Psyllid ID: psy8137

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------
Protein Sequence
MDPGPNTPPTATPPELFCHSLHFPKGMLLRWFNNLYNLEIIEEEAFSKWRENISDAYPGKGEALFQVNAWLNWLAEAESEEEEEEEEN
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHHHccccHHHHHHHHHHHHccccccccHHHHHHcccccccccHHHHHHHHHHHHHHHHHccccHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccccccHHHHHHHcccccHHHHHHHHHHHccHHHHcHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHccccccccccc
Coil and Loop (DISEMBL)
mdpgpntpptatppelfchslhfpkGMLLRWFNNLYNLEIIEEEAFSKWREnisdaypgkgeALFQVNAWLNWLAEaeseeeeeeeen
Flexible Loop (DISEMBL)
MDPGPNTPPTATPPELFCHSLHFPKGMLLRWFNNLYNLEIIEEEAFSKWRENISDAYPGKGEALFQVNAWLNWLAEAeseeeeeeeen
Low Complexity Region (SEG)
MDpgpntpptatppELFCHSLHFPKGMLLRWFNNLYNLeiieeeAFSKWRENISDAYPGKGEALFQVNAWLNWLaeaeseeeeeeeeN
Disordered region (IsUnstruct)
***************LFCHSLHFPKGMLLRWFNNLYNLEIIEEEAFSKWRENISDAYPGKGEALFQVNAWLNWLA*************
Disordered Region (DISOPRED)
*****NT*PTATPPELFCHSLHFPKGMLLRWFNNLYNLEIIEEEAFSKWRE***********ALFQVNAWLN****************
Disordered Region (DISEMBL)
**********ATPPELFCHSLHFPKGMLLRWFNNLYNLEIIEEEAFSKWRENISDAYPGKGEALFQVNAWLNWLAE************
Disordered Region (DISPRO)
****PNTPPTATPPELFCHSLHFPKGMLLRWFNNLYNLEIIEEEAFSKWRENISDAYPGKGEALFQVNAWLNWLAEAE**********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDPGPNTPPTATPPELFCHSLHFPKGMLLRWFNNLYNLEIIEEEAFSKWRENISDAYPGKGEALFQVNAWLNWLAEAESEEEEEEEEN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	88	2.2.26 [Sep-21-2011]
P79398	907	Eukaryotic translation in	yes	N/A	0.681	0.066	0.6	7e-17
Q5R7J9	907	Eukaryotic translation in	yes	N/A	0.681	0.066	0.6	7e-17
P78344	907	Eukaryotic translation in	yes	N/A	0.681	0.066	0.6	7e-17
Q95L46	907	Eukaryotic translation in	yes	N/A	0.681	0.066	0.6	7e-17
Q62448	906	Eukaryotic translation in	yes	N/A	0.681	0.066	0.6	1e-16
O73777	73	Eukaryotic translation in	no	N/A	0.681	0.821	0.6	2e-16
Q6NZJ6	1600	Eukaryotic translation in	no	N/A	0.784	0.043	0.371	4e-06
Q80XI3	1579	Eukaryotic translation in	no	N/A	0.681	0.037	0.442	3e-05
O43432	1585	Eukaryotic translation in	no	N/A	0.681	0.037	0.442	3e-05
P41110	1402	Eukaryotic translation in	no	N/A	0.784	0.049	0.357	4e-05

>sp|P79398|IF4G2_RABIT Eukaryotic translation initiation factor 4 gamma 2 OS=Oryctolagus cuniculus GN=EIF4G2 PE=2 SV=1

 Score = 85.9 bits (211), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 36/60 (60%), Positives = 50/60 (83%)

Query: 15  ELFCHSLHFPKGMLLRWFNNLYNLEIIEEEAFSKWRENISDAYPGKGEALFQVNAWLNWL 74
           ++ C++ +FPKGMLLR+F + Y++EIIEEEAF  W+E+I+  +PGKG+ALFQVN WL WL
Sbjct: 835 QVHCYNSNFPKGMLLRFFVHFYDMEIIEEEAFLAWKEDITQEFPGKGKALFQVNQWLTWL 894

Appears to play a role in the switch from cap-dependent to IRES-mediated translation during mitosis, apoptosis and viral infection. Cleaved by some caspases and viral proteases.
Oryctolagus cuniculus (taxid: 9986)

>sp|Q5R7J9|IF4G2_PONAB Eukaryotic translation initiation factor 4 gamma 2 OS=Pongo abelii GN=EIF4G2 PE=2 SV=2

 Score = 85.9 bits (211), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 36/60 (60%), Positives = 50/60 (83%)

Query: 15  ELFCHSLHFPKGMLLRWFNNLYNLEIIEEEAFSKWRENISDAYPGKGEALFQVNAWLNWL 74
           ++ C++ +FPKGMLLR+F + Y++EIIEEEAF  W+E+I+  +PGKG+ALFQVN WL WL
Sbjct: 835 QVHCYNSNFPKGMLLRFFVHFYDMEIIEEEAFLAWKEDITQEFPGKGKALFQVNQWLTWL 894

Appears to play a role in the switch from cap-dependent to IRES-mediated translation during mitosis, apoptosis and viral infection. Cleaved by some caspases and viral proteases.

Pongo abelii (taxid: 9601)

>sp|P78344|IF4G2_HUMAN Eukaryotic translation initiation factor 4 gamma 2 OS=Homo sapiens GN=EIF4G2 PE=1 SV=1

 Score = 85.9 bits (211), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 36/60 (60%), Positives = 50/60 (83%)

Query: 15  ELFCHSLHFPKGMLLRWFNNLYNLEIIEEEAFSKWRENISDAYPGKGEALFQVNAWLNWL 74
           ++ C++ +FPKGMLLR+F + Y++EIIEEEAF  W+E+I+  +PGKG+ALFQVN WL WL
Sbjct: 835 QVHCYNSNFPKGMLLRFFVHFYDMEIIEEEAFLAWKEDITQEFPGKGKALFQVNQWLTWL 894

Appears to play a role in the switch from cap-dependent to IRES-mediated translation during mitosis, apoptosis and viral infection. Cleaved by some caspases and viral proteases.

Homo sapiens (taxid: 9606)

>sp|Q95L46|IF4G2_BOVIN Eukaryotic translation initiation factor 4 gamma 2 OS=Bos taurus GN=EIF4G2 PE=2 SV=2

 Score = 85.9 bits (211), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 36/60 (60%), Positives = 50/60 (83%)

Query: 15  ELFCHSLHFPKGMLLRWFNNLYNLEIIEEEAFSKWRENISDAYPGKGEALFQVNAWLNWL 74
           ++ C++ +FPKGMLLR+F + Y++EIIEEEAF  W+E+I+  +PGKG+ALFQVN WL WL
Sbjct: 835 QVHCYNSNFPKGMLLRFFVHFYDMEIIEEEAFLAWKEDITQEFPGKGKALFQVNQWLTWL 894

Appears to play a role in the switch from cap-dependent to IRES-mediated translation during mitosis, apoptosis and viral infection. Cleaved by some caspases and viral proteases.

Bos taurus (taxid: 9913)

>sp|Q62448|IF4G2_MOUSE Eukaryotic translation initiation factor 4 gamma 2 OS=Mus musculus GN=Eif4g2 PE=1 SV=2

 Score = 85.5 bits (210), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/60 (60%), Positives = 49/60 (81%)

Query: 15  ELFCHSLHFPKGMLLRWFNNLYNLEIIEEEAFSKWRENISDAYPGKGEALFQVNAWLNWL 74
           ++ C++  FPKGMLLR+F + Y++EIIEEEAF  W+E+I+  +PGKG+ALFQVN WL WL
Sbjct: 834 QVHCYNSSFPKGMLLRFFVHFYDMEIIEEEAFLAWKEDITQEFPGKGKALFQVNQWLTWL 893

Appears to play a role in the switch from cap-dependent to IRES-mediated translation during mitosis, apoptosis and viral infection. Cleaved by some caspases and viral proteases.

Mus musculus (taxid: 10090)

>sp|O73777|IF4G2_CHICK Eukaryotic translation initiation factor 4 gamma 2 (Fragment) OS=Gallus gallus GN=EIF4G2 PE=2 SV=1

 Score = 84.3 bits (207), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 36/60 (60%), Positives = 50/60 (83%)

Query: 15 ELFCHSLHFPKGMLLRWFNNLYNLEIIEEEAFSKWRENISDAYPGKGEALFQVNAWLNWL 74
          ++ C++ +FPKGMLLR+F + Y++EIIEEEAF  W+E+I+  +PGKG+ALFQVN WL WL
Sbjct: 1  QVHCYNSNFPKGMLLRFFVHFYDMEIIEEEAFLAWKEDITQEFPGKGKALFQVNQWLTWL 60

Appears to play a role in the switch from cap-dependent to IRES-mediated translation during mitosis, apoptosis and viral infection. Cleaved by some caspases and viral proteases.

Gallus gallus (taxid: 9031)

>sp|Q6NZJ6|IF4G1_MOUSE Eukaryotic translation initiation factor 4 gamma 1 OS=Mus musculus GN=Eif4g1 PE=1 SV=1

 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 1/70 (1%)

Query: 15   ELFCHSLHFPKGMLLRWFNNLYNLEIIEEEAFSKWRENISDA-YPGKGEALFQVNAWLNW 73
            +    +L  P  +L  +F+ LY+ ++++E+AF  W  +   A   GKG AL  V A+ NW
Sbjct: 1529 QALVVTLEQPANLLRMFFDALYDEDVVKEDAFYSWESSKDPAEQQGKGVALKSVTAFFNW 1588

Query: 74   LAEAESEEEE 83
            L EAE EE +
Sbjct: 1589 LREAEDEESD 1598

Component of the protein complex eIF4F, which is involved in the recognition of the mRNA cap, ATP-dependent unwinding of 5'-terminal secondary structure and recruitment of mRNA to the ribosome.

Mus musculus (taxid: 10090)

>sp|Q80XI3|IF4G3_MOUSE Eukaryotic translation initiation factor 4 gamma 3 OS=Mus musculus GN=Eif4g3 PE=1 SV=2

 Score = 47.0 bits (110), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/61 (44%), Positives = 36/61 (59%), Gaps = 1/61 (1%)

Query: 24   PKGMLLRWFNNLYNLEIIEEEAFSKWRENISDA-YPGKGEALFQVNAWLNWLAEAESEEE 82
            P  +L  +F+ LY+ E+I E+AF KW  +   A   GKG AL  V A+  WL EAE E E
Sbjct: 1518 PANLLRMFFDCLYDEEVISEDAFYKWESSKDPAEQAGKGVALKSVTAFFTWLREAEEESE 1577

Query: 83   E 83
            +
Sbjct: 1578 D 1578

Probable component of the protein complex eIF4F, which is involved in the recognition of the mRNA cap, ATP-dependent unwinding of 5'-terminal secondary structure and recruitment of mRNA to the ribosome. Thought to be a functional homolog of EIF4G1.

Mus musculus (taxid: 10090)

>sp|O43432|IF4G3_HUMAN Eukaryotic translation initiation factor 4 gamma 3 OS=Homo sapiens GN=EIF4G3 PE=1 SV=2

 Score = 47.0 bits (110), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/61 (44%), Positives = 36/61 (59%), Gaps = 1/61 (1%)

Query: 24   PKGMLLRWFNNLYNLEIIEEEAFSKWRENISDAYP-GKGEALFQVNAWLNWLAEAESEEE 82
            P  +L  +F+ LY+ E+I E+AF KW  +   A   GKG AL  V A+  WL EAE E E
Sbjct: 1524 PANLLRMFFDCLYDEEVISEDAFYKWESSKDPAEQNGKGVALKSVTAFFTWLREAEEESE 1583

Query: 83   E 83
            +
Sbjct: 1584 D 1584

Probable component of the protein complex eIF4F, which is involved in the recognition of the mRNA cap, ATP-dependent unwinding of 5'-terminal secondary structure and recruitment of mRNA to the ribosome. Thought to be a functional homolog of EIF4G1.

Homo sapiens (taxid: 9606)

>sp|P41110|IF4G1_RABIT Eukaryotic translation initiation factor 4 gamma 1 OS=Oryctolagus cuniculus GN=EIF4G1 PE=1 SV=1

 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 1/70 (1%)

Query: 15   ELFCHSLHFPKGMLLRWFNNLYNLEIIEEEAFSKWRENISDA-YPGKGEALFQVNAWLNW 73
            +    +L  P  +L  +F+ LY+ ++++EEAF  W  +   A   GKG AL  V A+  W
Sbjct: 1331 QALVVTLEQPANLLRMFFDALYDEDVVKEEAFYSWESSKDPAEQQGKGVALKSVTAFFKW 1390

Query: 74   LAEAESEEEE 83
            L E E EE +
Sbjct: 1391 LREVEEEESD 1400

Component of the protein complex eIF4F, which is involved in the recognition of the mRNA cap, ATP-dependent unwinding of 5'-terminal secondary structure and recruitment of mRNA to the ribosome.

Oryctolagus cuniculus (taxid: 9986)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	88
321462381	590	hypothetical protein DAPPUDRAFT_253270 [	0.795	0.118	0.671	4e-22
195380001	933	GJ21226 [Drosophila virilis] gi|19414355	0.795	0.075	0.7	4e-22
194754521	1756	GF12927 [Drosophila ananassae] gi|190620	0.795	0.039	0.7	5e-22
332022053	976	Eukaryotic translation initiation factor	0.715	0.064	0.714	6e-22
307197021	772	Eukaryotic translation initiation factor	0.715	0.081	0.730	7e-22
357613738	876	putative eukaryotic translation initiati	0.818	0.082	0.638	7e-22
195119985	1660	GI19973 [Drosophila mojavensis] gi|19390	0.795	0.042	0.685	9e-22
307176611	863	Eukaryotic translation initiation factor	0.715	0.073	0.714	1e-21
195027974	1591	GH20303 [Drosophila grimshawi] gi|193902	0.795	0.043	0.685	1e-21
345489014	926	PREDICTED: eukaryotic translation initia	0.738	0.070	0.692	2e-21

>gi|321462381|gb|EFX73405.1| hypothetical protein DAPPUDRAFT_253270 [Daphnia pulex]

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 47/70 (67%), Positives = 60/70 (85%)

Query: 15  ELFCHSLHFPKGMLLRWFNNLYNLEIIEEEAFSKWRENISDAYPGKGEALFQVNAWLNWL 74
           + FCH L+FPKGMLLRWF  LY+LEIIEE+AF KW+E+++D  PGKG+ALFQVN WL WL
Sbjct: 518 QAFCHGLNFPKGMLLRWFVLLYDLEIIEEDAFLKWKEDLTDDTPGKGKALFQVNNWLMWL 577

Query: 75  AEAESEEEEE 84
            +AES+E+E+
Sbjct: 578 EQAESDEDED 587

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195380001|ref|XP_002048759.1| GJ21226 [Drosophila virilis] gi|194143556|gb|EDW59952.1| GJ21226 [Drosophila virilis]

 Score =  108 bits (270), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 49/70 (70%), Positives = 58/70 (82%)

Query: 15  ELFCHSLHFPKGMLLRWFNNLYNLEIIEEEAFSKWRENISDAYPGKGEALFQVNAWLNWL 74
           +LFC++ +FPKGML RWF  LY+ EIIEEEAF  W+E ISD YPGKG ALFQVNAWL WL
Sbjct: 864 QLFCYNENFPKGMLCRWFKYLYDSEIIEEEAFVLWKEEISDKYPGKGSALFQVNAWLTWL 923

Query: 75  AEAESEEEEE 84
            EAESE++E+
Sbjct: 924 QEAESEDDED 933

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194754521|ref|XP_001959543.1| GF12927 [Drosophila ananassae] gi|190620841|gb|EDV36365.1| GF12927 [Drosophila ananassae]

 Score =  108 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 49/70 (70%), Positives = 57/70 (81%)

Query: 15   ELFCHSLHFPKGMLLRWFNNLYNLEIIEEEAFSKWRENISDAYPGKGEALFQVNAWLNWL 74
            ++FC+S +FPKGML RWF  LY  EIIEEEAF  W+E ISD YPGKG ALFQVNAWL WL
Sbjct: 1687 QVFCYSENFPKGMLCRWFKYLYESEIIEEEAFVSWKEEISDTYPGKGTALFQVNAWLTWL 1746

Query: 75   AEAESEEEEE 84
             EAESE++E+
Sbjct: 1747 QEAESEDDED 1756

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332022053|gb|EGI62378.1| Eukaryotic translation initiation factor 4 gamma 2 [Acromyrmex echinatior]

 Score =  107 bits (268), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 45/63 (71%), Positives = 56/63 (88%)

Query: 15  ELFCHSLHFPKGMLLRWFNNLYNLEIIEEEAFSKWRENISDAYPGKGEALFQVNAWLNWL 74
           ++FC S +FPKG+LLRWF  LYNLE+IEEEA+ KWR+ ++DAYPGKG+ALFQVN+WL WL
Sbjct: 901 QVFCFSHNFPKGLLLRWFIALYNLEVIEEEAYHKWRDTVTDAYPGKGKALFQVNSWLTWL 960

Query: 75  AEA 77
           AEA
Sbjct: 961 AEA 963

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307197021|gb|EFN78393.1| Eukaryotic translation initiation factor 4 gamma 2 [Harpegnathos saltator]

 Score =  107 bits (268), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 46/63 (73%), Positives = 56/63 (88%)

Query: 15  ELFCHSLHFPKGMLLRWFNNLYNLEIIEEEAFSKWRENISDAYPGKGEALFQVNAWLNWL 74
           ++FC S +FPKG+LLRWF  LYNLE+IEEEA+ KWRE ++DAYPGKG+ALFQVN+WL WL
Sbjct: 697 QVFCFSHNFPKGLLLRWFIALYNLEVIEEEAYHKWREAVTDAYPGKGKALFQVNSWLTWL 756

Query: 75  AEA 77
           AEA
Sbjct: 757 AEA 759

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357613738|gb|EHJ68697.1| putative eukaryotic translation initiation factor 4 gamma, 2 [Danaus plexippus]

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 46/72 (63%), Positives = 58/72 (80%)

Query: 15  ELFCHSLHFPKGMLLRWFNNLYNLEIIEEEAFSKWRENISDAYPGKGEALFQVNAWLNWL 74
           ++  H   +PKGMLLRWF  LYNLE+ EE+AF +WRE+++DAYPGKGEALFQVN WL WL
Sbjct: 805 QVHAHHHRYPKGMLLRWFMYLYNLEVCEEDAFLRWREDVTDAYPGKGEALFQVNTWLTWL 864

Query: 75  AEAESEEEEEEE 86
            + ESE+EE E+
Sbjct: 865 QQQESEDEEAED 876

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195119985|ref|XP_002004509.1| GI19973 [Drosophila mojavensis] gi|193909577|gb|EDW08444.1| GI19973 [Drosophila mojavensis]

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 48/70 (68%), Positives = 57/70 (81%)

Query: 15   ELFCHSLHFPKGMLLRWFNNLYNLEIIEEEAFSKWRENISDAYPGKGEALFQVNAWLNWL 74
            + FC++ +FPKGML RWF  LY+ EIIEEEAF  W+E ISD YPGKG ALFQVNAWL WL
Sbjct: 1591 QTFCYNENFPKGMLCRWFKYLYDFEIIEEEAFVLWKEEISDKYPGKGSALFQVNAWLTWL 1650

Query: 75   AEAESEEEEE 84
             EAESE++E+
Sbjct: 1651 QEAESEDDED 1660

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307176611|gb|EFN66079.1| Eukaryotic translation initiation factor 4 gamma 2 [Camponotus floridanus]

 Score =  107 bits (267), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 45/63 (71%), Positives = 55/63 (87%)

Query: 15  ELFCHSLHFPKGMLLRWFNNLYNLEIIEEEAFSKWRENISDAYPGKGEALFQVNAWLNWL 74
           ++FC S +FPKG+LLRWF  LYNLE+IEEEA+ KWR+ ++DAYPGKG+ALFQVN WL WL
Sbjct: 788 QVFCFSHNFPKGLLLRWFIALYNLEVIEEEAYHKWRDTVTDAYPGKGKALFQVNTWLTWL 847

Query: 75  AEA 77
           AEA
Sbjct: 848 AEA 850

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195027974|ref|XP_001986857.1| GH20303 [Drosophila grimshawi] gi|193902857|gb|EDW01724.1| GH20303 [Drosophila grimshawi]

 Score =  106 bits (265), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 48/70 (68%), Positives = 57/70 (81%)

Query: 15   ELFCHSLHFPKGMLLRWFNNLYNLEIIEEEAFSKWRENISDAYPGKGEALFQVNAWLNWL 74
            +L C++ +FPKGML RWF  LY+ EIIEEEAF  W+E ISD YPGKG ALFQVNAWL WL
Sbjct: 1522 QLLCYNENFPKGMLCRWFKYLYDSEIIEEEAFVLWKEEISDKYPGKGSALFQVNAWLTWL 1581

Query: 75   AEAESEEEEE 84
             EAESE++E+
Sbjct: 1582 QEAESEDDED 1591

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345489014|ref|XP_001600649.2| PREDICTED: eukaryotic translation initiation factor 4 gamma 2-like [Nasonia vitripennis]

 Score =  106 bits (264), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 45/65 (69%), Positives = 57/65 (87%)

Query: 15  ELFCHSLHFPKGMLLRWFNNLYNLEIIEEEAFSKWRENISDAYPGKGEALFQVNAWLNWL 74
           ++FC SL+FPKGMLLRWF  LY+L II+E+AF +W+E+++DAYPGKG+ALFQVNAWL WL
Sbjct: 848 QVFCLSLNFPKGMLLRWFIALYDLSIIDEDAFMRWKEDVNDAYPGKGDALFQVNAWLTWL 907

Query: 75  AEAES 79
           AE  S
Sbjct: 908 AEQPS 912

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	88
FB|FBgn0010488	1526	NAT1 "NAT1" [Drosophila melano	0.681	0.039	0.6	8.5e-15
UNIPROTKB|O73777	73	EIF4G2 "Eukaryotic translation	0.681	0.821	0.5	6.2e-14
RGD|1305294	426	Eif4g2 "eukaryotic translation	0.681	0.140	0.5	5.6e-13
UNIPROTKB|F1NQU7	864	EIF4G2 "Eukaryotic translation	0.681	0.069	0.5	1.2e-12
UNIPROTKB|H0Y3P2	869	EIF4G2 "Eukaryotic translation	0.681	0.069	0.5	1.2e-12
UNIPROTKB|F1P4A7	902	EIF4G2 "Eukaryotic translation	0.681	0.066	0.5	1.2e-12
UNIPROTKB|F2Z4C6	907	EIF4G2 "Eukaryotic translation	0.681	0.066	0.5	1.2e-12
UNIPROTKB|Q95L46	907	EIF4G2 "Eukaryotic translation	0.681	0.066	0.5	1.2e-12
UNIPROTKB|D3DQV9	907	EIF4G2 "Eukaryotic translation	0.681	0.066	0.5	1.2e-12
UNIPROTKB|P78344	907	EIF4G2 "Eukaryotic translation	0.681	0.066	0.5	1.2e-12

FB|FBgn0010488 NAT1 "NAT1" [Drosophila melanogaster (taxid:7227)]

 Score = 203 (76.5 bits), Expect = 8.5e-15, P = 8.5e-15
 Identities = 36/60 (60%), Positives = 41/60 (68%)

Query:    15 ELFCHSLHFPKGMLLRWFNNLYNLXXXXXXAFSKWRENISDAYPGKGEALFQVNAWLNWL 74
             + FC++ +FPKGML RWF  LY        AF  W+E ISD YPGKG ALFQVNAWL WL
Sbjct:  1457 QTFCYNENFPKGMLCRWFKYLYESEIIEEEAFVLWKEEISDKYPGKGSALFQVNAWLTWL 1516

GO:0005845 "mRNA cap binding complex" evidence=ISS

GO:0003743 "translation initiation factor activity" evidence=ISS

GO:0035071 "salivary gland cell autophagic cell death" evidence=IEP

GO:0048102 "autophagic cell death" evidence=IEP

GO:0003677 "DNA binding" evidence=IEA

GO:0016070 "RNA metabolic process" evidence=IEA

GO:0046331 "lateral inhibition" evidence=IMP

UNIPROTKB|O73777 EIF4G2 "Eukaryotic translation initiation factor 4 gamma 2" [Gallus gallus (taxid:9031)]

 Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
 Identities = 30/60 (50%), Positives = 44/60 (73%)

Query:    15 ELFCHSLHFPKGMLLRWFNNLYNLXXXXXXAFSKWRENISDAYPGKGEALFQVNAWLNWL 74
             ++ C++ +FPKGMLLR+F + Y++      AF  W+E+I+  +PGKG+ALFQVN WL WL
Sbjct:     1 QVHCYNSNFPKGMLLRFFVHFYDMEIIEEEAFLAWKEDITQEFPGKGKALFQVNQWLTWL 60

GO:0016070 "RNA metabolic process" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0006417 "regulation of translation" evidence=IEA

RGD|1305294 Eif4g2 "eukaryotic translation initiation factor 4, gamma 2" [Rattus norvegicus (taxid:10116)]

 Score = 178 (67.7 bits), Expect = 5.6e-13, P = 5.6e-13
 Identities = 30/60 (50%), Positives = 43/60 (71%)

Query:    15 ELFCHSLHFPKGMLLRWFNNLYNLXXXXXXAFSKWRENISDAYPGKGEALFQVNAWLNWL 74
             ++ C++  FPKGMLLR+F + Y++      AF  W+E+I+  +PGKG+ALFQVN WL WL
Sbjct:   354 QVHCYNSSFPKGMLLRFFVHFYDMEIIEEEAFLAWKEDITQEFPGKGKALFQVNQWLTWL 413

GO:0003743 "translation initiation factor activity" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0006446 "regulation of translational initiation" evidence=ISO

GO:0008135 "translation factor activity, nucleic acid binding" evidence=ISO

GO:0016281 "eukaryotic translation initiation factor 4F complex" evidence=ISO

UNIPROTKB|F1NQU7 EIF4G2 "Eukaryotic translation initiation factor 4 gamma 2" [Gallus gallus (taxid:9031)]

 Score = 180 (68.4 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 30/60 (50%), Positives = 44/60 (73%)

Query:    15 ELFCHSLHFPKGMLLRWFNNLYNLXXXXXXAFSKWRENISDAYPGKGEALFQVNAWLNWL 74
             ++ C++ +FPKGMLLR+F + Y++      AF  W+E+I+  +PGKG+ALFQVN WL WL
Sbjct:   792 QVHCYNSNFPKGMLLRFFVHFYDMEIIEEEAFLAWKEDITQEFPGKGKALFQVNQWLTWL 851

GO:0003677 "DNA binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0016070 "RNA metabolic process" evidence=IEA

UNIPROTKB|H0Y3P2 EIF4G2 "Eukaryotic translation initiation factor 4 gamma 2" [Homo sapiens (taxid:9606)]

 Score = 180 (68.4 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 30/60 (50%), Positives = 44/60 (73%)

Query:    15 ELFCHSLHFPKGMLLRWFNNLYNLXXXXXXAFSKWRENISDAYPGKGEALFQVNAWLNWL 74
             ++ C++ +FPKGMLLR+F + Y++      AF  W+E+I+  +PGKG+ALFQVN WL WL
Sbjct:   797 QVHCYNSNFPKGMLLRFFVHFYDMEIIEEEAFLAWKEDITQEFPGKGKALFQVNQWLTWL 856

GO:0003677 "DNA binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0016070 "RNA metabolic process" evidence=IEA

UNIPROTKB|F1P4A7 EIF4G2 "Eukaryotic translation initiation factor 4 gamma 2" [Gallus gallus (taxid:9031)]

 Score = 180 (68.4 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 30/60 (50%), Positives = 44/60 (73%)

Query:    15 ELFCHSLHFPKGMLLRWFNNLYNLXXXXXXAFSKWRENISDAYPGKGEALFQVNAWLNWL 74
             ++ C++ +FPKGMLLR+F + Y++      AF  W+E+I+  +PGKG+ALFQVN WL WL
Sbjct:   830 QVHCYNSNFPKGMLLRFFVHFYDMEIIEEEAFLAWKEDITQEFPGKGKALFQVNQWLTWL 889

GO:0003677 "DNA binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0016070 "RNA metabolic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|F2Z4C6 EIF4G2 "Eukaryotic translation initiation factor 4 gamma 2" [Bos taurus (taxid:9913)]

 Score = 180 (68.4 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 30/60 (50%), Positives = 44/60 (73%)

Query:    15 ELFCHSLHFPKGMLLRWFNNLYNLXXXXXXAFSKWRENISDAYPGKGEALFQVNAWLNWL 74
             ++ C++ +FPKGMLLR+F + Y++      AF  W+E+I+  +PGKG+ALFQVN WL WL
Sbjct:   835 QVHCYNSNFPKGMLLRFFVHFYDMEIIEEEAFLAWKEDITQEFPGKGKALFQVNQWLTWL 894

GO:0005737 "cytoplasm" evidence=IEA

GO:0016070 "RNA metabolic process" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|Q95L46 EIF4G2 "Eukaryotic translation initiation factor 4 gamma 2" [Bos taurus (taxid:9913)]

 Score = 180 (68.4 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 30/60 (50%), Positives = 44/60 (73%)

Query:    15 ELFCHSLHFPKGMLLRWFNNLYNLXXXXXXAFSKWRENISDAYPGKGEALFQVNAWLNWL 74
             ++ C++ +FPKGMLLR+F + Y++      AF  W+E+I+  +PGKG+ALFQVN WL WL
Sbjct:   835 QVHCYNSNFPKGMLLRFFVHFYDMEIIEEEAFLAWKEDITQEFPGKGKALFQVNQWLTWL 894

GO:0006446 "regulation of translational initiation" evidence=ISS

GO:0008135 "translation factor activity, nucleic acid binding" evidence=ISS

GO:0016281 "eukaryotic translation initiation factor 4F complex" evidence=ISS

GO:0003743 "translation initiation factor activity" evidence=ISS

GO:0016070 "RNA metabolic process" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|D3DQV9 EIF4G2 "Eukaryotic translation initiation factor 4 gamma 2" [Homo sapiens (taxid:9606)]

 Score = 180 (68.4 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 30/60 (50%), Positives = 44/60 (73%)

Query:    15 ELFCHSLHFPKGMLLRWFNNLYNLXXXXXXAFSKWRENISDAYPGKGEALFQVNAWLNWL 74
             ++ C++ +FPKGMLLR+F + Y++      AF  W+E+I+  +PGKG+ALFQVN WL WL
Sbjct:   835 QVHCYNSNFPKGMLLRFFVHFYDMEIIEEEAFLAWKEDITQEFPGKGKALFQVNQWLTWL 894

GO:0003677 "DNA binding" evidence=IEA

GO:0016070 "RNA metabolic process" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|P78344 EIF4G2 "Eukaryotic translation initiation factor 4 gamma 2" [Homo sapiens (taxid:9606)]

 Score = 180 (68.4 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 30/60 (50%), Positives = 44/60 (73%)

Query:    15 ELFCHSLHFPKGMLLRWFNNLYNLXXXXXXAFSKWRENISDAYPGKGEALFQVNAWLNWL 74
             ++ C++ +FPKGMLLR+F + Y++      AF  W+E+I+  +PGKG+ALFQVN WL WL
Sbjct:   835 QVHCYNSNFPKGMLLRFFVHFYDMEIIEEEAFLAWKEDITQEFPGKGKALFQVNQWLTWL 894

GO:0003677 "DNA binding" evidence=IEA

GO:0016070 "RNA metabolic process" evidence=IEA

GO:0016281 "eukaryotic translation initiation factor 4F complex" evidence=IDA

GO:0003743 "translation initiation factor activity" evidence=IDA

GO:0006446 "regulation of translational initiation" evidence=IDA

GO:0008135 "translation factor activity, nucleic acid binding" evidence=IDA

GO:0007050 "cell cycle arrest" evidence=TAS

GO:0008219 "cell death" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0019221 "cytokine-mediated signaling pathway" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q95L46	IF4G2_BOVIN	No assigned EC number	0.6	0.6818	0.0661	yes	N/A
P79398	IF4G2_RABIT	No assigned EC number	0.6	0.6818	0.0661	yes	N/A
Q5R7J9	IF4G2_PONAB	No assigned EC number	0.6	0.6818	0.0661	yes	N/A
Q62448	IF4G2_MOUSE	No assigned EC number	0.6	0.6818	0.0662	yes	N/A
P78344	IF4G2_HUMAN	No assigned EC number	0.6	0.6818	0.0661	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	88
cd11559	134	cd11559, W2_eIF4G1_like, C-terminal W2 domain of e	3e-17
smart00515	83	smart00515, eIF5C, Domain at the C-termini of GCD6	3e-13
pfam02020	75	pfam02020, W2, eIF4-gamma/eIF5/eIF2-epsilon	7e-13
cd11558	169	cd11558, W2_eIF2B_epsilon, C-terminal W2 domain of	5e-06
cd11561	157	cd11561, W2_eIF5, C-terminal W2 domain of eukaryot	7e-05

>gnl|CDD|211397 cd11559, W2_eIF4G1_like, C-terminal W2 domain of eukaryotic translation initiation factor 4 gamma 1 and similar proteins

 Score = 70.4 bits (173), Expect = 3e-17
 Identities = 22/41 (53%), Positives = 32/41 (78%)

Query: 16  LFCHSLHFPKGMLLRWFNNLYNLEIIEEEAFSKWRENISDA 56
              H+L FPKG+LLR+F+ LY+ ++IEEEAF KW+E++  A
Sbjct: 94  ALVHTLEFPKGLLLRFFDALYDEDVIEEEAFLKWKEDVDPA 134

eIF4G1 is a component of the multi-subunit eukaryotic translation initiation factor 4F, which facilitates recruitment of the mRNA to the ribosome, a rate-limiting step during translation initiation. This C-terminal domain, whose structure resembles that of a set of concatenated HEAT repeats, has been associated with binding to/recruiting the kinase Mnk1, which phosphorylates eIF4E. Length = 134

>gnl|CDD|214705 smart00515, eIF5C, Domain at the C-termini of GCD6, eIF-2B epsilon, eIF-4 gamma and eIF-5

 Score = 58.8 bits (143), Expect = 3e-13
 Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 15 ELFCHSLHFPKGMLLRWFNNLYNLEIIEEEAFSKWRENISDAYPGKGEALFQVNAWLNWL 74
          E FC  L     +L +   +LY+ +I+EEEA  KW E    A  GK +       ++ WL
Sbjct: 22 EEFCVELEKLGKLLPKILKSLYDADILEEEAILKWYEKAVSA-EGKKKVRKNAKPFVTWL 80

Query: 75 AEA 77
           EA
Sbjct: 81 QEA 83

Length = 83

>gnl|CDD|216850 pfam02020, W2, eIF4-gamma/eIF5/eIF2-epsilon

 Score = 57.6 bits (140), Expect = 7e-13
 Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 4/66 (6%)

Query: 15 ELFCHSLHFP-KGMLLRWFNNLYNLEIIEEEAFSKWRENISDAYPGKGEALF--QVNAWL 71
          E FC   +     +L +    LY+L+I+EEEA  KW E       G+G      Q   ++
Sbjct: 11 ERFCGKENPELIKLLPKILKLLYDLDILEEEAILKWYEKSKKV-DGEGSKKVRKQAKPFV 69

Query: 72 NWLAEA 77
           WL EA
Sbjct: 70 TWLEEA 75

This domain of unknown function is found at the C-terminus of several translation initiation factors. Length = 75

>gnl|CDD|211396 cd11558, W2_eIF2B_epsilon, C-terminal W2 domain of eukaryotic translation initiation factor 2B epsilon

 Score = 41.9 bits (99), Expect = 5e-06
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)

Query: 35  LYNLEIIEEEAFSKWRENISDAY-PGKGEALFQVNAWLNWLAEAESEEE 82
           LY+L+I+EEEA  +W E           +    V  ++ WL EAE E +
Sbjct: 121 LYDLDILEEEAILEWWEEPDAGADEEMKKVRELVKKFIEWLEEAEEESD 169

eIF2B is a heteropentameric complex which functions as a guanine nucleotide exchange factor in the recycling of eIF-2 during the initiation of translation in eukaryotes. The epsilon and gamma subunits are sequence similar and both are essential in yeast. Epsilon appears to be the catalytically active subunit, with gamma enhancing its activity. The C-terminal domain of the eIF2B epsilon subunit contains bipartite motifs rich in acidic and aromatic residues, which are responsible for the interaction with eIF2. The structure of the domain resembles that of a set of concatenated HEAT repeats. Length = 169

>gnl|CDD|211399 cd11561, W2_eIF5, C-terminal W2 domain of eukaryotic translation initiation factor 5

 Score = 38.4 bits (90), Expect = 7e-05
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 3/51 (5%)

Query: 35  LYNLEIIEEEAFSKWRENISDAYPGKG---EALFQVNAWLNWLAEAESEEE 82
           LY+ +I+EEE   KW E +S  Y  K    +       ++ WL EAE EEE
Sbjct: 107 LYDNDILEEEVILKWYEKVSKKYVSKEKSKKVRKAAEPFVEWLEEAEEEEE 157

eIF5 functions as a GTPase acceleration protein (GAP), as well as a GDP dissociation inhibitor (GDI) during translational initiation in eukaryotes. The structure of this C-terminal domain resembles that of a set of concatenated HEAT repeats. Length = 157

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	88
PF02020	84	W2: eIF4-gamma/eIF5/eIF2-epsilon; InterPro: IPR003	99.95
smart00515	83	eIF5C Domain at the C-termini of GCD6, eIF-2B epsi	99.9
KOG2297|consensus	412		99.77
KOG2767|consensus	400		99.72
KOG1461|consensus	673		99.68

>PF02020 W2: eIF4-gamma/eIF5/eIF2-epsilon; InterPro: IPR003307 This entry represents the W2 domain (two invariant tryptophans) and is a region of ~165 amino acids which is found in the C terminus of the following eIFs [, , , ]: Eukaryotic translation initiation factor 2B epsilon (eIF-2B-epsilon) Eukaryotic translation initiation factor 4 gamma (eIF-4-gamma) Eukaryotic translation initiation factor 5 (eIF-5), a GTPase-activating protein (GAP) specific for eIF2 Translation initiation is a sophisticated, well regulated and highly coordinated cellular process in eukaryotes, in which at least 11 eukayrotic initiation factors (eIFs) are included []

Probab=99.95  E-value=5e-28  Score=150.39  Aligned_cols=80  Identities=28%  Similarity=0.479  Sum_probs=63.2

Q ss_pred             ChHHHHHHHHHHHhhcCCChHHHHHHHHHHHhhhccChhHHHHHHhccCC--CCCcHHHHHHHHHHHHHHhcccccCccc
Q psy8137           6 NTPPTATPPELFCHSLHFPKGMLLRWFNNLYNLEIIEEEAFSKWRENISD--AYPGKGEALFQVNAWLNWLAEAESEEEE   83 (88)
Q Consensus         6 ~~~~~L~alq~~c~~~~~~~~~~~~il~~LYd~DiveEe~il~W~~~~~~--~~~~~~~~~~~~~~fv~WL~eaeeEs~e   83 (88)
                      .|++||.|||.||.++..+.+.|++||+.||+.|||+|++|++||++.+.  ..+++.++|++++|||+||++|+|||++
T Consensus         3 ~Q~~~L~ale~~~~~~~~~~~~~~~il~~LYd~Dil~Eeail~W~~~~~~~~~~~~~~~~r~~~~~fi~WL~eaeeE~~e   82 (84)
T PF02020_consen    3 DQVDLLNALEEFCAENPNLMPLFPKILQQLYDEDILEEEAILEWYEDSKPAVDGEGRAKVRKQAQPFIEWLEEAEEESDE   82 (84)
T ss_dssp             HHHHHHHHHHHHHHHTCGHGGHHHHHHHHHHHTTSS-HHHHHHHHHC-SSSSCHHHHHHHHHHHHHHHHHHHHCC-----
T ss_pred             HHHHHHHHHHHHHHhCccHHHHHHHHHHHHhhhhhccHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhccCccCCC
Confidence            59999999999999987778999999999999999999999999998322  1234566899999999999999999887


Q ss_pred             cc
Q psy8137          84 EE   85 (88)
Q Consensus        84 e~   85 (88)
                      +|
T Consensus        83 ed   84 (84)
T PF02020_consen   83 ED   84 (84)
T ss_dssp             --
T ss_pred             CC
Confidence            54

The W2 domain has a globular fold and is exclusively composed out of alpha-helices [, , ]. The structure can be divided into a structural C-terminal core onto which the two N-terminal helices are attached. The core contains two aromatic/acidic residue-rich regions (AA boxes), which are important for mediating protein-protein interactions. For example, the W2 domain of H. sapiens eIF5 binds eIF2-beta, eIF3 and eIF1 [], and therefore plays an important role in multifactor complex assembly. The entry covers the entire W2 domain.; GO: 0005488 binding; PDB: 3D3M_A 3L6A_A 1PAQ_A 2FUL_D 2IU1_A 1UG3_B 3JUI_A.

>smart00515 eIF5C Domain at the C-termini of GCD6, eIF-2B epsilon, eIF-4 gamma and eIF-5

Probab=99.90  E-value=4.6e-24  Score=131.95  Aligned_cols=72  Identities=29%  Similarity=0.461  Sum_probs=65.5

Q ss_pred             CChHHHHHHHHHHHhhcCCChHHHHHHHHHHHhhhccChhHHHHHHhccCCCCCcHHHHHHHHHHHHHHhccc
Q psy8137           5 PNTPPTATPPELFCHSLHFPKGMLLRWFNNLYNLEIIEEEAFSKWRENISDAYPGKGEALFQVNAWLNWLAEA   77 (88)
Q Consensus         5 ~~~~~~L~alq~~c~~~~~~~~~~~~il~~LYd~DiveEe~il~W~~~~~~~~~~~~~~~~~~~~fv~WL~ea   77 (88)
                      ..|+++|+|||.||.+.+.+.+.++.||+.||+.|||+|++|++||++.+. .+++.+++++++|||+||++|
T Consensus        12 ~~q~~~L~ale~~~~~~~~~~~~~~~il~~LYd~dileEe~il~W~~~~~~-~~~~~~~~~~~~~fv~WL~eA   83 (83)
T smart00515       12 EEQIDLLYAIEEFCVELEKLIKLLPKILKSLYDADILEEEAILKWYEKAVS-AEGKKKVRKNAKPFVTWLQEA   83 (83)
T ss_pred             HHHHHHHHHHHHHHHHcchHHHHHHHHHHHHhhhccccHHHHHHHHHcCCC-hHHHHHHHHHHhHHHHHHHcC
Confidence            479999999999999977788999999999999999999999999998763 346788999999999999986

>KOG2297|consensus

Probab=99.77  E-value=7.2e-19  Score=132.30  Aligned_cols=79  Identities=23%  Similarity=0.340  Sum_probs=73.2

Q ss_pred             CCCChHHHHHHHHHHHhhcCCChHHHHHHHHHHHhhhccChhHHHHHHhccCCCCCcHHHHHHHHHHHHHHhcccccCcc
Q psy8137           3 PGPNTPPTATPPELFCHSLHFPKGMLLRWFNNLYNLEIIEEEAFSKWRENISDAYPGKGEALFQVNAWLNWLAEAESEEE   82 (88)
Q Consensus         3 ~~~~~~~~L~alq~~c~~~~~~~~~~~~il~~LYd~DiveEe~il~W~~~~~~~~~~~~~~~~~~~~fv~WL~eaeeEs~   82 (88)
                      .|.+-+.+|+.+|.||+++-+.++.|++|+..||..||++|+.|++||.++.... |+.+..++.+|||+||++|||||+
T Consensus       334 ~g~sEL~Ll~KvQe~CYen~~fMKaFqkiV~lfYk~dVLsEe~IL~Wyk~gh~~K-Gk~~FleqmkkFVeWL~~AEEEsE  412 (412)
T KOG2297|consen  334 QGQSELELLLKVQEYCYENIHFMKAFQKIVVLFYKADVLSEETILKWYKEGHVAK-GKSVFLEQMKKFVEWLQNAEEESE  412 (412)
T ss_pred             CChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhccccc-cHHHHHHHHHHHHHHHHhhhhccC
Confidence            4777889999999999998888999999999999999999999999999987664 889999999999999999999874

>KOG2767|consensus

Probab=99.72  E-value=1.1e-17  Score=126.57  Aligned_cols=83  Identities=29%  Similarity=0.416  Sum_probs=70.0

Q ss_pred             CChHHHHHHHHHHHhhcC-CChHHHHHHHHHHHhhhccChhHHHHHHhccCCCCCcH---HHHHHHHHHHHHHhcccccC
Q psy8137           5 PNTPPTATPPELFCHSLH-FPKGMLLRWFNNLYNLEIIEEEAFSKWRENISDAYPGK---GEALFQVNAWLNWLAEAESE   80 (88)
Q Consensus         5 ~~~~~~L~alq~~c~~~~-~~~~~~~~il~~LYd~DiveEe~il~W~~~~~~~~~~~---~~~~~~~~~fv~WL~eaeeE   80 (88)
                      +.|+-+|.+|+.+|..+. -..+.++.||+.||+.||++|+.|+.|+.+++.+++++   .++++.++|||+||++||++
T Consensus       313 k~qr~LLggiE~~~~~~~~el~~kva~ilk~lYd~DI~~e~vi~~w~~K~skk~vsk~~sk~i~e~a~Pfi~WL~~AESe  392 (400)
T KOG2767|consen  313 KAQRYLLGGIERFVEKHEAELISKVAGILKELYDEDILEEEVIIKWGEKPSKKYVSKEKSKKIRENAKPFIEWLKNAESE  392 (400)
T ss_pred             HHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcccccccchhhhhhhHhhhhHHHHHHHhcccc
Confidence            349999999999998843 23568899999999999999999999999999876554   34799999999999999877


Q ss_pred             ccccccc
Q psy8137          81 EEEEEEE   87 (88)
Q Consensus        81 s~ee~ed   87 (88)
                      ++++|+|
T Consensus       393 ~eeEedd  399 (400)
T KOG2767|consen  393 DEEEEDD  399 (400)
T ss_pred             ccccccC
Confidence            7776654

>KOG1461|consensus

Probab=99.68  E-value=7.2e-17  Score=128.91  Aligned_cols=80  Identities=23%  Similarity=0.310  Sum_probs=68.5

Q ss_pred             ChHHHHHHHHHHHhhcCCChHHHHHHHHHHHhhhccChhHHHHHHhccCCCCCcHHHHHHHHHHHHHHhcccccCccccc
Q psy8137           6 NTPPTATPPELFCHSLHFPKGMLLRWFNNLYNLEIIEEEAFSKWRENISDAYPGKGEALFQVNAWLNWLAEAESEEEEEE   85 (88)
Q Consensus         6 ~~~~~L~alq~~c~~~~~~~~~~~~il~~LYd~DiveEe~il~W~~~~~~~~~~~~~~~~~~~~fv~WL~eaeeEs~ee~   85 (88)
                      .|+++|.+||.+|.+.+...+.+.++++.||+.||++|++|++|+...+...+...+.+.++++||+||++|+|||++||
T Consensus       594 eqid~l~~led~~~e~~~~~~~~~~~v~~lY~~dil~EdaI~~W~~~~~~~~~~~~~~~~~~k~fv~WL~easeE~~~ee  673 (673)
T KOG1461|consen  594 EQIDLLLALEDKCVESEELGPKAAKLVHYLYDYDILQEDAILSWSSQKAGDDEEDAVYNQQLKKFVDWLKEASEEEESEE  673 (673)
T ss_pred             HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhHhhHHHHHHhhhccccchHHHHHHHHHHHHHHHHHhhcccccccCC
Confidence            59999999999999988778899999999999999999999999988433322234578889999999999999987754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	88
3l6a_A	364	Crystal Structure Of The C-Terminal Region Of Human		1e-14
3d3m_A	168	The Crystal Structure Of The C-Terminal Region Of D		5e-14

>pdb|3L6A|A Chain A, Crystal Structure Of The C-Terminal Region Of Human P97 Length = 364

Iteration: 1
 Score = 74.3 bits (181), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 44/60 (73%)
Query: 15  ELFCHSLHFPKGMLLRWFNNLYNLXXXXXXAFSKWRENISDAYPGKGEALFQVNAWLNWL 74
           ++ C++ +FPKGMLLR+F + Y++      AF  W+E+I+  +PGKG+ALFQVN WL WL
Sbjct: 302 QVHCYNSNFPKGMLLRFFVHFYDMEIIEEEAFLAWKEDITQEFPGKGKALFQVNQWLTWL 361

>pdb|3D3M|A Chain A, The Crystal Structure Of The C-Terminal Region Of Death Associated Protein 5(Dap5) Length = 168

Iteration: 1
 Score = 72.8 bits (177), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 30/60 (50%), Positives = 44/60 (73%)
Query: 15  ELFCHSLHFPKGMLLRWFNNLYNLXXXXXXAFSKWRENISDAYPGKGEALFQVNAWLNWL 74
           ++ C++ +FPKGMLLR+F + Y++      AF  W+E+I+  +PGKG+ALFQVN WL WL
Sbjct: 106 QVHCYNSNFPKGMLLRFFVHFYDMEIIEEEAFLAWKEDITQEFPGKGKALFQVNQWLTWL 165

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	88
3d3m_A	168	Eukaryotic translation initiation factor 4 gamma 2	2e-20
3l6a_A	364	Eukaryotic translation initiation factor 4 gamma;	3e-20
3jui_A	182	Translation initiation factor EIF-2B subunit EPSI;	8e-15
1paq_A	189	Translation initiation factor EIF-2B epsilon subun	1e-14
2iu1_A	208	EIF5, eukaryotic translation initiation factor 5;	9e-11
2ful_A	177	EIF-5, eukaryotic translation initiation factor 5;	1e-10
1ug3_A	339	EIF4GI, eukaryotic protein synthesis initiation fa	2e-10

>3d3m_A Eukaryotic translation initiation factor 4 gamma 2; heat repeat domain, structural genomics, PSI, protein structure initiative; 1.90A {Homo sapiens} Length = 168

 Score = 78.6 bits (193), Expect = 2e-20
 Identities = 37/63 (58%), Positives = 51/63 (80%)

Query: 15  ELFCHSLHFPKGMLLRWFNNLYNLEIIEEEAFSKWRENISDAYPGKGEALFQVNAWLNWL 74
           ++ C++ +FPKGMLLR+F + Y++EIIEEEAF  W+E+I+  +PGKG+ALFQVN WL WL
Sbjct: 106 QVHCYNSNFPKGMLLRFFVHFYDMEIIEEEAFLAWKEDITQEFPGKGKALFQVNQWLTWL 165

Query: 75  AEA 77
             A
Sbjct: 166 ETA 168

>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens} Length = 364

 Score = 81.9 bits (201), Expect = 3e-20
 Identities = 37/63 (58%), Positives = 51/63 (80%)

Query: 15  ELFCHSLHFPKGMLLRWFNNLYNLEIIEEEAFSKWRENISDAYPGKGEALFQVNAWLNWL 74
           ++ C++ +FPKGMLLR+F + Y++EIIEEEAF  W+E+I+  +PGKG+ALFQVN WL WL
Sbjct: 302 QVHCYNSNFPKGMLLRFFVHFYDMEIIEEEAFLAWKEDITQEFPGKGKALFQVNQWLTWL 361

Query: 75  AEA 77
             A
Sbjct: 362 ETA 364

>3jui_A Translation initiation factor EIF-2B subunit EPSI; heat repeat, guanine nucleotide exchange factor, disease mutation, leukodystrophy; 2.00A {Homo sapiens} Length = 182

 Score = 64.7 bits (157), Expect = 8e-15
 Identities = 16/72 (22%), Positives = 25/72 (34%), Gaps = 1/72 (1%)

Query: 15  ELFCHSLHFPKGMLLRWFNNLYNLEIIEEEAFSKWRENISD-AYPGKGEALFQVNAWLNW 73
           E F          + +     Y LEI+  E    W           +     Q+  ++ W
Sbjct: 111 EDFFLEHEALGISMAKVLMAFYQLEILAGETILSWFSQRDTTDKGQQLRKNQQLQRFIQW 170

Query: 74  LAEAESEEEEEE 85
           L EAE E  E++
Sbjct: 171 LKEAEEESSEDD 182

>1paq_A Translation initiation factor EIF-2B epsilon subunit; heat repeat, AA motif; 2.30A {Saccharomyces cerevisiae} SCOP: a.118.1.14 Length = 189

 Score = 64.6 bits (157), Expect = 1e-14
 Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 3/74 (4%)

Query: 15  ELFCHSLHFPKGM--LLRWFNNLYNLEIIEEEAFSKWRENISDAYPGKGEALFQVNAWLN 72
                   F K    L     +LY+ +IIEE+   KW +N+S   P   E       W+ 
Sbjct: 117 MEKIVEQSFDKPDLILFSALVSLYDNDIIEEDVIYKWWDNVSTD-PRYDEVKKLTVKWVE 175

Query: 73  WLAEAESEEEEEEE 86
           WL  A+ E   EEE
Sbjct: 176 WLQNADEESSSEEE 189

>2iu1_A EIF5, eukaryotic translation initiation factor 5; MFC, GTP-binding, phosphorylation, protein biosynthesis, translation inititation; 1.8A {Homo sapiens} Length = 208

 Score = 54.3 bits (130), Expect = 9e-11
 Identities = 19/77 (24%), Positives = 30/77 (38%), Gaps = 3/77 (3%)

Query: 15  ELFCHSLHFPKGMLLRWFNNLYNLEIIEEEAFSKWRENISDAYPGKG---EALFQVNAWL 71
            +           +      +Y+ +++EEE    W E  S  Y  K    E   +   ++
Sbjct: 89  CVVAMHQAQLISKIPHILKEMYDADLLEEEVIISWSEKASKKYVSKELAKEIRVKAEPFI 148

Query: 72  NWLAEAESEEEEEEEEN 88
            WL EAE E    EEE+
Sbjct: 149 KWLKEAEEESSGGEEED 165

>2ful_A EIF-5, eukaryotic translation initiation factor 5; atypical heat motif; 1.50A {Saccharomyces cerevisiae} Length = 177

 Score = 53.6 bits (128), Expect = 1e-10
 Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 3/77 (3%)

Query: 15  ELFCHSLHFPKGMLLRWFNNLYNLEIIEEEAFSKWRENISDAYPGKGEA---LFQVNAWL 71
                       +L +    LYN +II EE   ++    S  +  K  +         ++
Sbjct: 95  RFLGLEHKDLIPLLPKILVQLYNNDIISEEEIMRFGTKSSKKFVPKEVSKKVRRAAKPFI 154

Query: 72  NWLAEAESEEEEEEEEN 88
            WL  AES+++EE++E 
Sbjct: 155 TWLETAESDDDEEDDEL 171

>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 Length = 339

 Score = 54.1 bits (129), Expect = 2e-10
 Identities = 11/40 (27%), Positives = 22/40 (55%)

Query: 17  FCHSLHFPKGMLLRWFNNLYNLEIIEEEAFSKWRENISDA 56
              +L  P  +L  +F+ LY+ ++++E+AF  W  +   A
Sbjct: 299 LVVTLEQPPNLLRMFFDALYDEDVVKEDAFYSWESSKDPA 338

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	88
2ful_A	177	EIF-5, eukaryotic translation initiation factor 5;	99.93
3jui_A	182	Translation initiation factor EIF-2B subunit EPSI;	99.92
1paq_A	189	Translation initiation factor EIF-2B epsilon subun	99.92
2iu1_A	208	EIF5, eukaryotic translation initiation factor 5;	99.91
3d3m_A	168	Eukaryotic translation initiation factor 4 gamma 2	99.89
3l6a_A	364	Eukaryotic translation initiation factor 4 gamma;	99.83
1ug3_A	339	EIF4GI, eukaryotic protein synthesis initiation fa	99.31
3c5t_B	31	Exendin-4, exenatide; ligand-bound G protein-coupl	85.49

>2ful_A EIF-5, eukaryotic translation initiation factor 5; atypical heat motif; 1.50A {Saccharomyces cerevisiae}

Probab=99.93  E-value=2.1e-26  Score=159.40  Aligned_cols=84  Identities=23%  Similarity=0.305  Sum_probs=64.7

Q ss_pred             CChHHHHHHHHHHHh-hcCCChHHHHHHHHHHHhhhccChhHHHHHHhccCCCC---CcHHHHHHHHHHHHHHhcccccC
Q psy8137           5 PNTPPTATPPELFCH-SLHFPKGMLLRWFNNLYNLEIIEEEAFSKWRENISDAY---PGKGEALFQVNAWLNWLAEAESE   80 (88)
Q Consensus         5 ~~~~~~L~alq~~c~-~~~~~~~~~~~il~~LYd~DiveEe~il~W~~~~~~~~---~~~~~~~~~~~~fv~WL~eaeeE   80 (88)
                      ..|+++|+|||.||. ++..+.+.|+.||+.||+.|||+|++|++||+++++++   .+..++|++++|||+||++||||
T Consensus        84 ~~q~~lL~ale~~~~~~~~~~~~~~~~IL~~LYd~DIleEeaIl~W~~~~skk~v~~e~~~~v~~~~~pFI~WL~eAEEE  163 (177)
T 2ful_A           84 EYEKNFMGGIERFLGLEHKDLIPLLPKILVQLYNNDIISEEEIMRFGTKSSKKFVPKEVSKKVRRAAKPFITWLETAESD  163 (177)
T ss_dssp             HHHHHHHHHHHHHHHTTCGGGGGGHHHHHHHHHHTTSSCHHHHHHHHHCCCSSSSCHHHHHHHHHTTHHHHHHHHHCC--
T ss_pred             HHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHhccchhhhHHHHHHHhcCCcccCChHHHHHHHHHHHHHHHHHHccccc
Confidence            469999999999995 66666789999999999999999999999998876433   24456899999999999999998


Q ss_pred             cccccccC
Q psy8137          81 EEEEEEEN   88 (88)
Q Consensus        81 s~ee~ed~   88 (88)
                      ||+++||+
T Consensus       164 seeeeee~  171 (177)
T 2ful_A          164 DDEEDDEL  171 (177)
T ss_dssp             -------C
T ss_pred             cccccccc
Confidence            88776653

>3jui_A Translation initiation factor EIF-2B subunit EPSI; heat repeat, guanine nucleotide exchange factor, disease mutation, leukodystrophy; 2.00A {Homo sapiens} SCOP: a.118.1.0

Probab=99.92  E-value=5.3e-26  Score=157.47  Aligned_cols=81  Identities=21%  Similarity=0.321  Sum_probs=65.4

Q ss_pred             CChHHHHHHHHHHHhhcCCChHHHHHHHHHHHhhhccChhHHHHHHhccCCCCCcHH-HHHHHHHHHHHHhcccccCccc
Q psy8137           5 PNTPPTATPPELFCHSLHFPKGMLLRWFNNLYNLEIIEEEAFSKWRENISDAYPGKG-EALFQVNAWLNWLAEAESEEEE   83 (88)
Q Consensus         5 ~~~~~~L~alq~~c~~~~~~~~~~~~il~~LYd~DiveEe~il~W~~~~~~~~~~~~-~~~~~~~~fv~WL~eaeeEs~e   83 (88)
                      +.|+++|+|||.||.+...+.+.|+.||+.||+.|||+|++|++||++.++...|+. .+|++++|||+||++||||||+
T Consensus       101 ~~q~~lL~ale~~~~~~~~~~~~~~~il~~LYd~DileEe~Il~W~~~~~~~~~~~~~~vr~~~~~Fi~WL~eAEEEs~e  180 (182)
T 3jui_A          101 ADHLEALAAIEDFFLEHEALGISMAKVLMAFYQLEILAGETILSWFSQRDTTDKGQQLRKNQQLQRFIQWLKEAEEESSE  180 (182)
T ss_dssp             HHHHHHHHHHHHHHHHCGGGGGGHHHHHHHHHHTTSSCHHHHHHHHTCCC--CHHHHHTTCHHHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHHHHHHhCchHHHHHHHHHHHHhhcchhchHHHHHHHHcCCccccchHHHHHHHHHHHHHHHhccCcccCC
Confidence            469999999999999877778899999999999999999999999998775543443 3789999999999999999876


Q ss_pred             cc
Q psy8137          84 EE   85 (88)
Q Consensus        84 e~   85 (88)
                      ||
T Consensus       181 e~  182 (182)
T 3jui_A          181 DD  182 (182)
T ss_dssp             --
T ss_pred             CC
Confidence            43

>1paq_A Translation initiation factor EIF-2B epsilon subunit; heat repeat, AA motif; 2.30A {Saccharomyces cerevisiae} SCOP: a.118.1.14

Probab=99.92  E-value=3e-25  Score=154.22  Aligned_cols=82  Identities=27%  Similarity=0.356  Sum_probs=63.2

Q ss_pred             CCChHHHHHHHHHHHh--hcCCChHHHHHHHHHHHhhhccChhHHHHHHhccCCCCCcHHHHHHHHHHHHHHhcccccCc
Q psy8137           4 GPNTPPTATPPELFCH--SLHFPKGMLLRWFNNLYNLEIIEEEAFSKWRENISDAYPGKGEALFQVNAWLNWLAEAESEE   81 (88)
Q Consensus         4 ~~~~~~~L~alq~~c~--~~~~~~~~~~~il~~LYd~DiveEe~il~W~~~~~~~~~~~~~~~~~~~~fv~WL~eaeeEs   81 (88)
                      .+.|+++|+|||.||.  +.....+.|+.||+.||+.|||+|++|++||++++....+ .+++++++|||+||++|||||
T Consensus       106 ~~~q~~lL~ale~~~~~~~~~~~~~~~~~il~~LYd~DileEe~il~W~~~~~~~~~~-~~v~~~~~~Fi~WL~eAEeEs  184 (189)
T 1paq_A          106 EEEYIDLMNIIMEKIVEQSFDKPDLILFSALVSLYDNDIIEEDVIYKWWDNVSTDPRY-DEVKKLTVKWVEWLQNADEES  184 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSSCHHHHHHHHHTCCCCGGG-HHHHHHHHHHHHHHHHTC---
T ss_pred             cHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHhccccccccHHHHHHHhCCCchHHH-HHHHHHHHHHHHHHhccCccc
Confidence            3569999999999999  5554567999999999999999999999999887532222 378999999999999999988


Q ss_pred             ccccc
Q psy8137          82 EEEEE   86 (88)
Q Consensus        82 ~ee~e   86 (88)
                      |+|||
T Consensus       185 ~~eee  189 (189)
T 1paq_A          185 SSEEE  189 (189)
T ss_dssp             -----
T ss_pred             cccCC
Confidence            76543

>2iu1_A EIF5, eukaryotic translation initiation factor 5; MFC, GTP-binding, phosphorylation, protein biosynthesis, translation inititation; 1.8A {Homo sapiens}

Probab=99.91  E-value=6e-25  Score=155.42  Aligned_cols=81  Identities=22%  Similarity=0.360  Sum_probs=67.5

Q ss_pred             CChHHHHHHHHHHHhhcC-CChHHHHHHHHHHHhhhccChhHHHHHHhccCCCCCcH--H-HHHHHHHHHHHHhcccccC
Q psy8137           5 PNTPPTATPPELFCHSLH-FPKGMLLRWFNNLYNLEIIEEEAFSKWRENISDAYPGK--G-EALFQVNAWLNWLAEAESE   80 (88)
Q Consensus         5 ~~~~~~L~alq~~c~~~~-~~~~~~~~il~~LYd~DiveEe~il~W~~~~~~~~~~~--~-~~~~~~~~fv~WL~eaeeE   80 (88)
                      +.|+.+|+|||.||.... .+.+.|+.||+.||+.|||+|++|++||++++++++++  . ++|++++|||+||++||||
T Consensus        78 ~~Q~~lL~alE~~~~~~~~~~~~~~~~IL~~LYD~DIleEEaIl~W~~~~s~~~~~~e~~k~v~~~~~pFI~WL~EAEEE  157 (208)
T 2iu1_A           78 KAQRYLLHGLECVVAMHQAQLISKIPHILKEMYDADLLEEEVIISWSEKASKKYVSKELAKEIRVKAEPFIKWLKEAEEE  157 (208)
T ss_dssp             HHHHHHHHHHHHHHHHTHHHHGGGHHHHHHHHHHTTSSCHHHHHHHHHSCCCSSSCHHHHHHHHHHHHHHHHHHHCSSCC
T ss_pred             HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhccchhhhHHHHHHHhcCCcccccHHHHHHHHHHHHHHHHHHHccccc
Confidence            459999999999985532 35679999999999999999999999999877654433  2 4799999999999999998


Q ss_pred             ccccc
Q psy8137          81 EEEEE   85 (88)
Q Consensus        81 s~ee~   85 (88)
                      ||+++
T Consensus       158 s~eee  162 (208)
T 2iu1_A          158 SSGGE  162 (208)
T ss_dssp             CCCCC
T ss_pred             ccccc
Confidence            76533

>3d3m_A Eukaryotic translation initiation factor 4 gamma 2; heat repeat domain, structural genomics, PSI, protein structure initiative; 1.90A {Homo sapiens}

Probab=99.89  E-value=4.3e-23  Score=140.93  Aligned_cols=73  Identities=51%  Similarity=1.003  Sum_probs=67.6

Q ss_pred             CChHHHHHHHHHHHhhcCCChHHHHHHHHHHHhhhccChhHHHHHHhccCCCCCcHHHHHHHHHHHHHHhccc
Q psy8137           5 PNTPPTATPPELFCHSLHFPKGMLLRWFNNLYNLEIIEEEAFSKWRENISDAYPGKGEALFQVNAWLNWLAEA   77 (88)
Q Consensus         5 ~~~~~~L~alq~~c~~~~~~~~~~~~il~~LYd~DiveEe~il~W~~~~~~~~~~~~~~~~~~~~fv~WL~ea   77 (88)
                      ..|++||+|||.||.++.++.+.|+.||+.||+.|||+||+|++||++++++.+|+.+++++++|||+||++|
T Consensus        96 ~~q~~lL~alq~~~~~~~~~~~~~~~il~~LYd~DvleEe~il~W~~~~~~~~~~~~~~~~~~~~Fi~WL~eA  168 (168)
T 3d3m_A           96 DLQVSALYALQVHCYNSNFPKGMLLRFFVHFYDMEIIEEEAFLAWKEDITQEFPGKGKALFQVNQWLTWLETA  168 (168)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHTTSSCHHHHHHHHHCCSCCCTTHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHhCccHHHHHHHHHHHHhhcchhhHHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHhcC
Confidence            4699999999999999888999999999999999999999999999987655667888999999999999986

>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}

Probab=99.83  E-value=1.1e-20  Score=142.01  Aligned_cols=72  Identities=51%  Similarity=1.020  Sum_probs=67.3

Q ss_pred             ChHHHHHHHHHHHhhcCCChHHHHHHHHHHHhhhccChhHHHHHHhccCCCCCcHHHHHHHHHHHHHHhccc
Q psy8137           6 NTPPTATPPELFCHSLHFPKGMLLRWFNNLYNLEIIEEEAFSKWRENISDAYPGKGEALFQVNAWLNWLAEA   77 (88)
Q Consensus         6 ~~~~~L~alq~~c~~~~~~~~~~~~il~~LYd~DiveEe~il~W~~~~~~~~~~~~~~~~~~~~fv~WL~ea   77 (88)
                      .|++||+|||.||.+.++|.+.++.||+.||+.|||+||+|++||++.++..+|+++++++++|||+||+||
T Consensus       293 ~q~~~L~alq~~~~~~~~~~~~l~~il~~LYd~DileEe~il~W~~~~~~~~~~k~~~~~~~~~Fi~WL~eA  364 (364)
T 3l6a_A          293 LQVSALYALQVHCYNSNFPKGMLLRFFVHFYDMEIIEEEAFLAWKEDITQEFPGKGKALFQVNQWLTWLETA  364 (364)
T ss_dssp             HHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHTTSSCHHHHHHHHHCCCCSSTTHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhcC
Confidence            499999999999999888888999999999999999999999999988766778899999999999999986

>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14

Probab=99.31  E-value=1.7e-12  Score=95.92  Aligned_cols=49  Identities=20%  Similarity=0.470  Sum_probs=45.1

Q ss_pred             CChHHHHHHHHHHHhhcCCChHHHHHHHHHHHhhhccChhHHHHHHhcc
Q psy8137           5 PNTPPTATPPELFCHSLHFPKGMLLRWFNNLYNLEIIEEEAFSKWRENI   53 (88)
Q Consensus         5 ~~~~~~L~alq~~c~~~~~~~~~~~~il~~LYd~DiveEe~il~W~~~~   53 (88)
                      ..|++||+|||.||+++.+|+++|..+++.||+.|||+||+|++||++.
T Consensus       287 ~~ql~~L~alQ~~~~~~~~~~~~l~~~~~~LYd~dVi~Eeail~W~~~~  335 (339)
T 1ug3_A          287 QKELQALYALQALVVTLEQPPNLLRMFFDALYDEDVVKEDAFYSWESSK  335 (339)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHTTSSCHHHHHHHTC--
T ss_pred             HHHHHHHHHHHHHHHhccChHHHHHHHHHHHhCcchhhHHHHHHHHhcC
Confidence            4689999999999999999999999999999999999999999999763

>3c5t_B Exendin-4, exenatide; ligand-bound G protein-coupled receptor extracellular domain protein coupled receptor, glycoprotein, membrane; HET: 10M; 2.10A {Homo sapiens} SCOP: j.6.1.1 PDB: 3c59_B*

Probab=85.49  E-value=0.44  Score=23.81  Aligned_cols=14  Identities=21%  Similarity=0.527  Sum_probs=10.9

Q ss_pred             HHHHHHHHHHhccc
Q psy8137          64 LFQVNAWLNWLAEA   77 (88)
Q Consensus        64 ~~~~~~fv~WL~ea   77 (88)
                      -++++.||.||.+.
T Consensus         8 ~~aakdFv~WL~ng   21 (31)
T 3c5t_B            8 EEAVRLFIEWLKNG   21 (31)
T ss_dssp             HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhC
Confidence            34588999999854

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	88
d1paqa_	161	a.118.1.14 (A:) Translation initiation factor eIF-	8e-16
d1ug3a2	127	a.118.1.14 (A:1438-1564) Eukaryotic initiation fac	5e-11

>d1paqa_ a.118.1.14 (A:) Translation initiation factor eIF-2b epsilon {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 161

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: MIF4G domain-like
domain: Translation initiation factor eIF-2b epsilon
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 65.7 bits (160), Expect = 8e-16
 Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 3/66 (4%)

Query: 15  ELFCHSLHFPKGM--LLRWFNNLYNLEIIEEEAFSKWRENISDAYPGKGEALFQVNAWLN 72
                   F K    L     +LY+ +IIEE+   KW +N+S   P   E       W+ 
Sbjct: 97  MEKIVEQSFDKPDLILFSALVSLYDNDIIEEDVIYKWWDNVSTD-PRYDEVKKLTVKWVE 155

Query: 73  WLAEAE 78
           WL  A+
Sbjct: 156 WLQNAD 161

>d1ug3a2 a.118.1.14 (A:1438-1564) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]} Length = 127

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: MIF4G domain-like
domain: Eukaryotic initiation factor eIF4G
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.6 bits (126), Expect = 5e-11
 Identities = 10/35 (28%), Positives = 21/35 (60%)

Query: 15  ELFCHSLHFPKGMLLRWFNNLYNLEIIEEEAFSKW 49
           +    +L  P  +L  +F+ LY+ ++++E+AF  W
Sbjct: 93  QALVVTLEQPPNLLRMFFDALYDEDVVKEDAFYSW 127

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	88
d1paqa_	161	Translation initiation factor eIF-2b epsilon {Bake	99.84
d1ug3a2	127	Eukaryotic initiation factor eIF4G {Human (Homo sa	99.43

>d1paqa_ a.118.1.14 (A:) Translation initiation factor eIF-2b epsilon {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: MIF4G domain-like
domain: Translation initiation factor eIF-2b epsilon
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.84  E-value=2.6e-21  Score=129.57  Aligned_cols=73  Identities=26%  Similarity=0.384  Sum_probs=64.2

Q ss_pred             CChHHHHHHHHHHHhhcCCCh--HHHHHHHHHHHhhhccChhHHHHHHhccCCCCCcHHHHHHHHHHHHHHhcccc
Q psy8137           5 PNTPPTATPPELFCHSLHFPK--GMLLRWFNNLYNLEIIEEEAFSKWRENISDAYPGKGEALFQVNAWLNWLAEAE   78 (88)
Q Consensus         5 ~~~~~~L~alq~~c~~~~~~~--~~~~~il~~LYd~DiveEe~il~W~~~~~~~~~~~~~~~~~~~~fv~WL~eae   78 (88)
                      ..|.+||+++|.||.+..++.  +.|+.||+.||+.|||+||+|++||++.+.. +++.+++++++|||+||++||
T Consensus        87 ~~q~~~L~~lq~~c~~~~~~~~~~~~~~il~~lY~~dii~Ed~i~~W~~~~~~~-~~~~~~~~~~~~fv~WL~~ae  161 (161)
T d1paqa_          87 EEYIDLMNIIMEKIVEQSFDKPDLILFSALVSLYDNDIIEEDVIYKWWDNVSTD-PRYDEVKKLTVKWVEWLQNAD  161 (161)
T ss_dssp             HHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSSCHHHHHHHHHTCCCC-GGGHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHhhchhcHHHHHHHHHcCCCc-hHHHHHHHHHHHHHHHHHhCC
Confidence            469999999999999866554  4799999999999999999999999886654 467889999999999999986

>d1ug3a2 a.118.1.14 (A:1438-1564) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: MIF4G domain-like
domain: Eukaryotic initiation factor eIF4G
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=6.5e-14  Score=90.05  Aligned_cols=45  Identities=22%  Similarity=0.516  Sum_probs=43.3

Q ss_pred             CChHHHHHHHHHHHhhcCCChHHHHHHHHHHHhhhccChhHHHHH
Q psy8137           5 PNTPPTATPPELFCHSLHFPKGMLLRWFNNLYNLEIIEEEAFSKW   49 (88)
Q Consensus         5 ~~~~~~L~alq~~c~~~~~~~~~~~~il~~LYd~DiveEe~il~W   49 (88)
                      ..|++||+|+|.||.+..+|+++|+.||+.||+.|||+||+|++|
T Consensus        83 ~~ql~~L~~lQ~~~~~~~~~~~~~~~i~~~LYd~dvi~Ee~i~~W  127 (127)
T d1ug3a2          83 QKELQALYALQALVVTLEQPPNLLRMFFDALYDEDVVKEDAFYSW  127 (127)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHTTSSCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhccccccHHhhccC
Confidence            359999999999999999999999999999999999999999999