Psyllid ID: psy8172

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------10
Protein Sequence
MFALMNSNLQPPDPKSTVLTTTDYTSEVGFWKQTTRPSNTALSSMEQVKAYLQTQGTCKCGLECPLQCDSVFSFDAKPRERATEVHEPSEPAVCDLDN
Secondary Structure (PSIPRED)
ccccccccccccccccEEEEEcccccccccEEEEEcccccccccHHHHHHHHHHccEEccccccccccccEEEccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEcccccccccccEEEEcccccHHEEEEEccccccccccccHHHHHHHHHcccccccccccccccccEEccccccccccccccccccccEEcccc
Coil and Loop (DISEMBL)
mfalmnsnlqppdpkstvltttdytsevgfwkqttrpsntaLSSMEQVKAYLQTqgtckcglecplqcdsvfsfdakpreratevhepsepavcdldn
Flexible Loop (DISEMBL)
mfalmnsnlqppdpkstvLTTTDYTSEVGFWKQTTRPSNTALSSMEQVKAYLQTQGTCKCGLECPLQCDSVFSFDAKPREratevhepsepavcdldn
Low Complexity Region (SEG)
MFALMNSNLQPPDPKSTVLTTTDYTSEVGFWKQTTRPSNTALSSMEQVKAYLQTQGTCKCGLECPLQCDSVFSFDAKPRERATEVHEPSEPAVCDLDN
Disordered region (IsUnstruct)
********************TTDYTSEVGFWKQ*************QVKAYLQTQGTCKCGLECPLQCDSVFSF************************
Disordered Region (DISOPRED)
***************STVLTTTDYTSEVGFWKQTTRPSNTALSSMEQVKAYLQTQGTCKCGLECPLQCDSVFSFDA***************AVCDL**
Disordered Region (DISEMBL)
*************PKSTVLTTTDYTSEVGFWKQTTRPSNTALSSMEQVKAYLQTQGTCKCGLECPLQCDSVFSFDAK*********************
Disordered Region (DISPRO)
MFALMNSNLQPPDPKSTVLTTTDYTSEVGFWKQTTRPSNTALSSMEQVKAYLQTQGTCKCGLECPLQCDSVFSFDAKPR*******************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MFALMNSNLQPPDPKSTVLTTTDYTSEVGFWKQTTRPSNTALSSMEQVKAYLQTQGTCKCGLECPLQCDSVFSFDAKPRERATEVHEPSEPAVCDLDN
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	98	2.2.26 [Sep-21-2011]
Q96DN6	1003	Methyl-CpG-binding domain	yes	N/A	0.397	0.038	0.641	3e-09
Q3TY92	1003	Methyl-CpG-binding domain	yes	N/A	0.397	0.038	0.641	4e-09
Q9P267	1494	Methyl-CpG-binding domain	no	N/A	0.489	0.032	0.58	1e-08
B1AYB6	1498	Methyl-CpG-binding domain	no	N/A	0.489	0.032	0.56	3e-08

>sp|Q96DN6|MBD6_HUMAN Methyl-CpG-binding domain protein 6 OS=Homo sapiens GN=MBD6 PE=2 SV=2

 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 25/39 (64%), Positives = 30/39 (76%)

Query: 37 PSNTALSSMEQVKAYLQTQGTCKCGLECPLQCDSVFSFD 75
          PS T LSS+EQ ++YL + GTCKCGLECPL    VF+FD
Sbjct: 39 PSGTELSSLEQTRSYLLSDGTCKCGLECPLNVPKVFNFD 77

Binds to heterochromatin. Does not interact with either methylated or unmethylated DNA (in vitro).
Homo sapiens (taxid: 9606)

>sp|Q3TY92|MBD6_MOUSE Methyl-CpG-binding domain protein 6 OS=Mus musculus GN=Mbd6 PE=2 SV=2

 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 25/39 (64%), Positives = 30/39 (76%)

Query: 37 PSNTALSSMEQVKAYLQTQGTCKCGLECPLQCDSVFSFD 75
          PS T LSS+EQ ++YL + GTCKCGLECPL    VF+FD
Sbjct: 41 PSGTELSSLEQTRSYLLSDGTCKCGLECPLNVPKVFNFD 79

Binds to heterochromatin. Does not interact with either methylated or unmethylated DNA (in vitro).

Mus musculus (taxid: 10090)

>sp|Q9P267|MBD5_HUMAN Methyl-CpG-binding domain protein 5 OS=Homo sapiens GN=MBD5 PE=1 SV=3

 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/50 (58%), Positives = 34/50 (68%), Gaps = 2/50 (4%)

Query: 37 PSNTALSSMEQVKAYLQTQGTCKCGLECPLQCDSVFSFD--AKPRERATE 84
          PS + LS +EQVK YL T GTCKCGLECPL    VF+FD  A  ++R  E
Sbjct: 39 PSGSLLSCLEQVKTYLLTDGTCKCGLECPLILPKVFNFDPGAAVKQRTAE 88

Binds to heterochromatin. Does not interact with either methylated or unmethylated DNA (in vitro).

Homo sapiens (taxid: 9606)

>sp|B1AYB6|MBD5_MOUSE Methyl-CpG-binding domain protein 5 OS=Mus musculus GN=Mbd5 PE=2 SV=1

 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/50 (56%), Positives = 34/50 (68%), Gaps = 2/50 (4%)

Query: 37 PSNTALSSMEQVKAYLQTQGTCKCGLECPLQCDSVFSFD--AKPRERATE 84
          PS + LS ++QVK YL T GTCKCGLECPL    VF+FD  A  ++R  E
Sbjct: 39 PSGSLLSCLDQVKTYLLTDGTCKCGLECPLILPKVFNFDPGAAVKQRTAE 88

Binds to heterochromatin. Does not interact with either methylated or unmethylated DNA (in vitro).

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	98
328718000	1341	PREDICTED: hypothetical protein LOC10016	0.418	0.030	0.731	1e-11
242011645	1690	conserved hypothetical protein [Pediculu	0.602	0.034	0.525	3e-11
395744516	1044	PREDICTED: LOW QUALITY PROTEIN: methyl-C	0.479	0.045	0.574	2e-08
383847152	2057	PREDICTED: uncharacterized protein LOC10	0.448	0.021	0.630	2e-08
307184791	396	Methyl-CpG-binding domain protein 5 [Cam	0.418	0.103	0.658	2e-08
328785762	2081	PREDICTED: hypothetical protein LOC40880	0.418	0.019	0.658	2e-08
91077136	1730	PREDICTED: similar to rCG37751 [Triboliu	0.418	0.023	0.707	3e-08
380021683	546	PREDICTED: uncharacterized protein LOC10	0.489	0.087	0.604	4e-08
301608308	1323	PREDICTED: hypothetical protein LOC10048	0.418	0.030	0.634	5e-08
186910204	1365	methyl-CpG binding domain protein 6 [Xen	0.418	0.030	0.634	5e-08

>gi|328718000|ref|XP_001952725.2| PREDICTED: hypothetical protein LOC100167706 [Acyrthosiphon pisum]

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 30/41 (73%), Positives = 35/41 (85%)

Query: 37  PSNTALSSMEQVKAYLQTQGTCKCGLECPLQCDSVFSFDAK 77
           PSN  L+S++Q K YLQTQGTCKCGLECP QC+ VF+FDAK
Sbjct: 91  PSNAVLNSLDQAKIYLQTQGTCKCGLECPFQCEHVFNFDAK 131

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242011645|ref|XP_002426558.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212510695|gb|EEB13820.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score = 72.4 bits (176), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 31/59 (52%), Positives = 43/59 (72%)

Query: 37 PSNTALSSMEQVKAYLQTQGTCKCGLECPLQCDSVFSFDAKPRERATEVHEPSEPAVCD 95
          P+N ALSS+EQ+K YLQT GTCKCGLECP+ C+SVF+F+ K   R  +  +  +  +C+
Sbjct: 3  PTNIALSSIEQIKMYLQTMGTCKCGLECPVNCESVFNFNPKVISRPWDSSDSEQTRLCN 61

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|395744516|ref|XP_002823479.2| PREDICTED: LOW QUALITY PROTEIN: methyl-CpG-binding domain protein 6 [Pongo abelii]

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/47 (57%), Positives = 32/47 (68%)

Query: 29 GFWKQTTRPSNTALSSMEQVKAYLQTQGTCKCGLECPLQCDSVFSFD 75
          G      RPS T LSS+EQ ++YL + GTCKCGLECPL    VF+FD
Sbjct: 50 GRPNHGPRPSGTELSSLEQTRSYLLSDGTCKCGLECPLNVPKVFNFD 96

Source: Pongo abelii

Species: Pongo abelii

Genus: Pongo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|383847152|ref|XP_003699219.1| PREDICTED: uncharacterized protein LOC100879726 [Megachile rotundata]

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/46 (63%), Positives = 37/46 (80%), Gaps = 2/46 (4%)

Query: 37 PSNTALSSMEQVKAYLQTQGTCKCGLECPLQCDSVFSFDAKPRERA 82
          PS+TAL S++Q+K YL T GTCKCGLECPL+ + VF+FD  P+E A
Sbjct: 3  PSSTALGSLDQLKEYLTTVGTCKCGLECPLRPEQVFNFD--PKELA 46

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307184791|gb|EFN71105.1| Methyl-CpG-binding domain protein 5 [Camponotus floridanus]

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/41 (65%), Positives = 34/41 (82%)

Query: 37  PSNTALSSMEQVKAYLQTQGTCKCGLECPLQCDSVFSFDAK 77
           PS+TAL S++Q+K YL T GTCKCGLECPL+ + VF+FD K
Sbjct: 213 PSSTALGSLDQLKEYLTTVGTCKCGLECPLRPEQVFNFDPK 253

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328785762|ref|XP_392332.4| PREDICTED: hypothetical protein LOC408801, partial [Apis mellifera]

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/41 (65%), Positives = 34/41 (82%)

Query: 37 PSNTALSSMEQVKAYLQTQGTCKCGLECPLQCDSVFSFDAK 77
          PS+TAL S++Q+K YL T GTCKCGLECPL+ + VF+FD K
Sbjct: 1  PSSTALGSLDQLKEYLTTVGTCKCGLECPLRPEQVFNFDPK 41

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91077136|ref|XP_971386.1| PREDICTED: similar to rCG37751 [Tribolium castaneum] gi|270001717|gb|EEZ98164.1| hypothetical protein TcasGA2_TC000591 [Tribolium castaneum]

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/41 (70%), Positives = 32/41 (78%)

Query: 37  PSNTALSSMEQVKAYLQTQGTCKCGLECPLQCDSVFSFDAK 77
           PSNTALSS EQVK YL T GTCKCGLEC  + D+ F+FD K
Sbjct: 188 PSNTALSSPEQVKEYLLTSGTCKCGLECHFKYDNTFNFDPK 228

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380021683|ref|XP_003694688.1| PREDICTED: uncharacterized protein LOC100871501 [Apis florea]

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 29/48 (60%), Positives = 37/48 (77%)

Query: 37  PSNTALSSMEQVKAYLQTQGTCKCGLECPLQCDSVFSFDAKPRERATE 84
           PS+TAL S++Q+K YL T GTCKCGLECPL+ + VF+FD K +   TE
Sbjct: 469 PSSTALGSLDQLKEYLTTVGTCKCGLECPLRPEQVFNFDPKDKILLTE 516

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|301608308|ref|XP_002933744.1| PREDICTED: hypothetical protein LOC100485569 [Xenopus (Silurana) tropicalis]

 Score = 62.0 bits (149), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 26/41 (63%), Positives = 32/41 (78%)

Query: 37 PSNTALSSMEQVKAYLQTQGTCKCGLECPLQCDSVFSFDAK 77
          PS T L+SM+Q++AYL T GTCKCGLECPL    VF+FD +
Sbjct: 39 PSGTVLTSMDQLRAYLVTDGTCKCGLECPLNIYKVFNFDPR 79

Source: Xenopus (Silurana) tropicalis

Species: Xenopus (Silurana) tropicalis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|186910204|ref|NP_001119549.1| methyl-CpG binding domain protein 6 [Xenopus (Silurana) tropicalis] gi|183985922|gb|AAI66190.1| mbd6 protein [Xenopus (Silurana) tropicalis]

 Score = 61.6 bits (148), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 26/41 (63%), Positives = 32/41 (78%)

Query: 37 PSNTALSSMEQVKAYLQTQGTCKCGLECPLQCDSVFSFDAK 77
          PS T L+SM+Q++AYL T GTCKCGLECPL    VF+FD +
Sbjct: 39 PSGTVLTSMDQLRAYLVTDGTCKCGLECPLNIYKVFNFDPR 79

Source: Xenopus (Silurana) tropicalis

Species: Xenopus (Silurana) tropicalis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	98
ZFIN|ZDB-GENE-070209-125	792	zgc:158479 "zgc:158479" [Danio	0.489	0.060	0.58	4.9e-10
UNIPROTKB|F8VU14	148	MBD6 "Methyl-CpG-binding domai	0.397	0.263	0.641	6.6e-10
UNIPROTKB|H0YHD1	177	MBD6 "Methyl-CpG-binding domai	0.397	0.220	0.641	6.6e-10
UNIPROTKB|I3LDD3	269	I3LDD3 "Uncharacterized protei	0.397	0.144	0.641	1.5e-09
UNIPROTKB|F1NE18	1755	F1NE18 "Uncharacterized protei	0.489	0.027	0.58	1.5e-08
UNIPROTKB|Q9P267	1494	MBD5 "Methyl-CpG-binding domai	0.489	0.032	0.58	1.6e-08
UNIPROTKB|E1BPU6	1498	MBD5 "Uncharacterized protein"	0.489	0.032	0.58	1.6e-08
UNIPROTKB|F1PJZ2	1500	MBD5 "Uncharacterized protein"	0.489	0.032	0.58	1.6e-08
UNIPROTKB|Q96DN6	1003	MBD6 "Methyl-CpG-binding domai	0.397	0.038	0.641	1.6e-08
MGI|MGI:106378	1003	Mbd6 "methyl-CpG binding domai	0.397	0.038	0.641	1.6e-08

ZFIN|ZDB-GENE-070209-125 zgc:158479 "zgc:158479" [Danio rerio (taxid:7955)]

 Score = 146 (56.5 bits), Expect = 4.9e-10, Sum P(2) = 4.9e-10
 Identities = 29/50 (58%), Positives = 35/50 (70%)

Query:    37 PSNTALSSMEQVKAYLQTQGTCKCGLECPLQCDSVFSFD--AKPRERATE 84
             PS + LS +EQVK+YL T GTCKCGLECPL    VF+FD  A  ++R  E
Sbjct:    32 PSGSVLSCLEQVKSYLLTDGTCKCGLECPLILPKVFNFDPGAAVKQRTAE 81

GO:0005634 "nucleus" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F8VU14 MBD6 "Methyl-CpG-binding domain protein 6" [Homo sapiens (taxid:9606)]

 Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
 Identities = 25/39 (64%), Positives = 30/39 (76%)

Query:    37 PSNTALSSMEQVKAYLQTQGTCKCGLECPLQCDSVFSFD 75
             PS T LSS+EQ ++YL + GTCKCGLECPL    VF+FD
Sbjct:    39 PSGTELSSLEQTRSYLLSDGTCKCGLECPLNVPKVFNFD 77

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|H0YHD1 MBD6 "Methyl-CpG-binding domain protein 6" [Homo sapiens (taxid:9606)]

 Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
 Identities = 25/39 (64%), Positives = 30/39 (76%)

Query:    37 PSNTALSSMEQVKAYLQTQGTCKCGLECPLQCDSVFSFD 75
             PS T LSS+EQ ++YL + GTCKCGLECPL    VF+FD
Sbjct:    34 PSGTELSSLEQTRSYLLSDGTCKCGLECPLNVPKVFNFD 72

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|I3LDD3 I3LDD3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 142 (55.0 bits), Expect = 1.5e-09, P = 1.5e-09
 Identities = 25/39 (64%), Positives = 30/39 (76%)

Query:    37 PSNTALSSMEQVKAYLQTQGTCKCGLECPLQCDSVFSFD 75
             PS T LSS+EQ ++YL + GTCKCGLECPL    VF+FD
Sbjct:    39 PSGTELSSLEQTRSYLLSDGTCKCGLECPLNVPKVFNFD 77

GO:0005634 "nucleus" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|F1NE18 F1NE18 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 145 (56.1 bits), Expect = 1.5e-08, P = 1.5e-08
 Identities = 29/50 (58%), Positives = 34/50 (68%)

Query:    37 PSNTALSSMEQVKAYLQTQGTCKCGLECPLQCDSVFSFD--AKPRERATE 84
             PS + LS +EQVK YL T GTCKCGLECPL    VF+FD  A  ++R  E
Sbjct:    59 PSGSLLSCLEQVKTYLLTDGTCKCGLECPLVLPKVFNFDPGAAVKQRTAE 108

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

UNIPROTKB|Q9P267 MBD5 "Methyl-CpG-binding domain protein 5" [Homo sapiens (taxid:9606)]

 Score = 144 (55.7 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 29/50 (58%), Positives = 34/50 (68%)

Query:    37 PSNTALSSMEQVKAYLQTQGTCKCGLECPLQCDSVFSFD--AKPRERATE 84
             PS + LS +EQVK YL T GTCKCGLECPL    VF+FD  A  ++R  E
Sbjct:    39 PSGSLLSCLEQVKTYLLTDGTCKCGLECPLILPKVFNFDPGAAVKQRTAE 88

GO:0005634 "nucleus" evidence=IEA

GO:0005694 "chromosome" evidence=IEA

GO:0003682 "chromatin binding" evidence=IDA

GO:0003677 "DNA binding" evidence=IDA

UNIPROTKB|E1BPU6 MBD5 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 144 (55.7 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 29/50 (58%), Positives = 34/50 (68%)

Query:    37 PSNTALSSMEQVKAYLQTQGTCKCGLECPLQCDSVFSFD--AKPRERATE 84
             PS + LS +EQVK YL T GTCKCGLECPL    VF+FD  A  ++R  E
Sbjct:    39 PSGSLLSCLEQVKTYLLTDGTCKCGLECPLILPKVFNFDPGAAVKQRTAE 88

GO:0003682 "chromatin binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|F1PJZ2 MBD5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 144 (55.7 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 29/50 (58%), Positives = 34/50 (68%)

Query:    37 PSNTALSSMEQVKAYLQTQGTCKCGLECPLQCDSVFSFD--AKPRERATE 84
             PS + LS +EQVK YL T GTCKCGLECPL    VF+FD  A  ++R  E
Sbjct:    39 PSGSLLSCLEQVKTYLLTDGTCKCGLECPLILPKVFNFDPGAAVKQRTAE 88

GO:0005634 "nucleus" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|Q96DN6 MBD6 "Methyl-CpG-binding domain protein 6" [Homo sapiens (taxid:9606)]

 Score = 142 (55.0 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 25/39 (64%), Positives = 30/39 (76%)

Query:    37 PSNTALSSMEQVKAYLQTQGTCKCGLECPLQCDSVFSFD 75
             PS T LSS+EQ ++YL + GTCKCGLECPL    VF+FD
Sbjct:    39 PSGTELSSLEQTRSYLLSDGTCKCGLECPLNVPKVFNFD 77

GO:0005694 "chromosome" evidence=IEA

GO:0003677 "DNA binding" evidence=IDA

GO:0003682 "chromatin binding" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

MGI|MGI:106378 Mbd6 "methyl-CpG binding domain protein 6" [Mus musculus (taxid:10090)]

 Score = 142 (55.0 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 25/39 (64%), Positives = 30/39 (76%)

Query:    37 PSNTALSSMEQVKAYLQTQGTCKCGLECPLQCDSVFSFD 75
             PS T LSS+EQ ++YL + GTCKCGLECPL    VF+FD
Sbjct:    41 PSGTELSSLEQTRSYLLSDGTCKCGLECPLNVPKVFNFD 79

GO:0003677 "DNA binding" evidence=IEA

GO:0003682 "chromatin binding" evidence=ISO

GO:0005634 "nucleus" evidence=IEA

GO:0005694 "chromosome" evidence=IEA

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	98
smart00391	77	smart00391, MBD, Methyl-CpG binding domain	3e-04

>gnl|CDD|128673 smart00391, MBD, Methyl-CpG binding domain

 Score = 35.8 bits (83), Expect = 3e-04
 Identities = 12/41 (29%), Positives = 15/41 (36%), Gaps = 7/41 (17%)

Query: 37 PSNTALSSMEQVKAYLQTQGTCKCGLECPLQCDSVFSFDAK 77
          P    L S  ++  YL   G     LEC       F F+A 
Sbjct: 35 PCGKKLRSKSELARYLHKNGDLSLDLEC-------FDFNAT 68

Methyl-CpG binding domain, also known as the TAM (TTF-IIP5, ARBP, MeCP1) domain. Length = 77

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	98
smart00391	77	MBD Methyl-CpG binding domain. Methyl-CpG binding	99.5
cd01397	73	HAT_MBD Methyl-CpG binding domains (MBD) present i	98.73
PF01429	77	MBD: Methyl-CpG binding domain; InterPro: IPR00173	98.61
cd00122	62	MBD MeCP2, MBD1, MBD2, MBD3, MBD4, CLLD8-like, and	98.59
cd01396	77	MeCP2_MBD MeCP2, MBD1, MBD2, MBD3, and MBD4 are me	98.22
cd01395	60	HMT_MBD Methyl-CpG binding domains (MBD) present i	97.89
KOG4161|consensus	272		92.98

>smart00391 MBD Methyl-CpG binding domain

Probab=99.50  E-value=2.5e-14  Score=94.38  Aligned_cols=56  Identities=23%  Similarity=0.398  Sum_probs=50.8

Q ss_pred             ecccceeeec---------cce-eEeCCCccccccHHHHHHHHhhCceeccCCCccccccceeecCCCCCccc
Q psy8172          20 TTTDYTSEVG---------FWK-QTTRPSNTALSSMEQVKAYLQTQGTCKCGLECPLQCDSVFSFDAKPRERA   82 (98)
Q Consensus        20 vp~gw~r~v~---------k~~-~YiSPsgt~L~S~eqv~~YL~t~GTCKCGLeCPl~~~~vFnFdp~v~~~P   82 (98)
                      +|.||+|++-         ++- +|+||+|..|+|..||..||...|.|+++++|       |+|++.++.-+
T Consensus         8 lp~GW~R~~~~r~~g~~~~~~dV~Y~sP~GkklRs~~ev~~YL~~~~~~~~~~~~-------F~F~~~~~~~~   73 (77)
T smart00391        8 LPCGWRRETKQRKSGRSAGKFDVYYISPCGKKLRSKSELARYLHKNGDLSLDLEC-------FDFNATVPVGP   73 (77)
T ss_pred             CCCCcEEEEEEecCCCCCCcccEEEECCCCCeeeCHHHHHHHHHhCCCccccccc-------ccCcCCccccc
Confidence            6899999986         333 89999999999999999999999999999998       99999998754

Methyl-CpG binding domain, also known as the TAM (TTF-IIP5, ARBP, MeCP1) domain

>cd01397 HAT_MBD Methyl-CpG binding domains (MBD) present in putative chromatin remodelling factor such as BAZ2A; BAZ2A contains a MBD, DDT, PHD-type zinc finger and Bromo domain suggesting that BAZ2A might be associated with histone acetyltransferase (HAT) activity

Probab=98.73  E-value=1.5e-08  Score=67.86  Aligned_cols=54  Identities=24%  Similarity=0.330  Sum_probs=42.8

Q ss_pred             ecccceeee------ccce---eEeCCCccccccHHHHHHHHhhCceeccCCCccccccceeecCCCCCc
Q psy8172          20 TTTDYTSEV------GFWK---QTTRPSNTALSSMEQVKAYLQTQGTCKCGLECPLQCDSVFSFDAKPRE   80 (98)
Q Consensus        20 vp~gw~r~v------~k~~---~YiSPsgt~L~S~eqv~~YL~t~GTCKCGLeCPl~~~~vFnFdp~v~~   80 (98)
                      .++||+|++      .+.+   +|.||+|..|+|..||..||...+      .|-|..| -|.|+++++.
T Consensus         6 l~~GW~Re~vir~~~~~~~~dV~Y~aPcGKklRs~~ev~~yL~~~~------~~~Lt~d-nFsF~~~~~v   68 (73)
T cd01397           6 LELGWRRETRIRGLGGRIQGEVAYYAPCGKKLRQYPEVIKYLSKNG------ISLLSRE-NFSFSARAPV   68 (73)
T ss_pred             CCCCceeEEEeccCCCCccceEEEECCCCcccccHHHHHHHHHhCC------ccCccHh-HccccCCccc
Confidence            469999998      2333   899999999999999999999876      2344444 5899988765

The Drosophila melanogaster toutatis protein, a putative subunit of the chromatin-remodeling complex, and other such proteins in this group share a similar domain architecture with BAZ2A, as does the Caenorhabditis elegans flectin homolog.

>PF01429 MBD: Methyl-CpG binding domain; InterPro: IPR001739 Methylation at CpG dinucleotide, the most common DNA modification in eukaryotes, has been correlated with gene silencing associated with various phenomena such as genomic imprinting, transposon and chromosome X inactivation, differentiation, and cancer

Probab=98.61  E-value=6e-08  Score=63.00  Aligned_cols=54  Identities=20%  Similarity=0.149  Sum_probs=38.7

Q ss_pred             ecccceeeec--c-----ce---eEeCCCccccccHHHHHHHHhhCceeccCCCccccccceeecCCCCC
Q psy8172          20 TTTDYTSEVG--F-----WK---QTTRPSNTALSSMEQVKAYLQTQGTCKCGLECPLQCDSVFSFDAKPR   79 (98)
Q Consensus        20 vp~gw~r~v~--k-----~~---~YiSPsgt~L~S~eqv~~YL~t~GTCKCGLeCPl~~~~vFnFdp~v~   79 (98)
                      +|.||+|++-  +     ++   +|+||+|..++|+.||..||...+-      +...--.-|.|++...
T Consensus        11 Lp~GW~re~~~R~~g~~~~~~dv~Y~sP~Gk~~RS~~eV~~yL~~~~~------~~~l~~~~F~F~~~~~   74 (77)
T PF01429_consen   11 LPDGWKREVVVRKSGSSAGKKDVYYYSPCGKRFRSKKEVVRYLKENPS------EHDLKPENFSFSKRLI   74 (77)
T ss_dssp             STTT-EEEEEESSSSTTTTSEEEEEEETTSEEESSHHHHHHHHTTSS---------SS-CTTBBTTTTB-
T ss_pred             CCCCCEEEEEEecCCCcCCceEEEEECCCCCEEeCHHHHHHHHHhCCC------cccCCHhHCCCCCCcc
Confidence            6899999876  1     23   9999999999999999999999876      2222334577777654

Effects of DNA methylation are mediated through proteins which bind to symmetrically methylated CpGs. Such proteins contain a specific domain of ~70 residues, the methyl-CpG-binding domain (MBD), which is linked to additional domains associated with chromatin, such as the bromodomain, the AT hook motif,the SET domain, or the PHD finger. MBD-containing proteins appear to act as structural proteins, which recruit a variety of histone deacetylase (HDAC) complexes and chromatin remodelling factors, leading to chromatin compaction and, consequently, to transcriptional repression. The MBD of MeCP2, MBD1, MBD2, MBD4 and BAZ2 mediates binding to DNA, in case of MeCP2, MBD1 and MBD2 preferentially to methylated CpG. In case of human MBD3 and SETDB1 the MBD has been shown to mediate protein-protein interactions [, ]. The MBD folds into an alpha/beta sandwich structure comprising a layer of twisted beta sheet, backed by another layer formed by the alpha1 helix and a hairpin loop at the C terminus. These layers are both amphipathic, with the alpha1 helix and the beta sheet lying parallel and the hydrophobic faces tightly packed against each other. The beta sheet is composed of two long inner strands (beta2 and beta3) sandwiched by two shorter outer strands (beta1 and beta4) [].; GO: 0003677 DNA binding, 0005634 nucleus; PDB: 2KY8_A 1UB1_A 1D9N_A 1IG4_A 1QK9_A 3C2I_A.

>cd00122 MBD MeCP2, MBD1, MBD2, MBD3, MBD4, CLLD8-like, and BAZ2A-like proteins constitute a family of proteins that share the methyl-CpG-binding domain (MBD)

Probab=98.59  E-value=7.3e-08  Score=60.42  Aligned_cols=36  Identities=25%  Similarity=0.345  Sum_probs=32.1

Q ss_pred             cccceeeecc------ce---eEeCCCccccccHHHHHHHHhhCc
Q psy8172          21 TTDYTSEVGF------WK---QTTRPSNTALSSMEQVKAYLQTQG   56 (98)
Q Consensus        21 p~gw~r~v~k------~~---~YiSPsgt~L~S~eqv~~YL~t~G   56 (98)
                      |.||+|++-.      ++   +|+||.|..|+|+.||..||...|
T Consensus         7 p~GW~R~~~~r~~g~~~k~dv~Y~sP~Gk~~Rs~~ev~~yL~~~~   51 (62)
T cd00122           7 PPGWKRELVIRKSGSAGKGDVYYYSPCGKKLRSKPEVARYLEKTG   51 (62)
T ss_pred             CCCeEEEEEEcCCCCCCcceEEEECCCCceecCHHHHHHHHHhCC
Confidence            8999998742      33   899999999999999999999988

The MBD consists of about 70 residues and is defined as the minimal region required for binding to methylated DNA by a methyl-CpG-binding protein which binds specifically to methylated DNA. The MBD can recognize a single symmetrically methylated CpG either as naked DNA or within chromatin. MeCP2, MBD1 and MBD2 (and likely MBD3) form complexes with histone deacetylase and are involved in histone deacetylase-dependent repression of transcription. MBD4 is an endonuclease that forms a complex with the DNA mismatch-repair protein MLH1. The MBDs present in putative chromatin remodelling subunit, BAZ2A, and putative histone methyltransferase, CLLD8, represent two phylogenetically distinct groups within the MBD protein family.

>cd01396 MeCP2_MBD MeCP2, MBD1, MBD2, MBD3, and MBD4 are members of a protein family that share the methyl-CpG-binding domain (MBD)

Probab=98.22  E-value=1.8e-06  Score=57.19  Aligned_cols=51  Identities=22%  Similarity=0.299  Sum_probs=39.1

Q ss_pred             ecccceeeecc------ce---eEeCCCccccccHHHHHHHHhhCceeccCCCccccccceeecCCC
Q psy8172          20 TTTDYTSEVGF------WK---QTTRPSNTALSSMEQVKAYLQTQGTCKCGLECPLQCDSVFSFDAK   77 (98)
Q Consensus        20 vp~gw~r~v~k------~~---~YiSPsgt~L~S~eqv~~YL~t~GTCKCGLeCPl~~~~vFnFdp~   77 (98)
                      .|+||+|++-.      ++   +|+||.|..++|.-||..||...+      ++-+.+ .-|+|.+.
T Consensus         7 lp~GW~r~~~~R~~gs~~k~DvyY~sP~Gkk~RS~~ev~~yL~~~~------~~~~~~-~~FdF~~~   66 (77)
T cd01396           7 LPPGWKRELVPRKSGSAGKFDVYYISPTGKKFRSKVELARYLEKNG------PTSLDL-SDFDFTVP   66 (77)
T ss_pred             CCCCCEEEEEEecCCCCCcceEEEECCCCCEEECHHHHHHHHHhCC------CCCCcH-hHcccCCC
Confidence            79999998721      22   899999999999999999999987      223333 35777764

The MBD, consists of about 70 residues and is defined as the minimal region required for binding to methylated DNA by a methyl-CpG-binding protein which binds specifically to methylated DNA. The MBD can recognize a single symmetrically methylated CpG either as naked DNA or within chromatin. MeCP2, MBD1 and MBD2 (and likely MBD3) form complexes with histone deacetylase and are involved in histone deacetylase-dependent repression of transcription. MBD4 is an endonuclease that forms a complex with the DNA mismatch-repair protein MLH1.

>cd01395 HMT_MBD Methyl-CpG binding domains (MBD) present in putative histone methyltransferases (HMT) such as CLLD8 and SETDB1 proteins; CLLD8 contains a MBD, a PreSET and a bifurcated SET domain, suggesting that CLLD8 might be associated with methylation-mediated transcriptional repression

Probab=97.89  E-value=1.1e-05  Score=52.20  Aligned_cols=34  Identities=18%  Similarity=0.246  Sum_probs=30.6

Q ss_pred             ccceeeeccce--------eEeCCCccccccHHHHHHHHhhC
Q psy8172          22 TDYTSEVGFWK--------QTTRPSNTALSSMEQVKAYLQTQ   55 (98)
Q Consensus        22 ~gw~r~v~k~~--------~YiSPsgt~L~S~eqv~~YL~t~   55 (98)
                      .||+|+..+.+        +|.+|.|..|+++.||..||...
T Consensus         8 ~gw~R~~~~~~~~~~k~~V~Y~aPCGr~Lr~~~EV~~YL~~t   49 (60)
T cd01395           8 CGFQRMKYRARVGKVKKHVIYKAPCGRSLRNMSEVHRYLRET   49 (60)
T ss_pred             cCeEEEEEeccCCCcccceEEECCcchhhhcHHHHHHHHHhc
Confidence            59999986655        89999999999999999999876

SETDB1 and other proteins in this group have a similar domain architecture. SETDB1 is a novel KAP-1-associated histone H3, lysine 9-specific methyltransferase that contributes to HP1-mediated silencing of euchromatic genes by KRAB zinc-finger proteins.

>KOG4161|consensus

Probab=92.98  E-value=0.061  Score=42.69  Aligned_cols=39  Identities=26%  Similarity=0.288  Sum_probs=33.0

Q ss_pred             Eecccceeee---------ccce-eEeCCCccccccHHHHHHHHhhCce
Q psy8172          19 LTTTDYTSEV---------GFWK-QTTRPSNTALSSMEQVKAYLQTQGT   57 (98)
Q Consensus        19 ~vp~gw~r~v---------~k~~-~YiSPsgt~L~S~eqv~~YL~t~GT   57 (98)
                      .+|-||+|.+         +++- +|+||+|..++|--+.+.||-..|+
T Consensus        18 ~lp~GW~~~~~~r~~~~~~g~~dv~~~sp~g~~frsk~~l~~~~~~~~~   66 (272)
T KOG4161|consen   18 ALPPGWTREEVQRSSGLSAGKSDVYYISPSGKKFRSKPQLARYLGKVGD   66 (272)
T ss_pred             CCCCCcchhhhcccCCCcccccceEEeCCcccccccccHHHHHhccccc
Confidence            5799999874         3444 9999999999999999999987765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	98
1d9n_A	75	Methyl-CPG-binding protein MBD1; PCM1, methylation	98.53
2ky8_A	72	Methyl-CPG-binding domain protein 2; DNA binding d	98.44
3vxv_A	69	Methyl-CPG-binding domain protein 4; methyl CPG bi	98.36
3c2i_A	97	Methyl-CPG-binding protein 2; water mediated recog	98.13
1ub1_A	133	MECP2, attachment region binding protein; chicken	97.86

>1d9n_A Methyl-CPG-binding protein MBD1; PCM1, methylation, DNA binding domain, gene regulation; NMR {Homo sapiens} SCOP: d.10.1.3 PDB: 1ig4_A*

Probab=98.53  E-value=7.9e-08  Score=63.08  Aligned_cols=52  Identities=13%  Similarity=0.188  Sum_probs=40.0

Q ss_pred             ecccceeeecc-------ce---eEeCCCccccccHHHHHHHHhhCceeccCCCccccccceeecCCCCCccc
Q psy8172          20 TTTDYTSEVGF-------WK---QTTRPSNTALSSMEQVKAYLQTQGTCKCGLECPLQCDSVFSFDAKPRERA   82 (98)
Q Consensus        20 vp~gw~r~v~k-------~~---~YiSPsgt~L~S~eqv~~YL~t~GTCKCGLeCPl~~~~vFnFdp~v~~~P   82 (98)
                      .|.||+|++-.       ++   +|+||+|..++|..||..||..          -+.+ ..|+|.......|
T Consensus        11 LP~GW~Re~~~R~~g~s~gk~DvyY~sP~Gkk~RS~~ev~ryL~~----------~~~~-~~FdF~~gk~~~~   72 (75)
T 1d9n_A           11 LGPGWKRREVFRKSGATCGRSDTYYQSPTGDRIRSKVELTRYLGP----------ACDL-TLFDFKQGILCYP   72 (75)
T ss_dssp             TCSSCEEEECSSSSSCTTCCCCEEEECSSSCEECSTHHHHHHHCT----------TCCC-TTCCTTTCCCCCS
T ss_pred             CCCCCEEEEEEecCCCCCCceEEEEECCCCCeeecHHHHHHHhcc----------CCCc-cccCCCCCCccCC
Confidence            48999998742       23   8999999999999999999953          1233 3489988877654

>2ky8_A Methyl-CPG-binding domain protein 2; DNA binding domain, transcription-DNA complex; HET: DNA 5CM TED; NMR {Gallus gallus}

Probab=98.44  E-value=1.7e-07  Score=60.83  Aligned_cols=49  Identities=22%  Similarity=0.255  Sum_probs=37.4

Q ss_pred             ecccceeeecc-------ce---eEeCCCccccccHHHHHHHHhhCceeccCCCccccccceeecCCCCC
Q psy8172          20 TTTDYTSEVGF-------WK---QTTRPSNTALSSMEQVKAYLQTQGTCKCGLECPLQCDSVFSFDAKPR   79 (98)
Q Consensus        20 vp~gw~r~v~k-------~~---~YiSPsgt~L~S~eqv~~YL~t~GTCKCGLeCPl~~~~vFnFdp~v~   79 (98)
                      .|.||+|++-.       ++   +|+||+|..++|..||..||..+          +.+ .-|+|....+
T Consensus        13 Lp~GW~R~~~~R~~g~s~~k~DvyY~sP~Gkr~RS~~ev~~YL~~~----------l~~-~~FdF~~~~~   71 (72)
T 2ky8_A           13 LPPGWKKEEVIRKSGLSAGKSDVYYFSPSGKKFRSKPQLARYLGNA----------VDL-SCFDFRTGKM   71 (72)
T ss_dssp             SCTTCEEEEEECCSSTTTTCEEEEEECTTCCEEESHHHHHHHHTTS----------SCC-TTCBTTTTBC
T ss_pred             CCCCCEEEEEEecCCCCCCceEEEEECCCCCEeEcHHHHHHHHhcC----------CCh-hhcCCCCCCc
Confidence            48899998741       22   89999999999999999999772          333 3478876543

>3vxv_A Methyl-CPG-binding domain protein 4; methyl CPG binding domain, protein-DNA complex, versatIle BA recognition, hydrolase-DNA complex; HET: DNA 5CM; 2.00A {Mus musculus} PDB: 3vxx_A* 3vyb_A* 3vyq_A*

Probab=98.36  E-value=2.3e-07  Score=59.87  Aligned_cols=39  Identities=18%  Similarity=0.224  Sum_probs=33.9

Q ss_pred             ecccceeeeccc-------e---eEeCCCccccccHHHHHHHHhhCcee
Q psy8172          20 TTTDYTSEVGFW-------K---QTTRPSNTALSSMEQVKAYLQTQGTC   58 (98)
Q Consensus        20 vp~gw~r~v~k~-------~---~YiSPsgt~L~S~eqv~~YL~t~GTC   58 (98)
                      +|.||+|++-.+       +   +|+||+|..++|..||..||...|.+
T Consensus         6 lp~GW~R~~~~R~~G~s~gk~DvyY~sP~Gkk~RSk~ev~~yL~~~~~~   54 (69)
T 3vxv_A            6 VPCGWERVVKQRLSGKTAGKFDVYFISPQGLKFRSKRSLANYLLKNGET   54 (69)
T ss_dssp             SCTTCEEEEEECCSSTTTTCEEEEEECTTSCEECSHHHHHHHHHHHCCC
T ss_pred             CCCCCEEEEEEeccCCCCCcceEEEEcCCCCEeeCHHHHHHHHHhCCCC
Confidence            589999987442       3   99999999999999999999998865

>3c2i_A Methyl-CPG-binding protein 2; water mediated recognition; HET: DNA 5CM; 2.50A {Homo sapiens} PDB: 1qk9_A

Probab=98.13  E-value=1.3e-06  Score=60.09  Aligned_cols=38  Identities=18%  Similarity=0.258  Sum_probs=32.7

Q ss_pred             ecccceeeecc-------ce---eEeCCCccccccHHHHHHHHhhCce
Q psy8172          20 TTTDYTSEVGF-------WK---QTTRPSNTALSSMEQVKAYLQTQGT   57 (98)
Q Consensus        20 vp~gw~r~v~k-------~~---~YiSPsgt~L~S~eqv~~YL~t~GT   57 (98)
                      +|.||+|++-.       ++   +|+||+|..++|.-||..||...|-
T Consensus        24 lP~GW~re~~~R~~G~s~gk~DvYY~sP~GkkfRSk~ev~ryL~~~g~   71 (97)
T 3c2i_A           24 LPEGWTRKLKQRKSGRSAGKYDVYLINPQGKAFRSKVELIMYFEKVGD   71 (97)
T ss_dssp             SCTTCEEEEEECCSSTTTTCEEEEEECTTSCEECSHHHHHHHHHHHTC
T ss_pred             CCCCCEEEEEEecCCCCCCcceEEEECCCCCEEECHHHHHHHHHHCCC
Confidence            68999998752       23   8999999999999999999998764

>1ub1_A MECP2, attachment region binding protein; chicken methyl-CPG-binding protein 2 (cmecp2), MAR-binding protein (ARBP), spectroscopy; NMR {Gallus gallus} SCOP: d.10.1.3

Probab=97.86  E-value=1.2e-05  Score=58.16  Aligned_cols=38  Identities=21%  Similarity=0.285  Sum_probs=32.6

Q ss_pred             ecccceeeecc-------ce---eEeCCCccccccHHHHHHHHhhCce
Q psy8172          20 TTTDYTSEVGF-------WK---QTTRPSNTALSSMEQVKAYLQTQGT   57 (98)
Q Consensus        20 vp~gw~r~v~k-------~~---~YiSPsgt~L~S~eqv~~YL~t~GT   57 (98)
                      +|.||+|++-.       ++   ||+||+|..++|.-||..||...|-
T Consensus        38 LP~GWkRe~~~RksG~Sagk~DVYY~SP~GKkfRSk~Ev~ryL~~~~~   85 (133)
T 1ub1_A           38 LPEGWTRKLKQRKSGRSAGKYDVYLINPQGKAFRSKVELIAYFEKVGD   85 (133)
T ss_dssp             BTTBCEEEEEECCCSSSCCSEEEEEECTTSCEESSHHHHHHHHTTSCC
T ss_pred             CCCCCEEEEEEecCCCCCCceeEEEECCCCCeeeCHHHHHHHHHHCCc
Confidence            78999998742       22   8999999999999999999998764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	98
d1ig4a_	75	Methylation-dependent transcriptional repressor MB	98.55
d1qk9a_	92	Methyl-CpG-binding protein 2, MECP2 {Human (Homo s	98.34

>d1ig4a_ d.10.1.3 (A:) Methylation-dependent transcriptional repressor MBD1/PCM1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: Methyl-CpG-binding domain, MBD
domain: Methylation-dependent transcriptional repressor MBD1/PCM1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=4.3e-08  Score=62.99  Aligned_cols=52  Identities=13%  Similarity=0.176  Sum_probs=39.2

Q ss_pred             ecccceeeecc-------ce---eEeCCCccccccHHHHHHHHhhCceeccCCCccccccceeecCCCCCccc
Q psy8172          20 TTTDYTSEVGF-------WK---QTTRPSNTALSSMEQVKAYLQTQGTCKCGLECPLQCDSVFSFDAKPRERA   82 (98)
Q Consensus        20 vp~gw~r~v~k-------~~---~YiSPsgt~L~S~eqv~~YL~t~GTCKCGLeCPl~~~~vFnFdp~v~~~P   82 (98)
                      .|.||+|++-.       ++   +|+||+|..++|+.||..||.+.          +.++ -|+|.......|
T Consensus        11 LP~GW~re~~~Rk~g~~~gk~DvyY~sP~Gkk~RS~~ev~~yL~~~----------l~~~-~FdF~tg~~~~p   72 (75)
T d1ig4a_          11 LGPGWKRREVFRKSGATCGRSDTYYQSPTGDRIRSKVELTRYLGPA----------CDLT-LFDFKQGILCYP   72 (75)
T ss_dssp             TCTTCEEEEECCCSSSSTTCCEEEEECSSSCEECSHHHHHHHHCSS----------SCCT-TBCTTTCCBSCC
T ss_pred             CCCCcEEEEEEEcCCCCCCceeEEEECCCCCEEeCHHHHHHHhccC----------CCcc-ceeccCCcEeCC
Confidence            47899998522       23   89999999999999999999542          3333 488887776654

>d1qk9a_ d.10.1.3 (A:) Methyl-CpG-binding protein 2, MECP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: Methyl-CpG-binding domain, MBD
domain: Methyl-CpG-binding protein 2, MECP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=1.6e-07  Score=61.90  Aligned_cols=38  Identities=21%  Similarity=0.285  Sum_probs=32.0

Q ss_pred             ecccceeeecc-------ce---eEeCCCccccccHHHHHHHHhhCce
Q psy8172          20 TTTDYTSEVGF-------WK---QTTRPSNTALSSMEQVKAYLQTQGT   57 (98)
Q Consensus        20 vp~gw~r~v~k-------~~---~YiSPsgt~L~S~eqv~~YL~t~GT   57 (98)
                      .|+||+|++-.       ++   +|+||+|..|+|+.||..||...|-
T Consensus        24 Lp~GW~r~~~~R~~g~~~gk~Dvyy~sP~Gkk~RS~~eV~~yL~~~~~   71 (92)
T d1qk9a_          24 LPEGWTRKLKQRKSGRSAGKYDVYLINPQGKAFRSKVELIAYFEKVGD   71 (92)
T ss_dssp             SSSSCEEEECCCCCSSSCSCCCEEEEETTTEEESSHHHHHHHHHHHTC
T ss_pred             CCCCCEEEEEEecCCCCCceeeEEEECCCCCeeecHHHHHHHHHHCCC
Confidence            68999997431       22   9999999999999999999998663