++. ....||+||||.||+++|++.+..... ...||.+|...+|
T Consensus 252 ~~E~lv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~rit~~ea~~~l~~~~~~~~~--~~~~g~~l~~~~e 329 (453)
T TIGR00457 252 LAETLIKYIIKAVLENCSQELKFLEKNFDKDLIKRLENIINNKFARITYTDAIEILKESDKNFEY--EDFWGDDLQTEHE 329 (453)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHhhccCCchHHHHHHHhcCCCCceeEHHHHHHHHHhcCCCCcC--CCCCCCCCCcHHH
Confidence 99999999999998776544333332221 123589999999999999887643221 2468999999999
Q ss_pred hhhhccc-CCcEEEEeCCCCCCCCCCccCCCCcCceeEEEEEeCCcceeeeceeccCCHHHHHHHHHHcCCCCCCCcchH
Q psy8087 330 RKMTDQI-NRPIMLCRFPADIKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGIDPAPYYWYT 408 (658)
Q Consensus 330 ~~l~~~~-~~p~fi~~~P~~~~pfy~~~~~~~~~~~~~fdL~~~G~~Ei~~G~~r~~d~~~~~~~~~~~g~~~~~~~~yl 408 (658)
++|.+.+ ..|+||||||.+++|||++.+ +|+++++||||+++|+|||+|||+|+|+++.+.+++++.|+|++.|+|||
T Consensus 330 ~~L~~~~~~~p~fIt~~P~~~~pfy~~~~-~~~~~~~~fDL~~~g~gEi~~gsere~~~~~l~~~~~~~g~d~~~~~~Yl 408 (453)
T TIGR00457 330 RFLAEEYFKPPVFVTNYPKDIKAFYMKLN-DDGKTVAAMDLLAPGIGEIIGGSEREDDLDKLENRMKEMGLDTDALNWYL 408 (453)
T ss_pred HHHHHHhCCCCEEEECCCcccChhhcccC-CCcCceeeeeeccCCceEEeehhccCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 9988774 779999999999999998887 89999999999999988999999999999999999999999999999999
Q ss_pred HHhhcCCCCccceecchhHHHHHHhcccCcchhhHHHHHh
Q psy8087 409 DQRKYGSTPHGGYGLGLERVLCWLLNQYHVRDKYQLIAKA 448 (658)
Q Consensus 409 ~a~~~G~pP~gG~GiGidRL~m~l~g~~~Irdvi~f~~k~ 448 (658)
++++||||||||||||||||+|+|||.+|||||++||..+
T Consensus 409 ~~~~~G~pPhgG~GiGieRlvm~l~g~~~Irdv~~FPr~~ 448 (453)
T TIGR00457 409 DLRKYGSVPHSGFGLGFERLLAYITGLENIRDAIPFPRTP 448 (453)
T ss_pred HHHHcCCCCCCcEeehHHHHHHHHhCCCcHhhhccCcCCC
Confidence 9999999999999999999999999999999999998543
|
In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn. |
| >PRK00484 lysS lysyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-88 Score=755.33 Aligned_cols=390 Identities=22% Similarity=0.330 Sum_probs=317.7
Q ss_pred CCCCC-CCCccccccccccCCC------ccCCcEEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccch--hhh-h
Q psy8087 46 LPFPL-FPSPCEVGYITCEGPA------GYIITNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILCQ--TEH-A 115 (658)
Q Consensus 46 ~~~~~-~~~~~~~~~~~~~~~~------~~~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~~--~~~-~ 115 (658)
.|||. |..+++++++...... ...++.|+|+|||+++|.+| +++|++|||++|.||||++++... .+. .
T Consensus 23 ~~yp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~G~v~~~R~~g-~~~Fi~lrD~~g~iQ~v~~~~~~~~~~~~~~ 101 (491)
T PRK00484 23 DPYPNKFERTHTAAELRAKYDDKEKEELEELEIEVSVAGRVMLKRVMG-KASFATLQDGSGRIQLYVSKDDVGEEALEAF 101 (491)
T ss_pred CCCCCCCcCccCHHHHHHHhccccchhhcccCcEEEEEEEEEEEecCC-ceEEEEEEcCCccEEEEEECCcCCHHHHHHH
Confidence 45554 5566677777543111 11236799999999999999 599999999999999999876432 232 2
Q ss_pred hcCCCccEEEEEEEeEeCCCCccceEecC-----------C-------------CceeEEeecCCccc----------Cc
Q psy8087 116 LLLSTESSVQFRGRIEKVPEENMKVQLIH-----------P-------------SSYAIVWLGDLKQG----------GY 161 (658)
Q Consensus 116 ~~l~~es~V~v~G~l~~~p~~~~d~~l~~-----------p-------------~~R~l~lr~~~~~~----------~~ 161 (658)
..|+.||+|.|+|.+.+++.+.+++.+++ | +.||||||++...+ ++
T Consensus 102 ~~l~~g~~v~v~G~v~~t~~ge~el~~~~~~vls~~~~plP~~~~~~~~~~~r~r~R~lDl~~~~~~~~~~r~Rs~i~~~ 181 (491)
T PRK00484 102 KKLDLGDIIGVEGTLFKTKTGELSVKATELTLLTKSLRPLPDKFHGLTDVETRYRQRYVDLIVNPESRETFRKRSKIISA 181 (491)
T ss_pred hcCCCCCEEEEEEEEEEcCCCcEEEEEeEEEEEeccCCCCCcccccccchhhhccceeeehhcCHHHHHHHHHHHHHHHH
Confidence 46999999999999999887763332211 0 24999998654322 69
Q ss_pred hHHHhhhCCcEEEcCCccccccCCCC-ccce--eeccCCcceeeccCHHHHHHHhcc-cCCcEEEEeeeeecCCCCCccC
Q psy8087 162 PPEVSLANGIAKVTPPTLVQTQVEGG-STLF--SLNFFGEPAYLTQSSQLYLETCLP-ALGDVYCIAQSYRAENSRTRRH 237 (658)
Q Consensus 162 iR~fl~~~gF~EV~TPiL~~~~~eG~-~~~F--~~~~~~~~~~L~~Spqlylk~li~-g~~rvfeI~~~FR~E~~~~~rH 237 (658)
||+||.++||+||+||+|+ +.++|| +++| +++||+.++||+||||||||+|++ |++||||||||||||++++ ||
T Consensus 182 iR~f~~~~gF~EVeTPiL~-~~~~Ga~a~pF~t~~~~~~~~~yL~~Spql~lk~l~v~g~~rVfei~~~FR~E~~~~-rH 259 (491)
T PRK00484 182 IRRFLDNRGFLEVETPMLQ-PIAGGAAARPFITHHNALDIDLYLRIAPELYLKRLIVGGFERVYEIGRNFRNEGIDT-RH 259 (491)
T ss_pred HHHHHHHCCCEEEECCcee-ccCCCccceeeeeccccCCCceEeccCHHHHHHHHHhccCCcEEEEecceecCCCCC-Cc
Confidence 9999999999999999997 446555 4789 468999999999999999999987 8999999999999999986 99
Q ss_pred cceeeeeeeEeecCCHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCCCcceeeHHHHHHHHHHcCCCCCC---
Q psy8087 238 LAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGDLVRQMNPNFEPPARPFLRMNYADAIEYLRKHEIRKPD--- 314 (658)
Q Consensus 238 l~EFt~lE~e~a~~d~~~~m~~~e~li~~i~~~~~~~~~~~~~~~~~~~~~~~~pf~rit~~ea~~~l~~~g~~~~~--- 314 (658)
|||||||||||+|+||+|||+++|+||++++..+.++....+....++ ++.||+||||.||++.+ .|++..+
T Consensus 260 ~pEFt~lE~e~a~~d~~d~m~~~E~li~~i~~~~~~~~~i~~~~~~~~---~~~pf~rity~eai~~~--~g~~~~~~~~ 334 (491)
T PRK00484 260 NPEFTMLEFYQAYADYNDMMDLTEELIRHLAQAVLGTTKVTYQGTEID---FGPPFKRLTMVDAIKEY--TGVDFDDMTD 334 (491)
T ss_pred CCceEEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCceEecCCEeec---CCCCceEEEHHHHHHHH--hCCCcccCCH
Confidence 999999999999999999999999999999999986543222221223 35799999999999976 3433210
Q ss_pred --------------CCCcccCCCCCCchhhhhhcccCCcEEEEeCCCCCCCCCCccCCCCcCceeEEEEEeCCcceeeec
Q psy8087 315 --------------NTEYEFGEDIPEMPERKMTDQINRPIMLCRFPADIKSFYMSKCPENPALTESVDVLFPNVGEVIGG 380 (658)
Q Consensus 315 --------------~~~~~~g~~l~~~~e~~l~~~~~~p~fi~~~P~~~~pfy~~~~~~~~~~~~~fdL~~~G~~Ei~~G 380 (658)
...+++|..++.+++.++++.+.+|+||+|||.+++|| ++.+++||++++|||||++|+ |||||
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ve~~~~~P~Fi~dyP~~~~pf-~k~~~~~~~~~~rFdL~i~G~-Ei~ng 412 (491)
T PRK00484 335 EEARALAKELGIEVEKSWGLGKLINELFEEFVEPKLIQPTFITDYPVEISPL-AKRHREDPGLTERFELFIGGR-EIANA 412 (491)
T ss_pred HHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhhhhcCCcEEEECCChHHhhh-hccCCCCCCeEEEEEEEECCE-EEecc
Confidence 01234666777888899999999999999999999999 578889999999999999998 99999
Q ss_pred eeccCCHHHHHHHHHHc------CCCCCC--CcchHHHhhcCCCCccceecchhHHHHHHhcccCcchhhHHH
Q psy8087 381 SMRIWDPEELLAGYKRE------GIDPAP--YYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRDKYQLI 445 (658)
Q Consensus 381 ~~r~~d~~~~~~~~~~~------g~~~~~--~~~yl~a~~~G~pP~gG~GiGidRL~m~l~g~~~Irdvi~f~ 445 (658)
|+|+|||.+|++||+++ |.++.. ++|||+|++||||||||||||||||+|++||.+||||||+||
T Consensus 413 y~El~dp~~q~~r~~~q~~~~~~~~~e~~~~d~~yl~a~~~G~PP~gG~GiGiDRLvm~ltg~~~Irdvi~FP 485 (491)
T PRK00484 413 FSELNDPIDQRERFEAQVEAKEAGDDEAMFMDEDFLRALEYGMPPTGGLGIGIDRLVMLLTDSPSIRDVILFP 485 (491)
T ss_pred hhhhCCHHHHHHHHHHHHHHHHcCCCcccccHHHHHHHHHCCCCCCCeEEEeHHHHHHHHhCCCcHHhcccCC
Confidence 99999999999999864 433332 369999999999999999999999999999999999999995
|
|
| >PTZ00425 asparagine-tRNA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-88 Score=752.03 Aligned_cols=378 Identities=28% Similarity=0.476 Sum_probs=327.8
Q ss_pred ccCCcEEEEeEEeecceecCC-CeEEEEEEcCCe--EEEEEEecccchhh-hhhcCCCccEEEEEEEeEeCCCC------
Q psy8087 67 GYIITNINIPAIPGPPAIPGK-GLMFVTLRDGSG--FIQCVLADILCQTE-HALLLSTESSVQFRGRIEKVPEE------ 136 (658)
Q Consensus 67 ~~~~~~v~~~Grv~~~r~~gk-~l~Fi~LrD~~~--~iQvv~~~~~~~~~-~~~~l~~es~V~v~G~l~~~p~~------ 136 (658)
...|+.|+|+|||+++|.+|+ +++|++|+|++| .+|||+++.. ..+ ...+++.|++|.|+|.|...|.+
T Consensus 78 ~~~g~~Vtl~GWv~~iR~~g~~~~~Fv~lrDgsg~~~iQiVv~~~~-~~~~~l~~l~~gs~v~v~G~v~~~~~~~~n~~g 156 (586)
T PTZ00425 78 KYIDQIITVCGWSKAVRKQGGGRFCFVNLNDGSCHLNLQIIVDQSI-ENYEKLLKCGVGCCFRFTGKLIISPVQNENKKG 156 (586)
T ss_pred ccCCCEEEEEEEEeehhhcCCceEEEEEEECCCCCcceEEEECCch-HHHHHHhcCCCccEEEEEEEEEcCCccccCcCC
Confidence 357899999999999999886 599999999998 4999997542 222 23579999999999999876533
Q ss_pred ----ccceEec--------------C----C------------CceeEEeecCCccc---------CchHHHhhhCCcEE
Q psy8087 137 ----NMKVQLI--------------H----P------------SSYAIVWLGDLKQG---------GYPPEVSLANGIAK 173 (658)
Q Consensus 137 ----~~d~~l~--------------~----p------------~~R~l~lr~~~~~~---------~~iR~fl~~~gF~E 173 (658)
.+|+.+. + | +.|||++|++..++ .++|+||.++||+|
T Consensus 157 ~~~~~~El~~~~~~~~~~~ilg~~~d~~~yPi~~k~~~~e~lr~~rhL~lR~~~~~avlRiRs~l~~a~r~ff~~~gF~e 236 (586)
T PTZ00425 157 LLKENVELALKDNSIHNFEIYGENLDPQKYPLSKKNHGKEFLREVAHLRPRSYFISSVIRIRNALAIATHLFFQSRGFLY 236 (586)
T ss_pred CCCccEEEEEecCCCceEEEEeccCCCCCCCCCCccCChhhhhhccceeccCHHHHHHHHHHHHHHHHHHHHHHHCCCEE
Confidence 1444431 1 1 35899999987665 59999999999999
Q ss_pred EcCCccccccCCCCccceee------------------------------------------------------------
Q psy8087 174 VTPPTLVQTQVEGGSTLFSL------------------------------------------------------------ 193 (658)
Q Consensus 174 V~TPiL~~~~~eG~~~~F~~------------------------------------------------------------ 193 (658)
|+||+|++++||||++.|.+
T Consensus 237 I~TPiit~s~~EGa~elF~V~t~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~ 316 (586)
T PTZ00425 237 IHTPLITTSDCEGGGEMFTVTTLLGEDADYRAIPRVNKKNKKGEKREDILNTCNANNNNGNSSSSNAVSSPAYPDQYLID 316 (586)
T ss_pred eeCCeecccCCCCCcceEEeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999998854
Q ss_pred ---ccCCcceeeccCHHHHHHHhcccCCcEEEEeeeeecCCCCCccCcceeeeeeeEeecCCHHHHHHHHHHHHHHHHHH
Q psy8087 194 ---NFFGEPAYLTQSSQLYLETCLPALGDVYCIAQSYRAENSRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDR 270 (658)
Q Consensus 194 ---~~~~~~~~L~~Spqlylk~li~g~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~a~~d~~~~m~~~e~li~~i~~~ 270 (658)
+|||+++||+||||||||++++|++|||+||||||||+++|+||+|||||||+||+|+|++|+|+++|+||++++..
T Consensus 317 ~~~~yF~k~ayL~~S~QLylE~~~~g~~rVf~i~p~FRaE~s~t~RHL~EFt~lE~E~af~d~~d~m~~~E~li~~v~~~ 396 (586)
T PTZ00425 317 YKKDFFSKQAFLTVSGQLSLENLCSSMGDVYTFGPTFRAENSHTSRHLAEFWMIEPEIAFADLYDNMELAESYIKYCIGY 396 (586)
T ss_pred ccccccCcceEEEcCchHHHHHHHhccCCEEEEeceEeCCCCCCCCCCcccceEEEEEecCCHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999889999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcccccccccCC----CC-----CCCCCCcceeeHHHHHHHHHHcCCCCCCCCCcccCCCCCCchhhhhhccc-CCcE
Q psy8087 271 VMATHGDLVRQMNP----NF-----EPPARPFLRMNYADAIEYLRKHEIRKPDNTEYEFGEDIPEMPERKMTDQI-NRPI 340 (658)
Q Consensus 271 ~~~~~~~~~~~~~~----~~-----~~~~~pf~rit~~ea~~~l~~~g~~~~~~~~~~~g~~l~~~~e~~l~~~~-~~p~ 340 (658)
+.+.+...+..++. ++ ..+..||+||||.||+++|++.+... .....||.++...+|++|++++ +.|+
T Consensus 397 vl~~~~~~i~~~~~~~~~~l~~~l~~~~~~pf~rIty~EAi~iL~~~~~~~--~~~~~~G~dL~~e~Er~L~~~~~~~Pv 474 (586)
T PTZ00425 397 VLNNNFDDIYYFEENVETGLISRLKNILDEDFAKITYTNVIDLLQPYSDSF--EVPVKWGMDLQSEHERFVAEQIFKKPV 474 (586)
T ss_pred HhcccccccccccccccccHHHHHHHhcCCCCCcCCHHHHHHHHHHhHHhc--CCCCCcccccchHHHHHHHHHhcCCcE
Confidence 98776544433321 11 01246999999999999998765221 1236899999999999999985 7899
Q ss_pred EEEeCCCCCCCCCCccCCCCcCceeEEEEEeCCcceeeeceeccCCHHHHHHHHHHcCCCCCCCcchHHHhhcCCCCccc
Q psy8087 341 MLCRFPADIKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGIDPAPYYWYTDQRKYGSTPHGG 420 (658)
Q Consensus 341 fi~~~P~~~~pfy~~~~~~~~~~~~~fdL~~~G~~Ei~~G~~r~~d~~~~~~~~~~~g~~~~~~~~yl~a~~~G~pP~gG 420 (658)
||+|||.+++||||+.++++ .++++|||+++|+|||+||++|+|+++.+.+++++.|++++.|+|||++++||||||||
T Consensus 475 FItdyP~~~kPFY~~~~~d~-~~v~~fDLlvpgiGEI~gGsqRe~~~e~L~~~ike~gl~~e~~~wYLd~rryG~pPhgG 553 (586)
T PTZ00425 475 IVYNYPKDLKAFYMKLNEDQ-KTVAAMDVLVPKIGEVIGGSQREDNLERLDKMIKEKKLNMESYWWYRQLRKFGSHPHAG 553 (586)
T ss_pred EEECCccccCccccCcCCCC-CeEEEEeEEccCceEEccCCCccccHHHHHHHHHHcCCChhHHHHHHHHhhCCCCCCce
Confidence 99999999999999887555 78899999999989999999999999999999999999999999999999999999999
Q ss_pred eecchhHHHHHHhcccCcchhhHHHHHh
Q psy8087 421 YGLGLERVLCWLLNQYHVRDKYQLIAKA 448 (658)
Q Consensus 421 ~GiGidRL~m~l~g~~~Irdvi~f~~k~ 448 (658)
||||||||+|+|||.+|||||++||..+
T Consensus 554 fGLGiERLvm~ltGl~nIRDvi~FPR~~ 581 (586)
T PTZ00425 554 FGLGFERLIMLVTGVDNIKDTIPFPRYP 581 (586)
T ss_pred EEEcHHHHHHHHcCCCchheEEECcCCC
Confidence 9999999999999999999999999654
|
|
| >PLN02221 asparaginyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-88 Score=752.45 Aligned_cols=388 Identities=29% Similarity=0.470 Sum_probs=328.5
Q ss_pred ccccccc--cCCCccCCcEEEEeEEeecceecCC-CeEEEEEEcCC--eEEEEEEecccchhhhhhcCCCccEEEEEEEe
Q psy8087 56 EVGYITC--EGPAGYIITNINIPAIPGPPAIPGK-GLMFVTLRDGS--GFIQCVLADILCQTEHALLLSTESSVQFRGRI 130 (658)
Q Consensus 56 ~~~~~~~--~~~~~~~~~~v~~~Grv~~~r~~gk-~l~Fi~LrD~~--~~iQvv~~~~~~~~~~~~~l~~es~V~v~G~l 130 (658)
.+.+++. .+.....|+.|+|+|||+++|.+|| +++|++|||++ |.||||+.++... . ...|+.||+|.|+|.|
T Consensus 34 ~~~~~~~~~~~~~~~~g~~V~I~GWV~~iR~~Gk~~i~Fl~LRDgs~~g~iQvVv~~~~~~-~-~~~L~~ES~V~V~G~V 111 (572)
T PLN02221 34 LIRSILDRPDGGAGLAGQKVRIGGWVKTGREQGKGTFAFLEVNDGSCPANLQVMVDSSLYD-L-STLVATGTCVTVDGVL 111 (572)
T ss_pred EHHHHhccccCChhcCCCEEEEEEEEEehhhCCCceEEEEEEeCCcccccEEEEEcCchhh-H-HhcCCCceEEEEEEEE
Confidence 5566641 2345577899999999999999997 59999999999 7899999765211 1 1258999999999999
Q ss_pred EeCCCC-----ccceEecC------------C------------CceeEEeecCCccc---------CchHHHhhhCCcE
Q psy8087 131 EKVPEE-----NMKVQLIH------------P------------SSYAIVWLGDLKQG---------GYPPEVSLANGIA 172 (658)
Q Consensus 131 ~~~p~~-----~~d~~l~~------------p------------~~R~l~lr~~~~~~---------~~iR~fl~~~gF~ 172 (658)
+..|.. .+|+.+++ | +.|||++|++..++ .+||+||.++||+
T Consensus 112 ~~~~~~~~~~~~iEl~v~~i~vl~~a~~~~~Pi~~~~~~~e~lrr~~hLR~R~~~~~Ai~RiRS~i~~aiR~ff~~~gFi 191 (572)
T PLN02221 112 KVPPEGKGTKQKIELSVEKVIDVGTVDPTKYPLPKTKLTLEFLRDVLHLRSRTNSISAVARIRNALAFATHSFFQEHSFL 191 (572)
T ss_pred EeCCccCCCCccEEEEEeEEEEEecCCCCCCCCCCCcCChHHHhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHCCCE
Confidence 987741 23332221 1 13566666665554 5999999999999
Q ss_pred EEcCCccccccCCCCccceee-----------------------------------------------------------
Q psy8087 173 KVTPPTLVQTQVEGGSTLFSL----------------------------------------------------------- 193 (658)
Q Consensus 173 EV~TPiL~~~~~eG~~~~F~~----------------------------------------------------------- 193 (658)
||+||+|++++||||++.|++
T Consensus 192 EI~TP~Lt~s~~EGg~e~F~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (572)
T PLN02221 192 YIHTPIITTSDCEGAGEMFQVTTLINYTERLEQDLIDNPPPTEADVEAARLIVKERGEVVAQLKAAKASKEEITAAVAEL 271 (572)
T ss_pred EEeCCeeccccCCCCccceeeeecccccccccccccccCcccchhhhhhhhhhhhhcchhhhhhccccchhhhhhhhhhh
Confidence 999999999999999998865
Q ss_pred -------------------------------ccCCcceeeccCHHHHHHHhcccCCcEEEEeeeeecCCCCCccCcceee
Q psy8087 194 -------------------------------NFFGEPAYLTQSSQLYLETCLPALGDVYCIAQSYRAENSRTRRHLAEYT 242 (658)
Q Consensus 194 -------------------------------~~~~~~~~L~~Spqlylk~li~g~~rvfeI~~~FR~E~~~~~rHl~EFt 242 (658)
+|||+++||+||||||||++++|++|||+||||||||+++|+|||||||
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dyFg~~ayLtqS~QLy~e~~~~~l~rVfeIgP~FRAE~s~T~RHL~EFt 351 (572)
T PLN02221 272 KIAKESLAHIEERSKLKPGLPKKDGKIDYSKDFFGRQAFLTVSGQLQVETYACALSSVYTFGPTFRAENSHTSRHLAEFW 351 (572)
T ss_pred hhhhhhhhhhhhhhhcccCCcccccccccccccCCCCeeeccCHHHHHHHHHHhcCCeEEEccceecCCCCCCccccccc
Confidence 6999999999999999999888999999999999999999999999999
Q ss_pred eeeeEeecCCHHHHHHHHHHHHHHHHHHHhhcccccccccCCCC--------C-CCCCCcceeeHHHHHHHHHHc---CC
Q psy8087 243 HVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGDLVRQMNPNF--------E-PPARPFLRMNYADAIEYLRKH---EI 310 (658)
Q Consensus 243 ~lE~e~a~~d~~~~m~~~e~li~~i~~~~~~~~~~~~~~~~~~~--------~-~~~~pf~rit~~ea~~~l~~~---g~ 310 (658)
|||+||+|+|++|+|+++|+||+++++.+.+++.+.+..++.++ . .++.||+||||.||+++|++. |.
T Consensus 352 mlE~Emaf~d~~dvm~l~E~lv~~i~~~l~~~~~~~l~~l~~~~~~~~~~~l~~~~~~pf~RIty~EAi~~L~~~~~~g~ 431 (572)
T PLN02221 352 MVEPEIAFADLEDDMNCAEAYVKYMCKWLLDKCFDDMELMAKNFDSGCIDRLRMVASTPFGRITYTEAIELLEEAVAKGK 431 (572)
T ss_pred ceeeeeecCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcCchhhhhhhhccCCCceEEEHHHHHHHHHhhhhcCC
Confidence 99999999999999999999999999999887654433221111 0 135699999999999999874 43
Q ss_pred CCCCCCCcccCCCCCCchhhhhhcc-cCCcEEEEeCCCCCCCCCCccCCCCcCceeEEEEEeCCcceeeeceeccCCHHH
Q psy8087 311 RKPDNTEYEFGEDIPEMPERKMTDQ-INRPIMLCRFPADIKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEE 389 (658)
Q Consensus 311 ~~~~~~~~~~g~~l~~~~e~~l~~~-~~~p~fi~~~P~~~~pfy~~~~~~~~~~~~~fdL~~~G~~Ei~~G~~r~~d~~~ 389 (658)
+.. ....||.++...+|++|++. +..|+||+|||.+++||||+. ++|+.++++||||++|+|||++|++|+|+++.
T Consensus 432 ~~~--~~~~~G~dl~~e~Er~L~~~~~~~pvfv~dyP~~~~pfy~~~-~~d~~~~~~fDLl~~g~~El~~g~~R~~r~e~ 508 (572)
T PLN02221 432 EFD--NNVEWGIDLASEHERYLTEVLFQKPLIVYNYPKGIKAFYMRL-NDDEKTVAAMDVLVPKVGELIGGSQREERYDV 508 (572)
T ss_pred CCC--CCcchhhhhhHHHHHHHHHHhcCCcEEEEcCChhhCcccccC-CCCCceEEEEEEecCCceEECCHHHHHHHHHH
Confidence 221 23579999999999999998 579999999999999999765 45777889999999998999999999999999
Q ss_pred HHHHHHHcCCCCCCCcchHHHhhcCCCCccceecchhHHHHHHhcccCcchhhHHHHHh
Q psy8087 390 LLAGYKREGIDPAPYYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRDKYQLIAKA 448 (658)
Q Consensus 390 ~~~~~~~~g~~~~~~~~yl~a~~~G~pP~gG~GiGidRL~m~l~g~~~Irdvi~f~~k~ 448 (658)
+.++++++|++++.|+|||++++||||||||||||||||+|+++|..|||||++||..+
T Consensus 509 l~~~~~~~g~~~~~~~~yLda~~~G~pPh~G~GlGiERLvm~l~g~~nIRdvi~FPR~~ 567 (572)
T PLN02221 509 IKQRIEEMGLPIEPYEWYLDLRRYGTVKHCGFGLGFERMILFATGIDNIRDVIPFPRYP 567 (572)
T ss_pred HHHHHHHcCCChhhhHHHHHHhhCCCCCCceEEEeHHHHHHHHcCCCchheEeecCCCc
Confidence 99999999999999999999999999999999999999999999999999999998643
|
|
| >PLN02603 asparaginyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-88 Score=750.93 Aligned_cols=393 Identities=28% Similarity=0.460 Sum_probs=333.6
Q ss_pred CCCccccccccc--cCCCccCCcEEEEeEEeecceecCCCeEEEEEEcCCe--EEEEEEecccchhhhh-h--cCCCccE
Q psy8087 51 FPSPCEVGYITC--EGPAGYIITNINIPAIPGPPAIPGKGLMFVTLRDGSG--FIQCVLADILCQTEHA-L--LLSTESS 123 (658)
Q Consensus 51 ~~~~~~~~~~~~--~~~~~~~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~--~iQvv~~~~~~~~~~~-~--~l~~es~ 123 (658)
++....+.++.. .......|++|+|+|||+++|.+| +++|++|+|+++ .||||++++.. .+.. . .|+.||+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~g~~V~v~GwV~~iR~~g-~~~Fi~l~Dgs~~~~lQ~v~~~~~~-~~~~l~~~~l~~gs~ 163 (565)
T PLN02603 86 FRKKLRIADVKGGEDEGLARVGKTLNVMGWVRTLRAQS-SVTFIEVNDGSCLSNMQCVMTPDAE-GYDQVESGLITTGAS 163 (565)
T ss_pred cCCceEhhhcccccccccccCCCEEEEEEEEEEEEeCC-CeEEEEEECCCCCEeEEEEEECcHH-HHHHHhhcCCCCCCE
Confidence 334445566652 123456799999999999999776 599999999997 59999976532 2322 2 4999999
Q ss_pred EEEEEEeEeCCCCc--cceEecC-----------C------------CceeEEeecCCccc---------CchHHHhhhC
Q psy8087 124 VQFRGRIEKVPEEN--MKVQLIH-----------P------------SSYAIVWLGDLKQG---------GYPPEVSLAN 169 (658)
Q Consensus 124 V~v~G~l~~~p~~~--~d~~l~~-----------p------------~~R~l~lr~~~~~~---------~~iR~fl~~~ 169 (658)
|.|+|.+..+|.+. +|+.++. | ..+||++|++..++ +++|+||.++
T Consensus 164 V~V~G~v~~~~~~~~~~EL~v~~i~vlg~a~~~~Pi~~~~~s~e~lr~~~hLr~Rt~~~~ai~RiRS~i~~air~ff~~~ 243 (565)
T PLN02603 164 VLVQGTVVSSQGGKQKVELKVSKIVVVGKSDPSYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQEN 243 (565)
T ss_pred EEEEEEEEecCCCCccEEEEEeEEEEEECCCCCCCCcccccchhhhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 99999999888665 4443321 1 13688999876544 5999999999
Q ss_pred CcEEEcCCccccccCCCCccceee------------------------------ccCCcceeeccCHHHHHHHhcccCCc
Q psy8087 170 GIAKVTPPTLVQTQVEGGSTLFSL------------------------------NFFGEPAYLTQSSQLYLETCLPALGD 219 (658)
Q Consensus 170 gF~EV~TPiL~~~~~eG~~~~F~~------------------------------~~~~~~~~L~~Spqlylk~li~g~~r 219 (658)
||+||+||+|++++||||++.|.+ +|||+++||+||||||||+++.|++|
T Consensus 244 gF~eV~TPiLt~s~~EGA~e~F~Vttl~~~~~~~~~~~~~~lp~~~~~~~~~~~dyF~~~~~LtvS~QL~~E~~~~~l~r 323 (565)
T PLN02603 244 GFVWVSSPIITASDCEGAGEQFCVTTLIPNSAENGGSLVDDIPKTKDGLIDWSQDFFGKPAFLTVSGQLNGETYATALSD 323 (565)
T ss_pred CCEEEECCeecccCCCccccCceeeeccccccccccccccccccCcccccccchhhhCcceeeccCchHHHHHHHhcccc
Confidence 999999999999999999997733 58999999999999999998889999
Q ss_pred EEEEeeeeecCCCCCccCcceeeeeeeEeecCCHHHHHHHHHHHHHHHHHHHhhcccccccccCCCC---------CCCC
Q psy8087 220 VYCIAQSYRAENSRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGDLVRQMNPNF---------EPPA 290 (658)
Q Consensus 220 vfeI~~~FR~E~~~~~rHl~EFt~lE~e~a~~d~~~~m~~~e~li~~i~~~~~~~~~~~~~~~~~~~---------~~~~ 290 (658)
||+||||||||+++|+||||||||||+||+|+|++|+|+++|++|+++++.+.+++.+.++.++... ..+.
T Consensus 324 Vy~igp~FRaE~s~T~RHL~EF~mlE~E~af~dl~d~m~~~E~~l~~~~~~v~~~~~~el~~~~~~~~~~~~~~l~~~~~ 403 (565)
T PLN02603 324 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLNDDMACATAYLQYVVKYILENCKEDMEFFNTWIEKGIIDRLSDVVE 403 (565)
T ss_pred eEEEecceeCCCCCCccccccceeeeeeeecCCHHHHHHHHHHHHHHHHHHHHcccHhHHHhcCCcccccHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999988755443332211 0134
Q ss_pred CCcceeeHHHHHHHHHHcCCCCCCCCCcccCCCCCCchhhhhhccc--CCcEEEEeCCCCCCCCCCccCCCCcCceeEEE
Q psy8087 291 RPFLRMNYADAIEYLRKHEIRKPDNTEYEFGEDIPEMPERKMTDQI--NRPIMLCRFPADIKSFYMSKCPENPALTESVD 368 (658)
Q Consensus 291 ~pf~rit~~ea~~~l~~~g~~~~~~~~~~~g~~l~~~~e~~l~~~~--~~p~fi~~~P~~~~pfy~~~~~~~~~~~~~fd 368 (658)
.||+||||.||+++|++.+.+.. ...+||.+|..++|++|.+.+ ++|+||+|||.+++||||+.+ +|+.++++||
T Consensus 404 ~~f~rity~EAi~iL~~~~~~~~--~~~~~g~dl~~e~Er~L~~~~~~~~PvfVtdyP~~ikpFYm~~~-~d~~~v~~fD 480 (565)
T PLN02603 404 KNFVQLSYTDAIELLLKAKKKFE--FPVKWGLDLQSEHERYITEEAFGGRPVIIRDYPKEIKAFYMREN-DDGKTVAAMD 480 (565)
T ss_pred CCCCCCCHHHHHHHHHHhccccC--CCCCccccccHHHHHHHHHHhccCCCEEEECCccccCccccccC-CCCCeeEEEE
Confidence 69999999999999988754422 346899999999999999876 379999999999999997655 5688999999
Q ss_pred EEeCCcceeeeceeccCCHHHHHHHHHHcCCCCCCCcchHHHhhcCCCCccceecchhHHHHHHhcccCcchhhHHHHHh
Q psy8087 369 VLFPNVGEVIGGSMRIWDPEELLAGYKREGIDPAPYYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRDKYQLIAKA 448 (658)
Q Consensus 369 L~~~G~~Ei~~G~~r~~d~~~~~~~~~~~g~~~~~~~~yl~a~~~G~pP~gG~GiGidRL~m~l~g~~~Irdvi~f~~k~ 448 (658)
|+++|+|||+||++|+|+++.+.+++++.|++++.|+|||++++||+|||||||||||||+|+|||.+|||||++||..+
T Consensus 481 Ll~p~~gEl~gGsqRe~r~e~L~~~~~e~g~~~e~y~wYLdl~r~G~pPhgGfGlG~ERLvm~ltg~~nIRdvi~FPR~~ 560 (565)
T PLN02603 481 MLVPRVGELIGGSQREERLEYLEARLDELKLNKESYWWYLDLRRYGSVPHAGFGLGFERLVQFATGIDNIRDAIPFPRVP 560 (565)
T ss_pred EEecCceEecCHHHHHhhHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCCceeEEcHHHHHHHHhCCCchhheeeccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998643
|
|
| >PLN02532 asparagine-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-87 Score=746.65 Aligned_cols=360 Identities=24% Similarity=0.397 Sum_probs=311.7
Q ss_pred ecCCCeEEEEEEcCCeE--EEEEEecccchhhhhhcCCCccEEEEEEEeEeCCC----CccceEecC------------C
Q psy8087 84 IPGKGLMFVTLRDGSGF--IQCVLADILCQTEHALLLSTESSVQFRGRIEKVPE----ENMKVQLIH------------P 145 (658)
Q Consensus 84 ~~gk~l~Fi~LrD~~~~--iQvv~~~~~~~~~~~~~l~~es~V~v~G~l~~~p~----~~~d~~l~~------------p 145 (658)
|..|+++||+|||++|. ||||++++.... ...|+.|++|.|+|.|+..+. +.+|+.+++ |
T Consensus 130 r~~g~i~FI~LrDGSg~~~lQvVv~~~~~~~--~~~L~~Es~V~V~G~V~~~~~~~~~g~iEl~v~~i~VLg~a~~~p~P 207 (633)
T PLN02532 130 PPPPSVAYLLISDGSCVASLQVVVDSALAPL--TQLMATGTCILAEGVLKLPLPAQGKHVIELEVEKILHIGTVDPEKYP 207 (633)
T ss_pred ccCCCcEEEEEECCCCccceEEEEeCCcccH--hhcCCCceEEEEEEEEEecCCCCCCCcEEEEeeEEEEEecCCCCCCc
Confidence 34456999999999998 999998664321 147899999999999998732 223332211 1
Q ss_pred ------------CceeEEeecCCccc---------CchHHHhhhCCcEEEcCCccccccCCCCccc--------------
Q psy8087 146 ------------SSYAIVWLGDLKQG---------GYPPEVSLANGIAKVTPPTLVQTQVEGGSTL-------------- 190 (658)
Q Consensus 146 ------------~~R~l~lr~~~~~~---------~~iR~fl~~~gF~EV~TPiL~~~~~eG~~~~-------------- 190 (658)
++||||||++..++ .+||+||.++||+||+||+|++++||||++.
T Consensus 208 i~~k~~~~E~LR~~RhLdLRt~~~~ailRiRS~i~~aiR~ff~~~GFiEV~TPiLT~s~~EGa~elF~v~t~~~~~~~~~ 287 (633)
T PLN02532 208 LSKKRLPLDMLRDFSHFRPRTTTVASVTRVRSALTHATHTFFQDHGFLYVQVPIITTTDATGFGEMFRVTTLLGKSDDKE 287 (633)
T ss_pred cccccCCHHHHhhCcceecCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEeeCCeecccCCCccccccceecccccccccc
Confidence 35999999987766 5999999999999999999999999999976
Q ss_pred ---------------------------------------------------------------------------eeecc
Q psy8087 191 ---------------------------------------------------------------------------FSLNF 195 (658)
Q Consensus 191 ---------------------------------------------------------------------------F~~~~ 195 (658)
|+++|
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~dy 367 (633)
T PLN02532 288 EKKPVHETEGISLEAVKAAIKEKTNLVEELKRSESNREALVAAEQDLRKTNQLASQLEAKEKLKTGTSVKADKLSFSKDF 367 (633)
T ss_pred ccccccccccccchhhhhhhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 55679
Q ss_pred CCcceeeccCHHHHHHHhcccCCcEEEEeeeeecCCCCCccCcceeeeeeeEeecCCHHHHHHHHHHHHHHHHHHHhhcc
Q psy8087 196 FGEPAYLTQSSQLYLETCLPALGDVYCIAQSYRAENSRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATH 275 (658)
Q Consensus 196 ~~~~~~L~~Spqlylk~li~g~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~a~~d~~~~m~~~e~li~~i~~~~~~~~ 275 (658)
||+++||+||||||||++++||+|||+||||||||+++|+||||||||||+||+|+||+|+|+++|+||+++++.+.+++
T Consensus 368 Fg~~ayLtqS~QLylE~~~~gl~rVYeIgP~FRAE~s~T~RHL~EFtmlE~Emaf~d~~dvM~l~E~lI~~v~k~v~~~~ 447 (633)
T PLN02532 368 FSRPTYLTVSGRLHLESYACALGNVYTFGPRFRADRIDSARHLAEMWMVEVEMAFSELEDAMNCAEDYFKFLCKWVLENC 447 (633)
T ss_pred CCCCeeeccCHHHHHHHHHHhcCceEEEccceecCCCCCCcccccccceeeeehhcCHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999988999999999999999999999999999999999999999999999999999999999887
Q ss_pred cccccccCCCC---------CCCCCCcceeeHHHHHHHHHHcCCCCCCCCCcccCCCCCCchhhhhhcc-cCCcEEEEeC
Q psy8087 276 GDLVRQMNPNF---------EPPARPFLRMNYADAIEYLRKHEIRKPDNTEYEFGEDIPEMPERKMTDQ-INRPIMLCRF 345 (658)
Q Consensus 276 ~~~~~~~~~~~---------~~~~~pf~rit~~ea~~~l~~~g~~~~~~~~~~~g~~l~~~~e~~l~~~-~~~p~fi~~~ 345 (658)
...++.++.++ ..++.||+||||.||+++|++.+.. +......||.+|...+|++|.+. ++.|+||+||
T Consensus 448 ~~el~~l~~~~~~~~~~~le~~~~~pf~RIty~EAi~iL~~~~~~-~~e~~~~~g~dL~~e~Er~L~~~~~~~PvFVtdy 526 (633)
T PLN02532 448 SEDMKFVSKRIDKTISTRLEAIISSSLQRISYTEAVDLLKQATDK-KFETKPEWGIALTTEHLSYLADEIYKKPVIIYNY 526 (633)
T ss_pred hhhhhhhcccCCcchhhhhhcccCCCceEEEHHHHHHHHHHhcCC-CcccccccCCccChHHHHHHHHHHcCCCEEEECC
Confidence 55444333211 1245799999999999999876421 11124679999999999999987 6899999999
Q ss_pred CCCCCCCCCccCCCCcCceeEEEEEeCCcceeeeceeccCCHHHHHHHHHHcCCCCCCCcchHHHhhcCCCCccceecch
Q psy8087 346 PADIKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGIDPAPYYWYTDQRKYGSTPHGGYGLGL 425 (658)
Q Consensus 346 P~~~~pfy~~~~~~~~~~~~~fdL~~~G~~Ei~~G~~r~~d~~~~~~~~~~~g~~~~~~~~yl~a~~~G~pP~gG~GiGi 425 (658)
|.+++||||+.+ +|+.++++|||+++|+|||+||++|+|+++.+.+++++.|++++.|+|||++++||+||||||||||
T Consensus 527 P~~ikPFY~~~~-~d~~~v~~FDLlvp~~GEIigGsqRE~r~e~L~~~~ke~Gld~e~~ewYLdlrryG~pPHgGfGLG~ 605 (633)
T PLN02532 527 PKELKPFYVRLN-DDGKTVAAFDLVVPKVGTVITGSQNEERMDILNARIEELGLPREQYEWYLDLRRHGTVKHSGFSLGF 605 (633)
T ss_pred ChhhchhhCCcC-CCCCceEEEEEecCCCeEEeeCcEeHHHHHHHHHHHHHcCCChhhHHHHHHHHHcCCCCCeEEEEhH
Confidence 999999999776 5678999999999988899999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhcccCcchhhHHHHH
Q psy8087 426 ERVLCWLLNQYHVRDKYQLIAK 447 (658)
Q Consensus 426 dRL~m~l~g~~~Irdvi~f~~k 447 (658)
|||+|||||.+|||||++||..
T Consensus 606 ERLvm~ltGl~nIRDvi~FPR~ 627 (633)
T PLN02532 606 ELMVLFATGLPDVRDAIPFPRS 627 (633)
T ss_pred HHHHHHHhCCCchheEeecCCC
Confidence 9999999999999999999854
|
|
| >PRK03932 asnC asparaginyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-87 Score=739.62 Aligned_cols=377 Identities=33% Similarity=0.532 Sum_probs=328.2
Q ss_pred ccCCcEEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccc-hhh-hhhcCCCccEEEEEEEeEeCCCC--ccceEe
Q psy8087 67 GYIITNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILC-QTE-HALLLSTESSVQFRGRIEKVPEE--NMKVQL 142 (658)
Q Consensus 67 ~~~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~-~~~-~~~~l~~es~V~v~G~l~~~p~~--~~d~~l 142 (658)
...|++|+|+|||+++|.+| +++|++|||++|.+|+++..+.. ..+ ....|+.||+|.|+|.+.+++.+ .+++.+
T Consensus 13 ~~~~~~V~i~G~v~~~R~~g-~~~Fi~lrD~~g~iq~~~~~~~~~~~~~~~~~l~~~s~v~v~G~v~~~~~~~~~~el~~ 91 (450)
T PRK03932 13 KYVGQEVTVRGWVRTKRDSG-KIAFLQLRDGSCFKQLQVVKDNGEEYFEEIKKLTTGSSVIVTGTVVESPRAGQGYELQA 91 (450)
T ss_pred ccCCCEEEEEEEEEEEEeCC-CeEEEEEECCCCcEEEEEEcCCChHHHHHHhcCCCCcEEEEEEEEEcCCCCCCCEEEEE
Confidence 35689999999999999986 58999999999999998875532 223 23579999999999999988753 222221
Q ss_pred cC-----------C------------CceeEEeecCCccc---------CchHHHhhhCCcEEEcCCccccccCCCCccc
Q psy8087 143 IH-----------P------------SSYAIVWLGDLKQG---------GYPPEVSLANGIAKVTPPTLVQTQVEGGSTL 190 (658)
Q Consensus 143 ~~-----------p------------~~R~l~lr~~~~~~---------~~iR~fl~~~gF~EV~TPiL~~~~~eG~~~~ 190 (658)
.+ | +.||||+|++..++ +++|+||.++||+||+||+|+++++||++++
T Consensus 92 ~~i~vl~~~~~~~p~~~~~~~~~~~~~~r~l~lR~~~~~~~l~~Rs~i~~~iR~f~~~~gf~EV~TP~L~~~~~eg~~~~ 171 (450)
T PRK03932 92 TKIEVIGEDPEDYPIQKKRHSIEFLREIAHLRPRTNKFGAVMRIRNTLAQAIHEFFNENGFVWVDTPIITASDCEGAGEL 171 (450)
T ss_pred EEEEEccCCCCCCCCCccccChHHHhhCceeeccCHHHHHHHHHHHHHHHHHHHHHHHCCCEEecCCceeccCCCCCCCc
Confidence 10 0 35999999986544 6999999999999999999998899999999
Q ss_pred eee---------ccCCcceeeccCHHHHHHHhcccCCcEEEEeeeeecCCCCCccCcceeeeeeeEeecCCHHHHHHHHH
Q psy8087 191 FSL---------NFFGEPAYLTQSSQLYLETCLPALGDVYCIAQSYRAENSRTRRHLAEYTHVEAECAFLTFDDLLDKLE 261 (658)
Q Consensus 191 F~~---------~~~~~~~~L~~Spqlylk~li~g~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~a~~d~~~~m~~~e 261 (658)
|.+ +|||.++||+||||||||+++.|++||||||||||||+++++|||||||||||||+|+|++|+|+++|
T Consensus 172 F~v~~~~~~~~~~~~~~~~~L~~Spql~lq~l~~g~~rVf~i~~~FR~E~~~t~rHl~EFt~lE~e~~~~~~~~~m~~~e 251 (450)
T PRK03932 172 FRVTTLDLDFSKDFFGKEAYLTVSGQLYAEAYAMALGKVYTFGPTFRAENSNTRRHLAEFWMIEPEMAFADLEDNMDLAE 251 (450)
T ss_pred eEeecccccccccccCCCcccccCHHHHHHHHHhccCCeEEeeeccccCCCCCccccccccccceEEeccCHHHHHHHHH
Confidence 977 89999999999999999998779999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcccccccccCCC-----C---C-CCCCCcceeeHHHHHHHHHHcCCCCCCCCCcccCCCCCCchhhhh
Q psy8087 262 DLICDTVDRVMATHGDLVRQMNPN-----F---E-PPARPFLRMNYADAIEYLRKHEIRKPDNTEYEFGEDIPEMPERKM 332 (658)
Q Consensus 262 ~li~~i~~~~~~~~~~~~~~~~~~-----~---~-~~~~pf~rit~~ea~~~l~~~g~~~~~~~~~~~g~~l~~~~e~~l 332 (658)
+||++++..+.+++...++.++.. + . .++.||++|||.||++++++.|.+... ...||.+++..+|+++
T Consensus 252 ~li~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~rity~eA~~~l~~~~~~~~~--~~~~g~~l~~~~e~~l 329 (450)
T PRK03932 252 EMLKYVVKYVLENCPDDLEFLNRRVDKGDIERLENFIESPFPRITYTEAIEILQKSGKKFEF--PVEWGDDLGSEHERYL 329 (450)
T ss_pred HHHHHHHHHHHHhhHHHHHHhccccCchHHHHHHhhcCCCceEeEHHHHHHHHHHcCCCcCC--CCCcccccChHHHHHH
Confidence 999999999987664433322221 0 0 134699999999999999888765432 2478999999999999
Q ss_pred hc-ccCCcEEEEeCCCCCCCCCCccCCCCcCceeEEEEEeCCcceeeeceeccCCHHHHHHHHHHcCCCCCCCcchHHHh
Q psy8087 333 TD-QINRPIMLCRFPADIKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGIDPAPYYWYTDQR 411 (658)
Q Consensus 333 ~~-~~~~p~fi~~~P~~~~pfy~~~~~~~~~~~~~fdL~~~G~~Ei~~G~~r~~d~~~~~~~~~~~g~~~~~~~~yl~a~ 411 (658)
.+ +++.|+||+|||.+++|||++.++++ ++++||||++||+|||++|++|+|+++.+.+++++.|++++.++||++++
T Consensus 330 ~~~~~~~pvfI~~yP~~~~pfy~~~~~~~-~~~~~fdLl~~g~~El~~g~~r~~~~~~l~~~~~~~g~~~~~~~~yl~~~ 408 (450)
T PRK03932 330 AEEHFKKPVFVTNYPKDIKAFYMRLNPDG-KTVAAMDLLAPGIGEIIGGSQREERLDVLEARIKELGLNKEDYWWYLDLR 408 (450)
T ss_pred HHHhcCCcEEEECCCcccCcccCcCCCCC-CEEEEEEEEcCCCceeCCHHHHhhhHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 88 88999999999999999998888877 99999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCccceecchhHHHHHHhcccCcchhhHHHHH
Q psy8087 412 KYGSTPHGGYGLGLERVLCWLLNQYHVRDKYQLIAK 447 (658)
Q Consensus 412 ~~G~pP~gG~GiGidRL~m~l~g~~~Irdvi~f~~k 447 (658)
+||||||||||||||||+|+++|.+|||||++||..
T Consensus 409 ~~G~pP~gG~GiGidRL~m~l~g~~nIrdv~~FPr~ 444 (450)
T PRK03932 409 RYGSVPHSGFGLGFERLVAYITGLDNIRDVIPFPRT 444 (450)
T ss_pred HcCCCCCCcEeehHHHHHHHHhCCCcHhhhccCcCC
Confidence 999999999999999999999999999999999854
|
|
| >PTZ00385 lysyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-87 Score=747.03 Aligned_cols=395 Identities=18% Similarity=0.242 Sum_probs=322.2
Q ss_pred CCCCCCCccccccccccCCC-----ccCCcEEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccc--h-hhh--hh
Q psy8087 47 PFPLFPSPCEVGYITCEGPA-----GYIITNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILC--Q-TEH--AL 116 (658)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~--~-~~~--~~ 116 (658)
.|-.|..++++.++.+.... ....+.|+|+|||+++|.+|| ++|++|||++|.||||++++.. . .+. ..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~vaGrV~~~R~~Gk-~~F~~LrD~~G~IQvv~~~~~~~~~~~~~~~~~ 157 (659)
T PTZ00385 79 AYSSFRGITPISEVRERYGYLASGDRAAQATVRVAGRVTSVRDIGK-IIFVTIRSNGNELQVVGQVGEHFTREDLKKLKV 157 (659)
T ss_pred ccccCcccccHHHHHHHhhccccccccCCCEEEEEEEEEeeeccCC-eEEEEEEECCceEEEEEECCccCCHHHHHHHHh
Confidence 56668888888887543221 122456999999999999996 8999999999999999987653 1 232 23
Q ss_pred cCCCccEEEEEEEeEeCCCCc---------------------------------cceEecCCCceeEEeecCCccc----
Q psy8087 117 LLSTESSVQFRGRIEKVPEEN---------------------------------MKVQLIHPSSYAIVWLGDLKQG---- 159 (658)
Q Consensus 117 ~l~~es~V~v~G~l~~~p~~~---------------------------------~d~~l~~p~~R~l~lr~~~~~~---- 159 (658)
.++.||+|.|+|.+..++.+. +|++++ +||||||++...+
T Consensus 158 ~l~~gdiV~V~G~v~~t~~GeleI~~~~i~lLska~~~~~~~~p~~~k~~~~~d~e~R~r---~RyLDL~~n~~~~~ifr 234 (659)
T PTZ00385 158 SLRVGDIIGADGVPCRMQRGELSVAASRMLILSPYVCTDQVVCPNLRGFTVLQDNDVKYR---YRFTDMMTNPCVIETIK 234 (659)
T ss_pred CCCCCCEEEEEEEEEecCCceEEEEeeEEEEechhhhccccCCCCCccccccCChhhhcc---cceeeeecCHHHHHHHH
Confidence 699999999999987765443 233333 4999998765332
Q ss_pred ------CchHHHhhhCCcEEEcCCccccccCCCCccceee--ccCCcceeeccCHHHHHHHhcc-cCCcEEEEeeeeecC
Q psy8087 160 ------GYPPEVSLANGIAKVTPPTLVQTQVEGGSTLFSL--NFFGEPAYLTQSSQLYLETCLP-ALGDVYCIAQSYRAE 230 (658)
Q Consensus 160 ------~~iR~fl~~~gF~EV~TPiL~~~~~eG~~~~F~~--~~~~~~~~L~~Spqlylk~li~-g~~rvfeI~~~FR~E 230 (658)
++||+||.++||+||+||+|++...|+++++|.+ ++|+.++||+||||||||+|++ |++||||||||||||
T Consensus 235 ~Rs~I~~aiR~ff~~~gFlEVeTPiL~~~~~ga~a~pF~t~~n~~~~~~yL~~SPELylKrLivgG~erVyeIg~~FRnE 314 (659)
T PTZ00385 235 KRHVMLQALRDYFNERNFVEVETPVLHTVASGANAKSFVTHHNANAMDLFLRVAPELHLKQCIVGGMERIYEIGKVFRNE 314 (659)
T ss_pred HHHHHHHHHHHHHHHCCCEEeeCCEeeccCCCCCccceEeecccCCCCEEecCChHHHHHHHhhcccCCEEEEeceecCC
Confidence 6999999999999999999986666667899954 6789999999999999999987 899999999999999
Q ss_pred CCCCccCcceeeeeeeEeecCCHHHHHHHHHHHHHHHHHHHhhcccccccc---cCC--CCCCCCCCcceeeHHHHHHHH
Q psy8087 231 NSRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGDLVRQ---MNP--NFEPPARPFLRMNYADAIEYL 305 (658)
Q Consensus 231 ~~~~~rHl~EFt~lE~e~a~~d~~~~m~~~e~li~~i~~~~~~~~~~~~~~---~~~--~~~~~~~pf~rit~~ea~~~l 305 (658)
+++ .||||||||||||++|+||+|||+++|+||++++..+.+.....+.. .+. ++ ....||+|+||.|++..+
T Consensus 315 ~~~-~rH~pEFTmlE~y~a~~d~~d~m~l~E~li~~~~~~v~g~~~~~~~~~~~~g~~~~i-~~~~Pf~Rit~~d~~~e~ 392 (659)
T PTZ00385 315 DAD-RSHNPEFTSCEFYAAYHTYEDLMPMTEDIFRQLAMRVNGTTVVQIYPENAHGNPVTV-DLGKPFRRVSVYDEIQRM 392 (659)
T ss_pred CCC-CCccccccceeeeeecCCHHHHHHHHHHHHHHHHHHhcCCeeEEeeccccCCCcccc-cCCCCceEEeHHHHHHHH
Confidence 997 59999999999999999999999999999999999998754322210 011 11 234699999977776653
Q ss_pred HHcCCCCCCC---C---------------------CcccCCCCCCchhhhhhcccCCcEEEEeCCCCCCCCCCccCCCCc
Q psy8087 306 RKHEIRKPDN---T---------------------EYEFGEDIPEMPERKMTDQINRPIMLCRFPADIKSFYMSKCPENP 361 (658)
Q Consensus 306 ~~~g~~~~~~---~---------------------~~~~g~~l~~~~e~~l~~~~~~p~fi~~~P~~~~pfy~~~~~~~~ 361 (658)
.|++.+.. . ...+|..++.+++.++++.+.+|+||+|||.+++|| ++.+++||
T Consensus 393 --~G~d~~~~~dl~~~~e~~~~~~~~~~~gi~~~~~~~~g~~~~~lfe~~ve~~l~qPtFI~dyP~e~sPL-ak~~~~dp 469 (659)
T PTZ00385 393 --SGVEFPPPNELNTPKGIAYMSVVMLRYNIPLPPVRTAAKMFEKLIDFFITDRVVEPTFVMDHPLFMSPL-AKEQVSRP 469 (659)
T ss_pred --hCCCCCccccCCCHHHHHHHHHHHHHcCCCCCcccchhHHHHHHHHHHHHHhhCCcEEEeCCccccCcc-cccCCCCC
Confidence 46654311 0 112244455667888999999999999999999999 88999999
Q ss_pred CceeEEEEEeCCcceeeeceeccCCHHHHHHHHHH-----cCCCCCCC---cchHHHhhcCCCCccceecchhHHHHHHh
Q psy8087 362 ALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKR-----EGIDPAPY---YWYTDQRKYGSTPHGGYGLGLERVLCWLL 433 (658)
Q Consensus 362 ~~~~~fdL~~~G~~Ei~~G~~r~~d~~~~~~~~~~-----~g~~~~~~---~~yl~a~~~G~pP~gG~GiGidRL~m~l~ 433 (658)
++++|||||++|+ ||+|||+|+|||.+|++||++ .+.|++.+ +|||+|++||||||||||||||||+|+||
T Consensus 470 ~~teRFELfi~G~-EiaNGysELnDp~eQr~Rfe~q~~~k~~gd~ea~~~DedfL~AleyGmPPtgG~GIGIDRLvMllt 548 (659)
T PTZ00385 470 GLAERFELFVNGI-EYCNAYSELNDPHEQYHRFQQQLVDRQGGDEEAMPLDETFLKSLQVGLPPTAGWGMGIDRALMLLT 548 (659)
T ss_pred CeEEEEEEEeCCe-EeeecccccCCHHHHHHHHHHHHHHHhcCCchhhccHHHHHHHHHcCCCCCCceEEcHHHHHHHHc
Confidence 9999999999997 999999999999999999954 35566654 89999999999999999999999999999
Q ss_pred cccCcchhhHHHHHhhhhhhh
Q psy8087 434 NQYHVRDKYQLIAKAQLKKVS 454 (658)
Q Consensus 434 g~~~Irdvi~f~~k~~lk~~~ 454 (658)
|.+|||||++| |.||+..
T Consensus 549 g~~sIReVilF---P~mr~~~ 566 (659)
T PTZ00385 549 NSSNIRDGIIF---PLLRQDI 566 (659)
T ss_pred CCcchhheecC---ccccccc
Confidence 99999999999 6777753
|
|
| >PTZ00401 aspartyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-87 Score=744.31 Aligned_cols=370 Identities=27% Similarity=0.427 Sum_probs=318.4
Q ss_pred CCcEEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEeccc-c-h-hh-hhhcCCCccEEEEEEEeEeCCC-------Cc
Q psy8087 69 IITNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADIL-C-Q-TE-HALLLSTESSVQFRGRIEKVPE-------EN 137 (658)
Q Consensus 69 ~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~-~-~-~~-~~~~l~~es~V~v~G~l~~~p~-------~~ 137 (658)
.|++|+|+|||+++|.+|| ++|++|||+++.||+|++.+. . . .+ ....|+.||+|.|+|+|...+. +.
T Consensus 77 ~g~~V~v~Grv~~~R~~Gk-~~Fl~LRd~~~~iQ~v~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~~~~~~~ 155 (550)
T PTZ00401 77 VDKTVLIRARVSTTRKKGK-MAFMVLRDGSDSVQAMAAVEGDVPKEMIDFIGQIPTESIVDVEATVCKVEQPITSTSHSD 155 (550)
T ss_pred CCCEEEEEEEEEEEecCCC-eEEEEEEeCCcCEEEEEECCCccCHHHHHHHhcCCCCCEEEEEEEEEecCccCCCCCCcc
Confidence 7899999999999999995 899999999999999997432 1 1 12 2357999999999999886321 11
Q ss_pred -------------------------------------cceEecCCCceeEEeecCCccc---------CchHHHhhhCCc
Q psy8087 138 -------------------------------------MKVQLIHPSSYAIVWLGDLKQG---------GYPPEVSLANGI 171 (658)
Q Consensus 138 -------------------------------------~d~~l~~p~~R~l~lr~~~~~~---------~~iR~fl~~~gF 171 (658)
+|++++| ||||||++..++ ++||+||.++||
T Consensus 156 ~El~v~~i~vls~a~~~lP~~~~d~~~~~~~~~~~~~~dtrl~~---R~LdlR~~~~~~i~r~rs~i~~~~R~fl~~~gF 232 (550)
T PTZ00401 156 IELKVKKIHTVTESLRTLPFTLEDASRKESDEGAKVNFDTRLNS---RWMDLRTPASGAIFRLQSRVCQYFRQFLIDSDF 232 (550)
T ss_pred EEEEeeEEEEEeCCCCCCCCCcccccccccccccccChhhhhhh---hhhhhcCHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 1234444 999999876655 599999999999
Q ss_pred EEEcCCccccccCCCCccceeeccCCcceeeccCHHHHHHHhcc-cCCcEEEEeeeeecCCCCCccCcceeeeeeeEeec
Q psy8087 172 AKVTPPTLVQTQVEGGSTLFSLNFFGEPAYLTQSSQLYLETCLP-ALGDVYCIAQSYRAENSRTRRHLAEYTHVEAECAF 250 (658)
Q Consensus 172 ~EV~TPiL~~~~~eG~~~~F~~~~~~~~~~L~~Spqlylk~li~-g~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~a~ 250 (658)
+||+||+|+.+++|||+++|+++|||.++||+||||||||++++ |++||||||||||||+++|+|||||||||||||+|
T Consensus 233 iEV~TP~L~~~~~egga~~F~v~yf~~~~~L~qSpql~kq~li~~g~~rVfeI~p~FRaE~s~T~RHl~EFt~Le~E~~~ 312 (550)
T PTZ00401 233 CEIHSPKIINAPSEGGANVFKLEYFNRFAYLAQSPQLYKQMVLQGDVPRVFEVGPVFRSENSNTHRHLTEFVGLDVEMRI 312 (550)
T ss_pred EEEeCCccccCCCCccccccccccCCCCeecCCCHHHHHHHHHhcCCCCEEEEeCeEeCCCCCCCCCccchhhhhhhhHh
Confidence 99999999988899999999999999999999999999999997 69999999999999999999999999999999998
Q ss_pred C-CHHHHHHHHHHHHHHHHHHHhhccccc--cc------------------ccCCCCC---------------CCCCCcc
Q psy8087 251 L-TFDDLLDKLEDLICDTVDRVMATHGDL--VR------------------QMNPNFE---------------PPARPFL 294 (658)
Q Consensus 251 ~-d~~~~m~~~e~li~~i~~~~~~~~~~~--~~------------------~~~~~~~---------------~~~~pf~ 294 (658)
. +|+++|+++|+||.+++..+.+..... +. ..+.+.. ....||+
T Consensus 313 ~~~y~evm~~~e~l~~~i~~~l~~~~~ei~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~ 392 (550)
T PTZ00401 313 NEHYYEVLDLAESLFNYIFERLATHTKELKAVCQQYPFEPLVWKLTPERMKELGVGVISEGVEPTDKYQARVHNMDSRML 392 (550)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHccchhhhhhccccccccccccccHHHHHhcCCCcccccccchHHHHHHHHhcCCCcc
Confidence 6 799999999999999999887642210 00 0011110 0123699
Q ss_pred eeeHHHHHHHHHHcCCCCCCCCCcccCCCCCCchhhhhh----cccCCcEEEEe-CCCCCCCCCCccCCCCcCceeEEEE
Q psy8087 295 RMNYADAIEYLRKHEIRKPDNTEYEFGEDIPEMPERKMT----DQINRPIMLCR-FPADIKSFYMSKCPENPALTESVDV 369 (658)
Q Consensus 295 rit~~ea~~~l~~~g~~~~~~~~~~~g~~l~~~~e~~l~----~~~~~p~fi~~-~P~~~~pfy~~~~~~~~~~~~~fdL 369 (658)
||+|.||+++|++.|.. ...|++|++..+|++|+ +.++.|+||+| ||.+++|||+|++++||++++||||
T Consensus 393 rl~y~eai~lL~~~~~~-----~~~~~~dl~~~~E~~L~~~v~~~~~~~~fI~d~yP~~~rpFY~~~~~~dp~~s~~fDl 467 (550)
T PTZ00401 393 RINYMHCIELLNTVLEE-----KMAPTDDINTTNEKLLGKLVKERYGTDFFISDRFPSSARPFYTMECKDDERFTNSYDM 467 (550)
T ss_pred cccHHHHHHHHHHhccc-----CCCcccccCchHHHHHHHHHHHhcCCCEEEECCCChhhCchhcCcCCCCCCEEEEEEE
Confidence 99999999999987522 13567899999998775 55688999998 9999999999999999999999999
Q ss_pred EeCCcceeeeceeccCCHHHHHHHHHHcCCCCCCCcchHHHhhcCCCCccceecchhHHHHHHhcccCcchhhHHHHHh
Q psy8087 370 LFPNVGEVIGGSMRIWDPEELLAGYKREGIDPAPYYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRDKYQLIAKA 448 (658)
Q Consensus 370 ~~~G~~Ei~~G~~r~~d~~~~~~~~~~~g~~~~~~~~yl~a~~~G~pP~gG~GiGidRL~m~l~g~~~Irdvi~f~~k~ 448 (658)
|++| +||+|||+|+|||++|++|++++|+|++.++|||+|++||||||||||||||||+|+++|.+|||||++||..+
T Consensus 468 f~~G-~EI~sG~qR~~d~~~l~~r~~~~G~d~~~~~~Yl~a~~~G~PPhgG~GiGlERLvM~~lg~~nIR~v~lFPRdp 545 (550)
T PTZ00401 468 FIRG-EEISSGAQRIHDPDLLLARAKMLNVDLTPIKEYVDSFRLGAWPHGGFGVGLERVVMLYLGLSNVRLASLFPRDP 545 (550)
T ss_pred EeCC-EEEccchhhcCCHHHHHHHHHHcCCCchhhHHHHHHHHcCCCCCceEEEhHHHHHHHHhCCCcHheeecCCCCC
Confidence 9999 59999999999999999999999999999999999999999999999999999999999999999999998543
|
|
| >PTZ00417 lysine-tRNA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-87 Score=745.63 Aligned_cols=395 Identities=19% Similarity=0.278 Sum_probs=320.5
Q ss_pred cCCCCC-CCCccccccccccCC-----CccCCcEEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccc----hhhh
Q psy8087 45 LLPFPL-FPSPCEVGYITCEGP-----AGYIITNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILC----QTEH 114 (658)
Q Consensus 45 ~~~~~~-~~~~~~~~~~~~~~~-----~~~~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~----~~~~ 114 (658)
..|||. |+.++++.++.+... ....+..|+|+|||+++|++|++++|++|+|++|.||||++++.. ..|.
T Consensus 101 ~~pyp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Grv~~~R~~G~k~~F~~L~d~~g~iQv~~~~~~~~~~~~~~~ 180 (585)
T PTZ00417 101 INPYPHKFERTITVPEFVEKYQDLASGEHLEDTILNVTGRIMRVSASGQKLRFFDLVGDGAKIQVLANFAFHDHTKSNFA 180 (585)
T ss_pred CCCCCCCCcCCcCHHHHHHHhhccCccccccCCeEEEEEEEEeeecCCCCCEEEEEEeCCeeEEEEEECCccCCCHHHHH
Confidence 357876 777888888754321 111345699999999999999779999999999999999987532 2232
Q ss_pred --hhcCCCccEEEEEEEeEeCCCCcc--------------------------ceEecCCCceeEEeecCCccc-------
Q psy8087 115 --ALLLSTESSVQFRGRIEKVPEENM--------------------------KVQLIHPSSYAIVWLGDLKQG------- 159 (658)
Q Consensus 115 --~~~l~~es~V~v~G~l~~~p~~~~--------------------------d~~l~~p~~R~l~lr~~~~~~------- 159 (658)
...++.||+|.|+|.+..++.+.+ +++++ .||||||.+...+
T Consensus 181 ~~~~~l~~Gd~V~V~G~~~~t~~gel~i~~~~i~llsk~l~~lP~~~g~~d~e~r~r---~RyLdL~~n~~~~~ifr~RS 257 (585)
T PTZ00417 181 ECYDKIRRGDIVGIVGFPGKSKKGELSIFPKETIILSPCLHMLPMKYGLKDTEIRYR---QRYLDLMINESTRSTFITRT 257 (585)
T ss_pred HHHhcCCCCCEEEEEeEEcCCCCceEEEEEEEEEEEecCCCCCCcccCCCCcccccc---cchhhhhcCHHHHHHHHHHH
Confidence 246999999999999987765552 23333 4999999665433
Q ss_pred ---CchHHHhhhCCcEEEcCCccccccCCCC-cccee--eccCCcceeeccCHHHHHHHhcc-cCCcEEEEeeeeecCCC
Q psy8087 160 ---GYPPEVSLANGIAKVTPPTLVQTQVEGG-STLFS--LNFFGEPAYLTQSSQLYLETCLP-ALGDVYCIAQSYRAENS 232 (658)
Q Consensus 160 ---~~iR~fl~~~gF~EV~TPiL~~~~~eG~-~~~F~--~~~~~~~~~L~~Spqlylk~li~-g~~rvfeI~~~FR~E~~ 232 (658)
++||+||.++||+||+||+|++ .++|| +.||. +++++.++||+||||||||+|++ |++||||||||||||++
T Consensus 258 ~Ii~aiR~Ff~~rGFlEVeTPiL~~-~~GGA~a~PF~T~~n~~d~~lYLriSpEL~lKrLlvgG~~rVfeIgp~FRnE~~ 336 (585)
T PTZ00417 258 KIINYLRNFLNDRGFIEVETPTMNL-VAGGANARPFITHHNDLDLDLYLRIATELPLKMLIVGGIDKVYEIGKVFRNEGI 336 (585)
T ss_pred HHHHHHHHHHHHCCeEEEeCCeeec-cCCcccceeEEecccCCCcceEEeecHHHHHHHHHHhCCCCEEEEcccccCCCC
Confidence 6999999999999999999975 46555 45884 48999999999999999999987 79999999999999999
Q ss_pred CCccCcceeeeeeeEeecCCHHHHHHHHHHHHHHHHHHHhhcccccccccCC-----CCCCCCCCcceeeHHHHHHHH--
Q psy8087 233 RTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGDLVRQMNP-----NFEPPARPFLRMNYADAIEYL-- 305 (658)
Q Consensus 233 ~~~rHl~EFt~lE~e~a~~d~~~~m~~~e~li~~i~~~~~~~~~~~~~~~~~-----~~~~~~~pf~rit~~ea~~~l-- 305 (658)
++ ||||||||||||++|+||+|||+++|+||++++..+.+.....+...+. ++ .+..||+++||.||++.+
T Consensus 337 ~~-rHnpEFTmlE~y~ay~dy~dlM~l~E~Li~~v~~~v~g~~~~~~~~~g~~~~~~~i-~~~~pf~rit~~ea~~~~~g 414 (585)
T PTZ00417 337 DN-THNPEFTSCEFYWAYADFYDLIKWSEDFFSQLVMHLFGTYKILYNKDGPEKDPIEI-DFTPPYPKVSIVEELEKLTN 414 (585)
T ss_pred CC-CccceeeeeeeeeecCCHHHHHHHHHHHHHHHHHHhcCcceeeecccccccccccc-cCCCCceeccHHHHHHHHhC
Confidence 85 9999999999999999999999999999999999998765433322111 11 134799999999988743
Q ss_pred --------------------HHcCCCCCCCCCcccCCCCCCchhhhhhcccC-CcEEEEeCCCCCCCCCCccCCCCcCce
Q psy8087 306 --------------------RKHEIRKPDNTEYEFGEDIPEMPERKMTDQIN-RPIMLCRFPADIKSFYMSKCPENPALT 364 (658)
Q Consensus 306 --------------------~~~g~~~~~~~~~~~g~~l~~~~e~~l~~~~~-~p~fi~~~P~~~~pfy~~~~~~~~~~~ 364 (658)
++.|++.+. ..+|+..++.+++.++++.+. .|+||+|||.+++|| ++.+++||+++
T Consensus 415 ~~~~~~~~~~~~~~el~~~l~~~g~~~~~--~~~~~~~l~~l~e~~vE~~l~~~PtFI~dyP~~~sPL-ak~~~~dp~v~ 491 (585)
T PTZ00417 415 TKLEQPFDSPETINKMINLIKENKIEMPN--PPTAAKLLDQLASHFIENKYPNKPFFIIEHPQIMSPL-AKYHRSKPGLT 491 (585)
T ss_pred CCccccccccCCHHHHHHHHHHcCCCCCC--CCCHHHHHHHHHHHHHHHhhCCCcEEEECCChhhCch-hhhcCCCCCeE
Confidence 233333221 245677788889999999886 499999999999999 57888899999
Q ss_pred eEEEEEeCCcceeeeceeccCCHHHHHHHHHHc-----CCCCCCC---cchHHHhhcCCCCccceecchhHHHHHHhccc
Q psy8087 365 ESVDVLFPNVGEVIGGSMRIWDPEELLAGYKRE-----GIDPAPY---YWYTDQRKYGSTPHGGYGLGLERVLCWLLNQY 436 (658)
Q Consensus 365 ~~fdL~~~G~~Ei~~G~~r~~d~~~~~~~~~~~-----g~~~~~~---~~yl~a~~~G~pP~gG~GiGidRL~m~l~g~~ 436 (658)
+|||||++|+ ||+|||+|+|||.+|++||+.+ +.+++.+ ++||+|++||||||||||||||||+|+|||.+
T Consensus 492 eRFELfi~G~-EiangysELnDp~eQr~Rf~~q~~~r~~g~~e~~~~Dedfl~AleyGmPPtgG~GiGIDRLvMlltg~~ 570 (585)
T PTZ00417 492 ERLEMFICGK-EVLNAYTELNDPFKQKECFSAQQKDREKGDAEAFQFDAAFCTSLEYGLPPTGGLGLGIDRITMFLTNKN 570 (585)
T ss_pred EeEEeEECCE-EEccCcchhcCHHHHHHHHHHHHHHHHcCCCcccccHHHHHHHHHcCCCCCceEEEcHHHHHHHHcCCc
Confidence 9999999997 9999999999999999998754 2254543 45999999999999999999999999999999
Q ss_pred CcchhhHHHHHhhhhh
Q psy8087 437 HVRDKYQLIAKAQLKK 452 (658)
Q Consensus 437 ~Irdvi~f~~k~~lk~ 452 (658)
||||||+|| .+|+
T Consensus 571 sIrdVi~FP---~~r~ 583 (585)
T PTZ00417 571 CIKDVILFP---TMRP 583 (585)
T ss_pred chheeecCC---CCCC
Confidence 999999995 5553
|
|
| >PLN02850 aspartate-tRNA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-87 Score=743.25 Aligned_cols=370 Identities=28% Similarity=0.449 Sum_probs=320.8
Q ss_pred cCCcEEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccc---hh-h-hhhcCCCccEEEEEEEeEeCCC------C
Q psy8087 68 YIITNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILC---QT-E-HALLLSTESSVQFRGRIEKVPE------E 136 (658)
Q Consensus 68 ~~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~---~~-~-~~~~l~~es~V~v~G~l~~~p~------~ 136 (658)
..|++|+|+|||+++|.+|| ++|++|||+++.||+|+..+.. .. + +...|+.||+|.|+|.|...+. +
T Consensus 79 ~~g~~V~v~Grv~~~R~~gk-~~Fl~Lrd~~~~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~t~ 157 (530)
T PLN02850 79 LAGSEVLIRGRVHTIRGKGK-SAFLVLRQSGFTVQCVVFVSEVTVSKGMVKYAKQLSRESVVDVEGVVSVPKKPVKGTTQ 157 (530)
T ss_pred hCCCEEEEEEEEEEEccCCC-eEEEEEEeCCcCEEEEEECCccccCHHHHHHHhCCCCCCEEEEEEEEEccCcCCCCCCc
Confidence 67899999999999999997 8999999999999999976532 11 1 2457999999999999984221 1
Q ss_pred c----------------------------------------------cceEecCCCceeEEeecCCccc---------Cc
Q psy8087 137 N----------------------------------------------MKVQLIHPSSYAIVWLGDLKQG---------GY 161 (658)
Q Consensus 137 ~----------------------------------------------~d~~l~~p~~R~l~lr~~~~~~---------~~ 161 (658)
. ++++++| ||||||++..++ ++
T Consensus 158 ~~El~~~~i~vls~a~~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~rl~~---R~LdlR~~~~qaifrirs~i~~~ 234 (530)
T PLN02850 158 QVEIQVRKIYCVSKALATLPFNVEDAARSESEIEKALQTGEQLVRVGQDTRLNN---RVLDLRTPANQAIFRIQSQVCNL 234 (530)
T ss_pred cEEEEEeEEEEEeCCCCCCCCChhhcccccccccccccccccccccChhhhhcc---hhhhhcCHHHHHHHHHHHHHHHH
Confidence 1 1234444 999999876555 69
Q ss_pred hHHHhhhCCcEEEcCCccccccCCCCccceeeccCCcceeeccCHHHHHHHhcc-cCCcEEEEeeeeecCCCCCccCcce
Q psy8087 162 PPEVSLANGIAKVTPPTLVQTQVEGGSTLFSLNFFGEPAYLTQSSQLYLETCLP-ALGDVYCIAQSYRAENSRTRRHLAE 240 (658)
Q Consensus 162 iR~fl~~~gF~EV~TPiL~~~~~eG~~~~F~~~~~~~~~~L~~Spqlylk~li~-g~~rvfeI~~~FR~E~~~~~rHl~E 240 (658)
+|+||.++||+||+||+|+.+++|||+++|.++|||.++||+||||||||++++ |++||||||||||||+++|+|||||
T Consensus 235 ~R~fl~~~gF~EV~TP~L~~~~~egga~~F~v~yf~~~~~L~qSpql~kq~li~~g~~rVfeIgp~FRaE~s~t~RHl~E 314 (530)
T PLN02850 235 FREFLLSKGFVEIHTPKLIAGASEGGSAVFRLDYKGQPACLAQSPQLHKQMAICGDFRRVFEIGPVFRAEDSFTHRHLCE 314 (530)
T ss_pred HHHHHHHCCcEEEeCCccccCCCccccceeeeccCCcceecCCCHHHHHHHHHHhcCCceEEEecccccCCCCCCccchh
Confidence 999999999999999999989999999999999999999999999999999987 7999999999999999999999999
Q ss_pred eeeeeeEeecC-CHHHHHHHHHHHHHHHHHHHhhcccccccccCCC--CCC--CCCCcceeeHHHHHHHHHHcCCCCCCC
Q psy8087 241 YTHVEAECAFL-TFDDLLDKLEDLICDTVDRVMATHGDLVRQMNPN--FEP--PARPFLRMNYADAIEYLRKHEIRKPDN 315 (658)
Q Consensus 241 Ft~lE~e~a~~-d~~~~m~~~e~li~~i~~~~~~~~~~~~~~~~~~--~~~--~~~pf~rit~~ea~~~l~~~g~~~~~~ 315 (658)
||||||||+|. +|+|+|+++|+||++++..+.+.+...+..+... +.. ...+|+++||.||+++|++.|++.+
T Consensus 315 Ft~Le~Em~~~~~y~evm~~~E~ll~~i~~~l~~~~~~el~~i~~~~~~~~~~~~~~~~rit~~ea~~~L~~~g~~~~-- 392 (530)
T PLN02850 315 FTGLDLEMEIKEHYSEVLDVVDELFVAIFDGLNERCKKELEAIREQYPFEPLKYLPKTLRLTFAEGIQMLKEAGVEVD-- 392 (530)
T ss_pred hccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhcccCCcchhhhcCCcccCCHHHHHHHHHHcCCCCC--
Confidence 99999999998 6999999999999999999987764444333221 111 1237889999999999999886532
Q ss_pred CCcccCCCCCCchhhhhhc----ccCCc-EEEEeCCCCCCCCCCccCCCCcCceeEEEEEeCCcceeeeceeccCCHHHH
Q psy8087 316 TEYEFGEDIPEMPERKMTD----QINRP-IMLCRFPADIKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEEL 390 (658)
Q Consensus 316 ~~~~~g~~l~~~~e~~l~~----~~~~p-~fi~~~P~~~~pfy~~~~~~~~~~~~~fdL~~~G~~Ei~~G~~r~~d~~~~ 390 (658)
++.+++.++|+.++. .++.| +||+|||.+++|||++++++||++++|||||++| +||+|||+|+|||++|
T Consensus 393 ----~~~dl~~~~E~~Lg~~v~~~~~~~~~ii~~yP~~~~pfY~~~~~~d~~~~~~fDl~i~G-~EI~~G~qr~~d~~~l 467 (530)
T PLN02850 393 ----PLGDLNTESERKLGQLVKEKYGTDFYILHRYPLAVRPFYTMPCPDDPKYSNSFDVFIRG-EEIISGAQRVHDPELL 467 (530)
T ss_pred ----CCCCcchHHHHHHHHHHHHhcCCCeEEEECCccccCchhccccCCCCCeEEEEEEEeCC-EEEeccceecCCHHHH
Confidence 356888899988755 44454 6788999999999999999999999999999999 5999999999999999
Q ss_pred HHHHHHcCCCCCCCcchHHHhhcCCCCccceecchhHHHHHHhcccCcchhhHHHHHh
Q psy8087 391 LAGYKREGIDPAPYYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRDKYQLIAKA 448 (658)
Q Consensus 391 ~~~~~~~g~~~~~~~~yl~a~~~G~pP~gG~GiGidRL~m~l~g~~~Irdvi~f~~k~ 448 (658)
++|+++.|+|++.++|||++++||||||||||||||||+|+++|.+|||||++||..+
T Consensus 468 ~~r~~~~g~d~~~~~~Yl~a~~~G~pPhgG~GiGlERLvM~l~g~~nIr~v~~FPR~p 525 (530)
T PLN02850 468 EKRAEECGIDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLFPRDP 525 (530)
T ss_pred HHHHHHcCCChHHHHHHHHHHHcCCCCCceEEEcHHHHHHHHcCCCchheEeecCCCC
Confidence 9999999999999999999999999999999999999999999999999999998654
|
|
| >KOG1885|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-88 Score=705.69 Aligned_cols=403 Identities=17% Similarity=0.268 Sum_probs=335.7
Q ss_pred CcCCCCC-CCCccccccccccC-----CCccCCcEEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccc---hhhh
Q psy8087 44 SLLPFPL-FPSPCEVGYITCEG-----PAGYIITNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILC---QTEH 114 (658)
Q Consensus 44 ~~~~~~~-~~~~~~~~~~~~~~-----~~~~~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~---~~~~ 114 (658)
-..|||. |..++++.++.+-. ++......|+|+|||+++|.+|.+|+|++|++++.+||||++.+.. ..|.
T Consensus 72 ~~~Pyphkf~vs~si~~fieky~~l~~ge~~~n~~~svaGRI~s~R~sGsKL~Fydl~~~g~klQvm~~~~~~~~~~~F~ 151 (560)
T KOG1885|consen 72 GLNPYPHKFHVSISIPDFIEKYLHLATGEHLDNEIVSVAGRIHSKRESGSKLVFYDLHGDGVKLQVMANAKKITSEEDFE 151 (560)
T ss_pred CCCCCcchhhccccHHHHHHHhcCcccccccccceeeeeeeEeeeeccCCceEEEEEecCCeEEEEEEehhhcCCHHHHH
Confidence 3678988 77777777764311 2334456699999999999999999999999999999999998763 2342
Q ss_pred --hhcCCCccEEEEEEEeEeCCCCccceEec--------------------CC----CceeEEeecCCccc---------
Q psy8087 115 --ALLLSTESSVQFRGRIEKVPEENMKVQLI--------------------HP----SSYAIVWLGDLKQG--------- 159 (658)
Q Consensus 115 --~~~l~~es~V~v~G~l~~~p~~~~d~~l~--------------------~p----~~R~l~lr~~~~~~--------- 159 (658)
...|+.||+|.|+|.+.++..+++.+..+ +. ..||+||..|...+
T Consensus 152 ~~~~~lkrGDiig~~G~pgrt~~gELSi~~~~~~lLspcLh~lP~~~~gLkD~EtRyrqRylDlilN~~~r~~f~~RakI 231 (560)
T KOG1885|consen 152 QLHKFLKRGDIIGVSGYPGRTKSGELSIIPNEIILLSPCLHMLPHEHFGLKDKETRYRKRYLDLILNPEVRDRFRIRAKI 231 (560)
T ss_pred HHHhhhhccCEEeeecCCCcCCCceEEEeecchheecchhccCChhhcCCCcHHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 24699999999999998888776322211 11 14899998887443
Q ss_pred -CchHHHhhhCCcEEEcCCccccccCCCC-ccce--eeccCCcceeeccCHHHHHHHhcc-cCCcEEEEeeeeecCCCCC
Q psy8087 160 -GYPPEVSLANGIAKVTPPTLVQTQVEGG-STLF--SLNFFGEPAYLTQSSQLYLETCLP-ALGDVYCIAQSYRAENSRT 234 (658)
Q Consensus 160 -~~iR~fl~~~gF~EV~TPiL~~~~~eG~-~~~F--~~~~~~~~~~L~~Spqlylk~li~-g~~rvfeI~~~FR~E~~~~ 234 (658)
+.||.||+++||+|||||||. ..++|| |.|| ++|.+++++|||+|||||+|+|++ |++||||||+.|||||+|.
T Consensus 232 I~~iRkfld~rgFlEVETPmmn-~iaGGA~AkPFIT~hndldm~LylRiAPEL~lK~LvVGGldrVYEIGr~FRNEGIDl 310 (560)
T KOG1885|consen 232 ISYIRKFLDSRGFLEVETPMMN-MIAGGATAKPFITHHNDLDMDLYLRIAPELYLKMLVVGGLDRVYEIGRQFRNEGIDL 310 (560)
T ss_pred HHHHHHHhhhcCceEecchhhc-cccCccccCceeecccccCcceeeeechHHHHHHHHhccHHHHHHHHHHhhhcCccc
Confidence 699999999999999999995 667676 6799 778999999999999999999998 7999999999999999987
Q ss_pred ccCcceeeeeeeEeecCCHHHHHHHHHHHHHHHHHHHhhcccccccccCCCC----CCCCCCcceeeHHHHHHHHHHcCC
Q psy8087 235 RRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGDLVRQMNPNF----EPPARPFLRMNYADAIEYLRKHEI 310 (658)
Q Consensus 235 ~rHl~EFt~lE~e~a~~d~~~~m~~~e~li~~i~~~~~~~~~~~~~~~~~~~----~~~~~pf~rit~~ea~~~l~~~g~ 310 (658)
+||||||.||+||||+||+|||+++|+|++.+++.+.+++...+.-.+++. ..++.||+||+|.+.++. +.|+
T Consensus 311 -THNPEFTTcEfY~AYady~dlm~~TE~l~s~mv~~i~G~~~i~y~p~~~~~~~~eldf~~pfrri~mi~~L~k--~lgi 387 (560)
T KOG1885|consen 311 -THNPEFTTCEFYMAYADYEDLMDMTEELLSGMVKNITGSYKITYHPNGPEEPELELDFTRPFRRIEMIEELEK--ELGI 387 (560)
T ss_pred -ccCCCcchHHHHHHHhhHHHHHHHHHHHHHHHHHhhcCceeEeecCCCCCCCceeeeccCCeeeeeHHHHHHH--HhCC
Confidence 999999999999999999999999999999999999998765443322211 013579999999999985 5787
Q ss_pred CCCCCCCc------------------------ccCCCCCCchhhhhhcccCCcEEEEeCCCCCCCCCCccCCCCcCceeE
Q psy8087 311 RKPDNTEY------------------------EFGEDIPEMPERKMTDQINRPIMLCRFPADIKSFYMSKCPENPALTES 366 (658)
Q Consensus 311 ~~~~~~~~------------------------~~g~~l~~~~e~~l~~~~~~p~fi~~~P~~~~pfy~~~~~~~~~~~~~ 366 (658)
+.+..... .-+..|+++++.+|++++.+|+||.|+|..|||+ ||.|+..+++++|
T Consensus 388 ~l~~~~~l~~~e~~~~L~~~~~~~~v~~p~p~t~arlLdKLvg~flE~~cvnPTFi~~hP~imSPL-AK~hrs~~glteR 466 (560)
T KOG1885|consen 388 KLPPGSTLHTEETRELLKSLCVDEAVECPPPRTTARLLDKLVGEFLEPTCVNPTFIIDHPQIMSPL-AKYHRSKAGLTER 466 (560)
T ss_pred CCCCccccCchhhHHHHHHHHHhcccCCCCcccHHHHHHHHHhHhhccccCCCeeEcCCchhcCcc-ccccccccchhhH
Confidence 77642110 1123466788888999999999999999999998 9999999999999
Q ss_pred EEEEeCCcceeeeceeccCCHHHHHHHHHHc------CCCCCC--CcchHHHhhcCCCCccceecchhHHHHHHhcccCc
Q psy8087 367 VDVLFPNVGEVIGGSMRIWDPEELLAGYKRE------GIDPAP--YYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHV 438 (658)
Q Consensus 367 fdL~~~G~~Ei~~G~~r~~d~~~~~~~~~~~------g~~~~~--~~~yl~a~~~G~pP~gG~GiGidRL~m~l~g~~~I 438 (658)
||||++|. ||||+|+|+|||..|++||++| |.|+.+ +++|+.||+|||||+||||||||||+|+||+.+||
T Consensus 467 FElFi~~k-EicNAYtElNdP~~Qr~rFe~Q~~~k~~GDDEa~~~De~Fc~ALEYGlPPtgGwGmGIDRL~MllTds~~I 545 (560)
T KOG1885|consen 467 FELFIAGK-EICNAYTELNDPVDQRQRFEQQARDKDAGDDEAQMVDEDFCTALEYGLPPTGGWGMGIDRLVMLLTDSNNI 545 (560)
T ss_pred HHHhhhhH-HHhhhhhhhcCHHHHHHHHHHHHHHhhcCCcccccccHHHHHHHHcCCCCCCccccchhhhhhhhcCCcch
Confidence 99999996 9999999999999999999875 545433 68999999999999999999999999999999999
Q ss_pred chhhHHHHHhhhhhhhh
Q psy8087 439 RDKYQLIAKAQLKKVSK 455 (658)
Q Consensus 439 rdvi~f~~k~~lk~~~K 455 (658)
|||++| +.||+..+
T Consensus 546 ~EVL~F---p~mkp~~~ 559 (560)
T KOG1885|consen 546 REVLLF---PAMKPEDR 559 (560)
T ss_pred hheeec---cccChhcc
Confidence 999999 67776643
|
|
| >PRK02983 lysS lysyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-85 Score=776.57 Aligned_cols=388 Identities=19% Similarity=0.273 Sum_probs=323.8
Q ss_pred cCCCCC-CCCccccccccccCCCccCCcEEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccch--hh--hhhcCC
Q psy8087 45 LLPFPL-FPSPCEVGYITCEGPAGYIITNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILCQ--TE--HALLLS 119 (658)
Q Consensus 45 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~~--~~--~~~~l~ 119 (658)
.+|||. |+.+++++++.+. ..+++|+|+|||+++|.+|| ++|++|+|++|.||||++++... .+ ....++
T Consensus 629 ~~pyp~~~~~~~~~~~~~~~----~~~~~V~v~Grv~~~R~~G~-~~F~~lrD~~g~iQ~v~~~~~~~~~~~~~~~~~l~ 703 (1094)
T PRK02983 629 VDPYPVGVPPTHTVAEALDA----PTGEEVSVSGRVLRIRDYGG-VLFADLRDWSGELQVLLDASRLEQGSLADFRAAVD 703 (1094)
T ss_pred CCCCCCCCcCccCHHHHHHh----cCCCEEEEEEEEEEEeeCCC-eEEEEEEeCCeeEEEEEECCccchhhHHHHHhcCC
Confidence 468987 7888888888553 56788999999999999995 99999999999999999876532 12 124689
Q ss_pred CccEEEEEEEeEeCCCCccc---------------------------eEecCCCceeEEeecCCccc----------Cch
Q psy8087 120 TESSVQFRGRIEKVPEENMK---------------------------VQLIHPSSYAIVWLGDLKQG----------GYP 162 (658)
Q Consensus 120 ~es~V~v~G~l~~~p~~~~d---------------------------~~l~~p~~R~l~lr~~~~~~----------~~i 162 (658)
.||+|.|+|.+.+++.+.++ ++++ +||||||++...+ ++|
T Consensus 704 ~gd~V~v~G~v~~t~~ge~ei~~~~i~ll~k~~~plP~k~~~~~d~e~R~r---~R~lDL~~n~~~~~~~r~Rs~i~~~i 780 (1094)
T PRK02983 704 LGDLVEVTGTMGTSRNGTLSLLVTSWRLAGKCLRPLPDKWKGLTDPEARVR---QRYLDLAVNPEARDLLRARSAVVRAV 780 (1094)
T ss_pred CCCEEEEEEEEEEcCCCCEEEEEeEEEEEeccCcCCCCccccCCChhhcch---hhhhhhhcCHHHHHHHHHHHHHHHHH
Confidence 99999999999988876632 3333 4999998765433 699
Q ss_pred HHHhhhCCcEEEcCCccccccCCCCccce--eeccCCcceeeccCHHHHHHHhcc-cCCcEEEEeeeeecCCCCCccCcc
Q psy8087 163 PEVSLANGIAKVTPPTLVQTQVEGGSTLF--SLNFFGEPAYLTQSSQLYLETCLP-ALGDVYCIAQSYRAENSRTRRHLA 239 (658)
Q Consensus 163 R~fl~~~gF~EV~TPiL~~~~~eG~~~~F--~~~~~~~~~~L~~Spqlylk~li~-g~~rvfeI~~~FR~E~~~~~rHl~ 239 (658)
|+||.++||+||+||+|++..++++++|| ++|||++++||+||||||||+|++ |++||||||||||||++++ ||||
T Consensus 781 R~fl~~~gFlEVeTPiL~~~~gGa~a~pF~t~~~~~~~~~yLriSPELylKrLivgG~erVFEIg~~FRnE~~~~-rHnp 859 (1094)
T PRK02983 781 RETLVARGFLEVETPILQQVHGGANARPFVTHINAYDMDLYLRIAPELYLKRLCVGGVERVFELGRNFRNEGVDA-THNP 859 (1094)
T ss_pred HHHHHHCCCEEEeCCEeeccCCCcccceeEeeecCCCccchhhcChHHHHHHHHhcccCceEEEcceecCCCCCC-Cccc
Confidence 99999999999999999755443346899 779999999999999999999987 8999999999999999986 9999
Q ss_pred eeeeeeeEeecCCHHHHHHHHHHHHHHHHHHHhhccccccccc-----CCCCCCCCCCcceeeHHHHHHHHHHcCCCCCC
Q psy8087 240 EYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGDLVRQM-----NPNFEPPARPFLRMNYADAIEYLRKHEIRKPD 314 (658)
Q Consensus 240 EFt~lE~e~a~~d~~~~m~~~e~li~~i~~~~~~~~~~~~~~~-----~~~~~~~~~pf~rit~~ea~~~l~~~g~~~~~ 314 (658)
||||||+||+|+||+|||+++|+||+++++.+.++........ .++ ++.||+|+||.||++.+ .|++...
T Consensus 860 EFTmLE~y~a~~dy~d~m~l~E~li~~i~~~v~~~~~~~~~~~~~~~~~i~---~~~pf~rit~~eai~~~--~g~~~~~ 934 (1094)
T PRK02983 860 EFTLLEAYQAHADYDTMRDLTRELIQNAAQAAHGAPVVMRPDGDGVLEPVD---ISGPWPVVTVHDAVSEA--LGEEIDP 934 (1094)
T ss_pred cccchhhhhhcCCHHHHHHHHHHHHHHHHHHHhCCcEEeeCCccccccccc---cCCCceEEEHHHHHHHH--hCCCCCC
Confidence 9999999999999999999999999999999986543211111 122 35799999999999853 3432211
Q ss_pred ------------------CCCcccCCCCCCchhhhhhcccCCcEEEEeCCCCCCCCCCccCCCCcCceeEEEEEeCCcce
Q psy8087 315 ------------------NTEYEFGEDIPEMPERKMTDQINRPIMLCRFPADIKSFYMSKCPENPALTESVDVLFPNVGE 376 (658)
Q Consensus 315 ------------------~~~~~~g~~l~~~~e~~l~~~~~~p~fi~~~P~~~~pfy~~~~~~~~~~~~~fdL~~~G~~E 376 (658)
...+.+|+.+++.+++++++++.+|+||+|||.+++||| |.+++||++++|||||++|+ |
T Consensus 935 ~~~~~~l~~~~~~~~i~~~~~~~~~~l~~~l~~~~ve~~~~~P~Fv~dyP~~~spla-~~~~~~p~~~erFdL~i~G~-E 1012 (1094)
T PRK02983 935 DTPLAELRKLCDAAGIPYRTDWDAGAVVLELYEHLVEDRTTFPTFYTDFPTSVSPLT-RPHRSDPGLAERWDLVAWGV-E 1012 (1094)
T ss_pred CCCHHHHHHHHHHcCCCCCCCCCHhHHHHHHHHHHHHhhcCCCEEEECCCccccccc-ccCCCCCCeeEEEEEEECCE-E
Confidence 012334556677889999999999999999999999995 67889999999999999998 9
Q ss_pred eeeceeccCCHHHHHHHHHHc-----CCCCCCC---cchHHHhhcCCCCccceecchhHHHHHHhcccCcchhhHHHHHh
Q psy8087 377 VIGGSMRIWDPEELLAGYKRE-----GIDPAPY---YWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRDKYQLIAKA 448 (658)
Q Consensus 377 i~~G~~r~~d~~~~~~~~~~~-----g~~~~~~---~~yl~a~~~G~pP~gG~GiGidRL~m~l~g~~~Irdvi~f~~k~ 448 (658)
|+|||+|+|||.+|++||+++ +.|++.+ +|||+|++||||||||||||||||+|+|||. ||||||+||
T Consensus 1013 i~ng~~El~Dp~eq~~r~~~q~~~~~~~d~e~~~~De~yl~al~yGmPP~gG~GiGiDRLvM~ltg~-sIRdvi~FP--- 1088 (1094)
T PRK02983 1013 LGTAYSELTDPVEQRRRLTEQSLLAAGGDPEAMELDEDFLQALEYAMPPTGGLGMGVDRLVMLLTGR-SIRETLPFP--- 1088 (1094)
T ss_pred EeccccccCCHHHHHHHHHHHHHHHhCCChhhccccHHHHHHHHcCCCCCCeEEeeHHHHHHHHhCC-ChheEecCC---
Confidence 999999999999999999864 5577654 6999999999999999999999999999996 999999995
Q ss_pred hhhh
Q psy8087 449 QLKK 452 (658)
Q Consensus 449 ~lk~ 452 (658)
.+|+
T Consensus 1089 ~~k~ 1092 (1094)
T PRK02983 1089 LVKP 1092 (1094)
T ss_pred cCCC
Confidence 4554
|
|
| >KOG0555|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-83 Score=657.84 Aligned_cols=377 Identities=62% Similarity=1.048 Sum_probs=361.7
Q ss_pred ccCCcEEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccchhhhhhcCCCccEEEEEEEeEeCCCCc---------
Q psy8087 67 GYIITNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEEN--------- 137 (658)
Q Consensus 67 ~~~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~~~~~~~~l~~es~V~v~G~l~~~p~~~--------- 137 (658)
+..|+.|.|.|||+++|+. |+++|++|||++|.+|||++++.+..++...|+.||+|.|.|+++.+|+|+
T Consensus 120 ~~r~qrVkv~gWVhrlR~q-k~l~FivLrdg~gflqCVl~~kl~~~yd~~~Ls~essv~vYG~i~~~p~GK~apgghEl~ 198 (545)
T KOG0555|consen 120 ENRGQRVKVFGWVHRLRRQ-KSLIFIVLRDGTGFLQCVLSDKLCQSYDALTLSTESSVTVYGTIKKLPEGKSAPGGHELN 198 (545)
T ss_pred cccCceEEeehhhHhhhhc-CceEEEEEecCCceEEEEEcchhhhhhccccccccceEEEEEEEecCcCCCCCCCCceEE
Confidence 4678999999999999998 789999999999999999999988888888999999999999999999765
Q ss_pred ------------------------cceEecCCCceeEEeecCCccc---------CchHHHhhhCCcEEEcCCccccccC
Q psy8087 138 ------------------------MKVQLIHPSSYAIVWLGDLKQG---------GYPPEVSLANGIAKVTPPTLVQTQV 184 (658)
Q Consensus 138 ------------------------~d~~l~~p~~R~l~lr~~~~~~---------~~iR~fl~~~gF~EV~TPiL~~~~~ 184 (658)
+++.|+| |||-+|..+.++ +++|+++.+.|+.||.+|.|+|...
T Consensus 199 vdy~Eiig~Apag~~~n~lne~s~~~~~Ldn---rHl~iRge~~s~vLK~Ra~~lr~~Rd~y~~~~ytEVtPPtmVQTQV 275 (545)
T KOG0555|consen 199 VDYWEIIGLAPAGGFDNPLNEESDVDVLLDN---RHLVIRGENASKVLKARAALLRAMRDHYFERGYTEVTPPTMVQTQV 275 (545)
T ss_pred eeeeeeecccCCCcccccccccCCcceEecc---ceeEEechhHHHHHHHHHHHHHHHHHHHHhcCceecCCCceEEEEe
Confidence 4666777 999999988766 6999999999999999999999999
Q ss_pred CCCccceeeccCCcceeeccCHHHHHHHhcccCCcEEEEeeeeecCCCCCccCcceeeeeeeEeecCCHHHHHHHHHHHH
Q psy8087 185 EGGSTLFSLNFFGEPAYLTQSSQLYLETCLPALGDVYCIAQSYRAENSRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLI 264 (658)
Q Consensus 185 eG~~~~F~~~~~~~~~~L~~Spqlylk~li~g~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~a~~d~~~~m~~~e~li 264 (658)
|||+..|+++|||.++||+||.||||+.++.++++||+|.++||+|.++|+||+.|||++|+|++|.+++++|+.+|+|+
T Consensus 276 EGGsTLFkldYyGEeAyLTQSSQLYLEtclpAlgdvy~I~~SyRAEkSrTRRHLsEytHVEaE~afltfd~ll~~iE~lv 355 (545)
T KOG0555|consen 276 EGGSTLFKLDYYGEEAYLTQSSQLYLETCLPALGDVYCIQQSYRAEKSRTRRHLSEYTHVEAECAFLTFDDLLDRIEALV 355 (545)
T ss_pred cCcceEEeecccCchhhccchhHHHHHHhhhhcCceeEecHhhhhhhhhhhhhhhhheeeeeecccccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcccc-cccccCCCCCCCCCCcceeeHHHHHHHHHHcCCCCCCCCCcccCCCCCCchhhhhhcccCCcEEEE
Q psy8087 265 CDTVDRVMATHGD-LVRQMNPNFEPPARPFLRMNYADAIEYLRKHEIRKPDNTEYEFGEDIPEMPERKMTDQINRPIMLC 343 (658)
Q Consensus 265 ~~i~~~~~~~~~~-~~~~~~~~~~~~~~pf~rit~~ea~~~l~~~g~~~~~~~~~~~g~~l~~~~e~~l~~~~~~p~fi~ 343 (658)
.+.+..+.+.+.. .+..++++|..++.||.||.|.|||+.|+++++.++++..+.+|+|+.+..||++.+.++.|+|++
T Consensus 356 c~~vdr~l~dp~~~li~~lnP~f~~P~~PFkRm~Y~dAI~wLke~~vk~edg~~fefGdDI~eAaER~mtdtIg~PIfLt 435 (545)
T KOG0555|consen 356 CDSVDRLLEDPIAPLIKQLNPDFKAPKRPFKRMNYSDAIEWLKEHDVKKEDGTDFEFGDDIPEAAERKMTDTIGVPIFLT 435 (545)
T ss_pred HHHHHHHHhChhhhhHHHhCCCCCCCCCchhcCCHHHHHHHHHhcCCcCccCcccccccchhhHHHHhhhhhcCCceEEe
Confidence 9999999988754 678899999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCCCCccCCCCcCceeEEEEEeCCcceeeeceeccCCHHHHHHHHHHcCCCCCCCcchHHHhhcCCCCccceec
Q psy8087 344 RFPADIKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGIDPAPYYWYTDQRKYGSTPHGGYGL 423 (658)
Q Consensus 344 ~~P~~~~pfy~~~~~~~~~~~~~fdL~~~G~~Ei~~G~~r~~d~~~~~~~~~~~g~~~~~~~~yl~a~~~G~pP~gG~Gi 423 (658)
.||.++++|||+++.+|++++++.|+++||+|||+|||+|+.|.+++.+.|+..|+|+.+|.||++.++||..||||+||
T Consensus 436 rFpveiKsFYM~rc~dd~~lTESvD~LmPnVGEIvGGSMRi~d~eeLlagfkRegId~~pYYWy~DqrkyGt~pHGGyGL 515 (545)
T KOG0555|consen 436 RFPVEIKSFYMKRCEDDPRLTESVDVLMPNVGEIVGGSMRIDDSEELLAGFKREGIDPDPYYWYTDQRKYGTCPHGGYGL 515 (545)
T ss_pred eccccccceeeecccCccccceeeeeecCCccccccceeeeccHHHHHHHHhhcCCCCCCceEEeeccccccCCCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHhcccCcchhhHHHHH
Q psy8087 424 GLERVLCWLLNQYHVRDKYQLIAK 447 (658)
Q Consensus 424 GidRL~m~l~g~~~Irdvi~f~~k 447 (658)
|+||++|||++..+||||.+||..
T Consensus 516 GlERfL~wL~~r~~vre~cLyPRf 539 (545)
T KOG0555|consen 516 GLERFLAWLCDRYHVREVCLYPRF 539 (545)
T ss_pred cHHHHHHHHhcccchhheeecchh
Confidence 999999999999999999999865
|
|
| >TIGR00459 aspS_bact aspartyl-tRNA synthetase, bacterial type | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-83 Score=716.05 Aligned_cols=374 Identities=25% Similarity=0.377 Sum_probs=302.9
Q ss_pred cccccccccCCCccCCcEEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccchhh-hhhcCCCccEEEEEEEeEeC
Q psy8087 55 CEVGYITCEGPAGYIITNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILCQTE-HALLLSTESSVQFRGRIEKV 133 (658)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~~~~-~~~~l~~es~V~v~G~l~~~ 133 (658)
+.++++.. ..+|++|+|+|||+++|.+|| ++|++|||++|.||||++++ ...+ ....|+.||+|.|+|.|..+
T Consensus 4 ~~~~~l~~----~~~g~~V~l~GwV~~~R~~Gk-l~Fi~LrD~sg~iQvv~~~~-~~~~~~~~~L~~esvV~V~G~v~~r 77 (583)
T TIGR00459 4 HYCGQLRT----EHLGQTVTLAGWVNRRRDLGG-LIFIDLRDRSGIVQVVCDPD-ADALKLAKGLRNEDVVQVKGKVSAR 77 (583)
T ss_pred eeHhhcch----hhCCCEEEEEEEEEEEEcCCC-cEEEEEEeCCccEEEEEeCC-HHHHHHHhcCCCCCEEEEEEEEEeC
Confidence 34556643 367899999999999999986 99999999999999999865 2222 23579999999999999875
Q ss_pred C---------CCccc---------------------------eEecCCCceeEEeecCCccc---------CchHHHhhh
Q psy8087 134 P---------EENMK---------------------------VQLIHPSSYAIVWLGDLKQG---------GYPPEVSLA 168 (658)
Q Consensus 134 p---------~~~~d---------------------------~~l~~p~~R~l~lr~~~~~~---------~~iR~fl~~ 168 (658)
| .+.+| +|++ +||||||++..++ ++||+||.+
T Consensus 78 ~~~~~n~~~~tg~iEl~~~~i~iL~~a~~~P~~~~~~~~~~~~Rl~---~RyLDLR~~~~~~~lr~Rs~i~~~iR~ff~~ 154 (583)
T TIGR00459 78 PEGNINRNLDTGEIEILAESITLLNKSKTPPLIIEKTDAEEEVRLK---YRYLDLRRPEMQQRLKLRHKVTKAVRNFLDQ 154 (583)
T ss_pred CccccCccCCCCcEEEEEeEEEEeecCCCCCCcccccccchhhhcc---cceEEcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 22222 2233 5999999876554 699999999
Q ss_pred CCcEEEcCCccccccCCCCccce-eeccCCc-ceeeccCHHHHHHHhcc-cCCcEEEEeeeeecCCCCCccCcceeeeee
Q psy8087 169 NGIAKVTPPTLVQTQVEGGSTLF-SLNFFGE-PAYLTQSSQLYLETCLP-ALGDVYCIAQSYRAENSRTRRHLAEYTHVE 245 (658)
Q Consensus 169 ~gF~EV~TPiL~~~~~eG~~~~F-~~~~~~~-~~~L~~Spqlylk~li~-g~~rvfeI~~~FR~E~~~~~rHl~EFt~lE 245 (658)
+||+||+||+|+++++|||++.+ +.++++. .+||+||||||||+||+ |++||||||||||||+++++|| |||||||
T Consensus 155 ~gFiEVeTP~L~~s~~eGar~f~vp~~~~~~~~y~L~qSpQlykq~l~v~G~ervfqI~~~FR~E~~~t~r~-pEFT~le 233 (583)
T TIGR00459 155 QGFLEIETPMLTKSTPEGARDYLVPSRVHKGEFYALPQSPQLFKQLLMVSGVDRYYQIARCFRDEDLRADRQ-PEFTQID 233 (583)
T ss_pred CCCEEEECCeeccCCCCCCcceeeeeecCCCceeecCCCHHHHHHHHHhcccCcEEEEcceeeCCCCCCCCC-cccCcce
Confidence 99999999999988998886532 4444444 45699999999999887 7999999999999999999777 9999999
Q ss_pred eEeecCCHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCCCcceeeHHHHHHHHHHcCCCCCCCCC--------
Q psy8087 246 AECAFLTFDDLLDKLEDLICDTVDRVMATHGDLVRQMNPNFEPPARPFLRMNYADAIEYLRKHEIRKPDNTE-------- 317 (658)
Q Consensus 246 ~e~a~~d~~~~m~~~e~li~~i~~~~~~~~~~~~~~~~~~~~~~~~pf~rit~~ea~~~l~~~g~~~~~~~~-------- 317 (658)
+||+|+|++|+|+++|+||+++++.+.+ ++ ++.||+||||.||++. +|.|+||.+.
T Consensus 234 ~E~af~d~~dvm~~~E~li~~v~~~v~~----------~~---~~~pf~r~ty~ea~~~---yGsDkPDlR~~~~~~d~~ 297 (583)
T TIGR00459 234 MEMSFMTQEDVMELIEKLVSHVFLEVKG----------ID---LKKPFPVMTYAEAMER---YGSDKPDLRFPLELIDVT 297 (583)
T ss_pred eeecCCCHHHHHHHHHHHHHHHHHHHhC----------CC---CCCCceEEEHHHHHHH---HCCCCCccccCcccccHH
Confidence 9999999999999999999999998864 22 2479999999999986 6888886421
Q ss_pred --------------------------------cc-------------cCCC------CCC--c--------hh-------
Q psy8087 318 --------------------------------YE-------------FGED------IPE--M--------PE------- 329 (658)
Q Consensus 318 --------------------------------~~-------------~g~~------l~~--~--------~e------- 329 (658)
++ .|.. +.. . .+
T Consensus 298 ~~~~~~~f~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~ 377 (583)
T TIGR00459 298 DLFKDSEFKVFSNLINDGGRVKAIRVPGGWAELSRKSIKELRKFAKEYGAKGLAYLKVNEDGINSPIKKFLDEKKGKILL 377 (583)
T ss_pred HhhccCCcchhhhhhccCCeEEEEEecCCcCccCHhHHHHHHHHHHHcCCCcceEEEEcCCcCCCchhhhcCHHHHHHHH
Confidence 00 0000 000 0 00
Q ss_pred ------------------------------------hhhhcccCCcEEEEeCCCC-----------CCCCCCccCCCCcC
Q psy8087 330 ------------------------------------RKMTDQINRPIMLCRFPAD-----------IKSFYMSKCPENPA 362 (658)
Q Consensus 330 ------------------------------------~~l~~~~~~p~fi~~~P~~-----------~~pfy~~~~~~~~~ 362 (658)
.++++...+|+||+|||.. ++|| ++++++|+.
T Consensus 378 ~~~~~~~gd~~~~~a~~~~~~~~~lG~lr~~l~~~~~l~~~~~~~~~wV~dfPlfe~~~~~~~~a~hhPf-T~p~~~d~~ 456 (583)
T TIGR00459 378 ERTDAQNGDILLFGAGSKKIVLDALGALRLKLGKDLGLVDPDLFSFLWVVDFPMFEKDKEGRLCAAHHPF-TMPKDEDLE 456 (583)
T ss_pred HHhCCCCCCEEEEecCcchhHHHHHHHHHHHHHHHcCCcCCCCceEEEEEeCCCccccCCCceeeeECCC-CCCCCCChh
Confidence 0112223469999999996 9999 567777776
Q ss_pred ---------ceeEEEEEeCCcceeeeceeccCCHHHHHHHHHHcCCCCC----CCcchHHHhhcCCCCccceecchhHHH
Q psy8087 363 ---------LTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGIDPA----PYYWYTDQRKYGSTPHGGYGLGLERVL 429 (658)
Q Consensus 363 ---------~~~~fdL~~~G~~Ei~~G~~r~~d~~~~~~~~~~~g~~~~----~~~~yl~a~~~G~pP~gG~GiGidRL~ 429 (658)
.+++|||++||+ ||+|||.|+|||+.|+++|+..|++++ .|++||+||+||||||||+|||||||+
T Consensus 457 ~l~~~p~~~~~~~yDLvlnG~-ElggGs~rihd~~~Q~~~f~~l~~~~ee~~~~f~~ll~Al~yG~PPhgG~alG~DRlv 535 (583)
T TIGR00459 457 NLEAAPEEALAEAYDLVLNGV-ELGGGSIRIHDPEVQKKVFEILGIDPEEAREKFGFLLEAFKYGTPPHAGFALGLDRLM 535 (583)
T ss_pred hhhcChhhhhhheeeEEEece-EecceeEEeCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCCcCceeccHHHHH
Confidence 899999999998 999999999999999999998898765 389999999999999999999999999
Q ss_pred HHHhcccCcchhhHHHHHhhhhhhhhh
Q psy8087 430 CWLLNQYHVRDKYQLIAKAQLKKVSKL 456 (658)
Q Consensus 430 m~l~g~~~Irdvi~f~~k~~lk~~~K~ 456 (658)
|+|||.+||||||+||....-.+.+-.
T Consensus 536 mlLt~~~sIRDVIaFPKt~~g~dlm~~ 562 (583)
T TIGR00459 536 MLLTGTDNIRDVIAFPKTTAAACLMTE 562 (583)
T ss_pred HHHcCCCchhheeecCCCCCCcccccC
Confidence 999999999999999977665554443
|
In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_bact, represents aspartyl-tRNA synthetases from the Bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). This model generates very low scores for the archaeal type of aspS and for asnS; scores between the trusted and noise cutoffs represent fragmentary sequences. |
| >COG0173 AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-82 Score=683.61 Aligned_cols=372 Identities=26% Similarity=0.389 Sum_probs=307.5
Q ss_pred ccccccccccCCCccCCcEEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccc-hhhh-hhcCCCccEEEEEEEeE
Q psy8087 54 PCEVGYITCEGPAGYIITNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILC-QTEH-ALLLSTESSVQFRGRIE 131 (658)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~-~~~~-~~~l~~es~V~v~G~l~ 131 (658)
++.++++... .+|++|+|+|||+++|++|+ |+|++|||.+|.+|||++.+.. +.+. +..++.|++|.|+|+|.
T Consensus 3 t~~cg~l~~~----~vG~~V~L~GWV~r~Rd~Gg-liFiDLRDr~GivQvv~~~~~~~~~~~~a~~lr~E~vi~V~G~V~ 77 (585)
T COG0173 3 THYCGELRES----HVGQTVTLSGWVHRRRDHGG-LIFIDLRDREGIVQVVFDPEDSPEAFEVASRLRNEFVIQVTGTVR 77 (585)
T ss_pred ceeccccCHH----HCCCEEEEEeeeeeccccCC-eEEEEcccCCCeEEEEECCccCHHHHHHHHhcCceEEEEEEEEEE
Confidence 4556777543 78999999999999999996 9999999999999999998533 3343 45799999999999999
Q ss_pred eCCCCc---------cc----------------------------eEecCCCceeEEeecCCccc---------CchHHH
Q psy8087 132 KVPEEN---------MK----------------------------VQLIHPSSYAIVWLGDLKQG---------GYPPEV 165 (658)
Q Consensus 132 ~~p~~~---------~d----------------------------~~l~~p~~R~l~lr~~~~~~---------~~iR~f 165 (658)
..|++. +| +|| ++||||||++.++. +++|+|
T Consensus 78 ~R~e~~~N~~l~TGeiEv~a~~i~vln~s~~lPf~i~d~~~~~Ee~RL---kYRyLDLRR~~m~~~l~lR~kv~~~iR~~ 154 (585)
T COG0173 78 ARPEGTINPNLPTGEIEVLAEEIEVLNASKTLPFQIEDETNASEEIRL---KYRYLDLRRPEMQKNLKLRSKVTKAIRNF 154 (585)
T ss_pred ecCccccCCCCCcceEEEEeeeEEEEecCCCCCcCCCCCCCcchhhhh---hhhhhhhcCHHHHHHHHHHHHHHHHHHHH
Confidence 887642 22 223 35999999987765 599999
Q ss_pred hhhCCcEEEcCCccccccCCCCccce--eeccCCcceeeccCHHHHHHHhcc-cCCcEEEEeeeeecCCCCCccCcceee
Q psy8087 166 SLANGIAKVTPPTLVQTQVEGGSTLF--SLNFFGEPAYLTQSSQLYLETCLP-ALGDVYCIAQSYRAENSRTRRHLAEYT 242 (658)
Q Consensus 166 l~~~gF~EV~TPiL~~~~~eG~~~~F--~~~~~~~~~~L~~Spqlylk~li~-g~~rvfeI~~~FR~E~~~~~rHl~EFt 242 (658)
|.++||+||+||+|+++++|||.+.. +-.+.|++|.|+||||||||.||+ ||+|||||++|||+|+.+++|+ ||||
T Consensus 155 ld~~gF~EiETPiLtkSTPEGARDfLVPSRv~~G~FYALPQSPQlfKQLLMvsGfdRYyQIarCFRDEDlRaDRQ-PEFT 233 (585)
T COG0173 155 LDDQGFLEIETPILTKSTPEGARDFLVPSRVHPGKFYALPQSPQLFKQLLMVAGFDRYYQIARCFRDEDLRADRQ-PEFT 233 (585)
T ss_pred HhhcCCeEeecCccccCCCccccccccccccCCCceeecCCCHHHHHHHHHHhcccceeeeeeeecccccccccC-Ccce
Confidence 99999999999999999999988744 334678999999999999999998 8999999999999999999999 9999
Q ss_pred eeeeEeecCCHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCCCcceeeHHHHHHHHHHcCCCCCCCCCc----
Q psy8087 243 HVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGDLVRQMNPNFEPPARPFLRMNYADAIEYLRKHEIRKPDNTEY---- 318 (658)
Q Consensus 243 ~lE~e~a~~d~~~~m~~~e~li~~i~~~~~~~~~~~~~~~~~~~~~~~~pf~rit~~ea~~~l~~~g~~~~~~~~~---- 318 (658)
|||+||+|.|-+|+|+++|+|+.++++.+.+- + ++.||+||||.|||.. +|+|+||++..
T Consensus 234 QiD~EmSF~~~edv~~~~E~l~~~vf~~~~~i----------~---l~~pFprmtY~eAm~~---YGSDKPDlRf~lel~ 297 (585)
T COG0173 234 QIDLEMSFVDEEDVMELIEKLLRYVFKEVKGI----------E---LKTPFPRMTYAEAMRR---YGSDKPDLRFPLELI 297 (585)
T ss_pred eEeEEeecCCHHHHHHHHHHHHHHHHHHhcCC----------c---cCCCcccccHHHHHHH---hCCCCCcccCCceeh
Confidence 99999999999999999999999999987642 2 3469999999999986 79999987520
Q ss_pred ---------cc--------------------CCC------------------------------CCC--------c-hhh
Q psy8087 319 ---------EF--------------------GED------------------------------IPE--------M-PER 330 (658)
Q Consensus 319 ---------~~--------------------g~~------------------------------l~~--------~-~e~ 330 (658)
++ |.. +.. . .+.
T Consensus 298 dvt~~~~~~~F~vF~~~~~~~~~v~ai~vp~~~~~sRk~id~~~~~ak~~gakGLa~ikv~~~~~~gpi~kfl~e~~~~~ 377 (585)
T COG0173 298 DVTDLFKDSEFKVFSNALANGGRVKAIVVPGGASLSRKQIDELTEFAKIYGAKGLAYIKVEEDGLKGPIAKFLSEEILEE 377 (585)
T ss_pred hHHHHhcCCCcceehhhhhcCCeEEEEEcCCccccCHHHHHHHHHHHHHcCCCceEEEEEecCCccchHHHhcCHHHHHH
Confidence 00 000 000 0 000
Q ss_pred --------------------------------hhhccc-------CCcEEEEeCCC------------CCCCCCCccCCC
Q psy8087 331 --------------------------------KMTDQI-------NRPIMLCRFPA------------DIKSFYMSKCPE 359 (658)
Q Consensus 331 --------------------------------~l~~~~-------~~p~fi~~~P~------------~~~pfy~~~~~~ 359 (658)
.+.+.+ -.++||+|||. .|+||+|+ ++.
T Consensus 378 l~~~~~~~~gD~iff~A~~~~~~~~~lGalR~~l~~~l~li~~~~~~f~WVvDFPlfE~~ee~~~~~a~HHPFT~P-~~~ 456 (585)
T COG0173 378 LIERLGAEDGDIIFFVADKKKVVNKALGALRLKLGKELGLIDKDQFKFLWVVDFPLFEWDEEEGRYVAAHHPFTMP-KPE 456 (585)
T ss_pred HHHHhCCCCCCEEEEecCcHHHHHHHHHHHHHHHHHHhCCCCcccceEEEEEecCccCCccccCceecccCCCCCC-Ccc
Confidence 011111 25899999995 68999654 433
Q ss_pred C-------c--CceeEEEEEeCCcceeeeceeccCCHHHHHHHHHHcCCCCC----CCcchHHHhhcCCCCccceecchh
Q psy8087 360 N-------P--ALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGIDPA----PYYWYTDQRKYGSTPHGGYGLGLE 426 (658)
Q Consensus 360 ~-------~--~~~~~fdL~~~G~~Ei~~G~~r~~d~~~~~~~~~~~g~~~~----~~~~yl~a~~~G~pP~gG~GiGid 426 (658)
+ | ..+..|||++||+ ||+|||.|+|+|+.|.+.|+..|++++ .|..+|+|++||+|||||+|+|+|
T Consensus 457 ~~~~l~~~p~~~~a~aYDlVlNG~-ElggGSiRIh~~eiQ~~vF~~lg~~~eea~ekFGFll~Af~yGaPPHgGiA~GlD 535 (585)
T COG0173 457 DLELLEADPESVRARAYDLVLNGY-ELGGGSIRIHDPEIQEKVFEILGISPEEAEEKFGFLLEAFKYGAPPHGGIAFGLD 535 (585)
T ss_pred chhhhhcCHHHhhhhhccEEeccE-eeccceeeeCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCCCcceeccHH
Confidence 2 2 2478999999999 999999999999999999999999987 488999999999999999999999
Q ss_pred HHHHHHhcccCcchhhHHHHHhhhhh
Q psy8087 427 RVLCWLLNQYHVRDKYQLIAKAQLKK 452 (658)
Q Consensus 427 RL~m~l~g~~~Irdvi~f~~k~~lk~ 452 (658)
||+|+|+|.+||||||+||...+--.
T Consensus 536 Rlvmll~g~~sIReVIAFPKt~~a~d 561 (585)
T COG0173 536 RLVMLLTGAESIRDVIAFPKTQQAAD 561 (585)
T ss_pred HHHHHHcCCCchhheeecCCCccccc
Confidence 99999999999999999997654433
|
|
| >KOG0556|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-82 Score=650.07 Aligned_cols=369 Identities=28% Similarity=0.463 Sum_probs=330.2
Q ss_pred cCCcEEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccch-----h-hhhhcCCCccEEEEEEEeEeCCCCc----
Q psy8087 68 YIITNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILCQ-----T-EHALLLSTESSVQFRGRIEKVPEEN---- 137 (658)
Q Consensus 68 ~~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~~-----~-~~~~~l~~es~V~v~G~l~~~p~~~---- 137 (658)
..++.|+|+|||++.|-.|| ++|++||+++.+|||++..+... . .+..+|+.||+|.|.|.|++.+...
T Consensus 80 ~~~~~V~vRgrVhtsr~~GK-~~FlvLRq~~~tVQ~~~~~~~~~~isk~Mvkf~~~is~ESiV~v~g~v~k~~~~i~scT 158 (533)
T KOG0556|consen 80 NDGSEVLVRGRVHTSRLKGK-LCFLVLRQQGSTVQCLVAVNEDGTISKQMVKFAGSISKESIVDVRGVVVKVKEPIKSCT 158 (533)
T ss_pred cCCceEEEEEEEeeccccce-EEEEEEeccCceEEEEEEcCCCchHHHHHHHHHhhcCcceEEEEEEEEecCCCcccccc
Confidence 56789999999999999994 89999999999999999754321 1 1335799999999999997654321
Q ss_pred -------------------------------------------------cceEecCCCceeEEeecCCccc---------
Q psy8087 138 -------------------------------------------------MKVQLIHPSSYAIVWLGDLKQG--------- 159 (658)
Q Consensus 138 -------------------------------------------------~d~~l~~p~~R~l~lr~~~~~~--------- 159 (658)
+|+||+| |.||||++..++
T Consensus 159 ~qdvEi~v~~iyviS~a~~~LPl~veDasrse~~eE~a~~~~~~~~~Vn~dtRLdn---RvlDLRtptnqAiFriq~gvc 235 (533)
T KOG0556|consen 159 VQDVEIHVRKIYVISIALPNLPLQVEDASRSEPDEEKAAEPESTLARVNLDTRLDN---RVLDLRTPTNQAIFRIQAGVC 235 (533)
T ss_pred cceeEEEEEEEEEEecccccCCeeehhhcccccchhhhcCCccccceecccccccc---eeeecccccchheeehHHHHH
Confidence 4778887 999999999887
Q ss_pred CchHHHhhhCCcEEEcCCccccccCCCCccceeeccCCcceeeccCHHHHHHHhccc-CCcEEEEeeeeecCCCCCccCc
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQVEGGSTLFSLNFFGEPAYLTQSSQLYLETCLPA-LGDVYCIAQSYRAENSRTRRHL 238 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~eG~~~~F~~~~~~~~~~L~~Spqlylk~li~g-~~rvfeI~~~FR~E~~~~~rHl 238 (658)
.++|+||..+||+||+||+|..+.+|||++.|.+.||+.++||+|||||||||+|+| |+|||||||+||+|+++|+||+
T Consensus 236 ~~FRe~L~~kgF~EIhTpKli~asSEGGanvF~v~Yfk~~A~LAQSPQLyKQMaI~gdf~rVyeIGpVfRAEdSnthRhl 315 (533)
T KOG0556|consen 236 FAFREYLRSKGFVEIHTPKLIGASSEGGANVFRVSYFKQKAYLAQSPQLYKQMAICGDFERVYEIGPVFRAEDSNTHRHL 315 (533)
T ss_pred HHHHHHHHhcCcceecccccccccCCCCceeEEEEeccCcchhhcChHHHHHHHHhcchhheeeecceeeccccchhhhh
Confidence 499999999999999999999999999999999999999999999999999999995 9999999999999999999999
Q ss_pred ceeeeeeeEeecC-CHHHHHHHHHHHHHHHHHHHhhcccccccccCC-----CCCCCCCCcceeeHHHHHHHHHHcCCCC
Q psy8087 239 AEYTHVEAECAFL-TFDDLLDKLEDLICDTVDRVMATHGDLVRQMNP-----NFEPPARPFLRMNYADAIEYLRKHEIRK 312 (658)
Q Consensus 239 ~EFt~lE~e~a~~-d~~~~m~~~e~li~~i~~~~~~~~~~~~~~~~~-----~~~~~~~pf~rit~~ea~~~l~~~g~~~ 312 (658)
+||+.||+||+|. +|+|+|+++.+|+.+|++.+.+++...++..+. +|..+ .|-.|++|.|++.+|++.|++.
T Consensus 316 tEFvGLD~EMaf~~hYhEVm~~i~~lfv~IF~~l~ery~~Eie~Vr~qyp~e~fkf~-~~~lrl~~~e~v~mLreaGvE~ 394 (533)
T KOG0556|consen 316 TEFVGLDLEMAFNEHYHEVMDTIGELFVFIFKGLRERYAKEIETVRKQYPFEPFKFL-EPPLRLTFKEGVAMLREAGVEM 394 (533)
T ss_pred HHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccC-CCceEeehHHHHHHHHHcCccc
Confidence 9999999999998 899999999999999999999888665544332 23222 3456999999999999999876
Q ss_pred CCCCCcccCCCCCCchhhhhhccc-----CCcEEEEeCCCCCCCCCCccCCCCcCceeEEEEEeCCcceeeeceeccCCH
Q psy8087 313 PDNTEYEFGEDIPEMPERKMTDQI-----NRPIMLCRFPADIKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDP 387 (658)
Q Consensus 313 ~~~~~~~~g~~l~~~~e~~l~~~~-----~~p~fi~~~P~~~~pfy~~~~~~~~~~~~~fdL~~~G~~Ei~~G~~r~~d~ 387 (658)
.+ .+||++..|++|+... ..++++.+||.+++|||++++++||.++++||+|++| .||.+|.||+|||
T Consensus 395 g~------~dDlsTe~Ek~LG~lV~eky~tdfyildkyP~avRPFYTmpd~~~p~ySnSyD~fmRG-eEIlSGAQRIhdp 467 (533)
T KOG0556|consen 395 GD------EDDLSTESEKKLGQLVREKYDTDFYILDKYPLAVRPFYTMPDPENPRYSNSYDFFMRG-EEILSGAQRIHDP 467 (533)
T ss_pred CC------ccccCChhHHHHHHHHHHHhCCcEEEEccCccccccccccCCCCCCCcccchhheech-hhhhccccccCCH
Confidence 54 3689999999988654 3577888899999999999999999999999999999 6999999999999
Q ss_pred HHHHHHHHHcCCCCCCCcchHHHhhcCCCCccceecchhHHHHHHhcccCcchhhHHHHHh
Q psy8087 388 EELLAGYKREGIDPAPYYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRDKYQLIAKA 448 (658)
Q Consensus 388 ~~~~~~~~~~g~~~~~~~~yl~a~~~G~pP~gG~GiGidRL~m~l~g~~~Irdvi~f~~k~ 448 (658)
+.|.+|++++|+|+.....|+++++||+|||||+|||+||++|+++|+.|||-+.+||..|
T Consensus 468 e~L~era~~hGid~~~i~~YidsFryG~PPHaGgGIGLERvvmlyl~L~nIR~~SlFPRDP 528 (533)
T KOG0556|consen 468 ELLVERAKEHGIDPSKISTYIDSFRYGAPPHAGGGIGLERVVMLYLGLNNIRKTSLFPRDP 528 (533)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhccCCCCCCCCcccHHHHHHHHhcCCcchhhccCCCCc
Confidence 9999999999999988999999999999999999999999999999999999999999755
|
|
| >PLN02903 aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-79 Score=685.01 Aligned_cols=379 Identities=23% Similarity=0.344 Sum_probs=302.9
Q ss_pred CccccccccccCCCccCCcEEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccch-hh-hhhcCCCccEEEEEEEe
Q psy8087 53 SPCEVGYITCEGPAGYIITNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILCQ-TE-HALLLSTESSVQFRGRI 130 (658)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~~-~~-~~~~l~~es~V~v~G~l 130 (658)
+++.++++.. ..+|++|+|+|||+++|.+| +++|++|||++|.+|||++++... .+ .+..|+.||+|.|+|.|
T Consensus 59 rt~~cg~l~~----~~~gk~V~l~GWV~~~R~~G-~l~FidLRD~~G~iQvV~~~~~~~~~~~~~~~L~~esvV~V~G~V 133 (652)
T PLN02903 59 RSHLCGALSV----NDVGSRVTLCGWVDLHRDMG-GLTFLDVRDHTGIVQVVTLPDEFPEAHRTANRLRNEYVVAVEGTV 133 (652)
T ss_pred CCCchhhcch----hhCCCEEEEEEEEEEEecCC-CcEEEEEEcCCccEEEEEeCCccHHHHHHHhcCCCCCEEEEEEEE
Confidence 3667788855 37899999999999999988 599999999999999999865322 22 23579999999999999
Q ss_pred EeCCC---------CccceEec--------------------------C----CCceeEEeecCCccc---------Cch
Q psy8087 131 EKVPE---------ENMKVQLI--------------------------H----PSSYAIVWLGDLKQG---------GYP 162 (658)
Q Consensus 131 ~~~p~---------~~~d~~l~--------------------------~----p~~R~l~lr~~~~~~---------~~i 162 (658)
...|. +.+|+.++ + .++||||||++..++ ++|
T Consensus 134 ~~r~~~~~n~~~~tGeiEl~~~~i~VL~~a~~~lPf~i~~~~~~~~~~~ee~Rl~~RyLDLR~~~~q~~lr~Rs~i~~~i 213 (652)
T PLN02903 134 RSRPQESPNKKMKTGSVEVVAESVDILNVVTKSLPFLVTTADEQKDSIKEEVRLRYRVLDLRRPQMNANLRLRHRVVKLI 213 (652)
T ss_pred EeCCCcCcCCCCCCCCEEEEEeEEEEEecCCCCCCccccccccccccCChhhhhccceeecCCHHHHHHHHHHHHHHHHH
Confidence 86531 22111110 0 025999999876655 699
Q ss_pred HHHhhh-CCcEEEcCCccccccCCCCccceeecc--CCcceeeccCHHHHHHHhcc-cCCcEEEEeeeeecCCCCCccCc
Q psy8087 163 PEVSLA-NGIAKVTPPTLVQTQVEGGSTLFSLNF--FGEPAYLTQSSQLYLETCLP-ALGDVYCIAQSYRAENSRTRRHL 238 (658)
Q Consensus 163 R~fl~~-~gF~EV~TPiL~~~~~eG~~~~F~~~~--~~~~~~L~~Spqlylk~li~-g~~rvfeI~~~FR~E~~~~~rHl 238 (658)
|+||.+ +||+||+||+|+++++|||++.|...+ .|..+||+||||||||+||+ |++||||||||||||+++++||
T Consensus 214 R~fl~~~~gFiEVeTPiL~~st~eGardf~v~~~~~~g~~y~L~qSPQlykQ~Lm~~G~~RvFqIa~~FR~E~~~t~Rh- 292 (652)
T PLN02903 214 RRYLEDVHGFVEIETPILSRSTPEGARDYLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDRYYQIARCFRDEDLRADRQ- 292 (652)
T ss_pred HHHHHhcCCeEEEECCeeccCCCCCCcccEEeeecCCCcccccCCCHHHHHHHHHhccCCcEEEEehhhccCCCCCCcc-
Confidence 999997 999999999999999999887664443 36778999999999999887 8999999999999999999877
Q ss_pred ceeeeeeeEeecCCHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCCCcceeeHHHHHHHHHHcCCCCCCCCCc
Q psy8087 239 AEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGDLVRQMNPNFEPPARPFLRMNYADAIEYLRKHEIRKPDNTEY 318 (658)
Q Consensus 239 ~EFt~lE~e~a~~d~~~~m~~~e~li~~i~~~~~~~~~~~~~~~~~~~~~~~~pf~rit~~ea~~~l~~~g~~~~~~~~~ 318 (658)
||||||||||+|+|++|+|+++|+||+++++.+.+ ++ +..||+||||.||++. +|.|+||.+.-
T Consensus 293 pEFTqLE~E~sf~d~~dvm~~~E~li~~v~~~~~~----------~~---~~~PF~rity~eA~~~---ygsDKPDlRf~ 356 (652)
T PLN02903 293 PEFTQLDMELAFTPLEDMLKLNEDLIRQVFKEIKG----------VQ---LPNPFPRLTYAEAMSK---YGSDKPDLRYG 356 (652)
T ss_pred cceeeeeeeecCCCHHHHHHHHHHHHHHHHHHHhC----------CC---CCCCceEEEHHHHHHH---HcCCCCcccCC
Confidence 99999999999999999999999999999987764 12 2369999999999986 68888876410
Q ss_pred -------------cc------------------------------------------C----------CC--CCC---c-
Q psy8087 319 -------------EF------------------------------------------G----------ED--IPE---M- 327 (658)
Q Consensus 319 -------------~~------------------------------------------g----------~~--l~~---~- 327 (658)
.+ | ++ +.. .
T Consensus 357 ~~l~dv~~~~~~~~f~~f~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~gl~~~~~~~~~~~~~~~~~~ 436 (652)
T PLN02903 357 LELVDVSDVFAESSFKVFAGALESGGVVKAICVPDGKKISNNTALKKGDIYNEAIKSGAKGLAFLKVLDDGELEGIKALV 436 (652)
T ss_pred ceeeEhHHhhcCCCchhhhhhhccCCeEEEEEeCCCCccchhhhcccHHHHHHHHHcCCCceEEEEEcCCCCccCccchh
Confidence 00 0 00 100 0
Q ss_pred -h---hh-----------------------------------hhhccc-------CCcEEEEeCCC------------CC
Q psy8087 328 -P---ER-----------------------------------KMTDQI-------NRPIMLCRFPA------------DI 349 (658)
Q Consensus 328 -~---e~-----------------------------------~l~~~~-------~~p~fi~~~P~------------~~ 349 (658)
+ +. .|.+.+ -.++||+|||. .+
T Consensus 437 k~~~~~~~~~l~~~~~~~~GD~~~~~a~~~~~~~~~lG~lR~~l~~~l~l~~~~~~~flWV~dFPlFe~~ee~~~~~a~H 516 (652)
T PLN02903 437 ESLSPEQAEQLLAACGAGPGDLILFAAGPTSSVNKTLDRLRQFIAKTLDLIDPSRHSILWVTDFPMFEWNEDEQRLEALH 516 (652)
T ss_pred hcCCHHHHHHHHHHhCCCCCcEEEEECCcchHHHHHHHHHHHHHHHHcCCCCCCCceEEEEEeCCCCCccCCCCceEecC
Confidence 0 00 011111 14789999995 68
Q ss_pred CCCCCccCCCCc-----CceeEEEEEeCCcceeeeceeccCCHHHHHHHHHHcCCCCC----CCcchHHHhhcCCCCccc
Q psy8087 350 KSFYMSKCPENP-----ALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGIDPA----PYYWYTDQRKYGSTPHGG 420 (658)
Q Consensus 350 ~pfy~~~~~~~~-----~~~~~fdL~~~G~~Ei~~G~~r~~d~~~~~~~~~~~g~~~~----~~~~yl~a~~~G~pP~gG 420 (658)
+||+| ++++|- ..+.+|||++||+ ||+|||+|+||++.|+++|+..|++++ .|.|||+|++||+|||||
T Consensus 517 HPFTa-p~~~d~~~l~~~~a~~YDLVlNG~-EiggGS~Rih~~~~q~~~f~~~g~~~e~~~~~F~~~l~a~~yG~PphgG 594 (652)
T PLN02903 517 HPFTA-PNPEDMGDLSSARALAYDMVYNGV-EIGGGSLRIYRRDVQQKVLEAIGLSPEEAESKFGYLLEALDMGAPPHGG 594 (652)
T ss_pred CCCCC-CCCcchhhhhhhhhhcceeEecce-eeccceEecCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCCCCc
Confidence 99965 554442 3578999999998 999999999999999999999999875 489999999999999999
Q ss_pred eecchhHHHHHHhcccCcchhhHHHHHhhhhhhhh
Q psy8087 421 YGLGLERVLCWLLNQYHVRDKYQLIAKAQLKKVSK 455 (658)
Q Consensus 421 ~GiGidRL~m~l~g~~~Irdvi~f~~k~~lk~~~K 455 (658)
+|+|+|||+|+|+|.+||||||+||+...-.+.+-
T Consensus 595 ~alGldRlvmll~~~~~IrdviaFPKt~~g~dlm~ 629 (652)
T PLN02903 595 IAYGLDRLVMLLAGAKSIRDVIAFPKTTTAQCALT 629 (652)
T ss_pred eeecHHHHHHHHcCCCchHheEecCCCCCcccccc
Confidence 99999999999999999999999997766555444
|
|
| >PRK00476 aspS aspartyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-77 Score=675.32 Aligned_cols=377 Identities=26% Similarity=0.371 Sum_probs=301.8
Q ss_pred ccccccccccCCCccCCcEEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccchhh-hhhcCCCccEEEEEEEeEe
Q psy8087 54 PCEVGYITCEGPAGYIITNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILCQTE-HALLLSTESSVQFRGRIEK 132 (658)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~~~~-~~~~l~~es~V~v~G~l~~ 132 (658)
++.++++... ..|++|+|+|||+++|.+| +++|++|||++|.+|||++.. ...+ ....|+.||+|.|+|.|..
T Consensus 5 ~~~~~~l~~~----~~g~~V~l~GwV~~~R~~g-~l~Fi~LrD~~g~iQ~v~~~~-~~~~~~~~~l~~es~V~V~G~v~~ 78 (588)
T PRK00476 5 THYCGELRES----HVGQTVTLCGWVHRRRDHG-GLIFIDLRDREGIVQVVFDPD-AEAFEVAESLRSEYVIQVTGTVRA 78 (588)
T ss_pred ceeHHHhhHH----hCCCEEEEEEEEEEEEeCC-CeEEEEEEeCCceEEEEEeCC-HHHHHHHhCCCCCCEEEEEEEEEe
Confidence 4455666433 5788999999999999998 599999999999999999862 2223 2357999999999999998
Q ss_pred CCC---------CccceEecC----------C---------------CceeEEeecCCccc---------CchHHHhhhC
Q psy8087 133 VPE---------ENMKVQLIH----------P---------------SSYAIVWLGDLKQG---------GYPPEVSLAN 169 (658)
Q Consensus 133 ~p~---------~~~d~~l~~----------p---------------~~R~l~lr~~~~~~---------~~iR~fl~~~ 169 (658)
+|. +.+|+.+++ | ++||||||++..++ +++|+||.++
T Consensus 79 ~~~~~~n~~~~~g~~El~~~~i~il~~a~~lP~~~~~~~~~~~~~Rl~~R~LdlR~~~~~~~l~~Rs~i~~~iR~ff~~~ 158 (588)
T PRK00476 79 RPEGTVNPNLPTGEIEVLASELEVLNKSKTLPFPIDDEEDVSEELRLKYRYLDLRRPEMQKNLKLRSKVTSAIRNFLDDN 158 (588)
T ss_pred cCCcccCccCCCCcEEEEEeEEEEEecCCCCCCcccccccCChhhhhhcceEeecCHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 762 222222110 0 25999999876554 6999999999
Q ss_pred CcEEEcCCccccccCCCCccceeec---cCCcceeeccCHHHHHHHhcc-cCCcEEEEeeeeecCCCCCccCcceeeeee
Q psy8087 170 GIAKVTPPTLVQTQVEGGSTLFSLN---FFGEPAYLTQSSQLYLETCLP-ALGDVYCIAQSYRAENSRTRRHLAEYTHVE 245 (658)
Q Consensus 170 gF~EV~TPiL~~~~~eG~~~~F~~~---~~~~~~~L~~Spqlylk~li~-g~~rvfeI~~~FR~E~~~~~rHl~EFt~lE 245 (658)
||+||+||+|+++++|||++ |.+. +.+..+||+||||||||+|++ |++||||||||||||+++++||+ ||||||
T Consensus 159 gFiEV~TP~L~~s~~ega~~-f~v~~~~~~~~~~~L~qSpql~kq~l~~~g~~rvfqi~~~FR~E~~~~~r~~-EFt~le 236 (588)
T PRK00476 159 GFLEIETPILTKSTPEGARD-YLVPSRVHPGKFYALPQSPQLFKQLLMVAGFDRYYQIARCFRDEDLRADRQP-EFTQID 236 (588)
T ss_pred CCEEEECCeeecCCCCCCcc-ceecccccCCceeecCCCHHHHHHHHHhcccCceEEEeceeecCCCCCCcCc-ccccce
Confidence 99999999999889988765 6433 678888999999999999887 79999999999999999998886 999999
Q ss_pred eEeecCCHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCCCcceeeHHHHHHHHHHcCCCCCCCCCc-------
Q psy8087 246 AECAFLTFDDLLDKLEDLICDTVDRVMATHGDLVRQMNPNFEPPARPFLRMNYADAIEYLRKHEIRKPDNTEY------- 318 (658)
Q Consensus 246 ~e~a~~d~~~~m~~~e~li~~i~~~~~~~~~~~~~~~~~~~~~~~~pf~rit~~ea~~~l~~~g~~~~~~~~~------- 318 (658)
|||+|+|++|+|+++|+||+++++.+.+. + ++.||+|+||.||++. +|.|+||.+..
T Consensus 237 ~e~af~~~~dvm~~~E~li~~i~~~~~~~----------~---~~~pf~r~ty~ea~~~---yg~dkPDlR~~~eI~DVT 300 (588)
T PRK00476 237 IEMSFVTQEDVMALMEGLIRHVFKEVLGV----------D---LPTPFPRMTYAEAMRR---YGSDKPDLRFGLELVDVT 300 (588)
T ss_pred eeecCCCHHHHHHHHHHHHHHHHHHHhCc----------c---CCCCceEEEHHHHHHH---HCCCCCcccCCceehhHH
Confidence 99999999999999999999999988642 2 2479999999999985 68888876410
Q ss_pred ---------------------------cc-------------------C----------C-CCCC-----chh----h--
Q psy8087 319 ---------------------------EF-------------------G----------E-DIPE-----MPE----R-- 330 (658)
Q Consensus 319 ---------------------------~~-------------------g----------~-~l~~-----~~e----~-- 330 (658)
.. | + .+.. ..+ .
T Consensus 301 ~if~~s~f~vf~~~l~~gg~VkaI~vp~~~~~~~rk~id~L~e~AK~~gakGL~~i~~~~~~l~~~~akflsee~~~~L~ 380 (588)
T PRK00476 301 DLFKDSGFKVFAGAANDGGRVKAIRVPGGAAQLSRKQIDELTEFAKIYGAKGLAYIKVNEDGLKGPIAKFLSEEELAALL 380 (588)
T ss_pred HHhccCCchhhhhhhccCCeEEEEEecCCCCccchhHHHHHHHHHHHcCCCceEEEEEcCCCCcCchhhcCCHHHHHHHH
Confidence 00 0 0 0100 000 0
Q ss_pred ------------------------------hhhcc---c----CCcEEEEeCCC------------CCCCCCCccCCC--
Q psy8087 331 ------------------------------KMTDQ---I----NRPIMLCRFPA------------DIKSFYMSKCPE-- 359 (658)
Q Consensus 331 ------------------------------~l~~~---~----~~p~fi~~~P~------------~~~pfy~~~~~~-- 359 (658)
.+.+. + -.++||+|||. .|+||+| ++++
T Consensus 381 e~l~~k~GDll~~~A~~~~~v~~aLG~LR~~L~~~~~~~~~~~~~f~Wv~dfPlf~~~~~~~~~~~~HhpFT~-p~~~d~ 459 (588)
T PRK00476 381 ERTGAKDGDLIFFGADKAKVVNDALGALRLKLGKELGLIDEDKFAFLWVVDFPMFEYDEEEGRWVAAHHPFTM-PKDEDL 459 (588)
T ss_pred HHhCCCCCCEEEEECCchHHHHHHHHHHHHHHHHHcCCCCCCCceEEEEEeCCCCCccCCCCeeeeecCCCCC-cCccCh
Confidence 00010 1 24789999995 6899966 4443
Q ss_pred ------Cc--CceeEEEEEeCCcceeeeceeccCCHHHHHHHHHHcCCCCC----CCcchHHHhhcCCCCccceecchhH
Q psy8087 360 ------NP--ALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGIDPA----PYYWYTDQRKYGSTPHGGYGLGLER 427 (658)
Q Consensus 360 ------~~--~~~~~fdL~~~G~~Ei~~G~~r~~d~~~~~~~~~~~g~~~~----~~~~yl~a~~~G~pP~gG~GiGidR 427 (658)
|| ..+++|||++||+ ||+|||+|+||++.|+++|+..|++++ .|+|||+|++||+|||||||+|+||
T Consensus 460 ~~l~~~~p~~~~a~~~dlv~ng~-E~~~gs~ri~~~~~q~~~~~~~~~~~~~~~~~~~~~~~a~~~g~pph~g~~~G~dr 538 (588)
T PRK00476 460 DELETTDPGKARAYAYDLVLNGY-ELGGGSIRIHRPEIQEKVFEILGISEEEAEEKFGFLLDALKYGAPPHGGIAFGLDR 538 (588)
T ss_pred hHhhcCCHHHhhhheeeeEEeee-eeccceEEeCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCCCcceeccHHH
Confidence 43 3679999999998 999999999999999999999999876 5899999999999999999999999
Q ss_pred HHHHHhcccCcchhhHHHHHhhhhhhhhh
Q psy8087 428 VLCWLLNQYHVRDKYQLIAKAQLKKVSKL 456 (658)
Q Consensus 428 L~m~l~g~~~Irdvi~f~~k~~lk~~~K~ 456 (658)
|+|+|+|.+||||||+||....-++.+-.
T Consensus 539 ~~~~~~~~~~irdvi~fp~~~~g~d~~~~ 567 (588)
T PRK00476 539 LVMLLAGADSIRDVIAFPKTQSAQDLLTG 567 (588)
T ss_pred HHHHHcCCccHHheeeccCCCCccccccC
Confidence 99999999999999999987666655443
|
|
| >cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-78 Score=639.19 Aligned_cols=303 Identities=39% Similarity=0.704 Sum_probs=274.7
Q ss_pred cceEecCCCceeEEeecCCccc---------CchHHHhhhCCcEEEcCCccccccCCCCccceeeccCCcceeeccCHHH
Q psy8087 138 MKVQLIHPSSYAIVWLGDLKQG---------GYPPEVSLANGIAKVTPPTLVQTQVEGGSTLFSLNFFGEPAYLTQSSQL 208 (658)
Q Consensus 138 ~d~~l~~p~~R~l~lr~~~~~~---------~~iR~fl~~~gF~EV~TPiL~~~~~eG~~~~F~~~~~~~~~~L~~Spql 208 (658)
+|+++++ ||||+|++..++ +++|+||.++||+||+||+|+++++||++++|+++|||.++||+|||||
T Consensus 4 ~~~~~~~---r~l~lr~~~~~~~~~~rs~i~~~ir~~f~~~gf~eV~TP~l~~~~~e~~~~~f~~~~~~~~~yL~~Spql 80 (322)
T cd00776 4 LETLLDN---RHLDLRTPKVQAIFRIRSEVLRAFREFLRENGFTEVHTPKITSTDTEGGAELFKVSYFGKPAYLAQSPQL 80 (322)
T ss_pred hHhhhhC---ceeeeCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEeeCCceecCCCCccCCccccccCCCcceecCCHHH
Confidence 4567777 999999765443 6999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccCCcEEEEeeeeecCCCCCccCcceeeeeeeEeecC-CHHHHHHHHHHHHHHHHHHHhhcccccccc---cCC
Q psy8087 209 YLETCLPALGDVYCIAQSYRAENSRTRRHLAEYTHVEAECAFL-TFDDLLDKLEDLICDTVDRVMATHGDLVRQ---MNP 284 (658)
Q Consensus 209 ylk~li~g~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~a~~-d~~~~m~~~e~li~~i~~~~~~~~~~~~~~---~~~ 284 (658)
|||++++|++|||+||||||||++++.||||||||||||++|+ |++|+|+++|+||++++..+.+.+...+.. .+.
T Consensus 81 ~lk~l~~~~~~vf~i~~~FR~E~~~~~rHl~EFtmlE~e~~~~~~~~dlm~~~e~ll~~~~~~l~~~~~~~~~~~~~~~~ 160 (322)
T cd00776 81 YKEMLIAALERVYEIGPVFRAEKSNTRRHLSEFWMLEAEMAFIEDYNEVMDLIEELIKYIFKRVLERCAKELELVNQLNR 160 (322)
T ss_pred HHHHHHHhhhhhEEeccccccCCCCcCCCcceeeccceeeeccCCHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhccCc
Confidence 9999998899999999999999999999999999999999999 999999999999999999998776544322 221
Q ss_pred CCCCCCCCcceeeHHHHHHHHHHcCCCCCCCCCcccCCCCCCchhhhhhccc-CCcEEEEeCCCCCCCCCCccCCCCcCc
Q psy8087 285 NFEPPARPFLRMNYADAIEYLRKHEIRKPDNTEYEFGEDIPEMPERKMTDQI-NRPIMLCRFPADIKSFYMSKCPENPAL 363 (658)
Q Consensus 285 ~~~~~~~pf~rit~~ea~~~l~~~g~~~~~~~~~~~g~~l~~~~e~~l~~~~-~~p~fi~~~P~~~~pfy~~~~~~~~~~ 363 (658)
....+..||+||||.||++++++.|... ...||++++..+|+++++.+ +.|+||+|||.+++|||++.++++|++
T Consensus 161 ~~~~~~~~~~rit~~eA~~~l~~~~~~~----~~~~~~~l~~~~e~~l~~~~~~~p~fi~~~P~~~~pfy~~~~~~~~~~ 236 (322)
T cd00776 161 ELLKPLEPFPRITYDEAIELLREKGVEE----EVKWGEDLSTEHERLLGEIVKGDPVFVTDYPKEIKPFYMKPDDDNPET 236 (322)
T ss_pred ccccCCCCceEEEHHHHHHHHHHcCCCC----CCCccchhcHHHHHHHHHHhCCCcEEEECCccccCCceeeecCCCCCe
Confidence 1112357999999999999998877531 24688999999999999988 899999999999999999999999999
Q ss_pred eeEEEEEeCCcceeeeceeccCCHHHHHHHHHHcCCCCCCCcchHHHhhcCCCCccceecchhHHHHHHhcccCcchhhH
Q psy8087 364 TESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGIDPAPYYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRDKYQ 443 (658)
Q Consensus 364 ~~~fdL~~~G~~Ei~~G~~r~~d~~~~~~~~~~~g~~~~~~~~yl~a~~~G~pP~gG~GiGidRL~m~l~g~~~Irdvi~ 443 (658)
++|||||++|++||+|||+|+|||++|++||+++|++++.++|||+|++||+|||||||||||||+|+++|.+|||||++
T Consensus 237 ~~~fdl~~~G~~El~~g~~r~~d~~~l~~r~~~~g~~~~~~~~yl~a~~~G~pp~~G~giGidRL~m~~~g~~~Irdv~~ 316 (322)
T cd00776 237 VESFDLLMPGVGEIVGGSQRIHDYDELEERIKEHGLDPESFEWYLDLRKYGMPPHGGFGLGLERLVMWLLGLDNIREAIL 316 (322)
T ss_pred eEEEEEEcCCCeEEeeceeecCCHHHHHHHHHHcCCChHHHHHHHHHHHCCCCCCceeeEhHHHHHHHHcCCCchheEee
Confidence 99999999995599999999999999999999999999899999999999999999999999999999999999999999
Q ss_pred HHHH
Q psy8087 444 LIAK 447 (658)
Q Consensus 444 f~~k 447 (658)
||..
T Consensus 317 FPr~ 320 (322)
T cd00776 317 FPRD 320 (322)
T ss_pred cCCC
Confidence 9854
|
Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. |
| >PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-77 Score=673.39 Aligned_cols=370 Identities=22% Similarity=0.369 Sum_probs=294.7
Q ss_pred CccccccccccCCCccCCcEEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccc--hhh-hhhcCCCccEEEEEEE
Q psy8087 53 SPCEVGYITCEGPAGYIITNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILC--QTE-HALLLSTESSVQFRGR 129 (658)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~--~~~-~~~~l~~es~V~v~G~ 129 (658)
+++.++++... ..|+.|+|+|||+++|++|| ++|++|||++|.||||++++.. ..+ ....|+.||+|.|+|.
T Consensus 5 r~~~cg~l~~~----~~g~~V~l~GWV~~~R~~G~-l~FidLRD~~G~iQvV~~~~~~~~~~~~~~~~L~~EsvV~V~G~ 79 (706)
T PRK12820 5 DRSFCGHLSLD----DTGREVCLAGWVDAFRDHGE-LLFIHLRDRNGFIQAVFSPEAAPADVYELAASLRAEFCVALQGE 79 (706)
T ss_pred cccccccCChh----hCCCEEEEEEEEEEEEcCCC-cEEEEEEeCCccEEEEEeCCcCCHHHHHHHhcCCCCCEEEEEeE
Confidence 35566788553 67899999999999999985 9999999999999999986542 123 2357999999999999
Q ss_pred eEeCCC---------Cccc---------------------------------------eEecCCCceeEEeecCCccc--
Q psy8087 130 IEKVPE---------ENMK---------------------------------------VQLIHPSSYAIVWLGDLKQG-- 159 (658)
Q Consensus 130 l~~~p~---------~~~d---------------------------------------~~l~~p~~R~l~lr~~~~~~-- 159 (658)
|..+|. +.+| +|+ ++||||||++..++
T Consensus 80 v~~r~~~~~n~~~~tg~iEl~~~~i~iL~~a~~lP~~i~~~~~~~~~~~~~~~~~~e~~Rl---~~RyLDLR~~~~~~~l 156 (706)
T PRK12820 80 VQKRLEETENPHIETGDIEVFVRELSILAASEALPFAISDKAMTAGAGSAGADAVNEDLRL---QYRYLDIRRPAMQDHL 156 (706)
T ss_pred EeccCccccCCCCCCCcEEEEeeEEEEEecCCCCCCCCcccccccccccccccccCHhhhh---hCceeecCCHHHHHHH
Confidence 987532 2111 122 25999999876554
Q ss_pred -------CchHHHhhhCCcEEEcCCccccccCCCCccce-eeccCC-cceeeccCHHHHHHHhcc-cCCcEEEEeeeeec
Q psy8087 160 -------GYPPEVSLANGIAKVTPPTLVQTQVEGGSTLF-SLNFFG-EPAYLTQSSQLYLETCLP-ALGDVYCIAQSYRA 229 (658)
Q Consensus 160 -------~~iR~fl~~~gF~EV~TPiL~~~~~eG~~~~F-~~~~~~-~~~~L~~Spqlylk~li~-g~~rvfeI~~~FR~ 229 (658)
++||+||.++||+||+||+|+++++|||++.+ +.++++ ..++|+||||||||+||+ |++|||||||||||
T Consensus 157 r~Rs~i~~~iR~fl~~~gFiEVeTPiL~~s~~eGAr~~~~p~~~~~~~~y~L~qSPQlykq~lm~~G~~rvfqI~~~FR~ 236 (706)
T PRK12820 157 AKRHRIIKCARDFLDSRGFLEIETPILTKSTPEGARDYLVPSRIHPKEFYALPQSPQLFKQLLMIAGFERYFQLARCFRD 236 (706)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEeCCccccCCCCCCcceEEeeecCCCcceecCCCHHHHHHHHHhccCCcEEEEechhcC
Confidence 69999999999999999999999999987754 555554 455699999999999986 89999999999999
Q ss_pred CCCCCccCcceeeeeeeEeecCCHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCCCcceeeHHHHHHHHHHcC
Q psy8087 230 ENSRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGDLVRQMNPNFEPPARPFLRMNYADAIEYLRKHE 309 (658)
Q Consensus 230 E~~~~~rHl~EFt~lE~e~a~~d~~~~m~~~e~li~~i~~~~~~~~~~~~~~~~~~~~~~~~pf~rit~~ea~~~l~~~g 309 (658)
|+++++|| ||||||||||+|+|++|+|+++|+||+++++ +. +.+ ++.||+||||.||++. +|
T Consensus 237 E~~~t~r~-pEFT~LE~E~af~d~~dvm~l~E~li~~v~~-~~----------~~~---~~~pf~r~ty~eA~~~---yG 298 (706)
T PRK12820 237 EDLRPNRQ-PEFTQLDIEASFIDEEFIFELIEELTARMFA-IG----------GIA---LPRPFPRMPYAEAMDT---TG 298 (706)
T ss_pred CCCCCCcC-ccccccceeeccCCHHHHHHHHHHHHHHHHH-hc----------CcC---CCCCceEEEHHHHHHH---hC
Confidence 99999776 9999999999999999999999999999985 11 122 2469999999999986 69
Q ss_pred CCCCCCCC------------------cc-------------c-C--CCC-----CC-c----------------------
Q psy8087 310 IRKPDNTE------------------YE-------------F-G--EDI-----PE-M---------------------- 327 (658)
Q Consensus 310 ~~~~~~~~------------------~~-------------~-g--~~l-----~~-~---------------------- 327 (658)
.|+||++. +. . | ..+ +. +
T Consensus 299 ~DKPDlR~~~~l~d~~~~~~~~~f~~f~~~~~~~g~v~~i~~~~~~~~~s~~~~~~~~~~~~~~~~g~~gl~~~~~~~~~ 378 (706)
T PRK12820 299 SDRPDLRFDLKFADATDIFENTRYGIFKQILQRGGRIKGINIKGQSEKLSKNVLQNEYAKEIAPSFGAKGMTWMRAEAGG 378 (706)
T ss_pred CCCCccccCcEEEEHHHHhccCCchhhhhhhccCCeEEEEEeCCCccccCHHHHHHHHHHHHHHHcCCCceEEEEECCCC
Confidence 89888651 00 0 0 000 00 0
Q ss_pred ---------hhh------------------------------hhh-------cc-------cCCcEEEEeCCC-------
Q psy8087 328 ---------PER------------------------------KMT-------DQ-------INRPIMLCRFPA------- 347 (658)
Q Consensus 328 ---------~e~------------------------------~l~-------~~-------~~~p~fi~~~P~------- 347 (658)
.+. .|+ +. .-.++||+|||.
T Consensus 379 ~~~~~~~~~~~~~~~~l~~~~~~~~gd~~~~~a~~~~~~~~~~LG~lR~~l~~~~~l~~~~~~~flWV~dFPlfe~~~e~ 458 (706)
T PRK12820 379 LDSNIVQFFSADEKEALKRRFHAEDGDVIIMIADASCAIVLSALGQLRLHLADRLGLIPEGVFHPLWITDFPLFEATDDG 458 (706)
T ss_pred cCCchhccCCHHHHHHHHHHhCCCCCCEEEEECCCcchHHHHHHHHHHHHHHHHcCCCCCCCceEEEEEeCCcccCCCCC
Confidence 000 000 00 023689999997
Q ss_pred ----CCCCCCCccCCC--------Cc--CceeEEEEEeCCcceeeeceeccCCHHHHHHHHHHcCCCCC----CCcchHH
Q psy8087 348 ----DIKSFYMSKCPE--------NP--ALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGIDPA----PYYWYTD 409 (658)
Q Consensus 348 ----~~~pfy~~~~~~--------~~--~~~~~fdL~~~G~~Ei~~G~~r~~d~~~~~~~~~~~g~~~~----~~~~yl~ 409 (658)
.|+||+| ++++ || ..+.+|||++||+ ||+|||+|+||++.|++.|+..|++++ .|.+||+
T Consensus 459 ~~~a~HHPFT~-p~~~d~~~l~~~~p~~~~~~~YDLV~nG~-E~ggGs~Rih~~~~q~~~f~~lg~~~~~~~~~Fgf~l~ 536 (706)
T PRK12820 459 GVTSSHHPFTA-PDREDFDPGDIEELLDLRSRAYDLVVNGE-ELGGGSIRINDKDIQLRIFAALGLSEEDIEDKFGFFLR 536 (706)
T ss_pred CeeeeeCCCCC-cCccChhhhccCChHHhhhheeeEEecce-eeccceEEeCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 6899966 4433 22 2468999999998 999999999999999999999999875 3789999
Q ss_pred HhhcCCCCccceecchhHHHHHHhcccCcchhhHHHHHhhh
Q psy8087 410 QRKYGSTPHGGYGLGLERVLCWLLNQYHVRDKYQLIAKAQL 450 (658)
Q Consensus 410 a~~~G~pP~gG~GiGidRL~m~l~g~~~Irdvi~f~~k~~l 450 (658)
|++||+|||||+|+|+|||+|+|+|.+||||||+||+...-
T Consensus 537 a~~~G~pphgG~a~G~dRlvm~l~~~~sirdviaFPK~~~g 577 (706)
T PRK12820 537 AFDFAAPPHGGIALGLDRVVSMILQTPSIREVIAFPKNRSA 577 (706)
T ss_pred HHhcCCCCCCceeccHHHHHHHHcCCccHHHhcccCCCCCC
Confidence 99999999999999999999999999999999999965433
|
|
| >KOG0554|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-75 Score=601.34 Aligned_cols=371 Identities=29% Similarity=0.469 Sum_probs=314.9
Q ss_pred CccCCcEEEEeEEeecceecCCCeEEEEEEcCCeE--EEEEEecccchhhhhhcCCCccEEEEEEEeEeCCCCc--cceE
Q psy8087 66 AGYIITNINIPAIPGPPAIPGKGLMFVTLRDGSGF--IQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEEN--MKVQ 141 (658)
Q Consensus 66 ~~~~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~--iQvv~~~~~~~~~~~~~l~~es~V~v~G~l~~~p~~~--~d~~ 141 (658)
....|++++|.|||.++|+.++ ++|++|.||++. +|||++.+.. ..+..|++|.++|.+.-...+. +++-
T Consensus 16 ~~~~g~~~~i~GWvKsvr~~~~-~~Fl~i~DGs~~~~lQvVv~~~~~-----q~la~Gt~i~~~g~l~~~~~~~q~iel~ 89 (446)
T KOG0554|consen 16 HPRAGDTISIGGWVKSVRKLKK-VTFLDINDGSCPSPLQVVVDSEQS-----QLLATGTCISAEGVLKVSKGAKQQIELN 89 (446)
T ss_pred CCCCCCceeecchhhhcccccc-eEEEEecCCCCCcceEEEechHHh-----hhccccceEEEEeeEEeccchheeeeee
Confidence 3467899999999999998886 899999999984 9999987432 3689999999999998764332 1111
Q ss_pred ---------ecC--C--C----------ceeEEeecCCccc---------CchHHHhhhCCcEEEcCCccccccCCCCcc
Q psy8087 142 ---------LIH--P--S----------SYAIVWLGDLKQG---------GYPPEVSLANGIAKVTPPTLVQTQVEGGST 189 (658)
Q Consensus 142 ---------l~~--p--~----------~R~l~lr~~~~~~---------~~iR~fl~~~gF~EV~TPiL~~~~~eG~~~ 189 (658)
+++ | + .-||..|++..++ .++++||.+++|++|+||||+.++||||++
T Consensus 90 ~eki~~vG~v~~~ypl~Kk~lt~e~LR~~~HLR~Rt~~~~av~RvRs~~~~a~h~ffq~~~F~~i~tPiiTt~DCEGaGE 169 (446)
T KOG0554|consen 90 AEKIKVVGTVDESYPLQKKKLTPEMLRDKLHLRSRTAKVGAVLRVRSALAFATHSFFQSHDFTYINTPIITTNDCEGAGE 169 (446)
T ss_pred eeEEEEEeecCCCCCCccccCCHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHcCceEecCcEeeccCCCCCcc
Confidence 111 1 1 1255556554433 488999999999999999999999999999
Q ss_pred ceee--------ccCCcceeeccCHHHHHHHhcccCCcEEEEeeeeecCCCCCccCcceeeeeeeEeecCC-HHHHHHHH
Q psy8087 190 LFSL--------NFFGEPAYLTQSSQLYLETCLPALGDVYCIAQSYRAENSRTRRHLAEYTHVEAECAFLT-FDDLLDKL 260 (658)
Q Consensus 190 ~F~~--------~~~~~~~~L~~Spqlylk~li~g~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~a~~d-~~~~m~~~ 260 (658)
.|.+ +|||+++||++|.|||++.+++++.|||.+||+||+|+++++|||.||||+|.|+||++ ++|+|.++
T Consensus 170 ~F~vtt~~d~~~~fFg~p~fLTVSgQLhlE~~a~~LsrvyTfgP~FRAEnS~tsRHLAEFwMlEaE~AF~~sl~d~m~~~ 249 (446)
T KOG0554|consen 170 VFQVTTLTDYSKDFFGRPAFLTVSGQLHLEAMACALSRVYTFGPTFRAENSHTSRHLAEFWMLEAELAFAESLDDLMSCA 249 (446)
T ss_pred eEEEEecCcccccccCCceEEEEeceehHHHHHhhhcceEeeccceecccCCchhHHhhhhhhhhHHHHHHHHHHHHHHH
Confidence 9953 58999999999999999999999999999999999999999999999999999999997 99999999
Q ss_pred HHHHHHHHHHHhhcccccccc----cCCC----C-CCCCCCcceeeHHHHHHHHHHcCCCCCCCCCcccCCCCCCchhhh
Q psy8087 261 EDLICDTVDRVMATHGDLVRQ----MNPN----F-EPPARPFLRMNYADAIEYLRKHEIRKPDNTEYEFGEDIPEMPERK 331 (658)
Q Consensus 261 e~li~~i~~~~~~~~~~~~~~----~~~~----~-~~~~~pf~rit~~ea~~~l~~~g~~~~~~~~~~~g~~l~~~~e~~ 331 (658)
|.+++++++.+.+++.+..+. ..+. + ...+.+|.+|||.||+++|++...+ ......+||.+|.+++|++
T Consensus 250 e~~~K~mik~llek~~edmel~~k~~~~~~~~rl~~~~~~~~~~~tYteAie~L~~a~t~-~fk~~~kwG~~l~~ehe~y 328 (446)
T KOG0554|consen 250 EAYIKHMIKYLLEKCIEDMELMHKNEDPGSIDRLELVAKENLLRITYTEAIELLQKAVTK-KFKTPPKWGIDLSTEHEKY 328 (446)
T ss_pred HHHHHHHHHHHHhhccchhheeccccCCCccchhhhhccchhhhccHHHHHHHHHHhccc-ccccCcccccccchhhHHH
Confidence 999999999999987543321 1111 1 1234568899999999999887642 1223578999999999999
Q ss_pred hhccc-CCcEEEEeCCCCCCCCCCccCCCCcCceeEEEEEeCCcceeeeceeccCCHHHHHHHHHHcCCCCCCCcchHHH
Q psy8087 332 MTDQI-NRPIMLCRFPADIKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGIDPAPYYWYTDQ 410 (658)
Q Consensus 332 l~~~~-~~p~fi~~~P~~~~pfy~~~~~~~~~~~~~fdL~~~G~~Ei~~G~~r~~d~~~~~~~~~~~g~~~~~~~~yl~a 410 (658)
|.+.+ +.|+||+|||..++||||+.+.+++ .+.+|||++||+|||+|||+|+.+ .+++++.|..++.++|||+.
T Consensus 329 L~~~~~~~PVfV~dYP~~iKpFYMr~n~~~~-tVaa~DlLVP~vGEliGGSlREe~----~~~l~e~g~~~~~~eWYldL 403 (446)
T KOG0554|consen 329 LVEECFKKPVFVTDYPKGIKPFYMRLNDDGK-TVAAFDLLVPGVGELIGGSLREER----KARLKERGLTREELEWYLDL 403 (446)
T ss_pred HHHHhcCCCEEEEeccccccceEEEecCCCC-eeEEEEeecccchhhcCcccchhh----HHHHHhcCCCccccceehhh
Confidence 98875 6899999999999999999986666 678999999999999999999999 67888999999999999999
Q ss_pred hhcCCCCccceecchhHHHHHHhcccCcchhhHHHHHh
Q psy8087 411 RKYGSTPHGGYGLGLERVLCWLLNQYHVRDKYQLIAKA 448 (658)
Q Consensus 411 ~~~G~pP~gG~GiGidRL~m~l~g~~~Irdvi~f~~k~ 448 (658)
++||.+||||||||+||++.+++|.+||||||+||.-+
T Consensus 404 RryG~vphgGFGlGfER~lq~~tG~~nIkd~IPFpR~~ 441 (446)
T KOG0554|consen 404 RRYGSVPHGGFGLGFERMLQYLTGNDNIKDVIPFPRYP 441 (446)
T ss_pred hhcCCCCCCcccccHHHHHHHHhCCcchhhceecCCCc
Confidence 99999999999999999999999999999999998543
|
|
| >PRK06462 asparagine synthetase A; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-75 Score=624.04 Aligned_cols=302 Identities=25% Similarity=0.454 Sum_probs=271.2
Q ss_pred cceEecCCCceeEEeecCCccc---------CchHHHhhhCCcEEEcCCccccccCCCC-------ccceeeccCCccee
Q psy8087 138 MKVQLIHPSSYAIVWLGDLKQG---------GYPPEVSLANGIAKVTPPTLVQTQVEGG-------STLFSLNFFGEPAY 201 (658)
Q Consensus 138 ~d~~l~~p~~R~l~lr~~~~~~---------~~iR~fl~~~gF~EV~TPiL~~~~~eG~-------~~~F~~~~~~~~~~ 201 (658)
++.+++| |++++|++..++ +++|+||.++||+||+||+|++++++|. ...|+++|||+++|
T Consensus 10 ~~~~~~~---r~~~lr~~~~~~il~~Rs~i~~~iR~ff~~~~f~EV~TP~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~y 86 (335)
T PRK06462 10 YEEFLRM---SWKHISSEKYRKVLKVQSSILRYTREFLDGRGFVEVLPPIISPSTDPLMGLGSDLPVKQISIDFYGVEYY 86 (335)
T ss_pred hhhhhhh---HHHHhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCCeEecCCCCCCCccccCCccccccccCCCcee
Confidence 6778888 999999876554 6999999999999999999988766643 22467889999999
Q ss_pred eccCHHHHHHHhcccCCcEEEEeeeeecCCCCC--ccCcceeeeeeeEeecCCHHHHHHHHHHHHHHHHHHHhhcccccc
Q psy8087 202 LTQSSQLYLETCLPALGDVYCIAQSYRAENSRT--RRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGDLV 279 (658)
Q Consensus 202 L~~Spqlylk~li~g~~rvfeI~~~FR~E~~~~--~rHl~EFt~lE~e~a~~d~~~~m~~~e~li~~i~~~~~~~~~~~~ 279 (658)
|++|||||||++++|++||||||||||||++++ +||||||||||||++|+||+|+|+++|+||++++..+.+++...+
T Consensus 87 L~~Spql~k~ll~~g~~rVfeI~p~FR~E~~~~~~~rHl~EFtmlE~e~~~~d~~dlm~~~e~lv~~i~~~~~~~~~~~i 166 (335)
T PRK06462 87 LADSMILHKQLALRMLGKIFYLSPNFRLEPVDKDTGRHLYEFTQLDIEIEGADLDEVMDLIEDLIKYLVKELLEEHEDEL 166 (335)
T ss_pred eccCHHHHHHHHHhhcCcEEEEeccccCCCCCCCCCCCCCchheeeehhhcCCHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 999999998888889999999999999999987 799999999999999999999999999999999999988876555
Q ss_pred cccCCCCCCCCCCcceeeHHHHHHHHHHcCCCCCCCCCcccCCCCCCchhhhhhcccCCcEEEEeCCCCCCCCCCccCCC
Q psy8087 280 RQMNPNFEPPARPFLRMNYADAIEYLRKHEIRKPDNTEYEFGEDIPEMPERKMTDQINRPIMLCRFPADIKSFYMSKCPE 359 (658)
Q Consensus 280 ~~~~~~~~~~~~pf~rit~~ea~~~l~~~g~~~~~~~~~~~g~~l~~~~e~~l~~~~~~p~fi~~~P~~~~pfy~~~~~~ 359 (658)
..++..+..++.||+||||.||++++++.|.+.. .+++++..+|+++++.++.|+||+|||.+++|||++.+++
T Consensus 167 ~~~~~~~~~~~~p~~rit~~eA~~~l~~~~~~~~------~~~~l~~~~E~~l~~~~~~p~fi~~yP~~~~pfy~~~~~~ 240 (335)
T PRK06462 167 EFFGRDLPHLKRPFKRITHKEAVEILNEEGCRGI------DLEELGSEGEKSLSEHFEEPFWIIDIPKGSREFYDREDPE 240 (335)
T ss_pred HhcCCccccCCCCCeEEEHHHHHHHHHhcCCCcc------hHHHHhHHHHHHHHHHhCCCEEEECCChhhCCcccccCCC
Confidence 4444433334579999999999999988876532 3678889999999999999999999999999999999889
Q ss_pred CcCceeEEEEEeC-CcceeeeceeccCCHHHHHHHHHHcCCCCCCCcchHHHhhcCCCCccceecchhHHHHHHhcccCc
Q psy8087 360 NPALTESVDVLFP-NVGEVIGGSMRIWDPEELLAGYKREGIDPAPYYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHV 438 (658)
Q Consensus 360 ~~~~~~~fdL~~~-G~~Ei~~G~~r~~d~~~~~~~~~~~g~~~~~~~~yl~a~~~G~pP~gG~GiGidRL~m~l~g~~~I 438 (658)
+|++++|||||++ |+|||++|++|+|+++++.++++++|++++.|+|||+|++||||||||||||||||+|+++|.+||
T Consensus 241 ~~~~~~rFdL~~~~g~gEl~~g~er~~~~~~l~~~~~~~g~~~~~~~~yl~a~~~G~pp~~G~glGidRLvm~~~g~~~I 320 (335)
T PRK06462 241 RPGVLRNYDLLLPEGYGEAVSGGEREYEYEEIVERIREHGVDPEKYKWYLEMAKEGPLPSAGFGIGVERLTRYICGLRHI 320 (335)
T ss_pred CCCEEEEEEEEeeCCCcEEeeeEEEecCHHHHHHHHHHcCCChHHHHHHHHHHHCCCCCCCeEEEcHHHHHHHHcCCCch
Confidence 9999999999997 778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHh
Q psy8087 439 RDKYQLIAKA 448 (658)
Q Consensus 439 rdvi~f~~k~ 448 (658)
|||++||..+
T Consensus 321 rdv~~FPr~~ 330 (335)
T PRK06462 321 REVQPFPRVP 330 (335)
T ss_pred heeeeccCCC
Confidence 9999998654
|
|
| >PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-74 Score=616.50 Aligned_cols=300 Identities=35% Similarity=0.619 Sum_probs=248.2
Q ss_pred ceEecCCCceeEEeecCCccc---------CchHHHhhhCCcEEEcCCccccccCCCCccceeec-----cCCcceeecc
Q psy8087 139 KVQLIHPSSYAIVWLGDLKQG---------GYPPEVSLANGIAKVTPPTLVQTQVEGGSTLFSLN-----FFGEPAYLTQ 204 (658)
Q Consensus 139 d~~l~~p~~R~l~lr~~~~~~---------~~iR~fl~~~gF~EV~TPiL~~~~~eG~~~~F~~~-----~~~~~~~L~~ 204 (658)
|+++++ ||+|+|++..++ ++||+||.++||+||+||+|++++++||+++|.++ |||.++||++
T Consensus 3 e~~~~~---r~l~~r~~~~~~~~~~rs~i~~~ir~ff~~~~f~Ev~tP~l~~~~~~~~~~~F~v~~~~~~~~~~~~~L~~ 79 (335)
T PF00152_consen 3 ETRLDN---RHLDLRTPAMSSILRIRSAILQAIREFFDKRGFIEVDTPILTSSTCEGGAEPFSVDSEPGKYFGEPAYLTQ 79 (335)
T ss_dssp HHHHHT---HHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTT-EEE---SEESSSSSSSSCSEEEEESTTEETTEEEEE-S
T ss_pred hhhhhc---cceeccCcHHHHHHHHHHHHHHHHHHHHHhCCceEEcCceeeccccCccccccccccchhhhcccceecCc
Confidence 456777 999999987655 69999999999999999999999999999999998 9999999999
Q ss_pred CHHHHHHHhcc-cCCcEEEEeeeeecCCCCCccCcceeeeeeeEeecCCHHHHHHHHHHHHHHHHHHHhhcccccccccC
Q psy8087 205 SSQLYLETCLP-ALGDVYCIAQSYRAENSRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGDLVRQMN 283 (658)
Q Consensus 205 Spqlylk~li~-g~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~a~~d~~~~m~~~e~li~~i~~~~~~~~~~~~~~~~ 283 (658)
|||||||++++ |++||||||||||||+++++|||||||||||||+|+|++++|+++|+||+++++.+.+..... .++
T Consensus 80 Spql~~k~ll~~g~~~vf~i~~~FR~E~~~~~rHl~EFtmLE~e~a~~~~~~lm~~~e~li~~i~~~~~~~~~~~--~~~ 157 (335)
T PF00152_consen 80 SPQLYLKRLLAAGLERVFEIGPCFRNEESRTRRHLPEFTMLEWEMAFADYDDLMDLIEELIKYIFKELLENAKEL--SLN 157 (335)
T ss_dssp SSHHHHHHHHHTTHSEEEEEEEEE-BSSSCBTTBSSEEEEEEEEEETSSHHHHHHHHHHHHHHHHHHHHHHHHHH--HTC
T ss_pred ChHHHHhhhccccchhhhheecceeccCcccccchhhhhhhhhccccCcHHHhHHHHHHHHHHHHHHHhccCccc--ccc
Confidence 99999999998 699999999999999998999999999999999999999999999999999999997553222 113
Q ss_pred CCCCCCCCCcceeeHHHHHHHHHHcCCCCCCCC-----------CcccCCCCCCchhhhhh-cccCCcEEEEeCCCCCCC
Q psy8087 284 PNFEPPARPFLRMNYADAIEYLRKHEIRKPDNT-----------EYEFGEDIPEMPERKMT-DQINRPIMLCRFPADIKS 351 (658)
Q Consensus 284 ~~~~~~~~pf~rit~~ea~~~l~~~g~~~~~~~-----------~~~~g~~l~~~~e~~l~-~~~~~p~fi~~~P~~~~p 351 (658)
.++ ..||++++|.||++++...+.+..... ...+|.++....|+.|. .....|+||+|||..++|
T Consensus 158 ~~~---~~~f~ri~~~ea~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~e~~L~~~~~~~p~fI~~~P~~~~p 234 (335)
T PF00152_consen 158 IDL---PKPFPRITYEEAFEIYGGDKPDLRFDEELDDLAEIEELEFEVGRLLSEEVEPYLVEKYFTDPVFITDYPAEQSP 234 (335)
T ss_dssp EES---SSS-EEEEHHHHHHHHHHTTTTTTTCHHHHHHHHHHHTTHHCHHHHHHHHHHHHHHHHSSSEEEEEEEBGGGST
T ss_pred ccc---cCCceEeeehHHHHHhhcccccchhHHHHHHHHHHhcccchHHHHHHHHHHHHhhhcccCCcEEEEecccccCc
Confidence 332 367999999999999877654433200 01124456666777554 356889999999999999
Q ss_pred CCCccCCCCcCceeEEEEEeCCcceeeeceeccCCHHHHHHHHHHcCCCCCC----CcchHHHhhcCCCCccceecchhH
Q psy8087 352 FYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGIDPAP----YYWYTDQRKYGSTPHGGYGLGLER 427 (658)
Q Consensus 352 fy~~~~~~~~~~~~~fdL~~~G~~Ei~~G~~r~~d~~~~~~~~~~~g~~~~~----~~~yl~a~~~G~pP~gG~GiGidR 427 (658)
||++.+++++++++|||||++| +||||||+|+|||++|++||++++++++. ++|||+|+++|||||||||||+||
T Consensus 235 f~~~~~~~~~~~~~~fdl~~~g-~Ei~~G~~r~~d~~~l~~r~~~~~~~~~~~~~~~~~yl~~~~~G~pp~~G~glG~eR 313 (335)
T PF00152_consen 235 FYKPPNDDDPGVAERFDLYIPG-GEIANGSQREHDPEELRERFEEQGIDPEEEMPIDEWYLEALKYGMPPHGGFGLGLER 313 (335)
T ss_dssp TTBBBSSSTTTBBSEEEEEETT-EEEEEEEEB--SHHHHHHHHHHTTHHGGGSHHHGHHHHHHHHTT--SEEEEEEEHHH
T ss_pred ccccccccccccccceeEEEeC-EEEehHHhhhhHHHHHHHHhhhcccccccccchhHhHHHhhhccCcccCcceehHHH
Confidence 9887776666999999999999 59999999999999999999999988777 999999999999999999999999
Q ss_pred HHHHHhcccCcchhhHHHHH
Q psy8087 428 VLCWLLNQYHVRDKYQLIAK 447 (658)
Q Consensus 428 L~m~l~g~~~Irdvi~f~~k 447 (658)
|+|+++|.+|||||++||..
T Consensus 314 Lvm~l~g~~~Irdv~~FPr~ 333 (335)
T PF00152_consen 314 LVMLLLGLKNIRDVIPFPRD 333 (335)
T ss_dssp HHHHHHT-SSGGGGSSS-CB
T ss_pred HHHHHcCCCcHHheecCCCC
Confidence 99999999999999999853
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry includes the asparagine, aspartic acid and lysine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1N9W_B 1BBU_A 1BBW_A 4EX5_B 3E9I_A 3E9H_C 3A74_C 1NNH_A 3M4P_C 3M4Q_B .... |
| >KOG2411|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-70 Score=575.81 Aligned_cols=379 Identities=22% Similarity=0.285 Sum_probs=297.5
Q ss_pred ccccccccccCCCccCCcEEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccchh--hhhhcCCCccEEEEEEEeE
Q psy8087 54 PCEVGYITCEGPAGYIITNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILCQT--EHALLLSTESSVQFRGRIE 131 (658)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~~~--~~~~~l~~es~V~v~G~l~ 131 (658)
++.++++... .+|+.|.++|||...|++ |.+.|..|||.+|.||+.++.+.... .....++.||+|.|.|++.
T Consensus 35 t~~~~el~~~----~vg~kv~l~GWl~~~~~~-k~~~F~~LRD~~G~vq~lls~~s~~l~~~~~~~v~~e~vv~v~gtvv 109 (628)
T KOG2411|consen 35 TSLCGELSVN----DVGKKVVLCGWLELHRVH-KMLTFFNLRDAYGIVQQLLSPDSFPLAQKLENDVPLEDVVQVEGTVV 109 (628)
T ss_pred hccchhhccC----ccCCEEEEeeeeeeeecc-ccceEEEeeccCcceEEEecchhhhHHhcccCCCChhheEeeeeeEe
Confidence 4455566443 789999999999999988 57999999999999999998775421 1123589999999999998
Q ss_pred eCCCCc---------cceEe-----cC-------------------------CCceeEEeecCCccc---------CchH
Q psy8087 132 KVPEEN---------MKVQL-----IH-------------------------PSSYAIVWLGDLKQG---------GYPP 163 (658)
Q Consensus 132 ~~p~~~---------~d~~l-----~~-------------------------p~~R~l~lr~~~~~~---------~~iR 163 (658)
..|... +|+.. .| +..||||||.+.++. ..||
T Consensus 110 ~Rp~~sin~km~tg~vev~~e~~~vln~~~~~~p~~v~df~~ld~~~~er~rl~~RyldLR~~kmq~nLrlRS~~v~~iR 189 (628)
T KOG2411|consen 110 SRPNESINSKMKTGFVEVVAEKVEVLNPVNKKLPFEVTDFKELDDLAGERIRLRFRYLDLRRPKMQNNLRLRSNVVKKIR 189 (628)
T ss_pred cccccccCccccccceEEEeeeeEEecCccCCCccchhhhhhhhccccccccchhhhhhhccHHHHHHHHHHHHHHHHHH
Confidence 775321 11110 01 135999999988765 4899
Q ss_pred HHhhhC-CcEEEcCCccccccCCCCccce-eeccC-CcceeeccCHHHHHHHhcc-cCCcEEEEeeeeecCCCCCccCcc
Q psy8087 164 EVSLAN-GIAKVTPPTLVQTQVEGGSTLF-SLNFF-GEPAYLTQSSQLYLETCLP-ALGDVYCIAQSYRAENSRTRRHLA 239 (658)
Q Consensus 164 ~fl~~~-gF~EV~TPiL~~~~~eG~~~~F-~~~~~-~~~~~L~~Spqlylk~li~-g~~rvfeI~~~FR~E~~~~~rHl~ 239 (658)
+||.++ ||+||+||+|.+.++|||++.. ++.-- |++|.|.||||+|||+||+ |++|||||++|||+|+++.+|+ |
T Consensus 190 ~yl~n~~GFvevETPtLFkrTPgGA~EFvVPtr~~~g~FYaLpQSPQQfKQlLMvsGidrYyQiARCfRDEdlR~DRQ-P 268 (628)
T KOG2411|consen 190 RYLNNRHGFVEVETPTLFKRTPGGAREFVVPTRTPRGKFYALPQSPQQFKQLLMVSGIDRYYQIARCFRDEDLRADRQ-P 268 (628)
T ss_pred HHHhhhcCeeeccCcchhccCCCccceeecccCCCCCceeecCCCHHHHHHHHHHhchhhHHhHHhhhcccccCcccC-C
Confidence 999875 7999999999999997776633 33322 8999999999999999998 7999999999999999999999 8
Q ss_pred eeeeeeeEeecCCHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCCCcceeeHHHHHHHHHHcCCCCCCCCCc-
Q psy8087 240 EYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGDLVRQMNPNFEPPARPFLRMNYADAIEYLRKHEIRKPDNTEY- 318 (658)
Q Consensus 240 EFt~lE~e~a~~d~~~~m~~~e~li~~i~~~~~~~~~~~~~~~~~~~~~~~~pf~rit~~ea~~~l~~~g~~~~~~~~~- 318 (658)
||||+|+||+|.|.+|||+++|+||+++|....+. .+..||+||||.|||.. +|+|+||.++.
T Consensus 269 EFTQvD~EMsF~~~~dim~liEdll~~~ws~~k~~-------------~l~~PF~riTY~~Am~~---YG~DKPD~Rf~l 332 (628)
T KOG2411|consen 269 EFTQVDMEMSFTDQEDIMKLIEDLLRYVWSEDKGI-------------QLPVPFPRITYADAMDK---YGSDKPDTRFPL 332 (628)
T ss_pred cceeeeeEEeccCHHHHHHHHHHHHHHhchhhcCC-------------CCCCCcccccHHHHHHH---hCCCCCcccCCc
Confidence 99999999999999999999999999999876542 13579999999999986 79999986420
Q ss_pred -------------------------------------------------------------------ccCCCCCCc-hh-
Q psy8087 319 -------------------------------------------------------------------EFGEDIPEM-PE- 329 (658)
Q Consensus 319 -------------------------------------------------------------------~~g~~l~~~-~e- 329 (658)
.|-+.+..+ .|
T Consensus 333 ~l~dv~~~~~~~~~~~~~~d~l~~~~~vv~~~~~~~~s~~~~rk~~e~~~~~~~~~~~f~~~~~~~~~w~~~~~~l~~e~ 412 (628)
T KOG2411|consen 333 KLKDVSESISKSFEEALLSDGLISVEIVVLGAKKYSNSNYKKRKIYESLGKSGFVGLPFPIEHDANKNWFKKFSSLTDEA 412 (628)
T ss_pred EecchHHhhhhhhhhhhhcCCccceEEEEeccccccchhhHHhHHHHHHhhcccccceeeeeccchhhhhhhchhhccch
Confidence 000000000 00
Q ss_pred --------------------------------h-------hhhccc-----CCcEEEEeCCC-------------CCCCC
Q psy8087 330 --------------------------------R-------KMTDQI-----NRPIMLCRFPA-------------DIKSF 352 (658)
Q Consensus 330 --------------------------------~-------~l~~~~-----~~p~fi~~~P~-------------~~~pf 352 (658)
+ .+...+ ....||+|||. .++||
T Consensus 413 ~~~el~~~~~l~~~Div~~~~g~~~~~~~~LgrlRL~l~~l~~~~l~d~~~~~~lWVvDFPLF~p~~E~~q~L~StHHPF 492 (628)
T KOG2411|consen 413 VAIELIKQLGLAEGDIVLLCVGPKVSVNTPLGRLRLVLQDLLVKNLRDKSKFSFLWVVDFPLFSPWEEKNQRLESTHHPF 492 (628)
T ss_pred HHHHHHHHhCCCCCCEEEEeccCCccCCCchHHHHHHHHHHHhccccccccceEEEEEeccccCccccCCceeccccCCC
Confidence 0 000111 13579999995 48899
Q ss_pred CCccCCCCc---------CceeEEEEEeCCcceeeeceeccCCHHHHHHHHHHc-CCCCCCC--cchHHHhhcCCCCccc
Q psy8087 353 YMSKCPENP---------ALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKRE-GIDPAPY--YWYTDQRKYGSTPHGG 420 (658)
Q Consensus 353 y~~~~~~~~---------~~~~~fdL~~~G~~Ei~~G~~r~~d~~~~~~~~~~~-g~~~~~~--~~yl~a~~~G~pP~gG 420 (658)
+.++++|- -...+|||++||+ ||+|||.|+||++.|+..|+.. +++.+.+ ++.|+|+.+|+|||||
T Consensus 493 -TaP~~~Di~~L~s~p~~~rgqhYDlV~NGv-ElGGGSiRIhn~diQr~vLe~iLk~p~~~~s~gHLL~ALd~GaPPHGG 570 (628)
T KOG2411|consen 493 -TAPHPKDIDLLESAPEKIRGQHYDLVVNGV-ELGGGSIRIHNPDIQRYVLEDILKIPEDAESKGHLLNALDMGAPPHGG 570 (628)
T ss_pred -CCCChhhhhHhhcCchhhhcceeeeEEccE-eecCceeEecCHHHHHHHHHHHhcCchhhhhHHHHHHHhhcCCCCCCc
Confidence 45666542 2467999999998 9999999999999999999975 4444334 4899999999999999
Q ss_pred eecchhHHHHHHhcccCcchhhHHHHHhhhhhhhhh
Q psy8087 421 YGLGLERVLCWLLNQYHVRDKYQLIAKAQLKKVSKL 456 (658)
Q Consensus 421 ~GiGidRL~m~l~g~~~Irdvi~f~~k~~lk~~~K~ 456 (658)
+++|+|||+|+|||..||||||+||+....++....
T Consensus 571 iAlGlDRlvaml~~a~sIRDVIAFPKt~~G~Dlls~ 606 (628)
T KOG2411|consen 571 IALGLDRLVAMLTGAPSIRDVIAFPKTTTGADLLSN 606 (628)
T ss_pred eeecHHHHHHHHcCCCchheeeeccccCCccccccC
Confidence 999999999999999999999999987777665543
|
|
| >TIGR00462 genX lysyl-tRNA synthetase-like protein GenX | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-70 Score=574.58 Aligned_cols=262 Identities=21% Similarity=0.378 Sum_probs=228.9
Q ss_pred CchHHHhhhCCcEEEcCCccccc-cCCCCccceeeccCC-----cceeeccCHHHHHHHhcc-cCCcEEEEeeeeecCCC
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQT-QVEGGSTLFSLNFFG-----EPAYLTQSSQLYLETCLP-ALGDVYCIAQSYRAENS 232 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~-~~eG~~~~F~~~~~~-----~~~~L~~Spqlylk~li~-g~~rvfeI~~~FR~E~~ 232 (658)
+++|+||.++||+||+||+|+++ ..++++++|+++||+ +++||+||||||||++++ |++||||||||||||++
T Consensus 9 ~~ir~~f~~~gF~EV~TP~l~~~~~~e~~~~~F~~~y~~~~~~~~~~yL~~Spql~lk~ll~~g~~rVfeigp~FRaE~~ 88 (304)
T TIGR00462 9 AAIRAFFAERGVLEVETPLLSPAPVTDPHLDAFATEFLGPDGEGRPLYLQTSPEYAMKRLLAAGSGPIFQICKVFRNGER 88 (304)
T ss_pred HHHHHHHHHCCCEEEECCeEecCCCCCcCCcceeeeccCCCCCCcceeeecCHHHHHHHHHhccCCCEEEEcCceeCCCC
Confidence 68999999999999999999876 466788999998876 699999999999998877 79999999999999999
Q ss_pred CCccCcceeeeeeeEeecCCHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCCCcceeeHHHHHHHHHHcCCCC
Q psy8087 233 RTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGDLVRQMNPNFEPPARPFLRMNYADAIEYLRKHEIRK 312 (658)
Q Consensus 233 ~~~rHl~EFt~lE~e~a~~d~~~~m~~~e~li~~i~~~~~~~~~~~~~~~~~~~~~~~~pf~rit~~ea~~~l~~~g~~~ 312 (658)
+ +||||||||||||++|.||+|+|+++|+||++++.. ++.||++|||.||++.+ .|++.
T Consensus 89 ~-~rHl~EFtmLE~e~~~~d~~d~m~~~e~li~~i~~~------------------~~~~~~~it~~ea~~~~--~~~~~ 147 (304)
T TIGR00462 89 G-RRHNPEFTMLEWYRPGFDYHDLMDEVEALLQELLGD------------------PFAPWERLSYQEAFLRY--AGIDP 147 (304)
T ss_pred C-CCcccHHHhHHHHHHcCCHHHHHHHHHHHHHHHHHh------------------cCCCcEEEEHHHHHHHH--hCCCc
Confidence 5 699999999999999999999999999999999874 13699999999998643 23322
Q ss_pred CCC-------------CCcccCCCCCCchhhhhh----ccc--CCcEEEEeCCCCCCCCCCccCCCCcCceeEEEEEeCC
Q psy8087 313 PDN-------------TEYEFGEDIPEMPERKMT----DQI--NRPIMLCRFPADIKSFYMSKCPENPALTESVDVLFPN 373 (658)
Q Consensus 313 ~~~-------------~~~~~g~~l~~~~e~~l~----~~~--~~p~fi~~~P~~~~pfy~~~~~~~~~~~~~fdL~~~G 373 (658)
... ....++.++++++|++++ +++ ++|+||+|||.+++|| ++.+++||++++|||||++|
T Consensus 148 ~~~~~~~~~~~~~~~g~~~~~~~d~~~~~e~~l~~~ie~~~~~~~p~fi~~yP~~~~~~-~~~~~~~~~~~~rfdl~~~G 226 (304)
T TIGR00462 148 LTASLDELAAAAAAHGVRASEEDDRDDLLDLLFSEKVEPHLGFGRPTFLYDYPASQAAL-ARISPDDPRVAERFELYIKG 226 (304)
T ss_pred ccCCHHHHHHHHHHcCCCCCCCCChhHHHHHHHHHHHHHhcCCCCCEEEEcCccccCcC-ccccCCCCCeeEEEEEEECC
Confidence 110 012345677777777664 444 6799999999999999 57888999999999999999
Q ss_pred cceeeeceeccCCHHHHHHHHHH-------cCCCCCCC-cchHHHhhcCCCCccceecchhHHHHHHhcccCcchhhHH
Q psy8087 374 VGEVIGGSMRIWDPEELLAGYKR-------EGIDPAPY-YWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRDKYQL 444 (658)
Q Consensus 374 ~~Ei~~G~~r~~d~~~~~~~~~~-------~g~~~~~~-~~yl~a~~~G~pP~gG~GiGidRL~m~l~g~~~Irdvi~f 444 (658)
+ ||+|||+|+|||.+|++||++ .|+++..+ +|||+|++||||||||||||||||+|+++|.+||||||+|
T Consensus 227 ~-Ei~~G~~el~d~~~~~~r~~~~~~~~~~~g~~~~~~d~~yl~~~~~G~pP~~G~GiGieRL~m~l~g~~~Ir~vi~F 304 (304)
T TIGR00462 227 L-ELANGFHELTDAAEQRRRFEADNAERKALGLPRYPLDERFLAALEAGLPECSGVALGVDRLLMLALGADSIDDVLAF 304 (304)
T ss_pred E-EEeeceeecCCHHHHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHcCCCCCCceEEcHHHHHHHHhCCCchhhcccC
Confidence 8 999999999999999999977 58887777 7899999999999999999999999999999999999987
|
Many Gram-negative bacteria have a protein closely homologous to the C-terminal region of lysyl-tRNA synthetase (LysS). Multiple sequence alignment of these proteins with the homologous regions of collected LysS proteins shows that these proteins form a distinct set rather than just similar truncations of LysS. The protein is termed GenX after its designation in E. coli. Interestingly, genX often is located near a homolog of lysine-2,3-aminomutase. Its function is unknown. |
| >cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-69 Score=577.65 Aligned_cols=279 Identities=23% Similarity=0.375 Sum_probs=239.0
Q ss_pred CchHHHhhhCCcEEEcCCccccccCCCCccceee--ccCCcceeeccCHHHHHHHhcc-cCCcEEEEeeeeecCCCCCcc
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQVEGGSTLFSL--NFFGEPAYLTQSSQLYLETCLP-ALGDVYCIAQSYRAENSRTRR 236 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~eG~~~~F~~--~~~~~~~~L~~Spqlylk~li~-g~~rvfeI~~~FR~E~~~~~r 236 (658)
++||+||.++||+||+||+|+++.+++++++|.+ ++|+.++||+||||||||++++ |++|||+||||||||+++ +|
T Consensus 16 ~~iR~ff~~~gf~EV~TP~L~~~~~~~~~~~f~~~~~~~~~~~yL~~Spql~~k~ll~~g~~~vf~i~~~FR~E~~~-~r 94 (329)
T cd00775 16 SYIRKFLDDRGFLEVETPMLQPIAGGAAARPFITHHNALDMDLYLRIAPELYLKRLIVGGFERVYEIGRNFRNEGID-LT 94 (329)
T ss_pred HHHHHHHHHCCCEEEECCccccCCCCccceeEEeccCCCCcceeeccCHHHHHHHHHhcCCCcEEEEeccccCCCCC-CC
Confidence 6999999999999999999986655555788966 7899999999999999999986 899999999999999996 69
Q ss_pred CcceeeeeeeEeecCCHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCCCcceeeHHHHHHHHHHcCCCCCCCC
Q psy8087 237 HLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGDLVRQMNPNFEPPARPFLRMNYADAIEYLRKHEIRKPDNT 316 (658)
Q Consensus 237 Hl~EFt~lE~e~a~~d~~~~m~~~e~li~~i~~~~~~~~~~~~~~~~~~~~~~~~pf~rit~~ea~~~l~~~g~~~~~~~ 316 (658)
||||||||||||+|+|++|+|+++|+||+++++.+.+... +...+.++ ..+.||+|+||.||++.+ .|++.....
T Consensus 95 Hl~EFt~le~e~~~~~~~~~m~~~e~li~~i~~~~~~~~~--~~~~~~~~-~~~~pf~rity~eA~~~~--~g~~~~~~~ 169 (329)
T cd00775 95 HNPEFTMIEFYEAYADYNDMMDLTEDLFSGLVKKINGKTK--IEYGGKEL-DFTPPFKRVTMVDALKEK--TGIDFPELD 169 (329)
T ss_pred CCCceEEEEEeeecCCHHHHHHHHHHHHHHHHHHHhCCce--eecCCccc-cCCCCceEEEHHHHHHHH--hCCCccccc
Confidence 9999999999999999999999999999999998876532 11122111 124699999999999975 465432100
Q ss_pred ---------------------CcccCCCCCCchhhhhhcccCCcEEEEeCCCCCCCCCCccCCCCcCceeEEEEEeCCcc
Q psy8087 317 ---------------------EYEFGEDIPEMPERKMTDQINRPIMLCRFPADIKSFYMSKCPENPALTESVDVLFPNVG 375 (658)
Q Consensus 317 ---------------------~~~~g~~l~~~~e~~l~~~~~~p~fi~~~P~~~~pfy~~~~~~~~~~~~~fdL~~~G~~ 375 (658)
...|+..++.++++++++++++|+||+|||++++|| ++.+++||++++|||||++|+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ve~~~~~p~fi~~yP~~~~~f-~~~~~~~~~~~~rfdl~~~G~- 247 (329)
T cd00775 170 LEQPEELAKLLAKLIKEKIEKPRTLGKLLDKLFEEFVEPTLIQPTFIIDHPVEISPL-AKRHRSNPGLTERFELFICGK- 247 (329)
T ss_pred ccCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhccccCCCEEEECCChHhCcC-cCcCCCCCCeeEEEEeEECCE-
Confidence 113455566777888999999999999999999999 567788999999999999998
Q ss_pred eeeeceeccCCHHHHHHHHHHc------CCCCCC--CcchHHHhhcCCCCccceecchhHHHHHHhcccCcchhhHHHH
Q psy8087 376 EVIGGSMRIWDPEELLAGYKRE------GIDPAP--YYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRDKYQLIA 446 (658)
Q Consensus 376 Ei~~G~~r~~d~~~~~~~~~~~------g~~~~~--~~~yl~a~~~G~pP~gG~GiGidRL~m~l~g~~~Irdvi~f~~ 446 (658)
||+|||+|+|||.+|+++|+++ +.+++. ++|||+|++||||||||||||+|||+|+++|.+|||||++||.
T Consensus 248 Ei~~G~~el~d~~e~~~r~~~~~~~~~~~~~~~~~~~~~yl~a~~~G~pp~~G~glGleRL~m~~~g~~~Irdv~~Fp~ 326 (329)
T cd00775 248 EIANAYTELNDPFDQRERFEEQAKQKEAGDDEAMMMDEDFVTALEYGMPPTGGLGIGIDRLVMLLTDSNSIRDVILFPA 326 (329)
T ss_pred EEEcccchhCCHHHHHHHHHHHHHHHHcCCCccccchHHHHHHHHCCCCCCCcEEecHHHHHHHHcCCCcHHhcccCCC
Confidence 9999999999999999999874 666643 6899999999999999999999999999999999999999963
|
Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. |
| >cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-68 Score=550.81 Aligned_cols=251 Identities=26% Similarity=0.464 Sum_probs=230.6
Q ss_pred CchHHHhhhCCcEEEcCCccccccCCCCccceeeccC--CcceeeccCHHHHHHHhcc-cCCcEEEEeeeeecCCCCCcc
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQVEGGSTLFSLNFF--GEPAYLTQSSQLYLETCLP-ALGDVYCIAQSYRAENSRTRR 236 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~eG~~~~F~~~~~--~~~~~L~~Spqlylk~li~-g~~rvfeI~~~FR~E~~~~~r 236 (658)
+++|+||.++||+||+||+|+++.+|+++++|+++|+ |.++||++|||+|+|++++ |++|||+||||||+|+ .+.+
T Consensus 9 ~~ir~~f~~~gf~ev~tP~l~~~~~~~~~~~f~~~~~~~g~~~~L~~Spql~~~~~~~~~~~~vf~i~~~fR~e~-~~~~ 87 (269)
T cd00669 9 KAIRDFMDDRGFLEVETPMLQKITGGAGARPFLVKYNALGLDYYLRISPQLFKKRLMVGGLDRVFEINRNFRNED-LRAR 87 (269)
T ss_pred HHHHHHHHHCCCEEEECCEEeccCCccccceEEeeecCCCCcEEeecCHHHHHHHHHhcCCCcEEEEecceeCCC-CCCC
Confidence 5899999999999999999998888888999999888 9999999999999999886 7999999999999995 5779
Q ss_pred CcceeeeeeeEeecCCHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCCCcceeeHHHHHHHHHHcCCCCCCCC
Q psy8087 237 HLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGDLVRQMNPNFEPPARPFLRMNYADAIEYLRKHEIRKPDNT 316 (658)
Q Consensus 237 Hl~EFt~lE~e~a~~d~~~~m~~~e~li~~i~~~~~~~~~~~~~~~~~~~~~~~~pf~rit~~ea~~~l~~~g~~~~~~~ 316 (658)
|++||||||+||+|+|++|+|+++|+||+++++.+.+.+...+..... .++.||+||||.||++++.
T Consensus 88 hl~EF~~le~e~~~~~~~dvm~~~e~lv~~i~~~~~~~~~~~~~~~~~---~~~~~~~rit~~ea~~~~~---------- 154 (269)
T cd00669 88 HQPEFTMMDLEMAFADYEDVIELTERLVRHLAREVLGVTAVTYGFELE---DFGLPFPRLTYREALERYG---------- 154 (269)
T ss_pred cccceeEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcccccccccccc---ccCCCceEeeHHHHHHHhC----------
Confidence 999999999999999999999999999999999998765443332222 2457999999999998751
Q ss_pred CcccCCCCCCchhhhhhcccCCcEEEEeCCCCCCCCCCccCCCCcCceeEEEEEeCCcceeeeceeccCCHHHHHHHHHH
Q psy8087 317 EYEFGEDIPEMPERKMTDQINRPIMLCRFPADIKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKR 396 (658)
Q Consensus 317 ~~~~g~~l~~~~e~~l~~~~~~p~fi~~~P~~~~pfy~~~~~~~~~~~~~fdL~~~G~~Ei~~G~~r~~d~~~~~~~~~~ 396 (658)
.|+||+|||...+|||++.++++|++++||||+++|+ ||+|||+|+||+++|+++|++
T Consensus 155 ---------------------~p~fi~d~P~~~~~fy~~~~~~~~~~~~~fdl~~~g~-Ei~~G~~r~~d~~~l~~~~~~ 212 (269)
T cd00669 155 ---------------------QPLFLTDYPAEMHSPLASPHDVNPEIADAFDLFINGV-EVGNGSSRLHDPDIQAEVFQE 212 (269)
T ss_pred ---------------------CceEEECCCcccCCCCCCcCCCCCCeEEEEEEeeCCE-EEeeCchhcCCHHHHHHHHHH
Confidence 5899999999999999999888999999999999996 999999999999999999999
Q ss_pred cCCCCC----CCcchHHHhhcCCCCccceecchhHHHHHHhcccCcchhhHHHH
Q psy8087 397 EGIDPA----PYYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRDKYQLIA 446 (658)
Q Consensus 397 ~g~~~~----~~~~yl~a~~~G~pP~gG~GiGidRL~m~l~g~~~Irdvi~f~~ 446 (658)
++++++ .|+|||+|++||+|||||||||||||+|+++|.+|||||++||.
T Consensus 213 ~~~~~~~~~~~~~~yl~a~~~G~pp~~G~glGieRL~m~~~g~~~Irdv~~FPr 266 (269)
T cd00669 213 QGINKEAGMEYFEFYLKALEYGLPPHGGLGIGIDRLIMLMTNSPTIREVIAFPK 266 (269)
T ss_pred hCcChhhccccHHHHHHHHHcCCCCCceEeeHHHHHHHHHhCCCcHHHcccCCC
Confidence 999988 79999999999999999999999999999999999999999984
|
This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. |
| >PRK09350 poxB regulator PoxA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-63 Score=524.35 Aligned_cols=258 Identities=21% Similarity=0.327 Sum_probs=217.7
Q ss_pred CchHHHhhhCCcEEEcCCccccccCCCC-ccceeeccC------CcceeeccCHHHHHHHhcc-cCCcEEEEeeeeecCC
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQVEGG-STLFSLNFF------GEPAYLTQSSQLYLETCLP-ALGDVYCIAQSYRAEN 231 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~eG~-~~~F~~~~~------~~~~~L~~Spqlylk~li~-g~~rvfeI~~~FR~E~ 231 (658)
++||+||.++||+||+||+|+.....|+ ..+|.++|+ |..+||+||||+|+|++++ |++|||+||||||||+
T Consensus 13 ~~ir~~f~~~gf~EV~TP~l~~~~~~~~~~~~f~~~y~~~~~~~~~~~~L~~SPe~~~kr~la~~~~rvf~i~~~FR~e~ 92 (306)
T PRK09350 13 AEIRRFFADRGVLEVETPILSQATVTDIHLVPFETRFVGPGASQGKTLWLMTSPEYHMKRLLAAGSGPIFQICKSFRNEE 92 (306)
T ss_pred HHHHHHHHHCCCEEEECCeEecccCCCccCCceeeeeccccccCCcceEEecCHHHHHHHHhhccccceEEecceeecCC
Confidence 6899999999999999999975544443 457877777 7899999999999999887 7999999999999999
Q ss_pred CCCccCcceeeeeeeEeecCCHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCCCcceeeHHHHHHHH------
Q psy8087 232 SRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGDLVRQMNPNFEPPARPFLRMNYADAIEYL------ 305 (658)
Q Consensus 232 ~~~~rHl~EFt~lE~e~a~~d~~~~m~~~e~li~~i~~~~~~~~~~~~~~~~~~~~~~~~pf~rit~~ea~~~l------ 305 (658)
+ +.||+|||||||||++|+|++|+|+++|+||++++.. .||+++||.||++.+
T Consensus 93 ~-~~~H~~EFt~lE~y~~~~d~~dlm~~~E~li~~i~~~--------------------~~~~~i~~~eaf~~~~g~~~~ 151 (306)
T PRK09350 93 A-GRYHNPEFTMLEWYRPHYDMYRLMNEVDDLLQQVLDC--------------------EPAESLSYQQAFLRYLGIDPL 151 (306)
T ss_pred C-CCCCCcHHHhhhhhhhCCCHHHHHHHHHHHHHHHHhc--------------------CCceEEEHHHHHHHHhCCCCC
Confidence 9 7799999999999999999999999999999988641 478999999988643
Q ss_pred -----------HHcCC-CCCCCCCcccCCCCCCchhhhhhcccC--CcEEEEeCCCCCCCCCCccCCCCcCceeEEEEEe
Q psy8087 306 -----------RKHEI-RKPDNTEYEFGEDIPEMPERKMTDQIN--RPIMLCRFPADIKSFYMSKCPENPALTESVDVLF 371 (658)
Q Consensus 306 -----------~~~g~-~~~~~~~~~~g~~l~~~~e~~l~~~~~--~p~fi~~~P~~~~pfy~~~~~~~~~~~~~fdL~~ 371 (658)
.+.|+ +... ....|+..++.++..++++.++ .|+||+|||.+++|| ++++++||++++|||||+
T Consensus 152 ~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~l~~~~ve~~l~~~~p~fi~~yP~~~~~~-a~~~~~~~~~~~rfdl~i 229 (306)
T PRK09350 152 SADKTQLREVAAKLGLSNIAD-EEEDRDTLLQLLFTFGVEPNIGKEKPTFVYHFPASQAAL-AKISTEDHRVAERFEVYF 229 (306)
T ss_pred cCCHHHHHHHHHHcCCCCcCC-CCCCHHHHHHHHHHHHHHHhcCCCCCEEEEcCccccCcc-ccccCCCCCeeEEEEEEE
Confidence 22232 0000 0112223333444566777764 599999999999998 678889999999999999
Q ss_pred CCcceeeeceeccCCHHHHHHHHHH-------cCCCCCCC-cchHHHhhcCCCCccceecchhHHHHHHhcccCcchh
Q psy8087 372 PNVGEVIGGSMRIWDPEELLAGYKR-------EGIDPAPY-YWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRDK 441 (658)
Q Consensus 372 ~G~~Ei~~G~~r~~d~~~~~~~~~~-------~g~~~~~~-~~yl~a~~~G~pP~gG~GiGidRL~m~l~g~~~Irdv 441 (658)
+|+ ||+|||+|+|||++|++||++ .|+++..+ +|||+|++||||||||||||||||+|+++|.+|||||
T Consensus 230 ~G~-Ei~nG~~el~d~~~~~~r~~~~~~~~~~~g~~~~~~d~~~l~a~~~G~pp~~G~giGidRL~m~~~g~~~Irdv 306 (306)
T PRK09350 230 KGI-ELANGFHELTDAREQRQRFEQDNRKRAARGLPQQPIDENLIAALEAGLPDCSGVALGVDRLIMLALGAESISEV 306 (306)
T ss_pred CCE-EEecchhhcCCHHHHHHHHHHHHHHHHhCCCCcccCcHHHHHHHHcCCCCCCceEecHHHHHHHHcCCCCcccC
Confidence 998 999999999999999999985 57777777 5799999999999999999999999999999999997
|
|
| >cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-62 Score=511.90 Aligned_cols=257 Identities=27% Similarity=0.452 Sum_probs=210.4
Q ss_pred CchHHHhhhCCcEEEcCCccccccCCCCccceeeccC---CcceeeccCHHHHHHHhcc-cCCcEEEEeeeeecCCCCCc
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQVEGGSTLFSLNFF---GEPAYLTQSSQLYLETCLP-ALGDVYCIAQSYRAENSRTR 235 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~eG~~~~F~~~~~---~~~~~L~~Spqlylk~li~-g~~rvfeI~~~FR~E~~~~~ 235 (658)
++||+||.++||+||+||+|++++++|++. |.+.++ +..+||+||||||||++++ |++|||+||||||+|++++.
T Consensus 9 ~~iR~f~~~~gfiEV~TP~L~~~~~~g~~~-f~~~~~~~~~~~~~L~~Spql~lk~ll~~g~~~v~~i~~~fR~e~~~~~ 87 (280)
T cd00777 9 KAIRNFLDEQGFVEIETPILTKSTPEGARD-FLVPSRLHPGKFYALPQSPQLFKQLLMVSGFDRYFQIARCFRDEDLRAD 87 (280)
T ss_pred HHHHHHHHHCCCEEEeCCeeecCCCCCCCC-ceeccccCCCceeecccCHHHHHHHHHhcCcCcEEEeccceeCCCCCCC
Confidence 689999999999999999999888877654 766664 4567799999999999886 79999999999999999986
Q ss_pred cCcceeeeeeeEeecCCHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCCCcceeeHHHHHHHHHHcCCCCCCC
Q psy8087 236 RHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGDLVRQMNPNFEPPARPFLRMNYADAIEYLRKHEIRKPDN 315 (658)
Q Consensus 236 rHl~EFt~lE~e~a~~d~~~~m~~~e~li~~i~~~~~~~~~~~~~~~~~~~~~~~~pf~rit~~ea~~~l~~~g~~~~~~ 315 (658)
|| +||||||||++|+|++|+|+++|+||++++..+.+. ..+.||+||||.||++.+ |++
T Consensus 88 r~-~Ef~~~e~e~~~~~~~dlm~~~e~li~~i~~~~~~~-------------~~~~p~~rity~eA~~~~---~~~---- 146 (280)
T cd00777 88 RQ-PEFTQIDIEMSFVDQEDIMSLIEGLLKYVFKEVLGV-------------ELTTPFPRMTYAEAMERY---GFK---- 146 (280)
T ss_pred cc-ceeEEeEeeeccCCHHHHHHHHHHHHHHHHHHHhCC-------------CCCCCCceeeHHHHHHHh---CCC----
Confidence 66 599999999999999999999999999999888653 124799999999999863 432
Q ss_pred CCcccCCCCCCchhhhhhcccCCcEEEEe-CCCCC---CCCCCccCCCCcCceeEEEEEeCCcceeeeceeccCCHHHHH
Q psy8087 316 TEYEFGEDIPEMPERKMTDQINRPIMLCR-FPADI---KSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELL 391 (658)
Q Consensus 316 ~~~~~g~~l~~~~e~~l~~~~~~p~fi~~-~P~~~---~pfy~~~~~~~~~~~~~fdL~~~G~~Ei~~G~~r~~d~~~~~ 391 (658)
..|+.++... +...+ ..+++++++ ||... .|+ ++.++++ ++++|||||++|+ ||+|||+|+|||++|+
T Consensus 147 --~~~~~d~~~~-~~~~~--~~~~~~~~~pf~~~~~~~~~~-~~~~~~~-~~~~~fdl~~~G~-Ei~~G~~r~~d~~~l~ 218 (280)
T cd00777 147 --FLWIVDFPLF-EWDEE--EGRLVSAHHPFTAPKEEDLDL-LEKDPED-ARAQAYDLVLNGV-ELGGGSIRIHDPDIQE 218 (280)
T ss_pred --CccccCCccc-CChhH--HHHHHHHhCCCcCCCcccchh-hhcCCcc-CeeEEEEEEeCCE-EEccCEEEcCCHHHHH
Confidence 2344443311 10001 122344444 44322 223 4455555 7999999999997 9999999999999999
Q ss_pred HHHHHcCCCC----CCCcchHHHhhcCCCCccceecchhHHHHHHhcccCcchhhHHHH
Q psy8087 392 AGYKREGIDP----APYYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRDKYQLIA 446 (658)
Q Consensus 392 ~~~~~~g~~~----~~~~~yl~a~~~G~pP~gG~GiGidRL~m~l~g~~~Irdvi~f~~ 446 (658)
+||+++|+++ +.|+|||+|++||||||||||||||||+|++||.+|||||++||.
T Consensus 219 ~r~~~~~~~~~~~~~~~~~yl~a~~~G~pP~~G~giGidRL~m~~~g~~~Irdv~~FPr 277 (280)
T cd00777 219 KVFEILGLSEEEAEEKFGFLLEAFKYGAPPHGGIALGLDRLVMLLTGSESIRDVIAFPK 277 (280)
T ss_pred HHHHHcCCChhhhhhhHHHHHHHHHCCCCCCCeEeEhHHHHHHHHcCCCchheEeecCC
Confidence 9999999883 457999999999999999999999999999999999999999984
|
Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain. |
| >COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-55 Score=439.03 Aligned_cols=262 Identities=18% Similarity=0.305 Sum_probs=218.9
Q ss_pred CchHHHhhhCCcEEEcCCccccccCCC-CccceeeccC------CcceeeccCHHHHHHHhcc-cCCcEEEEeeeeecCC
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQVEG-GSTLFSLNFF------GEPAYLTQSSQLYLETCLP-ALGDVYCIAQSYRAEN 231 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~eG-~~~~F~~~~~------~~~~~L~~Spqlylk~li~-g~~rvfeI~~~FR~E~ 231 (658)
++||.||.++||+||+||.|+.+.... .-.+|.++|+ ++++||+.|||+++|+|++ |-+++||||+||||++
T Consensus 24 ~~iR~FF~erg~lEVeTp~Ls~a~vtd~hL~~F~Te~~~~~~~~~~~l~L~TSPEy~mKrLLAag~~~ifql~kvfRN~E 103 (322)
T COG2269 24 AAIRRFFAERGVLEVETPALSVAPVTDIHLHPFETEFLGPGGAKGKPLWLHTSPEYHMKRLLAAGSGPIFQLGKVFRNEE 103 (322)
T ss_pred HHHHHHHHHcCceEecchHhhcCCCCccceeeeeeEEeccCccccceeeeecCcHHHHHHHHHccCCcchhhhHHHhccc
Confidence 699999999999999999997553222 1346877776 3689999999999999998 8999999999999999
Q ss_pred CCCccCcceeeeeeeEeecCCHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCCCcceeeHHHHHHHHHHcCCC
Q psy8087 232 SRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGDLVRQMNPNFEPPARPFLRMNYADAIEYLRKHEIR 311 (658)
Q Consensus 232 ~~~~rHl~EFt~lE~e~a~~d~~~~m~~~e~li~~i~~~~~~~~~~~~~~~~~~~~~~~~pf~rit~~ea~~~l~~~g~~ 311 (658)
. +.+|+|||||||||..+.||..+|+.+.+|++.++.. .++.++||.||+..+ .|+|
T Consensus 104 ~-G~~H~PEFTMLEWYrv~~d~~~lm~e~~~Ll~~vl~~--------------------~~~E~ls~~eaF~r~--~gid 160 (322)
T COG2269 104 M-GRLHNPEFTMLEWYRVGCDYYRLMNEVDDLLQLVLEC--------------------VEAERLSYQEAFLRY--LGID 160 (322)
T ss_pred c-cccCCCceeEeeeeccCCcHHHHHHHHHHHHHHHHcc--------------------CCcceeeHHHHHHHH--hCCC
Confidence 6 7799999999999999999999999999999988752 357899999999865 4555
Q ss_pred CCCC-----------------CCcccCCCCCCchhhhhhccc--CCcEEEEeCCCCCCCCCCccCCCCcCceeEEEEEeC
Q psy8087 312 KPDN-----------------TEYEFGEDIPEMPERKMTDQI--NRPIMLCRFPADIKSFYMSKCPENPALTESVDVLFP 372 (658)
Q Consensus 312 ~~~~-----------------~~~~~g~~l~~~~e~~l~~~~--~~p~fi~~~P~~~~pfy~~~~~~~~~~~~~fdL~~~ 372 (658)
.... ...+|.+.+.-++-..+++++ ++|+||+|||...+.+ ++.++.||++++|||||+.
T Consensus 161 ~l~~~~~~L~~~~~~~~l~~~~~~~~d~L~~~lf~~~VEP~lg~~rpt~ly~fP~~qaaL-A~i~~~D~rVAERFElY~k 239 (322)
T COG2269 161 PLSADKTELREAAAKLGLSAATDEDWDTLLQLLFVEGVEPNLGKERPTFLYHFPASQAAL-AQISTGDPRVAERFELYYK 239 (322)
T ss_pred cccccHHHHHHHHHhcCCCCCCccCHHHHHHHHHHhhcCcccCCCCceEEEeCcHHHHHh-hccCCCCcchhhhhhheee
Confidence 4321 112222223333344566776 5799999999999998 9999999999999999999
Q ss_pred CcceeeeceeccCCHHHHHHHHHHc-------CCCCC-CCcchHHHhhcCCCCccceecchhHHHHHHhcccCcchhhHH
Q psy8087 373 NVGEVIGGSMRIWDPEELLAGYKRE-------GIDPA-PYYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRDKYQL 444 (658)
Q Consensus 373 G~~Ei~~G~~r~~d~~~~~~~~~~~-------g~~~~-~~~~yl~a~~~G~pP~gG~GiGidRL~m~l~g~~~Irdvi~f 444 (658)
|+ ||+||+.|++|+.+|++||+.. |...- -+++||.|+.. ||||+|+++|||||+|+++|.++|.|||.|
T Consensus 240 Gi-ELaNgf~EltDa~EqrrRfe~dn~~r~~~~l~~~piDe~fl~Ala~-mP~cSGvALG~DRLvmLalg~~~i~~Vi~f 317 (322)
T COG2269 240 GI-ELANGFHELTDAAEQRRRFEQDNKERARRGLPQYPIDEDFLAALAR-MPPCSGVALGFDRLVMLALGAESIDDVIAF 317 (322)
T ss_pred ee-eecccchhcCCHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHh-CCCcccceecHHHHHHHHcCcchHHHHhhc
Confidence 99 9999999999999999999763 22211 26899999999 999999999999999999999999999999
Q ss_pred HHH
Q psy8087 445 IAK 447 (658)
Q Consensus 445 ~~k 447 (658)
|..
T Consensus 318 ~v~ 320 (322)
T COG2269 318 PVA 320 (322)
T ss_pred ccc
Confidence 753
|
|
| >KOG0555|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-34 Score=294.72 Aligned_cols=218 Identities=61% Similarity=0.959 Sum_probs=204.1
Q ss_pred hhhHHHHHhhhhhhhhhhhccchhHHHHHhhhhHHHHHHHHhHHHHHhcccCCCCCCCccceeecccCCccCCcEEEEEE
Q psy8087 440 DKYQLIAKAQLKKVSKLAARDNAKSESKAKKEEEDAEKREKNLEEAKKIVLKEDPSLPPAVRIKIKDGEKYRDKRVTIFG 519 (658)
Q Consensus 440 dvi~f~~k~~lk~~~K~~~~~~~k~~k~~~k~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~V~v~G 519 (658)
+---..+|++||+++|.+.++.+|+.|+.+++++.++++++++++++++.+++++|+|.++.++|-+...+.|++|+|.|
T Consensus 51 e~~e~~sk~~Lkk~~kg~~~~~~k~~k~~~~ea~~~ek~~~~le~a~ki~ised~slp~ak~iki~~s~~~r~qrVkv~g 130 (545)
T KOG0555|consen 51 EEYEPISKSALKKIKKGWVRECKKSAKASQKEAEASEKREKNLEEAKKITISEDKSLPAAKKIKIYDSTENRGQRVKVFG 130 (545)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHhhhcccccCCCCCchhheeeecccccccCceEEeeh
Confidence 33334689999999999999999999999999998999999999999999999999999999999999999999999999
Q ss_pred EEEeeecCCCceEEEEEEeCCEEEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCCCCCCCceEEEEEEEEEEecCC
Q psy8087 520 WVHRLRRQGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEGKSAPGGHELKVDYWEVVGLAP 599 (658)
Q Consensus 520 wI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~El~~~~i~vls~~~ 599 (658)
|||++|++ |+++|++|||++|.+|||++++.++......|+.+|.|.|.|+++..|+||+++|+.||.++.|+|++.|+
T Consensus 131 WVhrlR~q-k~l~FivLrdg~gflqCVl~~kl~~~yd~~~Ls~essv~vYG~i~~~p~GK~apgghEl~vdy~Eiig~Ap 209 (545)
T KOG0555|consen 131 WVHRLRRQ-KSLIFIVLRDGTGFLQCVLSDKLCQSYDALTLSTESSVTVYGTIKKLPEGKSAPGGHELNVDYWEIIGLAP 209 (545)
T ss_pred hhHhhhhc-CceEEEEEecCCceEEEEEcchhhhhhccccccccceEEEEEEEecCcCCCCCCCCceEEeeeeeeecccC
Confidence 99999999 79999999999999999999887765566789999999999999999999999999999999999999998
Q ss_pred CCCCCcccCCCCChhhhcccceeeeechhhHHHHHHHHHHHHHHHHHhhcCCcEEecCC
Q psy8087 600 AGGADAILNEEALPDVQLDNRHIMIRGENTSRVLLMRSVLLQALRAHFADRNYTEVNIE 658 (658)
Q Consensus 600 ~~~~~~~~~~~~~~e~r~~~R~LdLR~~~~~~ifr~Rs~i~~~iR~fL~~~gF~EVeTp 658 (658)
+...+..++..++++..++||||-+|....+.++++|++++++||+++.+.|++||.-|
T Consensus 210 ag~~~n~lne~s~~~~~LdnrHl~iRge~~s~vLK~Ra~~lr~~Rd~y~~~~ytEVtPP 268 (545)
T KOG0555|consen 210 AGGFDNPLNEESDVDVLLDNRHLVIRGENASKVLKARAALLRAMRDHYFERGYTEVTPP 268 (545)
T ss_pred CCcccccccccCCcceEeccceeEEechhHHHHHHHHHHHHHHHHHHHHhcCceecCCC
Confidence 77677788899999999999999999999999999999999999999999999999876
|
|
| >KOG1885|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.4e-31 Score=276.93 Aligned_cols=210 Identities=16% Similarity=0.220 Sum_probs=170.4
Q ss_pred HHHHHhhhhhhhhhhhccchhHHHHHhhhh-----------------HH---HHHHHHhHHHHHhcccCCCCC-------
Q psy8087 443 QLIAKAQLKKVSKLAARDNAKSESKAKKEE-----------------ED---AEKREKNLEEAKKIVLKEDPS------- 495 (658)
Q Consensus 443 ~f~~k~~lk~~~K~~~~~~~k~~k~~~k~~-----------------~~---~~~~~~~l~~~~~~~~~~~~~------- 495 (658)
.+.++..||+..++.+++..++++++.+.+ +. -+.|.+.+++.+.....|++.
T Consensus 6 ~~~sk~~lkrr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~d~~qy~~~R~r~i~~l~~s~~~Pyphkf~vs~s 85 (560)
T KOG1885|consen 6 EMLSKNELKRRSLAKQKALEKAKKASSKAAAPSVAAAKSVSKSEETSDPEQYFKIRSRAIEELRASGLNPYPHKFHVSIS 85 (560)
T ss_pred hhhhHHHHHHhHHHhhHHHHHHHhhhhccCCCccccccccccccccCCHHHHHHHHHHHHHHHhhcCCCCCcchhhcccc
Confidence 456788888888887776555555433221 11 123555667777777777642
Q ss_pred CCc--cceeecccCCccCCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCcc----ch-HHhccCCCCcEEEE
Q psy8087 496 LPP--AVRIKIKDGEKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILC----QT-EHALLLSTESSVQF 568 (658)
Q Consensus 496 ~~~--~~~~~i~~~~~~~g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~~----~~-~~~~~L~~gs~V~V 568 (658)
++. ++|..+..++...+..|+|+||||++|.+|+||+|++|++++..||||++.+.. .| ..++.|++||+|+|
T Consensus 86 i~~fieky~~l~~ge~~~n~~~svaGRI~s~R~sGsKL~Fydl~~~g~klQvm~~~~~~~~~~~F~~~~~~lkrGDiig~ 165 (560)
T KOG1885|consen 86 IPDFIEKYLHLATGEHLDNEIVSVAGRIHSKRESGSKLVFYDLHGDGVKLQVMANAKKITSEEDFEQLHKFLKRGDIIGV 165 (560)
T ss_pred HHHHHHHhcCcccccccccceeeeeeeEeeeeccCCceEEEEEecCCeEEEEEEehhhcCCHHHHHHHHhhhhccCEEee
Confidence 111 566666666777788899999999999999999999999999999999997542 34 55677999999999
Q ss_pred EEEEEecCCCCCCCCceEEEEEEEEEEecCCCCCCCcccCCCCChhhhcccceeeeech-hhHHHHHHHHHHHHHHHHHh
Q psy8087 569 RGRIEKVPEGKSAPGGHELKVDYWEVVGLAPAGGADAILNEEALPDVQLDNRHIMIRGE-NTSRVLLMRSVLLQALRAHF 647 (658)
Q Consensus 569 ~G~v~~~~~~~~~~g~~El~~~~i~vls~~~~~~~~~~~~~~~~~e~r~~~R~LdLR~~-~~~~ifr~Rs~i~~~iR~fL 647 (658)
+|.+ +++++|+++|.+.++.+|++|++ ++|....+..|.|+|+++|||||..| .++++|++|++|+.+||+||
T Consensus 166 ~G~p-----grt~~gELSi~~~~~~lLspcLh-~lP~~~~gLkD~EtRyrqRylDlilN~~~r~~f~~RakII~~iRkfl 239 (560)
T KOG1885|consen 166 SGYP-----GRTKSGELSIIPNEIILLSPCLH-MLPHEHFGLKDKETRYRKRYLDLILNPEVRDRFRIRAKIISYIRKFL 239 (560)
T ss_pred ecCC-----CcCCCceEEEeecchheecchhc-cCChhhcCCCcHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHh
Confidence 9999 55668999999999999999986 67777778899999999999999995 89999999999999999999
Q ss_pred hcCCcEEecCC
Q psy8087 648 ADRNYTEVNIE 658 (658)
Q Consensus 648 ~~~gF~EVeTp 658 (658)
+++||+|||||
T Consensus 240 d~rgFlEVETP 250 (560)
T KOG1885|consen 240 DSRGFLEVETP 250 (560)
T ss_pred hhcCceEecch
Confidence 99999999998
|
|
| >PLN02502 lysyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-30 Score=288.76 Aligned_cols=206 Identities=20% Similarity=0.215 Sum_probs=163.6
Q ss_pred HHhhhhhhhhhhhccchhHHHHHhhh------------------------hHHHHHHHHhHHHHHhcccCCCCCCCc---
Q psy8087 446 AKAQLKKVSKLAARDNAKSESKAKKE------------------------EEDAEKREKNLEEAKKIVLKEDPSLPP--- 498 (658)
Q Consensus 446 ~k~~lk~~~K~~~~~~~k~~k~~~k~------------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~--- 498 (658)
+|+.+|+..|+.+++++|++|.+++. .++.+.|.++++++++.++.+++..-.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~g~~pyp~~~~~~~ 88 (553)
T PLN02502 9 SKNALKKRLKAKQAEEEKAAKEEAKAAAAAAAAKGRSRKSAAADDETMDPTQYRANRLKKVEALRAKGVEPYPYKFDVTH 88 (553)
T ss_pred cHHHHHHHHhhhhhhHHHhhhHhhcccccccccCccccccccccccccCHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCc
Confidence 67889999988888776665544210 122345677778888888777763221
Q ss_pred ------cceeecccCCccCCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCcc-----chHH-hccCCCCcEE
Q psy8087 499 ------AVRIKIKDGEKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILC-----QTEH-ALLLSTESSV 566 (658)
Q Consensus 499 ------~~~~~i~~~~~~~g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~~-----~~~~-~~~L~~gs~V 566 (658)
.+|..+.......|++|+|+|||+++|.+| |++|++|||+++.||||++.+.. .+.. ...|++||+|
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~V~v~GrV~~~R~~G-k~~F~~LrD~~g~iQv~~~~~~~~~~~~~~~~~~~~l~~gdiV 167 (553)
T PLN02502 89 TAPELQEKYGSLENGEELEDVSVSVAGRIMAKRAFG-KLAFYDLRDDGGKIQLYADKKRLDLDEEEFEKLHSLVDRGDIV 167 (553)
T ss_pred cHHHHHHHhhccccccccCCCEEEEEEEEEEEecCC-CeEEEEEecCCccEEEEEECccccchhHHHHHHHhCCCCCcEE
Confidence 123333333445689999999999999999 79999999999999999976421 1433 3469999999
Q ss_pred EEEEEEEecCCCCCCCCceEEEEEEEEEEecCCCCCCCcccCCCCChhhhcccceeeee-chhhHHHHHHHHHHHHHHHH
Q psy8087 567 QFRGRIEKVPEGKSAPGGHELKVDYWEVVGLAPAGGADAILNEEALPDVQLDNRHIMIR-GENTSRVLLMRSVLLQALRA 645 (658)
Q Consensus 567 ~V~G~v~~~~~~~~~~g~~El~~~~i~vls~~~~~~~~~~~~~~~~~e~r~~~R~LdLR-~~~~~~ifr~Rs~i~~~iR~ 645 (658)
+|+|++.+++ +|++||.+++|+||++|.. ++|...++..+.++|+++|||||+ ++.++++|++||.|+++||+
T Consensus 168 ~V~G~~~~t~-----~gelel~~~~i~vLs~~l~-plP~k~~~~~d~e~r~r~RyLdl~~n~~~~~i~r~Rs~i~~~iR~ 241 (553)
T PLN02502 168 GVTGTPGKTK-----KGELSIFPTSFEVLTKCLL-MLPDKYHGLTDQETRYRQRYLDLIANPEVRDIFRTRAKIISYIRR 241 (553)
T ss_pred EEEEEEEecC-----CCCEEEEEeEEEEEeccCC-CCCcccccccchhhhccchhhhhhcCHHHHHHHHHHHHHHHHHHH
Confidence 9999998765 7899999999999999973 556555667899999999999997 57999999999999999999
Q ss_pred HhhcCCcEEecCC
Q psy8087 646 HFADRNYTEVNIE 658 (658)
Q Consensus 646 fL~~~gF~EVeTp 658 (658)
||+++||+||+||
T Consensus 242 fl~~~gF~EVeTP 254 (553)
T PLN02502 242 FLDDRGFLEVETP 254 (553)
T ss_pred HHHHCCCEEEECC
Confidence 9999999999999
|
|
| >PLN02850 aspartate-tRNA ligase | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.9e-30 Score=287.17 Aligned_cols=160 Identities=23% Similarity=0.260 Sum_probs=136.1
Q ss_pred CccceeecccC-CccCCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCc----cch-HHhccCCCCcEEEEEE
Q psy8087 497 PPAVRIKIKDG-EKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADIL----CQT-EHALLLSTESSVQFRG 570 (658)
Q Consensus 497 ~~~~~~~i~~~-~~~~g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~----~~~-~~~~~L~~gs~V~V~G 570 (658)
+..+|+++.++ ..+.|++|+|+|||+++|.+| +++|++|||++++||||+.... ..+ +++..|+.||+|.|+|
T Consensus 65 ~~~~~~~i~~l~~~~~g~~V~v~Grv~~~R~~g-k~~Fl~Lrd~~~~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G 143 (530)
T PLN02850 65 TGREWTDVSDLGEELAGSEVLIRGRVHTIRGKG-KSAFLVLRQSGFTVQCVVFVSEVTVSKGMVKYAKQLSRESVVDVEG 143 (530)
T ss_pred CCceEeEhhhcchhhCCCEEEEEEEEEEEccCC-CeEEEEEEeCCcCEEEEEECCccccCHHHHHHHhCCCCCCEEEEEE
Confidence 34567888876 567899999999999999999 5999999999999999997542 123 6778999999999999
Q ss_pred EEEecCCC-CCCCCceEEEEEEEEEEecCCCCCCCcccCC-------------------CCChhhhcccceeeeechhhH
Q psy8087 571 RIEKVPEG-KSAPGGHELKVDYWEVVGLAPAGGADAILNE-------------------EALPDVQLDNRHIMIRGENTS 630 (658)
Q Consensus 571 ~v~~~~~~-~~~~g~~El~~~~i~vls~~~~~~~~~~~~~-------------------~~~~e~r~~~R~LdLR~~~~~ 630 (658)
+|+.++.+ +++++++||++++++|||+|.. ++|....+ ..+.++|++|||||||++.++
T Consensus 144 ~v~~~~~~~~~~t~~~El~~~~i~vls~a~~-~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~rl~~R~LdlR~~~~q 222 (530)
T PLN02850 144 VVSVPKKPVKGTTQQVEIQVRKIYCVSKALA-TLPFNVEDAARSESEIEKALQTGEQLVRVGQDTRLNNRVLDLRTPANQ 222 (530)
T ss_pred EEEccCcCCCCCCccEEEEEeEEEEEeCCCC-CCCCChhhcccccccccccccccccccccChhhhhcchhhhhcCHHHH
Confidence 99865433 5667899999999999999963 34433221 245799999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCcEEecCC
Q psy8087 631 RVLLMRSVLLQALRAHFADRNYTEVNIE 658 (658)
Q Consensus 631 ~ifr~Rs~i~~~iR~fL~~~gF~EVeTp 658 (658)
++||+||.|+++||+||.++||+||+||
T Consensus 223 aifrirs~i~~~~R~fl~~~gF~EV~TP 250 (530)
T PLN02850 223 AIFRIQSQVCNLFREFLLSKGFVEIHTP 250 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHCCcEEEeCC
Confidence 9999999999999999999999999999
|
|
| >PTZ00401 aspartyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.8e-30 Score=286.13 Aligned_cols=160 Identities=23% Similarity=0.254 Sum_probs=135.0
Q ss_pred CccceeecccCC-cc-CCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCc---cc-hHHhccCCCCcEEEEEE
Q psy8087 497 PPAVRIKIKDGE-KY-RDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADIL---CQ-TEHALLLSTESSVQFRG 570 (658)
Q Consensus 497 ~~~~~~~i~~~~-~~-~g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~---~~-~~~~~~L~~gs~V~V~G 570 (658)
+..+|++|+++. .+ .|++|+|+|||+++|.+| |++|++|||+++.||||++... .. .+++..|+.||+|.|+|
T Consensus 61 ~~~~~~~i~~l~~~~~~g~~V~v~Grv~~~R~~G-k~~Fl~LRd~~~~iQ~v~~~~~~~~~~~~~~~~~l~~esiV~V~G 139 (550)
T PTZ00401 61 KSRTFIPVAVLSKPELVDKTVLIRARVSTTRKKG-KMAFMVLRDGSDSVQAMAAVEGDVPKEMIDFIGQIPTESIVDVEA 139 (550)
T ss_pred CCCceEEHHHCCccccCCCEEEEEEEEEEEecCC-CeEEEEEEeCCcCEEEEEECCCccCHHHHHHHhcCCCCCEEEEEE
Confidence 446788888873 34 699999999999999999 6999999999999999996432 22 36778899999999999
Q ss_pred EEEecCCC--CCCCCceEEEEEEEEEEecCCCCCCCcccCC----------CCChhhhcccceeeeechhhHHHHHHHHH
Q psy8087 571 RIEKVPEG--KSAPGGHELKVDYWEVVGLAPAGGADAILNE----------EALPDVQLDNRHIMIRGENTSRVLLMRSV 638 (658)
Q Consensus 571 ~v~~~~~~--~~~~g~~El~~~~i~vls~~~~~~~~~~~~~----------~~~~e~r~~~R~LdLR~~~~~~ifr~Rs~ 638 (658)
+|+.++.+ ...+|++||++++++|||+|+. ++|....+ ..+.++|+++||||||++.++++|++||.
T Consensus 140 ~v~~~~~~~~~~~~~~~El~v~~i~vls~a~~-~lP~~~~d~~~~~~~~~~~~~~dtrl~~R~LdlR~~~~~~i~r~rs~ 218 (550)
T PTZ00401 140 TVCKVEQPITSTSHSDIELKVKKIHTVTESLR-TLPFTLEDASRKESDEGAKVNFDTRLNSRWMDLRTPASGAIFRLQSR 218 (550)
T ss_pred EEEecCccCCCCCCccEEEEeeEEEEEeCCCC-CCCCCcccccccccccccccChhhhhhhhhhhhcCHHHHHHHHHHHH
Confidence 99986433 3456899999999999999963 34433322 13689999999999999999999999999
Q ss_pred HHHHHHHHhhcCCcEEecCC
Q psy8087 639 LLQALRAHFADRNYTEVNIE 658 (658)
Q Consensus 639 i~~~iR~fL~~~gF~EVeTp 658 (658)
|+++||+||.++||+||+||
T Consensus 219 i~~~~R~fl~~~gFiEV~TP 238 (550)
T PTZ00401 219 VCQYFRQFLIDSDFCEIHSP 238 (550)
T ss_pred HHHHHHHHHHHCCCEEEeCC
Confidence 99999999999999999999
|
|
| >COG0173 AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.3e-29 Score=267.65 Aligned_cols=148 Identities=29% Similarity=0.460 Sum_probs=133.3
Q ss_pred CccCCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCC-c-cchHHhccCCCCcEEEEEEEEEecCCC----CCC
Q psy8087 508 EKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADI-L-CQTEHALLLSTESSVQFRGRIEKVPEG----KSA 581 (658)
Q Consensus 508 ~~~~g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~-~-~~~~~~~~L~~gs~V~V~G~v~~~~~~----~~~ 581 (658)
..+.|++|+++||||++|++| +++|++|||.+|.+|||++.+ + ..++.+..|+.|++|.|+|+|..++++ +.+
T Consensus 11 ~~~vG~~V~L~GWV~r~Rd~G-gliFiDLRDr~GivQvv~~~~~~~~~~~~a~~lr~E~vi~V~G~V~~R~e~~~N~~l~ 89 (585)
T COG0173 11 ESHVGQTVTLSGWVHRRRDHG-GLIFIDLRDREGIVQVVFDPEDSPEAFEVASRLRNEFVIQVTGTVRARPEGTINPNLP 89 (585)
T ss_pred HHHCCCEEEEEeeeeeccccC-CeEEEEcccCCCeEEEEECCccCHHHHHHHHhcCceEEEEEEEEEEecCccccCCCCC
Confidence 568899999999999999999 699999999999999999984 2 235788899999999999999999764 467
Q ss_pred CCceEEEEEEEEEEecCCCCCCCcccCC--CCChhhhcccceeeeechhhHHHHHHHHHHHHHHHHHhhcCCcEEecCC
Q psy8087 582 PGGHELKVDYWEVVGLAPAGGADAILNE--EALPDVQLDNRHIMIRGENTSRVLLMRSVLLQALRAHFADRNYTEVNIE 658 (658)
Q Consensus 582 ~g~~El~~~~i~vls~~~~~~~~~~~~~--~~~~e~r~~~R~LdLR~~~~~~ifr~Rs~i~~~iR~fL~~~gF~EVeTp 658 (658)
+|++||.+++++|||.|.. +|+...+ ....++|++|||||||.+.+++.+++||+|+.++|+||+++||+|||||
T Consensus 90 TGeiEv~a~~i~vln~s~~--lPf~i~d~~~~~Ee~RLkYRyLDLRR~~m~~~l~lR~kv~~~iR~~ld~~gF~EiETP 166 (585)
T COG0173 90 TGEIEVLAEEIEVLNASKT--LPFQIEDETNASEEIRLKYRYLDLRRPEMQKNLKLRSKVTKAIRNFLDDQGFLEIETP 166 (585)
T ss_pred cceEEEEeeeEEEEecCCC--CCcCCCCCCCcchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHhhcCCeEeecC
Confidence 8999999999999999864 4444444 5788999999999999999999999999999999999999999999999
|
|
| >PRK00484 lysS lysyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.3e-28 Score=270.46 Aligned_cols=179 Identities=19% Similarity=0.183 Sum_probs=146.1
Q ss_pred HHHHHHHHhHHHHHhcccCCCCCCCcc---------ceeecccCC-ccCCcEEEEEEEEEeeecCCCceEEEEEEeCCEE
Q psy8087 473 EDAEKREKNLEEAKKIVLKEDPSLPPA---------VRIKIKDGE-KYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGF 542 (658)
Q Consensus 473 ~~~~~~~~~l~~~~~~~~~~~~~~~~~---------~~~~i~~~~-~~~g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~ 542 (658)
++.+.|.++|+++++.++.++|..... ++..+...+ ...+++|+|+|||+++|.+| |++|++|||++|.
T Consensus 5 ~~~~~r~~k~~~~~~~g~~~yp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~G~v~~~R~~g-~~~Fi~lrD~~g~ 83 (491)
T PRK00484 5 EQIAVRREKLAELREQGIDPYPNKFERTHTAAELRAKYDDKEKEELEELEIEVSVAGRVMLKRVMG-KASFATLQDGSGR 83 (491)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCCCcCccCHHHHHHHhccccchhhcccCcEEEEEEEEEEEecCC-ceEEEEEEcCCcc
Confidence 356778889999999888887642221 111111111 12247899999999999999 7999999999999
Q ss_pred EEEEEcCCcc---chHHhccCCCCcEEEEEEEEEecCCCCCCCCceEEEEEEEEEEecCCCCCCCcccCCCCChhhhccc
Q psy8087 543 IQCVLADILC---QTEHALLLSTESSVQFRGRIEKVPEGKSAPGGHELKVDYWEVVGLAPAGGADAILNEEALPDVQLDN 619 (658)
Q Consensus 543 iQvv~~~~~~---~~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~El~~~~i~vls~~~~~~~~~~~~~~~~~e~r~~~ 619 (658)
||||++++.. .++.+..|+.||+|+|+|+|.+++ +|++||.+++++||++|.. ++|...++..+.++|+++
T Consensus 84 iQ~v~~~~~~~~~~~~~~~~l~~g~~v~v~G~v~~t~-----~ge~el~~~~~~vls~~~~-plP~~~~~~~~~~~r~r~ 157 (491)
T PRK00484 84 IQLYVSKDDVGEEALEAFKKLDLGDIIGVEGTLFKTK-----TGELSVKATELTLLTKSLR-PLPDKFHGLTDVETRYRQ 157 (491)
T ss_pred EEEEEECCcCCHHHHHHHhcCCCCCEEEEEEEEEEcC-----CCcEEEEEeEEEEEeccCC-CCCcccccccchhhhccc
Confidence 9999986532 245566799999999999998765 7899999999999999963 456555667789999999
Q ss_pred ceeeeec-hhhHHHHHHHHHHHHHHHHHhhcCCcEEecCC
Q psy8087 620 RHIMIRG-ENTSRVLLMRSVLLQALRAHFADRNYTEVNIE 658 (658)
Q Consensus 620 R~LdLR~-~~~~~ifr~Rs~i~~~iR~fL~~~gF~EVeTp 658 (658)
||||||+ +.++++|++||+|+++||+||+++||+||+||
T Consensus 158 R~lDl~~~~~~~~~~r~Rs~i~~~iR~f~~~~gF~EVeTP 197 (491)
T PRK00484 158 RYVDLIVNPESRETFRKRSKIISAIRRFLDNRGFLEVETP 197 (491)
T ss_pred eeeehhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECC
Confidence 9999985 79999999999999999999999999999999
|
|
| >PRK12445 lysyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.2e-28 Score=269.81 Aligned_cols=181 Identities=17% Similarity=0.168 Sum_probs=147.7
Q ss_pred hhhHHHHHHHHhHHHHHhcccCCCCCCCc---------cceeecccC-CccCCcEEEEEEEEEeeecCCCceEEEEEEeC
Q psy8087 470 KEEEDAEKREKNLEEAKKIVLKEDPSLPP---------AVRIKIKDG-EKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDG 539 (658)
Q Consensus 470 k~~~~~~~~~~~l~~~~~~~~~~~~~~~~---------~~~~~i~~~-~~~~g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~ 539 (658)
+..++.+.|.++++++++.++ |++..-. .+|..+... ....|++|+|+|||+++|.+| |++|++|+|+
T Consensus 14 ~~~~~~~~r~~k~~~l~~~g~-py~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Grv~~~R~~G-k~~F~~lrD~ 91 (505)
T PRK12445 14 DFNDELRNRREKLAALRQQGV-AFPNDFRRDHTSDQLHEEFDAKDNQELESLNIEVSVAGRMMTRRIMG-KASFVTLQDV 91 (505)
T ss_pred CccHHHHHHHHHHHHHHHhCC-CCCCCCcCccCHHHHHHHhhccCcchhhcCCCEEEEEEEEEEEecCC-CcEEEEEEeC
Confidence 344567788889999998877 7763211 122222111 123478899999999999998 7999999999
Q ss_pred CEEEEEEEcCCcc---ch-HHhccCCCCcEEEEEEEEEecCCCCCCCCceEEEEEEEEEEecCCCCCCCcccCCCCChhh
Q psy8087 540 SGFIQCVLADILC---QT-EHALLLSTESSVQFRGRIEKVPEGKSAPGGHELKVDYWEVVGLAPAGGADAILNEEALPDV 615 (658)
Q Consensus 540 ~~~iQvv~~~~~~---~~-~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~El~~~~i~vls~~~~~~~~~~~~~~~~~e~ 615 (658)
+|.||||++++.. .+ ..+..|+.||+|+|+|++.+++ +|++||.++++++||+|.. |+|...++..+.++
T Consensus 92 ~g~iQ~~~~~~~~~~~~~~~~~~~l~~Gd~V~v~G~~~~t~-----~gelel~~~~~~llsk~~~-plP~~~~~~~d~e~ 165 (505)
T PRK12445 92 GGRIQLYVARDSLPEGVYNDQFKKWDLGDIIGARGTLFKTQ-----TGELSIHCTELRLLTKALR-PLPDKFHGLQDQEV 165 (505)
T ss_pred CccEEEEEECCccchhhHHHHHhcCCCCCEEEEEEEEEecC-----CCcEEEEEeEEEEEecCCC-CCCcccccccChhh
Confidence 9999999986431 23 2456799999999999998765 7999999999999999974 56666667789999
Q ss_pred hcccceeeeec-hhhHHHHHHHHHHHHHHHHHhhcCCcEEecCC
Q psy8087 616 QLDNRHIMIRG-ENTSRVLLMRSVLLQALRAHFADRNYTEVNIE 658 (658)
Q Consensus 616 r~~~R~LdLR~-~~~~~ifr~Rs~i~~~iR~fL~~~gF~EVeTp 658 (658)
|+++||||||+ +..+++|++||+|+++||+||+++||+||+||
T Consensus 166 r~r~Ryldl~~n~~~r~~~r~Rs~i~~~iR~f~~~~gFiEVeTP 209 (505)
T PRK12445 166 RYRQRYLDLIANDKSRQTFVVRSKILAAIRQFMVARGFMEVETP 209 (505)
T ss_pred hhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEeeCC
Confidence 99999999997 79999999999999999999999999999999
|
|
| >PTZ00417 lysine-tRNA ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=7e-28 Score=270.97 Aligned_cols=180 Identities=17% Similarity=0.155 Sum_probs=144.0
Q ss_pred hHHHHHHHHhHHHHHhcccCCCCCCCc---------cceeecccCCccCCcEEEEEEEEEeeecCCCceEEEEEEeCCEE
Q psy8087 472 EEDAEKREKNLEEAKKIVLKEDPSLPP---------AVRIKIKDGEKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGF 542 (658)
Q Consensus 472 ~~~~~~~~~~l~~~~~~~~~~~~~~~~---------~~~~~i~~~~~~~g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~ 542 (658)
..+.+.|.++++++++.++.++|..-. ..|..+...+...++.|+|+|||+++|.+|+|++|++|+|.++.
T Consensus 83 ~~~~~~r~~k~~~l~~~g~~pyp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Grv~~~R~~G~k~~F~~L~d~~g~ 162 (585)
T PTZ00417 83 RLYYENRSKFIQEQKAKGINPYPHKFERTITVPEFVEKYQDLASGEHLEDTILNVTGRIMRVSASGQKLRFFDLVGDGAK 162 (585)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCCcCCcCHHHHHHHhhccCccccccCCeEEEEEEEEeeecCCCCCEEEEEEeCCee
Confidence 445667888899998888888764221 11222221122235679999999999999978999999999999
Q ss_pred EEEEEcCCc-----cchH-HhccCCCCcEEEEEEEEEecCCCCCCCCceEEEEEEEEEEecCCCCCCCcccCCCCChhhh
Q psy8087 543 IQCVLADIL-----CQTE-HALLLSTESSVQFRGRIEKVPEGKSAPGGHELKVDYWEVVGLAPAGGADAILNEEALPDVQ 616 (658)
Q Consensus 543 iQvv~~~~~-----~~~~-~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~El~~~~i~vls~~~~~~~~~~~~~~~~~e~r 616 (658)
|||+++.+. ..+. ....|+.||+|+|+|++.++ ++|++||.++++++|++|.. ++|..+ +..+.++|
T Consensus 163 iQv~~~~~~~~~~~~~~~~~~~~l~~Gd~V~V~G~~~~t-----~~gel~i~~~~i~llsk~l~-~lP~~~-g~~d~e~r 235 (585)
T PTZ00417 163 IQVLANFAFHDHTKSNFAECYDKIRRGDIVGIVGFPGKS-----KKGELSIFPKETIILSPCLH-MLPMKY-GLKDTEIR 235 (585)
T ss_pred EEEEEECCccCCCHHHHHHHHhcCCCCCEEEEEeEEcCC-----CCceEEEEEEEEEEEecCCC-CCCccc-CCCCcccc
Confidence 999998642 2232 24679999999999998554 48999999999999999964 445443 56789999
Q ss_pred cccceeeeec-hhhHHHHHHHHHHHHHHHHHhhcCCcEEecCC
Q psy8087 617 LDNRHIMIRG-ENTSRVLLMRSVLLQALRAHFADRNYTEVNIE 658 (658)
Q Consensus 617 ~~~R~LdLR~-~~~~~ifr~Rs~i~~~iR~fL~~~gF~EVeTp 658 (658)
+++||||||+ +..+++|++||+|+++||+||+++||+||+||
T Consensus 236 ~r~RyLdL~~n~~~~~ifr~RS~Ii~aiR~Ff~~rGFlEVeTP 278 (585)
T PTZ00417 236 YRQRYLDLMINESTRSTFITRTKIINYLRNFLNDRGFIEVETP 278 (585)
T ss_pred cccchhhhhcCHHHHHHHHHHHHHHHHHHHHHHHCCeEEEeCC
Confidence 9999999995 78999999999999999999999999999999
|
|
| >TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-27 Score=266.44 Aligned_cols=179 Identities=18% Similarity=0.208 Sum_probs=145.4
Q ss_pred HHHHHHHHhHHHHHhcccCCCCCCCc---------cceeecccC-CccCCcEEEEEEEEEeeecCCCceEEEEEEeCCEE
Q psy8087 473 EDAEKREKNLEEAKKIVLKEDPSLPP---------AVRIKIKDG-EKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGF 542 (658)
Q Consensus 473 ~~~~~~~~~l~~~~~~~~~~~~~~~~---------~~~~~i~~~-~~~~g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~ 542 (658)
++.+.|.++++++++.+..+++..-. .+|..+... ....|++|+|+|||+++|.+| |++|++|+|++|.
T Consensus 4 ~~~~~r~~k~~~l~~~~~~~yp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Grv~~~R~~g-k~~F~~l~D~~g~ 82 (496)
T TIGR00499 4 DQLQTRREKLARLRQTGNNPYLNKFERTHSSQEFQEEYADLSNEELEDKNIEVSIAGRIMARRSMG-KATFITLQDESGQ 82 (496)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHhhccCccchhcCCCEEEEEEEEEEEecCC-CeEEEEEEcCCcc
Confidence 35567888899998888888764221 122222211 123488999999999999987 7999999999999
Q ss_pred EEEEEcCCcc--c-hHHhc-cCCCCcEEEEEEEEEecCCCCCCCCceEEEEEEEEEEecCCCCCCCcccCCCCChhhhcc
Q psy8087 543 IQCVLADILC--Q-TEHAL-LLSTESSVQFRGRIEKVPEGKSAPGGHELKVDYWEVVGLAPAGGADAILNEEALPDVQLD 618 (658)
Q Consensus 543 iQvv~~~~~~--~-~~~~~-~L~~gs~V~V~G~v~~~~~~~~~~g~~El~~~~i~vls~~~~~~~~~~~~~~~~~e~r~~ 618 (658)
||++++.+.. . +.... .|+.||+|+|+|++.+++ +|++||.+++|++||+|.. |+|...++.+|.++|++
T Consensus 83 iQ~~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~-----~gelel~~~~i~ilsk~~~-plP~k~~~~~d~e~r~r 156 (496)
T TIGR00499 83 IQLYVNKDDLPEDFYEFDEYLLDLGDIIGVTGYPFKTK-----TGELSVHVTELQILTKALR-PLPDKFHGLTDQETRYR 156 (496)
T ss_pred EEEEEECCcCcHHHHHHHHhcCCCCCEEEEEEEEEECC-----CCcEEEEeeEEEEEecCCC-CCCccccccCChhhhhh
Confidence 9999986532 1 23333 489999999999998765 7899999999999999964 55655666779999999
Q ss_pred cceeeeec-hhhHHHHHHHHHHHHHHHHHhhcCCcEEecCC
Q psy8087 619 NRHIMIRG-ENTSRVLLMRSVLLQALRAHFADRNYTEVNIE 658 (658)
Q Consensus 619 ~R~LdLR~-~~~~~ifr~Rs~i~~~iR~fL~~~gF~EVeTp 658 (658)
+||||||+ +.++++|++||.|+++||+||+++||+||+||
T Consensus 157 ~R~Ldl~~n~~~~~~~r~Rs~i~~~iR~fl~~~gF~EVeTP 197 (496)
T TIGR00499 157 QRYLDLIVNPDSRQTFLVRSKIIKAIRRFLDDRGFIEVETP 197 (496)
T ss_pred hhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHCcCEEEeCC
Confidence 99999997 69999999999999999999999999999999
|
This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms. |
| >KOG0556|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.6e-27 Score=244.29 Aligned_cols=168 Identities=26% Similarity=0.303 Sum_probs=139.7
Q ss_pred ccCCCCCCCccceeecccC-CccCCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCc-----cch-HHhccCC
Q psy8087 489 VLKEDPSLPPAVRIKIKDG-EKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADIL-----CQT-EHALLLS 561 (658)
Q Consensus 489 ~~~~~~~~~~~~~~~i~~~-~~~~g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~-----~~~-~~~~~L~ 561 (658)
......+.+...|+.++++ ....|+.|+|+||||.-|..| |++|++||+++.++||++..+. .+| +++..|+
T Consensus 58 ~l~~s~~~~~~~~~~v~dl~~~~~~~~V~vRgrVhtsr~~G-K~~FlvLRq~~~tVQ~~~~~~~~~~isk~Mvkf~~~is 136 (533)
T KOG0556|consen 58 SLIQSQSKEGRELTDVSDLDESNDGSEVLVRGRVHTSRLKG-KLCFLVLRQQGSTVQCLVAVNEDGTISKQMVKFAGSIS 136 (533)
T ss_pred cccccccccccceeehhhhhhhcCCceEEEEEEEeeccccc-eEEEEEEeccCceEEEEEEcCCCchHHHHHHHHHhhcC
Confidence 3333333445677888876 566789999999999999999 8999999999999999996542 245 7888999
Q ss_pred CCcEEEEEEEEEecCCC-CCCC-CceEEEEEEEEEEecCCCCCCCcccC-------------------CCCChhhhcccc
Q psy8087 562 TESSVQFRGRIEKVPEG-KSAP-GGHELKVDYWEVVGLAPAGGADAILN-------------------EEALPDVQLDNR 620 (658)
Q Consensus 562 ~gs~V~V~G~v~~~~~~-~~~~-g~~El~~~~i~vls~~~~~~~~~~~~-------------------~~~~~e~r~~~R 620 (658)
.||+|.|.|+|.+.+++ ++|+ +.+||++.++.+||.+++. +|.... ...+.++|++||
T Consensus 137 ~ESiV~v~g~v~k~~~~i~scT~qdvEi~v~~iyviS~a~~~-LPl~veDasrse~~eE~a~~~~~~~~~Vn~dtRLdnR 215 (533)
T KOG0556|consen 137 KESIVDVRGVVVKVKEPIKSCTVQDVEIHVRKIYVISIALPN-LPLQVEDASRSEPDEEKAAEPESTLARVNLDTRLDNR 215 (533)
T ss_pred cceEEEEEEEEecCCCcccccccceeEEEEEEEEEEeccccc-CCeeehhhcccccchhhhcCCccccceecccccccce
Confidence 99999999999998866 4544 7899999999999998643 332211 012679999999
Q ss_pred eeeeechhhHHHHHHHHHHHHHHHHHhhcCCcEEecCC
Q psy8087 621 HIMIRGENTSRVLLMRSVLLQALRAHFADRNYTEVNIE 658 (658)
Q Consensus 621 ~LdLR~~~~~~ifr~Rs~i~~~iR~fL~~~gF~EVeTp 658 (658)
.||||+|.+++|||+.+.|+.+||+||..+||+||+||
T Consensus 216 vlDLRtptnqAiFriq~gvc~~FRe~L~~kgF~EIhTp 253 (533)
T KOG0556|consen 216 VLDLRTPTNQAIFRIQAGVCFAFREYLRSKGFVEIHTP 253 (533)
T ss_pred eeecccccchheeehHHHHHHHHHHHHHhcCcceeccc
Confidence 99999999999999999999999999999999999998
|
|
| >TIGR00459 aspS_bact aspartyl-tRNA synthetase, bacterial type | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.8e-27 Score=264.17 Aligned_cols=147 Identities=27% Similarity=0.436 Sum_probs=128.7
Q ss_pred ccCCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCC----CCCCCc
Q psy8087 509 KYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEG----KSAPGG 584 (658)
Q Consensus 509 ~~~g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~----~~~~g~ 584 (658)
.+.|++|+|+|||+++|.+| |++|++|||++|.+|||++.+...++.+..|+.||+|.|+|+|..++++ +.++|+
T Consensus 12 ~~~g~~V~l~GwV~~~R~~G-kl~Fi~LrD~sg~iQvv~~~~~~~~~~~~~L~~esvV~V~G~v~~r~~~~~n~~~~tg~ 90 (583)
T TIGR00459 12 EHLGQTVTLAGWVNRRRDLG-GLIFIDLRDRSGIVQVVCDPDADALKLAKGLRNEDVVQVKGKVSARPEGNINRNLDTGE 90 (583)
T ss_pred hhCCCEEEEEEEEEEEEcCC-CcEEEEEEeCCccEEEEEeCCHHHHHHHhcCCCCCEEEEEEEEEeCCccccCccCCCCc
Confidence 56799999999999999999 6999999999999999998763334667889999999999999987643 256899
Q ss_pred eEEEEEEEEEEecCCCCCCCccc-CCCCChhhhcccceeeeechhhHHHHHHHHHHHHHHHHHhhcCCcEEecCC
Q psy8087 585 HELKVDYWEVVGLAPAGGADAIL-NEEALPDVQLDNRHIMIRGENTSRVLLMRSVLLQALRAHFADRNYTEVNIE 658 (658)
Q Consensus 585 ~El~~~~i~vls~~~~~~~~~~~-~~~~~~e~r~~~R~LdLR~~~~~~ifr~Rs~i~~~iR~fL~~~gF~EVeTp 658 (658)
+||.++++++||+|.. +|+.. ....+.++|+++||||||++.++++|++||+|+++||+||+++||+|||||
T Consensus 91 iEl~~~~i~iL~~a~~--~P~~~~~~~~~~~~Rl~~RyLDLR~~~~~~~lr~Rs~i~~~iR~ff~~~gFiEVeTP 163 (583)
T TIGR00459 91 IEILAESITLLNKSKT--PPLIIEKTDAEEEVRLKYRYLDLRRPEMQQRLKLRHKVTKAVRNFLDQQGFLEIETP 163 (583)
T ss_pred EEEEEeEEEEeecCCC--CCCcccccccchhhhcccceEEcCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECC
Confidence 9999999999999863 23222 334678999999999999999999999999999999999999999999999
|
In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_bact, represents aspartyl-tRNA synthetases from the Bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). This model generates very low scores for the archaeal type of aspS and for asnS; scores between the trusted and noise cutoffs represent fragmentary sequences. |
| >COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.8e-27 Score=250.84 Aligned_cols=150 Identities=38% Similarity=0.535 Sum_probs=128.7
Q ss_pred eecccCCccCC-cEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCcc---chHHhccCCCCcEEEEEEEEEecCC
Q psy8087 502 IKIKDGEKYRD-KRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILC---QTEHALLLSTESSVQFRGRIEKVPE 577 (658)
Q Consensus 502 ~~i~~~~~~~g-~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~~---~~~~~~~L~~gs~V~V~G~v~~~~~ 577 (658)
+.+.+...+.+ ++|+|+|||+++|++| +++|+.|||++|.||||+.++.. .++ +..|+.||+|.|+|+|+.++
T Consensus 5 ~~i~di~~~~~~~~V~v~GWV~~~R~~g-~i~Fi~lrDgsg~iQ~v~~~~~~~~~~~~-~~~L~~es~v~V~G~v~~~~- 81 (435)
T COG0017 5 TYIKDIKPHVGGQEVTVRGWVHNKRDLG-KIIFLVLRDGSGFIQAVVPKNKVYEELFK-AKKLTLESSVVVTGIVKASP- 81 (435)
T ss_pred eeHHhhhccCCCcEEEEEEEeeeecccC-CeEEEEEEcCCcEEEEEEECCCCcHHHhh-hhcCCCccEEEEEEEEEcCC-
Confidence 34555544444 9999999999999998 69999999999999999986422 234 67899999999999998876
Q ss_pred CCCCCCceEEEEEEEEEEecCCCCCCCcccCCCC-ChhhhcccceeeeechhhHHHHHHHHHHHHHHHHHhhcCCcEEec
Q psy8087 578 GKSAPGGHELKVDYWEVVGLAPAGGADAILNEEA-LPDVQLDNRHIMIRGENTSRVLLMRSVLLQALRAHFADRNYTEVN 656 (658)
Q Consensus 578 ~~~~~g~~El~~~~i~vls~~~~~~~~~~~~~~~-~~e~r~~~R~LdLR~~~~~~ifr~Rs~i~~~iR~fL~~~gF~EVe 656 (658)
.+++++||++++++|++.+. .++|. .++.+ +.++++++||||||++..+++||+||.|++++|+||.++||+||+
T Consensus 82 --~a~~g~El~v~~i~Vl~~a~-~~~Pi-~~~~~~~~e~lld~rhL~lR~~~~~Av~kirs~i~~a~~eff~~~gF~eV~ 157 (435)
T COG0017 82 --KAPQGFELQVEKIEVLGEAD-PPYPI-DKKEHSELETLLDNRHLDLRTPKIQAVFKIRSSILRAIREFFYENGFTEVH 157 (435)
T ss_pred --CCCCCEEEEEEEEEEeeccC-CCCCc-CcccccCHHHHHhchheeccccchHHHHhHHHHHHHHHHHHHHhCCcEEec
Confidence 36899999999999999994 34443 33444 699999999999999999999999999999999999999999999
Q ss_pred CC
Q psy8087 657 IE 658 (658)
Q Consensus 657 Tp 658 (658)
||
T Consensus 158 tP 159 (435)
T COG0017 158 TP 159 (435)
T ss_pred Cc
Confidence 99
|
|
| >PLN02903 aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-26 Score=262.30 Aligned_cols=149 Identities=23% Similarity=0.368 Sum_probs=128.5
Q ss_pred CccCCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCc--cchHHhccCCCCcEEEEEEEEEecCC----CCCC
Q psy8087 508 EKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADIL--CQTEHALLLSTESSVQFRGRIEKVPE----GKSA 581 (658)
Q Consensus 508 ~~~~g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~--~~~~~~~~L~~gs~V~V~G~v~~~~~----~~~~ 581 (658)
..+.|++|+|+|||+++|.+| +++|++|||++|.+|||++.+. ..+..+..|+.||+|.|+|+|..+++ ++.+
T Consensus 68 ~~~~gk~V~l~GWV~~~R~~G-~l~FidLRD~~G~iQvV~~~~~~~~~~~~~~~L~~esvV~V~G~V~~r~~~~~n~~~~ 146 (652)
T PLN02903 68 VNDVGSRVTLCGWVDLHRDMG-GLTFLDVRDHTGIVQVVTLPDEFPEAHRTANRLRNEYVVAVEGTVRSRPQESPNKKMK 146 (652)
T ss_pred hhhCCCEEEEEEEEEEEecCC-CcEEEEEEcCCccEEEEEeCCccHHHHHHHhcCCCCCEEEEEEEEEeCCCcCcCCCCC
Confidence 467899999999999999998 7999999999999999998653 22356788999999999999998742 2455
Q ss_pred CCceEEEEEEEEEEecCCCCCCCcccC------CCCChhhhcccceeeeechhhHHHHHHHHHHHHHHHHHhhc-CCcEE
Q psy8087 582 PGGHELKVDYWEVVGLAPAGGADAILN------EEALPDVQLDNRHIMIRGENTSRVLLMRSVLLQALRAHFAD-RNYTE 654 (658)
Q Consensus 582 ~g~~El~~~~i~vls~~~~~~~~~~~~------~~~~~e~r~~~R~LdLR~~~~~~ifr~Rs~i~~~iR~fL~~-~gF~E 654 (658)
+|++||.+++++|||+|.. ++|.... ...+.++|+++||||||++.++++|++||+|+++||+||.+ +||+|
T Consensus 147 tGeiEl~~~~i~VL~~a~~-~lPf~i~~~~~~~~~~~ee~Rl~~RyLDLR~~~~q~~lr~Rs~i~~~iR~fl~~~~gFiE 225 (652)
T PLN02903 147 TGSVEVVAESVDILNVVTK-SLPFLVTTADEQKDSIKEEVRLRYRVLDLRRPQMNANLRLRHRVVKLIRRYLEDVHGFVE 225 (652)
T ss_pred CCCEEEEEeEEEEEecCCC-CCCccccccccccccCChhhhhccceeecCCHHHHHHHHHHHHHHHHHHHHHHhcCCeEE
Confidence 7999999999999999853 3343332 23678999999999999999999999999999999999997 99999
Q ss_pred ecCC
Q psy8087 655 VNIE 658 (658)
Q Consensus 655 VeTp 658 (658)
|+||
T Consensus 226 VeTP 229 (652)
T PLN02903 226 IETP 229 (652)
T ss_pred EECC
Confidence 9999
|
|
| >COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-26 Score=250.22 Aligned_cols=181 Identities=17% Similarity=0.203 Sum_probs=151.3
Q ss_pred hhhHHHHHHHHhHHHHHhcccCCCCCCCcc---------ceeecccCCcc--CCcEEEEEEEEEeeecCCCceEEEEEEe
Q psy8087 470 KEEEDAEKREKNLEEAKKIVLKEDPSLPPA---------VRIKIKDGEKY--RDKRVTIFGWVHRLRRQGKGLMFVTLRD 538 (658)
Q Consensus 470 k~~~~~~~~~~~l~~~~~~~~~~~~~~~~~---------~~~~i~~~~~~--~g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd 538 (658)
...++.+.|.++++++++.++.+++..-.. +|.... .+.. ....|+|+|||.++|.+| |++|++|.|
T Consensus 9 ~~~~~~~~R~~kl~~lr~~g~~~yp~~~~~~~~~~~l~~~~~~~~-~~el~~~~~~v~vAGRi~~~R~~G-K~~F~~i~d 86 (502)
T COG1190 9 DLNDQIAVRREKLAALREQGIDPYPNDFERTHTSADLREKYADKT-KEELEALNIEVSVAGRIMTIRNMG-KASFADLQD 86 (502)
T ss_pred cCcHHHHHHHHHHHHHHHcCCCCCCCcCcccccHHHHHHHHhccc-hhhhhhccceeEEecceeeecccC-ceeEEEEec
Confidence 345567888889999988888887643321 121111 1111 122499999999999999 899999999
Q ss_pred CCEEEEEEEcCCc---cch-HHhccCCCCcEEEEEEEEEecCCCCCCCCceEEEEEEEEEEecCCCCCCCcccCCCCChh
Q psy8087 539 GSGFIQCVLADIL---CQT-EHALLLSTESSVQFRGRIEKVPEGKSAPGGHELKVDYWEVVGLAPAGGADAILNEEALPD 614 (658)
Q Consensus 539 ~~~~iQvv~~~~~---~~~-~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~El~~~~i~vls~~~~~~~~~~~~~~~~~e 614 (658)
++|.||++++++. ..+ .+...++.||+|+|+|.+.+++ +|+++|.|++|++|++|+. |+|..+++.+|+|
T Consensus 87 ~~gkiQ~yi~k~~~~~~~~~~~~~~~dlGDiigv~G~~~~T~-----~GelSv~v~~~~lLsKsL~-pLPeK~hgL~D~E 160 (502)
T COG1190 87 GSGKIQLYVNKDEVGEEVFEALFKKLDLGDIIGVEGPLFKTK-----TGELSVSVEELRLLSKSLR-PLPEKFHGLTDKE 160 (502)
T ss_pred CCceEEEEEeccccchhhHHHHHhccccCCEEeeeeeeeecC-----CCceEEEEEEEeeecccCC-CCChhhcCCccHH
Confidence 9999999999764 233 3567799999999999998766 8999999999999999985 7888889999999
Q ss_pred hhcccceeeeech-hhHHHHHHHHHHHHHHHHHhhcCCcEEecCC
Q psy8087 615 VQLDNRHIMIRGE-NTSRVLLMRSVLLQALRAHFADRNYTEVNIE 658 (658)
Q Consensus 615 ~r~~~R~LdLR~~-~~~~ifr~Rs~i~~~iR~fL~~~gF~EVeTp 658 (658)
+|+|+|||||.++ ..+.+|..||+|+++||+||+++||+|||||
T Consensus 161 ~RyR~RylDLi~N~e~r~~f~~Rs~ii~~iR~fl~~~gFlEVETP 205 (502)
T COG1190 161 IRYRQRYLDLIVNPESRQTFIKRSKIIRAIREFLDDRGFLEVETP 205 (502)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHCCCeEeccc
Confidence 9999999999995 8999999999999999999999999999999
|
|
| >PRK00476 aspS aspartyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=3e-26 Score=259.64 Aligned_cols=147 Identities=29% Similarity=0.448 Sum_probs=128.0
Q ss_pred ccCCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCC----CCCCCc
Q psy8087 509 KYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEG----KSAPGG 584 (658)
Q Consensus 509 ~~~g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~----~~~~g~ 584 (658)
.+.|++|+|+|||+++|.+| +++|++|||++|.+|||++.....++.+..|+.||+|.|+|+|..++++ +.++|+
T Consensus 14 ~~~g~~V~l~GwV~~~R~~g-~l~Fi~LrD~~g~iQ~v~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~n~~~~~g~ 92 (588)
T PRK00476 14 SHVGQTVTLCGWVHRRRDHG-GLIFIDLRDREGIVQVVFDPDAEAFEVAESLRSEYVIQVTGTVRARPEGTVNPNLPTGE 92 (588)
T ss_pred HhCCCEEEEEEEEEEEEeCC-CeEEEEEEeCCceEEEEEeCCHHHHHHHhCCCCCCEEEEEEEEEecCCcccCccCCCCc
Confidence 56799999999999999998 7999999999999999998632224667889999999999999987633 345799
Q ss_pred eEEEEEEEEEEecCCCCCCCcccC--CCCChhhhcccceeeeechhhHHHHHHHHHHHHHHHHHhhcCCcEEecCC
Q psy8087 585 HELKVDYWEVVGLAPAGGADAILN--EEALPDVQLDNRHIMIRGENTSRVLLMRSVLLQALRAHFADRNYTEVNIE 658 (658)
Q Consensus 585 ~El~~~~i~vls~~~~~~~~~~~~--~~~~~e~r~~~R~LdLR~~~~~~ifr~Rs~i~~~iR~fL~~~gF~EVeTp 658 (658)
+||.+++++|||+|. ++|.... ...+.++|+++||||||++.++++|++||+|++++|+||+++||+||+||
T Consensus 93 ~El~~~~i~il~~a~--~lP~~~~~~~~~~~~~Rl~~R~LdlR~~~~~~~l~~Rs~i~~~iR~ff~~~gFiEV~TP 166 (588)
T PRK00476 93 IEVLASELEVLNKSK--TLPFPIDDEEDVSEELRLKYRYLDLRRPEMQKNLKLRSKVTSAIRNFLDDNGFLEIETP 166 (588)
T ss_pred EEEEEeEEEEEecCC--CCCCcccccccCChhhhhhcceEeecCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECC
Confidence 999999999999996 2343332 23578999999999999999999999999999999999999999999999
|
|
| >PRK02983 lysS lysyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.3e-26 Score=274.60 Aligned_cols=179 Identities=21% Similarity=0.305 Sum_probs=149.5
Q ss_pred hHHHHHHHHhHHHHHhcccCCCCCCCccceeecccC-CccCCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCC
Q psy8087 472 EEDAEKREKNLEEAKKIVLKEDPSLPPAVRIKIKDG-EKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADI 550 (658)
Q Consensus 472 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~ 550 (658)
.++.+.|.++++++++.++++++..-. ....+.+. +...|++|+|+|||+++|.+| |++|++|||++|.|||+++++
T Consensus 611 ~~~~~~r~~k~~~l~~~g~~pyp~~~~-~~~~~~~~~~~~~~~~V~v~Grv~~~R~~G-~~~F~~lrD~~g~iQ~v~~~~ 688 (1094)
T PRK02983 611 PEQVRVRLAKLEALRAAGVDPYPVGVP-PTHTVAEALDAPTGEEVSVSGRVLRIRDYG-GVLFADLRDWSGELQVLLDAS 688 (1094)
T ss_pred cHHHHHHHHHHHHHHHcCCCCCCCCCc-CccCHHHHHHhcCCCEEEEEEEEEEEeeCC-CeEEEEEEeCCeeEEEEEECC
Confidence 346778889999999999888763221 11223332 346788999999999999999 799999999999999999865
Q ss_pred cc---ch-HHhccCCCCcEEEEEEEEEecCCCCCCCCceEEEEEEEEEEecCCCCCCCcccCCCCChhhhcccceeeeec
Q psy8087 551 LC---QT-EHALLLSTESSVQFRGRIEKVPEGKSAPGGHELKVDYWEVVGLAPAGGADAILNEEALPDVQLDNRHIMIRG 626 (658)
Q Consensus 551 ~~---~~-~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~El~~~~i~vls~~~~~~~~~~~~~~~~~e~r~~~R~LdLR~ 626 (658)
.. .+ .+...|+.||+|+|+|++.+++ +|++||.+++|+++++|.. |+|...++..++++|+++||||||+
T Consensus 689 ~~~~~~~~~~~~~l~~gd~V~v~G~v~~t~-----~ge~ei~~~~i~ll~k~~~-plP~k~~~~~d~e~R~r~R~lDL~~ 762 (1094)
T PRK02983 689 RLEQGSLADFRAAVDLGDLVEVTGTMGTSR-----NGTLSLLVTSWRLAGKCLR-PLPDKWKGLTDPEARVRQRYLDLAV 762 (1094)
T ss_pred ccchhhHHHHHhcCCCCCEEEEEEEEEEcC-----CCCEEEEEeEEEEEeccCc-CCCCccccCCChhhcchhhhhhhhc
Confidence 32 12 3345699999999999998765 6899999999999999974 5565556778999999999999987
Q ss_pred -hhhHHHHHHHHHHHHHHHHHhhcCCcEEecCC
Q psy8087 627 -ENTSRVLLMRSVLLQALRAHFADRNYTEVNIE 658 (658)
Q Consensus 627 -~~~~~ifr~Rs~i~~~iR~fL~~~gF~EVeTp 658 (658)
+.++++|++||+|+++||+||+++||+|||||
T Consensus 763 n~~~~~~~r~Rs~i~~~iR~fl~~~gFlEVeTP 795 (1094)
T PRK02983 763 NPEARDLLRARSAVVRAVRETLVARGFLEVETP 795 (1094)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCC
Confidence 79999999999999999999999999999999
|
|
| >PRK05159 aspC aspartyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.6e-26 Score=252.63 Aligned_cols=152 Identities=31% Similarity=0.443 Sum_probs=129.7
Q ss_pred eecccC-CccCCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCc--cchHHhccCCCCcEEEEEEEEEecCCC
Q psy8087 502 IKIKDG-EKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADIL--CQTEHALLLSTESSVQFRGRIEKVPEG 578 (658)
Q Consensus 502 ~~i~~~-~~~~g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~--~~~~~~~~L~~gs~V~V~G~v~~~~~~ 578 (658)
+.+.++ ....|++|+|+|||+++|.+| |++|++|||++|.|||+++.+. ..++.+..|+.||+|.|+|++..++
T Consensus 5 ~~~~~l~~~~~g~~V~i~GrV~~~R~~g-k~~Fl~LrD~~g~iQ~v~~~~~~~~~~~~~~~L~~gs~V~v~G~v~~~~-- 81 (437)
T PRK05159 5 HLTSELTPELDGEEVTLAGWVHEIRDLG-GIAFLILRDRSGIIQVVVKKKVDEELFETIKKLKRESVVSVTGTVKANP-- 81 (437)
T ss_pred eEhhhCChhhCCCEEEEEEEeEeeecCC-CeEEEEEEcCCcEEEEEEeCCccHHHHHHHhCCCCCcEEEEEEEEEcCC--
Confidence 445554 344599999999999999998 7999999999999999998653 2235678899999999999998765
Q ss_pred CCCCCceEEEEEEEEEEecCCCCCCCcccC--CCCChhhhcccceeeeechhhHHHHHHHHHHHHHHHHHhhcCCcEEec
Q psy8087 579 KSAPGGHELKVDYWEVVGLAPAGGADAILN--EEALPDVQLDNRHIMIRGENTSRVLLMRSVLLQALRAHFADRNYTEVN 656 (658)
Q Consensus 579 ~~~~g~~El~~~~i~vls~~~~~~~~~~~~--~~~~~e~r~~~R~LdLR~~~~~~ifr~Rs~i~~~iR~fL~~~gF~EVe 656 (658)
.+.|++||.+++++|||+|.. ++|.... ...+.++|+++||||||++..+++|++||.|+++||+||.++||+||+
T Consensus 82 -~~~~~~el~~~~i~vls~a~~-~~P~~~~~~~~~~~~~~~~~r~Ldlr~~~~~~~l~~Rs~i~~~iR~ff~~~gf~EV~ 159 (437)
T PRK05159 82 -KAPGGVEVIPEEIEVLNKAEE-PLPLDISGKVLAELDTRLDNRFLDLRRPRVRAIFKIRSEVLRAFREFLYENGFTEIF 159 (437)
T ss_pred -CCCCCEEEEEeEEEEEeCCCC-CCCCCccccccCCHHHHhhCcceecCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEe
Confidence 346899999999999999973 3443222 245789999999999999999999999999999999999999999999
Q ss_pred CC
Q psy8087 657 IE 658 (658)
Q Consensus 657 Tp 658 (658)
||
T Consensus 160 TP 161 (437)
T PRK05159 160 TP 161 (437)
T ss_pred CC
Confidence 99
|
|
| >PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.5e-26 Score=260.45 Aligned_cols=150 Identities=25% Similarity=0.354 Sum_probs=127.4
Q ss_pred CccCCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCc---cchHHhccCCCCcEEEEEEEEEecCCC----CC
Q psy8087 508 EKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADIL---CQTEHALLLSTESSVQFRGRIEKVPEG----KS 580 (658)
Q Consensus 508 ~~~~g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~---~~~~~~~~L~~gs~V~V~G~v~~~~~~----~~ 580 (658)
..+.|++|+|+|||+++|++| +++|++|||++|.+|||++++. ..+..+..|+.||+|.|+|+|..++.+ +.
T Consensus 14 ~~~~g~~V~l~GWV~~~R~~G-~l~FidLRD~~G~iQvV~~~~~~~~~~~~~~~~L~~EsvV~V~G~v~~r~~~~~n~~~ 92 (706)
T PRK12820 14 LDDTGREVCLAGWVDAFRDHG-ELLFIHLRDRNGFIQAVFSPEAAPADVYELAASLRAEFCVALQGEVQKRLEETENPHI 92 (706)
T ss_pred hhhCCCEEEEEEEEEEEEcCC-CcEEEEEEeCCccEEEEEeCCcCCHHHHHHHhcCCCCCEEEEEeEEeccCccccCCCC
Confidence 457799999999999999999 7999999999999999998643 224567889999999999999986533 23
Q ss_pred CCCceEEEEEEEEEEecCCCCCCCcccC-----------CCCChhhhcccceeeeechhhHHHHHHHHHHHHHHHHHhhc
Q psy8087 581 APGGHELKVDYWEVVGLAPAGGADAILN-----------EEALPDVQLDNRHIMIRGENTSRVLLMRSVLLQALRAHFAD 649 (658)
Q Consensus 581 ~~g~~El~~~~i~vls~~~~~~~~~~~~-----------~~~~~e~r~~~R~LdLR~~~~~~ifr~Rs~i~~~iR~fL~~ 649 (658)
.+|++||.+++++||++|...|++.... ...+.++|+++||||||++.++++|++||.|+++||+||++
T Consensus 93 ~tg~iEl~~~~i~iL~~a~~lP~~i~~~~~~~~~~~~~~~~~~e~~Rl~~RyLDLR~~~~~~~lr~Rs~i~~~iR~fl~~ 172 (706)
T PRK12820 93 ETGDIEVFVRELSILAASEALPFAISDKAMTAGAGSAGADAVNEDLRLQYRYLDIRRPAMQDHLAKRHRIIKCARDFLDS 172 (706)
T ss_pred CCCcEEEEeeEEEEEecCCCCCCCCcccccccccccccccccCHhhhhhCceeecCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5699999999999999986323321111 12468999999999999999999999999999999999999
Q ss_pred CCcEEecCC
Q psy8087 650 RNYTEVNIE 658 (658)
Q Consensus 650 ~gF~EVeTp 658 (658)
+||+||+||
T Consensus 173 ~gFiEVeTP 181 (706)
T PRK12820 173 RGFLEIETP 181 (706)
T ss_pred CCCEEEeCC
Confidence 999999999
|
|
| >TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type | Back alignment and domain information |
|---|
Probab=99.94 E-value=7e-26 Score=249.38 Aligned_cols=145 Identities=32% Similarity=0.461 Sum_probs=125.9
Q ss_pred ccCCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCc---cchHHhccCCCCcEEEEEEEEEecCCCCCCCCce
Q psy8087 509 KYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADIL---CQTEHALLLSTESSVQFRGRIEKVPEGKSAPGGH 585 (658)
Q Consensus 509 ~~~g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~---~~~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~ 585 (658)
.+.|++|+|+|||+++|.+| |++|++|||+++.|||+++.+. ..++++..|+.||+|.|+|++..++ .++|++
T Consensus 9 ~~~g~~v~i~G~v~~~R~~g-~~~Fi~lrd~~g~iQ~v~~~~~~~~~~~~~~~~l~~~s~v~v~G~v~~~~---~~~~~~ 84 (428)
T TIGR00458 9 EMDGQEVTFMGWVHEIRDLG-GLIFVLLRDREGLIQITAPAKKVSKNLFKWAKKLNLESVVAVRGIVKIKE---KAPGGF 84 (428)
T ss_pred hhCCCEEEEEEEEEEEecCC-CcEEEEEEeCCeeEEEEEECCcCCHHHHHHHhCCCCCcEEEEEEEEEecC---CCCCcE
Confidence 56789999999999999998 5999999999999999998642 1235677899999999999998654 346899
Q ss_pred EEEEEEEEEEecCCCCCCCcccCC--CCChhhhcccceeeeechhhHHHHHHHHHHHHHHHHHhhcCCcEEecCC
Q psy8087 586 ELKVDYWEVVGLAPAGGADAILNE--EALPDVQLDNRHIMIRGENTSRVLLMRSVLLQALRAHFADRNYTEVNIE 658 (658)
Q Consensus 586 El~~~~i~vls~~~~~~~~~~~~~--~~~~e~r~~~R~LdLR~~~~~~ifr~Rs~i~~~iR~fL~~~gF~EVeTp 658 (658)
||.+++++|||+|.. ++|....+ ..+.++|+++||||||++..+++|++||.|++++|+||.++||+||+||
T Consensus 85 el~~~~i~vl~~~~~-~lP~~~~~~~~~~~~~r~~~R~ldlr~~~~~~~~r~Rs~i~~~iR~ff~~~gf~EV~TP 158 (428)
T TIGR00458 85 EIIPTKIEVINEAKE-PLPLDPTEKVPAELDTRLDYRFLDLRRPTVQAIFRIRSGVLESVREFLAEEGFIEVHTP 158 (428)
T ss_pred EEEEeEEEEEecCCC-CCCCCccccCCCCHHHHhhhhhhhhCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCC
Confidence 999999999999963 34433322 3478999999999999999999999999999999999999999999999
|
In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_arch, represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the Archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). |
| >PTZ00385 lysyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-25 Score=253.74 Aligned_cols=141 Identities=21% Similarity=0.199 Sum_probs=120.2
Q ss_pred CcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCcc----chHHh-ccCCCCcEEEEEEEEEecCCCCCCCCceE
Q psy8087 512 DKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILC----QTEHA-LLLSTESSVQFRGRIEKVPEGKSAPGGHE 586 (658)
Q Consensus 512 g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~~----~~~~~-~~L~~gs~V~V~G~v~~~~~~~~~~g~~E 586 (658)
++.|+|+|||+++|.+| |++|++|||.+|.|||+++.+.. .+... ..|+.||+|+|+|++.+++ +|++|
T Consensus 107 ~~~V~vaGrV~~~R~~G-k~~F~~LrD~~G~IQvv~~~~~~~~~~~~~~~~~~l~~gdiV~V~G~v~~t~-----~Gele 180 (659)
T PTZ00385 107 QATVRVAGRVTSVRDIG-KIIFVTIRSNGNELQVVGQVGEHFTREDLKKLKVSLRVGDIIGADGVPCRMQ-----RGELS 180 (659)
T ss_pred CCEEEEEEEEEeeeccC-CeEEEEEEECCceEEEEEECCccCCHHHHHHHHhCCCCCCEEEEEEEEEecC-----CceEE
Confidence 56799999999999999 69999999999999999986532 23333 5799999999999998765 89999
Q ss_pred EEEEEEEEEecCC--CCCC-C--cccCCCCChhhhcccceeeeec-hhhHHHHHHHHHHHHHHHHHhhcCCcEEecCC
Q psy8087 587 LKVDYWEVVGLAP--AGGA-D--AILNEEALPDVQLDNRHIMIRG-ENTSRVLLMRSVLLQALRAHFADRNYTEVNIE 658 (658)
Q Consensus 587 l~~~~i~vls~~~--~~~~-~--~~~~~~~~~e~r~~~R~LdLR~-~~~~~ifr~Rs~i~~~iR~fL~~~gF~EVeTp 658 (658)
|.++++++||++. ..+. | +.++...+.++|+++||||||+ +.++++|++||+|+++||+||+++||+||+||
T Consensus 181 I~~~~i~lLska~~~~~~~~p~~~k~~~~~d~e~R~r~RyLDL~~n~~~~~ifr~Rs~I~~aiR~ff~~~gFlEVeTP 258 (659)
T PTZ00385 181 VAASRMLILSPYVCTDQVVCPNLRGFTVLQDNDVKYRYRFTDMMTNPCVIETIKKRHVMLQALRDYFNERNFVEVETP 258 (659)
T ss_pred EEeeEEEEechhhhccccCCCCCccccccCChhhhcccceeeeecCHHHHHHHHHHHHHHHHHHHHHHHCCCEEeeCC
Confidence 9999999999953 2111 1 1234567999999999999986 68999999999999999999999999999999
|
|
| >PLN02221 asparaginyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-25 Score=251.41 Aligned_cols=148 Identities=25% Similarity=0.346 Sum_probs=128.1
Q ss_pred CccCCcEEEEEEEEEeeecCCC-ceEEEEEEeCC--EEEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCCCCCCCc
Q psy8087 508 EKYRDKRVTIFGWVHRLRRQGK-GLMFVTLRDGS--GFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEGKSAPGG 584 (658)
Q Consensus 508 ~~~~g~~V~v~GwI~~~R~~Gk-kl~Fi~Lrd~~--~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~ 584 (658)
..+.|++|+|+|||+++|.+|+ +++|++|||++ |.||||+.++.. .....|+.||+|.|+|+|+.++..+.++|+
T Consensus 46 ~~~~g~~V~I~GWV~~iR~~Gk~~i~Fl~LRDgs~~g~iQvVv~~~~~--~~~~~L~~ES~V~V~G~V~~~~~~~~~~~~ 123 (572)
T PLN02221 46 AGLAGQKVRIGGWVKTGREQGKGTFAFLEVNDGSCPANLQVMVDSSLY--DLSTLVATGTCVTVDGVLKVPPEGKGTKQK 123 (572)
T ss_pred hhcCCCEEEEEEEEEehhhCCCceEEEEEEeCCcccccEEEEEcCchh--hHHhcCCCceEEEEEEEEEeCCccCCCCcc
Confidence 5678999999999999999996 48999999999 789999976422 122368999999999999988755567889
Q ss_pred eEEEEEEEEEEecCCCCCCCcccCCCCChhhhcccceeeeechhhHHHHHHHHHHHHHHHHHhhcCCcEEecCC
Q psy8087 585 HELKVDYWEVVGLAPAGGADAILNEEALPDVQLDNRHIMIRGENTSRVLLMRSVLLQALRAHFADRNYTEVNIE 658 (658)
Q Consensus 585 ~El~~~~i~vls~~~~~~~~~~~~~~~~~e~r~~~R~LdLR~~~~~~ifr~Rs~i~~~iR~fL~~~gF~EVeTp 658 (658)
+||++++++||++|...++| +....++.++++++|||++|++.++++||+||.|+++||+||.++||+||+||
T Consensus 124 iEl~v~~i~vl~~a~~~~~P-i~~~~~~~e~lrr~~hLR~R~~~~~Ai~RiRS~i~~aiR~ff~~~gFiEI~TP 196 (572)
T PLN02221 124 IELSVEKVIDVGTVDPTKYP-LPKTKLTLEFLRDVLHLRSRTNSISAVARIRNALAFATHSFFQEHSFLYIHTP 196 (572)
T ss_pred EEEEEeEEEEEecCCCCCCC-CCCCcCChHHHhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCC
Confidence 99999999999998532333 33446688999999999999999999999999999999999999999999999
|
|
| >PRK03932 asnC asparaginyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.7e-25 Score=245.12 Aligned_cols=145 Identities=30% Similarity=0.396 Sum_probs=126.0
Q ss_pred CccCCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCc--cchHHhccCCCCcEEEEEEEEEecCCCCCCCCce
Q psy8087 508 EKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADIL--CQTEHALLLSTESSVQFRGRIEKVPEGKSAPGGH 585 (658)
Q Consensus 508 ~~~~g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~--~~~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~ 585 (658)
..+.|++|+|+|||+++|.+| |++|++|||++|.+|+++..+. ..++.+..|+.||+|.|+|++..++ .++|++
T Consensus 12 ~~~~~~~V~i~G~v~~~R~~g-~~~Fi~lrD~~g~iq~~~~~~~~~~~~~~~~~l~~~s~v~v~G~v~~~~---~~~~~~ 87 (450)
T PRK03932 12 GKYVGQEVTVRGWVRTKRDSG-KIAFLQLRDGSCFKQLQVVKDNGEEYFEEIKKLTTGSSVIVTGTVVESP---RAGQGY 87 (450)
T ss_pred cccCCCEEEEEEEEEEEEeCC-CeEEEEEECCCCcEEEEEEcCCChHHHHHHhcCCCCcEEEEEEEEEcCC---CCCCCE
Confidence 466799999999999999997 7999999999999998886543 2246677899999999999998765 346899
Q ss_pred EEEEEEEEEEecCCCCCCCcccCCCCChhhhcccceeeeechhhHHHHHHHHHHHHHHHHHhhcCCcEEecCC
Q psy8087 586 ELKVDYWEVVGLAPAGGADAILNEEALPDVQLDNRHIMIRGENTSRVLLMRSVLLQALRAHFADRNYTEVNIE 658 (658)
Q Consensus 586 El~~~~i~vls~~~~~~~~~~~~~~~~~e~r~~~R~LdLR~~~~~~ifr~Rs~i~~~iR~fL~~~gF~EVeTp 658 (658)
||.+++++||+++.. ++| +..+.++.++++++||||||++.++++|++||.|++++|+||+++||+||+||
T Consensus 88 el~~~~i~vl~~~~~-~~p-~~~~~~~~~~~~~~r~l~lR~~~~~~~l~~Rs~i~~~iR~f~~~~gf~EV~TP 158 (450)
T PRK03932 88 ELQATKIEVIGEDPE-DYP-IQKKRHSIEFLREIAHLRPRTNKFGAVMRIRNTLAQAIHEFFNENGFVWVDTP 158 (450)
T ss_pred EEEEEEEEEccCCCC-CCC-CCccccChHHHhhCceeeccCHHHHHHHHHHHHHHHHHHHHHHHCCCEEecCC
Confidence 999999999999742 233 33445678999999999999999999999999999999999999999999999
|
|
| >TIGR00457 asnS asparaginyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.7e-25 Score=242.37 Aligned_cols=146 Identities=29% Similarity=0.380 Sum_probs=125.9
Q ss_pred CccCCcEEEEEEEEEeeecCCCceEEEEEEeCC--EEEEEEEcCCc--cchHHhccCCCCcEEEEEEEEEecCCCCCCCC
Q psy8087 508 EKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGS--GFIQCVLADIL--CQTEHALLLSTESSVQFRGRIEKVPEGKSAPG 583 (658)
Q Consensus 508 ~~~~g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~--~~iQvv~~~~~--~~~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g 583 (658)
..+.|++|+|+|||+++|.+| |++|++|||++ +.||||+++.. ..+..+..|+.||+|.|+|++..++ .+++
T Consensus 12 ~~~~g~~v~v~Gwv~~~R~~~-~~~F~~lrD~~~~g~iQ~v~~~~~~~~~~~~~~~l~~gs~V~v~G~v~~~~---~~~~ 87 (453)
T TIGR00457 12 YKFVGDEVTVSGWVRTKRSSK-KIIFLELNDGSSLGPIQAVINGEDNPYLFQLLKSLTTGSSVSVTGKVVESP---GKGQ 87 (453)
T ss_pred hhcCCCEEEEEEEeEEEEcCC-CeEEEEEECCCCCccEEEEEeCCcChHHHHHHHcCCCCcEEEEEEEEEcCC---CCCC
Confidence 356799999999999999886 89999999999 99999998752 2235677899999999999998754 3468
Q ss_pred ceEEEEEEEEEEecCCCCCCCcccCCCCChhhhcccceeeeechhhHHHHHHHHHHHHHHHHHhhcCCcEEecCC
Q psy8087 584 GHELKVDYWEVVGLAPAGGADAILNEEALPDVQLDNRHIMIRGENTSRVLLMRSVLLQALRAHFADRNYTEVNIE 658 (658)
Q Consensus 584 ~~El~~~~i~vls~~~~~~~~~~~~~~~~~e~r~~~R~LdLR~~~~~~ifr~Rs~i~~~iR~fL~~~gF~EVeTp 658 (658)
++||.+++++||++|+..++| ...+.++.++++++||||+|++..+++|++||.|++++|+||+++||+||+||
T Consensus 88 ~~El~~~~i~vl~~~~~~~~P-~~~~~~~~~~~~~~r~l~lR~~~~~~~lr~Rs~i~~~~r~~~~~~gf~eV~TP 161 (453)
T TIGR00457 88 PVELQVKKIEVVGEAEPDDYP-LQKKEHSLEFLRDIAHLRLRTNTLGAVMRVRNALSQAIHRYFQENGFTWVSPP 161 (453)
T ss_pred CEEEEEeEEEEEecCCccCCC-CCccccChhhHhhCcceecCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEecCC
Confidence 999999999999999622233 22334678899999999999999999999999999999999999999999999
|
In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn. |
| >PTZ00425 asparagine-tRNA ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4e-24 Score=239.30 Aligned_cols=151 Identities=23% Similarity=0.334 Sum_probs=126.6
Q ss_pred CccCCcEEEEEEEEEeeecCCC-ceEEEEEEeCCE--EEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCCC-----
Q psy8087 508 EKYRDKRVTIFGWVHRLRRQGK-GLMFVTLRDGSG--FIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEGK----- 579 (658)
Q Consensus 508 ~~~~g~~V~v~GwI~~~R~~Gk-kl~Fi~Lrd~~~--~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~----- 579 (658)
..+.|++|+|+|||+++|.+|+ +++|++|||++| .+|||++.....+..+..|+.||+|.|+|+++.++...
T Consensus 77 ~~~~g~~Vtl~GWv~~iR~~g~~~~~Fv~lrDgsg~~~iQiVv~~~~~~~~~l~~l~~gs~v~v~G~v~~~~~~~~n~~g 156 (586)
T PTZ00425 77 NKYIDQIITVCGWSKAVRKQGGGRFCFVNLNDGSCHLNLQIIVDQSIENYEKLLKCGVGCCFRFTGKLIISPVQNENKKG 156 (586)
T ss_pred cccCCCEEEEEEEEeehhhcCCceEEEEEEECCCCCcceEEEECCchHHHHHHhcCCCccEEEEEEEEEcCCccccCcCC
Confidence 4567999999999999999985 599999999998 49999976533445667899999999999998876331
Q ss_pred CCCCceEEEE-----EEEEEEecCCCCCCCcccCCCCChhhhcccceeeeechhhHHHHHHHHHHHHHHHHHhhcCCcEE
Q psy8087 580 SAPGGHELKV-----DYWEVVGLAPAGGADAILNEEALPDVQLDNRHIMIRGENTSRVLLMRSVLLQALRAHFADRNYTE 654 (658)
Q Consensus 580 ~~~g~~El~~-----~~i~vls~~~~~~~~~~~~~~~~~e~r~~~R~LdLR~~~~~~ifr~Rs~i~~~iR~fL~~~gF~E 654 (658)
..++++||.+ .+++||+.+......++.++.++.|+++++||||+|++.++++||+||.|..++|+||+++||+|
T Consensus 157 ~~~~~~El~~~~~~~~~~~ilg~~~d~~~yPi~~k~~~~e~lr~~rhL~lR~~~~~avlRiRs~l~~a~r~ff~~~gF~e 236 (586)
T PTZ00425 157 LLKENVELALKDNSIHNFEIYGENLDPQKYPLSKKNHGKEFLREVAHLRPRSYFISSVIRIRNALAIATHLFFQSRGFLY 236 (586)
T ss_pred CCCccEEEEEecCCCceEEEEeccCCCCCCCCCCccCChhhhhhccceeccCHHHHHHHHHHHHHHHHHHHHHHHCCCEE
Confidence 2357799998 79999998832111233445678999999999999999999999999999999999999999999
Q ss_pred ecCC
Q psy8087 655 VNIE 658 (658)
Q Consensus 655 VeTp 658 (658)
|+||
T Consensus 237 I~TP 240 (586)
T PTZ00425 237 IHTP 240 (586)
T ss_pred eeCC
Confidence 9999
|
|
| >PLN02603 asparaginyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.6e-24 Score=238.08 Aligned_cols=145 Identities=24% Similarity=0.327 Sum_probs=125.3
Q ss_pred CccCCcEEEEEEEEEeeecCCCceEEEEEEeCCE--EEEEEEcCCccchHHhc--cCCCCcEEEEEEEEEecCCCCCCCC
Q psy8087 508 EKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSG--FIQCVLADILCQTEHAL--LLSTESSVQFRGRIEKVPEGKSAPG 583 (658)
Q Consensus 508 ~~~~g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~--~iQvv~~~~~~~~~~~~--~L~~gs~V~V~G~v~~~~~~~~~~g 583 (658)
....|++|+|+|||+++|.+| +++|++|+|+++ .||||++.+...++.+. .|+.||+|.|+|+++.++. +++
T Consensus 103 ~~~~g~~V~v~GwV~~iR~~g-~~~Fi~l~Dgs~~~~lQ~v~~~~~~~~~~l~~~~l~~gs~V~V~G~v~~~~~---~~~ 178 (565)
T PLN02603 103 LARVGKTLNVMGWVRTLRAQS-SVTFIEVNDGSCLSNMQCVMTPDAEGYDQVESGLITTGASVLVQGTVVSSQG---GKQ 178 (565)
T ss_pred cccCCCEEEEEEEEEEEEeCC-CeEEEEEECCCCCEeEEEEEECcHHHHHHHhhcCCCCCCEEEEEEEEEecCC---CCc
Confidence 356799999999999999997 799999999997 59999986544444444 4999999999999998763 357
Q ss_pred ceEEEEEEEEEEecCCCCCCCcccCCCCChhhhcccceeeeechhhHHHHHHHHHHHHHHHHHhhcCCcEEecCC
Q psy8087 584 GHELKVDYWEVVGLAPAGGADAILNEEALPDVQLDNRHIMIRGENTSRVLLMRSVLLQALRAHFADRNYTEVNIE 658 (658)
Q Consensus 584 ~~El~~~~i~vls~~~~~~~~~~~~~~~~~e~r~~~R~LdLR~~~~~~ifr~Rs~i~~~iR~fL~~~gF~EVeTp 658 (658)
.+||+++++++|++|+. ++| +..+....+.++.++|||+|++.++++||+||+|++++|+||+++||+|||||
T Consensus 179 ~~EL~v~~i~vlg~a~~-~~P-i~~~~~s~e~lr~~~hLr~Rt~~~~ai~RiRS~i~~air~ff~~~gF~eV~TP 251 (565)
T PLN02603 179 KVELKVSKIVVVGKSDP-SYP-IQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFVWVSSP 251 (565)
T ss_pred cEEEEEeEEEEEECCCC-CCC-CcccccchhhhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECC
Confidence 79999999999999974 343 34455678999999999999999999999999999999999999999999999
|
|
| >PLN02532 asparagine-tRNA synthetase | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.2e-21 Score=214.24 Aligned_cols=130 Identities=19% Similarity=0.221 Sum_probs=111.6
Q ss_pred eecCCCceEEEEEEeCCEE--EEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCCCCCCCceEEEEEEEEEEecCCCC
Q psy8087 524 LRRQGKGLMFVTLRDGSGF--IQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEGKSAPGGHELKVDYWEVVGLAPAG 601 (658)
Q Consensus 524 ~R~~Gkkl~Fi~Lrd~~~~--iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~El~~~~i~vls~~~~~ 601 (658)
.|.+| +++|++|||++|. +|||+++...... ..|+.|++|.|+|+|+.++ ...++|++||.+++++||+++...
T Consensus 129 ~r~~g-~i~FI~LrDGSg~~~lQvVv~~~~~~~~--~~L~~Es~V~V~G~V~~~~-~~~~~g~iEl~v~~i~VLg~a~~~ 204 (633)
T PLN02532 129 APPPP-SVAYLLISDGSCVASLQVVVDSALAPLT--QLMATGTCILAEGVLKLPL-PAQGKHVIELEVEKILHIGTVDPE 204 (633)
T ss_pred cccCC-CcEEEEEECCCCccceEEEEeCCcccHh--hcCCCceEEEEEEEEEecC-CCCCCCcEEEEeeEEEEEecCCCC
Confidence 78887 7999999999998 9999986543222 5799999999999998863 234589999999999999987533
Q ss_pred CCCcccCCCCChhhhcccceeeeechhhHHHHHHHHHHHHHHHHHhhcCCcEEecCC
Q psy8087 602 GADAILNEEALPDVQLDNRHIMIRGENTSRVLLMRSVLLQALRAHFADRNYTEVNIE 658 (658)
Q Consensus 602 ~~~~~~~~~~~~e~r~~~R~LdLR~~~~~~ifr~Rs~i~~~iR~fL~~~gF~EVeTp 658 (658)
++| +.++.++.|+++++||||||++.++++||+||.|+++||+||+++||+||+||
T Consensus 205 p~P-i~~k~~~~E~LR~~RhLdLRt~~~~ailRiRS~i~~aiR~ff~~~GFiEV~TP 260 (633)
T PLN02532 205 KYP-LSKKRLPLDMLRDFSHFRPRTTTVASVTRVRSALTHATHTFFQDHGFLYVQVP 260 (633)
T ss_pred CCc-cccccCCHHHHhhCcceecCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEeeCC
Confidence 344 33445688999999999999999999999999999999999999999999999
|
|
| >cd04317 EcAspRS_like_N EcAspRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli aspartyl-tRNA synthetase (AspRS), the human mitochondrial (mt) AspRS-2, the discriminating (D) Thermus thermophilus AspRS-1, and the nondiscriminating (ND) Helicobacter pylori AspRS | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.4e-20 Score=175.97 Aligned_cols=117 Identities=30% Similarity=0.443 Sum_probs=96.7
Q ss_pred ccCCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCccc-hHHhccCCCCcEEEEEEEEEecCC----CCCCCC
Q psy8087 509 KYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILCQ-TEHALLLSTESSVQFRGRIEKVPE----GKSAPG 583 (658)
Q Consensus 509 ~~~g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~~~-~~~~~~L~~gs~V~V~G~v~~~~~----~~~~~g 583 (658)
...|+.|+|+|||+++|.+| +++|++|||+++.+||+++..... +.++..|+.||+|.|+|++..++. ..+++|
T Consensus 11 ~~~g~~V~i~Gwv~~~R~~g-k~~Fi~LrD~~g~~Q~v~~~~~~~~~~~~~~l~~gs~V~V~G~~~~~~~~~~~~~~~~~ 89 (135)
T cd04317 11 SHVGQEVTLCGWVQRRRDHG-GLIFIDLRDRYGIVQVVFDPEEAPEFELAEKLRNESVIQVTGKVRARPEGTVNPKLPTG 89 (135)
T ss_pred hHCCCEEEEEEeEehhcccC-CEEEEEEecCCeeEEEEEeCCchhHHHHHhCCCCccEEEEEEEEECCCccccCCCCCCC
Confidence 45689999999999999998 599999999999999999865333 466778999999999999987653 134568
Q ss_pred ceEEEEEEEEEEecCCCCCCCcccCC--CCChhhhcccceeeeechh
Q psy8087 584 GHELKVDYWEVVGLAPAGGADAILNE--EALPDVQLDNRHIMIRGEN 628 (658)
Q Consensus 584 ~~El~~~~i~vls~~~~~~~~~~~~~--~~~~e~r~~~R~LdLR~~~ 628 (658)
++||.++++++|++|. ++|....+ ..+.++|+++||||||++.
T Consensus 90 ~~El~~~~i~vl~~~~--~lP~~~~~~~~~~~~~r~~~R~LdLR~~~ 134 (135)
T cd04317 90 EIEVVASELEVLNKAK--TLPFEIDDDVNVSEELRLKYRYLDLRRPK 134 (135)
T ss_pred cEEEEEeEEEEEECCC--CCCCccccccCCCHHHhhhcceeecCCCC
Confidence 8999999999999993 45544432 3578999999999999864
|
These homodimeric enzymes are class2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic synthesis, wh |
| >cd04322 LysRS_N LysRS_N: N-terminal, anticodon recognition domain of lysyl-tRNA synthetases (LysRS) | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.5e-20 Score=163.78 Aligned_cols=104 Identities=18% Similarity=0.165 Sum_probs=87.6
Q ss_pred EEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCc---cchHHhcc-CCCCcEEEEEEEEEecCCCCCCCCceEEEE
Q psy8087 514 RVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADIL---CQTEHALL-LSTESSVQFRGRIEKVPEGKSAPGGHELKV 589 (658)
Q Consensus 514 ~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~---~~~~~~~~-L~~gs~V~V~G~v~~~~~~~~~~g~~El~~ 589 (658)
+|+|+|||+++|.+| +++|++|||+++.+||+++... ..+..+.. |++||+|.|+|++..++ +|++||.+
T Consensus 1 ~v~v~GwV~~~R~~g-~~~Fi~lrd~~~~lQ~v~~~~~~~~~~~~~~~~~l~~g~~V~v~G~v~~~~-----~g~~El~~ 74 (108)
T cd04322 1 EVSVAGRIMSKRGSG-KLSFADLQDESGKIQVYVNKDDLGEEEFEDFKKLLDLGDIIGVTGTPFKTK-----TGELSIFV 74 (108)
T ss_pred CEEEEEEEEEEecCC-CeEEEEEEECCeEEEEEEECCCCCHHHHHHHHhcCCCCCEEEEEEEEEecC-----CCCEEEEe
Confidence 489999999999998 5999999999999999997653 33433344 99999999999998766 58899999
Q ss_pred EEEEEEecCCCCCCCcccCCCCChhhhcccceeee
Q psy8087 590 DYWEVVGLAPAGGADAILNEEALPDVQLDNRHIMI 624 (658)
Q Consensus 590 ~~i~vls~~~~~~~~~~~~~~~~~e~r~~~R~LdL 624 (658)
+++++|++|.. |+|...++..+.++|+++|||||
T Consensus 75 ~~~~ils~~~~-plP~~~~~~~~~~~r~~~R~ldl 108 (108)
T cd04322 75 KEFTLLSKSLR-PLPEKFHGLTDVETRYRQRYLDL 108 (108)
T ss_pred CEeEEeeccCC-CCCCCccCcCChhheeecccccC
Confidence 99999999963 45555555678999999999996
|
These enzymes are homodimeric class 2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Included in this group are E. coli LysS and LysU. These two isoforms of LysRS are encoded by distinct genes which are differently regulated. Eukaryotes contain 2 sets of aaRSs, both of which encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein |
| >KOG2411|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.9e-20 Score=193.34 Aligned_cols=149 Identities=22% Similarity=0.278 Sum_probs=125.3
Q ss_pred CccCCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCccc--hHHhccCCCCcEEEEEEEEEecCC----CCCC
Q psy8087 508 EKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILCQ--TEHALLLSTESSVQFRGRIEKVPE----GKSA 581 (658)
Q Consensus 508 ~~~~g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~~~--~~~~~~L~~gs~V~V~G~v~~~~~----~~~~ 581 (658)
....|++|.+|||+...|.++ .+.|..|||..|.+|+.++.+... ......++.||+|.|.|++..++. ++++
T Consensus 43 ~~~vg~kv~l~GWl~~~~~~k-~~~F~~LRD~~G~vq~lls~~s~~l~~~~~~~v~~e~vv~v~gtvv~Rp~~sin~km~ 121 (628)
T KOG2411|consen 43 VNDVGKKVVLCGWLELHRVHK-MLTFFNLRDAYGIVQQLLSPDSFPLAQKLENDVPLEDVVQVEGTVVSRPNESINSKMK 121 (628)
T ss_pred cCccCCEEEEeeeeeeeeccc-cceEEEeeccCcceEEEecchhhhHHhcccCCCChhheEeeeeeEecccccccCcccc
Confidence 456899999999999999994 899999999999999999876532 233456999999999999998853 2677
Q ss_pred CCceEEEEEEEEEEecCCCCCCCccc------CCCCChhhhcccceeeeechhhHHHHHHHHHHHHHHHHHhhc-CCcEE
Q psy8087 582 PGGHELKVDYWEVVGLAPAGGADAIL------NEEALPDVQLDNRHIMIRGENTSRVLLMRSVLLQALRAHFAD-RNYTE 654 (658)
Q Consensus 582 ~g~~El~~~~i~vls~~~~~~~~~~~------~~~~~~e~r~~~R~LdLR~~~~~~ifr~Rs~i~~~iR~fL~~-~gF~E 654 (658)
+|.+|+.++++++++++..+ +|... .......+|+++||||||.+.++..+|+||.++..+|+||.+ +||+|
T Consensus 122 tg~vev~~e~~~vln~~~~~-~p~~v~df~~ld~~~~er~rl~~RyldLR~~kmq~nLrlRS~~v~~iR~yl~n~~GFve 200 (628)
T KOG2411|consen 122 TGFVEVVAEKVEVLNPVNKK-LPFEVTDFKELDDLAGERIRLRFRYLDLRRPKMQNNLRLRSNVVKKIRRYLNNRHGFVE 200 (628)
T ss_pred ccceEEEeeeeEEecCccCC-CccchhhhhhhhccccccccchhhhhhhccHHHHHHHHHHHHHHHHHHHHHhhhcCeee
Confidence 89999999999999998643 23222 123566889999999999999999999999999999999966 56999
Q ss_pred ecCC
Q psy8087 655 VNIE 658 (658)
Q Consensus 655 VeTp 658 (658)
||||
T Consensus 201 vETP 204 (628)
T KOG2411|consen 201 VETP 204 (628)
T ss_pred ccCc
Confidence 9998
|
|
| >cd04319 PhAsnRS_like_N PhAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Pyrococcus horikoshii AsnRS asparaginyl-tRNA synthetase (AsnRS) | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.2e-17 Score=147.18 Aligned_cols=101 Identities=34% Similarity=0.503 Sum_probs=83.8
Q ss_pred EEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCc--cchHHhccCCCCcEEEEEEEEEecCCCCCCCCceEEEEEE
Q psy8087 514 RVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADIL--CQTEHALLLSTESSVQFRGRIEKVPEGKSAPGGHELKVDY 591 (658)
Q Consensus 514 ~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~--~~~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~El~~~~ 591 (658)
+|+|+|||+++|.+| |++|++|||++|.+||+++.+. ..+..+..|+.||+|.|+|++..++. ..+++||.+++
T Consensus 1 ~V~v~Gwv~~~R~~g-k~~Fi~lrD~~g~iQ~v~~~~~~~~~~~~~~~l~~~s~v~V~G~v~~~~~---~~~~~Ei~~~~ 76 (103)
T cd04319 1 KVTLAGWVYRKREVG-KKAFIVLRDSTGIVQAVFSKDLNEEAYREAKKVGIESSVIVEGAVKADPR---APGGAEVHGEK 76 (103)
T ss_pred CEEEEEEEEeEEcCC-CeEEEEEecCCeeEEEEEeCCCCHHHHHHHhCCCCCCEEEEEEEEEECCC---CCCCEEEEEEE
Confidence 489999999999998 6899999999999999998642 22455678999999999999988763 35689999999
Q ss_pred EEEEecCCCCCCCcccCCCCChhhhccccee
Q psy8087 592 WEVVGLAPAGGADAILNEEALPDVQLDNRHI 622 (658)
Q Consensus 592 i~vls~~~~~~~~~~~~~~~~~e~r~~~R~L 622 (658)
++++++|. ++|.. . ..+.++++++|||
T Consensus 77 i~vl~~a~--~~pi~-~-~~~~~~~~~~rhL 103 (103)
T cd04319 77 LEIIQNVE--FFPIT-E-DASDEFLLDVRHL 103 (103)
T ss_pred EEEEecCC--CCccC-C-CCCHHHHhhccCC
Confidence 99999985 33332 2 3489999999997
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The archeal enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. |
| >KOG0554|consensus | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.4e-17 Score=168.77 Aligned_cols=140 Identities=26% Similarity=0.397 Sum_probs=125.2
Q ss_pred CccCCcEEEEEEEEEeeecCCCceEEEEEEeCCEE--EEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCCCCCCCce
Q psy8087 508 EKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGF--IQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEGKSAPGGH 585 (658)
Q Consensus 508 ~~~~g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~--iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~ 585 (658)
....|++++|.|||.++|..| +.+|+++.||+.. +|||++. ...+.+..|++|.|+|.+..+ +...+++
T Consensus 16 ~~~~g~~~~i~GWvKsvr~~~-~~~Fl~i~DGs~~~~lQvVv~~-----~~~q~la~Gt~i~~~g~l~~~---~~~~q~i 86 (446)
T KOG0554|consen 16 HPRAGDTISIGGWVKSVRKLK-KVTFLDINDGSCPSPLQVVVDS-----EQSQLLATGTCISAEGVLKVS---KGAKQQI 86 (446)
T ss_pred CCCCCCceeecchhhhccccc-ceEEEEecCCCCCcceEEEech-----HHhhhccccceEEEEeeEEec---cchheee
Confidence 345689999999999999997 7999999999985 9999987 345679999999999999775 4567899
Q ss_pred EEEEEEEEEEecCCCCCCCcccCCCCChhhhcccceeeeechhhHHHHHHHHHHHHHHHHHhhcCCcEEecCC
Q psy8087 586 ELKVDYWEVVGLAPAGGADAILNEEALPDVQLDNRHIMIRGENTSRVLLMRSVLLQALRAHFADRNYTEVNIE 658 (658)
Q Consensus 586 El~~~~i~vls~~~~~~~~~~~~~~~~~e~r~~~R~LdLR~~~~~~ifr~Rs~i~~~iR~fL~~~gF~EVeTp 658 (658)
|+.++++.+++.+... +++.++...++..++.-||..|++.+.+++|+||++..++++||++++|++|+||
T Consensus 87 el~~eki~~vG~v~~~--ypl~Kk~lt~e~LR~~~HLR~Rt~~~~av~RvRs~~~~a~h~ffq~~~F~~i~tP 157 (446)
T KOG0554|consen 87 ELNAEKIKVVGTVDES--YPLQKKKLTPEMLRDKLHLRSRTAKVGAVLRVRSALAFATHSFFQSHDFTYINTP 157 (446)
T ss_pred eeeeeEEEEEeecCCC--CCCccccCCHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHcCceEecCc
Confidence 9999999999998642 5566667889999999999999999999999999999999999999999999998
|
|
| >cd04320 AspRS_cyto_N AspRS_cyto_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae and human cytoplasmic aspartyl-tRNA synthetase (AspRS) | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.9e-16 Score=137.24 Aligned_cols=86 Identities=36% Similarity=0.329 Sum_probs=72.9
Q ss_pred EEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCc----cc-hHHhccCCCCcEEEEEEEEEecCCC--CCCCCceE
Q psy8087 514 RVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADIL----CQ-TEHALLLSTESSVQFRGRIEKVPEG--KSAPGGHE 586 (658)
Q Consensus 514 ~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~----~~-~~~~~~L~~gs~V~V~G~v~~~~~~--~~~~g~~E 586 (658)
.|+|+|||+++|.+|++++|++|||+++.+||+++... .. +.++..|+.||+|.|+|++..++.. ..+++++|
T Consensus 1 ~V~i~Gwv~~~R~~g~k~~Fi~LrD~sg~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~~~~~~E 80 (102)
T cd04320 1 EVLIRARVHTSRAQGAKLAFLVLRQQGYTIQGVLAASAEGVSKQMVKWAGSLSKESIVDVEGTVKKPEEPIKSCTQQDVE 80 (102)
T ss_pred CEEEEEEEEEeecCCCceEEEEEecCCceEEEEEeCCcccCCHHHHHHHhcCCCccEEEEEEEEECCCCcccCCCcCcEE
Confidence 38999999999999978999999999999999998653 11 3566789999999999999886532 12358999
Q ss_pred EEEEEEEEEecCC
Q psy8087 587 LKVDYWEVVGLAP 599 (658)
Q Consensus 587 l~~~~i~vls~~~ 599 (658)
|+++++++|++|.
T Consensus 81 l~~~~i~il~~~~ 93 (102)
T cd04320 81 LHIEKIYVVSEAA 93 (102)
T ss_pred EEEEEEEEEecCC
Confidence 9999999999985
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. |
| >cd04316 ND_PkAspRS_like_N ND_PkAspRS_like_N: N-terminal, anticodon recognition domain of the type found in the homodimeric non-discriminating (ND) Pyrococcus kodakaraensis aspartyl-tRNA synthetase (AspRS) | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.3e-15 Score=135.33 Aligned_cols=88 Identities=33% Similarity=0.531 Sum_probs=76.0
Q ss_pred ccCCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCcc---chHHhccCCCCcEEEEEEEEEecCCCCCCCCce
Q psy8087 509 KYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILC---QTEHALLLSTESSVQFRGRIEKVPEGKSAPGGH 585 (658)
Q Consensus 509 ~~~g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~~---~~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~ 585 (658)
...|+.|+|+|||+++|.+| +++|++|||+++.+||+++.... .+.++..|+.||+|.|+|++..++. ..+++
T Consensus 9 ~~~g~~V~v~Gwv~~~R~~g-~~~Fi~LrD~~g~iQ~v~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~---~~~~~ 84 (108)
T cd04316 9 ELDGEEVTVAGWVHEIRDLG-GIKFVILRDREGIVQVTAPKKKVDKELFKTVRKLSRESVISVTGTVKAEPK---APNGV 84 (108)
T ss_pred hhCCCEEEEEEEEEeeeccC-CeEEEEEecCCeeEEEEEeCCCCCHHHHHHHhCCCCcCEEEEEEEEEeCCC---CCCCE
Confidence 45689999999999999998 69999999999999999985421 2467788999999999999988763 35789
Q ss_pred EEEEEEEEEEecCCC
Q psy8087 586 ELKVDYWEVVGLAPA 600 (658)
Q Consensus 586 El~~~~i~vls~~~~ 600 (658)
||.++++++|++++.
T Consensus 85 Ei~~~~i~il~~~~~ 99 (108)
T cd04316 85 EIIPEEIEVLSEAKT 99 (108)
T ss_pred EEEEeEEEEEeCCCC
Confidence 999999999999863
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. P. kodakaraensis AspRS is a class 2b aaRS. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. P. kodakaraensis ND-AspRS can charge both tRNAAsp and tRNAAsn. Some of the enzymes in this group may be discriminating, based on the presence of homologs of asparaginyl-tRNA synthetase (AsnRS) in their completed genomes. |
| >cd04321 ScAspRS_mt_like_N ScAspRS_mt_like_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae mitochondrial (mt) aspartyl-tRNA synthetase (AspRS) | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.3e-15 Score=128.72 Aligned_cols=84 Identities=31% Similarity=0.381 Sum_probs=70.5
Q ss_pred EEEEEEEEEeeecCCCceEEEEEEeCCE-EEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCCC-CCCCceEEEEEE
Q psy8087 514 RVTIFGWVHRLRRQGKGLMFVTLRDGSG-FIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEGK-SAPGGHELKVDY 591 (658)
Q Consensus 514 ~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~-~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~-~~~g~~El~~~~ 591 (658)
+|+|+|||+++|.++++++|++|||+++ .+||+++.+...++.+..|+.||+|.|+|++..++... .++|++||.+++
T Consensus 1 ~V~v~Gwv~~~R~~~~~~~Fi~LrD~~g~~iQvv~~~~~~~~~~~~~l~~~s~V~V~G~v~~~~~~~~~~~~~~Ei~~~~ 80 (86)
T cd04321 1 KVTLNGWIDRKPRIVKKLSFADLRDPNGDIIQLVSTAKKDAFSLLKSITAESPVQVRGKLQLKEAKSSEKNDEWELVVDD 80 (86)
T ss_pred CEEEEEeEeeEeCCCCceEEEEEECCCCCEEEEEECCCHHHHHHHhcCCCCcEEEEEEEEEeCCCcCCCCCCCEEEEEEE
Confidence 4899999999999545899999999999 69999986544456667899999999999999877322 345999999999
Q ss_pred EEEEec
Q psy8087 592 WEVVGL 597 (658)
Q Consensus 592 i~vls~ 597 (658)
+++|++
T Consensus 81 i~il~~ 86 (86)
T cd04321 81 IQTLNA 86 (86)
T ss_pred EEEecC
Confidence 999974
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this fungal group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. Mutations in the gene for |
| >cd04100 Asp_Lys_Asn_RS_N Asp_Lys_Asn_RS_N: N-terminal, anticodon recognition domain of class 2b aminoacyl-tRNA synthetases (aaRSs) | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.3e-15 Score=127.65 Aligned_cols=83 Identities=45% Similarity=0.654 Sum_probs=72.1
Q ss_pred EEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCccc--hHHhccCCCCcEEEEEEEEEecCCCCCCCCceEEEEEE
Q psy8087 514 RVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILCQ--TEHALLLSTESSVQFRGRIEKVPEGKSAPGGHELKVDY 591 (658)
Q Consensus 514 ~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~~~--~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~El~~~~ 591 (658)
.|+|+|||+++|.+| +++|++|||+++.+||+++.+... ++.+..|+.||+|.|+|++..++.+..+++++||.+++
T Consensus 1 ~V~i~Gwv~~~R~~g-~~~Fi~Lrd~~~~iQ~v~~~~~~~~~~~~~~~l~~~s~V~v~G~~~~~~~~~~~~~~~El~~~~ 79 (85)
T cd04100 1 EVTLAGWVHSRRDHG-GLIFIDLRDGSGIVQVVVNKEELGEFFEEAEKLRTESVVGVTGTVVKRPEGNLATGEIELQAEE 79 (85)
T ss_pred CEEEEEEEehhccCC-CEEEEEEEeCCeeEEEEEECCcChHHHHHHhCCCCCCEEEEEeEEEECCCCCCCCCCEEEEEeE
Confidence 389999999999998 599999999999999999865432 46778899999999999999877444467999999999
Q ss_pred EEEEec
Q psy8087 592 WEVVGL 597 (658)
Q Consensus 592 i~vls~ 597 (658)
+++|++
T Consensus 80 i~il~~ 85 (85)
T cd04100 80 LEVLSK 85 (85)
T ss_pred EEEECC
Confidence 999975
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. Class 2b aaRSs include the homodimeric aspartyl-, asparaginyl-, and lysyl-tRNA synthetases (AspRS, AsnRS, and LysRS). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. Included in this group are archeal and archeal-like A |
| >cd04323 AsnRS_cyto_like_N AsnRS_cyto_like_N: N-terminal, anticodon recognition domain of the type found in human and Saccharomyces cerevisiae cytoplasmic asparaginyl-tRNA synthetase (AsnRS), in Brugia malayai AsnRs and, in various putative bacterial AsnRSs | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.3e-15 Score=125.97 Aligned_cols=83 Identities=54% Similarity=0.943 Sum_probs=71.1
Q ss_pred EEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCccc-hHHhccCCCCcEEEEEEEEEecCCCCCCCCceEEEEEEE
Q psy8087 514 RVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILCQ-TEHALLLSTESSVQFRGRIEKVPEGKSAPGGHELKVDYW 592 (658)
Q Consensus 514 ~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~~~-~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~El~~~~i 592 (658)
+|+|+|||+++|.+| +++|++|||+++.+|++++.+... ++++..|+.||+|.|+|++..++.+...++++||.++++
T Consensus 1 ~V~v~Gwv~~~R~~g-~~~Fi~LrD~~~~iQ~v~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~~~~Ei~~~~i 79 (84)
T cd04323 1 RVKVFGWVHRLRSQK-KLMFLVLRDGTGFLQCVLSKKLVTEFYDAKSLTQESSVEVTGEVKEDPRAKQAPGGYELQVDYL 79 (84)
T ss_pred CEEEEEEEEEEecCC-CcEEEEEEcCCeEEEEEEcCCcchhHHHHhcCCCcCEEEEEEEEEECCcccCCCCCEEEEEEEE
Confidence 489999999999997 799999999999999999865332 566788999999999999998774433367899999999
Q ss_pred EEEec
Q psy8087 593 EVVGL 597 (658)
Q Consensus 593 ~vls~ 597 (658)
++|++
T Consensus 80 ~vl~~ 84 (84)
T cd04323 80 EIIGE 84 (84)
T ss_pred EEEcC
Confidence 99974
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic synthesis, whereas the other exclusively with |
| >cd04318 EcAsnRS_like_N EcAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli asparaginyl-tRNA synthetase (AsnRS) and, in Arabidopsis thaliana and Saccharomyces cerevisiae mitochondrial (mt) AsnRS | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.4e-14 Score=120.50 Aligned_cols=79 Identities=37% Similarity=0.556 Sum_probs=68.9
Q ss_pred EEEEEEEEEeeecCCCceEEEEEEeCCEE--EEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCCCCCCCceEEEEEE
Q psy8087 514 RVTIFGWVHRLRRQGKGLMFVTLRDGSGF--IQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEGKSAPGGHELKVDY 591 (658)
Q Consensus 514 ~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~--iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~El~~~~ 591 (658)
.|+|+|||+++|.+| +++|++|||+++. +||+++.+...++.+..|+.||+|.|+|++..++. +++++||.+++
T Consensus 1 ~v~v~Gwv~~~R~~g-~~~Fi~LrD~s~~~~lQvv~~~~~~~~~~~~~l~~gs~V~v~G~v~~~~~---~~~~~El~~~~ 76 (82)
T cd04318 1 EVTVNGWVRSVRDSK-KISFIELNDGSCLKNLQVVVDKELTNFKEILKLSTGSSIRVEGVLVKSPG---AKQPFELQAEK 76 (82)
T ss_pred CEEEEEeEEEEEcCC-cEEEEEEECCCCccCEEEEEeCcccCHHHHhcCCCceEEEEEEEEEeCCC---CCCCEEEEEEE
Confidence 379999999999997 7999999999995 99999876444566788999999999999998762 25899999999
Q ss_pred EEEEe
Q psy8087 592 WEVVG 596 (658)
Q Consensus 592 i~vls 596 (658)
+++++
T Consensus 77 i~il~ 81 (82)
T cd04318 77 IEVLG 81 (82)
T ss_pred EEEec
Confidence 99986
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial |
| >TIGR02367 PylS pyrrolysyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=99.45 E-value=9.4e-13 Score=142.24 Aligned_cols=97 Identities=18% Similarity=0.258 Sum_probs=71.0
Q ss_pred CchHHHhhhCCcEEEcCCcccccc------CCCCc----cceeeccCCcceeec--cCHHHHHHHhc----cc-CCcEEE
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQ------VEGGS----TLFSLNFFGEPAYLT--QSSQLYLETCL----PA-LGDVYC 222 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~------~eG~~----~~F~~~~~~~~~~L~--~Spqlylk~li----~g-~~rvfe 222 (658)
..||++|...||.||.||+|+... .+++. +.|. ++...+|| +.|+|+.-... .. --|+||
T Consensus 247 d~IRevfvg~GFqEV~TPtLt~eE~~E~m~~~~g~eI~n~Iyk---~ee~lvLRPdLTPsLaR~La~N~~~l~~PqKIFE 323 (453)
T TIGR02367 247 RDITKFFVDRGFLEIKSPILIPAEYIERMGIDNDTELSKQIFR---VDKNFCLRPMLAPNLYNYLRKLDRALPDPIKIFE 323 (453)
T ss_pred HHHHHHHHHCCCEEEECCeecchHHHHhhcCccCCcccccceE---ecCceEecccCHHHHHHHHHHhhhhccCCeeEEE
Confidence 599999999999999999995211 11111 2333 35568999 88998854322 12 359999
Q ss_pred EeeeeecCCCCCccCcceeeeeeeEeecC--CHHHHHHHH
Q psy8087 223 IAQSYRAENSRTRRHLAEYTHVEAECAFL--TFDDLLDKL 260 (658)
Q Consensus 223 I~~~FR~E~~~~~rHl~EFt~lE~e~a~~--d~~~~m~~~ 260 (658)
||+|||+|..+ .+|+.||+|++++.+.. ++.|+..++
T Consensus 324 IGkVFR~E~~~-~thlREF~QL~~eIaG~~atfaDlealL 362 (453)
T TIGR02367 324 IGPCYRKESDG-KEHLEEFTMLNFCQMGSGCTRENLEAII 362 (453)
T ss_pred EcCeEecCCCC-CCCcCeEEEEEEEEECCCCCHHHHHHHH
Confidence 99999999874 58999999999999876 466666433
|
PylS is the archaeal enzyme responsible for charging the pyrrolysine tRNA, PylT, by ligating a free molecule of pyrrolysine. Pyrrolysine is encoded at an in-frame UAG (amber) at least in several corrinoid-dependent methyltransferases of the archaeal genera Methanosarcina and Methanococcoides, such as trimethylamine methyltransferase. |
| >cd00645 AsnA Asparagine synthetase (aspartate-ammonia ligase) (AsnA) catalyses the conversion of L-aspartate to L-asparagine in the presence of ATP and ammonia | Back alignment and domain information |
|---|
Probab=99.42 E-value=3e-12 Score=130.60 Aligned_cols=256 Identities=17% Similarity=0.237 Sum_probs=163.4
Q ss_pred hhCCcEEEcCCccccccCC------CCccc--eeeccC-CcceeeccCHHHHHHHhcc--cC---CcEEEEeeeee-cCC
Q psy8087 167 LANGIAKVTPPTLVQTQVE------GGSTL--FSLNFF-GEPAYLTQSSQLYLETCLP--AL---GDVYCIAQSYR-AEN 231 (658)
Q Consensus 167 ~~~gF~EV~TPiL~~~~~e------G~~~~--F~~~~~-~~~~~L~~Spqlylk~li~--g~---~rvfeI~~~FR-~E~ 231 (658)
.+.+.+.|..|+++....+ |--+| |.+..+ +..+-.-+|---|+.+++. || +.+|.=..+.| +|+
T Consensus 17 ~~LnL~rvsaPlfv~~~sGlnD~LnG~E~pV~f~~k~~~~~~~eiVhSLAKWKR~aL~~y~f~~geGlytdMnAiR~dE~ 96 (309)
T cd00645 17 KELNLIRVSAPLFVEKGSGLNDNLNGVEKPVSFKVKALPDATLEVVHSLAKWKRLALARYGFSLGEGLYTDMNAIRPDED 96 (309)
T ss_pred HHhCeEEecCCeEEecCCCCccCCCCcccceEeecCCCCCceeEEeeehHHHHHHHHHhcCCCCCceeccCCccccCCcc
Confidence 3468999999999755442 11223 555444 5677788888899998886 65 66888777666 567
Q ss_pred CCCccCcceeeeeeeEeecCCHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCCCcceeeHHHHHHHHHHcCCC
Q psy8087 232 SRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGDLVRQMNPNFEPPARPFLRMNYADAIEYLRKHEIR 311 (658)
Q Consensus 232 ~~~~rHl~EFt~lE~e~a~~d~~~~m~~~e~li~~i~~~~~~~~~~~~~~~~~~~~~~~~pf~rit~~ea~~~l~~~g~~ 311 (658)
. ++.|.-=--|-|||.....-+.-++.+.+.++.++..+..........+ +.+.. ..| ..|+|..+-++...+
T Consensus 97 l-dn~HS~yVDQWDWEkvI~~~~R~~~~Lk~tV~~iy~~ik~te~~~~~~y-~~~~~-~Lp-~~i~FitsqeL~~~Y--- 169 (309)
T cd00645 97 L-DNIHSIYVDQWDWEKVISKGERNLETLKETVNKIYKAIKETELEVNEKY-PQLEP-ILP-EEITFITSQELEDRY--- 169 (309)
T ss_pred c-CccceeEeccccHHhhcCccccCHHHHHHHHHHHHHHHHHHHHHHHHHc-hhhhh-cCC-CceEEecHHHHHHHC---
Confidence 6 4589866777788877665555566666666666666654332111111 11100 011 245665555544332
Q ss_pred CCCCCCcccCCCCCCchhhhhhcccCCcEEEEeCCCCCCCCCCccC----CCCcCceeEEEEEe------CCcceeeece
Q psy8087 312 KPDNTEYEFGEDIPEMPERKMTDQINRPIMLCRFPADIKSFYMSKC----PENPALTESVDVLF------PNVGEVIGGS 381 (658)
Q Consensus 312 ~~~~~~~~~g~~l~~~~e~~l~~~~~~p~fi~~~P~~~~pfy~~~~----~~~~~~~~~fdL~~------~G~~Ei~~G~ 381 (658)
|++ =...=|..+.+. ..-|||+.---.++- -++| |+...+...=|+++ ..+ ||.+++
T Consensus 170 -P~l--------~~keRE~~i~ke-~gaVFi~~IG~~L~~--g~~Hd~RapDYDDW~LNGDil~w~~~l~~a~-ELSSmG 236 (309)
T cd00645 170 -PDL--------TPKEREDAICKE-HGAVFIIGIGGKLSD--GKKHDGRAPDYDDWTLNGDILVWNPVLQRAF-ELSSMG 236 (309)
T ss_pred -CCC--------CHHHHHHHHHHH-hCcEEEEeccCcCCC--CCcCCCCCCCCcCccccceEEEEchhcCcee-eecCcc
Confidence 111 112223344433 235677664332221 1222 23334455555544 377 999999
Q ss_pred eccCCHHHHHHHHHHcC-CCCCCCcchHHHhhcC-CCCccceecchhHHHHHHhcccCcchhhHH
Q psy8087 382 MRIWDPEELLAGYKREG-IDPAPYYWYTDQRKYG-STPHGGYGLGLERVLCWLLNQYHVRDKYQL 444 (658)
Q Consensus 382 ~r~~d~~~~~~~~~~~g-~~~~~~~~yl~a~~~G-~pP~gG~GiGidRL~m~l~g~~~Irdvi~f 444 (658)
+|.+. +.+.++++..| .+...+.| ++++..| +|||+|+|||+|||+|+|+|..+|.+|.+=
T Consensus 237 iRVde-e~L~~Ql~~~g~~dr~~l~~-h~~ll~g~LP~TiGgGIGqsRL~M~LL~k~HIgEVqas 299 (309)
T cd00645 237 IRVDE-ESLQKQLKLAGDEDRLELPF-HKMLLNGELPQTIGGGIGQSRLCMFLLQKAHIGEVQAS 299 (309)
T ss_pred eEecH-HHHHHHHHHcCCCccccCHH-HHHHHcCCCCccccccccHHHHHHHHhccchhcceeec
Confidence 99999 99999999988 46566665 9999999 999999999999999999999999999764
|
AsnA is a homodimeric enzyme which is structurally similiar to the catalytic core domain of class II aminoacyl-tRNA synthetases. Ammonia-dependent AsnA is not homologous to the glutamine-dependent asparagine synthetase AsnB. |
| >PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.3e-12 Score=141.70 Aligned_cols=174 Identities=18% Similarity=0.265 Sum_probs=116.4
Q ss_pred CchHHHhhhCCcEEEcCCccccccC------CCCc----cceeeccCCcceeec--cCHHHHHHHhc----c-cCCcEEE
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV------EGGS----TLFSLNFFGEPAYLT--QSSQLYLETCL----P-ALGDVYC 222 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~------eG~~----~~F~~~~~~~~~~L~--~Spqlylk~li----~-g~~rvfe 222 (658)
.+||++|...||.||.||+|+.... .++. ..|. .+...+|| ..|.|+..... . .--|+||
T Consensus 211 ~aIR~~f~~~GF~EV~TPtLt~ee~~e~~g~~~g~~i~~~my~---ideel~LRpsLtPsLlr~la~n~k~~~~P~RIFE 287 (417)
T PRK09537 211 RDITKFFVDRGFLEIKSPILIPAEYIERMGIDNDTELSKQIFR---VDKNFCLRPMLAPGLYNYLRKLDRILPDPIKIFE 287 (417)
T ss_pred HHHHHHHHHCCCEEEECCeeecHHHHHHhCCCCcccchhhhee---eCCceEehhhhHHHHHHHHHhhhhcccCCeeEEE
Confidence 5999999999999999999963210 1111 1222 35678999 68998875431 1 1258999
Q ss_pred EeeeeecCCCCCccCcceeeeeeeEeecCC--HHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCCCcceeeHHH
Q psy8087 223 IAQSYRAENSRTRRHLAEYTHVEAECAFLT--FDDLLDKLEDLICDTVDRVMATHGDLVRQMNPNFEPPARPFLRMNYAD 300 (658)
Q Consensus 223 I~~~FR~E~~~~~rHl~EFt~lE~e~a~~d--~~~~m~~~e~li~~i~~~~~~~~~~~~~~~~~~~~~~~~pf~rit~~e 300 (658)
||+|||+|.. +.+|++||+|++++....+ +.|++.++++++..+
T Consensus 288 IG~VFR~E~~-g~~hlrEf~Ql~~~iiGs~~~f~dL~~lleeLL~~L--------------------------------- 333 (417)
T PRK09537 288 IGPCYRKESD-GKEHLEEFTMVNFCQMGSGCTRENLENIIDDFLKHL--------------------------------- 333 (417)
T ss_pred EeceEecCCC-CCCCcceEEEEEEEEeCCchHHHHHHHHHHHHHHHC---------------------------------
Confidence 9999999986 4589999999999998653 556555544444321
Q ss_pred HHHHHHHcCCCCCCCCCcccCCCCCCchhhhhhcccCCcEEEEeCCCCCCCCCCccCCCCcCceeEEEEEeCCcceeeec
Q psy8087 301 AIEYLRKHEIRKPDNTEYEFGEDIPEMPERKMTDQINRPIMLCRFPADIKSFYMSKCPENPALTESVDVLFPNVGEVIGG 380 (658)
Q Consensus 301 a~~~l~~~g~~~~~~~~~~~g~~l~~~~e~~l~~~~~~p~fi~~~P~~~~pfy~~~~~~~~~~~~~fdL~~~G~~Ei~~G 380 (658)
|++. ... +...| . . ...-|+.++|. ||++|
T Consensus 334 --------GI~f---------------------------~i~-----s~~~f-i-~-------GR~adI~~g~~-el~~G 363 (417)
T PRK09537 334 --------GIDY---------------------------EII-----GDNCM-V-Y-------GDTIDIMHGDL-ELSSA 363 (417)
T ss_pred --------CCCc---------------------------EEe-----cCCcc-e-e-------cCeEEEEeCCE-EEeeE
Confidence 2100 000 00111 1 1 12457777776 99777
Q ss_pred eeccCCHHHHHHHHHHcCCCCCCCcchHHHhhcCCCCccceecchhHHHHHHhcccCcchh
Q psy8087 381 SMRIWDPEELLAGYKREGIDPAPYYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRDK 441 (658)
Q Consensus 381 ~~r~~d~~~~~~~~~~~g~~~~~~~~yl~a~~~G~pP~gG~GiGidRL~m~l~g~~~Irdv 441 (658)
...+-+ -++..|++ -|..+||||+|||+|+..|.+|||..
T Consensus 364 ~fGEi~------VLe~fGI~---------------~PVva~EIdLerL~~~~~g~~~ir~~ 403 (417)
T PRK09537 364 VVGPIP------LDREWGID---------------KPWIGAGFGLERLLKVKHGYKNIKRA 403 (417)
T ss_pred EEEEEe------hhhhcCCC---------------CceEEEEEeHHHHHHHHhCcHHHHHh
Confidence 777662 33333443 27999999999999999999999985
|
|
| >cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.9e-12 Score=128.75 Aligned_cols=93 Identities=19% Similarity=0.165 Sum_probs=69.4
Q ss_pred CchHHHhhhCCcEEEcCCccccccC-CCCc---c-ce-eeccCCcceeeccCHHHHHHHhccc-----CCcEEEEeeeee
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV-EGGS---T-LF-SLNFFGEPAYLTQSSQLYLETCLPA-----LGDVYCIAQSYR 228 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~-eG~~---~-~F-~~~~~~~~~~L~~Spqlylk~li~g-----~~rvfeI~~~FR 228 (658)
+.+|++|...||.||.||.|+.... +... . .. .....+...+||.|+...+..++.. --|+||||+|||
T Consensus 7 ~~~r~~l~~~Gf~Ev~t~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~LR~s~~~~l~~~~~~n~~~~~~~lfeig~vfr 86 (211)
T cd00768 7 QKLRRFMAELGFQEVETPIVEREPLLEKAGHEPKDLLPVGAENEEDLYLRPTLEPGLVRLFVSHIRKLPLRLAEIGPAFR 86 (211)
T ss_pred HHHHHHHHHcCCEEeEcceecHHHHHHHcCccHhheeeeecCCCCEEEECCCCcHHHHHHHHhhcccCCEEEEEEcceee
Confidence 4689999999999999999965311 1110 1 11 1223456789999999999877752 358999999999
Q ss_pred cCCCCC-ccCcceeeeeeeEeecCC
Q psy8087 229 AENSRT-RRHLAEYTHVEAECAFLT 252 (658)
Q Consensus 229 ~E~~~~-~rHl~EFt~lE~e~a~~d 252 (658)
+|.... .+|+.||+|+++++...+
T Consensus 87 ~e~~~~~~~~~~ef~~l~~~~~g~~ 111 (211)
T cd00768 87 NEGGRRGLRRVREFTQLEGEVFGED 111 (211)
T ss_pred cCCCccccccceeEEEcCEEEEcCC
Confidence 997522 168899999999999864
|
Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ. |
| >cd04317 EcAspRS_like_N EcAspRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli aspartyl-tRNA synthetase (AspRS), the human mitochondrial (mt) AspRS-2, the discriminating (D) Thermus thermophilus AspRS-1, and the nondiscriminating (ND) Helicobacter pylori AspRS | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.1e-12 Score=120.70 Aligned_cols=66 Identities=24% Similarity=0.298 Sum_probs=55.9
Q ss_pred cCCcEEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccchhh-hhhcCCCccEEEEEEEeEeCC
Q psy8087 68 YIITNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILCQTE-HALLLSTESSVQFRGRIEKVP 134 (658)
Q Consensus 68 ~~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~~~~-~~~~l~~es~V~v~G~l~~~p 134 (658)
..|+.|+|+|||+++|.+|| ++|++|+|++|.+|++++.+....+ ....|+.||+|.|+|.+...|
T Consensus 12 ~~g~~V~i~Gwv~~~R~~gk-~~Fi~LrD~~g~~Q~v~~~~~~~~~~~~~~l~~gs~V~V~G~~~~~~ 78 (135)
T cd04317 12 HVGQEVTLCGWVQRRRDHGG-LIFIDLRDRYGIVQVVFDPEEAPEFELAEKLRNESVIQVTGKVRARP 78 (135)
T ss_pred HCCCEEEEEEeEehhcccCC-EEEEEEecCCeeEEEEEeCCchhHHHHHhCCCCccEEEEEEEEECCC
Confidence 45788999999999999986 9999999999999999986543323 335799999999999998754
|
These homodimeric enzymes are class2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic synthesis, wh |
| >PTZ00213 asparagine synthetase A; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.5e-11 Score=126.82 Aligned_cols=264 Identities=17% Similarity=0.226 Sum_probs=155.5
Q ss_pred CchHHHhh-----hCCcEEEcCCccccccCCCCc-------cc--eeeccC-CcceeeccCHHHHHHHhcc--cC---Cc
Q psy8087 160 GYPPEVSL-----ANGIAKVTPPTLVQTQVEGGS-------TL--FSLNFF-GEPAYLTQSSQLYLETCLP--AL---GD 219 (658)
Q Consensus 160 ~~iR~fl~-----~~gF~EV~TPiL~~~~~eG~~-------~~--F~~~~~-~~~~~L~~Spqlylk~li~--g~---~r 219 (658)
+.|++||. +.+.++|..|+++.... |-. +| |.+..+ +..+-.-+|---||.+++. +| +.
T Consensus 16 ~~iK~~F~~~L~~~LnL~rVsaPLfv~~~~-GlnDnLnG~ErpV~f~~k~~~~~~~evVhSLAKWKR~aL~~y~f~~geG 94 (348)
T PTZ00213 16 LKVKQIFSEALAKELNLIRVEAPLLAEVGD-GTQDNLSGVEKAVQVHVKGIPNSVFEVVHSLAKWKRLTLGEHKFPVGEG 94 (348)
T ss_pred HHHHHHHHHHHHHHhCeeEecCCeEEcCCC-CcccCCCCeeeeeEEecCCCCCceeEEehhhHHHHHHHHHhcCCCCCce
Confidence 34555553 46899999999975433 211 12 444444 5677778888889998886 65 56
Q ss_pred EEEEeeeee-cCCCCCccCcceeeeeeeEeecCCHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCCCcceeeH
Q psy8087 220 VYCIAQSYR-AENSRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGDLVRQMNPNFEPPARPFLRMNY 298 (658)
Q Consensus 220 vfeI~~~FR-~E~~~~~rHl~EFt~lE~e~a~~d~~~~m~~~e~li~~i~~~~~~~~~~~~~~~~~~~~~~~~pf~rit~ 298 (658)
+|.=.++.| +|.. ++.|.-=--|-|||+....-+.-++.+.+.++.++..+..........+ +.+.. ..| ..|+|
T Consensus 95 lytdMnAiR~dE~l-dn~HS~yVDQWDWEkvI~~~~R~~~~Lk~tV~~iy~~ik~te~~~~~~y-p~l~~-~Lp-~~I~F 170 (348)
T PTZ00213 95 IYTDMNALRVEEEL-DNIHSVYVDQWDWEMVIAPADRNLEYLKNTVRRLYAAIRKTEEAICNEY-PNLKR-ILP-KEITF 170 (348)
T ss_pred eeeccccccCCccc-CccceeEeccccHHHhcCccccCHHHHHHHHHHHHHHHHHHHHHHHHHc-hhhhh-cCC-CceEE
Confidence 998666666 5665 4589877778888887665555566666666666666654322111111 11100 001 23444
Q ss_pred HHHHHHHHHcCCCCCCCCCcccCCCCCCchhhhhhcccCCcEEEEe-------------------------------CCC
Q psy8087 299 ADAIEYLRKHEIRKPDNTEYEFGEDIPEMPERKMTDQINRPIMLCR-------------------------------FPA 347 (658)
Q Consensus 299 ~ea~~~l~~~g~~~~~~~~~~~g~~l~~~~e~~l~~~~~~p~fi~~-------------------------------~P~ 347 (658)
..+-+++..+ |++. ...-|..+.+.. .-|||+. ||.
T Consensus 171 itsqeL~~~Y----P~lt--------~keRE~~i~ke~-gaVFi~~IG~~L~~G~~Hd~RApDYDDW~t~~~~~~~~~~~ 237 (348)
T PTZ00213 171 LHTEHLLKMY----PNLS--------PKEREREIVKKY-GAVFLIGIGCKLSSGDTHDLRAPDYDDWSSPVSASKIGFPT 237 (348)
T ss_pred ecHHHHHHHC----CCCC--------HHHHHHHHHHHh-CcEEEEeccCcCCCCCcCCCCCCCccccccccccccccccc
Confidence 4443333222 1100 001111111110 1122221 332
Q ss_pred C---CCCCCCccCCCCcCceeEEEEEeCCcceeeeceeccCCHHHHHHHHHHcC-CCCCCCcchHHHhhcC-CCCcccee
Q psy8087 348 D---IKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREG-IDPAPYYWYTDQRKYG-STPHGGYG 422 (658)
Q Consensus 348 ~---~~pfy~~~~~~~~~~~~~fdL~~~G~~Ei~~G~~r~~d~~~~~~~~~~~g-~~~~~~~~yl~a~~~G-~pP~gG~G 422 (658)
. +.|. ...+.-|..+ -=|+-++.-..||.++++|. |++.+.++++..| .+...+.||++ +..| +|+|+|+|
T Consensus 238 ~~~~~~~~-~~~~gLNGDi-lvw~~~l~~a~ELSSmGiRV-d~esL~~Qlk~~g~~dr~~l~~h~~-ll~g~LP~TiGGG 313 (348)
T PTZ00213 238 ADPTMNSL-MSLQGLNGDI-LVYNPVLDDVLELSSMGIRV-DAEALRRQLEITNNTDRLKCMWHQM-LLNGELPQTIGGG 313 (348)
T ss_pred cccccccc-ccccCccceE-EEechhcCceeecCCcceEE-cHHHHHHHHHHcCCCccccCHHHHH-HHcCCCCCccccc
Confidence 2 1111 0000001111 11333344335999999999 9999999999998 57778899999 7777 99999999
Q ss_pred cchhHHHHHHhcccCcchhhHHH
Q psy8087 423 LGLERVLCWLLNQYHVRDKYQLI 445 (658)
Q Consensus 423 iGidRL~m~l~g~~~Irdvi~f~ 445 (658)
||+|||+|+|+|..+|.||.+=.
T Consensus 314 IGqsRL~M~LL~k~HIgEVQ~sv 336 (348)
T PTZ00213 314 IGQSRLCMFMLRKKHIGEVQCSV 336 (348)
T ss_pred ccHHHHHHHHhCcchhcceeeee
Confidence 99999999999999999997643
|
|
| >PRK05425 asparagine synthetase AsnA; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=2e-11 Score=125.76 Aligned_cols=263 Identities=16% Similarity=0.191 Sum_probs=168.6
Q ss_pred CchHHHhh-----hCCcEEEcCCccccccCCCCc-------cc--eeeccC-CcceeeccCHHHHHHHhcc--cC---Cc
Q psy8087 160 GYPPEVSL-----ANGIAKVTPPTLVQTQVEGGS-------TL--FSLNFF-GEPAYLTQSSQLYLETCLP--AL---GD 219 (658)
Q Consensus 160 ~~iR~fl~-----~~gF~EV~TPiL~~~~~eG~~-------~~--F~~~~~-~~~~~L~~Spqlylk~li~--g~---~r 219 (658)
+.|+++|. +.+.+.|..|+++.... |-. +| |.+..+ +..+-.-+|---|+.+++. +| +.
T Consensus 16 ~~iK~~F~~~L~~~LnL~rvsaPlfv~~~s-GlnD~LnG~E~pV~F~~k~~~~~~~eiVhSLAKWKR~aL~~y~f~~geG 94 (327)
T PRK05425 16 SFVKDFFERQLAKKLNLIRVSAPLFVRVGS-GLNDNLNGVEKPVSFKVKDLPDATFEVVHSLAKWKRLALKRYGFSAGEG 94 (327)
T ss_pred HHHHHHHHHHHHHhhCeeEecCCeEEcCCC-CcccCCCCeecceEeeccCCCCCeeEEEeehHHHHHHHHHhcCCCCCce
Confidence 35555553 46899999999975433 211 12 444444 3577788888899998886 65 56
Q ss_pred EEEEeeeee-cCCCCCccCcceeeeeeeEeecCCHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCCCcceeeH
Q psy8087 220 VYCIAQSYR-AENSRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGDLVRQMNPNFEPPARPFLRMNY 298 (658)
Q Consensus 220 vfeI~~~FR-~E~~~~~rHl~EFt~lE~e~a~~d~~~~m~~~e~li~~i~~~~~~~~~~~~~~~~~~~~~~~~pf~rit~ 298 (658)
+|.=..+.| +|+.| +.|.-=--|-|||.....-+.-++.+.+.++.++..+..........+. .+..+ | ..|+|
T Consensus 95 lytdMnAiR~dE~ld-~~HS~yVDQWDWEkvI~~~~Rn~~~Lk~tV~~Iy~~ik~te~~~~~~y~-~~~~L--p-~~i~F 169 (327)
T PRK05425 95 LYTDMNAIRPDEDLD-NTHSVYVDQWDWEKVIGKEERNLDYLKETVEKIYKAIKATEKAVSKKYP-LLPFL--P-EEITF 169 (327)
T ss_pred eccCCccccCCcccC-cccceEeccccHHHhCCccccCHHHHHHHHHHHHHHHHHHHHHHHHhCc-ccccC--C-CceEE
Confidence 888777666 56764 5898777788888876655555666666666666666544322222221 11111 1 24566
Q ss_pred HHHHHHHHHcCCCCCCCCCcccCCCCCCchhhhhhcccCCcEEEEeCCCCCCCCCCccC----CCCcCceeEEEEEe---
Q psy8087 299 ADAIEYLRKHEIRKPDNTEYEFGEDIPEMPERKMTDQINRPIMLCRFPADIKSFYMSKC----PENPALTESVDVLF--- 371 (658)
Q Consensus 299 ~ea~~~l~~~g~~~~~~~~~~~g~~l~~~~e~~l~~~~~~p~fi~~~P~~~~pfy~~~~----~~~~~~~~~fdL~~--- 371 (658)
..+-++...+ |+. =...=|..+.+. ..-|||+.---.++- -++| |+...+...=||++
T Consensus 170 itsqeL~~~Y----P~l--------~~keRE~~i~ke-~gaVFi~~IG~~L~~--g~~Hd~RapDYDDW~LNGDilvw~~ 234 (327)
T PRK05425 170 ITSQELEDRY----PDL--------TPKEREDAIAKE-YGAVFLIGIGGKLSD--GKPHDGRAPDYDDWGLNGDILVWNP 234 (327)
T ss_pred ecHHHHHHHC----CCC--------CHHHHHHHHHHH-hCcEEEEeccCcCCC--CCcCCCCCCCCcCcccCceEEEEcc
Confidence 5555544332 111 112224444433 235777764332221 1222 23333444555544
Q ss_pred --C-CcceeeeceeccCCHHHHHHHHHHcC-CCCCCCcchHHHhhcC-CCCccceecchhHHHHHHhcccCcchhhHHHH
Q psy8087 372 --P-NVGEVIGGSMRIWDPEELLAGYKREG-IDPAPYYWYTDQRKYG-STPHGGYGLGLERVLCWLLNQYHVRDKYQLIA 446 (658)
Q Consensus 372 --~-G~~Ei~~G~~r~~d~~~~~~~~~~~g-~~~~~~~~yl~a~~~G-~pP~gG~GiGidRL~m~l~g~~~Irdvi~f~~ 446 (658)
. .+ ||.+++.|.+ ++.+.++++..| .++..+.||+++ ..| +|||+|+|||+|||+|+|+|..+|.+|.+=..
T Consensus 235 ~l~~a~-ELSSmGiRVd-~e~L~~Qlk~~g~~dr~~l~~h~~l-l~g~LP~TiGgGIGqsRL~M~LL~k~HIgEVq~svW 311 (327)
T PRK05425 235 VLDDAF-ELSSMGIRVD-EEALKRQLKLTGDEDRLELEWHQAL-LNGELPLTIGGGIGQSRLCMLLLQKAHIGEVQASVW 311 (327)
T ss_pred ccCcee-eecCcceEec-HHHHHHHHHHcCCCccccCHHHHHH-HhCCCCCcccccccHHHHHHHHhccchhcccccccC
Confidence 2 67 9999999999 999999999998 577788999999 777 89999999999999999999999999986543
|
|
| >PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.7e-11 Score=124.33 Aligned_cols=108 Identities=19% Similarity=0.272 Sum_probs=74.6
Q ss_pred CchHHHhhhCCcEEEcCCccccc--------cC-CC-Ccc---ceee-c-cC--Ccceeecc--CHHHHHHHhcc-c-CC
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQT--------QV-EG-GST---LFSL-N-FF--GEPAYLTQ--SSQLYLETCLP-A-LG 218 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~--------~~-eG-~~~---~F~~-~-~~--~~~~~L~~--Spqlylk~li~-g-~~ 218 (658)
..||++|...||.||.+|.+... .+ +. +.+ .|.+ + +- .....||. ||-+..-+... . --
T Consensus 24 ~~i~~~~~~~Gf~e~~~~~v~s~~~nFD~Ln~p~dHpaR~~~Dtfyi~~p~~~~~~~~vLRThts~~~~~~l~~~~~~p~ 103 (247)
T PF01409_consen 24 REIRDIFVGMGFQEVEGPEVESEFYNFDALNIPQDHPARDMQDTFYISNPYSAEEDYSVLRTHTSPGQLRTLNKHRPPPI 103 (247)
T ss_dssp HHHHHHHHCTTSEEESTTSEEEHHHHTGGGTSTTTSCGGCGTTSEBSCSSSBCECSSEEE-SSTHHHHHHHHTTTSHSSE
T ss_pred HHHHHHHHHCCCeEeeCCeEEeeHHHHHhhCcCCCccccccccceeeeccccccchhhhhhhhhhHHHHHHHHHhcCCCe
Confidence 58999999999999999999421 01 11 111 1322 1 11 45667775 45443333111 2 47
Q ss_pred cEEEEeeeeecCCCCCccCcceeeeeeeEeecC--CHHHHHHHHHHHHHHHH
Q psy8087 219 DVYCIAQSYRAENSRTRRHLAEYTHVEAECAFL--TFDDLLDKLEDLICDTV 268 (658)
Q Consensus 219 rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~a~~--d~~~~m~~~e~li~~i~ 268 (658)
|+|+||+|||+|..|. +|+|||.|+|.-.... ++.++..+++.|+++++
T Consensus 104 kif~iG~VyR~D~~D~-th~~~f~Qleg~~~~~~~~f~~Lk~~l~~l~~~lf 154 (247)
T PF01409_consen 104 KIFEIGKVYRRDEIDA-THLPEFHQLEGLVVDKNVTFEDLKGTLEELLKELF 154 (247)
T ss_dssp EEEEEEEEESSSCSBS-SBESEEEEEEEEEEETTE-HHHHHHHHHHHHHHHH
T ss_pred EEEecCceEecCCccc-ccCccceeEeeEEEecccchhHHHHHHHHHHHHHh
Confidence 8999999999999876 9999999999988876 68898888888887765
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Phenylalanyl-tRNA synthetase (6.1.1.20 from EC) is an alpha2/beta2 tetramer composed of 2 subunits that belongs to class IIc. In eubacteria, a small subunit (pheS gene) can be designated as beta (E. coli) or alpha subunit (nomenclature adopted in InterPro). Reciprocally the large subunit (pheT gene) can be designated as alpha (E. coli) or beta (see IPR004531 from INTERPRO and IPR004532 from INTERPRO). In all other kingdoms the two subunits have equivalent length in eukaryota, and can be identified by specific signatures. The enzyme from Thermus thermophilus has an alpha 2 beta 2 type quaternary structure and is one of the most complicated members of the synthetase family. Identification of phenylalanyl-tRNA synthetase as a member of class II aaRSs was based only on sequence alignment of the small alpha-subunit with other synthetases [].; GO: 0000049 tRNA binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3TUP_A 3HFV_A 3CMQ_A 3TEG_A 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B .... |
| >cd04322 LysRS_N LysRS_N: N-terminal, anticodon recognition domain of lysyl-tRNA synthetases (LysRS) | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.4e-11 Score=109.19 Aligned_cols=71 Identities=18% Similarity=0.135 Sum_probs=58.5
Q ss_pred EEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccc--hhhh-hhc-CCCccEEEEEEEeEeCCCCccceEec
Q psy8087 72 NINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILC--QTEH-ALL-LSTESSVQFRGRIEKVPEENMKVQLI 143 (658)
Q Consensus 72 ~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~--~~~~-~~~-l~~es~V~v~G~l~~~p~~~~d~~l~ 143 (658)
+|+|+|||+++|.+|| ++|++|+|+++.+|+|++.+.. ..|. ... |+.||+|.|+|.+..++.+.+|+.++
T Consensus 1 ~v~v~GwV~~~R~~g~-~~Fi~lrd~~~~lQ~v~~~~~~~~~~~~~~~~~l~~g~~V~v~G~v~~~~~g~~El~~~ 75 (108)
T cd04322 1 EVSVAGRIMSKRGSGK-LSFADLQDESGKIQVYVNKDDLGEEEFEDFKKLLDLGDIIGVTGTPFKTKTGELSIFVK 75 (108)
T ss_pred CEEEEEEEEEEecCCC-eEEEEEEECCeEEEEEEECCCCCHHHHHHHHhcCCCCCEEEEEEEEEecCCCCEEEEeC
Confidence 4899999999999986 9999999999999999986542 2232 234 99999999999999999887666554
|
These enzymes are homodimeric class 2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Included in this group are E. coli LysS and LysU. These two isoforms of LysRS are encoded by distinct genes which are differently regulated. Eukaryotes contain 2 sets of aaRSs, both of which encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein |
| >PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.1e-10 Score=121.39 Aligned_cols=108 Identities=14% Similarity=0.148 Sum_probs=74.8
Q ss_pred CchHHHhhhCCcEEEcCCccccc--------cCCC--CccceeeccCCcceeec--cCHHHHHHHhcccC-CcEEEEeee
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQT--------QVEG--GSTLFSLNFFGEPAYLT--QSSQLYLETCLPAL-GDVYCIAQS 226 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~--------~~eG--~~~~F~~~~~~~~~~L~--~Spqlylk~li~g~-~rvfeI~~~ 226 (658)
..||++|...||.|+++|.|... .+.+ |.+.-.+-|.....-|| .||-+-.-+.-... -|+|++|+|
T Consensus 115 ~~Ir~if~~mGF~ev~gpeIes~~~NFdaLn~P~dHPaR~~~DTfyI~~~~lLRThTSp~qir~L~~~~~Pirif~~G~V 194 (339)
T PRK00488 115 EEIEDIFVGMGFEVAEGPEIETDYYNFEALNIPKDHPARDMQDTFYIDDGLLLRTHTSPVQIRTMEKQKPPIRIIAPGRV 194 (339)
T ss_pred HHHHHHHHhCCCEEEeCCccccHHHHHHHhCCCCCCcccccCceEEEcCCceeeccCcHHHHHHHHhcCCCeEEEEeeeE
Confidence 58999999999999999999531 1111 11111112234445555 56665333322222 489999999
Q ss_pred eecCCCCCccCcceeeeeeeEeecC--CHHHHHHHHHHHHHHHH
Q psy8087 227 YRAENSRTRRHLAEYTHVEAECAFL--TFDDLLDKLEDLICDTV 268 (658)
Q Consensus 227 FR~E~~~~~rHl~EFt~lE~e~a~~--d~~~~m~~~e~li~~i~ 268 (658)
||++..|. +|.|+|.|+|.-.... ++.++...++.+++.++
T Consensus 195 yR~D~~Da-tH~~~FhQleglvvd~~vtf~dLK~~L~~fl~~~f 237 (339)
T PRK00488 195 YRNDSDDA-THSPMFHQVEGLVVDKNISFADLKGTLEDFLKAFF 237 (339)
T ss_pred EEcCCCCc-ccCcceeeEEEEEEeCCCCHHHHHHHHHHHHHHHc
Confidence 99998765 9999999999877664 78999888888888775
|
|
| >TIGR00669 asnA aspartate--ammonia ligase, AsnA-type | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.3e-10 Score=115.69 Aligned_cols=263 Identities=16% Similarity=0.189 Sum_probs=162.9
Q ss_pred CchHHHhh-----hCCcEEEcCCccccccCCCC-------ccc--eeeccC-CcceeeccCHHHHHHHhcc--cC---Cc
Q psy8087 160 GYPPEVSL-----ANGIAKVTPPTLVQTQVEGG-------STL--FSLNFF-GEPAYLTQSSQLYLETCLP--AL---GD 219 (658)
Q Consensus 160 ~~iR~fl~-----~~gF~EV~TPiL~~~~~eG~-------~~~--F~~~~~-~~~~~L~~Spqlylk~li~--g~---~r 219 (658)
+.|++||. +.+.++|..|+++.... |- -+| |.+... +..+-.-+|---||.+++. || +.
T Consensus 13 ~~iK~~F~~~L~~~L~L~rVsAPLfv~~~s-GlnD~LnG~ErpV~f~~k~~~~~~~evVhSLAKWKR~aL~~y~f~~geG 91 (330)
T TIGR00669 13 SFVKSTFTQQLEERLGLIEVQGPILSQVGD-GTQDNLSGREKAVQVKVKAIPDAQFEVVHSLAKWKRHTLARHDFSAGEG 91 (330)
T ss_pred HHHHHHHHHHHHHHhCeEEeccceEEcCCC-CCcCCCCCeecceEeecCCCCCceeEEehhhHHHHHHHHHhcCCCCCce
Confidence 34555553 46899999999975433 21 123 445443 5777888898999998886 66 56
Q ss_pred EEEEeeeeec-CCCCCccCcceeeeeeeEeecCCHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCCCcceeeH
Q psy8087 220 VYCIAQSYRA-ENSRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGDLVRQMNPNFEPPARPFLRMNY 298 (658)
Q Consensus 220 vfeI~~~FR~-E~~~~~rHl~EFt~lE~e~a~~d~~~~m~~~e~li~~i~~~~~~~~~~~~~~~~~~~~~~~~pf~rit~ 298 (658)
+|.=..+-|. |+.-++.|.-=--|-|||.....-+.-++.+.+.++.++..+..........+...- . .| ..|+|
T Consensus 92 lytdMnAiR~De~~ldn~HS~yVDQWDWEkvI~~~~R~~~~Lk~tV~~Iy~~ik~te~~~~~~y~l~~-~--Lp-~~I~F 167 (330)
T TIGR00669 92 LFVHMKALRPDEDRLDPLHSVYVDQWDWEKVMPDGERNFAYLKSTVEAIYAAIRATEAAVSERFGLAP-F--LP-DQIHF 167 (330)
T ss_pred eeeccccccCCccccCccceeeeccccHHHhcCcccccHHHHHHHHHHHHHHHHHHHHHHHHhcCccc-c--CC-CceEE
Confidence 9987777775 662245898666777777776655555666666666666666544322222221110 0 11 24666
Q ss_pred HHHHHHHHHcCCCCCCCCCcccCCCCCCchhhhhhcccCCcEEEEeCCCCCCCCCCccC----CCCcCce---------e
Q psy8087 299 ADAIEYLRKHEIRKPDNTEYEFGEDIPEMPERKMTDQINRPIMLCRFPADIKSFYMSKC----PENPALT---------E 365 (658)
Q Consensus 299 ~ea~~~l~~~g~~~~~~~~~~~g~~l~~~~e~~l~~~~~~p~fi~~~P~~~~pfy~~~~----~~~~~~~---------~ 365 (658)
..+-+++..+ |++. ...=|..+.+. ..-|||+.---.++- -++| |+...+. .
T Consensus 168 itsqeL~~~Y----P~lt--------~keRE~~i~ke-~gaVFi~~IG~~L~~--G~~Hd~RApDYDDW~t~~~~~~~gL 232 (330)
T TIGR00669 168 VHSEELVSRY----PDLD--------SKGRERAICKE-LGAVFLIGIGGKLSD--GKPHDVRAPDYDDWTTPSELGYKGL 232 (330)
T ss_pred ecHHHHHHHC----CCCC--------HHHHHHHHHHH-hCcEEEEeccCcCCC--CCcCCCCCCCcccccccccccccCc
Confidence 5555554333 1111 12223334332 234666653322211 1111 1111222 3
Q ss_pred EEEEEe------CCcceeeeceeccCCHHHHHHHHHHcC-CCCCCCcchHHHhhcC-CCCccceecchhHHHHHHhcccC
Q psy8087 366 SVDVLF------PNVGEVIGGSMRIWDPEELLAGYKREG-IDPAPYYWYTDQRKYG-STPHGGYGLGLERVLCWLLNQYH 437 (658)
Q Consensus 366 ~fdL~~------~G~~Ei~~G~~r~~d~~~~~~~~~~~g-~~~~~~~~yl~a~~~G-~pP~gG~GiGidRL~m~l~g~~~ 437 (658)
.=|+++ ..+ ||.+.+.|. |++.+.++++..| .++..+.||+++ ..| +|||+|+|||+|||+|+|+|..+
T Consensus 233 NGDilvw~~vl~~a~-ElSSMGIRV-d~~~L~~Qlk~~g~~dr~~l~~h~el-l~g~LP~TiGGGIGqsRL~MfLL~k~H 309 (330)
T TIGR00669 233 NGDILVWNPVLGDAF-ELSSMGIRV-DEDALRHQLALTGDEDRLELEWHQDL-LNGELPQTIGGGIGQSRLAMLLLQLKH 309 (330)
T ss_pred CceEEEEchhcCcee-eeecceeEE-CHHHHHHHHHHcCCCccccCHHHHHH-HcCCCCccccccccHHHHHHHHhcccc
Confidence 445543 367 999999996 5677888888888 577889999999 777 99999999999999999999999
Q ss_pred cchhhHHH
Q psy8087 438 VRDKYQLI 445 (658)
Q Consensus 438 Irdvi~f~ 445 (658)
|.+|.+=.
T Consensus 310 IgEVQ~sv 317 (330)
T TIGR00669 310 IGEVQASV 317 (330)
T ss_pred ccceeeee
Confidence 99997644
|
The fact that the protein from the H. influenzae is more than 70 % identical to that from the spirochete Treponema pallidum, but less than 65 % identical to that from the closely related E. coli, strongly suggests lateral transfer. |
| >cd04321 ScAspRS_mt_like_N ScAspRS_mt_like_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae mitochondrial (mt) aspartyl-tRNA synthetase (AspRS) | Back alignment and domain information |
|---|
Probab=99.20 E-value=6.9e-11 Score=101.81 Aligned_cols=71 Identities=23% Similarity=0.252 Sum_probs=57.2
Q ss_pred EEEEeEEeecceecCCCeEEEEEEcCCe-EEEEEEecccchhhh-hhcCCCccEEEEEEEeEeCCC------CccceEec
Q psy8087 72 NINIPAIPGPPAIPGKGLMFVTLRDGSG-FIQCVLADILCQTEH-ALLLSTESSVQFRGRIEKVPE------ENMKVQLI 143 (658)
Q Consensus 72 ~v~~~Grv~~~r~~gk~l~Fi~LrD~~~-~iQvv~~~~~~~~~~-~~~l~~es~V~v~G~l~~~p~------~~~d~~l~ 143 (658)
.|+|+|||+++|+.+|+++|++|||++| .+||+++++. ..|. ...++.||+|.|+|.+..+|. +.+|+.++
T Consensus 1 ~V~v~Gwv~~~R~~~~~~~Fi~LrD~~g~~iQvv~~~~~-~~~~~~~~l~~~s~V~V~G~v~~~~~~~~~~~~~~Ei~~~ 79 (86)
T cd04321 1 KVTLNGWIDRKPRIVKKLSFADLRDPNGDIIQLVSTAKK-DAFSLLKSITAESPVQVRGKLQLKEAKSSEKNDEWELVVD 79 (86)
T ss_pred CEEEEEeEeeEeCCCCceEEEEEECCCCCEEEEEECCCH-HHHHHHhcCCCCcEEEEEEEEEeCCCcCCCCCCCEEEEEE
Confidence 3899999999998666799999999999 6999997653 2343 347999999999999998875 44666554
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this fungal group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. Mutations in the gene for |
| >cd04320 AspRS_cyto_N AspRS_cyto_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae and human cytoplasmic aspartyl-tRNA synthetase (AspRS) | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.5e-10 Score=102.94 Aligned_cols=72 Identities=29% Similarity=0.307 Sum_probs=58.2
Q ss_pred EEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEeccc---chh-h-hhhcCCCccEEEEEEEeEeCCC-------Cccc
Q psy8087 72 NINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADIL---CQT-E-HALLLSTESSVQFRGRIEKVPE-------ENMK 139 (658)
Q Consensus 72 ~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~---~~~-~-~~~~l~~es~V~v~G~l~~~p~-------~~~d 139 (658)
+|+|+|||+++|.+||+++|++|||++|.+||+++.+. .+. + ....|+.||+|.|+|.+..++. +.+|
T Consensus 1 ~V~i~Gwv~~~R~~g~k~~Fi~LrD~sg~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~~~~~~E 80 (102)
T cd04320 1 EVLIRARVHTSRAQGAKLAFLVLRQQGYTIQGVLAASAEGVSKQMVKWAGSLSKESIVDVEGTVKKPEEPIKSCTQQDVE 80 (102)
T ss_pred CEEEEEEEEEeecCCCceEEEEEecCCceEEEEEeCCcccCCHHHHHHHhcCCCccEEEEEEEEECCCCcccCCCcCcEE
Confidence 48999999999999977999999999999999998653 122 2 2357999999999999998755 3466
Q ss_pred eEec
Q psy8087 140 VQLI 143 (658)
Q Consensus 140 ~~l~ 143 (658)
+.++
T Consensus 81 l~~~ 84 (102)
T cd04320 81 LHIE 84 (102)
T ss_pred EEEE
Confidence 6654
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. |
| >cd04316 ND_PkAspRS_like_N ND_PkAspRS_like_N: N-terminal, anticodon recognition domain of the type found in the homodimeric non-discriminating (ND) Pyrococcus kodakaraensis aspartyl-tRNA synthetase (AspRS) | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.8e-10 Score=102.34 Aligned_cols=75 Identities=19% Similarity=0.200 Sum_probs=60.9
Q ss_pred cCCcEEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccc--hhh-hhhcCCCccEEEEEEEeEeCCCCc--cceEe
Q psy8087 68 YIITNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILC--QTE-HALLLSTESSVQFRGRIEKVPEEN--MKVQL 142 (658)
Q Consensus 68 ~~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~--~~~-~~~~l~~es~V~v~G~l~~~p~~~--~d~~l 142 (658)
..|++|+|+|||+++|.+|+ ++|++|||++|.+|++++++.. ..+ ....|+.||+|.|+|.+...|... +|+.+
T Consensus 10 ~~g~~V~v~Gwv~~~R~~g~-~~Fi~LrD~~g~iQ~v~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~Ei~~ 88 (108)
T cd04316 10 LDGEEVTVAGWVHEIRDLGG-IKFVILRDREGIVQVTAPKKKVDKELFKTVRKLSRESVISVTGTVKAEPKAPNGVEIIP 88 (108)
T ss_pred hCCCEEEEEEEEEeeeccCC-eEEEEEecCCeeEEEEEeCCCCCHHHHHHHhCCCCcCEEEEEEEEEeCCCCCCCEEEEE
Confidence 46789999999999999886 9999999999999999986532 123 335799999999999999887642 56555
Q ss_pred c
Q psy8087 143 I 143 (658)
Q Consensus 143 ~ 143 (658)
+
T Consensus 89 ~ 89 (108)
T cd04316 89 E 89 (108)
T ss_pred e
Confidence 4
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. P. kodakaraensis AspRS is a class 2b aaRS. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. P. kodakaraensis ND-AspRS can charge both tRNAAsp and tRNAAsn. Some of the enzymes in this group may be discriminating, based on the presence of homologs of asparaginyl-tRNA synthetase (AsnRS) in their completed genomes. |
| >cd04100 Asp_Lys_Asn_RS_N Asp_Lys_Asn_RS_N: N-terminal, anticodon recognition domain of class 2b aminoacyl-tRNA synthetases (aaRSs) | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.7e-10 Score=97.85 Aligned_cols=71 Identities=31% Similarity=0.395 Sum_probs=57.8
Q ss_pred EEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccchh-h-hhhcCCCccEEEEEEEeEeCCC-----CccceEec
Q psy8087 72 NINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILCQT-E-HALLLSTESSVQFRGRIEKVPE-----ENMKVQLI 143 (658)
Q Consensus 72 ~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~~~-~-~~~~l~~es~V~v~G~l~~~p~-----~~~d~~l~ 143 (658)
.|+|+|||+++|..|+ ++|++|||+++.+|++++.+..+. + ....|+.||+|.|+|.+.++|. +.+|+.++
T Consensus 1 ~V~i~Gwv~~~R~~g~-~~Fi~Lrd~~~~iQ~v~~~~~~~~~~~~~~~l~~~s~V~v~G~~~~~~~~~~~~~~~El~~~ 78 (85)
T cd04100 1 EVTLAGWVHSRRDHGG-LIFIDLRDGSGIVQVVVNKEELGEFFEEAEKLRTESVVGVTGTVVKRPEGNLATGEIELQAE 78 (85)
T ss_pred CEEEEEEEehhccCCC-EEEEEEEeCCeeEEEEEECCcChHHHHHHhCCCCCCEEEEEeEEEECCCCCCCCCCEEEEEe
Confidence 3899999999999886 999999999999999998765331 2 2357999999999999998874 33666554
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. Class 2b aaRSs include the homodimeric aspartyl-, asparaginyl-, and lysyl-tRNA synthetases (AspRS, AsnRS, and LysRS). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. Included in this group are archeal and archeal-like A |
| >cd04318 EcAsnRS_like_N EcAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli asparaginyl-tRNA synthetase (AsnRS) and, in Arabidopsis thaliana and Saccharomyces cerevisiae mitochondrial (mt) AsnRS | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.5e-10 Score=97.37 Aligned_cols=72 Identities=26% Similarity=0.363 Sum_probs=57.7
Q ss_pred EEEEeEEeecceecCCCeEEEEEEcCCeE--EEEEEecccchhhhhhcCCCccEEEEEEEeEeCCC--CccceEecC
Q psy8087 72 NINIPAIPGPPAIPGKGLMFVTLRDGSGF--IQCVLADILCQTEHALLLSTESSVQFRGRIEKVPE--ENMKVQLIH 144 (658)
Q Consensus 72 ~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~--iQvv~~~~~~~~~~~~~l~~es~V~v~G~l~~~p~--~~~d~~l~~ 144 (658)
.|+|+|||+++|.+|+ ++|++|||+++. +||+++++.........++.||+|.|+|.+..+|. +.+|+.+++
T Consensus 1 ~v~v~Gwv~~~R~~g~-~~Fi~LrD~s~~~~lQvv~~~~~~~~~~~~~l~~gs~V~v~G~v~~~~~~~~~~El~~~~ 76 (82)
T cd04318 1 EVTVNGWVRSVRDSKK-ISFIELNDGSCLKNLQVVVDKELTNFKEILKLSTGSSIRVEGVLVKSPGAKQPFELQAEK 76 (82)
T ss_pred CEEEEEeEEEEEcCCc-EEEEEEECCCCccCEEEEEeCcccCHHHHhcCCCceEEEEEEEEEeCCCCCCCEEEEEEE
Confidence 3899999999999775 899999999995 99999876432112357999999999999999886 446666643
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial |
| >cd04323 AsnRS_cyto_like_N AsnRS_cyto_like_N: N-terminal, anticodon recognition domain of the type found in human and Saccharomyces cerevisiae cytoplasmic asparaginyl-tRNA synthetase (AsnRS), in Brugia malayai AsnRs and, in various putative bacterial AsnRSs | Back alignment and domain information |
|---|
Probab=99.08 E-value=4.5e-10 Score=96.28 Aligned_cols=64 Identities=34% Similarity=0.531 Sum_probs=53.7
Q ss_pred EEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccchhh-hhhcCCCccEEEEEEEeEeCCCC
Q psy8087 72 NINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILCQTE-HALLLSTESSVQFRGRIEKVPEE 136 (658)
Q Consensus 72 ~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~~~~-~~~~l~~es~V~v~G~l~~~p~~ 136 (658)
.|+|+|||+++|.+| +++|++|||+++.+|++++.+....+ ....|+.||+|.|+|.+.++|.+
T Consensus 1 ~V~v~Gwv~~~R~~g-~~~Fi~LrD~~~~iQ~v~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~ 65 (84)
T cd04323 1 RVKVFGWVHRLRSQK-KLMFLVLRDGTGFLQCVLSKKLVTEFYDAKSLTQESSVEVTGEVKEDPRA 65 (84)
T ss_pred CEEEEEEEEEEecCC-CcEEEEEEcCCeEEEEEEcCCcchhHHHHhcCCCcCEEEEEEEEEECCcc
Confidence 389999999999986 58999999999999999986543223 33579999999999999998765
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic synthesis, whereas the other exclusively with |
| >PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=9.8e-10 Score=121.58 Aligned_cols=46 Identities=24% Similarity=0.440 Sum_probs=36.7
Q ss_pred CcEEEEeeeeecCCCCCccCcceeeeeeeEeecCC--HHHHHHHHHHHH
Q psy8087 218 GDVYCIAQSYRAENSRTRRHLAEYTHVEAECAFLT--FDDLLDKLEDLI 264 (658)
Q Consensus 218 ~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~a~~d--~~~~m~~~e~li 264 (658)
-|+|.||+|||+|..|. +|+|||+|+|......+ ..+++.++.+++
T Consensus 358 ~k~fsigrVfR~d~~Da-tH~~eFhQ~Eg~vi~~~~s~~~L~~~l~~f~ 405 (494)
T PTZ00326 358 KKYFSIDRVFRNETLDA-THLAEFHQVEGFVIDRNLTLGDLIGTIREFF 405 (494)
T ss_pred ceEEecCCEecCCCCCC-CcCceeEEEEEEEEeCCCCHHHHHHHHHHHH
Confidence 48999999999999976 99999999999988764 455555544444
|
|
| >COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.4e-09 Score=112.94 Aligned_cols=107 Identities=17% Similarity=0.214 Sum_probs=68.3
Q ss_pred CchHHHhhhCCcEEEcCCccccccCCC-----------CccceeeccCCcc---eeec--cCHHHHHHHhccc--CCcEE
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQVEG-----------GSTLFSLNFFGEP---AYLT--QSSQLYLETCLPA--LGDVY 221 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~eG-----------~~~~F~~~~~~~~---~~L~--~Spqlylk~li~g--~~rvf 221 (658)
..|+++|.+.||.|++.|.+. ++.-. |.+.--+-|++.+ .-|| .||=.-..+.-.. =-|+|
T Consensus 118 e~i~~iF~~mGF~~~~gp~IE-~d~~NFDaLn~P~dHPARdmqDTFy~~~~~~~~lLRTHTs~vq~R~l~~~~~~P~k~~ 196 (335)
T COG0016 118 EEIEDIFLGMGFTEVEGPEIE-TDFYNFDALNIPQDHPARDMQDTFYLKDDREKLLLRTHTSPVQARTLAENAKIPIKIF 196 (335)
T ss_pred HHHHHHHHHcCceeccCCccc-ccccchhhhcCCCCCCcccccceEEEcCCCCceeecccCcHhhHHHHHhCCCCCceEe
Confidence 489999999999999999763 32211 1111001122221 2333 2332222222111 46899
Q ss_pred EEeeeeecCCCCCccCcceeeeeeeEeecC--CHHHHHHHHHHHHHHHH
Q psy8087 222 CIAQSYRAENSRTRRHLAEYTHVEAECAFL--TFDDLLDKLEDLICDTV 268 (658)
Q Consensus 222 eI~~~FR~E~~~~~rHl~EFt~lE~e~a~~--d~~~~m~~~e~li~~i~ 268 (658)
.+|+|||++..|. +|+|||.|+|--..-. ++.+++-+++++++.++
T Consensus 197 ~~grvyR~D~~Da-THs~~FhQiEGlvvd~~~s~~~Lkg~L~~f~~~~f 244 (335)
T COG0016 197 SPGRVYRNDTVDA-THSPEFHQIEGLVVDKNISFADLKGTLEEFAKKFF 244 (335)
T ss_pred cccceecCCCCCc-ccchheeeeEEEEEeCCccHHHHHHHHHHHHHHhc
Confidence 9999999999877 9999999999543333 68888888888777665
|
|
| >cd04319 PhAsnRS_like_N PhAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Pyrococcus horikoshii AsnRS asparaginyl-tRNA synthetase (AsnRS) | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.1e-09 Score=97.51 Aligned_cols=71 Identities=25% Similarity=0.318 Sum_probs=56.0
Q ss_pred EEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccc-hhh-hhhcCCCccEEEEEEEeEeCCCCc--cceEec
Q psy8087 72 NINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILC-QTE-HALLLSTESSVQFRGRIEKVPEEN--MKVQLI 143 (658)
Q Consensus 72 ~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~-~~~-~~~~l~~es~V~v~G~l~~~p~~~--~d~~l~ 143 (658)
.|+|+|||+++|.+|| ++|++|||++|.+|++++.+.. ..+ ....++.||+|.|+|.+...|... +|+.++
T Consensus 1 ~V~v~Gwv~~~R~~gk-~~Fi~lrD~~g~iQ~v~~~~~~~~~~~~~~~l~~~s~v~V~G~v~~~~~~~~~~Ei~~~ 75 (103)
T cd04319 1 KVTLAGWVYRKREVGK-KAFIVLRDSTGIVQAVFSKDLNEEAYREAKKVGIESSVIVEGAVKADPRAPGGAEVHGE 75 (103)
T ss_pred CEEEEEEEEeEEcCCC-eEEEEEecCCeeEEEEEeCCCCHHHHHHHhCCCCCCEEEEEEEEEECCCCCCCEEEEEE
Confidence 3899999999999886 7999999999999999986521 223 234799999999999999876532 555543
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The archeal enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. |
| >PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.6e-09 Score=117.63 Aligned_cols=48 Identities=31% Similarity=0.474 Sum_probs=39.7
Q ss_pred CcEEEEeeeeecCCCCCccCcceeeeeeeEeecC--CHHHHHHHHHHHHHH
Q psy8087 218 GDVYCIAQSYRAENSRTRRHLAEYTHVEAECAFL--TFDDLLDKLEDLICD 266 (658)
Q Consensus 218 ~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~a~~--d~~~~m~~~e~li~~ 266 (658)
-|+|.||+|||+|..|. +|+|||.|+|--..-. ++.+++.+++++++.
T Consensus 343 ~k~fsigrVfR~d~iDa-tH~~eFhQ~EG~vvd~~~t~~~L~g~l~~f~~~ 392 (492)
T PLN02853 343 KRYFSIDRVFRNEAVDR-THLAEFHQVEGLVCDRGLTLGDLIGVLEDFFSR 392 (492)
T ss_pred cEEEeccceecCCCCCc-ccCccceeEEEEEEeCCCCHHHHHHHHHHHHHH
Confidence 38999999999999987 9999999999766543 688888777776654
|
|
| >PF01336 tRNA_anti-codon: OB-fold nucleic acid binding domain; InterPro: IPR004365 The OB-fold (oligonucleotide/oligosaccharide-binding fold) is found in all three kingdoms and its common architecture presents a binding face that has adapted to bind different ligands | Back alignment and domain information |
|---|
Probab=98.96 E-value=7.9e-09 Score=85.71 Aligned_cols=75 Identities=33% Similarity=0.468 Sum_probs=62.5
Q ss_pred EEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCCCCCCCceEEEEEEEEE
Q psy8087 515 VTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEGKSAPGGHELKVDYWEV 594 (658)
Q Consensus 515 V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~El~~~~i~v 594 (658)
|+|+|||.+++..++++.|++|.|++|.+||++..+ ........|+.|++|.|+|.+...+ .++++|.++++++
T Consensus 1 V~v~G~V~~~~~~~~~~~~~~l~D~tg~i~~~~~~~-~~~~~~~~l~~g~~v~v~G~v~~~~-----~~~~~l~~~~i~~ 74 (75)
T PF01336_consen 1 VTVEGRVTSIRRSGGKIVFFTLEDGTGSIQVVFFNE-EYERFREKLKEGDIVRVRGKVKRYN-----GGELELIVPKIEI 74 (75)
T ss_dssp EEEEEEEEEEEEEETTEEEEEEEETTEEEEEEEETH-HHHHHHHTS-TTSEEEEEEEEEEET-----TSSEEEEEEEEEE
T ss_pred CEEEEEEEEEEcCCCCEEEEEEEECCccEEEEEccH-HhhHHhhcCCCCeEEEEEEEEEEEC-----CccEEEEECEEEE
Confidence 789999999955556899999999999999999872 2235667899999999999998765 3469999999988
Q ss_pred E
Q psy8087 595 V 595 (658)
Q Consensus 595 l 595 (658)
|
T Consensus 75 l 75 (75)
T PF01336_consen 75 L 75 (75)
T ss_dssp E
T ss_pred C
Confidence 6
|
The OB-fold is a five/six-stranded closed beta-barrel formed by 70-80 amino acid residues. The strands are connected by loops of varying length which form the functional appendages of the protein. The majority of OB-fold proteins use the same face for ligand binding or as an active site. Different OB-fold proteins use this 'fold-related binding face' to, variously, bind oligosaccharides, oligonucleotides, proteins, metal ions and catalytic substrates. This entry contains OB-fold domains that bind to nucleic acids []. It includes the anti-codon binding domain of lysyl, aspartyl, and asparaginyl-tRNA synthetases (See IPR004364 from INTERPRO). Aminoacyl-tRNA synthetases catalyse the addition of an amino acid to the appropriate tRNA molecule 6.1.1 from EC. This domain is found in RecG helicase involved in DNA repair. Replication factor A is a heterotrimeric complex, that contains a subunit in this family [, ]. This domain is also found at the C terminus of bacterial DNA polymerase III alpha chain.; GO: 0003676 nucleic acid binding; PDB: 1BBU_A 1KRS_A 1BBW_A 1KRT_A 1EQR_B 1IL2_B 1C0A_A 3KFU_A 1EOV_A 1ASY_A .... |
| >TIGR00468 pheS phenylalanyl-tRNA synthetase, alpha subunit | Back alignment and domain information |
|---|
Probab=98.80 E-value=9e-08 Score=101.08 Aligned_cols=103 Identities=15% Similarity=0.203 Sum_probs=67.9
Q ss_pred CchHHHhhhCCcEEEcCCccccccCC-CCc------------cceeeccCCcceeeccCHHHHHHHhcc-cC---CcEEE
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQVE-GGS------------TLFSLNFFGEPAYLTQSSQLYLETCLP-AL---GDVYC 222 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~e-G~~------------~~F~~~~~~~~~~L~~Spqlylk~li~-g~---~rvfe 222 (658)
..+|++|...||.|+.||.+...... .+- +.|.+ .....||.|-=--+=+.+. .. -|+||
T Consensus 79 ~~ir~~l~~~Gf~Ev~~~~~~s~~~~fd~l~~~~~hpar~~~d~~~l---~d~~vLRtsl~p~ll~~l~~N~~~pirlFE 155 (294)
T TIGR00468 79 DEIRDIFLGLGFTEEKGPEVETDFWNFDALNIPQDHPARDMQDTFYI---KDRLLLRTHTTAVQLRTMEENEKPPIRIFS 155 (294)
T ss_pred HHHHHHHHHCCCEEeeCCceeccHHHHHHhCCCCCCcchhhccceee---cCCcceecccHHHHHHHHHhcCCCCceEEE
Confidence 47999999999999999999643100 000 11222 1234566543332222332 33 48999
Q ss_pred EeeeeecCCCCCccCcceeeeeeeEeecC--CHHHHHHHHHHHHHH
Q psy8087 223 IAQSYRAENSRTRRHLAEYTHVEAECAFL--TFDDLLDKLEDLICD 266 (658)
Q Consensus 223 I~~~FR~E~~~~~rHl~EFt~lE~e~a~~--d~~~~m~~~e~li~~ 266 (658)
||+|||++..+. +|+|||++|+.-+... |+.|+...+|.++..
T Consensus 156 iGrVfr~d~~d~-~~~pef~ql~gl~~~~~~~f~dLKg~le~ll~~ 200 (294)
T TIGR00468 156 PGRVFRNDTVDA-THLPEFHQVEGLVIDKNVSFTNLKGFLEEFLKK 200 (294)
T ss_pred ecceEEcCCCCC-ccCChhhEEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 999999987643 8999999999987643 677777777777643
|
Most phenylalanyl-tRNA synthetases are heterodimeric, with 2 alpha (pheS) and 2 beta (pheT) subunits. This model describes the alpha subunit, which shows some similarity to class II aminoacyl-tRNA ligases. Mitochondrial phenylalanyl-tRNA synthetase is a single polypeptide chain, active as a monomer, and similar to this chain rather than to the beta chain, but excluded from this model. An interesting feature of the alignment of all sequences captured by this model is a deep split between non-spirochete bacterial examples and all other examples; supporting this split is a relative deletion of about 50 residues in the former set between two motifs well conserved throughout the alignment. |
| >PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.7e-07 Score=104.18 Aligned_cols=47 Identities=23% Similarity=0.415 Sum_probs=38.4
Q ss_pred CcEEEEeeeeecCCCCCccCcceeeeeeeEeecC--CHHHHHHHHHHHHH
Q psy8087 218 GDVYCIAQSYRAENSRTRRHLAEYTHVEAECAFL--TFDDLLDKLEDLIC 265 (658)
Q Consensus 218 ~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~a~~--d~~~~m~~~e~li~ 265 (658)
-|+||||+|||+|..+. .|++||+|++..+... ++.+++.++++++.
T Consensus 351 ~rlFeiGrVFR~e~~d~-~~l~Ef~ql~~~i~G~~~~f~elkg~l~~ll~ 399 (489)
T PRK04172 351 QKYFSIGRVFRPDTIDA-THLPEFYQLEGIVMGEDVSFRDLLGILKEFYK 399 (489)
T ss_pred eEEEEecceEcCCCCCc-ccCCchheEEEEEEeCCCCHHHHHHHHHHHHH
Confidence 48999999999998754 7899999999999986 56666666666654
|
|
| >TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.9e-07 Score=100.01 Aligned_cols=49 Identities=20% Similarity=0.278 Sum_probs=42.6
Q ss_pred CcEEEEeeeeecCC-CCCccCcceeeeeeeEeecC--CHHHHHHHHHHHHHHH
Q psy8087 218 GDVYCIAQSYRAEN-SRTRRHLAEYTHVEAECAFL--TFDDLLDKLEDLICDT 267 (658)
Q Consensus 218 ~rvfeI~~~FR~E~-~~~~rHl~EFt~lE~e~a~~--d~~~~m~~~e~li~~i 267 (658)
-|+|++|+|||+|. .|. +|+++|.|+|.=.+.. ++.|++.+++.|++.+
T Consensus 208 iRIFsIGRVfRrD~~~Da-THl~eFhQlEGLVVdedVSf~DLKgvLe~LLr~L 259 (533)
T TIGR00470 208 LKLFSIDRCFRREQREDR-SHLMTYHSASCVVVDEEVSVDDGKAVAEGLLAQF 259 (533)
T ss_pred eEEEeeeeEEecCCCCCC-ccCceeeeEEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 58999999999995 454 9999999999888776 6899999988888765
|
This family of archaeal proteins resembles known phenylalanyl-tRNA synthetase alpha chains. Recently, it was shown to act in a proposed pathway of tRNA(Cys) indirect aminoacylation, resulting in Cys biosynthesis from O-phosphoserine, in certain archaea. It charges tRNA(Cys) with O-phosphoserine. The pscS gene product converts the phosphoserine to Cys. |
| >PLN02788 phenylalanine-tRNA synthetase | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.8e-06 Score=93.89 Aligned_cols=87 Identities=14% Similarity=0.158 Sum_probs=56.3
Q ss_pred CchHHHhhhC---CcEEEc--CCccccccC----------CCCccceeeccCCcceeec--cCHHHHHHHhc-ccCCcEE
Q psy8087 160 GYPPEVSLAN---GIAKVT--PPTLVQTQV----------EGGSTLFSLNFFGEPAYLT--QSSQLYLETCL-PALGDVY 221 (658)
Q Consensus 160 ~~iR~fl~~~---gF~EV~--TPiL~~~~~----------eG~~~~F~~~~~~~~~~L~--~Spqlylk~li-~g~~rvf 221 (658)
..|+++|... ||.+++ .|+-+ .-. ..|.+.--+-|.+...-|| .|+-.- ++| .+-.|++
T Consensus 75 ~~i~~~f~~~~~~gf~~~~~~~~iv~-~~~NFD~L~~P~dHPaR~~~DTfy~~~~~lLRTHTSa~q~--~~l~~~~~~~~ 151 (402)
T PLN02788 75 NAIYDYFDENYSNKFKKFDDLSPIVS-TKQNFDDVLVPPDHVSRSYNDTYYVDAQTVLRCHTSAHQA--ELLRAGHTHFL 151 (402)
T ss_pred HHHHHHHhhcccCCcEEecCCCCccc-hhhhhhhhCCCCCCCccCccceEEecCCccccCCCcHHHH--HHHHhCCCcEE
Confidence 5899999997 999998 55542 200 0111111122344445554 233221 222 2556999
Q ss_pred EEeeeeecCCCCCccCcceeeeeeeEeec
Q psy8087 222 CIAQSYRAENSRTRRHLAEYTHVEAECAF 250 (658)
Q Consensus 222 eI~~~FR~E~~~~~rHl~EFt~lE~e~a~ 250 (658)
.+|+|||++.+|. +|.|+|.|+|.-+.+
T Consensus 152 ~~g~VyRrD~iD~-tH~p~FhQ~EG~~v~ 179 (402)
T PLN02788 152 VTGDVYRRDSIDA-THYPVFHQMEGVRVF 179 (402)
T ss_pred EEeeEeecCCCCc-ccCccceeEEEEEEe
Confidence 9999999999976 999999999988876
|
|
| >PF01336 tRNA_anti-codon: OB-fold nucleic acid binding domain; InterPro: IPR004365 The OB-fold (oligonucleotide/oligosaccharide-binding fold) is found in all three kingdoms and its common architecture presents a binding face that has adapted to bind different ligands | Back alignment and domain information |
|---|
Probab=98.33 E-value=2.7e-06 Score=70.37 Aligned_cols=69 Identities=20% Similarity=0.337 Sum_probs=55.1
Q ss_pred EEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccchhhhhhcCCCccEEEEEEEeEeCCCCccceEe
Q psy8087 73 INIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEENMKVQL 142 (658)
Q Consensus 73 v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~~~~~~~~l~~es~V~v~G~l~~~p~~~~d~~l 142 (658)
|+|+|||.++++.+++++|+.|.|++|.+|+++..+... .....++.|+.|.|+|.+...+.+.+++.+
T Consensus 1 V~v~G~V~~~~~~~~~~~~~~l~D~tg~i~~~~~~~~~~-~~~~~l~~g~~v~v~G~v~~~~~~~~~l~~ 69 (75)
T PF01336_consen 1 VTVEGRVTSIRRSGGKIVFFTLEDGTGSIQVVFFNEEYE-RFREKLKEGDIVRVRGKVKRYNGGELELIV 69 (75)
T ss_dssp EEEEEEEEEEEEEETTEEEEEEEETTEEEEEEEETHHHH-HHHHTS-TTSEEEEEEEEEEETTSSEEEEE
T ss_pred CEEEEEEEEEEcCCCCEEEEEEEECCccEEEEEccHHhh-HHhhcCCCCeEEEEEEEEEEECCccEEEEE
Confidence 799999999977777899999999999999999873211 123479999999999999998776455444
|
The OB-fold is a five/six-stranded closed beta-barrel formed by 70-80 amino acid residues. The strands are connected by loops of varying length which form the functional appendages of the protein. The majority of OB-fold proteins use the same face for ligand binding or as an active site. Different OB-fold proteins use this 'fold-related binding face' to, variously, bind oligosaccharides, oligonucleotides, proteins, metal ions and catalytic substrates. This entry contains OB-fold domains that bind to nucleic acids []. It includes the anti-codon binding domain of lysyl, aspartyl, and asparaginyl-tRNA synthetases (See IPR004364 from INTERPRO). Aminoacyl-tRNA synthetases catalyse the addition of an amino acid to the appropriate tRNA molecule 6.1.1 from EC. This domain is found in RecG helicase involved in DNA repair. Replication factor A is a heterotrimeric complex, that contains a subunit in this family [, ]. This domain is also found at the C terminus of bacterial DNA polymerase III alpha chain.; GO: 0003676 nucleic acid binding; PDB: 1BBU_A 1KRS_A 1BBW_A 1KRT_A 1EQR_B 1IL2_B 1C0A_A 3KFU_A 1EOV_A 1ASY_A .... |
| >cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.7e-05 Score=80.89 Aligned_cols=92 Identities=15% Similarity=0.174 Sum_probs=63.2
Q ss_pred CchHHHhhhCCcEEEcCCccccccC--C-----CCccceee-ccCCcceeeccCHHHHHHHhcc-------cCCcEEEEe
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV--E-----GGSTLFSL-NFFGEPAYLTQSSQLYLETCLP-------ALGDVYCIA 224 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~--e-----G~~~~F~~-~~~~~~~~L~~Spqlylk~li~-------g~~rvfeI~ 224 (658)
+.+++.|.+.||.||.||+|..... . ...+.|++ +--|..+.||--.-.-.=++++ .--|+|++|
T Consensus 10 ~~l~~~f~~~Gy~~v~tP~le~~~~~~~~~~~~~~~~~~~~~d~~g~~l~LRpd~T~~iaR~~a~~~~~~~~p~k~~y~g 89 (261)
T cd00773 10 DTLREVFERYGYEEIDTPVFEYTELFLRKSGDEVSKEMYRFKDKGGRDLALRPDLTAPVARAVAENLLSLPLPLKLYYIG 89 (261)
T ss_pred HHHHHHHHHcCCEEeeccceeeHHHhcccccccccceEEEEECCCCCEEEeCCCCcHHHHHHHHhcCccCCCCeEEEEEc
Confidence 4789999999999999999965432 1 11235543 3346788888332222222222 124899999
Q ss_pred eeeecCCCCCccCcceeeeeeeEeecCC
Q psy8087 225 QSYRAENSRTRRHLAEYTHVEAECAFLT 252 (658)
Q Consensus 225 ~~FR~E~~~~~rHl~EFt~lE~e~a~~d 252 (658)
+|||+|... ..|.-||+|+++|+-..+
T Consensus 90 ~vfR~e~~~-~g~~re~~Q~g~Eiig~~ 116 (261)
T cd00773 90 PVFRYERPQ-KGRYREFYQVGVEIIGSD 116 (261)
T ss_pred CEEecCCCC-CCCccceEEeceeeeCCC
Confidence 999999875 367889999999987663
|
HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ. HisZ along with HisG catalyze the first reaction in histidine biosynthesis. HisZ is found only in a subset of bacteria and differs from HisRS in lacking a C-terminal anti-codon binding domain. |
| >cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain | Back alignment and domain information |
|---|
Probab=98.27 E-value=5e-06 Score=84.16 Aligned_cols=105 Identities=18% Similarity=0.223 Sum_probs=73.6
Q ss_pred CchHHHhhhCCcEEEcCCccccccCCCCc-------------cceeeccCCcceeeccC--HHHHHHHhcc--cCCcEEE
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQVEGGS-------------TLFSLNFFGEPAYLTQS--SQLYLETCLP--ALGDVYC 222 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~eG~~-------------~~F~~~~~~~~~~L~~S--pqlylk~li~--g~~rvfe 222 (658)
..+|++|...||.||.|+.++....+-.. .++.+...- ..+||.| |.|. +.+.. .--|+||
T Consensus 8 ~~ir~~L~~~Gf~Ev~tys~~~~~~~~~~~~~~~~~~~~~~~~~v~l~NP~-~~~LR~sLlp~LL-~~l~~N~~~~~lFE 85 (218)
T cd00496 8 EEIEDIFVSMGFTEVEGPEVETDFYNFDALNIPQDHPARDMQDTFYINDPA-RLLLRTHTSAVQA-RALAKLKPPIRIFS 85 (218)
T ss_pred HHHHHHHHHCCCEEEeCCcccccchhhhhcCCCCCCcccccCceEEECCCc-eEEEeccCcHHHH-HHHHhcCCCeeEEE
Confidence 47899999999999999999643111100 011111000 2566644 6654 33332 4569999
Q ss_pred EeeeeecCCCCCccCcceeeeeeeEeecC--CHHHHHHHHHHHHHHH
Q psy8087 223 IAQSYRAENSRTRRHLAEYTHVEAECAFL--TFDDLLDKLEDLICDT 267 (658)
Q Consensus 223 I~~~FR~E~~~~~rHl~EFt~lE~e~a~~--d~~~~m~~~e~li~~i 267 (658)
||+|||++..+ ..|+|||+||++.+++. |+.|++..+|.|+..+
T Consensus 86 iG~Vf~~~~~~-~~~~~E~~~l~~~~~g~~~df~dlkg~ve~ll~~l 131 (218)
T cd00496 86 IGRVYRNDEID-ATHLPEFHQIEGLVVDKGLTFADLKGTLEEFAKEL 131 (218)
T ss_pred EcCeEECCCCC-CCcCCccEEEEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 99999998753 37889999999999998 8999999999998643
|
PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer. |
| >TIGR00469 pheS_mito phenylalanyl-tRNA synthetase, mitochondrial | Back alignment and domain information |
|---|
Probab=98.20 E-value=2.3e-05 Score=86.09 Aligned_cols=57 Identities=25% Similarity=0.466 Sum_probs=39.9
Q ss_pred EEEEEeCCcc--eeeeceeccCCHHHHHHHHHHcCCCCCCCcchHHHhhcCCCCccceecchhHHHHHHhcccCcchh
Q psy8087 366 SVDVLFPNVG--EVIGGSMRIWDPEELLAGYKREGIDPAPYYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRDK 441 (658)
Q Consensus 366 ~fdL~~~G~~--Ei~~G~~r~~d~~~~~~~~~~~g~~~~~~~~yl~a~~~G~pP~gG~GiGidRL~m~l~g~~~Irdv 441 (658)
-.|+.++| + ||+|++. -+| +.++..|++++.+- | --||||+|||+|++.|.++||..
T Consensus 280 evdi~~~g-~WiEi~gcG~--v~p----~vl~~~g~~~~~~~--------g----~AfGiGleRlaMl~~gi~DiR~~ 338 (460)
T TIGR00469 280 EIEIWFKD-EWLELCGCGI--IRH----DILLRAGVHPSETI--------G----WAFGLGLDRIAMLLFDIPDIRLF 338 (460)
T ss_pred EEEEEECC-eeEEEeeecc--CcH----HHHHHcCCCccceE--------E----EEEEecHHHHHHHHcCccHHHHH
Confidence 46777777 5 8888875 223 34455677654321 1 15899999999999999999974
|
Unlike all other known phenylalanyl-tRNA synthetases, the mitochondrial form demonstrated from yeast is monomeric. It is similar to but longer than the alpha subunit (PheS) of the alpha 2 beta 2 form found in Bacteria, Archaea, and eukaryotes, and shares the characteristic motifs of class II aminoacyl-tRNA ligases. This alignment models the experimental example from Saccharomyces cerevisiae (designated MSF1) and its orthologs from other eukaryotic species. |
| >PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes | Back alignment and domain information |
|---|
Probab=97.98 E-value=2.8e-05 Score=75.66 Aligned_cols=109 Identities=21% Similarity=0.274 Sum_probs=71.8
Q ss_pred CchHHHhh-hCCcEEEcCCccccccC---CCC-----ccceeeccCC-cceeeccCHHHHHHHhcc----c----C-CcE
Q psy8087 160 GYPPEVSL-ANGIAKVTPPTLVQTQV---EGG-----STLFSLNFFG-EPAYLTQSSQLYLETCLP----A----L-GDV 220 (658)
Q Consensus 160 ~~iR~fl~-~~gF~EV~TPiL~~~~~---eG~-----~~~F~~~~~~-~~~~L~~Spqlylk~li~----g----~-~rv 220 (658)
+.+++.+. +.||.||.||+|.+... -|. ...|.+..-+ .+++|+-+.+...=.++. . + =++
T Consensus 7 ~~~~~~~~~~~G~~ev~~P~l~~~~~~~~sg~~~~~~~~~~~~~~~~~~~~~L~pt~~~~~~~~~~~~~~~~~~~LP~~~ 86 (173)
T PF00587_consen 7 RFIREEFVLKFGFQEVDTPILIPSEVWEKSGHWDNFSDEMFKVKDRGDEEYCLRPTSEPGIYSLFKNEIRSSYRDLPLKL 86 (173)
T ss_dssp HHHHHHHHHHTTEEEEB--SEEEHHHHHHHSHHHHHGGGSEEEEETTTEEEEE-SSSHHHHHHHHHHHEEBHGGGSSEEE
T ss_pred HHHHHHhHHhcCCEEEECCeEEehHHhhhccccccccCCeeeeeecccccEEeccccccceeeeecceeeeccccCCeEE
Confidence 46788899 99999999999975421 121 1234443323 569999877665444432 1 2 279
Q ss_pred EEEeeeeecCCCC--CccCcceeeeeeeEeecCCHHHHHHHHHHHHHHHHH
Q psy8087 221 YCIAQSYRAENSR--TRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVD 269 (658)
Q Consensus 221 feI~~~FR~E~~~--~~rHl~EFt~lE~e~a~~d~~~~m~~~e~li~~i~~ 269 (658)
|++|+|||+|... +-..+-||+|.|++....+ ++..+..++++..+..
T Consensus 87 ~~~g~~fR~E~~~~~gl~R~reF~~~e~~~f~~~-~~~~~~~~~~~~~~~~ 136 (173)
T PF00587_consen 87 YQIGTCFRNEARPTRGLFRLREFTMDEMHIFCTP-EQSEEEFEELLELYKE 136 (173)
T ss_dssp EEEEEEEBSSSSSBSTTTS-SEEEEEEEEEEESS-HHHHHHHHHHHHHHHH
T ss_pred eecccccccccccccccceeeEeeeeceEEEeCC-cccHHHHHHHHHHHHH
Confidence 9999999999422 2345679999999998888 8888877777765543
|
seryl tRNA synthetase structure; InterPro: IPR002314 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain includes the glycine, histidine, proline, threonine and serine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3UH0_A 3UGT_C 3UGQ_A 1B76_B 1GGM_B 1ATI_A 1ADY_C 1ADJ_C 2I4O_A 2I4M_B .... |
| >cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00019 Score=74.52 Aligned_cols=106 Identities=18% Similarity=0.183 Sum_probs=69.7
Q ss_pred CchHHHhhhCCcEEEcCCccccccC---CCC-----ccceeec-cCCcceeeccCHHH-----HHHHhcc--cCC-cEEE
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV---EGG-----STLFSLN-FFGEPAYLTQSSQL-----YLETCLP--ALG-DVYC 222 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~---eG~-----~~~F~~~-~~~~~~~L~~Spql-----ylk~li~--g~~-rvfe 222 (658)
+.+++.|.+.||.||.||+|..... .|. .+.|.+. .-+.+++|+...+- +...+.. -+. |+|+
T Consensus 39 ~~~~~~~~~~G~~ei~~P~l~~~~~~~~sg~~~~~~~emy~~~d~~~~~l~LrPt~e~~~t~~~~~~i~s~~~LPlr~~~ 118 (255)
T cd00779 39 NIIREEMNKIGAQEILMPILQPAELWKESGRWDAYGPELLRLKDRHGKEFLLGPTHEEVITDLVANEIKSYKQLPLNLYQ 118 (255)
T ss_pred HHHHHHHHHcCCEEEECCccCCHHHHHhcCCccccCcccEEEecCCCCeEEEecCCcHHHHHHHHhccccHhhCCHHHHh
Confidence 5778888889999999999964210 122 2356543 33568899876442 2222222 132 8999
Q ss_pred EeeeeecCCCCCc---cCcceeeeeeeEeecCCHHHHHHHHHHHHHH
Q psy8087 223 IAQSYRAENSRTR---RHLAEYTHVEAECAFLTFDDLLDKLEDLICD 266 (658)
Q Consensus 223 I~~~FR~E~~~~~---rHl~EFt~lE~e~a~~d~~~~m~~~e~li~~ 266 (658)
+++|||+|..... | .-||+|.|++....+..+.....++++..
T Consensus 119 ~~~~FR~E~~~~~Gl~R-~reF~q~e~~~~~~~~~~a~~~~~~i~~~ 164 (255)
T cd00779 119 IQTKFRDEIRPRFGLMR-GREFLMKDAYSFDIDEESLEETYEKMYQA 164 (255)
T ss_pred CcceecCCCCCCCceee-eeeEeHhhheeccCCHHHHHHHHHHHHHH
Confidence 9999999932211 2 24999999999888877776666666543
|
ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from prokaryotes and from the mitochondria of eukaryotes. |
| >cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00025 Score=72.08 Aligned_cols=93 Identities=15% Similarity=0.101 Sum_probs=60.9
Q ss_pred CchHHHhhhCCcEEEcCCcccccc---CCCCc-----cceeeccC-----CcceeeccCHHHHHHHhccc-------C-C
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQ---VEGGS-----TLFSLNFF-----GEPAYLTQSSQLYLETCLPA-------L-G 218 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~---~eG~~-----~~F~~~~~-----~~~~~L~~Spqlylk~li~g-------~-~ 218 (658)
..+++.|...||.||.||.|.... ..|.. +.|.+..- |..++||-.-....=++... + -
T Consensus 10 ~~~~~~~~~~G~~ei~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LrP~~~~~i~~~~~~~~~~~~~lP~ 89 (235)
T cd00670 10 RFLDDRMAEYGYQEILFPFLAPTVLFFKGGHLDGYRKEMYTFEDKGRELRDTDLVLRPAACEPIYQIFSGEILSYRALPL 89 (235)
T ss_pred HHHHHHHHHcCCEEEECCeEcCHHHHhhcCCcccchhhcCeeccCcccccCCeEEEecCCCHHHHHHHhccCccchhcCe
Confidence 467888999999999999996543 11211 23433322 46788886555443322221 2 3
Q ss_pred cEEEEeeeeecCCCCC--ccCcceeeeeeeEeecCC
Q psy8087 219 DVYCIAQSYRAENSRT--RRHLAEYTHVEAECAFLT 252 (658)
Q Consensus 219 rvfeI~~~FR~E~~~~--~rHl~EFt~lE~e~a~~d 252 (658)
|+|++|+|||+|.... -.-.-||+|.|++.-..+
T Consensus 90 r~~~~g~~fR~E~~~~~gl~R~reF~q~e~~~~~~~ 125 (235)
T cd00670 90 RLDQIGPCFRHEPSGRRGLMRVREFRQVEYVVFGEP 125 (235)
T ss_pred eeeeecccccCCCCCCCCChhheeeeeceEEEEcCH
Confidence 7999999999998641 112359999999987654
|
This domain is the core catalytic domain of tRNA synthetases of the subgroup containing glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. These enzymes belong to class II aminoacyl-tRNA synthetases (aaRS) based upon their structure and the presence of three characteristic sequence motifs in the core domain. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ and the accessory subunit of mitochondrial polymerase gamma (Pol gamma b) . Most class II tRNA synthetases are dimers, with this subgroup consisting of mostly homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. |
| >cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00054 Score=71.48 Aligned_cols=107 Identities=11% Similarity=0.092 Sum_probs=72.1
Q ss_pred CchHHHhhhCCcEEEcCCccccccC---CC-----C-ccceeeccC-C----cceeeccCHHHHHHHhcc-------cC-
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV---EG-----G-STLFSLNFF-G----EPAYLTQSSQLYLETCLP-------AL- 217 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~---eG-----~-~~~F~~~~~-~----~~~~L~~Spqlylk~li~-------g~- 217 (658)
..+++.+.+.||.||.||.|..... .| . .+.|.+..- + .+++|+-..+--+=.+.. -+
T Consensus 40 ~~i~~~~~~~G~~ev~~P~l~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~~~~l~LrPt~e~~~~~~~~~~i~s~~~LP 119 (264)
T cd00772 40 NVLDKMFKEHGAQNALFPFFILASFLEKEAEHDEGFSKELAVFKDAGDEELEEDFALRPTLEENIGEIAAKFIKSWKDLP 119 (264)
T ss_pred HHHHHHHHHcCCeEEECCeeccHHHHhhcCCcccccCccceEEEeCCCCccCceEEECCCCCHHHHHHHHhhhhhhhccC
Confidence 4788889999999999999965321 11 1 233433222 2 678998776653333222 13
Q ss_pred CcEEEEeeeeecCCCCCcc---CcceeeeeeeEeecCCHHHHHHHHHHHHHHH
Q psy8087 218 GDVYCIAQSYRAENSRTRR---HLAEYTHVEAECAFLTFDDLLDKLEDLICDT 267 (658)
Q Consensus 218 ~rvfeI~~~FR~E~~~~~r---Hl~EFt~lE~e~a~~d~~~~m~~~e~li~~i 267 (658)
=|+|++++|||+|.... + =.-||+|.|.+....+.++..+.++.++...
T Consensus 120 lrl~~~~~~fR~E~r~~-~Gl~R~reF~~~e~~~~~~~~e~a~~e~~~~~~~~ 171 (264)
T cd00772 120 QHLNQIGNKFRDEIRPR-FGFLRAREFIMKDGHSAHADAEEADEEFLNMLSAY 171 (264)
T ss_pred eeEEEEeCeEeCcCCCC-CCcceeeEEEEeeeEEecCCHHHHHHHHHHHHHHH
Confidence 28999999999995321 1 1249999999987788888888777777433
|
ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. |
| >cd00778 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0002 Score=74.60 Aligned_cols=108 Identities=18% Similarity=0.141 Sum_probs=75.1
Q ss_pred CchHHHhhhCCcEEEcCCccccccC---CCC------ccceeeccCC-----cceeeccCHHHHHHHhcc----c---C-
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV---EGG------STLFSLNFFG-----EPAYLTQSSQLYLETCLP----A---L- 217 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~---eG~------~~~F~~~~~~-----~~~~L~~Spqlylk~li~----g---~- 217 (658)
+.+++.+.+.||.||.||.|..... ++| .+.|++..-+ .+++|+-..|-.+=.+.. + +
T Consensus 40 ~~~~~~~~~~G~~ev~~P~l~~~~~~~~~sg~~~~f~~~~f~~~~~~~~~~~~~~~L~Pt~e~~~~~~~~~~i~s~r~LP 119 (261)
T cd00778 40 KILDKEIKETGHENVYFPLLIPESELEKEKEHIEGFAPEVAWVTHGGLEELEEPLALRPTSETAIYPMFSKWIRSYRDLP 119 (261)
T ss_pred HHHHHHHHHcCCEEEECCccccHHHhhhhhcchhhcCcceEEEEecCCcccCCcEEEcCCCCHHHHHHHHhhccchhhcC
Confidence 4789999999999999999975432 122 1345543222 368998775544332222 2 2
Q ss_pred CcEEEEeeeeecCCCCCc--cCcceeeeeeeEeecCCHHHHHHHHHHHHHHH
Q psy8087 218 GDVYCIAQSYRAENSRTR--RHLAEYTHVEAECAFLTFDDLLDKLEDLICDT 267 (658)
Q Consensus 218 ~rvfeI~~~FR~E~~~~~--rHl~EFt~lE~e~a~~d~~~~m~~~e~li~~i 267 (658)
=|+|++++|||+|...+. -=.-||+|.|.|..+.+.+++.+..++++...
T Consensus 120 lr~~~~~~~fR~E~~~~~Gl~R~reF~~~d~h~~~~~~e~~~~~~~~~~~~~ 171 (261)
T cd00778 120 LKINQWVNVFRWETKTTRPFLRTREFLWQEGHTAHATEEEAEEEVLQILDLY 171 (261)
T ss_pred HHHHhhhhhccCCCCCCCceeEeeeeeeeceeeccCCHHHHHHHHHHHHHHH
Confidence 369999999999986420 01349999999999999999988888877543
|
ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from archaea, the cytoplasm of eukaryotes and some bacteria. |
| >COG2502 AsnA Asparagine synthetase A [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0041 Score=62.71 Aligned_cols=265 Identities=17% Similarity=0.179 Sum_probs=145.0
Q ss_pred chHHHh-hhCCcEEEcCCccccccCCCCc-------cc--eeeccC-CcceeeccCHHHHHHHhcc--cC---CcEEEEe
Q psy8087 161 YPPEVS-LANGIAKVTPPTLVQTQVEGGS-------TL--FSLNFF-GEPAYLTQSSQLYLETCLP--AL---GDVYCIA 224 (658)
Q Consensus 161 ~iR~fl-~~~gF~EV~TPiL~~~~~eG~~-------~~--F~~~~~-~~~~~L~~Spqlylk~li~--g~---~rvfeI~ 224 (658)
.+-++| ...|.+||..|+|++... |-. .+ |.+... +..+-.-.|---|+...+. || +..|.=.
T Consensus 18 ~Ft~~l~~~L~lieVq~Pils~vg~-G~qDnLsg~ekaVsv~vk~~p~a~fEvVhSLAKWKR~tL~r~~f~~~eGlythM 96 (330)
T COG2502 18 TFTQHLEERLGLIEVQAPILSRVGD-GLQDNLSGTEKAVSVKVKKLPDATFEVVHSLAKWKRHTLARYGFSAGEGLYTHM 96 (330)
T ss_pred HHHHHHHHhcCeEEeecceEeccCC-cccccccccccceEEEEeecCCchhhhhHHHHHHHHHHHHhcCCcCCCceeeec
Confidence 344444 456999999999975422 211 12 222221 2224445666778876664 55 6699988
Q ss_pred eeeec-CCCCCccCcceeeeeeeEeecCCHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCCCcceeeHHHHHH
Q psy8087 225 QSYRA-ENSRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGDLVRQMNPNFEPPARPFLRMNYADAIE 303 (658)
Q Consensus 225 ~~FR~-E~~~~~rHl~EFt~lE~e~a~~d~~~~m~~~e~li~~i~~~~~~~~~~~~~~~~~~~~~~~~pf~rit~~ea~~ 303 (658)
.+.|. |++-+..|.-=--|-|||....+-+.-+..+.+.+..+...+.......-..++.. .+ .| ..|||..+-+
T Consensus 97 ~AlRpDeD~ld~~HSvYVDQWDWEkvi~~g~rNl~yLK~tV~kIY~~ir~te~av~~~~~~~--~~-LP-~~ItFihsee 172 (330)
T COG2502 97 KALRPDEDRLDPIHSVYVDQWDWEKVIPDGDRNLAYLKSTVEKIYAAIRETELAVSAEFGLA--PF-LP-DQITFIHSQE 172 (330)
T ss_pred hhcCCCcccccchheEEecccchhhhcCCccccHHHHHHHHHHHHHHHHHHHHHHHHhcCCc--cc-Cc-cceEEeehHH
Confidence 98885 55334578755566677766655555555666666666665554332111222211 00 11 3466665555
Q ss_pred HHHHcCCCCCCCCCcccCCCCCCchhhhhhcccCCcEEEEe--------CCCCCC-CCCCccCC-CCcCc-eeEEEEE--
Q psy8087 304 YLRKHEIRKPDNTEYEFGEDIPEMPERKMTDQINRPIMLCR--------FPADIK-SFYMSKCP-ENPAL-TESVDVL-- 370 (658)
Q Consensus 304 ~l~~~g~~~~~~~~~~~g~~l~~~~e~~l~~~~~~p~fi~~--------~P~~~~-pfy~~~~~-~~~~~-~~~fdL~-- 370 (658)
+...+ |++. .+.-|..+.+.++ .+|++. +|...+ |=|.-.+. ...++ ...=|++
T Consensus 173 L~~ry----P~L~--------~k~RE~ai~Ke~g-AvFligIGg~LsdG~~hd~RaPdYDdWtt~se~~~~gLNGDilvw 239 (330)
T COG2502 173 LVARY----PDLD--------PKGRERAIAKELG-AVFLIGIGGKLSDGKPHDVRAPDYDDWTTPSELGYKGLNGDILVW 239 (330)
T ss_pred HHHhC----CCCC--------cchhhHHHHHhhC-cEEEEecccccCCCCcCCCCCCCccccCCcccccccccCCcEEEe
Confidence 54332 2111 1222344443332 345543 233322 21211110 00000 1223333
Q ss_pred ----eCCcceeeeceeccCCHHHHHHHHHHcCC-CCCCCcchHHHhhcCCCCccceecchhHHHHHHhcccCcchhhHHH
Q psy8087 371 ----FPNVGEVIGGSMRIWDPEELLAGYKREGI-DPAPYYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRDKYQLI 445 (658)
Q Consensus 371 ----~~G~~Ei~~G~~r~~d~~~~~~~~~~~g~-~~~~~~~yl~a~~~G~pP~gG~GiGidRL~m~l~g~~~Irdvi~f~ 445 (658)
=.++ |+.+.+.|. |...+++.+.-.|. |...+.|-=..+.--+|-|-|-|||=.||+|+|+...+|-+|..=.
T Consensus 240 n~~l~~af-ElSSMGIRV-de~~l~~Ql~ltgdeDrl~~~wHq~llng~lP~TIGGGIGQSRl~M~lL~k~HIGeVQ~sV 317 (330)
T COG2502 240 NPVLGDAF-ELSSMGIRV-DEDALKRQLALTGDEDRLELEWHQMLLNGELPQTIGGGIGQSRLCMLLLQKKHIGEVQASV 317 (330)
T ss_pred chhccchh-eeecceeEe-cHHHHHHHHhccCchhhhcCHHHHHHHcCCCCccccCcccHHHHHHHHhcccccceeeecc
Confidence 3367 888888886 44556666665543 2234566666666668999999999999999999999999986543
|
|
| >TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0012 Score=76.07 Aligned_cols=111 Identities=22% Similarity=0.268 Sum_probs=73.8
Q ss_pred CchHHHhhhCCcEEEcCCccccccC--C-C-----Cccceee-ccCCcceeeccCHH-----HHHHHhcc--cC-CcEEE
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV--E-G-----GSTLFSL-NFFGEPAYLTQSSQ-----LYLETCLP--AL-GDVYC 222 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~--e-G-----~~~~F~~-~~~~~~~~L~~Spq-----lylk~li~--g~-~rvfe 222 (658)
+.+|+.|.+.||.||.||.|..... + | +.+.|.+ +-.|..++|+-..| ++...+.. .+ -|+|+
T Consensus 55 ~~i~~~~~~~G~~ei~~P~l~~~el~~~sg~~~~~~~emf~~~dr~~~~l~LrPT~Ee~~t~~~~~~i~syr~LPlrlyq 134 (568)
T TIGR00409 55 NIVREEMNKDGAIEVLLPALQPAELWQESGRWDTYGPELLRLKDRKGREFVLGPTHEEVITDLARNEIKSYKQLPLNLYQ 134 (568)
T ss_pred HHHHHHHHHcCCEEEECCccchHHHHhhcCCCCccchhcEEEecCCCCEEEEcCCCcHHHHHHHHHHHhhccccCeEEEE
Confidence 5899999999999999999975321 1 1 2346654 34467889986433 22222222 13 38999
Q ss_pred EeeeeecC-CCCCc--cCcceeeeeeeEeecCCHHHHHHHHHHHH---HHHHHHH
Q psy8087 223 IAQSYRAE-NSRTR--RHLAEYTHVEAECAFLTFDDLLDKLEDLI---CDTVDRV 271 (658)
Q Consensus 223 I~~~FR~E-~~~~~--rHl~EFt~lE~e~a~~d~~~~m~~~e~li---~~i~~~~ 271 (658)
|++|||+| ..+.. | .-||+|.|.|.-..+..+.....+.|+ ..+++.+
T Consensus 135 i~~~fR~E~rpr~Gl~R-~REF~~~d~~~f~~~~~~a~~e~~~~~~~y~~if~~L 188 (568)
T TIGR00409 135 IQTKFRDEIRPRFGLMR-GREFIMKDAYSFHSDEESLDATYQKMYQAYSNIFSRL 188 (568)
T ss_pred eeCEeeCCCCCCCCccc-cccEEEEEEEEEeCChHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999 32221 2 249999999999888766665666554 5555554
|
Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent groups. This group includes enzymes from Escherichia coli, Bacillus subtilis, Aquifex aeolicus, the spirochete Treponema pallidum, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. The other group includes the Pro-specific domain of a human multifunctional tRNA ligase and the prolyl-tRNA synthetases from the Archaea, the Mycoplasmas, and the spirochete Borrelia burgdorferi. |
| >PRK09194 prolyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0012 Score=76.10 Aligned_cols=111 Identities=22% Similarity=0.277 Sum_probs=72.0
Q ss_pred CchHHHhhhCCcEEEcCCccccccC--C-C-----Cccceee-ccCCcceeeccCHHHHHHHhcc----c---C-CcEEE
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV--E-G-----GSTLFSL-NFFGEPAYLTQSSQLYLETCLP----A---L-GDVYC 222 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~--e-G-----~~~~F~~-~~~~~~~~L~~Spqlylk~li~----g---~-~rvfe 222 (658)
+.+|+.|.+.||.||.||+|..... + | +.+.|.+ +-.+.+++|+-..|-..=.++. + + -|+|+
T Consensus 55 ~~i~~~~~~~G~~ei~~P~l~~~~l~~~sg~~~~~~~emf~~~d~~~~~l~LrPt~e~~~~~~~~~~~~s~~~LP~r~yq 134 (565)
T PRK09194 55 NIVREEMNKIGAQEVLMPALQPAELWQESGRWEEYGPELLRLKDRHGRDFVLGPTHEEVITDLVRNEIKSYKQLPLNLYQ 134 (565)
T ss_pred HHHHHHHHHcCCEEEECcccCcHHHHhhcCCccccchhceEEecCCCCEEEECCCChHHHHHHHHhhhhhcccCCeEEEE
Confidence 5889999999999999999963321 1 1 2346655 4446789998644422222221 2 2 38999
Q ss_pred EeeeeecCC-CCCc--cCcceeeeeeeEeecCCHHHHHHHHHHHH---HHHHHHH
Q psy8087 223 IAQSYRAEN-SRTR--RHLAEYTHVEAECAFLTFDDLLDKLEDLI---CDTVDRV 271 (658)
Q Consensus 223 I~~~FR~E~-~~~~--rHl~EFt~lE~e~a~~d~~~~m~~~e~li---~~i~~~~ 271 (658)
|++|||.|. .... | .-||+|.|+|....+-.+.....++++ ..+++.+
T Consensus 135 i~~~fR~E~rp~~Gl~R-~reF~q~d~~~f~~~~~~a~~~~~~~~~~~~~i~~~l 188 (565)
T PRK09194 135 IQTKFRDEIRPRFGLMR-GREFIMKDAYSFHADEESLDETYDAMYQAYSRIFDRL 188 (565)
T ss_pred eeCCccCCCCCCCcccc-cccEEEeeEEEEcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 999999993 2111 2 249999999998876665555455554 4555544
|
|
| >cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0011 Score=70.49 Aligned_cols=104 Identities=15% Similarity=0.151 Sum_probs=65.1
Q ss_pred CchHHHhhhCCcEEEcCCccccccC---CCC-----ccceeeccCCcceeeccCHHHHH-----HHhcc--cC-CcEEEE
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV---EGG-----STLFSLNFFGEPAYLTQSSQLYL-----ETCLP--AL-GDVYCI 223 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~---eG~-----~~~F~~~~~~~~~~L~~Spqlyl-----k~li~--g~-~rvfeI 223 (658)
+.+++.+.+.||.||.||.|..... .|. .+.|.++.-|..++||-..+-.. +.... .+ -|+|++
T Consensus 38 ~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sg~~~~~~~~my~~~~~~~~l~LRP~~~~~~~~~~~~~~~s~~~LPlr~~~~ 117 (298)
T cd00771 38 DFLRELQRKRGYQEVETPIIYNKELWETSGHWDHYRENMFPFEEEDEEYGLKPMNCPGHCLIFKSKPRSYRDLPLRLAEF 117 (298)
T ss_pred HHHHHHHHHcCCEEEECCeecCHHHHhhCCCccccccCceEeccCCceEEEcccCCHHHHHHHHhhccchhhCCeEEEEe
Confidence 4778888999999999999964421 121 23455544456788875444332 22222 13 289999
Q ss_pred eeeeecCCCCC----ccCcceeeeeeeEeecCCHHHHHHHHHHHHH
Q psy8087 224 AQSYRAENSRT----RRHLAEYTHVEAECAFLTFDDLLDKLEDLIC 265 (658)
Q Consensus 224 ~~~FR~E~~~~----~rHl~EFt~lE~e~a~~d~~~~m~~~e~li~ 265 (658)
|+|||+|.... .|- -||+|.|++.-.. .++..+.+++++.
T Consensus 118 g~vfR~E~~~~~~Gl~R~-reF~q~e~~i~~~-~e~~~~e~~e~l~ 161 (298)
T cd00771 118 GTVHRYEQSGALHGLTRV-RGFTQDDAHIFCT-PDQIKEEIKGVLD 161 (298)
T ss_pred cCcccCCCCCCCCCcccc-ccEEECCEEEEeC-CcchHHHHHHHHH
Confidence 99999997632 122 4999999998633 3444444444443
|
ThrRS is a homodimer. It is responsible for the attachment of threonine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. |
| >TIGR00442 hisS histidyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00095 Score=73.64 Aligned_cols=92 Identities=14% Similarity=0.170 Sum_probs=61.7
Q ss_pred CchHHHhhhCCcEEEcCCccccccC----CCC------ccceee-ccCCcceeeccC--HHHHHHHhcc----c-CCcEE
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV----EGG------STLFSL-NFFGEPAYLTQS--SQLYLETCLP----A-LGDVY 221 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~----eG~------~~~F~~-~~~~~~~~L~~S--pqlylk~li~----g-~~rvf 221 (658)
..+++.|.+.||.||.||+|..... .|. .+.|.. +.-|..+.||-- |++....... . --|+|
T Consensus 22 ~~i~~~f~~~Gy~~i~~P~le~~~~~~~~~g~~~~~~~~~~~~~~d~~g~~l~LRpD~T~~iaR~~~~~~~~~~~p~r~~ 101 (397)
T TIGR00442 22 ETIREVFELYGFKEIRTPIFEYTELFARKVGEETDIVEKEMYTFKDKGGRSLTLRPEGTAPVARAVIENKLLLPKPFKLY 101 (397)
T ss_pred HHHHHHHHHcCCeEecCcccchHHHhhhccCccccccccceEEEECCCCCEEeecCCCcHHHHHHHHhcccccCCCeEEE
Confidence 5789999999999999999943321 111 234543 345677888732 3333211111 1 24899
Q ss_pred EEeeeeecCCCCCccCcceeeeeeeEeecCC
Q psy8087 222 CIAQSYRAENSRTRRHLAEYTHVEAECAFLT 252 (658)
Q Consensus 222 eI~~~FR~E~~~~~rHl~EFt~lE~e~a~~d 252 (658)
++|+|||+|.... .|.-||+|+++|.-..+
T Consensus 102 y~g~vfR~e~~~~-gr~ref~Q~g~eiig~~ 131 (397)
T TIGR00442 102 YIGPMFRYERPQK-GRYRQFHQFGVEVIGSD 131 (397)
T ss_pred EEcCeecCCCCCC-CcccceEEcCeeeeCCC
Confidence 9999999998765 45579999999987664
|
This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff. |
| >PRK05431 seryl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0011 Score=73.84 Aligned_cols=106 Identities=20% Similarity=0.361 Sum_probs=73.1
Q ss_pred CchHHHhh-hCCcEEEcCCccccccC-C--CC-----ccceeeccCCcceeeccCHHHHHHHhccc-------C-CcEEE
Q psy8087 160 GYPPEVSL-ANGIAKVTPPTLVQTQV-E--GG-----STLFSLNFFGEPAYLTQSSQLYLETCLPA-------L-GDVYC 222 (658)
Q Consensus 160 ~~iR~fl~-~~gF~EV~TPiL~~~~~-e--G~-----~~~F~~~~~~~~~~L~~Spqlylk~li~g-------~-~rvfe 222 (658)
+.+++.+. +.||.||.||.|..... + |- .+.|++. +.++||+-..|..+=.+..+ + =|+|+
T Consensus 178 ~~~~~~~~~~~G~~ev~~P~lv~~~~~~~~G~~~~f~~~ly~i~--~~~~~L~pTsE~~l~~l~~~~~~s~~dLPlr~~~ 255 (425)
T PRK05431 178 QFMLDLHTEEHGYTEVIPPYLVNEESMYGTGQLPKFEEDLYKIE--DDDLYLIPTAEVPLTNLHRDEILDEEELPLKYTA 255 (425)
T ss_pred HHHHHHHHHhcCCEEEeccccccHHHHhhcCccccchhhceEec--CCCEEEEeCCcHHHHHHHhcccCCHHhCCeeEEE
Confidence 45667777 89999999999975421 1 21 1245543 56889987777666444331 2 37999
Q ss_pred EeeeeecCCCCCc--c----CcceeeeeeeEeecCCHHHHHHHHHHHHHHHH
Q psy8087 223 IAQSYRAENSRTR--R----HLAEYTHVEAECAFLTFDDLLDKLEDLICDTV 268 (658)
Q Consensus 223 I~~~FR~E~~~~~--r----Hl~EFt~lE~e~a~~d~~~~m~~~e~li~~i~ 268 (658)
+++|||+|..... + =.-||+|.|.+ .|.+-++..+..++|+...-
T Consensus 256 ~s~~fR~Eag~~g~~~~GL~Rv~qF~k~E~~-~f~~~e~s~~~~~~~l~~~~ 306 (425)
T PRK05431 256 YSPCFRSEAGSAGRDTRGLIRVHQFDKVELV-KFTKPEDSYAELEELTANAE 306 (425)
T ss_pred EcCEecCCCCcCCCCCCceeeeeeeeeeeEE-EEECHHHHHHHHHHHHHHHH
Confidence 9999999974210 1 12499999999 78877888888888776543
|
|
| >TIGR00414 serS seryl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0015 Score=72.59 Aligned_cols=106 Identities=20% Similarity=0.357 Sum_probs=72.8
Q ss_pred CchHHHhhhCCcEEEcCCccccccC-C--CC-----ccceeeccCCcceeeccCHHHHHHHhccc-------C-CcEEEE
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV-E--GG-----STLFSLNFFGEPAYLTQSSQLYLETCLPA-------L-GDVYCI 223 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~-e--G~-----~~~F~~~~~~~~~~L~~Spqlylk~li~g-------~-~rvfeI 223 (658)
+.+++.+.+.||.||.||.|..... + |- .+.|.++ +.++||+-..|..+-.+... + =|+|++
T Consensus 181 ~~~~~~~~~~G~~~v~~P~lv~~~~~~~~G~~~~f~~~~y~i~--~~~~~L~pTsE~~~~~~~~~~i~s~~~LPlr~~~~ 258 (418)
T TIGR00414 181 NFMLDLLEKNGYQEIYPPYLVNEESLDGTGQLPKFEEDIFKLE--DTDLYLIPTAEVPLTNLHRNEILEEEELPIKYTAH 258 (418)
T ss_pred HHHHHHHHHcCCEEEeCCccccHHHHhhcCccccccccceEec--CCCEEEEeCCcHHHHHHHhCcCCChHhCCeeEEEE
Confidence 4678888889999999999975432 1 11 1234443 46789988777665544331 2 379999
Q ss_pred eeeeecCCCCCc------cCcceeeeeeeEeecCCHHHHHHHHHHHHHHHH
Q psy8087 224 AQSYRAENSRTR------RHLAEYTHVEAECAFLTFDDLLDKLEDLICDTV 268 (658)
Q Consensus 224 ~~~FR~E~~~~~------rHl~EFt~lE~e~a~~d~~~~m~~~e~li~~i~ 268 (658)
++|||+|..... -=.-||+|.|. ..|.+-++..+..++++...-
T Consensus 259 s~~FR~E~g~~G~~t~GL~Rv~qF~k~E~-~~f~~~e~s~~~~~~~~~~~~ 308 (418)
T TIGR00414 259 SPCFRSEAGSYGKDTKGLIRVHQFNKVEL-VKFCKPEESAEELEEMTSDAE 308 (418)
T ss_pred cccccCCCCccCCCCCccccccceeeeeE-EEEcCHHHHHHHHHHHHHHHH
Confidence 999999964211 01249999999 568888888888777776543
|
This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model. |
| >KOG2784|consensus | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.00039 Score=73.12 Aligned_cols=49 Identities=29% Similarity=0.464 Sum_probs=43.5
Q ss_pred cC--CcEEEEeeeeecCCCCCccCcceeeeeeeEeecC--CHHHHHHHHHHHHH
Q psy8087 216 AL--GDVYCIAQSYRAENSRTRRHLAEYTHVEAECAFL--TFDDLLDKLEDLIC 265 (658)
Q Consensus 216 g~--~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~a~~--d~~~~m~~~e~li~ 265 (658)
|| .|+|.|-++||||..|+ +|+.||.|+|--.+-. ++-|+|.++++++.
T Consensus 330 ~f~p~K~FSIDrVFRNEtvDa-THLAEFHQVEGviad~gltLgdLig~l~~ff~ 382 (483)
T KOG2784|consen 330 GFKPAKYFSIDRVFRNETVDA-THLAEFHQVEGVIADKGLTLGDLIGILMEFFT 382 (483)
T ss_pred CCCcccccchhhhhhccccch-HHHHHHhhhceeeecCCCcHHHHHHHHHHHHh
Confidence 65 68999999999999987 9999999999888765 78999998888775
|
|
| >PRK00037 hisS histidyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0014 Score=72.54 Aligned_cols=92 Identities=14% Similarity=0.182 Sum_probs=62.1
Q ss_pred CchHHHhhhCCcEEEcCCccccccC----CC------Cccceee-ccCCcceeeccC--HHHHHHHhcc--cCCcEEEEe
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV----EG------GSTLFSL-NFFGEPAYLTQS--SQLYLETCLP--ALGDVYCIA 224 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~----eG------~~~~F~~-~~~~~~~~L~~S--pqlylk~li~--g~~rvfeI~ 224 (658)
..+|+.|.+.||.||.||+|..... .| ..+.|+. +--|..+.||-- |++..-..-. .--|+|++|
T Consensus 26 ~~i~~~~~~~Gy~ei~tP~le~~~~~~~~~g~~~~~~~~~~~~~~d~~g~~l~LRpd~T~~~ar~~~~~~~~p~r~~~~g 105 (412)
T PRK00037 26 DTIREVFERYGFSEIRTPIFEYTELFKRKVGEETDIVEKEMYTFQDKGGRSLTLRPEGTAPVVRAVIEHKLQPFKLYYIG 105 (412)
T ss_pred HHHHHHHHHcCCeEeeccccchHHHhccccCcccccccceeEEEEcCCCCEEEecCCCcHHHHHHHHhCCCCCeEEEEEc
Confidence 5789999999999999999943211 11 1234543 234677888743 3333221111 235999999
Q ss_pred eeeecCCCCCccCcceeeeeeeEeecCC
Q psy8087 225 QSYRAENSRTRRHLAEYTHVEAECAFLT 252 (658)
Q Consensus 225 ~~FR~E~~~~~rHl~EFt~lE~e~a~~d 252 (658)
++||+|.... .|.-||+|+++|.-..+
T Consensus 106 ~vfR~e~~~~-gr~ref~Q~g~ei~g~~ 132 (412)
T PRK00037 106 PMFRYERPQK-GRYRQFHQFGVEVIGSD 132 (412)
T ss_pred CccccCCCCC-CcccceEEcCeeeeCCC
Confidence 9999998765 56689999999986554
|
|
| >PRK12444 threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0018 Score=75.97 Aligned_cols=107 Identities=15% Similarity=0.162 Sum_probs=71.8
Q ss_pred CchHHHhhhCCcEEEcCCcccccc---CCCCc-----cceeeccCCcceeeccCHHHHHHHhcc-c------C-CcEEEE
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQ---VEGGS-----TLFSLNFFGEPAYLTQSSQLYLETCLP-A------L-GDVYCI 223 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~---~eG~~-----~~F~~~~~~~~~~L~~Spqlylk~li~-g------~-~rvfeI 223 (658)
+.+++.+.+.||.||.||+|.... ..|.. +.|.++--+..++|+-..+-..=++.. . + -|+|++
T Consensus 282 ~~~~~~~~~~G~~~v~tP~l~~~~l~~~sG~~~~~~~emy~~d~~~~~~~LrP~~~~~~~~~~~~~~~sy~~LP~r~~~~ 361 (639)
T PRK12444 282 AFLREIQKEYNYQEVRTPFMMNQELWERSGHWDHYKDNMYFSEVDNKSFALKPMNCPGHMLMFKNKLHSYRELPIRMCEF 361 (639)
T ss_pred HHHHHHHHHcCCEEEECCccCCHHHHhhcCChhhhhhhcCeecCCCcEEEEccCCCHHHHHHHhCcccChhhCCceeEEe
Confidence 478888999999999999996442 12322 233222224567888766655444333 1 1 389999
Q ss_pred eeeeecCCCCC--c--cCcceeeeeeeEeecCCHHHHHHHHHHHHHHHH
Q psy8087 224 AQSYRAENSRT--R--RHLAEYTHVEAECAFLTFDDLLDKLEDLICDTV 268 (658)
Q Consensus 224 ~~~FR~E~~~~--~--rHl~EFt~lE~e~a~~d~~~~m~~~e~li~~i~ 268 (658)
|+|||.|.+.+ . | .-||+|.|++ .|.+-+++....++++..+.
T Consensus 362 g~~fR~E~~~~~~Gl~R-~reF~q~d~~-~f~~~~~~~~e~~~~~~~~~ 408 (639)
T PRK12444 362 GQVHRHEFSGALNGLLR-VRTFCQDDAH-LFVTPDQIEDEIKSVMAQID 408 (639)
T ss_pred ccccCCCCCcCCcCcce-eeeeEEccEE-EECCHHHHHHHHHHHHHHHH
Confidence 99999998632 1 2 2499999999 78887777766666665443
|
|
| >cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.00069 Score=70.25 Aligned_cols=85 Identities=21% Similarity=0.246 Sum_probs=57.6
Q ss_pred CchHHHhhhCC--cEEEcCCccccccCCCCccceeec-----cCCcceeeccCHH----HHHHHhcc-c---C-CcEEEE
Q psy8087 160 GYPPEVSLANG--IAKVTPPTLVQTQVEGGSTLFSLN-----FFGEPAYLTQSSQ----LYLETCLP-A---L-GDVYCI 223 (658)
Q Consensus 160 ~~iR~fl~~~g--F~EV~TPiL~~~~~eG~~~~F~~~-----~~~~~~~L~~Spq----lylk~li~-g---~-~rvfeI 223 (658)
+.+|+.|...| |.||+||+|.+. +.|.+. .-+..+|||--.- ...+++.. . + =|+|||
T Consensus 40 ~~~~~~~~~~g~~~~~i~tP~i~~~------~mf~~~~g~~d~~~~~~~Lrp~~~~~~~~~~~~~~~~~~~~lP~~~~qi 113 (254)
T cd00774 40 SAWRKSFVLEEEDMLEIDSPIITPE------LMFKTSIGPVESGGNLGYLRPETAQGIFVNFKNLLEFNRRKLPFGVAQI 113 (254)
T ss_pred HHHHHHHHhcCCCeEEEeccccCCH------HHheeeecccCCCCcccccCCcccchHHHHHHHHHHHhCCCCCchhhhh
Confidence 57888898885 999999999643 556543 2345788875322 22233332 2 2 379999
Q ss_pred eeeeecCCCCC---ccCcceeeeeeeEeecC
Q psy8087 224 AQSYRAENSRT---RRHLAEYTHVEAECAFL 251 (658)
Q Consensus 224 ~~~FR~E~~~~---~rHl~EFt~lE~e~a~~ 251 (658)
|+|||||.+-. .| .-||||.|+|.-..
T Consensus 114 g~~fR~E~~~~~gl~R-~ReF~q~d~~~f~~ 143 (254)
T cd00774 114 GKSFRNEISPRNGLFR-VREFTQAEIEFFVD 143 (254)
T ss_pred chhhccccCcccceee-eccchhhheeeeEC
Confidence 99999997522 12 35999999998653
|
GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP binding and hydrolysis. This alignment contains only sequences from the GlyRS form which homodimerizes. The heterotetramer glyQ is in a different family of class II aaRS. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the N-terminus of the accessory subunit of mitochondrial polymerase gamma (Pol gamma b). Pol gamma b stimulates processive DNA synthesis and is functional as a homodimer, which can associate with the catalytic subunit Pol gamma alpha to form a heterotrimer. Despite significant both structural and sequence similarity with Gly |
| >PLN02908 threonyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0021 Score=75.88 Aligned_cols=109 Identities=14% Similarity=0.112 Sum_probs=75.0
Q ss_pred CchHHHhhhCCcEEEcCCccccccC---CCC-----ccceeeccCCcceeeccCHHHHHHHhcc----c---C-CcEEEE
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV---EGG-----STLFSLNFFGEPAYLTQSSQLYLETCLP----A---L-GDVYCI 223 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~---eG~-----~~~F~~~~~~~~~~L~~Spqlylk~li~----g---~-~rvfeI 223 (658)
..+|+.+.+.||.||.||.|..... .|. .+.|.++--+.+++|+--.+-.+=.+.. + + =|+|++
T Consensus 329 ~~~~~~~~~~G~~ev~tP~l~~~~l~~~sGh~~~~~~~mf~~~~~~~~~~Lrp~~~~~~~~~~~~~~~s~r~LPlr~~~~ 408 (686)
T PLN02908 329 DFIREQYWERGYDEVITPNIYNMDLWETSGHAAHYKENMFVFEIEKQEFGLKPMNCPGHCLMFAHRVRSYRELPLRLADF 408 (686)
T ss_pred HHHHHHHHHcCCEEEECCccccHHHHhhcCCccccchhccEEecCCeeEEEcCCCcHHHHHHHhccccChhhCCHhHEEe
Confidence 4788899999999999999964421 121 1345544345778887655544433322 1 2 279999
Q ss_pred eeeeecCCCCC---ccCcceeeeeeeEeecCCHHHHHHHHHHHHHHHHH
Q psy8087 224 AQSYRAENSRT---RRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVD 269 (658)
Q Consensus 224 ~~~FR~E~~~~---~rHl~EFt~lE~e~a~~d~~~~m~~~e~li~~i~~ 269 (658)
|+|||+|.+.. -.=.-||||.|++. |.+.+++.+.+++++..+..
T Consensus 409 g~~fR~E~~~~l~Gl~RvReF~q~d~~i-f~~~~q~~~e~~~~l~~~~~ 456 (686)
T PLN02908 409 GVLHRNELSGALTGLTRVRRFQQDDAHI-FCREDQIKDEVKGVLDFLDY 456 (686)
T ss_pred eccccCCCCcCCcCccccccEEEeeEEE-EcCHHHHHHHHHHHHHHHHH
Confidence 99999998732 11134999999998 88888888888888766544
|
|
| >cd04487 RecJ_OBF2_like RecJ_OBF2_like: A subfamily of OB folds corresponding to the second OB fold (OBF2) of archaeal-specific proteins with similarity to eubacterial RecJ | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0079 Score=50.15 Aligned_cols=73 Identities=23% Similarity=0.305 Sum_probs=56.6
Q ss_pred EEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCCCCCCCceEEEEEEEEE
Q psy8087 515 VTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEGKSAPGGHELKVDYWEV 594 (658)
Q Consensus 515 V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~El~~~~i~v 594 (658)
|+|.|=|.+.+..| +=.|+.|+|++..|.|++-.... ......+..||-|.|.|.+.. +.|.+.+.++++++
T Consensus 1 v~v~GeVs~~~~~~-GHvyfsLkD~~a~i~cv~f~~~~-~~~~~~l~~Gd~V~v~G~v~~------~~G~~ql~v~~i~~ 72 (73)
T cd04487 1 VHIEGEVVQIKQTS-GPTIFTLRDETGTVWAAAFEEAG-VRAYPEVEVGDIVRVTGEVEP------RDGQLQIEVESLEV 72 (73)
T ss_pred CEEEEEEeccccCC-CCEEEEEEcCCEEEEEEEEchhc-cCCcCCCCCCCEEEEEEEEec------CCeEEEEEEeeEEE
Confidence 57889998764443 56889999999999999865422 122346899999999999853 37889999999987
Q ss_pred E
Q psy8087 595 V 595 (658)
Q Consensus 595 l 595 (658)
|
T Consensus 73 ~ 73 (73)
T cd04487 73 L 73 (73)
T ss_pred C
Confidence 5
|
RecJ is an ssDNA-specific exonuclease. Although the overall sequence similarity of these proteins to eubacterial RecJ proteins is marginal, they appear to carry motifs, which have been shown to be essential for nuclease function in Escherichia coli RecJ. In addition to this OB fold, most proteins in this subfamily contain: i) an N-terminal OB fold belonging to a different domain family (the ribosomal S1-like RNA-binding family); and ii) a domain, C-terminal to OBF2, characteristic of DHH family proteins. DHH family proteins include E. coli RecJ, and are predicted to have a phosphoesterase function. |
| >PRK03991 threonyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0033 Score=72.95 Aligned_cols=112 Identities=13% Similarity=0.202 Sum_probs=76.4
Q ss_pred CchHHHhhhCCcEEEcCCccccc---cCCC-----CccceeeccCCcceeeccCHHHHH-----HHhcc--cC-CcEEEE
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQT---QVEG-----GSTLFSLNFFGEPAYLTQSSQLYL-----ETCLP--AL-GDVYCI 223 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~---~~eG-----~~~~F~~~~~~~~~~L~~Spqlyl-----k~li~--g~-~rvfeI 223 (658)
..+++.+.+.||.||.||.|... ..-| +.+.|.+.--+.+++|+-..+... ..... -+ -|+||+
T Consensus 235 ~~~~~~~~~~G~~~V~tP~~~~~~~~~~sgh~~~f~e~my~v~~~~e~l~Lrp~~c~~~~~~~~~~~~SyrdLPlr~~e~ 314 (613)
T PRK03991 235 DYVYNLVVELGAMPVETPIMYDLSHPAIREHADKFGERQYRVKSDKKDLMLRFAACFGQFLMLKDMTISYKNLPLKMYEL 314 (613)
T ss_pred HHHHHHHHHCCCEEEECCeecChhHHhhcccccccchhceEecCCCceEEEecCCCHHHHHHHhCCcCchhhCChhhhee
Confidence 47888889999999999988422 1111 123555543356889886666332 23322 13 479999
Q ss_pred ee-eeecCCCCC---ccCcceeeeeeeEeecCCHHHHHHHHHHHHHHHHHHH
Q psy8087 224 AQ-SYRAENSRT---RRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRV 271 (658)
Q Consensus 224 ~~-~FR~E~~~~---~rHl~EFt~lE~e~a~~d~~~~m~~~e~li~~i~~~~ 271 (658)
|+ |||+|.+.. -.=.-||||-|.+.-..+.++.++..++++..+..-+
T Consensus 315 ~~~~fR~E~~g~l~GL~RvReF~~~D~h~f~~~~eqa~~e~~~~l~~~~~i~ 366 (613)
T PRK03991 315 STYSFRLEQRGELVGLKRLRAFTMPDMHTLCKDMEQAMEEFEKQYEMILETG 366 (613)
T ss_pred cchheeCCCCCCCcCcccccceEeeeEEEEECCHHHHHHHHHHHHHHHHHHH
Confidence 99 999997532 1123599999999877778999998888887665533
|
|
| >cd04489 ExoVII_LU_OBF ExoVII_LU_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold domain of Escherichia coli exodeoxyribonuclease VII (ExoVII) large subunit | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.019 Score=47.82 Aligned_cols=74 Identities=27% Similarity=0.408 Sum_probs=56.8
Q ss_pred EEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCCCCCCCceEEEEEEEE
Q psy8087 515 VTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEGKSAPGGHELKVDYWE 593 (658)
Q Consensus 515 V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~El~~~~i~ 593 (658)
++|.|-|.++|...++++|++|.|.++.+.|++-.+... .....|..|+.|.|+|.+..... .+++.|.++++.
T Consensus 2 ~~v~g~v~~i~~tk~g~~~~~L~D~~~~i~~~~f~~~~~-~~~~~l~~g~~v~v~g~v~~~~~----~~~~~l~v~~i~ 75 (78)
T cd04489 2 VWVEGEISNLKRPSSGHLYFTLKDEDASIRCVMWRSNAR-RLGFPLEEGMEVLVRGKVSFYEP----RGGYQLIVEEIE 75 (78)
T ss_pred EEEEEEEecCEECCCcEEEEEEEeCCeEEEEEEEcchhh-hCCCCCCCCCEEEEEEEEEEECC----CCEEEEEEEEEE
Confidence 678999999986444699999999999999999764221 22346899999999999975321 356888888774
|
E. coli ExoVII is composed of two non-identical subunits. E. coli ExoVII is a single-strand-specific exonuclease which degrades ssDNA from both 3-prime and 5-prime ends. ExoVII plays a role in methyl-directed mismatch repair in vivo. ExoVII may also guard the genome from mutagenesis by removing excess ssDNA, since the build up of ssDNA would lead to SOS induction and PolIV-dependent mutagenesis. |
| >cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0028 Score=67.28 Aligned_cols=106 Identities=23% Similarity=0.386 Sum_probs=72.2
Q ss_pred CchHHHhhhCCcEEEcCCccccccC---CC-----CccceeeccCCcceeeccCHHHHHHHhccc-------C-CcEEEE
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV---EG-----GSTLFSLNFFGEPAYLTQSSQLYLETCLPA-------L-GDVYCI 223 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~---eG-----~~~~F~~~~~~~~~~L~~Spqlylk~li~g-------~-~rvfeI 223 (658)
+.+++.+.+.||.||.||.|..... .| +.+.|.++ +.+++|+-..|..+=.+... + =|+|++
T Consensus 60 ~~~~~~~~~~G~~ev~~P~l~~~~l~~~sg~~~~~~~~~f~v~--~~~~~L~pt~e~~~~~l~~~~~~s~~~LPlr~~~~ 137 (297)
T cd00770 60 NFALDFLTKRGFTPVIPPFLVRKEVMEGTGQLPKFDEQLYKVE--GEDLYLIATAEVPLAALHRDEILEEEELPLKYAGY 137 (297)
T ss_pred HHHHHHHHHCCCEEEECcccccHHHHhhcCcCccChhcccEec--CCCEEEeecCCHHHHHHHhcccCCHhhCCchheec
Confidence 5788999999999999999975421 12 12345543 36789987777666544431 2 479999
Q ss_pred eeeeecCCCC------CccCcceeeeeeeEeecCCHHHHHHHHHHHHHHHH
Q psy8087 224 AQSYRAENSR------TRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTV 268 (658)
Q Consensus 224 ~~~FR~E~~~------~~rHl~EFt~lE~e~a~~d~~~~m~~~e~li~~i~ 268 (658)
|+|||+|... +---.-||+|.|.+ .|..-++..+..++++....
T Consensus 138 ~~~fR~E~~~~g~~~~GL~R~reF~~~e~~-~f~~~e~~~~~~~~~l~~~~ 187 (297)
T cd00770 138 SPCFRKEAGSAGRDTRGLFRVHQFEKVEQF-VFTKPEESWEELEELISNAE 187 (297)
T ss_pred ChhHhCccccCCCCCCCceEEEeeeeeeEE-EEECchHHHHHHHHHHHHHH
Confidence 9999999651 11123599999997 56655777766666665443
|
SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. SerRS synthetase is a homodimer. |
| >PRK00413 thrS threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0062 Score=71.44 Aligned_cols=104 Identities=18% Similarity=0.191 Sum_probs=63.8
Q ss_pred CchHHHhhhCCcEEEcCCcccccc---CCCC-----ccceee-ccCCcceeeccCHHHH-----HHHhcc--cC-CcEEE
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQ---VEGG-----STLFSL-NFFGEPAYLTQSSQLY-----LETCLP--AL-GDVYC 222 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~---~eG~-----~~~F~~-~~~~~~~~L~~Spqly-----lk~li~--g~-~rvfe 222 (658)
+.+++.+...||.||.||+|.... ..|. .+.|.+ +--|..+.||--..-. .+.... .+ -|+|+
T Consensus 278 ~~~~~~~~~~Gy~ei~tP~le~~~l~~~~g~~~~~~~~my~~~d~~~~~~~LRP~~~~~~~r~~~~~~~s~~~lP~r~~~ 357 (638)
T PRK00413 278 RYIRRKLRKAGYQEVKTPQILDRELWETSGHWDHYRENMFPTTESDGEEYALKPMNCPGHVQIYKQGLRSYRDLPLRLAE 357 (638)
T ss_pred HHHHHHHHHCCCEEEECCeeCCHHHHHhcCChhhhhhccceeecCCCcEEEEecCCcHHHHHHHhCcCCChhhCCceeee
Confidence 477888899999999999995432 1132 234543 3335778887432222 222211 12 38999
Q ss_pred EeeeeecCCCCCccC----cceeeeeeeEeecCCHHHHHHHHHHHHH
Q psy8087 223 IAQSYRAENSRTRRH----LAEYTHVEAECAFLTFDDLLDKLEDLIC 265 (658)
Q Consensus 223 I~~~FR~E~~~~~rH----l~EFt~lE~e~a~~d~~~~m~~~e~li~ 265 (658)
+|+|||+|.... .| .-||||+|++. |..-+...+.+.+++.
T Consensus 358 ~g~~fR~E~~~~-~~Gl~R~reF~q~~~~~-~g~~~~~~~e~~eii~ 402 (638)
T PRK00413 358 FGTVHRYEPSGA-LHGLMRVRGFTQDDAHI-FCTPEQIEEEVKKVID 402 (638)
T ss_pred ccCeecCCCCCC-CcCcceeeeeEEeeEEE-EcCHHHHHHHHHHHHH
Confidence 999999998742 11 13999999997 6554444433344443
|
|
| >PRK14799 thrS threonyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0067 Score=69.49 Aligned_cols=108 Identities=19% Similarity=0.242 Sum_probs=72.9
Q ss_pred CchHHHhhhCCcEEEcCCccccccC---CCCc-----cceeeccCCcceeeccCHHHHHHHhcc----c---C-CcEEEE
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV---EGGS-----TLFSLNFFGEPAYLTQSSQLYLETCLP----A---L-GDVYCI 223 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~---eG~~-----~~F~~~~~~~~~~L~~Spqlylk~li~----g---~-~rvfeI 223 (658)
..+|+.+.+.||.||.||.|....- .|.- +.|.++--+.+++|+--..-..=++.. + + =|.||+
T Consensus 176 ~~~r~~~~~~Gy~eV~TP~i~~~eL~k~SGh~~~y~~~mf~~~~~~e~~~LrPm~cp~~~~~~~~~~~SyrdLPlR~~e~ 255 (545)
T PRK14799 176 AFMREINDSMGYQEVYTSHVFKTDIWKISGHYTLYRDKLIVFNMEGDEYGVKPMNCPAHILIYKSKPRTYRDLPIRFSEF 255 (545)
T ss_pred HHHHHHHHHcCCeEEECCccchHHHHhhccccccchhhcceeeccCceEEeccCCCHHHHHHHhccccChhhCCHhhEEe
Confidence 4788888999999999999854321 1211 234333335788888655544433332 2 2 279999
Q ss_pred eeeeecCCCCC----ccCcceeeeeeeEeecCCHHHHHHHHHHHHHHHHH
Q psy8087 224 AQSYRAENSRT----RRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVD 269 (658)
Q Consensus 224 ~~~FR~E~~~~----~rHl~EFt~lE~e~a~~d~~~~m~~~e~li~~i~~ 269 (658)
|+|||+|.+.. .| .-||||.|+.. |++.+++.+.+.+++.-+..
T Consensus 256 g~vfR~E~sg~l~GL~R-vReF~Q~DaHi-f~~~~q~~~E~~~~l~~i~~ 303 (545)
T PRK14799 256 GHVYRWEKKGELYGLLR-VRGFVQDDGHI-FLREDQLREEIKMLISKTVE 303 (545)
T ss_pred cceecCCCCCCcccccc-ceeEEEcccEE-EeCHHHHHHHHHHHHHHHHH
Confidence 99999998743 12 34999999998 88887777777666655543
|
|
| >PRK12305 thrS threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0073 Score=69.98 Aligned_cols=110 Identities=19% Similarity=0.214 Sum_probs=69.1
Q ss_pred CchHHHhhhCCcEEEcCCccccccC---CCC-----ccceee-ccCCcceeeccCHHHH-----HHHhcc--cC-CcEEE
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV---EGG-----STLFSL-NFFGEPAYLTQSSQLY-----LETCLP--AL-GDVYC 222 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~---eG~-----~~~F~~-~~~~~~~~L~~Spqly-----lk~li~--g~-~rvfe 222 (658)
+.+++.+...||.||.||+|..... .|. .+.|.+ +--|..++||--..-. .+.+.. .+ =|.|+
T Consensus 214 ~~~~~~~~~~Gy~ev~tP~le~~~l~~~sg~~~~~~~~my~~~d~~~~~~~LRP~~~~~~~~~~~~~~~s~~~lP~r~~~ 293 (575)
T PRK12305 214 DYLRKEHLKRGYEFVYTPHIGKSDLWKTSGHLDNYKENMFPPMEIDEEEYYLKPMNCPGHILIYKSRLRSYRDLPLRLAE 293 (575)
T ss_pred HHHHHHHHHcCCEEEECCccCCHHHHhhcCCcccchhhcccccccCCceEEEecCCCHHHHHHHhcccCChhhCCHhhEE
Confidence 4778888999999999999964421 132 134543 2335778887432222 222212 12 28999
Q ss_pred EeeeeecCCCCCcc---CcceeeeeeeEeecCCHHHHHHHHHHHHHHHHHH
Q psy8087 223 IAQSYRAENSRTRR---HLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDR 270 (658)
Q Consensus 223 I~~~FR~E~~~~~r---Hl~EFt~lE~e~a~~d~~~~m~~~e~li~~i~~~ 270 (658)
+|+|||+|.....+ =.-||+|.|++. |.+.+...+.+.+++..+...
T Consensus 294 ~g~~fR~E~~~~~~Gl~R~reF~q~~~~i-f~~~~~~~~e~~e~i~l~~~~ 343 (575)
T PRK12305 294 FGTVYRYEKSGVLHGLTRVRGFTQDDAHI-FCTPDQIEDEILKVLDFVLEL 343 (575)
T ss_pred ecccccCCCCCCCcCcccccCeEEcceEE-EeCHHHHHHHHHHHHHHHHHH
Confidence 99999999863211 124999999994 777666666666666554443
|
|
| >TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0039 Score=70.37 Aligned_cols=108 Identities=19% Similarity=0.161 Sum_probs=76.5
Q ss_pred CchHHHhhhCCcEEEcCCccccccC---CCC------ccceeeccC-----CcceeeccCHHHHHHHh----ccc---C-
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV---EGG------STLFSLNFF-----GEPAYLTQSSQLYLETC----LPA---L- 217 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~---eG~------~~~F~~~~~-----~~~~~L~~Spqlylk~l----i~g---~- 217 (658)
+.+++-+.+.||.||.||.|..... +|+ .+.|.+..- +.+++|+-..+-.+=.+ +.+ +
T Consensus 46 ~~i~~~~~~~G~~ev~~P~l~~~~~~~~~~~h~~~f~~e~f~v~~~g~~~~~e~l~LrPt~e~~i~~~~~~~i~S~rdLP 125 (472)
T TIGR00408 46 KILRNILDEIGHEEVYFPMLIPESELAKEKDHIKGFEPEVYWITHGGLSKLDEPLALRPTSETAMYPMFKKWVKSYTDLP 125 (472)
T ss_pred HHHHHHHHHcCCEEEECCccCCHHHHHhhcchhhhcchhcEEEecCCCCccCCcEEEeCCCcHHHHHHHhccccChhhcC
Confidence 4788888999999999999964321 232 245655443 36899987766544322 222 2
Q ss_pred CcEEEEeeeeecCCCCCc--cCcceeeeeeeEeecCCHHHHHHHHHHHHHHH
Q psy8087 218 GDVYCIAQSYRAENSRTR--RHLAEYTHVEAECAFLTFDDLLDKLEDLICDT 267 (658)
Q Consensus 218 ~rvfeI~~~FR~E~~~~~--rHl~EFt~lE~e~a~~d~~~~m~~~e~li~~i 267 (658)
-|+|++++|||+|...+. -=.-||+|-|.+..|.+.++..+.++.++...
T Consensus 126 lr~~q~~~vfR~E~~~~~gl~R~rEF~~~e~h~~~~~~e~a~~e~~~~l~~y 177 (472)
T TIGR00408 126 LKINQWVNVFRYETKHTRPFLRTREFTWQEAHTAHATAEEAEEQVLRALDIY 177 (472)
T ss_pred HHHhheeeeecCCCCCCCCcceeeeeehhhhhhhhCCHHHHHHHHHHHHHHH
Confidence 379999999999986420 01359999999999999999888888777543
|
Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent families. This family includes the archaeal enzyme, the Pro-specific domain of a human multifunctional tRNA ligase, and the enzyme from the spirochete Borrelia burgdorferi. The other family includes enzymes from Escherichia coli, Bacillus subtilis, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. |
| >TIGR00418 thrS threonyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.011 Score=68.35 Aligned_cols=103 Identities=15% Similarity=0.155 Sum_probs=65.6
Q ss_pred CchHHHhhhCCcEEEcCCccccccC---CCCc-----cceeec-cCCcceeeccCHHHHHHHhcc-c------C-CcEEE
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV---EGGS-----TLFSLN-FFGEPAYLTQSSQLYLETCLP-A------L-GDVYC 222 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~---eG~~-----~~F~~~-~~~~~~~L~~Spqlylk~li~-g------~-~rvfe 222 (658)
+.+|+.+...||.||.||+|..... .|.. +.|++. --|..++||-..+-..=++.. . + -|+|+
T Consensus 208 ~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~emy~~~d~~~~~~~LrP~~~~~i~~~~~~~~~s~~~lP~rl~~ 287 (563)
T TIGR00418 208 DFVRQKQIKYGYMEVETPIMYDLELWEISGHWDNYKERMFPFTELDNREFMLKPMNCPGHFLIFKSSLRSYRDLPLRIAE 287 (563)
T ss_pred HHHHHHHHHcCCEEEECCccCCHHHHHhcCCcccchhhcceeccCCCceEEEecCCCHHHHHHHhCcCCChHHCCceeeE
Confidence 5778889999999999999964321 1222 234332 235788998665554333332 1 2 38999
Q ss_pred EeeeeecCCCCCc-----cCcceeeeeeeEeecCCHHHHHHHHHHHHH
Q psy8087 223 IAQSYRAENSRTR-----RHLAEYTHVEAECAFLTFDDLLDKLEDLIC 265 (658)
Q Consensus 223 I~~~FR~E~~~~~-----rHl~EFt~lE~e~a~~d~~~~m~~~e~li~ 265 (658)
+|+|||+|.. +. |- -||+|.|+|.-.. .++.....++++.
T Consensus 288 ~g~~fR~E~~-g~~~Gl~R~-reF~q~~~~~~~~-~~~~~~e~~~~i~ 332 (563)
T TIGR00418 288 LGYSHRYEQS-GELHGLMRV-RGFTQDDAHIFCT-EDQIKEEFKNQFR 332 (563)
T ss_pred eccccCCCCC-cCCcCcccc-cceEEeeeEEEcC-HHHHHHHHHHHHH
Confidence 9999999954 31 32 3999999997654 4444444344443
|
This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether.. |
| >PRK08661 prolyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.006 Score=69.03 Aligned_cols=105 Identities=17% Similarity=0.098 Sum_probs=75.1
Q ss_pred CchHHHhhhCCcEEEcCCccccccC---CCC------ccceeeccC-----CcceeeccCHH-----HHHHHhcc--cC-
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV---EGG------STLFSLNFF-----GEPAYLTQSSQ-----LYLETCLP--AL- 217 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~---eG~------~~~F~~~~~-----~~~~~L~~Spq-----lylk~li~--g~- 217 (658)
+.+++.|...||.||.||.|..... +++ .+.|.+..- +.+++|+-..| +|...+.. -+
T Consensus 52 ~~~~~~~~~~G~~ev~~P~l~~~~~~~~~~~h~~~f~~e~~~v~~~~~~~~~e~l~LrPtsE~~i~~~~~~~i~SyrdLP 131 (477)
T PRK08661 52 KILDKLFKETGHENVYFPLLIPESLLEKEKEHVEGFAPEVAWVTHGGGEKLEEKLALRPTSETIIYPMYKKWIQSYRDLP 131 (477)
T ss_pred HHHHHHHHHcCCEEEECCccCCHHHHhhhcCchhhcccccEEEEccCCCccCceEEEecCCcHHHHHHHHhhhcchhhcC
Confidence 4788999999999999999965432 222 234554322 46789987663 33333333 13
Q ss_pred CcEEEEeeeeecCCCCCc--cCcceeeeeeeEeecCCHHHHHHHHHHHHH
Q psy8087 218 GDVYCIAQSYRAENSRTR--RHLAEYTHVEAECAFLTFDDLLDKLEDLIC 265 (658)
Q Consensus 218 ~rvfeI~~~FR~E~~~~~--rHl~EFt~lE~e~a~~d~~~~m~~~e~li~ 265 (658)
=|+|++++|||+|.. ++ -=.-||+|.|.+..+.+.++..+.+++++.
T Consensus 132 lrl~q~~~vfR~E~~-~rgl~R~rEF~~~E~h~~~~~~eea~~e~~~~l~ 180 (477)
T PRK08661 132 LLYNQWVNVVRWETK-TRPFLRTREFLWQEGHTAHATEEEAEEETLEMLE 180 (477)
T ss_pred HHHhcccceeeCCCC-CCCcceeeeEEEcceeeeeCCHHHHHHHHHHHHH
Confidence 379999999999986 42 123599999999999999999888887774
|
|
| >PRK12325 prolyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.02 Score=64.20 Aligned_cols=106 Identities=13% Similarity=0.162 Sum_probs=72.3
Q ss_pred CchHHHhhhCCcEEEcCCcccccc---CCCC-----ccceee-ccCCcceeeccCH-H----HHHHHhcc--cC-CcEEE
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQ---VEGG-----STLFSL-NFFGEPAYLTQSS-Q----LYLETCLP--AL-GDVYC 222 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~---~eG~-----~~~F~~-~~~~~~~~L~~Sp-q----lylk~li~--g~-~rvfe 222 (658)
+.+|+.+.+.||.||.||.|.... ..|. .+.|.+ +--+.+++|+... + ++...... -+ =|+||
T Consensus 55 ~~i~~~~~~~G~~ev~~P~l~~~~l~~~sg~~~~~~~emf~~~d~~~~~~~L~Pt~e~~~~~~~~~~~~syrdLPlrl~q 134 (439)
T PRK12325 55 NIVREEQNRAGAIEILMPTIQPADLWRESGRYDAYGKEMLRIKDRHDREMLYGPTNEEMITDIFRSYVKSYKDLPLNLYH 134 (439)
T ss_pred HHHHHHHHHcCCEEEECCccccHHHHhhcCCccccchhheEEecCCCCEEEEcCCCcHHHHHHHHHHhhhchhhchHheE
Confidence 588999999999999999997431 1121 345654 3346678888532 2 33333322 13 58999
Q ss_pred EeeeeecCCCCCccC----cceeeeeeeEeecCCHHHHHHHHHHHHHHH
Q psy8087 223 IAQSYRAENSRTRRH----LAEYTHVEAECAFLTFDDLLDKLEDLICDT 267 (658)
Q Consensus 223 I~~~FR~E~~~~~rH----l~EFt~lE~e~a~~d~~~~m~~~e~li~~i 267 (658)
++++||+|.. . +| .-||+|-|.|....+.+++.+..++++...
T Consensus 135 ~~~~fR~E~~-~-~~GL~R~reF~~~D~h~f~~~~~~a~~~~~~~~~~~ 181 (439)
T PRK12325 135 IQWKFRDEIR-P-RFGVMRGREFLMKDAYSFDLDEEGARHSYNRMFVAY 181 (439)
T ss_pred ecCEecCCCC-C-CCCccccceEeEeccEEEeCCHHHHHHHHHHHHHHH
Confidence 9999999954 2 33 359999999998888877777666655433
|
|
| >PF13742 tRNA_anti_2: OB-fold nucleic acid binding domain | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.035 Score=49.07 Aligned_cols=77 Identities=25% Similarity=0.347 Sum_probs=61.6
Q ss_pred CcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCccchHHh-ccCCCCcEEEEEEEEEecCCCCCCCCceEEEEE
Q psy8087 512 DKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILCQTEHA-LLLSTESSVQFRGRIEKVPEGKSAPGGHELKVD 590 (658)
Q Consensus 512 g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~~~~~~~-~~L~~gs~V~V~G~v~~~~~~~~~~g~~El~~~ 590 (658)
-..|+|.|=|.+.+.++++-+|++|+|+...|+|++-..... ... ..++.|+-|.|.|.+.--+ +.|.+++.+.
T Consensus 21 ~~~vwV~GEIs~~~~~~~gh~YftLkD~~a~i~~~~~~~~~~-~i~~~~l~~G~~V~v~g~~~~y~----~~G~~sl~v~ 95 (99)
T PF13742_consen 21 LPNVWVEGEISNLKRHSSGHVYFTLKDEEASISCVIFRSRAR-RIRGFDLKDGDKVLVRGRVSFYE----PRGSLSLIVE 95 (99)
T ss_pred cCCEEEEEEEeecEECCCceEEEEEEcCCcEEEEEEEHHHHh-hCCCCCCCCCCEEEEEEEEEEEC----CCcEEEEEEE
Confidence 378999999999998556899999999999999999753211 111 3689999999999996644 2577999998
Q ss_pred EEE
Q psy8087 591 YWE 593 (658)
Q Consensus 591 ~i~ 593 (658)
+++
T Consensus 96 ~i~ 98 (99)
T PF13742_consen 96 DID 98 (99)
T ss_pred EeE
Confidence 875
|
|
| >CHL00201 syh histidine-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.017 Score=64.49 Aligned_cols=91 Identities=9% Similarity=0.162 Sum_probs=61.2
Q ss_pred CchHHHhhhCCcEEEcCCccccccC----CC-C-----ccceee-ccCCcceeecc--CHHHHH---HHhcc--cC-CcE
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV----EG-G-----STLFSL-NFFGEPAYLTQ--SSQLYL---ETCLP--AL-GDV 220 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~----eG-~-----~~~F~~-~~~~~~~~L~~--Spqlyl---k~li~--g~-~rv 220 (658)
..+++.|...||-||+||+|-.... .| . .+.|.. +.-|..+.||- .|.+.. ..... .. -|.
T Consensus 26 ~~i~~~~~~~Gy~~I~TP~~E~~e~~~~~~G~~~~~~~~~my~~~d~~g~~l~LRpd~T~~iaR~~~~~~~~~~~~p~R~ 105 (430)
T CHL00201 26 DKALTLLSLANYSEIRTPIFENSSLYDRGIGETTDIVNKEMYRFTDRSNRDITLRPEGTAGIVRAFIENKMDYHSNLQRL 105 (430)
T ss_pred HHHHHHHHHcCCeeecCcccchHHHHhcccCCcccccccceEEEEcCCCCEEEeCCCCcHHHHHHHHHccccccCCCeEE
Confidence 5788999999999999999954321 12 1 234543 33467788872 222221 21111 12 399
Q ss_pred EEEeeeeecCCCCCccCcceeeeeeeEeecC
Q psy8087 221 YCIAQSYRAENSRTRRHLAEYTHVEAECAFL 251 (658)
Q Consensus 221 feI~~~FR~E~~~~~rHl~EFt~lE~e~a~~ 251 (658)
|++|+|||.|.....|- -||||+++|.-..
T Consensus 106 ~y~g~vfR~e~~q~GR~-Ref~Q~g~EiiG~ 135 (430)
T CHL00201 106 WYSGPMFRYERPQSGRQ-RQFHQLGIEFIGS 135 (430)
T ss_pred EEEcceecCCCCcCCcc-ceeEEeceEEECC
Confidence 99999999998766666 4999999998765
|
|
| >PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.015 Score=64.21 Aligned_cols=104 Identities=15% Similarity=0.111 Sum_probs=66.2
Q ss_pred CchHHHhhhCCcEEEcCCccccccC---C-C---Cccceee-cc-CCcceeecc--CHHHHHHHhcc-c------CCcEE
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV---E-G---GSTLFSL-NF-FGEPAYLTQ--SSQLYLETCLP-A------LGDVY 221 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~---e-G---~~~~F~~-~~-~~~~~~L~~--Spqlylk~li~-g------~~rvf 221 (658)
+.+++.|.+.||.||+||+|-.... . | ..+.|.. +. -|..+.||- .+++- ++++ . --|+|
T Consensus 25 ~~l~~~f~~~Gy~~i~tP~lE~~e~~~~~~g~~~~~~~~~f~d~~~g~~l~LRpD~T~~ia--R~~a~~~~~~~~p~r~~ 102 (391)
T PRK12292 25 RRLLDLFRRWGYEEVITPTLEYLDTLLAGGGAILDLRTFKLVDQLSGRTLGLRPDMTAQIA--RIAATRLANRPGPLRLC 102 (391)
T ss_pred HHHHHHHHHcCCceeeCcchhhHHHHhccCCccchhhhEEEeecCCCCEEEECCCCcHHHH--HHHHHhccCCCCCeEEE
Confidence 5889999999999999999943211 1 1 1234543 22 366777772 22322 2222 1 23899
Q ss_pred EEeeeeecCCCCCccCcceeeeeeeEeecCC-H---HHHHHHHHHHHHH
Q psy8087 222 CIAQSYRAENSRTRRHLAEYTHVEAECAFLT-F---DDLLDKLEDLICD 266 (658)
Q Consensus 222 eI~~~FR~E~~~~~rHl~EFt~lE~e~a~~d-~---~~~m~~~e~li~~ 266 (658)
.+|+|||.|.... -+.-||+|+.+|.-..+ . -|++.++-+.+..
T Consensus 103 y~g~vfR~~~~~~-gr~ref~Q~g~EiiG~~~~~aDaEvi~l~~~~l~~ 150 (391)
T PRK12292 103 YAGNVFRAQERGL-GRSREFLQSGVELIGDAGLEADAEVILLLLEALKA 150 (391)
T ss_pred eeceeeecCCCcC-CCccchhccceEEeCCCCchHHHHHHHHHHHHHHH
Confidence 9999999997654 44579999999987653 2 3455555444443
|
|
| >cd04478 RPA2_DBD_D RPA2_DBD_D: A subfamily of OB folds corresponding to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32) | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.049 Score=47.35 Aligned_cols=77 Identities=18% Similarity=0.154 Sum_probs=58.4
Q ss_pred EEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCccch--HHhccCCCCcEEEEEEEEEecCCCCCCCCceEEEEEEE
Q psy8087 515 VTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILCQT--EHALLLSTESSVQFRGRIEKVPEGKSAPGGHELKVDYW 592 (658)
Q Consensus 515 V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~~~~--~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~El~~~~i 592 (658)
|++-|+|.++...+..+. +.|.|++|.|-+.+-...... .....+..|+.|.|.|.+..- .|...|.+..+
T Consensus 2 v~~vG~V~~~~~~~~~~~-~tL~D~TG~I~~~~W~~~~~~~~~~~~~~~~g~~v~v~G~v~~~------~g~~ql~i~~i 74 (95)
T cd04478 2 VTLVGVVRNVEEQSTNIT-YTIDDGTGTIEVRQWLDDDNDDSSEVEPIEEGTYVRVFGNLKSF------QGKKSIMAFSI 74 (95)
T ss_pred EEEEEEEEeeeEcccEEE-EEEECCCCcEEEEEeCCCCCcccccccccccCCEEEEEEEEccc------CCeeEEEEEEE
Confidence 789999999998875555 699999999998886433211 234579999999999999432 36678888888
Q ss_pred EEEecC
Q psy8087 593 EVVGLA 598 (658)
Q Consensus 593 ~vls~~ 598 (658)
..+...
T Consensus 75 ~~v~d~ 80 (95)
T cd04478 75 RPVTDF 80 (95)
T ss_pred EEeCCc
Confidence 866643
|
RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B; RPA2 DBD-D is a weak ssDNA-binding domain. RPA2 DBD-D is also involved in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. N-terminal to human RPA2 DBD-D is a domain containing all the known phosphorylation sites of RPA. Human RPA2 is phosphorylated in a cell cycle dependent manner in response to DNA dam |
| >PLN02837 threonine-tRNA ligase | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.017 Score=67.51 Aligned_cols=108 Identities=17% Similarity=0.175 Sum_probs=71.1
Q ss_pred CchHHHhhhCCcEEEcCCccccccC---CC-----Cccceeecc-CCcceeeccCHHH-----HHHHhcc--cC-CcEEE
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV---EG-----GSTLFSLNF-FGEPAYLTQSSQL-----YLETCLP--AL-GDVYC 222 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~---eG-----~~~~F~~~~-~~~~~~L~~Spql-----ylk~li~--g~-~rvfe 222 (658)
+.+++....+||.||.||.|..... -| +.+.|++.. -+..+.|+.+.+- |++.+.. -+ -|++|
T Consensus 255 ~~~~~~~~~~G~~~v~tP~l~~~~l~~~sGh~~~~~~~mf~~~~~~~~~y~l~p~~~p~~~~~~~~~~~SyrdLPlr~~~ 334 (614)
T PLN02837 255 DSWKKMHFEHGYDLLYTPHVAKADLWKTSGHLDFYKENMYDQMDIEDELYQLRPMNCPYHILVYKRKLHSYRDLPIRVAE 334 (614)
T ss_pred HHHHHHHHHCCCEEEECCccCCHHHHhhcCCcccchhhcccccCCCCceEEECCCCcHHHHHHHhCccCChhHCCHhhEe
Confidence 4678888889999999999975421 12 123444321 2344566655443 2333322 13 47999
Q ss_pred EeeeeecCCCCCcc----CcceeeeeeeEeecCCHHHHHHHHHHHHHHHHH
Q psy8087 223 IAQSYRAENSRTRR----HLAEYTHVEAECAFLTFDDLLDKLEDLICDTVD 269 (658)
Q Consensus 223 I~~~FR~E~~~~~r----Hl~EFt~lE~e~a~~d~~~~m~~~e~li~~i~~ 269 (658)
+++|||+|.+.. + =.-||+|.|.+. |.+.++..+..++++..+..
T Consensus 335 ~~~~~R~E~~g~-~~GL~RvreF~~~e~h~-f~~~~q~~~e~~~~l~~~~~ 383 (614)
T PLN02837 335 LGTVYRYELSGS-LHGLFRVRGFTQDDAHI-FCLEDQIKDEIRGVLDLTEE 383 (614)
T ss_pred ecccccCCCCCC-CcCcccccceEECeEEE-EeCHHHHHHHHHHHHHHHHH
Confidence 999999997522 1 124999999995 99988888888888875543
|
|
| >PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.023 Score=59.91 Aligned_cols=99 Identities=14% Similarity=0.211 Sum_probs=64.2
Q ss_pred CchHHHhhhCCcEEEcCCccccccCCC---Cccceee-ccCCcceeeccCHHHHHH--Hhcc------c-CCcEEEEeee
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQVEG---GSTLFSL-NFFGEPAYLTQSSQLYLE--TCLP------A-LGDVYCIAQS 226 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~eG---~~~~F~~-~~~~~~~~L~~Spqlylk--~li~------g-~~rvfeI~~~ 226 (658)
+.+++.|...||-||+||++-....-+ ..+.|.. +.-|..+.|| |++=.+ ++++ . --|.|.+|++
T Consensus 27 ~~l~~vf~~~Gy~~I~tP~lE~~e~~~~~~~~~~y~~~D~~g~~l~LR--pD~T~~iaR~~a~~~~~~~~p~r~~Y~g~v 104 (281)
T PRK12293 27 NVASEILYENGFEEIVTPFFSYHQHQSIADEKELIRFSDEKNHQISLR--ADSTLDVVRIVTKRLGRSTEHKKWFYIQPV 104 (281)
T ss_pred HHHHHHHHHcCCeEeeccceeehhhhcccchhceEEEECCCCCEEEEC--CcCCHHHHHHHHHhcccCCCceeEEEeccE
Confidence 578889999999999999995332211 1234543 2345667776 333222 1221 1 2389999999
Q ss_pred eecCCCCCccCcceeeeeeeEeecC-CHHHHHHHHHHHHHHH
Q psy8087 227 YRAENSRTRRHLAEYTHVEAECAFL-TFDDLLDKLEDLICDT 267 (658)
Q Consensus 227 FR~E~~~~~rHl~EFt~lE~e~a~~-d~~~~m~~~e~li~~i 267 (658)
||.|. .||+|+.+|.-.. +..|++.++-+.+..+
T Consensus 105 fR~~~-------rEf~Q~GvEliG~~~~~Evi~la~~~l~~l 139 (281)
T PRK12293 105 FRYPS-------NEIYQIGAELIGEEDLSEILNIAAEIFEEL 139 (281)
T ss_pred EecCC-------CcccccCeEeeCCCCHHHHHHHHHHHHHHc
Confidence 99873 4999999999887 4655555555544433
|
|
| >TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.023 Score=60.72 Aligned_cols=90 Identities=19% Similarity=0.209 Sum_probs=61.2
Q ss_pred CchHHHhhhCCcEEEcCCccccccC---CCC---ccceee-ccCCcceeecc--CHHHHHHHhcc---c---CCcEEEEe
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV---EGG---STLFSL-NFFGEPAYLTQ--SSQLYLETCLP---A---LGDVYCIA 224 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~---eG~---~~~F~~-~~~~~~~~L~~--Spqlylk~li~---g---~~rvfeI~ 224 (658)
..+++.|.++||.||+||+|..... .++ .+.|+. +.-|..+.||- .|++-. .+.. + --|+|++|
T Consensus 16 ~~l~~~~~~~Gy~~i~tP~le~~~~~~~~~~~~~~~~~~~~d~~g~~l~LRpD~T~~iaR-~~~~~~~~~~~p~r~~y~g 94 (314)
T TIGR00443 16 RQLQDVFRSWGYQEIITPTLEYLDTLSAGGGILNEDLFKLFDSLGRVLGLRPDMTTPIAR-AVSTRLRDRPLPLRLCYAG 94 (314)
T ss_pred HHHHHHHHHcCCeeccCcchhhHHHhcccCCcchhceEEEECCCCCEEeecCcCcHHHHH-HHHHhcccCCCCeEEEEec
Confidence 5789999999999999999854321 111 234533 33467777873 344322 2221 2 35899999
Q ss_pred eeeecCCCCCccCcceeeeeeeEeecC
Q psy8087 225 QSYRAENSRTRRHLAEYTHVEAECAFL 251 (658)
Q Consensus 225 ~~FR~E~~~~~rHl~EFt~lE~e~a~~ 251 (658)
+|||.|.... -+.-||+|+.+|.-..
T Consensus 95 ~VfR~~~~~~-gr~re~~Q~g~Eiig~ 120 (314)
T TIGR00443 95 NVFRTNESGA-GRSREFTQAGVELIGA 120 (314)
T ss_pred eEeecCCCcC-CCcccccccceEEeCC
Confidence 9999998744 5678999999998655
|
Apparant second copies of histidyl-tRNA synthetase, found in Bacillus subtilis, Synechocystis sp., Aquifex aeolicus, and others, are in fact a regulatory subunit of ATP phosphoribosyltransferase, and usually encoded by a gene adjacent to that encoding the catalytic subunit. |
| >cd04489 ExoVII_LU_OBF ExoVII_LU_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold domain of Escherichia coli exodeoxyribonuclease VII (ExoVII) large subunit | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.05 Score=45.30 Aligned_cols=61 Identities=20% Similarity=0.296 Sum_probs=48.2
Q ss_pred EEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccchhhhhhcCCCccEEEEEEEeEeCC
Q psy8087 73 INIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVP 134 (658)
Q Consensus 73 v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~~~~~~~~l~~es~V~v~G~l~~~p 134 (658)
++|.|-|.++|...++++|++|.|.++.+.+++-.+....+ ...+..|+.|.|.|.+...+
T Consensus 2 ~~v~g~v~~i~~tk~g~~~~~L~D~~~~i~~~~f~~~~~~~-~~~l~~g~~v~v~g~v~~~~ 62 (78)
T cd04489 2 VWVEGEISNLKRPSSGHLYFTLKDEDASIRCVMWRSNARRL-GFPLEEGMEVLVRGKVSFYE 62 (78)
T ss_pred EEEEEEEecCEECCCcEEEEEEEeCCeEEEEEEEcchhhhC-CCCCCCCCEEEEEEEEEEEC
Confidence 67899999988744459999999999999998877643221 13689999999999998543
|
E. coli ExoVII is composed of two non-identical subunits. E. coli ExoVII is a single-strand-specific exonuclease which degrades ssDNA from both 3-prime and 5-prime ends. ExoVII plays a role in methyl-directed mismatch repair in vivo. ExoVII may also guard the genome from mutagenesis by removing excess ssDNA, since the build up of ssDNA would lead to SOS induction and PolIV-dependent mutagenesis. |
| >PLN02678 seryl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.028 Score=62.77 Aligned_cols=107 Identities=13% Similarity=0.208 Sum_probs=63.9
Q ss_pred CchHHHhhhCCcEEEcCCccccccC-CCCc-------cceeeccCCcceeeccCH-----HHHHHHhcc--cC-CcEEEE
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV-EGGS-------TLFSLNFFGEPAYLTQSS-----QLYLETCLP--AL-GDVYCI 223 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~-eG~~-------~~F~~~~~~~~~~L~~Sp-----qlylk~li~--g~-~rvfeI 223 (658)
+.+++++..+||.||.||.|..... +|.+ +.|++.--|.+.||.-.. -+|....+. -+ =|++++
T Consensus 182 ~y~ld~~~~~Gy~~V~~P~lv~~~~~~~sG~~~~f~e~my~i~~~~~~~yLi~TaE~~l~~~h~~~~~s~~eLPlr~~~~ 261 (448)
T PLN02678 182 NFGLAFLRKRGYTPLQTPFFMRKDVMAKCAQLAQFDEELYKVTGEGDDKYLIATSEQPLCAYHRGDWIDPKELPIRYAGY 261 (448)
T ss_pred HHHHHHHHHcCCEEEECcccccHHHHhhcCCcccchhcCceecCCCCceeeecccccccChHHhcccCCHHhCCceeEEe
Confidence 4777888889999999999965421 2211 234442222345554321 122222222 13 479999
Q ss_pred eeeeecCCCCCc--c----CcceeeeeeeEeecCCHHH--HHHHHHHHHHHH
Q psy8087 224 AQSYRAENSRTR--R----HLAEYTHVEAECAFLTFDD--LLDKLEDLICDT 267 (658)
Q Consensus 224 ~~~FR~E~~~~~--r----Hl~EFt~lE~e~a~~d~~~--~m~~~e~li~~i 267 (658)
++|||+|.+... + -.-+|+++|.+ .|..-++ ..+..|+|+...
T Consensus 262 s~cfR~Eags~G~~~~GL~RvhqF~KvE~f-~~~~pe~~~s~~~~e~~l~~~ 312 (448)
T PLN02678 262 STCFRKEAGSHGRDTLGIFRVHQFEKVEQF-CITSPNGNESWEMHEEMLKNS 312 (448)
T ss_pred ccccccccccCCCcCCcceEEEEEEEEEEE-EEECCCchhHHHHHHHHHHHH
Confidence 999999976211 1 12399999994 4555555 677777777654
|
|
| >PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.037 Score=61.13 Aligned_cols=105 Identities=10% Similarity=0.079 Sum_probs=67.0
Q ss_pred CchHHHhhhCCcEEEcCCccccccC---C-CC---ccceee-cc-CCcceeeccCHHHHHH--Hhcc-----c-CCcEEE
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV---E-GG---STLFSL-NF-FGEPAYLTQSSQLYLE--TCLP-----A-LGDVYC 222 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~---e-G~---~~~F~~-~~-~~~~~~L~~Spqlylk--~li~-----g-~~rvfe 222 (658)
+.+++.|...||.||+||++-.... . |. ...|.. +. -|..+.|| |++=.. ++++ . --|.|.
T Consensus 29 ~~l~~~f~~~Gy~~I~tP~~E~~e~~~~~~g~~~~~~~y~f~D~~~g~~l~LR--pD~T~~iaR~~a~~~~~~~p~R~~Y 106 (392)
T PRK12421 29 RRLLDLFASRGYQLVMPPLIEYLESLLTGAGQDLKLQTFKLIDQLSGRLMGVR--ADITPQVARIDAHLLNREGVARLCY 106 (392)
T ss_pred HHHHHHHHHcCCEEeeCcchhhHHHHhccCCccchhceEEEEcCCCCcEEEEC--CcCCHHHHHHHHhhcCCCCceEEEE
Confidence 5789999999999999999953321 1 21 124443 22 25566676 232222 2221 1 358999
Q ss_pred EeeeeecCCCCCccCcceeeeeeeEeecCC-HH---HHHHHHHHHHHHH
Q psy8087 223 IAQSYRAENSRTRRHLAEYTHVEAECAFLT-FD---DLLDKLEDLICDT 267 (658)
Q Consensus 223 I~~~FR~E~~~~~rHl~EFt~lE~e~a~~d-~~---~~m~~~e~li~~i 267 (658)
+|+|||.+.....|. -||+|+.+|.-..+ .. |++.++-+.++.+
T Consensus 107 ~g~VfR~~~~~~gr~-rEf~Q~GvEiiG~~~~~aDaEvi~l~~e~l~~l 154 (392)
T PRK12421 107 AGSVLHTLPQGLFGS-RTPLQLGAELYGHAGIEADLEIIRLMLGLLRNA 154 (392)
T ss_pred eeeEEEcCCCcCCCc-CccceeceEEeCCCCchhHHHHHHHHHHHHHHc
Confidence 999999987654454 69999999987763 33 6666666555543
|
|
| >cd04482 RPA2_OBF_like RPA2_OBF_like: A subgroup of uncharacterized archaeal OB folds with similarity to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32) | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.079 Score=46.10 Aligned_cols=74 Identities=26% Similarity=0.384 Sum_probs=55.1
Q ss_pred EEEEEEEeeecC-CCceEEEEEEeCCEEEEEEEcCCccch-HHhccCCCCcEEEEEEEEEecCCCCCCCCceEEEEEEEE
Q psy8087 516 TIFGWVHRLRRQ-GKGLMFVTLRDGSGFIQCVLADILCQT-EHALLLSTESSVQFRGRIEKVPEGKSAPGGHELKVDYWE 593 (658)
Q Consensus 516 ~v~GwI~~~R~~-Gkkl~Fi~Lrd~~~~iQvv~~~~~~~~-~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~El~~~~i~ 593 (658)
+|.|.|.+.+.+ .++=.|+.|.|+++.|.|++-.....+ .....|..||-|.|.|.+.. .+ .|.+++++
T Consensus 2 ~v~GeVs~~~~~~~sGH~yFtlkD~~~~i~cv~f~~~g~~~~~~~~l~~Gd~V~v~G~v~~--------y~-ql~ve~l~ 72 (91)
T cd04482 2 RVTGKVVEEPRTIEGGHVFFKISDGTGEIDCAAYEPTKEFRDVVRLLIPGDEVTVYGSVRP--------GT-TLNLEKLR 72 (91)
T ss_pred EEEEEEeCCeecCCCCCEEEEEECCCcEEEEEEECcccccccccCCCCCCCEEEEEEEEec--------CC-EEEEEEEE
Confidence 689999988653 235688899999999999887543211 34457999999999999832 12 68999999
Q ss_pred EEecC
Q psy8087 594 VVGLA 598 (658)
Q Consensus 594 vls~~ 598 (658)
+++..
T Consensus 73 ~~glg 77 (91)
T cd04482 73 VIRLA 77 (91)
T ss_pred ECCCc
Confidence 87654
|
RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B; RPA2 DBD-D is a weak ssDNA-binding domain. RPA2 DBD-D is also involved in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. N-terminal to human RPA2 DBD-D is a domain containing all the known phosphorylation sites of RPA. Human RPA2 is phosphorylated in a cell cycle depende |
| >PF13393 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI_E 3HRK_A 3LC0_A 1Z7N_A 1Z7M_D 3NET_A 1H4V_B 3OD1_A 4E51_B 3RAC_A | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.056 Score=57.50 Aligned_cols=103 Identities=15% Similarity=0.225 Sum_probs=63.6
Q ss_pred CchHHHhhhCCcEEEcCCccccccC------CCCccceee-ccCCcceeeccCHHHHHH--Hhcc------cCCcEEEEe
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV------EGGSTLFSL-NFFGEPAYLTQSSQLYLE--TCLP------ALGDVYCIA 224 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~------eG~~~~F~~-~~~~~~~~L~~Spqlylk--~li~------g~~rvfeI~ 224 (658)
+.+++.|..+||.||+||+|..... +...+.|+. +--|..+.|| |++=.+ ++++ -..|+|.+|
T Consensus 18 ~~l~~~f~~~Gy~~i~~P~le~~~~~~~~~~~~~~~~~~~~D~~G~~l~LR--~D~T~~iaR~~a~~~~~~~~~r~~y~g 95 (311)
T PF13393_consen 18 SKLREVFERHGYEEIETPLLEYYELFLDKSGEDSDNMYRFLDRSGRVLALR--PDLTVPIARYVARNLNLPRPKRYYYIG 95 (311)
T ss_dssp HHHHHHHHHTT-EE-B--SEEEHHHHHCHSSTTGGCSEEEECTTSSEEEE---SSSHHHHHHHHHHCCGSSSSEEEEEEE
T ss_pred HHHHHHHHHcCCEEEECCeEeecHHhhhccccchhhhEEEEecCCcEeccC--CCCcHHHHHHHHHhcCcCCCceEEEEc
Confidence 5789999999999999999954321 111234433 3346667776 333322 2222 247899999
Q ss_pred eeeecCCCCCccCcceeeeeeeEeecCC-HH---HHHHHHHHHHH
Q psy8087 225 QSYRAENSRTRRHLAEYTHVEAECAFLT-FD---DLLDKLEDLIC 265 (658)
Q Consensus 225 ~~FR~E~~~~~rHl~EFt~lE~e~a~~d-~~---~~m~~~e~li~ 265 (658)
++||.+.... .+.-||+|+.+|.-..+ .. |++.++-+++.
T Consensus 96 ~vfR~~~~~~-g~~re~~Q~g~Eiig~~~~~~daEvi~l~~e~l~ 139 (311)
T PF13393_consen 96 PVFRYERPGK-GRPREFYQCGFEIIGSSSLEADAEVIKLADEILD 139 (311)
T ss_dssp EEEEEETTTT-TBESEEEEEEEEEESSSSHHHHHHHHHHHHHHHH
T ss_pred ceeeccccCC-CCCceeEEEEEEEECCCCHHHHHHHHHHHHHHHH
Confidence 9999997644 45579999999988764 43 55555555554
|
... |
| >PLN02530 histidine-tRNA ligase | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.04 Score=62.56 Aligned_cols=90 Identities=21% Similarity=0.212 Sum_probs=60.3
Q ss_pred CchHHHhhhCCcEEEcCCccccccC----CCC---ccceee-ccCCcceeeccCHHHHHH--Hhcc-c-----C-CcEEE
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV----EGG---STLFSL-NFFGEPAYLTQSSQLYLE--TCLP-A-----L-GDVYC 222 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~----eG~---~~~F~~-~~~~~~~~L~~Spqlylk--~li~-g-----~-~rvfe 222 (658)
..+++.|...||-||+||+|-.... .|. .+.|.. +.-|..+.|| |++=.. ++++ . + -|.|+
T Consensus 92 ~~~~~~~~~~Gy~~I~tP~lE~~el~~~~~g~~~~~~~y~f~D~~g~~l~LR--pD~T~~iaR~~~~~~~~~~~P~r~~y 169 (487)
T PLN02530 92 DHFREVSRLFGFEEVDAPVLESEELYIRKAGEEITDQLYNFEDKGGRRVALR--PELTPSLARLVLQKGKSLSLPLKWFA 169 (487)
T ss_pred HHHHHHHHHcCCEeccccccchHHHhccccCcccccceEEEECCCCCEEecC--CCCcHHHHHHHHhcccccCCCeEEEE
Confidence 5789999999999999999954211 121 124533 3346667776 344333 2222 1 2 38999
Q ss_pred EeeeeecCCCCCccCcceeeeeeeEeecCC
Q psy8087 223 IAQSYRAENSRTRRHLAEYTHVEAECAFLT 252 (658)
Q Consensus 223 I~~~FR~E~~~~~rHl~EFt~lE~e~a~~d 252 (658)
+|+|||.|.....| .-||+|+.+|.-..+
T Consensus 170 ~g~vfR~e~~q~gr-~REf~Q~giEiiG~~ 198 (487)
T PLN02530 170 IGQCWRYERMTRGR-RREHYQWNMDIIGVP 198 (487)
T ss_pred EcCEEcCcCCCCCC-ccceEEcCeeEeCCC
Confidence 99999999865444 469999999987653
|
|
| >PLN02972 Histidyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.071 Score=62.84 Aligned_cols=104 Identities=18% Similarity=0.247 Sum_probs=65.8
Q ss_pred CchHHHhhhCCcEEEcCCccccccC----CCC--ccceee-ccCCcceeeccCHHHHHH--Hhcc--c--CCcEEEEeee
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV----EGG--STLFSL-NFFGEPAYLTQSSQLYLE--TCLP--A--LGDVYCIAQS 226 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~----eG~--~~~F~~-~~~~~~~~L~~Spqlylk--~li~--g--~~rvfeI~~~ 226 (658)
+.+++.|..+||.||+||+|-.... .|. .+.|.+ +.-|..+.|| |++=.. ++++ . --|.|+||++
T Consensus 349 ~~L~~vFk~hGy~eI~TPvfE~~Ell~~k~Ged~k~mY~f~D~gGr~LaLR--PDlTvPiAR~vA~n~~~p~KrYyiG~V 426 (763)
T PLN02972 349 SIITSVFKRHGATALDTPVFELRETLMGKYGEDSKLIYDLADQGGELCSLR--YDLTVPFARYVAMNGITSFKRYQIAKV 426 (763)
T ss_pred HHHHHHHHHcCCEEccCCcccchHHhhcccCcchhheEEEECCCCCEEEeC--CCChHHHHHHHHhCCCCcceEEEeccE
Confidence 4788999999999999999843211 111 234533 3345666776 333332 3332 1 2478889999
Q ss_pred eecCCCCCccCcceeeeeeeEeecC-C----HHHHHHHHHHHHHH
Q psy8087 227 YRAENSRTRRHLAEYTHVEAECAFL-T----FDDLLDKLEDLICD 266 (658)
Q Consensus 227 FR~E~~~~~rHl~EFt~lE~e~a~~-d----~~~~m~~~e~li~~ 266 (658)
||.|.... -+.-||+|+++|.... + --|++.++-+.+..
T Consensus 427 FR~e~pqk-GR~REF~Q~G~EIIG~~~~~~aDAEVI~La~E~L~~ 470 (763)
T PLN02972 427 YRRDNPSK-GRYREFYQCDFDIAGVYEPMGPDFEIIKVLTELLDE 470 (763)
T ss_pred EecCCCCC-CCCccceEEeEEEEcCCCcchhhHHHHHHHHHHHHh
Confidence 99997644 3457999999999875 2 13455555555443
|
|
| >COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.075 Score=59.02 Aligned_cols=103 Identities=13% Similarity=0.217 Sum_probs=67.7
Q ss_pred CchHHHhhhCCcEEEcCCccccccC----CCCc------cceee-ccCCcceeeccCHHHH--HHHhcc------c-CCc
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV----EGGS------TLFSL-NFFGEPAYLTQSSQLY--LETCLP------A-LGD 219 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~----eG~~------~~F~~-~~~~~~~~L~~Spqly--lk~li~------g-~~r 219 (658)
+.+|+-+.+-||.||.||++-.... -|.. +.+.. +--|..+.|| ||+= .=++++ . --|
T Consensus 26 ~~~~~v~~~yGf~eI~TPifE~telf~r~~Ge~td~v~kemY~F~Dkggr~laLR--pe~Tapv~R~~~en~~~~~~p~k 103 (429)
T COG0124 26 STIRKVFESYGFSEIRTPIFEYTELFARKSGEETDVVEKEMYTFKDKGGRSLALR--PELTAPVARAVAENKLDLPKPLK 103 (429)
T ss_pred HHHHHHHHHcCCEeccCccccchhHhhhccCCcccccccceEEEEeCCCCEEEec--ccCcHHHHHHHHhccccccCCee
Confidence 5889999999999999999843321 1221 12222 2235677777 3432 112222 2 248
Q ss_pred EEEEeeeeecCCCCCccCcceeeeeeeEeecCC----HHHHHHHHHHHHH
Q psy8087 220 VYCIAQSYRAENSRTRRHLAEYTHVEAECAFLT----FDDLLDKLEDLIC 265 (658)
Q Consensus 220 vfeI~~~FR~E~~~~~rHl~EFt~lE~e~a~~d----~~~~m~~~e~li~ 265 (658)
.|.+|||||.|.....|- =||+|+++|.-..+ --|++.++-+++.
T Consensus 104 ~yy~g~vfRyErPQ~GR~-RqF~Q~g~E~iG~~~~~~DAEvi~l~~~~l~ 152 (429)
T COG0124 104 LYYFGPVFRYERPQKGRY-RQFYQFGVEVIGSDSPDADAEVIALAVEILE 152 (429)
T ss_pred EEEecceecCCCCCCCCc-eeeEEcCeEEeCCCCcccCHHHHHHHHHHHH
Confidence 999999999999888787 49999999998863 2355555555444
|
|
| >PRK12420 histidyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.062 Score=59.96 Aligned_cols=104 Identities=16% Similarity=0.225 Sum_probs=67.1
Q ss_pred CchHHHhhhCCcEEEcCCcccccc--CC--CCc-----cceee-ccCCcceeeccCHHHHHH--Hhcc---c--CC-cEE
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQ--VE--GGS-----TLFSL-NFFGEPAYLTQSSQLYLE--TCLP---A--LG-DVY 221 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~--~e--G~~-----~~F~~-~~~~~~~~L~~Spqlylk--~li~---g--~~-rvf 221 (658)
..+++.|...||.||.||+|.... .. |+. +.|.+ +.-|..+.|| |++=.. ++++ . .. |.|
T Consensus 26 ~~l~~~f~~~Gy~~i~tP~lE~~~~~~~~~~~~~~~~~~~~~~~D~~g~~l~LR--pD~T~~iaR~va~~~~~~~p~r~~ 103 (423)
T PRK12420 26 RALEDVFERYGCKPLETPTLNMYELMSSKYGGGDEILKEIYTLTDQGKRDLALR--YDLTIPFAKVVAMNPNIRLPFKRY 103 (423)
T ss_pred HHHHHHHHHcCCEeccccccchHHHHhcccCCCcccccceEEEecCCCceeccc--ccccHHHHHHHHhCcCCCCCeeEE
Confidence 578999999999999999996432 11 211 23432 3336666666 333333 2222 1 22 899
Q ss_pred EEeeeeecCCCCCccCcceeeeeeeEeecCC----HHHHHHHHHHHHHH
Q psy8087 222 CIAQSYRAENSRTRRHLAEYTHVEAECAFLT----FDDLLDKLEDLICD 266 (658)
Q Consensus 222 eI~~~FR~E~~~~~rHl~EFt~lE~e~a~~d----~~~~m~~~e~li~~ 266 (658)
++|+|||.|.... -+.-||+|+.+|.-..+ --|++.++-+.++.
T Consensus 104 y~g~vfR~~~~~~-gr~rE~~Q~g~EiiG~~~~~adaEvi~la~~~l~~ 151 (423)
T PRK12420 104 EIGKVFRDGPIKQ-GRFREFIQCDVDIVGVESVMAEAELMSMAFELFRR 151 (423)
T ss_pred EEcceECCCCCCC-CccceeEECCeeeECCCCCcccHHHHHHHHHHHHH
Confidence 9999999997654 45679999999987652 24555555555543
|
|
| >COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.032 Score=62.54 Aligned_cols=87 Identities=20% Similarity=0.231 Sum_probs=66.1
Q ss_pred eecccCCccCCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCCCCC
Q psy8087 502 IKIKDGEKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEGKSA 581 (658)
Q Consensus 502 ~~i~~~~~~~g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~~ 581 (658)
+.+.++....|++|.|.|-|..++..+ +-+-++|+|++|.+++-+..... ....-.+..||+|.|+|.|....
T Consensus 203 ~~i~~id~~ig~tV~I~GeV~qikqT~-GPTVFtltDetg~i~aAAFe~aG-vRAyP~IevGdiV~ViG~V~~r~----- 275 (715)
T COG1107 203 TLIDDLDEMIGKTVRIEGEVTQIKQTS-GPTVFTLTDETGAIWAAAFEEAG-VRAYPEIEVGDIVEVIGEVTRRD----- 275 (715)
T ss_pred ccHHHHHhhcCceEEEEEEEEEEEEcC-CCEEEEEecCCCceehhhhccCC-cccCCCCCCCceEEEEEEEeecC-----
Confidence 345556668999999999999998876 56667999999999988754211 12233699999999999996543
Q ss_pred CCceEEEEEEEEEEe
Q psy8087 582 PGGHELKVDYWEVVG 596 (658)
Q Consensus 582 ~g~~El~~~~i~vls 596 (658)
|.+-|.+..++.|.
T Consensus 276 -g~lQiE~~~me~L~ 289 (715)
T COG1107 276 -GRLQIEIEAMEKLT 289 (715)
T ss_pred -CcEEEeehhhHHhh
Confidence 66777777777664
|
|
| >cd04485 DnaE_OBF DnaE_OBF: A subfamily of OB folds corresponding to the C-terminal OB-fold nucleic acid binding domain of Thermus aquaticus and Escherichia coli type C replicative DNA polymerase III alpha subunit (DnaE) | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.12 Score=42.80 Aligned_cols=73 Identities=29% Similarity=0.424 Sum_probs=51.8
Q ss_pred EEEEEEeee----cCCCceEEEEEEeCCEEEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCCCCCCCceEEEEEEE
Q psy8087 517 IFGWVHRLR----RQGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEGKSAPGGHELKVDYW 592 (658)
Q Consensus 517 v~GwI~~~R----~~Gkkl~Fi~Lrd~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~El~~~~i 592 (658)
+.|.|.+++ ..|+.++|+.|.|++|.+.|++-.+.. ......+..|..|.|.|.+... .+.+++.+.++
T Consensus 2 i~g~v~~~~~~~~k~g~~~~~~~l~D~tg~~~~~~f~~~~-~~~~~~l~~g~~v~v~G~v~~~------~~~~~l~~~~i 74 (84)
T cd04485 2 VAGLVTSVRRRRTKKGKRMAFVTLEDLTGSIEVVVFPETY-EKYRDLLKEDALLLVEGKVERR------DGGLRLIAERI 74 (84)
T ss_pred EEEEEEEeEEEEcCCCCEEEEEEEEeCCCeEEEEECHHHH-HHHHHHhcCCCEEEEEEEEEec------CCceEEEeecc
Confidence 556665532 345568999999999999999875321 0234568999999999999542 25688888777
Q ss_pred EEEe
Q psy8087 593 EVVG 596 (658)
Q Consensus 593 ~vls 596 (658)
..+.
T Consensus 75 ~~~~ 78 (84)
T cd04485 75 EDLE 78 (84)
T ss_pred ccHH
Confidence 6543
|
The DNA polymerase holoenzyme of E. coli contains two copies of this replicative polymerase, each of which copies a different DNA strand. This group also contains Bacillus subtilis DnaE. Replication in B. subtilis and Staphylococcus aureus requires two different type C polymerases, polC and DnaE, both of which are thought to be included in the DNA polymerase holoenzyme. At the B. subtilis replication fork, polC appears to be involved in leading strand synthesis and DnaE in lagging strand synthesis. |
| >PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.12 Score=56.61 Aligned_cols=101 Identities=16% Similarity=0.201 Sum_probs=63.9
Q ss_pred CchHHHhhhCCcEEEcCCccccccC----CCC---ccceee-ccCCcceeeccCHHHHHH--Hh-cc----cCCcEEEEe
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV----EGG---STLFSL-NFFGEPAYLTQSSQLYLE--TC-LP----ALGDVYCIA 224 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~----eG~---~~~F~~-~~~~~~~~L~~Spqlylk--~l-i~----g~~rvfeI~ 224 (658)
..+++.|...||.||+||++-.... .|. ...|.. +.-|..+.|| |++=.. ++ +. .--|.|.+|
T Consensus 12 ~~i~~~f~~~Gy~~I~tP~lE~~e~~~~~~g~~~~~~~~~f~D~~G~~l~LR--pD~T~piaR~~~~~~~~~p~R~~Y~g 89 (373)
T PRK12295 12 EALLASFEAAGAVRVDPPILQPAEPFLDLSGEDIRRRIFVTSDENGEELCLR--PDFTIPVCRRHIATAGGEPARYAYLG 89 (373)
T ss_pred HHHHHHHHHcCCEEeeCCccccHHHhhhccCchhhcceEEEECCCCCEEeeC--CCCcHHHHHHHHHcCCCCCeEEEEEc
Confidence 4788999999999999999954321 111 124433 2335667776 222222 11 11 235899999
Q ss_pred eeeecCCCCCccCcceeeeeeeEeecC-C-H---HHHHHHHHHHHHH
Q psy8087 225 QSYRAENSRTRRHLAEYTHVEAECAFL-T-F---DDLLDKLEDLICD 266 (658)
Q Consensus 225 ~~FR~E~~~~~rHl~EFt~lE~e~a~~-d-~---~~~m~~~e~li~~ 266 (658)
+|||.|.. | .-||+|+.+|.-.. + . -|++.++-+.+..
T Consensus 90 ~VfR~~~g---r-~rEf~Q~GvEiiG~~~~~~aDaEvi~l~~~~L~~ 132 (373)
T PRK12295 90 EVFRQRRD---R-ASEFLQAGIESFGRADPAAADAEVLALALEALAA 132 (373)
T ss_pred cEEECCCC---C-CCcceEeeEEeeCCCCCccchHHHHHHHHHHHHH
Confidence 99999832 2 36999999999774 3 2 2666666555543
|
|
| >PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.017 Score=63.60 Aligned_cols=45 Identities=18% Similarity=0.234 Sum_probs=42.0
Q ss_pred CCChhhhcccceeeeechhhHHHHHH-----HHHHHHHHHHHhhcCCcEEecCC
Q psy8087 610 EALPDVQLDNRHIMIRGENTSRVLLM-----RSVLLQALRAHFADRNYTEVNIE 658 (658)
Q Consensus 610 ~~~~e~r~~~R~LdLR~~~~~~ifr~-----Rs~i~~~iR~fL~~~gF~EVeTp 658 (658)
..+.|+++++| |.+..+++|.+ .+.+.+.+|++|...||.||.||
T Consensus 179 ~~~~e~~l~~r----r~~~~~~~~~~g~~~~~s~Le~aIR~~f~~~GF~EV~TP 228 (417)
T PRK09537 179 FKELESELVSR----RKNDLKQMYEEDREDYLGKLERDITKFFVDRGFLEIKSP 228 (417)
T ss_pred hhhHHHHHHHh----cchhhHHhhccCCCCHHHHHHHHHHHHHHHCCCEEEECC
Confidence 34678999999 88999999999 99999999999999999999998
|
|
| >PLN02320 seryl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.065 Score=60.42 Aligned_cols=105 Identities=20% Similarity=0.349 Sum_probs=68.9
Q ss_pred CchHHHhhhCCcEEEcCCccccccC-CCCc-c-------ceeeccCCcceeeccCHH-----HHHHHhcc-c-C-CcEEE
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV-EGGS-T-------LFSLNFFGEPAYLTQSSQ-----LYLETCLP-A-L-GDVYC 222 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~-eG~~-~-------~F~~~~~~~~~~L~~Spq-----lylk~li~-g-~-~rvfe 222 (658)
+.+++++..+||.||.||.|..... +|.+ . +|+++ +.++||.-..| +|....+. . + =|+++
T Consensus 241 ~f~ld~~~~~Gy~eV~tP~lv~~~l~~~sG~~p~~e~~~~y~ie--~ed~~Li~TaE~Pl~~~~~~~ils~~dLPlRy~~ 318 (502)
T PLN02320 241 NWTLSEVMKKGFTPLTTPEIVRSSVVEKCGFQPRGDNTQVYSID--GSDQCLIGTAEIPVGGIHMDSILLESALPLKYVA 318 (502)
T ss_pred HHHHHHHHHcCCEEEECCccchHHHHHhcCCCcccccCceeEEC--CCceEEeecccccccccccccccCHhhCCceeEE
Confidence 4566667788999999999975431 2222 1 12222 45678732222 45544443 2 3 58999
Q ss_pred EeeeeecCCCCC--------ccCcceeeeeeeEeecCCHHHHHHHHHHHHHHHHH
Q psy8087 223 IAQSYRAENSRT--------RRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVD 269 (658)
Q Consensus 223 I~~~FR~E~~~~--------~rHl~EFt~lE~e~a~~d~~~~m~~~e~li~~i~~ 269 (658)
+++|||.|.+.. +-| +|++.|... |..-++..+..++|+..+-.
T Consensus 319 ~s~cFR~EAgs~G~d~rGL~Rvh--QF~KvE~~i-f~~peqs~~e~e~ll~~~e~ 370 (502)
T PLN02320 319 FSHCFRTEAGAAGAATRGLYRVH--QFSKVEMFV-ICRPEESESFHEELIQIEED 370 (502)
T ss_pred eccccccccccCCCcCCCceeee--eeecccEEE-EECHHHHHHHHHHHHHHHHH
Confidence 999999996522 224 899999875 57788888888888876543
|
|
| >PRK04173 glycyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.061 Score=60.54 Aligned_cols=48 Identities=21% Similarity=0.240 Sum_probs=37.3
Q ss_pred cEEEEeeeeecCCCCCccCc----ceeeeeeeEeecCCHHHHHHHHHHHHHHHHH
Q psy8087 219 DVYCIAQSYRAENSRTRRHL----AEYTHVEAECAFLTFDDLLDKLEDLICDTVD 269 (658)
Q Consensus 219 rvfeI~~~FR~E~~~~~rHl----~EFt~lE~e~a~~d~~~~m~~~e~li~~i~~ 269 (658)
|+.|+|+|||||-+ + +|- -||||.|.+ .|.+.+++.+.+..++..+..
T Consensus 188 r~aq~g~~~RnE~s-~-~~gL~RvReF~q~e~h-iF~~peq~~~e~~~~l~~~~~ 239 (456)
T PRK04173 188 GIAQIGKSFRNEIT-P-RNFIFRTREFEQMELE-FFVKPGTDNEWFAYWIELRKN 239 (456)
T ss_pred eeeEEchhHhCccC-C-CCCceeeceeeeeEEE-EEECcChHHHHHHHHHHHHHH
Confidence 79999999999976 4 543 799999997 788888877766666654433
|
|
| >cd04483 hOBFC1_like hOBFC1_like: A subfamily of OB folds similar to that found in human OB fold containing protein 1 (hOBFC1) | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.3 Score=42.60 Aligned_cols=70 Identities=24% Similarity=0.363 Sum_probs=50.7
Q ss_pred EEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCccc-------------------hHHhccCCCCcEEEEEEEEEecCC
Q psy8087 517 IFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILCQ-------------------TEHALLLSTESSVQFRGRIEKVPE 577 (658)
Q Consensus 517 v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~~~-------------------~~~~~~L~~gs~V~V~G~v~~~~~ 577 (658)
|-|+|.+++.... -.-+.|.|++|.|-|++=..... .+....+..|++|.|.|.+..=
T Consensus 2 ivG~V~sv~~~~~-~~~~tLdDgTG~Ie~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~G~vvrV~G~i~~f-- 78 (92)
T cd04483 2 ILGTVVSRRERET-FYSFGVDDGTGVVNCVCWKNLSYAEVSSRSDAARILKSALMALKQAKVLEIGDLLRVRGSIRTY-- 78 (92)
T ss_pred eEEEEEEEEecCC-eEEEEEecCCceEEEEEEcCcCcccccccccccccccccccccccccccCCCCEEEEEEEEecc--
Confidence 6799999988764 45579999999999888543210 0244569999999999999542
Q ss_pred CCCCCCceEEEEEEEE
Q psy8087 578 GKSAPGGHELKVDYWE 593 (658)
Q Consensus 578 ~~~~~g~~El~~~~i~ 593 (658)
.|...|.++.+.
T Consensus 79 ----rg~~ql~i~~~~ 90 (92)
T cd04483 79 ----RGEREINASVVY 90 (92)
T ss_pred ----CCeeEEEEEEEE
Confidence 355667766554
|
Members of this group belong to the Replication protein A subunit 2 (RPA2) family of OB folds. RPA is a nuclear ssDNA binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The OB fold domain of RPA2 has dual roles in ssDNA binding and trimerization. |
| >cd04492 YhaM_OBF_like YhaM_OBF_like: A subfamily of OB folds similar to that found in Bacillus subtilis YhaM and Staphylococcus aureus cmp-binding factor-1 (SaCBF1) | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.57 Score=38.94 Aligned_cols=66 Identities=27% Similarity=0.355 Sum_probs=49.9
Q ss_pred eecCCCceEEEEEEeCCEEEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCCCCCCCceEEEEEEEEEEec
Q psy8087 524 LRRQGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEGKSAPGGHELKVDYWEVVGL 597 (658)
Q Consensus 524 ~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~El~~~~i~vls~ 597 (658)
....|+.++++.|.|++|.+.+++-.+.. .....+..|..|.|+|.+... .+..++.+.++..+..
T Consensus 13 ~tk~g~~~~~~~l~D~tg~i~~~~f~~~~--~~~~~l~~g~~v~v~G~v~~~------~~~~~l~~~~i~~l~~ 78 (83)
T cd04492 13 TAKNGKPYLALTLQDKTGEIEAKLWDASE--EDEEKFKPGDIVHVKGRVEEY------RGRLQLKIQRIRLVTE 78 (83)
T ss_pred cccCCCcEEEEEEEcCCCeEEEEEcCCCh--hhHhhCCCCCEEEEEEEEEEe------CCceeEEEEEEEECCc
Confidence 33446679999999999999999975332 234579999999999999542 3467888888876553
|
Both these proteins are 3'-to-5'exoribonucleases. YhaM requires Mn2+ or Co2+ for activity and is inactive in the presence of Mg2+. YhaM also has a Mn2+ dependent 3'-to-5'single-stranded DNA exonuclease activity. SaCBF is also a double-stranded DNA binding protein, binding specifically to cmp, the replication enhancer found in S. aureus plasmid pT181. Proteins in this group combine an N-terminal OB fold with a C-terminal HD domain. The HD domain is found in metal-dependent phosphohydrolases. |
| >cd04487 RecJ_OBF2_like RecJ_OBF2_like: A subfamily of OB folds corresponding to the second OB fold (OBF2) of archaeal-specific proteins with similarity to eubacterial RecJ | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.29 Score=40.77 Aligned_cols=67 Identities=13% Similarity=0.149 Sum_probs=49.1
Q ss_pred EEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccchhhhhhcCCCccEEEEEEEeEeCCCCccceEe
Q psy8087 73 INIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEENMKVQL 142 (658)
Q Consensus 73 v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~~~~~~~~l~~es~V~v~G~l~~~p~~~~d~~l 142 (658)
|.|.|-|.+.++.|+. .|+.|.|+.+.|.|++-+..... ....+..|+-|.|.|.+.. |.+.+.+.+
T Consensus 1 v~v~GeVs~~~~~~GH-vyfsLkD~~a~i~cv~f~~~~~~-~~~~l~~Gd~V~v~G~v~~-~~G~~ql~v 67 (73)
T cd04487 1 VHIEGEVVQIKQTSGP-TIFTLRDETGTVWAAAFEEAGVR-AYPEVEVGDIVRVTGEVEP-RDGQLQIEV 67 (73)
T ss_pred CEEEEEEeccccCCCC-EEEEEEcCCEEEEEEEEchhccC-CcCCCCCCCEEEEEEEEec-CCeEEEEEE
Confidence 4788988876655555 78899999999999886543211 1235889999999999986 776655554
|
RecJ is an ssDNA-specific exonuclease. Although the overall sequence similarity of these proteins to eubacterial RecJ proteins is marginal, they appear to carry motifs, which have been shown to be essential for nuclease function in Escherichia coli RecJ. In addition to this OB fold, most proteins in this subfamily contain: i) an N-terminal OB fold belonging to a different domain family (the ribosomal S1-like RNA-binding family); and ii) a domain, C-terminal to OBF2, characteristic of DHH family proteins. DHH family proteins include E. coli RecJ, and are predicted to have a phosphoesterase function. |
| >cd03524 RPA2_OBF_family RPA2_OBF_family: A family of oligonucleotide binding (OB) folds with similarity to the OB fold of the single strand (ss) DNA-binding domain (DBD)-D of human RPA2 (also called RPA32) | Back alignment and domain information |
|---|
Probab=94.24 E-value=0.42 Score=38.04 Aligned_cols=69 Identities=29% Similarity=0.404 Sum_probs=50.9
Q ss_pred EEEEEEeeecCC--CceEEEEEEeCC-EEEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCCCCCCCceEEEEEEE
Q psy8087 517 IFGWVHRLRRQG--KGLMFVTLRDGS-GFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEGKSAPGGHELKVDYW 592 (658)
Q Consensus 517 v~GwI~~~R~~G--kkl~Fi~Lrd~~-~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~El~~~~i 592 (658)
+.|.|.+++... +..+++.|.|.+ +.+.|++-.+... .....+..|+.|.|+|.+... .+...+.+.++
T Consensus 2 v~g~v~~~~~~~~~~~~~~~~l~D~~~~~i~~~~~~~~~~-~~~~~~~~g~~v~v~g~v~~~------~~~~~l~~~~~ 73 (75)
T cd03524 2 IVGIVVAVEEIRTEGKVLIFTLTDGTGGTIRVTLFGELAE-ELENLLKEGQVVYIKGKVKKF------RGRLQLIVESI 73 (75)
T ss_pred eEEEEEeecccccCCeEEEEEEEcCCCCEEEEEEEchHHH-HHHhhccCCCEEEEEEEEEec------CCeEEEEeeee
Confidence 678888886654 579999999999 9999998764221 223468999999999999642 25566766544
|
RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). RPA contains six OB folds, which are involved in ssDNA binding and in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. This family also includes OB folds similar to those found in Escherichia coli SSB, the wedge domain of E. coli RecG (a branched-DNA-specific helicase), E. coli ssDNA specific exodeoxyribonuclease VII large subunit, Pyroco |
| >PF04076 BOF: Bacterial OB fold (BOF) protein; InterPro: IPR005220 Proteins in this entry have an OB-fold fold (oligonucleotide/oligosaccharide binding motif) | Back alignment and domain information |
|---|
Probab=93.70 E-value=0.8 Score=40.82 Aligned_cols=72 Identities=24% Similarity=0.297 Sum_probs=48.8
Q ss_pred ccCCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCCCCCCCceEEE
Q psy8087 509 KYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEGKSAPGGHELK 588 (658)
Q Consensus 509 ~~~g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~El~ 588 (658)
...+..|+|.|.|.+.-..-+ +.++|.+|.|+|-++.+. +. -..+++++-|.|.|.+-+.- ...+|.
T Consensus 31 ~~Dd~~V~L~G~Iv~~l~~d~----Y~F~D~TG~I~VeId~~~--w~-g~~vt~~~~Vri~GeVDk~~------~~~~Id 97 (103)
T PF04076_consen 31 AKDDTPVTLEGNIVKQLGDDK----YLFRDATGEIEVEIDDDV--WR-GQTVTPDDKVRISGEVDKDW------NKTEID 97 (103)
T ss_dssp S-SSEEEEEEEEEEEEEETTE----EEEEETTEEEEEE--GGG--ST-T----TTSEEEEEEEEEEET------TEEEEE
T ss_pred CcCCCeEEEEEEEEEEecCCE----EEEECCCCcEEEEEChhh--cC-CcccCCCCEEEEEEEEeCCC------CceEEE
Confidence 356789999999877644432 789999999999987542 11 23589999999999996432 457888
Q ss_pred EEEEE
Q psy8087 589 VDYWE 593 (658)
Q Consensus 589 ~~~i~ 593 (658)
|+.|+
T Consensus 98 V~~I~ 102 (103)
T PF04076_consen 98 VDRIE 102 (103)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 88775
|
Analysis of the predicted nucleotide-binding site of the OB-fold suggests that they lack nucleic acid-binding properties. They contain an predicted N-terminal signal peptide which indicates that they localise to the periplasm where they may function to bind proteins, small molecules, or other typical OB-fold ligands. As hypothesised for the distantly related OB-fold containing bacterial enterotoxins, the loss of nucleotide-binding function and the rapid evolution of the OB-fold ligand-binding site may be associated with the presence of members in mobile genetic elements and their potential role in bacterial pathogenicity [].; PDB: 1NNX_A. |
| >PRK07373 DNA polymerase III subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=93.63 E-value=0.3 Score=54.75 Aligned_cols=78 Identities=18% Similarity=0.303 Sum_probs=59.6
Q ss_pred CCcEEEEEEEEEeeec----CCCceEEEEEEeCCEEEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCCCCCCCceE
Q psy8087 511 RDKRVTIFGWVHRLRR----QGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEGKSAPGGHE 586 (658)
Q Consensus 511 ~g~~V~v~GwI~~~R~----~Gkkl~Fi~Lrd~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~E 586 (658)
.|+.|+|+|.|.++|. .|+.++|++|-|.+|.+.+++..+... .....|..+.+|.|+|.+... .+.+.
T Consensus 279 ~~~~v~vaG~I~~ik~~~TKkG~~maf~~leD~tG~ie~vvFp~~y~-~~~~~l~~~~~v~v~G~v~~~------~~~~~ 351 (449)
T PRK07373 279 EKTKVSAVVMLNEVKKIVTKKGDPMAFLQLEDLSGQSEAVVFPKSYE-RISELLQVDARLIIWGKVDRR------DDQVQ 351 (449)
T ss_pred CCCEEEEEEEEEEeEecccCCCCEEEEEEEEECCCCEEEEECHHHHH-HHHHHhccCCEEEEEEEEEec------CCeEE
Confidence 4788999999999864 355699999999999999999864321 233468999999999999642 24567
Q ss_pred EEEEEEEEE
Q psy8087 587 LKVDYWEVV 595 (658)
Q Consensus 587 l~~~~i~vl 595 (658)
+.++++.-+
T Consensus 352 liv~~i~~l 360 (449)
T PRK07373 352 LIVEDAEPI 360 (449)
T ss_pred EEEeEeecH
Confidence 777776544
|
|
| >COG4085 Predicted RNA-binding protein, contains TRAM domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.57 E-value=0.43 Score=46.63 Aligned_cols=74 Identities=26% Similarity=0.330 Sum_probs=56.2
Q ss_pred ecccCCccCCcEEEEEEEEEeee-cCCCceEEEEEEeCCEEEEEEEcCCccchHHh----ccCCCCcEEEEEEEEEecC
Q psy8087 503 KIKDGEKYRDKRVTIFGWVHRLR-RQGKGLMFVTLRDGSGFIQCVLADILCQTEHA----LLLSTESSVQFRGRIEKVP 576 (658)
Q Consensus 503 ~i~~~~~~~g~~V~v~GwI~~~R-~~Gkkl~Fi~Lrd~~~~iQvv~~~~~~~~~~~----~~L~~gs~V~V~G~v~~~~ 576 (658)
.++.......+.|+|.|-|.+.+ ..|.++.|+.|.|++|+|-++++.+...+-.. --+..|++|.|+|.+..-+
T Consensus 42 ~i~eg~G~l~e~v~vkg~V~~~~n~~~~gi~~l~lndgtGti~vva~~~tee~l~~n~~~p~~~eGe~veVtGrv~~yr 120 (204)
T COG4085 42 TINEGDGRLNEEVTVKGEVTADQNAIGGGIESLVLNDGTGTITVVASRSTEETLELNEGMPVTVEGEIVEVTGRVEEYR 120 (204)
T ss_pred EEecCCceeeccceeeeEEEeeecccccceEEEEEECCCCcEEEEEecChhHhHhhcCCCCccccCcEEEEEEEEEEeC
Confidence 34444555677899999999998 56668999999999999999998764433111 1367999999999986644
|
|
| >PF10451 Stn1: Telomere regulation protein Stn1; InterPro: IPR018856 The budding yeast protein Stn1 is a DNA-binding protein which has specificity for telomeric DNA | Back alignment and domain information |
|---|
Probab=93.55 E-value=0.42 Score=49.60 Aligned_cols=76 Identities=22% Similarity=0.257 Sum_probs=55.2
Q ss_pred CcEEEEEEEEEeeecC----CCceEEEEEEeCCE--EEEEEEcCCccc--hHHhccCCCCcEEEEEEEEEecCCCCCCCC
Q psy8087 512 DKRVTIFGWVHRLRRQ----GKGLMFVTLRDGSG--FIQCVLADILCQ--TEHALLLSTESSVQFRGRIEKVPEGKSAPG 583 (658)
Q Consensus 512 g~~V~v~GwI~~~R~~----Gkkl~Fi~Lrd~~~--~iQvv~~~~~~~--~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g 583 (658)
=+.|+|.|.|..+... . +-+|+.|-|++| .|.|++..+... ...+..+ .|++|.|+|++. .+
T Consensus 66 I~~v~i~G~Vv~~~~~~~~~~-~~~~l~iDD~Sg~~~i~~~~~~~~~~~~~l~~~~~-~G~~V~VkG~vs--------r~ 135 (256)
T PF10451_consen 66 IRWVRIVGVVVGIDYKWIENE-DRIILTIDDSSGANTIECKCSKSSYLSMGLPINDL-IGKVVEVKGTVS--------RN 135 (256)
T ss_dssp E-EEEEEEEEEEEEEEE-BBT-CEEEEEEE-SSCS-EEEEEEEHHHHHCCCHHCTT--TT-EEEEEEEEE--------SS
T ss_pred cEEEEEEEEEEEEEEEeeccc-ceEEEEEeCCCCceeEEEEEEcccccccCCCccCC-CCcEEEEEEEEc--------cC
Confidence 3578999999988644 3 588999999999 899999854211 1223445 999999999995 46
Q ss_pred ceEEEEEEEEEEec
Q psy8087 584 GHELKVDYWEVVGL 597 (658)
Q Consensus 584 ~~El~~~~i~vls~ 597 (658)
..+|.++.+.++..
T Consensus 136 ~~ql~ve~i~~~~~ 149 (256)
T PF10451_consen 136 ERQLDVERIELVRD 149 (256)
T ss_dssp SEEEEEEEEEEETS
T ss_pred cEEEEEEEEEccCC
Confidence 78999999997754
|
Structural profiling has predicted an OB-fold []. This entry represents the N-terminal part of the molecule, which adopts the OB fold. Protection of telomeres by multiple proteins with OB-fold domains is conserved in eukaryotic evolution [].; PDB: 3KF6_A 3KF8_A. |
| >PF13742 tRNA_anti_2: OB-fold nucleic acid binding domain | Back alignment and domain information |
|---|
Probab=93.50 E-value=0.31 Score=43.05 Aligned_cols=72 Identities=19% Similarity=0.300 Sum_probs=53.6
Q ss_pred cEEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccchhhhhhcCCCccEEEEEEEeEeC-CCCccceEe
Q psy8087 71 TNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKV-PEENMKVQL 142 (658)
Q Consensus 71 ~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~~~~~~~~l~~es~V~v~G~l~~~-p~~~~d~~l 142 (658)
..|+|.|-|.+.+.+.++-+|++|.|+...|+|++-...........++.|+-|.|.|.+.-= +.|.+.+.+
T Consensus 22 ~~vwV~GEIs~~~~~~~gh~YftLkD~~a~i~~~~~~~~~~~i~~~~l~~G~~V~v~g~~~~y~~~G~~sl~v 94 (99)
T PF13742_consen 22 PNVWVEGEISNLKRHSSGHVYFTLKDEEASISCVIFRSRARRIRGFDLKDGDKVLVRGRVSFYEPRGSLSLIV 94 (99)
T ss_pred CCEEEEEEEeecEECCCceEEEEEEcCCcEEEEEEEHHHHhhCCCCCCCCCCEEEEEEEEEEECCCcEEEEEE
Confidence 679999999999996666799999999999999987653211111358999999999999753 344344443
|
|
| >COG3111 Periplasmic protein with OB-fold [Function unknown] | Back alignment and domain information |
|---|
Probab=93.34 E-value=0.59 Score=42.50 Aligned_cols=84 Identities=20% Similarity=0.227 Sum_probs=59.3
Q ss_pred cceeeccc-CCccCCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCC
Q psy8087 499 AVRIKIKD-GEKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPE 577 (658)
Q Consensus 499 ~~~~~i~~-~~~~~g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~ 577 (658)
++...+.+ ...+.+..|++.|-|.+.-..- =+..||.+|.|+|.++...-. -..+++.|-|.+.|.+-+.
T Consensus 43 ~~~~TV~~Ak~~~Dda~V~l~GnIv~qi~~D----~y~FrD~sGeI~VeIdd~~w~---g~tv~P~dkV~I~GevDk~-- 113 (128)
T COG3111 43 AKVTTVDQAKTLHDDAWVSLEGNIVRQIGDD----RYVFRDASGEINVDIDDKVWN---GQTVTPKDKVRIQGEVDKD-- 113 (128)
T ss_pred cceeEHHHhhccccCCeEEEEeeEEEeeCCc----eEEEEcCCccEEEEecccccC---CcccCcccEEEEEeEEcCC--
Confidence 33444443 3556789999999997653332 268899999999999864211 1359999999999999431
Q ss_pred CCCCCCceEEEEEEEEEE
Q psy8087 578 GKSAPGGHELKVDYWEVV 595 (658)
Q Consensus 578 ~~~~~g~~El~~~~i~vl 595 (658)
-...||.|+.|+.+
T Consensus 114 ----~~~~eIdV~~I~k~ 127 (128)
T COG3111 114 ----WNSVEIDVKHIEKL 127 (128)
T ss_pred ----CccceeEhhheEec
Confidence 24578888888764
|
|
| >COG4085 Predicted RNA-binding protein, contains TRAM domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.24 E-value=0.44 Score=46.60 Aligned_cols=80 Identities=20% Similarity=0.272 Sum_probs=61.3
Q ss_pred CCccCCcEEEEeEEeecce-ecCCCeEEEEEEcCCeEEEEEEecccchhhh----hhcCCCccEEEEEEEeEeCCCCccc
Q psy8087 65 PAGYIITNINIPAIPGPPA-IPGKGLMFVTLRDGSGFIQCVLADILCQTEH----ALLLSTESSVQFRGRIEKVPEENMK 139 (658)
Q Consensus 65 ~~~~~~~~v~~~Grv~~~r-~~gk~l~Fi~LrD~~~~iQvv~~~~~~~~~~----~~~l~~es~V~v~G~l~~~p~~~~d 139 (658)
..+...+.|+|.|-|.+.+ ++|.++.|+.|.|++|.|-+++..+.-+... .--+..|.+|.|+|.+..-+.. .+
T Consensus 46 g~G~l~e~v~vkg~V~~~~n~~~~gi~~l~lndgtGti~vva~~~tee~l~~n~~~p~~~eGe~veVtGrv~~yrG~-~e 124 (204)
T COG4085 46 GDGRLNEEVTVKGEVTADQNAIGGGIESLVLNDGTGTITVVASRSTEETLELNEGMPVTVEGEIVEVTGRVEEYRGS-SE 124 (204)
T ss_pred CCceeeccceeeeEEEeeecccccceEEEEEECCCCcEEEEEecChhHhHhhcCCCCccccCcEEEEEEEEEEeCCC-ce
Confidence 4556778899999999988 7888899999999999999988876422111 1135689999999999876554 56
Q ss_pred eEecCC
Q psy8087 140 VQLIHP 145 (658)
Q Consensus 140 ~~l~~p 145 (658)
+++++|
T Consensus 125 Vkvnq~ 130 (204)
T COG4085 125 VKVNQP 130 (204)
T ss_pred eeccCc
Confidence 666653
|
|
| >cd04479 RPA3 RPA3: A subfamily of OB folds similar to human RPA3 (also called RPA14) | Back alignment and domain information |
|---|
Probab=93.16 E-value=0.73 Score=40.87 Aligned_cols=70 Identities=21% Similarity=0.258 Sum_probs=52.1
Q ss_pred CCccCCcEEEEEEEEEeeecCCCceEEEEEEeCCE-EEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCCCCCCCce
Q psy8087 507 GEKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSG-FIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEGKSAPGGH 585 (658)
Q Consensus 507 ~~~~~g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~-~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~ 585 (658)
+..+.|+.|++-|+|.+.+... +.+.+..| .++|.++... .+..+-.|.|.|++ .+..
T Consensus 10 L~~f~gk~V~ivGkV~~~~~~~-----~~~~~~Dg~~v~v~l~~~~-------~~~~~~~vEViG~V---------~~~~ 68 (101)
T cd04479 10 LSQFVGKTVRIVGKVEKVDGDS-----LTLISSDGVNVTVELNRPL-------DLPISGYVEVIGKV---------SPDL 68 (101)
T ss_pred HHhhCCCEEEEEEEEEEecCCe-----EEEEcCCCCEEEEEeCCCC-------CcccCCEEEEEEEE---------CCCC
Confidence 3567899999999999998652 45555554 8999988643 36778899999999 3456
Q ss_pred EEEEEEEEEEec
Q psy8087 586 ELKVDYWEVVGL 597 (658)
Q Consensus 586 El~~~~i~vls~ 597 (658)
+|.+..+.-++.
T Consensus 69 ~I~~~~~~~~g~ 80 (101)
T cd04479 69 TIRVLSYIDFGD 80 (101)
T ss_pred eEEEEEEEECCC
Confidence 788777765543
|
RPA3 is the smallest subunit of Replication protein A (RPA). RPA is a nuclear ssDNA binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). RPA3 is believed to have a structural role in assembly of the RPA heterotrimer. |
| >cd04478 RPA2_DBD_D RPA2_DBD_D: A subfamily of OB folds corresponding to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32) | Back alignment and domain information |
|---|
Probab=93.09 E-value=0.34 Score=42.00 Aligned_cols=62 Identities=11% Similarity=0.137 Sum_probs=47.4
Q ss_pred EEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccch--hhhhhcCCCccEEEEEEEeEeCCC
Q psy8087 73 INIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILCQ--TEHALLLSTESSVQFRGRIEKVPE 135 (658)
Q Consensus 73 v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~~--~~~~~~l~~es~V~v~G~l~~~p~ 135 (658)
|++.|+|.++...+..+.| .|.|++|.|-+..-..... ......+..|+.|.|.|.++.-..
T Consensus 2 v~~vG~V~~~~~~~~~~~~-tL~D~TG~I~~~~W~~~~~~~~~~~~~~~~g~~v~v~G~v~~~~g 65 (95)
T cd04478 2 VTLVGVVRNVEEQSTNITY-TIDDGTGTIEVRQWLDDDNDDSSEVEPIEEGTYVRVFGNLKSFQG 65 (95)
T ss_pred EEEEEEEEeeeEcccEEEE-EEECCCCcEEEEEeCCCCCcccccccccccCCEEEEEEEEcccCC
Confidence 7899999999988776555 9999999998877543321 012346889999999999986543
|
RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B; RPA2 DBD-D is a weak ssDNA-binding domain. RPA2 DBD-D is also involved in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. N-terminal to human RPA2 DBD-D is a domain containing all the known phosphorylation sites of RPA. Human RPA2 is phosphorylated in a cell cycle dependent manner in response to DNA dam |
| >PRK00960 seryl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=93.00 E-value=0.12 Score=58.60 Aligned_cols=47 Identities=15% Similarity=0.178 Sum_probs=36.5
Q ss_pred cEEE-EeeeeecCCCC--CccCcceeeeeeeEeecCCHHHHHHHHHHHHHH
Q psy8087 219 DVYC-IAQSYRAENSR--TRRHLAEYTHVEAECAFLTFDDLLDKLEDLICD 266 (658)
Q Consensus 219 rvfe-I~~~FR~E~~~--~~rHl~EFt~lE~e~a~~d~~~~m~~~e~li~~ 266 (658)
|+|+ .|+|||+|... .-.=.-||+|.|+. .|++.+++.+..++++.+
T Consensus 337 rl~e~sG~cFR~EsGs~~GL~RV~eF~kvE~h-~f~tpEqs~ee~e~ll~~ 386 (517)
T PRK00960 337 KFFDRSGWTYRWEGGGAHGLERVNEFHRIEIV-WLGTPEQVEEIRDELLKY 386 (517)
T ss_pred HHhhccCCceeCCCCCCCCCcccceeEEEEEE-EEeCHHHHHHHHHHHHHH
Confidence 7999 56999999521 11113499999999 889999999999999844
|
|
| >TIGR00415 serS_MJ seryl-tRNA synthetase, Methanococcus jannaschii family | Back alignment and domain information |
|---|
Probab=92.90 E-value=0.43 Score=53.81 Aligned_cols=68 Identities=9% Similarity=0.017 Sum_probs=49.4
Q ss_pred ceeeccCHHHHHHHhccc-------C-CcEEEEe-eeeecCCCCC--ccCcceeeeeeeEeecCCHHHHHHHHHHHHHHH
Q psy8087 199 PAYLTQSSQLYLETCLPA-------L-GDVYCIA-QSYRAENSRT--RRHLAEYTHVEAECAFLTFDDLLDKLEDLICDT 267 (658)
Q Consensus 199 ~~~L~~Spqlylk~li~g-------~-~rvfeI~-~~FR~E~~~~--~rHl~EFt~lE~e~a~~d~~~~m~~~e~li~~i 267 (658)
.++|+-+.+..+=.+..+ + -++|++. +|||.|...+ -.=.-||+|.|+-. +++.++..+..++++...
T Consensus 309 ~~vL~PTSE~ply~~~a~~Ils~~dLPlk~~~~s~~CFR~EaGstrGL~RvhEF~kvE~v~-~~tpEea~e~~e~mle~~ 387 (520)
T TIGR00415 309 GYVIAPAQCEPFYQFFEGEVIDAEDKPIKFFDRSGWTYRWEAGGAKGLDRVHEFLRVECVW-IAEPEETEEIRDKTLELA 387 (520)
T ss_pred ceEEeCccHHHHHHHHhccccChhhCCeeEEEEecCeEeCCCCCCCCCceeeEEEEEEEEE-EeCHHHHHHHHHHHHHHH
Confidence 577888888766433321 2 4689955 7999998432 11234999999999 899999999999988644
|
The seryl-tRNA synthetases from a few of the Archaea, represented by this model, are very different from the set of mutually more closely related seryl-tRNA synthetases from Eubacteria, Eukaryotes, and other Archaea. Although distantly homologous, the present set differs enough not to be recognized by the pfam model tRNA-synt_2b that recognizes the remainder of seryl-tRNA synthetases among oither class II amino-acyl tRNA synthetases. |
| >cd04490 PolII_SU_OBF PolII_SU_OBF: A subfamily of OB folds corresponding to the OB fold found in Pyrococcus abyssi DNA polymerase II (PolII) small subunit | Back alignment and domain information |
|---|
Probab=92.64 E-value=1.6 Score=36.91 Aligned_cols=58 Identities=24% Similarity=0.317 Sum_probs=44.7
Q ss_pred EEEEEEEEeeecCCC-ceEEEEEEeCCEEEEEEEcCCccc-hHHhccCCCCcEEEEEEEEE
Q psy8087 515 VTIFGWVHRLRRQGK-GLMFVTLRDGSGFIQCVLADILCQ-TEHALLLSTESSVQFRGRIE 573 (658)
Q Consensus 515 V~v~GwI~~~R~~Gk-kl~Fi~Lrd~~~~iQvv~~~~~~~-~~~~~~L~~gs~V~V~G~v~ 573 (658)
|.++|-|.++|...+ +- |+.|-|.+|.+.|++.++... +.....|..+.+|.|+|.+.
T Consensus 2 v~i~GiI~~v~~TK~g~~-~~~leD~~G~~Ev~~F~~~~~~~~~~~~l~~d~~v~v~g~v~ 61 (79)
T cd04490 2 VSIIGMVNDVRSTKNGHR-IVELEDTTGRITVLLTKDKEELFEEAEDILPDEVIGVSGTVS 61 (79)
T ss_pred EEEEEEEeEEEEcCCCCE-EEEEECCCCEEEEEEeCchhhhhhhhhhccCCCEEEEEEEEe
Confidence 678899988872211 34 999999999999999876443 13445689999999999994
|
PolII is a family D DNA polymerase, having a 3-prime to 5-prime exonuclease activity. P. abyssi PolII is heterodimeric. The large subunit appears to be the polymerase, and the small subunit may be the exonuclease. The small subunit contains a calcineurin-like phosphatase superfamily domain C-terminal to this OB-fold domain. |
| >cd03524 RPA2_OBF_family RPA2_OBF_family: A family of oligonucleotide binding (OB) folds with similarity to the OB fold of the single strand (ss) DNA-binding domain (DBD)-D of human RPA2 (also called RPA32) | Back alignment and domain information |
|---|
Probab=92.16 E-value=0.62 Score=37.02 Aligned_cols=58 Identities=26% Similarity=0.314 Sum_probs=44.6
Q ss_pred EeEEeecceecC--CCeEEEEEEcCC-eEEEEEEecccchhhhhhcCCCccEEEEEEEeEeC
Q psy8087 75 IPAIPGPPAIPG--KGLMFVTLRDGS-GFIQCVLADILCQTEHALLLSTESSVQFRGRIEKV 133 (658)
Q Consensus 75 ~~Grv~~~r~~g--k~l~Fi~LrD~~-~~iQvv~~~~~~~~~~~~~l~~es~V~v~G~l~~~ 133 (658)
+.|.|..++... +..+++.|.|.+ +.+.+++-.+....+ ...+..|+.|.+.|.+...
T Consensus 2 v~g~v~~~~~~~~~~~~~~~~l~D~~~~~i~~~~~~~~~~~~-~~~~~~g~~v~v~g~v~~~ 62 (75)
T cd03524 2 IVGIVVAVEEIRTEGKVLIFTLTDGTGGTIRVTLFGELAEEL-ENLLKEGQVVYIKGKVKKF 62 (75)
T ss_pred eEEEEEeecccccCCeEEEEEEEcCCCCEEEEEEEchHHHHH-HhhccCCCEEEEEEEEEec
Confidence 567777776654 578999999999 999999877543222 1358899999999999764
|
RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). RPA contains six OB folds, which are involved in ssDNA binding and in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. This family also includes OB folds similar to those found in Escherichia coli SSB, the wedge domain of E. coli RecG (a branched-DNA-specific helicase), E. coli ssDNA specific exodeoxyribonuclease VII large subunit, Pyroco |
| >COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=91.94 E-value=0.33 Score=53.73 Aligned_cols=104 Identities=19% Similarity=0.359 Sum_probs=66.1
Q ss_pred chHHHhhhCCcEEEcCCccccccC-CCCcc--ceeeccC---CcceeeccCHHHHHHHhccc-------C-CcEEEEeee
Q psy8087 161 YPPEVSLANGIAKVTPPTLVQTQV-EGGST--LFSLNFF---GEPAYLTQSSQLYLETCLPA-------L-GDVYCIAQS 226 (658)
Q Consensus 161 ~iR~fl~~~gF~EV~TPiL~~~~~-eG~~~--~F~~~~~---~~~~~L~~Spqlylk~li~g-------~-~rvfeI~~~ 226 (658)
.+=++..++||.|+.+|.|+.... -|.+. -|.=+.| +.++||.-..|.-+=-+..+ + -+++-.++|
T Consensus 183 f~ld~~~~~Gf~e~~~P~lv~~e~m~gtgqlpkf~e~~y~v~~~~~~LipTaEvpl~~l~~~Eil~~~~LP~k~~~~S~c 262 (429)
T COG0172 183 FMLDLHTKHGFTEVLPPYLVNLESMFGTGQLPKFEEDLYKVEDPDLYLIPTAEVPLTNLHRDEILDEEDLPIKYTAYSPC 262 (429)
T ss_pred HHHHHHHHcCceEeeCceeecHHHhhccCCCCCCcccceEecCCCEEEEecchhhhHHhhcccccccccCCeeeEEEChh
Confidence 334445578999999999975432 22221 1222222 22688887777665544432 2 357778999
Q ss_pred eecCCCCC--------ccCcceeeeeeeEeecCCHHHHHHHHHHHHHHH
Q psy8087 227 YRAENSRT--------RRHLAEYTHVEAECAFLTFDDLLDKLEDLICDT 267 (658)
Q Consensus 227 FR~E~~~~--------~rHl~EFt~lE~e~a~~d~~~~m~~~e~li~~i 267 (658)
||-|.... +.| +|.++|.-. |+..++-.+..|+|+...
T Consensus 263 FR~EAGs~GrdtrGliRvH--QF~KVE~v~-~~~Pe~S~~~~E~m~~~a 308 (429)
T COG0172 263 FRSEAGSAGKDTRGLIRVH--QFDKVELVV-ITKPEESEEELEEMLGNA 308 (429)
T ss_pred hhcccccccccccceeeee--eeeeEEEEE-EeCcchhHHHHHHHHHHH
Confidence 99996532 235 999999744 567777777777777654
|
|
| >PRK09616 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=91.92 E-value=0.73 Score=53.29 Aligned_cols=105 Identities=14% Similarity=0.123 Sum_probs=68.0
Q ss_pred CchHHHhhhCCcEEEcCCccccccC--C----CCc-cceee-ccCC-cceeeccC--HHHHHHHhc--ccC--CcEEEEe
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV--E----GGS-TLFSL-NFFG-EPAYLTQS--SQLYLETCL--PAL--GDVYCIA 224 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~--e----G~~-~~F~~-~~~~-~~~~L~~S--pqlylk~li--~g~--~rvfeI~ 224 (658)
..+|++|...||.|+-|..|+.... + ... .+..+ |-.. ...+||.| |.|..-..- .+. -|+||||
T Consensus 366 ~~ir~~L~~~Gf~Ev~tys~~s~~~~~~~~~~~~~~~~i~l~NPls~e~svLRtsLlpgLL~~~~~N~~~~~~~~lFEiG 445 (552)
T PRK09616 366 RAIRDLMVGLGFQEVMNFTLTSEEVLFEKMNLEPEEDYVEVLNPISEDYTVVRTSLLPSLLEFLSNNKHREYPQKIFEIG 445 (552)
T ss_pred HHHHHHHHhCCcceeccceEechHHHHHHhCCCCCCCeEEEcCCCccchheEeccchHHHHHHHHhccCCCCCeeEEEee
Confidence 4789999999999999999964311 0 000 11221 2222 23467765 444433221 122 3799999
Q ss_pred eeeecCCCCCccCcceeeeeeeEeecC--CHHHHHHHHHHHHH
Q psy8087 225 QSYRAENSRTRRHLAEYTHVEAECAFL--TFDDLLDKLEDLIC 265 (658)
Q Consensus 225 ~~FR~E~~~~~rHl~EFt~lE~e~a~~--d~~~~m~~~e~li~ 265 (658)
+||+++..+ ..|..|++++-+-++.. |+.++...+|.|+.
T Consensus 446 ~Vf~~~~~~-~~~~~e~~~l~~~~~g~~~df~dlKg~ve~ll~ 487 (552)
T PRK09616 446 DVVLIDEST-ETGTRTERKLAAAIAHSEASFTEIKSVVQALLR 487 (552)
T ss_pred EEEecCCcc-ccCcchhhEEEEEEECCCCCHHHHHHHHHHHHH
Confidence 999987632 25777999999888774 78888888888775
|
|
| >cd04482 RPA2_OBF_like RPA2_OBF_like: A subgroup of uncharacterized archaeal OB folds with similarity to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32) | Back alignment and domain information |
|---|
Probab=91.49 E-value=0.9 Score=39.48 Aligned_cols=61 Identities=18% Similarity=0.249 Sum_probs=45.2
Q ss_pred EEEeEEeecceec--CCCeEEEEEEcCCeEEEEEEecccchh-hhhhcCCCccEEEEEEEeEeCC
Q psy8087 73 INIPAIPGPPAIP--GKGLMFVTLRDGSGFIQCVLADILCQT-EHALLLSTESSVQFRGRIEKVP 134 (658)
Q Consensus 73 v~~~Grv~~~r~~--gk~l~Fi~LrD~~~~iQvv~~~~~~~~-~~~~~l~~es~V~v~G~l~~~p 134 (658)
++|.|-|.+.+++ |+. +|+.|.|+++.|.+++-+..... .....+..||-|.|.|.+..-+
T Consensus 1 ~~v~GeVs~~~~~~~sGH-~yFtlkD~~~~i~cv~f~~~g~~~~~~~~l~~Gd~V~v~G~v~~y~ 64 (91)
T cd04482 1 YRVTGKVVEEPRTIEGGH-VFFKISDGTGEIDCAAYEPTKEFRDVVRLLIPGDEVTVYGSVRPGT 64 (91)
T ss_pred CEEEEEEeCCeecCCCCC-EEEEEECCCcEEEEEEECcccccccccCCCCCCCEEEEEEEEecCC
Confidence 3689999988764 544 78899999999999876543110 1123689999999999997644
|
RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B; RPA2 DBD-D is a weak ssDNA-binding domain. RPA2 DBD-D is also involved in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. N-terminal to human RPA2 DBD-D is a domain containing all the known phosphorylation sites of RPA. Human RPA2 is phosphorylated in a cell cycle depende |
| >PRK06826 dnaE DNA polymerase III DnaE; Reviewed | Back alignment and domain information |
|---|
Probab=91.46 E-value=0.7 Score=57.59 Aligned_cols=80 Identities=20% Similarity=0.291 Sum_probs=60.7
Q ss_pred CCcEEEEEEEEEeeec----CCCceEEEEEEeCCEEEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCCCCCCCceE
Q psy8087 511 RDKRVTIFGWVHRLRR----QGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEGKSAPGGHE 586 (658)
Q Consensus 511 ~g~~V~v~GwI~~~R~----~Gkkl~Fi~Lrd~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~E 586 (658)
.|+.|+|+|.|.++|. .|+.++|++|.|.+|.+.+++..+... .....|..|.+|.|+|.+.... .+.+.
T Consensus 990 ~~~~v~v~g~i~~~~~~~tk~G~~maf~~leD~~g~~e~~vfp~~~~-~~~~~l~~~~~~~v~g~v~~~~-----~~~~~ 1063 (1151)
T PRK06826 990 DGDKVIIGGIITEVKRKTTRNNEMMAFLTLEDLYGTVEVIVFPKVYE-KYRSLLNEDNIVLIKGRVSLRE-----DEEPK 1063 (1151)
T ss_pred CCcEEEEEEEEEEeEeeccCCCCeEEEEEEEECCCcEEEEECHHHHH-HHHHHhccCCEEEEEEEEEecC-----CCceE
Confidence 4778999999999864 344599999999999999999864321 2334689999999999996432 24577
Q ss_pred EEEEEEEEEe
Q psy8087 587 LKVDYWEVVG 596 (658)
Q Consensus 587 l~~~~i~vls 596 (658)
+.++.+.-+.
T Consensus 1064 ~~~~~~~~l~ 1073 (1151)
T PRK06826 1064 LICEEIEPLV 1073 (1151)
T ss_pred EEEeeeecHh
Confidence 8887776554
|
|
| >PRK12294 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional | Back alignment and domain information |
|---|
Probab=91.33 E-value=0.92 Score=47.61 Aligned_cols=89 Identities=11% Similarity=-0.076 Sum_probs=56.3
Q ss_pred CchHHHhhhCCcEEEcCCccccccC--CCCc----cce-ee-ccCCcceeecc--CHHHHHHHhcc----cCCcEEEEee
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV--EGGS----TLF-SL-NFFGEPAYLTQ--SSQLYLETCLP----ALGDVYCIAQ 225 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~--eG~~----~~F-~~-~~~~~~~~L~~--Spqlylk~li~----g~~rvfeI~~ 225 (658)
..+++.|...||-||+||++-.... .++. ..+ .+ +.-|+.+.||- .|++-. +++ +..|.|.+|+
T Consensus 15 ~~l~~~f~~~GY~~I~tP~~E~~d~~~~~~~~~~~~~~~~~~~~~Gr~laLRpD~T~~iAR--~~a~~~~~~~Rl~Y~g~ 92 (272)
T PRK12294 15 TAFLKYFNKADYELVDFSVIEKLDWKQLNHEDLQQMGERSFWQHEHQIYALRNDFTDQLLR--YYSMYPTAATKVAYAGL 92 (272)
T ss_pred HHHHHHHHHcCCeEeeCCcchhHHhhhccccchhhhheeeeecCCCCEEEEcCCCCHHHHH--HHHhcCCCCceEEEecc
Confidence 4789999999999999999943221 1111 112 12 22367778872 333333 222 3459999999
Q ss_pred eeecCCCCCccCcceeeeeeeEeecCCHHHHHH
Q psy8087 226 SYRAENSRTRRHLAEYTHVEAECAFLTFDDLLD 258 (658)
Q Consensus 226 ~FR~E~~~~~rHl~EFt~lE~e~a~~d~~~~m~ 258 (658)
+||++. +|+|+-+|.-..+.....+
T Consensus 93 VfR~~~--------~~~Q~GvEliG~~~~a~~e 117 (272)
T PRK12294 93 IIRNNE--------AAVQVGIENYAPSLANVQQ 117 (272)
T ss_pred EeccCC--------CcceeceEEECCCchhHHH
Confidence 999863 4899999987644333333
|
|
| >TIGR00156 conserved hypothetical protein TIGR00156 | Back alignment and domain information |
|---|
Probab=91.32 E-value=1.6 Score=40.23 Aligned_cols=71 Identities=20% Similarity=0.216 Sum_probs=53.1
Q ss_pred ccCCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCccchHHh-ccCCCCcEEEEEEEEEecCCCCCCCCceEE
Q psy8087 509 KYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILCQTEHA-LLLSTESSVQFRGRIEKVPEGKSAPGGHEL 587 (658)
Q Consensus 509 ~~~g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~~~~~~~-~~L~~gs~V~V~G~v~~~~~~~~~~g~~El 587 (658)
...+..|++.|.|.+.-..-. +.++|++|.|+|-++.+ .|. ..++++|-|.|.|.|-+. -+..||
T Consensus 54 ~~Ddt~V~L~G~Iv~~l~~d~----Y~F~D~TG~I~VeId~~----~w~G~~v~p~d~V~I~GeVDk~------~~~~~I 119 (126)
T TIGR00156 54 MHDGASVTLRGNIISHIGDDR----YVFRDKSGEINVVIPAA----VWNGREVQPKDMVNISGSLDKK------SAPAEV 119 (126)
T ss_pred CCCCCEEEEEEEEEEEeCCce----EEEECCCCCEEEEECHH----HcCCCcCCCCCEEEEEEEECCC------CCCeEE
Confidence 456889999999987654432 78999999999998753 222 258999999999999421 234678
Q ss_pred EEEEEE
Q psy8087 588 KVDYWE 593 (658)
Q Consensus 588 ~~~~i~ 593 (658)
.|+.|+
T Consensus 120 dV~~I~ 125 (126)
T TIGR00156 120 DVTHIQ 125 (126)
T ss_pred EEEEEE
Confidence 887775
|
As of the last revision, this family consists only of two proteins from Escherichia coli and one from the related species Haemophilus influenzae. |
| >PF12869 tRNA_anti-like: tRNA_anti-like; InterPro: IPR024422 The function of the proteins in this entry is not known, but they contain a novel variant of the nucleic acid-binding OB fold [] | Back alignment and domain information |
|---|
Probab=91.28 E-value=0.59 Score=43.78 Aligned_cols=66 Identities=20% Similarity=0.265 Sum_probs=39.0
Q ss_pred CccCCcEEEEEEEEEeeecCCCceEEEEEEeCCE--EEEEEEcCCccchHHhccCCCCcEEEEEEEEE
Q psy8087 508 EKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSG--FIQCVLADILCQTEHALLLSTESSVQFRGRIE 573 (658)
Q Consensus 508 ~~~~g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~--~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~ 573 (658)
..+.|+.|.|.|.|..+.....+-.++.+.+.++ .++|.++.+.........|+.|+.|.|+|...
T Consensus 63 ~kY~gK~i~vtG~V~~I~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~G~~Vti~G~~~ 130 (144)
T PF12869_consen 63 KKYKGKIIEVTGTVSSIDKGFGDNYVVLLGTENGFAGVQCYFSNDQEKRASVAKLKKGQKVTIKGICT 130 (144)
T ss_dssp HHHTT-EEEEEEEEEEEEE-STT-EEEEEE-TT-S-S--EEEEEEGGGHHHHHH--TTSEEEEEEE--
T ss_pred hhcCCCEEEEEEEEEEEEEcCCCcEEEEccCCCCceeEEEEEccchhhhhhHhcCCCCCEEEEEEEEE
Confidence 3456999999999999976333445555655444 38888876543223344699999999999984
|
; PDB: 3F1Z_I. |
| >PF04076 BOF: Bacterial OB fold (BOF) protein; InterPro: IPR005220 Proteins in this entry have an OB-fold fold (oligonucleotide/oligosaccharide binding motif) | Back alignment and domain information |
|---|
Probab=90.88 E-value=0.72 Score=41.13 Aligned_cols=66 Identities=15% Similarity=0.170 Sum_probs=43.9
Q ss_pred ccccccccCCCccCCcEEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccchhhhhhcCCCccEEEEEEEeEe
Q psy8087 56 EVGYITCEGPAGYIITNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEK 132 (658)
Q Consensus 56 ~~~~~~~~~~~~~~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~~~~~~~~l~~es~V~v~G~l~~ 132 (658)
+++++.. ...++.|+|.|+|.+.-. + . -| .++|.+|.|+|-++.+. |.-..+++.+-|.+.|.+-+
T Consensus 24 TV~~a~~----~~Dd~~V~L~G~Iv~~l~-~-d-~Y-~F~D~TG~I~VeId~~~---w~g~~vt~~~~Vri~GeVDk 89 (103)
T PF04076_consen 24 TVAQAKN----AKDDTPVTLEGNIVKQLG-D-D-KY-LFRDATGEIEVEIDDDV---WRGQTVTPDDKVRISGEVDK 89 (103)
T ss_dssp -HHHHTT----S-SSEEEEEEEEEEEEEE-T-T-EE-EEEETTEEEEEE--GGG---STT----TTSEEEEEEEEEE
T ss_pred eHHHHhh----CcCCCeEEEEEEEEEEec-C-C-EE-EEECCCCcEEEEEChhh---cCCcccCCCCEEEEEEEEeC
Confidence 4555533 256788999999988553 2 2 35 78999999999998764 33356899999999999984
|
Analysis of the predicted nucleotide-binding site of the OB-fold suggests that they lack nucleic acid-binding properties. They contain an predicted N-terminal signal peptide which indicates that they localise to the periplasm where they may function to bind proteins, small molecules, or other typical OB-fold ligands. As hypothesised for the distantly related OB-fold containing bacterial enterotoxins, the loss of nucleotide-binding function and the rapid evolution of the OB-fold ligand-binding site may be associated with the presence of members in mobile genetic elements and their potential role in bacterial pathogenicity [].; PDB: 1NNX_A. |
| >PRK10053 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=90.82 E-value=2 Score=39.89 Aligned_cols=71 Identities=14% Similarity=0.234 Sum_probs=52.8
Q ss_pred ccCCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCccchHHh-ccCCCCcEEEEEEEEEecCCCCCCCCceEE
Q psy8087 509 KYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILCQTEHA-LLLSTESSVQFRGRIEKVPEGKSAPGGHEL 587 (658)
Q Consensus 509 ~~~g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~~~~~~~-~~L~~gs~V~V~G~v~~~~~~~~~~g~~El 587 (658)
-..+..|++.|.|.+.=..-. +.++|++|.|+|-++.+ .|. ..+++.|-|.+.|.+-+ . -...||
T Consensus 58 ~~Dd~~V~L~G~Iv~~lg~d~----Y~F~D~tG~I~VeID~~----~w~G~~v~p~~kV~I~GevDk-----~-~~~~~I 123 (130)
T PRK10053 58 MHDGATVSLRGNLIDHKGDDR----YVFRDKSGEINVIIPAA----VFDGREVQPDQMININGSLDK-----K-SAPPVV 123 (130)
T ss_pred CcCCCeEEEEEEEEEEeCCce----EEEECCCCcEEEEeCHH----HcCCCcCCCCCEEEEEEEECC-----C-CCCeEE
Confidence 456889999999976533322 78899999999999753 222 35999999999999932 2 234788
Q ss_pred EEEEEE
Q psy8087 588 KVDYWE 593 (658)
Q Consensus 588 ~~~~i~ 593 (658)
.|+.|+
T Consensus 124 dV~~i~ 129 (130)
T PRK10053 124 RVTHLQ 129 (130)
T ss_pred EEEEEe
Confidence 888775
|
|
| >cd04485 DnaE_OBF DnaE_OBF: A subfamily of OB folds corresponding to the C-terminal OB-fold nucleic acid binding domain of Thermus aquaticus and Escherichia coli type C replicative DNA polymerase III alpha subunit (DnaE) | Back alignment and domain information |
|---|
Probab=90.77 E-value=0.72 Score=38.04 Aligned_cols=48 Identities=29% Similarity=0.405 Sum_probs=37.0
Q ss_pred cCCCeEEEEEEcCCeEEEEEEecccchhhhhhcCCCccEEEEEEEeEeC
Q psy8087 85 PGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKV 133 (658)
Q Consensus 85 ~gk~l~Fi~LrD~~~~iQvv~~~~~~~~~~~~~l~~es~V~v~G~l~~~ 133 (658)
.|+.++|+.|.|++|.+.+++-.+....+ ...+..|..|.|.|.+..-
T Consensus 16 ~g~~~~~~~l~D~tg~~~~~~f~~~~~~~-~~~l~~g~~v~v~G~v~~~ 63 (84)
T cd04485 16 KGKRMAFVTLEDLTGSIEVVVFPETYEKY-RDLLKEDALLLVEGKVERR 63 (84)
T ss_pred CCCEEEEEEEEeCCCeEEEEECHHHHHHH-HHHhcCCCEEEEEEEEEec
Confidence 46568999999999999998875432112 2368899999999999863
|
The DNA polymerase holoenzyme of E. coli contains two copies of this replicative polymerase, each of which copies a different DNA strand. This group also contains Bacillus subtilis DnaE. Replication in B. subtilis and Staphylococcus aureus requires two different type C polymerases, polC and DnaE, both of which are thought to be included in the DNA polymerase holoenzyme. At the B. subtilis replication fork, polC appears to be involved in leading strand synthesis and DnaE in lagging strand synthesis. |
| >cd04484 polC_OBF polC_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold nucleic acid binding domain of Bacillus subtilis type C replicative DNA polymerase III alpha subunit (polC) | Back alignment and domain information |
|---|
Probab=90.75 E-value=3.9 Score=34.77 Aligned_cols=74 Identities=19% Similarity=0.160 Sum_probs=52.0
Q ss_pred EEEEEEEEee--e--cCCCceEEEEEEeCCEEEEEEEcCCccchHHhccCC-CCcEEEEEEEEEecCCCCCCCCceEEEE
Q psy8087 515 VTIFGWVHRL--R--RQGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLS-TESSVQFRGRIEKVPEGKSAPGGHELKV 589 (658)
Q Consensus 515 V~v~GwI~~~--R--~~Gkkl~Fi~Lrd~~~~iQvv~~~~~~~~~~~~~L~-~gs~V~V~G~v~~~~~~~~~~g~~El~~ 589 (658)
|+|.|-|-.+ | ..|+.+.-+.|.|.+..|-|..-.. ...+....|+ .|+.|.|+|.+....- .+++.+.+
T Consensus 2 v~i~G~Vf~~e~re~k~g~~i~~~~itD~t~Si~~K~F~~-~~~~~~~~ik~~G~~v~v~G~v~~D~f----~~e~~~~i 76 (82)
T cd04484 2 VVVEGEVFDLEIRELKSGRKILTFKVTDYTSSITVKKFLR-KDEKDKEELKSKGDWVRVRGKVQYDTF----SKELVLMI 76 (82)
T ss_pred EEEEEEEEEEEEEEecCCCEEEEEEEEcCCCCEEEEEecc-CChhHHhhcccCCCEEEEEEEEEEccC----CCceEEEe
Confidence 7789998765 2 3565666689999998877766542 2223445689 9999999999965331 36777877
Q ss_pred EEEE
Q psy8087 590 DYWE 593 (658)
Q Consensus 590 ~~i~ 593 (658)
..+.
T Consensus 77 ~~i~ 80 (82)
T cd04484 77 NDIE 80 (82)
T ss_pred eeEE
Confidence 7664
|
Replication in B. subtilis and Staphylococcus aureus requires two different polymerases, polC and DnaE. The holoenzyme is thought to include the two different polymerases. At the B. subtilis replication fork, polC appears to be involved in leading strand synthesis and DnaE in lagging strand synthesis. |
| >COG3111 Periplasmic protein with OB-fold [Function unknown] | Back alignment and domain information |
|---|
Probab=90.69 E-value=1.5 Score=39.87 Aligned_cols=59 Identities=17% Similarity=0.216 Sum_probs=46.4
Q ss_pred cCCcEEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccchhhhhhcCCCccEEEEEEEeEeC
Q psy8087 68 YIITNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKV 133 (658)
Q Consensus 68 ~~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~~~~~~~~l~~es~V~v~G~l~~~ 133 (658)
..+..|+|.|-|... .++. .| ..||.+|.|+|-++.+. |.-..+++.+-|.+.|.+-+-
T Consensus 55 ~Dda~V~l~GnIv~q--i~~D-~y-~FrD~sGeI~VeIdd~~---w~g~tv~P~dkV~I~GevDk~ 113 (128)
T COG3111 55 HDDAWVSLEGNIVRQ--IGDD-RY-VFRDASGEINVDIDDKV---WNGQTVTPKDKVRIQGEVDKD 113 (128)
T ss_pred ccCCeEEEEeeEEEe--eCCc-eE-EEEcCCccEEEEecccc---cCCcccCcccEEEEEeEEcCC
Confidence 556789999998763 3433 55 78999999999998764 344579999999999999753
|
|
| >PRK07374 dnaE DNA polymerase III subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=90.59 E-value=0.92 Score=56.61 Aligned_cols=78 Identities=13% Similarity=0.242 Sum_probs=59.3
Q ss_pred CCcEEEEEEEEEeeec----CCCceEEEEEEeCCEEEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCCCCCCCceE
Q psy8087 511 RDKRVTIFGWVHRLRR----QGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEGKSAPGGHE 586 (658)
Q Consensus 511 ~g~~V~v~GwI~~~R~----~Gkkl~Fi~Lrd~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~E 586 (658)
.|++|+|+|.|.++|. .|+.++|++|.|.+|.+.+++..+... .....|..|.+|.|+|.+... .+...
T Consensus 999 ~~~~v~v~g~i~~~k~~~Tk~G~~maf~~leD~tg~~e~vvFp~~y~-~~~~~l~~~~~~~v~g~v~~~------~~~~~ 1071 (1170)
T PRK07374 999 DKAKVSAIAMIPEMKQVTTRKGDRMAILQLEDLTGSCEAVVFPKSYE-RLSDHLMTDTRLLVWAKVDRR------DDRVQ 1071 (1170)
T ss_pred CCCEEEEEEEEEEeEecccCCCCEEEEEEEEECCCCEEEEECHHHHH-HHHHHhccCCEEEEEEEEEec------CCeEE
Confidence 4788999999999864 344699999999999999999864321 223458999999999999653 24567
Q ss_pred EEEEEEEEE
Q psy8087 587 LKVDYWEVV 595 (658)
Q Consensus 587 l~~~~i~vl 595 (658)
+.++++.-+
T Consensus 1072 ~~~~~i~~l 1080 (1170)
T PRK07374 1072 LIIDDCREI 1080 (1170)
T ss_pred EEEeeeecH
Confidence 777777544
|
|
| >PRK06920 dnaE DNA polymerase III DnaE; Reviewed | Back alignment and domain information |
|---|
Probab=90.46 E-value=0.86 Score=56.50 Aligned_cols=80 Identities=15% Similarity=0.133 Sum_probs=61.1
Q ss_pred cCCcEEEEEEEEEeeec----CCCceEEEEEEeCCEEEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCCCCCCCce
Q psy8087 510 YRDKRVTIFGWVHRLRR----QGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEGKSAPGGH 585 (658)
Q Consensus 510 ~~g~~V~v~GwI~~~R~----~Gkkl~Fi~Lrd~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~ 585 (658)
..|+.|+|+|.|.++|. .|++++|++|-|.+|.+.+++..+... .....|..+.+|.|+|.+... .+..
T Consensus 941 ~~~~~v~v~g~i~~~~~~~tk~g~~maf~~leD~tg~~e~~vFp~~y~-~~~~~l~~~~~~~v~G~v~~~------~~~~ 1013 (1107)
T PRK06920 941 HKKKVQRAIVYITSVKVIRTKKGQKMAFITFCDQNDEMEAVVFPETYI-HFSDKLQEGAIVLVDGTIELR------NHKL 1013 (1107)
T ss_pred cCCCEEEEEEEEEEeEeecCCCCCeEEEEEEeeCCCcEEEEECHHHHH-HHHHHhccCCEEEEEEEEEec------CCcE
Confidence 34778999999999853 355799999999999999999864321 233468999999999999653 2456
Q ss_pred EEEEEEEEEEe
Q psy8087 586 ELKVDYWEVVG 596 (658)
Q Consensus 586 El~~~~i~vls 596 (658)
.+.++++.-+.
T Consensus 1014 ~~~~~~i~~l~ 1024 (1107)
T PRK06920 1014 QWIVNGLYPLE 1024 (1107)
T ss_pred EEEEeecccHH
Confidence 77777776544
|
|
| >cd04483 hOBFC1_like hOBFC1_like: A subfamily of OB folds similar to that found in human OB fold containing protein 1 (hOBFC1) | Back alignment and domain information |
|---|
Probab=90.28 E-value=1.2 Score=38.91 Aligned_cols=59 Identities=20% Similarity=0.224 Sum_probs=43.1
Q ss_pred EeEEeecceecCCCeEEEEEEcCCeEEEEEEecccch-h------------------hhhhcCCCccEEEEEEEeEeCC
Q psy8087 75 IPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILCQ-T------------------EHALLLSTESSVQFRGRIEKVP 134 (658)
Q Consensus 75 ~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~~-~------------------~~~~~l~~es~V~v~G~l~~~p 134 (658)
|.|.|.++......+ -+.|.|++|.|-|++=..... . .....+..|++|.|.|.++.-.
T Consensus 2 ivG~V~sv~~~~~~~-~~tLdDgTG~Ie~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~G~vvrV~G~i~~fr 79 (92)
T cd04483 2 ILGTVVSRRERETFY-SFGVDDGTGVVNCVCWKNLSYAEVSSRSDAARILKSALMALKQAKVLEIGDLLRVRGSIRTYR 79 (92)
T ss_pred eEEEEEEEEecCCeE-EEEEecCCceEEEEEEcCcCcccccccccccccccccccccccccccCCCCEEEEEEEEeccC
Confidence 679999988887654 449999999988887543210 0 1123589999999999998643
|
Members of this group belong to the Replication protein A subunit 2 (RPA2) family of OB folds. RPA is a nuclear ssDNA binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The OB fold domain of RPA2 has dual roles in ssDNA binding and trimerization. |
| >PRK05672 dnaE2 error-prone DNA polymerase; Validated | Back alignment and domain information |
|---|
Probab=90.17 E-value=1.1 Score=55.62 Aligned_cols=80 Identities=25% Similarity=0.358 Sum_probs=61.9
Q ss_pred CCcEEEEEEEEEeeecC--CCceEEEEEEeCCEEEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCCCCCCCceEEE
Q psy8087 511 RDKRVTIFGWVHRLRRQ--GKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEGKSAPGGHELK 588 (658)
Q Consensus 511 ~g~~V~v~GwI~~~R~~--Gkkl~Fi~Lrd~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~El~ 588 (658)
.|+.|+|+|.|..++.. .|+++|+.|-|.+|.+.+++..+... .....|..|.++.|+|.+... .+.+.+.
T Consensus 952 ~~~~v~v~g~i~~~~~~~TkkGmaf~~leD~~g~~e~~ifp~~~~-~~~~~l~~~~~~~v~g~v~~~------~~~~~~~ 1024 (1046)
T PRK05672 952 DGRRVRVAGVVTHRQRPGTASGVTFLTLEDETGMVNVVVWPGLWE-RQRREALGARLLLVRGRVQNA------EGVRHLV 1024 (1046)
T ss_pred CCCEEEEEEEEEEEEEecCCCceEEEEEecCCCCEEEEECHHHHH-HHHHHhccCCEEEEEEEEEec------CCeEEEE
Confidence 47789999999988654 33599999999999999999864321 223458999999999999653 3457888
Q ss_pred EEEEEEEec
Q psy8087 589 VDYWEVVGL 597 (658)
Q Consensus 589 ~~~i~vls~ 597 (658)
++++.-+..
T Consensus 1025 ~~~i~~~~~ 1033 (1046)
T PRK05672 1025 ADRLEDLSP 1033 (1046)
T ss_pred EeeeechHH
Confidence 888876544
|
|
| >COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=89.90 E-value=1.4 Score=48.79 Aligned_cols=78 Identities=21% Similarity=0.273 Sum_probs=62.8
Q ss_pred CcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCCCCCCCceEEEEEE
Q psy8087 512 DKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEGKSAPGGHELKVDY 591 (658)
Q Consensus 512 g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~El~~~~ 591 (658)
=..|+|.|-|.+++...++-.|+.|.|....|+|++-+.... ..--.+..|+-|.|+|.+..-++ .|.+.|.+++
T Consensus 23 ~~~V~v~GEISn~t~~~sgH~YFtLKD~~A~i~c~mf~~~~~-~l~f~p~eG~~V~v~G~is~Y~~----rG~YQi~~~~ 97 (440)
T COG1570 23 LGQVWVRGEISNFTRPASGHLYFTLKDERAQIRCVMFKGNNR-RLKFRPEEGMQVLVRGKISLYEP----RGDYQIVAES 97 (440)
T ss_pred CCeEEEEEEecCCccCCCccEEEEEccCCceEEEEEEcCccc-ccCCCccCCCEEEEEEEEEEEcC----CCceEEEEec
Confidence 356999999999987766789999999999999999864321 11124889999999999976552 6899999999
Q ss_pred EEE
Q psy8087 592 WEV 594 (658)
Q Consensus 592 i~v 594 (658)
++.
T Consensus 98 ~~p 100 (440)
T COG1570 98 MEP 100 (440)
T ss_pred CCc
Confidence 884
|
|
| >PRK05673 dnaE DNA polymerase III subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=89.03 E-value=1.3 Score=55.24 Aligned_cols=80 Identities=28% Similarity=0.298 Sum_probs=61.5
Q ss_pred CCcEEEEEEEEEeeec----CCCceEEEEEEeCCEEEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCCCCCCCceE
Q psy8087 511 RDKRVTIFGWVHRLRR----QGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEGKSAPGGHE 586 (658)
Q Consensus 511 ~g~~V~v~GwI~~~R~----~Gkkl~Fi~Lrd~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~E 586 (658)
.|+.|++.|.|.++|. .|+.++|++|.|.+|.+.+++-.+... .....|..|++|.|+|.+... .+.+.
T Consensus 976 ~g~~V~v~G~I~~vk~~~TKkG~~mafltLeD~TG~iEvviFp~~ye-~~~~~L~~g~iV~V~GkVe~~------~~~~q 1048 (1135)
T PRK05673 976 GGSVVTVAGLVVSVRRRVTKRGNKMAIVTLEDLSGRIEVMLFSEALE-KYRDLLEEDRIVVVKGQVSFD------DGGLR 1048 (1135)
T ss_pred cCceEEEEEEEEEEEecccCCCCeEEEEEEEeCCCcEEEEECHHHHH-HHHHHhccCCEEEEEEEEEec------CCeEE
Confidence 4788999999998865 355699999999999999999864311 233468999999999999652 25577
Q ss_pred EEEEEEEEEec
Q psy8087 587 LKVDYWEVVGL 597 (658)
Q Consensus 587 l~~~~i~vls~ 597 (658)
|.++++.-+..
T Consensus 1049 lii~~I~~L~~ 1059 (1135)
T PRK05673 1049 LTAREVMDLEE 1059 (1135)
T ss_pred EEEeecccHHH
Confidence 88887765544
|
|
| >cd04488 RecG_wedge_OBF RecG_wedge_OBF: A subfamily of OB folds corresponding to the OB fold found in the N-terminal (wedge) domain of Escherichia coli RecG | Back alignment and domain information |
|---|
Probab=88.93 E-value=4.3 Score=32.57 Aligned_cols=56 Identities=23% Similarity=0.366 Sum_probs=39.5
Q ss_pred EEEEEEeeec--C-CCceEEEEEEeCCEEEEEEEcCCccchHHhccCCCCcEEEEEEEEEe
Q psy8087 517 IFGWVHRLRR--Q-GKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEK 574 (658)
Q Consensus 517 v~GwI~~~R~--~-Gkkl~Fi~Lrd~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~ 574 (658)
+.|.|.+... . |++..-+.+.|+++.+.++.-... ......++.|+.+.|.|++..
T Consensus 2 i~~~V~~~~~~~~~~~~~~~~~~~D~~g~i~~~~F~~~--~~~~~~~~~G~~~~v~Gkv~~ 60 (75)
T cd04488 2 VEGTVVSVEVVPRRGRRRLKVTLSDGTGTLTLVFFNFQ--PYLKKQLPPGTRVRVSGKVKR 60 (75)
T ss_pred EEEEEEEEEeccCCCccEEEEEEEcCCCEEEEEEECCC--HHHHhcCCCCCEEEEEEEEee
Confidence 5566655422 1 345777889999999999886421 123457999999999999964
|
RecG is a branched-DNA-specific helicase, which catalyzes the interconversion of a DNA replication fork to a four-stranded (Holliday) junction in vivo and in vitro. This interconversion provides a route to repair stalled forks. The RecG monomer contains three domains. The N-terminal domain is named for its wedge structure, and may provide the specificity of RecG for binding branched-DNA structures. During the reversal of fork to Holliday junction, the wedge domain is fixed at the junction of the fork where the leading and lagging strand duplex arms meet, and is thought to promote the unwinding of the nascent leading and lagging strands. In order to form the Holliday junction, these nascent strands would be annealed, and the parental strands reannealed. The wedge domain may also be a processivity factor of RecG on these branched cha |
| >COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=88.70 E-value=0.98 Score=51.20 Aligned_cols=106 Identities=21% Similarity=0.234 Sum_probs=76.3
Q ss_pred CchHHHhhhCCcEEEcCCccccccC--CC------Cccceee-ccCCcceeeccCHHHHHHHhcc----c---C-CcEEE
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV--EG------GSTLFSL-NFFGEPAYLTQSSQLYLETCLP----A---L-GDVYC 222 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~--eG------~~~~F~~-~~~~~~~~L~~Spqlylk~li~----g---~-~rvfe 222 (658)
+.+|+.|++-|..||--|+|+++.- |. |.+.|.+ +--+.++.|+-..|--.--++. + + =++||
T Consensus 55 ~iir~em~~~G~~Evl~P~L~p~eLwkEs~r~~~f~~El~~v~drg~~~l~L~PTsEe~it~~~~~~i~SYkdLPl~lYQ 134 (500)
T COG0442 55 NIIREEMDKIGAQEVLFPTLIPAELWKESGRWEGFGPELFRVKDRGDRPLALRPTSEEVITDMFRKWIRSYKDLPLKLYQ 134 (500)
T ss_pred HHHHHHHHhcCceEEechhcCHHHHHHHhChhhhcchhhEEEEccCCceeeeCCCcHHHHHHHHHHHhhhhhhCCcceee
Confidence 5899999999999999999975311 11 2345543 3336789998777644332221 3 3 47999
Q ss_pred EeeeeecCCCCC--ccCcceeeeeeeEeecCCHHHHHHHHHHHHH
Q psy8087 223 IAQSYRAENSRT--RRHLAEYTHVEAECAFLTFDDLLDKLEDLIC 265 (658)
Q Consensus 223 I~~~FR~E~~~~--~rHl~EFt~lE~e~a~~d~~~~m~~~e~li~ 265 (658)
|...||+|--.+ ---.-||+|=|.|..++|.+++....++++.
T Consensus 135 i~~kfRdE~rpr~gllR~REF~mkdaySfh~~~e~a~~~y~~~~~ 179 (500)
T COG0442 135 IQSKFRDEKRPRFGLLRGREFLMKDAYSFHADEEDAEETYEKMLD 179 (500)
T ss_pred eeeEEeccccCCCCccchheeeecccccccCCHHHHHHHHHHHHH
Confidence 999999996211 0014699999999999999999998888775
|
|
| >cd04474 RPA1_DBD_A RPA1_DBD_A: A subfamily of OB folds corresponding to the second OB fold, the ssDNA-binding domain (DBD)-A, of human RPA1 (also called RPA70) | Back alignment and domain information |
|---|
Probab=88.67 E-value=2.4 Score=37.70 Aligned_cols=77 Identities=19% Similarity=0.161 Sum_probs=52.7
Q ss_pred cEEEEEEEEEee---ec------CCCceEEEEEEeC-CEEEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCC--CC
Q psy8087 513 KRVTIFGWVHRL---RR------QGKGLMFVTLRDG-SGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEG--KS 580 (658)
Q Consensus 513 ~~V~v~GwI~~~---R~------~Gkkl~Fi~Lrd~-~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~--~~ 580 (658)
..++|+|||.++ |. .| ++.-++|.|. ++.|++.+-.+.. ..+...|..|+++.|+|--.+...+ +.
T Consensus 10 ~~~~I~~rV~~k~~~~~f~~~~~~g-~~~~~~l~De~~~~I~~t~~~~~~-~~f~~~l~eG~vy~i~~~~V~~a~~~y~~ 87 (104)
T cd04474 10 NKWTIKARVTNKSDIRTWSNARGEG-KLFSFDLLDEDGGEIRATFFNDAV-DKFYDLLEVGKVYYISKGSVKVANKKFNT 87 (104)
T ss_pred CcEEEEEEEeeccccccccCCCCCc-EEEEEEEEECCCCEEEEEEehHHH-HHhhcccccccEEEEeccEEeeccccCCC
Confidence 458999999753 32 24 5788999999 8889999976432 1345579999999999554443322 23
Q ss_pred CCCceEEEEEE
Q psy8087 581 APGGHELKVDY 591 (658)
Q Consensus 581 ~~g~~El~~~~ 591 (658)
-+.++||....
T Consensus 88 ~~~~yeI~f~~ 98 (104)
T cd04474 88 LKNDYEITFNR 98 (104)
T ss_pred CCCcEEEEECC
Confidence 34678887654
|
RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). In addition to DBD-A, RPA1 contains three other OB folds: DBD-B, DBD-C, and RPA1N. The major DNA binding activity of human RPA (hRPA) and Saccharomyces cerevisiae RPA (ScRPA) is associated with DBD-A and DBD-B of RPA1. RPA1 DBD-C is involved in trimerization. The ssDNA-binding mechanism is believed to be multistep and to involve conformational change. Although ScRPA and the hRPA have similar ssDNA-binding properties, they differ funct |
| >TIGR00156 conserved hypothetical protein TIGR00156 | Back alignment and domain information |
|---|
Probab=88.37 E-value=1.1 Score=41.33 Aligned_cols=58 Identities=16% Similarity=0.150 Sum_probs=45.9
Q ss_pred cCCcEEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccchhhhhhcCCCccEEEEEEEeEe
Q psy8087 68 YIITNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEK 132 (658)
Q Consensus 68 ~~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~~~~~~~~l~~es~V~v~G~l~~ 132 (658)
..+..|+|.|.|.+.... . -| ..+|++|.|+|-++.+. |.-..+++++-|.+.|.|-.
T Consensus 55 ~Ddt~V~L~G~Iv~~l~~--d-~Y-~F~D~TG~I~VeId~~~---w~G~~v~p~d~V~I~GeVDk 112 (126)
T TIGR00156 55 HDGASVTLRGNIISHIGD--D-RY-VFRDKSGEINVVIPAAV---WNGREVQPKDMVNISGSLDK 112 (126)
T ss_pred CCCCEEEEEEEEEEEeCC--c-eE-EEECCCCCEEEEECHHH---cCCCcCCCCCEEEEEEEECC
Confidence 567889999999885532 2 34 78999999999997653 33357899999999999974
|
As of the last revision, this family consists only of two proteins from Escherichia coli and one from the related species Haemophilus influenzae. |
| >PRK07279 dnaE DNA polymerase III DnaE; Reviewed | Back alignment and domain information |
|---|
Probab=88.13 E-value=1.7 Score=53.54 Aligned_cols=77 Identities=14% Similarity=0.228 Sum_probs=58.1
Q ss_pred CcEEEEEEEEEeeec-----CCCceEEEEEEeCCEEEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCCCCCCCceE
Q psy8087 512 DKRVTIFGWVHRLRR-----QGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEGKSAPGGHE 586 (658)
Q Consensus 512 g~~V~v~GwI~~~R~-----~Gkkl~Fi~Lrd~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~E 586 (658)
++.+.+.|+|.+++. .|+.++|++|-|.+|.+.+++..+... .....|..+.+|.|+|.+... .++..
T Consensus 884 ~~~~~~~~~i~~~~~~~tk~~g~~maf~~leD~~g~ie~~vFp~~y~-~~~~~l~~~~~~~v~G~v~~~------~~~~~ 956 (1034)
T PRK07279 884 NSEATILVQIQSIRVIRTKTKGQQMAFLSVTDTKKKLDVTLFPETYR-QYKDELKEGKFYYLKGKIQER------DGRLQ 956 (1034)
T ss_pred CCcceEEEEEEEEEEEEEcCCCCeEEEEEEeeCCCcEEEEECHHHHH-HHHHHhccCCEEEEEEEEEec------CCeeE
Confidence 667889999987652 466799999999999999999864321 233468999999999999653 24567
Q ss_pred EEEEEEEEE
Q psy8087 587 LKVDYWEVV 595 (658)
Q Consensus 587 l~~~~i~vl 595 (658)
+.++++.-+
T Consensus 957 l~~~~i~~l 965 (1034)
T PRK07279 957 MVLQQIQEA 965 (1034)
T ss_pred EEEeeeecc
Confidence 777776533
|
|
| >cd04490 PolII_SU_OBF PolII_SU_OBF: A subfamily of OB folds corresponding to the OB fold found in Pyrococcus abyssi DNA polymerase II (PolII) small subunit | Back alignment and domain information |
|---|
Probab=88.13 E-value=2.7 Score=35.53 Aligned_cols=57 Identities=19% Similarity=0.239 Sum_probs=43.8
Q ss_pred EEEeEEeeccee--cCCCeEEEEEEcCCeEEEEEEecccch--hhhhhcCCCccEEEEEEEeEe
Q psy8087 73 INIPAIPGPPAI--PGKGLMFVTLRDGSGFIQCVLADILCQ--TEHALLLSTESSVQFRGRIEK 132 (658)
Q Consensus 73 v~~~Grv~~~r~--~gk~l~Fi~LrD~~~~iQvv~~~~~~~--~~~~~~l~~es~V~v~G~l~~ 132 (658)
|.++|-|..+|. .|+ - |+.|-|.+|.+.+++..+... .+. ..+..+.+|.|+|.+..
T Consensus 2 v~i~GiI~~v~~TK~g~-~-~~~leD~~G~~Ev~~F~~~~~~~~~~-~~l~~d~~v~v~g~v~~ 62 (79)
T cd04490 2 VSIIGMVNDVRSTKNGH-R-IVELEDTTGRITVLLTKDKEELFEEA-EDILPDEVIGVSGTVSK 62 (79)
T ss_pred EEEEEEEeEEEEcCCCC-E-EEEEECCCCEEEEEEeCchhhhhhhh-hhccCCCEEEEEEEEec
Confidence 577788877762 233 4 999999999999999887654 332 35888999999999965
|
PolII is a family D DNA polymerase, having a 3-prime to 5-prime exonuclease activity. P. abyssi PolII is heterodimeric. The large subunit appears to be the polymerase, and the small subunit may be the exonuclease. The small subunit contains a calcineurin-like phosphatase superfamily domain C-terminal to this OB-fold domain. |
| >PRK07373 DNA polymerase III subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=87.70 E-value=1.3 Score=49.67 Aligned_cols=64 Identities=17% Similarity=0.216 Sum_probs=51.8
Q ss_pred CCcEEEEeEEeecceec----CCCeEEEEEEcCCeEEEEEEecccchhhhhhcCCCccEEEEEEEeEeC
Q psy8087 69 IITNINIPAIPGPPAIP----GKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKV 133 (658)
Q Consensus 69 ~~~~v~~~Grv~~~r~~----gk~l~Fi~LrD~~~~iQvv~~~~~~~~~~~~~l~~es~V~v~G~l~~~ 133 (658)
.++.|+|+|.|.+++.. |+.++|+.|.|.+|.+.+++-.+....+. ..+..+.+|.|+|.+...
T Consensus 279 ~~~~v~vaG~I~~ik~~~TKkG~~maf~~leD~tG~ie~vvFp~~y~~~~-~~l~~~~~v~v~G~v~~~ 346 (449)
T PRK07373 279 EKTKVSAVVMLNEVKKIVTKKGDPMAFLQLEDLSGQSEAVVFPKSYERIS-ELLQVDARLIIWGKVDRR 346 (449)
T ss_pred CCCEEEEEEEEEEeEecccCCCCEEEEEEEEECCCCEEEEECHHHHHHHH-HHhccCCEEEEEEEEEec
Confidence 46789999999997744 66699999999999999999876543322 358899999999999863
|
|
| >cd04492 YhaM_OBF_like YhaM_OBF_like: A subfamily of OB folds similar to that found in Bacillus subtilis YhaM and Staphylococcus aureus cmp-binding factor-1 (SaCBF1) | Back alignment and domain information |
|---|
Probab=87.52 E-value=4 Score=33.75 Aligned_cols=48 Identities=29% Similarity=0.360 Sum_probs=38.2
Q ss_pred ecCCCeEEEEEEcCCeEEEEEEecccchhhhhhcCCCccEEEEEEEeEeC
Q psy8087 84 IPGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKV 133 (658)
Q Consensus 84 ~~gk~l~Fi~LrD~~~~iQvv~~~~~~~~~~~~~l~~es~V~v~G~l~~~ 133 (658)
+.|+.++++.|.|++|.+.+++-.+.. +....+..|..|.|.|.+..-
T Consensus 15 k~g~~~~~~~l~D~tg~i~~~~f~~~~--~~~~~l~~g~~v~v~G~v~~~ 62 (83)
T cd04492 15 KNGKPYLALTLQDKTGEIEAKLWDASE--EDEEKFKPGDIVHVKGRVEEY 62 (83)
T ss_pred cCCCcEEEEEEEcCCCeEEEEEcCCCh--hhHhhCCCCCEEEEEEEEEEe
Confidence 456679999999999999999876432 123468999999999999763
|
Both these proteins are 3'-to-5'exoribonucleases. YhaM requires Mn2+ or Co2+ for activity and is inactive in the presence of Mg2+. YhaM also has a Mn2+ dependent 3'-to-5'single-stranded DNA exonuclease activity. SaCBF is also a double-stranded DNA binding protein, binding specifically to cmp, the replication enhancer found in S. aureus plasmid pT181. Proteins in this group combine an N-terminal OB fold with a C-terminal HD domain. The HD domain is found in metal-dependent phosphohydrolases. |
| >PF08661 Rep_fac-A_3: Replication factor A protein 3; InterPro: IPR013970 Replication factor A is involved in eukaryotic DNA replication, recombination and repair | Back alignment and domain information |
|---|
Probab=86.33 E-value=5.2 Score=35.86 Aligned_cols=58 Identities=21% Similarity=0.223 Sum_probs=38.9
Q ss_pred cCCccCCcEEEEEEEEEeeecCCCceEEEEEE-eCCEEEEEEEcCCccchHHhccCCCCcEEEEEEEEE
Q psy8087 506 DGEKYRDKRVTIFGWVHRLRRQGKGLMFVTLR-DGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIE 573 (658)
Q Consensus 506 ~~~~~~g~~V~v~GwI~~~R~~Gkkl~Fi~Lr-d~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~ 573 (658)
.+..+.|+.|+|-|+|.+....|. . +.|+ .+++.++|.++... .+..+.+|.|.|++.
T Consensus 12 ~L~~~~gk~VrivGkv~~~~~~g~--~-~~l~~~d~~~V~v~l~~~~-------~~~~~~~vEviG~V~ 70 (109)
T PF08661_consen 12 MLSQFVGKTVRIVGKVESVDPDGG--S-ATLSTSDGGQVTVSLNPPS-------DEELSKYVEVIGKVN 70 (109)
T ss_dssp GGGGGTTSEEEEEEEEEEE-TTSS--E-EEEE-TTS-EEEEEESS---------SS---SEEEEEEEE-
T ss_pred HHHhhCCCeEEEEEEEeeEcCCCC--E-EEEEcCCCCEEEEEeCCCC-------CCCCCCEEEEEEEEc
Confidence 346789999999999999997764 3 3444 34567888887532 345689999999994
|
; PDB: 2PI2_H 1L1O_D 3KDF_A 2Z6K_D 1QUQ_D 2PQA_D. |
| >TIGR00237 xseA exodeoxyribonuclease VII, large subunit | Back alignment and domain information |
|---|
Probab=86.30 E-value=4 Score=45.77 Aligned_cols=79 Identities=19% Similarity=0.220 Sum_probs=62.0
Q ss_pred cEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCCCCCCCceEEEEEEE
Q psy8087 513 KRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEGKSAPGGHELKVDYW 592 (658)
Q Consensus 513 ~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~El~~~~i 592 (658)
..|+|.|=|.+.+.+.++=+|++|.|....|.|++-..... ...-.+..|+-|.|.|.+.--+ ..|.+.|.++++
T Consensus 18 ~~v~V~GEisn~~~~~sGH~YFtLkD~~a~i~~vmf~~~~~-~l~f~~~~G~~V~v~g~v~~y~----~~G~~ql~v~~i 92 (432)
T TIGR00237 18 LQVWIQGEISNFTQPVSGHWYFTLKDENAQVRCVMFRGNNN-RLKFRPQNGQQVLVRGGISVYE----PRGDYQIICFEM 92 (432)
T ss_pred CcEEEEEEecCCeeCCCceEEEEEEcCCcEEEEEEEcChhh-CCCCCCCCCCEEEEEEEEEEEC----CCCcEEEEEEEe
Confidence 37999999999987655678999999999999999765321 1112479999999999996544 268899999999
Q ss_pred EEEe
Q psy8087 593 EVVG 596 (658)
Q Consensus 593 ~vls 596 (658)
+..+
T Consensus 93 ~~~G 96 (432)
T TIGR00237 93 QPAG 96 (432)
T ss_pred ccCC
Confidence 8643
|
This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits. |
| >PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed | Back alignment and domain information |
|---|
Probab=85.56 E-value=4.9 Score=45.05 Aligned_cols=80 Identities=23% Similarity=0.300 Sum_probs=63.1
Q ss_pred CcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCCCCCCCceEEEEEE
Q psy8087 512 DKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEGKSAPGGHELKVDY 591 (658)
Q Consensus 512 g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~El~~~~ 591 (658)
-..|+|.|=|.+.+.++++=+|++|.|....|-|++-..... ...-.+..|+-|.|.|.+.--+ ..|.+.|.+++
T Consensus 23 ~~~v~v~gEis~~~~~~sGH~Yf~Lkd~~a~i~~~~~~~~~~-~~~~~~~~G~~v~v~g~~~~y~----~~g~~ql~v~~ 97 (438)
T PRK00286 23 LGQVWVRGEISNFTRHSSGHWYFTLKDEIAQIRCVMFKGSAR-RLKFKPEEGMKVLVRGKVSLYE----PRGDYQLIVEE 97 (438)
T ss_pred CCcEEEEEEeCCCeeCCCCeEEEEEEcCCcEEEEEEEcChhh-cCCCCCCCCCEEEEEEEEEEEC----CCCCEEEEEEE
Confidence 467999999999977655779999999999999999764321 1113589999999999997533 26889999999
Q ss_pred EEEEe
Q psy8087 592 WEVVG 596 (658)
Q Consensus 592 i~vls 596 (658)
++..+
T Consensus 98 i~~~g 102 (438)
T PRK00286 98 IEPAG 102 (438)
T ss_pred eeeCC
Confidence 98654
|
|
| >COG5235 RFA2 Single-stranded DNA-binding replication protein A (RPA), medium (30 kD) subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=85.25 E-value=5.4 Score=39.63 Aligned_cols=76 Identities=16% Similarity=0.247 Sum_probs=57.1
Q ss_pred EEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCc-cchHHhccCCCCcEEEEEEEEEecCCCCCCCCceEEEEEEE
Q psy8087 514 RVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADIL-CQTEHALLLSTESSVQFRGRIEKVPEGKSAPGGHELKVDYW 592 (658)
Q Consensus 514 ~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~-~~~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~El~~~~i 592 (658)
.|++-|||.++..+- .=+|++|-||+|.|-|-.=... ...+..+.+..+-.|.|.|-++.= .|...|.+..|
T Consensus 68 ~V~fVGvvrni~~~t-tn~~~~iEDGTG~Ievr~W~~~~~~~e~~~d~~~~~yvkV~G~lk~F------~GK~~I~~~~i 140 (258)
T COG5235 68 NVQFVGVVRNIKTST-TNSMFVIEDGTGSIEVRFWPGNSYEEEQCKDLEEQNYVKVNGSLKTF------NGKRSISASHI 140 (258)
T ss_pred eEEEEEEEEeeeecc-cceEEEEecCCceEEEEecCCCchHHHhccccccccEEEEecceeee------CCeeEEehhhe
Confidence 488999999999885 5678899999999998875433 223556678888899999998532 35667777666
Q ss_pred EEEe
Q psy8087 593 EVVG 596 (658)
Q Consensus 593 ~vls 596 (658)
.-+-
T Consensus 141 ~~I~ 144 (258)
T COG5235 141 SAIE 144 (258)
T ss_pred eecc
Confidence 5543
|
|
| >COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=84.72 E-value=1.8 Score=49.04 Aligned_cols=65 Identities=14% Similarity=0.066 Sum_probs=51.2
Q ss_pred cCCcEEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccc-hhhhhhcCCCccEEEEEEEeEeCCC
Q psy8087 68 YIITNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILC-QTEHALLLSTESSVQFRGRIEKVPE 135 (658)
Q Consensus 68 ~~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~-~~~~~~~l~~es~V~v~G~l~~~p~ 135 (658)
.+|++|+|.|-|..++..++- +-..|+|++|.+++-.-.... -.+ -.+..|++|.|+|.+.....
T Consensus 211 ~ig~tV~I~GeV~qikqT~GP-TVFtltDetg~i~aAAFe~aGvRAy--P~IevGdiV~ViG~V~~r~g 276 (715)
T COG1107 211 MIGKTVRIEGEVTQIKQTSGP-TVFTLTDETGAIWAAAFEEAGVRAY--PEIEVGDIVEVIGEVTRRDG 276 (715)
T ss_pred hcCceEEEEEEEEEEEEcCCC-EEEEEecCCCceehhhhccCCcccC--CCCCCCceEEEEEEEeecCC
Confidence 689999999999999999875 555999999999986544211 111 25899999999999987544
|
|
| >PF03100 CcmE: CcmE; InterPro: IPR004329 CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria | Back alignment and domain information |
|---|
Probab=84.47 E-value=13 Score=34.47 Aligned_cols=74 Identities=26% Similarity=0.389 Sum_probs=47.7
Q ss_pred cCCcEEEEEEEEE--eeec--CCCceEEEEEEeCCEEEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCCCCCCCce
Q psy8087 510 YRDKRVTIFGWVH--RLRR--QGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEGKSAPGGH 585 (658)
Q Consensus 510 ~~g~~V~v~GwI~--~~R~--~Gkkl~Fi~Lrd~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~ 585 (658)
..|+.|+|.|+|. ++.. .+..+.| +|.|+...+.|+.++... ..++.|..|.|+|.+.. .|
T Consensus 48 ~~~~~vrv~G~V~~gSv~~~~~~~~~~F-~i~D~~~~i~V~Y~G~~P-----d~F~eg~~VVv~G~~~~-------~g-- 112 (131)
T PF03100_consen 48 KVGRKVRVGGLVVEGSVEYDPDGNTLTF-TITDGGKEIPVVYTGPLP-----DLFREGQGVVVEGRLGE-------DG-- 112 (131)
T ss_dssp -TTSEEEEEEEEECTTEEE-TTSSEEEE-EEE-SS-EEEEEEES--C-----TT--TTSEEEEEEEECC-------TS--
T ss_pred cCCceEEEeeEEccCCEEEcCCCCEEEE-EEEECCcEEEEEECCCCC-----ccccCCCeEEEEEEECC-------CC--
Confidence 4789999999998 5533 3446776 778999999999987533 24788999999999821 12
Q ss_pred EEEEEEEEEEecCCC
Q psy8087 586 ELKVDYWEVVGLAPA 600 (658)
Q Consensus 586 El~~~~i~vls~~~~ 600 (658)
.++++ +||.+|+.
T Consensus 113 ~F~A~--~lL~Kcps 125 (131)
T PF03100_consen 113 VFEAT--ELLAKCPS 125 (131)
T ss_dssp EEEEE--EEEETS--
T ss_pred EEEEE--EEEeCCCC
Confidence 34554 45678863
|
Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor.; GO: 0017003 protein-heme linkage, 0017004 cytochrome complex assembly, 0005886 plasma membrane; PDB: 1SR3_A 2KCT_A 1J6Q_A 1LM0_A. |
| >PRK10053 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=84.39 E-value=2.6 Score=39.13 Aligned_cols=58 Identities=14% Similarity=0.222 Sum_probs=45.7
Q ss_pred cCCcEEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccchhhhhhcCCCccEEEEEEEeEe
Q psy8087 68 YIITNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEK 132 (658)
Q Consensus 68 ~~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~~~~~~~~l~~es~V~v~G~l~~ 132 (658)
..+..|+|.|.|.+.- |+. -| ..+|++|.|+|-++.+. |.-..+++++-|.+.|.+-+
T Consensus 59 ~Dd~~V~L~G~Iv~~l--g~d-~Y-~F~D~tG~I~VeID~~~---w~G~~v~p~~kV~I~GevDk 116 (130)
T PRK10053 59 HDGATVSLRGNLIDHK--GDD-RY-VFRDKSGEINVIIPAAV---FDGREVQPDQMININGSLDK 116 (130)
T ss_pred cCCCeEEEEEEEEEEe--CCc-eE-EEECCCCcEEEEeCHHH---cCCCcCCCCCEEEEEEEECC
Confidence 5678899999998744 332 34 77999999999998754 33357999999999999975
|
|
| >PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed | Back alignment and domain information |
|---|
Probab=83.47 E-value=11 Score=35.91 Aligned_cols=75 Identities=25% Similarity=0.381 Sum_probs=53.9
Q ss_pred ccCCcEEEEEEEEE--eeec-CCCceEEEEEEeCCEEEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCCCCCCCce
Q psy8087 509 KYRDKRVTIFGWVH--RLRR-QGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEGKSAPGGH 585 (658)
Q Consensus 509 ~~~g~~V~v~GwI~--~~R~-~Gkkl~Fi~Lrd~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~ 585 (658)
...|+.|+|.|+|. ++.. .+..+.| .|.|++..|.|..++... ..++.|..|.|+|.+.. .|
T Consensus 48 ~~~g~~vrvgG~V~~gSi~~~~~~~~~F-~ltD~~~~i~V~Y~G~lP-----d~F~eg~~VVv~G~~~~-------~g-- 112 (148)
T PRK13254 48 APAGRRFRLGGLVEKGSVQRGDGLTVRF-VVTDGNATVPVVYTGILP-----DLFREGQGVVAEGRLQD-------GG-- 112 (148)
T ss_pred ccCCCeEEEeEEEecCcEEeCCCCEEEE-EEEeCCeEEEEEECCCCC-----ccccCCCEEEEEEEECC-------CC--
Confidence 35799999999995 4543 4446777 779999899999987532 14688999999999931 11
Q ss_pred EEEEEEEEEEecCCC
Q psy8087 586 ELKVDYWEVVGLAPA 600 (658)
Q Consensus 586 El~~~~i~vls~~~~ 600 (658)
.++++ +||.+|+.
T Consensus 113 ~F~A~--~vLaKc~s 125 (148)
T PRK13254 113 VFVAD--EVLAKHDE 125 (148)
T ss_pred eEEEE--EEEecCCC
Confidence 34444 56789975
|
|
| >cd04488 RecG_wedge_OBF RecG_wedge_OBF: A subfamily of OB folds corresponding to the OB fold found in the N-terminal (wedge) domain of Escherichia coli RecG | Back alignment and domain information |
|---|
Probab=83.43 E-value=7.2 Score=31.23 Aligned_cols=46 Identities=24% Similarity=0.408 Sum_probs=35.2
Q ss_pred CCCeEEEEEEcCCeEEEEEEecccchhhhhhcCCCccEEEEEEEeEeC
Q psy8087 86 GKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKV 133 (658)
Q Consensus 86 gk~l~Fi~LrD~~~~iQvv~~~~~~~~~~~~~l~~es~V~v~G~l~~~ 133 (658)
++...-+.+.|+++.+.+++-... .+....++.|+.+.+.|++...
T Consensus 16 ~~~~~~~~~~D~~g~i~~~~F~~~--~~~~~~~~~G~~~~v~Gkv~~~ 61 (75)
T cd04488 16 GRRRLKVTLSDGTGTLTLVFFNFQ--PYLKKQLPPGTRVRVSGKVKRF 61 (75)
T ss_pred CccEEEEEEEcCCCEEEEEEECCC--HHHHhcCCCCCEEEEEEEEeec
Confidence 345777899999999999886521 2233468999999999999864
|
RecG is a branched-DNA-specific helicase, which catalyzes the interconversion of a DNA replication fork to a four-stranded (Holliday) junction in vivo and in vitro. This interconversion provides a route to repair stalled forks. The RecG monomer contains three domains. The N-terminal domain is named for its wedge structure, and may provide the specificity of RecG for binding branched-DNA structures. During the reversal of fork to Holliday junction, the wedge domain is fixed at the junction of the fork where the leading and lagging strand duplex arms meet, and is thought to promote the unwinding of the nascent leading and lagging strands. In order to form the Holliday junction, these nascent strands would be annealed, and the parental strands reannealed. The wedge domain may also be a processivity factor of RecG on these branched cha |
| >PF12869 tRNA_anti-like: tRNA_anti-like; InterPro: IPR024422 The function of the proteins in this entry is not known, but they contain a novel variant of the nucleic acid-binding OB fold [] | Back alignment and domain information |
|---|
Probab=83.06 E-value=4.1 Score=38.04 Aligned_cols=67 Identities=15% Similarity=0.090 Sum_probs=38.3
Q ss_pred ccCCcEEEEeEEeecceecCCCeEEEEEEcCCe--EEEEEEecccchhhhhhcCCCccEEEEEEEeEeC
Q psy8087 67 GYIITNINIPAIPGPPAIPGKGLMFVTLRDGSG--FIQCVLADILCQTEHALLLSTESSVQFRGRIEKV 133 (658)
Q Consensus 67 ~~~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~--~iQvv~~~~~~~~~~~~~l~~es~V~v~G~l~~~ 133 (658)
.+.|+.+.|.|.|..+.....+-.++...+..+ .++|.+..+.........|+.|+.|.|.|.+.-.
T Consensus 64 kY~gK~i~vtG~V~~I~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~G~~Vti~G~~~g~ 132 (144)
T PF12869_consen 64 KYKGKIIEVTGTVSSIDKGFGDNYVVLLGTENGFAGVQCYFSNDQEKRASVAKLKKGQKVTIKGICTGY 132 (144)
T ss_dssp HHTT-EEEEEEEEEEEEE-STT-EEEEEE-TT-S-S--EEEEEEGGGHHHHHH--TTSEEEEEEE----
T ss_pred hcCCCEEEEEEEEEEEEEcCCCcEEEEccCCCCceeEEEEEccchhhhhhHhcCCCCCEEEEEEEEEee
Confidence 457899999999999977444445655655444 4888887764221122359999999999998653
|
; PDB: 3F1Z_I. |
| >PRK07459 single-stranded DNA-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=82.95 E-value=15 Score=33.59 Aligned_cols=84 Identities=20% Similarity=0.221 Sum_probs=51.7
Q ss_pred EEEEEEEEEe---eec--CCCceEEEEEE-------eCCEEEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCC-CC
Q psy8087 514 RVTIFGWVHR---LRR--QGKGLMFVTLR-------DGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEG-KS 580 (658)
Q Consensus 514 ~V~v~GwI~~---~R~--~Gkkl~Fi~Lr-------d~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~-~~ 580 (658)
.|.|.|||.+ +|. .|+.++=+.|- +.+..+.|++-..... .....|+.||.|.|+|.+....-. +.
T Consensus 5 ~v~LiGrL~~DPelr~t~~G~~v~~fslAv~~~~~~~~t~w~~v~~wg~~Ae-~~~~~l~KG~~V~V~G~l~~~~~~d~d 83 (121)
T PRK07459 5 SVTLVGRAGRDPEVRYFESGSVVCNLTLAVNRRSRDDEPDWFNLEIWGKTAQ-VAADYVKKGSLIGITGSLKFDRWTDRN 83 (121)
T ss_pred EEEEEEEccCCCEEEEcCCCCEEEEEEEEecccccCCCceEEEEEEehHHHH-HHHHHcCCCCEEEEEEEEEecceEcCC
Confidence 4677777766 343 33333333332 2344577777653221 234569999999999999865321 11
Q ss_pred ---CCCceEEEEEEEEEEecC
Q psy8087 581 ---APGGHELKVDYWEVVGLA 598 (658)
Q Consensus 581 ---~~g~~El~~~~i~vls~~ 598 (658)
.....||.+++++.|++.
T Consensus 84 ~G~~r~~~ei~a~~i~~L~~k 104 (121)
T PRK07459 84 TGEDRSKPVIRVDRLELLGSK 104 (121)
T ss_pred CCeEEEEEEEEEeEEEECcCC
Confidence 123489999999999754
|
|
| >PRK06826 dnaE DNA polymerase III DnaE; Reviewed | Back alignment and domain information |
|---|
Probab=82.29 E-value=4 Score=51.08 Aligned_cols=64 Identities=19% Similarity=0.205 Sum_probs=51.0
Q ss_pred CCcEEEEeEEeecceec----CCCeEEEEEEcCCeEEEEEEecccchhhhhhcCCCccEEEEEEEeEeC
Q psy8087 69 IITNINIPAIPGPPAIP----GKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKV 133 (658)
Q Consensus 69 ~~~~v~~~Grv~~~r~~----gk~l~Fi~LrD~~~~iQvv~~~~~~~~~~~~~l~~es~V~v~G~l~~~ 133 (658)
.+..|+|+|.|..+|+. |+.++|+.|.|.+|.+.+++..+....+. ..+..+..|.|+|.+...
T Consensus 990 ~~~~v~v~g~i~~~~~~~tk~G~~maf~~leD~~g~~e~~vfp~~~~~~~-~~l~~~~~~~v~g~v~~~ 1057 (1151)
T PRK06826 990 DGDKVIIGGIITEVKRKTTRNNEMMAFLTLEDLYGTVEVIVFPKVYEKYR-SLLNEDNIVLIKGRVSLR 1057 (1151)
T ss_pred CCcEEEEEEEEEEeEeeccCCCCeEEEEEEEECCCcEEEEECHHHHHHHH-HHhccCCEEEEEEEEEec
Confidence 46789999999887743 55599999999999999999876433222 358899999999999753
|
|
| >KOG2783|consensus | Back alignment and domain information |
|---|
Probab=82.21 E-value=0.7 Score=49.80 Aligned_cols=35 Identities=14% Similarity=0.302 Sum_probs=28.1
Q ss_pred cCCcEEEEeeeeecCCCCCccCcceeeeeeeEeecC
Q psy8087 216 ALGDVYCIAQSYRAENSRTRRHLAEYTHVEAECAFL 251 (658)
Q Consensus 216 g~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~a~~ 251 (658)
|.+.---.|-+||-..+++ +|.|=|.++|--.-|.
T Consensus 150 ~~~~flv~~DVyrrdeids-thypvfhq~eg~~~~s 184 (436)
T KOG2783|consen 150 GLDGFLVTGDVYRRDEIDS-THYPVFHQMEGVRLWS 184 (436)
T ss_pred cccccceeeeeeeeccccc-cccceeccccceeEEe
Confidence 4555566788899888876 9999999999877665
|
|
| >TIGR00344 alaS alanine--tRNA ligase | Back alignment and domain information |
|---|
Probab=82.12 E-value=13 Score=45.30 Aligned_cols=35 Identities=23% Similarity=0.206 Sum_probs=27.7
Q ss_pred CccceecchhHHHHHHhcccCcchh-hHHHHHhhhh
Q psy8087 417 PHGGYGLGLERVLCWLLNQYHVRDK-YQLIAKAQLK 451 (658)
Q Consensus 417 P~gG~GiGidRL~m~l~g~~~Irdv-i~f~~k~~lk 451 (658)
+|---|+|+|||+++|-|.+|+=|+ +..|.-..++
T Consensus 213 ~~IDTGmGLERl~~vlqg~~snydtD~f~~ii~~i~ 248 (851)
T TIGR00344 213 KNIDTGMGLERFVAVLQGVPTNYDTDIFLPLIEKIE 248 (851)
T ss_pred CeeecCcCHHHHHHHHcCCCCcchhhhHHHHHHHHH
Confidence 5667899999999999999999999 5555433333
|
The model describes alanine--tRNA ligase. This enzyme catalyzes the reaction (tRNAala + L-alanine + ATP = L-alanyl-tRNAala + pyrophosphate + AMP). |
| >PF00436 SSB: Single-strand binding protein family; InterPro: IPR000424 The Escherichia coli single-strand binding protein [] (gene ssb), also known as the helix-destabilising protein, is a protein of 177 amino acids | Back alignment and domain information |
|---|
Probab=81.88 E-value=11 Score=32.79 Aligned_cols=52 Identities=23% Similarity=0.167 Sum_probs=31.5
Q ss_pred EEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCC-C--CCCCceEEEEEEEEEE
Q psy8087 543 IQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEG-K--SAPGGHELKVDYWEVV 595 (658)
Q Consensus 543 iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~-~--~~~g~~El~~~~i~vl 595 (658)
++|++-.... ......|+.||.|.|+|.+....-. + .....++|.|++|++|
T Consensus 50 ~~v~~~g~~A-~~~~~~l~kG~~V~V~G~l~~~~~~~~~G~~~~~~~i~a~~i~fl 104 (104)
T PF00436_consen 50 INVVAWGKLA-ENVAEYLKKGDRVYVEGRLRTRTYEDKDGQKRYRVEIIADNIEFL 104 (104)
T ss_dssp EEEEEEHHHH-HHHHHH--TT-EEEEEEEEEEEEEESTTSSEEEEEEEEEEEEEE-
T ss_pred EEEEeeeecc-cccceEEcCCCEEEEEEEEEeeEEECCCCCEEEEEEEEEEEEEeC
Confidence 7777765421 2334569999999999999775411 1 1123589999999875
|
It binds tightly, as a homotetramer, to single-stranded DNA (ss-DNA) and plays an important role in DNA replication, recombination and repair. Closely related variants of SSB are encoded in the genome of a variety of large self-transmissible plasmids. SSB has also been characterised in bacteria such as Proteus mirabilis or Serratia marcescens. Eukaryotic mitochondrial proteins that bind ss-DNA and are probably involved in mitochondrial DNA replication are structurally and evolutionary related to prokaryotic SSB.; GO: 0003697 single-stranded DNA binding; PDB: 3UDG_B 1SE8_A 2CWA_A 3ULL_B 1S3O_A 2DUD_A 3AFP_A 3AFQ_A 3VDY_A 3EIV_C .... |
| >PRK13480 3'-5' exoribonuclease YhaM; Provisional | Back alignment and domain information |
|---|
Probab=81.84 E-value=15 Score=39.36 Aligned_cols=79 Identities=25% Similarity=0.317 Sum_probs=56.9
Q ss_pred CcEEEEEEEEEeee----cCCCceEEEEEEeCCEEEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCCCCCCCceEE
Q psy8087 512 DKRVTIFGWVHRLR----RQGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEGKSAPGGHEL 587 (658)
Q Consensus 512 g~~V~v~GwI~~~R----~~Gkkl~Fi~Lrd~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~El 587 (658)
|++|..-.-|.++. +.|+.-..+.|.|.+|.|.+.+=.... .....+..|++|.|+|.+..- .|.+.+
T Consensus 11 g~~v~~~~lv~~~~~~~~knG~~yl~l~l~D~tG~I~ak~W~~~~--~~~~~~~~g~vv~v~G~v~~y------~g~~Ql 82 (314)
T PRK13480 11 GEQVDHFLLIKSATKGVASNGKPFLTLILQDKSGDIEAKLWDVSP--EDEATYVPETIVHVKGDIINY------RGRKQL 82 (314)
T ss_pred CCEeeEEEEEEEceeeecCCCCeEEEEEEEcCCcEEEEEeCCCCh--hhHhhcCCCCEEEEEEEEEEE------CCcceE
Confidence 55665555555542 346567778999999999998854322 335569999999999999643 366778
Q ss_pred EEEEEEEEecC
Q psy8087 588 KVDYWEVVGLA 598 (658)
Q Consensus 588 ~~~~i~vls~~ 598 (658)
.+..+.++++.
T Consensus 83 ~i~~i~~~~~~ 93 (314)
T PRK13480 83 KVNQIRLATEE 93 (314)
T ss_pred EEEEeEECCCC
Confidence 89999887764
|
|
| >PRK06863 single-stranded DNA-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=81.56 E-value=18 Score=35.25 Aligned_cols=85 Identities=16% Similarity=0.222 Sum_probs=52.0
Q ss_pred cEEEEEEEEEe---eec--CCCceEEEEEE-e-------------CCEEEEEEEcCCccchHHhccCCCCcEEEEEEEEE
Q psy8087 513 KRVTIFGWVHR---LRR--QGKGLMFVTLR-D-------------GSGFIQCVLADILCQTEHALLLSTESSVQFRGRIE 573 (658)
Q Consensus 513 ~~V~v~GwI~~---~R~--~Gkkl~Fi~Lr-d-------------~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~ 573 (658)
.+|.|.|||.+ +|. .|+.++=+.|- + .+..+.|++-.... ......|+.||.|.|+|.+.
T Consensus 5 N~V~LiGrLg~DPElR~t~nG~~va~fsVAvn~~~~d~~~Ge~~e~t~w~~Vv~fgk~A-E~v~~~LkKGs~V~VeGrL~ 83 (168)
T PRK06863 5 NKVIIVGHLGNDPEIRTMPNGEAVANISVATSESWTDKNTGERREVTEWHRIVFYRRQA-EVAGEYLRKGSQVYVEGRLK 83 (168)
T ss_pred cEEEEEEEcCCCCEEEEcCCCCEEEEEEEEecCcccccCCCcccccceEEEEEEEhHHH-HHHHHHCCCCCEEEEEEEEE
Confidence 35778888876 454 33333323332 1 11236777665321 13456699999999999998
Q ss_pred ecCCC-CC--CCCceEEEEEEEEEEecC
Q psy8087 574 KVPEG-KS--APGGHELKVDYWEVVGLA 598 (658)
Q Consensus 574 ~~~~~-~~--~~g~~El~~~~i~vls~~ 598 (658)
...=. +. ....+||.+++|++|...
T Consensus 84 ~r~w~DkdG~~r~~~eI~a~~i~~L~~r 111 (168)
T PRK06863 84 TRKWQDQNGQDRYTTEIQGDVLQMLGGR 111 (168)
T ss_pred eCCccCCCCCEEEEEEEEEeEEEECCCC
Confidence 76421 11 123589999999998754
|
|
| >COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=81.47 E-value=1.9 Score=49.94 Aligned_cols=109 Identities=18% Similarity=0.217 Sum_probs=66.3
Q ss_pred CchHHHhhhCCcEEEcCCccccccC---CCCcc-----ceeeccCCcceeeccCHH-----HHHHHhcc--cC-CcEEEE
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV---EGGST-----LFSLNFFGEPAYLTQSSQ-----LYLETCLP--AL-GDVYCI 223 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~---eG~~~-----~F~~~~~~~~~~L~~Spq-----lylk~li~--g~-~rvfeI 223 (658)
..+|.-..+.||.||.||.|..... .|... .|.+..-+..+.|+...- .|+..+-+ -+ -|++|+
T Consensus 228 ~y~~~~~~~~Gy~~V~TP~~~~~~l~~~SGH~~~y~e~mf~~~~~~~~~~lKpmNCpgh~~ifk~~~~SYR~LP~r~~E~ 307 (589)
T COG0441 228 DYVRTKLRSYGYQEVKTPVLADLELWELSGHWDNYKEDMFLTESDDREYALKPMNCPGHILIFKSGLRSYRELPLRLAEF 307 (589)
T ss_pred HHHHHHHHhcCceEecCCeeeecccchhccchhhccccceeeccCChhheeeeccCHhHHHHHhcCCcceeccchhhhhc
Confidence 4777778889999999999953321 22211 121222123334433222 33333332 12 489999
Q ss_pred eeeeecCCCCCccC----cceeeeeeeEeecCCHHHHHHHHHHHHHHHHHH
Q psy8087 224 AQSYRAENSRTRRH----LAEYTHVEAECAFLTFDDLLDKLEDLICDTVDR 270 (658)
Q Consensus 224 ~~~FR~E~~~~~rH----l~EFt~lE~e~a~~d~~~~m~~~e~li~~i~~~ 270 (658)
|.|||+|.+.. -| .=+|||=|.-. |+..+.+.+.+.+.+..+..-
T Consensus 308 g~v~R~E~SGa-l~GL~RvR~ftqdDaHi-fc~~dQi~~E~~~~~~~i~~v 356 (589)
T COG0441 308 GYVYRYEKSGA-LHGLMRVRGFTQDDAHI-FCTPDQIKDEFKGILELILEV 356 (589)
T ss_pred ceeecccCcch-hhccccccceeecccce-eccHHHHHHHHHHHHHHHHHH
Confidence 99999998744 44 46899988755 566777777777777665543
|
|
| >PRK05672 dnaE2 error-prone DNA polymerase; Validated | Back alignment and domain information |
|---|
Probab=81.45 E-value=4.2 Score=50.47 Aligned_cols=72 Identities=18% Similarity=0.260 Sum_probs=54.3
Q ss_pred CCcEEEEeEEeecceec--CCCeEEEEEEcCCeEEEEEEecccchhhhhhcCCCccEEEEEEEeEeCCCCccceEe
Q psy8087 69 IITNINIPAIPGPPAIP--GKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEENMKVQL 142 (658)
Q Consensus 69 ~~~~v~~~Grv~~~r~~--gk~l~Fi~LrD~~~~iQvv~~~~~~~~~~~~~l~~es~V~v~G~l~~~p~~~~d~~l 142 (658)
.+..|+|+|.|..++.. -|+++|+.|.|.+|.+.+++..+..+.+. ..+..+..+.|+|.+... ++.+.+++
T Consensus 952 ~~~~v~v~g~i~~~~~~~TkkGmaf~~leD~~g~~e~~ifp~~~~~~~-~~l~~~~~~~v~g~v~~~-~~~~~~~~ 1025 (1046)
T PRK05672 952 DGRRVRVAGVVTHRQRPGTASGVTFLTLEDETGMVNVVVWPGLWERQR-REALGARLLLVRGRVQNA-EGVRHLVA 1025 (1046)
T ss_pred CCCEEEEEEEEEEEEEecCCCceEEEEEecCCCCEEEEECHHHHHHHH-HHhccCCEEEEEEEEEec-CCeEEEEE
Confidence 46779999999987664 34599999999999999999876533222 358899999999999864 33234444
|
|
| >COG5235 RFA2 Single-stranded DNA-binding replication protein A (RPA), medium (30 kD) subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=81.36 E-value=5.8 Score=39.43 Aligned_cols=66 Identities=15% Similarity=0.205 Sum_probs=48.7
Q ss_pred CcEEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccchh-hhhhcCCCccEEEEEEEeEeCCCC
Q psy8087 70 ITNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILCQT-EHALLLSTESSVQFRGRIEKVPEE 136 (658)
Q Consensus 70 ~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~~~-~~~~~l~~es~V~v~G~l~~~p~~ 136 (658)
-..|++.|||+++..+--+ +|+.|.||+|.|-|-.=...... -....+..+-.|.|.|.++.-..|
T Consensus 66 v~~V~fVGvvrni~~~ttn-~~~~iEDGTG~Ievr~W~~~~~~~e~~~d~~~~~yvkV~G~lk~F~GK 132 (258)
T COG5235 66 VTNVQFVGVVRNIKTSTTN-SMFVIEDGTGSIEVRFWPGNSYEEEQCKDLEEQNYVKVNGSLKTFNGK 132 (258)
T ss_pred EeeEEEEEEEEeeeecccc-eEEEEecCCceEEEEecCCCchHHHhccccccccEEEEecceeeeCCe
Confidence 3568999999999988765 88899999999988765433211 112245667799999999876554
|
|
| >PRK06920 dnaE DNA polymerase III DnaE; Reviewed | Back alignment and domain information |
|---|
Probab=81.25 E-value=3.2 Score=51.63 Aligned_cols=64 Identities=16% Similarity=0.062 Sum_probs=51.3
Q ss_pred CCcEEEEeEEeeccee----cCCCeEEEEEEcCCeEEEEEEecccchhhhhhcCCCccEEEEEEEeEeC
Q psy8087 69 IITNINIPAIPGPPAI----PGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKV 133 (658)
Q Consensus 69 ~~~~v~~~Grv~~~r~----~gk~l~Fi~LrD~~~~iQvv~~~~~~~~~~~~~l~~es~V~v~G~l~~~ 133 (658)
.+..|+|+|.|..+|. .|+.++|+.|.|.+|.+.+++..+....+. ..+..+..|.|+|.+...
T Consensus 942 ~~~~v~v~g~i~~~~~~~tk~g~~maf~~leD~tg~~e~~vFp~~y~~~~-~~l~~~~~~~v~G~v~~~ 1009 (1107)
T PRK06920 942 KKKVQRAIVYITSVKVIRTKKGQKMAFITFCDQNDEMEAVVFPETYIHFS-DKLQEGAIVLVDGTIELR 1009 (1107)
T ss_pred CCCEEEEEEEEEEeEeecCCCCCeEEEEEEeeCCCcEEEEECHHHHHHHH-HHhccCCEEEEEEEEEec
Confidence 3568999999988753 366799999999999999999876433322 358899999999999764
|
|
| >PRK10917 ATP-dependent DNA helicase RecG; Provisional | Back alignment and domain information |
|---|
Probab=81.07 E-value=4.9 Score=47.76 Aligned_cols=64 Identities=14% Similarity=0.152 Sum_probs=48.7
Q ss_pred cCCcEEEEeEEeecceec--CCCeEEEEEEcCCeEEEEEEecccchhhhhhcCCCccEEEEEEEeEe
Q psy8087 68 YIITNINIPAIPGPPAIP--GKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEK 132 (658)
Q Consensus 68 ~~~~~v~~~Grv~~~r~~--gk~l~Fi~LrD~~~~iQvv~~~~~~~~~~~~~l~~es~V~v~G~l~~ 132 (658)
..|+.|+|.|+|.+.... ++.+.-+.+.|++|.+++++-.-. ..|-...++.|..+.|+|++..
T Consensus 57 ~~g~~vtv~g~V~~~~~~~~~~~~~~v~l~D~tg~i~l~~F~~n-~~~~~~~l~~G~~~~v~Gkv~~ 122 (681)
T PRK10917 57 RPGEKVTVEGEVLSAEVVFGKRRRLTVTVSDGTGNLTLRFFNFN-QPYLKKQLKVGKRVAVYGKVKR 122 (681)
T ss_pred CCCCEEEEEEEEEEEEEccCCceEEEEEEEECCeEEEEEEEccC-cHHHHhhCCCCCEEEEEEEEEe
Confidence 457889999998875432 455788899999999999887311 1233356999999999999986
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 658 | ||||
| 2xgt_A | 435 | Asparaginyl-Trna Synthetase From Brugia Malayi Comp | 1e-114 | ||
| 2xgt_A | 435 | Asparaginyl-Trna Synthetase From Brugia Malayi Comp | 1e-43 | ||
| 2xti_A | 437 | Asparaginyl-Trna Synthetase From Brugia Malayi Comp | 1e-114 | ||
| 2xti_A | 437 | Asparaginyl-Trna Synthetase From Brugia Malayi Comp | 1e-43 | ||
| 3m4p_A | 456 | Entamoeba Histolytica Asparaginyl-Trna Synthetase ( | 1e-104 | ||
| 3m4p_A | 456 | Entamoeba Histolytica Asparaginyl-Trna Synthetase ( | 1e-21 | ||
| 1x54_A | 434 | Crystal Structure Of Asparaginyl-trna Synthetase Fr | 3e-54 | ||
| 1x54_A | 434 | Crystal Structure Of Asparaginyl-trna Synthetase Fr | 4e-09 | ||
| 1wyd_A | 429 | Crystal Structure Of Aspartyl-Trna Synthetase From | 4e-35 | ||
| 1n9w_A | 422 | Crystal Structure Of The Non-Discriminating And Arc | 2e-32 | ||
| 1n9w_A | 422 | Crystal Structure Of The Non-Discriminating And Arc | 1e-08 | ||
| 3nel_A | 438 | Aspartyl-Trna Synthetase Complexed With Aspartic Ac | 4e-32 | ||
| 1b8a_A | 438 | Aspartyl-trna Synthetase Length = 438 | 4e-32 | ||
| 3i7f_A | 548 | Aspartyl Trna Synthetase From Entamoeba Histolytica | 7e-32 | ||
| 1eov_A | 487 | Free Aspartyl-Trna Synthetase (Asprs) (E.C. 6.1.1.1 | 1e-25 | ||
| 1eov_A | 487 | Free Aspartyl-Trna Synthetase (Asprs) (E.C. 6.1.1.1 | 1e-05 | ||
| 1asy_A | 490 | Class Ii Aminoacyl Transfer Rna Synthetases: Crysta | 1e-25 | ||
| 1asy_A | 490 | Class Ii Aminoacyl Transfer Rna Synthetases: Crysta | 2e-05 | ||
| 3e9h_A | 493 | Lysyl-Trna Synthetase From Bacillus Stearothermophi | 5e-09 | ||
| 3p8t_A | 294 | Crystal Structure Of The Archaeal Asparagine Synthe | 2e-07 | ||
| 1bbu_A | 504 | Lysyl-Trna Synthetase (Lyss) Complexed With Lysine | 4e-07 | ||
| 1nnh_A | 294 | Hypothetical Protein From Pyrococcus Furiosus Pfu-1 | 6e-07 | ||
| 1lyl_A | 504 | Lysyl-Trna Synthetase (Lysu) (E.C.6.1.1.6) Complexe | 1e-06 | ||
| 1eqr_A | 590 | Crystal Structure Of Free Aspartyl-Trna Synthetase | 2e-04 | ||
| 1c0a_A | 585 | Crystal Structure Of The E. Coli Aspartyl-Trna Synt | 2e-04 | ||
| 4ex5_A | 529 | Crystal Structure Of Lysyl-Trna Synthetase Lysrs Fr | 4e-04 | ||
| 4ah6_A | 617 | Human Mitochondrial Aspartyl-Trna Synthetase Length | 4e-04 |
| >pdb|2XGT|A Chain A, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed With The Sulphamoyl Analogue Of Asparaginyl-Adenylate Length = 435 | Back alignment and structure |
|
| >pdb|2XGT|A Chain A, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed With The Sulphamoyl Analogue Of Asparaginyl-Adenylate Length = 435 | Back alignment and structure |
|
| >pdb|2XTI|A Chain A, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed With Atp:mg And L-Asp-Beta-Noh Adenylate:ppi:mg Length = 437 | Back alignment and structure |
|
| >pdb|2XTI|A Chain A, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed With Atp:mg And L-Asp-Beta-Noh Adenylate:ppi:mg Length = 437 | Back alignment and structure |
|
| >pdb|3M4P|A Chain A, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs) In Complex With Asparaginyl-Adenylate Length = 456 | Back alignment and structure |
|
| >pdb|3M4P|A Chain A, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs) In Complex With Asparaginyl-Adenylate Length = 456 | Back alignment and structure |
|
| >pdb|1X54|A Chain A, Crystal Structure Of Asparaginyl-trna Synthetase From Pyrococcus Horikoshii Complexed With Asparaginyl-adenylate Length = 434 | Back alignment and structure |
|
| >pdb|1X54|A Chain A, Crystal Structure Of Asparaginyl-trna Synthetase From Pyrococcus Horikoshii Complexed With Asparaginyl-adenylate Length = 434 | Back alignment and structure |
|
| >pdb|1WYD|A Chain A, Crystal Structure Of Aspartyl-Trna Synthetase From Sulfolobus Tokodaii Length = 429 | Back alignment and structure |
|
| >pdb|1N9W|A Chain A, Crystal Structure Of The Non-Discriminating And Archaeal- Type Aspartyl-Trna Synthetase From Thermus Thermophilus Length = 422 | Back alignment and structure |
|
| >pdb|1N9W|A Chain A, Crystal Structure Of The Non-Discriminating And Archaeal- Type Aspartyl-Trna Synthetase From Thermus Thermophilus Length = 422 | Back alignment and structure |
|
| >pdb|3NEL|A Chain A, Aspartyl-Trna Synthetase Complexed With Aspartic Acid Length = 438 | Back alignment and structure |
|
| >pdb|1B8A|A Chain A, Aspartyl-trna Synthetase Length = 438 | Back alignment and structure |
|
| >pdb|3I7F|A Chain A, Aspartyl Trna Synthetase From Entamoeba Histolytica Length = 548 | Back alignment and structure |
|
| >pdb|1EOV|A Chain A, Free Aspartyl-Trna Synthetase (Asprs) (E.C. 6.1.1.12) From Yeast Length = 487 | Back alignment and structure |
|
| >pdb|1EOV|A Chain A, Free Aspartyl-Trna Synthetase (Asprs) (E.C. 6.1.1.12) From Yeast Length = 487 | Back alignment and structure |
|
| >pdb|1ASY|A Chain A, Class Ii Aminoacyl Transfer Rna Synthetases: Crystal Structure Of Yeast Aspartyl-Trna Synthetase Complexed With Trna Asp Length = 490 | Back alignment and structure |
|
| >pdb|1ASY|A Chain A, Class Ii Aminoacyl Transfer Rna Synthetases: Crystal Structure Of Yeast Aspartyl-Trna Synthetase Complexed With Trna Asp Length = 490 | Back alignment and structure |
|
| >pdb|3E9H|A Chain A, Lysyl-Trna Synthetase From Bacillus Stearothermophilus Complexed With L-Lysylsulfamoyl Adenosine Length = 493 | Back alignment and structure |
|
| >pdb|3P8T|A Chain A, Crystal Structure Of The Archaeal Asparagine Synthetase A Length = 294 | Back alignment and structure |
|
| >pdb|1BBU|A Chain A, Lysyl-Trna Synthetase (Lyss) Complexed With Lysine Length = 504 | Back alignment and structure |
|
| >pdb|1NNH|A Chain A, Hypothetical Protein From Pyrococcus Furiosus Pfu-1801964 Length = 294 | Back alignment and structure |
|
| >pdb|1LYL|A Chain A, Lysyl-Trna Synthetase (Lysu) (E.C.6.1.1.6) Complexed With Lysine Length = 504 | Back alignment and structure |
|
| >pdb|1EQR|A Chain A, Crystal Structure Of Free Aspartyl-Trna Synthetase From Escherichia Coli Length = 590 | Back alignment and structure |
|
| >pdb|1C0A|A Chain A, Crystal Structure Of The E. Coli Aspartyl-Trna Synthetase : Trnaasp : Aspartyl-Adenylate Complex Length = 585 | Back alignment and structure |
|
| >pdb|4EX5|A Chain A, Crystal Structure Of Lysyl-Trna Synthetase Lysrs From Burkholderia Thailandensis Bound To Lysine Length = 529 | Back alignment and structure |
|
| >pdb|4AH6|A Chain A, Human Mitochondrial Aspartyl-Trna Synthetase Length = 617 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A* Length = 435 | Back alignment and structure |
|---|
Score = 514 bits (1327), Expect = e-179
Identities = 205/398 (51%), Positives = 261/398 (65%), Gaps = 45/398 (11%)
Query: 86 GKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEENMKVQL--I 143
GK LMF LRDG+GF+Q +L D LCQT AL ++TE +V+ G I++VPE +
Sbjct: 27 GKSLMFFILRDGTGFLQVLLMDKLCQTYDALTVNTECTVEIYGAIKEVPEGKEAPNGHEL 86
Query: 144 HPSSYAIVWLGDLKQGGYPP--------------------------------EVSLA--- 168
+ I+ G+ GG + A
Sbjct: 87 IADFWKII--GNAPPGGIDNVLNEEASVDKMLDNRHLVIRGENAAALLRLRAAATRAMRE 144
Query: 169 ----NGIAKVTPPTLVQTQVEGGSTLFSLNFFGEPAYLTQSSQLYLETCLPALGDVYCIA 224
G +V PPTLVQTQVEGGSTLF+L++FGE ++LTQSSQLYLETC+P LGDV+CIA
Sbjct: 145 HFYNAGYVEVAPPTLVQTQVEGGSTLFNLDYFGEQSFLTQSSQLYLETCIPTLGDVFCIA 204
Query: 225 QSYRAENSRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATH--GDLVRQM 282
QSYRAE SRTRRHLAEY HVEAEC F+T DDL++K+E+L+CDTVDR++A L+ +
Sbjct: 205 QSYRAEKSRTRRHLAEYAHVEAECPFITLDDLMEKIEELVCDTVDRLLADEEAKKLLEHI 264
Query: 283 NPNFEPPARPFLRMNYADAIEYLRKHEIRKPDNTEYEFGEDIPEMPERKMTDQINRPIML 342
NP F+PP RPFLRM Y DAI++L++H + + +GEDI E ER MTD IN+PI+L
Sbjct: 265 NPKFQPPERPFLRMEYKDAIKWLQEHNVENEFGNTFTYGEDIAEAAERFMTDTINKPILL 324
Query: 343 CRFPADIKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGIDPA 402
RFP++IK+FYM + ++ LTESVD+L P VGE++GGSMRIW +EL +K IDP
Sbjct: 325 NRFPSEIKAFYMQRDAQDNTLTESVDLLMPGVGEIVGGSMRIWKFDELSKAFKNVEIDPK 384
Query: 403 PYYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRD 440
PYYWY DQR YG+ PHGGYGLGLER +CWL N H+RD
Sbjct: 385 PYYWYLDQRLYGTCPHGGYGLGLERFICWLTNTNHIRD 422
|
| >2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A* Length = 435 | Back alignment and structure |
|---|
Score = 212 bits (541), Expect = 4e-62
Identities = 84/155 (54%), Positives = 114/155 (73%)
Query: 502 IKIKDGEKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLS 561
+KI+D K+R++RV I GW+HR+RRQGK LMF LRDG+GF+Q +L D LCQT AL ++
Sbjct: 1 VKIRDLVKHRNERVCIKGWIHRMRRQGKSLMFFILRDGTGFLQVLLMDKLCQTYDALTVN 60
Query: 562 TESSVQFRGRIEKVPEGKSAPGGHELKVDYWEVVGLAPAGGADAILNEEALPDVQLDNRH 621
TE +V+ G I++VPEGK AP GHEL D+W+++G AP GG D +LNEEA D LDNRH
Sbjct: 61 TECTVEIYGAIKEVPEGKEAPNGHELIADFWKIIGNAPPGGIDNVLNEEASVDKMLDNRH 120
Query: 622 IMIRGENTSRVLLMRSVLLQALRAHFADRNYTEVN 656
++IRGEN + +L +R+ +A+R HF + Y EV
Sbjct: 121 LVIRGENAAALLRLRAAATRAMREHFYNAGYVEVA 155
|
| >3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A Length = 456 | Back alignment and structure |
|---|
Score = 510 bits (1316), Expect = e-177
Identities = 188/399 (47%), Positives = 247/399 (61%), Gaps = 45/399 (11%)
Query: 86 GKGLMFVTLRDGSGFIQCVL-ADILCQTEHALLLSTESSVQFRGRIEKVPEENMKVQLIH 144
K L+FV LRDGSG+ QCV+ LC+ E LL+ E S++ GR+ +N ++
Sbjct: 46 RKTLIFVELRDGSGYCQCVIFGKELCEPEKVKLLTRECSLEITGRLNAYAGKNHPPEIAD 105
Query: 145 PSSY-----AIVWLGDLKQGGYPP-------------------------------EVSLA 168
+ +G+ E+
Sbjct: 106 ILNLEMQVTEWKVIGESPIDLENIINKDSSIPQKMQNRHIVIRSEHTQQVLQLRSEIQWY 165
Query: 169 -------NGIAKVTPPTLVQTQVEGGSTLFSLNFFGEPAYLTQSSQLYLETCLPALGDVY 221
N ++ PPT+V+TQ EGGSTLF L +F EPAYLTQSSQLYLE+ + +LG +
Sbjct: 166 FRKYYHDNHFTEIQPPTIVKTQCEGGSTLFKLQYFNEPAYLTQSSQLYLESVIASLGKSF 225
Query: 222 CIAQSYRAENSRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGDLVRQ 281
C+ SYRAE SRT RHLAEY H+EAE F++F+DLL+ LEDL+C +D VMA HGD +R+
Sbjct: 226 CMLSSYRAEQSRTVRHLAEYLHLEAELPFISFEDLLNHLEDLVCTVIDNVMAVHGDKIRK 285
Query: 282 MNPNFEPPARPFLRMNYADAIEYLRKHEIRKPDNTEYEFGEDIPEMPERKMTDQINRPIM 341
MNP+ + P RPF RM YADAI+Y H I D +E+GEDI E PER+MTD+I PI
Sbjct: 286 MNPHLKLPTRPFKRMTYADAIKYCNDHGILNKDK-PFEYGEDISEKPERQMTDEIGCPIF 344
Query: 342 LCRFPADIKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGIDP 401
+ FP+ +K+FYMSK P +P LTESVD+L P VGE++GGSMRIW+ +EL+ YK G++P
Sbjct: 345 MIHFPSKMKAFYMSKVPGHPDLTESVDLLMPGVGEIVGGSMRIWNYDELMGAYKANGLNP 404
Query: 402 APYYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRD 440
PYYWYT QRKYGS PHGGYGLG+ER++ WLL + H+R
Sbjct: 405 DPYYWYTQQRKYGSCPHGGYGLGVERLVMWLLGEDHIRK 443
|
| >3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A Length = 456 | Back alignment and structure |
|---|
Score = 207 bits (529), Expect = 3e-60
Identities = 57/177 (32%), Positives = 94/177 (53%), Gaps = 9/177 (5%)
Query: 488 IVLKEDPSLPPAVRI--KIKDGEKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQC 545
++ E + P I I+D K VT GW + +R+ K L+FV LRDGSG+ QC
Sbjct: 4 SMMTEATTTPVETPIVCNIRDAAGLEGKLVTFKGWAYHIRKARKTLIFVELRDGSGYCQC 63
Query: 546 VL-ADILCQTEHALLLSTESSVQFRGRIEKVPEGKSA-----PGGHELKVDYWEVVGLAP 599
V+ LC+ E LL+ E S++ GR+ E++V W+V+G +P
Sbjct: 64 VIFGKELCEPEKVKLLTRECSLEITGRLNAYAGKNHPPEIADILNLEMQVTEWKVIGESP 123
Query: 600 AGGADAILNEEALPDVQLDNRHIMIRGENTSRVLLMRSVLLQALRAHFADRNYTEVN 656
+ I+N+++ ++ NRHI+IR E+T +VL +RS + R ++ D ++TE+
Sbjct: 124 I-DLENIINKDSSIPQKMQNRHIVIRSEHTQQVLQLRSEIQWYFRKYYHDNHFTEIQ 179
|
| >1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A Length = 434 | Back alignment and structure |
|---|
Score = 472 bits (1218), Expect = e-162
Identities = 127/399 (31%), Positives = 196/399 (49%), Gaps = 54/399 (13%)
Query: 87 KGLMFVTLRDGSGFIQCVLADILCQTE---HALLLSTESSVQFRGRIEKVPEENMKVQLI 143
+F+ +RD +G +Q V+A + E A L ESSV G ++ + +
Sbjct: 32 GKKIFLWIRDSTGIVQAVVAKNVVGEETFEKAKKLGRESSVIVEGIVKADERAPGGAE-V 90
Query: 144 HPSSYAIVWLGDLKQGGYPP-------------------------------EVSLA---- 168
H + + + + P + +A
Sbjct: 91 HVEKLEV--IQAVSEFPIPENPEQASPELLLDYRHLHIRTPKASAIMKVKETLIMAAREW 148
Query: 169 ---NGIAKVTPPTLVQTQVEGGSTLFSLNFFGEPAYLTQSSQLYLETCLPALGDVYCIAQ 225
+G +V PP LV VEGG+TLF L +F + AYL+QS+QLYLE + L V+ +
Sbjct: 149 LLKDGWHEVFPPILVTGAVEGGATLFKLKYFDKYAYLSQSAQLYLEAAIFGLEKVWSLTP 208
Query: 226 SYRAENSRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGD---LVRQM 282
S+RAE SRTRRHL E+ H+E E A++ D++ E+L+ V R + + R
Sbjct: 209 SFRAEKSRTRRHLTEFWHLELEAAWMDLWDIMKVEEELVSYMVQRTLELRKKEIEMFRDD 268
Query: 283 NPNFEPPARPFLRMNYADAIEYLRKHEIRKPDNTEYEFGEDIPEMPERKMTDQINRPIML 342
+ PF R++Y +AI+ L+ E+G+D+ ER +T++ +RP +
Sbjct: 269 LTTLKNTEPPFPRISYDEAIDILQSK------GVNVEWGDDLGADEERVLTEEFDRPFFV 322
Query: 343 CRFPADIKSFYMSKCPENPALTESVDVLFPN-VGEVIGGSMRIWDPEELLAGYKREGIDP 401
+P IK+FYM + P +P + D+L P GE+IGGS R D ++LL EG+DP
Sbjct: 323 YGYPKHIKAFYMKEDPNDPRKVLASDMLAPEGYGEIIGGSQREDDYDKLLNRILEEGMDP 382
Query: 402 APYYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRD 440
Y WY D R+YGS PH G+GLG+ER++ W+L H+R
Sbjct: 383 KDYEWYLDLRRYGSVPHSGFGLGVERLVAWVLKLDHIRW 421
|
| >1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A Length = 434 | Back alignment and structure |
|---|
Score = 170 bits (433), Expect = 7e-47
Identities = 47/160 (29%), Positives = 76/160 (47%), Gaps = 9/160 (5%)
Query: 501 RIKIKD-GEKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILCQTE---H 556
++ ++ + K+V + GWV+ R GK +F+ +RD +G +Q V+A + E
Sbjct: 4 KVYCQEVKPELDGKKVRLAGWVYTNMRVGK-KIFLWIRDSTGIVQAVVAKNVVGEETFEK 62
Query: 557 ALLLSTESSVQFRGRIEKVPEGKSAPGGHELKVDYWEVVGLAPAGGADAILNEEALPDVQ 616
A L ESSV G V + APGG E+ V+ EV+ E+A P++
Sbjct: 63 AKKLGRESSVIVEG---IVKADERAPGGAEVHVEKLEVIQAVSEFPIP-ENPEQASPELL 118
Query: 617 LDNRHIMIRGENTSRVLLMRSVLLQALRAHFADRNYTEVN 656
LD RH+ IR S ++ ++ L+ A R + EV
Sbjct: 119 LDYRHLHIRTPKASAIMKVKETLIMAAREWLLKDGWHEVF 158
|
| >1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii} Length = 429 | Back alignment and structure |
|---|
Score = 450 bits (1159), Expect = e-154
Identities = 98/396 (24%), Positives = 173/396 (43%), Gaps = 53/396 (13%)
Query: 87 KGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEENMKVQLIHPS 146
G F+ LRD +G Q V+ + L+ ES +Q RG ++ ++ +H
Sbjct: 32 GGKKFIILRDKTGLGQVVVDKNSSAFGISQELTQESVIQVRGIVKADKRAPRGIE-LHAE 90
Query: 147 SYAIVWLGDLKQGGYPPEVSLA-------------------------------------- 168
++ P +VS
Sbjct: 91 EITLLSKAK---APLPLDVSGKVKADIDTRLRERVLDLRRQEMQAVIKIQSLALKAFRET 147
Query: 169 ---NGIAKVTPPTLVQTQVEGGSTLFSLNFFGEPAYLTQSSQLYLETCLPALGDVYCIAQ 225
G ++ P ++ + EGG+ LF + +FG+ A+L QS QLY E + V+ +A
Sbjct: 148 LYKEGFIEIFTPKIIASATEGGAQLFPVIYFGKEAFLAQSPQLYKELMAGVVERVFEVAP 207
Query: 226 SYRAENSRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGDLVRQMNPN 285
++RAE S T HLAE+ ++ E AF ++D++ LE ++ + V + + ++ +N
Sbjct: 208 AWRAEESDTPFHLAEFISMDVEMAFADYNDVMQLLEKILHNIVKTIKEEGKEELKILNYE 267
Query: 286 FEPPARPFLRMNYADAIEYLRKHEIRKPDNTEYEFGEDIPEMPERKMTDQINRPI-MLCR 344
P R+ Y +AIE LR +FG+DI R + +++ + +
Sbjct: 268 PPEVKIPIKRLKYTEAIEILRSK------GYNIKFGDDIGTPELRILNEELKEDLYFIVD 321
Query: 345 FPADIKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGIDPAPY 404
+P+D + FY ENP L+ES D+++ E++ GS R E L K++G+ P +
Sbjct: 322 WPSDARPFYTKSKSENPELSESFDLIYKF-LEIVSGSTRNHKREVLEEALKKKGLKPESF 380
Query: 405 YWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRD 440
++ YG PH G+G+GL R++ L V++
Sbjct: 381 EFFLKWFDYGMPPHAGFGMGLARLMVMLTGIQSVKE 416
|
| >1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii} Length = 429 | Back alignment and structure |
|---|
Score = 168 bits (428), Expect = 3e-46
Identities = 46/158 (29%), Positives = 68/158 (43%), Gaps = 6/158 (3%)
Query: 501 RIKIKD-GEKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILCQTEHALL 559
I D +Y K V GWVH LR G F+ LRD +G Q V+ +
Sbjct: 4 SHFIADVTPEYDGKEVIWAGWVHLLRDLGG-KKFIILRDKTGLGQVVVDKNSSAFGISQE 62
Query: 560 LSTESSVQFRGRIEKVPEGKSAPGGHELKVDYWEVVGLAPAG-GADAILNEEALPDVQLD 618
L+ ES +Q RG V K AP G EL + ++ A A D +A D +L
Sbjct: 63 LTQESVIQVRG---IVKADKRAPRGIELHAEEITLLSKAKAPLPLDVSGKVKADIDTRLR 119
Query: 619 NRHIMIRGENTSRVLLMRSVLLQALRAHFADRNYTEVN 656
R + +R + V+ ++S+ L+A R + E+
Sbjct: 120 ERVLDLRRQEMQAVIKIQSLALKAFRETLYKEGFIEIF 157
|
| >1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A* Length = 422 | Back alignment and structure |
|---|
Score = 425 bits (1095), Expect = e-144
Identities = 101/402 (25%), Positives = 168/402 (41%), Gaps = 69/402 (17%)
Query: 87 KGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEENMKVQLIHPS 146
+ F+ LRD SG +Q V L ES+++ RG + + + ++ +
Sbjct: 29 GRIQFLLLRDRSGVVQVVTGG-------LKLPLPESALRVRGLVVENAKAPGGLE-VQAK 80
Query: 147 SYAIVWLGDLKQGGYPPEVSLA-------------------------------------- 168
++ P E+
Sbjct: 81 EVEVLSPAL---EPTPVEIPKEEWRANPDTLLEYRYVTLRGEKARAPLKVQAALVRGFRR 137
Query: 169 ----NGIAKVTPPTLVQTQVEGGSTLFSLNFFGEPAYLTQSSQLYLETCLPALGDVYCIA 224
++ P +V+ EGGS LF +++F + AYL QS QLY + + VY +A
Sbjct: 138 YLDRQDFTEIFTPKVVRAGAEGGSGLFGVDYFEKRAYLAQSPQLYKQIMVGVFERVYEVA 197
Query: 225 QSYRAENSRTRRHLAEYTHVEAECAFLT-FDDLLDKLEDLICDTVDRVMATHGDLVRQMN 283
+R E T RHL EY ++ E F+ +DL+ E L+ + ++ + T GD +R +
Sbjct: 198 PVWRMEEHHTSRHLNEYLSLDVEMGFIADEEDLMRLEEALLAEMLEEALNTAGDEIRLLG 257
Query: 284 PNFEPPARPFLRMNYADAIEYLRKHEIRKPDNTEYEFGEDIPEMPERKMTDQINRP---- 339
+ + R+ +A+A L++ Y G+D+ E ER + +
Sbjct: 258 ATWPSFPQDIPRLTHAEAKRILKEE-------LGYPVGQDLSEEAERLLGEYAKERWGSD 310
Query: 340 -IMLCRFPADIKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREG 398
+ + R+P ++ FY PE T S D+LF + E+ G RI EELL K +G
Sbjct: 311 WLFVTRYPRSVRPFYT--YPEEDGTTRSFDLLFRGL-EITSGGQRIHRYEELLESLKAKG 367
Query: 399 IDPAPYYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRD 440
+DP ++ Y + KYG PHGG+ +G ER+ LL +VR
Sbjct: 368 MDPEAFHGYLEVFKYGMPPHGGFAIGAERLTQKLLGLPNVRY 409
|
| >1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A* Length = 422 | Back alignment and structure |
|---|
Score = 170 bits (432), Expect = 7e-47
Identities = 45/159 (28%), Positives = 79/159 (49%), Gaps = 13/159 (8%)
Query: 500 VRIKIKDGEKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILCQTEHALL 559
+R+ ++D + + + V + G++H R G+ + F+ LRD SG +Q V L
Sbjct: 1 MRVLVRDLKAHVGQEVELLGFLHWRRDLGR-IQFLLLRDRSGVVQVVTGG-------LKL 52
Query: 560 LSTESSVQFRGRIEKVPEGKSAPGGHELKVDYWEVVGLAPAGGADAILNE--EALPDVQL 617
ES+++ RG V E APGG E++ EV+ A I E A PD L
Sbjct: 53 PLPESALRVRG---LVVENAKAPGGLEVQAKEVEVLSPALEPTPVEIPKEEWRANPDTLL 109
Query: 618 DNRHIMIRGENTSRVLLMRSVLLQALRAHFADRNYTEVN 656
+ R++ +RGE L +++ L++ R + +++TE+
Sbjct: 110 EYRYVTLRGEKARAPLKVQAALVRGFRRYLDRQDFTEIF 148
|
| >1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A* Length = 487 | Back alignment and structure |
|---|
Score = 393 bits (1011), Expect = e-131
Identities = 111/430 (25%), Positives = 165/430 (38%), Gaps = 82/430 (19%)
Query: 86 GKGLMFVTLRDGSGFIQCVLADILCQT------EHALLLSTESSVQFRGRIEKVPEENMK 139
G L F+TLR + IQ ++ T + A L+ ES V RG ++KV E
Sbjct: 52 GATLAFLTLRQQASLIQGLVKANKEGTISKNMVKWAGSLNLESIVLVRGIVKKVDEPIKS 111
Query: 140 VQL----IHPSSYAIVWLG------DLKQGGYPPEVSLANGIAKVTPPT----------- 178
+ IH + + L+ + A G+ V T
Sbjct: 112 ATVQNLEIHITKIYTISETPEALPILLEDASRSEAEAEAAGLPVVNLDTRLDYRVIDLRT 171
Query: 179 ---------------------------------LVQTQVEGGSTLFSLNFFGEPAYLTQS 205
L+ EGGS++F + +F AYL QS
Sbjct: 172 VTNQAIFRIQAGVCELFREYLATKKFTEVHTPKLLGAPSEGGSSVFEVTYFKGKAYLAQS 231
Query: 206 SQLYLETCLPA-LGDVYCIAQSYRAENSRTRRHLAEYTHVEAECAFLT-FDDLLDKLEDL 263
Q + + A VY I +RAENS T RH+ E+T ++ E AF + ++LD L +L
Sbjct: 232 PQFNKQQLIVADFERVYEIGPVFRAENSNTHRHMTEFTGLDMEMAFEEHYHEVLDTLSEL 291
Query: 264 ICDTVDRVMATHGD---LVRQMNPNFE---PPARPFLRMNYADAIEYLRKHEIRKPDNTE 317
+ LVR+ P E P +R+ Y + IE LR E
Sbjct: 292 FVFIFSELPKRFAHEIELVRKQYPVEEFKLPKDGKMVRLTYKEGIEMLRAA------GKE 345
Query: 318 YEFGEDIPEMPERKMTDQINRP-----IMLCRFPADIKSFYMSKCPENPALTESVDVLFP 372
ED+ E+ + + +L +FP +I+ FY P NP + S D
Sbjct: 346 IGDFEDLSTENEKFLGKLVRDKYDTDFYILDKFPLEIRPFYTMPDPANPKYSNSYDFFMR 405
Query: 373 NVGEVIGGSMRIWDPEELLAGYKREGIDPAP--YYWYTDQRKYGSTPHGGYGLGLERVLC 430
E++ G+ RI D L K G+ P Y D YG PH G G+GLERV+
Sbjct: 406 G-EEILSGAQRIHDHALLQERMKAHGLSPEDPGLKDYCDGFSYGCPPHAGGGIGLERVVM 464
Query: 431 WLLNQYHVRD 440
+ L+ ++R
Sbjct: 465 FYLDLKNIRR 474
|
| >1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A* Length = 487 | Back alignment and structure |
|---|
Score = 167 bits (425), Expect = 2e-45
Identities = 48/193 (24%), Positives = 80/193 (41%), Gaps = 23/193 (11%)
Query: 487 KIVLKEDPSLPPAVRIKIKD--GEKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQ 544
++ D R+K D K DK V VH R+QG L F+TLR + IQ
Sbjct: 9 PLIQSRDSDRTGQKRVKFVDLDEAKDSDKEVLFRARVHNTRQQGATLAFLTLRQQASLIQ 68
Query: 545 CVLADILCQT------EHALLLSTESSVQFRGRIEKVPEGKSAPGGHELKVDYWEVVGLA 598
++ T + A L+ ES V RG ++KV E + L++ ++ ++
Sbjct: 69 GLVKANKEGTISKNMVKWAGSLNLESIVLVRGIVKKVDEPIKSATVQNLEIHITKIYTIS 128
Query: 599 PAGGADAILNEEA---------------LPDVQLDNRHIMIRGENTSRVLLMRSVLLQAL 643
A IL E+A D +LD R I +R + +++ + +
Sbjct: 129 ETPEALPILLEDASRSEAEAEAAGLPVVNLDTRLDYRVIDLRTVTNQAIFRIQAGVCELF 188
Query: 644 RAHFADRNYTEVN 656
R + A + +TEV+
Sbjct: 189 REYLATKKFTEVH 201
|
| >3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica} Length = 548 | Back alignment and structure |
|---|
Score = 388 bits (998), Expect = e-128
Identities = 87/283 (30%), Positives = 135/283 (47%), Gaps = 17/283 (6%)
Query: 168 ANGIAKVTPPTLVQTQVEGGSTLFSLNFFGEPAYLTQSSQLYLETCLPA-LGDVYCIAQS 226
+ ++ P L+ EGGS +F + +F AYL QS QLY + + V+ +
Sbjct: 260 SQKFVEIHTPKLIGCSSEGGSNIFEVKYFDRKAYLAQSPQLYKQMAIMGDFRKVFEVGPV 319
Query: 227 YRAENSRTRRHLAEYTHVEAECAFL-TFDDLLDKLEDLICDTVDRVMATHGD---LVRQM 282
+RAENS TRRHL E+ ++ E + + + +D +E L D + D ++R+
Sbjct: 320 FRAENSNTRRHLTEFEGLDIEMEIVENYHECIDVMEKLFTFIFDEIPKRFPDELKVIRKQ 379
Query: 283 NPNFEPPARPFLRMNYADAIEYLRKHEIRKPDNTEYEFGEDIPEMPERKMTDQINR---- 338
P + RPFLR+ Y +AIE LR +D E K+ + I
Sbjct: 380 YPFEDLIYRPFLRLTYKEAIEMLRAS------GETIGDYDDFTTPQEVKLGELIKAKYNT 433
Query: 339 -PIMLCRFPADIKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKRE 397
+L +FPA I+ FY ++P + S DV E+ G+ RI DPE L+ +
Sbjct: 434 DFYILDKFPAAIRPFYTMPDIDDPNYSNSYDVFVRG-QEITSGAQRIHDPEFLMKRCIEK 492
Query: 398 GIDPAPYYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRD 440
G+DPA Y + ++GS PH G G+GLER+ L ++R
Sbjct: 493 GVDPATLKDYIESFRFGSWPHAGCGIGLERITMLYLGIPNIRK 535
|
| >3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica} Length = 548 | Back alignment and structure |
|---|
Score = 129 bits (327), Expect = 5e-32
Identities = 38/266 (14%), Positives = 74/266 (27%), Gaps = 64/266 (24%)
Query: 454 SKLAARDNAKSESKAKKEEEDAEKREKNLEEAKKIVLKEDPSLPPAVRIKIKD-GEKYRD 512
+AA K + + E + + + +I++ +
Sbjct: 3 GSMAATQEKKPQLPPVVLLKTPELVSGENFKVMPMHQSQPCYKTGLKYTEIEELVPAMAE 62
Query: 513 KRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILCQTEH----ALLLSTESSVQF 568
K VTI V +R +G ++F+ LR G Q ++ ++ +S ES
Sbjct: 63 KTVTIRARVQAVRGKGN-MVFLFLRKGIYTCQALVMKSETISKEFVQFCQKISAESICDI 121
Query: 569 RGRIEKVPE--GKSAPGGHELKVDYWEVVGLAP--------------------------- 599
G ++ V + K+ E+ V VV LA
Sbjct: 122 TGIVKAVEKPIEKATQQDVEIHVTSIAVVSLAEYPLPMQIEDLTFPSSVFKKQEEDIAKV 181
Query: 600 -------------------------AGGADAILNEEALPDVQLD----NRHIMIRGENTS 630
A + + V D NR + +R
Sbjct: 182 DEKIAKFLKDNEGKDLTKRPLKDEYAKLLKEKASAQKYVKVSQDTRLDNRMLDLRTVTNI 241
Query: 631 RVLLMRSVLLQALRAHFADRNYTEVN 656
+ ++S R + + E++
Sbjct: 242 AIFRIQSACCGLFREFLTSQKFVEIH 267
|
| >3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica} Length = 548 | Back alignment and structure |
|---|
Score = 50.2 bits (120), Expect = 1e-06
Identities = 10/54 (18%), Positives = 21/54 (38%), Gaps = 4/54 (7%)
Query: 87 KGLMFVTLRDGSGFIQCVLADILCQTEH----ALLLSTESSVQFRGRIEKVPEE 136
++F+ LR G Q ++ ++ +S ES G ++ V +
Sbjct: 78 GNMVFLFLRKGIYTCQALVMKSETISKEFVQFCQKISAESICDITGIVKAVEKP 131
|
| >3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A* Length = 438 | Back alignment and structure |
|---|
Score = 353 bits (909), Expect = e-116
Identities = 99/402 (24%), Positives = 169/402 (42%), Gaps = 56/402 (13%)
Query: 87 KGLMFVTLRDGSGFIQCVLADILCQTE---HALLLSTESSVQFRGRIEKVPEENMKVQLI 143
G+ F+ +RD G +Q E L +E V G + P+ + + I
Sbjct: 32 GGIKFLWIRDRDGIVQITAPKKKVDPELFKLIPKLRSEDVVAVEGVVNFTPKAKLGFE-I 90
Query: 144 HPSSYAIVWLGDLK---QGGYPPEVSL--------------------------------- 167
P ++ + + L
Sbjct: 91 LPEKIVVLNRAETPLPLDPTGKVKAELDTRLDNRFMDLRRPEVMAIFKIRSSVFKAVRDF 150
Query: 168 --ANGIAKVTPPTLVQTQVEGGSTLFSLNFFGEPAYLTQSSQLYLETCLP-ALGDVYCIA 224
NG ++ P ++ T EGG+ LF + +F E A+L QS QLY + + L VY IA
Sbjct: 151 FHENGFIEIHTPKIIATATEGGTELFPMKYFEEDAFLAQSPQLYKQIMMASGLDRVYEIA 210
Query: 225 QSYRAENSRTRRHLAEYTHVEAECAFLT-FDDLLDKLEDLICDTVDRVMATHGDLVRQMN 283
+RAE T RHL E +++E AF+ ++++ LE L+ ++ V + + +N
Sbjct: 211 PIFRAEEHNTTRHLNEAWSIDSEMAFIEDEEEVMSFLERLVAHAINYVREHNAKELDILN 270
Query: 284 PNFEPPARPFLRMNYADAIEYLRKHEIRKPDNTEYEFGEDIPEMPERKMTDQINR----- 338
E P PF R++Y A+E L E +GEDI ER + +
Sbjct: 271 FELEEPKLPFPRVSYDKALEILGDL------GKEIPWGEDIDTEGERLLGKYMMENENAP 324
Query: 339 PIMLCRFPADIKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREG 398
L ++P++ K FY+ K P + + D+ + E+ G R + L+ K +G
Sbjct: 325 LYFLYQYPSEAKPFYIMKYDNKPEICRAFDLEYRG-VEISSGGQREHRHDILVEQIKEKG 383
Query: 399 IDPAPYYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRD 440
++P + +Y +YG PHGG+GLG ER++ +L+ ++R+
Sbjct: 384 LNPESFEFYLKAFRYGMPPHGGFGLGAERLIKQMLDLPNIRE 425
|
| >3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A* Length = 438 | Back alignment and structure |
|---|
Score = 128 bits (324), Expect = 5e-32
Identities = 36/161 (22%), Positives = 66/161 (40%), Gaps = 9/161 (5%)
Query: 501 RIKIKD-GEKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILCQTE---H 556
+ E+ ++V + GWV ++ G + F+ +RD G +Q E
Sbjct: 4 THYSSEITEELNGQKVKVAGWVWEVKDLGG-IKFLWIRDRDGIVQITAPKKKVDPELFKL 62
Query: 557 ALLLSTESSVQFRGRIEKVPEGKSAPGGHELKVDYWEVVGLAPAG-GADAILNEEALPDV 615
L +E V G + P+ A G E+ + V+ A D +A D
Sbjct: 63 IPKLRSEDVVAVEGVVNFTPK---AKLGFEILPEKIVVLNRAETPLPLDPTGKVKAELDT 119
Query: 616 QLDNRHIMIRGENTSRVLLMRSVLLQALRAHFADRNYTEVN 656
+LDNR + +R + +RS + +A+R F + + E++
Sbjct: 120 RLDNRFMDLRRPEVMAIFKIRSSVFKAVRDFFHENGFIEIH 160
|
| >1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A* Length = 294 | Back alignment and structure |
|---|
Score = 254 bits (650), Expect = 1e-79
Identities = 53/261 (20%), Positives = 102/261 (39%), Gaps = 40/261 (15%)
Query: 185 EGGSTLFSLNFFGEPAYLTQSSQLYLETCLP-ALGDVYCIAQSYRAEN--SRTRRHLAEY 241
G + +G LT S L+ + + L ++ ++ + R E+ RH E+
Sbjct: 55 GEGMEPAEVEIYGVKMRLTHSMILHKQLAIAMGLKKIFVLSPNIRLESRQKDDGRHAYEF 114
Query: 242 THVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGDLVRQMNPNFEPPARPFLRMNYADA 301
T ++ E +D++ +E L+ + G P + F Y++
Sbjct: 115 TQLDFEVERAKMEDIMRLIERLVYGLFRKAEEWTGREF--------PKTKRFEVFEYSEV 166
Query: 302 IEYLRKHEIRKPDNTEYEFGEDIPEMPERKMTDQINRPIMLCRFPADIKSFYMSKCPENP 361
+E EFG D E + P + P + FY E
Sbjct: 167 LE---------------EFGSDEKASQEME------EPFWIINIP---REFYD---REVD 199
Query: 362 ALTESVDVLFP-NVGEVIGGSMRIWDPEELLAGYKREGIDPAPYYWYTDQRKYGS-TPHG 419
+ D++ P GEV G R W+ E+++A ++ G++ + Y + K G P
Sbjct: 200 GFWRNYDLILPYGYGEVASGGEREWEYEKIVAKIRKAGLNEDSFRPYLEIAKAGKLKPSA 259
Query: 420 GYGLGLERVLCWLLNQYHVRD 440
G G+G+ER++ +++ H+ +
Sbjct: 260 GAGIGVERLVRFIVGAKHIAE 280
|
| >2kqr_A Asparaginyl-tRNA synthetase, cytoplasmic; aminoacyl-tRNA synthetase, ATP-binding, ligas nucleotide-binding, protein biosynthesis; NMR {Brugia malayi} Length = 113 | Back alignment and structure |
|---|
Score = 74.7 bits (183), Expect = 2e-16
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 439 RDKYQLIAKAQLKKVSKLAARDNAKSESKAKKEEEDAEK---REKNLEEAKKIVLKEDPS 495
+ ++ +K LKK K ++ K+E A K E + LEEAKK+ ++ D S
Sbjct: 50 KQVWEAASKTALKKSWKRYEQEMLKNEKVAAKMLEKDATEVGVKAALEEAKKVQIELDTS 109
Query: 496 L 496
L
Sbjct: 110 L 110
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 72.6 bits (177), Expect = 3e-13
Identities = 86/626 (13%), Positives = 179/626 (28%), Gaps = 160/626 (25%)
Query: 69 IITNINIPAIPG-PPAIPGKGLMFVTLRD-GSGFIQCVLADILCQTEHALLLS------- 119
I++ I I A+ G +F TL +Q + ++L + + L+S
Sbjct: 45 ILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVL-RINYKFLMSPIKTEQR 103
Query: 120 -----TESSVQFRGRIEKVPEENMK--VQLIHPSSYAIVWLGDLKQGGYPPEVSLANG-- 170
T ++ R R+ + K V + P L +L+ V + +G
Sbjct: 104 QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKN---VLI-DGVL 159
Query: 171 -------IAKVTPPTLVQTQVEGGSTLFSLNFFGE----PAYLTQSSQLY--LETCLPAL 217
V VQ +++ +F LN L +L ++ +
Sbjct: 160 GSGKTWVALDVCLSYKVQCKMDFK--IFWLNL-KNCNSPETVLEMLQKLLYQIDPNWTSR 216
Query: 218 GDVYC-IAQSYRAENSRTRRHLAEYTHVEAECAFLTFDDLLDK--LE--DLICDTV---- 268
D I + + RR L + L ++ + +L C +
Sbjct: 217 SDHSSNIKLRIHSIQAELRRLLKSKPYENC---LLVLLNVQNAKAWNAFNLSCKILLTTR 273
Query: 269 DRVMATHGDLVRQMNPNFEPPARPFLRMNYADAIEYLRKHEIRKPDNTEYEFGEDIPEMP 328
+ + + + + + + L K+ ++P
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTP---DEVKSLLLKY-----------LDCRPQDLP 319
Query: 329 ERKMTDQINRPIMLCRFPADIKSFYMSKCPENPALTESV-DVLFPNVGEVIGGSMRIWDP 387
N P L I+ + A ++ V + +I S+ + +P
Sbjct: 320 RE--VLTTN-PRRLSIIAESIR--------DGLATWDNWKHVNCDKLTTIIESSLNVLEP 368
Query: 388 EELLAGYKREGIDPA----PYYWYTDQRKYGSTPHGGYGLGLERVLC--WLLNQYHVRDK 441
E + R + P P +L W ++
Sbjct: 369 AEYRKMFDRLSVFPPSAHIP----------------------TILLSLIW---FDVIKSD 403
Query: 442 YQLIAKAQLKKVSKLAARDNAKSE--------SKAKKEEEDAEKREKNLE--EAKKIVLK 491
++ +L K S L + +S K E + ++ K
Sbjct: 404 VMVVVN-KLHKYS-LVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDS 461
Query: 492 EDPSLPPAVRIKIKDGEKY-------------RDKRVTIF-------GWVHR-LRRQGKG 530
+D P D Y +R+T+F ++ + +R
Sbjct: 462 DDLIPPYL------DQ--YFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDS-- 511
Query: 531 LMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEGKSAPGGHELKVD 590
T + SG I L + + ++ ++ + + + + +
Sbjct: 512 ----TAWNASGSILNTLQQLKFYKPYI----CDNDPKYERLVNAILDFLPKIEENLICSK 563
Query: 591 YWEVVGLAPAGGADAILNEEALPDVQ 616
Y +++ +A +AI EEA VQ
Sbjct: 564 YTDLLRIALMAEDEAIF-EEAHKQVQ 588
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 41.8 bits (97), Expect = 8e-04
Identities = 36/255 (14%), Positives = 75/255 (29%), Gaps = 75/255 (29%)
Query: 433 LNQYHVRDK-YQLIAKAQLKKVSKLAARDNA----------KSESKAKKEEEDAEKREKN 481
+ V+D +++K ++ + + K E +K E+ +
Sbjct: 33 FDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYK 92
Query: 482 -LEEAKKIVLKEDPSLPPAVRIKIK-----DGEKYRDKRVTIFGWVHRLR------RQGK 529
L K + PS+ + I+ + D + + V+ +LR R K
Sbjct: 93 FLMSPIKTEQR-QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAK 151
Query: 530 GL----MFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEGKSAPGGH 585
+ + GSG + +A +C + +++ + K
Sbjct: 152 NVLIDGVL-----GSG--KTWVALDVCLSY---------------KVQCKMDFK------ 183
Query: 586 ELKVDYWEVVGLAPAGGADAILNEEALPDVQLDNRHIMIRGENTSRVLLMRSVLL----- 640
+ +W + L + +L L I TSR ++ L
Sbjct: 184 ---I-FW--LNLKNCNSPETVLE-------MLQKLLYQIDPNWTSRSDHSSNIKLRIHSI 230
Query: 641 -QALRAHFADRNYTE 654
LR + Y
Sbjct: 231 QAELRRLLKSKPYEN 245
|
| >1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A Length = 580 | Back alignment and structure |
|---|
Score = 62.9 bits (154), Expect = 2e-10
Identities = 41/158 (25%), Positives = 70/158 (44%), Gaps = 13/158 (8%)
Query: 508 EKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQ 567
E + + V + GWV+R R G GL+F+ LRD G +Q V A + E V+
Sbjct: 12 ETHVGEEVVLEGWVNRRRDLG-GLIFLDLRDREGLVQLVAHPASPAYATAERVRPEWVVR 70
Query: 568 FRGRIEKVPEG--KSAPGGHELKVDYWEVVGLAPA--------GGADAILNEEALPDVQL 617
+G + PE + A G E+++ EV LA A G +EA +++L
Sbjct: 71 AKGLVRLRPEPNPRLATGRVEVELSALEV--LAEAKTPPFPVDAGWRGEEEKEASEELRL 128
Query: 618 DNRHIMIRGENTSRVLLMRSVLLQALRAHFADRNYTEV 655
R++ +R L +R +++A+ + +V
Sbjct: 129 KYRYLDLRRRRMQENLRLRHRVIKAIWDFLDREGFVQV 166
|
| >1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A* Length = 585 | Back alignment and structure |
|---|
Score = 61.7 bits (151), Expect = 4e-10
Identities = 36/166 (21%), Positives = 64/166 (38%), Gaps = 34/166 (20%)
Query: 508 EKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVL----ADILCQTEHALLLSTE 563
+ ++VT+ GWV+R R G L+F+ +RD G +Q AD L + A L E
Sbjct: 11 LSHVGQQVTLCGWVNRRRDLG-SLIFIDMRDREGIVQVFFDPDRADAL---KLASELRNE 66
Query: 564 SSVQFRGRIEKVPEGKSAP----GGHELKVDYWEVVGLAPAGGADAILNE-EALP----- 613
+Q G + E G E+ I+N + LP
Sbjct: 67 FCIQVTGTVRARDEKNINRDMATGEIEVLASSLT------------IINRADVLPLDSNH 114
Query: 614 ----DVQLDNRHIMIRGENTSRVLLMRSVLLQALRAHFADRNYTEV 655
+ +L R++ +R ++ L R+ + +R D + ++
Sbjct: 115 VNTEEARLKYRYLDLRRPEMAQRLKTRAKITSLVRRFMDDHGFLDI 160
|
| >3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A* Length = 345 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 2e-05
Identities = 52/300 (17%), Positives = 98/300 (32%), Gaps = 60/300 (20%)
Query: 177 PTLVQTQVEGGSTL--------FSLNFFGEPAYLTQSSQLYLETCLPA-LGDVYCIAQSY 227
P + Q V L + G +L S + +++ L A G V+ + +S+
Sbjct: 61 PCMSQATV-TDIHLVPFETRFVGPGHSQGMNLWLMTSPEYHMKRLLVAGCGPVFQLCRSF 119
Query: 228 RAENSRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMA---THGDLVRQMNP 284
R E R H E+T +E L+++++DL+ +D A ++ +
Sbjct: 120 RNE-EMGRYHNPEFTMLEWYRPHYDMYRLMNEVDDLLQQVLDCPAAESLSYQQAFLRY-L 177
Query: 285 NFEPPARPFLRMNYADAIEYLRKHEIRKPDNTEYEFGEDIPEMPERKMTDQIN--RPIML 342
+P L + E K ++ +TE + + + + I +P +
Sbjct: 178 EIDP-----LSADKTQLREVAAKLDLSNVADTEEDRDTLLQLLFTFGVEPNIGKEKPTFV 232
Query: 343 CRFPADIKSFYMS----KCPENPALTESVDVLFPNVGEVIGGSMRIW-------DPEELL 391
FPA + E+ + E F EV + + D E
Sbjct: 233 YHFPASQ-----ASLAQISTEDHRVAER----F----EVYYKGIELANGFHELTDAREQQ 279
Query: 392 A------GYKREGIDPAPYYWYTDQR-----KYGSTPHGGYGLGLERVLCWLLNQYHVRD 440
+ P DQ K G G LG++R++ L + +
Sbjct: 280 QRFEQDNRKRAARGLPQHPI---DQNLIEALKVGMPDCSGVALGVDRLVMLALGAETLAE 336
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 658 | |||
| 3m4p_A | 456 | Ehasnrs, asparaginyl-tRNA synthetase, putative; am | 100.0 | |
| 2xgt_A | 435 | Asparaginyl-tRNA synthetase, cytoplasmic; ligase, | 100.0 | |
| 3nem_A | 438 | Aspartyl-tRNA synthetase; rossmann fold, OB fold, | 100.0 | |
| 3bju_A | 521 | Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, | 100.0 | |
| 4ex5_A | 529 | Lysine--tRNA ligase; structural genomics, niaid, n | 100.0 | |
| 1e1o_A | 504 | Lysyl-tRNA synthetase, heat inducible; ligase, ami | 100.0 | |
| 1wyd_A | 429 | Hypothetical aspartyl-tRNA synthetase; archaea, LI | 100.0 | |
| 3i7f_A | 548 | Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-bi | 100.0 | |
| 3a74_A | 493 | Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, | 100.0 | |
| 1x54_A | 434 | Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthe | 100.0 | |
| 1n9w_A | 422 | Aspartyl-tRNA synthetase 2; biosynthetic protein; | 100.0 | |
| 1eov_A | 487 | ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA sy | 100.0 | |
| 1l0w_A | 580 | Aspartyl-tRNA synthetase; space-grown crystal, dim | 100.0 | |
| 1c0a_A | 585 | Aspartyl tRNA synthetase; protein-RNA complex, lig | 100.0 | |
| 4ah6_A | 617 | Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo | 100.0 | |
| 3a5y_A | 345 | GENX, putative lysyl-tRNA synthetase; aminoacyl-tR | 100.0 | |
| 1nnh_A | 294 | Asparaginyl-tRNA synthetase-related peptide; struc | 100.0 | |
| 3m4p_A | 456 | Ehasnrs, asparaginyl-tRNA synthetase, putative; am | 99.97 | |
| 3bju_A | 521 | Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, | 99.96 | |
| 2xgt_A | 435 | Asparaginyl-tRNA synthetase, cytoplasmic; ligase, | 99.96 | |
| 4ex5_A | 529 | Lysine--tRNA ligase; structural genomics, niaid, n | 99.96 | |
| 1e1o_A | 504 | Lysyl-tRNA synthetase, heat inducible; ligase, ami | 99.96 | |
| 1l0w_A | 580 | Aspartyl-tRNA synthetase; space-grown crystal, dim | 99.96 | |
| 3a74_A | 493 | Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, | 99.96 | |
| 1c0a_A | 585 | Aspartyl tRNA synthetase; protein-RNA complex, lig | 99.95 | |
| 3i7f_A | 548 | Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-bi | 99.95 | |
| 3nem_A | 438 | Aspartyl-tRNA synthetase; rossmann fold, OB fold, | 99.95 | |
| 1wyd_A | 429 | Hypothetical aspartyl-tRNA synthetase; archaea, LI | 99.95 | |
| 1eov_A | 487 | ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA sy | 99.95 | |
| 1n9w_A | 422 | Aspartyl-tRNA synthetase 2; biosynthetic protein; | 99.94 | |
| 1x54_A | 434 | Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthe | 99.94 | |
| 4ah6_A | 617 | Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo | 99.92 | |
| 12as_A | 330 | Asparagine synthetase; ligase, nitrogen fixation; | 99.86 | |
| 3dsq_A | 288 | Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-t | 99.7 | |
| 3qtc_A | 290 | Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthet | 99.69 | |
| 1b7y_A | 350 | Phers, protein (phenylalanyl-tRNA synthetase); enz | 99.44 | |
| 2rhq_A | 294 | Phenylalanyl-tRNA synthetase alpha chain; heterote | 99.34 | |
| 3pco_A | 327 | Phenylalanyl-tRNA synthetase, alpha subunit; amino | 99.0 | |
| 3l4g_A | 508 | Phenylalanyl-tRNA synthetase alpha chain; aminoacy | 98.8 | |
| 3qtc_A | 290 | Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthet | 98.56 | |
| 3cmq_A | 415 | Phenylalanyl-tRNA synthetase, mitochondrial; class | 97.98 | |
| 2du3_A | 534 | O-phosphoseryl-tRNA synthetase; alpha4 tetramer, l | 97.77 | |
| 2dq3_A | 425 | Seryl-tRNA synthetase; coiled-coil, homodimer, str | 97.76 | |
| 1evl_A | 401 | Threonyl-tRNA synthetase; amino acid recognition, | 97.68 | |
| 1hc7_A | 477 | Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, | 97.59 | |
| 2i4l_A | 458 | Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseud | 97.49 | |
| 3uh0_A | 460 | Threonyl-tRNA synthetase, mitochondrial; threonine | 97.44 | |
| 2j3l_A | 572 | Prolyl-tRNA synthetase; class II aminoacyl- T synt | 97.36 | |
| 2du7_A | 549 | O-phosphoseryl-tRNA synthetase; alpha4 tetramer, l | 97.35 | |
| 1ses_A | 421 | Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A | 97.34 | |
| 1nyr_A | 645 | Threonyl-tRNA synthetase 1; ATP, threonine, ligase | 97.34 | |
| 2dq0_A | 455 | Seryl-tRNA synthetase; coiled-coil, homodimer, str | 97.32 | |
| 3a5y_A | 345 | GENX, putative lysyl-tRNA synthetase; aminoacyl-tR | 97.31 | |
| 1qe0_A | 420 | Histidyl-tRNA synthetase; class II tRNA synthetase | 97.31 | |
| 3qne_A | 485 | Seryl-tRNA synthetase, cytoplasmic; amino acid bio | 97.3 | |
| 1nj1_A | 501 | PROR, proline-tRNA synthetase, proline--tRNA ligas | 97.28 | |
| 1z7m_A | 344 | ATP phosphoribosyltransferase regulatory subunit; | 97.23 | |
| 2odr_B | 648 | Phosphoseryl-tRNA synthetase; phosphoserine tRNA s | 97.19 | |
| 2odr_A | 665 | Phosphoseryl-tRNA synthetase; phosphoserine tRNA s | 97.18 | |
| 2odr_D | 685 | Phosphoseryl-tRNA synthetase; phosphoserine tRNA s | 97.17 | |
| 2odr_C | 701 | Phosphoseryl-tRNA synthetase; phosphoserine tRNA s | 97.15 | |
| 3ial_A | 518 | Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, | 97.15 | |
| 4hvc_A | 519 | Bifunctional glutamate/proline--tRNA ligase; ligas | 97.13 | |
| 1wu7_A | 434 | Histidyl-tRNA synthetase; ligase, structural genom | 97.11 | |
| 3lss_A | 484 | Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, | 97.09 | |
| 1nj8_A | 459 | Proline-tRNA synthetase, proline--tRNA ligase; cla | 97.09 | |
| 2cja_A | 522 | Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE | 97.06 | |
| 1wle_A | 501 | Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bo | 97.05 | |
| 3vbb_A | 522 | Seryl-tRNA synthetase, cytoplasmic; coiled-coil, l | 97.05 | |
| 1qf6_A | 642 | THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, m | 97.01 | |
| 3net_A | 465 | Histidyl-tRNA synthetase; aminoacyl-tRNA synthetas | 96.98 | |
| 4e51_A | 467 | Histidine--tRNA ligase; seattle structural genomic | 96.94 | |
| 3od1_A | 400 | ATP phosphoribosyltransferase regulatory subunit; | 96.93 | |
| 1h4v_B | 421 | Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA | 96.89 | |
| 3rac_A | 373 | Histidine-tRNA ligase; structural genomics, PSI-bi | 96.88 | |
| 3a32_A | 471 | Probable threonyl-tRNA synthetase 1; aeropyrum per | 96.81 | |
| 3err_A | 536 | Fusion protein of microtubule binding domain from | 96.79 | |
| 1htt_A | 423 | Histidyl-tRNA synthetase; complex (tRNA synthetase | 96.73 | |
| 1usy_A | 275 | ATP phosphoribosyltransferase regulatory subunit; | 96.63 | |
| 2k50_A | 115 | Replication factor A related protein; uncharacteri | 96.59 | |
| 3lc0_A | 456 | Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-t | 96.53 | |
| 1ati_A | 505 | Glycyl-tRNA synthetase; protein biosynthesis, liga | 96.46 | |
| 3dm3_A | 105 | Replication factor A; probably plays AN essential | 96.08 | |
| 4g84_A | 464 | Histidine--tRNA ligase, cytoplasmic; synthetase; 2 | 95.9 | |
| 3kf6_A | 159 | Protein STN1; OB fold, chromosomal protein, DNA-bi | 95.69 | |
| 3e0e_A | 97 | Replication protein A; structural genomics, PSI-2, | 95.63 | |
| 4g85_A | 517 | Histidine-tRNA ligase, cytoplasmic; synthetase; 3. | 95.52 | |
| 2kqr_A | 113 | Asparaginyl-tRNA synthetase, cytoplasmic; aminoacy | 95.51 | |
| 3kdf_D | 132 | Replication protein A 32 kDa subunit; wheat GERM c | 95.43 | |
| 3mf2_A | 346 | BLL0957 protein; aminoacyl-tRNA synthetase, seryl- | 95.37 | |
| 3ikl_A | 459 | DNA polymerase subunit gamma-2, mitochondrial; tra | 95.3 | |
| 4gop_B | 136 | Putative uncharacterized protein; OB fold, ssDNA b | 95.11 | |
| 1nnx_A | 109 | Protein YGIW; structural genomics, hypothetical pr | 95.05 | |
| 2k50_A | 115 | Replication factor A related protein; uncharacteri | 94.61 | |
| 3au7_A | 402 | TIAS, putative uncharacterized protein; ATP hydrol | 94.37 | |
| 1ynx_A | 114 | Replication factor-A protein 1; canonical OB fold, | 93.39 | |
| 3kdf_D | 132 | Replication protein A 32 kDa subunit; wheat GERM c | 93.27 | |
| 1g5h_A | 454 | Mitochondrial DNA polymerase accessory subunit; in | 92.8 | |
| 4gop_B | 136 | Putative uncharacterized protein; OB fold, ssDNA b | 92.52 | |
| 2pi2_A | 270 | Replication protein A 32 kDa subunit; FULL-length | 92.32 | |
| 3l4g_B | 589 | Phenylalanyl-tRNA synthetase beta chain; aminoacyl | 92.18 | |
| 3kdf_A | 121 | Replication protein A 14 kDa subunit; wheat GERM c | 92.15 | |
| 1o7i_A | 119 | SSB, SSO2364, single stranded DNA binding protein; | 91.95 | |
| 2rhq_B | 795 | Phenylalanyl-tRNA synthetase beta chain; heterotet | 91.47 | |
| 3ig2_A | 213 | Phenylalanyl-tRNA synthetase beta chain; phers, MC | 91.43 | |
| 2kbn_A | 109 | Conserved protein; nucleic acid binding protein, b | 90.22 | |
| 1nnx_A | 109 | Protein YGIW; structural genomics, hypothetical pr | 89.47 | |
| 3ica_A | 213 | Phenylalanyl-tRNA synthetase beta chain; APC61692. | 88.59 | |
| 3kf8_A | 220 | Protein STN1; OB fold; 2.40A {Candida tropicalis m | 88.55 | |
| 3e0e_A | 97 | Replication protein A; structural genomics, PSI-2, | 88.24 | |
| 3dm3_A | 105 | Replication factor A; probably plays AN essential | 87.05 | |
| 1txy_A | 104 | Primosomal replication protein N; OB fold, dimer, | 87.01 | |
| 3kf6_A | 159 | Protein STN1; OB fold, chromosomal protein, DNA-bi | 85.86 | |
| 2pi2_E | 142 | Replication protein A 14 kDa subunit; FULL-length | 85.42 | |
| 1jmc_A | 246 | Protein (replication protein A (RPA)); human ssDNA | 85.2 | |
| 2hpi_A | 1220 | DNA polymerase III alpha subunit; POL-beta-like nu | 84.33 | |
| 3fhw_A | 115 | Primosomal replication protein N; PRIB BPR162 X-RA | 82.44 | |
| 1sr3_A | 136 | APO-CCME; OB fold, beta barrel, flexible C-termina | 81.85 | |
| 2pi2_A | 270 | Replication protein A 32 kDa subunit; FULL-length | 81.55 | |
| 1b7y_B | 785 | Phers, protein (phenylalanyl-tRNA synthetase); enz | 81.53 | |
| 1j6q_A | 136 | Cytochrome C maturation protein E; all-beta protei | 81.08 | |
| 2kct_A | 94 | Cytochrome C-type biogenesis protein CCME; solutio | 81.06 |
| >3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-98 Score=827.27 Aligned_cols=379 Identities=50% Similarity=0.881 Sum_probs=337.4
Q ss_pred cCCcEEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccc-hhhhhhcCCCccEEEEEEEeEeCCC----------C
Q psy8087 68 YIITNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILC-QTEHALLLSTESSVQFRGRIEKVPE----------E 136 (658)
Q Consensus 68 ~~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~-~~~~~~~l~~es~V~v~G~l~~~p~----------~ 136 (658)
..|++|+|+|||+++|.+||+++|++|||++|.||||++++.. ..+....|+.||+|.|+|.|..+|. +
T Consensus 28 ~~g~~V~v~Gwv~~~R~~Gk~~~Fi~LrD~sg~iQvv~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~~~~t~g 107 (456)
T 3m4p_A 28 LEGKLVTFKGWAYHIRKARKTLIFVELRDGSGYCQCVIFGKELCEPEKVKLLTRECSLEITGRLNAYAGKNHPPEIADIL 107 (456)
T ss_dssp CCSSEEEEEEEEEEEECCSSSEEEEEEECSSCEEEEEEESTTTTCHHHHTTCCTTCEEEEEEEEECCCSSSCCCSCTTBC
T ss_pred cCCCEEEEEEEEEEEecCCCceEEEEEEeCCccEEEEEecccchhhHHhhcCCCccEEEEEeEEEecCCcccCcccCCCC
Confidence 5789999999999999999899999999999999999987432 2334457999999999999998775 4
Q ss_pred ccceEecC-----------C-------------CceeEEeecCCccc---------CchHHHhhhCCcEEEcCCcccccc
Q psy8087 137 NMKVQLIH-----------P-------------SSYAIVWLGDLKQG---------GYPPEVSLANGIAKVTPPTLVQTQ 183 (658)
Q Consensus 137 ~~d~~l~~-----------p-------------~~R~l~lr~~~~~~---------~~iR~fl~~~gF~EV~TPiL~~~~ 183 (658)
.+|+.++. | ++||||||++..++ ++||+||.++||+||+||+|++++
T Consensus 108 ~~El~~~~i~vl~~a~~~~~~~~~~~~~~e~r~~~R~LdlR~~~~~~~lr~Rs~i~~~iR~ff~~~gF~EVeTPiL~~s~ 187 (456)
T 3m4p_A 108 NLEMQVTEWKVIGESPIDLENIINKDSSIPQKMQNRHIVIRSEHTQQVLQLRSEIQWYFRKYYHDNHFTEIQPPTIVKTQ 187 (456)
T ss_dssp SSEEEEEEEEEEECCCGGGTTTSCTTCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEC--
T ss_pred cEEEEEeEEEEEecCCCCCcccccccCCHHHHhhchHHhhhcHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeCCeeecCC
Confidence 43333211 0 24999999876544 699999999999999999999889
Q ss_pred CCCCccceeeccCCcceeeccCHHHHHHHhcccCCcEEEEeeeeecCCCCCccCcceeeeeeeEeecCCHHHHHHHHHHH
Q psy8087 184 VEGGSTLFSLNFFGEPAYLTQSSQLYLETCLPALGDVYCIAQSYRAENSRTRRHLAEYTHVEAECAFLTFDDLLDKLEDL 263 (658)
Q Consensus 184 ~eG~~~~F~~~~~~~~~~L~~Spqlylk~li~g~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~a~~d~~~~m~~~e~l 263 (658)
+|||+++|+++|||+++||+||||||||+|++|++||||||||||||+++++|||||||||||||+|+|++|+|+++|+|
T Consensus 188 ~eGg~~~f~~~~~~~~~~L~~SpqL~lq~l~~g~~rVyeig~~FR~E~~~t~rH~pEFtmlE~e~af~d~~d~m~~~E~l 267 (456)
T 3m4p_A 188 CEGGSTLFKLQYFNEPAYLTQSSQLYLESVIASLGKSFCMLSSYRAEQSRTVRHLAEYLHLEAELPFISFEDLLNHLEDL 267 (456)
T ss_dssp ----CCCCEEEETTEEEEECSCCHHHHHTTHHHHSSEEEEEEEECCCSCCCSSCCSEEEEEEEEEESCCHHHHHHHHHHH
T ss_pred CCCccccccccccCCCcccccCHHHHHHHHHhccCcEEEEEhheecCCCCCCcchHHHHHhHHHHhcCCHHHHHHHHHHH
Confidence 99999999999999999999999999999998999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccccccccCCCCCCCCCCcceeeHHHHHHHHHHcCCCCCCCCCcccCCCCCCchhhhhhcccCCcEEEE
Q psy8087 264 ICDTVDRVMATHGDLVRQMNPNFEPPARPFLRMNYADAIEYLRKHEIRKPDNTEYEFGEDIPEMPERKMTDQINRPIMLC 343 (658)
Q Consensus 264 i~~i~~~~~~~~~~~~~~~~~~~~~~~~pf~rit~~ea~~~l~~~g~~~~~~~~~~~g~~l~~~~e~~l~~~~~~p~fi~ 343 (658)
|+++++.+.+++...++.+++++..++.||+||||.||++++++.|++.++ ..+.||++++.++|+++++.+++|+||+
T Consensus 268 i~~~~~~v~~~~~~~~~~~~~~~~~~~~pf~rity~eAi~~l~~~g~~~~~-~~~~~g~~l~~~~e~~l~~~~~~P~fv~ 346 (456)
T 3m4p_A 268 VCTVIDNVMAVHGDKIRKMNPHLKLPTRPFKRMTYADAIKYCNDHGILNKD-KPFEYGEDISEKPERQMTDEIGCPIFMI 346 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCCCCCSSCEEEEHHHHHHHHHHHTCCSSS-SCCCTTCCCCHHHHHHHHHHHTSCEEEE
T ss_pred HHHHHHHHhhhhhhhHhhcCcccccCCCCCeEeeHHHHHHHHHHcCCCccc-cCcchHHHHHHHHHHHHHHHhCceEEEE
Confidence 999999998877666666666665566899999999999999999986543 3467999999999999999999999999
Q ss_pred eCCCCCCCCCCccCCCCcCceeEEEEEeCCcceeeeceeccCCHHHHHHHHHHcCCCCCCCcchHHHhhcCCCCccceec
Q psy8087 344 RFPADIKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGIDPAPYYWYTDQRKYGSTPHGGYGL 423 (658)
Q Consensus 344 ~~P~~~~pfy~~~~~~~~~~~~~fdL~~~G~~Ei~~G~~r~~d~~~~~~~~~~~g~~~~~~~~yl~a~~~G~pP~gG~Gi 423 (658)
|||.+++||||+++++||++++|||||++|+|||+|||+|+|||++|++||++.|+++++++|||++++|||||||||||
T Consensus 347 ~yP~~~~pfy~k~~~~dp~~~~rfdL~~~G~gEi~~G~~r~~d~~~l~~r~~~~g~~~~~~~~yld~~~~G~pP~gG~Gl 426 (456)
T 3m4p_A 347 HFPSKMKAFYMSKVPGHPDLTESVDLLMPGVGEIVGGSMRIWNYDELMGAYKANGLNPDPYYWYTQQRKYGSCPHGGYGL 426 (456)
T ss_dssp CCBGGGSCTTBCEETTEEEEECEEEEEETTTEEEEEEEEBCCCHHHHHHHHHTTTCCCGGGHHHHGGGTSSCCCEEEEEE
T ss_pred CCCchhCccccccCCCCCCeeEEEEEEeCCceEEccceeecCCHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCcccEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHhcccCcchhhHHHHH
Q psy8087 424 GLERVLCWLLNQYHVRDKYQLIAK 447 (658)
Q Consensus 424 GidRL~m~l~g~~~Irdvi~f~~k 447 (658)
|||||+|++||.+||||||+||..
T Consensus 427 GidRLvm~ltg~~~Irdvi~FPr~ 450 (456)
T 3m4p_A 427 GVERLVMWLLGEDHIRKVCLYPRY 450 (456)
T ss_dssp EHHHHHHHHHTCSCGGGGSSSCBB
T ss_pred cHHHHHHHHcCCccHHHeeccCCC
Confidence 999999999999999999999853
|
| >2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-97 Score=811.74 Aligned_cols=380 Identities=54% Similarity=0.946 Sum_probs=337.2
Q ss_pred cCCcEEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccchhhhhhcCCCccEEEEEEEeEeCCC-----CccceEe
Q psy8087 68 YIITNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPE-----ENMKVQL 142 (658)
Q Consensus 68 ~~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~~~~~~~~l~~es~V~v~G~l~~~p~-----~~~d~~l 142 (658)
..|++|+|+|||+++|.+||+++|++|||++|.||||++++..+.++...++.||+|.|+|.|.++|. +.+|+.+
T Consensus 9 ~~~~~V~v~Gwv~~~R~~Gk~~~Fi~LrD~~g~iQvv~~~~~~~~~~~~~l~~~~~v~v~G~v~~~~~~~~~~g~~El~~ 88 (435)
T 2xgt_A 9 HRNERVCIKGWIHRMRRQGKSLMFFILRDGTGFLQVLLMDKLCQTYDALTVNTECTVEIYGAIKEVPEGKEAPNGHELIA 88 (435)
T ss_dssp GTTSEEEEEEEEEEEEECTTSEEEEEEECSSCEEEEEEEGGGGSSHHHHHCCTTCEEEEEEEEEECC------TTEEEEE
T ss_pred cCCCEEEEEEEEEEecccCCCcEEEEEEECCceEEEEECCcchhHHHHhcCCCCCEEEEEEEEEecCCCcCCCCcEEEEE
Confidence 56889999999999999998899999999999999999854333344447999999999999998763 2222221
Q ss_pred c--------CC-----------------CceeEEeecCCccc---------CchHHHhhhCCcEEEcCCccccccCCCCc
Q psy8087 143 I--------HP-----------------SSYAIVWLGDLKQG---------GYPPEVSLANGIAKVTPPTLVQTQVEGGS 188 (658)
Q Consensus 143 ~--------~p-----------------~~R~l~lr~~~~~~---------~~iR~fl~~~gF~EV~TPiL~~~~~eG~~ 188 (658)
+ .| ++||||||++..++ ++||+||.++||+||+||+|+++++|||+
T Consensus 89 ~~~~vl~~~~p~~~~pl~~~~~~~e~r~~~R~Ldlr~~~~~~~~r~Rs~i~~~iR~ff~~~gFlEVeTPiL~~s~~eG~~ 168 (435)
T 2xgt_A 89 DFWKIIGNAPPGGIDNVLNEEASVDKMLDNRHLVIRGENAAALLRLRAAATRAMREHFYNAGYVEVAPPTLVQTQVEGGS 168 (435)
T ss_dssp EEEEEEECCCTTHHHHHCC--CCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESCCSSCTT
T ss_pred EEEEEeecCCCcccccccccCCCHHHHhhCeeeeecCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCeEeeccCCCch
Confidence 1 00 25899998775544 69999999999999999999988999999
Q ss_pred cceeeccCCcceeeccCHHHHHHHhcccCCcEEEEeeeeecCCCCCccCcceeeeeeeEeecCCHHHHHHHHHHHHHHHH
Q psy8087 189 TLFSLNFFGEPAYLTQSSQLYLETCLPALGDVYCIAQSYRAENSRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTV 268 (658)
Q Consensus 189 ~~F~~~~~~~~~~L~~Spqlylk~li~g~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~a~~d~~~~m~~~e~li~~i~ 268 (658)
++|+++|||+++||+||||||||++++|++||||||||||||+++++|||||||||||||+|+|++|+|+++|+||++++
T Consensus 169 ~~F~~~~~g~~~~L~~SpqLylq~l~~g~~rvfeIg~~FR~E~~~t~RH~~EFT~lE~e~af~d~~d~m~~~E~li~~~~ 248 (435)
T 2xgt_A 169 TLFNLDYFGEQSFLTQSSQLYLETCIPTLGDVFCIAQSYRAEKSRTRRHLAEYAHVEAECPFITLDDLMEKIEELVCDTV 248 (435)
T ss_dssp SCCEEEETTEEEEECSCSHHHHHHHHHHHCSEEEEEEEECCCSSCCTTCCSEEEEEEEEEESCCHHHHHHHHHHHHHHHH
T ss_pred hceeeccCCcccccCCChHHHHHHhhhccCceEEEecceecCCCCccccccceeEEEEEEecCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998899999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcccc--cccccCCCCCCCCCCcceeeHHHHHHHHHHcCCCCCCCCCcccCCCCCCchhhhhhcccCCcEEEEeCC
Q psy8087 269 DRVMATHGD--LVRQMNPNFEPPARPFLRMNYADAIEYLRKHEIRKPDNTEYEFGEDIPEMPERKMTDQINRPIMLCRFP 346 (658)
Q Consensus 269 ~~~~~~~~~--~~~~~~~~~~~~~~pf~rit~~ea~~~l~~~g~~~~~~~~~~~g~~l~~~~e~~l~~~~~~p~fi~~~P 346 (658)
+.+.+.+.. .++.+++++..++.||+||||.||++++++.|+..+......||+++.+.+|+++++.+.+|+||+|||
T Consensus 249 ~~v~~~~~~~~~~~~~~~~~~~~~~pf~rity~ea~~~~~~~~~~~~~~~~~~~g~~l~~~~e~~l~~~~~~p~fv~d~P 328 (435)
T 2xgt_A 249 DRLLADEEAKKLLEHINPKFQPPERPFLRMEYKDAIKWLQEHNVENEFGNTFTYGEDIAEAAERFMTDTINKPILLNRFP 328 (435)
T ss_dssp HHHHTSHHHHHHHHHHSTTCCCCCSSCEEEEHHHHHHHHHHTTCBCTTSCBCCTTSCCCHHHHHHHHHHHTSCEEEECCB
T ss_pred HHHhccccchhhhhhccccccccCCCceEEEHHHHHHHHHhcCCCcccccccchhhHHHHHHHHHHHHhcCCcEEEECCC
Confidence 999876432 234445555444579999999999999988887655444567899999999999999999999999999
Q ss_pred CCCCCCCCccCCCCcCceeEEEEEeCCcceeeeceeccCCHHHHHHHHHHcCCCCCCCcchHHHhhcCCCCccceecchh
Q psy8087 347 ADIKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGIDPAPYYWYTDQRKYGSTPHGGYGLGLE 426 (658)
Q Consensus 347 ~~~~pfy~~~~~~~~~~~~~fdL~~~G~~Ei~~G~~r~~d~~~~~~~~~~~g~~~~~~~~yl~a~~~G~pP~gG~GiGid 426 (658)
.+++||||+.+++||++++|||||++|+|||+|||+|+|||++|++||++.|+++++++|||+|++||+|||||||||+|
T Consensus 329 ~~~~~f~a~~~~~~p~~~~~fdl~~~G~~Ei~~G~~r~~d~~~q~~r~~~~g~~~~~~~~yl~a~~yG~pPhgG~glGiD 408 (435)
T 2xgt_A 329 SEIKAFYMQRDAQDNTLTESVDLLMPGVGEIVGGSMRIWKFDELSKAFKNVEIDPKPYYWYLDQRLYGTCPHGGYGLGLE 408 (435)
T ss_dssp GGGSCTTBCBCSSCTTBBSEEEEEETTTEEEEEEEEBCCCHHHHHHHHHHHTCCCGGGHHHHHHHHSSCCCEEEEEEEHH
T ss_pred hhhCcccCCCCCCCcCeEEEEEEEcCCceEEEeeeEEeCCHHHHHHHHHHcCCCHHHHHHHHHHHhCCCCCCceEEEhHH
Confidence 99999999999999999999999999988999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccCcchhhHHHHH
Q psy8087 427 RVLCWLLNQYHVRDKYQLIAK 447 (658)
Q Consensus 427 RL~m~l~g~~~Irdvi~f~~k 447 (658)
||+|+|||.+||||||+||..
T Consensus 409 RLvmll~g~~~Irdvi~FPr~ 429 (435)
T 2xgt_A 409 RFICWLTNTNHIRDVCLYPRF 429 (435)
T ss_dssp HHHHHHHTCSCGGGGSSSCCB
T ss_pred HHHHHHcCCCcHHhEecccCC
Confidence 999999999999999999854
|
| >3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-95 Score=797.65 Aligned_cols=383 Identities=26% Similarity=0.424 Sum_probs=340.8
Q ss_pred CccccccccccCCCccCCcEEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccch--hhh-hhcCCCccEEEEEEE
Q psy8087 53 SPCEVGYITCEGPAGYIITNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILCQ--TEH-ALLLSTESSVQFRGR 129 (658)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~~--~~~-~~~l~~es~V~v~G~ 129 (658)
+++.++++... ..|++|+|+|||+++|.+|| ++|++|||++|.||||++++... .+. ...|+.||+|.|+|.
T Consensus 3 rt~~~~~l~~~----~~g~~V~v~Gwv~~~R~~g~-~~Fi~LrD~~g~iQ~v~~~~~~~~~~~~~~~~l~~~~~V~V~G~ 77 (438)
T 3nem_A 3 RTHYSSEITEE----LNGQKVKVAGWVWEVKDLGG-IKFLWIRDRDGIVQITAPKKKVDPELFKLIPKLRSEDVVAVEGV 77 (438)
T ss_dssp CSCCGGGCCGG----GTTCEEEEEEEEEEEEEETT-EEEEEEEETTEEEEEEEETTTSCHHHHHHGGGCCTTCEEEEEEE
T ss_pred eEEEHHHcchh----cCCCEEEEEEEEEEEecCCC-eEEEEEEECCeeEEEEEeCCcCCHHHHHHHhcCCCCCEEEEEEE
Confidence 45667888554 57899999999999999985 99999999999999999976532 232 357999999999999
Q ss_pred eEeCCC--CccceEecC-----------C---------------CceeEEeecCCccc---------CchHHHhhhCCcE
Q psy8087 130 IEKVPE--ENMKVQLIH-----------P---------------SSYAIVWLGDLKQG---------GYPPEVSLANGIA 172 (658)
Q Consensus 130 l~~~p~--~~~d~~l~~-----------p---------------~~R~l~lr~~~~~~---------~~iR~fl~~~gF~ 172 (658)
|.+++. +.+++.++. | ++||||||++..++ ++||+||.++||+
T Consensus 78 v~~~~~~~~~~el~~~~i~vl~~~~~~lP~~~~~~~~~~~e~r~~~R~Ldlr~~~~~~~~~~Rs~i~~~iR~f~~~~gF~ 157 (438)
T 3nem_A 78 VNFTPKAKLGFEILPEKIVVLNRAETPLPLDPTGKVKAELDTRLDNRFMDLRRPEVMAIFKIRSSVFKAVRDFFHENGFI 157 (438)
T ss_dssp EEECTTSTTSEEEEEEEEEEEECBCSSCSSCTTSSSCCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCE
T ss_pred EEeCCCCCCcEEEEEEEEEEEecCCCCCCCCccccccCCHHHHhhchHHHhcCHHHHHHHHHHHHHHHHHHHHHHHCCcE
Confidence 999886 433332210 1 24999999876544 6999999999999
Q ss_pred EEcCCccccccCCCCccceeeccCCcceeeccCHHHHHHHhcc-cCCcEEEEeeeeecCCCCCccCcceeeeeeeEeecC
Q psy8087 173 KVTPPTLVQTQVEGGSTLFSLNFFGEPAYLTQSSQLYLETCLP-ALGDVYCIAQSYRAENSRTRRHLAEYTHVEAECAFL 251 (658)
Q Consensus 173 EV~TPiL~~~~~eG~~~~F~~~~~~~~~~L~~Spqlylk~li~-g~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~a~~ 251 (658)
||+||+|+++++|||++.|+++|||+++||+||||||||+|++ |++||||||||||||+++++||||||||||+||+|+
T Consensus 158 EVeTPiL~~~~~eg~~~~f~~~~~~~~~yL~~Spql~~q~l~~~g~~rvf~i~~~FR~E~~~t~RH~pEFt~le~e~a~~ 237 (438)
T 3nem_A 158 EIHTPKIIATATEGGTELFPMKYFEEDAFLAQSPQLYKQIMMASGLDRVYEIAPIFRAEEHNTTRHLNEAWSIDSEMAFI 237 (438)
T ss_dssp ECCCCSEESSCSSCSSSCCEEEETTEEEEECSCSHHHHHHGGGTTCCEEEEEEEEECCCSSCCTTCCSEEEEEEEEEESC
T ss_pred EEeCCEEecCCCCCCccceeEeeCCccEEEecChHHHHHHHHhcCCCceEEEcceEECCCCCCcccccceeeeeeeeccC
Confidence 9999999988999999999999999999999999999999986 899999999999999999999999999999999999
Q ss_pred C-HHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCCCcceeeHHHHHHHHHHcCCCCCCCCCcccCCCCCCchhh
Q psy8087 252 T-FDDLLDKLEDLICDTVDRVMATHGDLVRQMNPNFEPPARPFLRMNYADAIEYLRKHEIRKPDNTEYEFGEDIPEMPER 330 (658)
Q Consensus 252 d-~~~~m~~~e~li~~i~~~~~~~~~~~~~~~~~~~~~~~~pf~rit~~ea~~~l~~~g~~~~~~~~~~~g~~l~~~~e~ 330 (658)
| ++|+|+++|+||+++++.+.+.+...+..++.++..++.||+||||.||++++++.|++ ..||.+++..+|+
T Consensus 238 ~~~~d~m~~~E~li~~~~~~v~~~~~~~l~~~~~~l~~~~~pf~rity~eai~~l~~~g~~------~~~~~dl~~~~e~ 311 (438)
T 3nem_A 238 EDEEEVMSFLERLVAHAINYVREHNAKELDILNFELEEPKLPFPRVSYDKALEILGDLGKE------IPWGEDIDTEGER 311 (438)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHCHHHHHHTTCCCCCCCSSCCEEEHHHHHHHHHHTTCC------CCTTSCCCHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhhhhhhHhhcccccccCCCCceEEEHHHHHHHHHHcCCC------CCCCCCCCcHHHH
Confidence 8 99999999999999999998877555555666654456799999999999999888864 3578899999999
Q ss_pred hhhccc-----CCcEEEEeCCCCCCCCCCccCCCCcCceeEEEEEeCCcceeeeceeccCCHHHHHHHHHHcCCCCCCCc
Q psy8087 331 KMTDQI-----NRPIMLCRFPADIKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGIDPAPYY 405 (658)
Q Consensus 331 ~l~~~~-----~~p~fi~~~P~~~~pfy~~~~~~~~~~~~~fdL~~~G~~Ei~~G~~r~~d~~~~~~~~~~~g~~~~~~~ 405 (658)
+|.+.+ .+|+||+|||.+++||||+.+++||++++|||||++| +||+|||+|+|||++|++||+++|++++.|+
T Consensus 312 ~l~~~~~~~~~~~p~fi~~yP~~~~pfy~k~~~~~p~~~~rfdL~~~G-~Ei~nG~~el~d~~~l~~r~~~~g~~~~~~~ 390 (438)
T 3nem_A 312 LLGKYMMENENAPLYFLYQYPSEAKPFYIMKYDNKPEICRAFDLEYRG-VEISSGGQREHRHDILVEQIKEKGLNPESFE 390 (438)
T ss_dssp HHHHHHHHHHCCSEEEEESCBGGGSCTTBCBCTTSTTBBSEEEEEETT-EEEEEEEEBCCCHHHHHHHHHHTTCCGGGGH
T ss_pred HHHHHhhhhcCCCCEEEECCchhhCccccccCCCCCCceEEEEEEECC-EEEEeCeeecCCHHHHHHHHHHcCCChhHHH
Confidence 988876 7899999999999999999999999999999999999 5999999999999999999999999999999
Q ss_pred chHHHhhcCCCCccceecchhHHHHHHhcccCcchhhHHHHH
Q psy8087 406 WYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRDKYQLIAK 447 (658)
Q Consensus 406 ~yl~a~~~G~pP~gG~GiGidRL~m~l~g~~~Irdvi~f~~k 447 (658)
|||+|++||||||||||||||||+|++||.+||||||+||..
T Consensus 391 ~yl~a~~~G~pP~~G~GlGidRLvm~l~g~~~Irdvi~FPr~ 432 (438)
T 3nem_A 391 FYLKAFRYGMPPHGGFGLGAERLIKQMLDLPNIREVILFPRD 432 (438)
T ss_dssp HHHHTTSSCCCCEEEEEEEHHHHHHHHTTCSCGGGGSSSCCC
T ss_pred HHHHHHHcCCCCceEEEEhHHHHHHHHhCCCcHHHcccCCCC
Confidence 999999999999999999999999999999999999999853
|
| >3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-92 Score=790.46 Aligned_cols=394 Identities=16% Similarity=0.232 Sum_probs=325.9
Q ss_pred CCCCC-CCCccccccccccC-----CCccCCcEEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccc---hhhh--
Q psy8087 46 LPFPL-FPSPCEVGYITCEG-----PAGYIITNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILC---QTEH-- 114 (658)
Q Consensus 46 ~~~~~-~~~~~~~~~~~~~~-----~~~~~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~---~~~~-- 114 (658)
.|||. |+.++++.++.+.. ++...+++|+|+|||+++|.+||+++|++|||++|.||||++++.. +.+.
T Consensus 25 ~pyp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~Grv~~~R~~gkk~~F~~LrD~sg~iQvv~~~~~~~~~~~~~~~ 104 (521)
T 3bju_A 25 DPYPHKFHVDISLTDFIQKYSHLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNYKSEEEFIHI 104 (521)
T ss_dssp CSSCSCCCCCSCHHHHHHHHTTCCTTCBCSSCCEEEEEEEEEEEESSSSEEEEEEEETTEEEEEEEEGGGSSCHHHHHHH
T ss_pred CCCCCcCcCccchHHHHHHhhhhccccccCCcEEEEEEEEEEEecCCCCcEEEEEEECCEEEEEEEECCccCCHHHHHHH
Confidence 35654 66677777764311 1223478899999999999999779999999999999999987643 2333
Q ss_pred hhcCCCccEEEEEEEeEeCCCCccceEecC-----------C-------------CceeEEeecCCccc----------C
Q psy8087 115 ALLLSTESSVQFRGRIEKVPEENMKVQLIH-----------P-------------SSYAIVWLGDLKQG----------G 160 (658)
Q Consensus 115 ~~~l~~es~V~v~G~l~~~p~~~~d~~l~~-----------p-------------~~R~l~lr~~~~~~----------~ 160 (658)
...++.||+|.|+|.|.+++.+.+++.++. | ++||||||++...+ +
T Consensus 105 ~~~l~~gd~V~V~G~v~~t~~ge~ei~~~~i~~l~~~~~~lP~~~~~~~~~e~r~r~RyLdLr~~~~~~~~~r~Rs~i~~ 184 (521)
T 3bju_A 105 NNKLRRGDIIGVQGNPGKTKKGELSIIPYEITLLSPCLHMLPHLHFGLKDKETRYRQRYLDLILNDFVRQKFIIRSKIIT 184 (521)
T ss_dssp HHHCCTTCEEEEEEEEEECTTCCEEEEEEEEEEEECCCSCCCCC----CCHHHHHHCHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HhcCCCCCEEEEEEEEEecCCCCEEEEEeEEEEeecCCCCCCCccccccChhhhhhhhhhhHhcCHHHHHHHHHHHHHHH
Confidence 246999999999999999988764433221 1 24899999544322 6
Q ss_pred chHHHhhhCCcEEEcCCccccccCCCC-cccee--eccCCcceeeccCHHHHHHHhcc-cCCcEEEEeeeeecCCCCCcc
Q psy8087 161 YPPEVSLANGIAKVTPPTLVQTQVEGG-STLFS--LNFFGEPAYLTQSSQLYLETCLP-ALGDVYCIAQSYRAENSRTRR 236 (658)
Q Consensus 161 ~iR~fl~~~gF~EV~TPiL~~~~~eG~-~~~F~--~~~~~~~~~L~~Spqlylk~li~-g~~rvfeI~~~FR~E~~~~~r 236 (658)
+||+||.++||+||+||+|++ .++|| +++|. +++||+++||+||||||||+|++ |++||||||||||||++++ |
T Consensus 185 ~iR~f~~~~gF~EVeTPiL~~-~~gGa~a~~F~t~~~~~~~~~yL~~SpqL~lk~liv~g~~rVyeig~~FR~E~~~t-r 262 (521)
T 3bju_A 185 YIRSFLDELGFLEIETPMMNI-IPGGAVAKPFITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDL-T 262 (521)
T ss_dssp HHHHHHHHTTCEECCCCSEES-SCCSSSCCCCEEEETTTTEEEEECSCSHHHHHHHHHTTCCEEEEEEEEECCSCCBT-T
T ss_pred HHHHHHHHCCCEEEeCceeec-cCCCccccceeeecccCCcceEeeCCHHHHHHHHHhcCcCceEEEEcceeCCCCCC-c
Confidence 999999999999999999975 45555 68994 48999999999999999999887 7999999999999999988 9
Q ss_pred CcceeeeeeeEeecCCHHHHHHHHHHHHHHHHHHHhhcccccccccCCCC----CCCCCCcceeeHHHHHHHHHHcCCCC
Q psy8087 237 HLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGDLVRQMNPNF----EPPARPFLRMNYADAIEYLRKHEIRK 312 (658)
Q Consensus 237 Hl~EFt~lE~e~a~~d~~~~m~~~e~li~~i~~~~~~~~~~~~~~~~~~~----~~~~~pf~rit~~ea~~~l~~~g~~~ 312 (658)
|||||||||+||||+||+|+|+++|+||+++++.+.+++...+...+++. ..++.||+|+||.||++.+. |++.
T Consensus 263 H~pEFtmlE~e~af~d~~dlm~l~E~li~~v~~~v~~~~~~~~~~~~~d~~~~~~d~~~pf~rit~~eai~~~~--g~~~ 340 (521)
T 3bju_A 263 HNPEFTTCEFYMAYADYHDLMEITEKMVSGMVKHITGSYKVTYHPDGPEGQAYDVDFTPPFRRINMVEELEKAL--GMKL 340 (521)
T ss_dssp BCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHHSSSEEEECTTCTTSCCEEEECCSSCEEEEHHHHHHHHH--TSCC
T ss_pred cchhhhhhhhhhhcCCHHHHHHHHHHHHHHHHHHHhCCceEEecccccccccceeccCCCcccccHHHHHHHHh--CCCC
Confidence 99999999999999999999999999999999999887643332222211 01347999999999999864 4443
Q ss_pred CC---C---------------------CCcccCCCCCCchhhhhhcccCCcEEEEeCCCCCCCCCCccCCCCcCceeEEE
Q psy8087 313 PD---N---------------------TEYEFGEDIPEMPERKMTDQINRPIMLCRFPADIKSFYMSKCPENPALTESVD 368 (658)
Q Consensus 313 ~~---~---------------------~~~~~g~~l~~~~e~~l~~~~~~p~fi~~~P~~~~pfy~~~~~~~~~~~~~fd 368 (658)
+. . ...+||..++.++++++++.+.+|+||+|||.+++|| ++++++||++++|||
T Consensus 341 ~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~e~~ve~~l~~P~fI~dyP~~~spl-a~~~~~dp~~~~rfd 419 (521)
T 3bju_A 341 PETNLFETEETRKILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTCINPTFICDHPQIMSPL-AKWHRSKEGLTERFE 419 (521)
T ss_dssp CCGGGTTSHHHHHHHHHHHHHTTCCCCSCCCHHHHHHHHHHHHTGGGCCSCEEEECCBGGGCTT-BCBCSSSTTBBSEEE
T ss_pred CccccCCcHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEECCccccCcc-cccCCCCCCeeeeEE
Confidence 21 0 1234555666788999999999999999999999999 788889999999999
Q ss_pred EEeCCcceeeeceeccCCHHHHHHHHHHc------CCCCCC--CcchHHHhhcCCCCccceecchhHHHHHHhcccCcch
Q psy8087 369 VLFPNVGEVIGGSMRIWDPEELLAGYKRE------GIDPAP--YYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRD 440 (658)
Q Consensus 369 L~~~G~~Ei~~G~~r~~d~~~~~~~~~~~------g~~~~~--~~~yl~a~~~G~pP~gG~GiGidRL~m~l~g~~~Ird 440 (658)
||++|. ||||||+|+|||.+|++||+++ |.+++. ++|||+|++||||||||||||||||+|+|||.+||||
T Consensus 420 L~i~G~-Ei~ng~~el~Dp~~qr~rf~~q~~~~~~g~~e~~~~d~~yl~al~yG~PP~gG~GlGiDRLvMlltg~~~IRd 498 (521)
T 3bju_A 420 LFVMKK-EICNAYTELNDPMRQRQLFEEQAKAKAAGDDEAMFIDENFCTALEYGLPPTAGWGMGIDRVAMFLTDSNNIKE 498 (521)
T ss_dssp EEETTE-EEEEEEEBCCCHHHHHHHHHHHHHHHHHTCTTSCCCCHHHHHHHTTTCCSEEEEEEEHHHHHHHHTTCSSGGG
T ss_pred EEEcce-eeecChhhhCCHHHHHHHHHHHHHHHhcCCChhhcchHHHHHHHhcCCCCceeEEEcHHHHHHHHhCCCcHHh
Confidence 999995 9999999999999999999876 777765 7999999999999999999999999999999999999
Q ss_pred hhHHH
Q psy8087 441 KYQLI 445 (658)
Q Consensus 441 vi~f~ 445 (658)
||+||
T Consensus 499 Vi~FP 503 (521)
T 3bju_A 499 VLLFP 503 (521)
T ss_dssp SCSSC
T ss_pred EecCC
Confidence 99995
|
| >4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-92 Score=784.30 Aligned_cols=395 Identities=20% Similarity=0.295 Sum_probs=325.4
Q ss_pred CCCC-CCCccccccccccCCCc------cCCcEEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccch--hhh-hh
Q psy8087 47 PFPL-FPSPCEVGYITCEGPAG------YIITNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILCQ--TEH-AL 116 (658)
Q Consensus 47 ~~~~-~~~~~~~~~~~~~~~~~------~~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~~--~~~-~~ 116 (658)
|||. |.++++++++....... ..|++|+|+|||+++|.+|| ++|++|||++|.||||++++... .+. ..
T Consensus 56 ~yp~~~~~t~~~~~~~~~~~~~~~~~~~~~g~~V~v~GwV~~~R~~Gk-~~Fi~LrD~sg~iQvv~~~~~~~~~~~~~~~ 134 (529)
T 4ex5_A 56 AYPNDFQPTHHAADLQTAYADADKEALEAKSLEVAIAGRMMLKRVMGK-ASFATVQDGSGQIQFFVTPADVGAETYDAFK 134 (529)
T ss_dssp SSCCCCCCCCCHHHHHHHTTTCCHHHHHHHCCEEEEEEEEEEEEEETT-EEEEEEECSSCEEEEEECHHHHCHHHHHHHH
T ss_pred CCCCCCcCceEHHHHHHHhhccCccccccCCcEEEEEEEEEeeecCCC-eEEEEEEeCCeeEEEEEECCcCCHHHHHHHh
Confidence 7887 77888888886543211 12788999999999999985 99999999999999999875432 232 24
Q ss_pred cCCCccEEEEEEEeEeCCCCccceEecC-----------C-------------CceeEEeecCCccc----------Cch
Q psy8087 117 LLSTESSVQFRGRIEKVPEENMKVQLIH-----------P-------------SSYAIVWLGDLKQG----------GYP 162 (658)
Q Consensus 117 ~l~~es~V~v~G~l~~~p~~~~d~~l~~-----------p-------------~~R~l~lr~~~~~~----------~~i 162 (658)
.++.||+|.|+|.|.+++.+.+++.++. | ++||||||++...+ ++|
T Consensus 135 ~l~~gd~V~V~G~v~~t~~gelel~~~~i~vLs~a~~plP~k~~~l~d~e~r~r~RyLdLr~~~~~~~~fr~Rs~i~~~i 214 (529)
T 4ex5_A 135 KWDLGDIVAARGVLFRTNKGELSVKCTQLRLLAKALRPLPDKFHGLADQETRYRQRYVDLIVTPETRTTFRARTKAIASI 214 (529)
T ss_dssp TCCTTCEEEEEEEEEECTTSCEEEEEEEEEEEECCSSCCCC------CTTHHHHTHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEEEEEEEcCCCcEEEEEEEEEEEecCCCCCCccccCCcChhhhhhhhhhhhhcCHHHHHHHHHHHHHHHHH
Confidence 6999999999999999998764433221 1 14899998553322 699
Q ss_pred HHHhhhCCcEEEcCCccccccCCCC-ccce--eeccCCcceeeccCHHHHHHHhcc-cCCcEEEEeeeeecCCCCCccCc
Q psy8087 163 PEVSLANGIAKVTPPTLVQTQVEGG-STLF--SLNFFGEPAYLTQSSQLYLETCLP-ALGDVYCIAQSYRAENSRTRRHL 238 (658)
Q Consensus 163 R~fl~~~gF~EV~TPiL~~~~~eG~-~~~F--~~~~~~~~~~L~~Spqlylk~li~-g~~rvfeI~~~FR~E~~~~~rHl 238 (658)
|+||.++||+||+||+|+ ++++|| +++| ++++|++++||+||||||||+|++ |++||||||||||||++++ |||
T Consensus 215 R~ff~~~gFlEVeTPiL~-~~~gGA~a~pF~t~~n~~~~~~yL~~SpqLylk~L~v~G~~rVyeIg~~FR~E~~~~-rH~ 292 (529)
T 4ex5_A 215 RKFMGDADFMEVETPMLH-PIPGGAAAKPFVTHHNALDMEMFLRIAPELYLKRLIVGGFERVFEINRNFRNEGVSP-RHN 292 (529)
T ss_dssp HHHHHHTTCEECCCCSEE-SSCCSSSSCCCEEEETTTTEEEEECSCSHHHHHHHHHTTCSEEEEEEEEECCSCCBT-TBC
T ss_pred HHHHHHCCCEEEeCCeee-ccCCCCcccccccccccCCcceecccCHHHHHHHHHhcCCCcEEEeehheecCCCCC-Ccc
Confidence 999999999999999997 456565 4788 568999999999999999999887 8999999999999999985 999
Q ss_pred ceeeeeeeEeecCCHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCCCcceeeHHHHHHHHHH-----------
Q psy8087 239 AEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGDLVRQMNPNFEPPARPFLRMNYADAIEYLRK----------- 307 (658)
Q Consensus 239 ~EFt~lE~e~a~~d~~~~m~~~e~li~~i~~~~~~~~~~~~~~~~~~~~~~~~pf~rit~~ea~~~l~~----------- 307 (658)
||||||||||||+||+|+|+++|+||+++++.+.+++...+....+++ +.||+||||.||++++..
T Consensus 293 pEFtmlE~e~af~d~~dlm~l~E~li~~v~~~v~~~~~~~~~~~~id~---~~pf~Rity~eAi~~~~~~~~~~~~~~~~ 369 (529)
T 4ex5_A 293 PEFTMMEFYAAYTDYRWLMDFTERLIRQAAVDALGTATIQYQGRELDL---AQPFHRLTITQAIQKYAPSYTDGQLSDDA 369 (529)
T ss_dssp SEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHHSCSEEEETTEEEET---TSCCEEEEHHHHHHHHCTTSCHHHHTCHH
T ss_pred cHhHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHhCcCceecCceeecc---CCCceEEEHHHHHHHHhCCCChhhcCCHH
Confidence 999999999999999999999999999999999887543332222333 579999999999987532
Q ss_pred --------cCCCCCCCC--CcccCCCCCCchhhhhhcccCCcEEEEeCCCCCCCCCCccCCCCcCceeEEEEEeCCccee
Q psy8087 308 --------HEIRKPDNT--EYEFGEDIPEMPERKMTDQINRPIMLCRFPADIKSFYMSKCPENPALTESVDVLFPNVGEV 377 (658)
Q Consensus 308 --------~g~~~~~~~--~~~~g~~l~~~~e~~l~~~~~~p~fi~~~P~~~~pfy~~~~~~~~~~~~~fdL~~~G~~Ei 377 (658)
.|++.+... .+.+|+.++..++.++++.+++|+||+|||.+++|| ++.+++||++++|||||++|+ ||
T Consensus 370 ~l~~~~~~~g~~~~~~~~~~~~~g~l~~e~~~~~vE~~l~~P~FI~dyP~~~spl-ak~~~~~p~~~~rFeL~i~G~-Ei 447 (529)
T 4ex5_A 370 FLRSELKRLGVDVTQPAFLNAGIGALQLALFEETAEAQLWEPTFIIDYPIEVSPL-ARESDTVAGITERFELFITGR-EI 447 (529)
T ss_dssp HHHHHHHHTTCCTTSGGGTTCCHHHHHHHHHHHHTGGGCCSCEEEEEEEGGGCTT-BCBCSSSTTEEEEEEEEETTE-EE
T ss_pred HHHHHHHHcCCCCCCcccCCCCHHHHHHHHHHHHhccccCCCEEEECCchhhCCC-cccCCCCCCceEEEEEEECCE-EE
Confidence 233322100 234556667778889999999999999999999999 588899999999999999996 99
Q ss_pred eeceeccCCHHHHHHHHHHc------CCCCCC--CcchHHHhhcCCCCccceecchhHHHHHHhcccCcchhhHHHHHhh
Q psy8087 378 IGGSMRIWDPEELLAGYKRE------GIDPAP--YYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRDKYQLIAKAQ 449 (658)
Q Consensus 378 ~~G~~r~~d~~~~~~~~~~~------g~~~~~--~~~yl~a~~~G~pP~gG~GiGidRL~m~l~g~~~Irdvi~f~~k~~ 449 (658)
+|||+|+|||++|++||+++ |.+++. ++|||+|++||||||||||||||||+|+|||.+||||||+|| .
T Consensus 448 anG~~el~Dp~~q~~rf~~q~~~~~~gd~ea~~~De~yl~aleyG~PP~gG~GlGiDRLvMlltg~~~IRdVi~FP---~ 524 (529)
T 4ex5_A 448 ANGFSELNDPEDQAARFKKQVEQKDAGDEEAMFFDADYIRALEYGMPPTGGCGIGIDRLVMLLTDSPTIRDVLLFP---H 524 (529)
T ss_dssp EEEEEBCCCHHHHHHHHHHHHHHHHTTCTTSCCCCHHHHHHHHTCCCCEEEEEEEHHHHHHHHHTCSSGGGGCSSC---C
T ss_pred ecchhccCCHHHHHHHHHHHHHHHhcCCcccccchHHHHHHHHcCCCCCcEEEEeHHHHHHHHcCCCcHHHeecCC---c
Confidence 99999999999999999764 444443 389999999999999999999999999999999999999994 5
Q ss_pred hhh
Q psy8087 450 LKK 452 (658)
Q Consensus 450 lk~ 452 (658)
+|+
T Consensus 525 ~r~ 527 (529)
T 4ex5_A 525 LRR 527 (529)
T ss_dssp CCC
T ss_pred cCC
Confidence 553
|
| >1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-91 Score=773.09 Aligned_cols=392 Identities=21% Similarity=0.311 Sum_probs=319.0
Q ss_pred CCCCC-CCCccccccccccCCCc------cCCcEEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccc--hhhh--
Q psy8087 46 LPFPL-FPSPCEVGYITCEGPAG------YIITNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILC--QTEH-- 114 (658)
Q Consensus 46 ~~~~~-~~~~~~~~~~~~~~~~~------~~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~--~~~~-- 114 (658)
.|||. |.++++++++.+..... ..|++|+|+|||+++|.+|| ++|++|||++|.||||++++.. +.+.
T Consensus 33 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~Gwv~~~R~~gk-~~F~~LrD~sg~iQvv~~~~~~~~~~~~~~ 111 (504)
T 1e1o_A 33 VAFPNDFRRDHTSDQLHEEFDAKDNQELESLNIEVSVAGRMMTRRIMGK-ASFVTLQDVGGRIQLYVARDSLPEGVYNDQ 111 (504)
T ss_dssp CSSCCCCCCSCCHHHHHHHHTTCCHHHHHHHCCEEEEEEEEEEEEEETT-EEEEEEEETTEEEEEEEETTTSSTTHHHHT
T ss_pred CCCCCCCcCceEHHHHHHHhhccCccccccCCCEEEEEEEEEEEecCCC-cEEEEEEECCeeEEEEEECCcCCHHHHHHH
Confidence 36665 66777888886542110 12788999999999999985 8999999999999999987643 2232
Q ss_pred hhcCCCccEEEEEEEeEeCCCCccceEecC-----------C-------------CceeEEeecCCc-cc---------C
Q psy8087 115 ALLLSTESSVQFRGRIEKVPEENMKVQLIH-----------P-------------SSYAIVWLGDLK-QG---------G 160 (658)
Q Consensus 115 ~~~l~~es~V~v~G~l~~~p~~~~d~~l~~-----------p-------------~~R~l~lr~~~~-~~---------~ 160 (658)
...++.||+|.|+|.|.+++.+.+++.++. | ++||||||++.. ++ +
T Consensus 112 ~~~l~~g~~V~V~G~v~~~~~ge~ei~~~~i~vl~~a~~plP~k~~~~~~~e~r~r~RyLdL~~~~~~~~~~r~Rs~i~~ 191 (504)
T 1e1o_A 112 FKKWDLGDIIGARGTLFKTQTGELSIHCTELRLLTKALRPLPDKFHGLQDQEVRYRQRYLDLIANDKSRQTFVVRSKILA 191 (504)
T ss_dssp GGGCCTTCEEEEEEEEEECTTCCEEEEEEEEEEEECCSSCCCC-------TTHHHHTHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HhcCCCCCEEEEEEEEEecCCceEEEEEEEEEEecccCCCCCccccCCcChhhhhhccchhhhcCHHHHHHHHHHHHHHH
Confidence 357999999999999999988764433221 1 148999974433 22 6
Q ss_pred chHHHhhhCCcEEEcCCccccccCCCC-cccee--eccCCcceeeccCHHHHHHHhcc-cCCcEEEEeeeeecCCCCCcc
Q psy8087 161 YPPEVSLANGIAKVTPPTLVQTQVEGG-STLFS--LNFFGEPAYLTQSSQLYLETCLP-ALGDVYCIAQSYRAENSRTRR 236 (658)
Q Consensus 161 ~iR~fl~~~gF~EV~TPiL~~~~~eG~-~~~F~--~~~~~~~~~L~~Spqlylk~li~-g~~rvfeI~~~FR~E~~~~~r 236 (658)
+||+||.++||+||+||+|+ ++++|| +++|. +++||.++||+||||||||+|++ |++||||||||||||++++ |
T Consensus 192 ~iR~f~~~~gFlEVeTPiL~-~~~~Ga~ar~F~t~~~~~~~~~yL~~SpqLylk~L~v~G~~rVyeIg~~FR~E~~~~-r 269 (504)
T 1e1o_A 192 AIRQFMVARGFMEVETPMMQ-VIPGGASARPFITHHNALDLDMYLRIAPELYLKRLVVGGFERVFEINRNFRNEGISV-R 269 (504)
T ss_dssp HHHHHHHTTTCEECCCCSEE-SSCCSSCCCCCEEEETTTTEEEEECSCSHHHHHHHHHHTCCEEEEEEEEECCCCCCC--
T ss_pred HHHHHHHHCCCEEEECCeEE-ecCCCCcccceEeccCCCCceEEeccCHHHHHHHHhhcCCCcEEEEcccccCCCCCc-c
Confidence 99999999999999999997 556665 57884 48999999999999999999987 7999999999999999987 9
Q ss_pred CcceeeeeeeEeecCCHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCCCcceeeHHHHHHHHHHcCCCCCCC-
Q psy8087 237 HLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGDLVRQMNPNFEPPARPFLRMNYADAIEYLRKHEIRKPDN- 315 (658)
Q Consensus 237 Hl~EFt~lE~e~a~~d~~~~m~~~e~li~~i~~~~~~~~~~~~~~~~~~~~~~~~pf~rit~~ea~~~l~~~g~~~~~~- 315 (658)
|||||||||+||+|+|++|+|+++|+||+++++.+.+++...+....++ ++.||+||||.||++.+... ++..+.
T Consensus 270 H~pEFt~lE~e~af~d~~dlm~l~E~li~~~~~~v~~~~~i~~~~~~i~---~~~pf~rity~eAi~~~~~d-~d~~~~~ 345 (504)
T 1e1o_A 270 HNPEFTMMELYMAYADYHDLIELTESLFRTLAQEVLGTTKVTYGEHVFD---FGKPFEKLTMREAIKKYRPE-TDMADLD 345 (504)
T ss_dssp CCSEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHHSSSEEEETTEEEE---TTSCCEEEEHHHHHHHHSTT-CCGGGGG
T ss_pred ccCceeeeeeeecCCCHHHHHHHHHHHHHHHHHHHhCCceeeeCCEeec---cCCCceEEeHHHHHHHHcCC-CCccccC
Confidence 9999999999999999999999999999999999988764222111123 34799999999999986320 222110
Q ss_pred -----------------CCcccCCCCCCchhhhhhcccCCcEEEEeCCCCCCCCCCccCCCCcCceeEEEEEeCCcceee
Q psy8087 316 -----------------TEYEFGEDIPEMPERKMTDQINRPIMLCRFPADIKSFYMSKCPENPALTESVDVLFPNVGEVI 378 (658)
Q Consensus 316 -----------------~~~~~g~~l~~~~e~~l~~~~~~p~fi~~~P~~~~pfy~~~~~~~~~~~~~fdL~~~G~~Ei~ 378 (658)
..+.+|+.+...++.++++.+.+|+||+|||.+++|| ++++++||+++++||||++|+ ||+
T Consensus 346 ~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~ve~~~~~p~fV~dyP~~~~pf-~~~~~~dp~~~~~fDL~i~G~-Ei~ 423 (504)
T 1e1o_A 346 NFDAAKALAESIGITVEKSWGLGRIVTEIFDEVAEAHLIQPTFITEYPAEVSPL-ARRNDVNPEITDRFEFFIGGR-EIG 423 (504)
T ss_dssp SHHHHHHHHHHTTCCCCTTCCHHHHHHHHHHHHTGGGCCSCEEEECCBGGGCTT-BCBCSSCTTBBSEEEEEETTE-EEE
T ss_pred CHHHHHHHHHHcCCCCCCCcCHhHHHHHHHHHHhhccCCCeEEEECCCcccCcC-cCCCCCCCCceEEEEEEECCe-EEc
Confidence 0123344456678889999999999999999999999 788899999999999999998 999
Q ss_pred eceeccCCHHHHHHHHHHc-----CCCCCC---CcchHHHhhcCCCCccceecchhHHHHHHhcccCcchhhHHHH
Q psy8087 379 GGSMRIWDPEELLAGYKRE-----GIDPAP---YYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRDKYQLIA 446 (658)
Q Consensus 379 ~G~~r~~d~~~~~~~~~~~-----g~~~~~---~~~yl~a~~~G~pP~gG~GiGidRL~m~l~g~~~Irdvi~f~~ 446 (658)
|||+|+|||++|++||+++ ..+++. ++|||+|++||||||||||||||||+|+|||.+||||||+||.
T Consensus 424 ~G~~el~d~~~q~~rf~~~~~~~~~~~~e~~~~d~~yl~al~yG~PPhgG~glGiDRLvmlltg~~~IRdVi~FPr 499 (504)
T 1e1o_A 424 NGFSELNDAEDQAERFQEQVNAKAAGDDEAMFYDEDYVTALEYGLPPTAGLGIGIDRMIMLFTNSHTIRDVILFPA 499 (504)
T ss_dssp EEEEBCCCHHHHHHHHHHHHHHHHTTCTTCCCCCHHHHHHHHHHCCSEEEEEEEHHHHHHHHHTCSSGGGTSSSCC
T ss_pred cceeeeCCHHHHHHHHHHHHHHhhcCChhhhhchHHHHHHHhcCCCCceeEEEcHHHHHHHHhCCCcHHhEeccCC
Confidence 9999999999999999874 124444 4899999999999999999999999999999999999999963
|
| >1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-90 Score=757.83 Aligned_cols=381 Identities=26% Similarity=0.438 Sum_probs=332.5
Q ss_pred ccccccccccCCCccCCcEEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccchhhh-hhcCCCccEEEEEEEeEe
Q psy8087 54 PCEVGYITCEGPAGYIITNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILCQTEH-ALLLSTESSVQFRGRIEK 132 (658)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~~~~~-~~~l~~es~V~v~G~l~~ 132 (658)
++.++++... ..|++|+|+|||+++|.+|| ++|++|||++|.||||++++. +.+. ...|+.||+|.|+|.|.+
T Consensus 4 ~~~~~~l~~~----~~~~~V~v~Gwv~~~R~~g~-~~F~~lrD~~g~iQ~v~~~~~-~~~~~~~~l~~~~~v~v~G~v~~ 77 (429)
T 1wyd_A 4 SHFIADVTPE----YDGKEVIWAGWVHLLRDLGG-KKFIILRDKTGLGQVVVDKNS-SAFGISQELTQESVIQVRGIVKA 77 (429)
T ss_dssp SSCTTTCCGG----GTTCEEEEEEEEEEEEEETT-EEEEEEEETTEEEEEEECTTS-TTHHHHTTCCTTCEEEEEEEEEE
T ss_pred EEEHHHhhHH----hCCCEEEEEEEEEEEecCCC-eEEEEEEECCeeEEEEEeCCh-HHHHHHHhCCCCCEEEEEEEEEe
Confidence 3445666442 57899999999999999986 999999999999999998653 3332 357999999999999999
Q ss_pred CCCC--ccceEecC-----------C---------------CceeEEeecCCccc---------CchHHHhhhCCcEEEc
Q psy8087 133 VPEE--NMKVQLIH-----------P---------------SSYAIVWLGDLKQG---------GYPPEVSLANGIAKVT 175 (658)
Q Consensus 133 ~p~~--~~d~~l~~-----------p---------------~~R~l~lr~~~~~~---------~~iR~fl~~~gF~EV~ 175 (658)
+|.+ .+++.+++ | ++||||||++..++ +++|+||.++||+||+
T Consensus 78 ~~~~~~~~el~~~~~~vl~~~~~~~P~~~~~~~~~~~e~r~~~R~Ldlr~~~~~~~~~~rs~i~~~ir~ff~~~gF~eV~ 157 (429)
T 1wyd_A 78 DKRAPRGIELHAEEITLLSKAKAPLPLDVSGKVKADIDTRLRERVLDLRRQEMQAVIKIQSLALKAFRETLYKEGFIEIF 157 (429)
T ss_dssp CSSSGGGEEEEEEEEEEEECCCSSCSSCSSSCCCCCHHHHHHTHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECC
T ss_pred cCCCCccEEEEEeEEEEeccCCCCCCCCccccccCChhHhhhccceeccCHHHHHHHHHHHHHHHHHHHHHhhCCCEEEE
Confidence 9875 33322210 1 14899999765443 5999999999999999
Q ss_pred CCccccccCCCCccceeeccCCcceeeccCHHHHHHHhcccCCcEEEEeeeeecCCCCCccCcceeeeeeeEeecCCHHH
Q psy8087 176 PPTLVQTQVEGGSTLFSLNFFGEPAYLTQSSQLYLETCLPALGDVYCIAQSYRAENSRTRRHLAEYTHVEAECAFLTFDD 255 (658)
Q Consensus 176 TPiL~~~~~eG~~~~F~~~~~~~~~~L~~Spqlylk~li~g~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~a~~d~~~ 255 (658)
||+|+.+.+||++++|.++|+|.++||+||||+|+|+++.|++|||+||||||||+++++||+|||||||+|++|.|++|
T Consensus 158 TP~l~~~~~e~~~~~f~~~~~~~~~~L~~Spql~~~~~~~g~~rvf~ig~~FR~E~~~~~RH~pEFtqle~e~~~~~~~d 237 (429)
T 1wyd_A 158 TPKIIASATEGGAQLFPVIYFGKEAFLAQSPQLYKELMAGVVERVFEVAPAWRAEESDTPFHLAEFISMDVEMAFADYND 237 (429)
T ss_dssp CCSEESSCSSTTCCCCEEEETTEEEEECSCCHHHHHHHHHHHSEEEEEEEEECCCCCCSSSCCSEEEEEEEEEETCCHHH
T ss_pred CCEEEeeCCCCCceeEEEecCCceEEecCCcHHHHHHHHhCcCceEEEcccccccCCccccccceeeEeeeeecCCCHHH
Confidence 99999888999999999999999999999999999995558999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCCCcceeeHHHHHHHHHHcCCCCCCCCCcccCCCCCCchhhhhhcc
Q psy8087 256 LLDKLEDLICDTVDRVMATHGDLVRQMNPNFEPPARPFLRMNYADAIEYLRKHEIRKPDNTEYEFGEDIPEMPERKMTDQ 335 (658)
Q Consensus 256 ~m~~~e~li~~i~~~~~~~~~~~~~~~~~~~~~~~~pf~rit~~ea~~~l~~~g~~~~~~~~~~~g~~l~~~~e~~l~~~ 335 (658)
+|+++|+|++++++.+.+++...+..++.++..++.||+||||.||++++++.|++ ..||+++...+|++|.+.
T Consensus 238 lm~~~e~ll~~l~~~~~~~~~~~l~~~~~~~~~l~~pf~rity~eA~~~~~~~g~~------~~~~~~l~~~~e~~l~~~ 311 (429)
T 1wyd_A 238 VMQLLEKILHNIVKTIKEEGKEELKILNYEPPEVKIPIKRLKYTEAIEILRSKGYN------IKFGDDIGTPELRILNEE 311 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHTCCCCCCCSSCEEEEHHHHHHHHHHSSCC------CCTTSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccchhhhhhcccccccCCCCccEEEHHHHHHHHHhcCCC------cccCcccCcHHHHHHHHH
Confidence 99999999999999998766444444443333235799999999999999888754 467888999999999888
Q ss_pred cC-CcEEEEeCCCCCCCCCCccCCCCcCceeEEEEEeCCcceeeeceeccCCHHHHHHHHHHcCCCCCCCcchHHHhhcC
Q psy8087 336 IN-RPIMLCRFPADIKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGIDPAPYYWYTDQRKYG 414 (658)
Q Consensus 336 ~~-~p~fi~~~P~~~~pfy~~~~~~~~~~~~~fdL~~~G~~Ei~~G~~r~~d~~~~~~~~~~~g~~~~~~~~yl~a~~~G 414 (658)
+. +|+||+|||.+++||||+++++||+++++||||++|+ ||+|||+|+|||++|++||+++|++++.|+|||+|++||
T Consensus 312 ~~~~p~fv~d~P~~~~pfy~~~~~~~p~~~~~fDl~~~G~-Ei~~G~~r~~d~~~q~~rf~~~g~~~~~~~~yl~al~yG 390 (429)
T 1wyd_A 312 LKEDLYFIVDWPSDARPFYTKSKSENPELSESFDLIYKFL-EIVSGSTRNHKREVLEEALKKKGLKPESFEFFLKWFDYG 390 (429)
T ss_dssp HCCSEEEEECCBGGGSCTTBCBCCC-CCBBSEEEEEETTE-EEEEEEEBCCCHHHHHHHHHHTTCCGGGGHHHHGGGGSC
T ss_pred hccCCEEEecCChhhChhhCCcCCCCCCeEEEEEEEECCE-EEEeCeeeeCCHHHHHHHHHHcCCChHHHHHHHHHHhcC
Confidence 76 5999999999999999999999999999999999998 999999999999999999999999999999999999999
Q ss_pred CCCccceecchhHHHHHHhcccCcchhhHHHHH
Q psy8087 415 STPHGGYGLGLERVLCWLLNQYHVRDKYQLIAK 447 (658)
Q Consensus 415 ~pP~gG~GiGidRL~m~l~g~~~Irdvi~f~~k 447 (658)
+|||||||||||||+|+|+|.+||||||+||..
T Consensus 391 ~PP~~G~glGiDRLvmll~g~~~Irdvi~FP~~ 423 (429)
T 1wyd_A 391 MPPHAGFGMGLARLMVMLTGIQSVKEIVPFPRD 423 (429)
T ss_dssp CCCEEEEEEEHHHHHHHHHCCCCGGGTSSSCCB
T ss_pred CCCceEEEEcHHHHHHHHcCCCcHHhEEecCCC
Confidence 999999999999999999999999999999743
|
| >3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-90 Score=770.30 Aligned_cols=378 Identities=27% Similarity=0.438 Sum_probs=305.8
Q ss_pred ccccccccCCCccCCcEEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccc--hh-h-hhhcCCCccEEEEEEEeE
Q psy8087 56 EVGYITCEGPAGYIITNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILC--QT-E-HALLLSTESSVQFRGRIE 131 (658)
Q Consensus 56 ~~~~~~~~~~~~~~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~--~~-~-~~~~l~~es~V~v~G~l~ 131 (658)
.++++.. ...|++|+|+|||+++|.+| +++|++|||++|.||||++.+.. .. + ....|+.||+|.|+|+|.
T Consensus 52 ~i~~l~~----~~~g~~V~v~Gwv~~~R~~g-kl~Fi~LrD~~g~iQ~v~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~ 126 (548)
T 3i7f_A 52 EIEELVP----AMAEKTVTIRARVQAVRGKG-NMVFLFLRKGIYTCQALVMKSETISKEFVQFCQKISAESICDITGIVK 126 (548)
T ss_dssp CGGGCSG----GGTTCEEEEEEEEEEEEECS-SEEEEEEEETTEEEEEEEECSSSSCHHHHHHHHTCCTTEEEEEEEEEE
T ss_pred Ehhhcch----hcCCCEEEEEEEEEEEecCC-CeEEEEEEECCeeEEEEEECCCccCHHHHHHHhCCCCCCEEEEEEEEE
Confidence 4556643 36789999999999999998 59999999999999999986321 11 2 235799999999999999
Q ss_pred eCCC-------CccceEecC-----------C------------------------------------------------
Q psy8087 132 KVPE-------ENMKVQLIH-----------P------------------------------------------------ 145 (658)
Q Consensus 132 ~~p~-------~~~d~~l~~-----------p------------------------------------------------ 145 (658)
+++. +.+|+.++. |
T Consensus 127 ~~~~~~~~~~~~~~El~~~~i~vls~a~~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 206 (548)
T 3i7f_A 127 AVEKPIEKATQQDVEIHVTSIAVVSLAEYPLPMQIEDLTFPSSVFKKQEEDIAKVDEKIAKFLKDNEGKDLTKRPLKDEY 206 (548)
T ss_dssp ECSSCCTTSSSCSEEEEEEEEEEEECCCBSCSSCSGGGSCCHHHHHHHHHHTTCC-------------------------
T ss_pred eCCcccccCCCCcEEEEEeEEEEEecCCCCCCCCchhccccccccccccccccccccccccccccccccccccccccccc
Confidence 8764 222211100 0
Q ss_pred ----------------------CceeEEeecCCccc---------CchHHHhhhCCcEEEcCCccccccCCCCccceeec
Q psy8087 146 ----------------------SSYAIVWLGDLKQG---------GYPPEVSLANGIAKVTPPTLVQTQVEGGSTLFSLN 194 (658)
Q Consensus 146 ----------------------~~R~l~lr~~~~~~---------~~iR~fl~~~gF~EV~TPiL~~~~~eG~~~~F~~~ 194 (658)
++||||||++..++ ++||+||.++||+||+||+|+++++|||+++|.++
T Consensus 207 ~~~l~~~~~~~~~~~~~~e~rl~~R~LdLR~~~~~~~~r~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~~egga~~F~v~ 286 (548)
T 3i7f_A 207 AKLLKEKASAQKYVKVSQDTRLDNRMLDLRTVTNIAIFRIQSACCGLFREFLTSQKFVEIHTPKLIGCSSEGGSNIFEVK 286 (548)
T ss_dssp ------CCCCCCCCCCCHHHHHTTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSBC--------------
T ss_pred cccccccccccccccCCHHHhhhchhhccCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeCCEEecccCCCCcceeEEe
Confidence 14899999876544 58999999999999999999999999999999999
Q ss_pred cCCcceeeccCHHHHHHHhcc-cCCcEEEEeeeeecCCCCCccCcceeeeeeeEeecC-CHHHHHHHHHHHHHHHHHHHh
Q psy8087 195 FFGEPAYLTQSSQLYLETCLP-ALGDVYCIAQSYRAENSRTRRHLAEYTHVEAECAFL-TFDDLLDKLEDLICDTVDRVM 272 (658)
Q Consensus 195 ~~~~~~~L~~Spqlylk~li~-g~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~a~~-d~~~~m~~~e~li~~i~~~~~ 272 (658)
||+.++||+||||||||+|++ |++||||||||||||+++++|||||||||||||+|. ||+|+|+++|+||++++..+.
T Consensus 287 ~~~~~~yL~~Spql~~k~ll~~g~~rVfeI~~~FR~E~~~t~RHl~EFtmlE~e~af~~d~~d~m~~~E~li~~i~~~~~ 366 (548)
T 3i7f_A 287 YFDRKAYLAQSPQLYKQMAIMGDFRKVFEVGPVFRAENSNTRRHLTEFEGLDIEMEIVENYHECIDVMEKLFTFIFDEIP 366 (548)
T ss_dssp -----CCBCSCTHHHHHHHHTTTCCEEEEEEEECCCSCCCSSSCCSCEEEEEEEEECSSCTHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCceEeccCHHHHHHHHHhcCcCcEEEEeeeEecCCCCCCCcchhhhchhhhhhhhcCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999987 799999999999999999999999999999999998 799999999999999999997
Q ss_pred hcccccccc----cC-CCCCCCCCCcceeeHHHHHHHHHHcCCCCCCCCCcccCCCCCCchhhhhhc----ccCCc-EEE
Q psy8087 273 ATHGDLVRQ----MN-PNFEPPARPFLRMNYADAIEYLRKHEIRKPDNTEYEFGEDIPEMPERKMTD----QINRP-IML 342 (658)
Q Consensus 273 ~~~~~~~~~----~~-~~~~~~~~pf~rit~~ea~~~l~~~g~~~~~~~~~~~g~~l~~~~e~~l~~----~~~~p-~fi 342 (658)
+.+...+.. +. ..+. . .||+||||.||++++++.|++. .|+.+++..+|+++++ .++.| +||
T Consensus 367 ~~~~~el~~~~~~~~~~~~~-~-~pf~rit~~eai~~l~~~g~~~------~~~~dl~~~~e~~l~~~i~~~~~~~~~~i 438 (548)
T 3i7f_A 367 KRFPDELKVIRKQYPFEDLI-Y-RPFLRLTYKEAIEMLRASGETI------GDYDDFTTPQEVKLGELIKAKYNTDFYIL 438 (548)
T ss_dssp HHCHHHHHHHHHHSCCCCCC-C-CSCEEEEHHHHHHHHHHTTCCC------CTTCCCCHHHHHHHHHHHHHHHCCSEEEE
T ss_pred HhhhHHHHHhhhcCCccccc-c-CCcceeEHHHHHHHHHHcCCCC------CCccccchHHHHHHHHHHHHHcCCCeEEE
Confidence 655332211 11 1121 1 6999999999999999988753 4678899888887765 34555 567
Q ss_pred EeCCCCCCCCCCccCCCCcCceeEEEEEeCCcceeeeceeccCCHHHHHHHHHHcCCCCCCCcchHHHhhcCCCCcccee
Q psy8087 343 CRFPADIKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGIDPAPYYWYTDQRKYGSTPHGGYG 422 (658)
Q Consensus 343 ~~~P~~~~pfy~~~~~~~~~~~~~fdL~~~G~~Ei~~G~~r~~d~~~~~~~~~~~g~~~~~~~~yl~a~~~G~pP~gG~G 422 (658)
+|||.+++||||+.+++||++++|||||++| +||+|||+|+|||++|++||+++|++++.|+|||+|++||||||||||
T Consensus 439 ~~yP~~~~pfYak~~~~dp~~~~rFDL~i~G-~Ei~nG~~rl~Dp~~~~~R~~~~G~d~~~~e~yl~al~yG~PPhgG~G 517 (548)
T 3i7f_A 439 DKFPAAIRPFYTMPDIDDPNYSNSYDVFVRG-QEITSGAQRIHDPEFLMKRCIEKGVDPATLKDYIESFRFGSWPHAGCG 517 (548)
T ss_dssp ECCBGGGSCTTBCBCSSCTTBBSEEEEEETT-EEEEEEEEECCCHHHHHHHHHHTTCCGGGGHHHHHTTSSCCCCEEEEE
T ss_pred ecCccccCchhhccCCCCCCeEEEEEEEECC-EEEeeCeeecCCHHHHHHHHHHcCCChHHHHHHHHHHhCCCCCceEEE
Confidence 8999999999999999999999999999999 599999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHhcccCcchhhHHHHH
Q psy8087 423 LGLERVLCWLLNQYHVRDKYQLIAK 447 (658)
Q Consensus 423 iGidRL~m~l~g~~~Irdvi~f~~k 447 (658)
||||||+|++||.+||||||+||..
T Consensus 518 lGiDRLvMlltg~~nIRdVi~FPR~ 542 (548)
T 3i7f_A 518 IGLERITMLYLGIPNIRKVTLFPRD 542 (548)
T ss_dssp EEHHHHHHHHTTCSCGGGGSSSCCB
T ss_pred EcHHHHHHHHhCCccHHHhhcCCCC
Confidence 9999999999999999999999854
|
| >3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-90 Score=765.88 Aligned_cols=391 Identities=19% Similarity=0.260 Sum_probs=321.1
Q ss_pred CCCCC-CCCccccccccccCCCc------cCCcEEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccch--hhh-h
Q psy8087 46 LPFPL-FPSPCEVGYITCEGPAG------YIITNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILCQ--TEH-A 115 (658)
Q Consensus 46 ~~~~~-~~~~~~~~~~~~~~~~~------~~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~~--~~~-~ 115 (658)
.|||. |.++++++++.+..... ..|++|+|+|||+++|.+|| ++|++|||++|.||||++++... .+. .
T Consensus 25 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~Gwv~~~R~~gk-~~F~~LrD~sg~iQvv~~~~~~~~~~~~~~ 103 (493)
T 3a74_A 25 DPFGKRFERTHKAEELFELYGDLSKEELEEQQIEVAVAGRIMTKRGMGK-AGFAHIQDVTGQIQIYVRQDDVGEQQYELF 103 (493)
T ss_dssp CTTCCCCCCSCCHHHHHHHHTTSCHHHHHHHCCEEEEEEEEEEEEEETT-EEEEEEEETTEEEEEEEEHHHHHHHHHHHH
T ss_pred CCCCCCCcCceehHHHHHhhccccchhhccCCCEEEEEEEEEEEecCCC-cEEEEEEECCEeEEEEEECCcCCHHHHHHH
Confidence 35665 66677788876542110 12788999999999999985 89999999999999999865321 232 2
Q ss_pred hcCCCccEEEEEEEeEeCCCCccceEecC-----------C-------------CceeEEeecCCcc-c---------Cc
Q psy8087 116 LLLSTESSVQFRGRIEKVPEENMKVQLIH-----------P-------------SSYAIVWLGDLKQ-G---------GY 161 (658)
Q Consensus 116 ~~l~~es~V~v~G~l~~~p~~~~d~~l~~-----------p-------------~~R~l~lr~~~~~-~---------~~ 161 (658)
..++.||+|.|+|.|.+++.+.+++.++. | ++||||||++... + ++
T Consensus 104 ~~l~~g~~v~V~G~v~~~~~ge~ei~~~~i~vl~~~~~plP~k~~~~~~~e~r~r~RyldL~~~~~~~~~~r~Rs~i~~~ 183 (493)
T 3a74_A 104 KISDLGDIVGVRGTMFKTKVGELSIKVSSYEFLTKALRPLPEKYHGLKDIEQRYRQRYLDLIMNPESKKTFITRSLIIQS 183 (493)
T ss_dssp HHCCTTCEEEEEEEEEECTTCCEEEEEEEEEEEECCSSCCCCC-----CHHHHHHTHHHHHHHCTHHHHHHHHHHHHHHH
T ss_pred hcCCCCCEEEEEEEEEeCCCCcEEEEEEEEEEcccccCCCCccccCCCCHhhhhhcchhhhhcCHHHHHHHHHHHHHHHH
Confidence 47999999999999999988764433221 1 2489999744332 2 69
Q ss_pred hHHHhhhCCcEEEcCCccccccCCCC-ccceee--ccCCcceeeccCHHHHHHHhcc-cCCcEEEEeeeeecCCCCCccC
Q psy8087 162 PPEVSLANGIAKVTPPTLVQTQVEGG-STLFSL--NFFGEPAYLTQSSQLYLETCLP-ALGDVYCIAQSYRAENSRTRRH 237 (658)
Q Consensus 162 iR~fl~~~gF~EV~TPiL~~~~~eG~-~~~F~~--~~~~~~~~L~~Spqlylk~li~-g~~rvfeI~~~FR~E~~~~~rH 237 (658)
||+||.++||+||+||+|++ +++|+ +++|.+ +++|.++||+||||||||+|++ |++||||||||||||++++ ||
T Consensus 184 iR~ff~~~gF~EVeTPiL~~-~~~Ga~a~~F~~~~~~~~~~~yLr~SpqLylk~l~v~G~~rVyeig~~FR~E~~~~-rH 261 (493)
T 3a74_A 184 MRRYLDSHGYLEVETPMMHA-VAGGAAARPFITHHNALDMTLYMRIAIELHLKRLIVGGLEKVYEIGRVFRNEGIST-RH 261 (493)
T ss_dssp HHHHHHHTTCEECCCCSEES-SCCSSSSCCCEEEETTTTEEEEECSCSHHHHHHHHHTTCCEEEEEEEEECCCCCBT-TB
T ss_pred HHHHHHhCCeEEEECCeEEe-cCCCCcccceEecccCCCceeEEecCHHHHHHHHhhcccCceEEECccccCCCCCc-cc
Confidence 99999999999999999974 45555 678844 8999999999999999999887 7999999999999999987 99
Q ss_pred cceeeeeeeEeecCCHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCCCcceeeHHHHHHHHHHcCCCC-CC--
Q psy8087 238 LAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGDLVRQMNPNFEPPARPFLRMNYADAIEYLRKHEIRK-PD-- 314 (658)
Q Consensus 238 l~EFt~lE~e~a~~d~~~~m~~~e~li~~i~~~~~~~~~~~~~~~~~~~~~~~~pf~rit~~ea~~~l~~~g~~~-~~-- 314 (658)
||||||||+||+|+|++|+|+++|+||+++++.+.+++...+....++ ++.||+||||.||++.+. |++. .+
T Consensus 262 ~pEFT~lE~e~af~d~~dlm~l~E~ll~~l~~~v~~~~~i~~~~~~i~---~~~pf~rity~eai~~~~--~~d~~~~~~ 336 (493)
T 3a74_A 262 NPEFTMLELYEAYADFRDIMKLTENLIAHIATEVLGTTKIQYGEHLVD---LTPEWRRLHMVDAIKEYV--GVDFWRQMS 336 (493)
T ss_dssp CSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHHSCSEEEETTEEEE---CCSSCEEEEHHHHHHHHT--CCCTTSCCC
T ss_pred CCceeEEEEEecCCCHHHHHHHHHHHHHHHHHHHhCCceEeeCCEeec---cCCCcceeeHHHHHHHHh--CCCCccccC
Confidence 999999999999999999999999999999999988764222111123 347999999999999863 3332 10
Q ss_pred ---------------CCCcccCCCCCCchhhhhhcccCCcEEEEeCCCCCCCCCCccCCCCcCceeEEEEEeCCcceeee
Q psy8087 315 ---------------NTEYEFGEDIPEMPERKMTDQINRPIMLCRFPADIKSFYMSKCPENPALTESVDVLFPNVGEVIG 379 (658)
Q Consensus 315 ---------------~~~~~~g~~l~~~~e~~l~~~~~~p~fi~~~P~~~~pfy~~~~~~~~~~~~~fdL~~~G~~Ei~~ 379 (658)
...+.+|+++...++.++++.+.+|+||+|||.+++|| ++++++||+++++||||++|+ ||+|
T Consensus 337 ~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~ve~~~~~p~fv~dyP~~~~pf-~~~~~~dp~~~~~fDL~i~G~-Ei~~ 414 (493)
T 3a74_A 337 DEEARELAKEHGVEVAPHMTFGHIVNEFFEQKVEDKLIQPTFIYGHPVEISPL-AKKNPDDPRFTDRFELFIVGR-EHAN 414 (493)
T ss_dssp HHHHHHHHHHTTCCCCTTCCHHHHHHHHHHHHTGGGCCSCEEEECCBGGGCTT-BCBCSSCTTBBSEEEEEETTE-EEEE
T ss_pred HHHHHHHHHHcCCCCCCCcChhHHHHHHHHHHhhcccCCcEEEECCCcccCCc-cCcCCCCCCeEEEEEEEeCCe-EEec
Confidence 01134566777888999999999999999999999999 788889999999999999998 9999
Q ss_pred ceeccCCHHHHHHHHHHc-----CCCCCC---CcchHHHhhcCCCCccceecchhHHHHHHhcccCcchhhHHHH
Q psy8087 380 GSMRIWDPEELLAGYKRE-----GIDPAP---YYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRDKYQLIA 446 (658)
Q Consensus 380 G~~r~~d~~~~~~~~~~~-----g~~~~~---~~~yl~a~~~G~pP~gG~GiGidRL~m~l~g~~~Irdvi~f~~ 446 (658)
||+|+|||++|++||+++ ..+++. ++|||+|++||||||||||||||||+|+|||.+||||||+||.
T Consensus 415 G~~el~d~~~q~~rf~~~~~~~~~~~~e~~~~d~~yl~al~yG~PPhgG~glGiDRLvmlltg~~~IRdVi~FPr 489 (493)
T 3a74_A 415 AFTELNDPIDQRQRFEEQLKEREQGNDEAHEMDEDFLEALEYGMPPTGGLGIGVDRLVMLLTNSPSIRDVLLFPQ 489 (493)
T ss_dssp EEEBCCCHHHHHHHHHHHHHHHHTTCTTSCCCCHHHHHHHHTCCCSEEEEEEEHHHHHHHHHTCSSGGGTSSSCC
T ss_pred CcceeCCHHHHHHHHHHHHHHhhcCCchhhhccHHHHHHHhCCCCCceeEEEcHHHHHHHHhCCCcHHhEeccCC
Confidence 999999999999999874 124443 4899999999999999999999999999999999999999963
|
| >1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-89 Score=749.66 Aligned_cols=383 Identities=34% Similarity=0.567 Sum_probs=334.6
Q ss_pred ccccccccccCCCccCCcEEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccc--hhhh-hhcCCCccEEEEEEEe
Q psy8087 54 PCEVGYITCEGPAGYIITNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILC--QTEH-ALLLSTESSVQFRGRI 130 (658)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~--~~~~-~~~l~~es~V~v~G~l 130 (658)
++.++++... ..|++|+|+|||+++|.+|| ++|++|||++|.||||++++.. +.+. ...|+.||+|.|+|.|
T Consensus 4 ~~~~~~l~~~----~~~~~V~v~G~v~~~R~~g~-~~F~~lrD~~g~iQ~v~~~~~~~~~~~~~~~~l~~~~~v~v~G~v 78 (434)
T 1x54_A 4 KVYCQEVKPE----LDGKKVRLAGWVYTNMRVGK-KIFLWIRDSTGIVQAVVAKNVVGEETFEKAKKLGRESSVIVEGIV 78 (434)
T ss_dssp CCCGGGCCGG----GTTCEEEEEEEEEEEEEETT-EEEEEEEETTEEEEEEECHHHHCHHHHHHHHTCCTTCEEEEEEEE
T ss_pred EEEHHHhhHH----hCCCEEEEEEEEEEEecCCC-eEEEEEEECCEEEEEEEECCcCCHHHHHHHhcCCCCCEEEEEEEE
Confidence 4456677442 57899999999999999986 9999999999999999976432 2232 3579999999999999
Q ss_pred EeCCCC--ccceEec----------CC--------------CceeEEeecCCccc---------CchHHHhhhCCcEEEc
Q psy8087 131 EKVPEE--NMKVQLI----------HP--------------SSYAIVWLGDLKQG---------GYPPEVSLANGIAKVT 175 (658)
Q Consensus 131 ~~~p~~--~~d~~l~----------~p--------------~~R~l~lr~~~~~~---------~~iR~fl~~~gF~EV~ 175 (658)
.++|.+ .+++.++ .| ++||||||++..++ ++||+||.++||+||+
T Consensus 79 ~~~~~~~~~~el~~~~~~vl~~~~~~P~~~~~~~~~~e~r~~~R~Ldlr~~~~~~~~~~rs~i~~~ir~~f~~~gF~eVe 158 (434)
T 1x54_A 79 KADERAPGGAEVHVEKLEVIQAVSEFPIPENPEQASPELLLDYRHLHIRTPKASAIMKVKETLIMAAREWLLKDGWHEVF 158 (434)
T ss_dssp EECTTSGGGEEEEEEEEEEEECCSCCSSCSSGGGSCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECC
T ss_pred EecCCCCccEEEEEeEEEEeecCCCCCCcccccCCCHHHhhhceeeeecCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEe
Confidence 999875 3332221 02 14899999665443 5999999999999999
Q ss_pred CCccccccCCCCccceeeccCCcceeeccCHHHHHHHhcccCCcEEEEeeeeecCCCCCccCcceeeeeeeEeecCCHHH
Q psy8087 176 PPTLVQTQVEGGSTLFSLNFFGEPAYLTQSSQLYLETCLPALGDVYCIAQSYRAENSRTRRHLAEYTHVEAECAFLTFDD 255 (658)
Q Consensus 176 TPiL~~~~~eG~~~~F~~~~~~~~~~L~~Spqlylk~li~g~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~a~~d~~~ 255 (658)
||+|+.+.+||++++|.++|+|.++||+||||+|+|+++.|++|||+||||||||+++++||+|||||||+||+|.|++|
T Consensus 159 TP~l~~~~~e~~~~~f~~~~~~~~~~Lr~Spel~~~~~~~g~~rvf~ig~~FR~E~~~~~RH~pEFtqle~e~~~~~~~d 238 (434)
T 1x54_A 159 PPILVTGAVEGGATLFKLKYFDKYAYLSQSAQLYLEAAIFGLEKVWSLTPSFRAEKSRTRRHLTEFWHLELEAAWMDLWD 238 (434)
T ss_dssp CCSEESCCSSCGGGCCEEEETTEEEEECSCSHHHHHHHHHHHSEEEEEEEEECCCCCCCSSCCSEEEEEEEEEETCCHHH
T ss_pred CcEEEeecCCCCceeEEEeecCCcEEeccChHHHHHHHhcCccceEEEecceecCCCCCcccccEEEEeeEEEcCCCHHH
Confidence 99999888999999999999999999999999999995558999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcccccccccCCCC---CCCCCCcceeeHHHHHHHHHHcCCCCCCCCCcccCCCCCCchhhhh
Q psy8087 256 LLDKLEDLICDTVDRVMATHGDLVRQMNPNF---EPPARPFLRMNYADAIEYLRKHEIRKPDNTEYEFGEDIPEMPERKM 332 (658)
Q Consensus 256 ~m~~~e~li~~i~~~~~~~~~~~~~~~~~~~---~~~~~pf~rit~~ea~~~l~~~g~~~~~~~~~~~g~~l~~~~e~~l 332 (658)
+|+++|+|++++++.+.+++...+..++.++ ..++.||+|+||.||++++++.|++ ..||++++..+|++|
T Consensus 239 lm~~~e~ll~~l~~~v~~~~~~~i~~~~~~~~~~~~~~~pf~rity~ea~~~~~~~g~~------~~~~~dl~~~~e~~l 312 (434)
T 1x54_A 239 IMKVEEELVSYMVQRTLELRKKEIEMFRDDLTTLKNTEPPFPRISYDEAIDILQSKGVN------VEWGDDLGADEERVL 312 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHTTCSCCHHHHTCCSSCCEEEHHHHHHHHHHTTCC------CCTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhchhhhhhcCcccccccccCCCCcEEEHHHHHHHHHhcCCC------cccCCccChHHHHHH
Confidence 9999999999999999876644444433321 1124699999999999999888754 457889999999999
Q ss_pred hcccCCcEEEEeCCCCCCCCCCccCCCCcCceeEEEEEeC-CcceeeeceeccCCHHHHHHHHHHcCCCCCCCcchHHHh
Q psy8087 333 TDQINRPIMLCRFPADIKSFYMSKCPENPALTESVDVLFP-NVGEVIGGSMRIWDPEELLAGYKREGIDPAPYYWYTDQR 411 (658)
Q Consensus 333 ~~~~~~p~fi~~~P~~~~pfy~~~~~~~~~~~~~fdL~~~-G~~Ei~~G~~r~~d~~~~~~~~~~~g~~~~~~~~yl~a~ 411 (658)
++.+.+|+||+|||.+++||||+++++||+++++||||++ |+|||+|||+|+|||++|++||+++|++++.|+|||+|+
T Consensus 313 ~~~~~~p~fv~d~P~~~~pfy~~~~~~~p~~~~~fDl~~~~G~gEi~~G~~r~~d~~~q~~rf~~~g~~~~~~~~yl~al 392 (434)
T 1x54_A 313 TEEFDRPFFVYGYPKHIKAFYMKEDPNDPRKVLASDMLAPEGYGEIIGGSQREDDYDKLLNRILEEGMDPKDYEWYLDLR 392 (434)
T ss_dssp HTTCSSCEEEEEEEGGGSCTTBCBCSSCTTEEEEEEEEETTTTEEEEEEEEBCCCHHHHHHHHHHTTCCGGGGHHHHHTT
T ss_pred HHHhCCcEEEEcCChhhCcccCCcCCCCCCeEEEEEEEECCCceEEecCeEeeCCHHHHHHHHHHcCCChHHHHHHHHHH
Confidence 9988999999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred hcCCCCccceecchhHHHHHHhcccCcchhhHHHHH
Q psy8087 412 KYGSTPHGGYGLGLERVLCWLLNQYHVRDKYQLIAK 447 (658)
Q Consensus 412 ~~G~pP~gG~GiGidRL~m~l~g~~~Irdvi~f~~k 447 (658)
+||+|||||||||||||+|+|+|.+||||||+||..
T Consensus 393 ~yG~PP~~G~glGiDRLvmll~g~~~Irdvi~FP~~ 428 (434)
T 1x54_A 393 RYGSVPHSGFGLGVERLVAWVLKLDHIRWAALFPRT 428 (434)
T ss_dssp TSSCCCEEEEEEEHHHHHHHHTTCSSGGGGSSSCCB
T ss_pred hcCCCCceEEEEcHHHHHHHHcCCCcHHhEEEccCc
Confidence 999999999999999999999999999999999743
|
| >1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-89 Score=745.46 Aligned_cols=361 Identities=29% Similarity=0.475 Sum_probs=278.6
Q ss_pred cCCcEEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccchhhhhhcCC-CccEEEEEEEeEeCCCC--ccceEecC
Q psy8087 68 YIITNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLS-TESSVQFRGRIEKVPEE--NMKVQLIH 144 (658)
Q Consensus 68 ~~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~~~~~~~~l~-~es~V~v~G~l~~~p~~--~~d~~l~~ 144 (658)
..|++|+|+|||+++|.+|| ++|++|||++|.||||+++ ..|+ .||+|.|+|.|.++|.+ .+++.++.
T Consensus 11 ~~~~~V~v~Gwv~~~R~~g~-~~F~~lrD~~g~iQ~v~~~--------~~l~~~~~~v~v~G~v~~~~~~~~~~el~~~~ 81 (422)
T 1n9w_A 11 HVGQEVELLGFLHWRRDLGR-IQFLLLRDRSGVVQVVTGG--------LKLPLPESALRVRGLVVENAKAPGGLEVQAKE 81 (422)
T ss_dssp CTTSEEEEEEEEEEEEECSS-EEEEEEEETTEEEEEEEES--------CCCCCTTCEEEEEEEEEECTTSTTSEEEEEEE
T ss_pred cCCCEEEEEEEEEEEecCCC-eEEEEEEECCEEEEEEEEc--------cccCCCCCEEEEEEEEEecCCCCccEEEEEeE
Confidence 56899999999999999985 9999999999999999976 2589 99999999999998865 22221110
Q ss_pred -----------C----------------CceeEEeecCCccc---------CchHHHhhhCCcEEEcCCccccccCCCCc
Q psy8087 145 -----------P----------------SSYAIVWLGDLKQG---------GYPPEVSLANGIAKVTPPTLVQTQVEGGS 188 (658)
Q Consensus 145 -----------p----------------~~R~l~lr~~~~~~---------~~iR~fl~~~gF~EV~TPiL~~~~~eG~~ 188 (658)
| ++||||||++..++ +++|+||.++||+||+||+|+.+.+||++
T Consensus 82 ~~vl~~~~~~~P~~~~~~~~~~~~e~r~~~R~Ldlr~~~~~~~~~~rs~i~~~ir~~f~~~gF~EV~TPil~~~~~e~~~ 161 (422)
T 1n9w_A 82 VEVLSPALEPTPVEIPKEEWRANPDTLLEYRYVTLRGEKARAPLKVQAALVRGFRRYLDRQDFTEIFTPKVVRAGAEGGS 161 (422)
T ss_dssp EEEEECCCSCCC-----------------CHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCC-----------
T ss_pred EEEeccCCcCCCCCccccccCCCHHHHhhhhHHhhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEeCCCCCc
Confidence 1 24899999765443 59999999999999999999988898999
Q ss_pred cceeeccCCcceeeccCHHHHHHHhcccCCcEEEEeeeeecCCCCCccCcceeeeeeeEeecC-CHHHHHHHHHHHHHHH
Q psy8087 189 TLFSLNFFGEPAYLTQSSQLYLETCLPALGDVYCIAQSYRAENSRTRRHLAEYTHVEAECAFL-TFDDLLDKLEDLICDT 267 (658)
Q Consensus 189 ~~F~~~~~~~~~~L~~Spqlylk~li~g~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~a~~-d~~~~m~~~e~li~~i 267 (658)
++|.++|+|.++||+||||+|+|+++.|++|||+||||||||+++++||+|||||||+|++|+ |++|+|+++|+|++++
T Consensus 162 ~~f~~~~~g~~~~L~~Spel~~~~l~~g~~rvf~ig~~FR~E~~~~~RH~pEFtqle~e~~~~~d~~dlm~l~e~ll~~l 241 (422)
T 1n9w_A 162 GLFGVDYFEKRAYLAQSPQLYKQIMVGVFERVYEVAPVWRMEEHHTSRHLNEYLSLDVEMGFIADEEDLMRLEEALLAEM 241 (422)
T ss_dssp -----------------CHHHHHHHHHHHSEEEEEEEC-------------CCEEEEEEEESCSSHHHHHHHHHHHHHHH
T ss_pred eeEEEeeCCCcEEeeeCHHHHHHHHhhCCCceeEEeCceECCCCCCCcccceeEEeeeeeeCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999887899999999999999999999999999999999999 9999999999999999
Q ss_pred HHHHhhcccccccccCCCCCCCCCCcceeeHHHHHHHHHHcCCCCCCCCCcccCCCCCCchhhhhhcccC-----CcEEE
Q psy8087 268 VDRVMATHGDLVRQMNPNFEPPARPFLRMNYADAIEYLRKHEIRKPDNTEYEFGEDIPEMPERKMTDQIN-----RPIML 342 (658)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~pf~rit~~ea~~~l~~~g~~~~~~~~~~~g~~l~~~~e~~l~~~~~-----~p~fi 342 (658)
++.+.+++...+..++.++.....||+||||.||++++++.| + ..||.++...+|+++.+.+. +|+||
T Consensus 242 ~~~~~~~~~~~i~~~~~~~~~~~~pf~rity~eA~~~~~~~~-~------~~~~~dl~~~~e~~l~~~~~~~~~~~p~fv 314 (422)
T 1n9w_A 242 LEEALNTAGDEIRLLGATWPSFPQDIPRLTHAEAKRILKEEL-G------YPVGQDLSEEAERLLGEYAKERWGSDWLFV 314 (422)
T ss_dssp HHHHHHHSHHHHHHTTCCCCCCSSSCCEEEHHHHHHHHHHTS-C------CCCCSSCCHHHHHHHHHHHHHHTCCSEEEE
T ss_pred HHHHhccchhhhhhcCccccccCCCcceeEHHHHHHHHHhcC-C------cccccccCcHHHHHHHHHHHhhhCCceEEE
Confidence 999987665444444444332236999999999999998776 1 46788899888988877653 79999
Q ss_pred EeCCCCCCCCCCccCCCCcCceeEEEEEeCCcceeeeceeccCCHHHHHHHHHHcCCCCCCCcchHHHhhcCCCCcccee
Q psy8087 343 CRFPADIKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGIDPAPYYWYTDQRKYGSTPHGGYG 422 (658)
Q Consensus 343 ~~~P~~~~pfy~~~~~~~~~~~~~fdL~~~G~~Ei~~G~~r~~d~~~~~~~~~~~g~~~~~~~~yl~a~~~G~pP~gG~G 422 (658)
+|||.+++||||+.+++ +++++||||++|+ ||+|||+|+|||++|++||+++|++++.|+|||+|++||+|||||||
T Consensus 315 ~d~P~~~~pf~~~~~~d--~~~~~fDL~~~G~-Ei~~G~~r~~d~~~q~~rf~~~g~~~~~~~~yl~a~~yG~PPhgG~g 391 (422)
T 1n9w_A 315 TRYPRSVRPFYTYPEED--GTTRSFDLLFRGL-EITSGGQRIHRYEELLESLKAKGMDPEAFHGYLEVFKYGMPPHGGFA 391 (422)
T ss_dssp ECCBGGGSCTTBCBCTT--SBBSEEEEEETTE-EEEEEEEBCCCHHHHHHHHHHTTCCGGGGHHHHGGGGBCCCSEEEEE
T ss_pred ECCChhhCcCcCCCCCC--CEEEEEEEEECCE-EEEeCEeecCCHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCceEEE
Confidence 99999999999887654 8999999999998 99999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHhcccCcchhhHHHHH
Q psy8087 423 LGLERVLCWLLNQYHVRDKYQLIAK 447 (658)
Q Consensus 423 iGidRL~m~l~g~~~Irdvi~f~~k 447 (658)
||||||+|+|||.+||||||+||..
T Consensus 392 lGiDRLvm~l~g~~~Irdvi~FPr~ 416 (422)
T 1n9w_A 392 IGAERLTQKLLGLPNVRYARAFPRD 416 (422)
T ss_dssp EEHHHHHHHHTTCSSGGGGCSCC--
T ss_pred EcHHHHHHHHhCCCcHHhEEecCCC
Confidence 9999999999999999999999854
|
| >1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-87 Score=745.41 Aligned_cols=374 Identities=28% Similarity=0.418 Sum_probs=318.7
Q ss_pred cCCcEEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecc--c--ch-hh-hhhcCCCccEEEEEEEeEeCCC------
Q psy8087 68 YIITNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADI--L--CQ-TE-HALLLSTESSVQFRGRIEKVPE------ 135 (658)
Q Consensus 68 ~~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~--~--~~-~~-~~~~l~~es~V~v~G~l~~~p~------ 135 (658)
..|++|+|+|||+++|.+||.|+|++|||++|.||||++++ . .. .+ ....|+.||+|.|+|.|.++|.
T Consensus 34 ~~g~~V~v~GwV~~~R~~g~~l~Fi~LrD~~g~iQvv~~~~~~~~~~~~~~~~~~~l~~e~~V~V~G~v~~~~~~~~~~~ 113 (487)
T 1eov_A 34 DSDKEVLFRARVHNTRQQGATLAFLTLRQQASLIQGLVKANKEGTISKNMVKWAGSLNLESIVLVRGIVKKVDEPIKSAT 113 (487)
T ss_dssp TTTCEEEEEEEEEEEEECSSSEEEEEEEETTEEEEEEEECCSSSSSCHHHHHHHTTCCTTCEEEEEEEEEECSSCCTTSS
T ss_pred cCCCEEEEEEEEEEeeccCCccEEEEEEECCccEEEEEeccccccccHHHHHHHhcCCCCCEEEEEEEEEeCCCCCcCCC
Confidence 56889999999999999997669999999999999999865 1 22 22 2357999999999999999884
Q ss_pred -CccceEecC-----------C---------------------------CceeEEeecCCccc---------CchHHHhh
Q psy8087 136 -ENMKVQLIH-----------P---------------------------SSYAIVWLGDLKQG---------GYPPEVSL 167 (658)
Q Consensus 136 -~~~d~~l~~-----------p---------------------------~~R~l~lr~~~~~~---------~~iR~fl~ 167 (658)
+.+|+.++. | ++||||||++..++ ++||+||.
T Consensus 114 ~g~~El~~~~i~vl~~a~~~lP~~~~~~~~~~~~~~~~~~~~~~~e~r~~~R~LdLr~~~~~~~~~~rs~i~~~ir~~~~ 193 (487)
T 1eov_A 114 VQNLEIHITKIYTISETPEALPILLEDASRSEAEAEAAGLPVVNLDTRLDYRVIDLRTVTNQAIFRIQAGVCELFREYLA 193 (487)
T ss_dssp EEEEEEEEEEEEEEECCCSSCSSCHHHHTSCHHHHHHTTCCCCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEEEEEEeecccccCCcchhhcccccccccccccccCChhhhhhcceeecCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222110 1 13899999765443 58999999
Q ss_pred hCCcEEEcCCccccccCCCCccceeeccCCcceeeccCHHHHHHHhcc-cCCcEEEEeeeeecCCCCCccCcceeeeeee
Q psy8087 168 ANGIAKVTPPTLVQTQVEGGSTLFSLNFFGEPAYLTQSSQLYLETCLP-ALGDVYCIAQSYRAENSRTRRHLAEYTHVEA 246 (658)
Q Consensus 168 ~~gF~EV~TPiL~~~~~eG~~~~F~~~~~~~~~~L~~Spqlylk~li~-g~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~ 246 (658)
++||+||+||+|+++.+|||+++|.++++|.++||+||||||+|++|+ |++||||||||||||+++++||+|||||||+
T Consensus 194 ~~gF~EV~TPil~~~~~~~ga~~f~~~~~~~~~~L~~Spql~~k~l~~~g~~rvy~ig~~FR~E~~~~~Rh~pEFt~le~ 273 (487)
T 1eov_A 194 TKKFTEVHTPKLLGAPSEGGSSVFEVTYFKGKAYLAQSPQFNKQQLIVADFERVYEIGPVFRAENSNTHRHMTEFTGLDM 273 (487)
T ss_dssp HTTCEECCCCSEESSCSSSSSCCCEEEETTEEEEECSCTHHHHHHHHHTTCCEEEEEEEEECCCCCCCTTCCSEEEEEEE
T ss_pred hCCcEEEeCCEEEEecCCCCcccceeccCCccEEcccChHHHHHHHHhcCCCceEEEeccEecCCCCCCccchhhhhhhh
Confidence 999999999999988899999999999999999999999999999987 7999999999999999999999999999999
Q ss_pred EeecC-CHHHHHHHHHHHHHHHHHHHhhccccccccc----C-CCCCCC-CCCcceeeHHHHHHHHHHcCCCCCCCCCcc
Q psy8087 247 ECAFL-TFDDLLDKLEDLICDTVDRVMATHGDLVRQM----N-PNFEPP-ARPFLRMNYADAIEYLRKHEIRKPDNTEYE 319 (658)
Q Consensus 247 e~a~~-d~~~~m~~~e~li~~i~~~~~~~~~~~~~~~----~-~~~~~~-~~pf~rit~~ea~~~l~~~g~~~~~~~~~~ 319 (658)
||+|. |++|+|+++|+||+++++.+.+++...+..+ . ..+... ..||++++|.||++++++.|++. .
T Consensus 274 e~af~~~~~dlm~l~E~ll~~l~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ri~~~ea~~~l~~~g~~~------~ 347 (487)
T 1eov_A 274 EMAFEEHYHEVLDTLSELFVFIFSELPKRFAHEIELVRKQYPVEEFKLPKDGKMVRLTYKEGIEMLRAAGKEI------G 347 (487)
T ss_dssp EEECSSCTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHSCCCCCCCCTTCCCEEEEHHHHHHHHHHTTCCC------C
T ss_pred hhhhhcCHHHHHHHHHHHHHHHHHHHHhhchhHHHhhhhhcCCcceecccCCCeeEEEHHHHHHHHHHhCCCC------C
Confidence 99998 6999999999999999999976654322111 1 112111 23899999999999998888653 3
Q ss_pred cCCCCCCchhhhhhcc----cC-CcEEEEeCCCCCCCCCCccCCCCcCceeEEEEEeCCcceeeeceeccCCHHHHHHHH
Q psy8087 320 FGEDIPEMPERKMTDQ----IN-RPIMLCRFPADIKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGY 394 (658)
Q Consensus 320 ~g~~l~~~~e~~l~~~----~~-~p~fi~~~P~~~~pfy~~~~~~~~~~~~~fdL~~~G~~Ei~~G~~r~~d~~~~~~~~ 394 (658)
++.++....++.++.. +. .|+||+|||.+++|||++++++||+++++||||++|+ ||+|||+|+|||++|++||
T Consensus 348 ~~~d~~~~~e~~l~~~~~~~~~~~~~~v~dyP~~~~pfy~~~~~~dp~~~~~fDL~~~G~-Ei~~G~~rl~d~~~q~~r~ 426 (487)
T 1eov_A 348 DFEDLSTENEKFLGKLVRDKYDTDFYILDKFPLEIRPFYTMPDPANPKYSNSYDFFMRGE-EILSGAQRIHDHALLQERM 426 (487)
T ss_dssp TTCCCCHHHHHHHHHHHHHHSCCSEEEEECCBGGGSCTTBCBCSSCTTBBSEEEEEETTE-EEEEEEEBCCCHHHHHHHH
T ss_pred cccchhhHHHHHHHHHHHHHhCCCCEEEECCccccChhhcCcCCCCCCeEEEEEEEeCCE-EEEeeEEecCCHHHHHHHH
Confidence 4567777788777643 33 3689999999999999999999999999999999995 9999999999999999999
Q ss_pred HHcCCCCC--CCcchHHHhhcCCCCccceecchhHHHHHHhcccCcchhhHHHHHh
Q psy8087 395 KREGIDPA--PYYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRDKYQLIAKA 448 (658)
Q Consensus 395 ~~~g~~~~--~~~~yl~a~~~G~pP~gG~GiGidRL~m~l~g~~~Irdvi~f~~k~ 448 (658)
++.|++++ .++|||+|++||+|||||||||||||+|+|||.+||||||+||..+
T Consensus 427 ~~~g~~~~~~~~~~yl~al~yG~PPhgG~glGiDRLvmll~g~~~IRdVi~FPr~~ 482 (487)
T 1eov_A 427 KAHGLSPEDPGLKDYCDGFSYGCPPHAGGGIGLERVVMFYLDLKNIRRASLFPRDP 482 (487)
T ss_dssp HHTTCCTTSTTTHHHHHHHTTCCCCEEEEEEEHHHHHHHHTTCSSGGGGCSSCCBT
T ss_pred HHcCCChhhhhHHHHHHHHhcCCCCCeEEEEhHHHHHHHHcCCCcHHheeecCCCC
Confidence 99999998 7999999999999999999999999999999999999999998643
|
| >1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-86 Score=745.27 Aligned_cols=372 Identities=23% Similarity=0.324 Sum_probs=300.7
Q ss_pred ccccccccccCCCccCCcEEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccchhhh-hhcCCCccEEEEEEEeEe
Q psy8087 54 PCEVGYITCEGPAGYIITNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILCQTEH-ALLLSTESSVQFRGRIEK 132 (658)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~~~~~-~~~l~~es~V~v~G~l~~ 132 (658)
++.++++... ..|++|+|+|||+++|.+| +++|++|||++|.||||++.+. ..+. ...|+.||+|.|+|.|..
T Consensus 4 t~~~~~l~~~----~~g~~V~l~GwV~~~R~~G-~~~Fi~LrD~~g~iQvv~~~~~-~~~~~~~~l~~e~~V~V~G~v~~ 77 (580)
T 1l0w_A 4 THYAGSLRET----HVGEEVVLEGWVNRRRDLG-GLIFLDLRDREGLVQLVAHPAS-PAYATAERVRPEWVVRAKGLVRL 77 (580)
T ss_dssp SSCGGGCCGG----GTTCEEEEEEEEEEEEECS-SCEEEEEEETTEEEEEEECTTS-TTHHHHTTCCTTCEEEEEEEEEE
T ss_pred EEEHHHhHHH----hCCCEEEEEEEEEEEecCC-CeEEEEEEECCeeEEEEEeCCh-hHHHHHhcCCCCcEEEEEEEEEc
Confidence 4566777543 5789999999999999998 5999999999999999998654 2332 357999999999999998
Q ss_pred CC-------CCccceEecC----------C---------------------CceeEEeecCCccc---------CchHHH
Q psy8087 133 VP-------EENMKVQLIH----------P---------------------SSYAIVWLGDLKQG---------GYPPEV 165 (658)
Q Consensus 133 ~p-------~~~~d~~l~~----------p---------------------~~R~l~lr~~~~~~---------~~iR~f 165 (658)
+| .+.+|+.++. | ++||||||++..++ ++||+|
T Consensus 78 ~~~~~~~~~~ge~Ei~~~~i~vl~~a~~lP~~i~~~~~~~~~~~~~~e~Rl~~RyLdLR~~~~~~~l~~Rs~i~~~iR~f 157 (580)
T 1l0w_A 78 RPEPNPRLATGRVEVELSALEVLAEAKTPPFPVDAGWRGEEEKEASEELRLKYRYLDLRRRRMQENLRLRHRVIKAIWDF 157 (580)
T ss_dssp CSSCCTTSTTTTEEEEEEEEEEEECCCCCSSCCSSGGGTCCCCCCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcCccCCCccEEEEEeEEEEeccCcCCCCCcchhccccccccCCHHHhhhhhHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 75 3333222110 1 24899999765544 699999
Q ss_pred hhhCCcEEEcCCccccccCCCCccce--eeccCC-cceeeccCHHHHHHHhcc-cCCcEEEEeeeeecCCCCCccCccee
Q psy8087 166 SLANGIAKVTPPTLVQTQVEGGSTLF--SLNFFG-EPAYLTQSSQLYLETCLP-ALGDVYCIAQSYRAENSRTRRHLAEY 241 (658)
Q Consensus 166 l~~~gF~EV~TPiL~~~~~eG~~~~F--~~~~~~-~~~~L~~Spqlylk~li~-g~~rvfeI~~~FR~E~~~~~rHl~EF 241 (658)
|.++||+|||||+|+++++|||. +| +++.++ ..+||+||||||||+||+ |++||||||||||||+++++ |+|||
T Consensus 158 l~~~gF~EVeTPiL~~s~~eGAr-~F~v~~~~~~~~~y~L~qSPQl~kq~Lmv~G~~rvfqI~~~FR~E~~~~~-r~pEF 235 (580)
T 1l0w_A 158 LDREGFVQVETPFLTKSTPEGAR-DFLVPYRHEPGLFYALPQSPQLFKQMLMVAGLDRYFQIARCFRDEDLRAD-RQPDF 235 (580)
T ss_dssp HHHTTCEECCCCSSBCCCSSSSC-CCEEECTTSTTEEEECCSCSHHHHHHHHHTTCSEEEEEEEEECCCCCCSS-CCSEE
T ss_pred HHhCCcEEEeCCEEecCCCCCCC-CccccccccCCceeECccCHHHHHHHHHHhccCCeEEEeceeeCCCCCCC-cCCCc
Confidence 99999999999999988898765 46 445554 455699999999999887 79999999999999999985 55699
Q ss_pred eeeeeEeecCCHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCCCcceeeHHHHHHHHHHcCCCCCCCCC----
Q psy8087 242 THVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGDLVRQMNPNFEPPARPFLRMNYADAIEYLRKHEIRKPDNTE---- 317 (658)
Q Consensus 242 t~lE~e~a~~d~~~~m~~~e~li~~i~~~~~~~~~~~~~~~~~~~~~~~~pf~rit~~ea~~~l~~~g~~~~~~~~---- 317 (658)
||||+||+|+|++|+|+++|+||+++++.+.+. + ++.||+||||.||++. +|.|+|+.+.
T Consensus 236 T~lE~e~af~d~~dvm~~~E~li~~i~~~v~~~----------~---~~~pf~rity~eA~~~---~g~dkpd~r~~~~~ 299 (580)
T 1l0w_A 236 TQLDLEMSFVEVEDVLELNERLMAHVFREALGV----------E---LPLPFPRLSYEEAMER---YGSDKPDLRFGLEL 299 (580)
T ss_dssp EEEEEEEESCCHHHHHHHHHHHHHHHHHHHTCC----------C---CCSSCCEEEHHHHHHH---HSSSSCCCSSCCCC
T ss_pred cceeeeecCCCHHHHHHHHHHHHHHHHHHHhCC----------c---cCCCccEEEHHHHHHH---hcCCCcccccccch
Confidence 999999999999999999999999999988642 2 2369999999999987 5777776431
Q ss_pred ----------------------------------------------------cccCCC-CCCchhhh-------------
Q psy8087 318 ----------------------------------------------------YEFGED-IPEMPERK------------- 331 (658)
Q Consensus 318 ----------------------------------------------------~~~g~~-l~~~~e~~------------- 331 (658)
..|+++ +...++++
T Consensus 300 ~d~~~~~~~~~~~~~~~~~~v~~i~~~~~~~r~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~k~l~~~~~~l~~~~~ 379 (580)
T 1l0w_A 300 KEVGPLFRQSGFRVFQEAESVKALALPKALSRKEVAELEEVAKRHKAQGLAWARVEEGGFSGGVAKFLEPVREALLQATE 379 (580)
T ss_dssp EECGGGGSSSCCTHHHHSSEEEEEEESSCCCHHHHHHHHHHHHHTSCSCCEEEEEETTEEESTTHHHHGGGHHHHHHHHC
T ss_pred hhhhhhhhccccccccccceeEEEeccCccCHHHHHHHHHHHHHcCCCcceEEEecCccccchhhhhhhHHHHHHHHHhC
Confidence 011222 21212211
Q ss_pred ----------------------------------hhcccCCcEEEEeCCCC------------CCCCCCccCCC------
Q psy8087 332 ----------------------------------MTDQINRPIMLCRFPAD------------IKSFYMSKCPE------ 359 (658)
Q Consensus 332 ----------------------------------l~~~~~~p~fi~~~P~~------------~~pfy~~~~~~------ 359 (658)
+++ ..+|+||+|||.. ++||||+...+
T Consensus 380 ~~~gd~~~~~~~~~~~~~~~Lg~lr~~l~~~~~lve~-~~~p~fV~dfP~~~~~~~~~~~~a~~~PFt~~~~~dl~~l~~ 458 (580)
T 1l0w_A 380 ARPGDTLLFVAGPRKVAATALGAVRLRAADLLGLKRE-GFRFLWVVDFPLLEWDEEEEAWTYMHHPFTSPHPEDLPLLEK 458 (580)
T ss_dssp CCTTCEEEEEEESHHHHHHHHHHHHHHHHHHTTCCCC-SCCEEEEECCBSBCCCTTTSCCCBSSCTTBCBCSTTTTHHHH
T ss_pred CCcCceEEEecCccchhhhhHHHHHHHHHHHhccccc-ccCeEEEEcCCcccccccccccccccCCccCCCchhhhhhcC
Confidence 112 4679999999986 89997665432
Q ss_pred Cc-Cc-eeEEEEEeCCcceeeeceeccCCHHHHHHHHHHcCCCCCC----CcchHHHhhcCCCCccceecchhHHHHHHh
Q psy8087 360 NP-AL-TESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGIDPAP----YYWYTDQRKYGSTPHGGYGLGLERVLCWLL 433 (658)
Q Consensus 360 ~~-~~-~~~fdL~~~G~~Ei~~G~~r~~d~~~~~~~~~~~g~~~~~----~~~yl~a~~~G~pP~gG~GiGidRL~m~l~ 433 (658)
|| .+ +++||||+||+ ||+|||+|+|||++|+++|+.+|++++. |+|||+|++||+|||||||||||||+|+||
T Consensus 459 dp~~~~a~~fDL~i~G~-Ei~~Gs~ri~d~~~q~~rf~~~g~~~ee~~~~~~~~L~al~yG~PPhgG~glGlDRLvMll~ 537 (580)
T 1l0w_A 459 DPGRVRALAYDLVLNGV-EVGGGSIRIHDPRLQARVFRLLGIGEEEQREKFGFFLEALEYGAPPHGGIAWGLDRLLALMT 537 (580)
T ss_dssp CGGGCBBSEEEEEETTE-EEEEEEEBCCCHHHHHHHHHHHTCCTTTHHHHTHHHHHHTTBTCCCEEEEEEEHHHHHHHHH
T ss_pred CccceeeeEEEEEeCCE-EEEeCeeecCCHHHHHHHHHHcCCChhHHHhHHHHHHHHHhcCCCCCceEEEcHHHHHHHHc
Confidence 57 36 99999999998 9999999999999999999999998876 899999999999999999999999999999
Q ss_pred cccCcchhhHHHHHhhhh
Q psy8087 434 NQYHVRDKYQLIAKAQLK 451 (658)
Q Consensus 434 g~~~Irdvi~f~~k~~lk 451 (658)
|.+||||||+||..+.-.
T Consensus 538 g~~sIRdVi~FP~~~~~~ 555 (580)
T 1l0w_A 538 GSPSIREVIAFPKNKEGK 555 (580)
T ss_dssp TCSSGGGGSSSCCCTTSC
T ss_pred CCCcHHeEecCCCCCCcc
Confidence 999999999997654443
|
| >1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-85 Score=744.84 Aligned_cols=372 Identities=21% Similarity=0.301 Sum_probs=296.6
Q ss_pred ccccccccccCCCccCCcEEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccchhhh-hhcCCCccEEEEEEEeEe
Q psy8087 54 PCEVGYITCEGPAGYIITNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILCQTEH-ALLLSTESSVQFRGRIEK 132 (658)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~~~~~-~~~l~~es~V~v~G~l~~ 132 (658)
++.++++... ..|++|+|+|||+++|.+| +++|++|||++|.||||++.+..+.+. ...|+.||+|.|+|.|..
T Consensus 3 t~~~~~l~~~----~~g~~V~l~GwV~~~R~~G-~~~Fi~LrD~~g~iQvv~~~~~~~~~~~~~~l~~e~~V~V~G~v~~ 77 (585)
T 1c0a_A 3 TEYCGQLRLS----HVGQQVTLCGWVNRRRDLG-SLIFIDMRDREGIVQVFFDPDRADALKLASELRNEFCIQVTGTVRA 77 (585)
T ss_dssp SSCGGGCCGG----GTTCEEEEEEEEEEEEECS-SCEEEEEEETTEEEEEEECGGGHHHHHHHTTCCTTCEEEEEEEEEE
T ss_pred eeEHHHHHHH----hCCCEEEEEEEEEEEecCC-CcEEEEEEECCeeEEEEEeCCchHHHHHHhcCCCCCEEEEEeEEEc
Confidence 4456677443 5689999999999999998 599999999999999999865423332 357999999999999998
Q ss_pred CCC---------CccceEecC----------C-------------CceeEEeecCCccc---------CchHHHhhhCCc
Q psy8087 133 VPE---------ENMKVQLIH----------P-------------SSYAIVWLGDLKQG---------GYPPEVSLANGI 171 (658)
Q Consensus 133 ~p~---------~~~d~~l~~----------p-------------~~R~l~lr~~~~~~---------~~iR~fl~~~gF 171 (658)
+|+ +.+++.++. | ++||||||++..++ ++||+||.++||
T Consensus 78 ~~~~~~n~~~~~geiEl~~~~i~vl~~a~~lP~~~~~~~~~e~Rl~~R~LdLR~~~~~~~l~~Rs~i~~~iR~fl~~~gF 157 (585)
T 1c0a_A 78 RDEKNINRDMATGEIEVLASSLTIINRADVLPLDSNHVNTEEARLKYRYLDLRRPEMAQRLKTRAKITSLVRRFMDDHGF 157 (585)
T ss_dssp CCTTTCCTTSTTTTEEEEEEEEEEEECCCSCSSCTTSCCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cCcccccccCCCccEEEEEeEEEEEeccCCCCCCccccCCHhHhhhchHhhhcCHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 864 323332211 1 24999999765544 699999999999
Q ss_pred EEEcCCccccccCCCCccce--eeccC-CcceeeccCHHHHHHHhcc-cCCcEEEEeeeeecCCCCCccCcceeeeeeeE
Q psy8087 172 AKVTPPTLVQTQVEGGSTLF--SLNFF-GEPAYLTQSSQLYLETCLP-ALGDVYCIAQSYRAENSRTRRHLAEYTHVEAE 247 (658)
Q Consensus 172 ~EV~TPiL~~~~~eG~~~~F--~~~~~-~~~~~L~~Spqlylk~li~-g~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e 247 (658)
+|||||+|+++++|||.+ | +++.+ |..+||+||||||||+||+ |++||||||||||||+++++|| |||||||+|
T Consensus 158 lEVeTPiL~~s~~eGAr~-F~v~~~~~~~~~y~L~qSPQl~kq~Lmv~G~~rvfqI~~~FR~E~~~t~r~-pEFT~lE~e 235 (585)
T 1c0a_A 158 LDIETPMLTKATPEGARD-YLVPSRVHKGKFYALPQSPQLFKQLLMMSGFDRYYQIVKCFRDEDLRADRQ-PEFTQIDVE 235 (585)
T ss_dssp EECCCCSSBCCCSSSSCC-CEEECSSSTTCEEECCSCSHHHHHHHHHTTCCEEEEEEEEECCCCCBTTBC-SEEEEEEEE
T ss_pred EEEeCCEEecCCCCCCcc-ceecccccCCceEeCccCHHHHHHHHHhcCCCceEEEeceeecCCCCCCcC-cccceeeee
Confidence 999999999888988654 6 34544 4556699999999999887 7999999999999999998555 699999999
Q ss_pred eecCCHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCCCcceeeHHHHHHHHHHcCCCCCCCCC----------
Q psy8087 248 CAFLTFDDLLDKLEDLICDTVDRVMATHGDLVRQMNPNFEPPARPFLRMNYADAIEYLRKHEIRKPDNTE---------- 317 (658)
Q Consensus 248 ~a~~d~~~~m~~~e~li~~i~~~~~~~~~~~~~~~~~~~~~~~~pf~rit~~ea~~~l~~~g~~~~~~~~---------- 317 (658)
|+|+|++|+|+++|+||+++++.+.+.+ .+ +|+||||.||++. +|.++|+.+.
T Consensus 236 ~af~d~~dvm~~~E~li~~i~~~v~~~~-------------~~-~f~r~ty~ea~~~---~g~dkpd~r~~~~l~d~~~~ 298 (585)
T 1c0a_A 236 TSFMTAPQVREVMEALVRHLWLEVKGVD-------------LG-DFPVMTFAEAERR---YGSDKPDLRNPMELTDVADL 298 (585)
T ss_dssp EESCCHHHHHHHHHHHHHHHHHHHHSCC-------------CC-SCCEEEHHHHHHH---HSCSSCCTTSCCCEEECHHH
T ss_pred ecCCCHHHHHHHHHHHHHHHHHHHhCCC-------------cc-ccceeeHHHHHHH---hcCCCccccCCceeEEehhh
Confidence 9999999999999999999999987532 11 2888888888875 4665554320
Q ss_pred -----------------------------------------------------cccCC------CCCCchhh--------
Q psy8087 318 -----------------------------------------------------YEFGE------DIPEMPER-------- 330 (658)
Q Consensus 318 -----------------------------------------------------~~~g~------~l~~~~e~-------- 330 (658)
..|++ .+...+++
T Consensus 299 ~~~~~f~~~~~~~~~~~~~~~~i~~~~~~~~~r~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~k~l~~~~~~ 378 (585)
T 1c0a_A 299 LKSVEFAVFAGPANDPKGRVAALRVPGGASLTRKQIDEYGNFVKIYGAKGLAYIKVNERAKGLEGINSPVAKFLNAEIIE 378 (585)
T ss_dssp HTTCSCHHHHHHHHCTTEEEEEEEETTGGGCCHHHHHHHHHHHHHTTCSCCCEEEESCGGGGGGGEECTTGGGSCHHHHH
T ss_pred hccCCcceehhhhhccCceEEEEEccccCccCHhhHHHHHHHHHHcCCCCceeEEecccccccccccchhhhhcCHHHHH
Confidence 01111 11111111
Q ss_pred ----------------------------------------hhhcccCCcEEEEeCCCC-----------CCCCCCccCCC
Q psy8087 331 ----------------------------------------KMTDQINRPIMLCRFPAD-----------IKSFYMSKCPE 359 (658)
Q Consensus 331 ----------------------------------------~l~~~~~~p~fi~~~P~~-----------~~pfy~~~~~~ 359 (658)
++++...+|+||+|||.. ++||||+...+
T Consensus 379 ~l~~~~~~~~~d~~~~~~~~~~~~~~~lG~lr~~l~~~~~lve~~~~~p~fV~dfP~~~~~~~~~~~a~~~PFt~~~~~d 458 (585)
T 1c0a_A 379 DILDRTAAQDGDMIFFGADNKKIVADAMGALRLKVGKDLGLTDESKWAPLWVIDFPMFEDDGEGGLTAMHHPFTSPKDMT 458 (585)
T ss_dssp HHHHHTTCCTTCEEEEEEEEHHHHHHHHHHHHHHHHHHTTCSCSSCCCEEEEECCBSEEECSSSCEEESSCTTBCBSSCC
T ss_pred HHHHHhCCCcCcEEEEecCcccchhhhhHHHHHHHHHHhCcccccccccEEEEeCCccccccccccccccCCccCCCchh
Confidence 122224579999999996 89997765432
Q ss_pred ------Cc-Cc-eeEEEEEeCCcceeeeceeccCCHHHHHHHHHHcCCCCCC----CcchHHHhhcCCCCccceecchhH
Q psy8087 360 ------NP-AL-TESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGIDPAP----YYWYTDQRKYGSTPHGGYGLGLER 427 (658)
Q Consensus 360 ------~~-~~-~~~fdL~~~G~~Ei~~G~~r~~d~~~~~~~~~~~g~~~~~----~~~yl~a~~~G~pP~gG~GiGidR 427 (658)
|| .+ +++||||+||+ ||+|||+|+|||++|+++|+.+|++++. |+|||+|++||+||||||||||||
T Consensus 459 l~~l~~dp~~~~a~~fDL~i~G~-Ei~~Gs~ri~d~~~q~~rf~~~g~~~ee~~~~~~~yL~al~yG~PPhgG~glGlDR 537 (585)
T 1c0a_A 459 AAELKAAPENAVANAYDMVINGY-EVGGGSVRIHNGDMQQTVFGILGINEEEQREKFGFLLDALKYGTPPHAGLAFGLDR 537 (585)
T ss_dssp HHHHHHSCTTCBBSEEEEEETTE-EEEEEEEBCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTTCCCEEEEEEEHHH
T ss_pred hhhhccCCcceeeeEEEEEECCE-EEeeeeeecCCHHHHHHHHHHcCCChHHHHhhHHHHHHHHhcCCCCceeEEEcHHH
Confidence 67 36 99999999998 9999999999999999999999998765 889999999999999999999999
Q ss_pred HHHHHhcccCcchhhHHHHHhhh
Q psy8087 428 VLCWLLNQYHVRDKYQLIAKAQL 450 (658)
Q Consensus 428 L~m~l~g~~~Irdvi~f~~k~~l 450 (658)
|+|+|||.+||||||+||..+.-
T Consensus 538 Lvmlltg~~sIRdVi~FPr~~~~ 560 (585)
T 1c0a_A 538 LTMLLTGTDNIRDVIAFPKTTAA 560 (585)
T ss_dssp HHHHHHTCSCGGGGSSSCCCTTS
T ss_pred HHHHHcCCCcHHheecCCCCCCc
Confidence 99999999999999999755443
|
| >4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-78 Score=678.57 Aligned_cols=373 Identities=21% Similarity=0.281 Sum_probs=296.2
Q ss_pred CCccccccccccCCCccCCcEEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccc--hhhh-hhcCCCccEEEEEE
Q psy8087 52 PSPCEVGYITCEGPAGYIITNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILC--QTEH-ALLLSTESSVQFRG 128 (658)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~--~~~~-~~~l~~es~V~v~G 128 (658)
.++++++++... ..|++|+|+|||+++|. + +|++|||++|.||||++++.. +.+. ...|+.||+|.|+|
T Consensus 10 ~rt~~~~~l~~~----~~g~~V~l~GwV~~~R~-~---~Fi~LrD~~g~iQvv~~~~~~~~~~~~~~~~l~~e~~V~V~G 81 (617)
T 4ah6_A 10 VRTNTCGELRSS----HLGQEVTLCGWIQYRRQ-N---TFLVLRDFDGLVQVIIPQDESAASVKKILCEAPVESVVQVSG 81 (617)
T ss_dssp SCSSCGGGCCGG----GTTCEEEEEEEECCCCT-T---TEEEEECSSCEEEEECCCSSSSHHHHHHHHHCCSSCEEEEEE
T ss_pred cCceEHHHhHHH----hCCCEEEEEEEeeeecC-e---EEEEEEeCCcCEEEEEeCCcCcHHHHHHHhcCCCCCEEEEEE
Confidence 346677888554 67899999999999874 3 599999999999999987653 2232 35799999999999
Q ss_pred EeEeCCC---------CccceEecC----------C---------------CceeEEeecCCccc---------CchHHH
Q psy8087 129 RIEKVPE---------ENMKVQLIH----------P---------------SSYAIVWLGDLKQG---------GYPPEV 165 (658)
Q Consensus 129 ~l~~~p~---------~~~d~~l~~----------p---------------~~R~l~lr~~~~~~---------~~iR~f 165 (658)
.|..+|. +.+|+.++. | ++||||||++..++ ++||+|
T Consensus 82 ~v~~~~~~~~n~~~~tgeiEl~~~~i~vL~~a~~lP~~~~~~~~~~ee~Rl~~R~LdLR~~~~~~~lr~Rs~i~~~iR~f 161 (617)
T 4ah6_A 82 TVISRPAGQENPKMPTGEIEIKVKTAELLNACKKLPFEIKNFVKKTEALRLQYRYLDLRSFQMQYNLRLRSQMVMKMREY 161 (617)
T ss_dssp EEEECSTTCCCTTSTTTTEEEEEEEEEEEECBCCCSSCTTTTCCSCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeCCccccCccCCCCcEEEEEeEEEEeecCCCCCcccccccccChhhhccceeeeecchHHHHHHHHHHHHHHHHHHH
Confidence 9987653 233322210 1 24999999986554 699999
Q ss_pred hh-hCCcEEEcCCccccccCCCCccceee--ccCCcceeeccCHHHHHHHhcc-cCCcEEEEeeeeecCCCCCccCccee
Q psy8087 166 SL-ANGIAKVTPPTLVQTQVEGGSTLFSL--NFFGEPAYLTQSSQLYLETCLP-ALGDVYCIAQSYRAENSRTRRHLAEY 241 (658)
Q Consensus 166 l~-~~gF~EV~TPiL~~~~~eG~~~~F~~--~~~~~~~~L~~Spqlylk~li~-g~~rvfeI~~~FR~E~~~~~rHl~EF 241 (658)
|. ++||+||+||+|+++++||| .+|.+ +++|+++||+||||||||+||+ |++||||||||||||++++ +|+|||
T Consensus 162 ~~~~~gF~EVeTPiL~~st~~GA-~~F~v~~~~~g~~~~L~qSpql~kq~l~v~g~~rvfqi~~~FR~E~~~t-~r~pEF 239 (617)
T 4ah6_A 162 LCNLHGFVDIETPTLFKRTPGGA-KEFLVPSREPGKFYSLPQSPQQFKQLLMVGGLDRYFQVARCYRDEGSRP-DRQPEF 239 (617)
T ss_dssp HHTTSCCEECCCCSSBCCCCSSS-CCCEEECSSTTCEEECCSSTTHHHHHHHHTSCSEEEEEEEEECCCSSCS-SSCSEE
T ss_pred HHhcCCeEEEeCCeeccCCCCCC-cCceeccccCCcccccccCHHHHHHHHHhcccCcEEEEEhheecccCCC-CcCcce
Confidence 96 79999999999998888665 55744 5678999999999999999887 8999999999999999988 679999
Q ss_pred eeeeeEeecCCHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCCCcceeeHHHHHHHHHHcCCCCCCCCCc---
Q psy8087 242 THVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGDLVRQMNPNFEPPARPFLRMNYADAIEYLRKHEIRKPDNTEY--- 318 (658)
Q Consensus 242 t~lE~e~a~~d~~~~m~~~e~li~~i~~~~~~~~~~~~~~~~~~~~~~~~pf~rit~~ea~~~l~~~g~~~~~~~~~--- 318 (658)
||||+||+|+|++|+|+++|+||+++++.+. . .+..||+||||.||+.. +|+|+||++..
T Consensus 240 t~lE~e~af~d~~d~m~~~E~l~~~~~~~~~-----------~---~~~~pf~r~ty~eA~~~---ygsDkPDlR~~~ei 302 (617)
T 4ah6_A 240 TQIDIEMSFVDQTGIQSLIEGLLQYSWPNDK-----------D---PVVVPFPTMTFAEVLAT---YGTDKPDTRFGMKI 302 (617)
T ss_dssp EEEEEEEESCCHHHHHHHHHHHHHHHSCSSS-----------C---CCCSSCCEEEHHHHHHH---TSSSSCCSSSCCCE
T ss_pred ecceeeecCCCHHHHHHHHHHHHHHHHHHhc-----------C---ccCCCceEeEHHHHHHH---HcCCCCccccCccc
Confidence 9999999999999999999999999875321 1 23579999999999986 79999987520
Q ss_pred -------------------c---------------------------------cCC---------C--CCCchhh-----
Q psy8087 319 -------------------E---------------------------------FGE---------D--IPEMPER----- 330 (658)
Q Consensus 319 -------------------~---------------------------------~g~---------~--l~~~~e~----- 330 (658)
. +|. + +.....+
T Consensus 303 ~DVtdif~~s~FkVF~~~~~~~~g~VkAI~vpg~a~~lsRK~id~L~e~ak~~~g~ggl~~~~~~d~~~~~~I~Kflsee 382 (617)
T 4ah6_A 303 IDISDVFRNTEIGFLQDALSKPHGTVKAICIPEGAKYLKRKDIESIRNFAADHFNQEILPVFLNANRNWNSPVANFIMES 382 (617)
T ss_dssp EECGGGGSSCCCHHHHHHTTSTTEEEEEEEEESCTTTSCTTTHHHHHHHHHHSSCCCEEEECSSTTTTSSCTTHHHHHHH
T ss_pred ccHHHHhccCCchhHhhhhhcCCCeEEEEEcCCCccccchhhHHHHHHHHHHhcCCceEEEEEecCCccccchhhhcCHH
Confidence 0 000 0 0000000
Q ss_pred ------------------------------------hhhcc-------c-----CCcEEEEeCCC-------------CC
Q psy8087 331 ------------------------------------KMTDQ-------I-----NRPIMLCRFPA-------------DI 349 (658)
Q Consensus 331 ------------------------------------~l~~~-------~-----~~p~fi~~~P~-------------~~ 349 (658)
.+.+. + -.++||+|||. .+
T Consensus 383 ~~~~L~e~l~a~~GDlIff~Ag~~~~v~~~LG~LR~~l~~~L~~~~~~l~~~~~~~f~WvvdfPlf~~~~~~~~~~~a~H 462 (617)
T 4ah6_A 383 QRLELIRLMETQEEDVVLLTAGEHNKACSLLGKLRLECADLLETRGVVLRDPTLFSFLWVVDFPLFLPKEENPRELESAH 462 (617)
T ss_dssp HHHHHHHHHTCCSSEEEEEEEEEHHHHHHHHHHHHHHHHHHHHTTSCCSCCTTSCCEEEEECCBSBCCCSSSSSSCCBSS
T ss_pred HHHHHHHHhCCCCCCEEEEecCChHHHHHHHHHHHHHHHHHhhhccccccCCCCeEEEEEeccCCcCCccccccceeecc
Confidence 01111 1 24799999995 58
Q ss_pred CCCCCccCCCC-------c--CceeEEEEEeCCcceeeeceeccCCHHHHHHHHH-HcCCCCCCCcchHHHhhcCCCCcc
Q psy8087 350 KSFYMSKCPEN-------P--ALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYK-REGIDPAPYYWYTDQRKYGSTPHG 419 (658)
Q Consensus 350 ~pfy~~~~~~~-------~--~~~~~fdL~~~G~~Ei~~G~~r~~d~~~~~~~~~-~~g~~~~~~~~yl~a~~~G~pP~g 419 (658)
+||+| ++++| | ..+.+|||++||+ ||+|||+|+||+++|+++|+ ..|++++.|+|||+|++||+||||
T Consensus 463 hPFT~-P~~~d~~~l~~~p~~~~a~~ydlv~~g~-El~~gs~ri~~~~~q~~~f~~~~~~~~~~~~~~l~a~~~G~pphg 540 (617)
T 4ah6_A 463 HPFTA-PHPSDIHLLYTEPKKARSQHYDLVLNGN-EIGGGSIRIHNAELQRYILATLLKEDVKMLSHLLQALDYGAPPHG 540 (617)
T ss_dssp CSSCC-CCCTTSTHHHHSTTSSBCCCEEEEETTE-EEEEEECCCCSHHHHHHHHHHHCSSTHHHHHHHHHHHTBTCCCEE
T ss_pred CCcCC-CChhhHHHhhcChhhhhhceEEEEECCE-EEeeeeEEcCCHHHHHHHHHHhhccchhhHHHHHHHHHcCCCCCC
Confidence 89955 45544 2 3589999999996 99999999999999999999 778887779999999999999999
Q ss_pred ceecchhHHHHHHhcccCcchhhHHHHHhhhhhh
Q psy8087 420 GYGLGLERVLCWLLNQYHVRDKYQLIAKAQLKKV 453 (658)
Q Consensus 420 G~GiGidRL~m~l~g~~~Irdvi~f~~k~~lk~~ 453 (658)
|||+|+|||+|+|+|.+||||||+||....-.+.
T Consensus 541 G~a~G~dRlvml~~g~~~irdvi~fP~~~~~~d~ 574 (617)
T 4ah6_A 541 GIALGLDRLICLVTGSPSIRDVIAFPKSFRGHDL 574 (617)
T ss_dssp EEEEEHHHHHHHHHTCSSGGGSSSSCCCSSSCCS
T ss_pred ceeecHHHHHHHHcCCCchheEEecCCCCCcccc
Confidence 9999999999999999999999999965444433
|
| >3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-72 Score=599.18 Aligned_cols=263 Identities=20% Similarity=0.310 Sum_probs=227.6
Q ss_pred CchHHHhhhCCcEEEcCCccccccCCCC-ccceeeccCC------cceeeccCHHHHHHHhcc-cCCcEEEEeeeeecCC
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQVEGG-STLFSLNFFG------EPAYLTQSSQLYLETCLP-ALGDVYCIAQSYRAEN 231 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~eG~-~~~F~~~~~~------~~~~L~~Spqlylk~li~-g~~rvfeI~~~FR~E~ 231 (658)
++||+||.++||+||+||+|++++++|| +++|.++||+ .++||+||||||||+|++ |++||||||||||||+
T Consensus 44 ~~iR~ff~~~gF~EVeTPiL~~~~~~~a~~~~F~~~~~~~~~~~~~~~yL~~Spql~~k~l~~~g~~rvyqIg~~FR~E~ 123 (345)
T 3a5y_A 44 AEIRRFFADRGVLEVETPCMSQATVTDIHLVPFETRFVGPGHSQGMNLWLMTSPEYHMKRLLVAGCGPVFQLCRSFRNEE 123 (345)
T ss_dssp HHHHHHHHHTTCEECCCCSEESSCCCCTTCCCCEEEECCSTTSCCEEEEECSCSHHHHHHHHHTTCCSEEEEEEEECCCC
T ss_pred HHHHHHHHHCCCEEEECCEEEecCCCCCccceEEEEecCcccccCCCEeecCCHHHHHHHHHHcCCCcEEEEEcceeCCC
Confidence 6999999999999999999997777654 7899999997 789999999999998876 8999999999999999
Q ss_pred CCCccCcceeeeeeeEeecCCHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCCCcceeeHHHHHHHHHHcCCC
Q psy8087 232 SRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGDLVRQMNPNFEPPARPFLRMNYADAIEYLRKHEIR 311 (658)
Q Consensus 232 ~~~~rHl~EFt~lE~e~a~~d~~~~m~~~e~li~~i~~~~~~~~~~~~~~~~~~~~~~~~pf~rit~~ea~~~l~~~g~~ 311 (658)
+ +.||||||||||+||+|+|++|+|+++|+||+++++ . .||+||||.||++.+ .|++
T Consensus 124 ~-~~rH~pEFt~lE~e~af~d~~d~m~~~E~li~~v~~-----~---------------~~~~rity~ea~~~~--~g~d 180 (345)
T 3a5y_A 124 M-GRYHNPEFTMLEWYRPHYDMYRLMNEVDDLLQQVLD-----C---------------PAAESLSYQQAFLRY--LEID 180 (345)
T ss_dssp C-BTTBCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHC-----C---------------CCCEEEEHHHHHHHH--TCCC
T ss_pred C-cccccchhheeeeeeeCCCHHHHHHHHHHHHHHHHc-----C---------------CCCcEeeHHHHHHHH--hCCC
Confidence 9 679999999999999999999999999999999985 0 389999999999875 4665
Q ss_pred CCCCC-------------C-cccC-CCCCCchhhhh----hccc--CCcEEEEeCCCCCCCCCCccCCCCcCceeEEEEE
Q psy8087 312 KPDNT-------------E-YEFG-EDIPEMPERKM----TDQI--NRPIMLCRFPADIKSFYMSKCPENPALTESVDVL 370 (658)
Q Consensus 312 ~~~~~-------------~-~~~g-~~l~~~~e~~l----~~~~--~~p~fi~~~P~~~~pfy~~~~~~~~~~~~~fdL~ 370 (658)
++... . ..++ .++..+.++++ ++.+ .+|+||+|||..++|| ++.++++|.++++||||
T Consensus 181 ~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~e~~l~~~ve~~lg~~~p~fv~dyP~~~~~~-~~~~~~~~~~a~~fDL~ 259 (345)
T 3a5y_A 181 PLSADKTQLREVAAKLDLSNVADTEEDRDTLLQLLFTFGVEPNIGKEKPTFVYHFPASQASL-AQISTEDHRVAERFEVY 259 (345)
T ss_dssp TTCCC------------------------HHHHHHHHHHTGGGSSSSSCEEEECCBGGGCTT-BCBCSSCTTBBSEEEEE
T ss_pred CCCCCHHHHHHHHHHcCCcccCCCcCCHhHHHHHHHHHHHHHHcCCCCEEEEECCChhhChh-hCCCCCCCCeEEEEEEE
Confidence 43210 0 2222 34454555544 4445 5799999999999999 78888999999999999
Q ss_pred eCCcceeeeceeccCCHHHHHHHHHHc-------CCCCCCC-cchHHHhhcCCCCccceecchhHHHHHHhcccCcchhh
Q psy8087 371 FPNVGEVIGGSMRIWDPEELLAGYKRE-------GIDPAPY-YWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRDKY 442 (658)
Q Consensus 371 ~~G~~Ei~~G~~r~~d~~~~~~~~~~~-------g~~~~~~-~~yl~a~~~G~pP~gG~GiGidRL~m~l~g~~~Irdvi 442 (658)
++|+ ||+|||+|+|||++|++||+++ |++++.+ +|||+|++||+|||||||||||||+|+|||.+||||||
T Consensus 260 ~~G~-Ei~~G~~rl~d~~~q~~rf~~~~~~~~~~g~~~~~~d~~yl~al~yG~PPhgG~glGiDRLvmll~g~~~IRdVi 338 (345)
T 3a5y_A 260 YKGI-ELANGFHELTDAREQQQRFEQDNRKRAARGLPQHPIDQNLIEALKVGMPDCSGVALGVDRLVMLALGAETLAEVI 338 (345)
T ss_dssp ETTE-EEEEEEEBCCCHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHCCCSEEEEEEEHHHHHHHHHTCSSGGGGS
T ss_pred ECCE-EEeeeEEEeCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCCcEEEEcHHHHHHHHcCCCcHheEe
Confidence 9998 9999999999999999999985 8888877 68999999999999999999999999999999999999
Q ss_pred HHHHH
Q psy8087 443 QLIAK 447 (658)
Q Consensus 443 ~f~~k 447 (658)
+||..
T Consensus 339 ~FPr~ 343 (345)
T 3a5y_A 339 AFSVD 343 (345)
T ss_dssp SSCTT
T ss_pred cCCcc
Confidence 99854
|
| >1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-64 Score=530.85 Aligned_cols=263 Identities=19% Similarity=0.378 Sum_probs=234.3
Q ss_pred eeEEeecCCccc---------CchHHHhhhCCcEEEcCCccccc--------cCCCCccceeeccCCcceeeccCHHHHH
Q psy8087 148 YAIVWLGDLKQG---------GYPPEVSLANGIAKVTPPTLVQT--------QVEGGSTLFSLNFFGEPAYLTQSSQLYL 210 (658)
Q Consensus 148 R~l~lr~~~~~~---------~~iR~fl~~~gF~EV~TPiL~~~--------~~eG~~~~F~~~~~~~~~~L~~Spqlyl 210 (658)
|++|||++ .++ ++||+||.++||+||+||+|.++ .+|| +++|.++|+|.++||++|||+|+
T Consensus 3 r~l~lr~~-~~~~~~~rs~i~~~ir~~f~~~GF~EVeTP~l~~~~~~~~~~~~~e~-a~~f~~~~~~~~~~L~~Spe~~~ 80 (294)
T 1nnh_A 3 AVEIISRE-ISPTLDIQTKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAGEG-MEPAEVEIYGVKMRLTHSMILHK 80 (294)
T ss_dssp HHHHHTSC-CHHHHHHHHHHHHHHHHHHHHTTCEEECCCCEESCCCCCCSCTTCCC-CCCCEEEETTEEEEECSCSHHHH
T ss_pred hHHhhhcc-hHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEccchhccCCCCCc-ceeEEEEcCCCCEEeccChHHHH
Confidence 89999998 544 59999999999999999999887 6766 88999999999999999999999
Q ss_pred HHhcc-cCCcEEEEeeeeecCC--CCCccCcceeeeeeeEeecCCHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCC
Q psy8087 211 ETCLP-ALGDVYCIAQSYRAEN--SRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGDLVRQMNPNFE 287 (658)
Q Consensus 211 k~li~-g~~rvfeI~~~FR~E~--~~~~rHl~EFt~lE~e~a~~d~~~~m~~~e~li~~i~~~~~~~~~~~~~~~~~~~~ 287 (658)
|++++ |++|||+||||||||+ +++.||+|||||||+|++|.|++|+|+++|+|+++++..+.+.. +..+.
T Consensus 81 ~~l~~~g~~rvf~ig~~FR~E~pq~~~~RH~~EFtqle~e~~~~~~~~l~~~~e~l~~~l~~~~~~~~-------~~~i~ 153 (294)
T 1nnh_A 81 QLAIAMGLKKIFVLSPNIRLESRQKDDGRHAYEFTQLDFEVERAKMEDIMRLIERLVYGLFRKAEEWT-------GREFP 153 (294)
T ss_dssp HHHHHTTCCEEEEEEEEECCCCGGGCSSSCCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHHHHH-------SSCCC
T ss_pred HHHhhcCccceEEEEccEeCCCCCCCCCccccceeEEEEEecCCCHHHHHHHHHHHHHHHHHHHHhhh-------ccccc
Confidence 99987 6999999999999999 88789999999999999999999999999999999998876421 11221
Q ss_pred CCCCCcceeeHHHHHHHHHHcCCCCCCCCCcccCCCCCCchhhhhhcccCCcEEEEeCCCCCCCCCCccCCCCcCceeEE
Q psy8087 288 PPARPFLRMNYADAIEYLRKHEIRKPDNTEYEFGEDIPEMPERKMTDQINRPIMLCRFPADIKSFYMSKCPENPALTESV 367 (658)
Q Consensus 288 ~~~~pf~rit~~ea~~~l~~~g~~~~~~~~~~~g~~l~~~~e~~l~~~~~~p~fi~~~P~~~~pfy~~~~~~~~~~~~~f 367 (658)
.+ .+|+|+||.||++. .|. .+|+ ++.+.+|+||+||| +|||++. ||+++++|
T Consensus 154 ~~-~~~~r~~y~ea~~~---~g~----------------~~er--~~~~~~P~~v~~~P---~pf~~~~---d~~~~~~~ 205 (294)
T 1nnh_A 154 KT-KRFEVFEYSEVLEE---FGS----------------DEKA--SQEMEEPFWIINIP---REFYDRE---VDGFWRNY 205 (294)
T ss_dssp CC-SSCEEEEHHHHHHH---TSS----------------HHHH--HHHCSSCEEEECCC---CCTTBCE---ETTEECEE
T ss_pred cC-CCceEeEHHHHHHH---hCC----------------hHhh--hhhcCCCEEEEcCC---hHHhCCC---CCCeEEEE
Confidence 12 24999999999963 442 2344 34467899999999 9998876 78899999
Q ss_pred EEEeC-CcceeeeceeccCCHHHHHHHHHHcCCCCCCCcchHHHhhcCCC-CccceecchhHHHHHHhcccCcchhhHHH
Q psy8087 368 DVLFP-NVGEVIGGSMRIWDPEELLAGYKREGIDPAPYYWYTDQRKYGST-PHGGYGLGLERVLCWLLNQYHVRDKYQLI 445 (658)
Q Consensus 368 dL~~~-G~~Ei~~G~~r~~d~~~~~~~~~~~g~~~~~~~~yl~a~~~G~p-P~gG~GiGidRL~m~l~g~~~Irdvi~f~ 445 (658)
|||++ |+|||+|||+|+|||++|.++|+..|++++.|+|||+|++||+| ||||||||+|||+|+++|.+||||||+||
T Consensus 206 Dl~~~~g~~Ei~~g~~r~~d~~~l~~~~~~~g~~~~~~~~~l~~l~~G~p~P~~G~glGieRL~mll~g~~~Irdvi~Fp 285 (294)
T 1nnh_A 206 DLILPYGYGEVASGGEREWEYEKIVAKIRKAGLNEDSFRPYLEIAKAGKLKPSAGAGIGVERLVRFIVGAKHIAEVQPFP 285 (294)
T ss_dssp EEEETTTTEEEEEEEEBCCCHHHHHHHHHHTTCCGGGGHHHHHHHHTTCCCCEEEEEEEHHHHHHHHHTCSSGGGGCSSC
T ss_pred EEEECCCcEEEecCeeecCCHHHHHHHHHHcCCCccCHHHHHHHHhcCCCCCceEEEEcHHHHHHHHhCCCCHHHEEecc
Confidence 99999 98999999999999999999999999999999999999999999 99999999999999999999999999997
Q ss_pred HH
Q psy8087 446 AK 447 (658)
Q Consensus 446 ~k 447 (658)
..
T Consensus 286 ~~ 287 (294)
T 1nnh_A 286 RI 287 (294)
T ss_dssp CC
T ss_pred CC
Confidence 53
|
| >3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A | Back alignment and structure |
|---|
Probab=99.97 E-value=7e-31 Score=289.01 Aligned_cols=164 Identities=34% Similarity=0.611 Sum_probs=142.0
Q ss_pred CCCCccceeecccCCccCCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCC-ccchHHhccCCCCcEEEEEEEE
Q psy8087 494 PSLPPAVRIKIKDGEKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADI-LCQTEHALLLSTESSVQFRGRI 572 (658)
Q Consensus 494 ~~~~~~~~~~i~~~~~~~g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~-~~~~~~~~~L~~gs~V~V~G~v 572 (658)
.++|.+++++|+++..+.|++|+|+|||+++|++||+++|++|||++|.||||++++ ......+..|+.||+|.|+|+|
T Consensus 12 ~~~~~~~~~~i~~~~~~~g~~V~v~Gwv~~~R~~Gk~~~Fi~LrD~sg~iQvv~~~~~~~~~~~~~~l~~g~~V~V~G~v 91 (456)
T 3m4p_A 12 TPVETPIVCNIRDAAGLEGKLVTFKGWAYHIRKARKTLIFVELRDGSGYCQCVIFGKELCEPEKVKLLTRECSLEITGRL 91 (456)
T ss_dssp ----CCCCEECCSTTCCCSSEEEEEEEEEEEECCSSSEEEEEEECSSCEEEEEEESTTTTCHHHHTTCCTTCEEEEEEEE
T ss_pred cCCCcceEEEhhhhhhcCCCEEEEEEEEEEEecCCCceEEEEEEeCCccEEEEEecccchhhHHhhcCCCccEEEEEeEE
Confidence 467888999999998899999999999999999998899999999999999999873 2222335579999999999999
Q ss_pred EecCCCCCCC-----CceEEEEEEEEEEecCCCCCCCcccCCCCChhhhcccceeeeechhhHHHHHHHHHHHHHHHHHh
Q psy8087 573 EKVPEGKSAP-----GGHELKVDYWEVVGLAPAGGADAILNEEALPDVQLDNRHIMIRGENTSRVLLMRSVLLQALRAHF 647 (658)
Q Consensus 573 ~~~~~~~~~~-----g~~El~~~~i~vls~~~~~~~~~~~~~~~~~e~r~~~R~LdLR~~~~~~ifr~Rs~i~~~iR~fL 647 (658)
++++.++.++ |++||++++++||++|+. +++...++.++.|+|+++||||||++.++++|++||+|+++||+||
T Consensus 92 ~~~~~~~~~~~~~t~g~~El~~~~i~vl~~a~~-~~~~~~~~~~~~e~r~~~R~LdlR~~~~~~~lr~Rs~i~~~iR~ff 170 (456)
T 3m4p_A 92 NAYAGKNHPPEIADILNLEMQVTEWKVIGESPI-DLENIINKDSSIPQKMQNRHIVIRSEHTQQVLQLRSEIQWYFRKYY 170 (456)
T ss_dssp ECCCSSSCCCSCTTBCSSEEEEEEEEEEECCCG-GGTTTSCTTCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred EecCCcccCcccCCCCcEEEEEeEEEEEecCCC-CCcccccccCCHHHHhhchHHhhhcHHHHHHHHHHHHHHHHHHHHH
Confidence 9988655444 999999999999999963 2334445678999999999999999999999999999999999999
Q ss_pred hcCCcEEecCC
Q psy8087 648 ADRNYTEVNIE 658 (658)
Q Consensus 648 ~~~gF~EVeTp 658 (658)
+++||+|||||
T Consensus 171 ~~~gF~EVeTP 181 (456)
T 3m4p_A 171 HDNHFTEIQPP 181 (456)
T ss_dssp HHTTCEECCCC
T ss_pred HhCCCEEEeCC
Confidence 99999999999
|
| >3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-29 Score=283.78 Aligned_cols=180 Identities=13% Similarity=0.115 Sum_probs=146.9
Q ss_pred HHHHHHHHhHHHHHhcccCCCCCCCc---------cceeecccCCccCCcEEEEEEEEEeeecCCCceEEEEEEeCCEEE
Q psy8087 473 EDAEKREKNLEEAKKIVLKEDPSLPP---------AVRIKIKDGEKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFI 543 (658)
Q Consensus 473 ~~~~~~~~~l~~~~~~~~~~~~~~~~---------~~~~~i~~~~~~~g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~i 543 (658)
++.+.|.++++++++.++.+++.... .+|..+.......|++|+|+|||+++|.+|||++|++|||++|.|
T Consensus 7 ~~~~~r~~k~~~l~~~g~~pyp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~Grv~~~R~~gkk~~F~~LrD~sg~i 86 (521)
T 3bju_A 7 QYYKIRSQAIHQLKVNGEDPYPHKFHVDISLTDFIQKYSHLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKL 86 (521)
T ss_dssp HHHHHHHHHHHHHHHTTCCSSCSCCCCCSCHHHHHHHHTTCCTTCBCSSCCEEEEEEEEEEEESSSSEEEEEEEETTEEE
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCcCcCccchHHHHHHhhhhccccccCCcEEEEEEEEEEEecCCCCcEEEEEEECCEEE
Confidence 45567888999999998888764221 122223322344578999999999999999789999999999999
Q ss_pred EEEEcCCcc----chH-HhccCCCCcEEEEEEEEEecCCCCCCCCceEEEEEEEEEEecCCCCCCCcccCCCCChhhhcc
Q psy8087 544 QCVLADILC----QTE-HALLLSTESSVQFRGRIEKVPEGKSAPGGHELKVDYWEVVGLAPAGGADAILNEEALPDVQLD 618 (658)
Q Consensus 544 Qvv~~~~~~----~~~-~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~El~~~~i~vls~~~~~~~~~~~~~~~~~e~r~~ 618 (658)
|||++.+.. .+. +...|+.||+|+|+|+|.+++ +|++||.|++|++|++|.. ++|...++..++++|++
T Consensus 87 Qvv~~~~~~~~~~~~~~~~~~l~~gd~V~V~G~v~~t~-----~ge~ei~~~~i~~l~~~~~-~lP~~~~~~~~~e~r~r 160 (521)
T 3bju_A 87 QVMANSRNYKSEEEFIHINNKLRRGDIIGVQGNPGKTK-----KGELSIIPYEITLLSPCLH-MLPHLHFGLKDKETRYR 160 (521)
T ss_dssp EEEEEGGGSSCHHHHHHHHHHCCTTCEEEEEEEEEECT-----TCCEEEEEEEEEEEECCCS-CCCCC----CCHHHHHH
T ss_pred EEEEECCccCCHHHHHHHHhcCCCCCEEEEEEEEEecC-----CCCEEEEEeEEEEeecCCC-CCCCccccccChhhhhh
Confidence 999986432 233 346799999999999998876 7899999999999999963 55655555689999999
Q ss_pred cceeeeec-hhhHHHHHHHHHHHHHHHHHhhcCCcEEecCC
Q psy8087 619 NRHIMIRG-ENTSRVLLMRSVLLQALRAHFADRNYTEVNIE 658 (658)
Q Consensus 619 ~R~LdLR~-~~~~~ifr~Rs~i~~~iR~fL~~~gF~EVeTp 658 (658)
+||||||+ +.++++|++||+|+++||+||+++||+|||||
T Consensus 161 ~RyLdLr~~~~~~~~~r~Rs~i~~~iR~f~~~~gF~EVeTP 201 (521)
T 3bju_A 161 QRYLDLILNDFVRQKFIIRSKIITYIRSFLDELGFLEIETP 201 (521)
T ss_dssp CHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCC
T ss_pred hhhhhHhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCc
Confidence 99999995 89999999999999999999999999999999
|
| >2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=8.6e-30 Score=279.69 Aligned_cols=155 Identities=52% Similarity=0.912 Sum_probs=127.7
Q ss_pred ecccCCccCCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCcc-chHHhccCCCCcEEEEEEEEEecCCCCCC
Q psy8087 503 KIKDGEKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILC-QTEHALLLSTESSVQFRGRIEKVPEGKSA 581 (658)
Q Consensus 503 ~i~~~~~~~g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~~-~~~~~~~L~~gs~V~V~G~v~~~~~~~~~ 581 (658)
+|.++..+.|++|+|+|||+++|++||+++|++|||++|.||||++.+.. .+.. ..|+.||+|.|+|+|.++++++++
T Consensus 2 ~i~~~~~~~~~~V~v~Gwv~~~R~~Gk~~~Fi~LrD~~g~iQvv~~~~~~~~~~~-~~l~~~~~v~v~G~v~~~~~~~~~ 80 (435)
T 2xgt_A 2 KIRDLVKHRNERVCIKGWIHRMRRQGKSLMFFILRDGTGFLQVLLMDKLCQTYDA-LTVNTECTVEIYGAIKEVPEGKEA 80 (435)
T ss_dssp CGGGGGGGTTSEEEEEEEEEEEEECTTSEEEEEEECSSCEEEEEEEGGGGSSHHH-HHCCTTCEEEEEEEEEECC-----
T ss_pred chhhhhhcCCCEEEEEEEEEEecccCCCcEEEEEEECCceEEEEECCcchhHHHH-hcCCCCCEEEEEEEEEecCCCcCC
Confidence 46666678899999999999999999889999999999999999985322 2332 369999999999999998877778
Q ss_pred CCceEEEEEEEEEEecCCCCCCCcccCCCCChhhhcccceeeeechhhHHHHHHHHHHHHHHHHHhhcCCcEEecCC
Q psy8087 582 PGGHELKVDYWEVVGLAPAGGADAILNEEALPDVQLDNRHIMIRGENTSRVLLMRSVLLQALRAHFADRNYTEVNIE 658 (658)
Q Consensus 582 ~g~~El~~~~i~vls~~~~~~~~~~~~~~~~~e~r~~~R~LdLR~~~~~~ifr~Rs~i~~~iR~fL~~~gF~EVeTp 658 (658)
+|++||.++++++|+++++....++..+.+++|+|+++||||||++.++++|++||+|+++||+||+++||+|||||
T Consensus 81 ~g~~El~~~~~~vl~~~~p~~~~pl~~~~~~~e~r~~~R~Ldlr~~~~~~~~r~Rs~i~~~iR~ff~~~gFlEVeTP 157 (435)
T 2xgt_A 81 PNGHELIADFWKIIGNAPPGGIDNVLNEEASVDKMLDNRHLVIRGENAAALLRLRAAATRAMREHFYNAGYVEVAPP 157 (435)
T ss_dssp -TTEEEEEEEEEEEECCCTTHHHHHCC--CCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCC
T ss_pred CCcEEEEEEEEEEeecCCCcccccccccCCCHHHHhhCeeeeecCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECC
Confidence 89999999999999985311112233457899999999999999999999999999999999999999999999999
|
| >4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.4e-29 Score=278.44 Aligned_cols=180 Identities=17% Similarity=0.165 Sum_probs=142.8
Q ss_pred hhHHHHHHHHhHHHHHhcccCCCCCCCc--c-------ceeecccC-CccCCcEEEEEEEEEeeecCCCceEEEEEEeCC
Q psy8087 471 EEEDAEKREKNLEEAKKIVLKEDPSLPP--A-------VRIKIKDG-EKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGS 540 (658)
Q Consensus 471 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~-------~~~~i~~~-~~~~g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~ 540 (658)
.+++.+.|.++++++++.+. +++..-. . +|..+... ....|++|+|+|||+++|.+| |++|++|||++
T Consensus 36 ~~~~~~~r~~k~~~l~~~g~-~yp~~~~~t~~~~~~~~~~~~~~~~~~~~~g~~V~v~GwV~~~R~~G-k~~Fi~LrD~s 113 (529)
T 4ex5_A 36 ENQIVAERRDKLRALRDQGI-AYPNDFQPTHHAADLQTAYADADKEALEAKSLEVAIAGRMMLKRVMG-KASFATVQDGS 113 (529)
T ss_dssp CHHHHHHHHHHHHHHHHTSC-SSCCCCCCCCCHHHHHHHTTTCCHHHHHHHCCEEEEEEEEEEEEEET-TEEEEEEECSS
T ss_pred hHHHHHHHHHHHHHHHHcCC-CCCCCCcCceEHHHHHHHhhccCccccccCCcEEEEEEEEEeeecCC-CeEEEEEEeCC
Confidence 34566778899999988876 7654221 1 11111100 011278999999999999998 79999999999
Q ss_pred EEEEEEEcCCc---cchHHhccCCCCcEEEEEEEEEecCCCCCCCCceEEEEEEEEEEecCCCCCCCcccCCCCChhhhc
Q psy8087 541 GFIQCVLADIL---CQTEHALLLSTESSVQFRGRIEKVPEGKSAPGGHELKVDYWEVVGLAPAGGADAILNEEALPDVQL 617 (658)
Q Consensus 541 ~~iQvv~~~~~---~~~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~El~~~~i~vls~~~~~~~~~~~~~~~~~e~r~ 617 (658)
|.||||++.+. ..++.++.|+.||+|+|+|+|.+++ +|++||.+++|+||++|.. |+|...++..++++|+
T Consensus 114 g~iQvv~~~~~~~~~~~~~~~~l~~gd~V~V~G~v~~t~-----~gelel~~~~i~vLs~a~~-plP~k~~~l~d~e~r~ 187 (529)
T 4ex5_A 114 GQIQFFVTPADVGAETYDAFKKWDLGDIVAARGVLFRTN-----KGELSVKCTQLRLLAKALR-PLPDKFHGLADQETRY 187 (529)
T ss_dssp CEEEEEECHHHHCHHHHHHHHTCCTTCEEEEEEEEEECT-----TSCEEEEEEEEEEEECCSS-CCCC------CTTHHH
T ss_pred eeEEEEEECCcCCHHHHHHHhcCCCCCEEEEEEEEEEcC-----CCcEEEEEEEEEEEecCCC-CCCccccCCcChhhhh
Confidence 99999998643 1245667899999999999998866 7899999999999999963 5666666677899999
Q ss_pred ccceeeeec-hhhHHHHHHHHHHHHHHHHHhhcCCcEEecCC
Q psy8087 618 DNRHIMIRG-ENTSRVLLMRSVLLQALRAHFADRNYTEVNIE 658 (658)
Q Consensus 618 ~~R~LdLR~-~~~~~ifr~Rs~i~~~iR~fL~~~gF~EVeTp 658 (658)
++||||||+ +.++++|++||+|+++||+||+++||+|||||
T Consensus 188 r~RyLdLr~~~~~~~~fr~Rs~i~~~iR~ff~~~gFlEVeTP 229 (529)
T 4ex5_A 188 RQRYVDLIVTPETRTTFRARTKAIASIRKFMGDADFMEVETP 229 (529)
T ss_dssp HTHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCC
T ss_pred hhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCC
Confidence 999999985 79999999999999999999999999999999
|
| >1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A | Back alignment and structure |
|---|
Probab=99.96 E-value=7.4e-29 Score=275.78 Aligned_cols=179 Identities=17% Similarity=0.161 Sum_probs=140.8
Q ss_pred hhHHHHHHHHhHHHHHhcccCCCCCCCccceeecccC----C-------ccCCcEEEEEEEEEeeecCCCceEEEEEEeC
Q psy8087 471 EEEDAEKREKNLEEAKKIVLKEDPSLPPAVRIKIKDG----E-------KYRDKRVTIFGWVHRLRRQGKGLMFVTLRDG 539 (658)
Q Consensus 471 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~----~-------~~~g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~ 539 (658)
..++.+.|.+++++++ .++.+++.... ....+.+. . ...|++|+|+|||+++|.+| |++|++|||+
T Consensus 14 ~~~~~~~r~~k~~~l~-~g~~~y~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~Gwv~~~R~~g-k~~F~~LrD~ 90 (504)
T 1e1o_A 14 FNDELRNRREKLAALR-QQGVAFPNDFR-RDHTSDQLHEEFDAKDNQELESLNIEVSVAGRMMTRRIMG-KASFVTLQDV 90 (504)
T ss_dssp HHHHHHHHHHHHHHHH-HHSCSSCCCCC-CSCCHHHHHHHHTTCCHHHHHHHCCEEEEEEEEEEEEEET-TEEEEEEEET
T ss_pred hhHHHHHHHHHHHHHH-hCCCCCCCCCc-CceEHHHHHHHhhccCccccccCCCEEEEEEEEEEEecCC-CcEEEEEEEC
Confidence 3456677888898888 77777764221 11111111 0 01288999999999999998 7999999999
Q ss_pred CEEEEEEEcCCc---cchH-HhccCCCCcEEEEEEEEEecCCCCCCCCceEEEEEEEEEEecCCCCCCCcccCCCCChhh
Q psy8087 540 SGFIQCVLADIL---CQTE-HALLLSTESSVQFRGRIEKVPEGKSAPGGHELKVDYWEVVGLAPAGGADAILNEEALPDV 615 (658)
Q Consensus 540 ~~~iQvv~~~~~---~~~~-~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~El~~~~i~vls~~~~~~~~~~~~~~~~~e~ 615 (658)
+|.||||++.+. ..++ .+..|+.||+|.|+|+|.+++ +|++||.+++|+||++|.. ++|...++..++++
T Consensus 91 sg~iQvv~~~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~-----~ge~ei~~~~i~vl~~a~~-plP~k~~~~~~~e~ 164 (504)
T 1e1o_A 91 GGRIQLYVARDSLPEGVYNDQFKKWDLGDIIGARGTLFKTQ-----TGELSIHCTELRLLTKALR-PLPDKFHGLQDQEV 164 (504)
T ss_dssp TEEEEEEEETTTSSTTHHHHTGGGCCTTCEEEEEEEEEECT-----TCCEEEEEEEEEEEECCSS-CCCC-------TTH
T ss_pred CeeEEEEEECCcCCHHHHHHHHhcCCCCCEEEEEEEEEecC-----CceEEEEEEEEEEecccCC-CCCccccCCcChhh
Confidence 999999998652 2244 567899999999999998876 6899999999999999963 45544445567899
Q ss_pred hcccceeeee-chhhHHHHHHHHHHHHHHHHHhhcCCcEEecCC
Q psy8087 616 QLDNRHIMIR-GENTSRVLLMRSVLLQALRAHFADRNYTEVNIE 658 (658)
Q Consensus 616 r~~~R~LdLR-~~~~~~ifr~Rs~i~~~iR~fL~~~gF~EVeTp 658 (658)
|+++|||||| ++.++++|++||+|+++||+||+++||+|||||
T Consensus 165 r~r~RyLdL~~~~~~~~~~r~Rs~i~~~iR~f~~~~gFlEVeTP 208 (504)
T 1e1o_A 165 RYRQRYLDLIANDKSRQTFVVRSKILAAIRQFMVARGFMEVETP 208 (504)
T ss_dssp HHHTHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTTTCEECCCC
T ss_pred hhhccchhhhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECC
Confidence 9999999997 589999999999999999999999999999999
|
| >1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-28 Score=276.09 Aligned_cols=150 Identities=25% Similarity=0.354 Sum_probs=130.3
Q ss_pred CccCCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCC--CCCCCCce
Q psy8087 508 EKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPE--GKSAPGGH 585 (658)
Q Consensus 508 ~~~~g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~--~~~~~g~~ 585 (658)
..+.|++|+|+|||+++|++| |++|++|||++|.||||++.+...++.+..|+.||+|.|+|+|..++. ++.++|++
T Consensus 12 ~~~~g~~V~l~GwV~~~R~~G-~~~Fi~LrD~~g~iQvv~~~~~~~~~~~~~l~~e~~V~V~G~v~~~~~~~~~~~~ge~ 90 (580)
T 1l0w_A 12 ETHVGEEVVLEGWVNRRRDLG-GLIFLDLRDREGLVQLVAHPASPAYATAERVRPEWVVRAKGLVRLRPEPNPRLATGRV 90 (580)
T ss_dssp GGGTTCEEEEEEEEEEEEECS-SCEEEEEEETTEEEEEEECTTSTTHHHHTTCCTTCEEEEEEEEEECSSCCTTSTTTTE
T ss_pred HHhCCCEEEEEEEEEEEecCC-CeEEEEEEECCeeEEEEEeCChhHHHHHhcCCCCcEEEEEEEEEcCCCcCccCCCccE
Confidence 356799999999999999998 799999999999999999865434566788999999999999999863 24468999
Q ss_pred EEEEEEEEEEecCCCCCCCccc------CCCCChhhhcccceeeeechhhHHHHHHHHHHHHHHHHHhhcCCcEEecCC
Q psy8087 586 ELKVDYWEVVGLAPAGGADAIL------NEEALPDVQLDNRHIMIRGENTSRVLLMRSVLLQALRAHFADRNYTEVNIE 658 (658)
Q Consensus 586 El~~~~i~vls~~~~~~~~~~~------~~~~~~e~r~~~R~LdLR~~~~~~ifr~Rs~i~~~iR~fL~~~gF~EVeTp 658 (658)
||.|++++|||+|...|.+... +..++.++|+++||||||++.++++|++||+|+++||+||+++||+|||||
T Consensus 91 Ei~~~~i~vl~~a~~lP~~i~~~~~~~~~~~~~~e~Rl~~RyLdLR~~~~~~~l~~Rs~i~~~iR~fl~~~gF~EVeTP 169 (580)
T 1l0w_A 91 EVELSALEVLAEAKTPPFPVDAGWRGEEEKEASEELRLKYRYLDLRRRRMQENLRLRHRVIKAIWDFLDREGFVQVETP 169 (580)
T ss_dssp EEEEEEEEEEECCCCCSSCCSSGGGTCCCCCCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCC
T ss_pred EEEEeEEEEeccCcCCCCCcchhccccccccCCHHHhhhhhHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCcEEEeCC
Confidence 9999999999999632222211 346789999999999999999999999999999999999999999999999
|
| >3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-28 Score=273.37 Aligned_cols=179 Identities=17% Similarity=0.179 Sum_probs=143.4
Q ss_pred hHHHHHHHHhHHHHHhcccCCCCCCCccceeecccC----C-------ccCCcEEEEEEEEEeeecCCCceEEEEEEeCC
Q psy8087 472 EEDAEKREKNLEEAKKIVLKEDPSLPPAVRIKIKDG----E-------KYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGS 540 (658)
Q Consensus 472 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~----~-------~~~g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~ 540 (658)
.++.+.|.++++++++.++.+++.... ....+.+. . ...|++|+|+|||+++|.+| |++|++|||++
T Consensus 6 ~~~~~~r~~k~~~l~~~g~~~y~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~Gwv~~~R~~g-k~~F~~LrD~s 83 (493)
T 3a74_A 6 NDQLRVRREKLKKIEELGVDPFGKRFE-RTHKAEELFELYGDLSKEELEEQQIEVAVAGRIMTKRGMG-KAGFAHIQDVT 83 (493)
T ss_dssp THHHHHHHHHHHHHHHTTCCTTCCCCC-CSCCHHHHHHHHTTSCHHHHHHHCCEEEEEEEEEEEEEET-TEEEEEEEETT
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCCc-CceehHHHHHhhccccchhhccCCCEEEEEEEEEEEecCC-CcEEEEEEECC
Confidence 356677888999999998888764221 11111111 0 01288999999999999998 79999999999
Q ss_pred EEEEEEEcCCc---cchHHhccCCCCcEEEEEEEEEecCCCCCCCCceEEEEEEEEEEecCCCCCCCcccCCCCChhhhc
Q psy8087 541 GFIQCVLADIL---CQTEHALLLSTESSVQFRGRIEKVPEGKSAPGGHELKVDYWEVVGLAPAGGADAILNEEALPDVQL 617 (658)
Q Consensus 541 ~~iQvv~~~~~---~~~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~El~~~~i~vls~~~~~~~~~~~~~~~~~e~r~ 617 (658)
|.||||++.+. ..++.+..|+.||+|.|+|+|.+++ +|++||.+++++||++|.. ++|...++..++++|+
T Consensus 84 g~iQvv~~~~~~~~~~~~~~~~l~~g~~v~V~G~v~~~~-----~ge~ei~~~~i~vl~~~~~-plP~k~~~~~~~e~r~ 157 (493)
T 3a74_A 84 GQIQIYVRQDDVGEQQYELFKISDLGDIVGVRGTMFKTK-----VGELSIKVSSYEFLTKALR-PLPEKYHGLKDIEQRY 157 (493)
T ss_dssp EEEEEEEEHHHHHHHHHHHHHHCCTTCEEEEEEEEEECT-----TCCEEEEEEEEEEEECCSS-CCCCC-----CHHHHH
T ss_pred EeEEEEEECCcCCHHHHHHHhcCCCCCEEEEEEEEEeCC-----CCcEEEEEEEEEEcccccC-CCCccccCCCCHhhhh
Confidence 99999997642 1245567899999999999998876 6899999999999999963 4554444567899999
Q ss_pred ccceeeee-chhhHHHHHHHHHHHHHHHHHhhcCCcEEecCC
Q psy8087 618 DNRHIMIR-GENTSRVLLMRSVLLQALRAHFADRNYTEVNIE 658 (658)
Q Consensus 618 ~~R~LdLR-~~~~~~ifr~Rs~i~~~iR~fL~~~gF~EVeTp 658 (658)
++|||||| ++.++++|++||+|+++||+||+++||+||+||
T Consensus 158 r~RyldL~~~~~~~~~~r~Rs~i~~~iR~ff~~~gF~EVeTP 199 (493)
T 3a74_A 158 RQRYLDLIMNPESKKTFITRSLIIQSMRRYLDSHGYLEVETP 199 (493)
T ss_dssp HTHHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHTTCEECCCC
T ss_pred hcchhhhhcCHHHHHHHHHHHHHHHHHHHHHHhCCeEEEECC
Confidence 99999997 589999999999999999999999999999999
|
| >1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.7e-28 Score=275.13 Aligned_cols=148 Identities=22% Similarity=0.315 Sum_probs=131.2
Q ss_pred CccCCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCcc-chHHhccCCCCcEEEEEEEEEecCCC----CCCC
Q psy8087 508 EKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILC-QTEHALLLSTESSVQFRGRIEKVPEG----KSAP 582 (658)
Q Consensus 508 ~~~~g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~~-~~~~~~~L~~gs~V~V~G~v~~~~~~----~~~~ 582 (658)
..+.|++|+|+|||+++|++| +++|++|||++|.||||++.+.. .++.+..|+.||+|.|+|+|..++++ +.++
T Consensus 11 ~~~~g~~V~l~GwV~~~R~~G-~~~Fi~LrD~~g~iQvv~~~~~~~~~~~~~~l~~e~~V~V~G~v~~~~~~~~n~~~~~ 89 (585)
T 1c0a_A 11 LSHVGQQVTLCGWVNRRRDLG-SLIFIDMRDREGIVQVFFDPDRADALKLASELRNEFCIQVTGTVRARDEKNINRDMAT 89 (585)
T ss_dssp GGGTTCEEEEEEEEEEEEECS-SCEEEEEEETTEEEEEEECGGGHHHHHHHTTCCTTCEEEEEEEEEECCTTTCCTTSTT
T ss_pred HHhCCCEEEEEEEEEEEecCC-CcEEEEEEECCeeEEEEEeCCchHHHHHHhcCCCCCEEEEEeEEEccCcccccccCCC
Confidence 356799999999999999998 79999999999999999986532 24567789999999999999998753 3468
Q ss_pred CceEEEEEEEEEEecCCCCCCCcccCCCCChhhhcccceeeeechhhHHHHHHHHHHHHHHHHHhhcCCcEEecCC
Q psy8087 583 GGHELKVDYWEVVGLAPAGGADAILNEEALPDVQLDNRHIMIRGENTSRVLLMRSVLLQALRAHFADRNYTEVNIE 658 (658)
Q Consensus 583 g~~El~~~~i~vls~~~~~~~~~~~~~~~~~e~r~~~R~LdLR~~~~~~ifr~Rs~i~~~iR~fL~~~gF~EVeTp 658 (658)
|++||.+++++|||+|. ++|....+.++.++|+++||||||++.++++|++||+|+++||+||+++||+|||||
T Consensus 90 geiEl~~~~i~vl~~a~--~lP~~~~~~~~~e~Rl~~R~LdLR~~~~~~~l~~Rs~i~~~iR~fl~~~gFlEVeTP 163 (585)
T 1c0a_A 90 GEIEVLASSLTIINRAD--VLPLDSNHVNTEEARLKYRYLDLRRPEMAQRLKTRAKITSLVRRFMDDHGFLDIETP 163 (585)
T ss_dssp TTEEEEEEEEEEEECCC--SCSSCTTSCCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCC
T ss_pred ccEEEEEeEEEEEeccC--CCCCCccccCCHhHhhhchHhhhcCHHHHHHHHHHHHHHHHHHHHHHhCCcEEEeCC
Confidence 99999999999999996 245445557899999999999999999999999999999999999999999999999
|
| >3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.6e-28 Score=269.08 Aligned_cols=160 Identities=21% Similarity=0.269 Sum_probs=136.4
Q ss_pred CccceeecccC-CccCCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCc---cc-hHHhccCCCCcEEEEEEE
Q psy8087 497 PPAVRIKIKDG-EKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADIL---CQ-TEHALLLSTESSVQFRGR 571 (658)
Q Consensus 497 ~~~~~~~i~~~-~~~~g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~---~~-~~~~~~L~~gs~V~V~G~ 571 (658)
+..+|+++.++ ..+.|++|+|+|||+++|.+| |++|++|||+++.||||++.+. .. ++++..|+.||+|.|+|+
T Consensus 46 ~~~~~~~i~~l~~~~~g~~V~v~Gwv~~~R~~g-kl~Fi~LrD~~g~iQ~v~~~~~~~~~~~~~~~~~l~~es~V~V~G~ 124 (548)
T 3i7f_A 46 TGLKYTEIEELVPAMAEKTVTIRARVQAVRGKG-NMVFLFLRKGIYTCQALVMKSETISKEFVQFCQKISAESICDITGI 124 (548)
T ss_dssp CCCCBCCGGGCSGGGTTCEEEEEEEEEEEEECS-SEEEEEEEETTEEEEEEEECSSSSCHHHHHHHHTCCTTEEEEEEEE
T ss_pred CCCceEEhhhcchhcCCCEEEEEEEEEEEecCC-CeEEEEEEECCeeEEEEEECCCccCHHHHHHHhCCCCCCEEEEEEE
Confidence 34577777776 477899999999999999999 8999999999999999998632 12 356788999999999999
Q ss_pred EEecCCC-CC-CCCceEEEEEEEEEEecCCCCCCCcccC-----------------------------------------
Q psy8087 572 IEKVPEG-KS-APGGHELKVDYWEVVGLAPAGGADAILN----------------------------------------- 608 (658)
Q Consensus 572 v~~~~~~-~~-~~g~~El~~~~i~vls~~~~~~~~~~~~----------------------------------------- 608 (658)
|.+++.+ ++ ++|++||++++|+|||+|+. ++|....
T Consensus 125 v~~~~~~~~~~~~~~~El~~~~i~vls~a~~-~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (548)
T 3i7f_A 125 VKAVEKPIEKATQQDVEIHVTSIAVVSLAEY-PLPMQIEDLTFPSSVFKKQEEDIAKVDEKIAKFLKDNEGKDLTKRPLK 203 (548)
T ss_dssp EEECSSCCTTSSSCSEEEEEEEEEEEECCCB-SCSSCSGGGSCCHHHHHHHHHHTTCC----------------------
T ss_pred EEeCCcccccCCCCcEEEEEeEEEEEecCCC-CCCCCchhcccccccccccccccccccccccccccccccccccccccc
Confidence 9998753 22 36899999999999999963 3443311
Q ss_pred ----------------CCCChhhhcccceeeeechhhHHHHHHHHHHHHHHHHHhhcCCcEEecCC
Q psy8087 609 ----------------EEALPDVQLDNRHIMIRGENTSRVLLMRSVLLQALRAHFADRNYTEVNIE 658 (658)
Q Consensus 609 ----------------~~~~~e~r~~~R~LdLR~~~~~~ifr~Rs~i~~~iR~fL~~~gF~EVeTp 658 (658)
..++.++|+++||||||++.++++|++||+|+++||+||+++||+|||||
T Consensus 204 ~e~~~~l~~~~~~~~~~~~~~e~rl~~R~LdLR~~~~~~~~r~Rs~i~~~iR~ff~~~gF~EVeTP 269 (548)
T 3i7f_A 204 DEYAKLLKEKASAQKYVKVSQDTRLDNRMLDLRTVTNIAIFRIQSACCGLFREFLTSQKFVEIHTP 269 (548)
T ss_dssp ---------CCCCCCCCCCCHHHHHTTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCC
T ss_pred ccccccccccccccccccCCHHHhhhchhhccCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeCC
Confidence 13578999999999999999999999999999999999999999999999
|
| >3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=5.8e-28 Score=264.55 Aligned_cols=145 Identities=23% Similarity=0.373 Sum_probs=128.7
Q ss_pred ccCCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCcc---chHHhccCCCCcEEEEEEEEEecCCCCCCCCce
Q psy8087 509 KYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILC---QTEHALLLSTESSVQFRGRIEKVPEGKSAPGGH 585 (658)
Q Consensus 509 ~~~g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~~---~~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~ 585 (658)
.+.|++|+|+|||+++|.+| |++|++|||++|.||||++++.. .++.++.|+.||+|.|+|+|.+++ .++|++
T Consensus 13 ~~~g~~V~v~Gwv~~~R~~g-~~~Fi~LrD~~g~iQ~v~~~~~~~~~~~~~~~~l~~~~~V~V~G~v~~~~---~~~~~~ 88 (438)
T 3nem_A 13 ELNGQKVKVAGWVWEVKDLG-GIKFLWIRDRDGIVQITAPKKKVDPELFKLIPKLRSEDVVAVEGVVNFTP---KAKLGF 88 (438)
T ss_dssp GGTTCEEEEEEEEEEEEEET-TEEEEEEEETTEEEEEEEETTTSCHHHHHHGGGCCTTCEEEEEEEEEECT---TSTTSE
T ss_pred hcCCCEEEEEEEEEEEecCC-CeEEEEEEECCeeEEEEEeCCcCCHHHHHHHhcCCCCCEEEEEEEEEeCC---CCCCcE
Confidence 35799999999999999998 79999999999999999987542 246678899999999999999876 346899
Q ss_pred EEEEEEEEEEecCCCCCCCcccCC--CCChhhhcccceeeeechhhHHHHHHHHHHHHHHHHHhhcCCcEEecCC
Q psy8087 586 ELKVDYWEVVGLAPAGGADAILNE--EALPDVQLDNRHIMIRGENTSRVLLMRSVLLQALRAHFADRNYTEVNIE 658 (658)
Q Consensus 586 El~~~~i~vls~~~~~~~~~~~~~--~~~~e~r~~~R~LdLR~~~~~~ifr~Rs~i~~~iR~fL~~~gF~EVeTp 658 (658)
||++++++||++|.. ++|...++ .++.|+|+++||||||++.++++|++||+|+++||+||+++||+|||||
T Consensus 89 el~~~~i~vl~~~~~-~lP~~~~~~~~~~~e~r~~~R~Ldlr~~~~~~~~~~Rs~i~~~iR~f~~~~gF~EVeTP 162 (438)
T 3nem_A 89 EILPEKIVVLNRAET-PLPLDPTGKVKAELDTRLDNRFMDLRRPEVMAIFKIRSSVFKAVRDFFHENGFIEIHTP 162 (438)
T ss_dssp EEEEEEEEEEECBCS-SCSSCTTSSSCCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCC
T ss_pred EEEEEEEEEEecCCC-CCCCCccccccCCHHHHhhchHHHhcCHHHHHHHHHHHHHHHHHHHHHHHCCcEEEeCC
Confidence 999999999999963 44544443 3789999999999999999999999999999999999999999999999
|
| >1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.5e-27 Score=259.30 Aligned_cols=145 Identities=29% Similarity=0.402 Sum_probs=128.4
Q ss_pred ccCCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCCCCCCCceEEE
Q psy8087 509 KYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEGKSAPGGHELK 588 (658)
Q Consensus 509 ~~~g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~El~ 588 (658)
.+.|++|+|+|||+++|++| |++|++|||++|.||||++++...++.+..|+.||+|.|+|+|.+++. ++|++||.
T Consensus 13 ~~~~~~V~v~Gwv~~~R~~g-~~~F~~lrD~~g~iQ~v~~~~~~~~~~~~~l~~~~~v~v~G~v~~~~~---~~~~~el~ 88 (429)
T 1wyd_A 13 EYDGKEVIWAGWVHLLRDLG-GKKFIILRDKTGLGQVVVDKNSSAFGISQELTQESVIQVRGIVKADKR---APRGIELH 88 (429)
T ss_dssp GGTTCEEEEEEEEEEEEEET-TEEEEEEEETTEEEEEEECTTSTTHHHHTTCCTTCEEEEEEEEEECSS---SGGGEEEE
T ss_pred HhCCCEEEEEEEEEEEecCC-CeEEEEEEECCeeEEEEEeCChHHHHHHHhCCCCCEEEEEEEEEecCC---CCccEEEE
Confidence 46799999999999999998 699999999999999999875444566788999999999999999873 36899999
Q ss_pred EEEEEEEecCCCCCCCcccCC--CCChhhhcccceeeeechhhHHHHHHHHHHHHHHHHHhhcCCcEEecCC
Q psy8087 589 VDYWEVVGLAPAGGADAILNE--EALPDVQLDNRHIMIRGENTSRVLLMRSVLLQALRAHFADRNYTEVNIE 658 (658)
Q Consensus 589 ~~~i~vls~~~~~~~~~~~~~--~~~~e~r~~~R~LdLR~~~~~~ifr~Rs~i~~~iR~fL~~~gF~EVeTp 658 (658)
+++++|||+|+. ++|..... .++.|+|+++||||||++.++++|++||.|++++|+||.++||+||+||
T Consensus 89 ~~~~~vl~~~~~-~~P~~~~~~~~~~~e~r~~~R~Ldlr~~~~~~~~~~rs~i~~~ir~ff~~~gF~eV~TP 159 (429)
T 1wyd_A 89 AEEITLLSKAKA-PLPLDVSGKVKADIDTRLRERVLDLRRQEMQAVIKIQSLALKAFRETLYKEGFIEIFTP 159 (429)
T ss_dssp EEEEEEEECCCS-SCSSCSSSCCCCCHHHHHHTHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCC
T ss_pred EeEEEEeccCCC-CCCCCccccccCChhHhhhccceeccCHHHHHHHHHHHHHHHHHHHHHhhCCCEEEECC
Confidence 999999999953 34433222 3789999999999999999999999999999999999999999999999
|
| >1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-27 Score=264.69 Aligned_cols=160 Identities=26% Similarity=0.328 Sum_probs=134.4
Q ss_pred ccceeecccCC-c-cCCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCC----cc--chHHhccCCCCcEEEEE
Q psy8087 498 PAVRIKIKDGE-K-YRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADI----LC--QTEHALLLSTESSVQFR 569 (658)
Q Consensus 498 ~~~~~~i~~~~-~-~~g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~----~~--~~~~~~~L~~gs~V~V~ 569 (658)
..+++.+.++. . +.|++|+|+|||+++|++|+.|+|++|||++|.||||++.+ .. .++.+..|+.||+|.|+
T Consensus 20 ~~~~~~~~~l~~~~~~g~~V~v~GwV~~~R~~g~~l~Fi~LrD~~g~iQvv~~~~~~~~~~~~~~~~~~~l~~e~~V~V~ 99 (487)
T 1eov_A 20 GQKRVKFVDLDEAKDSDKEVLFRARVHNTRQQGATLAFLTLRQQASLIQGLVKANKEGTISKNMVKWAGSLNLESIVLVR 99 (487)
T ss_dssp CCCCCCGGGCCTTTTTTCEEEEEEEEEEEEECSSSEEEEEEEETTEEEEEEEECCSSSSSCHHHHHHHTTCCTTCEEEEE
T ss_pred ccceeEHHHhcccccCCCEEEEEEEEEEeeccCCccEEEEEEECCccEEEEEeccccccccHHHHHHHhcCCCCCEEEEE
Confidence 34556666653 3 67999999999999999995459999999999999999764 11 23567789999999999
Q ss_pred EEEEecCCCC--CCCCceEEEEEEEEEEecCCCCCCCcccC--------------CCCChhhhcccceeeeechhhHHHH
Q psy8087 570 GRIEKVPEGK--SAPGGHELKVDYWEVVGLAPAGGADAILN--------------EEALPDVQLDNRHIMIRGENTSRVL 633 (658)
Q Consensus 570 G~v~~~~~~~--~~~g~~El~~~~i~vls~~~~~~~~~~~~--------------~~~~~e~r~~~R~LdLR~~~~~~if 633 (658)
|+|.+++.++ .++|++||.+++++|||+|.. ++|.... ..++.|+|+++||||||++.++++|
T Consensus 100 G~v~~~~~~~~~~~~g~~El~~~~i~vl~~a~~-~lP~~~~~~~~~~~~~~~~~~~~~~~e~r~~~R~LdLr~~~~~~~~ 178 (487)
T 1eov_A 100 GIVKKVDEPIKSATVQNLEIHITKIYTISETPE-ALPILLEDASRSEAEAEAAGLPVVNLDTRLDYRVIDLRTVTNQAIF 178 (487)
T ss_dssp EEEEECSSCCTTSSEEEEEEEEEEEEEEECCCS-SCSSCHHHHTSCHHHHHHTTCCCCCHHHHHHTHHHHTTSHHHHHHH
T ss_pred EEEEeCCCCCcCCCCCcEEEEEEEEEEeecccc-cCCcchhhcccccccccccccccCChhhhhhcceeecCCHHHHHHH
Confidence 9999988542 346899999999999999963 3443221 1368899999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCcEEecCC
Q psy8087 634 LMRSVLLQALRAHFADRNYTEVNIE 658 (658)
Q Consensus 634 r~Rs~i~~~iR~fL~~~gF~EVeTp 658 (658)
++||.|++++|+||+++||+||+||
T Consensus 179 ~~rs~i~~~ir~~~~~~gF~EV~TP 203 (487)
T 1eov_A 179 RIQAGVCELFREYLATKKFTEVHTP 203 (487)
T ss_dssp HHHHHHHHHHHHHHHHTTCEECCCC
T ss_pred HHHHHHHHHHHHHHHhCCcEEEeCC
Confidence 9999999999999999999999999
|
| >1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-26 Score=252.61 Aligned_cols=142 Identities=29% Similarity=0.462 Sum_probs=115.7
Q ss_pred cccCCccCCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCccchHHhccCC-CCcEEEEEEEEEecCCCCCCC
Q psy8087 504 IKDGEKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLS-TESSVQFRGRIEKVPEGKSAP 582 (658)
Q Consensus 504 i~~~~~~~g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~~~~~~~~~L~-~gs~V~V~G~v~~~~~~~~~~ 582 (658)
+.++..+.|++|+|+|||+++|.+| |++|++|||++|.||||+++ ..|+ .||+|.|+|+|.+++. ++
T Consensus 5 ~~~l~~~~~~~V~v~Gwv~~~R~~g-~~~F~~lrD~~g~iQ~v~~~--------~~l~~~~~~v~v~G~v~~~~~---~~ 72 (422)
T 1n9w_A 5 VRDLKAHVGQEVELLGFLHWRRDLG-RIQFLLLRDRSGVVQVVTGG--------LKLPLPESALRVRGLVVENAK---AP 72 (422)
T ss_dssp GGGGGGCTTSEEEEEEEEEEEEECS-SEEEEEEEETTEEEEEEEES--------CCCCCTTCEEEEEEEEEECTT---ST
T ss_pred HHHHHhcCCCEEEEEEEEEEEecCC-CeEEEEEEECCEEEEEEEEc--------cccCCCCCEEEEEEEEEecCC---CC
Confidence 4443356799999999999999998 79999999999999999975 4699 9999999999999873 36
Q ss_pred CceEEEEEEEEEEecCCCCCCCcccC---CCCChhhhcccceeeeechhhHHHHHHHHHHHHHHHHHhhcCCcEEecCC
Q psy8087 583 GGHELKVDYWEVVGLAPAGGADAILN---EEALPDVQLDNRHIMIRGENTSRVLLMRSVLLQALRAHFADRNYTEVNIE 658 (658)
Q Consensus 583 g~~El~~~~i~vls~~~~~~~~~~~~---~~~~~e~r~~~R~LdLR~~~~~~ifr~Rs~i~~~iR~fL~~~gF~EVeTp 658 (658)
|++||.++++++|++|.. ++|.... ..++.|+|+++||||||++.++++|++||.|++++|+||.++||+||+||
T Consensus 73 ~~~el~~~~~~vl~~~~~-~~P~~~~~~~~~~~~e~r~~~R~Ldlr~~~~~~~~~~rs~i~~~ir~~f~~~gF~EV~TP 150 (422)
T 1n9w_A 73 GGLEVQAKEVEVLSPALE-PTPVEIPKEEWRANPDTLLEYRYVTLRGEKARAPLKVQAALVRGFRRYLDRQDFTEIFTP 150 (422)
T ss_dssp TSEEEEEEEEEEEECCCS-CCC-----------------CHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCC
T ss_pred ccEEEEEeEEEEeccCCc-CCCCCccccccCCCHHHHhhhhHHhhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECC
Confidence 899999999999999953 3443222 23789999999999999999999999999999999999999999999999
|
| >1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-26 Score=254.09 Aligned_cols=144 Identities=31% Similarity=0.449 Sum_probs=126.5
Q ss_pred ccCCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCc---cchHHhccCCCCcEEEEEEEEEecCCCCCCCCce
Q psy8087 509 KYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADIL---CQTEHALLLSTESSVQFRGRIEKVPEGKSAPGGH 585 (658)
Q Consensus 509 ~~~g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~---~~~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~ 585 (658)
.+.|++|+|+|||+++|.+| |++|++|||++|.||||++++. ..++.+..|+.||+|.|+|+|.+++. ++|++
T Consensus 13 ~~~~~~V~v~G~v~~~R~~g-~~~F~~lrD~~g~iQ~v~~~~~~~~~~~~~~~~l~~~~~v~v~G~v~~~~~---~~~~~ 88 (434)
T 1x54_A 13 ELDGKKVRLAGWVYTNMRVG-KKIFLWIRDSTGIVQAVVAKNVVGEETFEKAKKLGRESSVIVEGIVKADER---APGGA 88 (434)
T ss_dssp GGTTCEEEEEEEEEEEEEET-TEEEEEEEETTEEEEEEECHHHHCHHHHHHHHTCCTTCEEEEEEEEEECTT---SGGGE
T ss_pred HhCCCEEEEEEEEEEEecCC-CeEEEEEEECCEEEEEEEECCcCCHHHHHHHhcCCCCCEEEEEEEEEecCC---CCccE
Confidence 56799999999999999998 6999999999999999997532 22456678999999999999998873 36899
Q ss_pred EEEEEEEEEEecCCCCCCCcc-cCCCCChhhhcccceeeeechhhHHHHHHHHHHHHHHHHHhhcCCcEEecCC
Q psy8087 586 ELKVDYWEVVGLAPAGGADAI-LNEEALPDVQLDNRHIMIRGENTSRVLLMRSVLLQALRAHFADRNYTEVNIE 658 (658)
Q Consensus 586 El~~~~i~vls~~~~~~~~~~-~~~~~~~e~r~~~R~LdLR~~~~~~ifr~Rs~i~~~iR~fL~~~gF~EVeTp 658 (658)
||.++++++|++| .++|.. ....++.|+|+++||||||++.++++|++||.|++.+|+||.++||+||+||
T Consensus 89 el~~~~~~vl~~~--~~~P~~~~~~~~~~e~r~~~R~Ldlr~~~~~~~~~~rs~i~~~ir~~f~~~gF~eVeTP 160 (434)
T 1x54_A 89 EVHVEKLEVIQAV--SEFPIPENPEQASPELLLDYRHLHIRTPKASAIMKVKETLIMAAREWLLKDGWHEVFPP 160 (434)
T ss_dssp EEEEEEEEEEECC--SCCSSCSSGGGSCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCC
T ss_pred EEEEeEEEEeecC--CCCCCcccccCCCHHHhhhceeeeecCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCc
Confidence 9999999999999 234430 1235789999999999999999999999999999999999999999999999
|
| >4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=2e-25 Score=251.66 Aligned_cols=145 Identities=21% Similarity=0.318 Sum_probs=125.2
Q ss_pred CccCCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCcc---chHHhccCCCCcEEEEEEEEEecCCC----CC
Q psy8087 508 EKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILC---QTEHALLLSTESSVQFRGRIEKVPEG----KS 580 (658)
Q Consensus 508 ~~~~g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~~---~~~~~~~L~~gs~V~V~G~v~~~~~~----~~ 580 (658)
..+.|++|+|+|||+++|.+ +|++|||++|.||||++.+.. .++.+..|+.||+|.|+|+|..++++ +.
T Consensus 20 ~~~~g~~V~l~GwV~~~R~~----~Fi~LrD~~g~iQvv~~~~~~~~~~~~~~~~l~~e~~V~V~G~v~~~~~~~~n~~~ 95 (617)
T 4ah6_A 20 SSHLGQEVTLCGWIQYRRQN----TFLVLRDFDGLVQVIIPQDESAASVKKILCEAPVESVVQVSGTVISRPAGQENPKM 95 (617)
T ss_dssp GGGTTCEEEEEEEECCCCTT----TEEEEECSSCEEEEECCCSSSSHHHHHHHHHCCSSCEEEEEEEEEECSTTCCCTTS
T ss_pred HHhCCCEEEEEEEeeeecCe----EEEEEEeCCcCEEEEEeCCcCcHHHHHHHhcCCCCCEEEEEEEEEeCCccccCccC
Confidence 45679999999999999964 399999999999999987542 23667789999999999999987754 35
Q ss_pred CCCceEEEEEEEEEEecCCCCCCCcccC--CCCChhhhcccceeeeechhhHHHHHHHHHHHHHHHHHhh-cCCcEEecC
Q psy8087 581 APGGHELKVDYWEVVGLAPAGGADAILN--EEALPDVQLDNRHIMIRGENTSRVLLMRSVLLQALRAHFA-DRNYTEVNI 657 (658)
Q Consensus 581 ~~g~~El~~~~i~vls~~~~~~~~~~~~--~~~~~e~r~~~R~LdLR~~~~~~ifr~Rs~i~~~iR~fL~-~~gF~EVeT 657 (658)
++|++||.+++++||++|. ++|.... ...+.++|+++||||||++.++++|++||+|+++||+||. ++||+||||
T Consensus 96 ~tgeiEl~~~~i~vL~~a~--~lP~~~~~~~~~~ee~Rl~~R~LdLR~~~~~~~lr~Rs~i~~~iR~f~~~~~gF~EVeT 173 (617)
T 4ah6_A 96 PTGEIEIKVKTAELLNACK--KLPFEIKNFVKKTEALRLQYRYLDLRSFQMQYNLRLRSQMVMKMREYLCNLHGFVDIET 173 (617)
T ss_dssp TTTTEEEEEEEEEEEECBC--CCSSCTTTTCCSCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHTTSCCEECCC
T ss_pred CCCcEEEEEeEEEEeecCC--CCCcccccccccChhhhccceeeeecchHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeC
Confidence 6799999999999999996 3444332 3457899999999999999999999999999999999995 799999999
Q ss_pred C
Q psy8087 658 E 658 (658)
Q Consensus 658 p 658 (658)
|
T Consensus 174 P 174 (617)
T 4ah6_A 174 P 174 (617)
T ss_dssp C
T ss_pred C
Confidence 9
|
| >12as_A Asparagine synthetase; ligase, nitrogen fixation; HET: AMP; 2.20A {Escherichia coli K12} SCOP: d.104.1.1 PDB: 11as_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=6.5e-21 Score=194.87 Aligned_cols=267 Identities=13% Similarity=0.105 Sum_probs=206.7
Q ss_pred CchHHHhh-----hCCcEEEcCCccccccC------CCCccceeeccC---CcceeeccCHHHHHHHhcc--cC---CcE
Q psy8087 160 GYPPEVSL-----ANGIAKVTPPTLVQTQV------EGGSTLFSLNFF---GEPAYLTQSSQLYLETCLP--AL---GDV 220 (658)
Q Consensus 160 ~~iR~fl~-----~~gF~EV~TPiL~~~~~------eG~~~~F~~~~~---~~~~~L~~Spqlylk~li~--g~---~rv 220 (658)
+.+++||. +.|+++|..|+++.... .|...|..++.. |..+-..+|--.||++++. +| +.+
T Consensus 13 ~~iK~~f~~~l~~~L~L~rVsaPlfv~~~~GlnD~LnG~ErpV~f~i~~~~~~~~eivhSLaKWKR~aL~~y~f~~geGl 92 (330)
T 12as_A 13 SFVKSHFSRQLEERLGLIEVQAPILSRVGDGTQDNLSGAEKAVQVKVKALPDAQFEVVHSLAKWKRQTLGQHDFSAGEGL 92 (330)
T ss_dssp HHHHHHHHHHHHHHHCEEECCCCSEEETTSSCSCCTTTTCCCCEECCSSSTTCCEEECSCCTTHHHHHHHHTTCCTTCEE
T ss_pred HHHHHHHHHHHHHhcCcEEecCCEEecCCCCCCCCCCCceecceEecccCCCceEEEeeeHHHHHHHHHHhCCCCCCCee
Confidence 57889998 89999999999975433 122334333333 7789999999999999886 57 999
Q ss_pred EEEeeeeecCCC-CCccCcceeeeeeeEeecCCHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCCCcceeeHH
Q psy8087 221 YCIAQSYRAENS-RTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGDLVRQMNPNFEPPARPFLRMNYA 299 (658)
Q Consensus 221 feI~~~FR~E~~-~~~rHl~EFt~lE~e~a~~d~~~~m~~~e~li~~i~~~~~~~~~~~~~~~~~~~~~~~~pf~rit~~ 299 (658)
|.-.++.|.++- .+++|.-+|+|.|||......+..|+.++++++.|+..+..........+++. ..+..+|..+|..
T Consensus 93 ytdMnaIR~dee~ld~~HS~yvDQwDWE~vi~~~~R~~~~Lk~tV~~Iy~~ik~tE~~~~~~y~l~-p~Lp~~i~fitsq 171 (330)
T 12as_A 93 YTHMKALRPDEDRLSPLHSVYVDQWDWERVMGDGERQFSTLKSTVEAIWAGIKATEAAVSEEFGLA-PFLPDQIHFVHSQ 171 (330)
T ss_dssp EEEEEEECTTCSCCCSSCCSEEEEEEEEEECCTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHSCCC-CCSCSSCEEEEHH
T ss_pred EecCcccccCcccCCCceeEEEeeeeeEEeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-cCCCCceEEEeHH
Confidence 999999997553 56799999999999999999999999999999888887765543222222211 1134688899999
Q ss_pred HHHHHHHHcCCCCCCCCCcccCCCCCCchhhhhhcccCCcEEEEeCCCCCCC--CCCccCCCCcCce---------eEEE
Q psy8087 300 DAIEYLRKHEIRKPDNTEYEFGEDIPEMPERKMTDQINRPIMLCRFPADIKS--FYMSKCPENPALT---------ESVD 368 (658)
Q Consensus 300 ea~~~l~~~g~~~~~~~~~~~g~~l~~~~e~~l~~~~~~p~fi~~~P~~~~p--fy~~~~~~~~~~~---------~~fd 368 (658)
|+.+++ + + +-...-|..+.+. ..+|||++-|..++- ++..+.|+.+.+. ...|
T Consensus 172 eL~~~Y---P----~--------lt~keRE~~i~ke-~gaVFii~IG~~L~~g~~HD~RaPDYDDW~t~~~~~~~gLNGD 235 (330)
T 12as_A 172 ELLSRY---P----D--------LDAKGRERAIAKD-LGAVFLVGIGGKLSDGHRHDVRAPDYDDWSTPSELGHAGLNGD 235 (330)
T ss_dssp HHHHHS---S----S--------SCHHHHHHHHHHH-HSEEEEECCSSCCSSSCCSSCCCTTTBCCSSBCTTSSBCSEEE
T ss_pred HHHHHc---C----C--------CChHHHHHHHHHh-hCCEEEEecCCccCCCCcCcCcCCCCCCccccccccccCccce
Confidence 998763 2 1 1112223333322 469999998865432 3455666666777 8999
Q ss_pred EEe-----CCcceeeeceeccCCHHHHHHHHHHcCCCCCCCcchHHHhhcCC-CCccceecchhHHHHHHhcccCcchhh
Q psy8087 369 VLF-----PNVGEVIGGSMRIWDPEELLAGYKREGIDPAPYYWYTDQRKYGS-TPHGGYGLGLERVLCWLLNQYHVRDKY 442 (658)
Q Consensus 369 L~~-----~G~~Ei~~G~~r~~d~~~~~~~~~~~g~~~~~~~~yl~a~~~G~-pP~gG~GiGidRL~m~l~g~~~Irdvi 442 (658)
|++ .+..||.+++.| .|++.+.++++..|..+....+|..++..|- |+|.|.|||.+||+|+|++..+|-+|.
T Consensus 236 ilvw~~vl~~a~ElSSMGIR-Vd~~~L~~QL~~~g~~er~~~~yh~~ll~g~LP~TiGGGIGQSRLcmflL~k~HIGEVQ 314 (330)
T 12as_A 236 ILVWNPVLEDAFELSSMGIR-VDADTLKHQLALTGDEDRLELEWHQALLRGEMPQTIGGGIGQSRLTMLLLQLPHIGQVQ 314 (330)
T ss_dssp EEEEETTTTEEEEEEEEEEB-CCHHHHHHHHHHHTCTTGGGSHHHHHHHTTCSCCEEEEEEEHHHHHHHHHTCSCGGGTS
T ss_pred EEEeccccCceeEEecceEE-eCHHHHHHHHHHcCCChhhccHHHHHHHcCCCCccccccccHHHHHHHHhccchhheee
Confidence 999 456799999999 9999999999999988777889999999995 999999999999999999999999997
Q ss_pred HH
Q psy8087 443 QL 444 (658)
Q Consensus 443 ~f 444 (658)
+=
T Consensus 315 ~s 316 (330)
T 12as_A 315 AG 316 (330)
T ss_dssp CC
T ss_pred cc
Confidence 64
|
| >3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A | Back alignment and structure |
|---|
Probab=99.70 E-value=3.2e-17 Score=170.65 Aligned_cols=179 Identities=22% Similarity=0.295 Sum_probs=119.5
Q ss_pred CchHHHhhhCCcEEEcCCccccccC---CCC-c--ccee-eccCCcceeec--cCHHHHH--HHhcccCC---cEEEEee
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV---EGG-S--TLFS-LNFFGEPAYLT--QSSQLYL--ETCLPALG---DVYCIAQ 225 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~---eG~-~--~~F~-~~~~~~~~~L~--~Spqlyl--k~li~g~~---rvfeI~~ 225 (658)
..+|++|...||.||.||.|..... .|. . +.+. .+..+.+++|| .+|.+.. ...+..-+ |+|++|+
T Consensus 78 ~~ir~~~~~~Gf~EV~tP~Le~~~l~~~~g~~~~~~m~~~~npl~e~~~LRp~l~p~l~~~~r~~~~~~~~PlrlfeiG~ 157 (288)
T 3dsq_A 78 EKLAKALHQQGFVQVVTPTIITKSALAKMTIGEDHPLFSQVFWLDGKKCLRPMLAPNLYTLWRELERLWDKPIRIFEIGT 157 (288)
T ss_dssp HHHHHHHHTTTCEECCCCSEEEHHHHHTTSSCC--CCTTTSCEEETTEEECSCSHHHHHHHHHHHTTTSCSCEEEEEEEE
T ss_pred HHHHHHHHHCCCEEEECCeeecHHHHhhcCCCcccccEEeecccccchhhhhcChHHHHHHHHHHHhCCCCCEEEEEEee
Confidence 5899999999999999999974321 111 1 1221 22334678999 4577652 22222333 8999999
Q ss_pred eeecCCCCCccCcceeeeeeeEeecCC----HHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCCCcceeeHHHH
Q psy8087 226 SYRAENSRTRRHLAEYTHVEAECAFLT----FDDLLDKLEDLICDTVDRVMATHGDLVRQMNPNFEPPARPFLRMNYADA 301 (658)
Q Consensus 226 ~FR~E~~~~~rHl~EFt~lE~e~a~~d----~~~~m~~~e~li~~i~~~~~~~~~~~~~~~~~~~~~~~~pf~rit~~ea 301 (658)
|||+|..+. .|.+||+|+|++....+ +.++..+++++++.
T Consensus 158 vFR~E~~~~-~r~~EF~qle~~i~g~~~~~~f~elkg~le~ll~~----------------------------------- 201 (288)
T 3dsq_A 158 CYRKESQGA-QHLNEFTMLNLTELGTPLEERHQRLEDMARWVLEA----------------------------------- 201 (288)
T ss_dssp EECSCCSSS-CCCSEEEEEEEEEETCCGGGHHHHHHHHHHHHHHH-----------------------------------
T ss_pred EEecCCCCC-CcCccEEEEEEEEEcCCchhhHHHHHHHHHHHHHH-----------------------------------
Confidence 999998755 79999999999997652 33343333333322
Q ss_pred HHHHHHcCCCCCCCCCcccCCCCCCchhhhhhcccCCcEEEEeCCCCCCCCCCccCCCCcCceeEEEEEeCCcceeeece
Q psy8087 302 IEYLRKHEIRKPDNTEYEFGEDIPEMPERKMTDQINRPIMLCRFPADIKSFYMSKCPENPALTESVDVLFPNVGEVIGGS 381 (658)
Q Consensus 302 ~~~l~~~g~~~~~~~~~~~g~~l~~~~e~~l~~~~~~p~fi~~~P~~~~pfy~~~~~~~~~~~~~fdL~~~G~~Ei~~G~ 381 (658)
.|++. ..|. . | +....+.++|++++|. ||++|+
T Consensus 202 ------LGl~~--------------------------~~~~-~-~------------s~e~~~~~~~l~~~~~-eig~~G 234 (288)
T 3dsq_A 202 ------AGIRE--------------------------FELV-T-E------------SSVVYGDTVDVMKGDL-ELASGA 234 (288)
T ss_dssp ------HTCCC--------------------------CEEE-E-C------------CCCSSCCCEEEEETTE-EEEEEE
T ss_pred ------cCCCC--------------------------cEEe-c-C------------CcceEEEEEEEEeCCE-EEEEEE
Confidence 12110 0000 0 1 0011244689999996 999999
Q ss_pred eccCCHHHHHHHHHHcCCCCCCCcchHHHhhcC-CCCccceecchhHHHHHHhcccCcchhhH
Q psy8087 382 MRIWDPEELLAGYKREGIDPAPYYWYTDQRKYG-STPHGGYGLGLERVLCWLLNQYHVRDKYQ 443 (658)
Q Consensus 382 ~r~~d~~~~~~~~~~~g~~~~~~~~yl~a~~~G-~pP~gG~GiGidRL~m~l~g~~~Irdvi~ 443 (658)
.+.+..+. +|| .|||+|||||+|||+|+++|.+|||++..
T Consensus 235 v~p~vl~~----------------------~~gi~~~~~gfglglerl~m~~~g~~~iR~~~~ 275 (288)
T 3dsq_A 235 MGPHFLDE----------------------KWEIFDPWVGLGFGLERLLMIREGTQHVQSMAR 275 (288)
T ss_dssp EESCTTTT----------------------TTTCCSCEEEEEEEHHHHHHHHHTCSCGGGGSS
T ss_pred ecHHHHHH----------------------hcCCCCCeEEEEECHHHHHHHHcCCchhhcCCC
Confidence 77776521 678 48999999999999999999999999853
|
| >3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.6e-17 Score=173.52 Aligned_cols=121 Identities=17% Similarity=0.143 Sum_probs=90.1
Q ss_pred EecCCCceeEEeecCCccc--------------CchHHHhhhCCcEEEcCCccccccCC------CCccce-eeccCCcc
Q psy8087 141 QLIHPSSYAIVWLGDLKQG--------------GYPPEVSLANGIAKVTPPTLVQTQVE------GGSTLF-SLNFFGEP 199 (658)
Q Consensus 141 ~l~~p~~R~l~lr~~~~~~--------------~~iR~fl~~~gF~EV~TPiL~~~~~e------G~~~~F-~~~~~~~~ 199 (658)
++++ |||++|++..++ ..+|++|.+.||.||+||+|+...+. ++...+ .+.+++..
T Consensus 54 ~l~~---r~l~~R~~~~~~i~~~g~~~~~~~i~~~ir~~l~~~Gf~EV~Tp~l~~~~~~~~~~~~~~~p~~~~~~~~~~~ 130 (290)
T 3qtc_A 54 ELES---ELLSRRKKDLQQIYAEERENYLGKLEREITRFFVDRGFLEIKSPILIPLEYIERMGIDNDTELSKQIFRVDKN 130 (290)
T ss_dssp HHHH---HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCEEECCCSEEETHHHHHTTCCTTSSGGGGCCEETTT
T ss_pred hhhh---HHHHhccchHHHHhccccccHHHHHHHHHHHHHHHCCCEEEECCceeeHHHHHhcCCCcCCchhhhheeeCCC
Confidence 5566 899999875433 48999999999999999999765331 111112 13456788
Q ss_pred eeec--cCHHHHHHHh--c---ccCCcEEEEeeeeecCCCCCccCcceeeeeeeEeecCC--HHHHHHHHHHHHH
Q psy8087 200 AYLT--QSSQLYLETC--L---PALGDVYCIAQSYRAENSRTRRHLAEYTHVEAECAFLT--FDDLLDKLEDLIC 265 (658)
Q Consensus 200 ~~L~--~Spqlylk~l--i---~g~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~a~~d--~~~~m~~~e~li~ 265 (658)
++|| +||+|+..+. + .+..|+||||+|||+|+.+ .+|++||||+|+++++.+ +.++..++++++.
T Consensus 131 ~~LR~slsp~L~~~l~~n~~~~~~p~rlfeiG~vFR~E~~~-~~~~~Ef~ql~~~~~g~~~~f~elkg~le~ll~ 204 (290)
T 3qtc_A 131 FCLRPMLTPNLYNYLRKLDRALPDPIKIFEIGPCYRKESDG-KEHLEEFTMLVFWQMGSGCTRENLESIITDFLN 204 (290)
T ss_dssp EEECSCSHHHHHHHHHHHTTTSCSSEEEEEEEEEECCCSCS-SSCCSEEEEEEEEEESTTCCHHHHHHHHHHHHH
T ss_pred eeEcccChHHHHHHHHHhhccCCCCeEEEEEcCEEecCCCC-CcCcchheEEEEEEEcCChHHHHHHHHHHHHHH
Confidence 9999 9999995543 3 2368999999999999764 489999999999999874 5555555555443
|
| >1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=2.4e-12 Score=136.95 Aligned_cols=107 Identities=15% Similarity=0.023 Sum_probs=76.3
Q ss_pred CchHHHhhhCCcEEEcCCcccccc--------CC--CC---ccceeecc-CC-----------cceeeccCHHHHHHHhc
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQ--------VE--GG---STLFSLNF-FG-----------EPAYLTQSSQLYLETCL 214 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~--------~e--G~---~~~F~~~~-~~-----------~~~~L~~Spqlylk~li 214 (658)
..||++|...||.||.+|.+.... +. .| ...|.+.. .. ....||++.--.+-+++
T Consensus 108 ~~Ir~~f~~~Gf~Ev~~p~v~~~~~nfd~L~~p~~hpar~~~dt~~l~nP~s~~~~~~~~~~~~~~vLRt~tsp~llr~l 187 (350)
T 1b7y_A 108 RELVEIFRALGYQAVEGPEVESEFFNFDALNIPEHHPARDMWDTFWLTGEGFRLEGPLGEEVEGRLLLRTHTSPMQVRYM 187 (350)
T ss_dssp HHHHHHHHTTTCEECCCCSEEEHHHHTTTTTCCSSSTTTTSSCCCBEECSSCCCBCTTSCBCCSCEEECSSSTHHHHHHH
T ss_pred HHHHHHHHHCCCEEEECcchhcchhHHHhhCCCCCCccccccccEEEcCccccccccccccccccceeeccchHHHHHHH
Confidence 589999999999999999995321 00 01 12233321 11 33456655444444555
Q ss_pred c-c-C-CcEEEEeeeeecCCCCCccCcceeeeeeeEeecC--CHHHHHHHHHHHHHHH
Q psy8087 215 P-A-L-GDVYCIAQSYRAENSRTRRHLAEYTHVEAECAFL--TFDDLLDKLEDLICDT 267 (658)
Q Consensus 215 ~-g-~-~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~a~~--d~~~~m~~~e~li~~i 267 (658)
. + . -|+||||+|||+|+.+. +|+|||+|||+++++. |+.|++..++.+++.+
T Consensus 188 ~~~~~piriFEiGrVFR~d~~d~-tH~pEF~qlegl~~g~~v~f~dLKg~le~ll~~l 244 (350)
T 1b7y_A 188 VAHTPPFRIVVPGRVFRFEQTDA-THEAVFHQLEGLVVGEGIAMAHLKGAIYELAQAL 244 (350)
T ss_dssp HHCCSSEEEEEEEEEECCCCCCS-SCCSEEEEEEEEEEETTCCHHHHHHHHHHHHHHH
T ss_pred HhcCCCeeEEEeeeEEECCCCCC-CCCChhHEEEEEEECCCCCHHHHHHHHHHHHHhh
Confidence 4 3 3 48999999999988765 7999999999999997 8999999888888655
|
| >2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=6.5e-12 Score=131.11 Aligned_cols=106 Identities=13% Similarity=0.138 Sum_probs=80.0
Q ss_pred CchHHHhhhCCcEEEcCCccccccCCCC-cccee----------eccCCcceeeccCHHHHHHHhcc-c----CCcEEEE
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQVEGG-STLFS----------LNFFGEPAYLTQSSQLYLETCLP-A----LGDVYCI 223 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~eG~-~~~F~----------~~~~~~~~~L~~Spqlylk~li~-g----~~rvfeI 223 (658)
..||++|...||.||++|.+... ..+. +..+. .-+.....+||+|.--.+..++. + -.|+|||
T Consensus 60 ~~iR~~l~~~Gf~Ev~~s~l~~~-~~nf~~l~~~~~~par~~~d~~~l~e~~vLRtsl~p~ll~~l~~N~~~~~~riFEi 138 (294)
T 2rhq_A 60 EEIEDLFLGLGYEIVDGYEVEQD-YYNFEALNLPKSHPARDMQDSFYITDEILMRTHTSPVQARTMEKRNGQGPVKIICP 138 (294)
T ss_dssp HHHHHHHHTTTCEECCCCSEEEH-HHHTGGGTCCTTCGGGCTTTSCBSSSSEEECSSSHHHHHHHHHHTTTCSCEEEEEE
T ss_pred HHHHHHHHHCCCEEEcCcceeee-hhhHHhhCCCCCccccccCCcEEEcCcceeeccCHHHHHHHHHhcCCCCCccEEEE
Confidence 58999999999999999998532 1000 11110 01222456888888888777776 5 5689999
Q ss_pred eeeeecCCCCCccCcceeeeeeeEeec--CCHHHHHHHHHHHHHHH
Q psy8087 224 AQSYRAENSRTRRHLAEYTHVEAECAF--LTFDDLLDKLEDLICDT 267 (658)
Q Consensus 224 ~~~FR~E~~~~~rHl~EFt~lE~e~a~--~d~~~~m~~~e~li~~i 267 (658)
|+|||+++.+. +|+|||+|||+++++ .|+.+++..+|.|+..+
T Consensus 139 G~Vfr~d~~d~-~h~~Ef~~Le~~~~g~~~df~dlKg~le~ll~~l 183 (294)
T 2rhq_A 139 GKVYRRDSDDA-THSHQFTQIEGLVVDKNIKMSDLKGTLELVAKKL 183 (294)
T ss_dssp EEEECCCCCBT-TBCSEEEEEEEEEEESSCCHHHHHHHHHHHHHHH
T ss_pred cCEEecCCCCC-CCCChhhEEEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 99999987654 799999999999999 58999999998888755
|
| >3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.00 E-value=8.2e-10 Score=116.14 Aligned_cols=106 Identities=14% Similarity=0.136 Sum_probs=71.6
Q ss_pred CchHHHhhhCCcEEEcCCccccccC--------CCC-cc-ceeeccCCcceeecc--CHHHHHHHhcccC--CcEEEEee
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV--------EGG-ST-LFSLNFFGEPAYLTQ--SSQLYLETCLPAL--GDVYCIAQ 225 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~--------eG~-~~-~F~~~~~~~~~~L~~--Spqlylk~li~g~--~rvfeI~~ 225 (658)
..||++|...||.|+.+|.+..... +.. +. .-.+-|.+....||+ ||.+ ++.+..+- -|+|++|+
T Consensus 114 ~~Ir~if~~~Gf~ev~~~~ve~~~~nFd~Ln~p~dhpaR~~~dt~~i~e~~vLRThtsp~~-lr~l~~~~~pirifeiGr 192 (327)
T 3pco_A 114 DRIESFFGELGFTVATGPEIEDDYHNFDALNIPGHHPARADHDTFWFDTTRLLRTQTSGVQ-IRTMKAQQPPIRIIAPGR 192 (327)
T ss_dssp HHHHHHHHTTTCBCCCCCSEECTCCCCCTTTCCSSSHHHHHTTCCBSSSSCEECSCTHHHH-HHHHTTCCSSCCBCCEEC
T ss_pred HHHHHHHHHCCCeEEECCCccCCHHHHHhhCCCCCChhhcccccEEeCCCceecccCCHHH-HHHHHhCCCCeeEEeecc
Confidence 4899999999999999999843211 111 11 000112234456664 4554 33333343 48999999
Q ss_pred eeecCCCCCccCcceeeeeeeEeecC--CHHHHHHHHHHHHHHHH
Q psy8087 226 SYRAENSRTRRHLAEYTHVEAECAFL--TFDDLLDKLEDLICDTV 268 (658)
Q Consensus 226 ~FR~E~~~~~rHl~EFt~lE~e~a~~--d~~~~m~~~e~li~~i~ 268 (658)
|||++ .+ .+|+|+|+|+|...... |+.++...++.+++.++
T Consensus 193 VyR~d-~d-~th~p~fhqlegl~v~~~v~f~dLKg~Le~~l~~lf 235 (327)
T 3pco_A 193 VYRND-YD-QTHTPMFHQMEGLIVDTNISFTNLKGTLHDFLRNFF 235 (327)
T ss_dssp CBCSC-CB-TTBCSBCCEEEEEEEETTCCHHHHHHHHHHHHHHHH
T ss_pred EEecC-CC-cccCCcccEEEEEEECCCCCHHHHHHHHHHHHHHHh
Confidence 99998 44 58999999999877643 78888888888887664
|
| >3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.80 E-value=3.7e-08 Score=108.83 Aligned_cols=47 Identities=26% Similarity=0.428 Sum_probs=38.2
Q ss_pred CcEEEEeeeeecCCCCCccCcceeeeeeeEeecC--CHHHHHHHHHHHHH
Q psy8087 218 GDVYCIAQSYRAENSRTRRHLAEYTHVEAECAFL--TFDDLLDKLEDLIC 265 (658)
Q Consensus 218 ~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~a~~--d~~~~m~~~e~li~ 265 (658)
-|+|+||+|||+|..+. +|+|||+|+|...... |+.+++.+++.++.
T Consensus 348 iriFeiGrVFR~d~~Da-tHlpeFhQlegl~~~~~v~f~dLKg~Le~~l~ 396 (508)
T 3l4g_A 348 VKYFSIDRVFRNETLDA-THLAEFHQIEGVVADHGLTLGHLMGVLREFFT 396 (508)
T ss_dssp EEEEEEEEEECCSCCCS-SSCSEEEEEEEEEEEESCCHHHHHHHHHHHHH
T ss_pred ceEEEEccEEecCCCCC-CcCCeEEEEEEEEECCCCCHHHHHHHHHHHHH
Confidence 37999999999998765 8999999999987643 67777777666554
|
| >3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=2.3e-09 Score=111.63 Aligned_cols=85 Identities=18% Similarity=0.210 Sum_probs=62.2
Q ss_pred EEEEecCCCCCCCCceEEEEEEEEEEecCCCCCCCcccCCCCChhhhcccceeeeechhhHHHHHH-----HHHHHHHHH
Q psy8087 570 GRIEKVPEGKSAPGGHELKVDYWEVVGLAPAGGADAILNEEALPDVQLDNRHIMIRGENTSRVLLM-----RSVLLQALR 644 (658)
Q Consensus 570 G~v~~~~~~~~~~g~~El~~~~i~vls~~~~~~~~~~~~~~~~~e~r~~~R~LdLR~~~~~~ifr~-----Rs~i~~~iR 644 (658)
|.|-..+++++++|++||++++|++|++|.. ++|... +.. ..++++||||+|++.+.++++. ++++.+.+|
T Consensus 12 ~~~~~~~~~~~~~~~~ei~~~~~~vl~~a~~-~~P~~~-~~~--~~~l~~r~l~~R~~~~~~i~~~g~~~~~~~i~~~ir 87 (290)
T 3qtc_A 12 GLVPRGSHGASAPALTKSQTDRLEVLLNPKD-EISLNS-GKP--FRELESELLSRRKKDLQQIYAEERENYLGKLEREIT 87 (290)
T ss_dssp ------------CCCCHHHHHHHHHHCCTTC-C----C-CSC--HHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred CcccCCccccCCCceEEEEhhhhhhhccCCC-CCCCCc-chh--hhhhhhHHHHhccchHHHHhccccccHHHHHHHHHH
Confidence 3344445567889999999999999999863 334332 222 3499999999999999999999 999999999
Q ss_pred HHhhcCCcEEecCC
Q psy8087 645 AHFADRNYTEVNIE 658 (658)
Q Consensus 645 ~fL~~~gF~EVeTp 658 (658)
++|.++||.||+||
T Consensus 88 ~~l~~~Gf~EV~Tp 101 (290)
T 3qtc_A 88 RFFVDRGFLEIKSP 101 (290)
T ss_dssp HHHHHTTCEEECCC
T ss_pred HHHHHCCCEEEECC
Confidence 99999999999998
|
| >3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A* 3teg_A* 3tup_A | Back alignment and structure |
|---|
Probab=97.98 E-value=6.3e-05 Score=81.71 Aligned_cols=89 Identities=13% Similarity=0.115 Sum_probs=57.8
Q ss_pred CchHHHhhhC--------CcEEEcC-CccccccC--------CCC-cc-ceeeccCCcceeeccC--HHHHHHHhcccCC
Q psy8087 160 GYPPEVSLAN--------GIAKVTP-PTLVQTQV--------EGG-ST-LFSLNFFGEPAYLTQS--SQLYLETCLPALG 218 (658)
Q Consensus 160 ~~iR~fl~~~--------gF~EV~T-PiL~~~~~--------eG~-~~-~F~~~~~~~~~~L~~S--pqlylk~li~g~~ 218 (658)
..||++|... ||.|+.+ |.|..... ... +. .--+-|.+...-||.+ |-+..- |-.+..
T Consensus 55 ~~i~~~f~~~~~~~~g~~Gf~e~~~~~~v~s~~~NFd~L~~p~dHpaR~~~Dtfyi~~~~vLRThts~~~~~~-l~~~~~ 133 (415)
T 3cmq_A 55 ERVKEHFYKQYVGRFGTPLFSVYDNLSPVVTTWQNFDSLLIPADHPSRKKGDNYYLNRTHMLRAHTSAHQWDL-LHAGLD 133 (415)
T ss_dssp HHHHHHHHHHHHHCSSSCCCEEECCCCSEEEHHHHTGGGTCCTTCGGGCGGGSCBSSSSEEECSSGGGGHHHH-HHTTCS
T ss_pred HHHHHHHHhhhccccCCCCcEEEcCCCccccHHHHHHHhCCCCCCCcccccceEEecCCeEEcCCCcHHHHHH-HHHCCC
Confidence 5899999887 9999999 76642211 110 11 0001133455677654 444322 223567
Q ss_pred cEEEEeeeeecCCCCCccCcceeeeeeeEeec
Q psy8087 219 DVYCIAQSYRAENSRTRRHLAEYTHVEAECAF 250 (658)
Q Consensus 219 rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~a~ 250 (658)
|+|++|.|||.+..++ .|.|+|.|+|--.-|
T Consensus 134 k~~~~G~VyR~D~~da-~h~n~fhQ~egv~lf 164 (415)
T 3cmq_A 134 AFLVVGDVYRRDQIDS-QHYPIFHQLEAVRLF 164 (415)
T ss_dssp EEEEEEEEECCCCCBT-TBCSEEEEEEEEEEE
T ss_pred CEEEeeeEEeccchhh-hhhHHhcCCCcEEEE
Confidence 9999999999998876 899999999965554
|
| >2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A* | Back alignment and structure |
|---|
Probab=97.77 E-value=8e-05 Score=82.71 Aligned_cols=48 Identities=19% Similarity=0.203 Sum_probs=38.0
Q ss_pred CcEEEEeeeeecCCCCCccCcceeeeeeeEeecC--CHHHHHHHHHHHHH
Q psy8087 218 GDVYCIAQSYRAENSRTRRHLAEYTHVEAECAFL--TFDDLLDKLEDLIC 265 (658)
Q Consensus 218 ~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~a~~--d~~~~m~~~e~li~ 265 (658)
-|+||||+|||.+......|.+||+|++..+... |+.|+..+++.++.
T Consensus 206 vrLFEIG~VFr~d~~~d~th~~Ef~qLagli~G~~vdf~dLKgilE~LL~ 255 (534)
T 2du3_A 206 IKLFSIDRCFRREQGEDATRLYTYFSASCVLVDEELSVDDGKAVAEALLR 255 (534)
T ss_dssp EEEEEEEEEECCCTTCSSSCCSEEEEEEEEEECSSCCHHHHHHHHHHHHG
T ss_pred eeEEEEeeEEecCccccccccceeeEEEEEEECCCCCHHHHHHHHHHHHH
Confidence 3799999999987641237999999999999884 67777777776664
|
| >2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.76 E-value=7.4e-05 Score=81.56 Aligned_cols=106 Identities=21% Similarity=0.314 Sum_probs=70.2
Q ss_pred CchHHHhhhCCcEEEcCCcccccc----C----CCCccceeeccCCcceeeccCHHHHHHHh-----cc-c-C-CcEEEE
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQ----V----EGGSTLFSLNFFGEPAYLTQSSQLYLETC-----LP-A-L-GDVYCI 223 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~----~----eG~~~~F~~~~~~~~~~L~~Spqlylk~l-----i~-g-~-~rvfeI 223 (658)
+.+++.+.+.||.||.||+|.... + ..+.+.|++. +.++||+-..+.-+=.+ .. . + -|+|++
T Consensus 180 ~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sG~~~~f~~emy~~~--~~~l~LrPt~e~~i~~~~~~~i~s~~~LPlrl~~~ 257 (425)
T 2dq3_A 180 NFMLDLHTKKGYKEICPPHLVKPEILIGTGQLPKFEEDLYKCE--RDNLYLIPTAEVPLTNLYREEILKEENLPIYLTAY 257 (425)
T ss_dssp HHHHHHHHHTTCEEEECCSEECHHHHHHHSCTTTTGGGSCBCT--TTCCEECSSTHHHHHGGGTTEEEETTTCCEEEEEE
T ss_pred HHHHHHHHHcCCEEEECCccccHHHHHhcCCCCcChhhheEec--CCeEEEcCCCcHHHHHHHHhhccccccCCeEEEEe
Confidence 578888899999999999997543 1 1122345443 67889986666543333 22 1 2 489999
Q ss_pred eeeeecCCCCCc--c----CcceeeeeeeEeecCCHHHHHHHHHHHHHHHH
Q psy8087 224 AQSYRAENSRTR--R----HLAEYTHVEAECAFLTFDDLLDKLEDLICDTV 268 (658)
Q Consensus 224 ~~~FR~E~~~~~--r----Hl~EFt~lE~e~a~~d~~~~m~~~e~li~~i~ 268 (658)
|+|||+|..... + -.-||+|.|++. |.+-++..+..++++..+.
T Consensus 258 g~~FR~E~~~~Gr~~~Gl~R~reF~q~E~~~-f~~pe~s~~~~~e~i~~~~ 307 (425)
T 2dq3_A 258 TPCYRREAGAYGKDIRGIIRQHQFDKVELVK-IVHPDTSYDELEKLVKDAE 307 (425)
T ss_dssp EEEECCCCSCCSSSCSSSSSCSEEEEEEEEE-EECGGGHHHHHHHHHHHHH
T ss_pred cCEecCCCCcccccccCcccccceEEeeEEE-ECCHHHHHHHHHHHHHHHH
Confidence 999999975311 1 124999999976 5555666666666665443
|
| >1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A* | Back alignment and structure |
|---|
Probab=97.68 E-value=6.9e-05 Score=81.17 Aligned_cols=105 Identities=14% Similarity=0.111 Sum_probs=71.5
Q ss_pred CchHHHhhhCCcEEEcCCccccccC---CCC-----ccceeeccCCcceeeccCHHHHHHHhcc----c---C-CcEEEE
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV---EGG-----STLFSLNFFGEPAYLTQSSQLYLETCLP----A---L-GDVYCI 223 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~---eG~-----~~~F~~~~~~~~~~L~~Spqlylk~li~----g---~-~rvfeI 223 (658)
+.+|+.|...||.||.||+|..... .|. .+.|..+--|..++|+-..+...=++.. . + -|+|+|
T Consensus 38 ~~~~~~~~~~G~~ei~tP~l~~~~l~~~sG~~~~~~~em~~~d~~~~~~~LrP~~~~~~~~~~~~~~~s~~~lP~r~~~~ 117 (401)
T 1evl_A 38 VFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSSENREYCIKPMNCPGHVQIFNQGLKSYRDLPLRMAEF 117 (401)
T ss_dssp HHHHHHHHHTTCEECBCCSEEEHHHHHHHTHHHHSGGGCCEEEETTEEEEECSCSHHHHHHHHTSSCCBGGGCSEEEEEE
T ss_pred HHHHHHHHHcCCEEEECCeeccHHHHHhcCcHhhhchhhEeEecCCceEEEcCCCCHHHHHHHHhhhhhhhhCChhhccc
Confidence 5789999999999999999965420 121 2345544446789999776654433322 1 2 489999
Q ss_pred eeeeecCCCCCccC----cceeeeeeeEeecCCHHHHHHHHHHHHHH
Q psy8087 224 AQSYRAENSRTRRH----LAEYTHVEAECAFLTFDDLLDKLEDLICD 266 (658)
Q Consensus 224 ~~~FR~E~~~~~rH----l~EFt~lE~e~a~~d~~~~m~~~e~li~~ 266 (658)
|+|||+|... .+| .-||+|+|+| .|.+.+++....++++..
T Consensus 118 g~~fR~E~~~-p~~Gl~R~reF~q~d~~-~f~~~~~~~~e~~e~i~~ 162 (401)
T 1evl_A 118 GSCHRNEPSG-SLHGLMRVRGFTQDDAH-IFCTEEQIRDEVNGCIRL 162 (401)
T ss_dssp EEEECCCCGG-GCBTTTBCSEEEEEEEE-EEECGGGHHHHHHHHHHH
T ss_pred cceecCCCCc-ccccccccCcEEecceE-EeCCHHHHHHHHHHHHHH
Confidence 9999999851 122 3699999999 577766665555555543
|
| >1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00018 Score=79.80 Aligned_cols=104 Identities=14% Similarity=0.141 Sum_probs=72.3
Q ss_pred CchHHHhhhCCcEEEcCCccccccC---CCC------ccceeeccC-----CcceeeccCHH-----HHHHHhcc--cC-
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV---EGG------STLFSLNFF-----GEPAYLTQSSQ-----LYLETCLP--AL- 217 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~---eG~------~~~F~~~~~-----~~~~~L~~Spq-----lylk~li~--g~- 217 (658)
+.+|+.|...||.||.||+|.+... ++| .+.|.+..- +..++||--.+ +|.+.+.. .+
T Consensus 52 ~~~r~~~~~~G~~ei~tP~l~~~el~~~~sgh~d~f~~emy~~~d~g~~~l~~~l~LRP~~~~~i~~~~~~~~~s~r~LP 131 (477)
T 1hc7_A 52 QVLDRMFKETGHQNAYFPLFIPMSFLRKEAEHVEGFSPELAVVTHAGGEELEEPLAVRPTSETVIGYMWSKWIRSWRDLP 131 (477)
T ss_dssp HHHHHHHHHTTCEECBCCSEEESTTC---------CCTTCEEEEEESSSEEEEEEEECSCSHHHHHHHHHHHCCBGGGCC
T ss_pred HHHHHHHHHcCCEEEecCccccHHHHhhcCCcccccccceEEEECCCCccCCCeEEEcCCCcHHHHHHHHhhhhccccCC
Confidence 5789999999999999999975431 122 234543322 56899986665 45555443 23
Q ss_pred CcEEEEeeeeecCCCCCc--cCcceeeeeeeEeecCCHHHHHHHHHHHH
Q psy8087 218 GDVYCIAQSYRAENSRTR--RHLAEYTHVEAECAFLTFDDLLDKLEDLI 264 (658)
Q Consensus 218 ~rvfeI~~~FR~E~~~~~--rHl~EFt~lE~e~a~~d~~~~m~~~e~li 264 (658)
-|+|+||+|||+|..-.. |- -||+|.|+|..+.+.+++...+..++
T Consensus 132 ~rl~qig~vfR~E~~~rGl~R~-REF~q~d~~~~~~~~~~ad~E~~~~l 179 (477)
T 1hc7_A 132 QLLNQWGNVVRWEMRTRPFLRT-SEFLWQEGHTAHATREEAEEEVRRML 179 (477)
T ss_dssp EEEEEEEEEECCCSSCBTTTBC-SEEEEEEEEEEESSHHHHHHHHHHHH
T ss_pred eeeEeecCEEeCCCCCCCccee-EEEEEccEEEEeCCHHHHHHHHHHHH
Confidence 489999999999943111 22 49999999999999888776666654
|
| >2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A* | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00027 Score=77.92 Aligned_cols=104 Identities=13% Similarity=0.141 Sum_probs=67.9
Q ss_pred CchHHHhhhCCcEEEcCCccccccC---CCC-----ccceee-ccCCcceeeccCH-----HHHHHHhccc--C-CcEEE
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV---EGG-----STLFSL-NFFGEPAYLTQSS-----QLYLETCLPA--L-GDVYC 222 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~---eG~-----~~~F~~-~~~~~~~~L~~Sp-----qlylk~li~g--~-~rvfe 222 (658)
+.+|+.|...||.||.||+|..... .|. .+.|.+ +--|..++|+... .++...+... + -|+|+
T Consensus 75 ~~ir~~~~~~G~~ei~tP~l~~~el~~~sg~~d~~~~em~~~~d~~~~~~~LrPt~ee~t~~i~r~~~~s~~~lP~rl~~ 154 (458)
T 2i4l_A 75 QIVREEQNRAGAIELLMPTLQLADLWRESGRYDAYGPEMLRIADRHKRELLYGPTNEEMITEIFRAYIKSYKSLPLNLYH 154 (458)
T ss_dssp HHHHHHHHHTTCEECBCCSEEEHHHHHHHTHHHHSCTTSEEEECTTCCEEEECSCCHHHHHHHHHHHCCBGGGCSEEEEE
T ss_pred HHHHHHHHHcCCEEEEcCccCcHHHHHhcCCccccccceEEEEeCCCCeEEECCCChHHHHHHHHHHHhhccccCeeeEE
Confidence 5889999999999999999965321 122 234543 3346789998632 3333332221 2 58999
Q ss_pred EeeeeecC-CCCCc-cCcceeeeeeeEeecCCHHHHHHHHHHH
Q psy8087 223 IAQSYRAE-NSRTR-RHLAEYTHVEAECAFLTFDDLLDKLEDL 263 (658)
Q Consensus 223 I~~~FR~E-~~~~~-rHl~EFt~lE~e~a~~d~~~~m~~~e~l 263 (658)
||+|||+| ..... --..||+|+|+|.-..+..++-..+..+
T Consensus 155 ig~~fR~E~~p~~Gl~R~REF~q~d~~~f~~~~~~ad~e~~~~ 197 (458)
T 2i4l_A 155 IQWKFRDEQRPRFGVMRGREFLMKDAYSFDVDEAGARKSYNKM 197 (458)
T ss_dssp EEEEECCCSSCBTGGGBCSEEEEEEEEEEESSHHHHHHHHHHH
T ss_pred ecCEeeCCCCCCCCcccccceEEeEEEEEECCHHHHHHHHHHH
Confidence 99999999 32111 0236999999999877766654444433
|
| >3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00031 Score=77.41 Aligned_cols=109 Identities=13% Similarity=0.065 Sum_probs=69.6
Q ss_pred CchHHHh-hhCCcEEEcCCccccccC---CCC-----ccceeecc---CCcceeeccCHHHHHHHhccc-------C-Cc
Q psy8087 160 GYPPEVS-LANGIAKVTPPTLVQTQV---EGG-----STLFSLNF---FGEPAYLTQSSQLYLETCLPA-------L-GD 219 (658)
Q Consensus 160 ~~iR~fl-~~~gF~EV~TPiL~~~~~---eG~-----~~~F~~~~---~~~~~~L~~Spqlylk~li~g-------~-~r 219 (658)
+.+|+.+ .+.||.||.||+|..... .|. .+.|.+.. -+..++|+--.+.-.=++... + -|
T Consensus 72 ~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sGh~~~~~~emy~~~d~~~~~~~l~LrPt~~~~~~~~~~~~~~s~r~LPlr 151 (460)
T 3uh0_A 72 EFMKLQQKFKFGFNEVVTPLIYKKTLWEKSGHWENYADDMFKVETTDEEKEEYGLKPMNCPGHCLIFGKKDRSYNELPLR 151 (460)
T ss_dssp HHHHHHHHHTSCCEECCCCSEEEHHHHHHHTCTTTSGGGSCEECC------CEEECSCSHHHHHHHHTTSCCBGGGCSEE
T ss_pred HHHHHHHHHhcCCEEEECCeeccHHHHHhcCCccccccceEEEecCCCCCceEEEcccCcHHHHHHHHhccccccccCeE
Confidence 5888999 999999999999964321 122 23454332 256789986554333333221 2 37
Q ss_pred EEEEeeeeecCCCCC--c-cCcceeeeeeeEeecCCHHHHHHHHHHHHHHHHH
Q psy8087 220 VYCIAQSYRAENSRT--R-RHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVD 269 (658)
Q Consensus 220 vfeI~~~FR~E~~~~--~-rHl~EFt~lE~e~a~~d~~~~m~~~e~li~~i~~ 269 (658)
+|++|+|||+|.... . .-.-||+|.|++. |.+-+++.+.+++++..+..
T Consensus 152 l~~~g~~fR~E~~~~~~GL~R~ReF~q~d~~~-f~~~e~~~~e~~~~i~~~~~ 203 (460)
T 3uh0_A 152 FSDFSPLHRNEASGALSGLTRLRKFHQDDGHI-FCTPSQVKSEIFNSLKLIDI 203 (460)
T ss_dssp EEECCEEECCCCTTTCBTTTBCSEEEEEEEEE-EECGGGHHHHHHHHHHHHHH
T ss_pred EEEecCeeeCCCCCCCCCceeeeeEEEeeEEE-EcCHHHHHHHHHHHHHHHHH
Confidence 999999999998631 1 0124999999995 67767777776666655443
|
| >2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A* | Back alignment and structure |
|---|
Probab=97.36 E-value=0.0005 Score=77.86 Aligned_cols=102 Identities=18% Similarity=0.187 Sum_probs=69.7
Q ss_pred CchHHHhhhCCcEEEcCCccccccC---CCC-----ccceee-ccCCcceeeccCHH-----HHHHHhcc--cC-CcEEE
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV---EGG-----STLFSL-NFFGEPAYLTQSSQ-----LYLETCLP--AL-GDVYC 222 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~---eG~-----~~~F~~-~~~~~~~~L~~Spq-----lylk~li~--g~-~rvfe 222 (658)
+.+|+.|...||.||.||+|..... .|. .+.|.+ +--|..++||--.+ +|...+.. -+ -|+|+
T Consensus 55 ~~~~~~~~~~G~~ei~tP~l~~~~l~~~sG~~~~~~~~m~~~~d~~~~~~~LrP~~~~~~~~~~~~~~~s~~~lP~r~~~ 134 (572)
T 2j3l_A 55 TIMREEFEKIDAVEMLMPALLPAELWKESGRYETYGPNLYRLKDRNDRDYILGPTHEETFTELIRDEINSYKRLPLNLYQ 134 (572)
T ss_dssp HHHHHHHHTTTCEECBCCSEEETHHHHHHSHHHHSCTTSCEEECTTCCEEEECSCCHHHHHHHHHHHCCBGGGCCEEEEE
T ss_pred HHHHHHHHHcCCEEEECCccccHHHHHhcCCccccchheEEEecCCCCeEEEccccHHHHHHHHHhhccChhhcCHhhhe
Confidence 5789999999999999999965421 121 234543 33467899975543 34443322 12 38999
Q ss_pred EeeeeecCCCCCccC----cceeeeeeeEeecCCHHHHHHHHHHH
Q psy8087 223 IAQSYRAENSRTRRH----LAEYTHVEAECAFLTFDDLLDKLEDL 263 (658)
Q Consensus 223 I~~~FR~E~~~~~rH----l~EFt~lE~e~a~~d~~~~m~~~e~l 263 (658)
||+|||+|.. . +| .-||+|.|+|.-..+..++...++.+
T Consensus 135 ~g~~fR~E~~-~-~~Gl~R~ReF~q~d~~~f~~~~~~~~~e~~~~ 177 (572)
T 2j3l_A 135 IQTKYRDEKR-S-RSGLLRGREFIMKDGYSFHADEASLDQSYRDY 177 (572)
T ss_dssp EEEEECCCSS-C-CTGGGSCSEEEEEEEEEEESSHHHHHHHHHHH
T ss_pred ecCeeccCcC-c-ccCccccceeEEeeeEEEcCCHHHHHHHHHHH
Confidence 9999999986 2 33 25999999999877766665555553
|
| >2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.0011 Score=73.51 Aligned_cols=65 Identities=18% Similarity=0.237 Sum_probs=45.5
Q ss_pred eeecc--CHHHHHHH--hcc-cC--CcEEEEeeeeecCCC-CCccCcceeeeeeeEeecC--CHHHHHHHHHHHHH
Q psy8087 200 AYLTQ--SSQLYLET--CLP-AL--GDVYCIAQSYRAENS-RTRRHLAEYTHVEAECAFL--TFDDLLDKLEDLIC 265 (658)
Q Consensus 200 ~~L~~--Spqlylk~--li~-g~--~rvfeI~~~FR~E~~-~~~rHl~EFt~lE~e~a~~--d~~~~m~~~e~li~ 265 (658)
..||+ +|-|..+. +.. +. -|+||+|+|||++.. +. +|.+||.||+.-+... |+.|+...+|.++.
T Consensus 193 svLRTsLlPGLL~~vr~N~~r~~~pvrlFEiGrVFr~D~~~d~-th~~ef~qLaglv~G~~vdF~DLKG~Le~ll~ 267 (549)
T 2du7_A 193 LTLRSHMTSGWFITLSSLIKKRKLPLKLFSIDRCFRREQREDR-SHLMSYHSASCVVVGEDVSVDDGKVVAEGLLA 267 (549)
T ss_dssp EECCSTTHHHHHHHHHTTTTTSCSSEEEEEEEEECCCCSSCSS-SCCSCEEEEEEEEECTTCCHHHHHHHHHHHHG
T ss_pred cccccccchhHHHHHHHHHhcCCCCeEEEEEeeEEecCCcccC-cCCCcceEEEEEEECCCCCHHHHHHHHHHHHH
Confidence 34654 46555552 222 32 379999999998764 43 6999999999998875 67777777766664
|
| >1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00091 Score=72.81 Aligned_cols=106 Identities=14% Similarity=0.248 Sum_probs=71.7
Q ss_pred CchHHHhhhCCcEEEcCCccccccC---CCC-----ccceeeccCCcceeeccCHHHHHHHhccc-------C-CcEEEE
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV---EGG-----STLFSLNFFGEPAYLTQSSQLYLETCLPA-------L-GDVYCI 223 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~---eG~-----~~~F~~~~~~~~~~L~~Spqlylk~li~g-------~-~rvfeI 223 (658)
+.+++.+.+.||.||.||+|..... .|. .+.|++. +.++||+-..+-.+-.+... + -|+|++
T Consensus 174 ~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sG~~~~f~~emy~~~--d~~l~L~Pt~e~~~~~~~~~~~~s~~~LPlr~~~~ 251 (421)
T 1ses_A 174 RFAMDFMARRGFLPMTLPSYAREKAFLGTGHFPAYRDQVWAIA--ETDLYLTGTAEVVLNALHSGEILPYEALPLRYAGY 251 (421)
T ss_dssp HHHHHHHHHTTCEEEECCSEEEHHHHHHHTCTTTTGGGSCBBT--TSSEEECSSTHHHHHHTTTTCEEEGGGCSEEEEEE
T ss_pred HHHHHHHHHcCCEEEeCCceecHHHHHhcCCCCcCchhcEEEc--CCeEEEeecCcHHHHHHhcccccCchhCCEEEEec
Confidence 5788888899999999999964321 121 2344433 46789998877666555431 2 379999
Q ss_pred eeeeecCCCCCc--c----CcceeeeeeeEeecCC-HHHHHHHHHHHHHHH
Q psy8087 224 AQSYRAENSRTR--R----HLAEYTHVEAECAFLT-FDDLLDKLEDLICDT 267 (658)
Q Consensus 224 ~~~FR~E~~~~~--r----Hl~EFt~lE~e~a~~d-~~~~m~~~e~li~~i 267 (658)
|+|||+|-+... + -.-||+|.|++..... .++..+..++++..+
T Consensus 252 g~~FR~E~g~~Gr~~~GL~R~rqF~q~E~~~f~~p~~e~s~~~~~e~~~~~ 302 (421)
T 1ses_A 252 APAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLENA 302 (421)
T ss_dssp EEEECCCCSCCCSCCCTTSSCSEEEEEEEEEEECSCHHHHHHHHHHHHHHH
T ss_pred CCeecCCccccCcCCCCCeeeeeeeeeeEEEEeCCCHHHHHHHHHHHHHHH
Confidence 999999953110 1 1249999999886555 577777777766543
|
| >1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00035 Score=80.37 Aligned_cols=106 Identities=15% Similarity=0.166 Sum_probs=70.6
Q ss_pred CchHHHhhhCCcEEEcCCccccccC---CCC-----ccceee-ccCC-cceeeccCHHHHHHHhcc-c------C-CcEE
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV---EGG-----STLFSL-NFFG-EPAYLTQSSQLYLETCLP-A------L-GDVY 221 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~---eG~-----~~~F~~-~~~~-~~~~L~~Spqlylk~li~-g------~-~rvf 221 (658)
+.+|+.+.+.||.||.||+|..... .|. .+.|.+ +--| ..++|+--..-..=++.. . + -|+|
T Consensus 279 ~~ir~~~~~~Gy~eV~tP~l~~~~l~~~sG~~d~~~~~mf~~~d~~~~~~~~LrP~~~~~~~~~~~~~~~syr~LPlrl~ 358 (645)
T 1nyr_A 279 RYIVDKEVSMGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPPMQLDETESMVLRPMNCPHHMMIYANKPHSYRELPIRIA 358 (645)
T ss_dssp HHHHHHHHHTTEEECBCCSEEETHHHHHHTHHHHCTTSSCCCEEETTTEEEEECSSSHHHHHHHHHTSCCBGGGCCEEEE
T ss_pred HHHHHHHHHcCCEEEECCeeccHHHHhhCCCccccccCcceeEecCCCeEEEeCCCCCHHHHHHHHhhhhhccCCCeEEE
Confidence 5789999999999999999964421 122 134432 3346 788998654443333222 1 2 4899
Q ss_pred EEeeeeecCCCCCccC----cceeeeeeeEeecCCHHHHHHHHHHHHHHH
Q psy8087 222 CIAQSYRAENSRTRRH----LAEYTHVEAECAFLTFDDLLDKLEDLICDT 267 (658)
Q Consensus 222 eI~~~FR~E~~~~~rH----l~EFt~lE~e~a~~d~~~~m~~~e~li~~i 267 (658)
+||+|||+|.+.. +| .-||||.|+|. |.+.+.+.+...+++..+
T Consensus 359 ~~g~~fR~E~~~~-~~GL~R~ReF~Q~d~~~-f~~~~~~~d~~~e~i~~~ 406 (645)
T 1nyr_A 359 ELGTMHRYEASGA-VSGLQRVRGMTLNDSHI-FVRPDQIKEEFKRVVNMI 406 (645)
T ss_dssp EEEEEECCCCTTT-CBTTTBCSEEEEEEEEE-EECGGGHHHHHHHHHHHH
T ss_pred EeccEEecCCCcc-ccCcceeeeEEEccEEE-EcCHHHHHHHHHHHHHHH
Confidence 9999999998742 33 26999999998 777666666555555433
|
| >2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00034 Score=76.92 Aligned_cols=103 Identities=18% Similarity=0.306 Sum_probs=72.4
Q ss_pred CchHHHhhhCCcEEEcCCccccccC---CCCc-----cceeeccCCcceeeccCHHHHHHHhccc-------C-CcEEEE
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV---EGGS-----TLFSLNFFGEPAYLTQSSQLYLETCLPA-------L-GDVYCI 223 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~---eG~~-----~~F~~~~~~~~~~L~~Spqlylk~li~g-------~-~rvfeI 223 (658)
+.+++.+.+.||.||.||+|..... .|.. +.|++. +.++||+-..+.-+=.+... + -|+|++
T Consensus 201 ~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sG~~~~f~~emy~~~--d~~l~LrPt~e~~~~~~~~~~~~s~~~LPlr~~~~ 278 (455)
T 2dq0_A 201 RFALDRLIEKGFTPVIPPYMVRRFVEEGSTSFEDFEDVIYKVE--DEDLYLIPTAEHPLAGMHANEILDGKDLPLLYVGV 278 (455)
T ss_dssp HHHHHHHHHTTCEEEECCSEECHHHHHTTSCTTHHHHTCCBBT--TSSCEECSSTHHHHHHTTTTEEEETTTCSEEEEEE
T ss_pred HHHHHHHHHcCCEEEeCCcccCHHHHHhcCCCCCChHhhCeec--CCcEEEcCcCcHHHHHHHHhCccCchhCCEEEEEe
Confidence 5778888889999999999975421 2322 234332 56889997777655544331 2 379999
Q ss_pred eeeeecCCCCC--------ccCcceeeeeeeEeecCCHHHHHHHHHHHHHHH
Q psy8087 224 AQSYRAENSRT--------RRHLAEYTHVEAECAFLTFDDLLDKLEDLICDT 267 (658)
Q Consensus 224 ~~~FR~E~~~~--------~rHl~EFt~lE~e~a~~d~~~~m~~~e~li~~i 267 (658)
|+|||+|.... +-| ||+|.|++ .|.+-++..+..++++..+
T Consensus 279 g~~FR~E~~~~G~~~~GL~R~r--qF~kvE~~-~f~~pe~s~~~~~e~l~~~ 327 (455)
T 2dq0_A 279 SPCFRKEAGTAGKDTKGIFRVH--QFHKVEQF-VYSRPEESWEWHEKIIRNA 327 (455)
T ss_dssp EEEECCCTTCSSCSCCSSSSCS--EEEEEEEE-EEECTTTHHHHHHHHHHHH
T ss_pred cCcccCCCCccccccCCceeee--eeEeeeEE-EecCHHHHHHHHHHHHHHH
Confidence 99999997522 224 99999999 6776688887777777544
|
| >3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=9.3e-05 Score=78.51 Aligned_cols=35 Identities=29% Similarity=0.396 Sum_probs=32.0
Q ss_pred eeechhhHHHHHHHHHHHHHHHHHhhcCCcEEecCC
Q psy8087 623 MIRGENTSRVLLMRSVLLQALRAHFADRNYTEVNIE 658 (658)
Q Consensus 623 dLR~~~~~~ifr~Rs~i~~~iR~fL~~~gF~EVeTp 658 (658)
..|++ .+++|++||+|+++||+||+++||+|||||
T Consensus 27 ~~~~~-~~~~lr~Rs~i~~~iR~ff~~~gF~EVeTP 61 (345)
T 3a5y_A 27 WQPSA-SIPNLLKRAAIMAEIRRFFADRGVLEVETP 61 (345)
T ss_dssp TSCSS-CHHHHHHHHHHHHHHHHHHHHTTCEECCCC
T ss_pred cCCch-HHHHHHHHHHHHHHHHHHHHHCCCEEEECC
Confidence 44555 789999999999999999999999999999
|
| >1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1 | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00018 Score=78.21 Aligned_cols=92 Identities=10% Similarity=0.123 Sum_probs=57.5
Q ss_pred CchHHHhhhCCcEEEcCCccccccC---C-CC------ccceee-ccCCcceeeccCHHHHHHHhcc----c-----CCc
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV---E-GG------STLFSL-NFFGEPAYLTQSSQLYLETCLP----A-----LGD 219 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~---e-G~------~~~F~~-~~~~~~~~L~~Spqlylk~li~----g-----~~r 219 (658)
+.+|+.|...||.||.||+|..... . |+ .+.|.+ +.-|..++||--.....=+++. . --|
T Consensus 24 ~~~~~~~~~~G~~ei~tP~l~~~~l~~~~~g~~~~~~~~~m~~~~D~~g~~~~Lrp~~t~~~~r~~~~~~~~~~~~lP~r 103 (420)
T 1qe0_A 24 NQLDELMTFYNYKEIRTPIFESTDLFARGVGDSTDVVQKEMYTFKDKGDRSITLRPEGTAAVVRSYIEHKMQGNPNQPIK 103 (420)
T ss_dssp HHHHHHHHHHTCEECBCCSEEEHHHHCC-----------CCEEECHHHHCCEEECSCSHHHHHHHHHHTTGGGCSSCSEE
T ss_pred HHHHHHHHHcCCEEccCcccchHHHhhhccCCccchhhhheEEEEcCCCCEEEeCCCChHHHHHHHHhccccccCCCCeE
Confidence 5789999999999999999965321 1 22 134443 2235678887543333322221 1 248
Q ss_pred EEEEeeeeecCCCCCccCcceeeeeeeEeecCC
Q psy8087 220 VYCIAQSYRAENSRTRRHLAEYTHVEAECAFLT 252 (658)
Q Consensus 220 vfeI~~~FR~E~~~~~rHl~EFt~lE~e~a~~d 252 (658)
+|++|+|||+|.... -+.-||+|+|+|.-..+
T Consensus 104 ~~~~g~vfR~E~~~~-gR~reF~q~~~e~~~~~ 135 (420)
T 1qe0_A 104 LYYNGPMFRYERKQK-GRYRQFNQFGVEAIGAE 135 (420)
T ss_dssp EEEEEEEECC--------CCEEEEEEEEEESCC
T ss_pred EEEecCEeecCCCcC-CCcccEEEeeEEEECCC
Confidence 999999999997654 35679999999998775
|
| >3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00045 Score=76.02 Aligned_cols=105 Identities=13% Similarity=0.233 Sum_probs=73.1
Q ss_pred CchHHHhhhCCcEEEcCCccccccC---CCC-----ccceeeccCCcceeeccCHHHHHHHhccc--CC--------cEE
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV---EGG-----STLFSLNFFGEPAYLTQSSQLYLETCLPA--LG--------DVY 221 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~---eG~-----~~~F~~~~~~~~~~L~~Spqlylk~li~g--~~--------rvf 221 (658)
+.+++.+.+.||.||.||.|..... .|- .+.|.+.--+.++||.-..|.-+=.+... +. |+|
T Consensus 193 ~~~~d~~~~~Gy~eV~~P~lv~~~l~~~sG~l~~f~eemf~v~~~~~~~~LipTaE~pl~~l~~~ei~~S~y~dLPlr~~ 272 (485)
T 3qne_A 193 NYGLSFLSSKGYVPLQAPVMMNKEVMAKTAQLSQFDEELYKVIDGEDEKYLIATSEQPISAYHAGEWFESPAEQLPVRYA 272 (485)
T ss_dssp HHHHHHHHTTTCEEEECCSEEEHHHHHHHSCHHHHTTTCCEEEETTEEEEECSSTHHHHHHHTTTCEESSHHHHCCEEEE
T ss_pred HHHHHHHHHcCCEEEeCCccccHHHHhhcCCccccccceEEEeCCCCeEEEeccccHHHHHHHhccccccchhcCCeeEE
Confidence 4777888889999999999975431 121 23454432256789987777666555442 23 599
Q ss_pred EEeeeeecCCCC--------CccCcceeeeeeeEeecCCHHHHHHHHHHHHHHH
Q psy8087 222 CIAQSYRAENSR--------TRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDT 267 (658)
Q Consensus 222 eI~~~FR~E~~~--------~~rHl~EFt~lE~e~a~~d~~~~m~~~e~li~~i 267 (658)
++++|||+|... -+-| ||+|.|.+. |.+-++..+..++|+...
T Consensus 273 ~~s~cfR~Eag~~Grdt~GL~Rvh--qF~kvE~~~-f~~pe~s~~e~e~ml~~~ 323 (485)
T 3qne_A 273 GYSSCFRREAGSHGKDAWGIFRVH--AFEKIEQFV-LTEPEKSWEEFDRMIGCS 323 (485)
T ss_dssp EEEEEECSCCC-----CCSSSSCS--EEEEEEEEE-EECGGGHHHHHHHHHHHH
T ss_pred EecccccCCCCCCCccCCCceeee--eeeeeeEEE-EeCHHHHHHHHHHHHHHH
Confidence 999999999642 1234 999999997 677788888777777544
|
| >1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A* | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00054 Score=76.36 Aligned_cols=106 Identities=17% Similarity=0.112 Sum_probs=73.1
Q ss_pred CchHHHhhhCCcEEEcCCcccccc-CC--CC------ccceeeccC-----CcceeeccCHHHH-----HHHhcc--cC-
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQ-VE--GG------STLFSLNFF-----GEPAYLTQSSQLY-----LETCLP--AL- 217 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~-~e--G~------~~~F~~~~~-----~~~~~L~~Spqly-----lk~li~--g~- 217 (658)
+.+|+.|.+ ||.||.||+|.... -. .| .+.|.+..- +.+++|+--.+.- .+.+.. -+
T Consensus 79 ~~~~~~~~~-G~~ei~tP~l~~~~l~~~~sG~~~~f~~emy~~~d~g~~~~~~~l~LrPt~e~~i~~~~~~~~~s~~~LP 157 (501)
T 1nj1_A 79 KILRRILDR-DHEEVLFPLLVPEDELAKEAIHVKGFEDEVYWVTHGGLSKLQRKLALRPTSETVMYPMFALWVRSHTDLP 157 (501)
T ss_dssp HHHHHHHTT-TCEECCCCSEEEHHHHTTSHHHHHHTTTTCCEEEEETTEEEEEEEEECSSSHHHHHHHHHHHCCBTTTCC
T ss_pred HHHHHHHHc-CCEEEecCcEecHHHHhcccCCcccCCcceEEEecCCCcccCCeeEEccCCCHHHHHHHHhhhcccccCC
Confidence 578899988 99999999997543 11 11 234544332 4678998666543 333332 12
Q ss_pred CcEEEEeeeeecCCCCC-c--cCcceee-eeeeEeecCCHHHHHHHHHHHHHHH
Q psy8087 218 GDVYCIAQSYRAENSRT-R--RHLAEYT-HVEAECAFLTFDDLLDKLEDLICDT 267 (658)
Q Consensus 218 ~rvfeI~~~FR~E~~~~-~--rHl~EFt-~lE~e~a~~d~~~~m~~~e~li~~i 267 (658)
-|+|++|+|||+|..++ . | .-||+ |.|++..+.+.++....+++++...
T Consensus 158 lr~~q~g~~fR~E~~~~rGl~R-~REF~~q~e~~~~~~~~e~a~~e~~~~l~~~ 210 (501)
T 1nj1_A 158 MRFYQVVNTFRYETKHTRPLIR-VREITTFKEAHTIHATASEAEEQVERAVEIY 210 (501)
T ss_dssp EEEEEEEEEECCCCSCCBTTTB-CSEEEEEEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred EEEEeecCEeeCCCCCCCCCce-eEEEeeeeeEEEEECCHHHHHHHHHHHHHHH
Confidence 38999999999998622 1 1 13999 9999999999888887777766533
|
| >1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00086 Score=71.11 Aligned_cols=92 Identities=16% Similarity=0.164 Sum_probs=58.5
Q ss_pred CchHHHhhhCCcEEEcCCccccccC-----CC-----Cccceee-ccCCcceeeccCHHHHHHHhcc-c----CCcEEEE
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV-----EG-----GSTLFSL-NFFGEPAYLTQSSQLYLETCLP-A----LGDVYCI 223 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~-----eG-----~~~~F~~-~~~~~~~~L~~Spqlylk~li~-g----~~rvfeI 223 (658)
+.+|+.|...||.||.||+|..... +| ..+.|+. +--|..+.||--.-.-.=++++ . --|.|+|
T Consensus 44 ~~i~~~~~~~Gy~eI~tP~le~~el~~~s~~g~~~~~~~~my~~~D~~g~~l~LRpd~T~~~aR~~~~~~~~~P~rl~y~ 123 (344)
T 1z7m_A 44 GRLRKLFSLKNYQEVMPPSFEYTQLYTALESNGKTFNQEKMFQFIKHEGQSITLRYDFTLPLVRLYSQIKDSTSARYSYF 123 (344)
T ss_dssp HHHHHHHHHTTCEECCCCSEEEHHHHHHHHCSSSCCCTTSCCEEECTTCCEEEECCCSHHHHHHHHHTCCSCCCEEEEEE
T ss_pred HHHHHHHHHcCCEEecCcccCcHHHHhhccCCccccccccEEEEECCCCCEEecCCCCcHHHHHHHHhcCCCCCeEEEEE
Confidence 5789999999999999999954311 02 1245543 3456778887422222222222 1 2489999
Q ss_pred eeeeecCCCCCccCcceeeeeeeEeecCC
Q psy8087 224 AQSYRAENSRTRRHLAEYTHVEAECAFLT 252 (658)
Q Consensus 224 ~~~FR~E~~~~~rHl~EFt~lE~e~a~~d 252 (658)
|++||+|.... -+.-||+|+++|.-..+
T Consensus 124 g~vfR~e~p~~-gR~REF~Q~g~ei~g~~ 151 (344)
T 1z7m_A 124 GKIFRKEKRHK-GRSTENYQIGIELFGES 151 (344)
T ss_dssp EECCCCCC--------CCEEEEEEEESSC
T ss_pred CcEEccCCCCC-CCcceeEEEEEEEEcCC
Confidence 99999997654 36689999999998765
|
| >2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0015 Score=73.30 Aligned_cols=66 Identities=20% Similarity=0.256 Sum_probs=46.3
Q ss_pred eeecc--CHHHHHHH--hcc-cC--CcEEEEeeeeecCCC-CCccCcceeeeeeeEeecC--CHHHHHHHHHHHHHH
Q psy8087 200 AYLTQ--SSQLYLET--CLP-AL--GDVYCIAQSYRAENS-RTRRHLAEYTHVEAECAFL--TFDDLLDKLEDLICD 266 (658)
Q Consensus 200 ~~L~~--Spqlylk~--li~-g~--~rvfeI~~~FR~E~~-~~~rHl~EFt~lE~e~a~~--d~~~~m~~~e~li~~ 266 (658)
..||+ +|-|..+. +.. +. -|+||+|+|||++.. +. +|.+||.||+.-+... |+.|+...+|.++..
T Consensus 200 sVLRTsLlPGLL~~vr~N~~R~~~pvRLFEIGrVFR~D~~lDa-th~~Ef~qLeGlv~G~~vdF~DLKGvLE~LL~~ 275 (648)
T 2odr_B 200 LTLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDK-SHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQ 275 (648)
T ss_dssp EEECCCTHHHHHHHHHHHTTTSCSCEEEEEEEEEECCCSCCCS-SCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHT
T ss_pred CcccccchhhHHHHHHHHHhcCCCCeEEEEEeeEEecCccccc-cCCCcceEEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 35654 46555442 222 32 479999999998764 43 7999999999998875 677877777776653
|
| >2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0016 Score=73.22 Aligned_cols=66 Identities=20% Similarity=0.256 Sum_probs=46.3
Q ss_pred eeecc--CHHHHHHH--hcc-cC--CcEEEEeeeeecCCC-CCccCcceeeeeeeEeecC--CHHHHHHHHHHHHHH
Q psy8087 200 AYLTQ--SSQLYLET--CLP-AL--GDVYCIAQSYRAENS-RTRRHLAEYTHVEAECAFL--TFDDLLDKLEDLICD 266 (658)
Q Consensus 200 ~~L~~--Spqlylk~--li~-g~--~rvfeI~~~FR~E~~-~~~rHl~EFt~lE~e~a~~--d~~~~m~~~e~li~~ 266 (658)
..||+ +|-|..+. +.. +. -|+||+|+|||++.. +. +|.+||.||+.-+... |+.|+...+|.++..
T Consensus 200 sVLRTSLlPGLL~~lr~N~~R~~~pvRLFEIGrVFR~D~~lDa-th~~Ef~qLeGlv~G~~vdF~DLKGvLE~LL~~ 275 (665)
T 2odr_A 200 LTLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDK-SHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQ 275 (665)
T ss_dssp EEECCCTHHHHHHHHHHHTTTSCSCEEEEEEEEEECCCSCCCS-SCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHT
T ss_pred CcccccchhhHHHHHHHHHhcCCCCeEEEEEeeEEecCccccc-cCCCcceEEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 35654 46555442 222 32 479999999998764 43 7999999999998875 677877777776653
|
| >2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0016 Score=73.21 Aligned_cols=66 Identities=20% Similarity=0.256 Sum_probs=46.4
Q ss_pred eeecc--CHHHHHH--Hhcc-cC--CcEEEEeeeeecCCC-CCccCcceeeeeeeEeecC--CHHHHHHHHHHHHHH
Q psy8087 200 AYLTQ--SSQLYLE--TCLP-AL--GDVYCIAQSYRAENS-RTRRHLAEYTHVEAECAFL--TFDDLLDKLEDLICD 266 (658)
Q Consensus 200 ~~L~~--Spqlylk--~li~-g~--~rvfeI~~~FR~E~~-~~~rHl~EFt~lE~e~a~~--d~~~~m~~~e~li~~ 266 (658)
..||+ +|-|..+ .+.. +. -|+||+|+|||++.. +. +|.+||.||+.-+... |+.|+...+|.++..
T Consensus 200 sVLRTSLlPGLL~~vr~N~~R~~~pvRLFEIGrVFR~D~~lDa-th~~Ef~qLeGlv~G~~vDF~DLKGvLE~LL~~ 275 (685)
T 2odr_D 200 LTLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDK-SHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQ 275 (685)
T ss_dssp EEECCCTHHHHHHHHHHHTTTSCSCEEEEEEEEEECCCSCCCS-SCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHT
T ss_pred CcccccchhhHHHHHHHHHhCCCCCeEEEEeccEEecCccccc-cCCCcceEEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 35654 4655544 2222 32 479999999998764 43 7999999999998875 677877777776653
|
| >2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0017 Score=73.14 Aligned_cols=66 Identities=20% Similarity=0.256 Sum_probs=46.3
Q ss_pred eeecc--CHHHHHHH--hcc-cC--CcEEEEeeeeecCCC-CCccCcceeeeeeeEeecC--CHHHHHHHHHHHHHH
Q psy8087 200 AYLTQ--SSQLYLET--CLP-AL--GDVYCIAQSYRAENS-RTRRHLAEYTHVEAECAFL--TFDDLLDKLEDLICD 266 (658)
Q Consensus 200 ~~L~~--Spqlylk~--li~-g~--~rvfeI~~~FR~E~~-~~~rHl~EFt~lE~e~a~~--d~~~~m~~~e~li~~ 266 (658)
..||+ +|-|..+. +.. +. -|+||+|+|||++.. +. +|.+||.||+.-+... |+.|+...+|.++..
T Consensus 200 sVLRTSLlPGLL~~vr~N~~R~~~pvRLFEIGrVFR~D~~lDa-th~~EfhqLeGlv~G~~vDF~DLKGvLE~LL~~ 275 (701)
T 2odr_C 200 LTLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDK-SHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQ 275 (701)
T ss_dssp EEECCCTHHHHHHHHHHHTTTSCSCEEEEEEEEEECCCSCCCS-SCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHT
T ss_pred CcccccchhhHHHHHHHHHhCCCCCeEEEEEeeEEccCccccc-cCCCcceEEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 35654 46555442 222 32 479999999998764 43 7999999999998875 677877777776653
|
| >3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00066 Score=75.61 Aligned_cols=108 Identities=20% Similarity=0.230 Sum_probs=74.6
Q ss_pred CchHHHhhhCCcEEEcCCccccccC---CCC------ccceeecc-----CCcceeeccCHH-----HHHHHhcc--cC-
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV---EGG------STLFSLNF-----FGEPAYLTQSSQ-----LYLETCLP--AL- 217 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~---eG~------~~~F~~~~-----~~~~~~L~~Spq-----lylk~li~--g~- 217 (658)
+.+|+.+.+.||.||.||+|.+... +.| .+.|.+.. .+.+++|+-..+ +|.+.+.. -+
T Consensus 63 ~~~~~~~~~~Gy~eV~tP~l~~~el~~k~sgh~~~f~~emy~v~d~g~~~~~~~l~LrPt~e~~i~~~~~~~i~SyrdLP 142 (518)
T 3ial_A 63 RLCEEEYAKVGISQILFPTVIPESFLKKESDHIKGFEAECFWVEKGGLQPLEERLALRPTSETAIYSMFSKWVRSYKDLP 142 (518)
T ss_dssp HHHHHHHHHTTCEECBCCSEEEHHHHTSSHHHHHHHGGGCEEEEEETTEEEEEEEEECSSSHHHHHHHHHHHCCBGGGCC
T ss_pred HHHHHHHHHcCCEEEEcccccCHHHHHhhcCCcccccccEEEEecCCCcccCcceeECCCCcHHHHHHHHhhhcccccCC
Confidence 5788889999999999999965431 122 23454432 246899986665 34444333 13
Q ss_pred CcEEEEeeeeecCCCCC-c-cCcceeeeeeeEeecCCHHHHHHHHHHHHHHH
Q psy8087 218 GDVYCIAQSYRAENSRT-R-RHLAEYTHVEAECAFLTFDDLLDKLEDLICDT 267 (658)
Q Consensus 218 ~rvfeI~~~FR~E~~~~-~-rHl~EFt~lE~e~a~~d~~~~m~~~e~li~~i 267 (658)
-|+|++|+|||+|-..+ . --.-||+|.|.+....+.+++.+.++.++...
T Consensus 143 lrl~q~~~~fR~E~~~~~GL~R~REF~q~e~h~f~~~~e~a~~e~~~~l~~~ 194 (518)
T 3ial_A 143 LKIHQTCTIFRHETKNTKPLIRVREIHWNEAHCCHATAEDAVSQLSDYWKVI 194 (518)
T ss_dssp EEEEEEEEEECTTCCSCBTTTBCSEEEEEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred eEEEEEeceecCCCCCCCCCceeeEEEEeeEEEEECCHHHHHHHHHHHHHHH
Confidence 47999999999994312 1 01249999999998899999888888877543
|
| >4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00093 Score=74.53 Aligned_cols=107 Identities=15% Similarity=0.135 Sum_probs=72.6
Q ss_pred CchHHHhhhCCcEEEcCCcccccc----CCCCc-----cceeeccC-----CcceeeccCHHH-----HHHHhcc--cC-
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQ----VEGGS-----TLFSLNFF-----GEPAYLTQSSQL-----YLETCLP--AL- 217 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~----~eG~~-----~~F~~~~~-----~~~~~L~~Spql-----ylk~li~--g~- 217 (658)
+.+|+.+.+.||.||.||+|.... ..|.. +.|.+..- +.+++|+--.+- |.+.+.. -+
T Consensus 69 ~~~~~~~~~~Gy~ev~tP~l~~~~l~~k~sGh~~~f~~emy~~~d~g~~~l~e~l~LrPtse~~i~~~~~~~i~SyrdLP 148 (519)
T 4hvc_A 69 DFFDAEIKKLGVENCYFPMFVSQSALEKEKTHVADFAPEVAWVTRSGKTELAEPIAIRPTSETVMYPAYAKWVQSHRDLP 148 (519)
T ss_dssp HHHHHHHHHTTCEECBCCSEEEHHHHTTSCCSCGGGGGGCEEEEEETTEEEEEEEEECSSSHHHHHHHHHHHCSSGGGCC
T ss_pred HHHHHHHHHcCCEEEeccccccHHHHhcccCCcccccccceEEeccCCcccccceeeCCCCcHHHHHHHHhhccccccCC
Confidence 578888899999999999996442 11322 23322211 235888755443 4444433 13
Q ss_pred CcEEEEeeeeecCCCCCc---cCcceeeeeeeEeecCCHHHHHHHHHHHHHHH
Q psy8087 218 GDVYCIAQSYRAENSRTR---RHLAEYTHVEAECAFLTFDDLLDKLEDLICDT 267 (658)
Q Consensus 218 ~rvfeI~~~FR~E~~~~~---rHl~EFt~lE~e~a~~d~~~~m~~~e~li~~i 267 (658)
-|+|++|+|||+|-..++ | .-||+|.|.+..|.+.++..+.++.++...
T Consensus 149 lrl~q~g~~fR~E~~~~~Gl~R-~ReF~q~e~h~~~~~~e~a~~E~~~~l~~~ 200 (519)
T 4hvc_A 149 IKLNQWCNVVRWEFKHPQPFLR-TREFLWQEGHSAFATMEEAAEEVLQILDLY 200 (519)
T ss_dssp EEEEEEEEEECCCCSCCBTTTB-CSEEEEEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred eEEEEEcCeeeCCCCCCCCCcc-eeEEEEeeEEEEecCHHHHHHHHHHHHHHH
Confidence 489999999999943221 1 139999999999999999988888877543
|
| >1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1 | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0016 Score=71.09 Aligned_cols=92 Identities=15% Similarity=0.122 Sum_probs=64.1
Q ss_pred CchHHHhhhCCcEEEcCCccccccC----CC---Cccceee-ccCCcceeeccCHHHHHHHhcc-c----C-CcEEEEee
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV----EG---GSTLFSL-NFFGEPAYLTQSSQLYLETCLP-A----L-GDVYCIAQ 225 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~----eG---~~~~F~~-~~~~~~~~L~~Spqlylk~li~-g----~-~rvfeI~~ 225 (658)
+.+|+-|...||.||.||+|..... .| +.+.|.+ +--|..+.||--.-.-.=++.+ . + -|.|+||+
T Consensus 28 ~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~~~em~~~~D~~g~~l~LrPd~t~~~aR~~~~~~~~~lP~rl~~~g~ 107 (434)
T 1wu7_A 28 KTAEEAAEAFGFRRIDFPSLEYLDLYRIKSGEELLQQTYSFVDKGGREVTLIPEATPSTVRMVTSRKDLQRPLRWYSFPK 107 (434)
T ss_dssp HHHHHHHHHTTCEECBCCSEEETHHHHTTSCTTGGGGSCEEECTTSCEEEECSCSHHHHHHHHTTCTTCCSSEEEEECCE
T ss_pred HHHHHHHHHcCCEEeeccccccHHHhhhccCCccccceEEEECCCCCEEEeCCCChHHHHHHHHhcCCCCCCeEEEEEcC
Confidence 5789999999999999999964321 12 1345654 4456778887533333333332 1 2 48999999
Q ss_pred eeecCCCCCccCcceeeeeeeEeecCC
Q psy8087 226 SYRAENSRTRRHLAEYTHVEAECAFLT 252 (658)
Q Consensus 226 ~FR~E~~~~~rHl~EFt~lE~e~a~~d 252 (658)
+||+|..... +.-||+|+++|.-..+
T Consensus 108 vfR~erp~~g-R~REF~Q~d~ei~g~~ 133 (434)
T 1wu7_A 108 VWRYEEPQAG-RYREHYQFNADIFGSD 133 (434)
T ss_dssp EECCCCSCSS-CCSEEEEEEEEEESCC
T ss_pred eecCCCCCCC-CccceEEeeEEEEcCC
Confidence 9999976554 4579999999998775
|
| >3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0007 Score=74.54 Aligned_cols=105 Identities=18% Similarity=0.309 Sum_probs=71.6
Q ss_pred CchHHHhhhCCcEEEcCCccccccC---CCC-----ccceeeccCCcceeeccCHHHHHHHhccc-------C-CcEEEE
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV---EGG-----STLFSLNFFGEPAYLTQSSQLYLETCLPA-------L-GDVYCI 223 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~---eG~-----~~~F~~~~~~~~~~L~~Spqlylk~li~g-------~-~rvfeI 223 (658)
+.+++.+.++||.||.||.|..... .|- .+.|++.--+.++||.-..|..+=.+... + =|+|++
T Consensus 216 ~f~~d~~~~~Gy~eV~~P~lv~~~l~~~sG~~~~f~e~mf~v~~~~~~~~L~PTaE~~l~~l~~~~i~sy~dLPlr~~~~ 295 (484)
T 3lss_A 216 SYSLDFLVKRGYTPFYPPFFLNRDVMGEVAQLSQFDEELYQVSGDGDKKYLIATSEMPIAAYHRGRWFTELKEPLKYAGM 295 (484)
T ss_dssp HHHHHHHHTTTCEEEECCSEEEHHHHHHHSCHHHHHHTCCEEESSSSCEEECSSTHHHHHHHTTTCEESCCSSCEEEEEE
T ss_pred HHHHHHHHHcCCEEEecCccccHHHHHhcCCcccccccceEeecCCcceEEeccCcHHHHHHHhccccchhhCCeeEEee
Confidence 5778888889999999999975421 121 13455543357899988877766444332 2 359999
Q ss_pred eeeeecCCC-CC-------ccCcceeeeeeeEeecCCHHH--HHHHHHHHHHHH
Q psy8087 224 AQSYRAENS-RT-------RRHLAEYTHVEAECAFLTFDD--LLDKLEDLICDT 267 (658)
Q Consensus 224 ~~~FR~E~~-~~-------~rHl~EFt~lE~e~a~~d~~~--~m~~~e~li~~i 267 (658)
++|||+|.. .+ +-| ||+|.|.+. |..-++ ..+..++|+...
T Consensus 296 s~cFR~Eags~Grdt~GL~Rvr--qF~kvE~~~-f~~pe~~~s~~e~e~~~~~~ 346 (484)
T 3lss_A 296 STCFRKEAGAHGRDTLGIFRVH--QFDKIEQFV-VCSPRQEESWRHLEDMITTS 346 (484)
T ss_dssp EEEECCCTTCSSSCCSTTSSCS--EEEEEEEEE-EECSSTTHHHHHHHHHHHHH
T ss_pred cCccCCCCCcCCcccCCcceee--eEEEEEEEE-EeCcchHHHHHHHHHHHHHH
Confidence 999999963 21 224 999999984 555555 777777776543
|
| >1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0013 Score=72.50 Aligned_cols=105 Identities=18% Similarity=0.169 Sum_probs=72.2
Q ss_pred CchHHHhhhCCcEEEcCCcccccc----CCC-----CccceeeccC-----CcceeeccCHHHHH-----HHhcc--cC-
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQ----VEG-----GSTLFSLNFF-----GEPAYLTQSSQLYL-----ETCLP--AL- 217 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~----~eG-----~~~~F~~~~~-----~~~~~L~~Spqlyl-----k~li~--g~- 217 (658)
+.+|+.|...||.||.||+|.... ..| +.+.|.+..- +..++||--.+--. +.+.. .+
T Consensus 46 ~~~~~~~~~~G~~ei~tP~l~~~~l~~~~~G~~~~~~~emy~~~d~g~~~~~~~l~LRP~~~~~i~~~~~~~~~s~r~LP 125 (459)
T 1nj8_A 46 EIIRNLLDESGHDEALFPMLIPEDLLAKEAEHIKGFEDEVYWVTHGGKTQLDVKLALRPTSETPIYYMMKLWVKVHTDLP 125 (459)
T ss_dssp HHHHHHHHHTTCEECBCCSEEEHHHHHHHCSSSGGGGGGCEEEEESSSSEEEEEEEECSSSHHHHHHHHHTTCCBTTSCC
T ss_pred HHHHHHHHHcCCEEeeCCcccCHHHHhhhcCcccccchhhEEEeccCcccCCCeeEECCCCcHHHHHHHHHhhhhcccCC
Confidence 588999999999999999996532 112 1245554332 56789986655433 22222 12
Q ss_pred CcEEEEeeeeecCCCCC-c--cCcceee-eeeeEeecCCHHHHHHHHHHHHH
Q psy8087 218 GDVYCIAQSYRAENSRT-R--RHLAEYT-HVEAECAFLTFDDLLDKLEDLIC 265 (658)
Q Consensus 218 ~rvfeI~~~FR~E~~~~-~--rHl~EFt-~lE~e~a~~d~~~~m~~~e~li~ 265 (658)
-|+|+||+|||+|.... . | .-||+ |.|.+..+.+.++.....++++.
T Consensus 126 ~rl~qig~~fR~E~~~~rGl~R-~REF~qq~d~~~~~~~~~~a~~e~~~~i~ 176 (459)
T 1nj8_A 126 IKIYQIVNTFRYETKHTRPLIR-LREIMTFKEAHTAHSTKEEAENQVKEAIS 176 (459)
T ss_dssp CCEEEEECCBCCCCSCCBTTTB-CSBCSCEEEEEEEESSHHHHHHHHHHHHH
T ss_pred eEEEEEccEecCccCCCCCceE-eeeeeccCcEEEEECCHHHHHHHHHHHHH
Confidence 48999999999997621 1 2 24999 99999999998887776555554
|
| >2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00049 Score=76.62 Aligned_cols=110 Identities=18% Similarity=0.134 Sum_probs=69.9
Q ss_pred CchHH-HhhhCCcEEEcCCccccccC---CCCc-----cceee---c--c--------------------------CCcc
Q psy8087 160 GYPPE-VSLANGIAKVTPPTLVQTQV---EGGS-----TLFSL---N--F--------------------------FGEP 199 (658)
Q Consensus 160 ~~iR~-fl~~~gF~EV~TPiL~~~~~---eG~~-----~~F~~---~--~--------------------------~~~~ 199 (658)
+.+++ ++.+.||.||.||+|.+... .|.. +.|.+ . . -+.+
T Consensus 239 ~~~~~e~~~~~G~~EV~tP~L~~~el~~~SGh~~~F~demy~v~~~~~Rd~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (522)
T 2cja_A 239 KIVLEELLEPLGYREMIFPKLVTWEVWMKSGHAKGVYPEIYYVCPPQTRDPDYWEEVADYYKVTHEVPTKLIKEKIAEPI 318 (522)
T ss_dssp HHHHHHTHHHHTCEECBCCSEEEHHHHHHHTGGGTCGGGCCEEECBSCCCHHHHHHHHHHHHHHSSCCHHHHHHHBCCCC
T ss_pred HHHHHHHHHHcCCEEEECCCcccHHHHhhcCCcCccccceeeeecCCccchhhhhhhhhhhhccccccccccccccCCCc
Confidence 46675 57788999999999964321 1211 23433 1 1 1457
Q ss_pred eeeccCHHHHHH-----Hhccc--C-CcEEE-EeeeeecCCCCCc---cCcceeeeeeeEeecCCHHHHHHHHHHHHHHH
Q psy8087 200 AYLTQSSQLYLE-----TCLPA--L-GDVYC-IAQSYRAENSRTR---RHLAEYTHVEAECAFLTFDDLLDKLEDLICDT 267 (658)
Q Consensus 200 ~~L~~Spqlylk-----~li~g--~-~rvfe-I~~~FR~E~~~~~---rHl~EFt~lE~e~a~~d~~~~m~~~e~li~~i 267 (658)
+||+-..+.-.= ..... + -|+|+ +|+|||+| ..+. --.-||+|.|++. |.+.++..+..++++...
T Consensus 319 l~LrPt~e~~i~~~f~~~i~s~~~LPlrl~q~ig~~FR~E-pgs~~GL~R~REF~q~E~~~-F~~pe~s~ee~ee~i~~~ 396 (522)
T 2cja_A 319 GGMCYAQCPPFWMYVAGETLPNEEIPVKVFDRSGTSHRYE-SGGIHGIERVDEFHRIEIVW-IGTKEEVLKCAEELHDRY 396 (522)
T ss_dssp EEECSSSSGGGGGGTTTCEECGGGCSEEEEECSSEEECCC-SSSCCCTTSCSEEEEEEEEE-EEEHHHHHHHHHHHHHHH
T ss_pred EEEccCCcHHHHHHHHhcccccccCCeeEEEEcCceEeCC-CCCCCCCeEeEEEEEeeEEE-EeChHHHHHHHHHHHHHH
Confidence 888865543322 22221 2 27999 99999999 4310 1124999999998 788888888888888444
Q ss_pred HHHH
Q psy8087 268 VDRV 271 (658)
Q Consensus 268 ~~~~ 271 (658)
...+
T Consensus 397 ~~~~ 400 (522)
T 2cja_A 397 MHIF 400 (522)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
|
| >1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0026 Score=70.45 Aligned_cols=106 Identities=21% Similarity=0.273 Sum_probs=74.0
Q ss_pred CchHHHhhhCCcEEEcCCccccccC---CC-----Cc-cceeeccC-CcceeeccCHHHHHHHhccc-------C-CcEE
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV---EG-----GS-TLFSLNFF-GEPAYLTQSSQLYLETCLPA-------L-GDVY 221 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~---eG-----~~-~~F~~~~~-~~~~~L~~Spqlylk~li~g-------~-~rvf 221 (658)
+.+++.+.+.||.||.||.|..... .| +. +.|++.-- +.++||+-..|..+=.+... + =|+|
T Consensus 227 ~~~~d~~~~~Gy~eV~~P~lv~~~l~~~sG~~~~f~e~emf~v~~~~~~~l~L~PTaE~~~~~l~~~~i~s~~~LPlrl~ 306 (501)
T 1wle_A 227 NFTLNKLIHRGFTPMTVPDLLRGVVFEGCGMTPNAKPSQIYNIDPSRFEDLNLAGTAEVGLAGYFMDHSVAFRDLPIRMV 306 (501)
T ss_dssp HHHHHHHHHTTCEEEECCSEECHHHHHHHTCCSSSSSCSSCBBCTTTSSSCEECSSHHHHHHHHHTTEEEEGGGCSEEEE
T ss_pred HHHHHHHHHcCCEEEeCCccccHHHHHhhcCCCccCccccEEEecCCCCeEEECCcCcHHHHHHHhhccCCcccCCeeEE
Confidence 5778888899999999999975421 11 22 45654322 45799998877655433321 2 3799
Q ss_pred EEeeeeecCCCC-------CccCcceeeeeeeEeecCCH-HHHHHHHHHHHHHH
Q psy8087 222 CIAQSYRAENSR-------TRRHLAEYTHVEAECAFLTF-DDLLDKLEDLICDT 267 (658)
Q Consensus 222 eI~~~FR~E~~~-------~~rHl~EFt~lE~e~a~~d~-~~~m~~~e~li~~i 267 (658)
++++|||+|-.. -+-| ||+|.|.+.--.+. ++..+..++|+...
T Consensus 307 ~~s~~FR~Ea~~G~d~~GL~Rvh--qF~kvE~~~f~~pe~e~s~~~~e~~l~~~ 358 (501)
T 1wle_A 307 CSSTCYRAETDTGKEPWGLYRVH--HFTKVEMFGVTGPGLEQSSELLEEFLSLQ 358 (501)
T ss_dssp EEEEEECCCCSCC--CCSSSSCS--EEEEEEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred eccCcccCCCCCCCCCcCceeee--eeeeeeEEEEeCCcHHHHHHHHHHHHHHH
Confidence 999999999651 1224 99999999866654 78888888877544
|
| >3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0021 Score=71.32 Aligned_cols=106 Identities=15% Similarity=0.223 Sum_probs=69.2
Q ss_pred CchHHHhhhCCcEEEcCCccccccC---CC-----Cccceeecc---------CCcceeeccCHHHHHHHhccc------
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV---EG-----GSTLFSLNF---------FGEPAYLTQSSQLYLETCLPA------ 216 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~---eG-----~~~~F~~~~---------~~~~~~L~~Spqlylk~li~g------ 216 (658)
+.+++.+.+.||.||.||.|..... .| +.+.|.+.- -+.++||+-..|.-+=.+...
T Consensus 209 ~f~~d~~~~~Gy~EV~~P~lv~~el~~~sG~l~~f~eemy~v~~~g~~~~~~~~~~~l~L~PTaE~~l~~l~~~ei~s~~ 288 (522)
T 3vbb_A 209 QYALRTLGSRGYIPIYTPFFMRKEVMQEVAQLSQFDEELYKVIGKGSEKSDDNSYDEKYLIATSEQPIAALHRDEWLRPE 288 (522)
T ss_dssp HHHHHHHHHTTCEEEECCSEEEHHHHHHHSCCC-CCSCCCEEC------------CCEEECSSTHHHHHTTSTTCEECTT
T ss_pred HHHHHHHHHcCCEEEECCcccchHHHhhcCCcccCcccceEeecCCccccccccCcceeEcccCcHHHHHHHhhhecccc
Confidence 5778888899999999999964421 11 123455432 245799998777766444332
Q ss_pred -C-CcEEEEeeeeecCCCCC-------ccCcceeeeeeeEeecCCHHH--HHHHHHHHHHHH
Q psy8087 217 -L-GDVYCIAQSYRAENSRT-------RRHLAEYTHVEAECAFLTFDD--LLDKLEDLICDT 267 (658)
Q Consensus 217 -~-~rvfeI~~~FR~E~~~~-------~rHl~EFt~lE~e~a~~d~~~--~m~~~e~li~~i 267 (658)
+ =|+|++++|||+|.... -| .-||+|.|.+. |..-++ ..+..++|+...
T Consensus 289 dLPlr~~~~s~cFR~Eags~GrdtrGL~R-vhQF~kvE~~~-f~~pe~e~s~~e~e~ml~~~ 348 (522)
T 3vbb_A 289 DLPIKYAGLSTCFRQEVGSHGRDTRGIFR-VHQFEKIEQFV-YSSPHDNKSWEMFEEMITTA 348 (522)
T ss_dssp TCCEEEEEEEEEECSCCCC----CCCSSS-CSEEEEEEEEE-EECSSTTHHHHHHHHHHHHH
T ss_pred cCCeeEEEecccccCCCCcCCccCCCcce-eeeeEEEEEEE-EeCCChHHHHHHHHHHHHHH
Confidence 1 35999999999997421 12 23999999985 554433 777777776543
|
| >1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0013 Score=75.52 Aligned_cols=105 Identities=14% Similarity=0.110 Sum_probs=69.3
Q ss_pred CchHHHhhhCCcEEEcCCccccccC---CCC-----ccceeeccCCcceeeccCHHHHHHHhcc----c---C-CcEEEE
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV---EGG-----STLFSLNFFGEPAYLTQSSQLYLETCLP----A---L-GDVYCI 223 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~---eG~-----~~~F~~~~~~~~~~L~~Spqlylk~li~----g---~-~rvfeI 223 (658)
+.+|+.+.+.||.||.||+|..... .|. .+.|..+--+.+++|+--.+-..=++.. + + -|+|+|
T Consensus 279 ~~~r~~~~~~Gy~ev~tP~l~~~~l~~~sGh~~~~~~~my~~d~~~~~~~LrP~~~~~~~~~~~~~~~syr~LPlr~~~~ 358 (642)
T 1qf6_A 279 VFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSSENREYCIKPMNCPGHVQIFNQGLKSYRDLPLRMAEF 358 (642)
T ss_dssp HHHHHHHHHTTCEECCCCSEEETHHHHHHSHHHHHGGGCEEEEETTEEEEECSSSHHHHHHHHTTSCEEGGGCSEEEEEE
T ss_pred HHHHHHHHHcCCEEEECCcCccHHHHhhcCccccccccceeeecCCceEEecCCCCHHHHHHHHhhhhhccccCeEEEEe
Confidence 5788999999999999999965421 122 2345544446788998655443222221 1 2 389999
Q ss_pred eeeeecCCCCCccC----cceeeeeeeEeecCCHHHHHHHHHHHHHH
Q psy8087 224 AQSYRAENSRTRRH----LAEYTHVEAECAFLTFDDLLDKLEDLICD 266 (658)
Q Consensus 224 ~~~FR~E~~~~~rH----l~EFt~lE~e~a~~d~~~~m~~~e~li~~ 266 (658)
|+|||+|.+. .+| .-||||.|+|. |.+.+++....++++..
T Consensus 359 g~~fR~E~~g-~~~GL~R~ReF~q~d~~~-f~~~~~~~~e~~~~i~~ 403 (642)
T 1qf6_A 359 GSCHRNEPSG-SLHGLMRVRGFTQDDAHI-FCTEEQIRDEVNGCIRL 403 (642)
T ss_dssp EEEECCCCGG-GCBTTTBCSEEEEEEEEE-EECGGGHHHHHHHHHHH
T ss_pred ccEEecCCCc-cccCCceeeeEEEccEEE-EcCHHHHHHHHHHHHHH
Confidence 9999999862 122 24999999998 77766665555555543
|
| >3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0011 Score=73.13 Aligned_cols=91 Identities=11% Similarity=0.190 Sum_probs=55.8
Q ss_pred CchHHHhhhCCcEEEcCCccccc-----cCCCCcc-ceeeccC----------------CcceeeccCHHH-----HHHH
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQT-----QVEGGST-LFSLNFF----------------GEPAYLTQSSQL-----YLET 212 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~-----~~eG~~~-~F~~~~~----------------~~~~~L~~Spql-----ylk~ 212 (658)
+.+|+.|...||.||+||++-.. ..+...+ .|....- |..+.||----. +.+.
T Consensus 34 ~~l~~~~~~~Gy~~i~tP~~E~~~~~~~~G~~~ke~m~~~~d~~~~g~~~~~~~~~~~~g~~l~LRpd~T~~~aR~~~~~ 113 (465)
T 3net_A 34 DTIRRVYESYGFTPIETPAVERLEVLQAKGNQGDNIIYGLEPILPPNRQAEKDKSGDTGSEARALKFDQTVPLAAYIARH 113 (465)
T ss_dssp HHHHHHHHHTTCEECCCCSEEEHHHHHGGGCC--CBEEEEEEEC----------------CCEEECSCSHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCEEeeccccccHHHHhccCCCCccceEEEecccccccccccccccCCCCCEEEeCCCChHHHHHHHHhc
Confidence 57899999999999999998221 1122234 6644222 567888732222 2222
Q ss_pred hcc-cC-CcEEEEeeeeecCCCCCccCcceeeeeeeEeecC
Q psy8087 213 CLP-AL-GDVYCIAQSYRAENSRTRRHLAEYTHVEAECAFL 251 (658)
Q Consensus 213 li~-g~-~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~a~~ 251 (658)
... .+ -|.|++|+|||.|.... -+.-||+|+++|.-..
T Consensus 114 ~~~~~~p~r~~y~g~vfR~e~~~~-gr~Ref~Q~g~ei~G~ 153 (465)
T 3net_A 114 LNDLTFPFARYQMDVVFRGERAKD-GRFRQFRQCDIDVVGR 153 (465)
T ss_dssp GGGSCSSEEEEECCEEECBC-------CCEEEEEEEEEECS
T ss_pred ccccCCCeEEEEeccEEecCCCCC-CCcceeEEeeEEEECC
Confidence 211 12 39999999999997654 3557999999998775
|
| >4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0018 Score=71.58 Aligned_cols=92 Identities=15% Similarity=0.248 Sum_probs=60.9
Q ss_pred CchHHHhhhCCcEEEcCCccccccC---C-CC------ccceee-ccC-CcceeeccCHHHHHHHhcc--c-----CCcE
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV---E-GG------STLFSL-NFF-GEPAYLTQSSQLYLETCLP--A-----LGDV 220 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~---e-G~------~~~F~~-~~~-~~~~~L~~Spqlylk~li~--g-----~~rv 220 (658)
+.+|+.|...||.||.||+|..... . |. .+.|.+ +-- |..+.||--.-...=++++ . --|.
T Consensus 54 ~~i~~~~~~~Gy~eI~tP~le~~el~~~~~G~~~d~~~~~my~~~D~~~g~~l~LRPd~t~~~ar~~~~~~~~~~lP~r~ 133 (467)
T 4e51_A 54 ATVKSLLRAYGYQNIRTPIVEHTPLFTRGIGEVTDIVEKEMYSFVDALNGENLTLRPENTAAVVRAAIEHNMLYDGPKRL 133 (467)
T ss_dssp HHHHHHHHHTTCEECBCCSEEEHHHHHHHTCTTSHHHHHTCCEEECTTTCCEEEECSCSHHHHHHHHHHTTTTTTSCEEE
T ss_pred HHHHHHHHHcCCEEEECCccccHHHhhhccCCcccccccceEEEecCCCCCEEEeCcccHHHHHHHHHHcccccCCCEEE
Confidence 5789999999999999999964321 1 32 235644 334 6778888433222223222 1 2489
Q ss_pred EEEeeeeecCCCCCccCcceeeeeeeEeecCC
Q psy8087 221 YCIAQSYRAENSRTRRHLAEYTHVEAECAFLT 252 (658)
Q Consensus 221 feI~~~FR~E~~~~~rHl~EFt~lE~e~a~~d 252 (658)
|++|+|||+|..... +.-||||+++|.-..+
T Consensus 134 ~~~g~vfR~E~~~~g-R~ReF~Q~d~ei~g~~ 164 (467)
T 4e51_A 134 WYIGPMFRHERPQRG-RYRQFHQVGVEALGFA 164 (467)
T ss_dssp EEEEEEECCCCC----CCSEEEEEEEEEETCC
T ss_pred EEEccEEccCCCCCC-CcCceEEEEEEEEeCC
Confidence 999999999987553 4569999999986653
|
| >3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0024 Score=69.07 Aligned_cols=92 Identities=18% Similarity=0.133 Sum_probs=59.2
Q ss_pred CchHHHhhhCCcEEEcCCccccccC---CC---Cccceee-ccCCcceeeccCHHHHHHHhcc------c-CCcEEEEee
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV---EG---GSTLFSL-NFFGEPAYLTQSSQLYLETCLP------A-LGDVYCIAQ 225 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~---eG---~~~~F~~-~~~~~~~~L~~Spqlylk~li~------g-~~rvfeI~~ 225 (658)
+.+|+.|...||.||.||+|..... .| ..+.|.+ +--|..+.||--.-.-.=++++ . --|.|++|+
T Consensus 32 ~~l~~~~~~~Gy~eI~tP~lE~~el~~~~g~~~~~~my~f~D~~g~~l~LRpd~T~~~aR~~~~~~~~~~~P~r~~y~g~ 111 (400)
T 3od1_A 32 DQMTEEINLWGYDMIETPTLEYYETVGVVSAILDQQLFKLLDQQGNTLVLRPDMTAPIARLVASSLKDRAYPLRLAYQSN 111 (400)
T ss_dssp HHHHHHHHHTTCEECBCCSEEETTTHHHHSSSCGGGSCEEECTTSCEEEECSCSHHHHHHHHHHHCSSSCSCEEEEEEEE
T ss_pred HHHHHHHHHcCCEEEeCCccccHHHHhhcCCccccceEEEECCCCCEEEECCCCHHHHHHHHHhhcccCCCCeEEEEEcC
Confidence 5789999999999999999943221 01 2345644 3346677777321111112221 1 248999999
Q ss_pred eeecCCCCCccCcceeeeeeeEeecCC
Q psy8087 226 SYRAENSRTRRHLAEYTHVEAECAFLT 252 (658)
Q Consensus 226 ~FR~E~~~~~rHl~EFt~lE~e~a~~d 252 (658)
|||+|.... -+.-||+|+++|.-..+
T Consensus 112 vfR~e~~~~-gR~Ref~Q~g~ei~G~~ 137 (400)
T 3od1_A 112 VYRAQQNEG-GKPAEFEQLGVELIGDG 137 (400)
T ss_dssp EECCCC----CCCSEEEEEEEEEESCC
T ss_pred EEeCCCCCC-CCCCccEEeEEEEECCC
Confidence 999997654 35579999999987664
|
| >1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0023 Score=69.53 Aligned_cols=93 Identities=17% Similarity=0.233 Sum_probs=62.7
Q ss_pred CchHHHhhhCCcEEEcCCccccccC---C-CC------ccceee-ccCCcceeeccCHHHHHHHhcc--cC------CcE
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV---E-GG------STLFSL-NFFGEPAYLTQSSQLYLETCLP--AL------GDV 220 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~---e-G~------~~~F~~-~~~~~~~~L~~Spqlylk~li~--g~------~rv 220 (658)
+.+|+-|...||.||.||+|..... . |. .+.|.+ +--|..+.||--.-...=++.+ .. -|.
T Consensus 25 ~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~d~~~~em~~~~D~~g~~l~Lrpd~t~~~ar~~~~~~~~~~~lP~rl 104 (421)
T 1h4v_B 25 ATARKVLEAAGALELVTPIFEETQVFEKGVGAATDIVRKEMFTFQDRGGRSLTLRPEGTAAMVRAYLEHGMKVWPQPVRL 104 (421)
T ss_pred HHHHHHHHHcCCEEecccccccHHHhhhccCCcccccccceEEEECCCCCEEeeCCcchHHHHHHHHhccccccCCCeEE
Confidence 5889999999999999999964321 1 22 145544 3446778887422222222221 12 489
Q ss_pred EEEeeeeecCCCCCccCcceeeeeeeEeecCCH
Q psy8087 221 YCIAQSYRAENSRTRRHLAEYTHVEAECAFLTF 253 (658)
Q Consensus 221 feI~~~FR~E~~~~~rHl~EFt~lE~e~a~~d~ 253 (658)
|+||++||+|..... +.-||+|+++|.-..+-
T Consensus 105 ~~~g~vfR~e~p~~g-R~REf~Q~g~e~~g~~~ 136 (421)
T 1h4v_B 105 WMAGPMFRAERPQKG-RYRQFHQVNYEALGSEN 136 (421)
T ss_pred EEecCeecCCCCCCC-CcccEEEccEEEECCCC
Confidence 999999999976544 45799999999977653
|
| >3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0021 Score=68.90 Aligned_cols=92 Identities=14% Similarity=0.026 Sum_probs=57.4
Q ss_pred CchHHHhhhCCcEEEcCCccccccC---CC---C-ccceee-ccCCcceeeccC--HHHH---HHHhcc--cCCcEEEEe
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV---EG---G-STLFSL-NFFGEPAYLTQS--SQLY---LETCLP--ALGDVYCIA 224 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~---eG---~-~~~F~~-~~~~~~~~L~~S--pqly---lk~li~--g~~rvfeI~ 224 (658)
..+|+.|...||.||.||+|..... .| . .+.|.. +--|..+.||-- |.+. ...+-. .--|.|+||
T Consensus 45 ~~i~~~f~~~Gy~eI~tP~le~~el~~~~g~~~~~~~my~~~D~~g~~l~LRpd~T~~~aR~~~~~~~~~~~P~r~~y~g 124 (373)
T 3rac_A 45 TRLLSFVEDAGYEPVTSGLFEYVDTLLRARSPESSRDWIRLFDGGGDAVALRPEMTPSIARMAAPRVAAGRTPIRWCYCE 124 (373)
T ss_dssp HHHHHHHHHTTCEECCCCSEEEHHHHHTTSCTTSCCCCCBCCCCSSSCEEECSSSHHHHHHHHHHHHHTTCCCCEEEEEE
T ss_pred HHHHHHHHHcCCeEEECCceeeHHHHhhcCCccchhceEEEECCCCCEEEECCcCHHHHHHHHHhccccCCCCeEEEEEc
Confidence 5889999999999999999953321 11 2 345543 333667777632 2211 111111 136899999
Q ss_pred eeeecCCC------CCccCcceeeeeeeEeecCC
Q psy8087 225 QSYRAENS------RTRRHLAEYTHVEAECAFLT 252 (658)
Q Consensus 225 ~~FR~E~~------~~~rHl~EFt~lE~e~a~~d 252 (658)
++||+|.. .. -+.-||+|+++|.-..+
T Consensus 125 ~vfR~e~~g~~~~~~~-gR~ReF~Q~g~ei~g~~ 157 (373)
T 3rac_A 125 RVYRRTDDPASLSWAS-GKAAESTQVGIERIGEE 157 (373)
T ss_dssp EEEECC-------------CEEEEEEEEEECSSC
T ss_pred ceEccCCCcccccccC-CccceeEEeeeEEECCC
Confidence 99999976 33 35679999999986654
|
| >3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0024 Score=70.50 Aligned_cols=105 Identities=16% Similarity=0.202 Sum_probs=68.0
Q ss_pred CchHHHhhhCCcEEEcCCccccccC---CCC-----ccceeeccCCcceeeccCHHHH-----HHHhcc-----cC-CcE
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV---EGG-----STLFSLNFFGEPAYLTQSSQLY-----LETCLP-----AL-GDV 220 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~---eG~-----~~~F~~~~~~~~~~L~~Spqly-----lk~li~-----g~-~rv 220 (658)
+.+|+.|...||.||.||+|..... .|. .+.|.++.-|..++||--.+.- .+.+-. -+ -|+
T Consensus 57 ~~~~~~~~~~G~~ei~tP~l~~~~l~~~sg~~~~~~~emy~~d~~~~~l~LRP~~t~~i~~~~~~~~~s~r~~~~lP~rl 136 (471)
T 3a32_A 57 EVLAKFHARRGYYVVETPIIASTELFKVSGHIEFYRNNMYLFDIEGHEFAVKPMNCPYHILLFLNEVAKHRSKLPLPFKV 136 (471)
T ss_dssp HHHHHHHHHTTCEECCCCSEEETHHHHHTCCCTTGGGGSEEEEETTEEEEECSCSHHHHHHHHHHHHHHHGGGSCSSEEE
T ss_pred HHHHHHHHHcCCEEEECCeeeehHHhhhccCccccccceEEEecCCcEEEEccccHHHHHHHHHhhhhhccccccCCeEE
Confidence 5788899999999999999965421 232 2456555456789998554433 332211 12 489
Q ss_pred EEEeeeeecCCCC--Cc-cCcceeeeeeeEeecCCHHHHHHHHHHHHH
Q psy8087 221 YCIAQSYRAENSR--TR-RHLAEYTHVEAECAFLTFDDLLDKLEDLIC 265 (658)
Q Consensus 221 feI~~~FR~E~~~--~~-rHl~EFt~lE~e~a~~d~~~~m~~~e~li~ 265 (658)
|+||+|||+|... .. --.-||+|.|+|.-. +.++..+.+.+++.
T Consensus 137 ~~~g~vfR~E~~~~~~Gl~R~REF~Q~~~e~f~-~~~~~~de~~e~i~ 183 (471)
T 3a32_A 137 FEFGRVHRYEPSGSIYGLLRVRGFTQDDAHIIV-PGGRVIDVVYDVFE 183 (471)
T ss_dssp EEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEE-EGGGHHHHHHHHHH
T ss_pred eeccceeccCCCcccccceeEEEEEECCeEEEc-ChHHHHHHHHHHHH
Confidence 9999999999753 11 012499999999864 44445554444443
|
| >3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0032 Score=70.44 Aligned_cols=105 Identities=14% Similarity=0.258 Sum_probs=70.6
Q ss_pred CchHHHhhhCCcEEEcCCccccccC---CC-----CccceeeccCCcceeeccCHHHHHHHhccc-------C-CcEEEE
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV---EG-----GSTLFSLNFFGEPAYLTQSSQLYLETCLPA-------L-GDVYCI 223 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~---eG-----~~~~F~~~~~~~~~~L~~Spqlylk~li~g-------~-~rvfeI 223 (658)
+.+|+.+.+.||.||.||.|..... .| +.+.|++. +.++||.-..|.-+=.+... + =|+|++
T Consensus 283 ~~~~~~~~~~Gy~ev~~P~lv~~~l~~~sG~~~~f~e~mf~~~--~~~~~L~PT~E~~~~~l~~~~i~s~~~LPlr~~~~ 360 (536)
T 3err_A 283 RFAMDFMARRGFLPMTLPSYAREKAFLGTGHFPAYRDQVWAIA--ETDLYLTGTAEVVLNALHSGEILPYEALPLRYAGY 360 (536)
T ss_dssp HHHHHHHHHTTCEEEECCSEEEHHHHHHHTCTTTTGGGCCEET--TTTEEECSSTHHHHHHHTTTCEEEGGGCSEEEEEE
T ss_pred HHHHHHHHHcCCEEEeccccccHHHHHhcCCcccChhhceEec--CCCEEEccCCcHHHHHHHhcccccHhhCCeeEEEe
Confidence 5778888899999999999964421 11 22345543 36789987776654443321 2 369999
Q ss_pred eeeeecCCCCCc--c----CcceeeeeeeEeecCCH--HHHHHHHHHHHHHH
Q psy8087 224 AQSYRAENSRTR--R----HLAEYTHVEAECAFLTF--DDLLDKLEDLICDT 267 (658)
Q Consensus 224 ~~~FR~E~~~~~--r----Hl~EFt~lE~e~a~~d~--~~~m~~~e~li~~i 267 (658)
++|||+|..... + -.-||||.|.+. |..- ++..+..++++...
T Consensus 361 ~~~fR~E~gs~Gr~~~GL~RvrqF~k~e~~~-f~~pe~e~s~~~~e~~~~~~ 411 (536)
T 3err_A 361 APAFRSEAGSFGKDVRGLMRVHQFHKVEQYV-LTEASLEASDRAFQELLENA 411 (536)
T ss_dssp EEEECCCTTCTTSSCSTTSSCSEEEEEEEEE-EECSCHHHHHHHHHHHHHHH
T ss_pred cccccCCccccCCCCCCceeeeeeEEEEEEE-EECCchHHHHHHHHHHHHHH
Confidence 999999963211 1 234999999995 5543 48888777777544
|
| >1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A* | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0038 Score=67.79 Aligned_cols=93 Identities=15% Similarity=0.192 Sum_probs=63.5
Q ss_pred CchHHHhhhCCcEEEcCCccccccC---C-CC------ccceee-ccCCcceeeccCHHHHHHHhcc--c-----CCcEE
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV---E-GG------STLFSL-NFFGEPAYLTQSSQLYLETCLP--A-----LGDVY 221 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~---e-G~------~~~F~~-~~~~~~~~L~~Spqlylk~li~--g-----~~rvf 221 (658)
+.+|+-|...||.||.||+|..... . |. .+.|.+ +--|..+.||--.-...=++.+ . --|.|
T Consensus 26 ~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~d~~~~em~~~~D~~g~~l~Lrpd~t~~~aR~~~~~~~~~~~P~rl~ 105 (423)
T 1htt_A 26 GTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYTFEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLW 105 (423)
T ss_dssp HHHHHHHHTTTCEECBCCSEEEHHHHHHHHCSSSHHHHHTCEEEECTTSCEEEECSCSHHHHHHHHHHHTCSTTCCEEEE
T ss_pred HHHHHHHHHcCCEEecccccCHHHHHhhccCCchhhhhhheEEEEcCCCCEEEeCCCchHHHHHHHHhcccccCCCeEEE
Confidence 5889999999999999999964321 1 22 245654 3456778887422222222222 1 24899
Q ss_pred EEeeeeecCCCCCccCcceeeeeeeEeecCCH
Q psy8087 222 CIAQSYRAENSRTRRHLAEYTHVEAECAFLTF 253 (658)
Q Consensus 222 eI~~~FR~E~~~~~rHl~EFt~lE~e~a~~d~ 253 (658)
+||++||+|..... +.-||+|+++|.-..+-
T Consensus 106 ~~g~vfR~e~p~~g-R~Ref~Q~d~e~~g~~~ 136 (423)
T 1htt_A 106 YIGPMFRHERPQKG-RYRQFHQLGCEVFGLQG 136 (423)
T ss_dssp EEEEEECCCCCCSS-CCSEEEEEEEEEESCCS
T ss_pred EEcCEecCCCCCCC-ccceeEEeeEEEECCCC
Confidence 99999999976554 45799999999987653
|
| >1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C* | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0052 Score=62.97 Aligned_cols=86 Identities=14% Similarity=0.096 Sum_probs=57.6
Q ss_pred chH--HHhhhCCcEEEcCCccccccCCCCccceeeccCCcceeecc--CHHHHHHHhcc-c-C-CcEEEEeeeeecCCCC
Q psy8087 161 YPP--EVSLANGIAKVTPPTLVQTQVEGGSTLFSLNFFGEPAYLTQ--SSQLYLETCLP-A-L-GDVYCIAQSYRAENSR 233 (658)
Q Consensus 161 ~iR--~fl~~~gF~EV~TPiL~~~~~eG~~~~F~~~~~~~~~~L~~--Spqlylk~li~-g-~-~rvfeI~~~FR~E~~~ 233 (658)
.+| +.|...||.||.||+|-....=.. +.| .+--|..+.||- .|.+-...+-. . . -|.|++|+|||.|.+.
T Consensus 9 ~~r~~~~~~~~Gy~eI~tP~le~~~l~~~-d~f-~d~~g~~l~LRpd~T~~~a~~~~~~~~~~p~R~~y~g~vfR~e~~~ 86 (275)
T 1usy_A 9 VFSFYSKATKKGFSPFFVPALEKAEEPAG-NFF-LDRKGNLFSIREDFTKTVLNHRKRYSPDSQIKVWYADFVYRYSGSD 86 (275)
T ss_dssp HHHHHHHHHHTTCEECCCCSEEECSSCCS-SCE-EETTSCEEEECCCHHHHHHHHHTTCTTCCCEEEECCEEEEEEETTE
T ss_pred HHHHHHHHHHCCCEEecCccccchhhhcc-ccc-CCCCCCEEEeCCcChHHHHHHHhhcCCCCceEEEEeceEEecCCCC
Confidence 445 999999999999999964332111 234 234467777872 23333222221 2 2 4899999999999864
Q ss_pred CccCcceeeeeeeEeecCC
Q psy8087 234 TRRHLAEYTHVEAECAFLT 252 (658)
Q Consensus 234 ~~rHl~EFt~lE~e~a~~d 252 (658)
. -||||+++|.-..+
T Consensus 87 ~----Ref~Q~g~ei~g~~ 101 (275)
T 1usy_A 87 L----VAEYQLGLEKVPRN 101 (275)
T ss_dssp E----EEEEEEEEEEESCC
T ss_pred C----CeeeEeCEEEecCC
Confidence 3 69999999997663
|
| >2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=96.59 E-value=0.014 Score=51.54 Aligned_cols=90 Identities=17% Similarity=0.146 Sum_probs=66.3
Q ss_pred eecccCCccCCcEEEEEEEEEee---e----cCC--CceEEEEEEeCCEEEEEEEcCCccchHHhccCCCCcEEEEEEEE
Q psy8087 502 IKIKDGEKYRDKRVTIFGWVHRL---R----RQG--KGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRI 572 (658)
Q Consensus 502 ~~i~~~~~~~g~~V~v~GwI~~~---R----~~G--kkl~Fi~Lrd~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v 572 (658)
.+|.++. .|+.|.+.|.|.++ | ..| +++.++.|.|++|.|.+.+-..... ....|..|++|.|+|.+
T Consensus 8 ~~I~~L~--~g~~v~i~~~V~~~~~~~~~~~k~G~~~~~~~~~l~D~TG~I~~t~w~~~~~--~~~~l~~G~vv~i~g~~ 83 (115)
T 2k50_A 8 DTISKLE--EGAETPVTGRVMKISSPRTFTTRKGREGKLANVIIADDTGELRAVFWTENIK--LLKKFREGDVIRIKDVN 83 (115)
T ss_dssp CCTTTCC--TTCEEEEEEEEEEECCCEECCCTTSSCCEEEEEEEEETTEEEEEEEETTGGG--GGGTCCTTSEEEEEEEE
T ss_pred EEHHHCC--CCCEeEEEEEEEECCCceEEEcCCCCEEEEEEEEEEeCCCeEEEEEeCchhh--hhhcCCCCCEEEEEeeE
Confidence 4466554 58899999999988 2 345 5789999999999999988654322 23579999999999988
Q ss_pred EecCCCCCCCCceEEEEEEEEEEecCC
Q psy8087 573 EKVPEGKSAPGGHELKVDYWEVVGLAP 599 (658)
Q Consensus 573 ~~~~~~~~~~g~~El~~~~i~vls~~~ 599 (658)
.+.. =.|.++|.+.....+.+++
T Consensus 84 v~~~----f~g~~qL~~~~~~~i~~~~ 106 (115)
T 2k50_A 84 IRGG----FGGRKEAHLMPRSTVEVLD 106 (115)
T ss_dssp ECCC----SSSSCEEEECTTCCEEEES
T ss_pred Eccc----cCCeEEEEECCCceEEECC
Confidence 5431 1467888887776666653
|
| >3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0058 Score=67.22 Aligned_cols=92 Identities=16% Similarity=0.157 Sum_probs=58.9
Q ss_pred CchHHHhhhCCcEEEcCCccccccC---C-CC---ccceee-ccCCcceeeccCHHHHHHHhcc--c-----CCcEEEEe
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV---E-GG---STLFSL-NFFGEPAYLTQSSQLYLETCLP--A-----LGDVYCIA 224 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~---e-G~---~~~F~~-~~~~~~~~L~~Spqlylk~li~--g-----~~rvfeI~ 224 (658)
..+|+.|...||.||.||+|..... . |. .+.|.. +--|..+.||--.-.-.=++++ . --|.|+||
T Consensus 51 ~~i~~~~~~~Gy~eI~tP~lE~~el~~~~~G~~~~~~my~f~D~~g~~l~LRpd~T~~~aR~~~~~~~~~~~P~r~~y~g 130 (456)
T 3lc0_A 51 DVFHATAKTFGFEEYDAPVLESEELYIRKAGEEITEQMFNFITKGGHRVALRPEMTPSLARLLLGKGRSLLLPAKWYSIP 130 (456)
T ss_dssp HHHHHHHHHTTCEECCCCSEEEGGGGCCCSCCHHHHTCEEEECSSSCEEEECSCSHHHHHHHHHHSCTTCCSSEEEEECC
T ss_pred HHHHHHHHHCCCEEEECCcEeehhhhccccccchhhceEEEEcCCCCEEecCCcCHHHHHHHHHhcCcccCCCEEEEEec
Confidence 5789999999999999999854432 1 22 235543 3346677777322111222222 1 24799999
Q ss_pred eeeecCCCCCccCcceeeeeeeEeecCC
Q psy8087 225 QSYRAENSRTRRHLAEYTHVEAECAFLT 252 (658)
Q Consensus 225 ~~FR~E~~~~~rHl~EFt~lE~e~a~~d 252 (658)
+|||+|.... -+.-||+|+++|.-..+
T Consensus 131 ~vfR~e~~~~-gR~ReF~Q~g~ei~G~~ 157 (456)
T 3lc0_A 131 QCWRYEAITR-GRRREHYQWNMDIVGVK 157 (456)
T ss_dssp EEECCCC------CCEEEEEEEEEESCC
T ss_pred cEEecCCCCC-CCccceEEEEEEEEcCC
Confidence 9999998755 35679999999987653
|
| >1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A* | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0072 Score=67.32 Aligned_cols=48 Identities=17% Similarity=0.203 Sum_probs=36.5
Q ss_pred CcEEEEeeeeecCCCCCccC----cceeeeeeeEeecCCHHHHHHHHHHHHHHHH
Q psy8087 218 GDVYCIAQSYRAENSRTRRH----LAEYTHVEAECAFLTFDDLLDKLEDLICDTV 268 (658)
Q Consensus 218 ~rvfeI~~~FR~E~~~~~rH----l~EFt~lE~e~a~~d~~~~m~~~e~li~~i~ 268 (658)
=|+|+||+|||+|-. + +| .=||+|.|+| .|.+.++..+..++++....
T Consensus 210 ~rl~qig~~FR~E~~-p-r~GL~R~REF~q~d~~-~f~~~e~~~~~~~~~i~~~~ 261 (505)
T 1ati_A 210 FGIAQIGKAFRNEIT-P-RNFIFRVREFEQMEIE-YFVRPGEDEYWHRYWVEERL 261 (505)
T ss_dssp EEEEEEEEEEBCCSS-C-CTGGGSCSEEEEEEEE-EEECGGGHHHHHHHHHHHHH
T ss_pred EEEEEeeceeeCCCC-C-CCCCCcccceEEeeEE-EEECHHHHHHHHHHHHHHHH
Confidence 379999999999932 2 32 2499999999 88888888777776665443
|
| >3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.08 E-value=0.14 Score=44.57 Aligned_cols=88 Identities=25% Similarity=0.243 Sum_probs=65.3
Q ss_pred eeecccCCccCCcEEEEEEEEEeee-------cCCC--ceEEEEEEeCCEEEEEEEcCCccchHHhccCCCCcEEEEEEE
Q psy8087 501 RIKIKDGEKYRDKRVTIFGWVHRLR-------RQGK--GLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGR 571 (658)
Q Consensus 501 ~~~i~~~~~~~g~~V~v~GwI~~~R-------~~Gk--kl~Fi~Lrd~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~ 571 (658)
+.+|.++.. +..|.|.|+|.++. ..|+ ++.=+.|.|++|.|.+++=.+... . .+.+||+|.|.|.
T Consensus 5 ~~~I~dL~~--~~~v~v~g~V~~~~~~r~~~~~~G~~~~v~~~~l~D~TG~IrvtlW~~~a~---~-~l~~Gdvv~i~g~ 78 (105)
T 3dm3_A 5 TYNIGELSP--GMTATFEGEVISALPIKEFKRADGSIGKLKSFIVRDETGSIRVTLWDNLTD---I-DVGRGDYVRVRGY 78 (105)
T ss_dssp EECGGGCCS--SEEEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEETTEEEEEEEEGGGGG---S-CCCTTCEEEEEEE
T ss_pred ceEHHHCCC--CCeEEEEEEEEECCCceEEEcCCCCeeEEEEEEEECCCCcEEEEEECcccc---c-ccCCCCEEEEEEE
Confidence 345666654 47899999998763 2332 355589999999998887543221 1 7999999999999
Q ss_pred EEecCCCCCCCCceEEEEEEEEEEecCC
Q psy8087 572 IEKVPEGKSAPGGHELKVDYWEVVGLAP 599 (658)
Q Consensus 572 v~~~~~~~~~~g~~El~~~~i~vls~~~ 599 (658)
+.... .|++||.+.....+.+|.
T Consensus 79 vk~~~-----~g~~eL~~g~~~~i~~~~ 101 (105)
T 3dm3_A 79 IREGY-----YGGLECTANYVEILKKGE 101 (105)
T ss_dssp EEECT-----TSSEEEEEEEEEEEECCC
T ss_pred EEEcc-----CCCEEEEeCCceEEEecc
Confidence 86643 478999999999999884
|
| >4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.90 E-value=0.027 Score=61.68 Aligned_cols=90 Identities=20% Similarity=0.207 Sum_probs=56.7
Q ss_pred CchHHHhhhCCcEEEcCCcccccc---CCCC---ccceee-ccCCcceeeccCHHHHHH--Hhcc--c--CCcEEEEeee
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQ---VEGG---STLFSL-NFFGEPAYLTQSSQLYLE--TCLP--A--LGDVYCIAQS 226 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~---~eG~---~~~F~~-~~~~~~~~L~~Spqlylk--~li~--g--~~rvfeI~~~ 226 (658)
+.+|+.|...||.||.||+|.... ...| -+.|.. +--|..+.||- ++-.. ++++ . --|.|+||++
T Consensus 36 ~~~~~~~~~~Gy~eI~tP~le~~el~~~~~g~~~~~~y~f~D~~g~~l~LRP--d~T~~~aR~~~~~~~~p~k~~y~g~v 113 (464)
T 4g84_A 36 DVIIRCFKRHGAEVIDTPVFELKETLMGKYGEDSKLIYDLKDQGGELLSLRY--DLTVPFARYLAMNKLTNIKRYHIAKV 113 (464)
T ss_dssp HHHHHHHHHTTCEECBCCSEEEHHHHTTSCC----CCCBBCCCSSCCEEECS--CSHHHHHHHHHHTTCSCEEEEEEEEE
T ss_pred HHHHHHHHHCCCeEEECcccCcHHHhccccCcCcceeEEEECCCCCEEEeCC--cCcHHHHHHHHhcCCCCceeEEEecc
Confidence 578999999999999999994321 1111 124432 33467788873 33221 2222 2 2478999999
Q ss_pred eecCCCCC-ccCcceeeeeeeEeecC
Q psy8087 227 YRAENSRT-RRHLAEYTHVEAECAFL 251 (658)
Q Consensus 227 FR~E~~~~-~rHl~EFt~lE~e~a~~ 251 (658)
||.|.... .-+.-||+|+++|.-..
T Consensus 114 fR~erp~~~~gR~Ref~Q~g~ei~G~ 139 (464)
T 4g84_A 114 YRRDNPAMTRGRYREFYQCDFDIAGN 139 (464)
T ss_dssp ECCCC------CCSEEEEEEEEEESC
T ss_pred eeccCCccccCccceeeecceeccCC
Confidence 99996532 12456999999998753
|
| >3kf6_A Protein STN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=95.69 E-value=0.089 Score=49.31 Aligned_cols=78 Identities=21% Similarity=0.244 Sum_probs=61.5
Q ss_pred cEEEEEEEEEeeecCCCceEEEEEEeCCE-EEEEEEcCCccc-h-HHhccCCCCcEEEEEEEEEecCCCCCCCCceEEEE
Q psy8087 513 KRVTIFGWVHRLRRQGKGLMFVTLRDGSG-FIQCVLADILCQ-T-EHALLLSTESSVQFRGRIEKVPEGKSAPGGHELKV 589 (658)
Q Consensus 513 ~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~-~iQvv~~~~~~~-~-~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~El~~ 589 (658)
+.|+|.|.|.+++... +-..+.|-|++| .|.|++-.+... . .....+..|++|.|.|.+..- .|+.+|.+
T Consensus 48 ~~V~IvGiVv~~~~~~-~~~~ytIDD~TG~~I~cv~w~~~~~~~~~~~~~l~~G~~VrV~G~v~~f------r~~rqI~~ 120 (159)
T 3kf6_A 48 RWIQIVGYIAAIDIYE-GKHVLTVDDCSGMVLRVVFIIQDDFSMSKRAISMSPGNVVCVFGKINSF------RSEVELIA 120 (159)
T ss_dssp CEEEEEEEEEEEEEET-TEEEEEEECSSSCEEEEEEEGGGCHHHHHHHTTCCTTCEEEEEEEEECS------SSSCEEEE
T ss_pred EEEEEEEEEEEEEEeC-CEEEEEEecCCCCeEEEEEEccCCCCcccccccCCCCCEEEEEEEEEee------CCEEEEEE
Confidence 5689999999999886 567889999999 599998754321 1 223358999999999999532 47889999
Q ss_pred EEEEEEec
Q psy8087 590 DYWEVVGL 597 (658)
Q Consensus 590 ~~i~vls~ 597 (658)
.++.++..
T Consensus 121 ~~i~~v~d 128 (159)
T 3kf6_A 121 QSFEELRD 128 (159)
T ss_dssp EEEEEECS
T ss_pred EEEEECCC
Confidence 99998774
|
| >3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A | Back alignment and structure |
|---|
Probab=95.63 E-value=0.18 Score=43.00 Aligned_cols=84 Identities=21% Similarity=0.201 Sum_probs=59.9
Q ss_pred ecccCCccCCcEEEEEEEEEeee---c----CCC--ceEEEEEEeCCEEEEEEEcCCccchHHhccCCCCcEEEEEEEEE
Q psy8087 503 KIKDGEKYRDKRVTIFGWVHRLR---R----QGK--GLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIE 573 (658)
Q Consensus 503 ~i~~~~~~~g~~V~v~GwI~~~R---~----~Gk--kl~Fi~Lrd~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~ 573 (658)
+|.++.. |..|.|.|+|.++- . .|+ ++.=+.|.|++|.|.+.+=.+... . .+..||+|.|.|.+.
T Consensus 4 kI~dl~~--g~~v~i~~~V~~~~~~r~~~~~~G~~~~v~~~~l~DeTG~I~~tlW~~~~~---~-~i~~Gdvv~i~g~v~ 77 (97)
T 3e0e_A 4 KISELMP--NLSGTINAEVVTAYPKKEFSRKDGTKGQLKSLFLKDDTGSIRGTLWNELAD---F-EVKKGDIAEVSGYVK 77 (97)
T ss_dssp CGGGCCT--TEEEEEEEEEEEECCCEEEC----CCEEEEEEEEEETTEEEEEEEEGGGGG---C-CCCTTCEEEEEEEEE
T ss_pred EHHHCCC--CCcEEEEEEEEECCCceEEEcCCCCeeEEEEEEEECCCCcEEEEEECCccc---c-ccCCCCEEEEEEEEE
Confidence 4555543 47899999998763 2 332 356688999999999887543221 1 699999999999885
Q ss_pred ecCCCCCCCCceEEEEEEEEEEecC
Q psy8087 574 KVPEGKSAPGGHELKVDYWEVVGLA 598 (658)
Q Consensus 574 ~~~~~~~~~g~~El~~~~i~vls~~ 598 (658)
.- .+.+||.+.+...+.+|
T Consensus 78 ~~------~~~~el~~g~~~~i~k~ 96 (97)
T 3e0e_A 78 QG------YSGLEISVDNIGIIEKS 96 (97)
T ss_dssp EC--------CEEEEEEEEEEEECC
T ss_pred Ec------CCeEEEEECCCcEEEEC
Confidence 43 46899999999888776
|
| >4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.52 E-value=0.031 Score=62.35 Aligned_cols=90 Identities=20% Similarity=0.207 Sum_probs=55.7
Q ss_pred CchHHHhhhCCcEEEcCCcccccc---CCCC---ccceee-ccCCcceeeccCHHHHHH--Hhcc--c--CCcEEEEeee
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQ---VEGG---STLFSL-NFFGEPAYLTQSSQLYLE--TCLP--A--LGDVYCIAQS 226 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~---~eG~---~~~F~~-~~~~~~~~L~~Spqlylk--~li~--g--~~rvfeI~~~ 226 (658)
+.+|+.|...||.||.||+|.... ...| -..|.. +--|..+.||- ++-.. ++++ . --|.|+||++
T Consensus 89 ~~i~~~~~~~Gy~eI~tP~lE~~el~~~~~ge~~~~my~f~D~~g~~l~LRP--d~T~~~aR~~~~~~~~p~k~yyig~v 166 (517)
T 4g85_A 89 DVIIRCFKRHGAEVIDTPVFELKETLMGKYGEDSKLIYDLKDQGGELLSLRY--DLTVPFARYLAMNKLTNIKRYHIAKV 166 (517)
T ss_dssp HHHHHHHHHHTCEECBCCSEEEHHHHHCC------CSCBBCCTTSCCEEECS--CSHHHHHHHHHHTTCSCEEEEEEEEE
T ss_pred HHHHHHHHHCCCeEEECcccCcHHHhhcccCcCcceeEEEECCCCCEEEeCC--cCcHHHHHHHHhCCCCCceeEEEece
Confidence 588999999999999999994321 1111 123432 33467788873 33211 2222 2 2478999999
Q ss_pred eecCCCCC-ccCcceeeeeeeEeecC
Q psy8087 227 YRAENSRT-RRHLAEYTHVEAECAFL 251 (658)
Q Consensus 227 FR~E~~~~-~rHl~EFt~lE~e~a~~ 251 (658)
||.|.... .=+.=||+|+++|.-..
T Consensus 167 fR~Erp~~~~GR~ReF~Q~g~ei~G~ 192 (517)
T 4g85_A 167 YRRDNPAMTRGRYREFYQCDFDIAGN 192 (517)
T ss_dssp ECCCC-------CCEEEEEEEEEESC
T ss_pred EeccCcccccCccceeeeeceeccCC
Confidence 99996522 11446999999998764
|
| >2kqr_A Asparaginyl-tRNA synthetase, cytoplasmic; aminoacyl-tRNA synthetase, ATP-binding, ligas nucleotide-binding, protein biosynthesis; NMR {Brugia malayi} | Back alignment and structure |
|---|
Probab=95.51 E-value=0.00013 Score=64.16 Aligned_cols=54 Identities=33% Similarity=0.319 Sum_probs=45.2
Q ss_pred HHHhhhhhhhhhhhccchhHHHHHhh---hhHHHHHHHHhHHHHHhcccCCCCCCCc
Q psy8087 445 IAKAQLKKVSKLAARDNAKSESKAKK---EEEDAEKREKNLEEAKKIVLKEDPSLPP 498 (658)
Q Consensus 445 ~~k~~lk~~~K~~~~~~~k~~k~~~k---~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 498 (658)
+++++||+++|.+++..+|++|++++ ++++++.|+++|++++++.+.+|+|+|.
T Consensus 56 ~skSaLKKa~K~~~~~~kK~~k~~~~~~~e~~~~~~r~~~LEEAkkIvieeD~SLP~ 112 (113)
T 2kqr_A 56 ASKTALKKSWKRYEQEMLKNEKVAAKMLEKDATEVGVKAALEEAKKVQIELDTSLSY 112 (113)
T ss_dssp CCHHHHHHHHHHHHHHHHHTCTTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCSC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCEeecCCCCCC
Confidence 57899999999999998887777654 3335577888999999999999999985
|
| >3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B | Back alignment and structure |
|---|
Probab=95.43 E-value=0.11 Score=47.08 Aligned_cols=78 Identities=13% Similarity=0.080 Sum_probs=57.1
Q ss_pred cEEEEEEEEEeeecCCCceEEEEEEeCCE-EEEEEEcCCccch-HHhccCCCCcEEEEEEEEEecCCCCCCCCceEEEEE
Q psy8087 513 KRVTIFGWVHRLRRQGKGLMFVTLRDGSG-FIQCVLADILCQT-EHALLLSTESSVQFRGRIEKVPEGKSAPGGHELKVD 590 (658)
Q Consensus 513 ~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~-~iQvv~~~~~~~~-~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~El~~~ 590 (658)
..|++-|+|.++..... -.-+.|.|++| .|.|..=.+.... .....+..|+.|.|.|.+..- .|...|.+.
T Consensus 32 ~~V~iVG~V~~~~~~~~-~~~~~ldD~TG~~I~~~~W~~~~~~~~~~~~~~~g~yVrV~G~l~~f------~g~~qi~~~ 104 (132)
T 3kdf_D 32 SQVTIVGIIRHAEKAPT-NIVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPPETYVKVAGHLRSF------QNKKSLVAF 104 (132)
T ss_dssp CEEEEEEEEEEEEECSS-EEEEEEECSSSSCEEEEEEC---------CCCCTTCEEEEEEEEEEE------TTEEEEEEE
T ss_pred EEEEEEEEEEEEEEcCC-eEEEEEECCCCCEEEEEEEccCCCcccccccccCCCEEEEEEEEEeE------CCEEEEEEE
Confidence 46999999999998864 55579999999 8999885432211 234579999999999999653 366788888
Q ss_pred EEEEEec
Q psy8087 591 YWEVVGL 597 (658)
Q Consensus 591 ~i~vls~ 597 (658)
.+..+..
T Consensus 105 ~ir~v~d 111 (132)
T 3kdf_D 105 KIMPLED 111 (132)
T ss_dssp EEEECSS
T ss_pred EEEEcCC
Confidence 8876654
|
| >3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A* | Back alignment and structure |
|---|
Probab=95.37 E-value=0.023 Score=59.60 Aligned_cols=108 Identities=19% Similarity=0.140 Sum_probs=70.9
Q ss_pred CchHHHhhhCCcEEEcCCccccccC-C--CC-----ccceeeccC-------------------------CcceeeccCH
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV-E--GG-----STLFSLNFF-------------------------GEPAYLTQSS 206 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~-e--G~-----~~~F~~~~~-------------------------~~~~~L~~Sp 206 (658)
+.+|+ ..+.||.||.||.|..... + |- -..|.+.-| +.++||.-..
T Consensus 72 ~~~~~-~~~~Gy~ev~~P~lv~~~~~e~SGhl~~F~e~mf~v~~~~~d~~e~~~ll~~~~~~~~~~~~l~~~d~~LiPta 150 (346)
T 3mf2_A 72 ALITS-HREAGTEALRFPPVMSRAQLEKSGYLKSFPNLLGCVCGLHGTEREINAAVSRFDAGGDWTTSLSPADLVLSPAA 150 (346)
T ss_dssp HHHHH-TCCTTCEEEECCSEEEHHHHHHTTHHHHCGGGCEEEEEECSCHHHHHHHHHHHHTTSCGGGGEEEEEEEECSSS
T ss_pred HHHHh-hHhcCCeEEECCCccCHHHHHhcCCcccChhhcceeecccccchhhhhhhhhhccccccccccCCCCEEEcccc
Confidence 46677 7788999999999964421 1 11 112333221 2368887666
Q ss_pred HHHHHH------hcc-cCCcEEEEeeeeecCCCCCccCcceeeeeeeEeecCCHHHHHHHHHHHHHHHHH
Q psy8087 207 QLYLET------CLP-ALGDVYCIAQSYRAENSRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVD 269 (658)
Q Consensus 207 qlylk~------li~-g~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~a~~d~~~~m~~~e~li~~i~~ 269 (658)
+..+=. .+. .--|+-++|+|||.|.+.+--..-+|||.|+-. |.+.+++.+..|+|+..+..
T Consensus 151 cvpl~~~~~~eg~i~~~plr~~~~g~CFR~EaS~GL~RvhqF~kvE~v~-~~tpEqs~~e~e~l~~~ae~ 219 (346)
T 3mf2_A 151 CYPVYPIAASRGPLPKGGLRFDVAADCFRREPSKHLDRLQSFRMREYVC-IGTPDDVSDFRERWMVRAQA 219 (346)
T ss_dssp STTHHHHHHTTCSCCTTCEEEEEEEEEECCCCCSSTTSCSEEEEEEEEE-EESHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHccCCcccccCeEEEEECCccCCcCCCCCeeeeeeEEEEEEE-EeCHHHHHHHHHHHHHHHHH
Confidence 543332 222 223567799999999865545556999998865 46899999999998876543
|
| >3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.30 E-value=0.049 Score=59.53 Aligned_cols=91 Identities=13% Similarity=0.064 Sum_probs=53.6
Q ss_pred CC-cEEEcCCccccccCCCCccceeeccCCcceeecc--CHHHHHHH--hcccC-----CcEEEEeeeeecCCC-CCccC
Q psy8087 169 NG-IAKVTPPTLVQTQVEGGSTLFSLNFFGEPAYLTQ--SSQLYLET--CLPAL-----GDVYCIAQSYRAENS-RTRRH 237 (658)
Q Consensus 169 ~g-F~EV~TPiL~~~~~eG~~~~F~~~~~~~~~~L~~--Spqlylk~--li~g~-----~rvfeI~~~FR~E~~-~~~rH 237 (658)
+| +.||.||+...-...|.-+-| . +|||- +|-.+... .+... =++.|||+|||||.. .+.+|
T Consensus 122 ~~~~~eV~tp~~~~~~~SGH~d~~-----~--~~LRPeTaqg~~~nfk~~~~s~r~~LP~~iaqig~~FR~E~g~~~~~~ 194 (459)
T 3ikl_A 122 REQVFPVDALHHKPGPLLPGDSAF-----R--GGLRENLLHGALEHYVNCLDLVNKRLPYGLAQIGVCFHPVFDTKQIRN 194 (459)
T ss_dssp SCSCEECCCCSBCCSCCCSSCSCC-----T--TB-CSCSHHHHHHHTTTTTGGGTTBSSEEEEEEEEEECCC--------
T ss_pred cCceEeeccccccccccCcchhhh-----c--ceECCCCChhHHHHHhhhhhhccccCCeEEEEEeeeeecccccccCCC
Confidence 55 788999996543333443333 3 78885 33333331 22122 259999999999941 12233
Q ss_pred ----cceeeeeeeEeecCCHHHHHHHHHHHHHHH
Q psy8087 238 ----LAEYTHVEAECAFLTFDDLLDKLEDLICDT 267 (658)
Q Consensus 238 ----l~EFt~lE~e~a~~d~~~~m~~~e~li~~i 267 (658)
.-||||.|++ -|.+-++..+..+.++..+
T Consensus 195 GL~RvrEFtq~E~~-~F~~Pe~~~e~~~~~~~~~ 227 (459)
T 3ikl_A 195 GVKSIGEKTEASLV-WFTPPRTSNQWLDFWLRHR 227 (459)
T ss_dssp --CCCCEEEEEEEE-EEECGGGHHHHHHHHHHHH
T ss_pred CcccccceeeeeEE-EEeChhHHHHHHHHHHHHH
Confidence 2599999998 4678777776666665544
|
| >4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis} | Back alignment and structure |
|---|
Probab=95.11 E-value=0.16 Score=46.09 Aligned_cols=79 Identities=14% Similarity=0.098 Sum_probs=57.8
Q ss_pred CcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCccc--hHHhccCCCCcEEEEEEEEEecCCCCCCCCceEEEE
Q psy8087 512 DKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILCQ--TEHALLLSTESSVQFRGRIEKVPEGKSAPGGHELKV 589 (658)
Q Consensus 512 g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~~~--~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~El~~ 589 (658)
=..|++-|+|.+++... .-.-+.|.|++|.|.|..=.+... ......+..|+.|.|.|.+..- .|...|.+
T Consensus 36 i~~V~iVG~V~~~~~~~-~~~~~~ldD~TG~I~~~~W~~~~~~~~~~~~~~~~g~yVrV~G~v~~f------~g~~qi~~ 108 (136)
T 4gop_B 36 LGQLTFVAVVRNISRNA-TNVAYSVEDGTGQIEVRQWLDSSSDDSSKASEIRNNVYVRVLGTLKSF------QNRRSISS 108 (136)
T ss_dssp CCEEEEEEEEEEEEECS-SEEEEEEECSSCEEEEEEECC--------CCSCCTTCEEEEEEEEEEE------TTEEEEEE
T ss_pred EEEEEEEEEEEEEEecC-CeEEEEEECCCCCEEEEEecccCCcccccccccCCCCEEEEEEEEEEe------CCEEEEEE
Confidence 35799999999998876 455579999999999887543221 1235679999999999999653 35678888
Q ss_pred EEEEEEec
Q psy8087 590 DYWEVVGL 597 (658)
Q Consensus 590 ~~i~vls~ 597 (658)
..+..+..
T Consensus 109 ~~ir~v~d 116 (136)
T 4gop_B 109 GHMRPVID 116 (136)
T ss_dssp SEEEECSS
T ss_pred EEEEECCC
Confidence 88876543
|
| >1nnx_A Protein YGIW; structural genomics, hypothetical protein, OB-fold, structure 2 function project, S2F, unknown function; 1.45A {Escherichia coli} SCOP: b.40.10.1 | Back alignment and structure |
|---|
Probab=95.05 E-value=0.16 Score=44.44 Aligned_cols=74 Identities=19% Similarity=0.223 Sum_probs=56.1
Q ss_pred ccCCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCccchHHh-ccCCCCcEEEEEEEEEecCCCCCCCCceEE
Q psy8087 509 KYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILCQTEHA-LLLSTESSVQFRGRIEKVPEGKSAPGGHEL 587 (658)
Q Consensus 509 ~~~g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~~~~~~~-~~L~~gs~V~V~G~v~~~~~~~~~~g~~El 587 (658)
-..+..|+|.|.|.+.-..-+ +.++|++|.|+|-++.+. |. ..+++++-|.|.|.+-+.- ...||
T Consensus 34 ~~Dd~~V~L~G~Iv~~~~~d~----Y~F~D~TG~I~VeId~~~----w~g~~v~p~~~Vri~GevDkd~------~~~eI 99 (109)
T 1nnx_A 34 LRDDTWVTLRGNIVERISDDL----YVFKDASGTINVDIDHKR----WNGVTVTPKDTVEIQGEVDKDW------NSVEI 99 (109)
T ss_dssp SCSSEEEEEEEEEEEEEETTE----EEEEETTEEEEEECCGGG----STTCCCCTTSCEEEEEEEEEET------TEEEE
T ss_pred CcCCCeEEEEEEEEEEeCCCe----EEEECCCccEEEEEChhh----cCCcccCCCCEEEEEEEECCCC------CceEE
Confidence 446789999999987643322 789999999999987531 22 3689999999999996422 34699
Q ss_pred EEEEEEEEe
Q psy8087 588 KVDYWEVVG 596 (658)
Q Consensus 588 ~~~~i~vls 596 (658)
.|+.|++|.
T Consensus 100 dV~~i~~~~ 108 (109)
T 1nnx_A 100 DVKQIRKVN 108 (109)
T ss_dssp EEEEEEEC-
T ss_pred EEEEEEEcc
Confidence 999999875
|
| >2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=94.61 E-value=0.17 Score=44.39 Aligned_cols=62 Identities=10% Similarity=-0.004 Sum_probs=48.4
Q ss_pred CCcEEEEeEEeecc-------eecC--CCeEEEEEEcCCeEEEEEEecccchhhhhhcCCCccEEEEEEEeEe
Q psy8087 69 IITNINIPAIPGPP-------AIPG--KGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEK 132 (658)
Q Consensus 69 ~~~~v~~~Grv~~~-------r~~g--k~l~Fi~LrD~~~~iQvv~~~~~~~~~~~~~l~~es~V~v~G~l~~ 132 (658)
.|+.|++.|+|.++ ++.| +.+.++.|.|++|.|.+.+-.+....+ ..+..|++|.++|.+..
T Consensus 15 ~g~~v~i~~~V~~~~~~~~~~~k~G~~~~~~~~~l~D~TG~I~~t~w~~~~~~~--~~l~~G~vv~i~g~~v~ 85 (115)
T 2k50_A 15 EGAETPVTGRVMKISSPRTFTTRKGREGKLANVIIADDTGELRAVFWTENIKLL--KKFREGDVIRIKDVNIR 85 (115)
T ss_dssp TTCEEEEEEEEEEECCCEECCCTTSSCCEEEEEEEEETTEEEEEEEETTGGGGG--GTCCTTSEEEEEEEEEC
T ss_pred CCCEeEEEEEEEECCCceEEEcCCCCEEEEEEEEEEeCCCeEEEEEeCchhhhh--hcCCCCCEEEEEeeEEc
Confidence 46788999999886 2345 568999999999999998876543222 36899999999999854
|
| >3au7_A TIAS, putative uncharacterized protein; ATP hydrolysis, RNA binding protein; 2.60A {Archaeoglobus fulgidus} PDB: 3amt_A* 3amu_A* | Back alignment and structure |
|---|
Probab=94.37 E-value=0.33 Score=51.95 Aligned_cols=79 Identities=19% Similarity=0.233 Sum_probs=63.2
Q ss_pred cCCcEEEEEEEEEee-ecCCCceEEEEEEeCCEEEEEEEcCCccch-HHhccCCCCcEEEEEEEEEecCCCCCCCCceEE
Q psy8087 510 YRDKRVTIFGWVHRL-RRQGKGLMFVTLRDGSGFIQCVLADILCQT-EHALLLSTESSVQFRGRIEKVPEGKSAPGGHEL 587 (658)
Q Consensus 510 ~~g~~V~v~GwI~~~-R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~~~~-~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~El 587 (658)
.....++|.|.|.+. +..-.+=+|+.|.|+++.|.|++-..-..+ ..+..|..||.|.|.|.+.. | .|
T Consensus 282 ~~~~~~~v~G~V~~~P~~~~GGHV~f~l~d~~~~i~c~ayeptk~fr~~vr~L~~GD~V~v~G~v~~--------g--tL 351 (402)
T 3au7_A 282 ENYRSYRLRGRVTLEPYDIEGGHVFFEIDTKFGSVKCAAFEPTKQFRNVIRLLRKGDVVEVYGSMKK--------D--TI 351 (402)
T ss_dssp CTTCEEEEEEEEEEEEEEETTTEEEEEEEETTEEEEEEECGGGTTHHHHHTTCCTTCEEEEEEEEET--------T--EE
T ss_pred ccCceEEEEEEEecCcEeccCceEEEEEEcCCCEEEEEEEccchHHHHHHhcCCCCCEEEEEEeecC--------C--EE
Confidence 356789999999987 443236788999999999999997643345 56678999999999999832 3 89
Q ss_pred EEEEEEEEecC
Q psy8087 588 KVDYWEVVGLA 598 (658)
Q Consensus 588 ~~~~i~vls~~ 598 (658)
.+++++++.-+
T Consensus 352 nvEk~~v~~l~ 362 (402)
T 3au7_A 352 NLEKIQIVELA 362 (402)
T ss_dssp EEEEEEEEECC
T ss_pred EEEEEEEcccC
Confidence 99999999775
|
| >1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.39 E-value=0.24 Score=43.59 Aligned_cols=96 Identities=19% Similarity=0.136 Sum_probs=65.1
Q ss_pred eeecccCCccCCcEEEEEEEEEeee---------cCCCceEEEEEEeCCEEEEEEEcCCccchHHhccCCCCcEEEEEE-
Q psy8087 501 RIKIKDGEKYRDKRVTIFGWVHRLR---------RQGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRG- 570 (658)
Q Consensus 501 ~~~i~~~~~~~g~~V~v~GwI~~~R---------~~Gkkl~Fi~Lrd~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G- 570 (658)
+..|+++....+ ..+|+|||.++- ..| ++.=++|.|.+|.|++.+-.+.. ......|..|+++.|+|
T Consensus 4 ~~~Is~L~p~~~-~w~I~~rV~~k~~~r~~~~~~~~g-~~~~~~L~De~G~I~at~~~~~~-~~f~~~l~eG~vy~Is~~ 80 (114)
T 1ynx_A 4 IFAIEQLSPYQN-VWTIKARVSYKGEIKTWHNQRGDG-KLFNVNFLDTSGEIRATAFNDFA-TKFNEILQEGKVYYVSKA 80 (114)
T ss_dssp BCCGGGCCTTTC-CCEEEEEEEEEEEEEEEECSSCEE-EEEEEEEEETTEEEEEEECHHHH-HHHHHHSCSSSEEEEESC
T ss_pred eEEHHHCCCCCC-ceEEEEEEEEeccceEEecCCCCc-eEEEEEEECCCCeEEEEECHHHH-HHHHhhcccCcEEEECCc
Confidence 445666544333 488999998641 234 57778899999999999965322 13345699999999995
Q ss_pred EEEecCCC-CCCCCceEEEEEEEEEEecCC
Q psy8087 571 RIEKVPEG-KSAPGGHELKVDYWEVVGLAP 599 (658)
Q Consensus 571 ~v~~~~~~-~~~~g~~El~~~~i~vls~~~ 599 (658)
.|...... +.-++.+||.....+.+.+|.
T Consensus 81 ~V~~a~~~y~~~~~~yei~f~~~T~I~~~~ 110 (114)
T 1ynx_A 81 KLQPAKPQFTNLTHPYELNLDRDTVIEECF 110 (114)
T ss_dssp EEEECCTTTSSSSSCEEEEECSSCEEEESC
T ss_pred EEEECCCCcccCCCCEEEEECCCCEEEECC
Confidence 44433211 223478999998888888874
|
| >3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B | Back alignment and structure |
|---|
Probab=93.27 E-value=0.22 Score=44.91 Aligned_cols=65 Identities=12% Similarity=0.111 Sum_probs=46.6
Q ss_pred CCcEEEEeEEeecceecCCCeEEEEEEcCCe-EEEEEEecccchh-hhhhcCCCccEEEEEEEeEeCC
Q psy8087 69 IITNINIPAIPGPPAIPGKGLMFVTLRDGSG-FIQCVLADILCQT-EHALLLSTESSVQFRGRIEKVP 134 (658)
Q Consensus 69 ~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~-~iQvv~~~~~~~~-~~~~~l~~es~V~v~G~l~~~p 134 (658)
.-..|++.|+|.++......+. +.|.|++| .|.+..=.+.... .....+..|+.|.|.|.++.-.
T Consensus 30 ~i~~V~iVG~V~~~~~~~~~~~-~~ldD~TG~~I~~~~W~~~~~~~~~~~~~~~g~yVrV~G~l~~f~ 96 (132)
T 3kdf_D 30 EISQVTIVGIIRHAEKAPTNIV-YKIDDMTAAPMDVRQWVDTDDTSSENTVVPPETYVKVAGHLRSFQ 96 (132)
T ss_dssp ECCEEEEEEEEEEEEECSSEEE-EEEECSSSSCEEEEEEC---------CCCCTTCEEEEEEEEEEET
T ss_pred EEEEEEEEEEEEEEEEcCCeEE-EEEECCCCCEEEEEEEccCCCcccccccccCCCEEEEEEEEEeEC
Confidence 3456999999999987776544 49999999 8999875432111 1234688999999999998643
|
| >1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B* | Back alignment and structure |
|---|
Probab=92.80 E-value=0.18 Score=55.15 Aligned_cols=104 Identities=11% Similarity=-0.022 Sum_probs=59.2
Q ss_pred chHHH-h-hhCCcEEEcCCccccccC---C--CC---cccee---------------e--ccCCcceeecc--CHHHH--
Q psy8087 161 YPPEV-S-LANGIAKVTPPTLVQTQV---E--GG---STLFS---------------L--NFFGEPAYLTQ--SSQLY-- 209 (658)
Q Consensus 161 ~iR~f-l-~~~gF~EV~TPiL~~~~~---e--G~---~~~F~---------------~--~~~~~~~~L~~--Spqly-- 209 (658)
.+|+. + ...|+.||.||+|.+... + |- ++-+. . ..++..+|||- +|-.+
T Consensus 71 ~~~~~~~~~~~g~~ev~tp~l~~~~~~~~s~~g~~~r~d~~~e~~~~~g~~~eem~~~~~~~~~~~~~LRPeta~g~~~~ 150 (454)
T 1g5h_A 71 QWWSSMVVFREQVFAVDSLHQEPGSSQPRDSAFRLVSPESIREILQDREPSKEQLVAFLENLLKTSGKLRATLLHGALEH 150 (454)
T ss_dssp HHHHHHTTTCTTEEECCCCSEECCCCSSCCCCCEEECHHHHHHHHCC---CHHHHHHHHHHHHHHSCEECSCSHHHHHHT
T ss_pred HHHHHHhhhcCCeEEEEcCccCChhhccccccCcccHHHHHHHHhhccCCCHHHHHHHHHhhcCcceeecccccHHHHHH
Confidence 45655 4 578999999999975431 1 11 11110 0 12345678885 32232
Q ss_pred -HHHhccc---C-CcEEEEeeeee---cCCCCCccC----cceeeeeeeEeecCCHHHHHHHHHHHHHHH
Q psy8087 210 -LETCLPA---L-GDVYCIAQSYR---AENSRTRRH----LAEYTHVEAECAFLTFDDLLDKLEDLICDT 267 (658)
Q Consensus 210 -lk~li~g---~-~rvfeI~~~FR---~E~~~~~rH----l~EFt~lE~e~a~~d~~~~m~~~e~li~~i 267 (658)
+..+-.. + =+++|||+||| ||-+ + +| .-||||.|++. |.+.++..+..+.++...
T Consensus 151 f~~~~~s~r~~LP~~~aqig~~fR~~~nE~s-~-~~Gl~R~REF~q~E~~~-F~~pe~~~e~~~~~~~~~ 217 (454)
T 1g5h_A 151 YVNCLDLVNRKLPFGLAQIGVCFHPVSNSNQ-T-PSSVTRVGEKTEASLVW-FTPTRTSSQWLDFWLRHR 217 (454)
T ss_dssp HHHHHHHTTTBSCEEEEEEEEEEEEEC-----------CEEEEEEEEEEEE-EECHHHHHHHHHHHHHHH
T ss_pred HhhhHhhcccCCCEEEEEeeeeccCCccccc-C-CCCccccCceehhheEE-EeCHhhHHHHHHHHHHHH
Confidence 2332221 3 36999999999 6864 2 44 35999999995 778887766555555443
|
| >4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis} | Back alignment and structure |
|---|
Probab=92.52 E-value=0.44 Score=43.17 Aligned_cols=64 Identities=13% Similarity=0.117 Sum_probs=46.2
Q ss_pred CCcEEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccch--hhhhhcCCCccEEEEEEEeEeC
Q psy8087 69 IITNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILCQ--TEHALLLSTESSVQFRGRIEKV 133 (658)
Q Consensus 69 ~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~~--~~~~~~l~~es~V~v~G~l~~~ 133 (658)
.-..|++.|.|.++...... .-+.|.|++|.|.+..=.+... ......+..|+.|.|.|.++.-
T Consensus 35 ~i~~V~iVG~V~~~~~~~~~-~~~~ldD~TG~I~~~~W~~~~~~~~~~~~~~~~g~yVrV~G~v~~f 100 (136)
T 4gop_B 35 ELGQLTFVAVVRNISRNATN-VAYSVEDGTGQIEVRQWLDSSSDDSSKASEIRNNVYVRVLGTLKSF 100 (136)
T ss_dssp BCCEEEEEEEEEEEEECSSE-EEEEEECSSCEEEEEEECC--------CCSCCTTCEEEEEEEEEEE
T ss_pred EEEEEEEEEEEEEEEecCCe-EEEEEECCCCCEEEEEecccCCcccccccccCCCCEEEEEEEEEEe
Confidence 34679999999998876654 4459999999988876443211 0123468999999999999864
|
| >2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A | Back alignment and structure |
|---|
Probab=92.32 E-value=0.71 Score=46.88 Aligned_cols=79 Identities=13% Similarity=0.071 Sum_probs=58.0
Q ss_pred cEEEEEEEEEeeecCCCceEEEEEEeCCE-EEEEEEcCCccch-HHhccCCCCcEEEEEEEEEecCCCCCCCCceEEEEE
Q psy8087 513 KRVTIFGWVHRLRRQGKGLMFVTLRDGSG-FIQCVLADILCQT-EHALLLSTESSVQFRGRIEKVPEGKSAPGGHELKVD 590 (658)
Q Consensus 513 ~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~-~iQvv~~~~~~~~-~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~El~~~ 590 (658)
..|++.|+|.++...+ .-.-+.|.|++| .|.|.+-.+.... .....+..|++|.|.|.+..- .+...|.+.
T Consensus 72 ~~V~ivG~V~~i~~~~-~~~~~~L~D~TG~~I~~k~W~~~~~~~~~~~~~~~G~yVrV~G~v~~f------~g~~qi~i~ 144 (270)
T 2pi2_A 72 SQVTIVGIIRHAEKAP-TNIVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPPETYVKVAGHLRSF------QNKKSLVAF 144 (270)
T ss_dssp SEEEEEEEEEEEEECS-SEEEEEEECSSSSCEEEEEECC-------CCCCCTTCEEEEEEEEEEE------TTEEEEEEE
T ss_pred EEEEEEEEEEEEEecc-ceEEEEEECCCCCEEEEEEEcCcCcccchhhcCCCCCEEEEEEEEEec------CCeeEEEEE
Confidence 4699999999997775 455578999999 7888875432211 124579999999999999653 356788888
Q ss_pred EEEEEecC
Q psy8087 591 YWEVVGLA 598 (658)
Q Consensus 591 ~i~vls~~ 598 (658)
.+..+...
T Consensus 145 ~ir~v~d~ 152 (270)
T 2pi2_A 145 KIMPLEDM 152 (270)
T ss_dssp EEEECSCT
T ss_pred EEEecCCH
Confidence 88877643
|
| >3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.18 E-value=0.44 Score=53.88 Aligned_cols=105 Identities=11% Similarity=0.032 Sum_probs=66.4
Q ss_pred CchHHHhhhCCcEEEcCCccccccC--------CCCccceee-ccCCc-ceeeccCHHHHHHHhcc-----cC-CcEEEE
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV--------EGGSTLFSL-NFFGE-PAYLTQSSQLYLETCLP-----AL-GDVYCI 223 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~--------eG~~~~F~~-~~~~~-~~~L~~Spqlylk~li~-----g~-~rvfeI 223 (658)
..+|+.|...||.||.|+.++.... .++...+.+ |-... .-.||+|-=--+=..+. +. =|+||+
T Consensus 398 ~~ir~~l~~~Gf~Evitysf~s~~~~~~~l~~~~~~~~~v~L~NPis~e~svmRtsLlpgLL~~l~~N~~~~~~vrlFEi 477 (589)
T 3l4g_B 398 ELLRHDMAAAGFTEALTFALCSQEDIADKLGVDISATKAVHISNPKTAEFQVARTTLLPGLLKTIAANRKMPLPLKLFEI 477 (589)
T ss_dssp HHHHHHHHHTTCEECCCCSEECHHHHTGGGTSCTTSSCCCBBSSCSSGGGSEECSCSHHHHHHHHHHTTTSCSCEEEEEE
T ss_pred HHHHHHHHHCCCEEEecCcccCHHHHHHHhCCCCCCCCeEEEcCCCchhHhHHHHHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 4789999999999999999974321 111222322 22222 24677763222222221 11 379999
Q ss_pred eeeeecCCCCCccCcceeeeeeeEeecC--CHHHHHHHHHHHHH
Q psy8087 224 AQSYRAENSRTRRHLAEYTHVEAECAFL--TFDDLLDKLEDLIC 265 (658)
Q Consensus 224 ~~~FR~E~~~~~rHl~EFt~lE~e~a~~--d~~~~m~~~e~li~ 265 (658)
|+|||.+..+ .+|.+|+.++..-+... ++.++...++.++.
T Consensus 478 G~Vf~~d~~~-~~~~~e~~~la~~~~g~~~~f~~lkg~le~ll~ 520 (589)
T 3l4g_B 478 SDIVIKDSNT-DVGAKNYRHLCAVYYNKNPGFEIIHGLLDRIMQ 520 (589)
T ss_dssp EEEEEECTTS-TTSEEEEEEEEEEEESSSCCHHHHHHHHHHHHH
T ss_pred eeEEecCCcc-ccCCccccEEEEEEECCCCCHHHHHHHHHHHHH
Confidence 9999987643 47889999998876653 57777766665554
|
| >3kdf_A Replication protein A 14 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 1quq_B 1l1o_A | Back alignment and structure |
|---|
Probab=92.15 E-value=0.96 Score=40.25 Aligned_cols=75 Identities=17% Similarity=0.178 Sum_probs=53.3
Q ss_pred ccCCccCCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCCCCCCCc
Q psy8087 505 KDGEKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEGKSAPGG 584 (658)
Q Consensus 505 ~~~~~~~g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~ 584 (658)
.-+..+.|++|++-|+|.+++..|+ .|+.-..+++.++|.++.... ..+ +.+|.|.|++ .+.
T Consensus 15 s~L~~fvgk~VrivGkV~~~~~~g~--~~~l~s~Dg~~Vtv~l~~p~~-----~~l--~~~vEViG~V---------~~~ 76 (121)
T 3kdf_A 15 GMLAQFIDKPVCFVGRLEKIHPTGK--MFILSDGEGKNGTIELMEPLD-----EEI--SGIVEVVGRV---------TAK 76 (121)
T ss_dssp GGGGGGTTCEEEEEEEEEEECTTSS--EEEEECTTSCEEEEECSSCCS-----SCC--CSEEEEEEEE---------CTT
T ss_pred HHHHhhCCCeEEEEEEEEEEcCCCC--EEEEEeCCCCEEEEEeCCCCC-----ccc--CcEEEEEEEE---------CCC
Confidence 3456789999999999999998774 343333455678888875321 123 4599999999 334
Q ss_pred eEEEEEEEEEEec
Q psy8087 585 HELKVDYWEVVGL 597 (658)
Q Consensus 585 ~El~~~~i~vls~ 597 (658)
.+|.+..+.-++.
T Consensus 77 ~tI~~~~~~~fg~ 89 (121)
T 3kdf_A 77 ATILCTSYVQFKE 89 (121)
T ss_dssp SCEEEEEEEECCC
T ss_pred CeEEEEEEEecCC
Confidence 6788888877664
|
| >1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3 | Back alignment and structure |
|---|
Probab=91.95 E-value=1.4 Score=38.87 Aligned_cols=84 Identities=15% Similarity=0.112 Sum_probs=59.1
Q ss_pred ecccCCccCCcEEEEEEEEEee---e----cCCC-ceEEEEEEeCCEEEEEEEcCCccchHHhccCCCCcEEEEE-EEEE
Q psy8087 503 KIKDGEKYRDKRVTIFGWVHRL---R----RQGK-GLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFR-GRIE 573 (658)
Q Consensus 503 ~i~~~~~~~g~~V~v~GwI~~~---R----~~Gk-kl~Fi~Lrd~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~-G~v~ 573 (658)
+|.++.. ....|.+.|.|.++ | ..|+ ...=+.|.|.+|.|.+.+=... ...+..|++|.|+ |.+.
T Consensus 4 ~I~dL~~-~~~~v~~~~~V~~~~~~~~~~~k~G~~~~~~~~l~D~TG~I~~tlW~~~-----~~~~~~G~vv~i~~g~v~ 77 (119)
T 1o7i_A 4 KVGNLKP-NMESVNVTVRVLEASEARQIQTKNGVRTISEAIVGDETGRVKLTLWGKH-----AGSIKEGQVVKIENAWTT 77 (119)
T ss_dssp CGGGCCT-TCSSEEEEEEEEEECCCEEECCTTCCEEEEEEEEEETTEEEEEEEEGGG-----TTCCCTTCEEEEEEEEEE
T ss_pred EHHHCcC-CCCcEEEEEEEEECCCCeeEEecCCCEEEEEEEEEeCCCEEEEEEECCh-----hhcCCCCCEEEEEeEEEE
Confidence 4555543 22368899999876 4 3454 5777899999999888875432 2358999999999 8875
Q ss_pred ecCCCCCCCCceEEEEEEEEEEecC
Q psy8087 574 KVPEGKSAPGGHELKVDYWEVVGLA 598 (658)
Q Consensus 574 ~~~~~~~~~g~~El~~~~i~vls~~ 598 (658)
.- .|.++|.+.....+.++
T Consensus 78 ~~------~g~~qL~i~~~~~i~~~ 96 (119)
T 1o7i_A 78 AF------KGQVQLNAGSKTKIAEA 96 (119)
T ss_dssp EE------TTEEEEEECTTCEEEEC
T ss_pred Ee------CCEEEEEECCCEEEEEc
Confidence 42 47799999875555554
|
| >2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B* | Back alignment and structure |
|---|
Probab=91.47 E-value=0.63 Score=54.51 Aligned_cols=106 Identities=15% Similarity=0.017 Sum_probs=67.8
Q ss_pred CchHHHhhhCCcEEEcCCccccccCC----CCcc-ceee-ccCCc-ceeeccCHHHHHHHhcc-----cC--CcEEEEee
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQVE----GGST-LFSL-NFFGE-PAYLTQSSQLYLETCLP-----AL--GDVYCIAQ 225 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~e----G~~~-~F~~-~~~~~-~~~L~~Spqlylk~li~-----g~--~rvfeI~~ 225 (658)
..+|+.|...||.|+.|..++....- +... .+.+ |-... ...||+|-=--+=..+. +. -|+||+|+
T Consensus 500 ~~ir~~L~~~Gf~Evitysfvs~~~~~~l~~~~~~~v~L~NPis~e~svLRtsLlpgLL~~l~~N~~r~~~~vrlFEiG~ 579 (795)
T 2rhq_B 500 RTLKETLEGAGLNQAITYSLVSKDHAKDFALQERPTISLLMPMSEAHATLRQSLLPHLIEATAYNVARKNKDVRLYEIGR 579 (795)
T ss_dssp HHHHHHHHHTTCEECCCCSEECTTTTTTTCSSCCCCEECSSCSCTTSSEECSCSHHHHHHHHHHHHHTTCCCEEEEEEEE
T ss_pred HHHHHHHHHCCCEEEecCCccCHHHHHhhCCCCCceEEEcCCCchhhhhhhhccHHHHHHHHHHHhcCCCCCeEEEEEee
Confidence 48899999999999999888744211 1122 2332 22222 23677653322222221 22 27999999
Q ss_pred eeecCCCCCccCcceeeeeeeEeec-------------CCHHHHHHHHHHHHHHH
Q psy8087 226 SYRAENSRTRRHLAEYTHVEAECAF-------------LTFDDLLDKLEDLICDT 267 (658)
Q Consensus 226 ~FR~E~~~~~rHl~EFt~lE~e~a~-------------~d~~~~m~~~e~li~~i 267 (658)
|||.+..+. .| +||++|..-++. .|+.|+...+|.++..+
T Consensus 580 Vf~~d~~~~-~~-~e~~~la~l~~G~~~~~~w~~~~~~~dF~dlKg~le~ll~~l 632 (795)
T 2rhq_B 580 VFFGNGEGE-LP-DEVEYLSGILTGEYVVNAWQGKKEEIDFFIAKGVVDRVAEKL 632 (795)
T ss_dssp EEECCCTTS-CC-EEEEEEEEEEESEEEEEGGGTEEEECCHHHHHHHHHHHHHHH
T ss_pred EEecCCccc-Cc-chhhEEEEEEEeccccccccCCCCCCCHHHHHHHHHHHHHHc
Confidence 999754322 56 899999876654 58889998888887654
|
| >3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, MCSG, structural genomics, midwest center for structural GE protein structure initiative; HET: MSE; 2.09A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=91.43 E-value=0.58 Score=45.73 Aligned_cols=108 Identities=12% Similarity=0.112 Sum_probs=62.7
Q ss_pred CchHHHhhhCCcEEEcCCccccccCCC------Cccceee-ccCC-cceeeccCHHHHH-HHhc---c-cCC--cEEEEe
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQVEG------GSTLFSL-NFFG-EPAYLTQSSQLYL-ETCL---P-ALG--DVYCIA 224 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~eG------~~~~F~~-~~~~-~~~~L~~Spqlyl-k~li---~-g~~--rvfeI~ 224 (658)
..+|+.|...||.||-|-.++....-. ......+ |-.. ..-.||+|-=--+ +.+. . +.. |+||||
T Consensus 11 ~~ir~~l~~~G~~Evitysf~~~~~~~~~~~~~~~~~v~l~NPls~e~~vmRtsLlpgLL~~~~~N~~r~~~~v~lFEiG 90 (213)
T 3ig2_A 11 NLVAEQLVGCGFNEILNNSLTRAAYYDGLESYPSKNLVMLLNPLSADLNCMRQTLLFGGLESIAHNANRKNADLKFFEFG 90 (213)
T ss_dssp HHHHHHHHHTTCEECCCCSEECGGGGTTCSSSCGGGCEEBSSGGGCSCCEECSCSHHHHHHHHHHC------CCEEEEEE
T ss_pred HHHHHHHHHCCCeEEeccccCCHHHHHhhcccCcCCeEEEeCCcchhHHHHHHHhHHHHHHHHHHHhcCCCCCeeEEEee
Confidence 479999999999999999887432100 0112222 2222 2347787733222 2222 1 332 799999
Q ss_pred eeeecCCCCCc-----cCcceeeeeeeEeec-------------CCHHHHHHHHHHHHHHH
Q psy8087 225 QSYRAENSRTR-----RHLAEYTHVEAECAF-------------LTFDDLLDKLEDLICDT 267 (658)
Q Consensus 225 ~~FR~E~~~~~-----rHl~EFt~lE~e~a~-------------~d~~~~m~~~e~li~~i 267 (658)
+||+.++.+.. .+..|..+|-+-++. .|+.|+...+|.++..+
T Consensus 91 ~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~df~dlKg~ve~ll~~l 151 (213)
T 3ig2_A 91 NCYHFDAEKKNPEKVLAPYSEDYHLGLWVTGKMVSNSWAHADENTSVYELKAYVENIFKRL 151 (213)
T ss_dssp EEEEECC----------CEEEEEEEEEEEEEEECCSCC----CHHHHHHHHHHHHHHHHHT
T ss_pred eEEecCcccccccccccccchhHEEEEEEECCCccccCCCCCCCcCHHHHHHHHHHHHHHh
Confidence 99997653211 234588888876655 36777777777776543
|
| >2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A | Back alignment and structure |
|---|
Probab=90.22 E-value=2.4 Score=36.82 Aligned_cols=86 Identities=16% Similarity=0.084 Sum_probs=61.3
Q ss_pred eecccCCccCCcEEEEEEEEEeeec--CCCceEEEEEEeCCEEEEEEEcCCccchHHhccCCCCcEEEEE-EEEEecCCC
Q psy8087 502 IKIKDGEKYRDKRVTIFGWVHRLRR--QGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFR-GRIEKVPEG 578 (658)
Q Consensus 502 ~~i~~~~~~~g~~V~v~GwI~~~R~--~Gkkl~Fi~Lrd~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~-G~v~~~~~~ 578 (658)
.+|.++.. .++.|.+.|.|.++-. .|+....+.|-|.+|.|-+++=... .+..+..|++|.|+ |.+..-
T Consensus 6 ~kI~dl~~-~~~~v~v~~~V~~~~~~~~~~~~~~~~l~DeTG~I~~t~W~~~----~~~~~~~G~~V~i~n~~v~~~--- 77 (109)
T 2kbn_A 6 TKIVDIVE-NGQWANLKAKVIQLWENTHESISQVGLLGDETGIIKFTIWKNA----ELPLLEQGESYLLRSVVVGEY--- 77 (109)
T ss_dssp CCTTTCCS-TTCEEEEEEEEEEEEECCCSSEEEEEEEECTTCCEEEEEEGGG----CCCCCCTTCEEEEEEEEEEEE---
T ss_pred eEHHHCCC-CCCcEEEEEEEEEeEcCCCCeEEEEEEEECCCCeEEEEEECcc----cccccCCCCEEEEEEEEEEEE---
Confidence 45666543 3688999999988743 3344556899999999888875421 23479999999999 666432
Q ss_pred CCCCCceEEEEEEEEEEecC
Q psy8087 579 KSAPGGHELKVDYWEVVGLA 598 (658)
Q Consensus 579 ~~~~g~~El~~~~i~vls~~ 598 (658)
.|.++|.+.++..+.+.
T Consensus 78 ---~G~~~L~v~~~~~I~~~ 94 (109)
T 2kbn_A 78 ---NDRFQVQVNKNSSIEKL 94 (109)
T ss_dssp ---TTEEEEEECSSSEEEEC
T ss_pred ---CCEEEEEECCceEEEEC
Confidence 47799999877666654
|
| >1nnx_A Protein YGIW; structural genomics, hypothetical protein, OB-fold, structure 2 function project, S2F, unknown function; 1.45A {Escherichia coli} SCOP: b.40.10.1 | Back alignment and structure |
|---|
Probab=89.47 E-value=0.68 Score=40.42 Aligned_cols=58 Identities=14% Similarity=0.204 Sum_probs=46.1
Q ss_pred cCCcEEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccchhhhhhcCCCccEEEEEEEeEe
Q psy8087 68 YIITNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEK 132 (658)
Q Consensus 68 ~~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~~~~~~~~l~~es~V~v~G~l~~ 132 (658)
..++.|+|.|.|.+.-.. . -| .++|++|.|+|-++.+. |.-..+++++-|.+.|.+-.
T Consensus 35 ~Dd~~V~L~G~Iv~~~~~--d-~Y-~F~D~TG~I~VeId~~~---w~g~~v~p~~~Vri~GevDk 92 (109)
T 1nnx_A 35 RDDTWVTLRGNIVERISD--D-LY-VFKDASGTINVDIDHKR---WNGVTVTPKDTVEIQGEVDK 92 (109)
T ss_dssp CSSEEEEEEEEEEEEEET--T-EE-EEEETTEEEEEECCGGG---STTCCCCTTSCEEEEEEEEE
T ss_pred cCCCeEEEEEEEEEEeCC--C-eE-EEECCCccEEEEEChhh---cCCcccCCCCEEEEEEEECC
Confidence 567889999999985532 2 34 78999999999987654 33357999999999999985
|
| >3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1, phenylalanyl-tRNA SYNT beta subunit, structural genomics, PSI-2; HET: TAM; 2.44A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=88.59 E-value=1.6 Score=42.47 Aligned_cols=108 Identities=14% Similarity=0.086 Sum_probs=67.3
Q ss_pred CchHHHhhhCCcEEEcCCccccccCCC------Cccceee-ccCCc-ceeeccCHHHHH-HHhc---c-cCC--cEEEEe
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQVEG------GSTLFSL-NFFGE-PAYLTQSSQLYL-ETCL---P-ALG--DVYCIA 224 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~eG------~~~~F~~-~~~~~-~~~L~~Spqlyl-k~li---~-g~~--rvfeI~ 224 (658)
..+|+.|...||.||-|-.++....-. ......+ |-... .-.||+|-=--+ +.+. . +.. |+||||
T Consensus 11 ~~ir~~L~~~G~~Evitysf~s~~~~~~~~~~~~~~~v~l~NPls~e~~vmRtsLlpgLL~~~~~N~~r~~~~~~lFEiG 90 (213)
T 3ica_A 11 TVVSEQLVGAGFNEILNNSLTAGSYYEGLKSHPREMAVELMNPLSQELNCMRQTLLFGGLETLSHNLRRKHLSLYLFEWG 90 (213)
T ss_dssp HHHHHHHHHTTCEECCCCSEEEGGGGTTCSSSCGGGCCBCSSBSCSSEEEECSSSHHHHHHHHHHHHTTTCSEEEEEEEE
T ss_pred HHHHHHHHHCCCceeeeccCCCHHHHhhhcccCcCCeEEecCCccHHHHHHHHHhHHHHHHHHHHHHcCCCCCeeEEEee
Confidence 479999999999999999887432100 0111222 22222 357887733222 2222 2 443 799999
Q ss_pred eeeecCCCCC-----ccCcceeeeeeeEeec-------------CCHHHHHHHHHHHHHHH
Q psy8087 225 QSYRAENSRT-----RRHLAEYTHVEAECAF-------------LTFDDLLDKLEDLICDT 267 (658)
Q Consensus 225 ~~FR~E~~~~-----~rHl~EFt~lE~e~a~-------------~d~~~~m~~~e~li~~i 267 (658)
+||+.++.+. ..+..|..+|-.-++. .|+.|+...+|.++..+
T Consensus 91 ~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~df~d~Kg~ve~ll~~l 151 (213)
T 3ica_A 91 KCYRFHAAKRTDETPLAAYAEDDRLGIWICGQRVHNSWAHPEEPTSVFELKAVVEQVLCRV 151 (213)
T ss_dssp EEEEEECCCC--CCSSCEEEEEEEEEEEEEEBCCC-----CCCBCCHHHHHHHHHHHHHHT
T ss_pred eEEecCCccccccccccccchhhEEEEEEeCCCCcccCCCCCCCcCHHHHHHHHHHHHHHh
Confidence 9999765321 1234688888776655 47888888888877643
|
| >3kf8_A Protein STN1; OB fold; 2.40A {Candida tropicalis mya-3404} | Back alignment and structure |
|---|
Probab=88.55 E-value=2 Score=42.06 Aligned_cols=87 Identities=18% Similarity=0.171 Sum_probs=59.1
Q ss_pred CcEEEEEEEEEeeecCC-------CceEEEEEEeCCEE---EEEEEcCCccc-h-HHhccCCCCcEEEEEEEEEecCCC-
Q psy8087 512 DKRVTIFGWVHRLRRQG-------KGLMFVTLRDGSGF---IQCVLADILCQ-T-EHALLLSTESSVQFRGRIEKVPEG- 578 (658)
Q Consensus 512 g~~V~v~GwI~~~R~~G-------kkl~Fi~Lrd~~~~---iQvv~~~~~~~-~-~~~~~L~~gs~V~V~G~v~~~~~~- 578 (658)
=+.|.|.|.|...+-.- ....|+.|-|.+|. |.|.++..... . ........|.+|.|+|++..-..+
T Consensus 85 I~~V~IvG~VVg~~~k~~r~~~~~~~~~~l~IDDsSG~~s~i~~k~~~~~~~~~gl~l~~~~~G~iV~VkG~i~~~r~~~ 164 (220)
T 3kf8_A 85 VNQINIFGKIVYEQYKEKEFNGVEESYVILVISDFIGIDSKIRVRLSQEQFKEVGLTLDKKNYGKIVELEGEIYNWYDSI 164 (220)
T ss_dssp ECEEEEEEEEEEEEEECCBCSSCBCCEEEEEEECCCSSSCEEEEEEEHHHHHTTTCCTTSCCTTCEEEEEEEEEECCCST
T ss_pred cEEEEEEEEEEEEEEEeccccccccceEEEEEeCCCCCCceEEEEecHHHhhccCccccccCCCeEEEEEEEEEeecccc
Confidence 35799999999986543 23589999999984 88877643110 0 011124589999999999764321
Q ss_pred -CCCCCceEEEEEEEEEEecC
Q psy8087 579 -KSAPGGHELKVDYWEVVGLA 598 (658)
Q Consensus 579 -~~~~g~~El~~~~i~vls~~ 598 (658)
..+.-.-||.++++++++..
T Consensus 165 ~~~~~~~rei~ve~i~vl~~~ 185 (220)
T 3kf8_A 165 NVSKKPDRELKVSKITVLSHR 185 (220)
T ss_dssp TTTSCCCEEEEEEEEEEEESS
T ss_pred ccccccceEEEEEEEEEeccC
Confidence 11122579999999999865
|
| >3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A | Back alignment and structure |
|---|
Probab=88.24 E-value=1.9 Score=36.58 Aligned_cols=69 Identities=16% Similarity=0.143 Sum_probs=46.1
Q ss_pred CCcEEEEeEEeecc-------eecC--CCeEEEEEEcCCeEEEEEEecccchhhhhhcCCCccEEEEEEEeEeCCCCccc
Q psy8087 69 IITNINIPAIPGPP-------AIPG--KGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEENMK 139 (658)
Q Consensus 69 ~~~~v~~~Grv~~~-------r~~g--k~l~Fi~LrD~~~~iQvv~~~~~~~~~~~~~l~~es~V~v~G~l~~~p~~~~d 139 (658)
.+..|+|.|+|.++ |+.| +.+.=+.|.|.+|.|-+.+=.+... ..+.+|++|.+.|.++.-.. .++
T Consensus 10 ~g~~v~i~~~V~~~~~~r~~~~~~G~~~~v~~~~l~DeTG~I~~tlW~~~~~----~~i~~Gdvv~i~g~v~~~~~-~~e 84 (97)
T 3e0e_A 10 PNLSGTINAEVVTAYPKKEFSRKDGTKGQLKSLFLKDDTGSIRGTLWNELAD----FEVKKGDIAEVSGYVKQGYS-GLE 84 (97)
T ss_dssp TTEEEEEEEEEEEECCCEEEC----CCEEEEEEEEEETTEEEEEEEEGGGGG----CCCCTTCEEEEEEEEEEC---CEE
T ss_pred CCCcEEEEEEEEECCCceEEEcCCCCeeEEEEEEEECCCCcEEEEEECCccc----cccCCCCEEEEEEEEEEcCC-eEE
Confidence 34678999998774 2234 2366689999999999987654321 15899999999998876433 344
Q ss_pred eEe
Q psy8087 140 VQL 142 (658)
Q Consensus 140 ~~l 142 (658)
+.+
T Consensus 85 l~~ 87 (97)
T 3e0e_A 85 ISV 87 (97)
T ss_dssp EEE
T ss_pred EEE
Confidence 444
|
| >3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=87.05 E-value=3.9 Score=35.21 Aligned_cols=70 Identities=19% Similarity=0.131 Sum_probs=49.8
Q ss_pred CcEEEEeEEeecce-------ecCC--CeEEEEEEcCCeEEEEEEecccchhhhhhcCCCccEEEEEEEeEeCCCCccce
Q psy8087 70 ITNINIPAIPGPPA-------IPGK--GLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEENMKV 140 (658)
Q Consensus 70 ~~~v~~~Grv~~~r-------~~gk--~l~Fi~LrD~~~~iQvv~~~~~~~~~~~~~l~~es~V~v~G~l~~~p~~~~d~ 140 (658)
+..|+|.|+|.++- +.|+ .+.=+.|.|.+|.|.+.+=.+... ..+.+|++|.+.|.++....+.+++
T Consensus 14 ~~~v~v~g~V~~~~~~r~~~~~~G~~~~v~~~~l~D~TG~IrvtlW~~~a~----~~l~~Gdvv~i~g~vk~~~~g~~eL 89 (105)
T 3dm3_A 14 GMTATFEGEVISALPIKEFKRADGSIGKLKSFIVRDETGSIRVTLWDNLTD----IDVGRGDYVRVRGYIREGYYGGLEC 89 (105)
T ss_dssp SEEEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEETTEEEEEEEEGGGGG----SCCCTTCEEEEEEEEEECTTSSEEE
T ss_pred CCeEEEEEEEEECCCceEEEcCCCCeeEEEEEEEECCCCcEEEEEECcccc----cccCCCCEEEEEEEEEEccCCCEEE
Confidence 36799999987742 2332 255689999999999886544321 1689999999999898876555666
Q ss_pred Eec
Q psy8087 141 QLI 143 (658)
Q Consensus 141 ~l~ 143 (658)
.+.
T Consensus 90 ~~g 92 (105)
T 3dm3_A 90 TAN 92 (105)
T ss_dssp EEE
T ss_pred EeC
Confidence 554
|
| >1txy_A Primosomal replication protein N; OB fold, dimer, DNA binding protein; 2.00A {Escherichia coli} SCOP: b.40.4.3 PDB: 1woc_A 2pnh_A 4apv_A | Back alignment and structure |
|---|
Probab=87.01 E-value=6 Score=33.85 Aligned_cols=53 Identities=13% Similarity=0.142 Sum_probs=33.7
Q ss_pred EEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCCCCCCCceEEEEEEEEEEec
Q psy8087 543 IQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEGKSAPGGHELKVDYWEVVGL 597 (658)
Q Consensus 543 iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~El~~~~i~vls~ 597 (658)
++|++-..... .....|+.|+-|.|+|.+... ..+......+|.+++++.|+.
T Consensus 50 ~~vv~~g~~Ae-~~~~~l~KG~~V~V~G~L~~~-~~~~G~~r~~v~~~~i~~l~~ 102 (104)
T 1txy_A 50 MPVIVSGHENQ-AITHSITVGSRITVQGFISCH-KAKNGLSKMVLHAEQIELIDS 102 (104)
T ss_dssp EEEEEESSTTH-HHHTTCCTTCEEEEEEEEEC---------CCEEEEEEEEEC--
T ss_pred EEEEEEhHHHH-HHHhhCCCCCEEEEEEEEEec-cCCCCCEEEEEEEEEEEECcC
Confidence 77787764321 234569999999999999876 222211128999999998863
|
| >3kf6_A Protein STN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=85.86 E-value=2.3 Score=39.59 Aligned_cols=65 Identities=22% Similarity=0.180 Sum_probs=49.4
Q ss_pred cCCcEEEEeEEeecceecCCCeEEEEEEcCCe-EEEEEEecccc-hh-hhhhcCCCccEEEEEEEeEeC
Q psy8087 68 YIITNINIPAIPGPPAIPGKGLMFVTLRDGSG-FIQCVLADILC-QT-EHALLLSTESSVQFRGRIEKV 133 (658)
Q Consensus 68 ~~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~-~iQvv~~~~~~-~~-~~~~~l~~es~V~v~G~l~~~ 133 (658)
..-..|+|.|.|.+++...+ -....|-|+|| .|.|++-.+.. .. -....+..|+.|.|.|.++.-
T Consensus 45 ~PI~~V~IvGiVv~~~~~~~-~~~ytIDD~TG~~I~cv~w~~~~~~~~~~~~~l~~G~~VrV~G~v~~f 112 (159)
T 3kf6_A 45 FPIRWIQIVGYIAAIDIYEG-KHVLTVDDCSGMVLRVVFIIQDDFSMSKRAISMSPGNVVCVFGKINSF 112 (159)
T ss_dssp EEECEEEEEEEEEEEEEETT-EEEEEEECSSSCEEEEEEEGGGCHHHHHHHTTCCTTCEEEEEEEEECS
T ss_pred eEEEEEEEEEEEEEEEEeCC-EEEEEEecCCCCeEEEEEEccCCCCcccccccCCCCCEEEEEEEEEee
Confidence 34567999999999888876 47779999999 59999876541 11 112358899999999999863
|
| >2pi2_E Replication protein A 14 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_B 2z6k_C | Back alignment and structure |
|---|
Probab=85.42 E-value=5.5 Score=36.30 Aligned_cols=77 Identities=22% Similarity=0.258 Sum_probs=51.7
Q ss_pred eecccCCccCCcEEEEEEEEEeeecCCCceEEEEEEeC-CEEEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCCCC
Q psy8087 502 IKIKDGEKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDG-SGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEGKS 580 (658)
Q Consensus 502 ~~i~~~~~~~g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~-~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~ 580 (658)
+.-+-+....|++|+|-|+|.++-..|+ .| +|... ++.|+|.++.... -..+-+|.|.|+|
T Consensus 33 VN~s~L~~fvGk~VriVGkV~~~~~~G~--~~-~l~s~Dg~~VtV~l~~pL~-------~~~~~~VEViG~V-------- 94 (142)
T 2pi2_E 33 INAGMLAQFIDKPVCFVGRLEKIHPTGK--MF-ILSDGEGKNGTIELMEPLD-------EEISGIVEVVGRV-------- 94 (142)
T ss_dssp ECGGGGGGSTTCEEEEEEEEEEECTTSS--EE-EEECTTSCEEEEECSSCCS-------SCCCSEEEEEEEE--------
T ss_pred ECHHHHHhhCCCEEEEEEEEeEEcCCCC--EE-EEEeCCCcEEEEEeCCCCC-------ccCCCEEEEEEEE--------
Confidence 3333457788999999999999944443 33 45544 5578888764211 1347799999999
Q ss_pred CCCceEEEEEEEEEEec
Q psy8087 581 APGGHELKVDYWEVVGL 597 (658)
Q Consensus 581 ~~g~~El~~~~i~vls~ 597 (658)
.+..+|.+..+.-++.
T Consensus 95 -~~~~tI~~~~~~~fGd 110 (142)
T 2pi2_E 95 -TAKATILCTSYVQFKE 110 (142)
T ss_dssp -CTTSCEEEEEEEECCC
T ss_pred -CCCCcEEEEEEEecCC
Confidence 2345688877765554
|
| >1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A | Back alignment and structure |
|---|
Probab=85.20 E-value=2.3 Score=42.07 Aligned_cols=98 Identities=18% Similarity=0.165 Sum_probs=64.8
Q ss_pred cceeecccCCccCCcEEEEEEEEEee---e------cCCCceEEEEEEeCCEEEEEEEcCCccchHHhccCCCCcEEEEE
Q psy8087 499 AVRIKIKDGEKYRDKRVTIFGWVHRL---R------RQGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFR 569 (658)
Q Consensus 499 ~~~~~i~~~~~~~g~~V~v~GwI~~~---R------~~Gkkl~Fi~Lrd~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~ 569 (658)
+.+..|.++.... ..++|+|||.++ | ..| ++.=++|.|.+|.|++.+-.+.. ..+...|..|+++.|+
T Consensus 6 ~~~~~I~~L~p~~-~~w~I~~rV~~k~~~r~~~~~~~~g-~~~~~~L~De~G~I~at~~~~~~-~~~~~~l~~G~vy~i~ 82 (246)
T 1jmc_A 6 SKVVPIASLTPYQ-SKWTICARVTNKSQIRTWSNSRGEG-KLFSLELVDESGEIRATAFNEQV-DKFFPLIEVNKVYYFS 82 (246)
T ss_dssp -CBCCGGGCCTTC-CCCEEEEEEEEECCCEEEECSSCEE-EEEEEEEECSSCEEEEEEEHHHH-HHHGGGCCTTCEEEEE
T ss_pred cceEEHHHCCCCC-CceEEEEEEEEecccceeeCCCCCc-eEEEEEEECCCCeEEEEEChHHH-HHhhhhcccCCEEEEC
Confidence 3456677765443 358899999876 3 123 56668899999999999875322 1344579999999999
Q ss_pred EEEEecCCC--CCCCCceEEEEEEEEEEecCC
Q psy8087 570 GRIEKVPEG--KSAPGGHELKVDYWEVVGLAP 599 (658)
Q Consensus 570 G~v~~~~~~--~~~~g~~El~~~~i~vls~~~ 599 (658)
+.-.+...+ +...+.+||....-+.+.+|.
T Consensus 83 ~~~v~~~~~~y~~~~~~~ei~~~~~T~I~~~~ 114 (246)
T 1jmc_A 83 KGTLKIANKQFTAVKNDYEMTFNNETSVMPCE 114 (246)
T ss_dssp CCEEEECCGGGCCCCCSEEEECCTTCEEEECC
T ss_pred CCEEEEcccCcccCCCCEEEEEcCCcEEEEcc
Confidence 644332212 223578999887665555553
|
| >2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold, transferase; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A* | Back alignment and structure |
|---|
Probab=84.33 E-value=1.3 Score=53.88 Aligned_cols=80 Identities=16% Similarity=0.123 Sum_probs=47.5
Q ss_pred cCCcEEEEEEEEEeeec----CCCceEEEEEEeCCEEEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCCCCCCCce
Q psy8087 510 YRDKRVTIFGWVHRLRR----QGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEGKSAPGGH 585 (658)
Q Consensus 510 ~~g~~V~v~GwI~~~R~----~Gkkl~Fi~Lrd~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~ 585 (658)
..|+.|+|+|.|.+++. .|+.++|++|-|.+|.+.|++..+... .....|..+.+|.|+|.+.... .+
T Consensus 1040 ~~g~~v~v~G~v~~~~~~~Tk~G~~maf~tleD~tg~~evvvf~~~~~-~~~~~l~~~~~~~v~G~v~~~~-------~~ 1111 (1220)
T 2hpi_A 1040 PGKPKVLLSGMVEEVVRKPTRSGGMMARFTLSDETGALEVVVFGRAYE-GVSPKLKEDIPLLVLAEVEKGE-------EL 1111 (1220)
T ss_dssp SSSCEEEEEEEECCC------------CEEEEETTEEEEEC--------------CTTCEEEEEEEEC------------
T ss_pred cCCCeEEEEEEEEEEEEeecCCCCeEEEEEEEECCCCEEEEEcHHHHH-HHHHHhccCCEEEEEEEEEECC-------Cc
Confidence 35788999999988763 444699999999999999998765321 2234589999999999995321 36
Q ss_pred EEEEEEEEEEec
Q psy8087 586 ELKVDYWEVVGL 597 (658)
Q Consensus 586 El~~~~i~vls~ 597 (658)
.|.++++.-++.
T Consensus 1112 ~l~~~~i~~l~~ 1123 (1220)
T 2hpi_A 1112 RVLAQAVWTLEE 1123 (1220)
T ss_dssp CEEEEEEEEHHH
T ss_pred EEEEeeeecHHH
Confidence 788888876654
|
| >3fhw_A Primosomal replication protein N; PRIB BPR162 X-RAY NESG, structural genomics, PSI-2, protein initiative; 1.90A {Bordetella parapertussis} PDB: 3dm4_A 3klw_A | Back alignment and structure |
|---|
Probab=82.44 E-value=16 Score=31.92 Aligned_cols=52 Identities=12% Similarity=-0.012 Sum_probs=39.8
Q ss_pred EEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCCCCCCCceEEEEEEEEEEecCC
Q psy8087 543 IQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEGKSAPGGHELKVDYWEVVGLAP 599 (658)
Q Consensus 543 iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~El~~~~i~vls~~~ 599 (658)
|+|++-.... +.+..|+.|+-|.|+|.+.... .. ...++|+++.|+.|+...
T Consensus 49 i~vv~~Gk~A--E~~~~l~kGs~V~VeGrL~trs-~~--G~kl~l~a~~Ie~l~~~~ 100 (115)
T 3fhw_A 49 ISAVALGDLA--LLLADTPLGTEMQVQGFLAPAR-KD--SVKVKLHLQQARRIAGSM 100 (115)
T ss_dssp EEEEEETHHH--HHHTTCCTTCEEEEEEEEEESS-TT--CSSEEEEEEEEEECCCSC
T ss_pred EEEEEEhHHH--HhhhccCCCCEEEEEEEEEECC-CC--CCEEEEEEEEEEEcCCCC
Confidence 8888877433 2246799999999999998753 11 256999999999997654
|
| >1sr3_A APO-CCME; OB fold, beta barrel, flexible C-terminal domain, chaperone; NMR {Escherichia coli} SCOP: b.40.9.1 | Back alignment and structure |
|---|
Probab=81.85 E-value=6.2 Score=35.66 Aligned_cols=76 Identities=22% Similarity=0.313 Sum_probs=55.0
Q ss_pred ccCCcEEEEEEEEE--ee-ecC-CCceEEEEEEeCCEEEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCCCCCCCc
Q psy8087 509 KYRDKRVTIFGWVH--RL-RRQ-GKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEGKSAPGG 584 (658)
Q Consensus 509 ~~~g~~V~v~GwI~--~~-R~~-Gkkl~Fi~Lrd~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~ 584 (658)
...|+.|+|.|.|. ++ |.. +..+.| .|.|++..|.|..++... ..++.|.-|.|+|.+.. +
T Consensus 25 ~~~g~~iRvgG~V~~GSv~r~~~~~~v~F-~vtD~~~~v~V~Y~GilP-----DlFrEGqgVVa~G~l~~--------~- 89 (136)
T 1sr3_A 25 PEVGQRLRVGGMVMPGSVQRDPNSLKVTF-TIYDAEGSVDVSYEGILP-----DLFREGQGVVVQGELEK--------G- 89 (136)
T ss_dssp CCTTSEEEEEEEECTTTCEECSSSSEEEE-EEECSSCEEEEEEESCCC-----TTCCTTSEEEEEEEECS--------S-
T ss_pred CCCCCEEEEeeEEeCCcEEEcCCCCEEEE-EEEeCCcEEEEEECCCCC-----ccccCCCeEEEEEEECC--------C-
Confidence 45789999999998 34 542 335776 678998899999987543 24789999999999932 1
Q ss_pred eEEEEEEEEEEecCCCC
Q psy8087 585 HELKVDYWEVVGLAPAG 601 (658)
Q Consensus 585 ~El~~~~i~vls~~~~~ 601 (658)
=.+.+++ ||.+|+.+
T Consensus 90 g~F~A~e--VLAKhdek 104 (136)
T 1sr3_A 90 NHILAKE--VLAKHDEN 104 (136)
T ss_dssp SEEEESS--CBCCSCCC
T ss_pred CeEEEEE--EEecCCCC
Confidence 1355554 78899753
|
| >2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A | Back alignment and structure |
|---|
Probab=81.55 E-value=3.1 Score=42.03 Aligned_cols=63 Identities=10% Similarity=0.075 Sum_probs=45.2
Q ss_pred cEEEEeEEeecceecCCCeEEEEEEcCCe-EEEEEEecccch-hhhhhcCCCccEEEEEEEeEeCC
Q psy8087 71 TNINIPAIPGPPAIPGKGLMFVTLRDGSG-FIQCVLADILCQ-TEHALLLSTESSVQFRGRIEKVP 134 (658)
Q Consensus 71 ~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~-~iQvv~~~~~~~-~~~~~~l~~es~V~v~G~l~~~p 134 (658)
..|++.|+|.++..... -.-+.|.|++| .|.+.+=.+... ......+..|+.|.|.|.++.-.
T Consensus 72 ~~V~ivG~V~~i~~~~~-~~~~~L~D~TG~~I~~k~W~~~~~~~~~~~~~~~G~yVrV~G~v~~f~ 136 (270)
T 2pi2_A 72 SQVTIVGIIRHAEKAPT-NIVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPPETYVKVAGHLRSFQ 136 (270)
T ss_dssp SEEEEEEEEEEEEECSS-EEEEEEECSSSSCEEEEEECC-------CCCCCTTCEEEEEEEEEEET
T ss_pred EEEEEEEEEEEEEeccc-eEEEEEECCCCCEEEEEEEcCcCcccchhhcCCCCCEEEEEEEEEecC
Confidence 46999999999876654 45558999999 798877543211 11224689999999999998643
|
| >1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B* | Back alignment and structure |
|---|
Probab=81.53 E-value=3.9 Score=47.75 Aligned_cols=99 Identities=19% Similarity=0.080 Sum_probs=63.0
Q ss_pred CchHHHhhhCCcEEEcCCccccccC----CCCccceee-ccCCc-ceeeccCHHHHHHHhcc-----c-C--CcEEEEee
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV----EGGSTLFSL-NFFGE-PAYLTQSSQLYLETCLP-----A-L--GDVYCIAQ 225 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~----eG~~~~F~~-~~~~~-~~~L~~Spqlylk~li~-----g-~--~rvfeI~~ 225 (658)
..+|+.|...||.|+-|-.++.... ......+.+ |-... .-.||+|-=--+=..+. + . -|+||+|+
T Consensus 496 ~~ir~~L~~~Gf~Evitysfvs~~~~~~l~~~~~~v~L~NPis~d~svLRtsLlpgLL~~l~~N~~r~~~~~vrlFEiG~ 575 (785)
T 1b7y_B 496 QRLREVLSGLGFQEVYTYSFMDPEDARRFRLDPPRLLLLNPLAPEKAALRTHLFPGLVRVLKENLDLDRPERALLFEVGR 575 (785)
T ss_dssp HHHHHHHHHHTCEECCCCSEECTTHHHHTTCCCCSCEESSCSSTTSSEECSCSHHHHHHHHHHHHHHSCCSCEEEEEEEE
T ss_pred HHHHHHHHHCCCEEEecCcccCHHHHHhcCCCCCeEEEcCCCchhhhhhhhhhHHHHHHHHHHHhhcCCCCCeEEEEEee
Confidence 4789999999999999988864321 001122322 22222 23677653222222221 3 2 27999999
Q ss_pred eeecCCCCCccCcceeeeeeeEeec------------CCHHHHHHHHHHHHHHH
Q psy8087 226 SYRAENSRTRRHLAEYTHVEAECAF------------LTFDDLLDKLEDLICDT 267 (658)
Q Consensus 226 ~FR~E~~~~~rHl~EFt~lE~e~a~------------~d~~~~m~~~e~li~~i 267 (658)
||| + +||.+|..-++. .|+.|+...+|.++..+
T Consensus 576 Vf~-~--------~e~~~lagl~~G~~~~~~w~~~~~vdf~dlKg~le~ll~~l 620 (785)
T 1b7y_B 576 VFR-E--------REETHLAGLLFGEGVGLPWAKERLSGYFLLKGYLEALFARL 620 (785)
T ss_dssp EES-S--------SEEEEEEEEEESSCBSCSSSSCCBCSHHHHHHHHHHHHHHH
T ss_pred eec-c--------ChhhEEEEEEECCCcccccCccCCcCHHHHHHHHHHHHHHc
Confidence 999 2 688899887665 47889888888887654
|
| >1j6q_A Cytochrome C maturation protein E; all-beta protein, heme delivery,cytochrome C maturation, OB- (oligonucleotide binding)fold; NMR {Shewanella putrefaciens} SCOP: b.40.9.1 PDB: 1lm0_A | Back alignment and structure |
|---|
Probab=81.08 E-value=8 Score=34.97 Aligned_cols=75 Identities=20% Similarity=0.275 Sum_probs=53.1
Q ss_pred ccCCcEEEEEEEEE--ee-ec-CCCceEEEEEEe-CCEEEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCCCCCCC
Q psy8087 509 KYRDKRVTIFGWVH--RL-RR-QGKGLMFVTLRD-GSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEGKSAPG 583 (658)
Q Consensus 509 ~~~g~~V~v~GwI~--~~-R~-~Gkkl~Fi~Lrd-~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g 583 (658)
...|+.|+|.|.|. ++ |. .|..+.| .|.| ++..|.|..++... ..++.|.-|.|+|.+.. .|
T Consensus 29 ~~~g~~iRvgG~V~~GSv~r~~~~~~v~F-~vtD~~~~~v~V~Y~GilP-----DlFrEGqgVVa~G~l~~-------~g 95 (136)
T 1j6q_A 29 PEAGQRIRVGGMVTVGSMVRDPNSLHVQF-AVHDSLGGEILVTYDDLLP-----DLFREGQGIVAQGVLGE-------DG 95 (136)
T ss_dssp SCTTCEEEEEEEECTTCCEECTTSSCEEE-EEECTTCCCEEEEECSCCT-----TSCCSSSEEEEEEEECS-------TT
T ss_pred CCCCCEEEEeEEEeCCcEEecCCCCEEEE-EEEcCCCCEEEEEECCCCC-----ccccCCCeEEEEEEECC-------CC
Confidence 46789999999995 44 54 2446777 6688 77789999987542 24789999999999932 12
Q ss_pred ceEEEEEEEEEEecCCC
Q psy8087 584 GHELKVDYWEVVGLAPA 600 (658)
Q Consensus 584 ~~El~~~~i~vls~~~~ 600 (658)
.+.+++ ||.+|+.
T Consensus 96 --~F~A~e--VLaKhde 108 (136)
T 1j6q_A 96 --KLAATE--VLAKHDE 108 (136)
T ss_dssp --SEEEEE--EECCC--
T ss_pred --eEEEEE--EEecCCC
Confidence 255555 7899975
|
| >2kct_A Cytochrome C-type biogenesis protein CCME; solution structure, heme chaperone, cytochrome C biogenesis, OB-fold domain, NESG, PSI-2; NMR {Desulfovibrio vulgaris str} | Back alignment and structure |
|---|
Probab=81.06 E-value=15 Score=30.93 Aligned_cols=75 Identities=20% Similarity=0.250 Sum_probs=53.4
Q ss_pred cCCcEEEEEEEEEe--e-ec-CCCceEEEEEEeC---CEEEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCCCCCC
Q psy8087 510 YRDKRVTIFGWVHR--L-RR-QGKGLMFVTLRDG---SGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEGKSAP 582 (658)
Q Consensus 510 ~~g~~V~v~GwI~~--~-R~-~Gkkl~Fi~Lrd~---~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~~~ 582 (658)
..+++++|.|-|.. + |. .|..+.| .|.|+ +..|.|.+++... ..++.|.-|.++|.+..
T Consensus 6 ~~~~~iRvgG~V~~GSv~r~~~~~~v~F-~vtD~~~~~~~v~V~Y~GilP-----DlFrEGqgVV~~G~l~~-------- 71 (94)
T 2kct_A 6 DKLHTVRLFGTVAADGLTMLDGAPGVRF-RLEDKDNTSKTVWVLYKGAVP-----DTFKPGVEVIIEGGLAP-------- 71 (94)
T ss_dssp CTTCCEEEEEEECSTTCEECTTSSEEEE-EEECSSCTTCEEEEEEESCCC-----TTCCTTCEEEEEEEECT--------
T ss_pred CCCCeEEEeeEEeCCeEEecCCCCEEEE-EEEcCCCCCcEEEEEECCCCC-----ccccCCCeEEEEEEEeC--------
Confidence 46889999999963 3 54 2446776 66887 7889999987543 24789999999999931
Q ss_pred CceEEEEEEEEEEecCCC
Q psy8087 583 GGHELKVDYWEVVGLAPA 600 (658)
Q Consensus 583 g~~El~~~~i~vls~~~~ 600 (658)
+.=.+.+++ ||.+|+.
T Consensus 72 ~~g~F~A~e--vLaKh~e 87 (94)
T 2kct_A 72 GEDTFKART--LMTKCPL 87 (94)
T ss_dssp TCSEEEEEE--EEESSCC
T ss_pred CCCEEEEeE--EEEeCCC
Confidence 012356655 7889964
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 658 | ||||
| d1n9wa2 | 304 | d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (As | 7e-48 | |
| d1n9wa2 | 304 | d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (As | 1e-04 | |
| d1nnha_ | 293 | d.104.1.1 (A:) Hypothetical protein PF1951 {Archae | 1e-39 | |
| d1nnha_ | 293 | d.104.1.1 (A:) Hypothetical protein PF1951 {Archae | 0.002 | |
| d1eova2 | 353 | d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (As | 4e-39 | |
| d1eova2 | 353 | d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (As | 1e-06 | |
| d1b8aa2 | 335 | d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (As | 4e-36 | |
| d1b8aa2 | 335 | d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (As | 7e-07 | |
| d1e1oa2 | 342 | d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS | 7e-35 | |
| d1e1oa2 | 342 | d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS | 1e-06 | |
| d1c0aa3 | 346 | d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synt | 6e-33 | |
| d1c0aa3 | 346 | d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synt | 1e-06 | |
| d1l0wa3 | 356 | d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synt | 1e-27 | |
| d1l0wa3 | 356 | d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synt | 2e-07 | |
| d1n9wa1 | 93 | b.40.4.1 (A:1-93) Aspartyl-tRNA synthetase (AspRS) | 1e-17 | |
| d1eova1 | 134 | b.40.4.1 (A:71-204) Aspartyl-tRNA synthetase (AspR | 5e-16 | |
| d1eova1 | 134 | b.40.4.1 (A:71-204) Aspartyl-tRNA synthetase (AspR | 6e-05 | |
| d1b8aa1 | 103 | b.40.4.1 (A:1-103) Aspartyl-tRNA synthetase (AspRS | 2e-14 | |
| d1b8aa1 | 103 | b.40.4.1 (A:1-103) Aspartyl-tRNA synthetase (AspRS | 0.002 | |
| d1l0wa1 | 104 | b.40.4.1 (A:1-104) Aspartyl-tRNA synthetase (AspRS | 2e-13 | |
| d1l0wa1 | 104 | b.40.4.1 (A:1-104) Aspartyl-tRNA synthetase (AspRS | 3e-04 | |
| d1c0aa1 | 106 | b.40.4.1 (A:1-106) Aspartyl-tRNA synthetase (AspRS | 3e-13 | |
| d1c0aa1 | 106 | b.40.4.1 (A:1-106) Aspartyl-tRNA synthetase (AspRS | 0.004 |
| >d1n9wa2 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]} Length = 304 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Thermus thermophilus, AspRS-2 [TaxId: 274]
Score = 168 bits (426), Expect = 7e-48
Identities = 80/278 (28%), Positives = 131/278 (47%), Gaps = 16/278 (5%)
Query: 169 NGIAKVTPPTLVQTQVEGGSTLFSLNFFGEPAYLTQSSQLYLETCLPALGDVYCIAQSYR 228
++ P +V+ EGGS LF +++F + AYL QS QLY + + VY +A +R
Sbjct: 32 QDFTEIFTPKVVRAGAEGGSGLFGVDYFEKRAYLAQSPQLYKQIMVGVFERVYEVAPVWR 91
Query: 229 AENSRTRRHLAEYTHVEAECAFLTF-DDLLDKLEDLICDTVDRVMATHGDLVRQMNPNFE 287
E T RHL EY ++ E F+ +DL+ E L+ + ++ + T GD +R + +
Sbjct: 92 MEEHHTSRHLNEYLSLDVEMGFIADEEDLMRLEEALLAEMLEEALNTAGDEIRLLGATWP 151
Query: 288 PPARPFLRMNYADAIEYLRKHEIRKPDNTEYEFGEDIPEMPERKMTDQINR-----PIML 342
+ R+ +A+A L++ Y G+D+ E ER + + + +
Sbjct: 152 SFPQDIPRLTHAEAKRILKEE-------LGYPVGQDLSEEAERLLGEYAKERWGSDWLFV 204
Query: 343 CRFPADIKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGIDPA 402
R+P ++ FY + L E+ G RI EELL K +G+DP
Sbjct: 205 TRYPRSVRPFYTYPEEDGTTR---SFDLLFRGLEITSGGQRIHRYEELLESLKAKGMDPE 261
Query: 403 PYYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRD 440
++ Y + KYG PHGG+ +G ER+ LL +VR
Sbjct: 262 AFHGYLEVFKYGMPPHGGFAIGAERLTQKLLGLPNVRY 299
|
| >d1n9wa2 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]} Length = 304 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Thermus thermophilus, AspRS-2 [TaxId: 274]
Score = 42.1 bits (98), Expect = 1e-04
Identities = 9/37 (24%), Positives = 22/37 (59%)
Query: 620 RHIMIRGENTSRVLLMRSVLLQALRAHFADRNYTEVN 656
R++ +RGE L +++ L++ R + +++TE+
Sbjct: 2 RYVTLRGEKARAPLKVQAALVRGFRRYLDRQDFTEIF 38
|
| >d1nnha_ d.104.1.1 (A:) Hypothetical protein PF1951 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 293 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Hypothetical protein PF1951 species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Score = 145 bits (366), Expect = 1e-39
Identities = 51/283 (18%), Positives = 102/283 (36%), Gaps = 45/283 (15%)
Query: 169 NGIAKVTPPTLVQTQV-------EGGSTLFSLNFFGEPAYLTQSSQLYLETCLP-ALGDV 220
G + P + G + +G LT S L+ + + L +
Sbjct: 31 EGFKWLLPVIISPITDPLWPDPAGEGMEPAEVEIYGVKMRLTHSMILHKQLAIAMGLKKI 90
Query: 221 YCIAQSYRAENSR--TRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGDL 278
+ ++ + R E+ + RH E+T ++ E +D++ +E L+ + G
Sbjct: 91 FVLSPNIRLESRQKDDGRHAYEFTQLDFEVERAKMEDIMRLIERLVYGLFRKAEEWTGR- 149
Query: 279 VRQMNPNFEPPARPFLRMNYADAIEYLRKHEIRKPDNTEYEFGEDIPEMPERKMTDQINR 338
P + F Y++ +E E + E + +IP + D R
Sbjct: 150 -------EFPKTKRFEVFEYSEVLEEFGSDEKASQEMEEPFWIINIPREFYDREVDGFWR 202
Query: 339 PIMLCRFPADIKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREG 398
L +L GEV G R W+ E+++A ++ G
Sbjct: 203 NYDL--------------------------ILPYGYGEVASGGEREWEYEKIVAKIRKAG 236
Query: 399 IDPAPYYWYTDQRKYGS-TPHGGYGLGLERVLCWLLNQYHVRD 440
++ + Y + K G P G G+G+ER++ +++ H+ +
Sbjct: 237 LNEDSFRPYLEIAKAGKLKPSAGAGIGVERLVRFIVGAKHIAE 279
|
| >d1nnha_ d.104.1.1 (A:) Hypothetical protein PF1951 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 293 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Hypothetical protein PF1951 species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Score = 38.6 bits (89), Expect = 0.002
Identities = 5/35 (14%), Positives = 14/35 (40%)
Query: 621 HIMIRGENTSRVLLMRSVLLQALRAHFADRNYTEV 655
+ I S L +++ +L+ + F + +
Sbjct: 2 AVEIISREISPTLDIQTKILEYMTDFFVKEGFKWL 36
|
| >d1eova2 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 145 bits (367), Expect = 4e-39
Identities = 80/283 (28%), Positives = 125/283 (44%), Gaps = 12/283 (4%)
Query: 168 ANGIAKVTPPTLVQTQVEGGSTLFSLNFFGEPAYLTQSSQLYLETCLPA-LGDVYCIAQS 226
+V P L+ EGGS++F + +F AYL QS Q + + A VY I
Sbjct: 60 TKKFTEVHTPKLLGAPSEGGSSVFEVTYFKGKAYLAQSPQFNKQQLIVADFERVYEIGPV 119
Query: 227 YRAENSRTRRHLAEYTHVEAECAFLT-FDDLLDKLEDLICDTVDRVMATHGDLVRQMNPN 285
+RAENS T RH+ E+T ++ E AF + ++LD L +L + + +
Sbjct: 120 FRAENSNTHRHMTEFTGLDMEMAFEEHYHEVLDTLSELFVFIFSELPKRFAHEIELVRKQ 179
Query: 286 FE------PPARPFLRMNYADAIEYLRKHEIRKPDNTEYEFGEDIPEMPERKMTDQINRP 339
+ P +R+ Y + IE LR ++ + E E+ + +
Sbjct: 180 YPVEEFKLPKDGKMVRLTYKEGIEMLRAA-GKEIGDFEDLSTENEKFLGKLVRDKYDTDF 238
Query: 340 IMLCRFPADIKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGI 399
+L +FP +I+ FY P NP + S F E++ G+ RI D L K G+
Sbjct: 239 YILDKFPLEIRPFYTMPDPANPKYSNS-YDFFMRGEEILSGAQRIHDHALLQERMKAHGL 297
Query: 400 DPAP--YYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRD 440
P Y D YG PH G G+GLERV+ + L+ ++R
Sbjct: 298 SPEDPGLKDYCDGFSYGCPPHAGGGIGLERVVMFYLDLKNIRR 340
|
| >d1eova2 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 48.7 bits (115), Expect = 1e-06
Identities = 11/42 (26%), Positives = 22/42 (52%)
Query: 614 DVQLDNRHIMIRGENTSRVLLMRSVLLQALRAHFADRNYTEV 655
D +LD R I +R + +++ + + R + A + +TEV
Sbjct: 25 DTRLDYRVIDLRTVTNQAIFRIQAGVCELFREYLATKKFTEV 66
|
| >d1b8aa2 d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]} Length = 335 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Archaeon Pyrococcus kodakaraensis [TaxId: 311400]
Score = 136 bits (343), Expect = 4e-36
Identities = 79/274 (28%), Positives = 136/274 (49%), Gaps = 4/274 (1%)
Query: 169 NGIAKVTPPTLVQTQVEGGSTLFSLNFFGEPAYLTQSSQLYLETCLPA-LGDVYCIAQSY 227
NG ++ P ++ T EGG+ LF + +F E A+L +S QLY E + + L VY IA +
Sbjct: 51 NGFIEIHTPKIIATATEGGTELFPMKYFEEDAFLAESPQLYKEIMMASGLDRVYEIAPIF 110
Query: 228 RAENSRTRRHLAE-YTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGDLVRQMNPNF 286
RAE T RHL E ++ ++++ LE L+ ++ V + + +N
Sbjct: 111 RAEEHNTTRHLNEAWSIDSEMAFIEDEEEVMSFLERLVAHAINYVREHNAKELDILNFEL 170
Query: 287 EPPARPFLRMNYADAIEYLRKHEIRKPDNTEYEFGEDIPEMPERKMTDQINRPIMLCRFP 346
E P PF R++Y A+E L P E E + + M ++ L ++P
Sbjct: 171 EEPKLPFPRVSYDKALEILGDLGKEIPWG-EDIDTEGERLLGKYMMENENAPLYFLYQYP 229
Query: 347 ADIKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGIDPAPYYW 406
++ K FY+ K P + + D+ + V E+ G R + L+ K +G++P + +
Sbjct: 230 SEAKPFYIMKYDNKPEICRAFDLEYRGV-EISSGGQREHRHDILVEQIKEKGLNPESFEF 288
Query: 407 YTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRD 440
Y +YG PHGG+GLG ER++ +L+ ++R+
Sbjct: 289 YLKAFRYGMPPHGGFGLGAERLIKQMLDLPNIRE 322
|
| >d1b8aa2 d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]} Length = 335 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Archaeon Pyrococcus kodakaraensis [TaxId: 311400]
Score = 49.5 bits (117), Expect = 7e-07
Identities = 11/42 (26%), Positives = 23/42 (54%)
Query: 614 DVQLDNRHIMIRGENTSRVLLMRSVLLQALRAHFADRNYTEV 655
D +L+NR + +R + +RS + +A+R F + + E+
Sbjct: 15 DTRLNNRFMDLRRPEVMAIFKIRSSVFKAVRDFFHENGFIEI 56
|
| >d1e1oa2 d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS) {Escherichia coli, gene lysU [TaxId: 562]} Length = 342 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Lysyl-tRNA synthetase (LysRS) species: Escherichia coli, gene lysU [TaxId: 562]
Score = 133 bits (335), Expect = 7e-35
Identities = 57/300 (19%), Positives = 107/300 (35%), Gaps = 32/300 (10%)
Query: 168 ANGIAKVTPPTLVQTQVEGGSTLF--SLNFFGEPAYLTQSSQLYLETCLPALGDVYCIAQ 225
A G +V P + + F N YL + +LYL+ + +
Sbjct: 39 ARGFMEVETPMMQVIPGGASARPFITHHNALDLDMYLRIAPELYLKRLVVGGFERVFEIN 98
Query: 226 SYRAENSRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGDLVRQMNPN 285
+ RH E+T +E A+ + DL++ E L V+ T +
Sbjct: 99 RNFRNEGISVRHNPEFTMMELYMAYADYHDLIELTESLFRTLAQEVLGTT---KVTYGEH 155
Query: 286 FEPPARPFLRMNYADAIEYLRKHEIRKPDNT-----------------EYEFGEDIPEMP 328
+PF ++ +AI+ R + + G + E+
Sbjct: 156 VFDFGKPFEKLTMREAIKKYRPETDMADLDNFDAAKALAESIGITVEKSWGLGRIVTEIF 215
Query: 329 ERKMTDQINRPIMLCRFPADIKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPE 388
+ + +P + +PA++ + NP +T+ + F E+ G + D E
Sbjct: 216 DEVAEAHLIQPTFITEYPAEVSPLAR-RNDVNPEITDRFE-FFIGGREIGNGFSELNDAE 273
Query: 389 ELLAGY------KREGIDPAPYY--WYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRD 440
+ + K G D A +Y Y +YG P G G+G++R++ N + +RD
Sbjct: 274 DQAERFQEQVNAKAAGDDEAMFYDEDYVTALEYGLPPTAGLGIGIDRMIMLFTNSHTIRD 333
|
| >d1e1oa2 d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS) {Escherichia coli, gene lysU [TaxId: 562]} Length = 342 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Lysyl-tRNA synthetase (LysRS) species: Escherichia coli, gene lysU [TaxId: 562]
Score = 48.7 bits (115), Expect = 1e-06
Identities = 11/45 (24%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 613 PDVQLDNRHI-MIRGENTSRVLLMRSVLLQALRAHFADRNYTEVN 656
+V+ R++ +I + + + ++RS +L A+R R + EV
Sbjct: 2 QEVRYRQRYLDLIANDKSRQTFVVRSKILAAIRQFMVARGFMEVE 46
|
| >d1c0aa3 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]} Length = 346 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Escherichia coli [TaxId: 562]
Score = 127 bits (320), Expect = 6e-33
Identities = 66/281 (23%), Positives = 110/281 (39%), Gaps = 27/281 (9%)
Query: 169 NGIAKVTPPTLVQTQVEGGS--TLFSLNFFGEPAYLTQSSQLYLETCLPALGDVY-CIAQ 225
+G + P L + EG + S G+ L QS QL+ + + + D Y I +
Sbjct: 49 HGFLDIETPMLTKATPEGARDYLVPSRVHKGKFYALPQSPQLFKQLLMMSGFDRYYQIVK 108
Query: 226 SYRAENSRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGDLVRQMNPN 285
+R E+ R R E+T ++ E +F+T + + +E L+ V
Sbjct: 109 CFRDEDLRADRQ-PEFTQIDVETSFMTAPQVREVMEALVRHLWLEVKGVDLG-------- 159
Query: 286 FEPPARPFLRMNYADAIEYL--RKHEIRKPDNTEYEFGEDIPEMPERKMTDQINRPIMLC 343
F M +A+A K ++R + D P M E +
Sbjct: 160 ------DFPVMTFAEAERRYGSDKPDLRDESKWAPLWVIDFP-MFEDDGEGGLTAMHHPF 212
Query: 344 RFPADIKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGIDPAP 403
P D+ + + PEN + D+ N EV GGS+RI + + + GI+
Sbjct: 213 TSPKDMTAAELKAAPENAV-ANAYDM-VINGYEVGGGSVRIHNGDMQQTVFGILGINEEE 270
Query: 404 ----YYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRD 440
+ + D KYG+ PH G GL+R+ L ++RD
Sbjct: 271 QREKFGFLLDALKYGTPPHAGLAFGLDRLTMLLTGTDNIRD 311
|
| >d1c0aa3 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]} Length = 346 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Escherichia coli [TaxId: 562]
Score = 48.2 bits (114), Expect = 1e-06
Identities = 8/49 (16%), Positives = 21/49 (42%)
Query: 608 NEEALPDVQLDNRHIMIRGENTSRVLLMRSVLLQALRAHFADRNYTEVN 656
N + +L R++ +R ++ L R+ + +R D + ++
Sbjct: 7 NHVNTEEARLKYRYLDLRRPEMAQRLKTRAKITSLVRRFMDDHGFLDIE 55
|
| >d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]} Length = 356 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Thermus thermophilus, AspRS-1 [TaxId: 274]
Score = 112 bits (281), Expect = 1e-27
Identities = 64/283 (22%), Positives = 113/283 (39%), Gaps = 28/283 (9%)
Query: 168 ANGIAKVTPPTLVQTQVEGGSTLFSL--NFFGEPAYLTQSSQLYLETCLPA-LGDVYCIA 224
G +V P L ++ EG + G L QS QL+ + + A L + IA
Sbjct: 56 REGFVQVETPFLTKSTPEGARDFLVPYRHEPGLFYALPQSPQLFKQMLMVAGLDRYFQIA 115
Query: 225 QSYRAENSRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGDLVRQMNP 284
+ +R E+ R R ++T ++ E +F+ +D+L+ E L+ + L
Sbjct: 116 RCFRDEDLRADRQ-PDFTQLDLEMSFVEVEDVLELNERLMAHVFREALGVELPL------ 168
Query: 285 NFEPPARPFLRMNYADAI-EYLRKHEIRKPDNTEYEFGEDIP--EMPERKMTDQINRPIM 341
PF R++Y +A+ Y + + + + D P E E +
Sbjct: 169 -------PFPRLSYEEAMERYGSDKPDLRREGFRFLWVVDFPLLEWDEEEEAWTYMHHPF 221
Query: 342 LCRFPADIKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGIDP 401
P D + + + D+ N EV GGS+RI DP ++ GI
Sbjct: 222 TSPHPED---LPLLEKDPGRVRALAYDL-VLNGVEVGGGSIRIHDPRLQARVFRLLGIGE 277
Query: 402 AP----YYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRD 440
+ ++ + +YG+ PHGG GL+R+L + +R+
Sbjct: 278 EEQREKFGFFLEALEYGAPPHGGIAWGLDRLLALMTGSPSIRE 320
|
| >d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]} Length = 356 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Thermus thermophilus, AspRS-1 [TaxId: 274]
Score = 50.9 bits (121), Expect = 2e-07
Identities = 9/48 (18%), Positives = 23/48 (47%)
Query: 608 NEEALPDVQLDNRHIMIRGENTSRVLLMRSVLLQALRAHFADRNYTEV 655
+EA +++L R++ +R L +R +++A+ + +V
Sbjct: 15 EKEASEELRLKYRYLDLRRRRMQENLRLRHRVIKAIWDFLDREGFVQV 62
|
| >d1n9wa1 b.40.4.1 (A:1-93) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]} Length = 93 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Aspartyl-tRNA synthetase (AspRS) species: Thermus thermophilus, AspRS-2 [TaxId: 274]
Score = 76.4 bits (188), Expect = 1e-17
Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 11/99 (11%)
Query: 500 VRIKIKDGEKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILCQTEHALL 559
+R+ ++D + + + V + G++H R G+ + F+ LRD SG +Q T L
Sbjct: 1 MRVLVRDLKAHVGQEVELLGFLHWRRDLGR-IQFLLLRDRSGVVQ-------VVTGGLKL 52
Query: 560 LSTESSVQFRGRIEKVPEGKSAPGGHELKVDYWEVVGLA 598
ES+++ RG V E APGG E++ EV+ A
Sbjct: 53 PLPESALRVRG---LVVENAKAPGGLEVQAKEVEVLSPA 88
|
| >d1eova1 b.40.4.1 (A:71-204) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 134 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Aspartyl-tRNA synthetase (AspRS) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 73.2 bits (179), Expect = 5e-16
Identities = 31/110 (28%), Positives = 45/110 (40%), Gaps = 10/110 (9%)
Query: 500 VRIKIKD--GEKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVL------ADIL 551
R+K D K DK V VH R+QG L F+TLR + IQ ++
Sbjct: 22 KRVKFVDLDEAKDSDKEVLFRARVHNTRQQGATLAFLTLRQQASLIQGLVKANKEGTISK 81
Query: 552 CQTEHALLLSTESSVQFRGRIEKVPEG--KSAPGGHELKVDYWEVVGLAP 599
+ A L+ ES V RG ++KV E + E+ + + P
Sbjct: 82 NMVKWAGSLNLESIVLVRGIVKKVDEPIKSATVQNLEIHITKIYTISETP 131
|
| >d1eova1 b.40.4.1 (A:71-204) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 134 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Aspartyl-tRNA synthetase (AspRS) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.2 bits (96), Expect = 6e-05
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 6/58 (10%)
Query: 86 GKGLMFVTLRDGSGFIQCVL------ADILCQTEHALLLSTESSVQFRGRIEKVPEEN 137
G L F+TLR + IQ ++ + A L+ ES V RG ++KV E
Sbjct: 52 GATLAFLTLRQQASLIQGLVKANKEGTISKNMVKWAGSLNLESIVLVRGIVKKVDEPI 109
|
| >d1b8aa1 b.40.4.1 (A:1-103) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]} Length = 103 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Aspartyl-tRNA synthetase (AspRS) species: Archaeon Pyrococcus kodakaraensis [TaxId: 311400]
Score = 67.0 bits (163), Expect = 2e-14
Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 7/94 (7%)
Query: 508 EKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADIL---CQTEHALLLSTES 564
E+ ++V + GWV ++ G + F+ +RD G +Q + L +E
Sbjct: 12 EELNGQKVKVAGWVWEVKDLGG-IKFLWIRDRDGIVQITAPKKKVDPELFKLIPKLRSED 70
Query: 565 SVQFRGRIEKVPEGKSAPGGHELKVDYWEVVGLA 598
V G + P+ G E+ + V+ A
Sbjct: 71 VVAVEGVVNFTPKA---KLGFEILPEKIVVLNRA 101
|
| >d1b8aa1 b.40.4.1 (A:1-103) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]} Length = 103 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Aspartyl-tRNA synthetase (AspRS) species: Archaeon Pyrococcus kodakaraensis [TaxId: 311400]
Score = 36.2 bits (83), Expect = 0.002
Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 3/60 (5%)
Query: 87 KGLMFVTLRDGSGFIQCVLADIL---CQTEHALLLSTESSVQFRGRIEKVPEENMKVQLI 143
G+ F+ +RD G +Q + L +E V G + P+ + +++
Sbjct: 32 GGIKFLWIRDRDGIVQITAPKKKVDPELFKLIPKLRSEDVVAVEGVVNFTPKAKLGFEIL 91
|
| >d1l0wa1 b.40.4.1 (A:1-104) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]} Length = 104 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Aspartyl-tRNA synthetase (AspRS) species: Thermus thermophilus, AspRS-1 [TaxId: 274]
Score = 64.7 bits (157), Expect = 2e-13
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 3/93 (3%)
Query: 508 EKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQ 567
E + + V + GWV+R R G + F+ LRD G +Q V A + E V+
Sbjct: 12 ETHVGEEVVLEGWVNRRRDLGGLI-FLDLRDREGLVQLVAHPASPAYATAERVRPEWVVR 70
Query: 568 FRGRIEKVPEG--KSAPGGHELKVDYWEVVGLA 598
+G + PE + A G E+++ EV+ A
Sbjct: 71 AKGLVRLRPEPNPRLATGRVEVELSALEVLAEA 103
|
| >d1l0wa1 b.40.4.1 (A:1-104) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]} Length = 104 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Aspartyl-tRNA synthetase (AspRS) species: Thermus thermophilus, AspRS-1 [TaxId: 274]
Score = 38.1 bits (88), Expect = 3e-04
Identities = 16/53 (30%), Positives = 24/53 (45%)
Query: 87 KGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEENMK 139
GL+F+ LRD G +Q V A + E V+ +G + PE N +
Sbjct: 32 GGLIFLDLRDREGLVQLVAHPASPAYATAERVRPEWVVRAKGLVRLRPEPNPR 84
|
| >d1c0aa1 b.40.4.1 (A:1-106) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]} Length = 106 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Aspartyl-tRNA synthetase (AspRS) species: Escherichia coli [TaxId: 562]
Score = 63.9 bits (155), Expect = 3e-13
Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 6/96 (6%)
Query: 508 EKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVL-ADILCQTEHALLLSTESSV 566
+ ++VT+ GWV+R R G + F+ +RD G +Q D + A L E +
Sbjct: 11 LSHVGQQVTLCGWVNRRRDLGSLI-FIDMRDREGIVQVFFDPDRADALKLASELRNEFCI 69
Query: 567 QFRGRIEKVPEG----KSAPGGHELKVDYWEVVGLA 598
Q G + E A G E+ ++ A
Sbjct: 70 QVTGTVRARDEKNINRDMATGEIEVLASSLTIINRA 105
|
| >d1c0aa1 b.40.4.1 (A:1-106) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]} Length = 106 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Aspartyl-tRNA synthetase (AspRS) species: Escherichia coli [TaxId: 562]
Score = 35.0 bits (80), Expect = 0.004
Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 87 KGLMFVTLRDGSGFIQCVL-ADILCQTEHALLLSTESSVQFRGRIEKVPEEN 137
L+F+ +RD G +Q D + A L E +Q G + E+N
Sbjct: 31 GSLIFIDMRDREGIVQVFFDPDRADALKLASELRNEFCIQVTGTVRARDEKN 82
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 658 | |||
| d1eova2 | 353 | Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (S | 100.0 | |
| d1e1oa2 | 342 | Lysyl-tRNA synthetase (LysRS) {Escherichia coli, g | 100.0 | |
| d1b8aa2 | 335 | Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococ | 100.0 | |
| d1n9wa2 | 304 | Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph | 100.0 | |
| d1c0aa3 | 346 | Aspartyl-tRNA synthetase (AspRS) {Escherichia coli | 100.0 | |
| d1l0wa3 | 356 | Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph | 100.0 | |
| d1nnha_ | 293 | Hypothetical protein PF1951 {Archaeon Pyrococcus f | 100.0 | |
| d1l0wa1 | 104 | Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph | 99.77 | |
| d1e1oa1 | 143 | Lysyl-tRNA synthetase (LysRS) {Escherichia coli, g | 99.76 | |
| d1n9wa1 | 93 | Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph | 99.76 | |
| d1c0aa1 | 106 | Aspartyl-tRNA synthetase (AspRS) {Escherichia coli | 99.74 | |
| d1b8aa1 | 103 | Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococ | 99.73 | |
| d1eova1 | 134 | Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (S | 99.72 | |
| d1b8aa1 | 103 | Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococ | 99.44 | |
| d1c0aa1 | 106 | Aspartyl-tRNA synthetase (AspRS) {Escherichia coli | 99.42 | |
| d1l0wa1 | 104 | Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph | 99.39 | |
| d1e1oa1 | 143 | Lysyl-tRNA synthetase (LysRS) {Escherichia coli, g | 99.38 | |
| d1eova1 | 134 | Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (S | 99.31 | |
| d1n9wa1 | 93 | Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph | 99.29 | |
| d1eova2 | 353 | Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (S | 98.96 | |
| d1l0wa3 | 356 | Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph | 98.96 | |
| d1jjca_ | 266 | Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS | 98.91 | |
| d12asa_ | 327 | Asparagine synthetase {Escherichia coli [TaxId: 56 | 98.25 | |
| d1kmma2 | 322 | Histidyl-tRNA synthetase (HisRS) {Escherichia coli | 97.8 | |
| d1qe0a2 | 325 | Histidyl-tRNA synthetase (HisRS) {Staphylococcus a | 97.79 | |
| d1nyra4 | 291 | Threonyl-tRNA synthetase (ThrRS) {Staphylococcus a | 97.25 | |
| d1z7ma1 | 318 | ATP phosphoribosyltransferase regulatory subunit H | 97.22 | |
| d1qf6a4 | 291 | Threonyl-tRNA synthetase (ThrRS) {Escherichia coli | 97.01 | |
| d1hc7a2 | 272 | Prolyl-tRNA synthetase (ProRS) {Thermus thermophil | 96.6 | |
| d1wu7a2 | 327 | Histidyl-tRNA synthetase (HisRS) {Archaeon Thermop | 96.06 | |
| d1b76a2 | 331 | Glycyl-tRNA synthetase (GlyRS) {Thermus thermophil | 95.78 | |
| d1h4vb2 | 324 | Histidyl-tRNA synthetase (HisRS) {Thermus thermoph | 95.58 | |
| d1seta2 | 311 | Seryl-tRNA synthetase (SerRS) {Thermus thermophilu | 95.44 | |
| d1nj8a3 | 268 | Prolyl-tRNA synthetase (ProRS) {Archaeon (Methanoc | 95.42 | |
| d1nnxa_ | 106 | Hypothetical protein YgiW {Escherichia coli [TaxId | 94.87 | |
| d2pi2a1 | 128 | Replication protein A 32 KDa subunit (RPA32) fragm | 94.82 | |
| d1nj1a3 | 265 | Prolyl-tRNA synthetase (ProRS) {Arhaeon (Methanoth | 93.75 | |
| d1usya_ | 275 | ATP phosphoribosyltransferase regulatory subunit H | 93.71 | |
| d1jmca1 | 116 | Replication protein A 70 KDa subunit (RPA70) {Huma | 93.04 | |
| d2pi2e1 | 115 | Replication protein A 14 KDa (RPA14) subunit {Huma | 92.65 | |
| d1o7ia_ | 115 | Archaeal ssDNA-binding protein {Archaeon Sulfolobu | 91.89 | |
| d2pi2a1 | 128 | Replication protein A 32 KDa subunit (RPA32) fragm | 91.39 | |
| d1nnxa_ | 106 | Hypothetical protein YgiW {Escherichia coli [TaxId | 89.36 | |
| d1v1qa_ | 111 | Primosomal replication protein N, PriB {Escherichi | 88.4 | |
| d1g5ha2 | 290 | The aaRS-like accessory subunit of mitochondrial p | 87.88 | |
| d1gm5a2 | 180 | RecG "wedge" domain {Thermotoga maritima [TaxId: 2 | 85.61 | |
| d3ulla_ | 115 | ssDNA-binding protein {Human (Homo sapiens), mitoc | 83.62 | |
| d1atia2 | 394 | Glycyl-tRNA synthetase (GlyRS) {Thermus thermophil | 83.2 | |
| d1jmca1 | 116 | Replication protein A 70 KDa subunit (RPA70) {Huma | 80.37 |
| >d1eova2 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=5.1e-75 Score=623.13 Aligned_cols=300 Identities=29% Similarity=0.464 Sum_probs=259.5
Q ss_pred ccceEecCCCceeEEeecCCccc---------CchHHHhhhCCcEEEcCCccccccCCCCccceeeccCCcceeeccCHH
Q psy8087 137 NMKVQLIHPSSYAIVWLGDLKQG---------GYPPEVSLANGIAKVTPPTLVQTQVEGGSTLFSLNFFGEPAYLTQSSQ 207 (658)
Q Consensus 137 ~~d~~l~~p~~R~l~lr~~~~~~---------~~iR~fl~~~gF~EV~TPiL~~~~~eG~~~~F~~~~~~~~~~L~~Spq 207 (658)
.+|+|++| ||||||++..++ ++||+||.++||+||+||+|+++++|||+++|.+.+++.++||+||||
T Consensus 23 ~~e~r~~~---R~lDlr~~~~~~ilr~Rs~i~~~iR~ff~~~gflEV~TPiL~~~~~eg~~~~f~~~~~~~~~yL~~Spe 99 (353)
T d1eova2 23 NLDTRLDY---RVIDLRTVTNQAIFRIQAGVCELFREYLATKKFTEVHTPKLLGAPSEGGSSVFEVTYFKGKAYLAQSPQ 99 (353)
T ss_dssp CHHHHHHT---HHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCSSSSSCCCEEEETTEEEEECSCTH
T ss_pred CHHHHhhh---hHHhhCCHhHHHHHHHHHHHHHHHHHHHHHCCCEEEECCccCCCCCcchhccccceeeCCcceeccchh
Confidence 37889998 999999875543 699999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcc-cCCcEEEEeeeeecCCCCCccCcceeeeeeeEeecCC-HHHHHHHHHHHHHHHHHHHhhccccccccc---
Q psy8087 208 LYLETCLP-ALGDVYCIAQSYRAENSRTRRHLAEYTHVEAECAFLT-FDDLLDKLEDLICDTVDRVMATHGDLVRQM--- 282 (658)
Q Consensus 208 lylk~li~-g~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~a~~d-~~~~m~~~e~li~~i~~~~~~~~~~~~~~~--- 282 (658)
||||+|++ |++||||||||||||++++.||||||||||||++|.| ++++|+++|+|+.+++..+...+...+..+
T Consensus 100 l~lk~ll~~g~~~vf~I~~~FR~E~~~~~rH~pEFtmLE~y~a~~d~~~~i~~~~e~l~~~~~~~~~~~~~~~~~~~~~~ 179 (353)
T d1eova2 100 FNKQQLIVADFERVYEIGPVFRAENSNTHRHMTEFTGLDMEMAFEEHYHEVLDTLSELFVFIFSELPKRFAHEIELVRKQ 179 (353)
T ss_dssp HHHHHHHHTTCCEEEEEEEEECCCCCCCTTCCSEEEEEEEEEECSSCTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred hhhhhhhhcccccceeechhhhccccccccccchhcccccccccchhhHHHHHHHHHHHhhhccccchhhhhhhhhhccc
Confidence 99999987 7999999999999999999899999999999999996 899999999999999998876653222111
Q ss_pred -C-CCC-CCCCCCcceeeHHHHHHHHHHcCCCCCCCCCcccCCCCCCch----hhhhhcccCC-cEEEEeCCCCCCCCCC
Q psy8087 283 -N-PNF-EPPARPFLRMNYADAIEYLRKHEIRKPDNTEYEFGEDIPEMP----ERKMTDQINR-PIMLCRFPADIKSFYM 354 (658)
Q Consensus 283 -~-~~~-~~~~~pf~rit~~ea~~~l~~~g~~~~~~~~~~~g~~l~~~~----e~~l~~~~~~-p~fi~~~P~~~~pfy~ 354 (658)
. ..+ .....+|.+++|.||++.+++.+....+ ..++.... ++++++.+.. ++||+|||.+++|||+
T Consensus 180 ~~~~~~~~~~~~~~~ri~~~ea~~~l~~~~~~~~~------~~~~~~~~~~~l~~~i~~~~~~~~~~i~~~P~~~~p~~~ 253 (353)
T d1eova2 180 YPVEEFKLPKDGKMVRLTYKEGIEMLRAAGKEIGD------FEDLSTENEKFLGKLVRDKYDTDFYILDKFPLEIRPFYT 253 (353)
T ss_dssp SCCCCCCCCTTCCCEEEEHHHHHHHHHHTTCCCCT------TCCCCHHHHHHHHHHHHHHSCCSEEEEECCBGGGSCTTB
T ss_pred CccceeeccCCCceeeeehHhhHHHHHHHhhhccc------ccccchhhHHHHHHHHHhhccCCcccccCCcHHHhhhhh
Confidence 1 111 1224589999999999999887654332 22333333 4455555554 5788899999999999
Q ss_pred ccCCCCcCceeEEEEEeCCcceeeeceeccCCHHHHHHHHHHcCCCCCC--CcchHHHhhcCCCCccceecchhHHHHHH
Q psy8087 355 SKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGIDPAP--YYWYTDQRKYGSTPHGGYGLGLERVLCWL 432 (658)
Q Consensus 355 ~~~~~~~~~~~~fdL~~~G~~Ei~~G~~r~~d~~~~~~~~~~~g~~~~~--~~~yl~a~~~G~pP~gG~GiGidRL~m~l 432 (658)
+.+++++++++|||||++|+ ||||||+|+||+++|++||+++|++++. ++|||+|++||||||||||||||||+|++
T Consensus 254 ~~~~~~~~~a~rfeL~~~G~-El~nG~~e~~d~~~~~~r~~~~~~~~~~~~~~~yl~al~~G~PP~~G~glGiDRL~m~l 332 (353)
T d1eova2 254 MPDPANPKYSNSYDFFMRGE-EILSGAQRIHDHALLQERMKAHGLSPEDPGLKDYCDGFSYGCPPHAGGGIGLERVVMFY 332 (353)
T ss_dssp CBCSSCTTBBSEEEEEETTE-EEEEEEEBCCCHHHHHHHHHHTTCCTTSTTTHHHHHHHTTCCCCEEEEEEEHHHHHHHH
T ss_pred CCChhhhhhhhceeeeeece-EEcceecccCCHHHHHHHHHHcCCChhhhHHHHHHHHhHcCCCCCceeeeHHHHHHHHH
Confidence 99999999999999999995 9999999999999999999999998764 89999999999999999999999999999
Q ss_pred hcccCcchhhHHHH
Q psy8087 433 LNQYHVRDKYQLIA 446 (658)
Q Consensus 433 ~g~~~Irdvi~f~~ 446 (658)
+|.+||||||+||.
T Consensus 333 ~~~~~Irdvi~FPr 346 (353)
T d1eova2 333 LDLKNIRRASLFPR 346 (353)
T ss_dssp TTCSSGGGGCSSCC
T ss_pred hCCCcHHheeCCCC
Confidence 99999999999984
|
| >d1e1oa2 d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS) {Escherichia coli, gene lysU [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Lysyl-tRNA synthetase (LysRS) species: Escherichia coli, gene lysU [TaxId: 562]
Probab=100.00 E-value=1.8e-71 Score=593.18 Aligned_cols=296 Identities=20% Similarity=0.345 Sum_probs=245.8
Q ss_pred ceEecCCCceeEEeecC-Cccc---------CchHHHhhhCCcEEEcCCccccccCCCCccce--eeccCCcceeeccCH
Q psy8087 139 KVQLIHPSSYAIVWLGD-LKQG---------GYPPEVSLANGIAKVTPPTLVQTQVEGGSTLF--SLNFFGEPAYLTQSS 206 (658)
Q Consensus 139 d~~l~~p~~R~l~lr~~-~~~~---------~~iR~fl~~~gF~EV~TPiL~~~~~eG~~~~F--~~~~~~~~~~L~~Sp 206 (658)
|+|++| ||||||++ ..++ +++|+||.++||+||+||+|+.+.+||++++| +.++|+.++||+|||
T Consensus 3 ~~Rl~~---R~lDl~r~~~~~~~~r~Rs~i~~~iR~ff~~~gFiEV~TPil~~~~~~~~~~~f~~~~~~~~~~~yL~~Sp 79 (342)
T d1e1oa2 3 EVRYRQ---RYLDLIANDKSRQTFVVRSKILAAIRQFMVARGFMEVETPMMQVIPGGASARPFITHHNALDLDMYLRIAP 79 (342)
T ss_dssp THHHHT---HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTTTCEECCCCSEESSCCSSCCCCCEEEETTTTEEEEECSCS
T ss_pred Hhhhhc---chhhhcCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCccccCCCCCCcceeecccCCCcccccchhh
Confidence 678888 99999444 3332 69999999999999999999877787778888 568999999999999
Q ss_pred HHHHHHhcc-cCCcEEEEeeeeecCCCCCccCcceeeeeeeEeecCCHHHHHHHHHHHHHHHHHHHhhcccccccccCCC
Q psy8087 207 QLYLETCLP-ALGDVYCIAQSYRAENSRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGDLVRQMNPN 285 (658)
Q Consensus 207 qlylk~li~-g~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~a~~d~~~~m~~~e~li~~i~~~~~~~~~~~~~~~~~~ 285 (658)
|||||++++ |++|||+||||||||++++ ||+||||||||||+|+|++|+|+++|+|+++++..+.+.+.........+
T Consensus 80 ql~~k~~l~~g~~~vf~i~p~FR~E~~~~-rHl~EFtmlE~e~a~~~~~d~m~~~e~l~~~i~~~~~~~~~~~~~~~~~~ 158 (342)
T d1e1oa2 80 ELYLKRLVVGGFERVFEINRNFRNEGISV-RHNPEFTMMELYMAYADYHDLIELTESLFRTLAQEVLGTTKVTYGEHVFD 158 (342)
T ss_dssp HHHHHHHHHHTCCEEEEEEEEECCCCCCC--CCSEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHHSSSEEEETTEEEE
T ss_pred HHHHHHHhhhcccceeeeccccccccccc-cchHHHHHHHHHHHhhhhhhHHHhhhHHHHHHHHHHhCcchhhccchhcc
Confidence 999998887 8999999999999999865 99999999999999999999999999999999999987664333222222
Q ss_pred CCCCCCCcceeeHHHHHHHHHH-------------------cCCCCCCCCCcccCCCCCCchhhhhhcccCCcEEEEeCC
Q psy8087 286 FEPPARPFLRMNYADAIEYLRK-------------------HEIRKPDNTEYEFGEDIPEMPERKMTDQINRPIMLCRFP 346 (658)
Q Consensus 286 ~~~~~~pf~rit~~ea~~~l~~-------------------~g~~~~~~~~~~~g~~l~~~~e~~l~~~~~~p~fi~~~P 346 (658)
...||+++++.++++.+.. .|+..+ ..+.+++.+...++..+++++..|+||+|||
T Consensus 159 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~p~fi~~~P 233 (342)
T d1e1oa2 159 ---FGKPFEKLTMREAIKKYRPETDMADLDNFDAAKALAESIGITVE--KSWGLGRIVTEIFDEVAEAHLIQPTFITEYP 233 (342)
T ss_dssp ---TTSCCEEEEHHHHHHHHSTTCCGGGGGSHHHHHHHHHHTTCCCC--TTCCHHHHHHHHHHHHTGGGCCSCEEEECCB
T ss_pred ---cCCchhhhhHHHHHHHHhccccHhhhhhhHHHHHHHHHcCCCcc--cccchhHHHHHHHHHhhHhhccCCCcCCCCc
Confidence 2479999999999986421 122111 1123334445566777788889999999999
Q ss_pred CCCCCCCCccCCCCcCceeEEEEEeCCcceeeeceeccCCHHHHHHHHHHc------CCCCCC--CcchHHHhhcCCCCc
Q psy8087 347 ADIKSFYMSKCPENPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKRE------GIDPAP--YYWYTDQRKYGSTPH 418 (658)
Q Consensus 347 ~~~~pfy~~~~~~~~~~~~~fdL~~~G~~Ei~~G~~r~~d~~~~~~~~~~~------g~~~~~--~~~yl~a~~~G~pP~ 418 (658)
.+++|||+ .+++|+.++++|||+++|+ ||+|||+|+||+++|++||+++ +.++.. ++|||+|++||+|||
T Consensus 234 ~~~~~f~~-~~~~~~~~~~~fdl~~~g~-El~~G~~r~~d~~~~~~r~~~~~~~~~~~~~~~~~~d~~yl~a~~~G~pPh 311 (342)
T d1e1oa2 234 AEVSPLAR-RNDVNPEITDRFEFFIGGR-EIGNGFSELNDAEDQAERFQEQVNAKAAGDDEAMFYDEDYVTALEYGLPPT 311 (342)
T ss_dssp GGGCTTBC-BCSSCTTBBSEEEEEETTE-EEEEEEEBCCCHHHHHHHHHHHHHHHHTTCTTCCCCCHHHHHHHHHHCCSE
T ss_pred cccChhhc-cccccchhhhhhhcccCCE-eecCCccccCCHHHHHHHHHHHHHHHhcCcchhhhhhHHHHHHhhCCCCCc
Confidence 99999965 5557888999999999995 9999999999999999999753 333333 489999999999999
Q ss_pred cceecchhHHHHHHhcccCcchhhHHH
Q psy8087 419 GGYGLGLERVLCWLLNQYHVRDKYQLI 445 (658)
Q Consensus 419 gG~GiGidRL~m~l~g~~~Irdvi~f~ 445 (658)
||||||+|||+|+|+|.+||||||+||
T Consensus 312 ~G~glG~dRlvm~l~g~~nIrdvi~FP 338 (342)
T d1e1oa2 312 AGLGIGIDRMIMLFTNSHTIRDVILFP 338 (342)
T ss_dssp EEEEEEHHHHHHHHHTCSSGGGTSSSC
T ss_pred cchhHHHHHHHHHHhCCCcHHHhccCC
Confidence 999999999999999999999999996
|
| >d1b8aa2 d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Archaeon Pyrococcus kodakaraensis [TaxId: 311400]
Probab=100.00 E-value=6e-71 Score=587.49 Aligned_cols=299 Identities=29% Similarity=0.520 Sum_probs=263.8
Q ss_pred cceEecCCCceeEEeecCCccc---------CchHHHhhhCCcEEEcCCccccccCCCCccceeeccCCcceeeccCHHH
Q psy8087 138 MKVQLIHPSSYAIVWLGDLKQG---------GYPPEVSLANGIAKVTPPTLVQTQVEGGSTLFSLNFFGEPAYLTQSSQL 208 (658)
Q Consensus 138 ~d~~l~~p~~R~l~lr~~~~~~---------~~iR~fl~~~gF~EV~TPiL~~~~~eG~~~~F~~~~~~~~~~L~~Spql 208 (658)
++++++| ||||||++..++ ++||+||.++||+||+||+|+.+.++|++++|.++++++++||++|||+
T Consensus 14 ~~~r~~~---R~ldlr~~~~~~~l~~Rs~i~~~iR~ff~~~gflEV~TPil~~~~~~~~~~~f~~~~~~~~~yL~~SpE~ 90 (335)
T d1b8aa2 14 LDTRLNN---RFMDLRRPEVMAIFKIRSSVFKAVRDFFHENGFIEIHTPKIIATATEGGTELFPMKYFEEDAFLAESPQL 90 (335)
T ss_dssp HHHHHHT---HHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESCCCSSSSSCCEEEETTEEEEECSCSHH
T ss_pred HHHHhhc---hhheeCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCccCccCCchhhhhccccccccccccccChHH
Confidence 5678888 999998765333 6999999999999999999998899999999999999999999999999
Q ss_pred HHHHhcc-cCCcEEEEeeeeecCCCCCccCcceeeeeeeEeecC-CHHHHHHHHHHHHHHHHHHHhhcccccccccCCCC
Q psy8087 209 YLETCLP-ALGDVYCIAQSYRAENSRTRRHLAEYTHVEAECAFL-TFDDLLDKLEDLICDTVDRVMATHGDLVRQMNPNF 286 (658)
Q Consensus 209 ylk~li~-g~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~a~~-d~~~~m~~~e~li~~i~~~~~~~~~~~~~~~~~~~ 286 (658)
|||++++ |++||||||||||||++++.||++||||+|+|+++. |++++|+++++++..+.+.+.......+..++.++
T Consensus 91 ~lkrll~~g~~~if~i~~~FR~e~~~~~rh~~Ef~~le~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (335)
T d1b8aa2 91 YKEIMMASGLDRVYEIAPIFRAEEHNTTRHLNEAWSIDSEMAFIEDEEEVMSFLERLVAHAINYVREHNAKELDILNFEL 170 (335)
T ss_dssp HHHHGGGTTCCEEEEEEEEECCCSSCCSSCCSEEEEEEEEEESCSSHHHHHHHHHHHHHHHHHHHHHHCHHHHHHTTCCC
T ss_pred HHHHHHhhhhhhHHHhhcccccccccccccchHHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHhhcccchhhhhcccc
Confidence 9999988 799999999999999998889999999999999885 89999999999999999988776544444455444
Q ss_pred CCCCCCcceeeHHHHHHHHHHcCCCCCCCCCcccCCCCCCch----hhhhhcccC-CcEEEEeCCCCCCCCCCccCCCCc
Q psy8087 287 EPPARPFLRMNYADAIEYLRKHEIRKPDNTEYEFGEDIPEMP----ERKMTDQIN-RPIMLCRFPADIKSFYMSKCPENP 361 (658)
Q Consensus 287 ~~~~~pf~rit~~ea~~~l~~~g~~~~~~~~~~~g~~l~~~~----e~~l~~~~~-~p~fi~~~P~~~~pfy~~~~~~~~ 361 (658)
.....||++++|.+|++.+++.|.+.+ ++++++... +.++.+... .|+||+|||.+++|||++.+++++
T Consensus 171 ~~~~~~~~r~~~~e~~~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~fi~~~P~~~~pl~~~~~~~~~ 244 (335)
T d1b8aa2 171 EEPKLPFPRVSYDKALEILGDLGKEIP------WGEDIDTEGERLLGKYMMENENAPLYFLYQYPSEAKPFYIMKYDNKP 244 (335)
T ss_dssp CCCCSSCCEEEHHHHHHHHHHTTCCCC------TTSCCCHHHHHHHHHHHHHHHCCSEEEEESCBGGGSCTTBCEETTEE
T ss_pred ccCCCCcccccHHHHHHHHHhhccccC------cccccccccccceeeeeecccccccceeecChHHhhhccccccCCCc
Confidence 445679999999999999988876643 345555444 344444444 458999999999999888777888
Q ss_pred CceeEEEEEeCCcceeeeceeccCCHHHHHHHHHHcCCCCCCCcchHHHhhcCCCCccceecchhHHHHHHhcccCcchh
Q psy8087 362 ALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGIDPAPYYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRDK 441 (658)
Q Consensus 362 ~~~~~fdL~~~G~~Ei~~G~~r~~d~~~~~~~~~~~g~~~~~~~~yl~a~~~G~pP~gG~GiGidRL~m~l~g~~~Irdv 441 (658)
.++++||||++|+ ||+|||+|+||+++|+++|+++|++++.|+|||+|++||||||||||||||||+|++||.+|||||
T Consensus 245 ~~a~rfel~~~G~-El~nG~~e~~~~~~~~~r~~~~~~~~e~~e~yl~al~~G~Pp~~G~glGiDRLvm~l~~~~~IrdV 323 (335)
T d1b8aa2 245 EICRAFDLEYRGV-EISSGGQREHRHDILVEQIKEKGLNPESFEFYLKAFRYGMPPHGGFGLGAERLIKQMLDLPNIREV 323 (335)
T ss_dssp EEESEEEEEETTE-EEEEEEEBCCCHHHHHHHHHHTTCCGGGGHHHHHTTSBCCCCEEEEEEEHHHHHHHHTTCSCGGGG
T ss_pred HHHHhhccccCce-eeecccchhcCHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCceeeeHHHHHHHHHhCCCcHHhe
Confidence 9999999999997 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHH
Q psy8087 442 YQLIA 446 (658)
Q Consensus 442 i~f~~ 446 (658)
|+||.
T Consensus 324 i~FPr 328 (335)
T d1b8aa2 324 ILFPR 328 (335)
T ss_dssp SSSCC
T ss_pred EcCCC
Confidence 99973
|
| >d1n9wa2 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Thermus thermophilus, AspRS-2 [TaxId: 274]
Probab=100.00 E-value=4e-70 Score=573.62 Aligned_cols=289 Identities=30% Similarity=0.510 Sum_probs=213.1
Q ss_pred ceeEEeecCCccc---------CchHHHhhhCCcEEEcCCccccccCCCCccceeeccCCcceeeccCHHHHHHHhcccC
Q psy8087 147 SYAIVWLGDLKQG---------GYPPEVSLANGIAKVTPPTLVQTQVEGGSTLFSLNFFGEPAYLTQSSQLYLETCLPAL 217 (658)
Q Consensus 147 ~R~l~lr~~~~~~---------~~iR~fl~~~gF~EV~TPiL~~~~~eG~~~~F~~~~~~~~~~L~~Spqlylk~li~g~ 217 (658)
+||||||++..+. ++||+||.++||+||+||+|++++++|++++|+++++|+++||++|||+|||+++.|+
T Consensus 1 yR~ldlr~~~~~~~l~~Rs~i~~~iR~ff~~~gf~Ev~TP~l~~~~~e~~~~~f~~~~~~~~~~L~~Spel~k~ll~~g~ 80 (304)
T d1n9wa2 1 YRYVTLRGEKARAPLKVQAALVRGFRRYLDRQDFTEIFTPKVVRAGAEGGSGLFGVDYFEKRAYLAQSPQLYKQIMVGVF 80 (304)
T ss_dssp CHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCC----------------------------CHHHHHHHHHHH
T ss_pred CCeEEecCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCccCCCCCCCCCceECCcccccchhccccHHHHHHHhhccc
Confidence 4899998665433 6999999999999999999999999999999999999999999999999988776699
Q ss_pred CcEEEEeeeeecCCCCCccCcceeeeeeeEeecC-CHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCCCccee
Q psy8087 218 GDVYCIAQSYRAENSRTRRHLAEYTHVEAECAFL-TFDDLLDKLEDLICDTVDRVMATHGDLVRQMNPNFEPPARPFLRM 296 (658)
Q Consensus 218 ~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~a~~-d~~~~m~~~e~li~~i~~~~~~~~~~~~~~~~~~~~~~~~pf~ri 296 (658)
+|||+||||||||++.++||+|||||||||++|. +++++|+++|+++++++..+.+.+...+..++.++.....+|+++
T Consensus 81 ~~if~i~~~FR~ee~~~~rh~~EF~~le~~~~~~~~~~~~~~l~E~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (304)
T d1n9wa2 81 ERVYEVAPVWRMEEHHTSRHLNEYLSLDVEMGFIADEEDLMRLEEALLAEMLEEALNTAGDEIRLLGATWPSFPQDIPRL 160 (304)
T ss_dssp SEEEEEEEC-------------CCEEEEEEEESCSSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHTTCCCCCCSSSCCEE
T ss_pred ccceeehhhcccccccccccccHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccceecccchhhhh
Confidence 9999999999999988889999999999999997 789999999999999999988776554444554444456789999
Q ss_pred eHHHHHHHHHHcCCCCCCCCCcccCCCCCCchhhhhhcc-----cCCcEEEEeCCCCCCCCCCccCCCCcCceeEEEEEe
Q psy8087 297 NYADAIEYLRKHEIRKPDNTEYEFGEDIPEMPERKMTDQ-----INRPIMLCRFPADIKSFYMSKCPENPALTESVDVLF 371 (658)
Q Consensus 297 t~~ea~~~l~~~g~~~~~~~~~~~g~~l~~~~e~~l~~~-----~~~p~fi~~~P~~~~pfy~~~~~~~~~~~~~fdL~~ 371 (658)
++.||+++++.. .. ..++.++....++.+.+. ...|+||+|||.+++|||+++ .++++++|||||+
T Consensus 161 ~~~e~~~~l~~~-~~------~~~~~~~~~~~~~~l~~~~~~~~~~~~~fi~~~P~~~~p~~~~~--~~~~~a~rfel~~ 231 (304)
T d1n9wa2 161 THAEAKRILKEE-LG------YPVGQDLSEEAERLLGEYAKERWGSDWLFVTRYPRSVRPFYTYP--EEDGTTRSFDLLF 231 (304)
T ss_dssp EHHHHHHHHHHT-SC------CCCCSSCCHHHHHHHHHHHHHHTCCSEEEEECCBGGGSCTTBCB--CTTSBBSEEEEEE
T ss_pred hHHHHHHHHHHH-hC------CCcCCCccHHHHHHHHHHHHhhcCCceEEEeCChhhhCchhhcc--cccceeehhcccc
Confidence 999999987653 22 234556666666554433 357999999999999997544 4556899999999
Q ss_pred CCcceeeeceeccCCHHHHHHHHHHcCCCCCCCcchHHHhhcCCCCccceecchhHHHHHHhcccCcchhhHHH
Q psy8087 372 PNVGEVIGGSMRIWDPEELLAGYKREGIDPAPYYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQYHVRDKYQLI 445 (658)
Q Consensus 372 ~G~~Ei~~G~~r~~d~~~~~~~~~~~g~~~~~~~~yl~a~~~G~pP~gG~GiGidRL~m~l~g~~~Irdvi~f~ 445 (658)
+|+ ||+|||+|+||+++|++||+++|++++.++|||+|++||+|||||||||+|||+|+++|.+|||||++||
T Consensus 232 ~G~-El~nG~~e~~d~~~l~~r~~~~~~~~e~~~~yl~al~~G~PP~~G~glGiDRL~m~l~g~~~Irdv~~FP 304 (304)
T d1n9wa2 232 RGL-EITSGGQRIHRYEELLESLKAKGMDPEAFHGYLEVFKYGMPPHGGFAIGAERLTQKLLGLPNVRYARAFP 304 (304)
T ss_dssp TTE-EEEEEEEBCCCHHHHHHHHHHTTCCGGGGHHHHGGGGBCCCSEEEEEEEHHHHHHHHTTCSSGGGGCSCC
T ss_pred CcE-EEeccccccCCHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCceeehHHHHHHHHHhCCCcHHheecCC
Confidence 997 9999999999999999999999999999999999999999999999999999999999999999999997
|
| >d1c0aa3 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.3e-68 Score=568.04 Aligned_cols=288 Identities=21% Similarity=0.282 Sum_probs=240.4
Q ss_pred cceEecCCCceeEEeecCCccc---------CchHHHhhhCCcEEEcCCccccccCCCCcccee--eccCCcceeeccCH
Q psy8087 138 MKVQLIHPSSYAIVWLGDLKQG---------GYPPEVSLANGIAKVTPPTLVQTQVEGGSTLFS--LNFFGEPAYLTQSS 206 (658)
Q Consensus 138 ~d~~l~~p~~R~l~lr~~~~~~---------~~iR~fl~~~gF~EV~TPiL~~~~~eG~~~~F~--~~~~~~~~~L~~Sp 206 (658)
.|+|++| ||||||++..++ ++||+||.++||+||+||+|++++++|++..|. ..++|..+||+|||
T Consensus 12 ~e~Rl~~---R~LdLr~~~~~~ilr~Rs~i~~~iR~ff~~~gFlEV~TPiL~~~~~~g~~~~~~~~~~~~~~~~~L~~Sp 88 (346)
T d1c0aa3 12 EEARLKY---RYLDLRRPEMAQRLKTRAKITSLVRRFMDDHGFLDIETPMLTKATPEGARDYLVPSRVHKGKFYALPQSP 88 (346)
T ss_dssp HHHHHHT---HHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSSBCCCSSSSCCCEEECSSSTTCEEECCSCS
T ss_pred HHHHhhc---hHHhhCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCccCCCCCccccccccccccCCCccccCCcCH
Confidence 5788888 999999876544 699999999999999999999999988887663 35678999999999
Q ss_pred HHHHHHhcc-cCCcEEEEeeeeecCCCCCccCcceeeeeeeEeecCCHHHHHHHHHHHHHHHHHHHhhcccccccccCCC
Q psy8087 207 QLYLETCLP-ALGDVYCIAQSYRAENSRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGDLVRQMNPN 285 (658)
Q Consensus 207 qlylk~li~-g~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~a~~d~~~~m~~~e~li~~i~~~~~~~~~~~~~~~~~~ 285 (658)
|||||+|++ |++||||||||||||++++ +|+||||||||||+|+|++++|+++|+|+++++..+.+. +
T Consensus 89 el~lk~ll~~g~~~Vf~i~~~FR~E~~~~-~H~~EFtmLE~e~a~~~~~~~m~~~E~li~~l~~~~~~~----------~ 157 (346)
T d1c0aa3 89 QLFKQLLMMSGFDRYYQIVKCFRDEDLRA-DRQPEFTQIDVETSFMTAPQVREVMEALVRHLWLEVKGV----------D 157 (346)
T ss_dssp HHHHHHHHHTTCCEEEEEEEEECCCCCBT-TBCSEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHHSC----------C
T ss_pred HHHHHHHhhcCCCceEEEeeeccccccCc-hhhhHhhhhccccccccHhHhHHHHHHHHHHHHHHHhCC----------c
Confidence 999999887 7999999999999999977 777999999999999999999999999999999988642 2
Q ss_pred CCCCCCCcceeeHHHHHHHHHHcCCCCCCCCC-----cccCCCCCCchhhhhhcccCCcEEEEeCCCCCCCCCCccCCCC
Q psy8087 286 FEPPARPFLRMNYADAIEYLRKHEIRKPDNTE-----YEFGEDIPEMPERKMTDQINRPIMLCRFPADIKSFYMSKCPEN 360 (658)
Q Consensus 286 ~~~~~~pf~rit~~ea~~~l~~~g~~~~~~~~-----~~~g~~l~~~~e~~l~~~~~~p~fi~~~P~~~~pfy~~~~~~~ 360 (658)
..+|++++|.|++..+ +.+.++... ..|+.++ ..++...+..+..+++++++|...+|+++.. ..+
T Consensus 158 ----~~~~~~~~~~e~~~~~---~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~p~~~~~~~~~~-~~~ 228 (346)
T d1c0aa3 158 ----LGDFPVMTFAEAERRY---GSDKPDLRDESKWAPLWVIDF-PMFEDDGEGGLTAMHHPFTSPKDMTAAELKA-APE 228 (346)
T ss_dssp ----CCSCCEEEHHHHHHHH---SCSSCCTTCSSCCCEEEEECC-BSEEECSSSCEEESSCTTBCBSSCCHHHHHH-SCT
T ss_pred ----CCccceeeHHHHHHHh---cccccchhhHhhhhhhccccc-cccchhcccceeeeEeeccccchhhHHHhcc-CCc
Confidence 2589999999998764 444433211 1111121 1122223333445677788999999986544 456
Q ss_pred cCceeEEEEEeCCcceeeeceeccCCHHHHHHHHHHcCCCC----CCCcchHHHhhcCCCCccceecchhHHHHHHhccc
Q psy8087 361 PALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGIDP----APYYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQY 436 (658)
Q Consensus 361 ~~~~~~fdL~~~G~~Ei~~G~~r~~d~~~~~~~~~~~g~~~----~~~~~yl~a~~~G~pP~gG~GiGidRL~m~l~g~~ 436 (658)
+.++++|||+++|+ ||+|||+|+||+++|++||+++|+++ +.|+|||+|++||||||||||||+|||+|++||.+
T Consensus 229 ~~~a~~fdl~~~G~-El~nG~~rl~d~~~~~~r~~~~~~~~~~~~e~~~~ylda~~~G~PP~~G~glGldRL~m~l~g~~ 307 (346)
T d1c0aa3 229 NAVANAYDMVINGY-EVGGGSVRIHNGDMQQTVFGILGINEEEQREKFGFLLDALKYGTPPHAGLAFGLDRLTMLLTGTD 307 (346)
T ss_dssp TCBBSEEEEEETTE-EEEEEEEBCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTTCCCEEEEEEEHHHHHHHHHTCS
T ss_pred cccccccccCcCCE-EEechhhhhchHHHHHHHHHHhCccccchHHHHHHHHHHHHCCCCCceeEeEHHHHHHHHHcCCC
Confidence 78999999999996 99999999999999999999999876 45889999999999999999999999999999999
Q ss_pred CcchhhHHHHHhh
Q psy8087 437 HVRDKYQLIAKAQ 449 (658)
Q Consensus 437 ~Irdvi~f~~k~~ 449 (658)
|||||++||..++
T Consensus 308 ~Irdvi~FPRt~~ 320 (346)
T d1c0aa3 308 NIRDVIAFPKTTA 320 (346)
T ss_dssp CGGGGSSSCCCTT
T ss_pred cHHheecCCCCCC
Confidence 9999999997654
|
| >d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Thermus thermophilus, AspRS-1 [TaxId: 274]
Probab=100.00 E-value=1.9e-67 Score=563.98 Aligned_cols=288 Identities=23% Similarity=0.342 Sum_probs=240.7
Q ss_pred cceEecCCCceeEEeecCCccc---------CchHHHhhhCCcEEEcCCccccccCCCCccce--eeccCCcceeeccCH
Q psy8087 138 MKVQLIHPSSYAIVWLGDLKQG---------GYPPEVSLANGIAKVTPPTLVQTQVEGGSTLF--SLNFFGEPAYLTQSS 206 (658)
Q Consensus 138 ~d~~l~~p~~R~l~lr~~~~~~---------~~iR~fl~~~gF~EV~TPiL~~~~~eG~~~~F--~~~~~~~~~~L~~Sp 206 (658)
.|+|++| ||||||++..++ ++||+||.++||+||+||+|++++++|++..| ..++++..+||++||
T Consensus 20 ~~~Rl~~---R~LdLR~~~~~~ilr~Rs~i~~~iR~ff~~~gfiEV~TP~L~~~~~eg~~~~~~~~~~~~~~~~yL~~Sp 96 (356)
T d1l0wa3 20 EELRLKY---RYLDLRRRRMQENLRLRHRVIKAIWDFLDREGFVQVETPFLTKSTPEGARDFLVPYRHEPGLFYALPQSP 96 (356)
T ss_dssp HHHHHHT---HHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSSBCCCSSSSCCCEEECTTSTTEEEECCSCS
T ss_pred HHHHhhc---hhhhhCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCccccCCCcccccchhhhhcccccccCCCcCh
Confidence 5789999 999999886654 69999999999999999999999999988876 347899999999999
Q ss_pred HHHHHHhcc-cCCcEEEEeeeeecCCCCCccCcceeeeeeeEeecCCHHHHHHHHHHHHHHHHHHHhhcccccccccCCC
Q psy8087 207 QLYLETCLP-ALGDVYCIAQSYRAENSRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGDLVRQMNPN 285 (658)
Q Consensus 207 qlylk~li~-g~~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~a~~d~~~~m~~~e~li~~i~~~~~~~~~~~~~~~~~~ 285 (658)
|||||++++ |++|||+||||||||++++ +|+|||||||||++|+|++++|+++|+|++++++.+.+..
T Consensus 97 el~lk~ll~~g~~~Vf~i~~~FRaE~~~t-~H~~EFtmLE~e~~~~~~~~~m~~~E~li~~v~~~~~~~~---------- 165 (356)
T d1l0wa3 97 QLFKQMLMVAGLDRYFQIARCFRDEDLRA-DRQPDFTQLDLEMSFVEVEDVLELNERLMAHVFREALGVE---------- 165 (356)
T ss_dssp HHHHHHHHHTTCSEEEEEEEEECCCCCCS-SCCSEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHTCCC----------
T ss_pred hHHHHHhhhcccCcEEEEeccccccccCC-cchhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhCCC----------
Confidence 999999887 7999999999999999987 8999999999999999999999999999999998876432
Q ss_pred CCCCCCCcceeeHHHHHHHHHHcCCCCCCC----CCcccCCCCCC--chhhhhhcccCCcEEEEeCCCCCCCCCCccCCC
Q psy8087 286 FEPPARPFLRMNYADAIEYLRKHEIRKPDN----TEYEFGEDIPE--MPERKMTDQINRPIMLCRFPADIKSFYMSKCPE 359 (658)
Q Consensus 286 ~~~~~~pf~rit~~ea~~~l~~~g~~~~~~----~~~~~g~~l~~--~~e~~l~~~~~~p~fi~~~P~~~~pfy~~~~~~ 359 (658)
.+.||++++|.+|+..+ +.+.++. ....|+.++.. ..+......+..|+|+++||....++ .+ +.
T Consensus 166 ---~~~~f~r~~~~~a~~~~---~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~f~~~~p~~~~~~-~~--~~ 236 (356)
T d1l0wa3 166 ---LPLPFPRLSYEEAMERY---GSDKPDLRREGFRFLWVVDFPLLEWDEEEEAWTYMHHPFTSPHPEDLPLL-EK--DP 236 (356)
T ss_dssp ---CCSSCCEEEHHHHHHHH---SSSSCCCSCCSCCEEEEECCBSBCCCTTTSCCCBSSCTTBCBCSTTTTHH-HH--CG
T ss_pred ---CCCCCCcchHHhhHHHH---hcCcHhHHHHhhhhhhccccccccccchhcceeeeeCCcccCChhhhchh-hc--CC
Confidence 24699999999999875 3332221 12233333321 11111111245688999999887654 22 24
Q ss_pred CcCceeEEEEEeCCcceeeeceeccCCHHHHHHHHHHcCCCCCC----CcchHHHhhcCCCCccceecchhHHHHHHhcc
Q psy8087 360 NPALTESVDVLFPNVGEVIGGSMRIWDPEELLAGYKREGIDPAP----YYWYTDQRKYGSTPHGGYGLGLERVLCWLLNQ 435 (658)
Q Consensus 360 ~~~~~~~fdL~~~G~~Ei~~G~~r~~d~~~~~~~~~~~g~~~~~----~~~yl~a~~~G~pP~gG~GiGidRL~m~l~g~ 435 (658)
++.++++||||++|+ ||||||+|+||+++|++||+++|++++. |+|||+|++||||||||||||+|||+|+++|.
T Consensus 237 ~~~~a~~FdL~~~G~-ElanG~~r~~d~~~~~~r~~~~~~~~~~~~~~~~~yl~a~~~G~PP~~G~glGldRLlm~l~g~ 315 (356)
T d1l0wa3 237 GRVRALAYDLVLNGV-EVGGGSIRIHDPRLQARVFRLLGIGEEEQREKFGFFLEALEYGAPPHGGIAWGLDRLLALMTGS 315 (356)
T ss_dssp GGCBBSEEEEEETTE-EEEEEEEBCCCHHHHHHHHHHHTCCTTTHHHHTHHHHHHTTBTCCCEEEEEEEHHHHHHHHHTC
T ss_pred CcceeeeeecccCCE-EeeccEEEeCcHHHHHHHHHHHcCCchhhHHHHHHHHHHhhCCCCCcceEEEcHHHHHHHHcCC
Confidence 567899999999997 9999999999999999999999987753 89999999999999999999999999999999
Q ss_pred cCcchhhHHHHHhh
Q psy8087 436 YHVRDKYQLIAKAQ 449 (658)
Q Consensus 436 ~~Irdvi~f~~k~~ 449 (658)
+|||||++||..+.
T Consensus 316 ~~Irdvi~FPR~~~ 329 (356)
T d1l0wa3 316 PSIREVIAFPKNKE 329 (356)
T ss_dssp SSGGGGSSSCCCTT
T ss_pred CcHHheecCCCCCC
Confidence 99999999986543
|
| >d1nnha_ d.104.1.1 (A:) Hypothetical protein PF1951 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Hypothetical protein PF1951 species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=4.1e-66 Score=538.55 Aligned_cols=267 Identities=18% Similarity=0.347 Sum_probs=225.0
Q ss_pred EEeecCCccc---------CchHHHhhhCCcEEEcCCcccccc----CCC---CccceeeccCCcceeeccCHHHHHHHh
Q psy8087 150 IVWLGDLKQG---------GYPPEVSLANGIAKVTPPTLVQTQ----VEG---GSTLFSLNFFGEPAYLTQSSQLYLETC 213 (658)
Q Consensus 150 l~lr~~~~~~---------~~iR~fl~~~gF~EV~TPiL~~~~----~eG---~~~~F~~~~~~~~~~L~~Spqlylk~l 213 (658)
||||++..++ +++|+||.++||+||+||+|++.+ +++ +..+|+++|||+++||++|||||||++
T Consensus 3 l~l~~~~~~~il~~Rs~i~~~iR~ff~~~gf~EV~tPil~~~~~~~~~~~~~~~~~~~~~~~~~~~~yL~~SPel~lk~l 82 (293)
T d1nnha_ 3 VEIISREISPTLDIQTKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAGEGMEPAEVEIYGVKMRLTHSMILHKQLA 82 (293)
T ss_dssp HHHHTSCCHHHHHHHHHHHHHHHHHHHHTTCEEECCCCEESCCCCCCSCTTCCCCCCCEEEETTEEEEECSCSHHHHHHH
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEcCCcccccCCCCCCccccCccccccccCCCceeecccChhhhHHHH
Confidence 4566555443 699999999999999999996432 222 245788999999999999999999988
Q ss_pred cc-cCCcEEEEeeeeecCCC--CCccCcceeeeeeeEeecCCHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCC
Q psy8087 214 LP-ALGDVYCIAQSYRAENS--RTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGDLVRQMNPNFEPPA 290 (658)
Q Consensus 214 i~-g~~rvfeI~~~FR~E~~--~~~rHl~EFt~lE~e~a~~d~~~~m~~~e~li~~i~~~~~~~~~~~~~~~~~~~~~~~ 290 (658)
++ |++||||||||||||+. +++||||||||||||++|+|++|+|+++|+|++++++.+.+... .++. ..
T Consensus 83 la~g~~~Vf~I~~~FR~E~~~s~t~RH~~EFtmLE~e~~~~d~~d~m~~~e~li~~~~~~~~~~~~-------~~~~-~~ 154 (293)
T d1nnha_ 83 IAMGLKKIFVLSPNIRLESRQKDDGRHAYEFTQLDFEVERAKMEDIMRLIERLVYGLFRKAEEWTG-------REFP-KT 154 (293)
T ss_dssp HHTTCCEEEEEEEEECCCCGGGCSSSCCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHHHHHS-------SCCC-CC
T ss_pred HHhccccceeechhhhcCcccCCCCccchhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhC-------cccc-cC
Confidence 77 89999999999999965 45689999999999999999999999999999999998865432 1221 24
Q ss_pred CCcceeeHHHHHHHHHHcCCCCCCCCCcccCCCCCCchhhhhhcccCCcEEEEeCCCCCCCCCCccCCCCcCceeEEEEE
Q psy8087 291 RPFLRMNYADAIEYLRKHEIRKPDNTEYEFGEDIPEMPERKMTDQINRPIMLCRFPADIKSFYMSKCPENPALTESVDVL 370 (658)
Q Consensus 291 ~pf~rit~~ea~~~l~~~g~~~~~~~~~~~g~~l~~~~e~~l~~~~~~p~fi~~~P~~~~pfy~~~~~~~~~~~~~fdL~ 370 (658)
.||++++|.||++. .|.+ ...++.+..|+|++|||. +||++.. ++...+.+|+++
T Consensus 155 ~~~~~~~~~eal~~---~g~d------------------~~~~~~~~~p~~~~~~p~---~f~~~~~-~~~~~~~~~~l~ 209 (293)
T d1nnha_ 155 KRFEVFEYSEVLEE---FGSD------------------EKASQEMEEPFWIINIPR---EFYDREV-DGFWRNYDLILP 209 (293)
T ss_dssp SSCEEEEHHHHHHH---TSSH------------------HHHHHHCSSCEEEECCCC---CTTBCEE-TTEECEEEEEET
T ss_pred CccccccHHhhhcc---cCcc------------------cccccccccceeccccch---hhccccc-ccccccceeEec
Confidence 68999999999975 4432 223345678999999994 6887654 345567888888
Q ss_pred eCCcceeeeceeccCCHHHHHHHHHHcCCCCCCCcchHHHhhcC-CCCccceecchhHHHHHHhcccCcchhhHHHHHhh
Q psy8087 371 FPNVGEVIGGSMRIWDPEELLAGYKREGIDPAPYYWYTDQRKYG-STPHGGYGLGLERVLCWLLNQYHVRDKYQLIAKAQ 449 (658)
Q Consensus 371 ~~G~~Ei~~G~~r~~d~~~~~~~~~~~g~~~~~~~~yl~a~~~G-~pP~gG~GiGidRL~m~l~g~~~Irdvi~f~~k~~ 449 (658)
++|. ||+|||+|+|||++|++||++.|++++.++|||+|++|| ||||||||||+|||+|+++|.+|||||++||..+.
T Consensus 210 ~~g~-Elang~~el~d~~~~~~r~~~~gl~~e~~~~yl~a~~~G~mPP~~G~glGiDRL~m~l~g~~~Irdv~~FPR~~g 288 (293)
T d1nnha_ 210 YGYG-EVASGGEREWEYEKIVAKIRKAGLNEDSFRPYLEIAKAGKLKPSAGAGIGVERLVRFIVGAKHIAEVQPFPRIPG 288 (293)
T ss_dssp TTTE-EEEEEEEBCCCHHHHHHHHHHTTCCGGGGHHHHHHHHTTCCCCEEEEEEEHHHHHHHHHTCSSGGGGCSSCCCTT
T ss_pred ccCc-ccccccccccCHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCCeEeehHHHHHHHHhCCCcHHheecCCCCCC
Confidence 8995 999999999999999999999999999999999999999 99999999999999999999999999999987654
Q ss_pred h
Q psy8087 450 L 450 (658)
Q Consensus 450 l 450 (658)
+
T Consensus 289 ~ 289 (293)
T d1nnha_ 289 I 289 (293)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >d1l0wa1 b.40.4.1 (A:1-104) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Aspartyl-tRNA synthetase (AspRS) species: Thermus thermophilus, AspRS-1 [TaxId: 274]
Probab=99.77 E-value=2.7e-18 Score=149.32 Aligned_cols=90 Identities=32% Similarity=0.442 Sum_probs=81.9
Q ss_pred CccCCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCC--CCCCCce
Q psy8087 508 EKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEG--KSAPGGH 585 (658)
Q Consensus 508 ~~~~g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~--~~~~g~~ 585 (658)
..+.|++|+|+|||+++|.+| +++|++|||++|.+||+++.+...++.+..|+.||+|.|+|+|.++++. +.++|++
T Consensus 12 ~~~~g~~V~l~GWV~~~R~~g-~i~Fi~LRD~~G~iQ~v~~~~~~~~~~~~~l~~Es~I~V~G~V~~r~~~n~~~~tG~i 90 (104)
T d1l0wa1 12 ETHVGEEVVLEGWVNRRRDLG-GLIFLDLRDREGLVQLVAHPASPAYATAERVRPEWVVRAKGLVRLRPEPNPRLATGRV 90 (104)
T ss_dssp GGGTTCEEEEEEEEEEEEECS-SCEEEEEEETTEEEEEEECTTSTTHHHHTTCCTTCEEEEEEEEEECSSCCTTSTTTTE
T ss_pred hHHCCCEEEEEEEEEehhcCC-CeEEEEEECCCCceEEecccchhHHHHHhhcCcccEEEEEEEEeeCCccCCCCCCCCE
Confidence 567899999999999999998 7999999999999999998876667788899999999999999988753 4568999
Q ss_pred EEEEEEEEEEecC
Q psy8087 586 ELKVDYWEVVGLA 598 (658)
Q Consensus 586 El~~~~i~vls~~ 598 (658)
||.+++++|||+|
T Consensus 91 Ei~v~~i~iL~~a 103 (104)
T d1l0wa1 91 EVELSALEVLAEA 103 (104)
T ss_dssp EEEEEEEEEEECC
T ss_pred EEEEeEEEEEEcC
Confidence 9999999999987
|
| >d1e1oa1 b.40.4.1 (A:11-153) Lysyl-tRNA synthetase (LysRS) {Escherichia coli, gene lysU [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Lysyl-tRNA synthetase (LysRS) species: Escherichia coli, gene lysU [TaxId: 562]
Probab=99.76 E-value=2.6e-18 Score=158.01 Aligned_cols=124 Identities=17% Similarity=0.103 Sum_probs=96.7
Q ss_pred hhhHHHHHHHHhHHHHHhcccCCCCCCCcc---------ceeecccC-CccCCcEEEEEEEEEeeecCCCceEEEEEEeC
Q psy8087 470 KEEEDAEKREKNLEEAKKIVLKEDPSLPPA---------VRIKIKDG-EKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDG 539 (658)
Q Consensus 470 k~~~~~~~~~~~l~~~~~~~~~~~~~~~~~---------~~~~i~~~-~~~~g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~ 539 (658)
..+++.+.|.++++++++.++ ++|..... .|...... ....+..|+|+|||.++|.+| |++|++|+|.
T Consensus 3 ~~~e~~~~R~~Kl~~Lr~~G~-pYP~~~~~t~~~~ei~~~~~~~~~~~~~~~~~~V~vaGRI~~~R~~G-k~~F~~i~D~ 80 (143)
T d1e1oa1 3 DFNDELRNRREKLAALRQQGV-AFPNDFRRDHTSDQLHEEFDAKDNQELESLNIEVSVAGRMMTRRIMG-KASFVTLQDV 80 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHHSC-SSCCCCCCSCCHHHHHHHHTTCCHHHHHHHCCEEEEEEEEEEEEEET-TEEEEEEEET
T ss_pred CccHHHHHHHHHHHHHHHhCC-CCCCCCcCCccHHHHHHHHhcccchhhhccCceEEEEEEEEEEcccC-CeeEEEEEeC
Confidence 345677888899999999887 77642221 11111110 112367899999999999999 7999999999
Q ss_pred CEEEEEEEcCCc---cch-HHhccCCCCcEEEEEEEEEecCCCCCCCCceEEEEEEEEEEecCCC
Q psy8087 540 SGFIQCVLADIL---CQT-EHALLLSTESSVQFRGRIEKVPEGKSAPGGHELKVDYWEVVGLAPA 600 (658)
Q Consensus 540 ~~~iQvv~~~~~---~~~-~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~El~~~~i~vls~~~~ 600 (658)
+|.||++++++. ..+ .+.+.|++||+|+|+|.+.+|+ +||++|.+++|++|++|+.
T Consensus 81 ~g~iQi~~~~~~~~~~~~~~~~k~ld~GDiIgv~G~~~~Tk-----tGElsi~~~~~~lLsK~l~ 140 (143)
T d1e1oa1 81 GGRIQLYVARDSLPEGVYNDQFKKWDLGDIIGARGTLFKTQ-----TGELSIHCTELRLLTKALR 140 (143)
T ss_dssp TEEEEEEEETTTSSTTHHHHTGGGCCTTCEEEEEEEEEECT-----TCCEEEEEEEEEEEECCSS
T ss_pred CceEEEEEccccchhhhHHHHHhcCCcccEEEeecccEECC-----CCcEEEEeeEEEEeccccC
Confidence 999999998753 234 3457899999999999998766 8999999999999999975
|
| >d1n9wa1 b.40.4.1 (A:1-93) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Aspartyl-tRNA synthetase (AspRS) species: Thermus thermophilus, AspRS-2 [TaxId: 274]
Probab=99.76 E-value=5.1e-18 Score=144.98 Aligned_cols=88 Identities=31% Similarity=0.480 Sum_probs=78.5
Q ss_pred eecccCCccCCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCCCCC
Q psy8087 502 IKIKDGEKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEGKSA 581 (658)
Q Consensus 502 ~~i~~~~~~~g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~~ 581 (658)
+.|+++..+.|++|+|+|||+++|.+| |++|++|||++|.+||++++. ..++.||+|.|+|++..++ .+
T Consensus 3 ~~I~dl~~~~g~~V~v~GwV~~~R~~g-k~~Fi~LrD~sg~iQ~v~~~~-------~~~~~e~~v~v~G~v~~~~---~~ 71 (93)
T d1n9wa1 3 VLVRDLKAHVGQEVELLGFLHWRRDLG-RIQFLLLRDRSGVVQVVTGGL-------KLPLPESALRVRGLVVENA---KA 71 (93)
T ss_dssp CCGGGGGGCTTSEEEEEEEEEEEEECS-SEEEEEEEETTEEEEEEEESC-------CCCCTTCEEEEEEEEEECT---TS
T ss_pred EEhHHhhhcCCCEEEEEEEEEeEEeCC-CcEEEEEEcCCccceEEeccc-------cccccceEEEEEEEEEECC---CC
Confidence 457777788999999999999999998 799999999999999999864 2578999999999999876 45
Q ss_pred CCceEEEEEEEEEEecCCC
Q psy8087 582 PGGHELKVDYWEVVGLAPA 600 (658)
Q Consensus 582 ~g~~El~~~~i~vls~~~~ 600 (658)
+|++||+++++++|++|..
T Consensus 72 ~~~~Ei~v~~i~il~~a~~ 90 (93)
T d1n9wa1 72 PGGLEVQAKEVEVLSPALE 90 (93)
T ss_dssp TTSEEEEEEEEEEEECCCS
T ss_pred CCCEEEEEeEEEEEecCCC
Confidence 7999999999999999863
|
| >d1c0aa1 b.40.4.1 (A:1-106) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Aspartyl-tRNA synthetase (AspRS) species: Escherichia coli [TaxId: 562]
Probab=99.74 E-value=1e-17 Score=146.32 Aligned_cols=90 Identities=27% Similarity=0.403 Sum_probs=79.5
Q ss_pred CccCCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCccc-hHHhccCCCCcEEEEEEEEEecCCC----CCCC
Q psy8087 508 EKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILCQ-TEHALLLSTESSVQFRGRIEKVPEG----KSAP 582 (658)
Q Consensus 508 ~~~~g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~~~-~~~~~~L~~gs~V~V~G~v~~~~~~----~~~~ 582 (658)
..+.|++|+|+|||+++|.+| +++|++|||++|.+||++.++... ++.+..|+.||+|.|+|+|..++.+ +.++
T Consensus 11 ~~~~g~~V~v~GWv~~~R~~g-~i~Fi~LRD~~G~~Q~v~~~~~~~~~~~~~~l~~Es~v~V~G~V~~r~~~~~n~~~~t 89 (106)
T d1c0aa1 11 LSHVGQQVTLCGWVNRRRDLG-SLIFIDMRDREGIVQVFFDPDRADALKLASELRNEFCIQVTGTVRARDEKNINRDMAT 89 (106)
T ss_dssp GGGTTCEEEEEEEEEEEEECS-SCEEEEEEETTEEEEEEECGGGHHHHHHHTTCCTTCEEEEEEEEEECCTTTCCTTSTT
T ss_pred hHHCCCEEEEEEEEEEeeeCC-CcEEEEEEcCCeEEeEEecccchhHHHHHHhhCccceEEEEeEEeccCccccCCCCCC
Confidence 467899999999999999998 799999999999999999865433 4667889999999999999988754 3567
Q ss_pred CceEEEEEEEEEEecC
Q psy8087 583 GGHELKVDYWEVVGLA 598 (658)
Q Consensus 583 g~~El~~~~i~vls~~ 598 (658)
|++||.+++++|||+|
T Consensus 90 g~iEi~v~~i~vl~~a 105 (106)
T d1c0aa1 90 GEIEVLASSLTIINRA 105 (106)
T ss_dssp TTEEEEEEEEEEEECC
T ss_pred CcEEEEEeEEEEEeCC
Confidence 9999999999999987
|
| >d1b8aa1 b.40.4.1 (A:1-103) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Aspartyl-tRNA synthetase (AspRS) species: Archaeon Pyrococcus kodakaraensis [TaxId: 311400]
Probab=99.73 E-value=1.7e-17 Score=144.24 Aligned_cols=88 Identities=25% Similarity=0.397 Sum_probs=77.6
Q ss_pred CccCCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCcc---chHHhccCCCCcEEEEEEEEEecCCCCCCCCc
Q psy8087 508 EKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILC---QTEHALLLSTESSVQFRGRIEKVPEGKSAPGG 584 (658)
Q Consensus 508 ~~~~g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~~---~~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~ 584 (658)
+.+.|++|+|+|||+++|.+| +++|++|||++|.+||+++++.. .++.+..|+.||+|.|+|++..+|. ++++
T Consensus 12 ~~~~G~~V~v~Gwv~~~R~~g-~i~Fi~LrD~sg~iQ~v~~~~~~~~~~~~~~~~l~~es~v~V~G~v~~~~~---~~~~ 87 (103)
T d1b8aa1 12 EELNGQKVKVAGWVWEVKDLG-GIKFLWIRDRDGIVQITAPKKKVDPELFKLIPKLRSEDVVAVEGVVNFTPK---AKLG 87 (103)
T ss_dssp GGGTTCEEEEEEEEEEEEEET-TEEEEEEEETTEEEEEEEETTTSCHHHHHHGGGCCTTCEEEEEEEEEECTT---STTS
T ss_pred hhHCCCEEEEEEEEehhccCC-CcEEEEEEcCCEeeeEEEeccccchhhhhHHhhCCcceEEEEEEEEEECCC---CCcc
Confidence 456899999999999999998 79999999999999999987542 2577889999999999999998773 3677
Q ss_pred eEEEEEEEEEEecCC
Q psy8087 585 HELKVDYWEVVGLAP 599 (658)
Q Consensus 585 ~El~~~~i~vls~~~ 599 (658)
+||.+++++|||+|.
T Consensus 88 iEi~v~~i~ils~a~ 102 (103)
T d1b8aa1 88 FEILPEKIVVLNRAE 102 (103)
T ss_dssp EEEEEEEEEEEECBC
T ss_pred EEEEeeEEEEEEecC
Confidence 999999999999973
|
| >d1eova1 b.40.4.1 (A:71-204) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Aspartyl-tRNA synthetase (AspRS) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.72 E-value=3.1e-17 Score=149.49 Aligned_cols=102 Identities=30% Similarity=0.336 Sum_probs=85.2
Q ss_pred cceeecccC--CccCCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCcc-----c-hHHhccCCCCcEEEEEE
Q psy8087 499 AVRIKIKDG--EKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILC-----Q-TEHALLLSTESSVQFRG 570 (658)
Q Consensus 499 ~~~~~i~~~--~~~~g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~~-----~-~~~~~~L~~gs~V~V~G 570 (658)
..++++.++ ..+.|++|+|+|||+++|.+|+|++|++|||+++.+||++..+.. . ++++..|++||+|.|+|
T Consensus 21 ~~r~~i~dl~~~~~~g~~V~v~GwV~~~R~~G~kl~F~~LrD~sg~iQ~~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G 100 (134)
T d1eova1 21 QKRVKFVDLDEAKDSDKEVLFRARVHNTRQQGATLAFLTLRQQASLIQGLVKANKEGTISKNMVKWAGSLNLESIVLVRG 100 (134)
T ss_dssp CCCCCGGGCCTTTTTTCEEEEEEEEEEEEECSSSEEEEEEEETTEEEEEEEECCSSSSSCHHHHHHHTTCCTTCEEEEEE
T ss_pred cEEEEeccccchhcCCCEEEEEEEEEEEEeCCCcEEEEEEEcCCCcEEEEEEeccccchhHHHHHHHhcCCCCCEEEEEE
Confidence 445566554 457799999999999999999889999999999999999986422 1 36778999999999999
Q ss_pred EEEecCCC--CCCCCceEEEEEEEEEEecCCC
Q psy8087 571 RIEKVPEG--KSAPGGHELKVDYWEVVGLAPA 600 (658)
Q Consensus 571 ~v~~~~~~--~~~~g~~El~~~~i~vls~~~~ 600 (658)
+|.+++.+ ...+|++||+++++++||+|+.
T Consensus 101 ~v~~~~~~~~~~~~~~~Ei~v~~i~vls~a~~ 132 (134)
T d1eova1 101 IVKKVDEPIKSATVQNLEIHITKIYTISETPE 132 (134)
T ss_dssp EEEECSSCCTTSSEEEEEEEEEEEEEEECCCS
T ss_pred EEEeCCccCCCCCCCcEEEEEEEEEEEeCCCC
Confidence 99998754 2346899999999999999863
|
| >d1b8aa1 b.40.4.1 (A:1-103) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Aspartyl-tRNA synthetase (AspRS) species: Archaeon Pyrococcus kodakaraensis [TaxId: 311400]
Probab=99.44 E-value=2.5e-13 Score=117.52 Aligned_cols=86 Identities=16% Similarity=0.132 Sum_probs=70.2
Q ss_pred CccccccccccCCCccCCcEEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccch--hhh-hhcCCCccEEEEEEE
Q psy8087 53 SPCEVGYITCEGPAGYIITNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILCQ--TEH-ALLLSTESSVQFRGR 129 (658)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~~--~~~-~~~l~~es~V~v~G~ 129 (658)
+++.++++... ..|++|+|+|||+++|.+|| ++|++|||++|.||||++++... .|. ...++.||+|.|+|.
T Consensus 3 RTh~~~el~~~----~~G~~V~v~Gwv~~~R~~g~-i~Fi~LrD~sg~iQ~v~~~~~~~~~~~~~~~~l~~es~v~V~G~ 77 (103)
T d1b8aa1 3 RTHYSSEITEE----LNGQKVKVAGWVWEVKDLGG-IKFLWIRDRDGIVQITAPKKKVDPELFKLIPKLRSEDVVAVEGV 77 (103)
T ss_dssp CSCCGGGCCGG----GTTCEEEEEEEEEEEEEETT-EEEEEEEETTEEEEEEEETTTSCHHHHHHGGGCCTTCEEEEEEE
T ss_pred cccChhhCChh----HCCCEEEEEEEEehhccCCC-cEEEEEEcCCEeeeEEEeccccchhhhhHHhhCCcceEEEEEEE
Confidence 45677888554 68999999999999999885 99999999999999999877542 233 357999999999999
Q ss_pred eEeCCCCc--cceEec
Q psy8087 130 IEKVPEEN--MKVQLI 143 (658)
Q Consensus 130 l~~~p~~~--~d~~l~ 143 (658)
+..+|.+. +|+.++
T Consensus 78 v~~~~~~~~~iEi~v~ 93 (103)
T d1b8aa1 78 VNFTPKAKLGFEILPE 93 (103)
T ss_dssp EEECTTSTTSEEEEEE
T ss_pred EEECCCCCccEEEEee
Confidence 99988665 556554
|
| >d1c0aa1 b.40.4.1 (A:1-106) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Aspartyl-tRNA synthetase (AspRS) species: Escherichia coli [TaxId: 562]
Probab=99.42 E-value=5.5e-13 Score=115.92 Aligned_cols=78 Identities=18% Similarity=0.229 Sum_probs=64.7
Q ss_pred ccccccccccCCCccCCcEEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccchhhh-hhcCCCccEEEEEEEeEe
Q psy8087 54 PCEVGYITCEGPAGYIITNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILCQTEH-ALLLSTESSVQFRGRIEK 132 (658)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~~~~~-~~~l~~es~V~v~G~l~~ 132 (658)
++.++++... .+|++|+|+|||+++|.+| +++|++|||++|.+||++.++....+. ...|+.||+|.|+|+|..
T Consensus 3 th~cgeL~~~----~~g~~V~v~GWv~~~R~~g-~i~Fi~LRD~~G~~Q~v~~~~~~~~~~~~~~l~~Es~v~V~G~V~~ 77 (106)
T d1c0aa1 3 TEYCGQLRLS----HVGQQVTLCGWVNRRRDLG-SLIFIDMRDREGIVQVFFDPDRADALKLASELRNEFCIQVTGTVRA 77 (106)
T ss_dssp SSCGGGCCGG----GTTCEEEEEEEEEEEEECS-SCEEEEEEETTEEEEEEECGGGHHHHHHHTTCCTTCEEEEEEEEEE
T ss_pred ceEcccCChH----HCCCEEEEEEEEEEeeeCC-CcEEEEEEcCCeEEeEEecccchhHHHHHHhhCccceEEEEeEEec
Confidence 5567888543 7899999999999998877 599999999999999999876544332 357999999999999998
Q ss_pred CCCC
Q psy8087 133 VPEE 136 (658)
Q Consensus 133 ~p~~ 136 (658)
.|.+
T Consensus 78 r~~~ 81 (106)
T d1c0aa1 78 RDEK 81 (106)
T ss_dssp CCTT
T ss_pred cCcc
Confidence 7754
|
| >d1l0wa1 b.40.4.1 (A:1-104) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Aspartyl-tRNA synthetase (AspRS) species: Thermus thermophilus, AspRS-1 [TaxId: 274]
Probab=99.39 E-value=7.6e-13 Score=114.45 Aligned_cols=77 Identities=22% Similarity=0.248 Sum_probs=63.9
Q ss_pred CccccccccccCCCccCCcEEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccchhhh-hhcCCCccEEEEEEEeE
Q psy8087 53 SPCEVGYITCEGPAGYIITNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILCQTEH-ALLLSTESSVQFRGRIE 131 (658)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~~~~~-~~~l~~es~V~v~G~l~ 131 (658)
+++.++++... .+|++|+|+|||+++|.+| +++|++|||++|.+|++++.+. +.|+ ...++.||+|.|+|.|.
T Consensus 3 RTh~~geL~~~----~~g~~V~l~GWV~~~R~~g-~i~Fi~LRD~~G~iQ~v~~~~~-~~~~~~~~l~~Es~I~V~G~V~ 76 (104)
T d1l0wa1 3 RTHYAGSLRET----HVGEEVVLEGWVNRRRDLG-GLIFLDLRDREGLVQLVAHPAS-PAYATAERVRPEWVVRAKGLVR 76 (104)
T ss_dssp CSSCGGGCCGG----GTTCEEEEEEEEEEEEECS-SCEEEEEEETTEEEEEEECTTS-TTHHHHTTCCTTCEEEEEEEEE
T ss_pred cccccccCChH----HCCCEEEEEEEEEehhcCC-CeEEEEEECCCCceEEecccch-hHHHHHhhcCcccEEEEEEEEe
Confidence 46677888543 7899999999999988777 5999999999999999998654 3343 35799999999999998
Q ss_pred eCCC
Q psy8087 132 KVPE 135 (658)
Q Consensus 132 ~~p~ 135 (658)
..|.
T Consensus 77 ~r~~ 80 (104)
T d1l0wa1 77 LRPE 80 (104)
T ss_dssp ECSS
T ss_pred eCCc
Confidence 7664
|
| >d1e1oa1 b.40.4.1 (A:11-153) Lysyl-tRNA synthetase (LysRS) {Escherichia coli, gene lysU [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Lysyl-tRNA synthetase (LysRS) species: Escherichia coli, gene lysU [TaxId: 562]
Probab=99.38 E-value=6.5e-13 Score=121.53 Aligned_cols=96 Identities=21% Similarity=0.166 Sum_probs=75.1
Q ss_pred CCCC-CCCccccccccccCCCc------cCCcEEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccch--hhh--h
Q psy8087 47 PFPL-FPSPCEVGYITCEGPAG------YIITNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILCQ--TEH--A 115 (658)
Q Consensus 47 ~~~~-~~~~~~~~~~~~~~~~~------~~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~~--~~~--~ 115 (658)
|||. |+.++++.++.+..... ..+..|+|+|||+++|.+|| ++|++|+|++|.||++++++... .|. .
T Consensus 24 pYP~~~~~t~~~~ei~~~~~~~~~~~~~~~~~~V~vaGRI~~~R~~Gk-~~F~~i~D~~g~iQi~~~~~~~~~~~~~~~~ 102 (143)
T d1e1oa1 24 AFPNDFRRDHTSDQLHEEFDAKDNQELESLNIEVSVAGRMMTRRIMGK-ASFVTLQDVGGRIQLYVARDSLPEGVYNDQF 102 (143)
T ss_dssp SSCCCCCCSCCHHHHHHHHTTCCHHHHHHHCCEEEEEEEEEEEEEETT-EEEEEEEETTEEEEEEEETTTSSTTHHHHTG
T ss_pred CCCCCCcCCccHHHHHHHHhcccchhhhccCceEEEEEEEEEEcccCC-eeEEEEEeCCceEEEEEccccchhhhHHHHH
Confidence 5555 66677777775432111 23568999999999999996 89999999999999999987542 232 2
Q ss_pred hcCCCccEEEEEEEeEeCCCCccceEec
Q psy8087 116 LLLSTESSVQFRGRIEKVPEENMKVQLI 143 (658)
Q Consensus 116 ~~l~~es~V~v~G~l~~~p~~~~d~~l~ 143 (658)
..+..||+|.|+|.+..+..|++.+.++
T Consensus 103 k~ld~GDiIgv~G~~~~TktGElsi~~~ 130 (143)
T d1e1oa1 103 KKWDLGDIIGARGTLFKTQTGELSIHCT 130 (143)
T ss_dssp GGCCTTCEEEEEEEEEECTTCCEEEEEE
T ss_pred hcCCcccEEEeecccEECCCCcEEEEee
Confidence 5799999999999999999998777764
|
| >d1eova1 b.40.4.1 (A:71-204) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Aspartyl-tRNA synthetase (AspRS) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.31 E-value=7.7e-12 Score=113.28 Aligned_cols=78 Identities=26% Similarity=0.236 Sum_probs=63.9
Q ss_pred ccCCcEEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccch-----hh-hhhcCCCccEEEEEEEeEeCCCC----
Q psy8087 67 GYIITNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILCQ-----TE-HALLLSTESSVQFRGRIEKVPEE---- 136 (658)
Q Consensus 67 ~~~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~~-----~~-~~~~l~~es~V~v~G~l~~~p~~---- 136 (658)
...|+.|+|+|||+++|++|++++|++|||++|.+|+++..+... .+ .+.+|+.||+|.|+|.|..+|.+
T Consensus 33 ~~~g~~V~v~GwV~~~R~~G~kl~F~~LrD~sg~iQ~~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~ 112 (134)
T d1eova1 33 KDSDKEVLFRARVHNTRQQGATLAFLTLRQQASLIQGLVKANKEGTISKNMVKWAGSLNLESIVLVRGIVKKVDEPIKSA 112 (134)
T ss_dssp TTTTCEEEEEEEEEEEEECSSSEEEEEEEETTEEEEEEEECCSSSSSCHHHHHHHTTCCTTCEEEEEEEEEECSSCCTTS
T ss_pred hcCCCEEEEEEEEEEEEeCCCcEEEEEEEcCCCcEEEEEEeccccchhHHHHHHHhcCCCCCEEEEEEEEEeCCccCCCC
Confidence 467899999999999999998899999999999999999875432 12 24589999999999999988753
Q ss_pred ---ccceEecC
Q psy8087 137 ---NMKVQLIH 144 (658)
Q Consensus 137 ---~~d~~l~~ 144 (658)
.+|+.+..
T Consensus 113 ~~~~~Ei~v~~ 123 (134)
T d1eova1 113 TVQNLEIHITK 123 (134)
T ss_dssp SEEEEEEEEEE
T ss_pred CCCcEEEEEEE
Confidence 25666543
|
| >d1n9wa1 b.40.4.1 (A:1-93) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Aspartyl-tRNA synthetase (AspRS) species: Thermus thermophilus, AspRS-2 [TaxId: 274]
Probab=99.29 E-value=7.8e-12 Score=105.98 Aligned_cols=68 Identities=24% Similarity=0.294 Sum_probs=59.0
Q ss_pred cCCcEEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccchhhhhhcCCCccEEEEEEEeEeCCC--CccceEec
Q psy8087 68 YIITNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPE--ENMKVQLI 143 (658)
Q Consensus 68 ~~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~~~~~~~~l~~es~V~v~G~l~~~p~--~~~d~~l~ 143 (658)
..|++|+|+|||+++|.+| +++|++|||++|.+||++++.. .++.||+|.|+|.+..+|. +.+|+.++
T Consensus 11 ~~g~~V~v~GwV~~~R~~g-k~~Fi~LrD~sg~iQ~v~~~~~-------~~~~e~~v~v~G~v~~~~~~~~~~Ei~v~ 80 (93)
T d1n9wa1 11 HVGQEVELLGFLHWRRDLG-RIQFLLLRDRSGVVQVVTGGLK-------LPLPESALRVRGLVVENAKAPGGLEVQAK 80 (93)
T ss_dssp CTTSEEEEEEEEEEEEECS-SEEEEEEEETTEEEEEEEESCC-------CCCTTCEEEEEEEEEECTTSTTSEEEEEE
T ss_pred cCCCEEEEEEEEEeEEeCC-CcEEEEEEcCCccceEEecccc-------ccccceEEEEEEEEEECCCCCCCEEEEEe
Confidence 5789999999999999887 4999999999999999998753 4778999999999999886 44666664
|
| >d1eova2 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.96 E-value=6.7e-11 Score=124.05 Aligned_cols=49 Identities=22% Similarity=0.327 Sum_probs=47.5
Q ss_pred CCChhhhcccceeeeechhhHHHHHHHHHHHHHHHHHhhcCCcEEecCC
Q psy8087 610 EALPDVQLDNRHIMIRGENTSRVLLMRSVLLQALRAHFADRNYTEVNIE 658 (658)
Q Consensus 610 ~~~~e~r~~~R~LdLR~~~~~~ifr~Rs~i~~~iR~fL~~~gF~EVeTp 658 (658)
.++.|+|++|||||||++.++++||+||+|++++|+||+++||+||+||
T Consensus 21 ~~~~e~r~~~R~lDlr~~~~~~ilr~Rs~i~~~iR~ff~~~gflEV~TP 69 (353)
T d1eova2 21 VVNLDTRLDYRVIDLRTVTNQAIFRIQAGVCELFREYLATKKFTEVHTP 69 (353)
T ss_dssp CCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCC
T ss_pred CCCHHHHhhhhHHhhCCHhHHHHHHHHHHHHHHHHHHHHHCCCEEEECC
Confidence 4689999999999999999999999999999999999999999999999
|
| >d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Thermus thermophilus, AspRS-1 [TaxId: 274]
Probab=98.96 E-value=1e-10 Score=122.85 Aligned_cols=49 Identities=18% Similarity=0.331 Sum_probs=47.0
Q ss_pred CCChhhhcccceeeeechhhHHHHHHHHHHHHHHHHHhhcCCcEEecCC
Q psy8087 610 EALPDVQLDNRHIMIRGENTSRVLLMRSVLLQALRAHFADRNYTEVNIE 658 (658)
Q Consensus 610 ~~~~e~r~~~R~LdLR~~~~~~ifr~Rs~i~~~iR~fL~~~gF~EVeTp 658 (658)
.++.|+|+++||||||++.++++||+||+|+++||+||.++||+||+||
T Consensus 17 ~~~~~~Rl~~R~LdLR~~~~~~ilr~Rs~i~~~iR~ff~~~gfiEV~TP 65 (356)
T d1l0wa3 17 EASEELRLKYRYLDLRRRRMQENLRLRHRVIKAIWDFLDREGFVQVETP 65 (356)
T ss_dssp CCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCC
T ss_pred ccCHHHHhhchhhhhCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECC
Confidence 4567899999999999999999999999999999999999999999999
|
| >d1jjca_ d.104.1.1 (A:) Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS species: Thermus thermophilus [TaxId: 274]
Probab=98.91 E-value=5.1e-09 Score=104.12 Aligned_cols=107 Identities=16% Similarity=0.057 Sum_probs=70.1
Q ss_pred CchHHHhhhCCcEEEcCCccccc--------cCC--CCcc---ceeeccC------------Ccceeec--cCHHHHHHH
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQT--------QVE--GGST---LFSLNFF------------GEPAYLT--QSSQLYLET 212 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~--------~~e--G~~~---~F~~~~~------------~~~~~L~--~Spqlylk~ 212 (658)
..|+++|.+.||-|++.|.+... .+. .|.+ .|.++.- ....-|| .|+-... .
T Consensus 24 ~~i~~if~~~GF~~~~gp~ies~~~NFDaLn~P~dHPAR~~~DTfYi~~~~~~~~~~~~~~~~~~~lLRTHTS~~q~r-~ 102 (266)
T d1jjca_ 24 RELVEIFRALGYQAVEGPEVESEFFNFDALNIPEHHPARDMWDTFWLTGEGFRLEGPLGEEVEGRLLLRTHTSPMQVR-Y 102 (266)
T ss_dssp HHHHHHHHTTTCEECCCCSEEEHHHHTGGGTCCTTSGGGGGSCCCBEECSSCCEECTTSCEECSCEEECSSSTHHHHH-H
T ss_pred HHHHHHHHHcCCeEeeCCccccchhhhhcccCCcccchhcccceEEEecccccccCcccccchhhhhhccCCcHHHHH-H
Confidence 58999999999999999987422 011 1111 1211100 1123454 4543322 2
Q ss_pred hcccC--CcEEEEeeeeecCCCCCccCcceeeeeeeEeecC--CHHHHHHHHHHHHHHHH
Q psy8087 213 CLPAL--GDVYCIAQSYRAENSRTRRHLAEYTHVEAECAFL--TFDDLLDKLEDLICDTV 268 (658)
Q Consensus 213 li~g~--~rvfeI~~~FR~E~~~~~rHl~EFt~lE~e~a~~--d~~~~m~~~e~li~~i~ 268 (658)
+..+. -|++.+|+|||+|.+|. +|.|+|.|+|.-.... ++.+++..++.+++.++
T Consensus 103 ~~~~~~p~~~~~~g~VyRrd~iD~-tH~p~FhQ~eg~~vd~~~~~~~Lk~~l~~~~~~~f 161 (266)
T d1jjca_ 103 MVAHTPPFRIVVPGRVFRFEQTDA-THEAVFHQLEGLVVGEGIAMAHLKGAIYELAQALF 161 (266)
T ss_dssp HHHSCSSEEEEEEEEEECCSCCCS-SCCSEEEEEEEEEEETTCCHHHHHHHHHHHHHHHH
T ss_pred HhccCCCceEEecccceecCCCCC-cccccceeeeeeeccccccHHHHHHHHHHHHHHhc
Confidence 22243 48999999999999976 9999999999877654 68888877777776553
|
| >d12asa_ d.104.1.1 (A:) Asparagine synthetase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Asparagine synthetase species: Escherichia coli [TaxId: 562]
Probab=98.25 E-value=1.9e-05 Score=77.75 Aligned_cols=258 Identities=15% Similarity=0.153 Sum_probs=164.5
Q ss_pred hhCCcEEEcCCccccccCCCCc------c-c--eeeccC-CcceeeccCHHHHHHHhcc--cC---CcEEEEeeeeec-C
Q psy8087 167 LANGIAKVTPPTLVQTQVEGGS------T-L--FSLNFF-GEPAYLTQSSQLYLETCLP--AL---GDVYCIAQSYRA-E 230 (658)
Q Consensus 167 ~~~gF~EV~TPiL~~~~~eG~~------~-~--F~~~~~-~~~~~L~~Spqlylk~li~--g~---~rvfeI~~~FR~-E 230 (658)
.+.+.++|..|+++.... |-. + | |.+..+ +..+-.-+|---|+.+++. || +.+|.=..+.|. |
T Consensus 22 ~~LnL~rVsAPLfv~~~s-GlNDnLnG~ErpV~F~ik~~~~~~~EiVhSLAKWKR~aL~~y~f~~geGlytdMnAiR~DE 100 (327)
T d12asa_ 22 ERLGLIEVQAPILSRVGD-GTQDNLSGAEKAVQVKVKALPDAQFEVVHSLAKWKRQTLGQHDFSAGEGLYTHMKALRPDE 100 (327)
T ss_dssp HHHCEEECCCCSEEETTS-SCSCCTTTTCCCCEECCSSSTTCCEEECSCCTTHHHHHHHHTTCCTTCEEEEEEEEECTTC
T ss_pred HHhCcEEecCCeEEcCCC-CcccCCCCeeeeeEEecCCCCCCeeEEEeehHHHHHHHHHhcCCCCCceeccCCccccCCc
Confidence 346999999999975433 211 1 2 444433 6778888999999998886 66 569998887775 6
Q ss_pred CCCCccCcceeeeeeeEeecCCHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCCCcceeeHHHHHHHHHHcCC
Q psy8087 231 NSRTRRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMATHGDLVRQMNPNFEPPARPFLRMNYADAIEYLRKHEI 310 (658)
Q Consensus 231 ~~~~~rHl~EFt~lE~e~a~~d~~~~m~~~e~li~~i~~~~~~~~~~~~~~~~~~~~~~~~pf~rit~~ea~~~l~~~g~ 310 (658)
+.-++.|.-=+-|-|||.....-+.-++.+.+.++.++..+..........+... ..+ | ..|+|..+.+++..+
T Consensus 101 d~ldn~HSiyVDQWDWEkvI~~~dR~l~~Lk~tV~~Iy~~ik~te~~v~~~y~~~-~~L--p-~~I~FitsqeL~~~Y-- 174 (327)
T d12asa_ 101 DRLSPLHSVYVDQWDWERVMGDGERQFSTLKSTVEAIWAGIKATEAAVSEEFGLA-PFL--P-DQIHFVHSQELLSRY-- 174 (327)
T ss_dssp SCCCSSCCSEEEEEEEEEECCTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHSCCC-CCS--C-SSCEEEEHHHHHHHS--
T ss_pred ccCCCceeEEEcccchhhhcCccccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcc-cCC--C-CceEEEehHHHHHHC--
Confidence 5324599999999999999876666677777777777777765433222222211 111 1 344554444444333
Q ss_pred CCCCCCCcccCCCCCCchhhhhhcccCCcEEEEeCCCCCCCC--CCccCCCCcCce---------eEEEEEeC------C
Q psy8087 311 RKPDNTEYEFGEDIPEMPERKMTDQINRPIMLCRFPADIKSF--YMSKCPENPALT---------ESVDVLFP------N 373 (658)
Q Consensus 311 ~~~~~~~~~~g~~l~~~~e~~l~~~~~~p~fi~~~P~~~~pf--y~~~~~~~~~~~---------~~fdL~~~------G 373 (658)
|++. ...=|..+.+.. .-|||+.---.++-= -..+.|+...+. ..=|+++- .
T Consensus 175 --P~Lt--------~keRE~~i~ke~-gAVFi~~IG~~L~~G~~Hd~RApDYDDW~t~~~~~~~gLNGDIlvw~~vl~~a 243 (327)
T d12asa_ 175 --PDLD--------AKGRERAIAKDL-GAVFLVGIGGKLSDGHRHDVRAPDYDDWSTPSELGHAGLNGDILVWNPVLEDA 243 (327)
T ss_dssp --SSSC--------HHHHHHHHHHHH-SEEEEECCSSCCSSSCCSSCCCTTTBCCSSBCTTSSBCSEEEEEEEETTTTEE
T ss_pred --CCCC--------hHHHHHHHHHHh-CcEEEEecCCcCCCCCcCCCCCCCCCcccCcccccccCccceEEEechhcCce
Confidence 1111 112233333322 346776633322210 011112222333 56677653 6
Q ss_pred cceeeeceeccCCHHHHHHHHHHcCCCCCCCcchHHHhhcC-CCCccceecchhHHHHHHhcccCcchhhHH
Q psy8087 374 VGEVIGGSMRIWDPEELLAGYKREGIDPAPYYWYTDQRKYG-STPHGGYGLGLERVLCWLLNQYHVRDKYQL 444 (658)
Q Consensus 374 ~~Ei~~G~~r~~d~~~~~~~~~~~g~~~~~~~~yl~a~~~G-~pP~gG~GiGidRL~m~l~g~~~Irdvi~f 444 (658)
+ ||.+.+.|.+. +.+++.++..|.+...--.|-.++-.| +|-|-|.|||=.||+|+|++..+|-+|.+=
T Consensus 244 ~-ElSSMGIRVd~-~~L~~QL~~~~~~~r~~l~~Hk~ll~~~LP~TIGGGIGQSRlcM~lL~KaHIGEVQaS 313 (327)
T d12asa_ 244 F-ELSSMGIRVDA-DTLKHQLALTGDEDRLELEWHQALLRGEMPQTIGGGIGQSRLTMLLLQLPHIGQVQAG 313 (327)
T ss_dssp E-EEEEEEEBCCH-HHHHHHHHHHTCTTGGGSHHHHHHHTTCSCCEEEEEEEHHHHHHHHHTCSCGGGTSCC
T ss_pred e-eeecceeEECH-HHHHHHHHHcCChhhhcCHHHHHHHcCCCCccccccccHHHHHHHHHccCcccceeee
Confidence 7 99999999865 889999988775543334577777777 899999999999999999999999999763
|
| >d1kmma2 d.104.1.1 (A:4-325) Histidyl-tRNA synthetase (HisRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Histidyl-tRNA synthetase (HisRS) species: Escherichia coli [TaxId: 562]
Probab=97.80 E-value=0.00012 Score=74.25 Aligned_cols=92 Identities=18% Similarity=0.253 Sum_probs=60.6
Q ss_pred CchHHHhhhCCcEEEcCCccccccC----CCC-c-----cceee-ccCCcceeeccC--HHHHH---HHhccc--CCcEE
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV----EGG-S-----TLFSL-NFFGEPAYLTQS--SQLYL---ETCLPA--LGDVY 221 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~----eG~-~-----~~F~~-~~~~~~~~L~~S--pqlyl---k~li~g--~~rvf 221 (658)
..+++.|...||.+|+||+|-.... .|. . ..+.. +.-|..+.||-- +++-. +..... --|+|
T Consensus 24 ~~l~~~f~~~Gy~~I~tP~lE~~d~~~~~~g~~~~~~~~~~~~~~d~~g~~l~Lr~D~T~~iaR~~~~~~~~~~~p~r~~ 103 (322)
T d1kmma2 24 GTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYTFEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLW 103 (322)
T ss_dssp HHHHHHHHTTTCEECBCCSEEEHHHHHHHHCTTSHHHHHTCEEEECTTSCEEEECSCSHHHHHHHHHHTTCSTTCCEEEE
T ss_pred HHHHHHHHHCCCeEeECcccccHHHhhcccCcchhhhHHHHhhhhhcccccccccccccchhhHHHHhhhhhhhhhhhHh
Confidence 4788999999999999999843210 111 1 12322 344678888743 22222 122211 24799
Q ss_pred EEeeeeecCCCCCccCcceeeeeeeEeecCC
Q psy8087 222 CIAQSYRAENSRTRRHLAEYTHVEAECAFLT 252 (658)
Q Consensus 222 eI~~~FR~E~~~~~rHl~EFt~lE~e~a~~d 252 (658)
.+|++||.|.....|. -||+|+.+|.-..+
T Consensus 104 y~g~v~r~~~~~~gr~-re~~Q~g~EiiG~~ 133 (322)
T d1kmma2 104 YIGPMFRHERPQKGRY-RQFHQLGCEVFGLQ 133 (322)
T ss_dssp EEEEEECCCCCBTTBC-SEEEEEEEEEESCC
T ss_pred hcccccccCCCCCCcc-chhhhhhHHHhccc
Confidence 9999999998766555 59999999998764
|
| >d1qe0a2 d.104.1.1 (A:1-325) Histidyl-tRNA synthetase (HisRS) {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Histidyl-tRNA synthetase (HisRS) species: Staphylococcus aureus [TaxId: 1280]
Probab=97.79 E-value=3.9e-05 Score=77.97 Aligned_cols=92 Identities=12% Similarity=0.132 Sum_probs=56.9
Q ss_pred CchHHHhhhCCcEEEcCCccccccC----CCCc------cceee-ccCCcceeeccCHHHHHHHhcc-c-----C---Cc
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV----EGGS------TLFSL-NFFGEPAYLTQSSQLYLETCLP-A-----L---GD 219 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~----eG~~------~~F~~-~~~~~~~~L~~Spqlylk~li~-g-----~---~r 219 (658)
+.+++.|...||-+|.||+|-.... .|.. ..|.. +..|....|+..+-.-..+.+. . . -|
T Consensus 24 ~~l~~~f~~~Gy~~I~tP~lE~~d~l~~~~g~~~~~~~~~~~~~~d~~~~~~~lr~d~t~~~~r~~~~~~~~~~~~~p~R 103 (325)
T d1qe0a2 24 NQLDELMTFYNYKEIRTPIFESTDLFARGVGDSTDVVQKEMYTFKDKGDRSITLRPEGTAAVVRSYIEHKMQGNPNQPIK 103 (325)
T ss_dssp HHHHHHHHHHTCEECBCCSEEEHHHHCC-----------CCEEECHHHHCCEEECSCSHHHHHHHHHHTTGGGCSSCSEE
T ss_pred HHHHHHHHHcCCeEeeCcccccHHHhccccCCchhHHHHHHhhhhccccccccccccccccHHHHHHhhccccccccchh
Confidence 4788999999999999999843210 1111 12221 2335667777665555444332 1 1 28
Q ss_pred EEEEeeeeecCCCCCccCcceeeeeeeEeecCC
Q psy8087 220 VYCIAQSYRAENSRTRRHLAEYTHVEAECAFLT 252 (658)
Q Consensus 220 vfeI~~~FR~E~~~~~rHl~EFt~lE~e~a~~d 252 (658)
+|.+|+|||.+.....|+ -||||+.+|.-..+
T Consensus 104 ~~Y~g~VfR~~~~~~~~~-rE~~Q~G~EiiG~~ 135 (325)
T d1qe0a2 104 LYYNGPMFRYERKQKGRY-RQFNQFGVEAIGAE 135 (325)
T ss_dssp EEEEEEEECC-------C-CEEEEEEEEEESCC
T ss_pred hheecceeeeccccCCcc-ceeeecceeecCCc
Confidence 999999999998765454 59999999998764
|
| >d1nyra4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Threonyl-tRNA synthetase (ThrRS) species: Staphylococcus aureus [TaxId: 1280]
Probab=97.25 E-value=0.00031 Score=70.29 Aligned_cols=106 Identities=14% Similarity=0.107 Sum_probs=73.5
Q ss_pred CchHHHhhhCCcEEEcCCccccccC---CC-----Cccceee--ccCCcceeeccCHHHHHHHhccc-------C-CcEE
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV---EG-----GSTLFSL--NFFGEPAYLTQSSQLYLETCLPA-------L-GDVY 221 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~---eG-----~~~~F~~--~~~~~~~~L~~Spqlylk~li~g-------~-~rvf 221 (658)
+.+|+.+.+.||.||.||.|..... .| +.+.|.+ ..-+.+++|+-..+-.+-.+... + =|+|
T Consensus 38 ~~~~~~~~~~G~~eV~~P~l~~~~l~~~sG~~~~~~~~~~~~~~~~~~~~~~L~pt~e~~~~~~~~~~~~sy~dLPlr~~ 117 (291)
T d1nyra4 38 RYIVDKEVSMGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPPMQLDETESMVLRPMNCPHHMMIYANKPHSYRELPIRIA 117 (291)
T ss_dssp HHHHHHHHHTTEEECBCCSEEETHHHHHHTHHHHCTTSSCCCEEETTTEEEEECSSSHHHHHHHHHTSCCBGGGCCEEEE
T ss_pred HHHHHHHHHcCCEEEECccccchhHhhhhccccccccceEEEeeccccccccccccchhHHHHhhhcEeccccccceEEe
Confidence 5789999999999999999975422 11 1123322 22356799998888776655431 3 3899
Q ss_pred EEeeeeecCCCCCccC----cceeeeeeeEeecCCHHHHHHHHHHHHHHH
Q psy8087 222 CIAQSYRAENSRTRRH----LAEYTHVEAECAFLTFDDLLDKLEDLICDT 267 (658)
Q Consensus 222 eI~~~FR~E~~~~~rH----l~EFt~lE~e~a~~d~~~~m~~~e~li~~i 267 (658)
++++|||+|.+.. .| .-||+|.|.+.- .+.+++.+.+++++..+
T Consensus 118 ~~~~~fR~E~~~~-~~Gl~Rvr~F~~~d~~~f-~~~eq~~~e~~~~~~~~ 165 (291)
T d1nyra4 118 ELGTMHRYEASGA-VSGLQRVRGMTLNDSHIF-VRPDQIKEEFKRVVNMI 165 (291)
T ss_dssp EEEEEECCCCTTT-CBTTTBCSEEEEEEEEEE-ECGGGHHHHHHHHHHHH
T ss_pred eccceeecCCCcc-cccccceeeeeeeeheee-cCCcccHHHHHHHHHHH
Confidence 9999999997533 21 249999999874 66677777676666543
|
| >d1z7ma1 d.104.1.1 (A:6-323) ATP phosphoribosyltransferase regulatory subunit HisZ {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: ATP phosphoribosyltransferase regulatory subunit HisZ species: Lactococcus lactis [TaxId: 1358]
Probab=97.22 E-value=0.00027 Score=71.31 Aligned_cols=92 Identities=15% Similarity=0.152 Sum_probs=57.8
Q ss_pred CchHHHhhhCCcEEEcCCccccc------cCCCC----ccceee-ccCCcceeecc--CHHHHHHHh---cccCCcEEEE
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQT------QVEGG----STLFSL-NFFGEPAYLTQ--SSQLYLETC---LPALGDVYCI 223 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~------~~eG~----~~~F~~-~~~~~~~~L~~--Spqlylk~l---i~g~~rvfeI 223 (658)
+.+++.|..+||.||+||++-.. ..+|. .+.|.. +.-|..+.||- .+++-.-.. .....|+|.+
T Consensus 23 ~~l~~~f~~~Gy~~I~tP~~E~~d~~~~~~~~~~~~~~~~~~~~~d~~g~~l~LRpD~T~~iaR~~~~~~~~~~~r~~Y~ 102 (318)
T d1z7ma1 23 GRLRKLFSLKNYQEVMPPSFEYTQLYTALESNGKTFNQEKMFQFIKHEGQSITLRYDFTLPLVRLYSQIKDSTSARYSYF 102 (318)
T ss_dssp HHHHHHHHHTTCEECCCCSEEEHHHHHHHHCSSSCCCTTSCCEEECTTCCEEEECCCSHHHHHHHHHTCCSCCCEEEEEE
T ss_pred HHHHHHHHHcCCEEEECCccchHHHhhccCCCcccccccceeEeecCCccEEEeeccccchHHHHHHHhcccCCcccccc
Confidence 47999999999999999998321 12221 123432 33467888873 234322111 1135689999
Q ss_pred eeeeecCCCCCccCcceeeeeeeEeecCC
Q psy8087 224 AQSYRAENSRTRRHLAEYTHVEAECAFLT 252 (658)
Q Consensus 224 ~~~FR~E~~~~~rHl~EFt~lE~e~a~~d 252 (658)
|+|||+|.... .+..||+|+.+|.-..+
T Consensus 103 g~vfR~~~~~~-~r~rE~~Q~g~EiiG~~ 130 (318)
T d1z7ma1 103 GKIFRKEKRHK-GRSTENYQIGIELFGES 130 (318)
T ss_dssp EECCCCCC--------CCEEEEEEEESSC
T ss_pred cceeEEccccc-cccchhhhhheeccccc
Confidence 99999998644 45679999999988765
|
| >d1qf6a4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Threonyl-tRNA synthetase (ThrRS) species: Escherichia coli [TaxId: 562]
Probab=97.01 E-value=0.0008 Score=67.20 Aligned_cols=112 Identities=13% Similarity=0.091 Sum_probs=77.0
Q ss_pred CchHHHhhhCCcEEEcCCccccccC---CC-----CccceeeccCCcceeeccCHHHHHHHhcc----c---C-CcEEEE
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV---EG-----GSTLFSLNFFGEPAYLTQSSQLYLETCLP----A---L-GDVYCI 223 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~---eG-----~~~~F~~~~~~~~~~L~~Spqlylk~li~----g---~-~rvfeI 223 (658)
+.+|+.+.+.||.||.||.|.+... .| +.+.|.+..-+..++|+-..+-..=.+.. + + -|+||+
T Consensus 38 ~~i~e~~~~~G~~eV~~P~L~~~~l~~~sG~~~~~~~~~~~~~~~~~~~~L~Pt~e~~~~~~~~~~~~sy~~LPl~~~q~ 117 (291)
T d1qf6a4 38 VFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSSENREYCIKPMNCPGHVQIFNQGLKSYRDLPLRMAEF 117 (291)
T ss_dssp HHHHHHHHHTTCEECCCCSEEETHHHHHHSHHHHHGGGCEEEEETTEEEEECSSSHHHHHHHHTTSCEEGGGCSEEEEEE
T ss_pred HHHHHHHHHcCCEEEEcccccchhHHhhhchhhhccchhccccccchhhcccccCcHHHHHHHHccccchhhcCeeEeec
Confidence 5788899999999999999975421 12 12345445557789999888855544432 2 3 479999
Q ss_pred eeeeecCCCCC---ccCcceeeeeeeEeecCCHHHHHHHHHHHHHHHHHHHhh
Q psy8087 224 AQSYRAENSRT---RRHLAEYTHVEAECAFLTFDDLLDKLEDLICDTVDRVMA 273 (658)
Q Consensus 224 ~~~FR~E~~~~---~rHl~EFt~lE~e~a~~d~~~~m~~~e~li~~i~~~~~~ 273 (658)
++|||+|.... -.=.-||+|-|.+. |..-++.++.++++++.+. .+..
T Consensus 118 ~~~fR~E~~~~~~Gl~R~reF~~~d~h~-f~~~e~~~~e~~~~~~~~~-~i~~ 168 (291)
T d1qf6a4 118 GSCHRNEPSGSLHGLMRVRGFTQDDAHI-FCTEEQIRDEVNGCIRLVY-DMYS 168 (291)
T ss_dssp EEEECCCCGGGCBTTTBCSEEEEEEEEE-EECGGGHHHHHHHHHHHHH-HHHG
T ss_pred ceeeecccccccccccccccceecccee-EecchhhHHHHHHHHHHHH-HHHH
Confidence 99999995321 11246999999999 5666677777777765443 4543
|
| >d1hc7a2 d.104.1.1 (A:5-276) Prolyl-tRNA synthetase (ProRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Prolyl-tRNA synthetase (ProRS) species: Thermus thermophilus [TaxId: 274]
Probab=96.60 E-value=0.0057 Score=59.55 Aligned_cols=107 Identities=13% Similarity=0.107 Sum_probs=70.7
Q ss_pred CchHHHhhhCCcEEEcCCcccccc-CC--CC-c-----cceeecc-----CCcceeeccCHHH-----HHHHhcc-c-C-
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQ-VE--GG-S-----TLFSLNF-----FGEPAYLTQSSQL-----YLETCLP-A-L- 217 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~-~e--G~-~-----~~F~~~~-----~~~~~~L~~Spql-----ylk~li~-g-~- 217 (658)
+.+++.+.+.||.||.||+|.... .. |. . +.|.... -+.+++|+-+.+- |...... . +
T Consensus 48 ~~~~~~~~~~G~~eV~~P~l~~~~l~~~sg~~~~~~~~~m~~~~~~~~~~~~~~~~L~pt~e~~~~~~~~~~~~s~~~LP 127 (272)
T d1hc7a2 48 QVLDRMFKETGHQNAYFPLFIPMSFLRKEAEHVEGFSPELAVVTHAGGEELEEPLAVRPTSETVIGYMWSKWIRSWRDLP 127 (272)
T ss_dssp HHHHHHHHHTTCEECBCCSEEESTTC---------CCTTCEEEEEESSSEEEEEEEECSCSHHHHHHHHHHHCCBGGGCC
T ss_pred HHHHHHHHHcCCeEEeeccccchHHhhhcccchhhcccceeeeeccccccccchhhcccccccceeehhhceeccccccc
Confidence 478888999999999999885433 22 21 1 2232221 2346899888774 4444443 1 3
Q ss_pred CcEEEEeeeeecCCCCCc--cCcceeeeeeeEeecCCHHHHHHHHHHHHHHH
Q psy8087 218 GDVYCIAQSYRAENSRTR--RHLAEYTHVEAECAFLTFDDLLDKLEDLICDT 267 (658)
Q Consensus 218 ~rvfeI~~~FR~E~~~~~--rHl~EFt~lE~e~a~~d~~~~m~~~e~li~~i 267 (658)
-|+|++++|||+|.+... | .-+|+|.|.++...+..+.....++++...
T Consensus 128 lr~~~~~~~fR~E~~~~g~~r-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (272)
T d1hc7a2 128 QLLNQWGNVVRWEMRTRPFLR-TSEFLWQEGHTAHATREEAEEEVRRMLSIY 178 (272)
T ss_dssp EEEEEEEEEECCCSSCBTTTB-CSEEEEEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred eeeeecccccccccccccccc-eEEEEEEhhhhhhcccccchhHHHHHHHHH
Confidence 479999999999965321 2 248999999998888877777666655443
|
| >d1wu7a2 d.104.1.1 (A:3-329) Histidyl-tRNA synthetase (HisRS) {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Histidyl-tRNA synthetase (HisRS) species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=96.06 E-value=0.013 Score=58.67 Aligned_cols=90 Identities=16% Similarity=0.138 Sum_probs=61.1
Q ss_pred CchHHHhhhCCcEEEcCCcccccc----CCCC---cccee-eccCCcceeeccCHHHHHH--Hhcc---c--C-CcEEEE
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQ----VEGG---STLFS-LNFFGEPAYLTQSSQLYLE--TCLP---A--L-GDVYCI 223 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~----~eG~---~~~F~-~~~~~~~~~L~~Spqlylk--~li~---g--~-~rvfeI 223 (658)
+.+++.|.+.||.+|+||+|-..+ ..|. .+.|. .+--|..+.|| |++=.+ +.+. . . -|+|.+
T Consensus 26 ~~l~~~f~~~Gy~~I~tP~lE~~d~~~~~~g~~~~~~~~~f~D~~g~~l~LR--pD~T~~iar~~~~~~~~~~p~k~~y~ 103 (327)
T d1wu7a2 26 KTAEEAAEAFGFRRIDFPSLEYLDLYRIKSGEELLQQTYSFVDKGGREVTLI--PEATPSTVRMVTSRKDLQRPLRWYSF 103 (327)
T ss_dssp HHHHHHHHHTTCEECBCCSEEETHHHHTTSCTTGGGGSCEEECTTSCEEEEC--SCSHHHHHHHHTTCTTCCSSEEEEEC
T ss_pred HHHHHHHHHcCCeEeECCccchHhhccccCchhHHHHHhhhhcccchhhccc--ccccchhhhHhhhhhhccccceeecc
Confidence 478999999999999999883221 1121 23453 34457788887 333222 2222 1 2 389999
Q ss_pred eeeeecCCCCCccCcceeeeeeeEeecCC
Q psy8087 224 AQSYRAENSRTRRHLAEYTHVEAECAFLT 252 (658)
Q Consensus 224 ~~~FR~E~~~~~rHl~EFt~lE~e~a~~d 252 (658)
|++||.+.... .+.-||+|+.+|.-..+
T Consensus 104 g~VfR~~~~~~-g~~re~~Q~G~EiiG~~ 131 (327)
T d1wu7a2 104 PKVWRYEEPQA-GRYREHYQFNADIFGSD 131 (327)
T ss_dssp CEEECCCCSCS-SCCSEEEEEEEEEESCC
T ss_pred Ccceecccccc-CCcchhhhhhhhhcCCc
Confidence 99999998754 45569999999998875
|
| >d1b76a2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Glycyl-tRNA synthetase (GlyRS) species: Thermus thermophilus [TaxId: 274]
Probab=95.78 E-value=0.0071 Score=61.17 Aligned_cols=108 Identities=15% Similarity=0.129 Sum_probs=65.0
Q ss_pred CchHHHh--hhCCcEEEcCCcccccc---CCCCccce-----------------------eec-----cCCcceeec--c
Q psy8087 160 GYPPEVS--LANGIAKVTPPTLVQTQ---VEGGSTLF-----------------------SLN-----FFGEPAYLT--Q 204 (658)
Q Consensus 160 ~~iR~fl--~~~gF~EV~TPiL~~~~---~eG~~~~F-----------------------~~~-----~~~~~~~L~--~ 204 (658)
..+|+.+ .+.|+.||.||+|.+.. ..|.-..| .++ .-+...||+ .
T Consensus 47 ~~wr~~~v~~~~~~~ev~tp~i~~~~lw~~SGH~~~f~d~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~t 126 (331)
T d1b76a2 47 QAWWRRNVYERDDMEGLDASVLTHRLVLHYSGHEATFADPMVDNAKARYWTPPRYFNMMFQDLRGPRGGRGLLAYLRPET 126 (331)
T ss_dssp HHHHHHHTTSCSSEEEEBCCSEEEHHHHHHTSHHHHCEEEECBSSSCBCCCCCEEEECCEEEECSSSCCGGGEEEECSCT
T ss_pred HHHHHHHHhccCCeEEEeccccCChHHhccCccccccCCceeeecccccccCccchhhccccccccccccCCcccccCcc
Confidence 4677765 46799999999996442 11221111 111 113456777 4
Q ss_pred CHHHHHHH---hccc---C-CcEEEEeeeeecCCCCCccC----cceeeeeeeEeecCCHHHHHHHHHHHHHHHHHH
Q psy8087 205 SSQLYLET---CLPA---L-GDVYCIAQSYRAENSRTRRH----LAEYTHVEAECAFLTFDDLLDKLEDLICDTVDR 270 (658)
Q Consensus 205 Spqlylk~---li~g---~-~rvfeI~~~FR~E~~~~~rH----l~EFt~lE~e~a~~d~~~~m~~~e~li~~i~~~ 270 (658)
++..+... +..+ + =|++|||.|||||-+ . +| .=||||.|+|. |.+-++..+.....+..+.+.
T Consensus 127 ~~~~~~~~~~~~~~syk~LP~~~aqig~~fR~E~s-~-~~gl~RvReFtq~D~~~-F~~~~q~~~~~~~~~~~~~~~ 200 (331)
T d1b76a2 127 AQGIFVNFKNVLDATSRKLGFGIAQIGKAFRNEIT-P-RNFIFRVREFEQMEIEY-FVRPGEDEYWHRYWVEERLKW 200 (331)
T ss_dssp HHHHHTTHHHHHHHHTCCSSEEEEEEEEEECCCSS-C-CTTTTSCSEEEEEEEEE-EECGGGHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHhHHhccccccchhhhhccceeccccc-c-cccccccchhhhhhhhh-hcCCcchhHHHHHHHHHHHHH
Confidence 44444332 2222 3 369999999999975 4 44 34999999987 566667666655555554443
|
| >d1h4vb2 d.104.1.1 (B:2-325) Histidyl-tRNA synthetase (HisRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Histidyl-tRNA synthetase (HisRS) species: Thermus thermophilus [TaxId: 274]
Probab=95.58 E-value=0.025 Score=56.43 Aligned_cols=92 Identities=17% Similarity=0.214 Sum_probs=57.2
Q ss_pred CchHHHhhhCCcEEEcCCcccccc----CCCCc------cceee-ccCCcceeeccC--HHHHHHHhccc---C---CcE
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQ----VEGGS------TLFSL-NFFGEPAYLTQS--SQLYLETCLPA---L---GDV 220 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~----~eG~~------~~F~~-~~~~~~~~L~~S--pqlylk~li~g---~---~rv 220 (658)
+.+++.|...||.||+||+|-... ..|.. ..|.. +.-|+.+.||-- +++..-.+..+ . -|.
T Consensus 24 ~~l~~~f~~~Gy~~I~tP~lE~~d~l~~~~g~~~~~~~~~~~~~~d~~g~~l~LRpD~T~~iar~~~~~~~~~~~~p~r~ 103 (324)
T d1h4vb2 24 ATARKVLEAAGALELVTPIFEETQVFEKGVGAATDIVRKEMFTFQDRGGRSLTLRPEGTAAMVRAYLEHGMKVWPQPVRL 103 (324)
T ss_dssp HHHHHHHHHTTCEECCCCSEEEGGGGCCCSCC------CCSCEEECTTSCEEEECCCSHHHHHHHHHHTTGGGSSSSEEE
T ss_pred HHHHHHHHHcCCeEeeCCccccHHHhhcccCCchhHHHHHHhhhhccCCcccccccccccHHHHHHHHhhhhhhchhhhh
Confidence 578899999999999999983221 11221 22322 334677888732 22222111112 2 389
Q ss_pred EEEeeeeecCCCCCccCcceeeeeeeEeecCC
Q psy8087 221 YCIAQSYRAENSRTRRHLAEYTHVEAECAFLT 252 (658)
Q Consensus 221 feI~~~FR~E~~~~~rHl~EFt~lE~e~a~~d 252 (658)
|.+|++||.+.....| .-||+|+.+|.-..+
T Consensus 104 ~Y~g~VfR~~~~~~gr-~re~~Q~g~EiiG~~ 134 (324)
T d1h4vb2 104 WMAGPMFRAERPQKGR-YRQFHQVNYEALGSE 134 (324)
T ss_dssp EEEEEEECCCCC-----CCEEEEEEEEEESCC
T ss_pred eeeCcccccCcccCCC-cceeccccccccCCC
Confidence 9999999999875433 469999999987763
|
| >d1seta2 d.104.1.1 (A:111-421) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Seryl-tRNA synthetase (SerRS) species: Thermus thermophilus, strain hb27 [TaxId: 274]
Probab=95.44 E-value=0.042 Score=54.75 Aligned_cols=106 Identities=14% Similarity=0.239 Sum_probs=71.9
Q ss_pred CchHHHhhhCCcEEEcCCccccccC-CCCc-------cceeeccCCcceeeccCHHHHHHHhccc-------C-CcEEEE
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV-EGGS-------TLFSLNFFGEPAYLTQSSQLYLETCLPA-------L-GDVYCI 223 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~-eG~~-------~~F~~~~~~~~~~L~~Spqlylk~li~g-------~-~rvfeI 223 (658)
+.+.+++.++||.||.||.|..... +|.+ +.|.+ -+.++||.-..|.-+=.+... + -|++++
T Consensus 64 ~~~ld~~~~~gy~~v~~P~lv~~~~~~~~G~~p~f~~~~y~~--~~~~~~LipTsE~~l~~~~~~~i~~~~~LPlr~~~~ 141 (311)
T d1seta2 64 RFAMDFMARRGFLPMTLPSYAREKAFLGTGHFPAYRDQVWAI--AETDLYLTGTAEVVLNALHSGEILPYEALPLRYAGY 141 (311)
T ss_dssp HHHHHHHHHTTCEEEECCSEEEHHHHHHHTCTTTTGGGSCBB--TTSSEEECSSTHHHHHHTTTTCEEEGGGCSEEEEEE
T ss_pred HHHHHhhhcccceEEeechhhccchhhhcccccccccccccc--cccceeecccccchhhhhhhhhhhhhhhccceEEee
Confidence 4677788899999999999975432 2211 12322 245789997777765544331 2 279999
Q ss_pred eeeeecCCCCC------ccCcceeeeeeeEeec-CCHHHHHHHHHHHHHHH
Q psy8087 224 AQSYRAENSRT------RRHLAEYTHVEAECAF-LTFDDLLDKLEDLICDT 267 (658)
Q Consensus 224 ~~~FR~E~~~~------~rHl~EFt~lE~e~a~-~d~~~~m~~~e~li~~i 267 (658)
++|||.|.... --...+|+.+|....- .+.++..+..++++...
T Consensus 142 s~cfR~Eag~~g~~trGL~RvhQF~kvE~~~~~~~~~e~s~~~~~~~~~~~ 192 (311)
T d1seta2 142 APAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLENA 192 (311)
T ss_dssp EEEECCCCSCTTSSCSTTSSCSEEEEEEEEEEECSCHHHHHHHHHHHHHHH
T ss_pred cccchhhhccccccchhhhhhcccchhhhheeeccccccchhHHHHHHHHH
Confidence 99999996321 1134599999987553 36888888888887654
|
| >d1nj8a3 d.104.1.1 (A:0-267) Prolyl-tRNA synthetase (ProRS) {Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Prolyl-tRNA synthetase (ProRS) species: Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]
Probab=95.42 E-value=0.035 Score=54.09 Aligned_cols=104 Identities=17% Similarity=0.217 Sum_probs=66.7
Q ss_pred CchHHHhhhCCcEEEcCCccccccC---CCC------ccceeeccCC-----cceeeccCHHHHHHHhcc----c---C-
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQV---EGG------STLFSLNFFG-----EPAYLTQSSQLYLETCLP----A---L- 217 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~~---eG~------~~~F~~~~~~-----~~~~L~~Spqlylk~li~----g---~- 217 (658)
..+|+.+.+.||.||.||.|.+... .|+ .+.|...+-| .+++|+-..+-..=.+.. + +
T Consensus 43 ~~i~~~~~~~G~~ev~~P~l~~~~l~~ks~~~~~~~~~~~~~~~~~~~~~~~~~~~L~P~~~~~~~~i~~~~~~Syr~LP 122 (268)
T d1nj8a3 43 EIIRNLLDESGHDEALFPMLIPEDLLAKEAEHIKGFEDEVYWVTHGGKTQLDVKLALRPTSETPIYYMMKLWVKVHTDLP 122 (268)
T ss_dssp HHHHHHHHHTTCEECBCCSEEEHHHHHHHCSSSGGGGGGCEEEEESSSSEEEEEEEECSSSHHHHHHHHHTTCCBTTSCC
T ss_pred HHHHHHHHHcCCeEEeehhhhhhHhhhccCCCccccccceeEEeccccccchhhhhcccCCCchhHHhhhhhccchhhhh
Confidence 4788889999999999999853211 122 1234333322 358998777655444332 1 2
Q ss_pred CcEEEEeeeeecCCCCCccC----cceeeeee-eEeecCCHHHHHHHHHHHHH
Q psy8087 218 GDVYCIAQSYRAENSRTRRH----LAEYTHVE-AECAFLTFDDLLDKLEDLIC 265 (658)
Q Consensus 218 ~rvfeI~~~FR~E~~~~~rH----l~EFt~lE-~e~a~~d~~~~m~~~e~li~ 265 (658)
=|+||+|+|||+|.. . +| .-||++.| .+....+-++..+..+.++.
T Consensus 123 ~r~~e~~~~fR~E~~-~-~~GllR~reF~~~dd~~~~~~~~~~~~~~~~~~~~ 173 (268)
T d1nj8a3 123 IKIYQIVNTFRYETK-H-TRPLIRLREIMTFKEAHTAHSTKEEAENQVKEAIS 173 (268)
T ss_dssp CCEEEEECCBCCCCS-C-CBTTTBCSBCSCEEEEEEEESSHHHHHHHHHHHHH
T ss_pred eEEeecccccccccc-c-cccceeEEEEeeechhceeccccchhhHHHHHHHH
Confidence 479999999999943 2 22 34997554 56666687777766666553
|
| >d1nnxa_ b.40.10.1 (A:) Hypothetical protein YgiW {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Hypothetical protein YgiW family: Hypothetical protein YgiW domain: Hypothetical protein YgiW species: Escherichia coli [TaxId: 562]
Probab=94.87 E-value=0.095 Score=43.53 Aligned_cols=73 Identities=19% Similarity=0.225 Sum_probs=56.0
Q ss_pred ccCCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEcCCccchHHh-ccCCCCcEEEEEEEEEecCCCCCCCCceEE
Q psy8087 509 KYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGSGFIQCVLADILCQTEHA-LLLSTESSVQFRGRIEKVPEGKSAPGGHEL 587 (658)
Q Consensus 509 ~~~g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~~iQvv~~~~~~~~~~~-~~L~~gs~V~V~G~v~~~~~~~~~~g~~El 587 (658)
...+..|+|.|.|.+.-..-+ +.++|++|.|+|-++.+. |. ..+++++-|.|.|.+-+. -+..||
T Consensus 33 ~~Ddt~V~L~G~Iv~~l~~d~----Y~F~D~TG~I~VeId~~~----w~g~~v~p~~kV~i~GevDk~------~~~~eI 98 (106)
T d1nnxa_ 33 LRDDTWVTLRGNIVERISDDL----YVFKDASGTINVDIDHKR----WNGVTVTPKDTVEIQGEVDKD------WNSVEI 98 (106)
T ss_dssp SCSSEEEEEEEEEEEEEETTE----EEEEETTEEEEEECCGGG----STTCCCCTTSCEEEEEEEEEE------TTEEEE
T ss_pred CcCCCeEEEEEEEEEEeCCce----EEEECCCCcEEEEEChhh----cCCcccCCCCEEEEEEEEcCC------CCceEE
Confidence 345778999999988755432 677999999999987532 22 369999999999999542 245799
Q ss_pred EEEEEEEE
Q psy8087 588 KVDYWEVV 595 (658)
Q Consensus 588 ~~~~i~vl 595 (658)
.|+.|++|
T Consensus 99 dV~~I~~l 106 (106)
T d1nnxa_ 99 DVKQIRKV 106 (106)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEEC
Confidence 99999875
|
| >d2pi2a1 b.40.4.3 (A:44-171) Replication protein A 32 KDa subunit (RPA32) fragment {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Single strand DNA-binding domain, SSB domain: Replication protein A 32 KDa subunit (RPA32) fragment species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.82 E-value=0.099 Score=44.91 Aligned_cols=78 Identities=12% Similarity=0.090 Sum_probs=56.3
Q ss_pred cEEEEEEEEEeeecCCCceEEEEEEeCCE-EEEEEEcCCccc-hHHhccCCCCcEEEEEEEEEecCCCCCCCCceEEEEE
Q psy8087 513 KRVTIFGWVHRLRRQGKGLMFVTLRDGSG-FIQCVLADILCQ-TEHALLLSTESSVQFRGRIEKVPEGKSAPGGHELKVD 590 (658)
Q Consensus 513 ~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~~-~iQvv~~~~~~~-~~~~~~L~~gs~V~V~G~v~~~~~~~~~~g~~El~~~ 590 (658)
..|+|-|+|.++.....+ .-+.|-|++| .|.|..-.+... ......+..|+.|.|.|.++.- .|...|.+.
T Consensus 29 ~~V~iVG~V~~i~~~~t~-~~y~idDgTG~~i~v~~w~~~~~~~~~~~~i~~g~yVrV~G~lk~f------~~~~~i~~~ 101 (128)
T d2pi2a1 29 SQVTIVGIIRHAEKAPTN-IVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPPETYVKVAGHLRSF------QNKKSLVAF 101 (128)
T ss_dssp SEEEEEEEEEEEEECSSE-EEEEEECSSSSCEEEEEECC-------CCCCCTTCEEEEEEEEEEE------TTEEEEEEE
T ss_pred EEEEEEEEEEEEEecCCE-EEEEEECCCCCcEEEEEECCCCCCccccccccCCCEEEEEEEEEee------CCeEEEEEE
Confidence 468999999999888754 4569999999 588887543222 2334579999999999999643 356678888
Q ss_pred EEEEEec
Q psy8087 591 YWEVVGL 597 (658)
Q Consensus 591 ~i~vls~ 597 (658)
.+..+..
T Consensus 102 ~i~~v~d 108 (128)
T d2pi2a1 102 KIMPLED 108 (128)
T ss_dssp EEEECSC
T ss_pred EEEEeCC
Confidence 8876554
|
| >d1nj1a3 d.104.1.1 (A:19-283) Prolyl-tRNA synthetase (ProRS) {Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Prolyl-tRNA synthetase (ProRS) species: Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]
Probab=93.75 E-value=0.075 Score=51.32 Aligned_cols=102 Identities=17% Similarity=0.195 Sum_probs=61.9
Q ss_pred CchHHHhhhCCcEEEcCCcccccc-C--CCC------ccceeeccC-----CcceeeccCHHHHHHHhcc----c---C-
Q psy8087 160 GYPPEVSLANGIAKVTPPTLVQTQ-V--EGG------STLFSLNFF-----GEPAYLTQSSQLYLETCLP----A---L- 217 (658)
Q Consensus 160 ~~iR~fl~~~gF~EV~TPiL~~~~-~--eG~------~~~F~~~~~-----~~~~~L~~Spqlylk~li~----g---~- 217 (658)
..+|+.+ ++||.||.||.|.... . .+| .+.|.+..- +.+++|+-+.+-..=.+.. + +
T Consensus 41 ~~~~~~~-~~G~~ev~~P~l~~~~~l~~~sgh~~~~~~e~f~~~~~~~~~~~~~~~L~pt~~~~~~~~~~~~~~SyrdLP 119 (265)
T d1nj1a3 41 KILRRIL-DRDHEEVLFPLLVPEDELAKEAIHVKGFEDEVYWVTHGGLSKLQRKLALRPTSETVMYPMFALWVRSHTDLP 119 (265)
T ss_dssp HHHHHHH-TTTCEECCCCSEEEHHHHTTSHHHHHHTTTTCCEEEEETTEEEEEEEEECSSSHHHHHHHHHHHCCBTTTCC
T ss_pred HHHHHHH-HhcCceehhhhhhhhhhhhhcccccccccccceeeeccCccccceeEEeecccccceEEeeeeeeccccccc
Confidence 3677765 5699999999875332 1 111 234544322 3468998877655443332 2 3
Q ss_pred CcEEEEeeeeecCCCCCccC----cceeeee-eeEeecCCHHHHHHHHHHHH
Q psy8087 218 GDVYCIAQSYRAENSRTRRH----LAEYTHV-EAECAFLTFDDLLDKLEDLI 264 (658)
Q Consensus 218 ~rvfeI~~~FR~E~~~~~rH----l~EFt~l-E~e~a~~d~~~~m~~~e~li 264 (658)
=|+||+|+|||+|.. . +| .=|||++ +.+....+-++.....+.++
T Consensus 120 lr~~q~~~~fR~E~~-~-~~Gl~R~reF~~~~d~~~~~~~~~~~~~e~~~~~ 169 (265)
T d1nj1a3 120 MRFYQVVNTFRYETK-H-TRPLIRVREITTFKEAHTIHATASEAEEQVERAV 169 (265)
T ss_dssp EEEEEEEEEECCCCS-C-CBTTTBCSEEEEEEEEEEEESSHHHHHHHHHHHH
T ss_pred eEEEeeccceeeecc-c-CcCCEEEEEEEEeccceeecCCHHHHHHHhhhhH
Confidence 379999999999943 2 22 3499865 45555567666655554444
|
| >d1usya_ d.104.1.1 (A:) ATP phosphoribosyltransferase regulatory subunit HisZ {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: ATP phosphoribosyltransferase regulatory subunit HisZ species: Thermotoga maritima [TaxId: 2336]
Probab=93.71 E-value=0.091 Score=51.09 Aligned_cols=82 Identities=15% Similarity=0.095 Sum_probs=53.6
Q ss_pred hHHHhhhCCcEEEcCCccccccCCCCccceeeccCCcceeeccCHHHHHH--Hhcc--cC---CcEEEEeeeeecCCCCC
Q psy8087 162 PPEVSLANGIAKVTPPTLVQTQVEGGSTLFSLNFFGEPAYLTQSSQLYLE--TCLP--AL---GDVYCIAQSYRAENSRT 234 (658)
Q Consensus 162 iR~fl~~~gF~EV~TPiL~~~~~eG~~~~F~~~~~~~~~~L~~Spqlylk--~li~--g~---~rvfeI~~~FR~E~~~~ 234 (658)
+++-..++||-||.||+|-...... ...| .+--|+.+.|| |++=.+ ++++ .. -|+|.+|+|||.++.
T Consensus 12 f~~~~~~~Gy~~i~tP~~E~~e~~~-~~~F-~D~~g~~l~LR--pD~T~~iaR~~~~~~~~~p~k~~Y~g~VfR~~~~-- 85 (275)
T d1usya_ 12 FYSKATKKGFSPFFVPALEKAEEPA-GNFF-LDRKGNLFSIR--EDFTKTVLNHRKRYSPDSQIKVWYADFVYRYSGS-- 85 (275)
T ss_dssp HHHHHHHTTCEECCCCSEEECSSCC-SSCE-EETTSCEEEEC--CCHHHHHHHHHTTCTTCCCEEEECCEEEEEEETT--
T ss_pred HHHHHHHcCCceeecCccccccccc-ccee-EcCCCCEEEEC--CCCcHHHHHHHHHcCCCCCeeeeEEeeEEEeCCC--
Confidence 3444458999999999996443222 2233 34447778887 333333 2222 22 289999999998764
Q ss_pred ccCcceeeeeeeEeecC
Q psy8087 235 RRHLAEYTHVEAECAFL 251 (658)
Q Consensus 235 ~rHl~EFt~lE~e~a~~ 251 (658)
+.-||+|+.+|.-..
T Consensus 86 --~~re~~Q~G~EiiG~ 100 (275)
T d1usya_ 86 --DLVAEYQLGLEKVPR 100 (275)
T ss_dssp --EEEEEEEEEEEEESC
T ss_pred --cccceeecCceeech
Confidence 345999999998765
|
| >d1jmca1 b.40.4.3 (A:183-298) Replication protein A 70 KDa subunit (RPA70) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Single strand DNA-binding domain, SSB domain: Replication protein A 70 KDa subunit (RPA70) species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.04 E-value=0.096 Score=44.13 Aligned_cols=95 Identities=17% Similarity=0.130 Sum_probs=63.5
Q ss_pred ecccCCccCCcEEEEEEEEEee---e---cC-CC-ceEEEEEEeCCEEEEEEEcCCccchHHhccCCCCcEEEEEEE-EE
Q psy8087 503 KIKDGEKYRDKRVTIFGWVHRL---R---RQ-GK-GLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGR-IE 573 (658)
Q Consensus 503 ~i~~~~~~~g~~V~v~GwI~~~---R---~~-Gk-kl~Fi~Lrd~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~-v~ 573 (658)
.|+++.. ....++|.|||.++ | .. |. ++.-++|.|.+|.|++++-.+.. ......|..|++..++|. |.
T Consensus 4 PI~~L~p-~~~~~~I~~RV~~k~~~r~f~~~~~~g~v~~~~l~De~G~I~~t~~~~~~-~~f~~~l~~G~vy~i~~~~V~ 81 (116)
T d1jmca1 4 PIASLTP-YQSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVDESGEIRATAFNEQV-DKFFPLIEVNKVYYFSKGTLK 81 (116)
T ss_dssp CGGGCCT-TCCCCEEEEEEEEECCCEEEECSSCEEEEEEEEEECSSCEEEEEEEHHHH-HHHGGGCCTTCEEEEECCEEE
T ss_pred eHHHcCC-CCCCEEEEEEEEEeccceEEECCCCCceEEEEEEEcCCCCEEEEEchhhh-hhhHhhcccCCEEEEcceEEE
Confidence 3555443 23458899999754 2 22 11 57788999999999999975332 133457999999999964 44
Q ss_pred ecCCC-CCCCCceEEEEEEEEEEecCC
Q psy8087 574 KVPEG-KSAPGGHELKVDYWEVVGLAP 599 (658)
Q Consensus 574 ~~~~~-~~~~g~~El~~~~i~vls~~~ 599 (658)
..... +...+.+||.....+.+.+|+
T Consensus 82 ~~~~~y~~~~~~yei~f~~~T~I~~~~ 108 (116)
T d1jmca1 82 IANKQFTAVKNDYEMTFNNETSVMPCE 108 (116)
T ss_dssp ECCGGGCCCCCSEEEECCTTCEEEECC
T ss_pred EccCcEeccCCcEEEEECCCcEEEECC
Confidence 33211 233578999998777777774
|
| >d2pi2e1 b.40.4.3 (E:3-117) Replication protein A 14 KDa (RPA14) subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Single strand DNA-binding domain, SSB domain: Replication protein A 14 KDa (RPA14) subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.65 E-value=0.38 Score=40.39 Aligned_cols=77 Identities=19% Similarity=0.212 Sum_probs=56.5
Q ss_pred eecccCCccCCcEEEEEEEEEeeecCCCceEEEEEEeCC-EEEEEEEcCCccchHHhccCCCCcEEEEEEEEEecCCCCC
Q psy8087 502 IKIKDGEKYRDKRVTIFGWVHRLRRQGKGLMFVTLRDGS-GFIQCVLADILCQTEHALLLSTESSVQFRGRIEKVPEGKS 580 (658)
Q Consensus 502 ~~i~~~~~~~g~~V~v~GwI~~~R~~Gkkl~Fi~Lrd~~-~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~~~~~~ 580 (658)
+.-.-+..+.|+.|++-|+|.+++..|+ -+++++.. +.++|.++... ....+.+|.|.|++
T Consensus 10 Vn~~~L~~~~Gk~V~ivGkV~~v~~~g~---~~~~~s~D~~~V~v~l~~~~-------~~~~~~~vEViG~V-------- 71 (115)
T d2pi2e1 10 INAGMLAQFIDKPVCFVGRLEKIHPTGK---MFILSDGEGKNGTIELMEPL-------DEEISGIVEVVGRV-------- 71 (115)
T ss_dssp ECGGGGGGSTTCEEEEEEEEEEECTTSS---EEEEECTTSCEEEEECSSCC-------SSCCCSEEEEEEEE--------
T ss_pred ECHHHHHhhCCCeEEEEEEEEEEcCCCC---EEEEEcCCCCEEEEEeCCCC-------CCccCCeEEEEEEE--------
Confidence 3333457789999999999999998875 34566644 46888877532 24678899999999
Q ss_pred CCCceEEEEEEEEEEec
Q psy8087 581 APGGHELKVDYWEVVGL 597 (658)
Q Consensus 581 ~~g~~El~~~~i~vls~ 597 (658)
.+..+|.+..+.-++.
T Consensus 72 -~~~~sI~~~~~~~fg~ 87 (115)
T d2pi2e1 72 -TAKATILCTSYVQFKE 87 (115)
T ss_dssp -CTTSCEEEEEEEECCC
T ss_pred -CCCCcEEEEEEEEcCC
Confidence 3455688888876653
|
| >d1o7ia_ b.40.4.3 (A:) Archaeal ssDNA-binding protein {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Single strand DNA-binding domain, SSB domain: Archaeal ssDNA-binding protein species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=91.89 E-value=0.59 Score=38.93 Aligned_cols=85 Identities=16% Similarity=0.130 Sum_probs=57.6
Q ss_pred ecccCCccCCcEEEEEEEEEee---ecC----C-CceEEEEEEeCCEEEEEEEcCCccchHHhccCCCCcEEEEEEEEEe
Q psy8087 503 KIKDGEKYRDKRVTIFGWVHRL---RRQ----G-KGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEK 574 (658)
Q Consensus 503 ~i~~~~~~~g~~V~v~GwI~~~---R~~----G-kkl~Fi~Lrd~~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~ 574 (658)
+|+++.. -...|+|.|+|.++ |.. | .++..+.|.|++|.|.+++=.+ .+..|..||+|.++|--.+
T Consensus 4 kI~dL~p-g~~~v~i~~~V~~~~~~r~~~~~~g~~~v~~~~i~DeTG~i~~~~W~~-----~~~~l~~Gdvv~i~na~v~ 77 (115)
T d1o7ia_ 4 KVGNLKP-NMESVNVTVRVLEASEARQIQTKNGVRTISEAIVGDETGRVKLTLWGK-----HAGSIKEGQVVKIENAWTT 77 (115)
T ss_dssp CGGGCCT-TCSSEEEEEEEEEECCCEEECCTTCCEEEEEEEEEETTEEEEEEEEGG-----GTTCCCTTCEEEEEEEEEE
T ss_pred cHHHCCC-CCCCEEEEEEEEECCCCceeecCCCCEEEEEEEEEcCCCeEEEEEecc-----ccccCCCCCEEEEeeEEEE
Confidence 4555433 22358999999886 331 2 2678899999999999888542 2346899999999855443
Q ss_pred cCCCCCCCCceEEEEEEEEEEecC
Q psy8087 575 VPEGKSAPGGHELKVDYWEVVGLA 598 (658)
Q Consensus 575 ~~~~~~~~g~~El~~~~i~vls~~ 598 (658)
.- .|.++|.+.+...+..+
T Consensus 78 ~~-----~g~~el~~~~~s~i~~~ 96 (115)
T d1o7ia_ 78 AF-----KGQVQLNAGSKTKIAEA 96 (115)
T ss_dssp EE-----TTEEEEEECTTCEEEEC
T ss_pred EE-----CCeEEEEECCCeEEEEC
Confidence 22 57899998664444443
|
| >d2pi2a1 b.40.4.3 (A:44-171) Replication protein A 32 KDa subunit (RPA32) fragment {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Single strand DNA-binding domain, SSB domain: Replication protein A 32 KDa subunit (RPA32) fragment species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.39 E-value=0.23 Score=42.39 Aligned_cols=66 Identities=11% Similarity=0.140 Sum_probs=48.1
Q ss_pred CCcEEEEeEEeecceecCCCeEEEEEEcCCe-EEEEEEecccch-hhhhhcCCCccEEEEEEEeEeCCC
Q psy8087 69 IITNINIPAIPGPPAIPGKGLMFVTLRDGSG-FIQCVLADILCQ-TEHALLLSTESSVQFRGRIEKVPE 135 (658)
Q Consensus 69 ~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~-~iQvv~~~~~~~-~~~~~~l~~es~V~v~G~l~~~p~ 135 (658)
.-..|++.|+|.++......+.| .|-|++| .|.|..-.+... ......+..|+.|.|.|.++.-.+
T Consensus 27 ~v~~V~iVG~V~~i~~~~t~~~y-~idDgTG~~i~v~~w~~~~~~~~~~~~i~~g~yVrV~G~lk~f~~ 94 (128)
T d2pi2a1 27 EISQVTIVGIIRHAEKAPTNIVY-KIDDMTAAPMDVRQWVDTDDTSSENTVVPPETYVKVAGHLRSFQN 94 (128)
T ss_dssp EESEEEEEEEEEEEEECSSEEEE-EEECSSSSCEEEEEECC-------CCCCCTTCEEEEEEEEEEETT
T ss_pred EEEEEEEEEEEEEEEecCCEEEE-EEECCCCCcEEEEEECCCCCCccccccccCCCEEEEEEEEEeeCC
Confidence 34679999999999988877666 9999999 488876533211 112246889999999999986543
|
| >d1nnxa_ b.40.10.1 (A:) Hypothetical protein YgiW {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Hypothetical protein YgiW family: Hypothetical protein YgiW domain: Hypothetical protein YgiW species: Escherichia coli [TaxId: 562]
Probab=89.36 E-value=0.28 Score=40.55 Aligned_cols=59 Identities=14% Similarity=0.184 Sum_probs=46.3
Q ss_pred cCCcEEEEeEEeecceecCCCeEEEEEEcCCeEEEEEEecccchhhhhhcCCCccEEEEEEEeEeC
Q psy8087 68 YIITNINIPAIPGPPAIPGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKV 133 (658)
Q Consensus 68 ~~~~~v~~~Grv~~~r~~gk~l~Fi~LrD~~~~iQvv~~~~~~~~~~~~~l~~es~V~v~G~l~~~ 133 (658)
..+..|+|.|.|.+..+.- .| .++|++|.|+|-++.+. |.-..+++++-|.+.|.+-+-
T Consensus 34 ~Ddt~V~L~G~Iv~~l~~d---~Y-~F~D~TG~I~VeId~~~---w~g~~v~p~~kV~i~GevDk~ 92 (106)
T d1nnxa_ 34 RDDTWVTLRGNIVERISDD---LY-VFKDASGTINVDIDHKR---WNGVTVTPKDTVEIQGEVDKD 92 (106)
T ss_dssp CSSEEEEEEEEEEEEEETT---EE-EEEETTEEEEEECCGGG---STTCCCCTTSCEEEEEEEEEE
T ss_pred cCCCeEEEEEEEEEEeCCc---eE-EEECCCCcEEEEEChhh---cCCcccCCCCEEEEEEEEcCC
Confidence 4567899999999866543 34 56999999999997654 333479999999999999753
|
| >d1v1qa_ b.40.4.3 (A:) Primosomal replication protein N, PriB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Single strand DNA-binding domain, SSB domain: Primosomal replication protein N, PriB species: Escherichia coli [TaxId: 562]
Probab=88.40 E-value=3.3 Score=33.92 Aligned_cols=84 Identities=15% Similarity=0.129 Sum_probs=52.9
Q ss_pred cEEEEEEEEEe---eec--CCCceEEEEEEe------CCE------EEEEEEcCCccchHHhccCCCCcEEEEEEEEEec
Q psy8087 513 KRVTIFGWVHR---LRR--QGKGLMFVTLRD------GSG------FIQCVLADILCQTEHALLLSTESSVQFRGRIEKV 575 (658)
Q Consensus 513 ~~V~v~GwI~~---~R~--~Gkkl~Fi~Lrd------~~~------~iQvv~~~~~~~~~~~~~L~~gs~V~V~G~v~~~ 575 (658)
..|.|.|+|.+ +|- .|..++-+.|-- .+. .+.|++-+.... .....|+.||.|.|+|.+...
T Consensus 7 N~v~L~G~l~~dpelr~T~~G~~v~~f~la~~~~~~e~~~~r~~~~~i~vv~~g~~Ae-~~~~~l~kG~~v~v~G~L~~~ 85 (111)
T d1v1qa_ 7 NRLVLSGTVCRAPLRKVSPSGIPHCQFVLEHRSVQEEAGFHRQAWCQMPVIVSGHENQ-AITHSITVGSRITVQGFISCH 85 (111)
T ss_dssp EEEEEEEEEEEEEEEEECTTCCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEESTGGG-GGGTTCCTTCEEEEEEEEEEE
T ss_pred EEEEEEEEecCCcceEECCCCCEEEEEEEEeccEEecccceEEEEEEEEEEEeCHHHH-HHHHHhcCCCEEEEEEEEEEe
Confidence 46788888875 353 444444444421 111 255555543221 234579999999999999875
Q ss_pred CCCCCCCCceEEEEEEEEEEecC
Q psy8087 576 PEGKSAPGGHELKVDYWEVVGLA 598 (658)
Q Consensus 576 ~~~~~~~g~~El~~~~i~vls~~ 598 (658)
. -+.+.+.+.|+++.++.|..-
T Consensus 86 ~-~~~~~~r~v~~a~~ie~l~s~ 107 (111)
T d1v1qa_ 86 K-AKNGLSKMVLHAEQIELIDSV 107 (111)
T ss_dssp C-TTTTSCEEEEEEEEEEETTSC
T ss_pred c-ccCCCCEEEEEEEEEEEecCC
Confidence 4 234456788999999988643
|
| >d1g5ha2 d.104.1.1 (A:41-330) The aaRS-like accessory subunit of mitochondrial polymerase gamma, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: The aaRS-like accessory subunit of mitochondrial polymerase gamma, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.88 E-value=0.29 Score=47.88 Aligned_cols=70 Identities=13% Similarity=0.066 Sum_probs=42.0
Q ss_pred Ccceeecc--CHHHHHH--Hhc-cc---C-CcEEEEeeeeecCCCC-CccC----cceeeeeeeEeecCCHHHHHHHHHH
Q psy8087 197 GEPAYLTQ--SSQLYLE--TCL-PA---L-GDVYCIAQSYRAENSR-TRRH----LAEYTHVEAECAFLTFDDLLDKLED 262 (658)
Q Consensus 197 ~~~~~L~~--Spqlylk--~li-~g---~-~rvfeI~~~FR~E~~~-~~rH----l~EFt~lE~e~a~~d~~~~m~~~e~ 262 (658)
+..+|||- +|-.+.. .+. .. + =++-|||+|||+|... +.+| .=||||+|++. |.+-++..+..+.
T Consensus 110 ~~~~yLRPetaqg~~~~fkn~~~~~~~~LPf~iaq~g~~fR~E~~~~~~~~gl~RvReF~q~E~~~-F~~pe~~~~~~~~ 188 (290)
T d1g5ha2 110 KTSGKLRATLLHGALEHYVNCLDLVNRKLPFGLAQIGVCFHPVSNSNQTPSSVTRVGEKTEASLVW-FTPTRTSSQWLDF 188 (290)
T ss_dssp HHSCEECSCSHHHHHHTHHHHHHHTTTBSCEEEEEEEEEEEEEC---------CEEEEEEEEEEEE-EECHHHHHHHHHH
T ss_pred cccceeccccchhHHHHHHHHHhhccCCCCcEEEEeccccccccccCCcccccceeeEeEeeeeEE-EeCCcchHHHHHH
Confidence 44578874 4444433 122 12 3 3699999999966321 1121 23999999987 6788887776666
Q ss_pred HHHHH
Q psy8087 263 LICDT 267 (658)
Q Consensus 263 li~~i 267 (658)
++...
T Consensus 189 ~~~~~ 193 (290)
T d1g5ha2 189 WLRHR 193 (290)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65544
|
| >d1gm5a2 b.40.4.9 (A:106-285) RecG "wedge" domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: RecG "wedge" domain domain: RecG "wedge" domain species: Thermotoga maritima [TaxId: 2336]
Probab=85.61 E-value=0.62 Score=41.75 Aligned_cols=65 Identities=11% Similarity=-0.004 Sum_probs=44.8
Q ss_pred cCCcEEEEeEEeeccee---cCCCeEEEEEEcCCeEEEEEEecccchhhhhhcCCCccEEEEEEEeEeC
Q psy8087 68 YIITNINIPAIPGPPAI---PGKGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRGRIEKV 133 (658)
Q Consensus 68 ~~~~~v~~~Grv~~~r~---~gk~l~Fi~LrD~~~~iQvv~~~~~~~~~~~~~l~~es~V~v~G~l~~~ 133 (658)
..|+.|+|.|+|.+.+. .++.+.-+.+.|++|.|.+++-....- ........|..|.|+|.+...
T Consensus 58 ~~g~~vti~g~V~~~~~~~~~~~~~~~~~v~D~~g~i~l~fFn~~~~-~~~~k~~~G~~v~v~Gkvk~~ 125 (180)
T d1gm5a2 58 LPGEKVTTQGKIVSVETKKFQNMNILTAVLSDGLVHVPLKWFNQDYL-QTYLKQLTGKEVFVTGTVKSN 125 (180)
T ss_dssp CSSCCCEEEECCCCCEEEECSSCEEEEEEECCSSCCEEEEECSCCTT-HHHHHTTCSSCEEEEEEECSC
T ss_pred CcceeeeeeeEEEeeccccccccceeEEEEEeccceEEEEEeCcHHH-HHHHhhhcCceEEEEEEEeec
Confidence 45678999999986532 233456688899999999987754211 111123479999999999754
|
| >d3ulla_ b.40.4.3 (A:) ssDNA-binding protein {Human (Homo sapiens), mitochondria [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Single strand DNA-binding domain, SSB domain: ssDNA-binding protein species: Human (Homo sapiens), mitochondria [TaxId: 9606]
Probab=83.62 E-value=3.6 Score=33.63 Aligned_cols=82 Identities=16% Similarity=0.196 Sum_probs=47.7
Q ss_pred EEEEEEEEEe---eec--CCCceEEEEEE-e-----C-------------CEEEEEEEcCCccchHHhccCCCCcEEEEE
Q psy8087 514 RVTIFGWVHR---LRR--QGKGLMFVTLR-D-----G-------------SGFIQCVLADILCQTEHALLLSTESSVQFR 569 (658)
Q Consensus 514 ~V~v~GwI~~---~R~--~Gkkl~Fi~Lr-d-----~-------------~~~iQvv~~~~~~~~~~~~~L~~gs~V~V~ 569 (658)
.|+|.|+|.+ +|. .|+.++-+.|- + . +.-+.|++-.........+.|+.||.|.|+
T Consensus 7 ~V~L~G~l~~dpe~r~t~~G~~v~~f~vAv~~~~~~~~~~~~~~g~~~~~t~w~~v~~~g~~~a~~~~~~l~KG~~V~V~ 86 (115)
T d3ulla_ 7 RVHLLGRVGQDPVLRQVEGKNPVTIFSLATNEMWRSGDSEVYQLGDVSQKTTWHRISVFRPGLRDVAYQYVKKGSRIYLE 86 (115)
T ss_dssp EEEEEEEECSCCEEECCTTSCCEEEEEEEEEEEECC---------CCEEEEEEEEEEECSTTHHHHHHHHCCTTCEEEEE
T ss_pred EEEEEEECCCCCEEEEeCCCCEEEEEEEEcccccccccccccccccceeeeeeeeeeeeecccchhhhhhccCCCEEEEE
Confidence 5888999975 553 45555544441 1 1 122555554432111112359999999999
Q ss_pred EEEEecC-CCC--CCCCceEEEEEEEEEE
Q psy8087 570 GRIEKVP-EGK--SAPGGHELKVDYWEVV 595 (658)
Q Consensus 570 G~v~~~~-~~~--~~~g~~El~~~~i~vl 595 (658)
|.+.... +.+ .+...+||.|+++++|
T Consensus 87 Grl~~~~~~dkdG~~r~~~~v~a~~i~~L 115 (115)
T d3ulla_ 87 GKIDYGEYMDKNNVRRQATTIIADNIIFL 115 (115)
T ss_dssp EEEECCCEESSSSEECCCEEEEEEEEECC
T ss_pred EEEeeeeEECCCCCEEEEEEEEEEEEEeC
Confidence 9997643 111 1124589999998764
|
| >d1atia2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Glycyl-tRNA synthetase (GlyRS) species: Thermus thermophilus [TaxId: 274]
Probab=83.20 E-value=0.83 Score=46.19 Aligned_cols=34 Identities=24% Similarity=0.447 Sum_probs=26.0
Q ss_pred EEEEeeeeecCCCCCccC----cceeeeeeeEeecCCHHHH
Q psy8087 220 VYCIAQSYRAENSRTRRH----LAEYTHVEAECAFLTFDDL 256 (658)
Q Consensus 220 vfeI~~~FR~E~~~~~rH----l~EFt~lE~e~a~~d~~~~ 256 (658)
+.|||++||||=+ . |+ .-||||+|+|. |.+-.+-
T Consensus 212 iAQIGk~FRNEIs-P-r~~l~R~REF~q~EiE~-Fv~P~~~ 249 (394)
T d1atia2 212 IAQIGKAFRNEIT-P-RNFIFRVREFEQMEIEY-FVRPGED 249 (394)
T ss_dssp EEEEEEEEBCCSS-C-CTGGGSCSEEEEEEEEE-EECGGGH
T ss_pred eeeeccccccccC-c-ccCCcccccceeeeeEE-EEeCCcc
Confidence 9999999999943 3 43 56999999988 5555443
|
| >d1jmca1 b.40.4.3 (A:183-298) Replication protein A 70 KDa subunit (RPA70) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Single strand DNA-binding domain, SSB domain: Replication protein A 70 KDa subunit (RPA70) species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.37 E-value=0.92 Score=37.68 Aligned_cols=61 Identities=18% Similarity=0.126 Sum_probs=43.7
Q ss_pred cEEEEeEEeecc------eec-C-CCeEEEEEEcCCeEEEEEEecccchhhhhhcCCCccEEEEEE-EeEe
Q psy8087 71 TNINIPAIPGPP------AIP-G-KGLMFVTLRDGSGFIQCVLADILCQTEHALLLSTESSVQFRG-RIEK 132 (658)
Q Consensus 71 ~~v~~~Grv~~~------r~~-g-k~l~Fi~LrD~~~~iQvv~~~~~~~~~~~~~l~~es~V~v~G-~l~~ 132 (658)
..++|.|||.++ +.. | +++.-++|.|.+|.|++.+-++....|. ..|..|+++.++| .|++
T Consensus 13 ~~~~I~~RV~~k~~~r~f~~~~~~g~v~~~~l~De~G~I~~t~~~~~~~~f~-~~l~~G~vy~i~~~~V~~ 82 (116)
T d1jmca1 13 SKWTICARVTNKSQIRTWSNSRGEGKLFSLELVDESGEIRATAFNEQVDKFF-PLIEVNKVYYFSKGTLKI 82 (116)
T ss_dssp CCCEEEEEEEEECCCEEEECSSCEEEEEEEEEECSSCEEEEEEEHHHHHHHG-GGCCTTCEEEEECCEEEE
T ss_pred CCEEEEEEEEEeccceEEECCCCCceEEEEEEEcCCCCEEEEEchhhhhhhH-hhcccCCEEEEcceEEEE
Confidence 458899999643 222 1 1467889999999999999876544443 3599999999976 4544
|