Psyllid ID: psy8088

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280--
MSDDDRMSLTTAVSDEEDVESAHISPYRAKQTGTAAASFNCTGIRYLPGGVASGFNHVDINAPGEKKLYQIKGKKNIRVRQVALSVGSMNKGDCFALDTGREVLVYVGSKAARTERLKAISVANQIRDQDHNGRATVSIIDENSSPVEVTRFFTELGSGSNNQVADVPYGGDDAEFETKQDKAVKLYKISDASGNVKSELIEQIPLAQKSLNQGDTFILDTVTSGIYVWIGKDSTTAEKVEGLKRGQAFLTNNNYPAWTKTGEIKTSLEVWAEEKEEALVHQ
ccHHHHHHHHHHHHHccccccccEEEEEcccccHHHHHcccccEEEccccccccccccccccccccEEEEEEEEcEEEEEEEEccccccccccEEEEEcccEEEEEEcccccHHHHHHHHHHHHHHHHccccccEEEEEEccccccHHHHHHHHHHcccccccccccccccccHHHHHHHccccEEEEEEcccccEEEEEEEEccccccccccccEEEEEccccEEEEEEEccccHHHHHHHHHHHHHHHHHcccccccEEEEEEccEEEEccccccccccc
ccHHHHHHHHHHHHHHccccEEEEEEEcccccccHHHHHcccccEEEccccccccccccccccEEEEEEEEEcccccEEEEEcccHHHcEcccEEEEEEccEEEEEEcccccHHHHHHHHHHHHHHHccccccccEEEEEEcccccHHHHHHHHHHcccccccccccccccccHHHccccccccEEEEEEccccEEEEEEEEcccccHHHcccccEEEEEccccEEEEEEcccccHHHHHHHHHHHHHHHHHccccccccEEEEEEEEEEEccccccccccc
msdddrmslttavsdeedvesahispyrakqtgtaaasfnctgirylpggvasgfnhvdinapgekklyqikgkkniRVRQVALSvgsmnkgdcfaldtGREVLVYVGSKAARTERLKAISVANQirdqdhngratvsiidensspveVTRFFTelgsgsnnqvadvpyggddaefeTKQDKAVKLYKIsdasgnvkSELIEQIPLAQKSLNQGDTFILDTVTSGIYVWIGKDSTTAEKVEGLKRgqafltnnnypawtktgeikTSLEVWAEEKEEALVHQ
msdddrmslttavsdeedvesahispyrakqtgtAAASFNCTGIRYLPGGVASGFNHVDINAPGEKKlyqikgkkniRVRQVALsvgsmnkgdcfaldtGREVLVYVgskaarterLKAIsvanqirdqdhngratvsiidensspVEVTRFFtelgsgsnnqvADVPYGGDDAEFETKQDKAVKLYKISDASGNVKSELIEQIPLAQKSLNQGDTFILDTVTSGIYVWIGKDSTTAEKVEGLKRgqafltnnnypawtktgeiKTSLEVWAEEKEEALVHQ
MSDDDRMSLTTAVSDEEDVESAHISPYRAKQTGTAAASFNCTGIRYLPGGVASGFNHVDINAPGEKKLYQIKGKKNIRVRQVALSVGSMNKGDCFALDTGREVLVYVGSKAARTERLKAISVANQIRDQDHNGRATVSIIDENSSPVEVTRFFTELGSGSNNQVADVPYGGDDAEFETKQDKAVKLYKISDASGNVKSELIEQIPLAQKSLNQGDTFILDTVTSGIYVWIGKDSTTAEKVEGLKRGQAFLTNNNYPAWTKTGEIKTSLEVWAEEKEEALVHQ
********************************GTAAASFNCTGIRYLPGGVASGFNHVDINAPGEKKLYQIKGKKNIRVRQVALSVGSMNKGDCFALDTGREVLVYVGSKAARTERLKAISVANQI**********VSII*******EVTRFFTEL***************************VKLYKISD****VKSELIEQIPLAQKSLNQGDTFILDTVTSGIYVWIGKDSTTAEKVEGLKRGQAFLTNNNYPAWTKTGEIKTSLEVWA**********
*SDDDRMSLTTAVSDEEDVES**************AASFNCTGIRYLPGGVASGFNHVDINAPGEKKLYQIKGKKNIRVRQVALSVGSMNKGDCFALDTGREVLVYVGSKAARTERLKAISVANQIRDQDHNGRATVSIIDENSSPVEVTRFFTELGSGSNNQ******GGDDAEFETKQDKAVKLYKISDASGNVKSELIEQIPLAQKSLNQGDTFILDTVTSGIYVWIGKDSTTAEKVEGLKRGQAFLTNNNYPAWTKTGEIKTSLEVWAEEKE**LVH*
************************SPYRAKQTGTAAASFNCTGIRYLPGGVASGFNHVDINAPGEKKLYQIKGKKNIRVRQVALSVGSMNKGDCFALDTGREVLVYVGSKAARTERLKAISVANQIRDQDHNGRATVSIIDENSSPVEVTRFFTELGSGSNNQVADVPYGGDDAEFETKQDKAVKLYKISDASGNVKSELIEQIPLAQKSLNQGDTFILDTVTSGIYVWIGKDSTTAEKVEGLKRGQAFLTNNNYPAWTKTGEIKTSLEVWAE*********
MSDDDRMSLTTAVSDEEDVESAHISPYRAKQTGTAAASFNCTGIRYLPGGVASGFNHVDINAPGEKKLYQIKGKKNIRVRQVALSVGSMNKGDCFALDTGREVLVYVGSKAARTERLKAISVANQIRDQDHNGRATVSIIDENSSPVEVTRFFTELGSGS***V*******DD****TKQDKAVKLYKISDASGNVKSELIEQIPLAQKSLNQGDTFILDTVTSGIYVWIGKDSTTAEKVEGLKRGQAFLTNNNYPAWTKTGEIKTSLEVWAEE********
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSDDDRMSLTTAVSDEEDVESAHISPYRAKQTGTAAASFNCTGIRYLPGGVASGFNHVDINAPGEKKLYQIKGKKNIRVRQVALSVGSMNKGDCFALDTGREVLVYVGSKAARTERLKAISVANQIRDQDHNGRATVSIIDENSSPVEVTRFFTELGSGSNNQVADVPYGGDDAEFETKQDKAVKLYKISDASGNVKSELIEQIPLAQKSLNQGDTFILDTVTSGIYVWIGKDSTTAEKVEGLKRGQAFLTNNNYPAWTKTGEIKTSLEVWAEEKEEALVHQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query282 2.2.26 [Sep-21-2011]
Q07171 798 Gelsolin OS=Drosophila me yes N/A 0.801 0.283 0.546 6e-66
Q27319 754 Gelsolin, cytoplasmic OS= N/A N/A 0.829 0.310 0.424 2e-51
Q5ZIV9 717 Adseverin OS=Gallus gallu yes N/A 0.804 0.316 0.374 2e-35
O93510 778 Gelsolin OS=Gallus gallus no N/A 0.801 0.290 0.368 2e-34
Q28046 715 Adseverin OS=Bos taurus G yes N/A 0.723 0.285 0.385 2e-34
P20305 772 Gelsolin (Fragment) OS=Su yes N/A 0.748 0.273 0.378 4e-34
O75366 819 Advillin OS=Homo sapiens yes N/A 0.744 0.256 0.380 5e-33
P06396 782 Gelsolin OS=Homo sapiens no N/A 0.748 0.269 0.378 6e-33
Q60604 715 Adseverin OS=Mus musculus yes N/A 0.723 0.285 0.376 8e-33
Q21253 475 Gelsolin-like protein 1 O yes N/A 0.812 0.482 0.348 9e-33
>sp|Q07171|GELS_DROME Gelsolin OS=Drosophila melanogaster GN=Gel PE=1 SV=2 Back     alignment and function desciption
 Score =  251 bits (640), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 124/227 (54%), Positives = 156/227 (68%), Gaps = 1/227 (0%)

Query: 38  SFNCTGIRYLPGGVASGFNHVDINAPGEKKLYQIKGKKNIRVRQVALSVGSMNKGDCFAL 97
           S+   GIRY  GGV +GF HV+ NA GE +L+Q+KGK+N+RVRQV LSV SMN GDCF L
Sbjct: 164 SYFKNGIRYEQGGVGTGFKHVETNAQGETRLFQVKGKRNVRVRQVNLSVSSMNTGDCFIL 223

Query: 98  DTGREVLVYVGSKAARTERLKAISVANQIRDQDHNGRATVSIIDENSSPVEVTRFFTELG 157
           D G ++ VYVGS+A R E+LKAIS ANQIRDQDHNGRA V I+D+ S+  +   FF  LG
Sbjct: 224 DAGSDIYVYVGSQAKRVEKLKAISAANQIRDQDHNGRARVQIVDDFSTDADKQHFFDVLG 283

Query: 158 SGSNNQVADVPYGGDDAEFETKQDKAVKLYKISDASGNVKSELIEQIPLAQKSLNQGDTF 217
           SGS +QV D     +D+ FE     AV LYK+SDASG +K ++I Q PL Q  L+  + F
Sbjct: 284 SGSADQVPDESTADEDSAFERTDAAAVSLYKVSDASGKLKVDIIGQKPLTQAMLDTRECF 343

Query: 218 ILDTVTSGIYVWIGKDSTTAEKVEGLKRGQAFLTNNNYPAWTKTGEI 264
           ILDT  SGI+VW+GK +T  EK + + + Q FL    YPAWT+   I
Sbjct: 344 ILDT-GSGIFVWVGKGATQKEKTDAMAKAQEFLRTKKYPAWTQIHRI 389
Calcium-regulated, actin-modulating protein that binds to the plus (or barbed) ends of actin monomers or filaments, preventing monomer exchange (end-blocking or capping). It can promote the assembly of monomers into filaments (nucleation) as well as sever filaments already formed.
Drosophila melanogaster (taxid: 7227)
>sp|Q27319|GELS_HOMAM Gelsolin, cytoplasmic OS=Homarus americanus PE=1 SV=1 Back     alignment and function description
>sp|Q5ZIV9|ADSV_CHICK Adseverin OS=Gallus gallus GN=SCIN PE=2 SV=2 Back     alignment and function description
>sp|O93510|GELS_CHICK Gelsolin OS=Gallus gallus GN=GSN PE=2 SV=1 Back     alignment and function description
>sp|Q28046|ADSV_BOVIN Adseverin OS=Bos taurus GN=SCIN PE=1 SV=1 Back     alignment and function description
>sp|P20305|GELS_PIG Gelsolin (Fragment) OS=Sus scrofa GN=GSN PE=1 SV=1 Back     alignment and function description
>sp|O75366|AVIL_HUMAN Advillin OS=Homo sapiens GN=AVIL PE=1 SV=3 Back     alignment and function description
>sp|P06396|GELS_HUMAN Gelsolin OS=Homo sapiens GN=GSN PE=1 SV=1 Back     alignment and function description
>sp|Q60604|ADSV_MOUSE Adseverin OS=Mus musculus GN=Scin PE=1 SV=3 Back     alignment and function description
>sp|Q21253|GELS1_CAEEL Gelsolin-like protein 1 OS=Caenorhabditis elegans GN=gsnl-1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query282
193716193 403 PREDICTED: gelsolin-like isoform 1 [Acyr 0.829 0.580 0.597 2e-74
91075932 545 PREDICTED: similar to GA10732-PA [Tribol 0.801 0.414 0.568 3e-68
270014632 1430 hypothetical protein TcasGA2_TC004676 [T 0.783 0.154 0.576 3e-68
312285590279 hypothetical protein [Bactrocera oleae] 0.801 0.810 0.563 1e-67
328721595 384 PREDICTED: gelsolin-like isoform 2 [Acyr 0.734 0.539 0.614 3e-67
195053828 802 GH19024 [Drosophila grimshawi] gi|193895 0.783 0.275 0.567 2e-65
195449437 792 GK22516 [Drosophila willistoni] gi|19416 0.783 0.279 0.554 3e-65
195113939 802 GI10844 [Drosophila mojavensis] gi|19391 0.801 0.281 0.550 3e-65
195568113 796 gelsolin [Drosophila simulans] gi|194197 0.783 0.277 0.567 4e-65
195399760 802 GJ14452 [Drosophila virilis] gi|19414204 0.783 0.275 0.558 6e-65
>gi|193716193|ref|XP_001949775.1| PREDICTED: gelsolin-like isoform 1 [Acyrthosiphon pisum] Back     alignment and taxonomy information
 Score =  285 bits (728), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 144/241 (59%), Positives = 173/241 (71%), Gaps = 7/241 (2%)

Query: 25  SPYRAKQT----GTAAASFNCTGIRYLPGGVASGFNHVDINAPGEKKLYQIKGKKNIRVR 80
           SP + K+T      A  S     IRY+PGG+ASGF+H +INA GEKKLYQ+KGKKNIRV+
Sbjct: 136 SPVQHKETQDHESQAFLSLFTPSIRYMPGGIASGFHHAEINAGGEKKLYQVKGKKNIRVK 195

Query: 81  QVALSVGSMNKGDCFALDTGREVLVYVGSKAARTERLKAISVANQIRDQDHNGRATVSII 140
           Q+   V SMN+GDCF LDTG+E+ VYVG +A  TERLKAI+VANQ+RDQDH+GRA V+I+
Sbjct: 196 QIEPKVTSMNQGDCFILDTGKEIFVYVGPQAKGTERLKAINVANQVRDQDHSGRAKVNIV 255

Query: 141 DENSSPVEVTRFFTELGSGSNNQVADVPYGGDDAEFETKQDKAVKLYKISDAS-GNVKSE 199
           D +S+P E  +FF ELGSGS  QV       DD EFE K+  A  LYKISD+  G + SE
Sbjct: 256 DGSSTPDEFEKFFKELGSGSAKQVPAAI--DDDQEFEKKETAAPVLYKISDSQGGKIVSE 313

Query: 200 LIEQIPLAQKSLNQGDTFILDTVTSGIYVWIGKDSTTAEKVEGLKRGQAFLTNNNYPAWT 259
            I+Q PL Q  L   D FILDTV+SGIYVW+GK  TT EKVE LKR Q F+  NNYPAWT
Sbjct: 314 KIDQKPLVQSHLKTDDCFILDTVSSGIYVWVGKKGTTQEKVESLKRAQVFIKENNYPAWT 373

Query: 260 K 260
           +
Sbjct: 374 R 374

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|91075932|ref|XP_967392.1| PREDICTED: similar to GA10732-PA [Tribolium castaneum] Back     alignment and taxonomy information
>gi|270014632|gb|EFA11080.1| hypothetical protein TcasGA2_TC004676 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|312285590|gb|ADQ64485.1| hypothetical protein [Bactrocera oleae] Back     alignment and taxonomy information
>gi|328721595|ref|XP_003247351.1| PREDICTED: gelsolin-like isoform 2 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|195053828|ref|XP_001993828.1| GH19024 [Drosophila grimshawi] gi|193895698|gb|EDV94564.1| GH19024 [Drosophila grimshawi] Back     alignment and taxonomy information
>gi|195449437|ref|XP_002072074.1| GK22516 [Drosophila willistoni] gi|194168159|gb|EDW83060.1| GK22516 [Drosophila willistoni] Back     alignment and taxonomy information
>gi|195113939|ref|XP_002001525.1| GI10844 [Drosophila mojavensis] gi|193918119|gb|EDW16986.1| GI10844 [Drosophila mojavensis] Back     alignment and taxonomy information
>gi|195568113|ref|XP_002102062.1| gelsolin [Drosophila simulans] gi|194197989|gb|EDX11565.1| gelsolin [Drosophila simulans] Back     alignment and taxonomy information
>gi|195399760|ref|XP_002058487.1| GJ14452 [Drosophila virilis] gi|194142047|gb|EDW58455.1| GJ14452 [Drosophila virilis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query282
FB|FBgn0010225 798 Gel "Gelsolin" [Drosophila mel 0.801 0.283 0.546 2.7e-61
ZFIN|ZDB-GENE-040426-2068 720 scinlb "scinderin like b" [Dan 0.804 0.315 0.382 4.6e-37
ZFIN|ZDB-GENE-030131-2005 720 scinla "scinderin like a" [Dan 0.882 0.345 0.365 4.4e-36
ZFIN|ZDB-GENE-030131-9653 758 gsna "gelsolin a" [Danio rerio 0.744 0.277 0.393 3.1e-35
ZFIN|ZDB-GENE-060531-6350 si:ch211-114c12.4 "si:ch211-11 0.801 0.645 0.376 5.1e-35
UNIPROTKB|Q5ZIV9 717 SCIN "Adseverin" [Gallus gallu 0.815 0.320 0.373 1.5e-34
UNIPROTKB|F1NCA8 752 SCIN "Adseverin" [Gallus gallu 0.815 0.305 0.373 1.7e-34
UNIPROTKB|F1NKF3 778 GSN "Uncharacterized protein" 0.918 0.332 0.346 1.1e-33
UNIPROTKB|O93510 778 GSN "Gelsolin" [Gallus gallus 0.918 0.332 0.346 1.4e-33
UNIPROTKB|P20305 772 GSN "Gelsolin" [Sus scrofa (ta 0.748 0.273 0.378 3.7e-33
FB|FBgn0010225 Gel "Gelsolin" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 627 (225.8 bits), Expect = 2.7e-61, P = 2.7e-61
 Identities = 124/227 (54%), Positives = 156/227 (68%)

Query:    38 SFNCTGIRYLPGGVASGFNHVDINAPGEKKLYQIKGKKNIRVRQVALSVGSMNKGDCFAL 97
             S+   GIRY  GGV +GF HV+ NA GE +L+Q+KGK+N+RVRQV LSV SMN GDCF L
Sbjct:   164 SYFKNGIRYEQGGVGTGFKHVETNAQGETRLFQVKGKRNVRVRQVNLSVSSMNTGDCFIL 223

Query:    98 DTGREVLVYVGSKAARTERLKAISVANQIRDQDHNGRATVSIIDENSSPVEVTRFFTELG 157
             D G ++ VYVGS+A R E+LKAIS ANQIRDQDHNGRA V I+D+ S+  +   FF  LG
Sbjct:   224 DAGSDIYVYVGSQAKRVEKLKAISAANQIRDQDHNGRARVQIVDDFSTDADKQHFFDVLG 283

Query:   158 SGSNNQVADVPYGGDDAEFETKQDKAVKLYKISDASGNVKSELIEQIPLAQKSLNQGDTF 217
             SGS +QV D     +D+ FE     AV LYK+SDASG +K ++I Q PL Q  L+  + F
Sbjct:   284 SGSADQVPDESTADEDSAFERTDAAAVSLYKVSDASGKLKVDIIGQKPLTQAMLDTRECF 343

Query:   218 ILDTVTSGIYVWIGKDSTTAEKVEGLKRGQAFLTNNNYPAWTKTGEI 264
             ILDT  SGI+VW+GK +T  EK + + + Q FL    YPAWT+   I
Sbjct:   344 ILDT-GSGIFVWVGKGATQKEKTDAMAKAQEFLRTKKYPAWTQIHRI 389
GO:0005884 "actin filament" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
GO:0005576 "extracellular region" evidence=IDA
GO:0003779 "actin binding" evidence=ISS
GO:0006911 "phagocytosis, engulfment" evidence=IMP
ZFIN|ZDB-GENE-040426-2068 scinlb "scinderin like b" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-2005 scinla "scinderin like a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-9653 gsna "gelsolin a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060531-6 si:ch211-114c12.4 "si:ch211-114c12.4" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZIV9 SCIN "Adseverin" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1NCA8 SCIN "Adseverin" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1NKF3 GSN "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|O93510 GSN "Gelsolin" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|P20305 GSN "Gelsolin" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q07171GELS_DROMENo assigned EC number0.54620.80140.2832yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query282
cd1128992 cd11289, gelsolin_S2_like, Gelsolin sub-domain 2-l 5e-34
cd1129298 cd11292, gelsolin_S3_like, Gelsolin sub-domain 3-l 4e-21
smart0026290 smart00262, GEL, Gelsolin homology domain 1e-20
smart0026290 smart00262, GEL, Gelsolin homology domain 2e-11
pfam0062676 pfam00626, Gelsolin, Gelsolin repeat 2e-10
cd1128088 cd11280, gelsolin_like, Tandemly repeated domains 6e-10
cd1128892 cd11288, gelsolin_S5_like, Gelsolin sub-domain 5-l 3e-09
cd1129199 cd11291, gelsolin_S6_like, Gelsolin sub-domain 6-l 1e-08
cd1129298 cd11292, gelsolin_S3_like, Gelsolin sub-domain 3-l 5e-08
pfam0062676 pfam00626, Gelsolin, Gelsolin repeat 3e-06
cd1128992 cd11289, gelsolin_S2_like, Gelsolin sub-domain 2-l 1e-05
cd1128088 cd11280, gelsolin_like, Tandemly repeated domains 2e-05
cd1129199 cd11291, gelsolin_S6_like, Gelsolin sub-domain 6-l 8e-05
cd1128892 cd11288, gelsolin_S5_like, Gelsolin sub-domain 5-l 4e-04
>gnl|CDD|200445 cd11289, gelsolin_S2_like, Gelsolin sub-domain 2-like domain found in gelsolin, severin, villin, and related proteins Back     alignment and domain information 
 Score =  118 bits (298), Expect = 5e-34
 Identities = 38/93 (40%), Positives = 57/93 (61%), Gaps = 1/93 (1%)

Query: 65  EKKLYQIKGKKNIRVRQVALSVGSMNKGDCFALDTGREVLVYVGSKAARTERLKAISVAN 124
           + +L  +KG++N+R R+V LS  S+N GD F LD G  +  + GSK+ R E+ KA+ +A 
Sbjct: 1   KPRLLHVKGRRNVRAREVELSWSSLNSGDVFILDLGSTIYQWNGSKSNRFEKAKAMQLAQ 60

Query: 125 QIRDQDHNGRATVSIIDENSSPVEVTRFFTELG 157
            IRD+   GRA V ++DE  +  E   F+  LG
Sbjct: 61  GIRDERRLGRAKVIVLDEGDTN-ESPEFWKVLG 92

Gelsolin repeats occur in gelsolin, severin, villin, advillin, villidin, supervillin, flightless, quail, fragmin, and other proteins, usually in several copies. They co-occur with villin headpiece domains, leucine-rich repeats, and several other domains. These gelsolin-related actin binding proteins (GRABPs) play regulatory roles in the assembly and disassembly of actin filaments; they are involved in F-actin capping, uncapping, severing, or the nucleation of actin filaments. Severing of actin filaments is Ca2+ dependent. Villins are also linked to generating bundles of F-actin with uniform filament polarity, which is most likely mediated by their extra villin headpiece domain. Many family members have also adopted functions in the nucleus, including the regulation of transcription. Supervillin, gelsolin, and flightless I are involved in intracellular signaling via nuclear hormone receptors. The gelsolin-like domain is distantly related to the actin depolymerizing domains found in cofilin and similar proteins. Length = 92
>gnl|CDD|200448 cd11292, gelsolin_S3_like, Gelsolin sub-domain 3-like domain found in gelsolin, severin, villin, and related proteins Back     alignment and domain information
>gnl|CDD|214590 smart00262, GEL, Gelsolin homology domain Back     alignment and domain information
>gnl|CDD|214590 smart00262, GEL, Gelsolin homology domain Back     alignment and domain information
>gnl|CDD|201354 pfam00626, Gelsolin, Gelsolin repeat Back     alignment and domain information
>gnl|CDD|200436 cd11280, gelsolin_like, Tandemly repeated domains found in gelsolin, severin, villin, and related proteins Back     alignment and domain information
>gnl|CDD|200444 cd11288, gelsolin_S5_like, Gelsolin sub-domain 5-like domain found in gelsolin, severin, villin, and related proteins Back     alignment and domain information
>gnl|CDD|200447 cd11291, gelsolin_S6_like, Gelsolin sub-domain 6-like domain found in gelsolin, severin, villin, and related proteins Back     alignment and domain information
>gnl|CDD|200448 cd11292, gelsolin_S3_like, Gelsolin sub-domain 3-like domain found in gelsolin, severin, villin, and related proteins Back     alignment and domain information
>gnl|CDD|201354 pfam00626, Gelsolin, Gelsolin repeat Back     alignment and domain information
>gnl|CDD|200445 cd11289, gelsolin_S2_like, Gelsolin sub-domain 2-like domain found in gelsolin, severin, villin, and related proteins Back     alignment and domain information
>gnl|CDD|200436 cd11280, gelsolin_like, Tandemly repeated domains found in gelsolin, severin, villin, and related proteins Back     alignment and domain information
>gnl|CDD|200447 cd11291, gelsolin_S6_like, Gelsolin sub-domain 6-like domain found in gelsolin, severin, villin, and related proteins Back     alignment and domain information
>gnl|CDD|200444 cd11288, gelsolin_S5_like, Gelsolin sub-domain 5-like domain found in gelsolin, severin, villin, and related proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 282
KOG0443|consensus 827 100.0
KOG0443|consensus 827 100.0
KOG0444|consensus 1255 100.0
KOG0445|consensus 919 99.96
KOG0445|consensus919 99.95
KOG0444|consensus1255 99.86
smart0026290 GEL Gelsolin homology domain. Gelsolin/severin/vil 99.83
smart0026290 GEL Gelsolin homology domain. Gelsolin/severin/vil 99.79
PF0062676 Gelsolin: Gelsolin repeat; InterPro: IPR007123 Gel 99.65
PF0062676 Gelsolin: Gelsolin repeat; InterPro: IPR007123 Gel 99.62
KOG1984|consensus1007 96.25
COG5028861 Vesicle coat complex COPII, subunit SEC24/subunit 96.17
PTZ003951560 Sec24-related protein; Provisional 96.15
COG5028861 Vesicle coat complex COPII, subunit SEC24/subunit 94.87
KOG1984|consensus1007 94.72
KOG1985|consensus887 92.6
PTZ003951560 Sec24-related protein; Provisional 92.58
PLN00162761 transport protein sec23; Provisional 89.59
PLN00162761 transport protein sec23; Provisional 81.06
KOG1985|consensus887 80.84
>KOG0443|consensus Back     alignment and domain information 
Probab=100.00  E-value=6.6e-67  Score=497.12  Aligned_cols=268  Identities=30%  Similarity=0.496  Sum_probs=241.8

Q ss_pred             hhhchheeeecccccccCCCcceeeeecC--hhhHHhhCCCCeEEecCccCCCCeeecCCCCCcceEEEEEeCccEEEEE
Q psy8088           4 DDRMSLTTAVSDEEDVESAHISPYRAKQT--GTAAASFNCTGIRYLPGGVASGFNHVDINAPGEKKLYQIKGKKNIRVRQ   81 (282)
Q Consensus         4 ~~~~~~~~~~~d~~~~~~~~~~q~Re~Qg--s~~Fl~~F~~~i~~~~Gg~~s~f~~~~~~~~~~~rL~~v~G~~~~~~~e   81 (282)
                      ...+|..|++||+  .|||.||||||+||  |+.||+|||.||+|.+||++|||+||+++.+ ..|||||||+++++++|
T Consensus        78 ~g~aAiktveLD~--~Lgg~~vQhREVQg~ES~~FLsYFK~gi~~~~GGv~Sg~khv~~~~~-~~rL~~~KGkr~vr~~e  154 (827)
T KOG0443|consen   78 AGAAAIKTVELDD--YLGGRAVQHREVQGHESEKFLSYFKPGIIYQEGGVASGFKHVETEEY-QVRLFHCKGKRNVRVKE  154 (827)
T ss_pred             hcceeeeeEehhh--hhCCCcceeehhcccchHHHHhhccCCceecccccccCcccccccce-eeEEEEEccceeEEEEE
Confidence            4567799999999  89999999999999  9999999999999999999999999999874 45999999999999999


Q ss_pred             eecccccCCCCCeEEEecCCeEEEEeCCCCCHHHHHHHHHHHHHhccccCCCcceEEEecCC--CCCcchhHHHHHhCCC
Q psy8088          82 VALSVGSMNKGDCFALDTGREVLVYVGSKAARTERLKAISVANQIRDQDHNGRATVSIIDEN--SSPVEVTRFFTELGSG  159 (282)
Q Consensus        82 V~~~~~sL~s~d~fIld~~~~iyvW~G~~ss~~er~~A~~~a~~l~~~e~~g~~~v~~v~e~--~~g~E~~~F~~~lg~g  159 (282)
                      ||++|+|||++||||||+++.||+|+|++||..||++|+++|+.|++.+|.|+|+|.+||++  ....+..+||..++ |
T Consensus       155 V~~~~sS~N~gDvFILD~g~~i~qw~G~~Ss~~ER~KAl~~~~~IrD~e~~Gr~~V~vvdd~~~~~d~d~~~~~~~~~-g  233 (827)
T KOG0443|consen  155 VPFSWSSLNHGDVFILDTGSKIYQWNGPNSSIQERAKALEVVQYIRDNERDGRCEVAVVDDGKEAADSDLGEFWGFVL-G  233 (827)
T ss_pred             EEeehhhcCCCcEEEEEcCCceEEEcCCcccHHHHHHHHHHHHHhhccCCCCceeEEEecCcccccCchHHHHHHhhc-C
Confidence            99999999999999999999999999999999999999999999999999999999999863  23445678999988 4


Q ss_pred             CCCCCCCCCCCCCChhhhccccccceEEEEECCCCCeEEEEeecccCCccccCCCCEEEEecCCCeEEEEecCCCCHHHH
Q psy8088         160 SNNQVADVPYGGDDAEFETKQDKAVKLYKISDASGNVKSELIEQIPLAQKSLNQGDTFILDTVTSGIYVWIGKDSTTAEK  239 (282)
Q Consensus       160 ~~~~~~~~~~~~~d~~~~~~~~~~~rLy~vs~~~g~~~~~ev~~~~~~q~~L~s~~vfILD~g~~~iyvW~G~~as~~er  239 (282)
                      ..+.++.....++   .++.....++||+|++++|.+.+.+++.+||+|++|++++|||||||+.+||||+|+.|+..||
T Consensus       234 ~~~~~~~~~~~~~---~~~~~s~~~kLYkVsd~~g~l~v~~va~~~l~qdlLd~~dCYILD~g~~~IfVW~Gr~as~~ER  310 (827)
T KOG0443|consen  234 FAPALPKKSPDDD---DEQANSAAAKLYKVSDASGGLKVPVVADGPLTKDLLDTEDCYILDCGGGEIFVWKGRQASLDER  310 (827)
T ss_pred             cCccCCCCCcchh---hhhhhccccEEEEEeccCCCccccccccchhhHHhhccCCeEEEecCCceEEEEeCCCCCHHHH
Confidence            4432333322222   2444566899999999999999999998899999999999999999967999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCCcceEEEecCCCCChhhhhhhh
Q psy8088         240 VEGLKRGQAFLTNNNYPAWTKTGEIKTSLEVWAEEKEEA  278 (282)
Q Consensus       240 ~~a~~~A~~~~~~~~~~~~~~i~~v~eG~Ep~~F~~~~~  278 (282)
                      +.||..|.+||++++||.+|.|++|.||.||+.||..|.
T Consensus       311 kaAm~~AeeFlk~k~yP~~TqV~rv~EG~Esa~FKq~F~  349 (827)
T KOG0443|consen  311 KAAMSSAEEFLKKKKYPPNTQVVRVLEGAESAPFKQLFD  349 (827)
T ss_pred             HHHHHHHHHHHHhccCCCCceEEEecCCCcchhHHHHHh
Confidence            999999999999999999999999999999999999875

>KOG0443|consensus Back     alignment and domain information
>KOG0444|consensus Back     alignment and domain information
>KOG0445|consensus Back     alignment and domain information
>KOG0445|consensus Back     alignment and domain information
>KOG0444|consensus Back     alignment and domain information
>smart00262 GEL Gelsolin homology domain Back     alignment and domain information
>smart00262 GEL Gelsolin homology domain Back     alignment and domain information
>PF00626 Gelsolin: Gelsolin repeat; InterPro: IPR007123 Gelsolin is a cytoplasmic, calcium-regulated, actin-modulating protein that binds to the barbed ends of actin filaments, preventing monomer exchange (end-blocking or capping) [] Back     alignment and domain information
>PF00626 Gelsolin: Gelsolin repeat; InterPro: IPR007123 Gelsolin is a cytoplasmic, calcium-regulated, actin-modulating protein that binds to the barbed ends of actin filaments, preventing monomer exchange (end-blocking or capping) [] Back     alignment and domain information
>KOG1984|consensus Back     alignment and domain information
>COG5028 Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion] Back     alignment and domain information
>PTZ00395 Sec24-related protein; Provisional Back     alignment and domain information
>COG5028 Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1984|consensus Back     alignment and domain information
>KOG1985|consensus Back     alignment and domain information
>PTZ00395 Sec24-related protein; Provisional Back     alignment and domain information
>PLN00162 transport protein sec23; Provisional Back     alignment and domain information
>PLN00162 transport protein sec23; Provisional Back     alignment and domain information
>KOG1985|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query282
3ffn_A 782 Crystal Structure Of Calcium-Free Human Gelsolin Le 5e-34
3ffk_A377 Crystal Structure Of Human Gelsolin Domains G1-G3 B 7e-34
2fgh_A 731 Atp Bound Gelsolin Length = 731 5e-33
1d0n_A 729 The Crystal Structure Of Calcium-Free Equine Plasma 5e-33
1rgi_G346 Crystal Structure Of Gelsolin Domains G1-G3 Bound T 7e-33
1j72_A347 Crystal Structure Of Mutant Macrophage Capping Prot 5e-29
1jhw_A347 Ca2+-Binding Mimicry In The Crystal Structure Of Th 2e-28
1kcq_A104 Human Gelsolin Domain 2 With A Cd2+ Bound Length = 2e-14
1svy_A114 Severin Domain 2, 1.75 Angstrom Crystal Structure L 2e-11
1svq_A114 Structure Of Severin Domain 2 In Solution Length = 2e-11
1nph_A329 Gelsolin Domains 4-6 In Active, Actin Free Conforma 4e-09
3fg6_A371 Structure Of The C-terminus Of Adseverin Length = 3 5e-09
1p8x_A344 The Calcium-activated C-terminal Half Of Gelsolin L 2e-08
1h1v_G331 Gelsolin G4-G6ACTIN COMPLEX Length = 331 2e-08
3fg7_A398 The Crystal Structure Of Villin Domain 6 Length = 3 2e-06
>pdb|3FFN|A Chain A, Crystal Structure Of Calcium-Free Human Gelsolin Length = 782 Back     alignment and structure 
Iteration: 1

 Score =  141 bits (355), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 84/222 (37%), Positives = 125/222 (56%), Gaps = 11/222 (4%)
Query: 42  TGIRYLPGGVASGFNHVDINAPGEKKLYQIKGKKNIRVRQVALSVGSMNKGDCFALDTGR 101
           +G++Y  GGVASGF HV  N    ++L+Q+KG++ +R  +V +S  S N GDCF LD G 
Sbjct: 163 SGLKYKKGGVASGFKHVVPNEVVVQRLFQVKGRRVVRATEVPVSWESFNNGDCFILDLGN 222
Query: 102 EVLVYVGSKAARTERLKAISVANQIRDQDHNGRATVSIIDENSSPVEVTRFFTELGSGSN 161
            +  + GS + R ERLKA  V+  IRD + +GRA V + +E + P  + +    LG    
Sbjct: 223 NIHQWCGSNSNRYERLKATQVSKGIRDNERSGRARVHVSEEGTEPEAMLQV---LGPKPA 279
Query: 162 NQVADVPYGGDD-AEFETKQDKAVKLYKISDASGNVKSELI-EQIPLAQKSLNQGDTFIL 219
                +P G +D A+ +    K  KLYK+S+ +G +   L+ ++ P AQ +L   D FIL
Sbjct: 280 -----LPAGTEDTAKEDAANRKLAKLYKVSNGAGTMSVSLVADENPFAQGALKSEDCFIL 334
Query: 220 DTVTSG-IYVWIGKDSTTAEKVEGLKRGQAFLTNNNYPAWTK 260
           D    G I+VW GK + T E+   LK    F+T  +YP  T+
Sbjct: 335 DHGKDGKIFVWKGKQANTEERKAALKTASDFITKMDYPKQTQ 376
>pdb|3FFK|A Chain A, Crystal Structure Of Human Gelsolin Domains G1-G3 Bound To Actin Length = 377 Back     alignment and structure
>pdb|2FGH|A Chain A, Atp Bound Gelsolin Length = 731 Back     alignment and structure
>pdb|1D0N|A Chain A, The Crystal Structure Of Calcium-Free Equine Plasma Gelsolin. Length = 729 Back     alignment and structure
>pdb|1RGI|G Chain G, Crystal Structure Of Gelsolin Domains G1-G3 Bound To Actin Length = 346 Back     alignment and structure
>pdb|1J72|A Chain A, Crystal Structure Of Mutant Macrophage Capping Protein (Cap G) With Actin-Severing Activity In The Ca2+-Free Form Length = 347 Back     alignment and structure
>pdb|1JHW|A Chain A, Ca2+-Binding Mimicry In The Crystal Structure Of The Eu3+-Bound Mutant Human Macrophage Capping Protein Cap G Length = 347 Back     alignment and structure
>pdb|1KCQ|A Chain A, Human Gelsolin Domain 2 With A Cd2+ Bound Length = 104 Back     alignment and structure
>pdb|1SVY|A Chain A, Severin Domain 2, 1.75 Angstrom Crystal Structure Length = 114 Back     alignment and structure
>pdb|1SVQ|A Chain A, Structure Of Severin Domain 2 In Solution Length = 114 Back     alignment and structure
>pdb|1NPH|A Chain A, Gelsolin Domains 4-6 In Active, Actin Free Conformation Identifies Sites Of Regulatory Calcium Ions Length = 329 Back     alignment and structure
>pdb|3FG6|A Chain A, Structure Of The C-terminus Of Adseverin Length = 371 Back     alignment and structure
>pdb|1P8X|A Chain A, The Calcium-activated C-terminal Half Of Gelsolin Length = 344 Back     alignment and structure
>pdb|1H1V|G Chain G, Gelsolin G4-G6ACTIN COMPLEX Length = 331 Back     alignment and structure
>pdb|3FG7|A Chain A, The Crystal Structure Of Villin Domain 6 Length = 398 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query282
1j72_A347 Macrophage capping protein; actin, human, CAP G, G 2e-47
1d0n_A 729 Horse plasma gelsolin; mixed alpha-beta structure, 1e-46
1d0n_A729 Horse plasma gelsolin; mixed alpha-beta structure, 8e-26
1d0n_A 729 Horse plasma gelsolin; mixed alpha-beta structure, 8e-10
1svq_A114 Severin; actin-binding; NMR {Dictyostelium discoid 4e-32
1svq_A114 Severin; actin-binding; NMR {Dictyostelium discoid 6e-10
1kcq_A104 Gelsolin, brevin, ADF, AGEL; alpha-beta structure, 6e-32
1kcq_A104 Gelsolin, brevin, ADF, AGEL; alpha-beta structure, 2e-07
3fg7_A398 Villin-1; actin binding protein, gelsolin, actin c 2e-30
2fh1_A344 Gelsolin; calcium, contractIle protein; 1.55A {Hom 1e-27
3fg6_A371 Adseverin, scinderin; C-terminus of adseverin, act 3e-27
3fg6_A 371 Adseverin, scinderin; C-terminus of adseverin, act 9e-09
3fg6_A371 Adseverin, scinderin; C-terminus of adseverin, act 1e-07
1t44_G147 Chimera of gelsolin domain 1 and C-terminal domain 4e-04
>1j72_A Macrophage capping protein; actin, human, CAP G, GCAP39, MBHL, GELS structural protein; 2.50A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1jhw_A Length = 347 Back     alignment and structure
 Score =  160 bits (406), Expect = 2e-47
 Identities = 76/221 (34%), Positives = 113/221 (51%), Gaps = 8/221 (3%)

Query: 42  TGIRYLPGGVASGFNHVDINAPGEKKLYQIKGKKNIRVRQVALSVGSMNKGDCFALDTGR 101
            G++Y  GGV SGF HV  N    ++LYQ+KGKKNIR  + AL+  S N GDCF LD G+
Sbjct: 112 RGLKYQEGGVESGFKHVVPNEVVVQRLYQVKGKKNIRATERALNWDSFNTGDCFILDLGQ 171

Query: 102 EVLVYVGSKAARTERLKAISVANQIRDQDHNGRATVSIIDENSSPVEVTRFFTELGSGSN 161
            +  + G K+   ER KA  +A  IRD +  G+A V I+ +   P E       LG    
Sbjct: 172 NIFAWCGGKSNILERNKARDLALAIRDSERQGKAQVEIVTDGEEPAE---MIQVLGPKPA 228

Query: 162 NQVADVPYGGDDAEFETKQDKAVKLYKISDASGNVKSELI-EQIPLAQKSLNQGDTFILD 220
            +  +     +D   +    +A  LYK+SDA+G +    + +  P A + L   D F+LD
Sbjct: 229 LKEGNPE---EDLTADKANAQAAALYKVSDATGQMNLTKVADSSPFALELLISDDCFVLD 285

Query: 221 TVTSG-IYVWIGKDSTTAEKVEGLKRGQAFLTNNNYPAWTK 260
               G IY+W G+ +   E+   L+  + F++   Y   T+
Sbjct: 286 NGLCGKIYIWKGRKANEKERQAALQVAEGFISRMQYAPNTQ 326
>1d0n_A Horse plasma gelsolin; mixed alpha-beta structure, actin-binding protein, protein D packing, contractIle protein; 2.50A {Equus caballus} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 PDB: 2fgh_A* 3ffn_A 3ffk_A* 1rgi_G* Length = 729 Back     alignment and structure
>1d0n_A Horse plasma gelsolin; mixed alpha-beta structure, actin-binding protein, protein D packing, contractIle protein; 2.50A {Equus caballus} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 PDB: 2fgh_A* 3ffn_A 3ffk_A* 1rgi_G* Length = 729 Back     alignment and structure
>1d0n_A Horse plasma gelsolin; mixed alpha-beta structure, actin-binding protein, protein D packing, contractIle protein; 2.50A {Equus caballus} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 PDB: 2fgh_A* 3ffn_A 3ffk_A* 1rgi_G* Length = 729 Back     alignment and structure
>1svq_A Severin; actin-binding; NMR {Dictyostelium discoideum} SCOP: d.109.1.1 PDB: 1svr_A 1svy_A Length = 114 Back     alignment and structure
>1svq_A Severin; actin-binding; NMR {Dictyostelium discoideum} SCOP: d.109.1.1 PDB: 1svr_A 1svy_A Length = 114 Back     alignment and structure
>1kcq_A Gelsolin, brevin, ADF, AGEL; alpha-beta structure, actin-binding protein, familial amyloi finnish type, cadmium binding, metal binding; 1.65A {Homo sapiens} SCOP: d.109.1.1 Length = 104 Back     alignment and structure
>1kcq_A Gelsolin, brevin, ADF, AGEL; alpha-beta structure, actin-binding protein, familial amyloi finnish type, cadmium binding, metal binding; 1.65A {Homo sapiens} SCOP: d.109.1.1 Length = 104 Back     alignment and structure
>3fg7_A Villin-1; actin binding protein, gelsolin, actin capping, actin-binding, calcium, cytoplasm, cytoskeleton, structural protein; 2.00A {Homo sapiens} Length = 398 Back     alignment and structure
>2fh1_A Gelsolin; calcium, contractIle protein; 1.55A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1p8x_A 2fh2_A 2fh3_A 2fh4_A 1h1v_G* 1nph_A Length = 344 Back     alignment and structure
>3fg6_A Adseverin, scinderin; C-terminus of adseverin, actin capping, actin-binding, cytos phosphoprotein, actin-binding protein; 3.00A {Homo sapiens} Length = 371 Back     alignment and structure
>3fg6_A Adseverin, scinderin; C-terminus of adseverin, actin capping, actin-binding, cytos phosphoprotein, actin-binding protein; 3.00A {Homo sapiens} Length = 371 Back     alignment and structure
>3fg6_A Adseverin, scinderin; C-terminus of adseverin, actin capping, actin-binding, cytos phosphoprotein, actin-binding protein; 3.00A {Homo sapiens} Length = 371 Back     alignment and structure
>1t44_G Chimera of gelsolin domain 1 and C-terminal domain of thymosin beta-4; structural protein; HET: ATP; 2.00A {Homo sapiens} SCOP: d.109.1.1 Length = 147 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query282
1j72_A347 Macrophage capping protein; actin, human, CAP G, G 100.0
1d0n_A 729 Horse plasma gelsolin; mixed alpha-beta structure, 100.0
3fg6_A371 Adseverin, scinderin; C-terminus of adseverin, act 100.0
3fg7_A398 Villin-1; actin binding protein, gelsolin, actin c 100.0
2fh1_A344 Gelsolin; calcium, contractIle protein; 1.55A {Hom 100.0
1d0n_A729 Horse plasma gelsolin; mixed alpha-beta structure, 100.0
1svq_A114 Severin; actin-binding; NMR {Dictyostelium discoid 99.97
1kcq_A104 Gelsolin, brevin, ADF, AGEL; alpha-beta structure, 99.96
2fh1_A 344 Gelsolin; calcium, contractIle protein; 1.55A {Hom 99.95
1j72_A 347 Macrophage capping protein; actin, human, CAP G, G 99.95
3fg6_A 371 Adseverin, scinderin; C-terminus of adseverin, act 99.93
3tu5_B297 Gelsolin, protein cordon-BLeu, thymosin beta-4; un 99.92
3fg7_A 398 Villin-1; actin binding protein, gelsolin, actin c 99.9
1kcq_A104 Gelsolin, brevin, ADF, AGEL; alpha-beta structure, 99.81
1svq_A114 Severin; actin-binding; NMR {Dictyostelium discoid 99.74
1t44_G147 Chimera of gelsolin domain 1 and C-terminal domain 99.42
2ff3_A150 Gelsolin; protein-protein complex, structural prot 99.35
2vik_A126 Villin 14T; actin-binding protein, capping protein 99.3
3cip_G128 Gelsolin; actin, dictyostelium discoideum, actin-a 99.3
3tu5_B297 Gelsolin, protein cordon-BLeu, thymosin beta-4; un 99.28
3cip_G128 Gelsolin; actin, dictyostelium discoideum, actin-a 99.07
2ff3_A150 Gelsolin; protein-protein complex, structural prot 99.07
2vik_A126 Villin 14T; actin-binding protein, capping protein 99.04
1t44_G147 Chimera of gelsolin domain 1 and C-terminal domain 99.01
3eh2_A766 Protein transport protein SEC24C; copii-coat prote 96.53
3efo_B770 SEC24 related gene family, member D; copii, coat p 95.85
2nut_A769 Protein transport protein SEC23A; human copii SEC2 94.67
1m2o_A768 SEC23, protein transport protein SEC23, SEC23P; zi 94.24
3eh2_A766 Protein transport protein SEC24C; copii-coat prote 94.16
3eh1_A751 Protein transport protein SEC24B; copii coat prote 93.93
3efo_B770 SEC24 related gene family, member D; copii, coat p 93.61
3eh1_A751 Protein transport protein SEC24B; copii coat prote 93.39
1pcx_A810 Protein transport protein SEC24; 2.50A {Saccharomy 92.76
2nut_A769 Protein transport protein SEC23A; human copii SEC2 92.65
1m2o_A768 SEC23, protein transport protein SEC23, SEC23P; zi 91.75
1m2v_B926 SEC24, protein transport protein SEC24, SEC24P, SE 91.51
1pcx_A810 Protein transport protein SEC24; 2.50A {Saccharomy 90.71
1m2v_B926 SEC24, protein transport protein SEC24, SEC24P, SE 89.27
>1j72_A Macrophage capping protein; actin, human, CAP G, GCAP39, MBHL, GELS structural protein; 2.50A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1jhw_A Back     alignment and structure
Probab=100.00  E-value=9.4e-66  Score=471.70  Aligned_cols=267  Identities=30%  Similarity=0.446  Sum_probs=240.0

Q ss_pred             hhhchheeeecccccccCCCcceeeeecC--hhhHHhhCCCCeEEecCccCCCCeeecCCCCCcceEEEEEeCccEEEEE
Q psy8088           4 DDRMSLTTAVSDEEDVESAHISPYRAKQT--GTAAASFNCTGIRYLPGGVASGFNHVDINAPGEKKLYQIKGKKNIRVRQ   81 (282)
Q Consensus         4 ~~~~~~~~~~~d~~~~~~~~~~q~Re~Qg--s~~Fl~~F~~~i~~~~Gg~~s~f~~~~~~~~~~~rL~~v~G~~~~~~~e   81 (282)
                      ...+|++|+++|+  .+||+|+|+||+||  |++||+||+++|+|++||+++||+|++++....+|||||+|+++++++|
T Consensus        74 ~~~aa~~t~~ld~--~lgg~~vq~R~~Qg~Es~~Fl~~F~~~~~i~~Gg~~sgf~~~~~~~~~~~rL~~v~G~~~v~~~e  151 (347)
T 1j72_A           74 QGACAVLAVQLDD--YLGGRPVQHREVQGNESDLFMSYFPRGLKYQEGGVESGFKHVVPNEVVVQRLYQVKGKKNIRATE  151 (347)
T ss_dssp             HHHHHHHHHHHHH--HTTTCSEEEEEETTSCCHHHHTTCSSCCEEECSSCCTTCCCCCCCCCEEEEEEEEECSSSCEEEE
T ss_pred             HHHHHHHHHHHHH--HhCCCCcEEEeeCCCCCHHHHHhhCCCeEEeeCCccccccccccCCCCCcEEEEEECCCceEEEE
Confidence            3457799999999  58999999999999  9999999999999999999999999988765679999999999999999


Q ss_pred             eecccccCCCCCeEEEecCCeEEEEeCCCCCHHHHHHHHHHHHHhccccCCCcceEEEecCCCCCcchhHHHHHhCCCCC
Q psy8088          82 VALSVGSMNKGDCFALDTGREVLVYVGSKAARTERLKAISVANQIRDQDHNGRATVSIIDENSSPVEVTRFFTELGSGSN  161 (282)
Q Consensus        82 V~~~~~sL~s~d~fIld~~~~iyvW~G~~ss~~er~~A~~~a~~l~~~e~~g~~~v~~v~e~~~g~E~~~F~~~lg~g~~  161 (282)
                      ||++++||||+|||||+++..||+|+|++|+..||.+|+++|+.|++.+++|++++++|+|   |.|+++||.+|| |+.
T Consensus       152 V~~~~~sLns~d~FIL~~~~~iy~W~G~~s~~~Er~~A~~~a~~i~~~~~~g~~~v~~v~E---G~E~~~Fw~~LG-g~~  227 (347)
T 1j72_A          152 RALNWDSFNTGDCFILDLGQNIFAWCGGKSNILERNKARDLALAIRDSERQGKAQVEIVTD---GEEPAEMIQVLG-PKP  227 (347)
T ss_dssp             ECSSGGGCBTTSEEEEEETTEEEEEECTTCCHHHHHHHHHHHHHHHTTSCCSSCEEEEEET---TCCCHHHHHHHC-SCC
T ss_pred             EeeeHHHcCCCceEEEecCCEEEEEECCCCCHHHHHHHHHHHHHHHhhccCCCceEEEEeC---CCCHHHHHHHhC-CCc
Confidence            9999999999999999999999999999999999999999999998888888999999999   899999999999 665


Q ss_pred             CCCCCCCCCCCChhhhccccccceEEEEECCCCCeEEEEeecc-cCCccccCCCCEEEEecCC-CeEEEEecCCCCHHHH
Q psy8088         162 NQVADVPYGGDDAEFETKQDKAVKLYKISDASGNVKSELIEQI-PLAQKSLNQGDTFILDTVT-SGIYVWIGKDSTTAEK  239 (282)
Q Consensus       162 ~~~~~~~~~~~d~~~~~~~~~~~rLy~vs~~~g~~~~~ev~~~-~~~q~~L~s~~vfILD~g~-~~iyvW~G~~as~~er  239 (282)
                      .+....  .++|...+......+|||+|++.+|++.++||..+ +|+|++|++++|||||+++ ++||||+|++|+..+|
T Consensus       228 ~~~~~~--~~~d~~~~~~~~~~~rLy~vs~~~G~~~v~ev~~~~~~~q~~L~s~dv~ILD~g~~~~IyVW~G~~a~~~er  305 (347)
T 1j72_A          228 ALKEGN--PEEDLTADKANAQAAALYKVSDATGQMNLTKVADSSPFALELLISDDCFVLDNGLCGKIYIWKGRKANEKER  305 (347)
T ss_dssp             CCBCSC--CSSCCTTSSSSSCCCEEEEEECTTSSCEEEEEECSSSBCGGGCCTTSEEEEECGGGSEEEEEECTTCCHHHH
T ss_pred             ccccCC--cchhhhhhhhcccCCEEEEEECCCCCEEEEeeccCCCCCHHHcCCCCEEEEecCCCcEEEEEeCCCCCHHHH
Confidence            443211  11222223334467999999999999999999765 9999999999999999992 4999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCCcceEEEecCCCCChhhhhhhh
Q psy8088         240 VEGLKRGQAFLTNNNYPAWTKTGEIKTSLEVWAEEKEEA  278 (282)
Q Consensus       240 ~~a~~~A~~~~~~~~~~~~~~i~~v~eG~Ep~~F~~~~~  278 (282)
                      +.|+.+|++|++..+||.+++|++|.||.||..|+..|.
T Consensus       306 ~~A~~~A~~y~~~~~rp~~~~i~~v~eG~Ep~~Fk~~F~  344 (347)
T 1j72_A          306 QAALQVAEGFISRMQYAPNTQVEILPQGRESPIFKQFFK  344 (347)
T ss_dssp             HHHHHHHHHHHHHHTCCTTCEEEEEETTCCCTTTCCBST
T ss_pred             HHHHHHHHHHHHhcCCCCCCeEEEEcCCCCCHHHHHHhh
Confidence            999999999999999999999999999999999999874
>1d0n_A Horse plasma gelsolin; mixed alpha-beta structure, actin-binding protein, protein D packing, contractIle protein; 2.50A {Equus caballus} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 PDB: 2fgh_A* 3ffn_A 3ffk_A* 1rgi_G* Back     alignment and structure
>3fg6_A Adseverin, scinderin; C-terminus of adseverin, actin capping, actin-binding, cytos phosphoprotein, actin-binding protein; 3.00A {Homo sapiens} Back     alignment and structure
>3fg7_A Villin-1; actin binding protein, gelsolin, actin capping, actin-binding, calcium, cytoplasm, cytoskeleton, structural protein; 2.00A {Homo sapiens} PDB: 2llf_A Back     alignment and structure
>2fh1_A Gelsolin; calcium, contractIle protein; 1.55A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1p8x_A 2fh2_A 2fh3_A 2fh4_A 1h1v_G* 1nph_A Back     alignment and structure
>1d0n_A Horse plasma gelsolin; mixed alpha-beta structure, actin-binding protein, protein D packing, contractIle protein; 2.50A {Equus caballus} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 PDB: 2fgh_A* 3ffn_A 3ffk_A* 1rgi_G* Back     alignment and structure
>1svq_A Severin; actin-binding; NMR {Dictyostelium discoideum} SCOP: d.109.1.1 PDB: 1svr_A 1svy_A Back     alignment and structure
>1kcq_A Gelsolin, brevin, ADF, AGEL; alpha-beta structure, actin-binding protein, familial amyloi finnish type, cadmium binding, metal binding; 1.65A {Homo sapiens} SCOP: d.109.1.1 Back     alignment and structure
>2fh1_A Gelsolin; calcium, contractIle protein; 1.55A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1p8x_A 2fh2_A 2fh3_A 2fh4_A 1h1v_G* 1nph_A Back     alignment and structure
>1j72_A Macrophage capping protein; actin, human, CAP G, GCAP39, MBHL, GELS structural protein; 2.50A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1jhw_A Back     alignment and structure
>3fg6_A Adseverin, scinderin; C-terminus of adseverin, actin capping, actin-binding, cytos phosphoprotein, actin-binding protein; 3.00A {Homo sapiens} Back     alignment and structure
>3tu5_B Gelsolin, protein cordon-BLeu, thymosin beta-4; unusual hairpin conformation in the D-loop, structural prote binding protein complex; HET: ATP; 3.00A {Homo sapiens} Back     alignment and structure
>3fg7_A Villin-1; actin binding protein, gelsolin, actin capping, actin-binding, calcium, cytoplasm, cytoskeleton, structural protein; 2.00A {Homo sapiens} PDB: 2llf_A Back     alignment and structure
>1kcq_A Gelsolin, brevin, ADF, AGEL; alpha-beta structure, actin-binding protein, familial amyloi finnish type, cadmium binding, metal binding; 1.65A {Homo sapiens} SCOP: d.109.1.1 Back     alignment and structure
>1svq_A Severin; actin-binding; NMR {Dictyostelium discoideum} SCOP: d.109.1.1 PDB: 1svr_A 1svy_A Back     alignment and structure
>1t44_G Chimera of gelsolin domain 1 and C-terminal domain of thymosin beta-4; structural protein; HET: ATP; 2.00A {Homo sapiens} SCOP: d.109.1.1 Back     alignment and structure
>2ff3_A Gelsolin; protein-protein complex, structural protein/contractIle protein complex; HET: ATP; 2.00A {Homo sapiens} SCOP: d.109.1.1 PDB: 2ff6_G* Back     alignment and structure
>2vik_A Villin 14T; actin-binding protein, capping protein, calcium-binding protein, cytoskeletal protein; NMR {Gallus gallus} SCOP: d.109.1.1 PDB: 2vil_A Back     alignment and structure
>3cip_G Gelsolin; actin, dictyostelium discoideum, actin-associated methyl histidine, ATP-binding, cytoskeleton, nucleotide-BIN phosphoprotein; HET: HIC ATP; 1.60A {Homo sapiens} SCOP: d.109.1.1 PDB: 3ci5_G* 1p8z_G* 1d4x_G* 1nlv_G* 1mdu_A* 1nm1_G* 1nmd_G* 1yag_G* 1yvn_G* 3cjb_G* 3cjc_G* 1esv_S* 1eqy_S* 1c0g_S* 1c0f_S* 1dej_S* 3a5l_S* 3a5m_S* 3a5n_S* 3a5o_S* Back     alignment and structure
>3tu5_B Gelsolin, protein cordon-BLeu, thymosin beta-4; unusual hairpin conformation in the D-loop, structural prote binding protein complex; HET: ATP; 3.00A {Homo sapiens} Back     alignment and structure
>3cip_G Gelsolin; actin, dictyostelium discoideum, actin-associated methyl histidine, ATP-binding, cytoskeleton, nucleotide-BIN phosphoprotein; HET: HIC ATP; 1.60A {Homo sapiens} SCOP: d.109.1.1 PDB: 3ci5_G* 1p8z_G* 1d4x_G* 1nlv_G* 1mdu_A* 1nm1_G* 1nmd_G* 1yag_G* 1yvn_G* 3cjb_G* 3cjc_G* 1esv_S* 1eqy_S* 1c0g_S* 1c0f_S* 1dej_S* 3a5l_S* 3a5m_S* 3a5n_S* 3a5o_S* Back     alignment and structure
>2ff3_A Gelsolin; protein-protein complex, structural protein/contractIle protein complex; HET: ATP; 2.00A {Homo sapiens} SCOP: d.109.1.1 PDB: 2ff6_G* Back     alignment and structure
>2vik_A Villin 14T; actin-binding protein, capping protein, calcium-binding protein, cytoskeletal protein; NMR {Gallus gallus} SCOP: d.109.1.1 PDB: 2vil_A Back     alignment and structure
>1t44_G Chimera of gelsolin domain 1 and C-terminal domain of thymosin beta-4; structural protein; HET: ATP; 2.00A {Homo sapiens} SCOP: d.109.1.1 Back     alignment and structure
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens} Back     alignment and structure
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B Back     alignment and structure
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A Back     alignment and structure
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A* Back     alignment and structure
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens} Back     alignment and structure
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B Back     alignment and structure
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B Back     alignment and structure
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B Back     alignment and structure
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A Back     alignment and structure
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A Back     alignment and structure
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A* Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Back     alignment and structure
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 282
d1j72a2116 d.109.1.1 (A:125-240) Macrophage capping protein C 2e-30
d1j72a2116 d.109.1.1 (A:125-240) Macrophage capping protein C 7e-11
d1kcqa_104 d.109.1.1 (A:) Gelsolin {Human (Homo sapiens) [Tax 3e-27
d1kcqa_104 d.109.1.1 (A:) Gelsolin {Human (Homo sapiens) [Tax 1e-09
d1svya_102 d.109.1.1 (A:) Severin, domain 2 {Dictyostelium di 2e-22
d1svya_102 d.109.1.1 (A:) Severin, domain 2 {Dictyostelium di 5e-12
d2fh1a296 d.109.1.1 (A:533-628) Gelsolin {Human (Homo sapien 3e-19
d2fh1a296 d.109.1.1 (A:533-628) Gelsolin {Human (Homo sapien 3e-09
d1j72a3107 d.109.1.1 (A:241-347) Macrophage capping protein C 2e-17
d1j72a3107 d.109.1.1 (A:241-347) Macrophage capping protein C 9e-13
d1d0na3121 d.109.1.1 (A:263-383) Gelsolin {Horse (Equus cabal 4e-16
d1d0na3121 d.109.1.1 (A:263-383) Gelsolin {Horse (Equus cabal 3e-13
d2fh1a3113 d.109.1.1 (A:629-741) Gelsolin {Human (Homo sapien 1e-12
d2fh1a3113 d.109.1.1 (A:629-741) Gelsolin {Human (Homo sapien 2e-12
>d1j72a2 d.109.1.1 (A:125-240) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]} Length = 116 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Gelsolin-like
superfamily: Actin depolymerizing proteins
family: Gelsolin-like
domain: Macrophage capping protein Cap G
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  108 bits (272), Expect = 2e-30
 Identities = 43/104 (41%), Positives = 57/104 (54%), Gaps = 3/104 (2%)

Query: 55  FNHVDINAPGEKKLYQIKGKKNIRVRQVALSVGSMNKGDCFALDTGREVLVYVGSKAART 114
           F HV  N    ++LYQ+KGKKNIR  + AL+  S N GDCF LD G+ +  + G K+   
Sbjct: 1   FKHVVPNEVVVQRLYQVKGKKNIRATERALNWDSFNTGDCFILDLGQNIFAWCGGKSNIL 60

Query: 115 ERLKAISVANQIRDQDHNGRATVSIIDENSSPVEVTRFFTELGS 158
           ER KA  +A  IRD +  G+A V I+ +   P E       LG 
Sbjct: 61  ERNKARDLALAIRDSERQGKAQVEIVTDGEEPAE---MIQVLGP 101
>d1j72a2 d.109.1.1 (A:125-240) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]} Length = 116 Back     information, alignment and structure
>d1kcqa_ d.109.1.1 (A:) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} Length = 104 Back     information, alignment and structure
>d1kcqa_ d.109.1.1 (A:) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} Length = 104 Back     information, alignment and structure
>d1svya_ d.109.1.1 (A:) Severin, domain 2 {Dictyostelium discoideum [TaxId: 44689]} Length = 102 Back     information, alignment and structure
>d1svya_ d.109.1.1 (A:) Severin, domain 2 {Dictyostelium discoideum [TaxId: 44689]} Length = 102 Back     information, alignment and structure
>d2fh1a2 d.109.1.1 (A:533-628) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} Length = 96 Back     information, alignment and structure
>d2fh1a2 d.109.1.1 (A:533-628) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} Length = 96 Back     information, alignment and structure
>d1j72a3 d.109.1.1 (A:241-347) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]} Length = 107 Back     information, alignment and structure
>d1j72a3 d.109.1.1 (A:241-347) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]} Length = 107 Back     information, alignment and structure
>d1d0na3 d.109.1.1 (A:263-383) Gelsolin {Horse (Equus caballus) [TaxId: 9796]} Length = 121 Back     information, alignment and structure
>d1d0na3 d.109.1.1 (A:263-383) Gelsolin {Horse (Equus caballus) [TaxId: 9796]} Length = 121 Back     information, alignment and structure
>d2fh1a3 d.109.1.1 (A:629-741) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} Length = 113 Back     information, alignment and structure
>d2fh1a3 d.109.1.1 (A:629-741) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} Length = 113 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query282
d1j72a2116 Macrophage capping protein Cap G {Human (Homo sapi 99.96
d1kcqa_104 Gelsolin {Human (Homo sapiens) [TaxId: 9606]} 99.94
d1svya_102 Severin, domain 2 {Dictyostelium discoideum [TaxId 99.93
d1j72a3107 Macrophage capping protein Cap G {Human (Homo sapi 99.93
d2fh1a3113 Gelsolin {Human (Homo sapiens) [TaxId: 9606]} 99.93
d2fh1a296 Gelsolin {Human (Homo sapiens) [TaxId: 9606]} 99.92
d1d0na3121 Gelsolin {Horse (Equus caballus) [TaxId: 9796]} 99.92
d1svya_102 Severin, domain 2 {Dictyostelium discoideum [TaxId 99.86
d1kcqa_104 Gelsolin {Human (Homo sapiens) [TaxId: 9606]} 99.83
d1j72a2116 Macrophage capping protein Cap G {Human (Homo sapi 99.82
d2fh1a296 Gelsolin {Human (Homo sapiens) [TaxId: 9606]} 99.8
d2fh1a3113 Gelsolin {Human (Homo sapiens) [TaxId: 9606]} 99.75
d1d0na3121 Gelsolin {Horse (Equus caballus) [TaxId: 9796]} 99.72
d1j72a3107 Macrophage capping protein Cap G {Human (Homo sapi 99.71
d1j72a1114 Macrophage capping protein Cap G {Human (Homo sapi 99.28
d2vika_126 Villin, domain 1 (res. 1-126) {Chicken (Gallus gal 99.27
d3cipg1124 Gelsolin {Human (Homo sapiens) [TaxId: 9606]} 99.27
d2fh1a1121 Gelsolin {Human (Homo sapiens) [TaxId: 9606]} 99.06
d1j72a1114 Macrophage capping protein Cap G {Human (Homo sapi 99.02
d2vika_126 Villin, domain 1 (res. 1-126) {Chicken (Gallus gal 99.02
d3cipg1124 Gelsolin {Human (Homo sapiens) [TaxId: 9606]} 98.99
d2fh1a1121 Gelsolin {Human (Homo sapiens) [TaxId: 9606]} 98.87
d1pd0a4173 Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T 97.51
d1pd0a4173 Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T 96.83
d2qtva4142 Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T 92.5
d2qtva4142 Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T 80.54
>d1j72a2 d.109.1.1 (A:125-240) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Gelsolin-like
superfamily: Actin depolymerizing proteins
family: Gelsolin-like
domain: Macrophage capping protein Cap G
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=3.2e-29  Score=192.36  Aligned_cols=106  Identities=40%  Similarity=0.599  Sum_probs=99.4

Q ss_pred             CeeecCCCCCcceEEEEEeCccEEEEEeecccccCCCCCeEEEecCCeEEEEeCCCCCHHHHHHHHHHHHHhccccCCCc
Q psy8088          55 FNHVDINAPGEKKLYQIKGKKNIRVRQVALSVGSMNKGDCFALDTGREVLVYVGSKAARTERLKAISVANQIRDQDHNGR  134 (282)
Q Consensus        55 f~~~~~~~~~~~rL~~v~G~~~~~~~eV~~~~~sL~s~d~fIld~~~~iyvW~G~~ss~~er~~A~~~a~~l~~~e~~g~  134 (282)
                      |+||.++....+|||||+|++++++.|||+++++|||+||||||+++.||+|+|++|+..+|.+|+.+|+.|...++.|+
T Consensus         1 f~hv~~~~~~~~rL~~v~G~~~~~~~eV~~~~~sL~s~dvfILd~~~~iyvW~G~~ss~~ek~~a~~~a~~~~~~~~~~~   80 (116)
T d1j72a2           1 FKHVVPNEVVVQRLYQVKGKKNIRATERALNWDSFNTGDCFILDLGQNIFAWCGGKSNILERNKARDLALAIRDSERQGK   80 (116)
T ss_dssp             CCCCCCCCCEEEEEEEEECSSSCEEEEECSSGGGCBTTSEEEEEETTEEEEEECTTCCHHHHHHHHHHHHHHHTTSCCSS
T ss_pred             CcccCCCCCCCcEEEEEECCCceEEEEeCCCHHHcCCCCEEEEECCCEEEEEECCCCCHHHHHHHHHHHHHHHhccCCCC
Confidence            78999888788999999999999999999999999999999999999999999999999999999999999987788888


Q ss_pred             ceEEEecCCCCCcchhHHHHHhCCCCCCCC
Q psy8088         135 ATVSIIDENSSPVEVTRFFTELGSGSNNQV  164 (282)
Q Consensus       135 ~~v~~v~e~~~g~E~~~F~~~lg~g~~~~~  164 (282)
                      ++|.+|+|   |.|+.+||++|| |+..+.
T Consensus        81 ~~v~~v~e---G~E~~~F~~~lG-g~~~~~  106 (116)
T d1j72a2          81 AQVEIVTD---GEEPAEMIQVLG-PKPALK  106 (116)
T ss_dssp             CEEEEEET---TCCCHHHHHHHC-SCCCCB
T ss_pred             CcEEEEEC---CCChHHHHHHhC-CCCCCC
Confidence            99999999   999999999999 776553
>d1kcqa_ d.109.1.1 (A:) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1svya_ d.109.1.1 (A:) Severin, domain 2 {Dictyostelium discoideum [TaxId: 44689]} Back     information, alignment and structure
>d1j72a3 d.109.1.1 (A:241-347) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fh1a3 d.109.1.1 (A:629-741) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fh1a2 d.109.1.1 (A:533-628) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1d0na3 d.109.1.1 (A:263-383) Gelsolin {Horse (Equus caballus) [TaxId: 9796]} Back     information, alignment and structure
>d1svya_ d.109.1.1 (A:) Severin, domain 2 {Dictyostelium discoideum [TaxId: 44689]} Back     information, alignment and structure
>d1kcqa_ d.109.1.1 (A:) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1j72a2 d.109.1.1 (A:125-240) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fh1a2 d.109.1.1 (A:533-628) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fh1a3 d.109.1.1 (A:629-741) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1d0na3 d.109.1.1 (A:263-383) Gelsolin {Horse (Equus caballus) [TaxId: 9796]} Back     information, alignment and structure
>d1j72a3 d.109.1.1 (A:241-347) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1j72a1 d.109.1.1 (A:11-124) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2vika_ d.109.1.1 (A:) Villin, domain 1 (res. 1-126) {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d3cipg1 d.109.1.1 (G:2-125) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fh1a1 d.109.1.1 (A:412-532) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1j72a1 d.109.1.1 (A:11-124) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2vika_ d.109.1.1 (A:) Villin, domain 1 (res. 1-126) {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d3cipg1 d.109.1.1 (G:2-125) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fh1a1 d.109.1.1 (A:412-532) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pd0a4 d.109.2.1 (A:754-926) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1pd0a4 d.109.2.1 (A:754-926) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2qtva4 d.109.2.1 (A:627-768) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2qtva4 d.109.2.1 (A:627-768) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure