Psyllid ID: psy8149

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180--
Protein Sequence
VGDIFLAAGTAFNKLADLTLQLHSTPDSPSGNKWTAEDIEMLKETVRKFGDELVIISDRIKDRTISQIKSNLKKKAFEDAGLPIQQQVAPPQQIVQQVVQQQHQQVVQAPQMVQTPTRVVQQTVATVPVPVSAQQQLLSGSHKSAEVTLNMLNAHPESEVDVEGLPEEVKLQFDTTAQQVAN
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHccccccccccccccccccEEccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccEEHHHccccccccEEEcccccccEEccccccHHHcc
Coil and Loop (DISEMBL)
VGDIFLAAGTAFNKLADLTLqlhstpdspsgnkwtAEDIEMLKETVRKFGDELVIISDRIKDRTISQIKSNLKkkafedaglpiqqqvappqQIVQQVVQQQHQQVvqapqmvqtptRVVQQTvatvpvpvsaqqqllsgshKSAEVTLNMLnahpesevdveglpeevkLQFDTTAQQVAN
Flexible Loop (DISEMBL)
VGDIFLAAGTAFNKLADLTLQLhstpdspsgnkwTAEDIEMLKETVRKfgdelviisdrikdrtisQIKSNLKKKAFEDAGLPIQQQVAPPQQIVQQVVQQQHQQVVQAPQMVQTPTRVVQQTVATVPVPVSAQQQLLSGSHKSAEVTLNMLNAHPESEVDVEGLPEEVKLQFDTTAQQVAN
Low Complexity Region (SEG)
VGDIFLAAGTAFNKLADLTLQLHSTPDSPSGNKWTAEDIEMLKETVRKFGDELVIISDRIKDRTISQIKSNLKKKAFEDAGLpiqqqvappqqivqqvvqqqhqqvvqapqmvqtptrvvqqtvatvpvpvsaqqqLLSGSHKSAEVTLNMLNAHPESEVDVEGLPEEVKLQFDTTAQQVAN
Disordered region (IsUnstruct)
***IFLAAGTAFNKLADLTLQL***********WTAEDIEMLKETVRKFGDELVIISDRIKDRTISQI**************************************************VVQQTVATV*******************************************************
Disordered Region (DISOPRED)
VGDIFLAAGTAFNKLADLTLQL****************IEMLKETVRKFGDELVIISDRIK****************************************************************************************NMLNAHPESEVDVEGLPEEVK************
Disordered Region (DISEMBL)
VGDIFLAAGTAFNKLADLTLQLHS********KWTAEDIEMLKETVRKFGDELVIISDRIKDRTISQIKSNLKKKAFEDAGLPIQQQVAP******************APQMVQTPTRVVQQTVATVPVPVSAQQQLLSGSHKSAEVTLNMLNAHPESEVDVEGLPEEVKLQFDTTAQQVAN
Disordered Region (DISPRO)
VGDIFLAAGTAFNKLADLTLQLHSTP***SGNKWTAEDIEMLKETVRKFGDELVIISDRIKDRTISQIKSNLKKKAFEDAGLPIQ************************************************************EVTL*MLNAHPESEVDVEGLPEEVKLQFDT*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
VGDIFLAAGTAFNKLADLTLQLHSTPDSPSGNKWTAEDIEMLKETVRKFGDELVIISDRIKDRTISQIKSNLKKKAFEDAGLPIQQQVAPPQQIVQQVVQQQHQQVVQAPQMVQTPTRVVQQTVATVPVPVSAQQQLLSGSHKSAEVTLNMLNAHPESEVDVEGLPEEVKLQFDTTAQQVAN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	182	2.2.26 [Sep-21-2011]
Q9DCT6	171	Chromatin complexes subun	no	N/A	0.840	0.894	0.393	2e-23
Q8IXM2	172	Chromatin complexes subun	yes	N/A	0.846	0.895	0.387	7e-23
Q32LD1	172	Chromatin complexes subun	yes	N/A	0.846	0.895	0.387	4e-22

>sp|Q9DCT6|BAP18_MOUSE Chromatin complexes subunit BAP18 OS=Mus musculus GN=Bap18 PE=1 SV=1

 Score =  108 bits (271), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/183 (39%), Positives = 106/183 (57%), Gaps = 30/183 (16%)

Query: 1   VGDIFLAAGTAFNKLADLTLQLHSTPDS-PSGNKWTAEDIEMLKETVRKFGDELVIISDR 59
           VG+IF AAG AF KL +LT+QLH   DS P+G KWT  +IEML+  V++FGD+L  IS  
Sbjct: 8   VGEIFSAAGAAFTKLGELTMQLHPVSDSSPAGAKWTETEIEMLRAAVKRFGDDLNHISCV 67

Query: 60  IKDRTISQIKSNLKKKAFEDAGLPIQQQVAP---PQQIVQQVVQQQHQQVVQAPQMVQTP 116
           IK+RT++QIK+ +K+K +ED+G+P+  + +P   P+++   V+   +     +  + +  
Sbjct: 68  IKERTVAQIKTTVKRKVYEDSGIPLPAE-SPKKGPKKMTSGVLSPPNAPPPSSSSVPE-- 124

Query: 117 TRVVQQTVATVPVPVSAQQQLLSGSHKSAEVTLNMLNAHPESE--VDVEGL---PEEVKL 171
                   A VP P+  Q+         A+VTL+ LN    +   VDVEGL   P   KL
Sbjct: 125 --------AGVP-PIKKQK---------ADVTLSALNDSDANSDLVDVEGLGETPPAKKL 166

Query: 172 QFD 174
            FD
Sbjct: 167 NFD 169

Component of chromatin complexes such as the MLL1/MLL and NURF complexes.
Mus musculus (taxid: 10090)

>sp|Q8IXM2|BAP18_HUMAN Chromatin complexes subunit BAP18 OS=Homo sapiens GN=BAP18 PE=1 SV=1

 Score =  106 bits (265), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 71/183 (38%), Positives = 103/183 (56%), Gaps = 29/183 (15%)

Query: 1   VGDIFLAAGTAFNKLADLTLQLHSTPDS-PSGNKWTAEDIEMLKETVRKFGDELVIISDR 59
           VG+IF AAG AF KL +LT+QLH   DS P+G KWT  +IEML+  V++FGD+L  IS  
Sbjct: 8   VGEIFSAAGAAFTKLGELTMQLHPVADSSPAGAKWTETEIEMLRAAVKRFGDDLNHISCV 67

Query: 60  IKDRTISQIKSNLKKKAFEDAGLPIQQQVAP---PQQIVQQVVQQQHQQVVQAPQMVQTP 116
           IK+RT++QIK+ +K+K +ED+G+P+  + +P   P+++   V+         +   V   
Sbjct: 68  IKERTVAQIKATVKRKVYEDSGIPLPAE-SPKKGPKKVASGVLSPPPAAPPPSSSSVPE- 125

Query: 117 TRVVQQTVATVPVPVSAQQQLLSGSHKSAEVTLNMLNAHPESE--VDVEGL---PEEVKL 171
                   A  P P+  Q+         A+VTL+ LN    +   VD+EGL   P   KL
Sbjct: 126 --------AGGP-PIKKQK---------ADVTLSALNDSDANSDVVDIEGLGETPPAKKL 167

Query: 172 QFD 174
            FD
Sbjct: 168 NFD 170

Component of chromatin complexes such as the MLL1/MLL and NURF complexes.

Homo sapiens (taxid: 9606)

>sp|Q32LD1|BAP18_BOVIN Chromatin complexes subunit BAP18 OS=Bos taurus GN=BAP18 PE=2 SV=1

 Score =  104 bits (259), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 71/183 (38%), Positives = 102/183 (55%), Gaps = 29/183 (15%)

Query: 1   VGDIFLAAGTAFNKLADLTLQLHSTPDS-PSGNKWTAEDIEMLKETVRKFGDELVIISDR 59
           VG+IF AAG AF KL +LT+QLH   DS P+G KWT  +IEML+  V++FGD+L  IS  
Sbjct: 8   VGEIFSAAGAAFTKLGELTMQLHPVADSSPAGAKWTETEIEMLRAAVKRFGDDLNHISCV 67

Query: 60  IKDRTISQIKSNLKKKAFEDAGLPIQQQVAP---PQQIVQQVVQQQHQQVVQAPQMVQTP 116
           IK+RT++QIK+ +K+K +ED+G+P+    +P   P+++   V+         +   V   
Sbjct: 68  IKERTVAQIKATVKRKVYEDSGIPLPAD-SPKKGPKKVASGVLSPPPTAPPPSSSSVPE- 125

Query: 117 TRVVQQTVATVPVPVSAQQQLLSGSHKSAEVTLNMLNAHPESE--VDVEGL---PEEVKL 171
                   A  P P+  Q+         A+VTL+ LN    +   VD+EGL   P   KL
Sbjct: 126 --------AGGP-PIKKQK---------ADVTLSALNDSDANSDLVDIEGLGETPPTKKL 167

Query: 172 QFD 174
            FD
Sbjct: 168 NFD 170

Component of chromatin complexes such as the MLL1/MLL and NURF complexes.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	182
350413203	187	PREDICTED: chromatin complexes subunit B	0.818	0.796	0.518	1e-37
350413200	160	PREDICTED: chromatin complexes subunit B	0.818	0.931	0.518	1e-37
345491284	160	PREDICTED: probable methyltransferase BC	0.802	0.912	0.516	2e-36
380023396	158	PREDICTED: chromatin complexes subunit B	0.824	0.949	0.516	8e-36
380023400	156	PREDICTED: chromatin complexes subunit B	0.824	0.961	0.516	8e-36
328792610	217	PREDICTED: chromatin complexes subunit B	0.818	0.686	0.5	2e-34
383856538	225	PREDICTED: chromatin complexes subunit B	0.851	0.688	0.521	8e-34
340708646	160	PREDICTED: chromatin complexes subunit B	0.835	0.95	0.516	2e-33
332373976	150	unknown [Dendroctonus ponderosae]	0.785	0.953	0.497	2e-33
307186333	187	Uncharacterized potential DNA-binding pr	0.840	0.818	0.519	4e-33

>gi|350413203|ref|XP_003489915.1| PREDICTED: chromatin complexes subunit BAP18-like isoform 2 [Bombus impatiens]

 Score =  161 bits (408), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 97/187 (51%), Positives = 121/187 (64%), Gaps = 38/187 (20%)

Query: 1   VGDIFLAAGTAFNKLADLTLQLHSTPDSPSGNKWTAEDIEMLKETVRKFGDELVIISDRI 60
           VG+IF AAG AFNKL +LT+QLH T DSP+G KWT E+IEML+ +V+ F ++L  IS+ I
Sbjct: 34  VGEIFTAAGAAFNKLGELTMQLHPTTDSPAG-KWTDEEIEMLRHSVKTFSEDLNKISEHI 92

Query: 61  KDRTISQIKSNLKKKAFEDAGLPIQQQVAPPQQIVQQVVQQQHQQVVQAPQMVQTPTRVV 120
           K RT+SQI++ LKKKAFE+AG+PI+QQ+   Q   Q  VQQ                   
Sbjct: 93  KGRTVSQIRTTLKKKAFEEAGVPIRQQMLSQQSTQQSAVQQ------------------- 133

Query: 121 QQTVATVPVPVSAQQ---QLLSGSHKSAEVTLNMLNAHPESEVDVEGLPEE--VKLQFDT 175
                     VS QQ   Q L G  KS+EVTLNMLNA PESEVDVEGLPEE  VKL+F+ 
Sbjct: 134 ----------VSKQQTGNQGLMG--KSSEVTLNMLNA-PESEVDVEGLPEECQVKLEFEG 180

Query: 176 TAQQVAN 182
             ++VA+
Sbjct: 181 ATEEVAS 187

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350413200|ref|XP_003489914.1| PREDICTED: chromatin complexes subunit BAP18-like isoform 1 [Bombus impatiens]

 Score =  161 bits (407), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 97/187 (51%), Positives = 121/187 (64%), Gaps = 38/187 (20%)

Query: 1   VGDIFLAAGTAFNKLADLTLQLHSTPDSPSGNKWTAEDIEMLKETVRKFGDELVIISDRI 60
           VG+IF AAG AFNKL +LT+QLH T DSP+G KWT E+IEML+ +V+ F ++L  IS+ I
Sbjct: 7   VGEIFTAAGAAFNKLGELTMQLHPTTDSPAG-KWTDEEIEMLRHSVKTFSEDLNKISEHI 65

Query: 61  KDRTISQIKSNLKKKAFEDAGLPIQQQVAPPQQIVQQVVQQQHQQVVQAPQMVQTPTRVV 120
           K RT+SQI++ LKKKAFE+AG+PI+QQ+   Q   Q  VQQ                   
Sbjct: 66  KGRTVSQIRTTLKKKAFEEAGVPIRQQMLSQQSTQQSAVQQ------------------- 106

Query: 121 QQTVATVPVPVSAQQ---QLLSGSHKSAEVTLNMLNAHPESEVDVEGLPEE--VKLQFDT 175
                     VS QQ   Q L G  KS+EVTLNMLNA PESEVDVEGLPEE  VKL+F+ 
Sbjct: 107 ----------VSKQQTGNQGLMG--KSSEVTLNMLNA-PESEVDVEGLPEECQVKLEFEG 153

Query: 176 TAQQVAN 182
             ++VA+
Sbjct: 154 ATEEVAS 160

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345491284|ref|XP_003426563.1| PREDICTED: probable methyltransferase BCDIN3D-like isoform 2 [Nasonia vitripennis]

 Score =  157 bits (396), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 96/186 (51%), Positives = 117/186 (62%), Gaps = 40/186 (21%)

Query: 1   VGDIFLAAGTAFNKLADLTLQLHSTPDSPSGNKWTAEDIEMLKETVRKFGDELVIISDRI 60
           VG+IF AAG AFNKL +LT+QLH T DSP+G KWT E+IEML+ +V+ F ++L  ISD I
Sbjct: 7   VGEIFTAAGAAFNKLGELTMQLHPTTDSPTG-KWTDEEIEMLRHSVKTFSEDLNKISDHI 65

Query: 61  KDRTISQIKSNLKKKAFEDAGLPIQQQV------APPQQIVQQVVQQQHQQVVQAPQMVQ 114
           K RT+ +I+S LKKKAFE+AG+P++QQ       A PQ  VQQV +Q             
Sbjct: 66  KGRTVHKIRSTLKKKAFEEAGVPMRQQQIITQQQATPQTNVQQVQKQ------------- 112

Query: 115 TPTRVVQQTVATVPVPVSAQQQLLSGSHKSAEVTLNMLNAHPESEVDVEGLPEEVKLQFD 174
                             A    L G  KSAEVTLNMLNA PESEVDVEGLPEEVKL+FD
Sbjct: 113 -----------------PASNPGLMG--KSAEVTLNMLNA-PESEVDVEGLPEEVKLEFD 152

Query: 175 TTAQQV 180
              ++V
Sbjct: 153 GATEEV 158

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380023396|ref|XP_003695509.1| PREDICTED: chromatin complexes subunit BAP18-like isoform 1 [Apis florea] gi|380023398|ref|XP_003695510.1| PREDICTED: chromatin complexes subunit BAP18-like isoform 2 [Apis florea]

 Score =  155 bits (391), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 94/182 (51%), Positives = 118/182 (64%), Gaps = 32/182 (17%)

Query: 1   VGDIFLAAGTAFNKLADLTLQLHSTPDSPSGNKWTAEDIEMLKETVRKFGDELVIISDRI 60
           VG+IF AAG AFNKL +LT+QLH T DSP+G KWT E+IEML+ +V+ F ++L  IS+ I
Sbjct: 9   VGEIFTAAGAAFNKLGELTMQLHPTTDSPAG-KWTDEEIEMLRHSVKTFSEDLNKISEHI 67

Query: 61  KDRTISQIKSNLKKKAFEDAGLPIQQQVAPPQQIVQQVVQQQHQQVVQAPQMVQTPTRVV 120
           K RT+SQI++ LKKKAFE+AG+PI+QQ+   Q   Q  VQ   QQ               
Sbjct: 68  KGRTVSQIRTTLKKKAFEEAGVPIRQQMLSQQSSQQSTVQVSKQQ--------------- 112

Query: 121 QQTVATVPVPVSAQQQLLSGSHKSAEVTLNMLNAHPESEVDVEGLPEEVKLQFDTTAQQV 180
                         Q L+    KSAEVTLNMLNA PESEVDVEGLPEEVKL+F+   ++V
Sbjct: 113 ------------GNQGLMG---KSAEVTLNMLNA-PESEVDVEGLPEEVKLEFEGATEEV 156

Query: 181 AN 182
           A+
Sbjct: 157 AS 158

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380023400|ref|XP_003695511.1| PREDICTED: chromatin complexes subunit BAP18-like isoform 3 [Apis florea] gi|380023402|ref|XP_003695512.1| PREDICTED: chromatin complexes subunit BAP18-like isoform 4 [Apis florea]

 Score =  155 bits (391), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 94/182 (51%), Positives = 118/182 (64%), Gaps = 32/182 (17%)

Query: 1   VGDIFLAAGTAFNKLADLTLQLHSTPDSPSGNKWTAEDIEMLKETVRKFGDELVIISDRI 60
           VG+IF AAG AFNKL +LT+QLH T DSP+G KWT E+IEML+ +V+ F ++L  IS+ I
Sbjct: 7   VGEIFTAAGAAFNKLGELTMQLHPTTDSPAG-KWTDEEIEMLRHSVKTFSEDLNKISEHI 65

Query: 61  KDRTISQIKSNLKKKAFEDAGLPIQQQVAPPQQIVQQVVQQQHQQVVQAPQMVQTPTRVV 120
           K RT+SQI++ LKKKAFE+AG+PI+QQ+   Q   Q  VQ   QQ               
Sbjct: 66  KGRTVSQIRTTLKKKAFEEAGVPIRQQMLSQQSSQQSTVQVSKQQ--------------- 110

Query: 121 QQTVATVPVPVSAQQQLLSGSHKSAEVTLNMLNAHPESEVDVEGLPEEVKLQFDTTAQQV 180
                         Q L+    KSAEVTLNMLNA PESEVDVEGLPEEVKL+F+   ++V
Sbjct: 111 ------------GNQGLMG---KSAEVTLNMLNA-PESEVDVEGLPEEVKLEFEGATEEV 154

Query: 181 AN 182
           A+
Sbjct: 155 AS 156

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328792610|ref|XP_392173.3| PREDICTED: chromatin complexes subunit BAP18-like isoform 1 [Apis mellifera]

 Score =  150 bits (380), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 91/182 (50%), Positives = 116/182 (63%), Gaps = 33/182 (18%)

Query: 1   VGDIFLAAGTAFNKLADLTLQLHSTPDSPSGNKWTAEDIEMLKETVRKFGDELVIISDRI 60
           VG+IF AAG AFNKL +LT+QLH T DSP+G KWT E+IEML+ +V+ F ++L  IS+ I
Sbjct: 69  VGEIFTAAGAAFNKLGELTMQLHPTTDSPAG-KWTDEEIEMLRHSVKTFSEDLNKISEHI 127

Query: 61  KDRTISQIKSNLKKKAFEDAGLPIQQQVAPPQQIVQQVVQQQHQQVVQAPQMVQTPTRVV 120
           K RT+SQI++ LKKKAFE+AG+PI+QQ+   Q   Q V   +                  
Sbjct: 128 KGRTVSQIRTTLKKKAFEEAGVPIRQQMLSQQSSQQSVQVSK------------------ 169

Query: 121 QQTVATVPVPVSAQQQLLSGSHKSAEVTLNMLNAHPESEVDVEGLPEEVKLQFDTTAQQV 180
                         Q L+    KSAEVTLNMLNA PESEVDVEGLPEEVKL+F+   ++V
Sbjct: 170 ----------QQGNQGLMG---KSAEVTLNMLNA-PESEVDVEGLPEEVKLEFEGATEEV 215

Query: 181 AN 182
           A+
Sbjct: 216 AS 217

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383856538|ref|XP_003703765.1| PREDICTED: chromatin complexes subunit BAP18-like [Megachile rotundata]

 Score =  148 bits (374), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 96/184 (52%), Positives = 121/184 (65%), Gaps = 29/184 (15%)

Query: 1   VGDIFLAAGTAFNKLADLTLQLHSTPDSPSGNKWTAEDIEMLKETVRKFGDELVIISDRI 60
           VG+IF AAG AFNKL +LT+QLH T DSP+G KWT E+IEML+ +V+ F ++L  IS+ I
Sbjct: 69  VGEIFTAAGAAFNKLGELTMQLHPTTDSPAG-KWTDEEIEMLRHSVKTFSEDLNKISEHI 127

Query: 61  KDRTISQIKSNLKKKAFEDAGLPIQQQVAPPQQIVQQVVQQQHQQVVQAPQMVQTPTRVV 120
           K RT+SQI++ LKKKAFE+AG+PI+QQ+   Q   Q  V QQ Q   Q            
Sbjct: 128 KGRTVSQIRTTLKKKAFEEAGMPIRQQMLSQQSTQQSTVVQQQQVSKQQ----------- 176

Query: 121 QQTVATVPVPVSAQQQLLSGSHKSAEVTLNMLNAHPESEVDVEGLPEE--VKLQFDTTAQ 178
                      +A Q L+    KSAEVTLNMLNA PESEVDVEGLPEE  VKL+F+   +
Sbjct: 177 -----------AANQGLMG---KSAEVTLNMLNA-PESEVDVEGLPEECQVKLEFEGATE 221

Query: 179 QVAN 182
           +VA+
Sbjct: 222 EVAS 225

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340708646|ref|XP_003392933.1| PREDICTED: chromatin complexes subunit BAP18-like isoform 1 [Bombus terrestris]

 Score =  147 bits (372), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 95/184 (51%), Positives = 121/184 (65%), Gaps = 32/184 (17%)

Query: 1   VGDIFLAAGTAFNKLADLTLQLHSTPDSPSGNKWTAEDIEMLKETVRKFGDELVIISDRI 60
           VG+IF AAG AFNKL +LT+QLH T DSP+G KWT E+IEML+ +V+ F ++L  IS+ I
Sbjct: 7   VGEIFTAAGAAFNKLGELTMQLHPTTDSPAG-KWTDEEIEMLRHSVKTFSEDLNKISEHI 65

Query: 61  KDRTISQIKSNLKKKAFEDAGLPIQQQVAPPQQIVQQVVQQQHQQVVQAPQMVQTPTRVV 120
           K RT+SQI++ LKKKAFE+AG+PI+QQ+   Q   Q  VQQ  +Q               
Sbjct: 66  KGRTVSQIRTTLKKKAFEEAGVPIRQQMLSQQSTQQSTVQQVSKQ--------------- 110

Query: 121 QQTVATVPVPVSAQQQLLSGSHKSAEVTLNMLNAHPESEVDVEGLPEE--VKLQFDTTAQ 178
            QT           Q L+    KS+EVTLNMLNA PESEVDVEGLPEE  VKL+F+   +
Sbjct: 111 -QT---------GNQGLMG---KSSEVTLNMLNA-PESEVDVEGLPEECQVKLEFEGATE 156

Query: 179 QVAN 182
           +VA+
Sbjct: 157 EVAS 160

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332373976|gb|AEE62129.1| unknown [Dendroctonus ponderosae]

 Score =  147 bits (371), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 90/181 (49%), Positives = 112/181 (61%), Gaps = 38/181 (20%)

Query: 1   VGDIFLAAGTAFNKLADLTLQLHSTPDSPSGNKWTAEDIEMLKETVRKFGDELVIISDRI 60
           VG+IF AAG AFN+L DLT+QLH   +SPSG KWT E+IEML++ V++F D L  IS+ I
Sbjct: 7   VGEIFTAAGQAFNRLGDLTMQLHPHSESPSG-KWTDEEIEMLRQVVKQFSDGLNQISEHI 65

Query: 61  KDRTISQIKSNLKKKAFEDAGLPIQQQVAPPQQIVQQVVQQQHQQVVQAPQMVQTPTRVV 120
           K RT+SQI++ LKKKAFEDAGLP++Q        V  V Q Q   V Q  Q    P+ + 
Sbjct: 66  KRRTVSQIRTALKKKAFEDAGLPVRQ--------VTTVAQSQSTLVGQTTQ----PSLMK 113

Query: 121 QQTVATVPVPVSAQQQLLSGSHKSAEVTLNMLNAHPESEVDVEGLPEEVKLQFDTTAQQV 180
           Q                        EVTLNMLNA  ESEVDVEGL EEVKL+FD + ++V
Sbjct: 114 Q------------------------EVTLNMLNA-AESEVDVEGLHEEVKLEFDGSNEEV 148

Query: 181 A 181
           +
Sbjct: 149 S 149

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307186333|gb|EFN71983.1| Uncharacterized potential DNA-binding protein C17orf49-like protein [Camponotus floridanus]

 Score =  146 bits (368), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 94/181 (51%), Positives = 116/181 (64%), Gaps = 28/181 (15%)

Query: 1   VGDIFLAAGTAFNKLADLTLQLHSTPDSPSGNKWTAEDIEMLKETVRKFGDELVIISDRI 60
           VG+IF AAG AFNKL +LT+QLH T DS +G KWT EDIEML+ +VR F +EL  IS+ I
Sbjct: 29  VGEIFTAAGVAFNKLGELTMQLHPTSDSLAG-KWTEEDIEMLRHSVRAFSEELNRISEHI 87

Query: 61  KDRTISQIKSNLKKKAFEDAGLPIQQQVAPPQQIVQQVVQQQHQQVVQAPQMVQTPTRVV 120
           K RT+SQI++ LKKKAFE+AG+ ++QQ   PQQ  Q  + QQ     Q+           
Sbjct: 88  KSRTVSQIRTTLKKKAFEEAGISVRQQQILPQQAQQSTLVQQQVVKQQS----------- 136

Query: 121 QQTVATVPVPVSAQQQLLSGSHKSAEVTLNMLNAHPESEVDVEGLPEE--VKLQFDTTAQ 178
                      S  Q L+    KSAEVTLNMLNA PE+EVDVEGLPEE  VKL+F+  A 
Sbjct: 137 ----------TSGNQSLIG---KSAEVTLNMLNA-PETEVDVEGLPEECQVKLEFEEGAT 182

Query: 179 Q 179
           +
Sbjct: 183 E 183

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	182
FB|FBgn0052831	305	CG33695 [Drosophila melanogast	0.445	0.265	0.597	4e-26
MGI|MGI:1915609	171	0610010K14Rik "RIKEN cDNA 0610	0.450	0.479	0.554	1.5e-24
RGD|1308134	181	RGD1308134 "similar to RIKEN c	0.450	0.453	0.554	1.5e-24
UNIPROTKB|Q32LD1	172	BAP18 "Chromatin complexes sub	0.450	0.476	0.554	1.9e-24
UNIPROTKB|E2R6W3	192	C17orf49 "Uncharacterized prot	0.450	0.427	0.554	1.9e-24
UNIPROTKB|F6XZR8	191	C5H17orf49 "Uncharacterized pr	0.450	0.429	0.554	1.9e-24
UNIPROTKB|C9J4G0	192	C17orf49 "Protein C17orf49" [H	0.450	0.427	0.554	1.9e-24
UNIPROTKB|H0YIS7	233	RNASEK-C17orf49 "Protein RNASE	0.450	0.351	0.554	1.9e-24
UNIPROTKB|Q8IXM2	172	BAP18 "Chromatin complexes sub	0.450	0.476	0.554	1.9e-24
UNIPROTKB|F1RFR7	192	LOC100518689 "Uncharacterized	0.450	0.427	0.554	1.9e-24

FB|FBgn0052831 CG33695 [Drosophila melanogaster (taxid:7227)]

 Score = 248 (92.4 bits), Expect = 4.0e-26, Sum P(2) = 4.0e-26
 Identities = 49/82 (59%), Positives = 64/82 (78%)

Query:     1 VGDIFLAAGTAFNKLADLTLQLHSTPDSPSGNKWTAEDIEMLKETVRKFGDELVIISDRI 60
             VG+IF AAG AF++L DLT+QLH   +SPSG KWT E+I+ML  ++ +F D+L  IS  I
Sbjct:     7 VGEIFTAAGQAFSRLGDLTMQLHPNAESPSG-KWTDEEIDMLHSSIMRFSDDLTKISLSI 65

Query:    61 KDRTISQIKSNLKKKAFEDAGL 82
             K+RT+SQI+  LKKKAFEDAG+
Sbjct:    66 KNRTVSQIRQALKKKAFEDAGI 87

GO:0003682 "chromatin binding" evidence=IEA

MGI|MGI:1915609 0610010K14Rik "RIKEN cDNA 0610010K14 gene" [Mus musculus (taxid:10090)]

 Score = 238 (88.8 bits), Expect = 1.5e-24, Sum P(2) = 1.5e-24
 Identities = 46/83 (55%), Positives = 64/83 (77%)

Query:     1 VGDIFLAAGTAFNKLADLTLQLHSTPDS-PSGNKWTAEDIEMLKETVRKFGDELVIISDR 59
             VG+IF AAG AF KL +LT+QLH   DS P+G KWT  +IEML+  V++FGD+L  IS  
Sbjct:     8 VGEIFSAAGAAFTKLGELTMQLHPVSDSSPAGAKWTETEIEMLRAAVKRFGDDLNHISCV 67

Query:    60 IKDRTISQIKSNLKKKAFEDAGL 82
             IK+RT++QIK+ +K+K +ED+G+
Sbjct:    68 IKERTVAQIKTTVKRKVYEDSGI 90

GO:0003674 "molecular_function" evidence=ND

GO:0003677 "DNA binding" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016568 "chromatin modification" evidence=IEA

GO:0016589 "NURF complex" evidence=ISO

GO:0071339 "MLL1 complex" evidence=ISO

RGD|1308134 RGD1308134 "similar to RIKEN cDNA 1110020A23" [Rattus norvegicus (taxid:10116)]

 Score = 238 (88.8 bits), Expect = 1.5e-24, Sum P(2) = 1.5e-24
 Identities = 46/83 (55%), Positives = 64/83 (77%)

Query:     1 VGDIFLAAGTAFNKLADLTLQLHSTPDS-PSGNKWTAEDIEMLKETVRKFGDELVIISDR 59
             VG+IF AAG AF KL +LT+QLH   DS P+G KWT  +IEML+  V++FGD+L  IS  
Sbjct:    18 VGEIFSAAGAAFTKLGELTMQLHPVSDSSPAGAKWTETEIEMLRAAVKRFGDDLNHISCV 77

Query:    60 IKDRTISQIKSNLKKKAFEDAGL 82
             IK+RT++QIK+ +K+K +ED+G+
Sbjct:    78 IKERTVAQIKTTVKRKVYEDSGI 100

GO:0003677 "DNA binding" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0016589 "NURF complex" evidence=ISO

GO:0071339 "MLL1 complex" evidence=ISO

UNIPROTKB|Q32LD1 BAP18 "Chromatin complexes subunit BAP18" [Bos taurus (taxid:9913)]

 Score = 238 (88.8 bits), Expect = 1.9e-24, Sum P(2) = 1.9e-24
 Identities = 46/83 (55%), Positives = 64/83 (77%)

Query:     1 VGDIFLAAGTAFNKLADLTLQLHSTPDS-PSGNKWTAEDIEMLKETVRKFGDELVIISDR 59
             VG+IF AAG AF KL +LT+QLH   DS P+G KWT  +IEML+  V++FGD+L  IS  
Sbjct:     8 VGEIFSAAGAAFTKLGELTMQLHPVADSSPAGAKWTETEIEMLRAAVKRFGDDLNHISCV 67

Query:    60 IKDRTISQIKSNLKKKAFEDAGL 82
             IK+RT++QIK+ +K+K +ED+G+
Sbjct:    68 IKERTVAQIKATVKRKVYEDSGI 90

GO:0016589 "NURF complex" evidence=ISS

GO:0071339 "MLL1 complex" evidence=ISS

GO:0016568 "chromatin modification" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

UNIPROTKB|E2R6W3 C17orf49 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 238 (88.8 bits), Expect = 1.9e-24, Sum P(2) = 1.9e-24
 Identities = 46/83 (55%), Positives = 64/83 (77%)

Query:     1 VGDIFLAAGTAFNKLADLTLQLHSTPDS-PSGNKWTAEDIEMLKETVRKFGDELVIISDR 59
             VG+IF AAG AF KL +LT+QLH   DS P+G KWT  +IEML+  V++FGD+L  IS  
Sbjct:     8 VGEIFSAAGAAFTKLGELTMQLHPVADSSPAGAKWTETEIEMLRAAVKRFGDDLNHISCV 67

Query:    60 IKDRTISQIKSNLKKKAFEDAGL 82
             IK+RT++QIK+ +K+K +ED+G+
Sbjct:    68 IKERTVAQIKATVKRKVYEDSGI 90

GO:0003682 "chromatin binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|F6XZR8 C5H17orf49 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 238 (88.8 bits), Expect = 1.9e-24, Sum P(2) = 1.9e-24
 Identities = 46/83 (55%), Positives = 64/83 (77%)

Query:     1 VGDIFLAAGTAFNKLADLTLQLHSTPDS-PSGNKWTAEDIEMLKETVRKFGDELVIISDR 59
             VG+IF AAG AF KL +LT+QLH   DS P+G KWT  +IEML+  V++FGD+L  IS  
Sbjct:     8 VGEIFSAAGAAFTKLGELTMQLHPVADSSPAGAKWTETEIEMLRAAVKRFGDDLNHISCV 67

Query:    60 IKDRTISQIKSNLKKKAFEDAGL 82
             IK+RT++QIK+ +K+K +ED+G+
Sbjct:    68 IKERTVAQIKATVKRKVYEDSGI 90

GO:0003682 "chromatin binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|C9J4G0 C17orf49 "Protein C17orf49" [Homo sapiens (taxid:9606)]

 Score = 238 (88.8 bits), Expect = 1.9e-24, Sum P(2) = 1.9e-24
 Identities = 46/83 (55%), Positives = 64/83 (77%)

Query:     1 VGDIFLAAGTAFNKLADLTLQLHSTPDS-PSGNKWTAEDIEMLKETVRKFGDELVIISDR 59
             VG+IF AAG AF KL +LT+QLH   DS P+G KWT  +IEML+  V++FGD+L  IS  
Sbjct:     8 VGEIFSAAGAAFTKLGELTMQLHPVADSSPAGAKWTETEIEMLRAAVKRFGDDLNHISCV 67

Query:    60 IKDRTISQIKSNLKKKAFEDAGL 82
             IK+RT++QIK+ +K+K +ED+G+
Sbjct:    68 IKERTVAQIKATVKRKVYEDSGI 90

GO:0003677 "DNA binding" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

UNIPROTKB|H0YIS7 RNASEK-C17orf49 "Protein RNASEK-C17orf49" [Homo sapiens (taxid:9606)]

 Score = 238 (88.8 bits), Expect = 1.9e-24, Sum P(2) = 1.9e-24
 Identities = 46/83 (55%), Positives = 64/83 (77%)

Query:     1 VGDIFLAAGTAFNKLADLTLQLHSTPDS-PSGNKWTAEDIEMLKETVRKFGDELVIISDR 59
             VG+IF AAG AF KL +LT+QLH   DS P+G KWT  +IEML+  V++FGD+L  IS  
Sbjct:    49 VGEIFSAAGAAFTKLGELTMQLHPVADSSPAGAKWTETEIEMLRAAVKRFGDDLNHISCV 108

Query:    60 IKDRTISQIKSNLKKKAFEDAGL 82
             IK+RT++QIK+ +K+K +ED+G+
Sbjct:   109 IKERTVAQIKATVKRKVYEDSGI 131

GO:0003677 "DNA binding" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

UNIPROTKB|Q8IXM2 BAP18 "Chromatin complexes subunit BAP18" [Homo sapiens (taxid:9606)]

 Score = 238 (88.8 bits), Expect = 1.9e-24, Sum P(2) = 1.9e-24
 Identities = 46/83 (55%), Positives = 64/83 (77%)

Query:     1 VGDIFLAAGTAFNKLADLTLQLHSTPDS-PSGNKWTAEDIEMLKETVRKFGDELVIISDR 59
             VG+IF AAG AF KL +LT+QLH   DS P+G KWT  +IEML+  V++FGD+L  IS  
Sbjct:     8 VGEIFSAAGAAFTKLGELTMQLHPVADSSPAGAKWTETEIEMLRAAVKRFGDDLNHISCV 67

Query:    60 IKDRTISQIKSNLKKKAFEDAGL 82
             IK+RT++QIK+ +K+K +ED+G+
Sbjct:    68 IKERTVAQIKATVKRKVYEDSGI 90

GO:0003682 "chromatin binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0016568 "chromatin modification" evidence=IEA

GO:0016589 "NURF complex" evidence=IDA

GO:0071339 "MLL1 complex" evidence=IDA

UNIPROTKB|F1RFR7 LOC100518689 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 238 (88.8 bits), Expect = 1.9e-24, Sum P(2) = 1.9e-24
 Identities = 46/83 (55%), Positives = 64/83 (77%)

Query:     1 VGDIFLAAGTAFNKLADLTLQLHSTPDS-PSGNKWTAEDIEMLKETVRKFGDELVIISDR 59
             VG+IF AAG AF KL +LT+QLH   DS P+G KWT  +IEML+  V++FGD+L  IS  
Sbjct:     8 VGEIFSAAGAAFTKLGELTMQLHPVADSSPAGAKWTETEIEMLRAAVKRFGDDLNHISCV 67

Query:    60 IKDRTISQIKSNLKKKAFEDAGL 82
             IK+RT++QIK+ +K+K +ED+G+
Sbjct:    68 IKERTVAQIKATVKRKVYEDSGI 90

GO:0003682 "chromatin binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8IXM2	BAP18_HUMAN	No assigned EC number	0.3879	0.8461	0.8953	yes	N/A
Q32LD1	BAP18_BOVIN	No assigned EC number	0.3879	0.8461	0.8953	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	182
smart00717	49	smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII	2e-04
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	0.001
cd00167	45	cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-	0.002
PLN02187	462	PLN02187, PLN02187, rooty/superroot1	0.003

>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

 Score = 37.6 bits (88), Expect = 2e-04
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 4/49 (8%)

Query: 31 GNKWTAEDIEMLKETVRKFG-DELVIISDRIKDRTISQIKS---NLKKK 75
            +WT E+ E+L E V+K+G +    I+  +  RT  Q +    NL K 
Sbjct: 1  KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWRNLLKP 49

Length = 49

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 35.2 bits (82), Expect = 0.001
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 32 NKWTAEDIEMLKETVRKFG-DELVIISDRIKDRTISQIKS 70
            WT E+ E+L E V+K G      I+  +  RT +Q K+
Sbjct: 2  GPWTPEEDELLIEAVKKHGNGNWSKIAKHLPGRTDNQCKN 41

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

 Score = 34.5 bits (80), Expect = 0.002
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 33 KWTAEDIEMLKETVRKFGDE-LVIISDRIKDRTISQIKS 70
           WT E+ E+L E V+K+G      I+  +  RT  Q + 
Sbjct: 1  PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRE 39

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45

>gnl|CDD|215119 PLN02187, PLN02187, rooty/superroot1

 Score = 37.0 bits (85), Expect = 0.003
 Identities = 16/40 (40%), Positives = 28/40 (70%), Gaps = 2/40 (5%)

Query: 26  PDSPSGNKWTAEDIEMLKETVRKFGDELVIISDRIKDRTI 65
           P++P GN ++ + ++ + ET RK G  +++ISD + DRTI
Sbjct: 213 PNNPCGNVYSHDHLKKVAETARKLG--IMVISDEVYDRTI 250

Length = 462

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	182
KOG4834|consensus	280		99.96
KOG4834|consensus	280		99.45
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	98.92
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	98.64
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	98.62
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	98.6
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	98.52
KOG1279|consensus	506		97.56
COG5259	531	RSC8 RSC chromatin remodeling complex subunit RSC8	97.56
PLN03212	249	Transcription repressor MYB5; Provisional	97.53
PLN03091	459	hypothetical protein; Provisional	97.36
KOG0048|consensus	238		97.03
PLN03212	249	Transcription repressor MYB5; Provisional	96.62
PLN03091	459	hypothetical protein; Provisional	96.04
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	95.49
KOG0049|consensus	939		93.94
COG5114	432	Histone acetyltransferase complex SAGA/ADA, subuni	92.24
KOG0457|consensus	438		91.44
KOG0048|consensus	238		91.37
COG5118	507	BDP1 Transcription initiation factor TFIIIB, Bdp1	91.31
KOG4329|consensus	445		88.41
KOG0724|consensus	335		87.72
KOG4167|consensus	907		86.78
PF09420	164	Nop16: Ribosome biogenesis protein Nop16; InterPro	85.24
KOG4468|consensus	782		84.94
TIGR01765	73	tspaseT_teng_N transposase, putative, N-terminal d	82.85
PF07750	162	GcrA: GcrA cell cycle regulator; InterPro: IPR0116	81.29
KOG2009|consensus	584		81.24

>KOG4834|consensus

Probab=99.96  E-value=7.1e-31  Score=227.28  Aligned_cols=166  Identities=16%  Similarity=0.054  Sum_probs=131.3

Q ss_pred             ChhHhhHhhHHHHHhhhhhhccccCCC-CCCC-----CCCCHHHHHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHhh
Q psy8149           1 VGDIFLAAGTAFNKLADLTLQLHSTPD-SPSG-----NKWTAEDIEMLKETVRKFGDELVIISDRIKDRTISQIKSNLKK   74 (182)
Q Consensus         1 V~EIF~aAG~AF~kLgeLTmqLh~~~d-s~~~-----~KWTdeEiemLr~aV~rFg~dL~kIS~~Ik~RTv~QIKs~lKr   74 (182)
                      |+|||.++|++|.++++++|+|||+.| ++.|     .+|++-+++||++|+++||+++|.|++++++||+.||+++.+|
T Consensus        95 V~~sf~~~q~~~~~~~~~~~~LHPv~nss~~G~~~~~~~~~q~~~~~l~AAv~~~~~taNh~~~~~~~~tiqQ~tsT~a~  174 (280)
T KOG4834|consen   95 VSNSFQQYQRGGPGGSSAMSSLHPVMNSSNNGAANNMMAMDQPAPVNLAAAVAEVFLTANHAFQKLGDLTLQQHTTTDAD  174 (280)
T ss_pred             hhhhhHHhhhccccccchheeccccccCCCccchhhhhhhccccHHHHHHHHHHHHhhcccchhhhhceeeeccccccch
Confidence            799999999999999999999999999 6666     6999999999999999999999999999999999999999999


Q ss_pred             hhhhhcCCCCCCCCCCCchhHHHHHHhhhhhhhcCCccccCCc---------ccccccccccccccccchhhcccCCCcc
Q psy8149          75 KAFEDAGLPIQQQVAPPQQIVQQVVQQQHQQVVQAPQMVQTPT---------RVVQQTVATVPVPVSAQQQLLSGSHKSA  145 (182)
Q Consensus        75 K~~edag~p~~~~~~~p~~~~k~~~~~q~k~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~l~~~k~k~a  145 (182)
                      ++|++.++++.+.+  +...++       +..++....+-.|+         +..| .+++.++++.+.++++.   +..
T Consensus       175 ~V~~~~~~~~~~~~--~~v~P~-------~sAs~~i~~VLSP~~~~~~~~~~~~nP-Passa~Vp~p~GpP~~~---~~~  241 (280)
T KOG4834|consen  175 EVKWSEKEAVIPTR--YTVAPS-------SSASTVILNVLSPPGGGGMPHLQSQNP-PASSAPVPLPRGPPTTV---TRV  241 (280)
T ss_pred             hhccccccccCCCC--ceeccc-------eeecccccccccCCCCCCCcccccCCC-CcccCCCCCCCCCCccc---eec
Confidence            99999999999988  444433       11111111111221         1111 13445677777777775   668


Q ss_pred             chhhhcccCCCCC--cccccCCCcc---cccccccchhhhcC
Q psy8149         146 EVTLNMLNAHPES--EVDVEGLPEE---VKLQFDTTAQQVAN  182 (182)
Q Consensus       146 dVTLn~LN~s~~n--~vDvEGL~e~---~KL~Fd~~~eev~~  182 (182)
                      ++++..||++|.+  +||||||++.   ||++|+   |+|+|
T Consensus       242 ~~~~~~LN~~~~~~d~VDvE~l~pt~~~Kk~~~~---e~v~~  280 (280)
T KOG4834|consen  242 VAPHTLLNQGPPIKDLVDAESLIPTSWRKKSPET---EFVKN  280 (280)
T ss_pred             cchhhhhccCCcccccccHhhcCCcchhhccchh---hhhcC
Confidence            9999999999875  8999999977   666665   56664

>KOG4834|consensus

Probab=99.45  E-value=5.6e-15  Score=128.80  Aligned_cols=68  Identities=16%  Similarity=-0.020  Sum_probs=65.2

Q ss_pred             hccccCCCCCCCCCCCHHHHHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHhhhhhhhcCCCCCCCC
Q psy8149          20 LQLHSTPDSPSGNKWTAEDIEMLKETVRKFGDELVIISDRIKDRTISQIKSNLKKKAFEDAGLPIQQQV   88 (182)
Q Consensus        20 mqLh~~~ds~~~~KWTdeEiemLr~aV~rFg~dL~kIS~~Ik~RTv~QIKs~lKrK~~edag~p~~~~~   88 (182)
                      |||||...+|++ ||+++||+||.+.+-|||+||.+||-.|+.||+.|||..+|+|+||++|+|..+..
T Consensus         1 ~q~~~~~~~p~~-~~~~~~i~~~~~s~~r~~~~~~~~sls~~~~~~~q~~~~~k~~~~~~~g~p~~q~p   68 (280)
T KOG4834|consen    1 QQQQQGGHVPPV-ASNTVTIGTSANSQVRIGPSTQIRSLSNVALRHHQPVPIRKIVHHDTGGGPQFQPP   68 (280)
T ss_pred             CCcCCCCCCCCc-cccceeecccccceEEecCcceeeeehhhhhhcccchhhhheeecccCCCcccCCC
Confidence            799999999984 99999999999999999999999999999999999999999999999999998755

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=98.92  E-value=1.9e-09  Score=70.27  Aligned_cols=43  Identities=35%  Similarity=0.581  Sum_probs=39.1

Q ss_pred             CCCCHHHHHHHHHHHHHhhhh-HHHHHHHhh-hhhHHHHHHHHhh
Q psy8149          32 NKWTAEDIEMLKETVRKFGDE-LVIISDRIK-DRTISQIKSNLKK   74 (182)
Q Consensus        32 ~KWTdeEiemLr~aV~rFg~d-L~kIS~~Ik-~RTv~QIKs~lKr   74 (182)
                      +.||++|.++|.+||..||.+ |.+|+..|. +||..|+|++..+
T Consensus         2 ~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~   46 (48)
T PF00249_consen    2 GPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQN   46 (48)
T ss_dssp             -SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHh
Confidence            689999999999999999999 999999999 9999999998654

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=98.64  E-value=6e-08  Score=59.61  Aligned_cols=43  Identities=30%  Similarity=0.554  Sum_probs=40.2

Q ss_pred             CCCCHHHHHHHHHHHHHhh-hhHHHHHHHhhhhhHHHHHHHHhh
Q psy8149          32 NKWTAEDIEMLKETVRKFG-DELVIISDRIKDRTISQIKSNLKK   74 (182)
Q Consensus        32 ~KWTdeEiemLr~aV~rFg-~dL~kIS~~Ik~RTv~QIKs~lKr   74 (182)
                      +.||++|.++|..++..|| .+|+.|+..|.+||..+|+...+.
T Consensus         2 ~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~~~   45 (49)
T smart00717        2 GEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWNN   45 (49)
T ss_pred             CCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHHHH
Confidence            5899999999999999999 999999999999999999987653

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=98.62  E-value=4.6e-08  Score=68.04  Aligned_cols=44  Identities=27%  Similarity=0.389  Sum_probs=40.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhhh-hH---HHHHHHhh-hh-hHHHHHHHHhh
Q psy8149          31 GNKWTAEDIEMLKETVRKFGD-EL---VIISDRIK-DR-TISQIKSNLKK   74 (182)
Q Consensus        31 ~~KWTdeEiemLr~aV~rFg~-dL---~kIS~~Ik-~R-Tv~QIKs~lKr   74 (182)
                      .-.||+|||..|.+||..||. ||   .+|++.|. +| |..||++|+-|
T Consensus         3 r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QK   52 (57)
T TIGR01557         3 RVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQK   52 (57)
T ss_pred             CCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHH
Confidence            457999999999999999999 99   99999987 67 99999999865

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=98.60  E-value=7e-08  Score=64.58  Aligned_cols=43  Identities=30%  Similarity=0.586  Sum_probs=37.7

Q ss_pred             CCHHHHHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHhhhh
Q psy8149          34 WTAEDIEMLKETVRKFGDELVIISDRIKDRTISQIKSNLKKKA   76 (182)
Q Consensus        34 WTdeEiemLr~aV~rFg~dL~kIS~~Ik~RTv~QIKs~lKrK~   76 (182)
                      ||++|.+.|+.++..||.+|++||.++..||..||+...++.+
T Consensus         1 WT~eEd~~L~~~~~~~g~~W~~Ia~~l~~Rt~~~~~~r~~~~l   43 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYGNDWKKIAEHLGNRTPKQCRNRWRNHL   43 (60)
T ss_dssp             S-HHHHHHHHHHHHHHTS-HHHHHHHSTTS-HHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHHCcCHHHHHHHHCcCCHHHHHHHHHHHC
Confidence            9999999999999999999999999998899999999988833

...

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=98.52  E-value=1.8e-07  Score=56.93  Aligned_cols=41  Identities=32%  Similarity=0.572  Sum_probs=38.7

Q ss_pred             CCCHHHHHHHHHHHHHhh-hhHHHHHHHhhhhhHHHHHHHHh
Q psy8149          33 KWTAEDIEMLKETVRKFG-DELVIISDRIKDRTISQIKSNLK   73 (182)
Q Consensus        33 KWTdeEiemLr~aV~rFg-~dL~kIS~~Ik~RTv~QIKs~lK   73 (182)
                      .||++|...|..++..|| .+|..|+..+..||..|||....
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~~~~   42 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWR   42 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHHHHH
Confidence            599999999999999999 99999999999999999998764

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>KOG1279|consensus

Probab=97.56  E-value=7.5e-05  Score=70.88  Aligned_cols=53  Identities=19%  Similarity=0.416  Sum_probs=46.4

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHhhhhhhhc
Q psy8149          28 SPSGNKWTAEDIEMLKETVRKFGDELVIISDRIKDRTISQIKSNLKKKAFEDA   80 (182)
Q Consensus        28 s~~~~KWTdeEiemLr~aV~rFg~dL~kIS~~Ik~RTv~QIKs~lKrK~~eda   80 (182)
                      ...++-||+.|+-.|.+||..||+||++|+.||++||..|-=.+.-|-=++|.
T Consensus       250 ~~~~~~WT~qE~lLLLE~ie~y~ddW~kVa~hVg~ks~eqCI~kFL~LPieD~  302 (506)
T KOG1279|consen  250 ESARPNWTEQETLLLLEAIEMYGDDWNKVADHVGTKSQEQCILKFLRLPIEDP  302 (506)
T ss_pred             ccCCCCccHHHHHHHHHHHHHhcccHHHHHhccCCCCHHHHHHHHHhcCccch
Confidence            34567899999999999999999999999999999999998887777665554

>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]

Probab=97.56  E-value=6.3e-05  Score=71.45  Aligned_cols=40  Identities=18%  Similarity=0.436  Sum_probs=36.9

Q ss_pred             CCCCHHHHHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHH
Q psy8149          32 NKWTAEDIEMLKETVRKFGDELVIISDRIKDRTISQIKSN   71 (182)
Q Consensus        32 ~KWTdeEiemLr~aV~rFg~dL~kIS~~Ik~RTv~QIKs~   71 (182)
                      --|+.+|.-.|.++|.+|||||++||.||++||+.|---|
T Consensus       280 k~WS~qE~~LLLEGIe~ygDdW~kVA~HVgtKt~EqCIl~  319 (531)
T COG5259         280 KNWSRQELLLLLEGIEMYGDDWDKVARHVGTKTKEQCILH  319 (531)
T ss_pred             ccccHHHHHHHHHHHHHhhhhHHHHHHHhCCCCHHHHHHH
Confidence            3699999999999999999999999999999999996544

>PLN03212 Transcription repressor MYB5; Provisional

Probab=97.53  E-value=0.0002  Score=63.01  Aligned_cols=57  Identities=23%  Similarity=0.344  Sum_probs=47.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHH---hhhhhhhcCCCCCCC
Q psy8149          31 GNKWTAEDIEMLKETVRKFGDELVIISDRIKDRTISQIKSNL---KKKAFEDAGLPIQQQ   87 (182)
Q Consensus        31 ~~KWTdeEiemLr~aV~rFg~dL~kIS~~Ik~RTv~QIKs~l---KrK~~edag~p~~~~   87 (182)
                      .+.||++|.+.|.+++..||..|.+|+..+..||-.|||..-   -||.+...|+.....
T Consensus        78 kgpWT~EED~lLlel~~~~GnKWs~IAk~LpGRTDnqIKNRWns~LrK~l~r~~i~p~~~  137 (249)
T PLN03212         78 RGGITSDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQGIDPQTH  137 (249)
T ss_pred             cCCCChHHHHHHHHHHHhccccHHHHHhhcCCCCHHHHHHHHHHHHhHHHHhcCCCCCCC
Confidence            689999999999999999999999999999999999998542   345555566655443

>PLN03091 hypothetical protein; Provisional

Probab=97.36  E-value=0.00043  Score=65.27  Aligned_cols=54  Identities=22%  Similarity=0.365  Sum_probs=46.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHH----HhhhhhhhcCCCCC
Q psy8149          31 GNKWTAEDIEMLKETVRKFGDELVIISDRIKDRTISQIKSN----LKKKAFEDAGLPIQ   85 (182)
Q Consensus        31 ~~KWTdeEiemLr~aV~rFg~dL~kIS~~Ik~RTv~QIKs~----lKrK~~edag~p~~   85 (182)
                      .+.||.+|-+.|.+.+..||..|.+|+..+..||-.+||..    +||+ +.+.||...
T Consensus        67 KgpWT~EED~lLLeL~k~~GnKWskIAk~LPGRTDnqIKNRWnslLKKk-lr~~~I~p~  124 (459)
T PLN03091         67 RGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKK-LRQRGIDPN  124 (459)
T ss_pred             CCCCCHHHHHHHHHHHHHhCcchHHHHHhcCCCCHHHHHHHHHHHHHHH-HHHcCCCCC
Confidence            68999999999999999999999999999999999999864    4444 455666543

>KOG0048|consensus

Probab=97.03  E-value=0.0013  Score=55.74  Aligned_cols=59  Identities=22%  Similarity=0.357  Sum_probs=51.7

Q ss_pred             hhccccCCCCCCCCCCCHHHHHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHH----HHhhhhhhhc
Q psy8149          19 TLQLHSTPDSPSGNKWTAEDIEMLKETVRKFGDELVIISDRIKDRTISQIKS----NLKKKAFEDA   80 (182)
Q Consensus        19 TmqLh~~~ds~~~~KWTdeEiemLr~aV~rFg~dL~kIS~~Ik~RTv~QIKs----~lKrK~~eda   80 (182)
                      +.+|.|.-.   .|.||+||-+.+.++-..||..|..|+.++=.||--.||.    ++|||+-.-.
T Consensus        53 ~NyLrP~ik---rg~fT~eEe~~Ii~lH~~~GNrWs~IA~~LPGRTDNeIKN~Wnt~lkkkl~~~~  115 (238)
T KOG0048|consen   53 TNYLRPDLK---RGNFSDEEEDLIIKLHALLGNRWSLIAGRLPGRTDNEVKNHWNTHLKKKLLKMG  115 (238)
T ss_pred             hcccCCCcc---CCCCCHHHHHHHHHHHHHHCcHHHHHHhhCCCcCHHHHHHHHHHHHHHHHHHcC
Confidence            456667544   7899999999999999999999999999999999999985    6899987665

>PLN03212 Transcription repressor MYB5; Provisional

Probab=96.62  E-value=0.002  Score=56.80  Aligned_cols=41  Identities=22%  Similarity=0.303  Sum_probs=37.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhhh-hHHHHHHHhh-hhhHHHHHHH
Q psy8149          31 GNKWTAEDIEMLKETVRKFGD-ELVIISDRIK-DRTISQIKSN   71 (182)
Q Consensus        31 ~~KWTdeEiemLr~aV~rFg~-dL~kIS~~Ik-~RTv~QIKs~   71 (182)
                      .++||.||=+.|+.+|++||. +|..|+..+. .||-.|+|..
T Consensus        25 Rg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReR   67 (249)
T PLN03212         25 RGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLR   67 (249)
T ss_pred             CCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHH
Confidence            579999999999999999995 7999999995 8999999984

>PLN03091 hypothetical protein; Provisional

Probab=96.04  E-value=0.0056  Score=57.95  Aligned_cols=42  Identities=17%  Similarity=0.285  Sum_probs=38.1

Q ss_pred             CCCCCCHHHHHHHHHHHHHhhh-hHHHHHHHhh-hhhHHHHHHH
Q psy8149          30 SGNKWTAEDIEMLKETVRKFGD-ELVIISDRIK-DRTISQIKSN   71 (182)
Q Consensus        30 ~~~KWTdeEiemLr~aV~rFg~-dL~kIS~~Ik-~RTv~QIKs~   71 (182)
                      ..++||.+|=+.|+.+|.+||. +|.+|+..+. .||-.|.|..
T Consensus        13 rKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRER   56 (459)
T PLN03091         13 RKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLR   56 (459)
T ss_pred             cCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHH
Confidence            4589999999999999999996 6999999986 8999999865

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=95.49  E-value=0.047  Score=38.31  Aligned_cols=42  Identities=26%  Similarity=0.486  Sum_probs=31.8

Q ss_pred             CCCCHHHHHHHHHHHHH------hhh--------hHHHHHHHhh----hhhHHHHHHHHh
Q psy8149          32 NKWTAEDIEMLKETVRK------FGD--------ELVIISDRIK----DRTISQIKSNLK   73 (182)
Q Consensus        32 ~KWTdeEiemLr~aV~r------Fg~--------dL~kIS~~Ik----~RTv~QIKs~lK   73 (182)
                      .+||++|+..|.++...      |++        -|..||+.+.    .||..|+|...+
T Consensus         2 ~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~   61 (90)
T PF13837_consen    2 RNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWK   61 (90)
T ss_dssp             -SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence            47999999999998877      543        6999999998    689999998765

>KOG0049|consensus

Probab=93.94  E-value=0.073  Score=53.37  Aligned_cols=61  Identities=15%  Similarity=0.285  Sum_probs=50.1

Q ss_pred             hhhhhccccCCCCCCCCCCCHHHHHHHHHHHHHh-hhhHHHHHHHhhhhhHHHHHHHHhhhhhhh
Q psy8149          16 ADLTLQLHSTPDSPSGNKWTAEDIEMLKETVRKF-GDELVIISDRIKDRTISQIKSNLKKKAFED   79 (182)
Q Consensus        16 geLTmqLh~~~ds~~~~KWTdeEiemLr~aV~rF-g~dL~kIS~~Ik~RTv~QIKs~lKrK~~ed   79 (182)
                      |..+--|||   +-..|.||++|=-||..||.+| |.||-+|-+.+-+|+-.|.|..-.+.+..-
T Consensus       348 ~R~~~~LdP---sikhg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~vPnRSdsQcR~RY~nvL~~s  409 (939)
T KOG0049|consen  348 TRFSHTLDP---SVKHGRWTDQEDVLLVCAVSRYGAKDWAKVRQAVPNRSDSQCRERYTNVLNRS  409 (939)
T ss_pred             hhheeccCc---cccCCCCCCHHHHHHHHHHHHhCccchhhHHHhcCCccHHHHHHHHHHHHHHh
Confidence            334444566   4448999999999999999999 568999999999999999999887766543

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=92.24  E-value=0.6  Score=43.77  Aligned_cols=58  Identities=26%  Similarity=0.290  Sum_probs=49.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhhhh-HHHHHHHhhhhhHHHHHHHHhhhhhhhcCCCCCCCC
Q psy8149          31 GNKWTAEDIEMLKETVRKFGDE-LVIISDRIKDRTISQIKSNLKKKAFEDAGLPIQQQV   88 (182)
Q Consensus        31 ~~KWTdeEiemLr~aV~rFg~d-L~kIS~~Ik~RTv~QIKs~lKrK~~edag~p~~~~~   88 (182)
                      ..-|+.+|-=.|.+++...|=- |.-|+++|+.|+-..||+|--|-..|..=.|++...
T Consensus        63 ~e~WgadEEllli~~~~TlGlGNW~dIadyiGsr~kee~k~HylK~y~es~~ypl~~i~  121 (432)
T COG5114          63 EEGWGADEELLLIECLDTLGLGNWEDIADYIGSRAKEEIKSHYLKMYDESKYYPLPDIT  121 (432)
T ss_pred             CCCcCchHHHHHHHHHHhcCCCcHHHHHHHHhhhhhHHHHHHHHHHHhhcccccccccc
Confidence            3679999999999999999865 999999999999999999988766666667776544

>KOG0457|consensus

Probab=91.44  E-value=0.54  Score=44.70  Aligned_cols=56  Identities=23%  Similarity=0.340  Sum_probs=45.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHhhhh-HHHHHHHhhhhhHHHHHHHHhhhhhhhcCCCCC
Q psy8149          30 SGNKWTAEDIEMLKETVRKFGDE-LVIISDRIKDRTISQIKSNLKKKAFEDAGLPIQ   85 (182)
Q Consensus        30 ~~~KWTdeEiemLr~aV~rFg~d-L~kIS~~Ik~RTv~QIKs~lKrK~~edag~p~~   85 (182)
                      -.+-||.+|==.|.+|+..||=- |.-||+||++||--++|.|--+.-.+.-=.|++
T Consensus        71 ~~~~WtadEEilLLea~~t~G~GNW~dIA~hIGtKtkeeck~hy~k~fv~s~~~~~~  127 (438)
T KOG0457|consen   71 LDPSWTADEEILLLEAAETYGFGNWQDIADHIGTKTKEECKEHYLKHFVNSPIFPLP  127 (438)
T ss_pred             CCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHcccchHHHHHHHHHHHhcCcccccc
Confidence            45889999999999999999876 999999999999999999986554443333443

>KOG0048|consensus

Probab=91.37  E-value=0.16  Score=43.05  Aligned_cols=47  Identities=19%  Similarity=0.360  Sum_probs=40.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhhhh-HHHHHHHhh-hhhHHH--------HHHHHhhhhh
Q psy8149          31 GNKWTAEDIEMLKETVRKFGDE-LVIISDRIK-DRTISQ--------IKSNLKKKAF   77 (182)
Q Consensus        31 ~~KWTdeEiemLr~aV~rFg~d-L~kIS~~Ik-~RTv~Q--------IKs~lKrK~~   77 (182)
                      .|-||.||=++|++-|+.||.. |+.|+..+. .|+=.+        .|-.|||..|
T Consensus         9 kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~f   65 (238)
T KOG0048|consen    9 KGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNF   65 (238)
T ss_pred             CCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCCC
Confidence            4899999999999999999998 999999988 777555        4557887776

>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]

Probab=91.31  E-value=0.3  Score=46.52  Aligned_cols=43  Identities=26%  Similarity=0.522  Sum_probs=40.6

Q ss_pred             CCCCHHHHHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHhh
Q psy8149          32 NKWTAEDIEMLKETVRKFGDELVIISDRIKDRTISQIKSNLKK   74 (182)
Q Consensus        32 ~KWTdeEiemLr~aV~rFg~dL~kIS~~Ik~RTv~QIKs~lKr   74 (182)
                      -+|+..|++.|-.||.-+|-|.+-||...=+|...|||-..++
T Consensus       366 ~~Ws~~e~ekFYKALs~wGtdF~LIs~lfP~R~RkqIKaKfi~  408 (507)
T COG5118         366 LRWSKKEIEKFYKALSIWGTDFSLISSLFPNRERKQIKAKFIK  408 (507)
T ss_pred             CcccHHHHHHHHHHHHHhcchHHHHHHhcCchhHHHHHHHHHH
Confidence            5899999999999999999999999999999999999987665

>KOG4329|consensus

Probab=88.41  E-value=0.51  Score=44.66  Aligned_cols=52  Identities=19%  Similarity=0.572  Sum_probs=42.4

Q ss_pred             hhhhhhccccCCCCCCCCCCCHHHHHHHHHHHHHhhhhHHHH-HHHhhhhhHHHH
Q psy8149          15 LADLTLQLHSTPDSPSGNKWTAEDIEMLKETVRKFGDELVII-SDRIKDRTISQI   68 (182)
Q Consensus        15 LgeLTmqLh~~~ds~~~~KWTdeEiemLr~aV~rFg~dL~kI-S~~Ik~RTv~QI   68 (182)
                      |--|.|...+..|.-.  -|+++|--.|.+++++||.|..-| ...+.+|+|...
T Consensus       263 lrr~rfnvk~~rd~l~--~wsEeEcr~FEegl~~yGKDF~lIr~nkvrtRsvgEl  315 (445)
T KOG4329|consen  263 LRRLRFNVKTVRDDLS--GWSEEECRNFEEGLELYGKDFHLIRANKVRTRSVGEL  315 (445)
T ss_pred             HHhcCCcceecccccc--cCCHHHHHHHHHHHHHhcccHHHHHhcccccchHHHH
Confidence            4456677777777433  599999999999999999999888 457889999876

>KOG0724|consensus

Probab=87.72  E-value=0.55  Score=41.00  Aligned_cols=45  Identities=13%  Similarity=-0.032  Sum_probs=41.6

Q ss_pred             CCCCHHHHHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHhhhh
Q psy8149          32 NKWTAEDIEMLKETVRKFGDELVIISDRIKDRTISQIKSNLKKKA   76 (182)
Q Consensus        32 ~KWTdeEiemLr~aV~rFg~dL~kIS~~Ik~RTv~QIKs~lKrK~   76 (182)
                      ..||+++++.|.++|..|+..|++|=+++..++..+|+.+.+.-.
T Consensus        54 ~~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   98 (335)
T KOG0724|consen   54 PRRTPDSWDKFAEALPLEKRLEDKIEEYIGLVFDVNIRESGQKPF   98 (335)
T ss_pred             cccchhhhhHHHhcCccccccchhHHhhhhhHHHHhhhhccCCCc
Confidence            479999999999999999999999999999999999999976544

>KOG4167|consensus

Probab=86.78  E-value=0.8  Score=46.52  Aligned_cols=48  Identities=15%  Similarity=0.477  Sum_probs=41.3

Q ss_pred             cccCCC-C-CCCCCCCHHHHHHHHHHHHHhhhhHHHHHHHhhhhhHHHHH
Q psy8149          22 LHSTPD-S-PSGNKWTAEDIEMLKETVRKFGDELVIISDRIKDRTISQIK   69 (182)
Q Consensus        22 Lh~~~d-s-~~~~KWTdeEiemLr~aV~rFg~dL~kIS~~Ik~RTv~QIK   69 (182)
                      -|+..+ - ...-+||..|+-.|..|+-.+..|..+|.--|+++||.|--
T Consensus       608 ~h~la~Y~Y~gSd~WTp~E~~lF~kA~y~~~KDF~~v~km~~~KtVaqCV  657 (907)
T KOG4167|consen  608 CHPLANYHYAGSDKWTPLERKLFNKALYTYSKDFIFVQKMVKSKTVAQCV  657 (907)
T ss_pred             ccccceeeecCcccccHHHHHHHHHHHHHhcccHHHHHHHhccccHHHHH
Confidence            367766 2 22479999999999999999999999999999999999853

>PF09420 Nop16: Ribosome biogenesis protein Nop16; InterPro: IPR019002 Nucleolar protein 16 (Nop16) is a protein involved in the biogenesis of the 60S ribosomal subunit

Probab=85.24  E-value=1.1  Score=36.20  Aligned_cols=45  Identities=20%  Similarity=0.401  Sum_probs=40.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHhhhhHHHHHHHhh----hhhHHHHHHHHhh
Q psy8149          30 SGNKWTAEDIEMLKETVRKFGDELVIISDRIK----DRTISQIKSNLKK   74 (182)
Q Consensus        30 ~~~KWTdeEiemLr~aV~rFg~dL~kIS~~Ik----~RTv~QIKs~lKr   74 (182)
                      ..-+=++.|++-+...|.+||+|+...+.=.|    ..|..|||.-+++
T Consensus       113 ~~~~ls~~e~~~i~~Li~KhGdDy~aMarD~KLN~~Q~T~~qlrrki~~  161 (164)
T PF09420_consen  113 KPRRLSEREIEYIEYLIEKHGDDYKAMARDRKLNYMQHTPGQLRRKIRK  161 (164)
T ss_pred             CCCCCCHHHHHHHHHHHHHHCccHHHHhccCCCCcccCCHHHHHHHHHH
Confidence            34678999999999999999999999999888    7899999987765

>KOG4468|consensus

Probab=84.94  E-value=1  Score=45.02  Aligned_cols=42  Identities=17%  Similarity=0.439  Sum_probs=32.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhhhhHHHHHHH----------hhhhhHHHHHHHH
Q psy8149          31 GNKWTAEDIEMLKETVRKFGDELVIISDR----------IKDRTISQIKSNL   72 (182)
Q Consensus        31 ~~KWTdeEiemLr~aV~rFg~dL~kIS~~----------Ik~RTv~QIKs~l   72 (182)
                      ..-||-.|.+-|.+|++.||.|.++|-..          +.-+|-.|+|.+.
T Consensus        88 ktaWt~~E~~~Ffdal~~~GKdFe~VinaklKRrna~s~~~~Ktkdqvr~~y  139 (782)
T KOG4468|consen   88 KTAWTHQEEESFFDALRQVGKDFEKVINAKLKRRNATSRVQSKTKDQVRHYY  139 (782)
T ss_pred             ccccchhhHHHHHHHHHHhcccHHHHHHHHHHhcccccchhhhhhHHHHHHH
Confidence            45799999999999999999999999333          3334556666554

>TIGR01765 tspaseT_teng_N transposase, putative, N-terminal domain

Probab=82.85  E-value=3.9  Score=28.86  Aligned_cols=45  Identities=18%  Similarity=0.415  Sum_probs=39.3

Q ss_pred             CHHHHHHHHHHHHHhhhhHHHHHHHh-hhhhHHHHHHHHhhhhhhh
Q psy8149          35 TAEDIEMLKETVRKFGDELVIISDRI-KDRTISQIKSNLKKKAFED   79 (182)
Q Consensus        35 TdeEiemLr~aV~rFg~dL~kIS~~I-k~RTv~QIKs~lKrK~~ed   79 (182)
                      ++++.+.|.+.+.+|.+=.+-++++. +.++...+|..|.+..|.+
T Consensus         9 ~~e~~~~L~~tm~~f~~A~n~~~~~~~e~~~~~~~k~~L~~l~y~~   54 (73)
T TIGR01765         9 EDKEKEYLLDLIRAFSSAVNFVIKRLLEGKSHSELKKELQRLYYLN   54 (73)
T ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHhhH
Confidence            46777999999999999999998877 7788888899999999977

This model represents the N-terminal region of a family of putative transposases found in the largest copy number in Thermoanaerobacter tengcongensis. The three homologs in Bacillus anthracis are each split into two ORFs and This model represents the upstream ORF.

>PF07750 GcrA: GcrA cell cycle regulator; InterPro: IPR011681 GcrA, together with CtrA (see IPR001789 from INTERPRO and IPR001867 from INTERPRO), form a master cell cycle regulator

Probab=81.29  E-value=1.7  Score=35.66  Aligned_cols=42  Identities=17%  Similarity=0.250  Sum_probs=35.9

Q ss_pred             CCCHHHHHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHhhh
Q psy8149          33 KWTAEDIEMLKETVRKFGDELVIISDRIKDRTISQIKSNLKKK   75 (182)
Q Consensus        33 KWTdeEiemLr~aV~rFg~dL~kIS~~Ik~RTv~QIKs~lKrK   75 (182)
                      -||||.|+.|+... .=|--...|+..++..|..-|-..++|-
T Consensus         2 ~Wtde~~~~L~~lw-~~G~SasqIA~~lg~vsRnAViGk~hRl   43 (162)
T PF07750_consen    2 SWTDERVERLRKLW-AEGLSASQIARQLGGVSRNAVIGKAHRL   43 (162)
T ss_pred             CCCHHHHHHHHHHH-HcCCCHHHHHHHhCCcchhhhhhhhhcc
Confidence            49999999988765 3477789999999989999999999984

These bacterial regulators are involved in controlling the progression and asymmetric polar morphogenesis []. During this process, there are temporal and spatial variations in the concentrations of GcrA and CtrA. The variation in concentration produces time and space dependent transcriptional regulation of modular functions that implement cell-cycle processes []. More specifically, GcrA acts as an activator of components of the replisome and the segregation machinery [].

>KOG2009|consensus

Probab=81.24  E-value=0.81  Score=44.90  Aligned_cols=46  Identities=28%  Similarity=0.515  Sum_probs=42.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHhhhh
Q psy8149          31 GNKWTAEDIEMLKETVRKFGDELVIISDRIKDRTISQIKSNLKKKA   76 (182)
Q Consensus        31 ~~KWTdeEiemLr~aV~rFg~dL~kIS~~Ik~RTv~QIKs~lKrK~   76 (182)
                      -.+|+-+|.+.|..++.+||-|++=||+.--.|++.|||..-+.|.
T Consensus       409 ~~~w~~se~e~fyka~~~~gs~~slis~l~p~R~rk~iK~K~~~eE  454 (584)
T KOG2009|consen  409 TDKWDASETELFYKALSERGSDFSLISNLFPLRDRKQIKAKFKKEE  454 (584)
T ss_pred             cCcccchhhHHhhhHHhhhcccccccccccccccHHHHHHHHhhhh
Confidence            4799999999999999999999999999999999999998776653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	182
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	1e-05
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	2e-05
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	5e-05
1w0u_A	55	Telomeric repeat binding factor 2; telomere, DNA-b	1e-04
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	2e-04
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	3e-04
1vf9_A	64	Telomeric repeat binding factor 2; MYB, helix-turn	3e-04

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Length = 89

 Score = 41.1 bits (96), Expect = 1e-05
 Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 24 STPDSPSGNKWTAEDIEMLKETVRKFGDELVIISDRIKDRTISQIKS---NLKKK 75
          S  ++     WT E++   K+ + + G     I+  +  +T+SQ K+   N KK+
Sbjct: 9  SGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKR 63

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Length = 79

 Score = 40.3 bits (94), Expect = 2e-05
 Identities = 13/63 (20%), Positives = 29/63 (46%)

Query: 22 LHSTPDSPSGNKWTAEDIEMLKETVRKFGDELVIISDRIKDRTISQIKSNLKKKAFEDAG 81
          L  +  + +G +WT ++  +L E +  + D+   +S+ +  RT  +   +  +   ED  
Sbjct: 9  LAKSKGASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPY 68

Query: 82 LPI 84
          L  
Sbjct: 69 LEN 71

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 72

 Score = 39.0 bits (91), Expect = 5e-05
 Identities = 18/47 (38%), Positives = 26/47 (55%)

Query: 24 STPDSPSGNKWTAEDIEMLKETVRKFGDELVIISDRIKDRTISQIKS 70
          S+  S    KWT E+ E+ ++ + KFG     IS  I  RT+ Q+KS
Sbjct: 2  SSGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKS 48

>1w0u_A Telomeric repeat binding factor 2; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle, nuclear protein; 1.8A {Homo sapiens} SCOP: a.4.1.4 Length = 55

 Score = 37.7 bits (88), Expect = 1e-04
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 6/50 (12%)

Query: 33 KWTAEDIEMLKETVRKFGD---ELVIISDRIKDRTISQIK---SNLKKKA 76
          KWT E+ E +K  V+K+G+     +  +    +RT   IK     +K+  
Sbjct: 4  KWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLG 53

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Length = 53

 Score = 36.9 bits (86), Expect = 2e-04
 Identities = 12/49 (24%), Positives = 24/49 (48%), Gaps = 6/49 (12%)

Query: 33 KWTAEDIEMLKETVRKFGD---ELVIISDRIKDRTISQIKS---NLKKK 75
           W  E+ + L+  VRK+G+     +++  +  +RT   +K     +KK 
Sbjct: 4  AWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL 52

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Length = 69

 Score = 36.7 bits (85), Expect = 3e-04
 Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 6/51 (11%)

Query: 33 KWTAEDIEMLKETVRKFGD---ELVIISDRIKDRTISQIK---SNLKKKAF 77
           W  E+ + L+  VRK+G+     +++  +  +RT   +K     +KK   
Sbjct: 12 AWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKL 62

>1vf9_A Telomeric repeat binding factor 2; MYB, helix-turn-helix, telomere, DNA binding protein; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1xg1_A 1vfc_A Length = 64

 Score = 36.6 bits (85), Expect = 3e-04
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 6/50 (12%)

Query: 33 KWTAEDIEMLKETVRKFGD---ELVIISDRIKDRTISQIK---SNLKKKA 76
          KWT E+ E +K  V+K+G+     +  +    +RT   IK     +K+  
Sbjct: 13 KWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLG 62

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	182
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	98.95
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	98.93
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	98.91
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	98.74
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	98.74
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	98.73
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	98.64
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	98.61
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	98.59
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	98.57
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	98.55
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	98.54
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	98.51
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	97.82
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	98.44
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	98.41
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	98.39
2cjj_A	93	Radialis; plant development, DNA-binding protein,	98.39
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	98.38
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	98.36
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	98.35
2crg_A	70	Metastasis associated protein MTA3; transcription	98.3
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	98.29
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	98.29
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	98.27
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	98.25
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	98.24
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	98.21
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	98.2
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	98.19
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	98.11
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	98.06
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	97.96
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	97.93
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	97.91
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	97.9
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	97.86
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	97.85
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	97.74
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	97.68
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	97.66
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	97.65
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	97.64
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	97.56
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	96.9
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	96.72
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	95.91
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	94.71
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	93.78
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	92.52
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	91.34
2y9y_A	374	Imitation switch protein 1 (DEL_ATPase); transcrip	82.82

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.95  E-value=1.3e-09  Score=75.85  Aligned_cols=56  Identities=36%  Similarity=0.497  Sum_probs=47.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHH----HhhhhhhhcCCCCCCC
Q psy8149          30 SGNKWTAEDIEMLKETVRKFGDELVIISDRIKDRTISQIKSN----LKKKAFEDAGLPIQQQ   87 (182)
Q Consensus        30 ~~~KWTdeEiemLr~aV~rFg~dL~kIS~~Ik~RTv~QIKs~----lKrK~~edag~p~~~~   87 (182)
                      ..+.||++|.+.|..+|..||.+|.+||.+|.+||..|||.+    ++++.-.  |++....
T Consensus         8 ~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~--g~~~~~~   67 (72)
T 2cu7_A            8 YSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC--GLDKETP   67 (72)
T ss_dssp             CCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS--CTTCCCS
T ss_pred             CCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc--CCCCCcc
Confidence            468999999999999999999999999999999999999997    4554433  7765543

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=98.93  E-value=6.9e-10  Score=79.83  Aligned_cols=52  Identities=21%  Similarity=0.444  Sum_probs=45.9

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHhhhhhhh
Q psy8149          28 SPSGNKWTAEDIEMLKETVRKFGDELVIISDRIKDRTISQIKSNLKKKAFED   79 (182)
Q Consensus        28 s~~~~KWTdeEiemLr~aV~rFg~dL~kIS~~Ik~RTv~QIKs~lKrK~~ed   79 (182)
                      ....+.||++|...|.+||.+||++|.+|+++|.+||..|+|.+-.+--++|
T Consensus        15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~~i~d   66 (79)
T 2yus_A           15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLPIED   66 (79)
T ss_dssp             SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTSCCCC
T ss_pred             cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhcccc
Confidence            3446899999999999999999999999999999999999999987653333

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.91  E-value=2.4e-09  Score=74.51  Aligned_cols=56  Identities=27%  Similarity=0.494  Sum_probs=47.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhh------hhHHHHHHHhhhhhHHHHHHHHhhhhhh--hcCCCCCC
Q psy8149          31 GNKWTAEDIEMLKETVRKFG------DELVIISDRIKDRTISQIKSNLKKKAFE--DAGLPIQQ   86 (182)
Q Consensus        31 ~~KWTdeEiemLr~aV~rFg------~dL~kIS~~Ik~RTv~QIKs~lKrK~~e--dag~p~~~   86 (182)
                      .+.||++|.+.|+++|..||      .+|.+||.+|.+||..|+|.+-.+-+..  ..|++++.
T Consensus         8 ~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g~~~pg   71 (75)
T 2yum_A            8 NQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAGIPVSG   71 (75)
T ss_dssp             SSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTCSCCCC
T ss_pred             CCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCCCCC
Confidence            57999999999999999999      8999999999999999999887544332  46777654

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=98.74  E-value=1.6e-08  Score=68.19  Aligned_cols=48  Identities=19%  Similarity=0.248  Sum_probs=43.9

Q ss_pred             CCCCCCHHHHHHHHHHHHHhh-hhHHHHHHHhhhhhHHHHHHHHhhhhh
Q psy8149          30 SGNKWTAEDIEMLKETVRKFG-DELVIISDRIKDRTISQIKSNLKKKAF   77 (182)
Q Consensus        30 ~~~KWTdeEiemLr~aV~rFg-~dL~kIS~~Ik~RTv~QIKs~lKrK~~   77 (182)
                      ..++||++|-+.|+++|.+|| .+|.+||.+|.+||..|+|.+-.+-++
T Consensus         7 ~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~   55 (60)
T 1x41_A            7 GDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFS   55 (60)
T ss_dssp             CCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHcc
Confidence            457999999999999999999 699999999999999999998876554

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=98.74  E-value=1.1e-08  Score=68.97  Aligned_cols=44  Identities=20%  Similarity=0.395  Sum_probs=41.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhh-hhHHHHHHHhh-hhhHHHHHHHHhh
Q psy8149          31 GNKWTAEDIEMLKETVRKFG-DELVIISDRIK-DRTISQIKSNLKK   74 (182)
Q Consensus        31 ~~KWTdeEiemLr~aV~rFg-~dL~kIS~~Ik-~RTv~QIKs~lKr   74 (182)
                      .++||++|-+.|+++|.+|| .+|.+||.+|. +||..|+|.+-.+
T Consensus         9 ~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~   54 (58)
T 2elk_A            9 DENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLK   54 (58)
T ss_dssp             CCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHH
Confidence            57899999999999999999 89999999999 9999999998754

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=98.73  E-value=1.1e-08  Score=87.60  Aligned_cols=55  Identities=22%  Similarity=0.393  Sum_probs=46.1

Q ss_pred             hhhccccCCC-CCCCCCCCHHHHHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHH
Q psy8149          18 LTLQLHSTPD-SPSGNKWTAEDIEMLKETVRKFGDELVIISDRIKDRTISQIKSNL   72 (182)
Q Consensus        18 LTmqLh~~~d-s~~~~KWTdeEiemLr~aV~rFg~dL~kIS~~Ik~RTv~QIKs~l   72 (182)
                      +.-.+.+..- ....++||++|+..|..|+.+||.||..|+.+|.+||+.|||++-
T Consensus       119 ~Ie~~R~pe~~~k~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY  174 (235)
T 2iw5_B          119 GIEPYRLPEVIQKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFF  174 (235)
T ss_dssp             TTGGGCCCCCCCCCCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHH
T ss_pred             hcccccCCCCCCccCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHH
Confidence            3334455333 445689999999999999999999999999999999999999874

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.64  E-value=3.6e-08  Score=67.07  Aligned_cols=44  Identities=14%  Similarity=0.283  Sum_probs=40.1

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHH
Q psy8149          28 SPSGNKWTAEDIEMLKETVRKFGDELVIISDRIKDRTISQIKSN   71 (182)
Q Consensus        28 s~~~~KWTdeEiemLr~aV~rFg~dL~kIS~~Ik~RTv~QIKs~   71 (182)
                      ......||++|++.|.+++..||.+|.+|+..|.+||+.|++..
T Consensus         9 r~~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~   52 (61)
T 2eqr_A            9 RQFMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLY   52 (61)
T ss_dssp             CSCCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHH
T ss_pred             cccCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHH
Confidence            33468999999999999999999999999999999999999754

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=98.61  E-value=3.4e-08  Score=64.25  Aligned_cols=44  Identities=30%  Similarity=0.468  Sum_probs=40.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhhh-hHHHHHHHhhhhhHHHHHHHHhh
Q psy8149          31 GNKWTAEDIEMLKETVRKFGD-ELVIISDRIKDRTISQIKSNLKK   74 (182)
Q Consensus        31 ~~KWTdeEiemLr~aV~rFg~-dL~kIS~~Ik~RTv~QIKs~lKr   74 (182)
                      .++||.+|-+.|.++|.+||. +|..||..+..||..|+|..-+.
T Consensus         3 ~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~   47 (52)
T 1guu_A            3 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQK   47 (52)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHH
Confidence            479999999999999999999 99999999999999999987544

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=98.59  E-value=7.9e-08  Score=88.85  Aligned_cols=45  Identities=27%  Similarity=0.575  Sum_probs=42.3

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHH
Q psy8149          28 SPSGNKWTAEDIEMLKETVRKFGDELVIISDRIKDRTISQIKSNL   72 (182)
Q Consensus        28 s~~~~KWTdeEiemLr~aV~rFg~dL~kIS~~Ik~RTv~QIKs~l   72 (182)
                      +.-+.+||++|+..|+.+|.+||+||..|+++|++||+.|||++.
T Consensus       377 ~~~~~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy  421 (482)
T 2xag_B          377 QKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFF  421 (482)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHH
T ss_pred             cccCCCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHH
Confidence            445689999999999999999999999999999999999999986

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.57  E-value=9.7e-08  Score=67.81  Aligned_cols=45  Identities=22%  Similarity=0.505  Sum_probs=40.4

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhh----hhHHHHHHHhhhhhHHHHHHHHhh
Q psy8149          29 PSGNKWTAEDIEMLKETVRKFG----DELVIISDRIKDRTISQIKSNLKK   74 (182)
Q Consensus        29 ~~~~KWTdeEiemLr~aV~rFg----~dL~kIS~~Ik~RTv~QIKs~lKr   74 (182)
                      ...+.||.+|..+|..||..|+    ++|.+|++.+ .||+.|||.+.|.
T Consensus         6 ~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~   54 (72)
T 2cqq_A            6 SGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQ   54 (72)
T ss_dssp             CCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHH
Confidence            3457899999999999999996    6799999999 7999999998764

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=98.55  E-value=4e-08  Score=64.05  Aligned_cols=43  Identities=26%  Similarity=0.442  Sum_probs=39.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhhh-hHHHHHHHhhhhhHHHHHHHHh
Q psy8149          31 GNKWTAEDIEMLKETVRKFGD-ELVIISDRIKDRTISQIKSNLK   73 (182)
Q Consensus        31 ~~KWTdeEiemLr~aV~rFg~-dL~kIS~~Ik~RTv~QIKs~lK   73 (182)
                      .++||++|-+.|.++|..||. +|..||..|..||..|+|..-.
T Consensus         3 k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~   46 (52)
T 1gvd_A            3 KGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWH   46 (52)
T ss_dssp             CCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHH
Confidence            479999999999999999997 6999999999999999998754

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.54  E-value=8.8e-08  Score=65.88  Aligned_cols=41  Identities=12%  Similarity=0.451  Sum_probs=38.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhhhhHHHHHHH-hhhhhHHHHHHH
Q psy8149          31 GNKWTAEDIEMLKETVRKFGDELVIISDR-IKDRTISQIKSN   71 (182)
Q Consensus        31 ~~KWTdeEiemLr~aV~rFg~dL~kIS~~-Ik~RTv~QIKs~   71 (182)
                      ...||++|+..|.++|..||.||.+|+.+ |.+||+.||...
T Consensus         9 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~f   50 (63)
T 2yqk_A            9 EKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITF   50 (63)
T ss_dssp             CCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHH
Confidence            57999999999999999999999999996 999999999753

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=98.51  E-value=9e-08  Score=64.00  Aligned_cols=45  Identities=29%  Similarity=0.480  Sum_probs=41.1

Q ss_pred             CCCCCCHHHHHHHHHHHHHhh-hhHHHHHHHhhhhhHHHHHHHHhh
Q psy8149          30 SGNKWTAEDIEMLKETVRKFG-DELVIISDRIKDRTISQIKSNLKK   74 (182)
Q Consensus        30 ~~~KWTdeEiemLr~aV~rFg-~dL~kIS~~Ik~RTv~QIKs~lKr   74 (182)
                      ..++||++|-+.|+++|.+|| .+|..||..+..||..|+|..-..
T Consensus         7 ~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~   52 (60)
T 2d9a_A            7 GKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLR   52 (60)
T ss_dssp             CCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHH
Confidence            357999999999999999999 599999999999999999987653

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=97.82  E-value=2.3e-08  Score=72.65  Aligned_cols=43  Identities=23%  Similarity=0.333  Sum_probs=40.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHH
Q psy8149          30 SGNKWTAEDIEMLKETVRKFGDELVIISDRIKDRTISQIKSNL   72 (182)
Q Consensus        30 ~~~KWTdeEiemLr~aV~rFg~dL~kIS~~Ik~RTv~QIKs~l   72 (182)
                      ..+.||++|.+.|..+|..||.+|..||.+|.+||..|||..-
T Consensus        15 ~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~   57 (89)
T 2ltp_A           15 YFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFY   57 (89)
Confidence            3689999999999999999999999999999999999999864

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=98.44  E-value=1.6e-07  Score=61.70  Aligned_cols=42  Identities=29%  Similarity=0.389  Sum_probs=38.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhh-hhHHHHHHHhh--hhhHHHHHHHH
Q psy8149          31 GNKWTAEDIEMLKETVRKFG-DELVIISDRIK--DRTISQIKSNL   72 (182)
Q Consensus        31 ~~KWTdeEiemLr~aV~rFg-~dL~kIS~~Ik--~RTv~QIKs~l   72 (182)
                      .++||++|-+.|.++|.+|| ..|..|+..+.  .||..|+|..-
T Consensus         2 r~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw   46 (53)
T 1w0t_A            2 RQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRW   46 (53)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHH
Confidence            37999999999999999999 59999999999  99999999753

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.41  E-value=1.5e-07  Score=67.09  Aligned_cols=44  Identities=14%  Similarity=0.269  Sum_probs=41.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhh----hhHHHHHHHhhhhhHHHHHHHHhh
Q psy8149          31 GNKWTAEDIEMLKETVRKFG----DELVIISDRIKDRTISQIKSNLKK   74 (182)
Q Consensus        31 ~~KWTdeEiemLr~aV~rFg----~dL~kIS~~Ik~RTv~QIKs~lKr   74 (182)
                      .+.||.+|-.+|+.||..||    ++|.+|+.+|..||..|||.+-+.
T Consensus        18 ~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~   65 (73)
T 2cqr_A           18 EEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKL   65 (73)
T ss_dssp             SCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHH
Confidence            47899999999999999998    889999999999999999998763

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=98.39  E-value=2.4e-07  Score=63.92  Aligned_cols=47  Identities=32%  Similarity=0.518  Sum_probs=38.8

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhhh-hHHHHHHHhh--hhhHHHHHHHH
Q psy8149          26 PDSPSGNKWTAEDIEMLKETVRKFGD-ELVIISDRIK--DRTISQIKSNL   72 (182)
Q Consensus        26 ~ds~~~~KWTdeEiemLr~aV~rFg~-dL~kIS~~Ik--~RTv~QIKs~l   72 (182)
                      ++..-.++||+||-+.|+++|.+||. +|..|+..+.  .||-.|+|..-
T Consensus         6 ~~~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw   55 (64)
T 3sjm_A            6 TNITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRW   55 (64)
T ss_dssp             ----CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHH
Confidence            33334579999999999999999996 8999999965  99999999764

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=98.39  E-value=4.5e-07  Score=67.33  Aligned_cols=46  Identities=17%  Similarity=0.422  Sum_probs=40.9

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhh----hhHHHHHHHhhhhhHHHHHHHHhh
Q psy8149          29 PSGNKWTAEDIEMLKETVRKFG----DELVIISDRIKDRTISQIKSNLKK   74 (182)
Q Consensus        29 ~~~~KWTdeEiemLr~aV~rFg----~dL~kIS~~Ik~RTv~QIKs~lKr   74 (182)
                      ++.+.||.+|-..|+.||..||    ++|.+|+.+|..||..|||.+-+.
T Consensus         6 ~~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~   55 (93)
T 2cjj_A            6 GSGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEI   55 (93)
T ss_dssp             --CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHH
Confidence            3457999999999999999995    789999999999999999998764

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=98.38  E-value=4e-07  Score=64.96  Aligned_cols=42  Identities=33%  Similarity=0.483  Sum_probs=39.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHh
Q psy8149          31 GNKWTAEDIEMLKETVRKFGDELVIISDRIKDRTISQIKSNLK   73 (182)
Q Consensus        31 ~~KWTdeEiemLr~aV~rFg~dL~kIS~~Ik~RTv~QIKs~lK   73 (182)
                      .+.||+||-+.|..++.+||..|.+||..+ .||..|||..-+
T Consensus        23 k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~   64 (73)
T 2llk_A           23 VGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCR   64 (73)
T ss_dssp             CCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHH
Confidence            689999999999999999999999999999 999999998654

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.36  E-value=6e-07  Score=61.09  Aligned_cols=43  Identities=21%  Similarity=0.268  Sum_probs=39.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHhh
Q psy8149          31 GNKWTAEDIEMLKETVRKFGDELVIISDRIKDRTISQIKSNLKK   74 (182)
Q Consensus        31 ~~KWTdeEiemLr~aV~rFg~dL~kIS~~Ik~RTv~QIKs~lKr   74 (182)
                      .+.||.+|-+.|..++..||.+|.+||. +-.||..|+|.+-+.
T Consensus         9 k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~   51 (66)
T 2din_A            9 KTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEF   51 (66)
T ss_dssp             CCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHH
Confidence            5789999999999999999999999999 667999999987654

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.35  E-value=5.7e-07  Score=61.84  Aligned_cols=45  Identities=24%  Similarity=0.466  Sum_probs=41.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHhh-hhHHHHHHHhhhhhHHHHHHHHhh
Q psy8149          30 SGNKWTAEDIEMLKETVRKFG-DELVIISDRIKDRTISQIKSNLKK   74 (182)
Q Consensus        30 ~~~KWTdeEiemLr~aV~rFg-~dL~kIS~~Ik~RTv~QIKs~lKr   74 (182)
                      -.++||++|-+.|+.+|.+|| .+|.+|+.+|..||..|+|..-..
T Consensus         8 k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~   53 (70)
T 2dim_A            8 KGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYE   53 (70)
T ss_dssp             TTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHH
Confidence            357999999999999999999 799999999999999999987655

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=98.30  E-value=4.9e-07  Score=63.50  Aligned_cols=42  Identities=17%  Similarity=0.426  Sum_probs=38.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHhhhhHHHHHHH-hhhhhHHHHHHH
Q psy8149          30 SGNKWTAEDIEMLKETVRKFGDELVIISDR-IKDRTISQIKSN   71 (182)
Q Consensus        30 ~~~KWTdeEiemLr~aV~rFg~dL~kIS~~-Ik~RTv~QIKs~   71 (182)
                      .-..||++|+..|.+||..||.||.+|+.+ |.+||+.||...
T Consensus         7 ~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~f   49 (70)
T 2crg_A            7 GMEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEY   49 (70)
T ss_dssp             SSCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHH
Confidence            346899999999999999999999999995 999999999864

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=98.29  E-value=5.5e-07  Score=68.01  Aligned_cols=47  Identities=28%  Similarity=0.416  Sum_probs=43.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHhhhh
Q psy8149          30 SGNKWTAEDIEMLKETVRKFGDELVIISDRIKDRTISQIKSNLKKKA   76 (182)
Q Consensus        30 ~~~KWTdeEiemLr~aV~rFg~dL~kIS~~Ik~RTv~QIKs~lKrK~   76 (182)
                      ..++||++|-+.|+.+|.+||.+|..|+..+.+||..|+|..-++.+
T Consensus        10 kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l   56 (126)
T 3osg_A           10 KKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYL   56 (126)
T ss_dssp             SSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhc
Confidence            45899999999999999999999999999999999999999877654

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=98.29  E-value=7.1e-07  Score=65.55  Aligned_cols=43  Identities=23%  Similarity=0.336  Sum_probs=40.3

Q ss_pred             CCCCHHHHHHHHHHHHHhhh-hHHHHHHHhhhhhHHHHHHHHhh
Q psy8149          32 NKWTAEDIEMLKETVRKFGD-ELVIISDRIKDRTISQIKSNLKK   74 (182)
Q Consensus        32 ~KWTdeEiemLr~aV~rFg~-dL~kIS~~Ik~RTv~QIKs~lKr   74 (182)
                      ++||++|-++|+.+|.+||. +|..||..|.+||..|+|..-.+
T Consensus         2 ~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~   45 (107)
T 2k9n_A            2 VKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNN   45 (107)
T ss_dssp             CSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHH
Confidence            69999999999999999996 89999999999999999987654

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=98.27  E-value=5.9e-07  Score=61.74  Aligned_cols=43  Identities=28%  Similarity=0.401  Sum_probs=39.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhh-hhHHHHHHHhh--hhhHHHHHHHHh
Q psy8149          31 GNKWTAEDIEMLKETVRKFG-DELVIISDRIK--DRTISQIKSNLK   73 (182)
Q Consensus        31 ~~KWTdeEiemLr~aV~rFg-~dL~kIS~~Ik--~RTv~QIKs~lK   73 (182)
                      .++||++|-+.|+.+|.+|| ..|..|+..+.  .||..|+|..-.
T Consensus        10 r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~   55 (69)
T 1ity_A           10 RQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWR   55 (69)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHH
Confidence            58999999999999999999 59999999999  999999998644

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.25  E-value=1.1e-06  Score=63.26  Aligned_cols=45  Identities=7%  Similarity=0.229  Sum_probs=40.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHhhh----hHHHHHHHhhhhhHHHHHHHHhh
Q psy8149          30 SGNKWTAEDIEMLKETVRKFGD----ELVIISDRIKDRTISQIKSNLKK   74 (182)
Q Consensus        30 ~~~KWTdeEiemLr~aV~rFg~----dL~kIS~~Ik~RTv~QIKs~lKr   74 (182)
                      ....||++|..+|+.||..|+.    +|.+|+++|.+||+.+++.+-+.
T Consensus         7 ~~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~   55 (73)
T 1wgx_A            7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYME   55 (73)
T ss_dssp             SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHH
Confidence            3568999999999999999974    69999999999999999976653

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=98.24  E-value=8.8e-07  Score=64.26  Aligned_cols=43  Identities=21%  Similarity=0.428  Sum_probs=40.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHh
Q psy8149          31 GNKWTAEDIEMLKETVRKFGDELVIISDRIKDRTISQIKSNLK   73 (182)
Q Consensus        31 ~~KWTdeEiemLr~aV~rFg~dL~kIS~~Ik~RTv~QIKs~lK   73 (182)
                      .+.||++|-+.|..+|..||..|..||..+.+||-.|||..-+
T Consensus        56 ~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~   98 (105)
T 1gv2_A           56 KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWN   98 (105)
T ss_dssp             CCCCCHHHHHHHHHHHHHHSSCHHHHHTTCTTCCHHHHHHHHH
T ss_pred             ccCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHH
Confidence            6799999999999999999999999999999999999998654

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=98.21  E-value=1.3e-06  Score=65.87  Aligned_cols=57  Identities=28%  Similarity=0.468  Sum_probs=45.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHhhhhhhhcCCCCCCCC
Q psy8149          31 GNKWTAEDIEMLKETVRKFGDELVIISDRIKDRTISQIKSNLKKKAFEDAGLPIQQQV   88 (182)
Q Consensus        31 ~~KWTdeEiemLr~aV~rFg~dL~kIS~~Ik~RTv~QIKs~lKrK~~edag~p~~~~~   88 (182)
                      .+.||++|-+.|.++|..||..|.+||..+..||-.|||..-+ .+...-|+|.....
T Consensus        62 ~~~WT~eEd~~L~~~v~~~G~~W~~Ia~~l~gRt~~~~k~rw~-~l~~k~~~p~~~~~  118 (126)
T 3osg_A           62 HTPWTAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWV-TISNKLGIPQTQQM  118 (126)
T ss_dssp             CSCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHH-HHHHHTTC------
T ss_pred             cccCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHH-HHHHhcCCCCCCCC
Confidence            5799999999999999999999999999999999999998864 45556787776533

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=98.20  E-value=1.7e-06  Score=63.51  Aligned_cols=43  Identities=21%  Similarity=0.422  Sum_probs=40.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHh
Q psy8149          31 GNKWTAEDIEMLKETVRKFGDELVIISDRIKDRTISQIKSNLK   73 (182)
Q Consensus        31 ~~KWTdeEiemLr~aV~rFg~dL~kIS~~Ik~RTv~QIKs~lK   73 (182)
                      .+.||++|-+.|..+|..||..|.+||..+..||-.|||..-+
T Consensus        53 ~~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~   95 (107)
T 2k9n_A           53 TDPWSPEEDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRWM   95 (107)
T ss_dssp             TCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHHHHhCcCHHHHHHHCCCCCHHHHHHHHH
Confidence            5899999999999999999999999999999999999998754

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=98.19  E-value=9.7e-07  Score=64.04  Aligned_cols=45  Identities=22%  Similarity=0.417  Sum_probs=41.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhhh-hHHHHHHHhhhhhHHHHHHHHhhh
Q psy8149          31 GNKWTAEDIEMLKETVRKFGD-ELVIISDRIKDRTISQIKSNLKKK   75 (182)
Q Consensus        31 ~~KWTdeEiemLr~aV~rFg~-dL~kIS~~Ik~RTv~QIKs~lKrK   75 (182)
                      .++||++|-++|+.+|.+||. +|..||..|.+||..|+|..-.+.
T Consensus         4 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~   49 (105)
T 1gv2_A            4 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNH   49 (105)
T ss_dssp             CSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhc
Confidence            479999999999999999997 699999999999999999877664

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=98.11  E-value=2.7e-06  Score=63.94  Aligned_cols=44  Identities=25%  Similarity=0.395  Sum_probs=41.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhhh-hHHHHHHHhhhhhHHHHHHHHhh
Q psy8149          31 GNKWTAEDIEMLKETVRKFGD-ELVIISDRIKDRTISQIKSNLKK   74 (182)
Q Consensus        31 ~~KWTdeEiemLr~aV~rFg~-dL~kIS~~Ik~RTv~QIKs~lKr   74 (182)
                      .++||++|-++|..+|..||. +|..|+..+..||..|+|..-++
T Consensus        27 k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~   71 (128)
T 1h8a_C           27 KGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHN   71 (128)
T ss_dssp             CSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHH
Confidence            689999999999999999996 69999999999999999988765

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=98.06  E-value=2.7e-06  Score=63.92  Aligned_cols=43  Identities=19%  Similarity=0.421  Sum_probs=40.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHh
Q psy8149          31 GNKWTAEDIEMLKETVRKFGDELVIISDRIKDRTISQIKSNLK   73 (182)
Q Consensus        31 ~~KWTdeEiemLr~aV~rFg~dL~kIS~~Ik~RTv~QIKs~lK   73 (182)
                      .+.||++|-+.|..++..||.+|.+||..+.+||-.|||..-+
T Consensus        79 ~~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~r~~  121 (128)
T 1h8a_C           79 KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWN  121 (128)
T ss_dssp             CSCCCHHHHHHHHHHHHHHCSCHHHHGGGSTTCCHHHHHHHHH
T ss_pred             cccCCHHHHHHHHHHHHHHCcCHHHHHHHCCCCCHHHHHHHHH
Confidence            5799999999999999999999999999999999999998654

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=97.96  E-value=2e-06  Score=65.20  Aligned_cols=46  Identities=15%  Similarity=0.263  Sum_probs=42.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhh-hhHHHHHHHhhhhhHHHHHHHHhhhh
Q psy8149          31 GNKWTAEDIEMLKETVRKFG-DELVIISDRIKDRTISQIKSNLKKKA   76 (182)
Q Consensus        31 ~~KWTdeEiemLr~aV~rFg-~dL~kIS~~Ik~RTv~QIKs~lKrK~   76 (182)
                      .|+||.+|-+.|+.+|..|| .+|..||..|.+||..|+|..-.+.+
T Consensus         2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l   48 (131)
T 3zqc_A            2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHL   48 (131)
T ss_dssp             CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhcc
Confidence            37999999999999999999 68999999999999999998877644

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=97.93  E-value=5.2e-06  Score=62.84  Aligned_cols=43  Identities=28%  Similarity=0.417  Sum_probs=40.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHh
Q psy8149          31 GNKWTAEDIEMLKETVRKFGDELVIISDRIKDRTISQIKSNLK   73 (182)
Q Consensus        31 ~~KWTdeEiemLr~aV~rFg~dL~kIS~~Ik~RTv~QIKs~lK   73 (182)
                      .+.||++|-+.|..+|..||..|..||..+..||-.|||..-.
T Consensus        54 ~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~   96 (131)
T 3zqc_A           54 KHAWTPEEDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWN   96 (131)
T ss_dssp             CSCCCHHHHHHHHHHHHHSCSCHHHHTTTSTTCCHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHH
Confidence            5789999999999999999999999999999999999998643

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=97.91  E-value=8.7e-06  Score=59.17  Aligned_cols=42  Identities=24%  Similarity=0.384  Sum_probs=38.2

Q ss_pred             CCCCHHHHHHHHHHHHHhhh-hHHHHHHH----hhhhhHHHHHHHHh
Q psy8149          32 NKWTAEDIEMLKETVRKFGD-ELVIISDR----IKDRTISQIKSNLK   73 (182)
Q Consensus        32 ~KWTdeEiemLr~aV~rFg~-dL~kIS~~----Ik~RTv~QIKs~lK   73 (182)
                      .+||++|.+.|+.+|.+||. .|..|+..    +..||-.|||..-+
T Consensus         1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWr   47 (83)
T 2ckx_A            1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWK   47 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHH
Confidence            37999999999999999999 99999996    88999999997543

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=97.90  E-value=8.6e-06  Score=57.33  Aligned_cols=45  Identities=20%  Similarity=0.246  Sum_probs=39.5

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhhhhHHHHHH---HhhhhhHHHHHHHH
Q psy8149          28 SPSGNKWTAEDIEMLKETVRKFGDELVIISD---RIKDRTISQIKSNL   72 (182)
Q Consensus        28 s~~~~KWTdeEiemLr~aV~rFg~dL~kIS~---~Ik~RTv~QIKs~l   72 (182)
                      +....+||+||.+.|+++|++||.-|..|+.   ....||...||..-
T Consensus         5 ~~~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~   52 (62)
T 1x58_A            5 SSGRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKY   52 (62)
T ss_dssp             CCCSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHH
Confidence            3446899999999999999999999999995   67899999999643

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=97.86  E-value=7.8e-06  Score=60.28  Aligned_cols=41  Identities=15%  Similarity=0.329  Sum_probs=38.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHH
Q psy8149          31 GNKWTAEDIEMLKETVRKFGDELVIISDRIKDRTISQIKSN   71 (182)
Q Consensus        31 ~~KWTdeEiemLr~aV~rFg~dL~kIS~~Ik~RTv~QIKs~   71 (182)
                      -..||++|++.|.+++..||.|+.+|++.|.+||+.|+-..
T Consensus        43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~   83 (94)
T 4a69_C           43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLY   83 (94)
T ss_dssp             TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHH
Confidence            35899999999999999999999999999999999998643

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=97.85  E-value=1.1e-05  Score=62.41  Aligned_cols=43  Identities=21%  Similarity=0.428  Sum_probs=40.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHh
Q psy8149          31 GNKWTAEDIEMLKETVRKFGDELVIISDRIKDRTISQIKSNLK   73 (182)
Q Consensus        31 ~~KWTdeEiemLr~aV~rFg~dL~kIS~~Ik~RTv~QIKs~lK   73 (182)
                      .+.||++|.+.|..++..||..|..||..+..||-.|||..-+
T Consensus       110 ~~~WT~eEd~~L~~~~~~~g~~W~~Ia~~l~gRt~~~~knr~~  152 (159)
T 1h89_C          110 KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWN  152 (159)
T ss_dssp             CSCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHH
T ss_pred             ccCCChHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHH
Confidence            5799999999999999999999999999999999999998754

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=97.74  E-value=2.8e-05  Score=60.16  Aligned_cols=44  Identities=23%  Similarity=0.422  Sum_probs=41.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhhh-hHHHHHHHhhhhhHHHHHHHHhh
Q psy8149          31 GNKWTAEDIEMLKETVRKFGD-ELVIISDRIKDRTISQIKSNLKK   74 (182)
Q Consensus        31 ~~KWTdeEiemLr~aV~rFg~-dL~kIS~~Ik~RTv~QIKs~lKr   74 (182)
                      .+.||++|-+.|..+|..||. +|..||..+..||..|+|..-+.
T Consensus        58 ~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~  102 (159)
T 1h89_C           58 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHN  102 (159)
T ss_dssp             CSCCCHHHHHHHHHHHHHHCSCCHHHHHHTSTTCCHHHHHHHHHH
T ss_pred             CCCCChHHHHHHHHHHHHhCcccHHHHHHHcCCCCHHHHHHHHHH
Confidence            689999999999999999996 79999999999999999987654

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=97.68  E-value=1.8e-05  Score=60.05  Aligned_cols=43  Identities=19%  Similarity=0.273  Sum_probs=39.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHhhh-hHHHHHHHh----hhhhHHHHHHHH
Q psy8149          30 SGNKWTAEDIEMLKETVRKFGD-ELVIISDRI----KDRTISQIKSNL   72 (182)
Q Consensus        30 ~~~KWTdeEiemLr~aV~rFg~-dL~kIS~~I----k~RTv~QIKs~l   72 (182)
                      ..++||+||.+.|+++|.+||. .|..|+...    ..||-.+||..-
T Consensus        12 ~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrW   59 (105)
T 2aje_A           12 IRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKW   59 (105)
T ss_dssp             CCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHH
Confidence            3589999999999999999999 999999976    799999999754

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=97.66  E-value=9.5e-05  Score=52.10  Aligned_cols=46  Identities=26%  Similarity=0.266  Sum_probs=40.5

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhhhh---HHHHHHHhh--hhhHHHHHHHHhh
Q psy8149          29 PSGNKWTAEDIEMLKETVRKFGDE---LVIISDRIK--DRTISQIKSNLKK   74 (182)
Q Consensus        29 ~~~~KWTdeEiemLr~aV~rFg~d---L~kIS~~Ik--~RTv~QIKs~lKr   74 (182)
                      ...-+||+|.|++|.+||..+|-|   ..+|.+.|.  ..|..||+|||-|
T Consensus         5 k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQK   55 (64)
T 1irz_A            5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQK   55 (64)
T ss_dssp             CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHH
T ss_pred             CCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHH
Confidence            345799999999999999999977   679999987  4599999999965

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=97.65  E-value=4.1e-05  Score=59.44  Aligned_cols=43  Identities=23%  Similarity=0.367  Sum_probs=39.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhhh-hHHHHHHHh----hhhhHHHHHHHHh
Q psy8149          31 GNKWTAEDIEMLKETVRKFGD-ELVIISDRI----KDRTISQIKSNLK   73 (182)
Q Consensus        31 ~~KWTdeEiemLr~aV~rFg~-dL~kIS~~I----k~RTv~QIKs~lK   73 (182)
                      .++||++|.+.|+++|.+||. .|..|+...    ..||-.|||..-+
T Consensus        17 r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWr   64 (121)
T 2juh_A           17 RRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWK   64 (121)
T ss_dssp             SCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHH
Confidence            579999999999999999999 999999997    7999999997543

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=97.64  E-value=4e-05  Score=59.62  Aligned_cols=44  Identities=25%  Similarity=0.369  Sum_probs=39.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHhhh-hHHHHHHHh----hhhhHHHHHHHHh
Q psy8149          30 SGNKWTAEDIEMLKETVRKFGD-ELVIISDRI----KDRTISQIKSNLK   73 (182)
Q Consensus        30 ~~~KWTdeEiemLr~aV~rFg~-dL~kIS~~I----k~RTv~QIKs~lK   73 (182)
                      ..++||++|.+.|+++|.+||. .|..|+...    ..||-.|||..-+
T Consensus        30 ~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWr   78 (122)
T 2roh_A           30 IRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWK   78 (122)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHH
Confidence            3579999999999999999998 899999986    7999999996543

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=97.56  E-value=3.7e-06  Score=61.13  Aligned_cols=43  Identities=16%  Similarity=0.273  Sum_probs=37.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHhhh----hHHHHHHHhhhhhHHHHHHHH
Q psy8149          30 SGNKWTAEDIEMLKETVRKFGD----ELVIISDRIKDRTISQIKSNL   72 (182)
Q Consensus        30 ~~~KWTdeEiemLr~aV~rFg~----dL~kIS~~Ik~RTv~QIKs~l   72 (182)
                      +++.||.+|...|+.||..|..    +|.+|++.|..||+.+|+.+.
T Consensus        19 ss~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY   65 (74)
T 4eef_G           19 SGRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHY   65 (74)
T ss_dssp             ---CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGG
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHH
Confidence            4678999999999999999966    599999999999999998764

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=96.90  E-value=0.00049  Score=59.31  Aligned_cols=43  Identities=23%  Similarity=0.294  Sum_probs=39.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhhhh------HHHHHHHhhhhhHHHHHHHHh
Q psy8149          31 GNKWTAEDIEMLKETVRKFGDE------LVIISDRIKDRTISQIKSNLK   73 (182)
Q Consensus        31 ~~KWTdeEiemLr~aV~rFg~d------L~kIS~~Ik~RTv~QIKs~lK   73 (182)
                      .++||+||-+.|.++|++||..      |+.||.++..||-.|||..-+
T Consensus         8 k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~   56 (246)
T 1ign_A            8 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFR   56 (246)
T ss_dssp             CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHH
Confidence            4699999999999999999886      999999999999999997644

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=96.72  E-value=0.002  Score=48.10  Aligned_cols=50  Identities=26%  Similarity=0.484  Sum_probs=44.3

Q ss_pred             CCCCHHHHHHHHHHHHHhhhhHHHHHHHh-----hhhhHHHHHHH---HhhhhhhhcC
Q psy8149          32 NKWTAEDIEMLKETVRKFGDELVIISDRI-----KDRTISQIKSN---LKKKAFEDAG   81 (182)
Q Consensus        32 ~KWTdeEiemLr~aV~rFg~dL~kIS~~I-----k~RTv~QIKs~---lKrK~~edag   81 (182)
                      +.||.+|.+-|-+.+++||-.|-.|++.-     ..||+.+||.-   |-|++....+
T Consensus        31 ~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r~   88 (93)
T 3hm5_A           31 DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRA   88 (93)
T ss_dssp             TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred             CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            69999999999999999999999999999     58999999984   5567766665

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=95.91  E-value=0.0013  Score=60.98  Aligned_cols=37  Identities=22%  Similarity=0.510  Sum_probs=0.0

Q ss_pred             CCCCHHHHHHHHHHHHHhhhhHHHHHHHhhhhhHHHH
Q psy8149          32 NKWTAEDIEMLKETVRKFGDELVIISDRIKDRTISQI   68 (182)
Q Consensus        32 ~KWTdeEiemLr~aV~rFg~dL~kIS~~Ik~RTv~QI   68 (182)
                      ..||++|+..|.+++..||.|+.+|...|.+||+.+|
T Consensus       190 d~WT~eE~~lFe~al~~yGKdF~~I~~~lp~Ksv~e~  226 (482)
T 2xag_B          190 DEWTVEDKVLFEQAFSFHGKTFHRIQQMLPDKSIASL  226 (482)
T ss_dssp             -------------------------------------
T ss_pred             cccCHHHHHHHHHHHHHcCccHHHHHHHcCCCCHHHH
Confidence            4899999999999999999999999999999999998

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=94.71  E-value=0.02  Score=45.36  Aligned_cols=39  Identities=18%  Similarity=0.461  Sum_probs=34.3

Q ss_pred             CCCCHHHHHHHHHHHHHhh---hhHHHHHHH--hhhhhHHHHHH
Q psy8149          32 NKWTAEDIEMLKETVRKFG---DELVIISDR--IKDRTISQIKS   70 (182)
Q Consensus        32 ~KWTdeEiemLr~aV~rFg---~dL~kIS~~--Ik~RTv~QIKs   70 (182)
                      ..||+.|+..|..|+.|||   ++|..|.+.  +..||...|+.
T Consensus         8 ~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~   51 (211)
T 4b4c_A            8 KGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRR   51 (211)
T ss_dssp             CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHH
Confidence            4799999999999999999   469999876  56899999986

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=93.78  E-value=0.13  Score=36.03  Aligned_cols=43  Identities=19%  Similarity=0.338  Sum_probs=35.8

Q ss_pred             CCCCCHHHHHHHHHHHHH----hhh------hHHHHHHHhh----hhhHHHHHHHHh
Q psy8149          31 GNKWTAEDIEMLKETVRK----FGD------ELVIISDRIK----DRTISQIKSNLK   73 (182)
Q Consensus        31 ~~KWTdeEiemLr~aV~r----Fg~------dL~kIS~~Ik----~RTv~QIKs~lK   73 (182)
                      ..+||++|+-.|.++...    |.+      .|..||+.|.    .||..|.+...+
T Consensus         4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~   60 (86)
T 2ebi_A            4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWR   60 (86)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence            479999999999999864    533      7999999998    699999988654

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=92.52  E-value=0.12  Score=38.71  Aligned_cols=48  Identities=25%  Similarity=0.486  Sum_probs=40.8

Q ss_pred             CCCCHHHHHHHHHHHHHhhhhHHHHHHHhh-----hhhHHHHHHH---Hhhhhhhh
Q psy8149          32 NKWTAEDIEMLKETVRKFGDELVIISDRIK-----DRTISQIKSN---LKKKAFED   79 (182)
Q Consensus        32 ~KWTdeEiemLr~aV~rFg~dL~kIS~~Ik-----~RTv~QIKs~---lKrK~~ed   79 (182)
                      ..||-+|.+-|-+.+++|.=+|--|.+.-.     .||+-++|..   |-||+.+.
T Consensus        31 ~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~   86 (93)
T 4iej_A           31 DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANV   86 (93)
T ss_dssp             TTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence            589999999999999999999999999974     7999999975   34454443

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=91.34  E-value=0.11  Score=45.54  Aligned_cols=47  Identities=17%  Similarity=0.372  Sum_probs=41.2

Q ss_pred             CCCCHHHHHHHHHHHHHhhh-hHHHHHHHhhhhhHHHHHHHHhhhhhhhc
Q psy8149          32 NKWTAEDIEMLKETVRKFGD-ELVIISDRIKDRTISQIKSNLKKKAFEDA   80 (182)
Q Consensus        32 ~KWTdeEiemLr~aV~rFg~-dL~kIS~~Ik~RTv~QIKs~lKrK~~eda   80 (182)
                      +-||-.|-..|..|+.+||+ ||..|+..|..+|..+|+...+  +|-+.
T Consensus       111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~--vFw~r  158 (304)
T 1ofc_X          111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNA--VFWER  158 (304)
T ss_dssp             TTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHH--HHHHH
T ss_pred             cccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHH--HHHHh
Confidence            57999999999999999999 5999999999999999988764  44443

>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A

Probab=82.82  E-value=0.75  Score=41.53  Aligned_cols=49  Identities=16%  Similarity=0.358  Sum_probs=42.6

Q ss_pred             CCCCHHHHHHHHHHHHHhhhh-HHHHHHHhh-hhhHHHHHHHHhhhhhhhcCC
Q psy8149          32 NKWTAEDIEMLKETVRKFGDE-LVIISDRIK-DRTISQIKSNLKKKAFEDAGL   82 (182)
Q Consensus        32 ~KWTdeEiemLr~aV~rFg~d-L~kIS~~Ik-~RTv~QIKs~lKrK~~edag~   82 (182)
                      +.|+-.|-..|..|..+||+| +..|+..|. ++|..+|+.-.  ++|=+.+=
T Consensus       124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~--~vFw~Ry~  174 (374)
T 2y9y_A          124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYA--KAFWSNIE  174 (374)
T ss_dssp             CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHH--HHHHHTCS
T ss_pred             cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHH--HHHHHhhh
Confidence            579999999999999999998 999999999 99999999655  35665553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	182
d2iw5b1	65	a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu	8e-07
d1xc5a1	68	a.4.1.3 (A:413-480) Nuclear receptor corepressor 2	3e-06
d2cu7a1	65	a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap	1e-04
d2crga1	57	a.4.1.3 (A:8-64) Metastasis associated protein MTA	2e-04
d1guua_	50	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	8e-04
d1gv2a2	47	a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou	0.001
d1w0ta_	52	a.4.1.4 (A:) DNA-binding domain of human telomeric	0.002
d1gvda_	52	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	0.004

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (100), Expect = 8e-07
 Identities = 13/46 (28%), Positives = 29/46 (63%), Gaps = 3/46 (6%)

Query: 33 KWTAEDIEMLKETVRKFGDELVIISDRIKDRTISQIKS---NLKKK 75
          +WT E+  +  + +RK+G +   ISD I ++++ Q+K+   N +++
Sbjct: 7  RWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 52

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (96), Expect = 3e-06
 Identities = 8/49 (16%), Positives = 21/49 (42%), Gaps = 3/49 (6%)

Query: 30 SGNKWTAEDIEMLKETVRKFGDELVIISDRIKDRTISQIKS---NLKKK 75
            N W+ ++ E  +E   +      +I+  ++ +T+++        KK 
Sbjct: 16 VMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLTKKN 64

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (84), Expect = 1e-04
 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 6/60 (10%)

Query: 33 KWTAEDIEMLKETVRKFGDELVIISDRIKDRTISQIKS------NLKKKAFEDAGLPIQQ 86
          KWT E+ E+ ++ + KFG     IS  I  RT+ Q+KS        K K   D   P Q+
Sbjct: 4  KWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKCGLDKETPNQK 63

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.9 bits (83), Expect = 2e-04
 Identities = 8/40 (20%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 32 NKWTAEDIEMLKETVRKFGDELVIIS-DRIKDRTISQIKS 70
           +W+A +  + +E + K+G +   I  D +  ++++ I  
Sbjct: 2  EEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIE 41

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.0 bits (78), Expect = 8e-04
 Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 1/39 (2%)

Query: 32 NKWTAEDIEMLKETVRKFGD-ELVIISDRIKDRTISQIK 69
           +WT E+ E LK+ V + G  +  +I++ + +RT  Q +
Sbjct: 2  TRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQ 40

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 33.3 bits (76), Expect = 0.001
 Identities = 9/37 (24%), Positives = 19/37 (51%)

Query: 33 KWTAEDIEMLKETVRKFGDELVIISDRIKDRTISQIK 69
           WT E+  ++ +  ++ G+    I+  +  RT + IK
Sbjct: 3  SWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIK 39

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.9 bits (75), Expect = 0.002
 Identities = 12/48 (25%), Positives = 24/48 (50%), Gaps = 6/48 (12%)

Query: 33 KWTAEDIEMLKETVRKFGD---ELVIISDRIKDRTISQIK---SNLKK 74
           W  E+ + L+  VRK+G+     +++  +  +RT   +K     +KK
Sbjct: 4  AWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 32.0 bits (73), Expect = 0.004
 Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 33 KWTAEDIEMLKETVRKFGD-ELVIISDRIKDRTISQIK 69
           WT E+ + L + V+K+G     +I+  +K R   Q +
Sbjct: 5  PWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCR 42

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	182
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	99.08
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	98.97
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	98.84
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	98.83
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	98.64
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	98.57
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	98.52
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	98.5
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	98.44
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	98.44
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	98.35
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	98.23
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	98.12
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	98.1
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	97.6
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	97.45
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	96.79
d1ofcx1	52	SANT domain of the nucleosome remodeling ATPase IS	96.47
d1x58a1	49	Hypothetical protein 4930532d21rik {Mouse (Mus mus	95.76
d1wgxa_	73	Hypothetical protein C14orf106 (KIAA1903) {Human (	89.3

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=1e-10  Score=78.08  Aligned_cols=49  Identities=33%  Similarity=0.474  Sum_probs=43.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHhhhhhhh
Q psy8149          31 GNKWTAEDIEMLKETVRKFGDELVIISDRIKDRTISQIKSNLKKKAFED   79 (182)
Q Consensus        31 ~~KWTdeEiemLr~aV~rFg~dL~kIS~~Ik~RTv~QIKs~lKrK~~ed   79 (182)
                      ..|||++|.++|.++|..||.+|.+||.++.+||..|||++..+..-..
T Consensus         2 ~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~ry~~~~~~~   50 (65)
T d2cu7a1           2 SVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNK   50 (65)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhcchHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            3699999999999999999999999999999999999999876554333

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=2.7e-10  Score=76.48  Aligned_cols=45  Identities=27%  Similarity=0.571  Sum_probs=41.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHhh
Q psy8149          30 SGNKWTAEDIEMLKETVRKFGDELVIISDRIKDRTISQIKSNLKK   74 (182)
Q Consensus        30 ~~~KWTdeEiemLr~aV~rFg~dL~kIS~~Ik~RTv~QIKs~lKr   74 (182)
                      ..++||++|.++|..+|..||.||..||.+|.+||..|||..-.+
T Consensus         4 ~~~~WT~eE~~~f~~~~~~~G~~w~~Ia~~~~~kt~~q~~~~y~~   48 (65)
T d2iw5b1           4 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVN   48 (65)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCchHHHHHHHcCCCCHHHHHHHHHH
Confidence            457999999999999999999999999999999999999997653

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=98.84  E-value=1.5e-09  Score=72.70  Aligned_cols=43  Identities=14%  Similarity=0.448  Sum_probs=40.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhhhh----HHHHHHHhhhhhHHHHHHHHh
Q psy8149          31 GNKWTAEDIEMLKETVRKFGDE----LVIISDRIKDRTISQIKSNLK   73 (182)
Q Consensus        31 ~~KWTdeEiemLr~aV~rFg~d----L~kIS~~Ik~RTv~QIKs~lK   73 (182)
                      |.+||.+|-++|.+||..||.+    |.+||.+|.+||..|++.+-+
T Consensus         1 G~~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l~gRt~~qc~~r~~   47 (63)
T d2cjja1           1 GRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYE   47 (63)
T ss_dssp             CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHH
T ss_pred             CcCCCHHHHHHHHHHHHHHCCCCchHHHHHHHHcCCCCHHHHHHHHH
Confidence            5789999999999999999975    999999999999999999874

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=1.8e-09  Score=69.27  Aligned_cols=42  Identities=19%  Similarity=0.275  Sum_probs=38.8

Q ss_pred             CCCCHHHHHHHHHHHHHhhh-hHHHHHHHhhhhhHHHHHHHHh
Q psy8149          32 NKWTAEDIEMLKETVRKFGD-ELVIISDRIKDRTISQIKSNLK   73 (182)
Q Consensus        32 ~KWTdeEiemLr~aV~rFg~-dL~kIS~~Ik~RTv~QIKs~lK   73 (182)
                      +-||++|.++|.++|.+||. +|++||.+|.+||..|+|.+-.
T Consensus         2 ~~Wt~eEd~~L~~~v~~~G~~nW~~Ia~~~~~Rt~~Qcr~r~~   44 (47)
T d1x41a1           2 PSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYM   44 (47)
T ss_dssp             SSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHCCccHHHHHHHcCCCCHHHHHHHHH
Confidence            35999999999999999995 7999999999999999998764

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=2.6e-09  Score=72.20  Aligned_cols=42  Identities=14%  Similarity=0.321  Sum_probs=39.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHH
Q psy8149          31 GNKWTAEDIEMLKETVRKFGDELVIISDRIKDRTISQIKSNL   72 (182)
Q Consensus        31 ~~KWTdeEiemLr~aV~rFg~dL~kIS~~Ik~RTv~QIKs~l   72 (182)
                      ...||++|.+.|..+|..||.||.+||.+|.+||..||+.+-
T Consensus        17 ~~~WT~eE~~~f~~~~~~~G~~w~~Ia~~~~~rt~~q~~~~y   58 (68)
T d1xc5a1          17 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYY   58 (68)
T ss_dssp             TTCCCTTTHHHHHHHHHHTTSCSSSHHHHTTTSCHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCCcHHHHHHHcCCCCHHHHHHHH
Confidence            367999999999999999999999999999999999999864

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.57  E-value=2.5e-08  Score=64.12  Aligned_cols=43  Identities=30%  Similarity=0.488  Sum_probs=40.0

Q ss_pred             CCCCHHHHHHHHHHHHHhhh-hHHHHHHHhhhhhHHHHHHHHhh
Q psy8149          32 NKWTAEDIEMLKETVRKFGD-ELVIISDRIKDRTISQIKSNLKK   74 (182)
Q Consensus        32 ~KWTdeEiemLr~aV~rFg~-dL~kIS~~Ik~RTv~QIKs~lKr   74 (182)
                      ++||.+|-++|+++|.+||. +|.+||..|.+||..|+|..-.+
T Consensus         2 ~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~   45 (50)
T d1guua_           2 TRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQK   45 (50)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHh
Confidence            68999999999999999995 79999999999999999987655

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.52  E-value=2.3e-08  Score=66.33  Aligned_cols=39  Identities=18%  Similarity=0.477  Sum_probs=36.8

Q ss_pred             CCCHHHHHHHHHHHHHhhhhHHHHHHH-hhhhhHHHHHHH
Q psy8149          33 KWTAEDIEMLKETVRKFGDELVIISDR-IKDRTISQIKSN   71 (182)
Q Consensus        33 KWTdeEiemLr~aV~rFg~dL~kIS~~-Ik~RTv~QIKs~   71 (182)
                      .||++|+.+|.+|+..||.||.+|+.. |.+||+.||...
T Consensus         3 ~WT~eE~~~F~~~~~~yGKdf~~I~~~~v~~Ks~~~~v~f   42 (57)
T d2crga1           3 EWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEY   42 (57)
T ss_dssp             CCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHcccHHHHHHHHcCCCCHHHHHHH
Confidence            699999999999999999999999985 799999999875

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=3.8e-08  Score=65.00  Aligned_cols=44  Identities=11%  Similarity=0.255  Sum_probs=40.1

Q ss_pred             CCCCCCHHHHHHHHHHHHHhhh----hHHHHHHHhhhhhHHHHHHHHh
Q psy8149          30 SGNKWTAEDIEMLKETVRKFGD----ELVIISDRIKDRTISQIKSNLK   73 (182)
Q Consensus        30 ~~~KWTdeEiemLr~aV~rFg~----dL~kIS~~Ik~RTv~QIKs~lK   73 (182)
                      ....||.+|-++|++||..||.    .|.+||.+|.+||..|++..-|
T Consensus        11 ~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l~~Rt~~qc~~R~~   58 (60)
T d2cqra1          11 AEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYK   58 (60)
T ss_dssp             SSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHHHcCCccchHHHHHHHHcCCCCHHHHHHHHH
Confidence            3578999999999999999986    5999999999999999998765

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.44  E-value=5e-08  Score=62.52  Aligned_cols=42  Identities=21%  Similarity=0.447  Sum_probs=39.7

Q ss_pred             CCCCHHHHHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHh
Q psy8149          32 NKWTAEDIEMLKETVRKFGDELVIISDRIKDRTISQIKSNLK   73 (182)
Q Consensus        32 ~KWTdeEiemLr~aV~rFg~dL~kIS~~Ik~RTv~QIKs~lK   73 (182)
                      +.||+||-+.|.++|..||..|.+|+.++..||..|||..-.
T Consensus         2 ~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~gRt~~~~knr~~   43 (47)
T d1gv2a2           2 TSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWN   43 (47)
T ss_dssp             CCCCHHHHHHHHHHHHHHSSCHHHHHTTCTTCCHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHhhHHHHHHhHcCCCCHHHHHHHHH
Confidence            579999999999999999999999999999999999998654

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.44  E-value=6.4e-08  Score=62.95  Aligned_cols=44  Identities=25%  Similarity=0.447  Sum_probs=40.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhh-hhHHHHHHHhhhhhHHHHHHHHhh
Q psy8149          31 GNKWTAEDIEMLKETVRKFG-DELVIISDRIKDRTISQIKSNLKK   74 (182)
Q Consensus        31 ~~KWTdeEiemLr~aV~rFg-~dL~kIS~~Ik~RTv~QIKs~lKr   74 (182)
                      .|.||.+|=++|+++|.+|| .+|..||..+.+||..|+|..-.+
T Consensus         3 rg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qc~~Rw~~   47 (52)
T d1gvda_           3 KGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHN   47 (52)
T ss_dssp             CCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHh
Confidence            47899999999999999999 579999999999999999987553

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.35  E-value=2.9e-07  Score=63.09  Aligned_cols=46  Identities=26%  Similarity=0.265  Sum_probs=39.9

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhhhhH---HHHHHHh--hhhhHHHHHHHHhh
Q psy8149          29 PSGNKWTAEDIEMLKETVRKFGDEL---VIISDRI--KDRTISQIKSNLKK   74 (182)
Q Consensus        29 ~~~~KWTdeEiemLr~aV~rFg~dL---~kIS~~I--k~RTv~QIKs~lKr   74 (182)
                      ...-+||+|+|++|.+||..+|.|+   .+|.+.|  .++|..||++||-|
T Consensus         5 k~R~~WT~elH~~Fv~Av~~lG~~~atpk~I~~~m~v~~lT~~qV~SHlQK   55 (64)
T d1irza_           5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQK   55 (64)
T ss_dssp             CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCccccchHHHHHHcCCCCCCHHHHHHHHHH
Confidence            3456899999999999999999998   6888885  56699999999965

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=6.9e-07  Score=60.31  Aligned_cols=48  Identities=23%  Similarity=0.484  Sum_probs=41.1

Q ss_pred             CCCCHHHHHHHHHHHHHh----hhhHHHHHHHhhhhhHHHHHHHHhhhhhhhcCC
Q psy8149          32 NKWTAEDIEMLKETVRKF----GDELVIISDRIKDRTISQIKSNLKKKAFEDAGL   82 (182)
Q Consensus        32 ~KWTdeEiemLr~aV~rF----g~dL~kIS~~Ik~RTv~QIKs~lKrK~~edag~   82 (182)
                      ++||++|...|..||..|    -++|.+|++.| .||+.||...+|  .+.+...
T Consensus         2 ~eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~v-gkt~~ev~~~~k--~l~e~~~   53 (59)
T d2cqqa1           2 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAK--QLKDSVT   53 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHH--HHHHSCC
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHH-CCCHHHHHHHHH--HHHHhcc
Confidence            589999999999999999    46799999999 799999999886  3444443

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=1e-06  Score=57.00  Aligned_cols=41  Identities=27%  Similarity=0.408  Sum_probs=37.1

Q ss_pred             CCCCHHHHHHHHHHHHHhhh-hHHHHHHHh--hhhhHHHHHHHH
Q psy8149          32 NKWTAEDIEMLKETVRKFGD-ELVIISDRI--KDRTISQIKSNL   72 (182)
Q Consensus        32 ~KWTdeEiemLr~aV~rFg~-dL~kIS~~I--k~RTv~QIKs~l   72 (182)
                      +.||++|-+.|.++|.+||. .|..|+..+  ..||-.|||..-
T Consensus         3 ~~WT~eED~~L~~~v~~~G~~~W~~I~~~~~~~~Rt~~q~r~Rw   46 (52)
T d1w0ta_           3 QAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRW   46 (52)
T ss_dssp             CCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCHHHHHhhcCCCCCCHHHHHHHH
Confidence            58999999999999999997 899999984  599999999754

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=1.1e-06  Score=57.38  Aligned_cols=42  Identities=36%  Similarity=0.609  Sum_probs=37.9

Q ss_pred             CCCCHHHHHHHHHHHHHhhh-hHHHHHHH--hhhhhHHHHHHHHh
Q psy8149          32 NKWTAEDIEMLKETVRKFGD-ELVIISDR--IKDRTISQIKSNLK   73 (182)
Q Consensus        32 ~KWTdeEiemLr~aV~rFg~-dL~kIS~~--Ik~RTv~QIKs~lK   73 (182)
                      .+||++|-+.|+++|.+||. .|..|+..  +..||..|||..-+
T Consensus         3 ~~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~Rt~~q~k~Rwr   47 (55)
T d1w0ua_           3 QKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWR   47 (55)
T ss_dssp             CCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhCCChHHHHHhhcCCCCcCHHHHHHHHH
Confidence            58999999999999999995 89999998  55999999998764

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.60  E-value=1.7e-05  Score=56.20  Aligned_cols=45  Identities=22%  Similarity=0.252  Sum_probs=41.1

Q ss_pred             CCCCHHHHHHHHHHHHHhhhh------HHHHHHHhhhhhHHHHHHHHhhhh
Q psy8149          32 NKWTAEDIEMLKETVRKFGDE------LVIISDRIKDRTISQIKSNLKKKA   76 (182)
Q Consensus        32 ~KWTdeEiemLr~aV~rFg~d------L~kIS~~Ik~RTv~QIKs~lKrK~   76 (182)
                      +.||.+|=++|+.+|.+||..      |.+||..|..||..|+|..-+..+
T Consensus         2 ~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~lpgRt~~qcr~Rw~~~L   52 (86)
T d1igna1           2 ASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYL   52 (86)
T ss_dssp             CCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTT
T ss_pred             CCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHHHcCCCCHHHHHHHHHHHc
Confidence            689999999999999999975      999999999999999998776544

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=97.45  E-value=4.4e-05  Score=53.00  Aligned_cols=42  Identities=24%  Similarity=0.382  Sum_probs=37.5

Q ss_pred             CCCHHHHHHHHHHHHHhhh-hHHHHHHH----hhhhhHHHHHHHHhh
Q psy8149          33 KWTAEDIEMLKETVRKFGD-ELVIISDR----IKDRTISQIKSNLKK   74 (182)
Q Consensus        33 KWTdeEiemLr~aV~rFg~-dL~kIS~~----Ik~RTv~QIKs~lKr   74 (182)
                      .||.+|-+.|.++|.+||. .|..|+..    +..||..|+|..-+.
T Consensus         2 ~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~~~Rt~~qck~RWrn   48 (83)
T d2ckxa1           2 PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKT   48 (83)
T ss_dssp             CCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCcccHHHHHHHHHhhccCCCHHHHHHHHHH
Confidence            6999999999999999997 89999987    468999999976654

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.79  E-value=0.001  Score=48.35  Aligned_cols=43  Identities=16%  Similarity=0.358  Sum_probs=39.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhhhh---HHHHHHHhhhhhHHHHHHHHh
Q psy8149          31 GNKWTAEDIEMLKETVRKFGDE---LVIISDRIKDRTISQIKSNLK   73 (182)
Q Consensus        31 ~~KWTdeEiemLr~aV~rFg~d---L~kIS~~Ik~RTv~QIKs~lK   73 (182)
                      -..||.||=..|...++++|..   |++|+..++.||..|||.-.+
T Consensus        33 ~~~WTrEEDriIL~~~q~~G~~~~tw~~Ia~~L~~Rs~~qvr~Rf~   78 (95)
T d1ug2a_          33 VVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFR   78 (95)
T ss_dssp             CSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHH
T ss_pred             cCCcCHHHHHHHHHHHHHcCCcHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            3689999999999999999977   999999999999999998765

>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: SANT domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.47  E-value=0.00071  Score=44.47  Aligned_cols=40  Identities=18%  Similarity=0.395  Sum_probs=37.3

Q ss_pred             CCHHHHHHHHHHHHHhhh-hHHHHHHHhhhhhHHHHHHHHh
Q psy8149          34 WTAEDIEMLKETVRKFGD-ELVIISDRIKDRTISQIKSNLK   73 (182)
Q Consensus        34 WTdeEiemLr~aV~rFg~-dL~kIS~~Ik~RTv~QIKs~lK   73 (182)
                      |+..|...|..|..+||+ |+..|+..|.++|..+|+.-.|
T Consensus         2 WnrrdF~~Fi~a~ekyGR~d~~~Ia~e~~~Kt~eEV~~Y~~   42 (52)
T d1ofcx1           2 WTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNA   42 (52)
T ss_dssp             CCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhhHHHHHHHhcCCCHHHHHHHHH
Confidence            999999999999999996 7999999999999999987654

>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Hypothetical protein 4930532d21rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.76  E-value=0.0029  Score=41.13  Aligned_cols=27  Identities=22%  Similarity=0.311  Sum_probs=24.9

Q ss_pred             CCCHHHHHHHHHHHHHhhhhHHHHHHH
Q psy8149          33 KWTAEDIEMLKETVRKFGDELVIISDR   59 (182)
Q Consensus        33 KWTdeEiemLr~aV~rFg~dL~kIS~~   59 (182)
                      -||+||+.-|-++|++||..||.|.=.
T Consensus         3 nft~eEv~YL~~GVK~~G~~WNsILWs   29 (49)
T d1x58a1           3 DFTKEEVNYLFHGVKTMGNHWNSILWS   29 (49)
T ss_dssp             SCCHHHHHHHHHHHHHHCSCHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhcchhhhhhhc
Confidence            599999999999999999999999754

>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Hypothetical protein C14orf106 (KIAA1903)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.30  E-value=0.21  Score=34.48  Aligned_cols=46  Identities=11%  Similarity=0.299  Sum_probs=37.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHhh----hhHHHHHHHhhhhhHHHHHHHHhhhhhhh
Q psy8149          30 SGNKWTAEDIEMLKETVRKFG----DELVIISDRIKDRTISQIKSNLKKKAFED   79 (182)
Q Consensus        30 ~~~KWTdeEiemLr~aV~rFg----~dL~kIS~~Ik~RTv~QIKs~lKrK~~ed   79 (182)
                      ..++|+++|..+|+.|+.-+-    .=|.+++..|.+||.-+-    .+|..++
T Consensus         7 ~d~~W~e~ELqkLh~A~~SlPkh~~gfW~~VA~~VGtRSaeEC----Q~ky~~~   56 (73)
T d1wgxa_           7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEEC----QRKYMEN   56 (73)
T ss_dssp             SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHH----HHHHHHS
T ss_pred             cccccCHHHHHHHHHHHHhcCCCCCccHHHHHHHHccCCHHHH----HHHHHhC
Confidence            457999999999999999882    239999999999998764    4566655