Psyllid ID: psy8199
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 965 | 2.2.26 [Sep-21-2011] | |||||||
| A4G1F1 | 339 | Biotin synthase OS=Hermin | no | N/A | 0.339 | 0.967 | 0.643 | 1e-134 | |
| A6SU66 | 339 | Biotin synthase OS=Janthi | no | N/A | 0.339 | 0.967 | 0.643 | 1e-132 | |
| Q12D73 | 343 | Biotin synthase 2 OS=Pola | yes | N/A | 0.320 | 0.900 | 0.624 | 1e-124 | |
| B2JKH4 | 351 | Biotin synthase OS=Burkho | no | N/A | 0.312 | 0.860 | 0.655 | 1e-123 | |
| Q21W43 | 349 | Biotin synthase OS=Rhodof | yes | N/A | 0.303 | 0.839 | 0.651 | 1e-122 | |
| A1VUJ4 | 345 | Biotin synthase OS=Polaro | yes | N/A | 0.315 | 0.881 | 0.621 | 1e-121 | |
| Q146K5 | 360 | Biotin synthase OS=Burkho | no | N/A | 0.310 | 0.833 | 0.636 | 1e-121 | |
| B2SWS5 | 361 | Biotin synthase OS=Burkho | no | N/A | 0.310 | 0.831 | 0.636 | 1e-120 | |
| Q2T1Q4 | 336 | Biotin synthase OS=Burkho | no | N/A | 0.311 | 0.895 | 0.644 | 1e-120 | |
| A3N520 | 336 | Biotin synthase OS=Burkho | no | N/A | 0.312 | 0.898 | 0.642 | 1e-120 |
| >sp|A4G1F1|BIOB_HERAR Biotin synthase OS=Herminiimonas arsenicoxydans GN=bioB PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 478 bits (1231), Expect = e-134, Method: Compositional matrix adjust.
Identities = 211/328 (64%), Positives = 269/328 (82%)
Query: 635 QHMTSAIFQTFNELDEVINLFNLPFNDLLFRAQKVHRKYFDANEIELAVLLSIKTGGCTE 694
Q + I T +D+V+ LFNLPFN+L+FRAQ VHR++FD +E+ELA LLSIKTGGC E
Sbjct: 9 QAPVAPIVPTAWPVDDVLALFNLPFNELMFRAQTVHREHFDPSEVELATLLSIKTGGCPE 68
Query: 695 DCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIEN 754
DCGYCPQ+ Y+T +TA KIL +E V+TAA++AK+ GATRFCMGAAWRE KDRDL+ +E
Sbjct: 69 DCGYCPQAARYDTGVTAQKILPLEEVLTAAREAKAHGATRFCMGAAWREPKDRDLEKVEE 128
Query: 755 MICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLN 814
M+ EVK +G+ETC TLGML E QA +LK GLDYYNHNLDT+P+ Y ++ISTRDY+NR++
Sbjct: 129 MVREVKAMGMETCATLGMLGEGQAEKLKNAGLDYYNHNLDTAPEFYSNVISTRDYQNRID 188
Query: 815 TLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGS 874
TL VRNVGI +CCGGI+G+ ESR QRA LI QL N++PYPESVP+NNLVQ++GTPL+G+
Sbjct: 189 TLARVRNVGIKVCCGGIVGMGESRLQRAGLIAQLCNMDPYPESVPVNNLVQVEGTPLHGT 248
Query: 875 SILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDN 934
+DPLEF+RT+AVARITMP +R+R+SAGR+EMGE QA CF+AGANSIFYGDKLLTT N
Sbjct: 249 DPIDPLEFVRTVAVARITMPKARVRLSAGRREMGEAIQALCFVAGANSIFYGDKLLTTGN 308
Query: 935 TKTNDDSKLLKKLGINTRNIKIKMKNNI 962
+ D +LL+KLG++TR+ I + ++
Sbjct: 309 PEALADQELLEKLGMHTRSTAIDARCDV 336
|
Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism. Herminiimonas arsenicoxydans (taxid: 204773) EC: 2EC: .EC: 8EC: .EC: 1EC: .EC: 6 |
| >sp|A6SU66|BIOB_JANMA Biotin synthase OS=Janthinobacterium sp. (strain Marseille) GN=bioB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 474 bits (1221), Expect = e-132, Method: Compositional matrix adjust.
Identities = 211/328 (64%), Positives = 265/328 (80%)
Query: 635 QHMTSAIFQTFNELDEVINLFNLPFNDLLFRAQKVHRKYFDANEIELAVLLSIKTGGCTE 694
Q + I T +D+V+ LFNLPFNDL+FRAQ VHR+ FD E+ELA LLSIKTGGC E
Sbjct: 9 QAPVAPIIPTAWPVDDVLALFNLPFNDLIFRAQTVHRENFDPTEVELATLLSIKTGGCPE 68
Query: 695 DCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIEN 754
DCGYCPQ+ Y+T +TA KIL +E V+TAA++AK+ GATRFCMGAAWRE KDRDL+ +E
Sbjct: 69 DCGYCPQAARYDTGVTAQKILPLEEVLTAAREAKAHGATRFCMGAAWREPKDRDLEKVEE 128
Query: 755 MICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLN 814
M+ EVK +GLETC TLGML E QA +LK GLDYYNHNLDT+P+ Y ++ISTRDY+NR++
Sbjct: 129 MVREVKAMGLETCATLGMLGEGQAEKLKNAGLDYYNHNLDTAPEFYSNVISTRDYQNRID 188
Query: 815 TLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGS 874
TL VR GI +CCGGI+G+ ESR QRA LI QL N++PYPESVP+NNLVQ++GTPL+G+
Sbjct: 189 TLGRVRGAGIKVCCGGIVGMGESRLQRAGLIAQLCNMDPYPESVPVNNLVQVEGTPLHGT 248
Query: 875 SILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDN 934
+DPLEF+RT+AVARITMP +R+R+SAGR+EMGE QA CF+AGANSIFYGDKLLTT N
Sbjct: 249 DPIDPLEFVRTVAVARITMPKARVRLSAGRREMGEAIQALCFVAGANSIFYGDKLLTTGN 308
Query: 935 TKTNDDSKLLKKLGINTRNIKIKMKNNI 962
+ D +LL+KLG++TR+ I + ++
Sbjct: 309 PEAMADQELLEKLGMHTRSTAIDARCDV 336
|
Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism. Janthinobacterium sp. (strain Marseille) (taxid: 375286) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 6 |
| >sp|Q12D73|BIOB2_POLSJ Biotin synthase 2 OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=bioB2 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 446 bits (1146), Expect = e-124, Method: Compositional matrix adjust.
Identities = 193/309 (62%), Positives = 249/309 (80%)
Query: 647 ELDEVINLFNLPFNDLLFRAQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHYN 706
+++++ L+ LPF DLLFRAQ+VHR++FDANE++L+ LLSIKTGGC EDCGYCPQSTH+
Sbjct: 28 QVEDIAALYELPFMDLLFRAQQVHREHFDANEVQLSTLLSIKTGGCAEDCGYCPQSTHFE 87
Query: 707 TEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLET 766
TE+ A+K++ + VI AA+ AK GATRFCMGAAWR K+RD++ + ++ EV+ +GLET
Sbjct: 88 TEVKASKLMPLAEVIEAARAAKDQGATRFCMGAAWRSPKERDMERVTEIVREVRSLGLET 147
Query: 767 CLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINI 826
C+TLGML QA LK GLDYYNHNLD++P+ YGDIISTR Y++RL+TL +VR GIN+
Sbjct: 148 CMTLGMLQAEQAQALKDAGLDYYNHNLDSAPEFYGDIISTRTYQDRLDTLGHVRQAGINV 207
Query: 827 CCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTI 886
CCGGI+G+ ESR QRA LI QLANL+PYPESVPINNLV + GTPL ++ LDP EF+RTI
Sbjct: 208 CCGGIVGMGESRLQRAGLIAQLANLSPYPESVPINNLVPVAGTPLANTAPLDPFEFVRTI 267
Query: 887 AVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLLKK 946
AVARITMP + +R+SAGR++M E QA CF AGANSIFYGDKLLTT N + + D +L ++
Sbjct: 268 AVARITMPLTMVRLSAGREQMDEALQALCFAAGANSIFYGDKLLTTSNPQADRDRQLFER 327
Query: 947 LGINTRNIK 955
LG+ T+ +
Sbjct: 328 LGLKTQGAR 336
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Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism. Polaromonas sp. (strain JS666 / ATCC BAA-500) (taxid: 296591) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 6 |
| >sp|B2JKH4|BIOB_BURP8 Biotin synthase OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=bioB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 442 bits (1138), Expect = e-123, Method: Compositional matrix adjust.
Identities = 198/302 (65%), Positives = 245/302 (81%)
Query: 650 EVINLFNLPFNDLLFRAQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHYNTEI 709
+V L+ LPFNDLLFRAQ+VHR++FDAN ++L+ LLSIKTGGC EDC YCPQS H+ T +
Sbjct: 31 DVAALYELPFNDLLFRAQQVHREHFDANTVQLSTLLSIKTGGCEEDCAYCPQSVHHETGL 90
Query: 710 TATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLT 769
A K++ +E V+ AA+ AK +GATRFCMGAAWR KDR L+ I++MI VK +GLETC+T
Sbjct: 91 KAEKLMEVEEVLAAARVAKENGATRFCMGAAWRNPKDRHLEPIKDMIRGVKSMGLETCVT 150
Query: 770 LGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCG 829
LGML +QA L++ GLDYYNHNLDTSP+ YG IISTR Y++RL+TL++VR+ GIN+CCG
Sbjct: 151 LGMLEAHQAQALREAGLDYYNHNLDTSPEFYGQIISTRTYQDRLDTLEHVRDAGINVCCG 210
Query: 830 GIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVA 889
GI+GL ESR +RA LI QLAN+ PYPESVPINNLVQ++GTPL G+ LDP EF+RTIAVA
Sbjct: 211 GIVGLGESRRERAGLIAQLANMEPYPESVPINNLVQVEGTPLTGTEALDPFEFVRTIAVA 270
Query: 890 RITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLLKKLGI 949
RITMP + +R+SAGR++M E QA CFLAGANSIFYGD+LLTT N + D KLL +LGI
Sbjct: 271 RITMPRAMVRLSAGREQMDEALQAMCFLAGANSIFYGDQLLTTSNPQAEADRKLLARLGI 330
Query: 950 NT 951
Sbjct: 331 RA 332
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Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism. Burkholderia phymatum (strain DSM 17167 / STM815) (taxid: 391038) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 6 |
| >sp|Q21W43|BIOB_RHOFD Biotin synthase OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=bioB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 439 bits (1128), Expect = e-122, Method: Compositional matrix adjust.
Identities = 191/293 (65%), Positives = 240/293 (81%)
Query: 648 LDEVINLFNLPFNDLLFRAQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHYNT 707
L +V+ LF LPFNDL+F+AQ+ HR +F ++ELA LLSIKTGGC EDC YCPQ+ Y+T
Sbjct: 31 LADVLALFELPFNDLMFQAQQTHRAHFPKGDVELATLLSIKTGGCEEDCSYCPQAARYDT 90
Query: 708 EITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETC 767
+ A KIL +E V+ AA++A++ GATRFCMGAAWR K+RDL+ +E M+ VK++GLETC
Sbjct: 91 GVEAQKILELEQVLDAAREARASGATRFCMGAAWRSPKERDLEKVEAMVRGVKQLGLETC 150
Query: 768 LTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINIC 827
TLGML E QA RLK+ GLDYYNHNLD++P+ Y ++ISTR+Y++RL+TL VR G+ IC
Sbjct: 151 ATLGMLEEGQADRLKQAGLDYYNHNLDSAPEFYSNVISTREYQDRLDTLGRVRQAGLKIC 210
Query: 828 CGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIA 887
CGGI+G+ ESR QRA LI QLANLNPYPESVP+N+LVQ++GTPLYG LDP+EF+RTIA
Sbjct: 211 CGGIVGMGESRQQRAGLIAQLANLNPYPESVPVNHLVQVEGTPLYGIEPLDPIEFVRTIA 270
Query: 888 VARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDD 940
VARITMP +R+R+SAGR++MG+ QA CFLAGANSIFYGDKLLTT N + DD
Sbjct: 271 VARITMPKARVRLSAGRRQMGDAVQAMCFLAGANSIFYGDKLLTTGNPEAGDD 323
|
Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism. Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) (taxid: 338969) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 6 |
| >sp|A1VUJ4|BIOB_POLNA Biotin synthase OS=Polaromonas naphthalenivorans (strain CJ2) GN=bioB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 437 bits (1124), Expect = e-121, Method: Compositional matrix adjust.
Identities = 189/304 (62%), Positives = 242/304 (79%)
Query: 650 EVINLFNLPFNDLLFRAQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHYNTEI 709
++ L+ LPF DLLFRAQ+VHR FDAN+++L+ LLSIKTGGC EDCGYCPQS+H+ TE+
Sbjct: 33 DIEALYALPFMDLLFRAQQVHRANFDANQVQLSTLLSIKTGGCAEDCGYCPQSSHFETEV 92
Query: 710 TATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLT 769
A+K+++++ V+ AAQ AK GATRFCMGAAW K+RD++ + M+ EV+ +GLETC+T
Sbjct: 93 KASKLMALDEVMAAAQAAKDQGATRFCMGAAWSRPKERDMERVTEMVREVRGLGLETCMT 152
Query: 770 LGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCG 829
LGML QA LK GLDYYNHNLD+SP+ YG IISTR Y++RL+TL+NVR GIN+CCG
Sbjct: 153 LGMLEAEQAQALKDAGLDYYNHNLDSSPEFYGSIISTRTYQDRLDTLENVRGAGINVCCG 212
Query: 830 GIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVA 889
GI+G+ ESR QRA L+ QLANL PYPESVPINNLV ++GTPL + LDP EF+RTIAVA
Sbjct: 213 GIVGMGESRAQRAGLVAQLANLEPYPESVPINNLVAVEGTPLADTPPLDPFEFVRTIAVA 272
Query: 890 RITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLLKKLGI 949
RITMP + +R+SAGR++M E QA CF+AGANSIFYGD+LLTT N + + D +L +LG+
Sbjct: 273 RITMPRTMVRLSAGREQMDEALQALCFMAGANSIFYGDRLLTTSNPQADKDRQLFARLGL 332
Query: 950 NTRN 953
+
Sbjct: 333 KVQG 336
|
Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism. Polaromonas naphthalenivorans (strain CJ2) (taxid: 365044) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 6 |
| >sp|Q146K5|BIOB_BURXL Biotin synthase OS=Burkholderia xenovorans (strain LB400) GN=bioB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 436 bits (1120), Expect = e-121, Method: Compositional matrix adjust.
Identities = 191/300 (63%), Positives = 248/300 (82%)
Query: 650 EVINLFNLPFNDLLFRAQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHYNTEI 709
++++L+ LPFNDL+F+AQ+ HR++FDAN ++L+ LLSIKTGGC EDC YCPQS H++T +
Sbjct: 35 DIVSLYELPFNDLMFQAQQTHREHFDANTVQLSTLLSIKTGGCEEDCAYCPQSVHHDTGL 94
Query: 710 TATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLT 769
A K++ ++ V+ AA+ AK +GATRFCMGAAWR KDR L+ I++MI VK +GLETC+T
Sbjct: 95 QADKLMPVDEVLAAAKVAKENGATRFCMGAAWRNPKDRHLEPIKDMIRGVKAMGLETCVT 154
Query: 770 LGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCG 829
LGML +QA L++ GLDYYNHNLDTSP+ YG IISTR Y++RL+TL+ VR+ GIN+CCG
Sbjct: 155 LGMLETHQAQGLREAGLDYYNHNLDTSPEFYGQIISTRTYQDRLDTLERVRDAGINVCCG 214
Query: 830 GIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVA 889
GI+GL ESR +RA LI QLAN++PYPESVPINNLVQ++GTPL G+ +DP EF+RTIA+A
Sbjct: 215 GIVGLGESRRERAGLIAQLANMDPYPESVPINNLVQVEGTPLTGTEAIDPFEFVRTIAIA 274
Query: 890 RITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLLKKLGI 949
RITMP + +R+SAGR++M E QA CFLAGANSIFYGD+LLTT N + D KLL++LGI
Sbjct: 275 RITMPRAMVRLSAGREQMNEALQAMCFLAGANSIFYGDQLLTTSNPQAEADRKLLERLGI 334
|
Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism. Burkholderia xenovorans (strain LB400) (taxid: 266265) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 6 |
| >sp|B2SWS5|BIOB_BURPP Biotin synthase OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=bioB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 435 bits (1118), Expect = e-120, Method: Compositional matrix adjust.
Identities = 191/300 (63%), Positives = 246/300 (82%)
Query: 650 EVINLFNLPFNDLLFRAQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHYNTEI 709
+++ L+ LPFNDL+F+AQ+ HR++FDAN ++L+ LLSIKTGGC EDC YCPQS H++T +
Sbjct: 36 DIVALYELPFNDLMFKAQQTHREHFDANTVQLSTLLSIKTGGCEEDCAYCPQSVHHDTGL 95
Query: 710 TATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLT 769
A K++ ++ V+ AA+ AK +GATRFCMGAAWR KDR L+ I++MI VK +GLETC+T
Sbjct: 96 QADKLMPVDEVLAAAKVAKENGATRFCMGAAWRNPKDRHLEPIKDMIRGVKAMGLETCVT 155
Query: 770 LGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCG 829
LGML +QA L++ GLDYYNHNLDTSP+ YG IISTR Y++RL+TL+ VR+ GIN+CCG
Sbjct: 156 LGMLETHQAQGLREAGLDYYNHNLDTSPEFYGQIISTRTYQDRLDTLERVRDAGINVCCG 215
Query: 830 GIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVA 889
GI+GL ESR +RA LI QLAN+ PYPESVPINNLVQ++GTPL G+ +DP EF+RTIA+A
Sbjct: 216 GIVGLGESRRERAGLIAQLANMEPYPESVPINNLVQVEGTPLTGTEAIDPFEFVRTIAIA 275
Query: 890 RITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLLKKLGI 949
RITMP + +R+SAGR++M E QA CFLAGANSIFYGD+LLTT N + D KLL++LGI
Sbjct: 276 RITMPRAMVRLSAGREQMDEALQALCFLAGANSIFYGDQLLTTSNPQAEADRKLLERLGI 335
|
Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism. Burkholderia phytofirmans (strain DSM 17436 / PsJN) (taxid: 398527) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 6 |
| >sp|Q2T1Q4|BIOB_BURTA Biotin synthase OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=bioB PE=3 SV=2 | Back alignment and function description |
|---|
Score = 432 bits (1111), Expect = e-120, Method: Compositional matrix adjust.
Identities = 194/301 (64%), Positives = 245/301 (81%)
Query: 650 EVINLFNLPFNDLLFRAQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHYNTEI 709
+VI L+ LPFNDLLFRAQ+ HR++FDAN I+L+ LLSIKTGGC EDCGYC QS H++T +
Sbjct: 27 DVIALYELPFNDLLFRAQQTHREHFDANAIQLSTLLSIKTGGCEEDCGYCSQSAHHDTGL 86
Query: 710 TATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLT 769
A K++ +++V+ AA+ AK +GATRFCMGAAWR KDR ++ I+ MI VK +GLETC+T
Sbjct: 87 KAEKLMEVDAVLAAARTAKENGATRFCMGAAWRNPKDRHIEPIKEMIRGVKDMGLETCVT 146
Query: 770 LGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCG 829
LGML E+QA L + GLDYYNHNLDTSP+ YG IISTR Y++RL+TL+ VR+ GIN+CCG
Sbjct: 147 LGMLEEHQAKALAEAGLDYYNHNLDTSPEFYGQIISTRTYQDRLDTLERVRDAGINVCCG 206
Query: 830 GIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVA 889
GIIG+ ESR +RA LI QLAN+NPYPESVPINNLV I+GTPL + LDP EF+RTIAVA
Sbjct: 207 GIIGMGESRRERAGLIAQLANMNPYPESVPINNLVAIEGTPLENAQALDPFEFVRTIAVA 266
Query: 890 RITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLLKKLGI 949
RITMP + +R+SAGR+++ ++ QA CFLAGANS+FYGD LLTT N + D KLL +LG+
Sbjct: 267 RITMPKAMVRLSAGREQLDDSMQALCFLAGANSMFYGDVLLTTGNPRAEADRKLLARLGM 326
Query: 950 N 950
+
Sbjct: 327 S 327
|
Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism. Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) (taxid: 271848) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 6 |
| >sp|A3N520|BIOB_BURP6 Biotin synthase OS=Burkholderia pseudomallei (strain 668) GN=bioB PE=3 SV=2 | Back alignment and function description |
|---|
Score = 432 bits (1110), Expect = e-120, Method: Compositional matrix adjust.
Identities = 194/302 (64%), Positives = 244/302 (80%)
Query: 650 EVINLFNLPFNDLLFRAQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHYNTEI 709
+VI L+ LPFNDLLFRAQ+ HR++FDAN I+L+ LLSIKTGGC EDCGYC QS H++T +
Sbjct: 27 DVIALYELPFNDLLFRAQQTHREHFDANAIQLSTLLSIKTGGCEEDCGYCSQSAHHDTGL 86
Query: 710 TATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLT 769
A K++ +++V+ AA+ AK +GATRFCMGAAWR KDR ++ I+ MI VK +GLETC+T
Sbjct: 87 KAEKLMEVDAVLAAARTAKENGATRFCMGAAWRNPKDRHIEPIKEMIRGVKDMGLETCVT 146
Query: 770 LGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCG 829
LGML E+QA L + GLDYYNHNLDTSP+ YG IISTR Y++RL+TL+ VR+ GIN+CCG
Sbjct: 147 LGMLEEHQAKALAEAGLDYYNHNLDTSPEFYGQIISTRTYQDRLDTLERVRDAGINVCCG 206
Query: 830 GIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVA 889
GIIG+ ESR +RA LI QLAN+NPYPESVPINNLV I+GTPL + LDP EF+RTIAVA
Sbjct: 207 GIIGMGESRRERAGLIAQLANMNPYPESVPINNLVAIEGTPLENAQALDPFEFVRTIAVA 266
Query: 890 RITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLLKKLGI 949
RITMP + +R+SAGR+++ + QA CFLAGANS+FYGD LLTT N + D KLL +LG+
Sbjct: 267 RITMPKAMVRLSAGREQLDDAMQALCFLAGANSMFYGDVLLTTGNPRAEADRKLLARLGM 326
Query: 950 NT 951
+
Sbjct: 327 SA 328
|
Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism. Burkholderia pseudomallei (strain 668) (taxid: 320373) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 6 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 965 | ||||||
| 152980665 | 450 | adenosylmethionine-8-amino-7-oxononanoat | 0.413 | 0.886 | 0.583 | 1e-148 | |
| 134093390 | 448 | adenosylmethionine-8-amino-7-oxononanoat | 0.412 | 0.888 | 0.597 | 1e-146 | |
| 427400063 | 446 | adenosylmethionine-8-amino-7-oxononanoat | 0.415 | 0.899 | 0.573 | 1e-145 | |
| 445493864 | 448 | adenosylmethionine-8-amino-7-oxononanoat | 0.411 | 0.886 | 0.590 | 1e-142 | |
| 237749138 | 447 | adenosylmethionine-8-amino-7-oxononanoat | 0.409 | 0.883 | 0.595 | 1e-142 | |
| 385207184 | 453 | adenosylmethionine-8-amino-7-oxononanoat | 0.409 | 0.871 | 0.567 | 1e-141 | |
| 209518227 | 453 | adenosylmethionine-8-amino-7-oxononanoat | 0.409 | 0.871 | 0.556 | 1e-140 | |
| 91781583 | 452 | adenosylmethionine-8-amino-7-oxononanoat | 0.409 | 0.873 | 0.562 | 1e-140 | |
| 340789433 | 465 | adenosylmethionine-8-amino-7-oxononanoat | 0.406 | 0.843 | 0.576 | 1e-139 | |
| 237746985 | 444 | aminotransferase [Oxalobacter formigenes | 0.409 | 0.889 | 0.580 | 1e-139 |
| >gi|152980665|ref|YP_001351810.1| adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Janthinobacterium sp. Marseille] gi|151280742|gb|ABR89152.1| adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Janthinobacterium sp. Marseille] | Back alignment and taxonomy information |
|---|
Score = 532 bits (1371), Expect = e-148, Method: Compositional matrix adjust.
Identities = 233/399 (58%), Positives = 305/399 (76%)
Query: 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQY 312
G+RYLDAISSWWVN+FGH+N IN AL++QL+ LEH ML+ TH+PV++LSE+L++ T +
Sbjct: 52 GQRYLDAISSWWVNMFGHANPRINSALRSQLDMLEHAMLAGFTHEPVVQLSEQLAARTNH 111
Query: 313 KLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSF 372
+LGHCFY SDGASAVE+ALKMSFH W N G +K++F+CL+ SYHGET+GALAVT++ F
Sbjct: 112 ELGHCFYASDGASAVEIALKMSFHSWRNNGLSDKREFVCLKGSYHGETIGALAVTDVPIF 171
Query: 373 KEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQ 432
++ Y ++L +++ +PD+R G +A ++AR A LE LL++ IAA+I+EPLVQ
Sbjct: 172 RDAYDAMLQHAHVVMSPDARAARDGETAADVARRAASALETLLQERSKHIAALIVEPLVQ 231
Query: 433 CAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKG 492
CA GM MYD +YL+ VR +C+ Y +HLIADEIAVGCGRTG FFACE A +WPDFLCLSKG
Sbjct: 232 CATGMAMYDPVYLQEVRALCDKYQVHLIADEIAVGCGRTGTFFACEQAAVWPDFLCLSKG 291
Query: 493 ITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQ 552
I+GGYLPLSLVMT D+IY S Y+ + FLHSHSY+GNPLAC AALATL IF +D+++
Sbjct: 292 ISGGYLPLSLVMTRDEIYQSFYHGDVTRGFLHSHSYTGNPLACRAALATLAIFEEDDVIN 351
Query: 553 RISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNEL 612
++T+AL L HP++ NFRQ+GMIWAFD +I++ E TFS++FF AL++EL
Sbjct: 352 ANRLRAARLTEALAPLAAHPQVSNFRQRGMIWAFDAVIDNAEAASTFSRRFFTTALEHEL 411
Query: 613 LLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNELDEV 651
LLRPIG TVYLMPPYILN EI + + F ++ V
Sbjct: 412 LLRPIGPTVYLMPPYILNNEEIDGLAARTQTVFEKVMRV 450
|
Source: Janthinobacterium sp. Marseille Species: Janthinobacterium sp. Marseille Genus: Janthinobacterium Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|134093390|ref|YP_001098465.1| adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Herminiimonas arsenicoxydans] gi|133737293|emb|CAL60336.1| Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (7,8-diamino-pelargonic acid aminotransferase) (DAPA aminotransferase) [Herminiimonas arsenicoxydans] | Back alignment and taxonomy information |
|---|
Score = 525 bits (1353), Expect = e-146, Method: Compositional matrix adjust.
Identities = 238/398 (59%), Positives = 302/398 (75%)
Query: 248 LITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLS 307
L +G RYLDAISSWWVNLFGH+N IN ALK QL+ LEH ML+ TH+PV++LSE+L+
Sbjct: 45 LYDINGDRYLDAISSWWVNLFGHANPRINSALKLQLDLLEHAMLAGFTHEPVVQLSEQLA 104
Query: 308 SLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVT 367
+ T + LGHCFY SDGASAVE+ALKMSFH W N G K++F+CL+ SYHGET+GAL VT
Sbjct: 105 ARTGHVLGHCFYASDGASAVEIALKMSFHTWRNHGKPAKREFVCLKGSYHGETIGALGVT 164
Query: 368 NIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIII 427
++ F++ Y SLL +++ +PD+RN G SA ++AR A +LE LL++ ++IAAIII
Sbjct: 165 DVPIFRDAYDSLLQHAHVVASPDARNAEPGESAADVARQAAGELEKLLQERASQIAAIII 224
Query: 428 EPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL 487
EPLVQCA GM M+D +YL+ VR +C+ Y IH+IADEIAVGCGRTG FFACE A IWPDF+
Sbjct: 225 EPLVQCASGMAMHDPVYLQEVRLLCDKYQIHMIADEIAVGCGRTGTFFACEQAAIWPDFI 284
Query: 488 CLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK 547
CLSKGI+GGYLPLSLVMT D+IY S Y + FLHSHSY+GNPLAC AALATL IF +
Sbjct: 285 CLSKGISGGYLPLSLVMTRDEIYQSFYDIDVRRGFLHSHSYTGNPLACRAALATLAIFEE 344
Query: 548 DNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAA 607
D++L ++T AL L +H ++ NFR +GMIWAFD +I+ P+ TFS++FF A
Sbjct: 345 DDVLNANRARAAQLTMALAPLASHEQVANFRHRGMIWAFDAVIDSPQAAATFSQRFFSTA 404
Query: 608 LKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTF 645
L++ELLLRPIGNTVYLMPPYIL+ EI + + + F
Sbjct: 405 LEHELLLRPIGNTVYLMPPYILSDEEIAGLAARVQTVF 442
|
Source: Herminiimonas arsenicoxydans Species: Herminiimonas arsenicoxydans Genus: Herminiimonas Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|427400063|ref|ZP_18891301.1| adenosylmethionine-8-amino-7-oxononanoate transaminase [Massilia timonae CCUG 45783] gi|425720803|gb|EKU83718.1| adenosylmethionine-8-amino-7-oxononanoate transaminase [Massilia timonae CCUG 45783] | Back alignment and taxonomy information |
|---|
Score = 521 bits (1342), Expect = e-145, Method: Compositional matrix adjust.
Identities = 230/401 (57%), Positives = 307/401 (76%)
Query: 248 LITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLS 307
L + GKRYLD ISSWWVNLFGH+N IN ALK+QL+KLEH ML+ TH PV++L+E+LS
Sbjct: 43 LYDYDGKRYLDGISSWWVNLFGHANPRINAALKDQLDKLEHAMLAGFTHAPVVELAERLS 102
Query: 308 SLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVT 367
LT + LGH + SDGASAVE+A+KMSFH W N G K++F+CLQ SYHGET+GAL+VT
Sbjct: 103 KLTGHALGHATFASDGASAVEIAMKMSFHAWRNAGKPAKQEFVCLQGSYHGETIGALSVT 162
Query: 368 NIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIII 427
++ FK+ Y LL +++++ PD+RN +G +A ++AR AI +++ L ++ + IAAII+
Sbjct: 163 DVPLFKDAYGPLLRASHVVSAPDARNAGEGETAQDVARRAILEVKELFEQRGDNIAAIIV 222
Query: 428 EPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL 487
EPLVQCA GM MYD +YLKL+R++C+ +++HLIADEIAVGCGRTG FFACE A IWPDF+
Sbjct: 223 EPLVQCATGMAMYDPLYLKLLRDLCDQHHVHLIADEIAVGCGRTGTFFACEQASIWPDFM 282
Query: 488 CLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK 547
CLSKGI+GGYLPLSLV+T D IY + Y ++ FLHSHSY+GNPLAC AALATL+IF +
Sbjct: 283 CLSKGISGGYLPLSLVLTRDDIYQAFYSEDITRGFLHSHSYTGNPLACRAALATLDIFEE 342
Query: 548 DNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAA 607
D++L R + K+T AL L H + +FRQ+GMI+AFD I D ++ TFS++FF A
Sbjct: 343 DDVLNRNRELATKMTIALAPLAEHERARHFRQRGMIFAFDAIEPDKDRASTFSRRFFSTA 402
Query: 608 LKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNEL 648
++NELLLRPIG TVYLMPPY+L+ ++ + + +TF +
Sbjct: 403 VENELLLRPIGRTVYLMPPYVLDDEDVAGLAARTIKTFESV 443
|
Source: Massilia timonae CCUG 45783 Species: Massilia timonae Genus: Massilia Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|445493864|ref|ZP_21460908.1| adenosylmethionine-8-amino-7-oxononanoate transaminase BioA [Janthinobacterium sp. HH01] gi|444790025|gb|ELX11572.1| adenosylmethionine-8-amino-7-oxononanoate transaminase BioA [Janthinobacterium sp. HH01] | Back alignment and taxonomy information |
|---|
Score = 514 bits (1324), Expect = e-142, Method: Compositional matrix adjust.
Identities = 238/403 (59%), Positives = 303/403 (75%), Gaps = 6/403 (1%)
Query: 248 LITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLS 307
L G+RYLDAISSWWVNLFGH+N IN ALK+QL+ LEH ML+ TH+PVI+LSEKLS
Sbjct: 47 LYDHEGRRYLDAISSWWVNLFGHANPRINAALKDQLDTLEHAMLAGFTHEPVIELSEKLS 106
Query: 308 SLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVT 367
+LT + LGH FY SDGASAVE+ALKMSFH W N G K++F+CL+ SYHGET+GALAVT
Sbjct: 107 ALTCHVLGHSFYASDGASAVEIALKMSFHSWRNNGKSGKQEFVCLKGSYHGETIGALAVT 166
Query: 368 NIQSFKEIYTSLLNKTYIITTPDSRNIN--KGNSANEIARCAIFDLEILLKKNHNKIAAI 425
++ FK+ Y LL + + +PD+RN N +G +A ++AR A D+E L + +KIAAI
Sbjct: 167 DVALFKDAYGPLLRASQTVMSPDARNANAAEGETAEDMARKAAADVERLFIERADKIAAI 226
Query: 426 IIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPD 485
IIEPLVQCA GM M+D +YLKLVRE+C+ +++HLI DEIAVGCGRTG FFACE A +WPD
Sbjct: 227 IIEPLVQCATGMAMHDPLYLKLVRELCDRHSVHLILDEIAVGCGRTGTFFACEQAGVWPD 286
Query: 486 FLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIF 545
FLCLSKGI+GGYLPLSLVMT ++IY + Y + FLHSHSY+GNPLAC AALATL+IF
Sbjct: 287 FLCLSKGISGGYLPLSLVMTRNEIYEAFYSSDVTRGFLHSHSYTGNPLACRAALATLQIF 346
Query: 546 NKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFV 605
+D++L ++T AL L H ++ NFRQ+GMIWAFD I P+ FS++FF
Sbjct: 347 EEDDVLATNRVKAARLTAALQPLAQHKQVRNFRQRGMIWAFDAIAATPD----FSRRFFA 402
Query: 606 AALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNEL 648
A+++ELL+RPIG TVY+MPPYILN EI + + F+++
Sbjct: 403 TAVEHELLMRPIGATVYMMPPYILNDEEIDGLAANTLAVFDKV 445
|
Source: Janthinobacterium sp. HH01 Species: Janthinobacterium sp. HH01 Genus: Janthinobacterium Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|237749138|ref|ZP_04579618.1| adenosylmethionine-8-amino-7-oxononanoate transaminase [Oxalobacter formigenes OXCC13] gi|229380500|gb|EEO30591.1| adenosylmethionine-8-amino-7-oxononanoate transaminase [Oxalobacter formigenes OXCC13] | Back alignment and taxonomy information |
|---|
Score = 511 bits (1315), Expect = e-142, Method: Compositional matrix adjust.
Identities = 236/396 (59%), Positives = 299/396 (75%), Gaps = 1/396 (0%)
Query: 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQY 312
G RYLDAISSWW N+FGH+N +I+KALK+QL+ LEH ML+ TH+PV++LSE+LS LT
Sbjct: 50 GNRYLDAISSWWTNIFGHANPFISKALKDQLDTLEHAMLAGCTHEPVVELSERLSVLTGN 109
Query: 313 KLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSF 372
LGHCFYGSDGASAVE+ALKMSFHYW N G K++FICL+NSYHGET+GAL+VT++ F
Sbjct: 110 TLGHCFYGSDGASAVEIALKMSFHYWKNSGHPEKQEFICLKNSYHGETIGALSVTDVTLF 169
Query: 373 KEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQ 432
++ Y L+ + I+ +PDSR+ G +A ++A A LE LL++ KIAAII+EPL+Q
Sbjct: 170 RDSYAPLIRNSNIVESPDSRHAKDGQTATDVANAAADKLEALLQEKSAKIAAIIVEPLIQ 229
Query: 433 CAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKG 492
CA G +MYD +YLK VRE+C+ Y IH IADEIAVG GRTG FFACE A IWPD LCLSK
Sbjct: 230 CAAGFVMYDPLYLKRVRELCDRYKIHFIADEIAVGFGRTGTFFACEQAGIWPDMLCLSKA 289
Query: 493 ITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQ 552
ITGG+LPLSLVMTTD ++N+ Y + FLHSHSY+GNPLAC AALATL++F N++
Sbjct: 290 ITGGFLPLSLVMTTDDVFNAFYDMDITRGFLHSHSYTGNPLACRAALATLDLFKNHNVIA 349
Query: 553 RISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNEL 612
R +++++AL L HP+ +FR KGMIWAFDV +E +Q TF ++FF AL++EL
Sbjct: 350 RNQTVSRQLSEALKPLEIHPRNKHFRNKGMIWAFDVDLETEKQ-ATFPRRFFEKALQHEL 408
Query: 613 LLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNEL 648
L+RPIGNTVYLMPPYILN EI + F E+
Sbjct: 409 LMRPIGNTVYLMPPYILNGEEIGLLAHKTISVFEEM 444
|
Source: Oxalobacter formigenes OXCC13 Species: Oxalobacter formigenes Genus: Oxalobacter Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|385207184|ref|ZP_10034052.1| adenosylmethionine-8-amino-7-oxononanoate transaminase [Burkholderia sp. Ch1-1] gi|385179522|gb|EIF28798.1| adenosylmethionine-8-amino-7-oxononanoate transaminase [Burkholderia sp. Ch1-1] | Back alignment and taxonomy information |
|---|
Score = 508 bits (1308), Expect = e-141, Method: Compositional matrix adjust.
Identities = 224/395 (56%), Positives = 295/395 (74%)
Query: 252 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQ 311
+G RYLDAISSWWVNLFGH+NS IN ALK+QL+ LEH ML+ TH+P I+L+E+LS+LT
Sbjct: 52 AGHRYLDAISSWWVNLFGHANSRINAALKDQLDTLEHAMLAGCTHEPAIELAERLSALTG 111
Query: 312 YKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQS 371
LGH F+ SDGASAVE+ALKMSFH W N+GF +K++F+C+ NSYHGET+GAL VT++
Sbjct: 112 NTLGHAFFASDGASAVEIALKMSFHSWRNRGFADKQEFVCIANSYHGETIGALGVTDVAL 171
Query: 372 FKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLV 431
FK+ Y L+ ++ +PD+R G +A ++AR A+ + L + KIAA+I+EPLV
Sbjct: 172 FKDAYDPLIRHAHVAASPDARLAEAGETAADVARRALDHVRSLFEARATKIAALIVEPLV 231
Query: 432 QCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSK 491
QCA GM M+D+ Y+ +R +C+ Y +HLIADEIAVGCGRTG FFACE A IWPDF+CLSK
Sbjct: 232 QCAAGMAMHDASYIAGLRALCDQYGVHLIADEIAVGCGRTGTFFACEQAGIWPDFICLSK 291
Query: 492 GITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNIL 551
GI+GGYLPLS+V++ D+I+ + Y+ + FLHSHSY+GNPLAC AALATL++F DN+L
Sbjct: 292 GISGGYLPLSIVLSRDEIFEAFYHDDTARGFLHSHSYTGNPLACRAALATLDLFATDNVL 351
Query: 552 QRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNE 611
+Q K+ AL L H ++ N RQ G I+AFD +I+D +Q TFS++FF AL+ E
Sbjct: 352 AANAQKSAKLKAALAPLAGHEQVRNLRQCGTIFAFDAVIDDAQQARTFSRRFFENALQRE 411
Query: 612 LLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFN 646
LLLRPIG TVYLMPPYIL+ E+ + S +TF
Sbjct: 412 LLLRPIGTTVYLMPPYILDDEELALLASRTRETFE 446
|
Source: Burkholderia sp. Ch1-1 Species: Burkholderia sp. Ch1-1 Genus: Burkholderia Family: Burkholderiaceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|209518227|ref|ZP_03267054.1| adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Burkholderia sp. H160] gi|209501342|gb|EEA01371.1| adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Burkholderia sp. H160] | Back alignment and taxonomy information |
|---|
Score = 505 bits (1301), Expect = e-140, Method: Compositional matrix adjust.
Identities = 220/395 (55%), Positives = 297/395 (75%)
Query: 252 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQ 311
+G RYLDAISSWWVNLFGH+N IN ALK+QL+ LEH ML+ TH+P ++L+E+LS+LT
Sbjct: 52 AGHRYLDAISSWWVNLFGHANPRINAALKDQLDTLEHAMLAGCTHEPAVELAERLSALTG 111
Query: 312 YKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQS 371
LGH F+ SDGASAVE+ALKMSFH W N+G+ +K++F+C+ NSYHGET+GAL VT++
Sbjct: 112 NTLGHAFFASDGASAVEIALKMSFHSWRNRGYADKQEFVCIANSYHGETIGALGVTDVAL 171
Query: 372 FKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLV 431
FK+ Y L+ +++ +PD+R G SA ++AR A+ ++ L N+IAA+IIEPLV
Sbjct: 172 FKDAYDPLIRHAHVVASPDARLAQAGESAADVARRALDNVRALFDARANRIAALIIEPLV 231
Query: 432 QCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSK 491
QCA GM M+D+ Y+ +R +C+ Y +HLIADEIAVGCGRTG FFACE A +WPDFLCLSK
Sbjct: 232 QCAAGMAMHDASYVAGLRALCDQYGVHLIADEIAVGCGRTGTFFACEQAGVWPDFLCLSK 291
Query: 492 GITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNIL 551
GI+GGYLPLS+V++ D+I+ + Y+ + FLHSHSY+GNPLAC AALATL++F D++L
Sbjct: 292 GISGGYLPLSIVLSRDEIFAAFYHDDTARGFLHSHSYTGNPLACRAALATLDLFASDDVL 351
Query: 552 QRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNE 611
++ + AL L H ++ N RQ+G I+AFD +I+DP Q +TFS++FF AL+ E
Sbjct: 352 TANARKSATLKAALAPLAGHAQVRNLRQRGTIFAFDAMIDDPLQAKTFSRRFFENALQRE 411
Query: 612 LLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFN 646
LLLRPIG TVYLMPPYIL+ E+ + + TF+
Sbjct: 412 LLLRPIGTTVYLMPPYILDDEELALLAARTRATFD 446
|
Source: Burkholderia sp. H160 Species: Burkholderia sp. H160 Genus: Burkholderia Family: Burkholderiaceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|91781583|ref|YP_556789.1| adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Burkholderia xenovorans LB400] gi|91685537|gb|ABE28737.1| aminotransferase [Burkholderia xenovorans LB400] | Back alignment and taxonomy information |
|---|
Score = 505 bits (1301), Expect = e-140, Method: Compositional matrix adjust.
Identities = 222/395 (56%), Positives = 296/395 (74%)
Query: 252 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQ 311
+G RYLDAISSWWVNLFGH+N IN ALK+QL+ LEH ML+ TH+P I+L+E+LS+LT
Sbjct: 51 AGHRYLDAISSWWVNLFGHANPRINAALKDQLDTLEHAMLAGCTHEPAIELAERLSALTG 110
Query: 312 YKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQS 371
LGH F+ SDGASAVE+ALKMSFH W N+GF +K++F+C+ NSYHGET+GAL VT++
Sbjct: 111 NTLGHAFFASDGASAVEIALKMSFHSWRNRGFADKQEFVCIANSYHGETIGALGVTDVAL 170
Query: 372 FKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLV 431
FK+ Y L+ +++ +PD+R G +A ++AR A+ + L + KIAA+I+EPLV
Sbjct: 171 FKDAYDPLIRHAHVVASPDARLAQAGETAADVARRALDHVRSLFEARATKIAALIVEPLV 230
Query: 432 QCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSK 491
QCA GM M+D+ Y+ +R +C+ Y +HLIADEIAVGCGRTG FFACE A IWPDF+CLSK
Sbjct: 231 QCAAGMAMHDASYIAGLRTLCDQYGVHLIADEIAVGCGRTGTFFACEQAGIWPDFICLSK 290
Query: 492 GITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNIL 551
GI+GGYLPLS+V++ D+I+ + Y+ + FLHSHSY+GNPLAC AALATL++F DN++
Sbjct: 291 GISGGYLPLSIVLSRDEIFEAFYHDDTARGFLHSHSYTGNPLACRAALATLDLFAADNVI 350
Query: 552 QRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNE 611
+Q K+ AL L H ++ N RQ G I+AFD +I+D +Q TFS++FF AL+ E
Sbjct: 351 AVNAQKSAKLKAALAPLAEHEQVRNLRQCGTIFAFDALIDDAQQARTFSRRFFENALRRE 410
Query: 612 LLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFN 646
LLLRPIG TVYLMPPYIL+ E+ + S +TF+
Sbjct: 411 LLLRPIGTTVYLMPPYILDDEELALLASRTRETFD 445
|
Source: Burkholderia xenovorans LB400 Species: Burkholderia xenovorans Genus: Burkholderia Family: Burkholderiaceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|340789433|ref|YP_004754898.1| adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Collimonas fungivorans Ter331] gi|340554700|gb|AEK64075.1| Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Collimonas fungivorans Ter331] | Back alignment and taxonomy information |
|---|
Score = 504 bits (1298), Expect = e-139, Method: Compositional matrix adjust.
Identities = 231/401 (57%), Positives = 304/401 (75%), Gaps = 9/401 (2%)
Query: 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQY 312
GKRYLD ISSWWVNLFGH+N IN ALK+QL++LEH ML+ TH+PV++LSE+L++ T
Sbjct: 60 GKRYLDGISSWWVNLFGHANPRINAALKDQLDQLEHAMLAGFTHEPVVQLSEQLAARTGN 119
Query: 313 KLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSF 372
LGHCFY SDGASAVE+ALKMSFH W N G+ +K++F+CL+ SYHGET+GALAVT++ F
Sbjct: 120 VLGHCFYASDGASAVEIALKMSFHAWRNAGYTDKQEFVCLKGSYHGETIGALAVTDVPLF 179
Query: 373 KEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQ 432
++ Y LL + +++ +PD+R G SA ++A A LE LL++ + IAAIIIEPLVQ
Sbjct: 180 RDAYGPLLRQAHVVASPDARGARDGESAADVALRAAATLEKLLQQRSSHIAAIIIEPLVQ 239
Query: 433 CAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAE------IWPDF 486
CA GM M+D +YL+ +R +C+ Y +HLI DEIAVGCGRTG FFA E A +WPDF
Sbjct: 240 CATGMAMHDPVYLRELRALCDRYKVHLIFDEIAVGCGRTGTFFASEQAAAPGQEPVWPDF 299
Query: 487 LCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN 546
LCLSKGI+GGYLPLSLVMT D+IY + Y + FLHSHSY+GNPLAC AALATL IF
Sbjct: 300 LCLSKGISGGYLPLSLVMTRDEIYRAFYDNDLARGFLHSHSYTGNPLACRAALATLAIFE 359
Query: 547 KDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVA 606
+D+++ + ++IT AL L HP++ +FRQ+GMIWAFD +I++ TFS++FF +
Sbjct: 360 EDDVINVNRERAQRITAALEPLAQHPQVRHFRQRGMIWAFDAVIDNKALAATFSRRFFAS 419
Query: 607 ALKNELLLRPIGNTVYLMPPYILNKNEIQHM---TSAIFQT 644
A+++ELLLRPIG TVYLMPPYIL+ EI + T+A+F++
Sbjct: 420 AVEHELLLRPIGKTVYLMPPYILDDQEIDLLATRTAAVFES 460
|
Source: Collimonas fungivorans Ter331 Species: Collimonas fungivorans Genus: Collimonas Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|237746985|ref|ZP_04577465.1| aminotransferase [Oxalobacter formigenes HOxBLS] gi|229378336|gb|EEO28427.1| aminotransferase [Oxalobacter formigenes HOxBLS] | Back alignment and taxonomy information |
|---|
Score = 503 bits (1296), Expect = e-139, Method: Compositional matrix adjust.
Identities = 230/396 (58%), Positives = 299/396 (75%), Gaps = 1/396 (0%)
Query: 255 RYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKL 314
RY DAISSWW NLFGH+N +I+KA+K+QL+KLEH ML+ TH+PV++LSE+LS+LT L
Sbjct: 49 RYFDAISSWWTNLFGHANPFISKAVKDQLDKLEHGMLAGCTHEPVVELSERLSALTGNAL 108
Query: 315 GHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKE 374
GHCFY SDGASA+E+ALKMSFHYW N G K++F+CL+NSYHGET+GAL+VT++ F++
Sbjct: 109 GHCFYASDGASAIEIALKMSFHYWKNSGQPQKQEFVCLENSYHGETIGALSVTDVTLFRD 168
Query: 375 IYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCA 434
Y L+ ++I+ +PD+R G + +IAR A LE LL++ IAA+I+EPLVQCA
Sbjct: 169 SYAPLIRNSHIVASPDNRQAKDGQTGTDIAREAADKLETLLQEKAGTIAAVIVEPLVQCA 228
Query: 435 GGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGIT 494
G +MY YLK +RE+C +Y++HLIADEIAVG GRTG FFACE A IWPDFLCLSKGIT
Sbjct: 229 AGFVMYSPEYLKRIRELCKHYHVHLIADEIAVGFGRTGTFFACEQAGIWPDFLCLSKGIT 288
Query: 495 GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRI 554
GGYLPLS VMTTD ++N+ Y ++ FLHSHSY+GNPLAC AALA+L++F N++ +
Sbjct: 289 GGYLPLSAVMTTDTVFNAFYDRDITRGFLHSHSYTGNPLACRAALASLDLFRLHNVISQN 348
Query: 555 SQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLL 614
KK+ KAL L THPK+ +FR GMIWAFD ++ +++ F ++FF ALK+ELL+
Sbjct: 349 RGISKKLDKALDPLKTHPKVRHFRNCGMIWAFDAVMPAEKEV-AFPRRFFETALKHELLV 407
Query: 615 RPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNELDE 650
RPIGNTVYLMPPYILN +I + F E+ E
Sbjct: 408 RPIGNTVYLMPPYILNDTDIALLADKTKAVFEEVIE 443
|
Source: Oxalobacter formigenes HOxBLS Species: Oxalobacter formigenes Genus: Oxalobacter Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 965 | ||||||
| TIGR_CMR|CJE_0352 | 427 | CJE_0352 "adenosylmethionine-- | 0.395 | 0.894 | 0.446 | 9.1e-84 | |
| UNIPROTKB|P12996 | 346 | bioB "biotin synthase monomer" | 0.293 | 0.817 | 0.533 | 2.3e-78 | |
| UNIPROTKB|Q9KSZ4 | 350 | bioB "Biotin synthase" [Vibrio | 0.293 | 0.808 | 0.526 | 7.9e-78 | |
| TIGR_CMR|VC_1112 | 350 | VC_1112 "biotin synthase" [Vib | 0.293 | 0.808 | 0.526 | 7.9e-78 | |
| TIGR_CMR|SO_2740 | 350 | SO_2740 "biotin synthase" [She | 0.294 | 0.811 | 0.521 | 2.7e-77 | |
| TIGR_CMR|BA_4341 | 462 | BA_4341 "adenosylmethionine--8 | 0.417 | 0.872 | 0.360 | 1.8e-76 | |
| TIGR_CMR|CBU_1007 | 321 | CBU_1007 "biotin synthase" [Co | 0.294 | 0.884 | 0.510 | 1.7e-75 | |
| TIGR_CMR|CPS_2594 | 346 | CPS_2594 "biotin synthase" [Co | 0.322 | 0.898 | 0.490 | 9.3e-75 | |
| TIGR_CMR|NSE_0612 | 325 | NSE_0612 "biotin synthase" [Ne | 0.293 | 0.870 | 0.480 | 2.9e-71 | |
| TIGR_CMR|ECH_0352 | 326 | ECH_0352 "biotin synthase" [Eh | 0.312 | 0.926 | 0.453 | 7e-70 |
| TIGR_CMR|CJE_0352 CJE_0352 "adenosylmethionine--8-amino-7-oxononanoate aminotransferase" [Campylobacter jejuni RM1221 (taxid:195099)] | Back alignment and assigned GO terms |
|---|
Score = 839 (300.4 bits), Expect = 9.1e-84, P = 9.1e-84
Identities = 181/405 (44%), Positives = 251/405 (61%)
Query: 248 LITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLS 307
L F K Y+D +SSWWVNLFGH N I A+K Q+++LEHV+L+ TH+P+IKLS +L
Sbjct: 40 LYDFDDKAYMDCVSSWWVNLFGHCNEKIANAIKKQVDELEHVILAGFTHEPIIKLSARLC 99
Query: 308 SLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVT 367
CFY +G+SA+EVALKMSFHY NKG + K KF+ L NSYHGETLGAL+V
Sbjct: 100 EKVGRNFNKCFYADNGSSAIEVALKMSFHYHLNKG-VKKSKFLSLSNSYHGETLGALSVG 158
Query: 368 NIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEIL---LKKNHNKXXX 424
++ +K+ Y LL + ++TP + +G + +LEIL L+KN ++
Sbjct: 159 DVALYKDTYKPLLLEC--LSTP----VPQGKDYTQ-------ELEILKDILEKNASEICA 205
Query: 425 XXXEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWP 484
EPLVQCAG M MY++ ++ ++C+ + + +I DEIAVG GRTG FA + P
Sbjct: 206 FILEPLVQCAGNMHMYEAGFIDEAIKLCHKFGVQVIFDEIAVGFGRTGTLFALHQCKQSP 265
Query: 485 DFLCLSKGITGGYLPLSLVMTTDXXXXXXXXXXXXX-XFLHSHSYSGNPLACCAALATLE 543
DF+CLSKGITGG++PLS+V+T D FLHSHSY+GN LAC AA A L+
Sbjct: 266 DFICLSKGITGGFMPLSVVLTRDEIYNAFYDTYESQKAFLHSHSYTGNTLACAAANAVLD 325
Query: 544 IFNKDNILQRISQDMKK-ITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKK 602
IF +NIL + +Q + + I K + L + NFR GMI AFD++ +++ F
Sbjct: 326 IFEDENILVK-NQILSEFIKKEFSRLEKFDFLGNFRTCGMISAFDILSTKYKRVGLF--- 381
Query: 603 FFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNE 647
F AL+ LLLRP+ NT+Y MPPYI+ K +I ++ ++ Q F E
Sbjct: 382 VFQKALEKGLLLRPLANTIYFMPPYIITKEQIVYVLESLEQIFKE 426
|
|
| UNIPROTKB|P12996 bioB "biotin synthase monomer" [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 788 (282.4 bits), Expect = 2.3e-78, P = 2.3e-78
Identities = 151/283 (53%), Positives = 200/283 (70%)
Query: 666 AQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQ 725
AQ+VHR++FD +++++ LLSIKTG C EDC YCPQS+ Y T + A +++ +E V+ +A+
Sbjct: 27 AQQVHRQHFDPRQVQVSTLLSIKTGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLESAR 86
Query: 726 KAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVG 785
KAK+ G+TRFCMGAAW+ +RD+ +E M+ VK +GLE C+TLG L+E+QA RL G
Sbjct: 87 KAKAAGSTRFCMGAAWKNPHERDMPYLEQMVQGVKAMGLEACMTLGTLSESQAQRLANAG 146
Query: 786 LDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVXXXXXXXXXXXLSESRDQRAELI 845
LDYYNHNLDTSP+ YG+II+TR Y+ RL+TL+ VR+ L E+ RA L+
Sbjct: 147 LDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGLGETVKDRAGLL 206
Query: 846 FQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRK 905
QLANL PESVPIN LV++KGTPL + +D +FIRTIAVARI MPTS +R+SAGR+
Sbjct: 207 LQLANLPTPPESVPINMLVKVKGTPLADNDDVDAFDFIRTIAVARIMMPTSYVRLSAGRE 266
Query: 906 EMGETTQAFCFLAGANSIFYGXXXXXXXXXXXXXXSKLLKKLG 948
+M E TQA CF+AGANSIFYG +L +KLG
Sbjct: 267 QMNEQTQAMCFMAGANSIFYGCKLLTTPNPEEDKDLQLFRKLG 309
|
|
| UNIPROTKB|Q9KSZ4 bioB "Biotin synthase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
Score = 783 (280.7 bits), Expect = 7.9e-78, P = 7.9e-78
Identities = 149/283 (52%), Positives = 198/283 (69%)
Query: 666 AQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQ 725
AQ+VHR + N ++++ LLSIKTG C EDC YCPQS HY T++ +++ +E V+ AAQ
Sbjct: 27 AQQVHRLHHPHNHVQVSTLLSIKTGACPEDCKYCPQSAHYRTDVDKERLMEVERVLDAAQ 86
Query: 726 KAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVG 785
KAK+ G+TRFCMGAAW+ K+RD+ ++ MI VK +GLETC+TLGML +QA +L + G
Sbjct: 87 KAKNSGSTRFCMGAAWKNPKERDMPLLKEMIRGVKDMGLETCMTLGMLTPDQAQQLAQAG 146
Query: 786 LDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVXXXXXXXXXXXLSESRDQRAELI 845
LDYYNHNLDTSP+ YG+II+TR Y++RL+TL +VR+ + ES + RA L+
Sbjct: 147 LDYYNHNLDTSPEFYGNIITTRTYQDRLDTLSHVRDAGMKICSGGIIGMGESTNDRAGLL 206
Query: 846 FQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRK 905
+LANL +PESVPIN LV++KGTPL ++P +F+R IAVARI MP S +R+SAGR+
Sbjct: 207 VELANLPTHPESVPINMLVKVKGTPLEQVDDVEPFDFVRLIAVARIMMPKSAVRLSAGRE 266
Query: 906 EMGETTQAFCFLAGANSIFYGXXXXXXXXXXXXXXSKLLKKLG 948
+M E QA CF+AGANSIFYG L KKLG
Sbjct: 267 KMNEQMQALCFMAGANSIFYGCKLLTTPNPAEDSDMLLFKKLG 309
|
|
| TIGR_CMR|VC_1112 VC_1112 "biotin synthase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
|---|
Score = 783 (280.7 bits), Expect = 7.9e-78, P = 7.9e-78
Identities = 149/283 (52%), Positives = 198/283 (69%)
Query: 666 AQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQ 725
AQ+VHR + N ++++ LLSIKTG C EDC YCPQS HY T++ +++ +E V+ AAQ
Sbjct: 27 AQQVHRLHHPHNHVQVSTLLSIKTGACPEDCKYCPQSAHYRTDVDKERLMEVERVLDAAQ 86
Query: 726 KAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVG 785
KAK+ G+TRFCMGAAW+ K+RD+ ++ MI VK +GLETC+TLGML +QA +L + G
Sbjct: 87 KAKNSGSTRFCMGAAWKNPKERDMPLLKEMIRGVKDMGLETCMTLGMLTPDQAQQLAQAG 146
Query: 786 LDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVXXXXXXXXXXXLSESRDQRAELI 845
LDYYNHNLDTSP+ YG+II+TR Y++RL+TL +VR+ + ES + RA L+
Sbjct: 147 LDYYNHNLDTSPEFYGNIITTRTYQDRLDTLSHVRDAGMKICSGGIIGMGESTNDRAGLL 206
Query: 846 FQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRK 905
+LANL +PESVPIN LV++KGTPL ++P +F+R IAVARI MP S +R+SAGR+
Sbjct: 207 VELANLPTHPESVPINMLVKVKGTPLEQVDDVEPFDFVRLIAVARIMMPKSAVRLSAGRE 266
Query: 906 EMGETTQAFCFLAGANSIFYGXXXXXXXXXXXXXXSKLLKKLG 948
+M E QA CF+AGANSIFYG L KKLG
Sbjct: 267 KMNEQMQALCFMAGANSIFYGCKLLTTPNPAEDSDMLLFKKLG 309
|
|
| TIGR_CMR|SO_2740 SO_2740 "biotin synthase" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 778 (278.9 bits), Expect = 2.7e-77, P = 2.7e-77
Identities = 148/284 (52%), Positives = 196/284 (69%)
Query: 665 RAQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAA 724
+A +HR+ +D NE++++ LLSIKTG C EDC YCPQS Y+T + ++L++E+V+T A
Sbjct: 29 KAHSIHREEYDPNEVQISRLLSIKTGACPEDCKYCPQSARYDTGLEKERLLAMETVLTEA 88
Query: 725 QKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKV 784
+ AK+ GA+RFCMGAAWR KD+D+ ++ M+ EVK +G+ETC+TLGML+ QA L +
Sbjct: 89 RSAKAAGASRFCMGAAWRNPKDKDMPYLKQMVQEVKALGMETCMTLGMLSAEQANELAEA 148
Query: 785 GLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVXXXXXXXXXXXLSESRDQRAEL 844
GLDYYNHNLDTSP+ YGD+I+TR Y+NRL+TL +VR + E RA L
Sbjct: 149 GLDYYNHNLDTSPEYYGDVITTRTYQNRLDTLSHVRASGMKVCSGGIVGMGEKATDRAGL 208
Query: 845 IFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGR 904
+ QLANL +P+SVPIN LV++ GTP LDPLEF+RTIAVARI MP SR+R+SAGR
Sbjct: 209 LQQLANLPQHPDSVPINMLVKVAGTPFEKLDDLDPLEFVRTIAVARILMPLSRVRLSAGR 268
Query: 905 KEMGETTQAFCFLAGANSIFYGXXXXXXXXXXXXXXSKLLKKLG 948
+ M + QA CF AGANSIFYG L ++LG
Sbjct: 269 ENMSDELQAMCFFAGANSIFYGCKLLTTPNPEESDDMGLFRRLG 312
|
|
| TIGR_CMR|BA_4341 BA_4341 "adenosylmethionine--8-amino-7-oxononanoate aminotransferase" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 745 (267.3 bits), Expect = 1.8e-76, Sum P(2) = 1.8e-76
Identities = 148/411 (36%), Positives = 235/411 (57%)
Query: 247 KLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKL 306
KL +G Y D +SS W+N+ GH +++A++ QLNK+ H + L + P I L+EK+
Sbjct: 51 KLYDVNGNEYWDGVSSIWLNVHGHQVPELDEAIREQLNKIAHSTMLGLANVPSILLAEKI 110
Query: 307 SSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAV 366
+ L FY G+SAVE+A+KM+F YW +KG K++F+ L+ +YHG+T+GA++V
Sbjct: 111 IEVVPEGLKKVFYSDSGSSAVEIAIKMAFQYWQHKGKPKKQRFVTLKEAYHGDTIGAVSV 170
Query: 367 TNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKXXXXX 426
I F ++Y+SLL + + P + GN EI + + ++E LLK H +
Sbjct: 171 GAIDLFYQVYSSLLFEAIKMPYPYTYRSPYGNDKAEIVKKHLEEMEELLKDKHEEIAAII 230
Query: 427 XEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDF 486
EPL+Q AGGMI YL+ +R +C YN+ I DE+A G GRTGK FACEH + PD
Sbjct: 231 VEPLMQGAGGMITMPKGYLRGLRNLCTKYNVLFITDEVATGFGRTGKMFACEHENVTPDI 290
Query: 487 LCLSKGITGGYLPLSLVMTTDXXXXXXXXXXXXX-XFLHSHSYSGNPLACCAALATLEIF 545
L KG+TGGYLP+++ +TTD F H HSY+GNPL C A+A LE++
Sbjct: 291 LTAGKGLTGGYLPVAITVTTDEIYNAFLGSYEEQKTFFHGHSYTGNPLGCAVAIANLELY 350
Query: 546 NKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETF--SKKF 603
K N+++ +++ + + L L + + RQ G++ + ++++ E E F +++
Sbjct: 351 EKTNLIEEVARKTEYVATQLEELFACKHVGDIRQCGLMVGIE-LVKNKETKEAFEWTERV 409
Query: 604 FVAALKNE----LLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNELDE 650
V K ++LRP+GNT+ MPP +EI M +++ +++ E
Sbjct: 410 GVQVCKRSRELGMILRPLGNTIVFMPPLASTIDEIDEMLRILYKAISDITE 460
|
|
| TIGR_CMR|CBU_1007 CBU_1007 "biotin synthase" [Coxiella burnetii RSA 493 (taxid:227377)] | Back alignment and assigned GO terms |
|---|
Score = 761 (272.9 bits), Expect = 1.7e-75, P = 1.7e-75
Identities = 145/284 (51%), Positives = 190/284 (66%)
Query: 665 RAQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAA 724
+A + HR +FD ++EL L SIKTG C EDC YCPQS HY T++ K++++E+V+ A
Sbjct: 25 KAYETHRSHFDVRDMELCTLSSIKTGTCPEDCAYCPQSGHYKTDVEREKLINLEAVLEQA 84
Query: 725 QKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKV 784
+ AK +GA RFCMGAAWR R+L + MI VK +GLETC+TLGML++ QA +LK+
Sbjct: 85 KVAKENGARRFCMGAAWRSPPKRELPKVLEMIKSVKALGLETCVTLGMLDQEQALQLKEA 144
Query: 785 GLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVXXXXXXXXXXXLSESRDQRAEL 844
GLD+YNHNLDTSP+ Y II+TR Y++R+ TLKNVRN + ESR R +L
Sbjct: 145 GLDFYNHNLDTSPEFYKKIITTRTYQDRMETLKNVRNAGINVCCGGILGMGESRADRIQL 204
Query: 845 IFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGR 904
+ +L L P S+PIN L+ IKGTPL + +DP EFI+TIA+ R+ PTS IR+SAGR
Sbjct: 205 LLELYQLPEPPTSIPINQLIPIKGTPLENTKAIDPFEFIKTIAITRLLFPTSVIRLSAGR 264
Query: 905 KEMGETTQAFCFLAGANSIFYGXXXXXXXXXXXXXXSKLLKKLG 948
+ M + QA+CF+AGANSIFYG LLKKLG
Sbjct: 265 EAMSDELQAWCFMAGANSIFYGDKLLTAKNPGQNRDVNLLKKLG 308
|
|
| TIGR_CMR|CPS_2594 CPS_2594 "biotin synthase" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 754 (270.5 bits), Expect = 9.3e-75, P = 9.3e-75
Identities = 153/312 (49%), Positives = 199/312 (63%)
Query: 637 MTSAIFQTFNELDEVIXXXXXXXXXXXXRAQKVHRKYFDANEIELAVLLSIKTGGCTEDC 696
M S + +N L EV +AQ +HR+ F+ NE++++ LLSIKTG C EDC
Sbjct: 1 MNSILRHNWN-LKEVEALFAMPFNDLMFKAQTIHRENFNPNEVQVSTLLSIKTGACPEDC 59
Query: 697 GYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMI 756
YC QS T++ +L++E V+ AAQ+AK G+TRFCMGAAWR K+RD+ + +M+
Sbjct: 60 KYCSQSARNKTDLEKESLLAVEKVLEAAQRAKEMGSTRFCMGAAWRNPKERDMPYVLDMV 119
Query: 757 CEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTL 816
VK +G+ETC+TLGML+ +QA +L GLDYYNHNLDTSP+ Y II+TR +++RL+TL
Sbjct: 120 KSVKALGMETCMTLGMLSGDQADQLNGAGLDYYNHNLDTSPEHYNQIITTRTFQDRLDTL 179
Query: 817 KNVRNVXXXXXXXXXXXLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSI 876
NVR+ L E R+ L+ QLANLNP PESVPIN LV+++GTPL
Sbjct: 180 SNVRSAGMKVCSGGIVGLGEKAVDRSSLLIQLANLNPQPESVPINMLVKVEGTPLADIDD 239
Query: 877 LDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGXXXXXXXXXX 936
L+ +FIR IAVARI MP S +R+SAGR M E QA CFLAGANSIFYG
Sbjct: 240 LESFDFIRCIAVARIMMPHSHVRLSAGRTAMNEQMQAMCFLAGANSIFYGCKLLTAENPE 299
Query: 937 XXXXSKLLKKLG 948
L +KLG
Sbjct: 300 TNQDIALFEKLG 311
|
|
| TIGR_CMR|NSE_0612 NSE_0612 "biotin synthase" [Neorickettsia sennetsu str. Miyayama (taxid:222891)] | Back alignment and assigned GO terms |
|---|
Score = 721 (258.9 bits), Expect = 2.9e-71, P = 2.9e-71
Identities = 136/283 (48%), Positives = 188/283 (66%)
Query: 666 AQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQ 725
AQ VHR+ F NE++LA+LLS+KTGGC E+C YCPQS HY+T + ++ +E V+ AA+
Sbjct: 25 AQHVHRENFPHNEVQLAMLLSVKTGGCPENCSYCPQSAHYDTGLRKEPVMHVEKVLEAAK 84
Query: 726 KAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVG 785
+A GATRFC+GAAWR + +DLD + MI +KK+GLETC +LG+L+ QA LK G
Sbjct: 85 RAVELGATRFCIGAAWRGPRGKDLDIVCEMISRIKKLGLETCASLGLLSYEQAVSLKAAG 144
Query: 786 LDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVXXXXXXXXXXXLSESRDQRAELI 845
LD+YNHN+DTS + Y II+TR + +R+ TL+NV + ES + R +++
Sbjct: 145 LDFYNHNIDTSQEYYSKIITTRRFSDRIETLENVAKAGLKICSGGILGMGESNEDRIKML 204
Query: 846 FQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRK 905
+L++L+ PES+PIN L+ I GTPL + +DPL+F+R IA+ARI P S +R+SAGR+
Sbjct: 205 VELSHLSFPPESIPINKLIPIPGTPLAEKNAVDPLDFVRIIALARIMFPKSYVRLSAGRE 264
Query: 906 EMGETTQAFCFLAGANSIFYGXXXXXXXXXXXXXXSKLLKKLG 948
M + Q CF+AGANSIFYG KLL KLG
Sbjct: 265 SMSDELQTLCFIAGANSIFYGEKLLTSANSDPESDEKLLLKLG 307
|
|
| TIGR_CMR|ECH_0352 ECH_0352 "biotin synthase" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)] | Back alignment and assigned GO terms |
|---|
Score = 708 (254.3 bits), Expect = 7.0e-70, P = 7.0e-70
Identities = 137/302 (45%), Positives = 190/302 (62%)
Query: 647 ELDEVIXXXXXXXXXXXXRAQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHYN 706
+LDE++ R+ HR++F+ NEI+LA LL+IKTGGC E+C YC QS HY
Sbjct: 12 QLDEILELFNTPFNDLILRSHLTHRQFFNNNEIQLAALLNIKTGGCPENCRYCSQSAHYK 71
Query: 707 TEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLET 766
T++ +L +E++ A Q AK+ GA RFC AAWR+L+D+D++ I N+I +K LE+
Sbjct: 72 TDLQKEALLDVENIKKAIQTAKNSGADRFCFAAAWRQLRDKDIEYICNIINLIKSEKLES 131
Query: 767 CLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVXXXX 826
C +LGM+ +QA +LK GLD+YNHN+DTS Y ++ +TR+Y++RL +L N+
Sbjct: 132 CASLGMITLDQAKKLKNAGLDFYNHNIDTSRDFYSNVTTTRNYDDRLASLNNIYEAGINI 191
Query: 827 XXXXXXXLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTI 886
L ES + RA+++ LANL +P SVPIN LV IKGTP + +D ++FI+TI
Sbjct: 192 CSGGILGLGESIEDRAKMLLTLANLKEHPRSVPINRLVPIKGTPFENNIKVDNIDFIKTI 251
Query: 887 AVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGXXXXXXXXXXXXXXSKLLKK 946
AV RI MP S +R++AGRK+M E QA C AGANSIFYG LL K
Sbjct: 252 AVTRILMPKSYVRLAAGRKDMSEEMQALCLFAGANSIFYGEKLLTTPNSNCDDDKNLLSK 311
Query: 947 LG 948
LG
Sbjct: 312 LG 313
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q21W43 | BIOB_RHOFD | 2, ., 8, ., 1, ., 6 | 0.6518 | 0.3036 | 0.8395 | yes | N/A |
| Q0VMD0 | BIOB_ALCBS | 2, ., 8, ., 1, ., 6 | 0.5880 | 0.3119 | 0.7859 | yes | N/A |
| Q7VVF1 | BIOB_BORPE | 2, ., 8, ., 1, ., 6 | 0.6058 | 0.3181 | 0.9164 | yes | N/A |
| Q7WB85 | BIOB_BORPA | 2, ., 8, ., 1, ., 6 | 0.6071 | 0.3191 | 0.9194 | yes | N/A |
| Q2KWF1 | BIOB_BORA1 | 2, ., 8, ., 1, ., 6 | 0.5868 | 0.3160 | 0.9442 | yes | N/A |
| B4S0P9 | BIOB_ALTMD | 2, ., 8, ., 1, ., 6 | 0.6143 | 0.3170 | 0.8181 | yes | N/A |
| Q12D73 | BIOB2_POLSJ | 2, ., 8, ., 1, ., 6 | 0.6245 | 0.3202 | 0.9008 | yes | N/A |
| Q7WMQ3 | BIOB_BORBR | 2, ., 8, ., 1, ., 6 | 0.6071 | 0.3191 | 0.9194 | yes | N/A |
| B2AGA0 | BIOB_CUPTR | 2, ., 8, ., 1, ., 6 | 0.6339 | 0.3170 | 0.9 | yes | N/A |
| Q3J9D5 | BIOB_NITOC | 2, ., 8, ., 1, ., 6 | 0.6006 | 0.3139 | 0.8782 | yes | N/A |
| A1VUJ4 | BIOB_POLNA | 2, ., 8, ., 1, ., 6 | 0.6217 | 0.3150 | 0.8811 | yes | N/A |
| A2SGQ6 | BIOB_METPP | 2, ., 8, ., 1, ., 6 | 0.625 | 0.3150 | 0.9212 | yes | N/A |
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.6.1 | LOW CONFIDENCE prediction! |
| 4th Layer | 2.8.1.6 | 0.737 |
| 3rd Layer | 2.8.1 | 0.691 |
| 3rd Layer | 5.4.99 | 0.691 |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 965 | |||
| PRK06943 | 453 | PRK06943, PRK06943, adenosylmethionine--8-amino-7- | 0.0 | |
| TIGR00508 | 417 | TIGR00508, bioA, adenosylmethionine-8-amino-7-oxon | 0.0 | |
| PRK07030 | 466 | PRK07030, PRK07030, adenosylmethionine--8-amino-7- | 1e-172 | |
| PRK05964 | 423 | PRK05964, PRK05964, adenosylmethionine--8-amino-7- | 1e-170 | |
| COG0161 | 449 | COG0161, BioA, Adenosylmethionine-8-amino-7-oxonon | 1e-158 | |
| TIGR00433 | 296 | TIGR00433, bioB, biotin synthase | 1e-153 | |
| PRK15108 | 345 | PRK15108, PRK15108, biotin synthase; Provisional | 1e-150 | |
| PLN02389 | 379 | PLN02389, PLN02389, biotin synthase | 1e-135 | |
| COG0502 | 335 | COG0502, BioB, Biotin synthase and related enzymes | 1e-131 | |
| PRK08742 | 472 | PRK08742, PRK08742, adenosylmethionine--8-amino-7- | 1e-130 | |
| cd00610 | 413 | cd00610, OAT_like, Acetyl ornithine aminotransfera | 1e-120 | |
| PRK06916 | 460 | PRK06916, PRK06916, adenosylmethionine--8-amino-7- | 1e-114 | |
| pfam00202 | 338 | pfam00202, Aminotran_3, Aminotransferase class-III | 1e-100 | |
| PRK07986 | 428 | PRK07986, PRK07986, adenosylmethionine--8-amino-7- | 1e-98 | |
| PRK06173 | 429 | PRK06173, PRK06173, adenosylmethionine--8-amino-7- | 9e-89 | |
| PRK06256 | 336 | PRK06256, PRK06256, biotin synthase; Validated | 3e-84 | |
| PRK05630 | 422 | PRK05630, PRK05630, adenosylmethionine--8-amino-7- | 5e-79 | |
| COG0564 | 289 | COG0564, RluA, Pseudouridylate synthases, 23S RNA- | 1e-78 | |
| COG0160 | 447 | COG0160, GabT, 4-aminobutyrate aminotransferase an | 3e-77 | |
| TIGR00005 | 299 | TIGR00005, rluA_subfam, pseudouridine synthase, Rl | 2e-74 | |
| COG4992 | 404 | COG4992, ArgD, Ornithine/acetylornithine aminotran | 6e-73 | |
| PRK07481 | 449 | PRK07481, PRK07481, hypothetical protein; Provisio | 8e-72 | |
| PRK02627 | 396 | PRK02627, PRK02627, acetylornithine aminotransfera | 2e-70 | |
| PRK11180 | 325 | PRK11180, rluD, 23S rRNA pseudouridine synthase D; | 1e-66 | |
| cd02869 | 185 | cd02869, PseudoU_synth_RluCD_like, Pseudouridine s | 5e-65 | |
| TIGR00707 | 379 | TIGR00707, argD, transaminase, acetylornithine/suc | 9e-65 | |
| PRK07483 | 443 | PRK07483, PRK07483, hypothetical protein; Provisio | 2e-64 | |
| PRK06917 | 447 | PRK06917, PRK06917, hypothetical protein; Provisio | 1e-63 | |
| PRK01278 | 389 | PRK01278, argD, acetylornithine transaminase prote | 6e-63 | |
| PRK06105 | 460 | PRK06105, PRK06105, aminotransferase; Provisional | 1e-60 | |
| PRK07480 | 456 | PRK07480, PRK07480, putative aminotransferase; Val | 3e-58 | |
| PRK13360 | 442 | PRK13360, PRK13360, omega amino acid--pyruvate tra | 1e-57 | |
| PRK07678 | 451 | PRK07678, PRK07678, aminotransferase; Validated | 1e-55 | |
| PRK08117 | 433 | PRK08117, PRK08117, 4-aminobutyrate aminotransfera | 1e-55 | |
| PRK07036 | 466 | PRK07036, PRK07036, hypothetical protein; Provisio | 8e-55 | |
| PRK09221 | 445 | PRK09221, PRK09221, beta alanine--pyruvate transam | 1e-54 | |
| PRK06541 | 460 | PRK06541, PRK06541, hypothetical protein; Provisio | 3e-54 | |
| PRK11522 | 459 | PRK11522, PRK11522, putrescine--2-oxoglutarate ami | 5e-53 | |
| PRK08508 | 279 | PRK08508, PRK08508, biotin synthase; Provisional | 1e-52 | |
| PTZ00125 | 400 | PTZ00125, PTZ00125, ornithine aminotransferase-lik | 1e-51 | |
| TIGR03372 | 442 | TIGR03372, putres_am_tran, putrescine aminotransfe | 2e-51 | |
| PRK03244 | 398 | PRK03244, argD, acetylornithine aminotransferase; | 3e-51 | |
| PRK05769 | 441 | PRK05769, PRK05769, 4-aminobutyrate aminotransfera | 6e-51 | |
| PRK06082 | 459 | PRK06082, PRK06082, 4-aminobutyrate aminotransfera | 1e-49 | |
| PLN02760 | 504 | PLN02760, PLN02760, 4-aminobutyrate:pyruvate trans | 1e-49 | |
| PRK12403 | 460 | PRK12403, PRK12403, putative aminotransferase; Pro | 3e-46 | |
| PRK06062 | 451 | PRK06062, PRK06062, hypothetical protein; Provisio | 7e-45 | |
| PRK05965 | 459 | PRK05965, PRK05965, hypothetical protein; Provisio | 2e-44 | |
| TIGR01885 | 401 | TIGR01885, Orn_aminotrans, ornithine aminotransfer | 3e-43 | |
| PLN00144 | 382 | PLN00144, PLN00144, acetylornithine transaminase | 4e-43 | |
| PRK08360 | 443 | PRK08360, PRK08360, 4-aminobutyrate aminotransfera | 4e-41 | |
| TIGR00709 | 442 | TIGR00709, dat, 2,4-diaminobutyrate 4-transaminase | 2e-40 | |
| TIGR02407 | 412 | TIGR02407, ectoine_ectB, diaminobutyrate--2-oxoglu | 5e-40 | |
| PRK05093 | 403 | PRK05093, argD, bifunctional N-succinyldiaminopime | 1e-38 | |
| PRK04013 | 364 | PRK04013, argD, acetylornithine/acetyl-lysine amin | 1e-38 | |
| TIGR00700 | 420 | TIGR00700, GABAtrnsam, 4-aminobutyrate aminotransf | 2e-38 | |
| TIGR03246 | 397 | TIGR03246, arg_catab_astC, succinylornithine trans | 3e-38 | |
| PLN02624 | 474 | PLN02624, PLN02624, ornithine-delta-aminotransfera | 2e-37 | |
| PRK02936 | 377 | PRK02936, argD, acetylornithine aminotransferase; | 1e-36 | |
| PRK08088 | 425 | PRK08088, PRK08088, 4-aminobutyrate aminotransfera | 1e-36 | |
| PLN02974 | 817 | PLN02974, PLN02974, adenosylmethionine-8-amino-7-o | 2e-36 | |
| PRK04073 | 396 | PRK04073, rocD, ornithine--oxo-acid transaminase; | 2e-35 | |
| PRK12381 | 406 | PRK12381, PRK12381, bifunctional succinylornithine | 2e-35 | |
| PRK09264 | 425 | PRK09264, PRK09264, diaminobutyrate--2-oxoglutarat | 3e-35 | |
| PRK07482 | 461 | PRK07482, PRK07482, hypothetical protein; Provisio | 2e-34 | |
| smart00876 | 94 | smart00876, BATS, Biotin and Thiamin Synthesis ass | 2e-34 | |
| PRK08593 | 445 | PRK08593, PRK08593, 4-aminobutyrate aminotransfera | 3e-34 | |
| PRK03715 | 395 | PRK03715, argD, acetylornithine transaminase prote | 8e-34 | |
| cd02557 | 213 | cd02557, PseudoU_synth_ScRIB2, Pseudouridine synth | 3e-33 | |
| PRK06918 | 451 | PRK06918, PRK06918, 4-aminobutyrate aminotransfera | 3e-33 | |
| PRK04260 | 375 | PRK04260, PRK04260, acetylornithine aminotransfera | 3e-33 | |
| PRK06931 | 459 | PRK06931, PRK06931, diaminobutyrate--2-oxoglutarat | 4e-32 | |
| PRK07495 | 425 | PRK07495, PRK07495, 4-aminobutyrate aminotransfera | 1e-31 | |
| pfam00849 | 149 | pfam00849, PseudoU_synth_2, RNA pseudouridylate sy | 4e-31 | |
| PRK06058 | 443 | PRK06058, PRK06058, 4-aminobutyrate aminotransfera | 9e-31 | |
| PRK00854 | 401 | PRK00854, rocD, ornithine--oxo-acid transaminase; | 9e-31 | |
| PRK06777 | 421 | PRK06777, PRK06777, 4-aminobutyrate aminotransfera | 1e-30 | |
| PRK09792 | 421 | PRK09792, PRK09792, 4-aminobutyrate transaminase; | 4e-30 | |
| cd02563 | 223 | cd02563, PseudoU_synth_TruC, tRNA pseudouridine is | 8e-30 | |
| PRK11025 | 317 | PRK11025, PRK11025, 23S rRNA pseudouridylate synth | 1e-29 | |
| pfam06968 | 93 | pfam06968, BATS, Biotin and Thiamin Synthesis asso | 3e-29 | |
| PRK05639 | 457 | PRK05639, PRK05639, 4-aminobutyrate aminotransfera | 1e-28 | |
| PRK04612 | 408 | PRK04612, argD, acetylornithine transaminase prote | 1e-28 | |
| PRK06938 | 464 | PRK06938, PRK06938, diaminobutyrate--2-oxoglutarat | 3e-27 | |
| smart00729 | 216 | smart00729, Elp3, Elongator protein 3, MiaB family | 5e-27 | |
| cd02550 | 154 | cd02550, PseudoU_synth_Rsu_Rlu_like, Pseudouridine | 6e-26 | |
| PRK10158 | 219 | PRK10158, PRK10158, 23S rRNA/tRNA pseudouridine sy | 3e-25 | |
| PRK11112 | 257 | PRK11112, PRK11112, tRNA pseudouridine synthase C; | 6e-23 | |
| TIGR01621 | 217 | TIGR01621, RluA-like, pseudouridine synthase Rlu f | 1e-21 | |
| COG0001 | 432 | COG0001, HemL, Glutamate-1-semialdehyde aminotrans | 1e-19 | |
| PRK06148 | 1013 | PRK06148, PRK06148, hypothetical protein; Provisio | 7e-19 | |
| PRK08297 | 443 | PRK08297, PRK08297, L-lysine aminotransferase; Pro | 3e-18 | |
| TIGR03251 | 431 | TIGR03251, LAT_fam, L-lysine 6-transaminase | 3e-18 | |
| TIGR00713 | 423 | TIGR00713, hemL, glutamate-1-semialdehyde-2,1-amin | 5e-18 | |
| PRK06149 | 972 | PRK06149, PRK06149, hypothetical protein; Provisio | 6e-18 | |
| TIGR00699 | 464 | TIGR00699, GABAtrns_euk, 4-aminobutyrate aminotran | 4e-16 | |
| pfam04055 | 165 | pfam04055, Radical_SAM, Radical SAM superfamily | 3e-15 | |
| PLN02482 | 474 | PLN02482, PLN02482, glutamate-1-semialdehyde 2,1-a | 5e-14 | |
| PRK00062 | 426 | PRK00062, PRK00062, glutamate-1-semialdehyde amino | 9e-14 | |
| cd01335 | 204 | cd01335, Radical_SAM, Radical SAM superfamily | 2e-12 | |
| TIGR03957 | 317 | TIGR03957, rSAM_HmdB, 5,10-methenyltetrahydrometha | 1e-10 | |
| PRK00615 | 433 | PRK00615, PRK00615, glutamate-1-semialdehyde amino | 1e-09 | |
| cd02558 | 246 | cd02558, PSRA_1, Pseudouridine synthase, a subgrou | 6e-09 | |
| PRK12389 | 428 | PRK12389, PRK12389, glutamate-1-semialdehyde amino | 8e-09 | |
| TIGR03550 | 322 | TIGR03550, F420_cofG, 7,8-didemethyl-8-hydroxy-5-d | 4e-08 | |
| COG1060 | 370 | COG1060, ThiH, Thiamine biosynthesis enzyme ThiH a | 8e-08 | |
| TIGR03910 | 347 | TIGR03910, pyrrolys_PylB, pyrrolysine biosynthesis | 4e-07 | |
| PRK07046 | 453 | PRK07046, PRK07046, aminotransferase; Validated | 6e-06 | |
| PRK07094 | 323 | PRK07094, PRK07094, biotin synthase; Provisional | 1e-05 | |
| PRK06245 | 336 | PRK06245, cofG, FO synthase subunit 1; Reviewed | 3e-05 | |
| PRK12928 | 290 | PRK12928, PRK12928, lipoyl synthase; Provisional | 2e-04 | |
| COG1187 | 248 | COG1187, RsuA, 16S rRNA uridine-516 pseudouridylat | 4e-04 | |
| COG0320 | 306 | COG0320, LipA, Lipoate synthase [Coenzyme metaboli | 0.001 | |
| TIGR00510 | 302 | TIGR00510, lipA, lipoate synthase | 0.003 |
| >gnl|CDD|235894 PRK06943, PRK06943, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 618 bits (1596), Expect = 0.0
Identities = 220/398 (55%), Positives = 293/398 (73%), Gaps = 1/398 (0%)
Query: 248 LITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLS 307
L G+RYLDAISSWWVNLFGH+N IN ALK+QL+ LEH ML+ TH+P I+L+E+L+
Sbjct: 48 LYDRDGRRYLDAISSWWVNLFGHANPRINAALKDQLDTLEHAMLAGCTHEPAIELAERLA 107
Query: 308 SLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVT 367
+LT LGH F+ SDGASAVE+ALKMSFH W N+G +K++F+CL N YHGET+GAL VT
Sbjct: 108 ALTGGTLGHAFFASDGASAVEIALKMSFHAWRNRGRGDKREFVCLANGYHGETIGALGVT 167
Query: 368 NIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIII 427
++ FK+ Y L+ +++ +PD+R G +A ++A A+ D+ L + KIAA+I+
Sbjct: 168 DVALFKDAYDPLIRHAHVVASPDARGARPGETAADVAARALADVRRLFAERAGKIAALIV 227
Query: 428 EPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL 487
EPLVQCA GM M+D YL+ +R +C+ Y +HLIADEIAVGCGRTG FFACE A +WPDFL
Sbjct: 228 EPLVQCAAGMAMHDPSYLRGLRALCDRYGVHLIADEIAVGCGRTGTFFACEQAGVWPDFL 287
Query: 488 CLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK 547
CLSKGI+GGYLPLSLV++ D I+ + Y + FLHSHSY+GNPLAC AALATL++F +
Sbjct: 288 CLSKGISGGYLPLSLVLSRDAIFAAFYDDDVTRGFLHSHSYTGNPLACRAALATLDLFAE 347
Query: 548 DNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAA 607
D++L R ++ ++ AL L HP++ + RQ+G I+AFDV + D + TFS++FF AA
Sbjct: 348 DDVLARNARKSARLRAALAPLAAHPQVRHLRQRGTIFAFDVAL-DGDAARTFSRRFFEAA 406
Query: 608 LKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTF 645
L+ ELLLRPIG TVYLMPPY+L+ +EI + T
Sbjct: 407 LERELLLRPIGTTVYLMPPYVLDDDEIAWLAERTRATL 444
|
Length = 453 |
| >gnl|CDD|233000 TIGR00508, bioA, adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Score = 552 bits (1426), Expect = 0.0
Identities = 171/401 (42%), Positives = 252/401 (62%), Gaps = 6/401 (1%)
Query: 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEK 305
L G+ Y+D ISSWWVN+ GH++ IN A+K QL+KLEHVM LTH+P I+L+E+
Sbjct: 23 VYLYDEDGREYIDGISSWWVNIHGHNHPEINAAIKEQLDKLEHVMFGGLTHEPAIELAER 82
Query: 306 LSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALA 365
L +T L F+ G+ AVEVALKM+ YW N+G K +F+ +N YHG+T GA++
Sbjct: 83 LVEITPEGLEKVFFSDSGSVAVEVALKMALQYWQNQGRPGKTRFLAFRNGYHGDTFGAMS 142
Query: 366 VTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAI 425
V ++ F ++ LL + I P ++ + LE LL+++ ++IAA
Sbjct: 143 VGDVGGFHALFEPLLFEVVFIPAPPCYR---CWDPDDCEAECLAALEALLEEHADEIAAF 199
Query: 426 IIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPD 485
I+EPLVQ AGGM Y YL+ +RE+C+ Y + LIADEIA G GRTGK FACEHA + PD
Sbjct: 200 IVEPLVQGAGGMRFYPPEYLRKLRELCDEYGVLLIADEIATGFGRTGKLFACEHAGVTPD 259
Query: 486 FLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIF 545
LCLSKG+TGGYLPL+ +TTD+IY + Y + F+H H+Y+GNPLAC AALA+L++
Sbjct: 260 ILCLSKGLTGGYLPLAATLTTDEIYEAFYSDDEGKAFMHGHTYTGNPLACAAALASLDLL 319
Query: 546 NKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFV 605
+++ L+++++ ++ L L HP + + R G I A +++ + K
Sbjct: 320 EEEDWLEQVARIEAQLRAGLAPLRDHPGVADVRVLGAIGAVELVRDVEPY---IGAKIQQ 376
Query: 606 AALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFN 646
L+ +LLRP+GN +YLMPPYI+ E++ +T+AI + +
Sbjct: 377 FFLERGVLLRPLGNVIYLMPPYIITDEELEKLTAAIKEAID 417
|
All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 417 |
| >gnl|CDD|180800 PRK07030, PRK07030, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 510 bits (1315), Expect = e-172
Identities = 196/395 (49%), Positives = 269/395 (68%), Gaps = 10/395 (2%)
Query: 251 FSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLT 310
F GKRYLDA+SSWWVN+FGH+N IN+ +K+Q+++LEHV+L+ +H+PVI+LSE+L +T
Sbjct: 44 FEGKRYLDAVSSWWVNVFGHANPRINQRIKDQVDQLEHVILAGFSHEPVIELSERLVKIT 103
Query: 311 QYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQ 370
L CFY +G+SA+EVALKMSFHYW N+G KK+F+ L NSYHGETL A++V ++
Sbjct: 104 PPGLSRCFYADNGSSAIEVALKMSFHYWRNRGKPRKKRFVTLTNSYHGETLAAMSVGDVA 163
Query: 371 SFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPL 430
F E Y LL T + +PD +G S E +R +E L ++H++IAA+I+EPL
Sbjct: 164 LFTETYKPLLLDTIKVPSPDCYLRPEGMSWEEHSRRMFAHMEQTLAEHHDEIAAVIVEPL 223
Query: 431 VQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS 490
+Q AGGM MY +YLKL+RE C+ Y +HLI DEIAVG GRTG FACE A I PDFLCLS
Sbjct: 224 IQGAGGMRMYHPVYLKLLREACDRYGVHLIHDEIAVGFGRTGTMFACEQAGIRPDFLCLS 283
Query: 491 KGITGGYLPLSLVMTTDKIYNSIY--YKNNINIFLHSHSYSGNPLACCAALATLEIFNKD 548
K +TGGYLPL+ V+TTD +Y + Y Y + FLHSHSY+GNPLAC AALATL+IF +D
Sbjct: 284 KALTGGYLPLAAVLTTDTVYQAFYDDY-PTLRAFLHSHSYTGNPLACAAALATLDIFEQD 342
Query: 549 NILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETF------SKK 602
N+++ +++ +A L HP + RQ GMI A + +++D + K
Sbjct: 343 NVIENNRALARRMAEATAHLADHPHVAEVRQTGMILAIE-MVQDKASKTPYPWQERRGLK 401
Query: 603 FFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHM 637
+ AL+ LLRP+G+ VY +PPY++ +I +
Sbjct: 402 VYQHALERGALLRPLGSVVYFLPPYVITPEQIDFL 436
|
Length = 466 |
| >gnl|CDD|235656 PRK05964, PRK05964, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 501 bits (1293), Expect = e-170
Identities = 160/403 (39%), Positives = 242/403 (60%), Gaps = 13/403 (3%)
Query: 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEK 305
+ L G+ +DAISSWWV GH++ YI++A++ QL++L+HV+ + TH+P +L+++
Sbjct: 34 AYLYLADGRELIDAISSWWVATHGHNHPYIDQAIREQLDRLDHVIFAGFTHEPAERLAQR 93
Query: 306 LSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALA 365
L +LT L H F+ G+ AVEVALKM+ YW N+G + +F+ L+ YHG+T+G ++
Sbjct: 94 LVALTPGGLDHVFFSDSGSVAVEVALKMALQYWRNRGEPGRSRFLSLRGGYHGDTIGTMS 153
Query: 366 VTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAI 425
V + +YT LL + P + + + LE LL+K+ +IAA
Sbjct: 154 VGDRGGMHALYTPLLFEQVTAPFP----------PDGYEQATLDALEALLEKHAGEIAAF 203
Query: 426 IIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPD 485
I+EPLVQ AGGM+ YD YL +R IC+ + + LI DEIA G GRTG FACE A + PD
Sbjct: 204 IVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLLIFDEIATGFGRTGTLFACEQAGVSPD 263
Query: 486 FLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIF 545
+CLSKG+TGGYLPL+ + T +I+ + Y + F+HS SY+ NPLAC AA A+L++F
Sbjct: 264 IMCLSKGLTGGYLPLAATLCTAEIFEAFYSDDRAKAFMHSPSYTANPLACAAANASLDLF 323
Query: 546 NKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFV 605
+ +L+R++ + + L P + + R G I A ++ E+
Sbjct: 324 EDEPVLERVAALSAGLAEGLEPFRDLPGVADVRVLGAIGAVELDRPVLERD---GPALRA 380
Query: 606 AALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNEL 648
AL+ +LLRP+GNT+YLMPPYI+ E+ +T AI + +EL
Sbjct: 381 FALERGVLLRPLGNTIYLMPPYIITAEELDRITDAIVEVADEL 423
|
Length = 423 |
| >gnl|CDD|223239 COG0161, BioA, Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 471 bits (1215), Expect = e-158
Identities = 174/410 (42%), Positives = 245/410 (59%), Gaps = 12/410 (2%)
Query: 248 LITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLS 307
L G+RYLD +S W GH I +A+K QL+KL HVM TH+P I+L+EKL+
Sbjct: 38 LTDIDGRRYLDGMSGLWCVNHGHGRPEIAEAIKKQLDKLPHVMFGGFTHEPAIELAEKLA 97
Query: 308 SLT-QYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAV 366
L + L H F+ G+ AVE ALKM+ YW +G +KKFI +N YHG+TLGA++V
Sbjct: 98 ELAPEGGLDHVFFTDSGSEAVETALKMALQYWRARGQPQRKKFISRRNGYHGDTLGAMSV 157
Query: 367 TNIQ-SFKEIYTSLLNKTYIITTPDS-RNINKGNSANEIARCAIFDLEILLKKNH-NKIA 423
Y LL + + P + R G E A A +LE L+ ++ IA
Sbjct: 158 GGPVALRHAFYDPLLPEVLHLPAPYAYRRGFFGEGDEEFAEAAD-ELEALILEHGPETIA 216
Query: 424 AIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIW 483
A I+EP+V AGGM++ YLK VREIC+ Y I LIADE+A G GRTGK FACEHA I
Sbjct: 217 AFIVEPVVGGAGGMLVPPPGYLKRVREICDKYGILLIADEVATGFGRTGKMFACEHAGIV 276
Query: 484 PDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLE 543
PD LCL+KG+TGGYLPLS V+T+D+IY + + F+H H+YSGNPLAC AALA L+
Sbjct: 277 PDILCLAKGLTGGYLPLSAVLTSDRIYEAF-SDGDAGAFMHGHTYSGNPLACAAALANLD 335
Query: 544 IFNKDNILQRISQDMKKITKALTSLIT-HPKIINFRQKGMIWAFDVIIEDPEQIETFSK- 601
I ++++L+R+++ + L + + HP + + R G+I A + ++ D F
Sbjct: 336 ILEEEDLLERVAEIGAYLQAGLQAALADHPLVGDVRGLGLIGAIE-LVADKATKTPFEAR 394
Query: 602 ---KFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNEL 648
+ AAL+ LL+RP+G+ +YLMPP I+ + EI + A+ + +E
Sbjct: 395 VGARVRAAALERGLLIRPLGDVIYLMPPLIITREEIDELVDALREALDET 444
|
Length = 449 |
| >gnl|CDD|232973 TIGR00433, bioB, biotin synthase | Back alignment and domain information |
|---|
Score = 454 bits (1170), Expect = e-153
Identities = 144/297 (48%), Positives = 196/297 (65%), Gaps = 5/297 (1%)
Query: 653 NLFNLPFNDLLFRAQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHYNTEITAT 712
L + P DLL AQ++ R +F N+++L +++ K+GGC EDC YC QS HY T I
Sbjct: 2 ELPDEPLLDLLAAAQRIRRHFF-GNKVDLCSIINAKSGGCPEDCKYCAQSAHYKTGIEKY 60
Query: 713 KILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETCLTLG 771
+LS+E V+ AA+KAK+ GA+RFCM + R DR+ + + I E+K+ GLE C +LG
Sbjct: 61 PLLSVEEVLEAAKKAKAAGASRFCMVTSGRGPSDREFEKVLEAIREIKEETGLEVCASLG 120
Query: 772 MLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGI 831
+L+E QA RLK G+D YNHNL+TSP Y +I +T Y++RL TLK R G+++C GGI
Sbjct: 121 LLSEEQAQRLKDAGVDRYNHNLETSPSYYPNICTTHTYDDRLETLKRARKAGLSVCSGGI 180
Query: 832 IGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARI 891
IG+ E+ + R EL F LA L+ +SVPIN LV I GTPL + LDP E +RTIA+ R
Sbjct: 181 IGMGETMEDRIELAFALAELD--VDSVPINFLVPIPGTPLEDAPPLDPEECLRTIALFRF 238
Query: 892 TMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLLKKLG 948
MP + IR++ GR+ M QA CFLAGANSIF GD LTT + +D ++L+ LG
Sbjct: 239 IMPDAEIRLAGGRELMLRELQALCFLAGANSIFTGD-YLTTAGREAEEDLEMLEDLG 294
|
Catalyzes the last step of the biotin biosynthesis pathway. All members of the seed alignment are in the immediate gene neighborhood of a bioA gene [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 296 |
| >gnl|CDD|185063 PRK15108, PRK15108, biotin synthase; Provisional | Back alignment and domain information |
|---|
Score = 448 bits (1153), Expect = e-150
Identities = 177/317 (55%), Positives = 237/317 (74%)
Query: 648 LDEVINLFNLPFNDLLFRAQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHYNT 707
L +V LF P +LLF AQ+VHR++FD +++++ LLSIKTG C EDC YCPQS+ Y T
Sbjct: 9 LSQVTELFEKPLLELLFEAQQVHRQHFDPRQVQVSTLLSIKTGACPEDCKYCPQSSRYKT 68
Query: 708 EITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETC 767
+ A +++ +E V+ +A+KAK+ G+TRFCMGAAW+ +RD+ +E M+ VK +GLETC
Sbjct: 69 GLEAERLMEVEQVLESARKAKAAGSTRFCMGAAWKNPHERDMPYLEQMVQGVKAMGLETC 128
Query: 768 LTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINIC 827
+TLG L+E+QA RL GLDYYNHNLDTSP+ YG+II+TR Y+ RL+TL+ VR+ GI +C
Sbjct: 129 MTLGTLSESQAQRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVC 188
Query: 828 CGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIA 887
GGI+GL E+ RA L+ QLANL PESVPIN LV++KGTPL + +D +FIRTIA
Sbjct: 189 SGGIVGLGETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAFDFIRTIA 248
Query: 888 VARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLLKKL 947
VARI MPTS +R+SAGR++M E TQA CF+AGANSIFYG KLLTT N + + D +L +KL
Sbjct: 249 VARIMMPTSYVRLSAGREQMNEQTQAMCFMAGANSIFYGCKLLTTPNPEEDKDLQLFRKL 308
Query: 948 GINTRNIKIKMKNNIKQ 964
G+N + + +N +Q
Sbjct: 309 GLNPQQTAVLAGDNEQQ 325
|
Length = 345 |
| >gnl|CDD|215219 PLN02389, PLN02389, biotin synthase | Back alignment and domain information |
|---|
Score = 410 bits (1056), Expect = e-135
Identities = 152/306 (49%), Positives = 207/306 (67%), Gaps = 2/306 (0%)
Query: 649 DEVINLFNLPFNDLLFRAQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHYNTE 708
DE+ +++ P DLLF +VHR D E++ LLSIKTGGC+EDC YCPQS+ Y+T
Sbjct: 50 DEIKEVYDSPLLDLLFHGAQVHRHAHDPREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTG 109
Query: 709 ITATKILSIESVITAAQKAKSDGATRFCMGAAWREL--KDRDLDNIENMICEVKKIGLET 766
+ A K++S + V+ AA++AK G+TRFCMGAAWR+ + + + I + E++ +G+E
Sbjct: 110 VKAQKLMSKDDVLEAAKRAKEAGSTRFCMGAAWRDTVGRKTNFNQILEYVKEIRGMGMEV 169
Query: 767 CLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINI 826
C TLGML + QA +LK+ GL YNHNLDTS + Y ++I+TR Y++RL TL+ VR GI++
Sbjct: 170 CCTLGMLEKEQAAQLKEAGLTAYNHNLDTSREYYPNVITTRSYDDRLETLEAVREAGISV 229
Query: 827 CCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTI 886
C GGIIGL E+ + R L+ LA L +PESVPIN LV +KGTPL ++ E +R I
Sbjct: 230 CSGGIIGLGEAEEDRVGLLHTLATLPEHPESVPINALVAVKGTPLEDQKPVEIWEMVRMI 289
Query: 887 AVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLLKK 946
A ARI MP + +R+SAGR QA CFLAGANSIF GDKLLTT N + D + K+
Sbjct: 290 ATARIVMPKAMVRLSAGRVRFSMAEQALCFLAGANSIFTGDKLLTTPNNDFDADQAMFKE 349
Query: 947 LGINTR 952
LG+ +
Sbjct: 350 LGLIPK 355
|
Length = 379 |
| >gnl|CDD|223576 COG0502, BioB, Biotin synthase and related enzymes [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 398 bits (1024), Expect = e-131
Identities = 168/305 (55%), Positives = 213/305 (69%), Gaps = 4/305 (1%)
Query: 647 ELDEVINLFNLPFND-LLFRAQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHY 705
LDE + L +LP D LLF A + HR +FD NE++L+ L+SIKTG C EDC YC QS Y
Sbjct: 15 TLDEALALLDLPDEDELLFEAAQKHRLHFDGNEVQLSTLISIKTGCCPEDCAYCSQSARY 74
Query: 706 NTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI-GL 764
T + A K++ +E ++ AA+KAK+ GATRFCMGAA R RD++ + I VK+ GL
Sbjct: 75 KTGVKARKLMEVEEILEAAKKAKAAGATRFCMGAAGRG-PGRDMEEVVEAIKAVKEELGL 133
Query: 765 ETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGI 824
E C +LGML E QA +L G+D YNHNL+TSP+ Y +II+TR YE+RLNTL+NVR GI
Sbjct: 134 EVCASLGMLTEEQAEKLADAGVDRYNHNLETSPEFYENIITTRTYEDRLNTLENVREAGI 193
Query: 825 NICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIR 884
+C GGI+GL E+ + RAEL+ +LANL P+SVPIN L I GTPL + LDP EF++
Sbjct: 194 EVCSGGIVGLGETVEDRAELLLELANLPT-PDSVPINFLNPIPGTPLENAKPLDPFEFLK 252
Query: 885 TIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLL 944
TIAVARI MP S IR+SAGR+ M QA F+AGANSIF GDK LTT + D +LL
Sbjct: 253 TIAVARIIMPKSMIRLSAGRETMLPELQALAFMAGANSIFVGDKYLTTPGPDEDKDLELL 312
Query: 945 KKLGI 949
K LG+
Sbjct: 313 KDLGL 317
|
Length = 335 |
| >gnl|CDD|236336 PRK08742, PRK08742, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 400 bits (1028), Expect = e-130
Identities = 170/398 (42%), Positives = 253/398 (63%), Gaps = 12/398 (3%)
Query: 248 LITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLS 307
L+ G+RYLDA+SSWW NLFGH+ I A+ Q +LE VML+ TH+P ++L+E+L
Sbjct: 58 LVGHDGRRYLDAVSSWWTNLFGHAEPRIGAAIAAQAGELEQVMLAGFTHEPAVQLAEQLL 117
Query: 308 SLTQYK-----LGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLG 362
++ + L FY +G++ VEVALKM+FHY++N+G + +FI L+N YHGET+G
Sbjct: 118 AIAPRQDGRAPLSKVFYADNGSAGVEVALKMAFHYFHNRGEHRRTRFIALENGYHGETIG 177
Query: 363 ALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKI 422
ALAV +I ++ +Y LL ++ +PD+ G SA + A A L+ L +++ +I
Sbjct: 178 ALAVGDIPLYRRVYAPLLLESLFAPSPDAYLAEPGQSAEDYALQAADALQALFEQSPGEI 237
Query: 423 AAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEI 482
A+I+EP +QCAGGM M+ YL+ RE+C+ + LIADEIA G GRTG FACE A +
Sbjct: 238 CALILEPRLQCAGGMRMHHPAYLRRARELCDAHGAFLIADEIATGFGRTGTLFACEQAGV 297
Query: 483 WPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATL 542
PD LCLSKG+TGG+LPLS V+ T ++Y++ + FLHSHSY+GNPLAC AALATL
Sbjct: 298 MPDLLCLSKGLTGGFLPLSAVLATQQLYDAFLDDSRERAFLHSHSYTGNPLACAAALATL 357
Query: 543 EIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSK- 601
+IF D+++ R ++T+ + HP + + RQ GM+ AF+ + + F
Sbjct: 358 DIFADDDVIARNQPTAARMTQLAAQIGEHPHVADVRQAGMVVAFE-LTRGGNKRTPFPPA 416
Query: 602 -----KFFVAALKNELLLRPIGNTVYLMPPYILNKNEI 634
+ AAL ++LRP+G+ +Y MPPY +++ ++
Sbjct: 417 ARVGLHAYRAALARGVVLRPLGDVLYWMPPYCVDEAQL 454
|
Length = 472 |
| >gnl|CDD|99735 cd00610, OAT_like, Acetyl ornithine aminotransferase family | Back alignment and domain information |
|---|
Score = 373 bits (959), Expect = e-120
Identities = 136/405 (33%), Positives = 217/405 (53%), Gaps = 24/405 (5%)
Query: 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEK 305
+ L G RYLD +S V GH++ + +ALK QL KL H L ++P ++L+E
Sbjct: 28 AYLYDVDGNRYLDFLSGIGVLNLGHNHPEVVEALKEQLAKLTHFSLGFFYNEPAVELAEL 87
Query: 306 LSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALA 365
L +LT L F+ + G AVE ALK++ Y +KK I + +YHG TLGAL+
Sbjct: 88 LLALTPEGLDKVFFVNSGTEAVEAALKLARAYT------GRKKIISFEGAYHGRTLGALS 141
Query: 366 VTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAI 425
+T + ++ + LL + P R A+++ LE L+++ ++AA+
Sbjct: 142 LTGSKKYRGGFGPLLPGVLHVPYPY-RYRPPAELADDLE-----ALEEALEEHPEEVAAV 195
Query: 426 IIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPD 485
I+EP +Q GG+I+ YLK +RE+C + I LIADE+ G GRTGK FA EH + PD
Sbjct: 196 IVEP-IQGEGGVIVPPPGYLKALRELCRKHGILLIADEVQTGFGRTGKMFAFEHFGVEPD 254
Query: 486 FLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIF 545
+ L KG+ GG LPL V+ ++I ++ LH ++ GNPLAC AALA LE+
Sbjct: 255 IVTLGKGLGGG-LPLGAVLGREEIMDAFPAGP----GLHGGTFGGNPLACAAALAVLEVL 309
Query: 546 NKDNILQRISQDMKKITKALTSLITHPKII-NFRQKGMIWAFDVIIEDPEQIETFSK--- 601
++ +L+ ++ + + + L L ++ + R +G++ + +++D +
Sbjct: 310 EEEGLLENAAELGEYLRERLRELAEKHPLVGDVRGRGLMIGIE-LVKDRATKPPDKELAA 368
Query: 602 KFFVAALKNELLLRPIG-NTVYLMPPYILNKNEIQHMTSAIFQTF 645
K AAL+ LLLRP G N + L+PP I+ + EI A+ +
Sbjct: 369 KIIKAALERGLLLRPSGGNVIRLLPPLIITEEEIDEGLDALDEAL 413
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation. Length = 413 |
| >gnl|CDD|180746 PRK06916, PRK06916, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 359 bits (923), Expect = e-114
Identities = 164/412 (39%), Positives = 250/412 (60%), Gaps = 10/412 (2%)
Query: 247 KLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKL 306
KL +G Y D +SS W+N+ GH +++A++ QLNK+ H L L + P I L+EKL
Sbjct: 49 KLYDVNGNEYYDGVSSIWLNVHGHQVPELDEAIREQLNKIAHSTLLGLANVPSILLAEKL 108
Query: 307 SSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAV 366
+ L FY GA+AVE+A+KM+F YW NKG K++F+ L+N+YHG+T+GA++V
Sbjct: 109 IEVVPEGLKKVFYSDSGATAVEIAIKMAFQYWQNKGKPKKQRFVTLKNAYHGDTIGAVSV 168
Query: 367 TNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAII 426
I F ++Y+SLL + + P + GN EI + + +LE LLK+ H +IAAII
Sbjct: 169 GAIDLFHQVYSSLLFEAIKMPYPYTYRSPYGNDKAEIVKKHLEELEELLKEKHEEIAAII 228
Query: 427 IEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDF 486
+EPLVQ AGGMI YLK +R +C YN+ I DE+A G GRTGK FACEH + PD
Sbjct: 229 VEPLVQGAGGMITMPKGYLKGLRNLCTKYNVLFITDEVATGFGRTGKMFACEHENVTPDI 288
Query: 487 LCLSKGITGGYLPLSLVMTTDKIYNSIY--YKNNINIFLHSHSYSGNPLACCAALATLEI 544
+ KG+TGGYLP+++ +TTD+IYN+ Y Y F H HSY+GNPL C ALA LE+
Sbjct: 289 MTAGKGLTGGYLPIAITVTTDEIYNAFYGDY-EEQKTFFHGHSYTGNPLGCAVALANLEL 347
Query: 545 FNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETF--SKK 602
+ K N+++++++ + + L L + + RQ G++ + ++++ E E F +++
Sbjct: 348 YEKTNLIEQVARKTEYVATQLEDLFALKHVGDIRQLGLMVGIE-LVKNKETKEPFEWTER 406
Query: 603 FFVAALKNE----LLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNELDE 650
V K +L RP+GNT+ MPP +E+ M +++ +++ E
Sbjct: 407 VGVQVCKRSRELGMLTRPLGNTIVFMPPLASTIDELDEMLRILYKAISDVTE 458
|
Length = 460 |
| >gnl|CDD|201078 pfam00202, Aminotran_3, Aminotransferase class-III | Back alignment and domain information |
|---|
Score = 316 bits (812), Expect = e-100
Identities = 124/335 (37%), Positives = 182/335 (54%), Gaps = 14/335 (4%)
Query: 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQY 312
G+RYLD +S V GH + I +A+K Q +KL H T +P ++L+EKL+ LT
Sbjct: 15 GRRYLDFLSGIAVVNLGHCHPKIVQAVKEQADKLTHTSFRAFTTEPALQLAEKLAQLTPG 74
Query: 313 KLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSF 372
L F+ + G+ A E A+K++ Y KG K K I +HG TLGAL+VT +
Sbjct: 75 GLDRVFFMNSGSEANETAIKLARQYAKKKGATGKTKIIAFSGGFHGRTLGALSVTGSSGY 134
Query: 373 KEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQ 432
K+ + L Y + PD +A E CA L ++ + + IAA+I+EP +Q
Sbjct: 135 KKGFGPSLPGVYFLPYPDLE------AAEEELACADEALRLIKAVHDDNIAAVIVEP-IQ 187
Query: 433 CAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKG 492
GG++ +L +REIC + + LIADE+ G GRTGK FACEH + PD + L+K
Sbjct: 188 GEGGVVPPPPGFLAGLREICKKHGVLLIADEVQTGFGRTGKLFACEHYGVTPDIMTLAKA 247
Query: 493 ITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQ 552
+TGG PLS V+ T +I + + H ++ GNPLAC AALA L+I +N+LQ
Sbjct: 248 LTGGL-PLSAVLATAEIMQAFH------PGSHGGTFGGNPLACAAALAVLDIIEDENLLQ 300
Query: 553 RISQDMKKITKALTSLITHPKIINFRQKGMIWAFD 587
+ + K L +L P I + R KG++ A +
Sbjct: 301 NAQEKGDYLRKGLLALQDKPVIGDVRGKGLMIAIE 335
|
Length = 338 |
| >gnl|CDD|181189 PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated | Back alignment and domain information |
|---|
Score = 316 bits (811), Expect = 1e-98
Identities = 145/395 (36%), Positives = 225/395 (56%), Gaps = 15/395 (3%)
Query: 248 LITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLS 307
LI G+R +D +SSWW + G+++ +N A+K+Q++ + HVM +TH P I+L KL
Sbjct: 37 LILADGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHPPAIELCRKLV 96
Query: 308 SLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVT 367
++T L F G+ AVEVA+KM+ YW KG +++F+ L++ YHG+T GA++V
Sbjct: 97 AMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKG-EPRQRFLTLRHGYHGDTFGAMSVC 155
Query: 368 NIQ-SFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAII 426
+ S +Y L + P SR + + + I L+ + ++IAA+I
Sbjct: 156 DPDNSMHSLYKGYLPENLFAPAPQSRFDGEWDERD------IAPFARLMAAHRHEIAAVI 209
Query: 427 IEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDF 486
+EP+VQ AGGM +Y +LK VR++C+ I LIADEIA G GRTGK FACEHA I PD
Sbjct: 210 LEPIVQGAGGMRIYHPEWLKRVRKLCDREGILLIADEIATGFGRTGKLFACEHAGIAPDI 269
Query: 487 LCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN 546
LCL K +TGG + LS +TT ++ +I F+H ++ GNPLAC A A+L +
Sbjct: 270 LCLGKALTGGTMTLSATLTTREVAETI-SNGEAGCFMHGPTFMGNPLACAVANASLSLLE 328
Query: 547 KDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVA 606
+ Q+++ ++ + L L P + + R G I V P + ++FFV
Sbjct: 329 SGDWQQQVAAIEAQLREELAPLRDAPMVADVRVLGAIGV--VETTRPVNMAAL-QRFFV- 384
Query: 607 ALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAI 641
+ + +RP G +YLMPPYI+ ++Q +T+A+
Sbjct: 385 --EQGVWIRPFGKLIYLMPPYIILPEQLQRLTAAV 417
|
Length = 428 |
| >gnl|CDD|180441 PRK06173, PRK06173, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 290 bits (743), Expect = 9e-89
Identities = 135/396 (34%), Positives = 220/396 (55%), Gaps = 14/396 (3%)
Query: 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQY 312
G+R +D +SSWW L G+++ +N A NQL K+ H+M TH+P ++L++KL +
Sbjct: 43 GRRLIDGMSSWWAALHGYNHPRLNAAATNQLAKMSHIMFGGFTHEPAVELAQKLLEILPP 102
Query: 313 KLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTN-IQS 371
L F+ G+ AVEVA+KM+ Y KG + + KF +++ YHG+T A++V + +
Sbjct: 103 SLNKIFFADSGSVAVEVAMKMALQYQQAKGEVQRTKFATIRSGYHGDTWHAMSVCDPVTG 162
Query: 372 FKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLV 431
++ L Y + P +I G N+ AI L+ LL++ ++IAA+I+EP+V
Sbjct: 163 MHGLFNHSLPVQYFLPQP---SIKFGEEWND---EAIEPLQDLLEQKGDEIAALILEPVV 216
Query: 432 QCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSK 491
Q AGGM Y YL RE+C+ Y + LI DEIA G GRTGK FA EHA + PD +C+ K
Sbjct: 217 QGAGGMYFYSPTYLVKARELCDQYGVLLIFDEIATGFGRTGKLFALEHAGVVPDIMCIGK 276
Query: 492 GITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNIL 551
+TGGYL LS +TT+ I +I F+H ++ NPLAC A ++ + +
Sbjct: 277 ALTGGYLTLSATITTEAIAQTI-CSGEAKCFMHGPTFMANPLACAIAAESIRLLLESPWQ 335
Query: 552 QRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNE 611
Q I + ++ + L + R G I + +++P + T +F +++
Sbjct: 336 QNIQRIEAQLKQELAPAAEFDSVAEVRVLGAIGVVE--MKEPVNMATLQPRF----VEHG 389
Query: 612 LLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNE 647
+ +RP G VY+MPP+I++ +E+ +TS + + +
Sbjct: 390 IWVRPFGKLVYIMPPFIISPDELSQLTSGLLRVLKQ 425
|
Length = 429 |
| >gnl|CDD|235755 PRK06256, PRK06256, biotin synthase; Validated | Back alignment and domain information |
|---|
Score = 274 bits (703), Expect = 3e-84
Identities = 112/304 (36%), Positives = 173/304 (56%), Gaps = 9/304 (2%)
Query: 649 DEVINLFNLP---FNDLLFRAQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHY 705
+E + L +P +LL A +V + + +++L +++ K+G C EDCGYC QS
Sbjct: 23 EEALALLEIPDDDLLELLAAAYEVRKHFCG-KKVKLNTIINAKSGLCPEDCGYCSQSAGS 81
Query: 706 NTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGL 764
+ + L IE +I AA++A +GA FC+ A+ R +++D + + +K+ L
Sbjct: 82 SAPVYRYAWLDIEELIEAAKEAIEEGAGTFCIVASGRGPSGKEVDQVVEAVKAIKEETDL 141
Query: 765 ETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGI 824
E C LG+L E QA RLK+ G+D YNHNL+TS + ++++T YE+R++T + V+ GI
Sbjct: 142 EICACLGLLTEEQAERLKEAGVDRYNHNLETSRSYFPNVVTTHTYEDRIDTCEMVKAAGI 201
Query: 825 NICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIR 884
C GGIIG+ ES + R E F L L+ +S+PIN L I GTPL L PLE ++
Sbjct: 202 EPCSGGIIGMGESLEDRVEHAFFLKELD--ADSIPINFLNPIPGTPLENHPELTPLECLK 259
Query: 885 TIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLL 944
TIA+ R+ P IR++ GR E+ + L GANS+ G+ L T T D ++
Sbjct: 260 TIAIFRLINPDKEIRIAGGR-EVNLRSLQPLGLGGANSVIVGNYLTTVGQPAT-ADLDMI 317
Query: 945 KKLG 948
+ LG
Sbjct: 318 EDLG 321
|
Length = 336 |
| >gnl|CDD|180174 PRK05630, PRK05630, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 263 bits (674), Expect = 5e-79
Identities = 136/395 (34%), Positives = 213/395 (53%), Gaps = 15/395 (3%)
Query: 248 LITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLS 307
L G +DA+SSWW GH + + A Q++ + HVM LTH+P IKL+ KL
Sbjct: 34 LTLEDGSTVIDAMSSWWSAAHGHGHPRLKAAAHKQIDTMSHVMFGGLTHEPAIKLTRKLL 93
Query: 308 SLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVT 367
+LT L H FY G+ +VEVA+KM+ Y +G + + + ++ YHG+T A++V
Sbjct: 94 NLTDNGLDHVFYSDSGSVSVEVAIKMALQYSKGQGHPERTRLLTWRSGYHGDTFAAMSVC 153
Query: 368 NIQS-FKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAII 426
+ + ++ L + P R G+S EI+ + LE+L+ +AAII
Sbjct: 154 DPEGGMHSLWKGTLPEQIFAPAPPVR----GSSPQEISE-YLRSLELLID---ETVAAII 205
Query: 427 IEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDF 486
IEP+VQ AGGM +D ++ VR +C+ ++I LIADEIA G GRTG+ FA A + PD
Sbjct: 206 IEPIVQGAGGMRFHDVALIEGVRTLCDKHDILLIADEIATGFGRTGELFATLAAGVTPDI 265
Query: 487 LCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN 546
+C+ K +TGG++ + + TDK+ I N +H ++ NPLAC A A+LEI
Sbjct: 266 MCVGKALTGGFMSFAATLCTDKVAQLISTPNGGGALMHGPTFMANPLACAVAHASLEIIE 325
Query: 547 KDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVA 606
+++ + ++ L+ L P + + R G I V +E P +E ++ A
Sbjct: 326 TGMWRKQVKRIEAELIAGLSPLAHLPGVADVRVLGAIGV--VEMEQPVDMEEATQ----A 379
Query: 607 ALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAI 641
A+ + + LRP G VY+MPPYI +I + +A+
Sbjct: 380 AVDHGVWLRPFGRLVYVMPPYITTSEQIAQICAAL 414
|
Length = 422 |
| >gnl|CDD|223638 COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 257 bits (659), Expect = 1e-78
Identities = 107/241 (44%), Positives = 145/241 (60%), Gaps = 8/241 (3%)
Query: 5 GYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNL 64
G + I P++ + I LDI+YED +++++NK AGLVVHP G+ GTL + L
Sbjct: 55 GDVVRIPLPEEPEEEKLVPED-IPLDILYEDEDLLVVNKPAGLVVHPGGGHHEGTLVNAL 113
Query: 65 LEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG-I 123
L V R GIVHRLDK++SGL++VAK+ ++ L Q K V++ YLA+V G +
Sbjct: 114 L--RHCQDGVERPGIVHRLDKDTSGLLLVAKNREAARELSEQFKQRKVKKTYLALVRGHL 171
Query: 124 PKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGR 183
P+ G I+A I R+P NR KM V K + KPA+T+YE L + +L+ +TGR
Sbjct: 172 PEDEGTIDAPIGRDPKNRKKMAVVKEGSGKPAITHYEVLE---RFGDNYTLVELKPETGR 228
Query: 184 THQIRVHMQWLGHGIVGDNLYG-KKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLP 242
THQIRVH+ LGH IVGD LYG K S RQALHAYKL HP +L++ LP
Sbjct: 229 THQIRVHLAHLGHPIVGDPLYGGKDKSAGAGLKRQALHAYKLSFTHPLTGEELEFEAPLP 288
Query: 243 D 243
+
Sbjct: 289 E 289
|
Length = 289 |
| >gnl|CDD|223238 COG0160, GabT, 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 259 bits (664), Expect = 3e-77
Identities = 130/420 (30%), Positives = 210/420 (50%), Gaps = 36/420 (8%)
Query: 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEK 305
+ L G YLD +S V GH++ + +A+K QL KL H +L ++P ++L+EK
Sbjct: 48 AYLYDVDGNEYLDFLSGIAVLNLGHNHPRVVEAVKRQLAKLNHTHTRDLYYEPYVELAEK 107
Query: 306 LSSLT-QYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGAL 364
L++L L F+G+ GA AVE A+K++ Y + I ++HG TLGAL
Sbjct: 108 LTALAPGSGLKKVFFGNSGAEAVEAAIKIARAY------TGRPGVIAFDGAFHGRTLGAL 161
Query: 365 AVTNIQSF-KEIYTSLLNKTYIITTPDS-RNINKGNSANEIARCA------IFDLEILLK 416
++T + K + L Y + P+ R +FDLE+
Sbjct: 162 SLTGSKPPYKAGFGPLPPGVYHVPYPNPYRCPFGIGGEECGDDALEYIERALFDLEV--- 218
Query: 417 KNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFA 476
++AAIIIEP +Q GG+I+ +LK +R++C + I LIADE+ G GRTGK FA
Sbjct: 219 -GPEEVAAIIIEP-IQGEGGIIVPPKGFLKALRKLCREHGILLIADEVQTGFGRTGKMFA 276
Query: 477 CEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACC 536
EH + PD + L+K + GG LPLS V+ +I + H ++ GNP+AC
Sbjct: 277 FEHFGVEPDIVTLAKSL-GGGLPLSAVVGRAEI-------MDWPPGGHGGTFGGNPVACA 328
Query: 537 AALATLEIFNKDNILQRISQDMKKITKALTSLIT-HPKIINFRQKGMIWAFDVIIEDPEQ 595
AALA L++ ++N+L+R ++ + + L L HP I + R G++ + +++D +
Sbjct: 329 AALAVLDVIEEENLLERAAELGEYLRDRLEELQEKHPLIGDVRGLGLMIGVE-LVKDRDT 387
Query: 596 IE---TFSKKFFVAALKNELLL---RPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNELD 649
E + K A + LLL P GN + ++PP ++ E+ + + E
Sbjct: 388 KEPDAELAAKIVARAFERGLLLLTCGPHGNVLRILPPLTISDEELDEGLDILEEALKEAL 447
|
Length = 447 |
| >gnl|CDD|161659 TIGR00005, rluA_subfam, pseudouridine synthase, RluA family | Back alignment and domain information |
|---|
Score = 246 bits (631), Expect = 2e-74
Identities = 105/231 (45%), Positives = 144/231 (62%), Gaps = 11/231 (4%)
Query: 26 VIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDK 85
I LDI++ED +II++NK +GLVVHP GN GT+ + LL P + V R GIVHRLD+
Sbjct: 69 DIPLDILFEDEDIIVINKPSGLVVHPGGGNPFGTVLNALLAHCPPIAGVERVGIVHRLDR 128
Query: 86 NSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPK-LNGMINAAIMRNPHNRIKM 144
++SGLMVVAK+ + L QLK V ++Y+A+V G G ++A + R P+NR M
Sbjct: 129 DTSGLMVVAKTPLALRELQRQLKNRTVTKEYVALVHGQFDSGGGTVDAPLGRVPNNRGLM 188
Query: 145 TVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLY 204
V + KPA+T++ L + SL+ C L+TGRTHQIRVH+Q+LGH + GD LY
Sbjct: 189 AVHPSSEGKPAVTHFRVLE----RFGNASLVECELETGRTHQIRVHLQYLGHPLAGDPLY 244
Query: 205 GKK------YSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
G K + L F+RQALHAY+LG IHP L++ LP D+ L+
Sbjct: 245 GNKPVPGNNLNGLLNFDRQALHAYELGFIHPATGEILEFEAPLPADLVLLL 295
|
In E. coli, RluD (SfhB) modifies uridine to pseudouridine at 23S RNA U1911, 1915, and 1917, RluC modifies 955, 2504 and 2580, and RluA modifies U746 and tRNA U32. An additional homolog from E. coli outside this family, TruC (SP|Q46918), modifies uracil-65 in transfer RNAs to pseudouridine [Protein synthesis, tRNA and rRNA base modification]. Length = 299 |
| >gnl|CDD|227325 COG4992, ArgD, Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 246 bits (630), Expect = 6e-73
Identities = 123/409 (30%), Positives = 202/409 (49%), Gaps = 45/409 (11%)
Query: 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNL-THKPVIKLSE 304
+ + G+ YLD + VN GH + + +ALK Q KL HV SNL ++P +L+E
Sbjct: 34 AYVWDQQGREYLDFAAGIAVNNLGHCHPALVEALKEQAEKLWHV--SNLFYNEPQAELAE 91
Query: 305 KLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGAL 364
KL L+ F+ + GA A E ALK++ Y + K K I +NS+HG TLGAL
Sbjct: 92 KLVELSP-FADRVFFCNSGAEANEAALKLARKYTGDP---EKSKIIAFENSFHGRTLGAL 147
Query: 365 AVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAA 424
+ T +++ + LL P R++ D+E L AA
Sbjct: 148 SATGQPKYRKGFGPLL--------PGFRHVPFN------------DIEALEAAIDEDTAA 187
Query: 425 IIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWP 484
+I+EP +Q GG+I +LK +RE+C+ + LI DE+ G GRTGK FA EH + P
Sbjct: 188 VIVEP-IQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTGLGRTGKLFAYEHYGVEP 246
Query: 485 DFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEI 544
D L L+K + GG+ P+ ++ T++I + H ++ GNPLAC ALA LE+
Sbjct: 247 DILTLAKALGGGF-PIGAMLATEEI------ASAFTPGDHGSTFGGNPLACAVALAVLEV 299
Query: 545 FNKDNILQRISQDMKKITKALTSLIT-HPKIINFRQKGMIWAFDVIIEDPEQIETFSKKF 603
++ +L+ + + + + + L L +P + R +G++ + +++P + +
Sbjct: 300 LLEEGLLENVREKGEYLLQRLRELKRRYPLVKEVRGRGLMIGIE--LKEPYRA-----RD 352
Query: 604 FVAALKNE--LLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNELDE 650
V AL+ E L+L N + +PP ++ + EI A+ +
Sbjct: 353 IVRALREEGVLVLPAGPNVIRFLPPLVITEEEIDEALDALERALAAASA 401
|
Length = 404 |
| >gnl|CDD|168967 PRK07481, PRK07481, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 244 bits (625), Expect = 8e-72
Identities = 131/413 (31%), Positives = 216/413 (52%), Gaps = 20/413 (4%)
Query: 253 GKRYLDAISSWW-VNLFGHSNSYINKALKNQLNKLE-HVMLSNLTHKPVIKLSEKLSSLT 310
GK+ LD + W VN+ GH+ + +A+ QL++LE + TH I+LS +L +
Sbjct: 41 GKKLLDGVGGLWNVNV-GHNREEVKEAIVRQLDELEYYSTFDGTTHPRAIELSYELIDMF 99
Query: 311 QYK-LGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNI 369
+ + F+ S G+ +VE ALK++ YW +G + KFI L+ YHG G +V
Sbjct: 100 APEGMRRVFFSSGGSDSVETALKLARQYWKVRGQPERTKFISLKQGYHGTHFGGASVNGN 159
Query: 370 QSFKEIYTSLLNKTYIITTPDS-RNINKGNSANEIAR-CA-IFDLEILLKKNHNKIAAII 426
F+ Y LL + + TP RN E+AR CA + + EI + IAA I
Sbjct: 160 TVFRRNYEPLLPGCFHVETPWLYRNPFTEQDPEELARICARLLEREIAFQGPDT-IAAFI 218
Query: 427 IEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDF 486
EP VQ AGG+I+ + + LVRE+C+ + I LIADE+ G GRTG +F + PD
Sbjct: 219 AEP-VQGAGGVIVPPANFWPLVREVCDRHGILLIADEVVTGFGRTGSWFGSRGWGVKPDI 277
Query: 487 LCLSKGITGGYLPLSLVMTTDKIYNSIYY-KNNINIFLHSHSYSGNPLACCAALATLEIF 545
+CL+KGIT GY+PL M +I ++ + +H ++YSG+P+AC AALATL+I
Sbjct: 278 MCLAKGITSGYVPLGATMVNARIADAFEANADFGGAIMHGYTYSGHPVACAAALATLDIV 337
Query: 546 NKDNILQRISQDMKKITKALTSLIT-HPKIINFRQKGMIWAFDVIIE-------DPEQIE 597
++++ ++ + + L L + + R KG++ A D++ + DP +
Sbjct: 338 VREDLPANAAKRGAYLLEGLQPLKERFELVGDVRGKGLMLALDLVADKATREPIDPSK-- 395
Query: 598 TFSKKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNELDE 650
++ A +N +L+RP G + L PP ++ + ++ + A+ + +
Sbjct: 396 GYANAVADVARENGVLVRPSGTKIILSPPLVIQREDVDRIVDALDAGLSAVPF 448
|
Length = 449 |
| >gnl|CDD|235056 PRK02627, PRK02627, acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 239 bits (612), Expect = 2e-70
Identities = 125/406 (30%), Positives = 206/406 (50%), Gaps = 44/406 (10%)
Query: 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTH-KPVIKLSE 304
++L GK YLD ++ VN GH + + +A++ Q KL H SNL + +P +L+E
Sbjct: 31 ARLWDDDGKEYLDFLAGIAVNNLGHCHPKLVEAIQEQAAKLIHT--SNLYYIEPQEELAE 88
Query: 305 KLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGAL 364
KL L+ + F+ + GA A E A+K++ Y + KG K + I +NS+HG TL L
Sbjct: 89 KLVELS--GMDKVFFCNSGAEANEAAIKLARKYGHKKGI-EKPEIITAENSFHGRTLATL 145
Query: 365 AVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAA 424
+ T ++E + L+ + D+E L +K AA
Sbjct: 146 SATGQPKYQEGFEPLV--------EGFIYVPFN------------DIEALKAAITDKTAA 185
Query: 425 IIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWP 484
+++EP +Q GG+ D YL+ +RE+C+ I LI DE+ G GRTGK FA +H I P
Sbjct: 186 VMLEP-IQGEGGVNPADKEYLQALRELCDENGILLILDEVQTGMGRTGKLFAYQHYGIEP 244
Query: 485 DFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEI 544
D + L+KG+ GG +P+ V+ +K+ + + H ++ GNPLAC AALA +EI
Sbjct: 245 DIMTLAKGLGGG-VPIGAVLAKEKVADVFTPGD------HGSTFGGNPLACAAALAVIEI 297
Query: 545 FNKDNILQRISQDMKKITKALTSLI-THPKIINFRQKGMIWAFDVIIEDPEQIETFSKKF 603
++ +L+ ++ + + L L+ +P I R G++ + IE ++ + +
Sbjct: 298 IEEEGLLENAAEVGEYLRAKLRELLEKYPGIKEVRGLGLM----IGIE----LDRPAAEI 349
Query: 604 FVAALKNELLLRPIG-NTVYLMPPYILNKNEIQHMTSAIFQTFNEL 648
AL+ LL+ G N + L+PP I++K EI + + EL
Sbjct: 350 VKKALEKGLLINVTGDNVLRLLPPLIISKEEIDEAVDRLEEVLKEL 395
|
Length = 396 |
| >gnl|CDD|183020 PRK11180, rluD, 23S rRNA pseudouridine synthase D; Provisional | Back alignment and domain information |
|---|
Score = 226 bits (578), Expect = 1e-66
Identities = 102/237 (43%), Positives = 142/237 (59%), Gaps = 23/237 (9%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I LDI+YED++I+++NK LVVHP GN GT+ + LL YP + +VPRAGIVHRLDK+
Sbjct: 82 IPLDIVYEDDDILVINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHRLDKD 141
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAK++ + LV L+ + R+Y A+ G G ++ I R+P R M V
Sbjct: 142 TTGLMVVAKTVPAQTRLVEALQKREITREYEAVAIGHMTAGGTVDEPISRHPTKRTHMAV 201
Query: 147 SKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNL 203
KPA+T+Y E + H + +R L+TGRTHQIRVHM + H +VGD +
Sbjct: 202 HP--MGKPAVTHYRIMEHF------RVH-TRLRLRLETGRTHQIRVHMAHITHPLVGDQV 252
Query: 204 YG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
YG K S+ I F+RQALHA L L HP ++++W LP D+ +LI
Sbjct: 253 YGGRPRPPKGASEEFISTLRKFDRQALHATMLRLYHPITGIEMEWHAPLPQDMVELI 309
|
Length = 325 |
| >gnl|CDD|211346 cd02869, PseudoU_synth_RluCD_like, Pseudouridine synthase, RsuA/RluD family | Back alignment and domain information |
|---|
Score = 216 bits (552), Expect = 5e-65
Identities = 79/189 (41%), Positives = 115/189 (60%), Gaps = 4/189 (2%)
Query: 38 IIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSI 97
++++NK AGL VHP G+L+GTL + LL++ L R G+VHRLDK++SGL++VAK+
Sbjct: 1 LLVVNKPAGLPVHPGPGHLTGTLVNALLKLLLLLGEEFRPGLVHRLDKDTSGLLLVAKNK 60
Query: 98 KSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALT 157
K+ L Q K V++ YLA+V G P + A + + + V + + KPA+T
Sbjct: 61 KAAAKLSKQFKERKVKKTYLALVDGKPPEDEGTIDAPLGRKKRKKRARVVVSEDGKPAIT 120
Query: 158 YYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGKKYSKSLIFNRQ 217
+Y+ L +++L+ L+TGRTHQIRVH+ +GH IVGD YG K S S R
Sbjct: 121 HYKVLERF----GNVTLVELQLETGRTHQIRVHLASIGHPIVGDPKYGGKASDSPGLKRL 176
Query: 218 ALHAYKLGL 226
ALHAY+L
Sbjct: 177 ALHAYRLSF 185
|
This group is comprised of eukaryotic, bacterial and archeal proteins similar to eight site specific Escherichia coli pseudouridine synthases: RsuA, RluA, RluB, RluC, RluD, RluE, RluF and TruA. Pseudouridine synthases catalyze the isomerization of specific uridines in a n RNA molecule to pseudouridines (5-ribosyluracil, psi) requiring no cofactors. E. coli RluC for example makes psi955, 2504 and 2580 in 23S RNA. Some psi sites such as psi1917 in 23S RNA made by RluD are universally conserved. Other psi sites occur in a more restricted fashion, for example psi2819 in 21S mitochondrial ribosomal RNA made by S. cerevisiae Pus5p is only found in mitochondrial large subunit rRNAs from some other species and in gram negative bacteria. The E. coli counterpart of this psi residue is psi2580 in 23S rRNA. psi2604in 23S RNA made by RluF has only been detected in E.coli. Length = 185 |
| >gnl|CDD|233098 TIGR00707, argD, transaminase, acetylornithine/succinylornithine family | Back alignment and domain information |
|---|
Score = 223 bits (569), Expect = 9e-65
Identities = 129/391 (32%), Positives = 197/391 (50%), Gaps = 43/391 (10%)
Query: 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNL-THKPVIKLSEKLSSLTQ 311
GK YLD ++ VN GH++ + +ALK QL KL HV SNL +P +L+EKL +
Sbjct: 26 GKEYLDFVAGIAVNSLGHAHPKLVEALKEQLEKLVHV--SNLYYTEPQEELAEKLVEHS- 82
Query: 312 YKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQS 371
F+ + GA A E ALK++ Y +KG KKK I +NS+HG T+GAL+ T
Sbjct: 83 -GADRVFFCNSGAEANEAALKLARKYTGDKG-KEKKKIIAFENSFHGRTMGALSATGQPK 140
Query: 372 FKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLV 431
+++ + L+ P D+E L K ++ AA+I+EP +
Sbjct: 141 YQKGFEPLV--------PGFSYAPYN------------DIESLKKAIDDETAAVIVEP-I 179
Query: 432 QCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSK 491
Q GG+ + +LK +REIC + + LI DE+ G GRTGKFFA EH I PD + L+K
Sbjct: 180 QGEGGVNPASAEFLKALREICKDKDALLIFDEVQTGIGRTGKFFAYEHYGIEPDIITLAK 239
Query: 492 GITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNIL 551
G+ GG +P+ + +++ + + H ++ GNPLAC AALA LE+ K+ +L
Sbjct: 240 GLGGG-VPIGATLAKEEVAEAFTPGD------HGSTFGGNPLACAAALAVLEVIEKERLL 292
Query: 552 QRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNE 611
+ + + + L L + R KG++ + +E K AL+
Sbjct: 293 ENVKEKGDYFKERLEELGKNYPNKEVRGKGLMLGIE--------LEAPCKDIVKKALEKG 344
Query: 612 LLLRPIG-NTVYLMPPYILNKNEIQHMTSAI 641
LL+ G + +PP I+ K EI SA+
Sbjct: 345 LLVNCAGPKVLRFLPPLIITKEEIDEAVSAL 375
|
This family of proteins, for which ornithine aminotransferases form an outgroup, consists mostly of proteins designated acetylornithine aminotransferase. However, the two very closely related members from E. coli are assigned different enzymatic activities. One is acetylornithine aminotransferase (EC 2.6.1.11), ArgD, an enzyme of arginine biosynthesis, while another is succinylornithine aminotransferase, an enzyme of the arginine succinyltransferase pathway, an ammonia-generating pathway of arginine catabolism (See MEDLINE:98361920). Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097). Length = 379 |
| >gnl|CDD|236027 PRK07483, PRK07483, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 224 bits (572), Expect = 2e-64
Identities = 125/406 (30%), Positives = 205/406 (50%), Gaps = 22/406 (5%)
Query: 248 LITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLS 307
LI +GKRYLDA V+ GHS+ + A+ Q+++L + S T +P L+++L
Sbjct: 24 LIDATGKRYLDASGGAAVSCLGHSHPRVIAAIHAQIDRLAYAHTSFFTTEPAEALADRLV 83
Query: 308 SLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVT 367
+ L H ++ S G+ AVE ALK++ Y+ G ++ FI + SYHG TLGALA+
Sbjct: 84 AAAPAGLEHVYFVSGGSEAVEAALKLARQYFVEIGQPQRRHFIARRQSYHGNTLGALAIG 143
Query: 368 NIQSFKEIYTSLLNKTYIITTP--DSRNINKGNSANEIARCAIFDLEI-LLKKNHNKIAA 424
+E + LL + + ++ P R G S + +LE +L+ + +AA
Sbjct: 144 GNAWRREPFAPLLIEAHHVS-PCYAYREQRAGESDEAYGQRLADELEAKILELGPDTVAA 202
Query: 425 IIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWP 484
+ E +V G + Y K +RE+C+ Y + LI DE+ G GRTG FACE + P
Sbjct: 203 FVAETVVGATAGAVPPVPGYFKRIREVCDRYGVLLILDEVMCGMGRTGTLFACEEDGVAP 262
Query: 485 DFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEI 544
D + ++KG+ GY P+ V+ +D+IY++I + F H H+Y G+ AC AALA +
Sbjct: 263 DLVTIAKGLGAGYQPIGAVLASDRIYDAI--ADGSGFFQHGHTYLGHATACAAALAVQRV 320
Query: 545 FNKDNILQRISQDMKKITKALTS-LITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKF 603
+D +L + +++ L L HP + + R +G+ + ++ D F
Sbjct: 321 IAEDGLLANVRARGEQLRARLRERLGQHPHVGDIRGRGLFVGVE-LVADRATKAPFDPAL 379
Query: 604 FVAA-LKNE-----LLLRPIGNT--------VYLMPPYILNKNEIQ 635
+ A +K E L++ P+G T V L PP+I+ +I
Sbjct: 380 KLHARIKREAMARGLMVYPMGGTIDGVRGDHVLLAPPFIITAAQID 425
|
Length = 443 |
| >gnl|CDD|235884 PRK06917, PRK06917, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 222 bits (567), Expect = 1e-63
Identities = 124/436 (28%), Positives = 207/436 (47%), Gaps = 33/436 (7%)
Query: 252 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQ 311
+G +Y D S GH I A+K Q ++ V S T +P KL++KLS L+
Sbjct: 29 NGNKYFDGSSGAVTAGIGHGVKEIADAIKEQAEEVSFVYRSQFTSEPAEKLAKKLSDLSP 88
Query: 312 YKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQS 371
L F+ + G+ A E A+K++ ++ +G K K + SYHG T+GAL+++
Sbjct: 89 GDLNWSFFVNSGSEANETAMKIAIQHFQERGIQGKHKILSRWMSYHGITMGALSMSGHPL 148
Query: 372 FKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKN-HNKIAAIIIEPL 430
++ + SLL I+ P +LE +++ IAA I EP+
Sbjct: 149 RRQRFVSLLEDYPTISAPYCYRCPVQKVYPTCQLACATELETAIERIGAEHIAAFIAEPI 208
Query: 431 VQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS 490
+ AG ++ Y K+++EIC++Y+I IADE+ G GRTG FA EH + PD + L
Sbjct: 209 IGAAGAAVVPPKGYYKVIKEICDHYDILFIADEVMTGLGRTGAMFAMEHWGVEPDIMTLG 268
Query: 491 KGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNI 550
KG+ GY P++ + +D++ I + H+ S NPL+ ALA LE K N+
Sbjct: 269 KGLGAGYTPIAATVVSDRVMEPI--LRGSRSIMSGHTLSANPLSAATALAVLEYMEKHNL 326
Query: 551 LQRISQDMKKITKALTSLITHPKII-NFRQKGMIWAFDVIIEDPEQIETFSKKFFVAAL- 608
++ ++ + + K L + II + R KG++ + + D + + FSK VA+
Sbjct: 327 PEKAAEKGEYLIKGLQKVQQQSTIIGDVRGKGLLIGVE-FVADKKTKQPFSKSQAVASEL 385
Query: 609 -----KNELLLRPI--------GNTVYLMPPYILNKNEIQHMTSAIFQTFNELDEVINLF 655
KN LLL P G+ V + PP + T++ELDE++++F
Sbjct: 386 ISVAAKNGLLLYPAVAGQDGKEGDAVIIAPPMTI--------------TYSELDELLSIF 431
Query: 656 NLPFNDLLFRAQKVHR 671
+++ +
Sbjct: 432 AKSVEEMMQKGGHSIA 447
|
Length = 447 |
| >gnl|CDD|179270 PRK01278, argD, acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Score = 218 bits (557), Expect = 6e-63
Identities = 121/392 (30%), Positives = 186/392 (47%), Gaps = 46/392 (11%)
Query: 248 LITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPV-IKLSEKL 306
LI G+RYLD S VN GH++ ++ +ALK Q KL HV SNL P +L+E+L
Sbjct: 25 LIDEDGERYLDFASGIAVNSLGHAHPHLVEALKEQAEKLWHV--SNLYRIPEQERLAERL 82
Query: 307 SSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAV 366
+ F+ + GA AVE A+K + Y Y KG + + I + ++HG TL +A
Sbjct: 83 VENSFADK--VFFTNSGAEAVECAIKTARRYHYGKGHPERYRIITFEGAFHGRTLATIAA 140
Query: 367 TNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAII 426
+ + E + L+ P + G D+E L AAI+
Sbjct: 141 GGQEKYLEGFGPLV--------PGFDQVPFG------------DIEALKAAITPNTAAIL 180
Query: 427 IEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDF 486
IEP +Q GG+ +LK +R++C+ + LI DE+ G GRTGK FA E A + PD
Sbjct: 181 IEP-IQGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQCGMGRTGKLFAHEWAGVTPDI 239
Query: 487 LCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN 546
+ ++KGI GG+ PL + T++ + H +Y GNPLA A L++
Sbjct: 240 MAVAKGIGGGF-PLGACLATEEAAKG------MTPGTHGSTYGGNPLAMAVGNAVLDVIL 292
Query: 547 KDNILQRISQDMKKITKALTSLI-THPKII-NFRQKGMIWAFDVIIEDPEQIETFSKKFF 604
L + + + + L L+ P +I R KG++ ++ + +
Sbjct: 293 APGFLDNVQRMGLYLKQKLEGLVDRFPDVIEEVRGKGLLLGLKCVVPNRD---------L 343
Query: 605 VAALKNELLL-RPIG-NTVYLMPPYILNKNEI 634
V AL++E LL G N V L+PP I+ + EI
Sbjct: 344 VQALRDEGLLTVGAGDNVVRLLPPLIITEEEI 375
|
Length = 389 |
| >gnl|CDD|180401 PRK06105, PRK06105, aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 213 bits (545), Expect = 1e-60
Identities = 125/421 (29%), Positives = 206/421 (48%), Gaps = 29/421 (6%)
Query: 252 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLE--HVMLSNLTHKPVIKLSEKLSSL 309
+GKRY++ ++ W G S + +A Q+ KL H S+ +H PVI L+EKL ++
Sbjct: 46 AGKRYIEGMAGLWSVALGFSEQRLVEAAARQMKKLPFYH-TFSHKSHGPVIDLAEKLVAM 104
Query: 310 TQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVT-- 367
+ F+ + G+ A + +K+ ++Y G KKK I Q YHG T+ + ++T
Sbjct: 105 APVPMSKVFFTNSGSEANDTVVKLVWYYNNALGRPEKKKIISRQRGYHGVTIASASLTGL 164
Query: 368 --NIQSFKEIYTSLLNKTYIITT--PDS-RNINKGNSANEIA-RCAIFDLEIL-LKKNHN 420
N +SF L I+ T P R G S A R A +LE L L + +
Sbjct: 165 PNNHRSFD------LPLDRILHTGCPHYYRFGLPGESEEAFATRLAN-ELEALILAEGPD 217
Query: 421 KIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHA 480
IAA I EP V AGG+I+ Y + ++ + Y+I L+ADE+ G GRTG F CE
Sbjct: 218 TIAAFIGEP-VMGAGGVIVPPKTYWEKIQAVLRKYDILLVADEVICGFGRTGNMFGCETF 276
Query: 481 EIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNN-INIFLHSHSYSGNPLACCAAL 539
I PD L +SK ++ Y PLS V+ +K+Y+ I ++ I F H + SG+P+A AL
Sbjct: 277 GIKPDILVMSKQLSSSYQPLSAVLMNEKVYDPIADESGKIGTFGHGFTASGHPVAAAVAL 336
Query: 540 ATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETF 599
L I + +++ ++ ++ L +L HP + R G+I A + ++ D F
Sbjct: 337 ENLAIIEERDLVGNAAERGARLQARLRALADHPLVGEVRGVGLIAAVE-LVADKATKTPF 395
Query: 600 SK------KFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNEL-DEVI 652
+ AA ++ ++ R +G+T+ PP I+ ++ M + +++ V
Sbjct: 396 EPPGKVGARANAAAHEHGVISRAMGDTLAFCPPLIITAAQVDEMVDRFGRALDDVAAWVA 455
Query: 653 N 653
Sbjct: 456 A 456
|
Length = 460 |
| >gnl|CDD|180994 PRK07480, PRK07480, putative aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 207 bits (528), Expect = 3e-58
Identities = 119/411 (28%), Positives = 194/411 (47%), Gaps = 47/411 (11%)
Query: 253 GKRYLDAISSWW-VNLFGHSNSYINKALKNQLNKLEHVMLSNL----THKPVIKLSEKLS 307
G + LD ++ W VN+ G+ + A Q+ +L + N TH P I+L+ KL+
Sbjct: 49 GNKILDGMAGLWCVNV-GYGRKELADAAARQMRELPYY---NTFFKTTHPPAIELAAKLA 104
Query: 308 SLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVT 367
+ H F+ + G+ A + L+M HYW KG KK I +N YHG T+
Sbjct: 105 EVAPPGFNHVFFTNSGSEANDTVLRMVRHYWALKGKPQKKVIISRKNGYHGSTVAG---- 160
Query: 368 NIQSFKEIYTSLLNKTYI-----ITTPDSRNIN--------KGNSANEIARCAIFDLEI- 413
SL Y+ + P +I+ + E A LE
Sbjct: 161 ---------ASLGGMKYMHEQGDLPIPGIVHIDQPYWFGEGGDMTPEEFGLAAARQLEAK 211
Query: 414 LLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK 473
+L+ + +AA I EP +Q AGG+I+ + Y ++ IC Y+I L+ADE+ G GRTG+
Sbjct: 212 ILELGADNVAAFIGEP-IQGAGGVIIPPATYWPEIQRICRKYDILLVADEVICGFGRTGE 270
Query: 474 FFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPL 533
+F +H I PD + ++KG+T GY+P+ V D++ + + F H +YSG+P+
Sbjct: 271 WFGSQHFGIKPDLMTIAKGLTSGYIPMGAVGVGDRVAEVLIEEG--GEFNHGFTYSGHPV 328
Query: 534 ACCAALATLEIFNKDNILQRISQDMKK-ITKALTSLITHPKIINFRQKGMIWAFDVIIED 592
A ALA L I + I++R+ D + K L L HP + R G++ A +++D
Sbjct: 329 AAAVALANLRILRDEGIVERVRDDTGPYLQKRLRELADHPLVGEVRGVGLVGAI-ELVKD 387
Query: 593 PEQIETFSKKFFVAAL------KNELLLRPIGNTVYLMPPYILNKNEIQHM 637
E F V + N L++R +G+ + + PP ++ EI +
Sbjct: 388 KATRERFEAGGGVGTICRDHCFANGLIMRAVGDRMIISPPLVITHAEIDEL 438
|
Length = 456 |
| >gnl|CDD|183999 PRK13360, PRK13360, omega amino acid--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 204 bits (521), Expect = 1e-57
Identities = 111/416 (26%), Positives = 209/416 (50%), Gaps = 27/416 (6%)
Query: 248 LITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLS 307
T G+R LD + W GH I +A++ Q +L++ + H +L+ +++
Sbjct: 40 YTTHDGRRVLDGTAGLWCVNAGHGRPEIVEAVRAQAGELDYAPAFQMGHPKAFELANRIA 99
Query: 308 SLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVT 367
+ L H F+ + G+ +V+ ALK++ Y +G ++ + I + YHG G ++V
Sbjct: 100 EIAPGGLNHVFFTNSGSESVDTALKIALAYHRARGEGSRTRLIGRERGYHGVGFGGISVG 159
Query: 368 NIQSFKEIYTSLLNKTYIITTPDSRNINK-----------GNSANEIARCAIFDLEILLK 416
I ++ + +LL + P + ++ + A+E+ R ++
Sbjct: 160 GIVPNRKAFGALL--PGVDHLPHTLDLARNAFSKGQPEHGAELADELER-------LVTL 210
Query: 417 KNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFA 476
+ + IAA+I+EP V + G+++ YL+ +REIC+ + I LI DE+ G GR G FA
Sbjct: 211 HDASTIAAVIVEP-VAGSTGVLIPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAPFA 269
Query: 477 CEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINI-FLHSHSYSGNPLAC 535
++ + PD L +KG+T G +P+ V + +I+++ I F H ++YSG+PLAC
Sbjct: 270 AQYFGVTPDLLTCAKGLTNGAIPMGAVFVSSEIHDAFMQGPEAGIEFFHGYTYSGHPLAC 329
Query: 536 CAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQ 595
AALATL+++ ++ +L R ++ AL SL P +I+ R G++ A ++ P
Sbjct: 330 AAALATLDLYEREGLLTRAARLAPYWEDALHSLRDAPHVIDIRNLGLVGAVEL---APRD 386
Query: 596 IETFSKKF--FVAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNELD 649
+ + + F+ + L++R G+ + L PP I+ + +I + + Q E
Sbjct: 387 GKPGKRAYEVFLKCFEKGLMIRYTGDILALSPPLIIEEAQIDELFDILAQALKETI 442
|
Length = 442 |
| >gnl|CDD|181078 PRK07678, PRK07678, aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 199 bits (509), Expect = 1e-55
Identities = 129/417 (30%), Positives = 202/417 (48%), Gaps = 31/417 (7%)
Query: 253 GKRYLDAISSWW-VNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQ 311
G RYLD +S W VN+ G+ + +A QL L + L+ +H+P IKL+EKL+
Sbjct: 46 GNRYLDGMSGLWCVNV-GYGRKELAEAAYEQLKTLSYFPLTQ-SHEPAIKLAEKLNEW-- 101
Query: 312 YKLGH---CFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTN 368
LG F+ + G+ A E A K++ Y KG ++ KFI +YHG ++GALA T
Sbjct: 102 --LGGEYVIFFSNSGSEANETAFKIARQYHAQKGEPHRYKFISRYRAYHGNSMGALAATG 159
Query: 369 IQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIA-RCAIFDLEILLKKNHNKIAAIII 427
K Y L + PD + S + C ++ + IAA+I+
Sbjct: 160 QAQRKYKYEPLAPGFLHVPPPDCYRMPGIESEDIYDLECVKEIDRVMTWELSETIAAVIM 219
Query: 428 EPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL 487
EP++ GG++M Y+K V+EIC + LI+DE+ G GRTGK F + + PD +
Sbjct: 220 EPIIT-GGGVLMPPQDYMKAVKEICQKHGALLISDEVICGFGRTGKAFGFMNYGVKPDII 278
Query: 488 CLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK 547
++KGIT YLPLS +IY + K F H +++ GNP AC AL LEI
Sbjct: 279 TMAKGITSAYLPLSATAVKKEIYEAFKGKGEYEHFRHVNTFGGNPAACALALKNLEIMEN 338
Query: 548 DNILQRISQDMKKITKAL-TSLITHPKIINFRQKGMIWAF----DVIIEDPEQIETFSKK 602
+N+++R +Q + + + L L HP + + R KG++ D ++P + +
Sbjct: 339 ENLIERSAQLGELLLEQLKEELGEHPLVGDIRGKGLLVGIELVNDKETKEPADNDKVAS- 397
Query: 603 FFVAALKNELLLRPIG----------NTVYLMPPYILNKNEIQHMTSAIFQTFNELD 649
VAA K + L+ IG N + L PP +++ EI + + +
Sbjct: 398 -VVAACKEKGLI--IGKNGDTVAGYNNVLTLSPPLVISSEEIAFIVGTLKTALERIK 451
|
Length = 451 |
| >gnl|CDD|181234 PRK08117, PRK08117, 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 199 bits (507), Expect = 1e-55
Identities = 127/404 (31%), Positives = 198/404 (49%), Gaps = 21/404 (5%)
Query: 252 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQ 311
GK YLD S V GH + + +A+K Q +KL H + ++ ++KL+E+L+ +T
Sbjct: 41 DGKEYLDFTSGIAVANVGHRHPKVVQAIKEQADKLMHGPSGVIYYESILKLAEELAEITP 100
Query: 312 YKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQS 371
L F+ + GA A+E ALK++ H I +HG TLGAL+VT +S
Sbjct: 101 GGLDCFFFSNSGAEAIEGALKLAKHVTKRPYI------ISFTGCFHGRTLGALSVTTSKS 154
Query: 372 -FKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKK--NHNKIAAIIIE 428
+++ Y LL Y P KG + DLE L K ++AA+IIE
Sbjct: 155 KYRKYYQPLLGSVYQAPYPYCDRCPKGEDPEVCFLECLRDLESLFKHQVTPEEVAAVIIE 214
Query: 429 PLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLC 488
P V GG I+ +LK +REIC+ + I LI DE+ G GRTG++FA + + PD +
Sbjct: 215 P-VLGEGGYIVPPKSFLKKLREICDRHGILLIFDEVQTGFGRTGEWFAAQTFGVVPDIMT 273
Query: 489 LSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKD 548
++KGI G LPLS V+ + ++ + H ++ GNP+AC AALATLE+ ++
Sbjct: 274 IAKGIASG-LPLSAVVASKELMEQ------WPLGSHGTTFGGNPVACAAALATLEVIKEE 326
Query: 549 NILQRISQDMKKITKALTSLI-THPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAA 607
+L ++ + L L HP I + R G++ +++ D E +K
Sbjct: 327 KLLDNANEMGAYALERLEVLKEKHPVIGDVRGIGLMIGIEIVDPDGEPDGDAVEKILDKC 386
Query: 608 LKNELLLR---PIGNTVYLMPPYILNKNEIQHMTSAIFQTFNEL 648
L+ LL GN + ++PP + K EI + + E
Sbjct: 387 LEKGLLFYLCGNAGNVLRMIPPLTVTKEEIDEGLDILDEALTEY 430
|
Length = 433 |
| >gnl|CDD|235913 PRK07036, PRK07036, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 197 bits (503), Expect = 8e-55
Identities = 122/415 (29%), Positives = 209/415 (50%), Gaps = 24/415 (5%)
Query: 252 SGKRYLDAISSWW-VNLFGHSNSYINKALKNQLNKLEHVM-LSNLTHKPVIKLSEKLSSL 309
G+RYLD I W VN+ G+ + A+ +Q +L + ++T+ P +L+ KL+ L
Sbjct: 49 DGRRYLDGIGGMWCVNV-GYGREEMADAIADQARRLPYYTPFGDMTNAPAAELAAKLAEL 107
Query: 310 TQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNI 369
L H F + G++AV+ AL+ +Y+ +G KK I ++YHG T ++T
Sbjct: 108 APGDLNHVFLTTGGSTAVDSALRFVHYYFNVRGRPAKKHIITRGDAYHGSTYLTASLTGK 167
Query: 370 QSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAI----FDLEILLKKNHNKIAAI 425
+ + + + + +++P+ G S E A C F+ +IL + IAA
Sbjct: 168 AADRTEFDYASDLVHHLSSPNPYRRPAGMS--EAAFCDFLVDEFEDKIL-SLGADNIAAF 224
Query: 426 IIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACE-HAEIWP 484
I EP + +GG+I+ Y +REIC Y+I I+DE+ G GR G FFA E I P
Sbjct: 225 IAEP-ILGSGGVIVPPPGYHARMREICRRYDILYISDEVVTGFGRLGHFFASEAVFGIQP 283
Query: 485 DFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNI-NIFLHSHSYSGNPLACCAALATLE 543
D + +KG+T GY PL V+ ++++ + I N N+F H +YSG+P+AC AAL +E
Sbjct: 284 DIITFAKGLTSGYQPLGAVIISERLLDVISGPNAKGNVFTHGFTYSGHPVACAAALKNIE 343
Query: 544 IFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIED------PEQIE 597
I ++ + + + + + L SL P + + R ++ + + + PE I
Sbjct: 344 IMEREGLCEHVREVGPYFEERLASLRELPLVGDVRGDHLMACVECVADKGSKALLPEDI- 402
Query: 598 TFSKKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTS----AIFQTFNEL 648
++ + LL+RP+ + L PP I+ + +I + + AI +T +EL
Sbjct: 403 AIGQRIDRHCQERGLLVRPLEHLCVLSPPLIITRAQIDEIVAILRAAIEETADEL 457
|
Length = 466 |
| >gnl|CDD|181707 PRK09221, PRK09221, beta alanine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 196 bits (500), Expect = 1e-54
Identities = 120/420 (28%), Positives = 212/420 (50%), Gaps = 35/420 (8%)
Query: 248 LITFSGKRYLDAISSWW-VNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKL 306
G++ LD + W N GH I +A+ Q L++ + H +L+E+L
Sbjct: 43 YTDADGRKILDGTAGLWCCNA-GHGRPEIVEAVARQAATLDYAPAFQMGHPLAFELAERL 101
Query: 307 SSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAV 366
+ L L H F+ + G+ +V+ ALK++ Y +G + + I + YHG G ++V
Sbjct: 102 AELAPGGLDHVFFTNSGSESVDTALKIALAYHRARGQGTRTRLIGRERGYHGVGFGGISV 161
Query: 367 TNIQSFKEIYTSLLN------KTYIITTPDSRN-INKGNSAN--EIARCAIFDLEILLKK 417
I + ++++ LL T + N +KG + E+A DLE L+
Sbjct: 162 GGIVNNRKMFGGLLPGVDHLPHTLDL----PENAFSKGQPEHGAELAD----DLERLVA- 212
Query: 418 NH--NKIAAIIIEPLVQCAG--GMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK 473
H + IAA+I+EP+ AG G+++ YL+ +REIC+ + I LI DE+ G GR G
Sbjct: 213 LHDASTIAAVIVEPM---AGSAGVLVPPKGYLQRLREICDKHGILLIFDEVITGFGRLGA 269
Query: 474 FFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYY--KNNINIFLHSHSYSGN 531
FA E + PD + +KG+T G +P+ V+ +D+IY++ + I F H ++YS +
Sbjct: 270 AFAAERFGVTPDIITFAKGLTNGAIPMGAVIASDEIYDAFMQGPEYAIEFF-HGYTYSAH 328
Query: 532 PLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIE 591
P+AC A LATL+I+ ++++ +R ++ A+ SL P +I+ R G++ ++
Sbjct: 329 PVACAAGLATLDIYREEDLFERAAELAPYFEDAVHSLKGLPHVIDIRNIGLVAGIEL--- 385
Query: 592 DPEQIETFSKKF--FVAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNELD 649
P ++ + F+ + LL+R G+T+ L PP I+ K +I + A+ +
Sbjct: 386 APRPGAPGARGYEAFMKCFEKGLLVRYTGDTIALSPPLIIEKAQIDELVDALGDALRAVA 445
|
Length = 445 |
| >gnl|CDD|235823 PRK06541, PRK06541, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 195 bits (498), Expect = 3e-54
Identities = 118/411 (28%), Positives = 198/411 (48%), Gaps = 22/411 (5%)
Query: 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQY 312
GKRYLD ++ +V GH + + +A Q L L + H P I+L+E+L++L
Sbjct: 51 GKRYLDGLAGLFVVQVGHGRAELAEAAAKQAGTLAFFPLWSYAHPPAIELAERLAALAPG 110
Query: 313 KLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSF 372
L F+ + G+ AVE A K++ Y+ G K K I +YHG T GALA+T + +F
Sbjct: 111 DLNRVFFTTGGSEAVESAWKLAKQYFKLTGKPGKHKVISRAIAYHGTTQGALAITGLPAF 170
Query: 373 KEIYTSLLNKTY-IITTPDSRNINKGNSANEIARCAIFDLE-ILLKKNHNKIAAIIIEPL 430
K + L+ + + T R G+ R A +E + + + +AA+ +EP
Sbjct: 171 KAPFEPLVPGGFRVPNTNFYRAPELGDDPEAFGRWAADRIEEAIEFEGPDTVAAVFLEP- 229
Query: 431 VQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS 490
VQ AGG Y + VREIC+ Y++ L++DE+ GR G+ F CE PD + +
Sbjct: 230 VQNAGGCFPPPPGYFERVREICDRYDVLLVSDEVICAFGRLGEMFGCERFGYVPDIITCA 289
Query: 491 KGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNI 550
KGIT GY PL ++ +D+++ + +FLH +++ G+P++ ALA L+IF ++ +
Sbjct: 290 KGITSGYSPLGAMIASDRLFEPFL--DGPTMFLHGYTFGGHPVSAAVALANLDIFEREGL 347
Query: 551 LQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIE-------DPEQIETFSKKF 603
L + + L L+ P + + R G + +++ + ++ E + F
Sbjct: 348 LDHVRDNEPAFRATLEKLLDLPIVGDVRGDGYFYGIELVKDKATKETFTDDESERLLRGF 407
Query: 604 FVAAL-KNELLLR------PIGNTVYLMPPYILNKNEIQHMTSAIFQTFNE 647
AL + L R P+ V L PP I + E + + E
Sbjct: 408 LSPALFEAGLYCRADDRGDPV---VQLAPPLISGQEEFDEIEQILRSVLTE 455
|
Length = 460 |
| >gnl|CDD|183175 PRK11522, PRK11522, putrescine--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 192 bits (489), Expect = 5e-53
Identities = 125/413 (30%), Positives = 210/413 (50%), Gaps = 44/413 (10%)
Query: 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKL---EHVMLSNLTHKPVIKL 302
+ L+ G+ ++D + + + GH N + A++NQL K +L L L
Sbjct: 74 NTLVDTQGQEFIDCLGGFGIFNVGHRNPVVVSAVQNQLAKQPLHSQELLDPLRAM----L 129
Query: 303 SEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLG 362
++ L++LT KL + F+ + G +VE ALK++ Y +G K FI ++HG++LG
Sbjct: 130 AKTLAALTPGKLKYSFFCNSGTESVEAALKLAKAYQSPRG---KFTFIATSGAFHGKSLG 186
Query: 363 ALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKI 422
AL+ T +F++ + LL P R++ GN E R A+ + KK + +
Sbjct: 187 ALSATAKSTFRKPFMPLL--------PGFRHVPFGNI--EAMRTALSEC----KKTGDDV 232
Query: 423 AAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEI 482
AA+I+EP +Q GG+I+ YL VR++C+ + LI DE+ G GRTGK FACEH +
Sbjct: 233 AAVILEP-IQGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQTGMGRTGKMFACEHENV 291
Query: 483 WPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATL 542
PD LCL+K + GG +P+ + T+++++ ++ N FLH+ ++ GNPLAC AALAT+
Sbjct: 292 QPDILCLAKALGGGVMPIGATIATEEVFSVLFD----NPFLHTTTFGGNPLACAAALATI 347
Query: 543 EIFNKDNILQRISQDMKKITKALTSLI-THPKIIN-FRQKGMIWAFDVIIEDPEQIETFS 600
+ + N+ + Q + L +P ++ R KGM+ A + + D E F+
Sbjct: 348 NVLLEQNLPAQAEQKGDYLLDGFRQLAREYPDLVQEARGKGMLMAIEFV--DNEIGYNFA 405
Query: 601 KKFF-----VAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNEL 648
+ F VA N T+ + PP L + + + A + +
Sbjct: 406 SEMFRQRVLVAGTLNN------AKTIRIEPPLTLTIEQCEQVLKAARKALAAM 452
|
Length = 459 |
| >gnl|CDD|236279 PRK08508, PRK08508, biotin synthase; Provisional | Back alignment and domain information |
|---|
Score = 185 bits (471), Expect = 1e-52
Identities = 97/276 (35%), Positives = 141/276 (51%), Gaps = 6/276 (2%)
Query: 677 NEIELAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFC 736
EI L + +I +G C EDC YC QS HY +I K IE ++ A+ AK++GA FC
Sbjct: 2 KEIFLCAISNISSGNCKEDCKYCTQSAHYKADIKRYKRKDIEQIVQEAKMAKANGALGFC 61
Query: 737 MGAAWRELKDRDLDNIENMICEVKKIGLETCLTL--GMLNENQAYRLKKVGLDYYNHNLD 794
+ + R L D+ L+ + VKK L G + Q LKK G+ YNHNL+
Sbjct: 62 LVTSGRGLDDKKLEYVAEAAKAVKKEVPGLHLIACNGTASVEQLKELKKAGIFSYNHNLE 121
Query: 795 TSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPY 854
TS + + I +T +E R T +N + G+ +C GGI GL ES + R + LA+L+
Sbjct: 122 TSKEFFPKICTTHTWEERFQTCENAKEAGLGLCSGGIFGLGESWEDRISFLKSLASLS-- 179
Query: 855 PESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAF 914
P S PIN + PL + L E + + +A+ +P +R+ ++ GR+ + Q
Sbjct: 180 PHSTPINFFIPNPALPLKAPT-LSADEALEIVRLAKEALPNARLMVAGGREVVFGERQYE 238
Query: 915 CFLAGANSIFYGDKLLTTDNTKTNDDSKLLKKLGIN 950
F AGAN+I GD LTT D + LK LG
Sbjct: 239 IFEAGANAIVIGD-YLTTKGEAPKKDIEKLKSLGFE 273
|
Length = 279 |
| >gnl|CDD|240281 PTZ00125, PTZ00125, ornithine aminotransferase-like protein; Provisional | Back alignment and domain information |
|---|
Score = 186 bits (474), Expect = 1e-51
Identities = 112/404 (27%), Positives = 173/404 (42%), Gaps = 41/404 (10%)
Query: 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEK-LSSLTQ 311
GK+Y D +S++ GH + I AL NQ KL S + V+ L+EK ++ L
Sbjct: 30 GKKYYDFLSAYSAVNQGHCHPKILAALINQAQKLTL--TSRAFYNDVLGLAEKYITDLFG 87
Query: 312 YKLGHCFYGSDGASAVEVALKMSFHYWYNKGFL--NKKKFICLQNSYHGETLGALAVTNI 369
Y + GA A E ALK + + Y + N+ K I ++ G T+GA + +
Sbjct: 88 YD--KVLPMNSGAEAGETALKFARKWGYEVKGIPENQAKIIFCNGNFSGRTIGACSASTD 145
Query: 370 QSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEP 429
+ + ++ D + LE LL+ +AA I+EP
Sbjct: 146 PKCYNNFGPFVPGFELVDYND-----------------VEALEKLLQDP--NVAAFIVEP 186
Query: 430 LVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCL 489
+Q G+I+ D YLK V E+C YN+ LI DEI G GRTGK A +H + PD + L
Sbjct: 187 -IQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLGRTGKLLAHDHEGVKPDIVLL 245
Query: 490 SKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDN 549
K ++GG P+S V+ D + I H +Y GNPLAC A+ LE+ ++
Sbjct: 246 GKALSGGLYPISAVLANDDVMLV------IKPGEHGSTYGGNPLACAVAVEALEVLKEEK 299
Query: 550 ILQRISQDMKKITKALTSLITHPKIIN-FRQKGMIWAFDVIIEDPEQIETFSKKFFVAAL 608
+ + + + L L+ + R KG++ A D L
Sbjct: 300 LAENAQRLGEVFRDGLKELLKKSPWVKEIRGKGLLNAIVF---DHSDGVNAWD--LCLKL 354
Query: 609 K-NELLLRPIG-NTVYLMPPYILNKNEIQHMTSAIFQTFNELDE 650
K N LL +P N + PP ++ K ++ I + D
Sbjct: 355 KENGLLAKPTHDNIIRFAPPLVITKEQLDQALEIIKKVLKSFDS 398
|
Length = 400 |
| >gnl|CDD|132415 TIGR03372, putres_am_tran, putrescine aminotransferase | Back alignment and domain information |
|---|
Score = 186 bits (474), Expect = 2e-51
Identities = 121/406 (29%), Positives = 204/406 (50%), Gaps = 41/406 (10%)
Query: 235 LKWRINLPDDISKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNL 294
++W+ + LI G ++D + + + GH N + A++NQL K + + L
Sbjct: 59 VEWQAGGLN---TLIDTQGNEFIDCLGGFGIFNVGHRNPNVIAAVENQLAK-QPLHSQEL 114
Query: 295 THKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQN 354
L++ L++LT KL + F+ + G +VE ALK++ Y +G K FI
Sbjct: 115 LDPLRALLAKTLAALTPGKLKYSFFCNSGTESVEAALKLAKAYQSPRG---KFTFIAASG 171
Query: 355 SYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSA---NEIARCAIFDL 411
++HG++LGAL+ T +F++ + LL P ++ G+ + C
Sbjct: 172 AFHGKSLGALSATAKPAFRKPFMPLL--------PGFHHVAFGDIEAMLKALNEC----- 218
Query: 412 EILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRT 471
KK + +AAII+EP +Q GG+I+ YL VR +C+ + LI DE+ G GRT
Sbjct: 219 ----KKTGDDVAAIILEP-IQGEGGVILPPEGYLPAVRALCDEFGALLILDEVQTGMGRT 273
Query: 472 GKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGN 531
GK FACEH + PD LCL+K + GG +P+ + T+ +++ ++ N FLH+ ++ GN
Sbjct: 274 GKMFACEHEGVQPDILCLAKALGGGVMPIGATIATEAVFSVLFD----NPFLHTTTFGGN 329
Query: 532 PLACCAALATLEIFNKDNILQRISQDMKKITKALTSLIT-HPK-IINFRQKGMIWAFDVI 589
PLAC AALAT+ + N+ + + + L +P II R KG++ A +
Sbjct: 330 PLACAAALATINELLEKNLPAQAAIKGDFLLDGFQQLAAEYPDLIIEARGKGLLMAIEFR 389
Query: 590 IEDPEQIETFSKKFFVAALKNELLLRPIGN--TVYLMPPYILNKNE 633
D E F+K+ F +N L+ + N ++ + PP + +
Sbjct: 390 --DNEIGYAFAKELF---QQNILVAGTLNNAKSIRIEPPLTITIEQ 430
|
Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine [Central intermediary metabolism, Polyamine biosynthesis]. Length = 442 |
| >gnl|CDD|235112 PRK03244, argD, acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 185 bits (471), Expect = 3e-51
Identities = 103/392 (26%), Positives = 181/392 (46%), Gaps = 48/392 (12%)
Query: 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNL-THKPVIKLSEKLSSLTQ 311
GK YLD + VN GH++ + +A+ QL L HV SNL +P I L+E+L L
Sbjct: 42 GKEYLDLLGGIAVNALGHAHPAVVEAVTRQLATLGHV--SNLFATEPQIALAERLVELLG 99
Query: 312 Y-KLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQ 370
+ G F+ + GA A E A K++ + K + + +HG T+GALA+T
Sbjct: 100 APEGGRVFFCNSGAEANEAAFKLARLT-------GRTKIVAAEGGFHGRTMGALALTGQP 152
Query: 371 SFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPL 430
+ + + L ++ G D++ L + AA+ +EP
Sbjct: 153 AKRAPFEPLP--------GGVEHVPYG------------DVDALAAAVDDDTAAVFLEP- 191
Query: 431 VQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS 490
+Q G++ + YL REI + + L+ DE+ G GRTG +FA +H + PD + L+
Sbjct: 192 IQGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQTGIGRTGAWFAHQHDGVTPDVVTLA 251
Query: 491 KGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNI 550
KG+ GG LP+ + + LH ++ GNP+AC AALA L+ + +
Sbjct: 252 KGLGGG-LPIGACLAFGP-AADLLTPG-----LHGSTFGGNPVACAAALAVLDTIASEGL 304
Query: 551 LQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKN 610
L+ + +++ + +L HP + + R +G++ + + +E AA +
Sbjct: 305 LENAERLGEQLRAGIEAL-GHPLVDHVRGRGLLLGIVLTAPVAKAVEA-------AAREA 356
Query: 611 ELLLRPIG-NTVYLMPPYILNKNEIQHMTSAI 641
L+ + + + L PP I+ ++ +A+
Sbjct: 357 GFLVNAVAPDVIRLAPPLIITDAQVDAFVAAL 388
|
Length = 398 |
| >gnl|CDD|235599 PRK05769, PRK05769, 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 185 bits (473), Expect = 6e-51
Identities = 113/414 (27%), Positives = 196/414 (47%), Gaps = 42/414 (10%)
Query: 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLT-- 310
G YLD + V GH++ + KA+K Q K H L++ ++P ++L+E+L +
Sbjct: 53 GNVYLDFNAGIAVTNVGHAHPKVVKAVKEQAEKFLHYSLTDFYYEPAVELAERLVEIAPG 112
Query: 311 --QYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTN 368
+ K+ F+ + G + E A+K++ + +K I ++HG T G+L++T
Sbjct: 113 GFEKKV---FFTNSGTESNEAAIKIA------RYHTGRKYIIAFLGAFHGRTYGSLSLT- 162
Query: 369 IQSFKEIYTS----LLNKTYIITTPDS-RNINKGNSANEIARCAIFDLE-ILLKK--NHN 420
+ K + L+ + P+ RN + E + +E L KK
Sbjct: 163 --ASKPVQRKGFFPLMPGVIHVPYPNPYRNPWGIENPEECGNAVLDFIEDYLFKKLVPPE 220
Query: 421 KIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHA 480
++AAII+EP +Q GG ++ + K +R++ + Y I LI DE+ G GRTGK FA EH
Sbjct: 221 EVAAIIVEP-IQGEGGYVVPPKNFFKELRKLADKYGILLIDDEVQTGMGRTGKMFAIEHF 279
Query: 481 EIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIF---LHSHSYSGNPLACCA 537
+ PD + L+K I GG LPL V+ + + H++++ GNP+A A
Sbjct: 280 GVEPDIITLAKAIAGG-LPLGAVI----------GRAELMFLPPGSHANTFGGNPVAAAA 328
Query: 538 ALATLEIFNKDNILQRISQDMKKITKALTSLIT-HPKIINFRQKGMIWAFDVIIEDPEQI 596
ALATLE ++ +L+ + + + K L L + I + R G++ +++ + E
Sbjct: 329 ALATLEEL-EEGLLENAQKLGEYLRKELKELKEKYEFIGDVRGLGLMIGVELVKDRKEPD 387
Query: 597 ETFSKKFFVAALKNELLLRPIG-NTVYLMPPYILNKNEIQHMTSAIFQTFNELD 649
K A K LLL G + + ++PP I+ + E + + EL
Sbjct: 388 PKLRDKVLYEAFKRGLLLLGAGKSAIRIIPPLIITEEEADIGLEILEEAIKELL 441
|
Length = 441 |
| >gnl|CDD|180390 PRK06082, PRK06082, 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 182 bits (464), Expect = 1e-49
Identities = 107/405 (26%), Positives = 196/405 (48%), Gaps = 30/405 (7%)
Query: 252 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQ 311
GK+Y+D V+ G+ + ++ + +K Q+ KL T++ I+ +EKL+ +
Sbjct: 70 DGKKYMD-FHGNNVHQLGYGHPHVIEKVKEQMAKLP-FSPRRFTNETAIECAEKLTEIAG 127
Query: 312 YKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQS 371
+L + G SA+ +ALK++ H K + L +S+HG +L A++V
Sbjct: 128 GELNRVLFAPGGTSAIGMALKLARHI------TGNFKVVSLWDSFHGASLDAISVGGEAC 181
Query: 372 FKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPL- 430
F++ L+ I S ++ A + LE +++K I A I E +
Sbjct: 182 FRQGMGPLMAGVERIPPAVSYRGAFPDADGSDVHYADY-LEYVIEK-EGGIGAFIAEAVR 239
Query: 431 ---VQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL 487
VQ Y K VREIC+ +N+ LI DEI G GRTG++F + I PD L
Sbjct: 240 NTDVQVP------SKAYWKRVREICDKHNVLLIIDEIPNGMGRTGEWFTHQAYGIEPDIL 293
Query: 488 CLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK 547
C+ KG+ GG +P++ ++T DK Y I L +++ +PL C AALAT+E+ +
Sbjct: 294 CIGKGLGGGLVPIAAMITKDK------YNTAAQISLGHYTHEKSPLGCAAALATIEVIEQ 347
Query: 548 DNILQRISQDMKKITKALTSLIT-HPKIINFRQKGMIWAFDVIIEDPEQIETF--SKKFF 604
+ +L+++ D + + + L + +P I + R G++W +++ + + + ++
Sbjct: 348 EGLLEKVKADSQFMRERLLEMKAKYPLIGDVRGIGLLWGVELVTDRHTKERAYDEAEAVL 407
Query: 605 VAALKNELLLR-PIGNTVYLMPPYILNKNEIQHMTSAIFQTFNEL 648
L N L + GN + L PP I+ + E+ + + + ++
Sbjct: 408 YRCLNNGLSFKVSQGNVIQLSPPLIITREELTQALAILEEAIAKI 452
|
Length = 459 |
| >gnl|CDD|215405 PLN02760, PLN02760, 4-aminobutyrate:pyruvate transaminase | Back alignment and domain information |
|---|
Score = 183 bits (466), Expect = 1e-49
Identities = 116/400 (29%), Positives = 203/400 (50%), Gaps = 17/400 (4%)
Query: 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLE-HVMLSNLTHKPVIKLSEKLSSL-T 310
GK+YLDA++ W G S + A QLNKL + N T KP + L+++L + T
Sbjct: 88 GKKYLDALAGLWCTALGGSEPRLVAAATEQLNKLPFYHSFWNRTTKPSLDLAKELLEMFT 147
Query: 311 QYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQ 370
K+G F+ + G+ A + +K+ ++Y G NKKKFI SYHG TL + +++ +
Sbjct: 148 ARKMGKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARSKSYHGSTLISASLSGLP 207
Query: 371 SFKEIYTSLLNKTYIITT--PDS-RNINKGNSANEIARCAIFDLE-ILLKKNHNKIAAII 426
+ + + L +++ T P R G + E + +LE ++LK+ IAA I
Sbjct: 208 ALHQKFD--LPAPFVLHTDCPHYWRFHLPGETEEEFSTRLADNLENLILKEGPETIAAFI 265
Query: 427 IEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDF 486
EP V AGG+I + Y + ++ + Y+I IADE+ GR G F C+ I PD
Sbjct: 266 AEP-VMGAGGVIPPPATYFEKIQAVLKKYDILFIADEVICAFGRLGTMFGCDKYNIKPDL 324
Query: 487 LCLSKGITGGYLPLSLVMTTDKIYNSIY-YKNNINIFLHSHSYSGNPLACCAALATLEIF 545
+ L+K ++ Y+P+ V+ + +I + I+ N + F H +YSG+P++C AL L+I+
Sbjct: 325 VSLAKALSSAYMPIGAVLVSPEISDVIHSQSNKLGSFAHGFTYSGHPVSCAVALEALKIY 384
Query: 546 NKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFV 605
+ NI + +++ + + + P I R G+I + +++ + F ++ V
Sbjct: 385 KERNIPEHVNKIAPRFQDGIKAFSGSPIIGEIRGTGLILGTE-FVDNKSPNDPFPAEWGV 443
Query: 606 AAL------KNELLLRPIGNTVYLMPPYILNKNEIQHMTS 639
A K +L+R G+ + + PP I+ E+ + S
Sbjct: 444 GAYFGAECKKRGMLVRVAGDNIMMSPPLIITPEEVDELIS 483
|
Length = 504 |
| >gnl|CDD|171472 PRK12403, PRK12403, putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 172 bits (438), Expect = 3e-46
Identities = 115/403 (28%), Positives = 188/403 (46%), Gaps = 31/403 (7%)
Query: 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHV-MLSNLTHKPVIKLSEKLSSLTQ 311
GKRYLD +S W G+ + A Q+ +L + M + TH VI+LSE L SL
Sbjct: 53 GKRYLDGMSGLWCTNLGYGRKDLAAAAARQMEQLPYYNMFFHTTHPAVIELSELLFSLLP 112
Query: 312 YKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQS 371
H Y + G+ A EV ++ YW G KK I N YHG TL A A+ ++
Sbjct: 113 GHYSHAIYTNSGSEANEVLIRTVRRYWQVLGKPQKKIMIGRWNGYHGSTLAATALGGMKF 172
Query: 372 FKEIYTSLLNKTYIITTPDSRNI-------NKGN-SANEIA-RCAIFDLEILLKKNHNKI 422
E+ + PD +I N G + E R A+ E +L+ +
Sbjct: 173 MHEMGGLI---------PDVAHIDEPYWYANGGELTPAEFGRRAALQLEEKILELGAENV 223
Query: 423 AAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEI 482
A + EP Q AGGMI Y ++ IC Y++ L ADE+ G GRTG++FA EH
Sbjct: 224 AGFVAEPF-QGAGGMIFPPESYWPEIQRICRQYDVLLCADEVIGGFGRTGEWFAHEHFGF 282
Query: 483 WPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATL 542
PD L ++KG+T GY+P+ ++ + +I ++ + +F H +YSG+P+A A+A L
Sbjct: 283 EPDTLSIAKGLTSGYVPMGGLVLSKRIAEALVEQG--GVFAHGLTYSGHPVAAAVAIANL 340
Query: 543 EIFNKDNILQRISQDMKK-ITKALTSLI-THPKIINFRQKGMIWAFDVIIEDPEQIETFS 600
+ + ++ R+ D + + L + HP + + G++ A ED + F+
Sbjct: 341 KALRDEGVVTRVKDDTGPYLQRCLREVFGDHPLVGEVQGAGLVAALQ-FAEDKATRKRFA 399
Query: 601 KKFFVA------ALKNELLLRPIGNTVYLMPPYILNKNEIQHM 637
+ +A + +++R + + P + + EI +
Sbjct: 400 NENDLAWRCRTIGFEEGVIIRSTLGRMIMAPALVAGRAEIDEL 442
|
Length = 460 |
| >gnl|CDD|235687 PRK06062, PRK06062, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 168 bits (427), Expect = 7e-45
Identities = 116/430 (26%), Positives = 196/430 (45%), Gaps = 61/430 (14%)
Query: 251 FSGKRYLDAISSWWVNL-FGHSNSYINKALKNQLNKLEHV--MLSNLTHKPVIKLSEKLS 307
+ G+RYLD SS VN GH + + A++ Q +L V +N + + ++
Sbjct: 50 YEGRRYLD-FSSQLVNTNIGHQHPKVVAAIQEQAARLCTVAPAHANDARS---EAARLIA 105
Query: 308 SLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVT 367
L F+ + GA A E A++M+ + + K + SYHG T A+ +T
Sbjct: 106 ERAPGDLSKVFFTNGGADANEHAVRMA------RLHTGRPKVLSAYRSYHGGTGSAINLT 159
Query: 368 -------------NIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLE-I 413
+ F + L + TT E R A+ LE +
Sbjct: 160 GDPRRWPNDTGRAGVVHFFGPF--LYRSEFHATTE----------EEECER-ALAHLERV 206
Query: 414 LLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK 473
+ + + IAAI++E + AG +++ YL VRE+C+ + I LIADE+ G GRTGK
Sbjct: 207 IELEGPSTIAAILLESVPGTAG-ILVPPPGYLAGVRELCDRHGIVLIADEVMAGFGRTGK 265
Query: 474 FFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPL 533
+FA EH + PD + +KG+ GY+PL V ++ I + + + +YSG+PL
Sbjct: 266 WFAIEHFGVVPDLITFAKGVNSGYVPLGGVAISEAIAATFADR----PYPGGLTYSGHPL 321
Query: 534 ACCAALATLEIFNKDNILQ---RISQDMKKITKALTSLIT-HPKIINFRQKGMIWAFDVI 589
AC AA+AT+ ++ I++ RI ++ + L L HP + R G+ WA + +
Sbjct: 322 ACAAAVATINAMEEEGIVENAARIGAEV--LGPGLRELAERHPSVGEVRGLGVFWALE-L 378
Query: 590 IEDPEQIETFSKKF--------FVAALKNELLLRPI-GNTVYLMPPYILNKNEIQHMTSA 640
+ D E E + AA K LL + GN ++++PP + ++E++ +
Sbjct: 379 VADRETREPLAPYGASSAAMAAVKAACKERGLLPFVNGNRIHVVPPCTVTEDEVREGLAI 438
Query: 641 IFQTFNELDE 650
+ D
Sbjct: 439 LDAALAVADA 448
|
Length = 451 |
| >gnl|CDD|180330 PRK05965, PRK05965, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 166 bits (423), Expect = 2e-44
Identities = 118/419 (28%), Positives = 201/419 (47%), Gaps = 31/419 (7%)
Query: 252 SGKRYLDAISSWW-VNL-FGHSNSYINKALKNQLNKLEHVM-LSNLTHKPVIKLSEKLSS 308
SG + LDA + W VN+ +G + I +A Q+ +L + + +P I+L+ KL+
Sbjct: 44 SGHQLLDAFAGLWCVNVGYGQES--IVEAAAEQMRELPYATGYFHFGSEPAIRLAAKLAE 101
Query: 309 LTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGE-TLGALAVT 367
L H ++ G+ AV+ A++ HYW G +KK+FI L+ YHG ++GA +T
Sbjct: 102 RAPGSLNHVYFTLGGSDAVDSAVRFIRHYWNATGRPSKKQFISLERGYHGSSSVGA-GLT 160
Query: 368 NIQSFKEIYTSLLNKTYIITTPDS-RNINKGNSANEIARCAIFDLEILLKK----NHNKI 422
+ +F + L + I +P RN + IA + L K + +
Sbjct: 161 ALPAFHRGFDLPLPWQHKIPSPYPYRNPVGDDPQAIIAA----SVAALRAKVAELGADNV 216
Query: 423 AAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEI 482
AA EP +Q +GG+I+ +LK +RE C I +ADE+ G GRTG FACE +
Sbjct: 217 AAFFCEP-IQGSGGVIVPPKGWLKAMREACRELGILFVADEVITGFGRTGPLFACEAEGV 275
Query: 483 WPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFL-HSHSYSGNPLACCAALAT 541
PD + ++KG+T GY+P+ V+ +D +Y I + H ++YS +P++ L
Sbjct: 276 VPDLMTVAKGLTSGYVPMGAVLMSDHVYQGIADGAGAAAPVGHGYTYSAHPVSAAVGLEV 335
Query: 542 LEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETF-- 599
L ++++ +L + + L +L HP + + R +G++ A +++ D F
Sbjct: 336 LRLYHEGGLLANGQKAGPRFAAGLDALRAHPLVGDVRGRGLLGALELVA-DKATKTPFDA 394
Query: 600 ----SKKFFVAALKNELLLRPIGNTVY-LMPPYILNKNEIQHMTSAIFQ-TFNELDEVI 652
+ + F A N L+ R G+ V P + E IF+ T LD+V+
Sbjct: 395 ALDPADRIFDRAYANGLVFRAFGDGVLGFAPALCCTEGEF----DLIFERTRKTLDDVL 449
|
Length = 459 |
| >gnl|CDD|130940 TIGR01885, Orn_aminotrans, ornithine aminotransferase | Back alignment and domain information |
|---|
Score = 162 bits (412), Expect = 3e-43
Identities = 110/405 (27%), Positives = 186/405 (45%), Gaps = 50/405 (12%)
Query: 253 GKRYLDAISSW-WVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQ 311
GKRYLD +S++ VN GH + I KAL Q LT ++ +
Sbjct: 36 GKRYLDFLSAYSAVNQ-GHCHPKIVKALTEQA--------QKLTLSSRAFYNDVFGEFAE 86
Query: 312 YKLGHCFYGSD-------GASAVEVALKMSFHYWYNKGFL--NKKKFICLQNSYHGETLG 362
Y +G D GA AVE A+K++ + Y + N+ + + ++HG TLG
Sbjct: 87 YV--TKLFGYDKVLPMNTGAEAVETAIKLARKWGYKVKGIPENQAIIVSAKGNFHGRTLG 144
Query: 363 ALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKI 422
A++++ + + + P + I N LE L+ + +
Sbjct: 145 AISMSTDPDSRTNFGPYV--------PGFKKIPYNNLE---------ALEEALEDHGPNV 187
Query: 423 AAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEI 482
A I+EP +Q G+++ D YLK VRE+C +N+ LIADEI G GRTGK +H +
Sbjct: 188 CAFIVEP-IQGEAGVVVPDDGYLKKVRELCTKHNVLLIADEIQTGLGRTGKLLCVDHENV 246
Query: 483 WPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATL 542
PD + L K ++GG P+S V+ D + +I H +Y GNPLAC A+A L
Sbjct: 247 KPDIVLLGKALSGGVYPVSAVLADDDVMLTIKPGE------HGSTYGGNPLACAVAVAAL 300
Query: 543 EIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKK 602
E+ ++ + + ++ + +I + + P I R +G++ A I+ D + +
Sbjct: 301 EVLEEEKLAEN-AEKLGEIFRDQLKKLPKPIITEVRGRGLLNA---IVIDESKTGRTAWD 356
Query: 603 FFVAALKNELLLRPI-GNTVYLMPPYILNKNEIQHMTSAIFQTFN 646
+ + LL +P GN + L PP ++ + ++ I + +
Sbjct: 357 LCLKLKEKGLLAKPTHGNIIRLAPPLVITEEQLDEGLEIIKKVID 401
|
This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis (OMNI|PG1271), and the other from Staphylococcus aureus (OMNI|SA0170). After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis (SP|P38021). Length = 401 |
| >gnl|CDD|177748 PLN00144, PLN00144, acetylornithine transaminase | Back alignment and domain information |
|---|
Score = 161 bits (408), Expect = 4e-43
Identities = 118/416 (28%), Positives = 193/416 (46%), Gaps = 54/416 (12%)
Query: 247 KLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHK-PVIKLSEK 305
KL GK YLD + VN GH + KA+ Q L HV SN+ H P ++L+++
Sbjct: 8 KLYDVEGKEYLDMAAGIAVNALGHGDPDWVKAVAEQAGTLAHV--SNVYHTIPQVELAKR 65
Query: 306 L--SSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKK-------FICLQNSY 356
L SS F+ + G A E A+K + Y + K F+ NS+
Sbjct: 66 LVASSFAD----RVFFCNSGTEANEAAIKFARKYQRVRAPDKKDPAASSATEFVSFSNSF 121
Query: 357 HGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLK 416
HG TLGALA+T+ + ++ + L+ P + GN E AR I
Sbjct: 122 HGRTLGALALTSKEQYRTPFEPLM--------PGVTFVEYGNL--EAARKLI-------- 163
Query: 417 KNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFA 476
K AA+ +EP VQ GG+ +L+ +R +C+ L+ DE+ G GRTG +A
Sbjct: 164 -QKGKTAAVFVEP-VQGEGGIYPATKEFLQGLRALCDEAGALLVFDEVQCGLGRTGYLWA 221
Query: 477 CEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACC 536
E + PD + L+K + GG LP+ V+ T+K+ ++I + H +++G PL C
Sbjct: 222 HEAYGVEPDIMTLAKPLAGG-LPIGAVLVTEKVASAINPGD------HGSTFAGGPLVCN 274
Query: 537 AALATLEIFNKDNILQRISQDMKKITKALT-SLITHPKIINFRQKGMIWAFDVIIEDPEQ 595
AALA L+ +K L +++ + + + L L +P + R G++ V I Q
Sbjct: 275 AALAVLDKISKPGFLASVAKKGEYLRELLRRKLGGNPHVKEVRGVGLL----VGI----Q 326
Query: 596 IETFSKKFFVAALKNELLLRPI--GNTVYLMPPYILNKNEIQHMTSAIFQTFNELD 649
++ + A + LL+ G+ V L+PP ++++ E++ + LD
Sbjct: 327 LDVPAGPLVDACRDSGLLVLTAGKGDVVRLVPPLVISEAELEQAVEILADCLPALD 382
|
Length = 382 |
| >gnl|CDD|181401 PRK08360, PRK08360, 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 157 bits (398), Expect = 4e-41
Identities = 108/417 (25%), Positives = 191/417 (45%), Gaps = 32/417 (7%)
Query: 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEK 305
+K+ G Y+D +S V GH+N + KA+K Q +KL H + L+EK
Sbjct: 33 AKVWDIEGNEYIDFLSDAAVQNVGHNNPRVVKAIKEQTDKLIHYTPIYGFPVEPLLLAEK 92
Query: 306 LSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALA 365
L + +G G+ A + A+K + + + ++K + SY+G T GA++
Sbjct: 93 LIEIAPGDNPKVSFGLSGSDANDGAIKFA------RAYTKRRKILSYLRSYYGSTYGAMS 146
Query: 366 VTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKI--- 422
+T + L+ + I PD G C + +E + +K ++
Sbjct: 147 LTGLDFPVRALVGELSDVHYIPYPDCYRCPFGKEPGS---CKMECVEYIKEKFEGEVYAE 203
Query: 423 --AAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHA 480
AA+ EP +Q GMI+ Y K +++I + + I L+ DE+ G GRTGK+FA EH
Sbjct: 204 GVAALFAEP-IQGDAGMIVPPEDYFKKLKKILDEHGILLVVDEVQSGLGRTGKWFAIEHF 262
Query: 481 EIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALA 540
+ PD + L K + GG LP+S + +I +S + H+ + SGNP+A AALA
Sbjct: 263 GVEPDIITLGKPLGGG-LPISATIGRAEIMDS------LPPLAHAFTLSGNPVASAAALA 315
Query: 541 TLEIFNKDNILQRISQ----DMKKITKALTSLITHPKIINFRQKGMIWAFDVII--EDPE 594
+E + N+L+R + K++ + H I + R G++ D++ E E
Sbjct: 316 VIEEIEEKNLLKRAEKLGNYTKKRLEEMKKK---HELIGDVRGIGLMIGVDLVKDRETKE 372
Query: 595 QIETFSKKFFVAALKNELLLRPI-GNTVYLMPPYILNKNEIQHMTSAIFQTFNELDE 650
+ + K A + L++ GN + + PP + K + + + +++E
Sbjct: 373 RAYEEAAKVVWRAWELGLIVTFFSGNVLRIQPPLTIEKEVLDEGLDILEEAIEDVEE 429
|
Length = 443 |
| >gnl|CDD|129792 TIGR00709, dat, 2,4-diaminobutyrate 4-transaminases | Back alignment and domain information |
|---|
Score = 155 bits (392), Expect = 2e-40
Identities = 111/426 (26%), Positives = 187/426 (43%), Gaps = 33/426 (7%)
Query: 247 KLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKL 306
+ GK YLD ++ GH++ + + + + L + +LT E L
Sbjct: 32 WVTDVEGKEYLDFLAGAGTLALGHNHPNMKQKILDYLQSGLPLHTLDLTTPLKDAFIEAL 91
Query: 307 SS-LTQYKLGHC--FYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGA 363
+ + + K+ + F G GA AVE A+K++ K + + I +HG T+GA
Sbjct: 92 LNIIPKRKMDYKLQFPGPSGADAVEAAIKLA------KTYTGRTNVISFSGGFHGMTIGA 145
Query: 364 LAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHN--- 420
LAVT K L+ + P G + +I E ++ +
Sbjct: 146 LAVTGNLFAKNAVGMLMPGVQFMPYPHEYRCPFGIGGEAGSNASIEYFENFIEDVESGVD 205
Query: 421 KIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHA 480
K AA+I+E +Q GG++ S +L+ +RE+ ++I LI DE+ G GR+G FA EHA
Sbjct: 206 KPAAVILEA-IQGEGGVVAAPSEWLQKIREVTRKHDIKLILDEVQAGFGRSGTMFAFEHA 264
Query: 481 EIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALA 540
I PDF+ +SK + GG LPL+ V+ +++ H+ ++ GN LA
Sbjct: 265 GIEPDFVVMSKAVGGG-LPLA-VLLIAPEFDAWQPAG------HTGTFRGNQLAMVTGTE 316
Query: 541 TLEIFNKDNILQRISQDMKKITKALTSLIT-HPKIINFRQKGMIWAFDVIIED--PEQIE 597
L + DN+ Q + ++IT L +I HP I N R +G++ ++ E +
Sbjct: 317 ALNYWKDDNLAQNAQERGERITSFLDDMIKEHPCIGNVRGRGLMQGIMIVDERQSKDATG 376
Query: 598 TFSKKFFVAA------LKNELLLRPIG---NTVYLMPPYILNKNEIQHMTSAIFQTFNEL 648
+ + +AA +N LLL G L+ P +++ E + S Q E
Sbjct: 377 AYPRDCELAAAIQGACFENGLLLETGGREGEVFRLLCPITIDQEECEEGISRFKQAVEEA 436
Query: 649 DEVINL 654
+ L
Sbjct: 437 LAEVRL 442
|
This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase [Central intermediary metabolism, Other]. Length = 442 |
| >gnl|CDD|233853 TIGR02407, ectoine_ectB, diaminobutyrate--2-oxoglutarate aminotransferase | Back alignment and domain information |
|---|
Score = 153 bits (388), Expect = 5e-40
Identities = 105/415 (25%), Positives = 189/415 (45%), Gaps = 64/415 (15%)
Query: 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEK 305
S L GK Y+D + +GH+N + +AL ++++ + H + K
Sbjct: 27 STLWDEDGKEYIDFFAGAGALNYGHNNPKLKQAL------IDYLADDGIIHSLDMATEAK 80
Query: 306 ---LSSLTQ---------YKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQ 353
L + + YK+ F G G +AVE ALK++ + + +
Sbjct: 81 REFLETFNEIILKPRGLDYKVQ--FPGPTGTNAVESALKLA------RKVTGRSNVVSFT 132
Query: 354 NSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEI 413
N++HG TLG+L+VT + ++ L+ P + E
Sbjct: 133 NAFHGMTLGSLSVTGNRFKRQGAGVPLSNV--SRMPYDGYLGGDVDTIAY-------FEK 183
Query: 414 LLKKNH---NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGR 470
LL+ + + AA+I+E VQ GG+ + +L+ + ++C ++I LI D+I GCGR
Sbjct: 184 LLEDSSSGVDLPAAVILET-VQGEGGINVASDEWLQRLEKLCRRHDILLIVDDIQAGCGR 242
Query: 471 TGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFL---HSHS 527
TG FF+ E A I PD +CLSK I+G LPL+L + K ++++ H+ +
Sbjct: 243 TGTFFSFEPAGIEPDIVCLSKSISGYGLPLALTL----------IKPELDVWKPGEHNGT 292
Query: 528 YSGNPLACCAALATLEIFNKDNILQR-ISQDMKKITKALTSLI-THPKII-NFRQKGMIW 584
+ GN LA A A LE + D+ ++ + + + I + L ++ +P++I R +G++
Sbjct: 293 FRGNNLAFVTATAALEYYWSDDAFEKAVQRKSEIIQERLDRIVAEYPELIKQVRGRGLMQ 352
Query: 585 AFDVIIEDPEQIETFSKKFFVAALKNELLLR---PIGNTVYLMPPYILNKNEIQH 636
+ D + K AA +N L++ P + L+PP +++ +Q
Sbjct: 353 GIECGDGD------LAGKIAKAAFENGLIIETSGPNDEVIKLLPPLTIDEETLQQ 401
|
Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore (SP|Q9Z3R2) or 1,3-diaminopropane (SP|P44951) biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance [Cellular processes, Adaptations to atypical conditions]. Length = 412 |
| >gnl|CDD|179933 PRK05093, argD, bifunctional N-succinyldiaminopimelate- aminotransferase/acetylornithine transaminase protein; Reviewed | Back alignment and domain information |
|---|
Score = 148 bits (377), Expect = 1e-38
Identities = 104/394 (26%), Positives = 177/394 (44%), Gaps = 53/394 (13%)
Query: 252 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSN-LTHKPVIKLSEKLSSLT 310
GK Y+D V GH + + KALK Q KL H +SN T++P ++L++KL T
Sbjct: 38 QGKEYIDFAGGIAVTALGHCHPALVKALKEQGEKLWH--ISNVFTNEPALRLAKKLIDAT 95
Query: 311 QYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQ 370
+ F+ + GA A E A K++ Y ++ K + I NS+HG TL ++V
Sbjct: 96 FAE--RVFFANSGAEANEAAFKLARRYACDRHGPEKTEIIAFHNSFHGRTLFTVSVGGQP 153
Query: 371 SFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPL 430
+ + + G +I DL + + A+++EP+
Sbjct: 154 KYSDGF--------------------GPKPADITHVPFNDLAAVKAVIDDHTCAVVVEPI 193
Query: 431 VQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS 490
Q GG+I +L+ +RE+C+ +N LI DE+ G GRTG FA H + PD L +
Sbjct: 194 -QGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGMGRTGDLFAYMHYGVTPDILTSA 252
Query: 491 KGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNI 550
K + GG+ P+ ++TT +I + + H +Y GNPLAC A A +I N +
Sbjct: 253 KALGGGF-PIGAMLTTAEIASH------FKVGTHGSTYGGNPLACAVAEAVFDIINTPEV 305
Query: 551 LQRISQDMKKITKALTSLITHPKIIN--------FRQKGMIWAFDVIIEDPEQIETFSKK 602
L+ + ++ L + IN R G++ + E Q + ++
Sbjct: 306 LEGVKARRQRFVDGL-------QKINQKYGVFSEIRGMGLL----IGAELKPQYKGRARD 354
Query: 603 FFVAALKNELLLRPIG-NTVYLMPPYILNKNEIQ 635
F AA + +++ G + + P ++ + +I
Sbjct: 355 FLNAAAEEGVMVLVAGPDVLRFAPSLVIEEADID 388
|
Length = 403 |
| >gnl|CDD|101376 PRK04013, argD, acetylornithine/acetyl-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 147 bits (373), Expect = 1e-38
Identities = 110/398 (27%), Positives = 194/398 (48%), Gaps = 61/398 (15%)
Query: 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQY 312
G+RYLD I+ VN+ GH++ + + QL KL V H+ ++ E+LS Y
Sbjct: 23 GRRYLDLIAGIGVNVLGHNHPEWVEEMSEQLEKLV-VAGPMFEHEEKEEMLEELSKWVNY 81
Query: 313 KLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSF 372
+ + + G+ G AVE ALK + + + +K+ I + N++HG T+GAL+ T +
Sbjct: 82 E--YVYMGNSGTEAVEAALK------FARLYTGRKEIIAMTNAFHGRTMGALSATWKPKY 133
Query: 373 KEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQ 432
+E + L+ P ++I + E A+ AI + AA+I EP +Q
Sbjct: 134 REDFEPLV--------PGFKHIPFNDV--EAAKEAI----------TKETAAVIFEP-IQ 172
Query: 433 CAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKG 492
GG++ ++K +R++ + LIADE+ G RTGKF A EH ++ PD + + KG
Sbjct: 173 GEGGIVPAKEEFVKTLRDLTEDVGALLIADEVQSGL-RTGKFLAIEHYKVEPDIVTMGKG 231
Query: 493 ITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQ 552
I G +P+SL +T + H ++ GNPLAC A TL I ++ +++
Sbjct: 232 IGNG-VPVSLTLTNFDVERG----------KHGSTFGGNPLACKAVAVTLRILRRERLVE 280
Query: 553 RISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNE- 611
+ + +I +++ R +G++ ++++ P +V L+N
Sbjct: 281 KAGEKFIEIKGE--------RVVTTRGRGLM--IGIVLKKP-------VGKYVEELQNRG 323
Query: 612 LLLRPIGNTVY-LMPPYILNKNEIQHMTSAIFQTFNEL 648
L+ G V L+PP I++K+ ++ SAI N++
Sbjct: 324 YLVHTAGQRVIRLLPPLIISKDTMEEAKSAIEGVINDI 361
|
Length = 364 |
| >gnl|CDD|129783 TIGR00700, GABAtrnsam, 4-aminobutyrate aminotransferase, prokaryotic type | Back alignment and domain information |
|---|
Score = 148 bits (376), Expect = 2e-38
Identities = 110/392 (28%), Positives = 178/392 (45%), Gaps = 42/392 (10%)
Query: 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLT-- 310
G R +D S V GHS+ + A++ Q+ + H ++ + L+EKL+ +
Sbjct: 32 GNRLIDFASGIAVLNIGHSHPRVVDAVRTQVAEFTHTCFMVTPYEGYVALAEKLNRIAPG 91
Query: 311 QYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVT-NI 369
F+ S GA AVE A+K++ + + + + + +HG T +A+T +
Sbjct: 92 SGPKKSVFFNS-GAEAVENAVKIA------RSYTGRPGVVAFDHGFHGRTNMTMALTAKV 144
Query: 370 QSFK--------EIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNK 421
+K E+Y + L Y D + G A + D+ N
Sbjct: 145 MPYKSGFGPFAPEVYRAPLPYPYRDGLLDKQLSTDGELA-AARAIFVIDVGA------NN 197
Query: 422 IAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAE 481
+AA++IEP VQ GG I+ ++ + + C + I IADE+ G RTG FACEH
Sbjct: 198 VAALVIEP-VQGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQTGFARTGAMFACEHEG 256
Query: 482 IWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALAT 541
PD + +K + G LPLS V +I ++ +Y+GNPLAC AALA
Sbjct: 257 PEPDLITTAKSLADG-LPLSGVTGRAEIMDAPAPGG------LGGTYAGNPLACAAALAV 309
Query: 542 LEIFNKDNILQRISQDMKKITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDPEQIE--- 597
L I + +++R Q + +T LT+L P+I + R G + A +++ DP E
Sbjct: 310 LAIIESEGLIERARQIGRLVTDRLTTLKAVDPRIGDVRGLGAMIAVELV--DPGTTEPDA 367
Query: 598 TFSKKFFVAALKNELLLRPI---GNTVYLMPP 626
+++ AA LLL GN + +PP
Sbjct: 368 GLAERIATAAHAAGLLLLTCGMFGNIIRFLPP 399
|
This enzyme is a class III pyridoxal-phosphate-dependent aminotransferase. This model describes known bacterial examples of the enzyme. The best archaeal matches are presumed but not trusted to have the equivalent function. The degree of sequence difference between this set and known eukaryotic (mitochondrial) examples is greater than the distance to some proteins known to have different functions, and so separate models are built for prokaryotic and eukaryotic sets. E. coli has two isozymes. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase [Central intermediary metabolism, Other]. Length = 420 |
| >gnl|CDD|132290 TIGR03246, arg_catab_astC, succinylornithine transaminase family | Back alignment and domain information |
|---|
Score = 147 bits (373), Expect = 3e-38
Identities = 95/324 (29%), Positives = 155/324 (47%), Gaps = 33/324 (10%)
Query: 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSN-LTHKPVIKLSE 304
S++ GK Y+D VN GH++ + KAL Q +KL H + N T++PV++L++
Sbjct: 27 SRVWDQQGKEYIDFAGGIAVNALGHAHPELVKALIEQADKLWH--IGNGYTNEPVLRLAK 84
Query: 305 KLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGAL 364
KL T F+ + GA A E ALK++ Y +K +K + + +NS+HG TL +
Sbjct: 85 KLVDATFAD--KVFFCNSGAEANEAALKLARRYALDKHGADKSEIVAFKNSFHGRTLFTV 142
Query: 365 AVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAA 424
+V + + + L I DL +K A
Sbjct: 143 SVGGQPKYSQGFAPL--------------------PGGIKHAPYNDLAAAKALISDKTCA 182
Query: 425 IIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWP 484
+I+EP +Q GG++ D +LK +RE+C+ +N LI DE+ G GRTG+ +A H + P
Sbjct: 183 VIVEP-IQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVTP 241
Query: 485 DFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEI 544
D L +K + GG+ P+ ++TT + ++ + H +Y GNPLAC A L++
Sbjct: 242 DILTSAKALGGGF-PIGAMLTTTE------IAAHLKVGTHGTTYGGNPLACAVAGKVLDL 294
Query: 545 FNKDNILQRISQDMKKITKALTSL 568
N +L + Q L +
Sbjct: 295 VNTPELLAGVKQRHDLFVDGLEKI 318
|
Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason [Energy metabolism, Amino acids and amines]. Length = 397 |
| >gnl|CDD|215335 PLN02624, PLN02624, ornithine-delta-aminotransferase | Back alignment and domain information |
|---|
Score = 146 bits (370), Expect = 2e-37
Identities = 108/398 (27%), Positives = 185/398 (46%), Gaps = 54/398 (13%)
Query: 253 GKRYLDAISSW-WVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQ 311
GK+YLD +S++ VN GH + I KAL Q KL + S + + LT
Sbjct: 74 GKKYLDFLSAYSAVNQ-GHCHPKIIKALTEQAEKL--TLSSRAFYNDKFPEFAEY--LTS 128
Query: 312 YKLGHCFYGSD-------GASAVEVALKMSFHYWYNKGFL--NKKKFICLQNSYHGETLG 362
+G D GA VE A+K++ + Y K + N+ + +HG TL
Sbjct: 129 M------FGYDMVLPMNTGAEGVETAIKLARKWGYEKKGIPKNEAIIVSCCGCFHGRTLA 182
Query: 363 ALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKI 422
A++++ + LL P ++ G+ + LE + +++ ++I
Sbjct: 183 AISMSCDNEATRGFGPLL--------PGHLKVDFGD---------LDALEKIFEEDGDRI 225
Query: 423 AAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEI 482
AA + EP +Q G+++ YLK VRE+C+ +N+ +IADEI G RTGK AC+ E+
Sbjct: 226 AAFLFEP-IQGEAGVVIPPDGYLKAVRELCSKHNVLMIADEIQTGLARTGKMLACDWEEV 284
Query: 483 WPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATL 542
PD + L K + GG +P+S V+ + I H ++ GNPLA A+A L
Sbjct: 285 RPDVVILGKALGGGVIPVSAVLADKDVMLCIKPGE------HGSTFGGNPLASAVAMAAL 338
Query: 543 EIFNKDNILQRISQDMKKITKALTSLIT--HPKII-NFRQKGMIWAFDVIIEDPEQIETF 599
++ + + +R S + + + I PK+I R +G+ + ++ + ++
Sbjct: 339 QVVQDEKLAER-SAKLGQELRDQLQKIQKQFPKLIKEVRGRGL---LNAVVLNSPKLGPV 394
Query: 600 SKKFFVAALK-NELLLRPI-GNTVYLMPPYILNKNEIQ 635
S LK LL +P + L PP ++++E+Q
Sbjct: 395 SAYDVCLKLKERGLLAKPTHDTIIRLAPPLSISEDELQ 432
|
Length = 474 |
| >gnl|CDD|179505 PRK02936, argD, acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 142 bits (360), Expect = 1e-36
Identities = 109/397 (27%), Positives = 186/397 (46%), Gaps = 57/397 (14%)
Query: 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVI-KLSE 304
+K+ +GK YLD S V GH + + KA++ QL+ + HV SNL + +++
Sbjct: 21 TKVTDNNGKTYLDFTSGIAVCNLGHCHPTVTKAVQEQLDDIWHV--SNLFTNSLQEEVAS 78
Query: 305 KLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGAL 364
L+ + L F+ + GA A E ALK++ + G K K + + S+HG T G +
Sbjct: 79 LLAENSAGDL--VFFCNSGAEANEAALKLARKH---TG---KSKIVTFEQSFHGRTFGTM 130
Query: 365 AVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAA 424
+ T + KE + LL P N D++ L + + ++AA
Sbjct: 131 SATGQEKIKEGFGPLLPG--FTHVP----FN--------------DIKALKEVMNEEVAA 170
Query: 425 IIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWP 484
+++E VQ GG+I D +L+ V+ +C + LI DE+ G GRTG FA E + P
Sbjct: 171 VMLEV-VQGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIGRTGTLFAYEQFGLDP 229
Query: 485 DFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIF---LHSHSYSGNPLACCAALAT 541
D + ++KG+ G +P+ + I K F H ++ GNPLA AA
Sbjct: 230 DIVTVAKGLGNG-IPVGAM---------IGKKELGTAFGPGSHGSTFGGNPLAMAAAKEV 279
Query: 542 LEIFNKDNILQRISQDMKKITKALTSLITH-PKIINFRQKGMIWAFDVIIEDPEQIETFS 600
L++ + + L+ + + + + L + H + N R KG++ + IE E++
Sbjct: 280 LQVIKQPSFLEEVQEKGEYFLQKLQEELEHLECVKNIRGKGLM----IGIECTEEVAP-- 333
Query: 601 KKFFVAALKNE-LLLRPIG-NTVYLMPPYILNKNEIQ 635
+ L+ E LL+ G N + L+PP ++ K E+
Sbjct: 334 ---VIEQLREEGLLVLSAGPNVIRLLPPLVVTKEELD 367
|
Length = 377 |
| >gnl|CDD|236149 PRK08088, PRK08088, 4-aminobutyrate aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 143 bits (361), Expect = 1e-36
Identities = 124/474 (26%), Positives = 206/474 (43%), Gaps = 83/474 (17%)
Query: 207 KYSKSLIFNRQALHAYKLGLIHP------KNNLKLKWRINLPDDISKLITFSGKRYLDAI 260
+KSL+ R A +G IHP +N ++ G+ YLD
Sbjct: 2 NTNKSLMQRRSAAVPRGVGQIHPIFADRAEN--------------CRVWDVEGREYLDFA 47
Query: 261 SSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGH-CFY 319
V GH + + A++ QL KL H L ++P ++L EK++
Sbjct: 48 GGIAVLNTGHLHPKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEKMNQKVPGDFAKKTLL 107
Query: 320 GSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVT------------ 367
+ G+ AVE A+K++ G I +YHG T LA+T
Sbjct: 108 VTTGSEAVENAVKIARAATKRSGV------IAFTGAYHGRTHYTLALTGKVNPYSAGMGL 161
Query: 368 ---NIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNH---NK 421
++ ++ +Y L+ +++ ++ I R IF KN
Sbjct: 162 MPGHV--YRALYPCPLH-----------GVSEDDAIASIER--IF-------KNDAAPED 199
Query: 422 IAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAE 481
IAAIIIEP VQ GG +++ +R +C+ + I LIADE+ G GRTG FA E
Sbjct: 200 IAAIIIEP-VQGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQTGAGRTGTLFAMEQMG 258
Query: 482 IWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALAT 541
+ D +K I GG+ PL+ V ++ ++I +Y+GNP+AC AALA
Sbjct: 259 VAADLTTFAKSIAGGF-PLAGVTGRAEVMDAIAPGG------LGGTYAGNPIACAAALAV 311
Query: 542 LEIFNKDNILQRISQDMKKITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDPEQIE--- 597
L++F ++N+LQ+ + +K+ L ++ HP+I + R G + A + + ED + +
Sbjct: 312 LKVFEQENLLQKANALGEKLKDGLLAIAEKHPEIGDVRGLGAMIAIE-LFEDGDHSKPNA 370
Query: 598 TFSKKFFVAALKNELLLR---PIGNTVYLMPPYILNKNEIQHMTSAIFQTFNEL 648
+ + A L+L P N + ++ P + +I+ I Q F+E
Sbjct: 371 KLTAQIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQGLEIIAQCFDEA 424
|
Length = 425 |
| >gnl|CDD|215526 PLN02974, PLN02974, adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Score = 147 bits (374), Expect = 2e-36
Identities = 107/449 (23%), Positives = 187/449 (41%), Gaps = 97/449 (21%)
Query: 257 LDAISSWWVNLFGHSNSYINKALKNQL--------NKLEHVMLSNLTHKPVIKLSEKLSS 308
DA +SWW + L+ +L + HVM H+P ++ +E L
Sbjct: 368 FDACASWWT-------QGPDPTLQPELARAVAYAAGRYGHVMFPENVHEPALRAAELL-- 418
Query: 309 LTQYKLG--------HCFYGSDGASAVEVALKMSFH-YWYNKGFLNKK------------ 347
LG F+ +G++A+EVALKM+F + + GFL
Sbjct: 419 -----LGGPGKGWASRVFFSDNGSTAIEVALKMAFRKFIVDHGFLENSGNEKRGGDLIEL 473
Query: 348 KFICLQNSYHGETLGALAVTNIQSFKEIYTSLL--------------------NKTYIIT 387
K + L SYHG+TLGA+ Q+ ++T L N + I+
Sbjct: 474 KVLALDGSYHGDTLGAM---EAQA-PSVFTGFLQQPWYSGRGLFLDPPTVGMRNGRWNIS 529
Query: 388 TPDSRN-INKGNSANEIARCAIFDLEILLKKNHN--------------------KIAAII 426
P+ + +G +R +FD IAA+I
Sbjct: 530 LPEGFSSGLEGEETTWESRDEVFDKTRDSTPLAKAYRSYIEQQLDEYEASAKNGHIAALI 589
Query: 427 IEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDF 486
IEP++ AGGM++ D ++ + + ++C + I +I DE+ G R G A E PD
Sbjct: 590 IEPVLHGAGGMLLIDPLFQRALVQVCRSRKIPVIFDEVFTGLWRLGVESAWELLGCKPDI 649
Query: 487 LCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN 546
C +K +TGG +PL+ + T++++ + + ++ LH HSY+ +P+ C AA L+ +
Sbjct: 650 ACYAKLLTGGLVPLAATLATEEVFEAFRGPSKLDALLHGHSYTAHPMGCAAAAKALQWYK 709
Query: 547 KDNILQRISQDMKKI-----TKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQ-IETFS 600
+ + ++ + + ++ + P + G + A ++ E +
Sbjct: 710 DPSTNPNLIPPGSRLRELWDEELVRAISSLPNVERVVSLGTVLALELDAEGSGSGYSSLY 769
Query: 601 KKFFVAALKNE--LLLRPIGNTVYLM-PP 626
+ V L+ E + RP+GN VYLM P
Sbjct: 770 ARSVVRRLRREDGIYARPLGNVVYLMCGP 798
|
Length = 817 |
| >gnl|CDD|179736 PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional | Back alignment and domain information |
|---|
Score = 139 bits (351), Expect = 2e-35
Identities = 114/397 (28%), Positives = 183/397 (46%), Gaps = 66/397 (16%)
Query: 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVI-KLSEKLSSLTQ 311
G RY+D +S++ GH + I +ALK+Q +K+ + S H + EK++ LT
Sbjct: 39 GNRYMDMLSAYSAVNQGHRHPKIIQALKDQADKV--TLTSRAFHSDQLGPWYEKVAKLT- 95
Query: 312 YKLGHCFYGSD-------GASAVEVALKMSFHYWYN-KGFL-NKKKFICLQNSYHGETLG 362
G D GA AVE A+K + + Y+ KG NK + I + ++HG T+
Sbjct: 96 --------GKDMVLPMNTGAEAVETAIKAARRWAYDVKGVEPNKAEIIACEGNFHGRTMA 147
Query: 363 ALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKI 422
A+++++ + +K + +L P + I G DLE L
Sbjct: 148 AVSLSSEEEYKRGFGPML--------PGIKKIPYG------------DLEALKAAITPNT 187
Query: 423 AAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEI 482
AA ++EP +Q G+ + +LK RE+C N+ IADEI G GRTGK FAC+ +
Sbjct: 188 AAFLVEP-IQGEAGINIPPEGFLKAARELCKEENVLFIADEIQTGLGRTGKLFACDWDNV 246
Query: 483 WPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFL---HSHSYSGNPLACCAAL 539
PD L K + GG P+S V I + +F H ++ GNPLAC ++
Sbjct: 247 TPDMYILGKALGGGVFPISCVAANRDI---------LGVFTPGSHGSTFGGNPLACAVSI 297
Query: 540 ATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETF 599
A LE+ ++ + +R S ++ + K I +P I R +G+ ++
Sbjct: 298 AALEVLEEEKLPER-SLELGEYFKEQLKEIDNPMIKEVRGRGLFIGVEL---------NE 347
Query: 600 SKKFFVAALKNE-LLLRPIGNTVY-LMPPYILNKNEI 634
+ + ALK E LL + TV PP ++ K E+
Sbjct: 348 PARPYCEALKEEGLLCKETHETVIRFAPPLVITKEEL 384
|
Length = 396 |
| >gnl|CDD|183486 PRK12381, PRK12381, bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional | Back alignment and domain information |
|---|
Score = 139 bits (351), Expect = 2e-35
Identities = 91/323 (28%), Positives = 156/323 (48%), Gaps = 31/323 (9%)
Query: 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEK 305
S+L GK Y+D VN GH++ + +AL Q +K H + T++PV++L++K
Sbjct: 31 SRLWDQQGKEYIDFAGGIAVNALGHAHPALREALNEQASKFWHTG-NGYTNEPVLRLAKK 89
Query: 306 LSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALA 365
L T F+ + GA A E ALK++ Y +++ +K + +N++HG TL ++
Sbjct: 90 LIDATFAD--RVFFCNSGAEANEAALKLARKYAHDRYGSHKSGIVAFKNAFHGRTLFTVS 147
Query: 366 VTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAI 425
+ + + L +I A DL ++ A+
Sbjct: 148 AGGQPKYSQDFAPL--------------------PPDIRHAAYNDLNSASALIDDQTCAV 187
Query: 426 IIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPD 485
I+EP +Q GG+I D +L+ +RE+C+ +N LI DE+ G GRTG+ +A H + PD
Sbjct: 188 IVEP-IQGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVTPD 246
Query: 486 FLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIF 545
L +K + GG+ P+ ++TT+K + + + H +Y GNPLA A LE+
Sbjct: 247 VLTTAKALGGGF-PIGAMLTTEK------CASVMTVGTHGTTYGGNPLASAVAGKVLELI 299
Query: 546 NKDNILQRISQDMKKITKALTSL 568
N +L + Q + L ++
Sbjct: 300 NTPEMLNGVKQRHDWFVERLNTI 322
|
Length = 406 |
| >gnl|CDD|236437 PRK09264, PRK09264, diaminobutyrate--2-oxoglutarate aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 139 bits (353), Expect = 3e-35
Identities = 116/422 (27%), Positives = 186/422 (44%), Gaps = 98/422 (23%)
Query: 246 SKLITFSGKRYLD----AISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTH----- 296
S L GK Y+D A + +N +GH+N + +AL ++++ +TH
Sbjct: 31 SWLYDEDGKEYIDFFAGAGA---LN-YGHNNPVLKQAL------IDYLQRDGITHGLDMH 80
Query: 297 ---KPVIKLSEKLSSLTQ---------YKLGHCFYGSDGASAVEVALKMSFHYWYNKGFL 344
K E L + + YK+ F G G +AVE ALK++ G
Sbjct: 81 TTAK-----REFLETFEETILKPRGLDYKVQ--FTGPTGTNAVEAALKLARKV---TG-- 128
Query: 345 NKKKFICLQNSYHGETLGALAVTNIQSF-KEIYTSLLNKT------YIITTPDSRNINKG 397
+ + N +HG TLG+LAVT + L N T Y G
Sbjct: 129 -RTNIVAFTNGFHGMTLGSLAVTGNSHKRQGAGVPLNNVTRMPYDGYF-----------G 176
Query: 398 NSANEIARCAIFDLEILLKKNH---NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNN 454
+ +A LE LL+ + + AA+I+E VQ GG+ + + +L+ + ++C
Sbjct: 177 GDVDTLA-----YLEKLLEDSSSGVDLPAAVIVET-VQGEGGINVASAEWLQRLAKLCRK 230
Query: 455 YNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGY-LPLSLVMTTDKIYNSI 513
++I LI D+I GCGRTG FF+ E A I PD + LSK I GY LP++LV+
Sbjct: 231 HDILLIVDDIQAGCGRTGTFFSFERAGITPDIVTLSKSI-SGYGLPMALVL--------- 280
Query: 514 YYKNNINIFL---HSHSYSGNPLACCAALATLEIFNKDNILQR-ISQDMKKITKALTSLI 569
K ++++ H+ ++ GN LA A A LE + D+ ++ + + + + L +
Sbjct: 281 -IKPELDVWKPGEHNGTFRGNNLAFVTATAALEEYWSDDAFEKEVKAKGELVRERLEEIA 339
Query: 570 -THPK-IINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLR---PIGNTVYLM 624
+P R +GM+ D D E + K A +N L++ P V L+
Sbjct: 340 AKYPGLGAEVRGRGMMQGIDF--GDGE----LAGKIAAEAFENGLIIETSGPEDEVVKLL 393
Query: 625 PP 626
PP
Sbjct: 394 PP 395
|
Length = 425 |
| >gnl|CDD|236026 PRK07482, PRK07482, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 137 bits (348), Expect = 2e-34
Identities = 107/412 (25%), Positives = 191/412 (46%), Gaps = 35/412 (8%)
Query: 252 SGKRYLDAISSWW-VNLFGHSNSYINKALKNQLNKLE--HVMLSNLTHKPVIKLSEKLSS 308
G+RY+DA + + VN+ G+ + + +A+ Q +L H + + T + I LS+++
Sbjct: 48 QGRRYIDAFAGLYCVNV-GYGRTEVAEAIAEQAKELAYYHTYVGHGT-EASITLSKRIID 105
Query: 309 LTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTN 368
+ +YG G+ A E +K+ ++Y G KKK I YHG + ++T
Sbjct: 106 RAPAGMSKVYYGLSGSDANETQIKLVWYYNNVLGRPEKKKIISRWRGYHGSGVVTGSLTG 165
Query: 369 IQSFKEIYTSLLNKTYIITTPDS-RNINKGNSANE-IARCAIFDLEILLKKNHNKIAAII 426
+ F + + + + P R + G S + A CA E++L + + IAA I
Sbjct: 166 LSLFHQHFDLPIARVLHTEAPHYYRRADAGMSEEQFSAYCADELEELILAEGPDTIAAFI 225
Query: 427 IEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDF 486
EP V GG++ + Y ++ + Y+I LIADE+ G GR G F +H I PD
Sbjct: 226 AEP-VLGTGGIVPPPAGYWPAIQAVLKKYDILLIADEVVTGFGRLGSMFGSDHYGIEPDL 284
Query: 487 LCLSKGITGGYLPLSLVMTTDKIYNSIYY-KNNINIFLHSHSYSGNPLACCAALATLEIF 545
+ ++KG+T Y PLS + +K+++ + + H +YSG+P+ AALA L+I
Sbjct: 285 ITVAKGLTSAYAPLSGSIVGEKVWDVLEQGSDEHGAIGHGWTYSGHPICAAAALANLDIL 344
Query: 546 NKDNILQRISQD----MKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSK 601
++N++ ++ ++ A HP + R GM+ A + + D + +
Sbjct: 345 ERENLVGNAAEVGAYFRARLRAAFGD---HPLVGEVRGVGMLAAVE-FVADRD-----DR 395
Query: 602 KFFVAALK-----------NELLLR--PIGNTVYLMPPYILNKNEIQHMTSA 640
F ALK ++ R P G+ + PP +L + E + +
Sbjct: 396 TPFDPALKIGPQVSAAALERGVIARAMPHGDILGFAPPLVLTRAEADEIVAI 447
|
Length = 461 |
| >gnl|CDD|214877 smart00876, BATS, Biotin and Thiamin Synthesis associated domain | Back alignment and domain information |
|---|
Score = 126 bits (318), Expect = 2e-34
Identities = 47/93 (50%), Positives = 61/93 (65%), Gaps = 1/93 (1%)
Query: 859 PINNLVQIKGTPLYG-SSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFL 917
PIN L I+GTPL + P EF+RTIA AR+ +P + IR+S GR+ + QA CF
Sbjct: 1 PINRLRPIEGTPLEDPPPPVSPEEFLRTIAAARLALPDAGIRLSTGREALLRDLQALCFS 60
Query: 918 AGANSIFYGDKLLTTDNTKTNDDSKLLKKLGIN 950
AGANSIF GDK LTT ++ DD +L+KLG+
Sbjct: 61 AGANSIFGGDKYLTTSGPRSADDVAMLEKLGLE 93
|
Biotin synthase (BioB), , catalyses the last step of the biotin biosynthetic pathway. The reaction consists in the introduction of a sulphur atom into dethiobiotin. BioB functions as a homodimer. Thiamin synthesis if a complex process involving at least six gene products (ThiFSGH, ThiI and ThiJ). Two of the proteins required for the biosynthesis of the thiazole moiety of thiamine (vitamin B(1)) are ThiG and ThiH (this entry) and form a heterodimer. Both of these reactions are thought of involve the binding of co-factors, and both function as dimers.. This domain therefore may be involved in co-factor binding or dimerisation. Length = 94 |
| >gnl|CDD|181493 PRK08593, PRK08593, 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 136 bits (345), Expect = 3e-34
Identities = 102/428 (23%), Positives = 194/428 (45%), Gaps = 36/428 (8%)
Query: 248 LITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLS 307
L GK Y+D ++S GH+ + +A+K Q +K H + + H+P+++L++KL
Sbjct: 36 LTDVDGKTYIDLLASASSQNVGHAPPRVVEAIKAQADKFIHYTPAYMYHEPLVRLAKKLC 95
Query: 308 SLT--QYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALA 365
L ++ F G G+ A + +K + + + + I N+YHG T G+L+
Sbjct: 96 ELAPGDFEKRVTF-GLSGSDANDGIIKFA------RAYTGRPYIISFTNAYHGSTYGSLS 148
Query: 366 VTNIQ-SFKEIYTSLLNKTYIITTPDS-RNINKGNSANEIAR-CAIFDLEILLKKNHNKI 422
++ I + + Y LL I PD R + + AN + A +++
Sbjct: 149 MSGISLNMRRKYGPLLPGFVHIPFPDKYRGMYEEPDANFVEEYLAPLKEMFEKYLPADEV 208
Query: 423 AAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEI 482
A I+IE +Q GG++ Y + + + C + I D+I G GRTGK+ + H I
Sbjct: 209 ACIVIET-IQGDGGLLEPVPGYFEALYKFCREHGILFAVDDIQQGLGRTGKWSSISHFNI 267
Query: 483 WPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATL 542
PD + K + GG +P+S ++ +I S+ ++ + NP++C AALAT+
Sbjct: 268 TPDLMSFGKSLAGG-MPMSAIVGRKEIMESLEAPAHL------FTTGANPVSCAAALATI 320
Query: 543 EIFNKDNILQRISQDMKKITKALTSLIT-HPKIINFRQKGMIWAFDVIIEDPEQIETFSK 601
++ +++LQR ++ + K ++ + + + R G+ D I+ D + ++
Sbjct: 321 DMIEDESLLQRSAEKGEYARKRFDQWVSKYNFVGDVRGYGLSIGID-IVSDKKLKTRDNE 379
Query: 602 KFFVAALK--------NELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNELDEVIN 653
AALK +++ GN + PP ++ ++ + I Q F L+
Sbjct: 380 ----AALKICNYCFEHGVVIIAVAGNVLRFQPPLVITYEQLDTALNTIEQAFTALEA--G 433
Query: 654 LFNLPFND 661
+ P
Sbjct: 434 KLDQPDIS 441
|
Length = 445 |
| >gnl|CDD|179636 PRK03715, argD, acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Score = 134 bits (339), Expect = 8e-34
Identities = 104/422 (24%), Positives = 178/422 (42%), Gaps = 73/422 (17%)
Query: 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLT------HKPV 299
S L +GKRYLD I W VN GH N + +AL Q KL + ++P+
Sbjct: 28 SWLYDHNGKRYLDFIQGWAVNCLGHCNPGMVEALAAQAEKL-------INPSPAFYNEPM 80
Query: 300 IKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKK---KFICLQNSY 356
KL+ L+ + + F+ + GA A E A+K++ + G +K + I +S+
Sbjct: 81 AKLAGLLTQHSCFD--KVFFANSGAEANEGAIKLARKW----GRKHKNGAYEIITFDHSF 134
Query: 357 HGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIA---RCAIFDLEI 413
HG TL ++ + + I+ A ++ + + D+
Sbjct: 135 HGRTLATMSASGKPGWDTIF-----------------------APQVPGFPKAELNDIAS 171
Query: 414 LLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK 473
+ K +K A+++EP VQ GG+I +++ +R + + + LI DE+ GCGRTG
Sbjct: 172 VEKLITDKTVAVMLEP-VQGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQTGCGRTGT 230
Query: 474 FFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSH---SYSG 530
FA E + I PD + L KGI GG +PL+ ++ + + +F +Y+G
Sbjct: 231 LFAYELSGIEPDIMTLGKGIGGG-VPLAALLAKAE----------VAVFEAGDQGGTYNG 279
Query: 531 NPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVII 590
NPL +A + L+ + + + + L L + R +G++ A +
Sbjct: 280 NPLMTAVGVAVISQLLAPGFLEGVRARGEYLKEKLLELSEERGLEGERGEGLLRALLLGK 339
Query: 591 EDPEQIETFSKKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNELDE 650
+ QI ++ L LL P N + MP + EI M L
Sbjct: 340 DIGPQIVEKARDMQPDGL---LLNAPRPNLLRFMPALNVTTEEIDQM-------IAMLRS 389
Query: 651 VI 652
V+
Sbjct: 390 VL 391
|
Length = 395 |
| >gnl|CDD|211331 cd02557, PseudoU_synth_ScRIB2, Pseudouridine synthases similar to Saccharomyces cerevisiae RIB2 | Back alignment and domain information |
|---|
Score = 127 bits (322), Expect = 3e-33
Identities = 63/207 (30%), Positives = 108/207 (52%), Gaps = 36/207 (17%)
Query: 28 KLDIIYEDNEIIILNKSAGLVVHPAIGN-----LSGTLFD--NLLEIYPFLINVPRAGIV 80
+ I++ED+++++++K +G+ VHP G ++ L L E+ P
Sbjct: 15 PIKIVHEDDDLLVVDKPSGIPVHPT-GRYRYNTVTEILKSEYGLTELRP----------C 63
Query: 81 HRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG-IPKLNGMINAAIMRNPH 139
HRLD+ +SGL++ AK+ ++ L Q++ V+++YLA V G P +++ I
Sbjct: 64 HRLDRLTSGLLLFAKTSQTASRLQQQIRSREVKKEYLARVKGEFPDGEVVVDQPIG---L 120
Query: 140 NRIKMTVSKNFNA--KPALTYYERLATGIINK-KHISLIRCNLKTGRTHQIRVHMQWLGH 196
K + + + K A T ++RL+ N + S++ C TGRTHQIRVH+Q+LGH
Sbjct: 121 VSPKGGLRNDVDEKGKDARTIFKRLSY---NGDLNTSVVLCKPITGRTHQIRVHLQYLGH 177
Query: 197 GIVGDNLYGKKYSKSLIFNRQALHAYK 223
IV D + Y+ I+ LHA +
Sbjct: 178 PIVNDPI----YNNLGIY----LHALR 196
|
Pseudouridine synthase, Saccharomyces cerevisiae RIB2_like. This group is comprised of eukaryotic and bacterial proteins similar to Saccharomyces cerevisiae RIB2, S. cerevisiae Pus6p and human hRPUDSD2. S. cerevisiae RIB2 displays two distinct catalytic activities. The N-terminal domain of RIB2 is RNA:psi-synthase which makes psi32 on cytoplasmic tRNAs. Psi32 is highly phylogenetically conserved. The C-terminal domain of RIB2 has a DRAP deaminase activity which catalyses the formation of 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione 5'-phosphate from 2,5-diamino-6-ribitylamino-4(3H)-pyrimidinone 5'-phosphate during riboflavin biosynthesis. S. cerevisiae Pus6p makes the psi31 of cytoplasmic and mitochondrial tRNAs. Length = 213 |
| >gnl|CDD|235885 PRK06918, PRK06918, 4-aminobutyrate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Score = 134 bits (338), Expect = 3e-33
Identities = 111/403 (27%), Positives = 195/403 (48%), Gaps = 34/403 (8%)
Query: 248 LITFSGKRYLD---AISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSE 304
+ G +Y+D AI + V GHS+ + +AL Q+++ H + + ++P I+L+E
Sbjct: 48 VTDVDGNQYIDFAGAIGTINV---GHSHPKVKEALHKQVDQYIHTGFNVMMYEPYIELAE 104
Query: 305 KLSSLT--QYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLG 362
KL++L + F S GA AVE A+K++ Y +G I +HG TL
Sbjct: 105 KLAALAPGSFDKKVLFLNS-GAEAVENAVKIARKYTKRQGI------ISFSRGFHGRTLM 157
Query: 363 ALAVTN-IQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAI--FDLEILLKKNH 419
+ +T+ ++ +K + + Y P +G + + I F + +
Sbjct: 158 TMTMTSKVKPYKFGFGPFAPEVYKAPFPYEYRRPEGLTEEQYDDFMIEEFKNFFISEVAP 217
Query: 420 NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEH 479
IAA+++EP VQ GG I+ +++ VR IC+ + I +ADEI G RTGK+FA EH
Sbjct: 218 ETIAAVVMEP-VQGEGGFIVPSKKFVQEVRNICSEHGILFVADEIQTGFARTGKYFAIEH 276
Query: 480 AEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAAL 539
++ PD + +SK + G +P+S V+ +I + +Y+G+PL C AAL
Sbjct: 277 FDVVPDLITVSKSLGAG-VPISGVIGRKEIMDE------SAPGELGGTYAGSPLGCAAAL 329
Query: 540 ATLEIFNKDNILQRISQDMKKITKALTSLIT-HPKIINFRQKGMIWAFDVIIEDPEQIE- 597
A L+I K+N+ R + K + + + I + R G + AF+ +++D + E
Sbjct: 330 AVLDIIEKENLNDRAIELGKVVMNRFEEMKNKYNCIGDVRGLGAMCAFE-LVQDRKTKEP 388
Query: 598 --TFSKKFFVAALKNELLLRPI---GNTVYLMPPYILNKNEIQ 635
T + A K LLL GN + ++ P ++ +++
Sbjct: 389 DKTLTANICKEANKRGLLLLSAGTYGNVIRVLMPLVITDEQLE 431
|
Length = 451 |
| >gnl|CDD|179803 PRK04260, PRK04260, acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 132 bits (333), Expect = 3e-33
Identities = 99/395 (25%), Positives = 170/395 (43%), Gaps = 55/395 (13%)
Query: 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEK 305
+ LI GK+YLD S V G + + +AL+ Q + H P + L+
Sbjct: 21 NYLIDTDGKKYLDFSSGIGVTNLGF-HPQVQQALQKQAG--------LIWHSPNLYLNSL 71
Query: 306 LSSLTQYKLGH----CFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETL 361
+ Q +G F+ + GA A E A+K++ + K++ I QNS+HG T
Sbjct: 72 QEEVAQKLIGDKDYLAFFCNSGAEANEAAIKIA------RKATGKQEIITFQNSFHGRTF 125
Query: 362 GALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNK 421
G+++ T K+ + G+ + DL + +
Sbjct: 126 GSMSATGQDKIKDGF--------------------GDGVPHFSYAIFNDLNSVKALVNKN 165
Query: 422 IAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAE 481
AA+++E LVQ G++ D ++K + + C I LI DE+ G GRTGK +A EH
Sbjct: 166 TAAVMLE-LVQGESGVLPADKDFVKALADYCQETGILLIVDEVQTGMGRTGKLYAFEHYG 224
Query: 482 IWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALAT 541
I PD L+KG+ G +P+ ++ + + Y + H ++ GN L+ AA AT
Sbjct: 225 IEPDIFTLAKGLANG-VPVGAMLAKSSLGGAFGYGS------HGSTFGGNKLSMAAASAT 277
Query: 542 LEIFNKDNILQRISQDMKKITKALT-SLITHPKIINFRQKGMIWAFDVIIEDPEQIETFS 600
L+I L++ ++ + + L +L + R G + + D Q+ +
Sbjct: 278 LDIMLTAGFLEQALENGNYLQEQLQKALQDKETVTTVRGLGYMIGIET-TADLSQLVEAA 336
Query: 601 KKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQ 635
+ K ++L N + L+PP L K EI+
Sbjct: 337 RD------KGLIVLTAGTNVIRLLPPLTLTKEEIE 365
|
Length = 375 |
| >gnl|CDD|235889 PRK06931, PRK06931, diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 130 bits (329), Expect = 4e-32
Identities = 117/407 (28%), Positives = 184/407 (45%), Gaps = 45/407 (11%)
Query: 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSL--- 309
G +YLD ++ GH++ + +++++ L + +LT SE L SL
Sbjct: 57 GNQYLDCLAGAGTLALGHNHPDVLQSIQDVLTSGLPLHTLDLTTPLKDAFSEYLLSLLPG 116
Query: 310 --TQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVT 367
+Y L G GA AVE A+K++ K + + I YHG T GALAVT
Sbjct: 117 QGKEYCLQFT--GPSGADAVEAAIKLA------KTYTGRSNVISFSGGYHGMTHGALAVT 168
Query: 368 NIQSFKEIYTSLLNKTYIITTPDSRN--INKGNSANEIARCAIFDLEIL-LKKNHNKIAA 424
S K L+ + P + G A A F+ I ++ K AA
Sbjct: 169 GNLSPKNAVNGLMPGVQFMPYPHEYRCPLGIGGEAGVKALTYYFENFIEDVESGVRKPAA 228
Query: 425 IIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWP 484
+I+E +Q GG+ +L+ +RE+ + I LI DE+ G RTGK FA EHA I P
Sbjct: 229 VILEA-IQGEGGVNPAPVEWLQKIREVTQKHGILLIVDEVQAGFARTGKMFAFEHAGIEP 287
Query: 485 DFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEI 544
D + +SK + GG LPL+ V+ K +++ H+ ++ GN LA L TL+I
Sbjct: 288 DIIVMSKAVGGG-LPLA-VLGIKKEFDAWQPGG------HTGTFRGNQLAMATGLTTLKI 339
Query: 545 FNKDNILQRISQDMKKITKALTSLIT-HPKIINFRQKGMIWAFDVIIE------------ 591
++N+ Q ++ + + L L +P I N R +G++ +++ E
Sbjct: 340 LKEENLAQNAAERGEWLKAQLAELQKRYPCIGNVRGRGLMIGIEIVDERQPADAMGSYPA 399
Query: 592 DPEQIETFSKKFFVAALKNELLLRP---IGNTVYLMPPYILNKNEIQ 635
D E K F +N LLL GN V L+PP ++ + E +
Sbjct: 400 DGELAAAIQKACF----ENGLLLERGGRNGNVVRLLPPLLITQAECE 442
|
Length = 459 |
| >gnl|CDD|236032 PRK07495, PRK07495, 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 128 bits (324), Expect = 1e-31
Identities = 103/385 (26%), Positives = 185/385 (48%), Gaps = 34/385 (8%)
Query: 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLT-- 310
G+RY+D + V GH + + A+K QL++ H + ++ ++L+E+L++L
Sbjct: 39 GRRYIDFAAGIAVVNTGHRHPRVIAAVKAQLDRFTHTCHQVVPYENYVRLAERLNALVPG 98
Query: 311 QYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVT-NI 369
+ F + GA AVE A+K++ + I +HG T +++T +
Sbjct: 99 DFAKKTIFV-TTGAEAVENAVKIARAA------TGRSAVIAFGGGFHGRTFMGMSLTGKV 151
Query: 370 QSFKEIYTSLLNKTYIITTP-DSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIE 428
+K + +++ Y + P + ++ S + + D++ ++AAIIIE
Sbjct: 152 VPYKVGFGAMMPDVYHVPFPVELHGVSVEQSLAALDKLFKADVD------PQRVAAIIIE 205
Query: 429 PLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLC 488
P VQ GG + ++K +RE+C+ + I LIADE+ G RTGK FA EH E+ D
Sbjct: 206 P-VQGEGGFYPAPAAFMKALRELCDQHGILLIADEVQTGFARTGKLFAMEHHEVAADLTT 264
Query: 489 LSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKD 548
++KG+ GG PL+ V +I ++ +Y GNPL AA A L++ ++
Sbjct: 265 MAKGLAGG-FPLAAVTGRAEIMDAPGPGG------LGGTYGGNPLGIAAAHAVLDVIEEE 317
Query: 549 NILQRISQDMKKITKALTSLITH-PKIINFRQKGMIWAFDVIIEDPEQIE---TFSKKFF 604
++ +R +Q ++ + L SL P+I + R G + A V D + F+ +
Sbjct: 318 DLCERANQLGNRLKQRLASLRETVPEIADIRGPGFMNA--VEFNDADSGLPSAEFANRVR 375
Query: 605 VAALKNELLLRPI---GNTVYLMPP 626
+ AL+ L+L GN + + P
Sbjct: 376 LKALEKGLILLTCGVHGNVIRFLAP 400
|
Length = 425 |
| >gnl|CDD|216150 pfam00849, PseudoU_synth_2, RNA pseudouridylate synthase | Back alignment and domain information |
|---|
Score = 119 bits (299), Expect = 4e-31
Identities = 49/156 (31%), Positives = 75/156 (48%), Gaps = 7/156 (4%)
Query: 38 IIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSI 97
I++NK AG+ VHP + L + + R VHRLD+N+SGL+++AK
Sbjct: 1 YIVVNKPAGVPVHPTDPS---DLLSLTALLLVAELGKFRLYPVHRLDRNTSGLLLLAKDG 57
Query: 98 KSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALT 157
++ L V+++YLA+V G + G I A I + + + K A+T
Sbjct: 58 EAANKLNKLFPERKVEKEYLALVDGPEEEEGTIKAPI--KKDKAVGFRKKEELDGKLAVT 115
Query: 158 YYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQW 193
+ L +G K SL+ L TGR HQIR H+
Sbjct: 116 HLRVLRSGSKEKY--SLVELELVTGRKHQIRAHLAA 149
|
Members of this family are involved in modifying bases in RNA molecules. They carry out the conversion of uracil bases to pseudouridine. This family includes RluD, a pseudouridylate synthase that converts specific uracils to pseudouridine in 23S rRNA. RluA from E. coli converts bases in both rRNA and tRNA. Length = 149 |
| >gnl|CDD|235685 PRK06058, PRK06058, 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 126 bits (318), Expect = 9e-31
Identities = 109/402 (27%), Positives = 182/402 (45%), Gaps = 63/402 (15%)
Query: 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLT-- 310
G R +D S V G+S + +A++ Q+ + H ++ + ++E+L+ LT
Sbjct: 55 GNRLIDLGSGIAVTSVGNSAPRVVEAVREQVARFTHTCFMVTPYEGYVAVAEQLNRLTPG 114
Query: 311 QYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQ 370
++ + S GA AVE A+K++ Y ++ + ++YHG T +A+T
Sbjct: 115 DHEKRSALFNS-GAEAVENAVKIARSY------TGRQAVVVFDHAYHGRTNLTMALTAKS 167
Query: 371 S-FK--------EIYTSLLNKTYIITTPDSRNINKGNSANEIARCAI--FDLEILLKKNH 419
+K E+Y + ++ Y E A AI + ++
Sbjct: 168 MPYKSGFGPFAPEVYRAPMSYPYRDPKGL------ATDGEEAAARAITVIEKQV----GA 217
Query: 420 NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEH 479
+ +AA+IIEP +Q GG I+ +L + E C + IADE+ G RTG +FACEH
Sbjct: 218 DNLAAVIIEP-IQGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQTGFARTGAWFACEH 276
Query: 480 AEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSH------SYSGNPL 533
I PD + +KGI GG LPLS V +I ++ H +Y GNP+
Sbjct: 277 EGIVPDLITTAKGIAGG-LPLSAVTGRAEIMDAP------------HPGGLGGTYGGNPV 323
Query: 534 ACCAALATLEIFNKDNILQRISQDMKKITKALTSLI-THPKIINFRQKGMIWAFDVIIE- 591
AC AALA +E +D+++ R Q +T L +L +I + R +G + A +++
Sbjct: 324 ACAAALAAIETIEEDDLVARARQIEALMTDRLRALAAEDDRIGDVRGRGAMIAIELVKPG 383
Query: 592 ----DPEQIETFSKKFFVAALKNELLLRPIG---NTVYLMPP 626
D E +K AA +++ G N + L+PP
Sbjct: 384 TTEPDAE----LTKALAAAAHAAGVIVLTCGTYGNVIRLLPP 421
|
Length = 443 |
| >gnl|CDD|234848 PRK00854, rocD, ornithine--oxo-acid transaminase; Reviewed | Back alignment and domain information |
|---|
Score = 125 bits (315), Expect = 9e-31
Identities = 107/393 (27%), Positives = 175/393 (44%), Gaps = 55/393 (13%)
Query: 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLT-----HKPVIKLSEKLS 307
G RYLD +S++ GH + I A+ Q +L LT + + L E+L+
Sbjct: 40 GNRYLDCLSAYSAVNQGHCHPKILAAMVEQAGRL------TLTSRAFRNDQLAPLYEELA 93
Query: 308 SLT-QYKLGHCFYGSDGASAVEVALKMSFHYWYN-KGFL-NKKKFICLQNSYHGETLGAL 364
+LT +K+ + GA AVE A+K + Y KG + + I +++HG TL
Sbjct: 94 ALTGSHKV---LPMNSGAEAVETAIKAVRKWGYEVKGVPEGQAEIIVCADNFHGRTLS-- 148
Query: 365 AVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIF-DLEILLKKNHNKIA 423
I F T PD+R G R F D E L
Sbjct: 149 ----IVGFS-------------TDPDARG-GFGPFTPGF-RVVPFGDAEALEAAITPNTV 189
Query: 424 AIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIW 483
A ++EP +Q G+I+ + Y VRE+C N+ LI DEI G GRTGK A EH I
Sbjct: 190 AFLVEP-IQGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQTGLGRTGKLLAEEHEGIE 248
Query: 484 PDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLE 543
D + K ++GG+ P+S V++ ++ + H ++ GNPLAC A A L+
Sbjct: 249 ADVTLIGKALSGGFYPVSAVLSNSEVLGVLKPGQ------HGSTFGGNPLACAVARAALK 302
Query: 544 IFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKF 603
+ ++ +++ ++ + L S I + R +G++ A ++ + E +
Sbjct: 303 VLTEEGMIENAAEMGAYFLEGLRS-IRSNIVREVRGRGLMLAVEL------EPEAGGARQ 355
Query: 604 FVAALKNELLL--RPIGNTVYLMPPYILNKNEI 634
+ ALK LL +T+ L PP ++ + ++
Sbjct: 356 YCEALKERGLLAKDTHDHTIRLAPPLVITREQV 388
|
Length = 401 |
| >gnl|CDD|180690 PRK06777, PRK06777, 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 125 bits (315), Expect = 1e-30
Identities = 98/383 (25%), Positives = 184/383 (48%), Gaps = 49/383 (12%)
Query: 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQY 312
G+ Y+D + V GH + + A++ QL++ H + + + L+E++++L
Sbjct: 39 GREYIDFAAGIAVLNTGHRHPKVVAAVRQQLDQFTHTAYQIVPYASYVTLAERINALAPI 98
Query: 313 KLGHC---FYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVT-N 368
G F+ + GA AVE A+K++ Y G I ++HG TL +A+T
Sbjct: 99 D-GPAKTAFF-TTGAEAVENAVKIARAYTGRPGV------IAFGGAFHGRTLLTMALTGK 150
Query: 369 IQSFK--------EIYTSLL-NKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNH 419
+ +K I+ +L N+ + ++ ++ + S + + I
Sbjct: 151 VAPYKVGFGPFPGSIFHALYPNELHGVSVEEALS-----SVERLFKADI---------AP 196
Query: 420 NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEH 479
+++AAI++EP +Q GG + ++ +R +C+ + I LIADE+ G RTGK FA E+
Sbjct: 197 DQVAAILLEP-IQGEGGFNVAPPEFMSALRTLCDEHGILLIADEVQTGFARTGKLFAMEY 255
Query: 480 AEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAAL 539
++ PD + ++K + GG P+S V+ ++ ++ +Y+GNPLA AAL
Sbjct: 256 YDVKPDLITMAKSLGGGM-PISAVVGRAEVMDAPAPGG------LGGTYAGNPLAVAAAL 308
Query: 540 ATLEIFNKDNILQRISQDMKKITKALTSLITH-PKIINFRQKGMIWAFDVIIEDPEQIE- 597
A L++ ++ + QR + + L P I++ R +G + A V DP+ +
Sbjct: 309 AVLDVIAEEKLCQRALILGAHLVEVLEKAKASCPAIVDIRARGSMVA--VEFNDPQTGKP 366
Query: 598 --TFSKKFFVAALKNELLLRPIG 618
F++++ AL+ LLL G
Sbjct: 367 SPEFTRQYQRQALEEGLLLLSCG 389
|
Length = 421 |
| >gnl|CDD|182078 PRK09792, PRK09792, 4-aminobutyrate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 123 bits (311), Expect = 4e-30
Identities = 107/392 (27%), Positives = 178/392 (45%), Gaps = 34/392 (8%)
Query: 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEK 305
+ L G Y+D + V GH + + A++ QL + H + ++ + L+EK
Sbjct: 32 ATLKDVEGNEYIDFAAGIAVLNTGHRHPDLVAAVEQQLQQFTHTAYQIVPYESYVTLAEK 91
Query: 306 LSSLT--QYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGA 363
+++L + F+ + GA AVE A+K++ + + I +HG T
Sbjct: 92 INALAPVSGQAKTAFF-TTGAEAVENAVKIA------RAHTGRPGVIAFSGGFHGRTYMT 144
Query: 364 LAVT-NIQSFKEIYTSLLNKTYIITTP-DSRNINKGNSANEIARCAIFDLEILLKKNHNK 421
+A+T + +K + Y + P D I+ +S + I R D+E +
Sbjct: 145 MALTGKVAPYKIGFGPFPGSVYHVPYPSDLHGISTQDSLDAIERLFKSDIEA------KQ 198
Query: 422 IAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAE 481
+AAII EP VQ GG + + +R +C+ + I +IADE+ G RTGK FA +H
Sbjct: 199 VAAIIFEP-VQGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQSGFARTGKLFAMDHYA 257
Query: 482 IWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALAT 541
PD + ++K + GG +PLS V+ I ++ +Y+GNPLA AA A
Sbjct: 258 DKPDLMTMAKSLAGG-MPLSGVVGNANIMDAPAPGG------LGGTYAGNPLAVAAAHAV 310
Query: 542 LEIFNKDNILQRISQDMKKITKALTSLI-THPKIINFRQKG-MIWA--FDVIIEDPEQIE 597
L I +K+++ +R +Q +++ L + P I R G MI A D +P
Sbjct: 311 LNIIDKESLCERANQLGQRLKNTLIDAKESVPAIAAVRGLGSMIAAEFNDPQTGEPSAA- 369
Query: 598 TFSKKFFVAALKNELLLR---PIGNTVYLMPP 626
++K AL LLL GN + + P
Sbjct: 370 -IAQKIQQRALAQGLLLLTCGAYGNVIRFLYP 400
|
Length = 421 |
| >gnl|CDD|211333 cd02563, PseudoU_synth_TruC, tRNA pseudouridine isomerase C | Back alignment and domain information |
|---|
Score = 117 bits (296), Expect = 8e-30
Identities = 66/235 (28%), Positives = 106/235 (45%), Gaps = 31/235 (13%)
Query: 29 LDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLF-----DNLL--EIYPFLINVPRAGIVH 81
L+I+Y+D ++ +NK +GL+VH + + T F + L +YP VH
Sbjct: 1 LEILYQDEHLVAINKPSGLLVHRSELDRHETRFALQTLRDQLGQHVYP----------VH 50
Query: 82 RLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNR 141
RLD+ +SG+++ A S + L Q H V + YLA+V G +G I+ +
Sbjct: 51 RLDRPTSGVLLFALSSEVARKLGEQFTEHRVHKTYLAVVRGYVPESGTIDYPLSEELDKL 110
Query: 142 IKMTVSKNFNAKPALTYYERLATG---IINKKH----ISLIRCNLKTGRTHQIRVHMQWL 194
S + + A T+Y LA ++ K+ SL+ TGR HQ+R H+ +
Sbjct: 111 ADKFASDDKAPQAATTHYRLLAVEELPVVVGKYPTSRYSLVELTPHTGRKHQLRRHLAHI 170
Query: 195 GHGIVGDNLYGKK-----YSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDD 244
H I+GD +G + + +R L A +L HP +L I P D
Sbjct: 171 RHPIIGDTTHGDGRHNRFFREHFGCHRLLLAATRLEFTHPVTGERLL--IEAPLD 223
|
Pseudouridine synthases catalyze the isomerization of specific uridines in an tRNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. TruC makes psi65 in tRNAs. This psi residue is not universally conserved. Length = 223 |
| >gnl|CDD|182909 PRK11025, PRK11025, 23S rRNA pseudouridylate synthase C; Provisional | Back alignment and domain information |
|---|
Score = 120 bits (302), Expect = 1e-29
Identities = 81/233 (34%), Positives = 120/233 (51%), Gaps = 29/233 (12%)
Query: 25 KVIKLD--IIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYP---FLINVPRAGI 79
KV L I+YED+ I++LNK +G VH G LS + + L + P FL +
Sbjct: 87 KVAALADVILYEDDHILVLNKPSGTAVHGGSG-LSFGVIEGLRALRPEARFL------EL 139
Query: 80 VHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG-IPKLNGMINAAIMRNP 138
VHRLD+++SG+++VAK + L QL+ +Q+ YLA+V G ++ A +++N
Sbjct: 140 VHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKVVQAPLLKNI 199
Query: 139 HNRIKMTVSKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLG 195
+ V + KP+ T + ER A +L+R + TGRTHQIRVH Q+ G
Sbjct: 200 LQSGERIVRVSQEGKPSETRFKVEERYA-------FATLVRASPVTGRTHQIRVHTQYAG 252
Query: 196 HGIVGDNLYG-KKYSKSLI---FNRQALHAYKLGLIHPKNNLKLKWRINLPDD 244
H I D+ YG +++ + L NR LHA L HP + RI P D
Sbjct: 253 HPIAFDDRYGDREFDQQLTGTGLNRLFLHAAALKFTHPGTGEVM--RIEAPLD 303
|
Length = 317 |
| >gnl|CDD|219245 pfam06968, BATS, Biotin and Thiamin Synthesis associated domain | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 3e-29
Identities = 37/92 (40%), Positives = 53/92 (57%)
Query: 859 PINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLA 918
PIN L I+GTPL L E ++TIA R+ +P + IR+S GR+ + Q F++
Sbjct: 1 PINFLRPIEGTPLEDQPPLSDEEALKTIAAFRLLLPDAGIRLSGGREALLRDLQGLAFMS 60
Query: 919 GANSIFYGDKLLTTDNTKTNDDSKLLKKLGIN 950
GANS F G L T+ N ++D +LK LG+
Sbjct: 61 GANSTFVGGYLTTSGNRSPDEDIAMLKDLGLE 92
|
Biotin synthase (BioB), EC:2.8.1.6, catalyzes the last step of the biotin biosynthetic pathway. The reaction consists in the introduction of a sulphur atom into dethiobiotin. BioB functions as a homodimer. Thiamin synthesis if a complex process involving at least six gene products (ThiFSGH, ThiI and ThiJ). Two of the proteins required for the biosynthesis of the thiazole moiety of thiamine (vitamin B(1)) are ThiG and ThiH (this family) and form a heterodimer. Both of these reactions are thought of involve the binding of co-factors, and both function as dimers. This domain therefore may be involved in co-factor binding or dimerisation (Finn, RD personal observation). Length = 93 |
| >gnl|CDD|168145 PRK05639, PRK05639, 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 120 bits (301), Expect = 1e-28
Identities = 101/380 (26%), Positives = 191/380 (50%), Gaps = 37/380 (9%)
Query: 269 GHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVE 328
G+S+ + KA++ Q+ ++H M+ + I+++EKL+ ++ + +G G+ AV+
Sbjct: 68 GYSHPKLVKAVQEQVALIQHSMIGYTHSERAIRVAEKLAEISPIENPKVLFGLSGSDAVD 127
Query: 329 VALKMSFHYWYNKGFLNKKKFI-CLQNSYHGETLGALAVTNIQ-SFKEIYTSLLNKTYII 386
+A+K+S F ++ +I +YHG+TLGA +V Q S K ++ L+ I
Sbjct: 128 MAIKVS-------KFSTRRPWILAFIGAYHGQTLGATSVAAFQSSQKRGFSPLMPNVVWI 180
Query: 387 TTPDS-RN---INKGNSANEIARCAIFDLEILLKKN---HNKIAAIIIEPLVQCAGGMIM 439
P+ RN IN +E+ + LE + + +++AA+ EP +Q G+++
Sbjct: 181 PYPNPYRNPWGINGYEEPDELINRFLDYLENYVFSHVVPPDEVAALFAEP-IQGDAGIVV 239
Query: 440 YDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLP 499
+ K ++++ + + I L+ DE+ G GRTGK+FA E E+ PD + KG+ G +
Sbjct: 240 PPENFFKELKKLLDEHGILLVMDEVQTGIGRTGKWFASEWFEVKPDLIIFGKGVASG-MG 298
Query: 500 LSLVMTTDKIYNSIYYKNNINIFLHSHSY----SGNPLACCAALATLEIFNKDNILQRIS 555
LS V+ ++ + L S S + NP+ AA ATLEI ++N+L+
Sbjct: 299 LSGVIGRKELMD-----------LTSGSALLTPAANPVISAAAEATLEIIEEENLLKNAL 347
Query: 556 QDMKKITKALTSLITHPKII-NFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLL 614
+ + I K L + ++I + R KG++ +++ E+ + + K A + L+L
Sbjct: 348 KVGEFIKKRLLEMKESFEVIGDVRGKGLMIGVEIVKENGKPDPELTGKICWRAFELGLIL 407
Query: 615 RP---IGNTVYLMPPYILNK 631
GN + + PP ++ K
Sbjct: 408 PSYGMFGNVIRITPPLVITK 427
|
Length = 457 |
| >gnl|CDD|179868 PRK04612, argD, acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Score = 119 bits (299), Expect = 1e-28
Identities = 81/318 (25%), Positives = 144/318 (45%), Gaps = 32/318 (10%)
Query: 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTH-KPVIKLSEKLSSLTQ 311
G+ YLD + V GH++ + AL Q KL H SN+ + P +KL+E+L + ++
Sbjct: 39 GREYLDLAAGIAVCGLGHNDPDLVAALTEQAGKLWHT--SNVFYSAPPLKLAEELVTASR 96
Query: 312 YKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFI-CLQNSYHGETLGALAVTNIQ 370
+ F + G A E A+K+ + ++G K+ I + S+HG TL A+ T
Sbjct: 97 FA-EKVFLCNSGTEANEAAIKLVRKWASSQGRPADKRVIVTFRGSFHGRTLAAVTATAQP 155
Query: 371 SFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPL 430
++E Y L + D + + + +AA+++EP
Sbjct: 156 KYQEGYEPLPGGFRYVDFNDVEALEAAMAGGD-------------------VAAVMLEP- 195
Query: 431 VQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS 490
+Q GG++ +L VR +C+ ++ L+ DEI G GRTG FA ++ PD + L+
Sbjct: 196 IQGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQCGMGRTGTLFAHWQEQVTPDIVTLA 255
Query: 491 KGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNI 550
K + GG+ P+ ++ K+ ++ + H ++ GNPLA A L I
Sbjct: 256 KALGGGF-PIGAMLAGPKVAETMQFG------AHGTTFGGNPLAAAVARVALRKLASPQI 308
Query: 551 LQRISQDMKKITKALTSL 568
+++ + L +L
Sbjct: 309 AANVARQSAALRAGLEAL 326
|
Length = 408 |
| >gnl|CDD|235892 PRK06938, PRK06938, diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 116 bits (292), Expect = 3e-27
Identities = 85/284 (29%), Positives = 135/284 (47%), Gaps = 27/284 (9%)
Query: 318 FYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYT 377
F G G AVE ALK+ K + + Q YHG + GAL++ K+
Sbjct: 131 FCGPTGTDAVEAALKLV------KTATGRSTVLSFQGGYHGMSQGALSLMGNLGPKKPLG 184
Query: 378 SLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKI---AAIIIEPLVQCA 434
+LL + P G R + LE LL + + AA+I+E +VQ
Sbjct: 185 ALLPGVQFLPYPYDYRCPFGLGGEAGVRANLHYLENLLDDPESGVVLPAAVILE-VVQGE 243
Query: 435 GGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGIT 494
GG+I +L+ +R I I LI DEI G GRTGK FA EHA I PD + LSK I
Sbjct: 244 GGVIPAPIEWLRGLRRITEEAGIPLIVDEIQSGFGRTGKMFAFEHAGIIPDVVVLSKAI- 302
Query: 495 GGYLPLSLVMTTDKIYNSIYYKNNINIFL---HSHSYSGNPLACCAALATLEIFNKDNIL 551
GG LPL++V+ Y+ ++ + H+ ++ GN +A A ATL + +
Sbjct: 303 GGSLPLAVVV----------YREWLDTWQPGAHAGTFRGNQMAMAAGSATLRYIKEHRLA 352
Query: 552 QRISQDMKKITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDPE 594
+ + +++ + L L +P++ + R +G++ +++ DP+
Sbjct: 353 EHAAAMGERLREHLRQLQRDYPQLGDVRGRGLMLGVEIV--DPQ 394
|
Length = 464 |
| >gnl|CDD|214792 smart00729, Elp3, Elongator protein 3, MiaB family, Radical SAM | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 5e-27
Identities = 42/222 (18%), Positives = 79/222 (35%), Gaps = 21/222 (9%)
Query: 683 VLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGA-----TRFCM 737
+ L I T GC C +C + + +E+++ + G +
Sbjct: 2 LALYIITRGCPRRCTFCSFPSLRGKL----RSRYLEALVREIELLAEKGEKEGLVGTVFI 57
Query: 738 GAAWRELKDRD-----LDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYNHN 792
G L + L+ I ++ K + + L E LK+ G++ +
Sbjct: 58 GGGTPTLLSPEQLEELLEAIREILGLAKDVEITIETRPDTLTEELLEALKEAGVNRVSLG 117
Query: 793 LDT-SPKLYGDIISTRDYENRLNTLKNVRNVG-INICCGGIIGLS-ESRDQRAELIFQLA 849
+ + ++ I E+ L ++ +R G I + I+GL E+ + E + L
Sbjct: 118 VQSGDDEVLKAINRGHTVEDVLEAVELLREAGPIKVSTDLIVGLPGETEEDFEETLKLLK 177
Query: 850 NLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARI 891
L P+ V I L GTPL + L+ A +
Sbjct: 178 ELG--PDRVSIFPLSPRPGTPLA--KMYKRLKPPTKEERAEL 215
|
This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases. Length = 216 |
| >gnl|CDD|211325 cd02550, PseudoU_synth_Rsu_Rlu_like, Pseudouridine synthase, Rsu/Rlu family | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 6e-26
Identities = 41/163 (25%), Positives = 65/163 (39%), Gaps = 17/163 (10%)
Query: 38 IIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSI 97
I++LNK +GLV HP + T+ ++ PR RLDK++SGL+++
Sbjct: 1 ILVLNKPSGLVCHPTDRDRDPTVVV-----RLDKLHGPRVHAAGRLDKDTSGLLLLTNDG 55
Query: 98 KSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTVS-KNFNAKPAL 156
+ L ++++YL V G I R + A+
Sbjct: 56 RLQRRLTEP--RREIEKEYLVTVRGELD-----EEGIEDLATVRRGRLSGLVDEGVPLAV 108
Query: 157 TYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIV 199
T + +R LKTGRTHQIR H +G ++
Sbjct: 109 TKVRVIGEHGGT----GRLRLTLKTGRTHQIRRHCAAVGFPVL 147
|
This group is comprised of eukaryotic, bacterial and archeal proteins similar to eight site specific Escherichia coli pseudouridine synthases: RsuA, RluA, RluB, RluC, RluD, RluE, RluF and TruA. Pseudouridine synthases catalyze the isomerization of specific uridines in a n RNA molecule to pseudouridines (5-ribosyluracil, psi) requiring no cofactors. E. coli RluC for example makes psi955, 2504 and 2580 in 23S RNA. Some psi sites such as psi1917 in 23S RNA made by RluD are universally conserved. Other psi sites occur in a more restricted fashion, for example psi2819 in 21S mitochondrial ribosomal RNA made by S. cerevisiae Pus5p is only found in mitochondrial large subunit rRNAs from some other species and in gram negative bacteria. The E. coli counterpart of this psi residue is psi2580 in 23S rRNA. psi2604in 23S RNA made by RluF has only been detected in E.coli. Length = 154 |
| >gnl|CDD|236659 PRK10158, PRK10158, 23S rRNA/tRNA pseudouridine synthase A; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (260), Expect = 3e-25
Identities = 67/211 (31%), Positives = 108/211 (51%), Gaps = 11/211 (5%)
Query: 29 LDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSS 88
L I+Y+D I+++NK +GL+ P G L + I + P+A VHRLD +S
Sbjct: 14 LVILYQDEHIMVVNKPSGLLSVP--GRLEEHKDSVMTRIQR---DYPQAESVHRLDMATS 68
Query: 89 GLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIP-KLNGMINAAIMRNPHNRIKMTVS 147
G++VVA + + L Q + +++Y+A VWG P G+++ ++ + NR K V
Sbjct: 69 GVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVC 128
Query: 148 KNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGKK 207
KPA T YE + + + + TGR+HQ+RVHM LGH I+GD Y
Sbjct: 129 YE-TGKPAQTEYEVVEYA---ADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASP 184
Query: 208 YSKSLIFNRQALHAYKLGLIHPKNNLKLKWR 238
++++ R LHA L + HP + ++
Sbjct: 185 EARAMA-PRLLLHAEMLTITHPAYGNSMTFK 214
|
Length = 219 |
| >gnl|CDD|182971 PRK11112, PRK11112, tRNA pseudouridine synthase C; Provisional | Back alignment and domain information |
|---|
Score = 99.0 bits (247), Expect = 6e-23
Identities = 67/243 (27%), Positives = 116/243 (47%), Gaps = 33/243 (13%)
Query: 29 LDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLF------DNLLE-IYPFLINVPRAGIVH 81
L+I+Y+D ++ +NK AG +VH + + T+F D + + ++ H
Sbjct: 2 LEILYQDEWLVAVNKPAGWLVHRSWLDRHETVFVMQTVRDQIGQHVFT----------AH 51
Query: 82 RLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNR 141
RLD+ +SG++++A S + L Q + H +Q+ Y A+V G +++ + ++
Sbjct: 52 RLDRPTSGVLLMALSSEVARLLAQQFEQHQIQKTYHAIVRGWLMEEAVLDYPLKEE-LDK 110
Query: 142 I--KMTVSKNFNAKPALTYYERLAT-------GIINKKHISLIRCNLKTGRTHQIRVHMQ 192
I K ++ +PA+T+Y LAT G SL+ KTGR HQ+R HM
Sbjct: 111 IADKFA-REDKAPQPAVTHYRGLATVEMPVATGRYPTTRYSLVELEPKTGRKHQLRRHMA 169
Query: 193 WLGHGIVGDNLYG-----KKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISK 247
L H I+GD +G + ++ +R LHA +L L HP L L + +
Sbjct: 170 HLRHPIIGDTKHGDLRQNRSLAEHFGCSRLMLHASELSLTHPFTGEPLTITAGLDETWQQ 229
Query: 248 LIT 250
L++
Sbjct: 230 LLS 232
|
Length = 257 |
| >gnl|CDD|130682 TIGR01621, RluA-like, pseudouridine synthase Rlu family protein, TIGR01621 | Back alignment and domain information |
|---|
Score = 94.2 bits (234), Expect = 1e-21
Identities = 55/197 (27%), Positives = 94/197 (47%), Gaps = 18/197 (9%)
Query: 29 LDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSS 88
+I++ + +++NK G+ VH G LL+ + V + +VHRLDK +S
Sbjct: 2 FEILFTHPDFLLINKHPGISVHKDDGE------TGLLQEVATQLGVGQVWLVHRLDKMTS 55
Query: 89 GLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIP-KLNGMINAAIMRNPHNRIKMTVS 147
G++++A + +S L +++ YLA+ P K G+I + ++ K+ S
Sbjct: 56 GILLLALNAESASELSQGFAKRKIEKTYLALSSKKPKKKQGLICGDMEKSRRGSWKLVNS 115
Query: 148 KNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGKK 207
+ PA+T + + + L TG+THQ+RV M+ LG I+GD LYG
Sbjct: 116 QE---NPAITRFFSASA----ATGLRLFILKPHTGKTHQLRVAMKSLGSPILGDPLYGTT 168
Query: 208 YSKSLIFNRQALHAYKL 224
+R LHA+ L
Sbjct: 169 DES----DRGYLHAFAL 181
|
This model represents a clade of sequences within the pseudouridine synthase superfamily (pfam00849). The superfamily includes E. coli proteins: RluA, RluB, RluC, RluD, and RsuA. The sequences modeled here are most closely related to RluA. Neisseria, among those species hitting this model, does not appear to have an RluA homolog. It is presumed that these sequences function as pseudouridine synthases, although perhaps with different specificity [Protein synthesis, tRNA and rRNA base modification]. Length = 217 |
| >gnl|CDD|223080 COG0001, HemL, Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 92.6 bits (231), Expect = 1e-19
Identities = 75/349 (21%), Positives = 139/349 (39%), Gaps = 73/349 (20%)
Query: 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEK 305
+ L G Y+D + W + GH++ + +A++ QL + + + ++L+E
Sbjct: 45 AYLTDVDGNEYIDYVLGWGPLILGHAHPAVVEAVQEQLERG---LSFGAPTELEVELAEL 101
Query: 306 LSSLTQ--YKLGHCFYGSDGA--SAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETL 361
L K+ G++ A SA+ +A + + + K I + YHG +
Sbjct: 102 LIERVPSIEKVRFVNSGTE-ATMSAIRLA----------RAYTGRDKIIKFEGCYHGHSD 150
Query: 362 GAL-------AVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEIL 414
L A S + + T + P N++ LE
Sbjct: 151 SLLVKAGSGAATLGSPSSPGVPADVAKHT--LVLP----------YNDLE-----ALEEA 193
Query: 415 LKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADE------IAVGC 468
++ + IAA+I+EP V G++ + +L+ +RE+ + LI DE +A+G
Sbjct: 194 FEEYGDDIAAVIVEP-VAGNMGVVPPEPGFLEGLRELTEEHGALLIFDEVITGFRVALGG 252
Query: 469 GRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYN------SIYYKNNINIF 522
A + + PD L K I GG LP+ +I +Y
Sbjct: 253 -------AQGYYGVEPDLTTLGKIIGGG-LPIGAFGGRAEIMEQLAPLGPVY-------- 296
Query: 523 LHSHSYSGNPLACCAALATLE-IFNKDNILQRISQDMKKITKALTSLIT 570
+ + SGNPLA A LATLE + ++ + +R+ +++ + L +
Sbjct: 297 -QAGTLSGNPLAMAAGLATLEELMTEEGVYERLDALGERLAEGLRAAAE 344
|
Length = 432 |
| >gnl|CDD|180426 PRK06148, PRK06148, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 92.0 bits (229), Expect = 7e-19
Identities = 82/339 (24%), Positives = 145/339 (42%), Gaps = 65/339 (19%)
Query: 237 WRINLPDDISKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSN--L 294
W + L D+ G+ YLD ++ V GH++ + A Q +L +N
Sbjct: 614 WGVWLIDN-------RGRAYLDCFNN--VCHVGHAHPRVVAAAARQAARLN----TNTRY 660
Query: 295 THKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQN 354
H ++ +E+L++ L F+ + G+ A +AL+++ + + I L +
Sbjct: 661 LHDAIVAYAERLTATLPDGLTVAFFVNSGSEANSLALRLARAHTGQRDA------IVLDH 714
Query: 355 SYHGETLGALAVTNIQSFKEIYTSLLNK---------TYIITTPDSRNINKGNSANEIAR 405
+YHG T + + +K N+ + PDS + E R
Sbjct: 715 AYHGTTTELID---LSPYK------FNRKGGKGRPDHVEVAEVPDSYRGPERWPDAEHGR 765
Query: 406 --CAIFDLEI-LLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLK----LVRE---ICNNY 455
+I + A I E + AG + + + YL+ +VR +C
Sbjct: 766 RFAESVAEQIAAMAAKGRGPAFFIAESIPSVAGQIFLPEG-YLREVYAMVRAAGGVC--- 821
Query: 456 NIHLIADEIAVGCGRTGK-FFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIY 514
IADE+ VG GR G ++A E + PD + + K I G+ P+ V+TT +I +S
Sbjct: 822 ----IADEVQVGFGRVGSHWWAFETQGVVPDIVTMGKPIGNGH-PMGAVVTTREIADS-- 874
Query: 515 YKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQR 553
+ N + F +++ GNP++C LA L+I ++ LQR
Sbjct: 875 FDNGMEYF---NTFGGNPVSCAIGLAVLDIIEDED-LQR 909
|
Length = 1013 |
| >gnl|CDD|236224 PRK08297, PRK08297, L-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 88.5 bits (220), Expect = 3e-18
Identities = 80/357 (22%), Positives = 140/357 (39%), Gaps = 60/357 (16%)
Query: 314 LGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKK------KFICLQNSYHGETLGALAVT 367
L H F+ GA AVE ALK++F + K K + L+ ++HG + L++T
Sbjct: 110 LPHLFFVDGGALAVENALKVAFDWKSRKNEARGIDPALGTKVLHLRGAFHGRSGYTLSLT 169
Query: 368 NIQSFKEIYTSLLNKT-YI-------ITTPDSRNINKGNSANEIA---RCAIFDLEILLK 416
N KT I P R G E+ A+ +
Sbjct: 170 NTDP---------RKTARFPKFDWPRIDNPKLRFPLPGEDLEEVEALEAEALAQARAAFE 220
Query: 417 KNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFA 476
++ + IA I EP +Q GG + + +RE+C+ ++ LI DE+ G G TG +A
Sbjct: 221 RHPHDIACFIAEP-IQGEGGDNHFRPEFFAAMRELCDEHDALLIFDEVQTGVGLTGTAWA 279
Query: 477 CEHAEIWPDFLCLSK-----GITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHS----HS 527
+ + PD + K GI G D++ + N+F S +
Sbjct: 280 YQQLGVRPDIVAFGKKTQVCGIMAG-------RRVDEVED--------NVFAVSSRINST 324
Query: 528 YSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLIT-HPKII-NFRQKGMIWA 585
+ GN + A LE+ +D +++ ++ + + L L P ++ N R +G++ A
Sbjct: 325 WGGNLVDMVRARRILEVIEEDGLVENAARQGEYLLARLEELAAEFPAVVSNVRGRGLMCA 384
Query: 586 FDVIIEDPEQIETFSKKFFVAALKNELLLRPIGN-TVYLMPPYILNKNEIQHMTSAI 641
FD+ + + +L+ P G ++ P + EI A+
Sbjct: 385 FDL--PTTAD----RDEVIRRLWEEGVLVLPCGERSIRFRPALTVTTEEIDAAIDAL 435
|
Length = 443 |
| >gnl|CDD|132295 TIGR03251, LAT_fam, L-lysine 6-transaminase | Back alignment and domain information |
|---|
Score = 88.3 bits (219), Expect = 3e-18
Identities = 78/348 (22%), Positives = 143/348 (41%), Gaps = 42/348 (12%)
Query: 314 LGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKK---------KFICLQNSYHGETLGAL 364
L H F+ GA AVE ALK +F + K N+ + + L+ ++HG + L
Sbjct: 103 LPHLFFIEGGALAVENALKTAFDW---KSRHNQARGIPAALGTQVLHLRQAFHGRSGYTL 159
Query: 365 AVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIA--RCAIFDLEILLKKNHNKI 422
++TN K + I + ++ N IA A+ + + I
Sbjct: 160 SLTNTDPRKTARFPKFDWPRIDNPKLTFPLDAPNLDQVIALEEEALRQARAAFAERPHDI 219
Query: 423 AAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEI 482
A I EP +Q GG + +L+ +R +C+ ++ LI DE+ G G TG +A + +
Sbjct: 220 ACFIAEP-IQGEGGDNHFRPEFLRAMRALCDEHDALLIFDEVQTGVGLTGTAWAYQQLGV 278
Query: 483 WPDFLCLSK-----GITGGYLPLSLVMTTDKIYNSIY-YKNNINIFLHSHSYSGNPLACC 536
PD + K GI G D++ ++++ + +N ++ GN +
Sbjct: 279 QPDIVAFGKKTQVCGIMAG-------RRVDEVADNVFAVPSRLN-----STWGGNLVDMV 326
Query: 537 AALATLEIFNKDNILQRISQDMKKITKALTSLIT-HPKII-NFRQKGMIWAFDVIIEDPE 594
A LEI ++ ++ + L L P ++ N R +G++ AFD +
Sbjct: 327 RATRILEIIEEERLVDNARVQGAHLLARLHELAAEFPHLVSNPRGRGLMCAFD--LPSTA 384
Query: 595 QIETFSKKFFVAALKNELLLRPIGN-TVYLMPPYILNKNEIQHMTSAI 641
+ ++ + + +LL G ++ PP + + EI AI
Sbjct: 385 DRDEVIRQLY----REGVLLLGCGERSIRFRPPLTVTREEIDAAIDAI 428
|
Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites. Length = 431 |
| >gnl|CDD|233100 TIGR00713, hemL, glutamate-1-semialdehyde-2,1-aminomutase | Back alignment and domain information |
|---|
Score = 87.4 bits (217), Expect = 5e-18
Identities = 92/408 (22%), Positives = 158/408 (38%), Gaps = 92/408 (22%)
Query: 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEK 305
+ L G Y+D + SW + GH++ + +A+K L E + I L+++
Sbjct: 40 AYLYDVDGNEYIDYVLSWGPLILGHAHPRVVEAVKEAL---ERGTSYGAPTEAEILLAKE 96
Query: 306 LSSL--TQYKLGHCFYGSDGA-SAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLG 362
+ S + + G++ SAV +A +G+ + K I + YHG
Sbjct: 97 IISRVPSVEMVRFVNSGTEATMSAVRLA----------RGYTGRDKIIKFEGCYHGH--- 143
Query: 363 ALAVTNIQSFKEIYTSLLNK------TYIITTPDSRNINKGNSANEIARCAIFDLEIL-- 414
+ +LL K T + P S + + + + DLE L
Sbjct: 144 -------------HDALLVKAGSGAATLGL--PTSPGVPEDFAKLTLV-LPYNDLEALEE 187
Query: 415 -LKKNHNKIAAIIIEPLVQCAGGM--IMYDSIYLKLVREICNNYNIHLIADEIAVGCGRT 471
++ +IA +I+EP+ AG M + +L +R + Y LI DE+ G R
Sbjct: 188 VFEEYGEEIAGVIVEPV---AGNMGVVPPKPEFLAGLRALTEEYGSLLIFDEVMTGF-RV 243
Query: 472 GKFFACEHAEIWPDFLCLSKGITGGYLP----------LSLVMTTDKIYNSIYYKNNINI 521
A E+ + PD L K I GG LP + + +Y +
Sbjct: 244 ALGGAQEYFGVEPDLTTLGK-IIGGGLPVGAFGGRREIMERLAPEGPVYQA--------- 293
Query: 522 FLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKI---INFR 578
+ SGNPLA A LATL++ +++ + + + K++ + L+ ++ I +N R
Sbjct: 294 ----GTLSGNPLAMAAGLATLKLLDEEGVYTELDELAKRLAEGLSEVLEDTGIPHTVN-R 348
Query: 579 QKGMIWAFDVIIEDPE----------QIETFSKKFFVAALKNELLLRP 616
M F + + E E F KFF L + L P
Sbjct: 349 VGSM---FSLFFTEEEVTNYADAKKSDTELF-AKFFHEMLDKGVFLPP 392
|
This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 423 |
| >gnl|CDD|235716 PRK06149, PRK06149, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 88.9 bits (221), Expect = 6e-18
Identities = 91/344 (26%), Positives = 163/344 (47%), Gaps = 47/344 (13%)
Query: 248 LITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLS 307
L +G+ YLD +++ V + GH + + A Q + L S + V + SE+L+
Sbjct: 579 LFDMAGRSYLDMVNN--VTVLGHGHPRLAAAAARQWSLLN--TNSRFHYAAVAEFSERLA 634
Query: 308 SLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAV- 366
+L L F + G+ A ++A++++ W G ++ + + +YHG T+ AV
Sbjct: 635 ALAPDGLDTVFLVNSGSEANDLAIRLA---WAASG---RRDVVSVLEAYHGWTVATDAVS 688
Query: 367 TNIQSFKEIYTSLLNKTYIITTPDS-RNINKG-NSANEIARCAIFDLEILLKKNHNKIAA 424
T+I + + + + + +P++ R +G +SA + R + LE L +A
Sbjct: 689 TSIADNPQALETRPDWVHPVESPNTYRGRFRGADSAADYVRDVVAQLEELDASG-RGLAG 747
Query: 425 IIIEPLVQCAGGMIMYDSIYLK----LVRE---ICNNYNIHLIADEIAVGCGRTGKFF-A 476
I EP+ AGG+ + YL+ VR +C IADE+ VG GR G +F
Sbjct: 748 FICEPVYGNAGGIALPPG-YLQQVYAAVRARGGVC-------IADEVQVGYGRLGHYFWG 799
Query: 477 CEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSI----YYKNNINIFLHSHSYSGNP 532
E + PD + ++KG+ G+ PL V+T +I ++ Y+ F S G+P
Sbjct: 800 FEQQGVVPDIITMAKGMGNGH-PLGAVITRREIAEALEAEGYF------F---SSTGGSP 849
Query: 533 LACCAALATLEIFNKDNILQRISQDMKKITKA-LTSLIT-HPKI 574
++C +A L++ ++ LQ ++ + KA L +L HP I
Sbjct: 850 VSCRIGMAVLDVL-REEKLQENARRVGDHLKARLEALADRHPLI 892
|
Length = 972 |
| >gnl|CDD|129782 TIGR00699, GABAtrns_euk, 4-aminobutyrate aminotransferase, eukaryotic type | Back alignment and domain information |
|---|
Score = 81.8 bits (202), Expect = 4e-16
Identities = 89/378 (23%), Positives = 153/378 (40%), Gaps = 70/378 (18%)
Query: 248 LITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVI------- 300
L+ G R LD S G++N + KA ++ M + L ++P +
Sbjct: 52 LVDVDGNRLLDLYSQISSIPIGYNNPALLKAAQSP------EMATTLINRPALGNFPSKD 105
Query: 301 ---KLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNK------GFLNKKKFIC 351
L E + + + G G+ A E+A K +F Y+ +K F ++ C
Sbjct: 106 WAKILKEGILKVAPKGQDQVWTGMSGSDANELAFKAAFMYYRSKQRGYQADFSEEENESC 165
Query: 352 LQN---------------SYHGETLGALAVT--------NIQSFKEIYTSLLNKTYIITT 388
+ N ++HG G+L+ T +I +F + Y
Sbjct: 166 MDNQAPGSPDLSILSFKGAFHGRLFGSLSTTRSKPIHKLDIPAFDWPQAPFPSLKY---- 221
Query: 389 PDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLV 448
P ++ + +A E RC + ++E L+KK H +AAII+EP +Q GG + + +
Sbjct: 222 PLEEHVKE--NAKEEQRC-LEEVEDLIKKWHKPVAAIIVEP-IQSEGGDNHASPDFFRKL 277
Query: 449 REICNNYNIHLIADEIAVGCGRTGKFFACEHAEIW--PDFLCLSKGI-TGGYLPLSLVMT 505
R+I +N+ I DE+ G G TGKF+A EH + PD + SK T GY
Sbjct: 278 RDITKKHNVAFIVDEVQTGVGATGKFWAHEHWNLDDPPDMVTFSKKFQTAGYFFHDPAFR 337
Query: 506 TDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKAL 565
+K Y +++ G+P ++ + ++L+ ++ + L
Sbjct: 338 PNKPYR------------QFNTWMGDPSRALILREIIQEIKRKDLLENVAHVGDYLYTGL 385
Query: 566 TSLIT-HP-KIINFRQKG 581
L +P I N R KG
Sbjct: 386 EDLQKKYPEFIQNLRGKG 403
|
This enzyme is a class III pyridoxal-phosphate-dependent aminotransferase. This model describes known eukaryotic examples of the enzyme. The degree of sequence difference between this set and known bacterial examples is greater than the distance between either set the most similar enzyme with distinct function, and so separate models are built for prokaryotic and eukaryotic sets. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase [Central intermediary metabolism, Other]. Length = 464 |
| >gnl|CDD|217866 pfam04055, Radical_SAM, Radical SAM superfamily | Back alignment and domain information |
|---|
Score = 74.1 bits (182), Expect = 3e-15
Identities = 41/165 (24%), Positives = 66/165 (40%), Gaps = 10/165 (6%)
Query: 687 IKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMG----AAWR 742
I T GC C YC + + LS E ++ A++ G +
Sbjct: 2 IVTRGCNLRCTYCAFPSIRARG--KGRELSPEEILEEAKELARLGVEVVILTGGEPLLLP 59
Query: 743 ELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGD 802
+L + ++ E +I LET TL L+E LK+ GLD + +L +
Sbjct: 60 DLVELLERLLKLREGEGIRITLETNGTL--LDEELLEELKEAGLDRVSISLQSGDDEVLK 117
Query: 803 II-STRDYENRLNTLKNVRNVGINICCGGIIGLS-ESRDQRAELI 845
II +E L L+ +R GI + I+GL E+ + E +
Sbjct: 118 IINRGHTFEEVLEALELLREAGIPVVVDNIVGLPGENDEDLEETL 162
|
Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerisation, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Length = 165 |
| >gnl|CDD|178100 PLN02482, PLN02482, glutamate-1-semialdehyde 2,1-aminomutase | Back alignment and domain information |
|---|
Score = 75.2 bits (185), Expect = 5e-14
Identities = 85/335 (25%), Positives = 138/335 (41%), Gaps = 66/335 (19%)
Query: 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEH----VMLSNLTHKPVIKLSEKLSS 308
G Y+D + SW + GH++ + AL + K +L N+ + VI + S
Sbjct: 98 GNEYIDYVGSWGPAIIGHADDEVLAALAETMKKGTSFGAPCLLENVLAEMVID---AVPS 154
Query: 309 LTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTN 368
+ + F S G A L+++ + + ++K I + YHG L
Sbjct: 155 VEMVR----FVNS-GTEACMGVLRLA------RAYTGREKIIKFEGCYHGHADSFL---- 199
Query: 369 IQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIF-DLEI---LLKKNHNKIAA 424
+++ + T L PDS + K ++ + A + DLE L + N +IAA
Sbjct: 200 VKAGSGVATLGL--------PDSPGVPKAATSATL--TAPYNDLEAVKKLFEANKGEIAA 249
Query: 425 IIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWP 484
+I+EP+V + G I+ +L+ +REI L+ DE+ G R A E+ I P
Sbjct: 250 VILEPVVGNS-GFIVPKKEFLEGLREITKENGALLVFDEVMTGF-RIAYGGAQEYFGITP 307
Query: 485 DFLCLSKGITGGYLP----------LSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLA 534
D L K I GG LP + +V +Y + + SGNPLA
Sbjct: 308 DLTTLGKVIGGG-LPVGAYGGRREIMEMVAPAGPMY-------------QAGTLSGNPLA 353
Query: 535 CCAALATLEIFNKDNILQRISQDMKKITKALTSLI 569
A + TL+ + + + KITK L I
Sbjct: 354 MTAGIHTLKRLQQPGTYEY----LDKITKKLIQGI 384
|
Length = 474 |
| >gnl|CDD|234607 PRK00062, PRK00062, glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 74.3 bits (184), Expect = 9e-14
Identities = 63/238 (26%), Positives = 97/238 (40%), Gaps = 53/238 (22%)
Query: 411 LEILLKKNHNKIAAIIIEPLVQCAG--GMIMYDSIYLKLVREICNNYNIHLIADEIAVGC 468
+E L ++ ++IAA+I+EP AG G++ +L+ +RE+C+ + LI DE V
Sbjct: 187 VEELFEEYGDEIAAVIVEP---VAGNMGVVPPKPGFLEGLRELCDEHGALLIFDE--VMT 241
Query: 469 G-RTGKFFACEHAEIWPDFLCLSKGITGGYLPL----------SLVMTTDKIYNSIYYKN 517
G R A + + PD L K I GG LP+ + +Y
Sbjct: 242 GFRVALGGAQGYYGVTPDLTTLGK-IIGGGLPVGAFGGRREIMEQLAPLGPVYQ------ 294
Query: 518 NINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLIT---HPKI 574
+ + SGNPLA A LATL++ + + + K++ + L P
Sbjct: 295 -------AGTLSGNPLAMAAGLATLKLLKEPGFYEELEALTKRLAEGLKEAAKKAGIPLT 347
Query: 575 INFRQKGMIWAF--DVIIEDPEQ-----IETFSKKFFVAALKNELLLRPIGNTVYLMP 625
+N R M F D + + E F +FF A L G VYL P
Sbjct: 348 VN-RVGSMFGLFFTDEPVTNYADAKKSDTERF-ARFFHAMLDE-------G--VYLAP 394
|
Length = 426 |
| >gnl|CDD|100105 cd01335, Radical_SAM, Radical SAM superfamily | Back alignment and domain information |
|---|
Score = 67.4 bits (164), Expect = 2e-12
Identities = 54/208 (25%), Positives = 88/208 (42%), Gaps = 15/208 (7%)
Query: 689 TGGCTEDCGYC--PQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKD 746
T GC +CG+C P S E IE ++ +AK G + L
Sbjct: 4 TRGCNLNCGFCSNPASKGRGPES----PPEIEEILDIVLEAKERGVEVVILTGGEPLLYP 59
Query: 747 RDLDNIENMI--CEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDII 804
+ + + +I +ET +L E LK++GLD +LD+ + D I
Sbjct: 60 ELAELLRRLKKELPGFEISIET--NGTLLTEELLKELKELGLDGVGVSLDSGDEEVADKI 117
Query: 805 --STRDYENRLNTLKNVRNVGINICCGGIIGLS-ESRDQRAELIFQLANLNPYPESVPIN 861
S ++ RL LK +R G+ + ++GL E + E + LA P+ V +
Sbjct: 118 RGSGESFKERLEALKELREAGLGLSTTLLVGLGDEDEEDDLEELELLAEFRS-PDRVSLF 176
Query: 862 NLVQIKGTPLYGSSILDPLE-FIRTIAV 888
L+ +GTPL ++ + P E +R IA
Sbjct: 177 RLLPEEGTPLELAAPVVPAEKLLRLIAA 204
|
Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme of the biosynthesis of molybdopterin. Length = 204 |
| >gnl|CDD|188472 TIGR03957, rSAM_HmdB, 5,10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdB | Back alignment and domain information |
|---|
Score = 63.3 bits (154), Expect = 1e-10
Identities = 72/296 (24%), Positives = 112/296 (37%), Gaps = 42/296 (14%)
Query: 649 DEVINLFN-------LPFNDLLFRAQKVHRKYFDANEIELAVLLSIKTGGC--TEDCGYC 699
DE + LF L D+ R + R +I+L + I T C C YC
Sbjct: 4 DEALKLFKSDNSRDLLKLFDIASRVRDYFRG-----KIKLTSTIHI-TNICHVRPKCLYC 57
Query: 700 -----PQSTHYNTEITATKILSIESVITAAQKAKSDGATRF-CMGAAWRELKDRDLDNIE 753
Y T E + AA+ + G R C GA +
Sbjct: 58 GFAAGTSKEGYYEPFRKTD----EEIKEAAKAIEESGIPRVSCSGAHG--------YGGK 105
Query: 754 NMICEVKKIGLETCLTLGM-----LNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTR 807
+ + + T L L + L E L + G D NL+T + +L+ +
Sbjct: 106 EAVRAARIVKENTSLELLINVGADLTEESIEELARYGTDTICCNLETTNEELFKKLKPGE 165
Query: 808 DYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIK 867
+ E+R+ + V GI + G +IG+ ES + R E + L E +PI
Sbjct: 166 ELEDRIRVCEMVCKYGIELSSGLLIGIGESYEDRLEHLKFLKRFENLGE-IPIMGFNPYP 224
Query: 868 GTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSI 923
GTP+ LE +TIAV R+ P IR++ +G F +AGA+++
Sbjct: 225 GTPMENHPPCSLLEQAKTIAVTRLMYPD--IRITVPTPTIGPENVQFALMAGADNV 278
|
Members of this archaeal protein family are HmdB, a partially characterized radical SAM protein with an unusual CX5CX2C motif. Its gene flanks the H2-forming methylene-H4-methanopterin dehydrogenase gene hmdA, found in hydrogenotrophic methanogens. HmdB appears to act in in biosynthesis of the novel cofactor of HmdA [Protein fate, Protein modification and repair, Energy metabolism, Methanogenesis]. Length = 317 |
| >gnl|CDD|234803 PRK00615, PRK00615, glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 1e-09
Identities = 74/308 (24%), Positives = 129/308 (41%), Gaps = 33/308 (10%)
Query: 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSS---L 309
GK ++D SW + GHS+ I A++ E LT + I +E+L S L
Sbjct: 52 GKTFIDFCGSWGSLIHGHSHPKICDAIQ---QGAERGTSYGLTSEQEILFAEELFSYLGL 108
Query: 310 TQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNI 369
+K+ + S G A A++++ +G + I YHG A T +
Sbjct: 109 EDHKIR---FVSSGTEATMTAVRLA------RGITGRSIIIKFLGCYHGH-----ADTLL 154
Query: 370 QSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEP 429
Q TSL T+++ T + + N+ IF ++ H ++A +I EP
Sbjct: 155 QGISFSETSLDTLTHLVDTDLAHPLTLSLPYNDF---QIF-QTVMNSLGH-RVAGVIFEP 209
Query: 430 LVQCAG-GMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLC 488
+ CA G+++ +++ + + C I DE+ G R + A + PD
Sbjct: 210 I--CANMGVVLPKPGFIEGIIQTCRRTGSLSIMDEVVTGF-RVAQGGAAAIYHVKPDITV 266
Query: 489 LSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKD 548
K I GG LP + V+ I + + + I + + SGNPLA A A++ + +
Sbjct: 267 YGK-ILGGGLPAAAVVAHKSIMDHLAPEGTI---FQAGTLSGNPLAMAAGKASINLCREQ 322
Query: 549 NILQRISQ 556
++S
Sbjct: 323 GFYTQLST 330
|
Length = 433 |
| >gnl|CDD|211332 cd02558, PSRA_1, Pseudouridine synthase, a subgroup of the RluA family | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 6e-09
Identities = 50/187 (26%), Positives = 82/187 (43%), Gaps = 35/187 (18%)
Query: 31 IIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNL---LEIYPFLINVPRAGIVHRLDKNS 87
I+++D +++ +K L V P ++ TL L P L P HRLD+ +
Sbjct: 41 ILHQDEHLLVADKPHFLPVTPRGRYVTETLLVRLRRQTGN-PDL--TP----AHRLDRLT 93
Query: 88 SGLMVVAKSIKS---YIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKM 144
+GL++ +K ++ Y L + V + Y A+ +P L +R+ ++
Sbjct: 94 AGLVLFSKRPETRGAYQTLFAR---REVSKTYEAVAPYVPALTF---PLTVRS-----RI 142
Query: 145 TVSKNF------NAKP-ALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHG 197
+ F +P A T E LA + L R + TG+THQ+RVHM LG
Sbjct: 143 VKGRGFFQAREVEGEPNAETRIELLA----RRGGWGLYRLSPHTGKTHQLRVHMAALGVP 198
Query: 198 IVGDNLY 204
I+ D Y
Sbjct: 199 ILNDPFY 205
|
This group is comprised of bacterial proteins assigned to the RluA family of pseudouridine synthases. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. The RluA family is comprised of proteins related to Escherichia coli RluA. Length = 246 |
| >gnl|CDD|183493 PRK12389, PRK12389, glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 8e-09
Identities = 88/414 (21%), Positives = 157/414 (37%), Gaps = 118/414 (28%)
Query: 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQL---------NKLEHVMLSNLTHKPVIKLS 303
G +Y+D ++++ + GH++ +I KA+ +LE + + L
Sbjct: 52 GNKYIDYLAAYGPIITGHAHPHITKAITEAAENGVLYGTPTELE-IEFAK-------MLK 103
Query: 304 EKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGE---- 359
E + SL + + F S G AV ++++ + + + K I YHG
Sbjct: 104 EAIPSLEKVR----FVNS-GTEAVMTTIRVA------RAYTGRTKIIKFAGCYHGHSDLV 152
Query: 360 ---------TLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFD 410
TLG TPDS + K + A E+ D
Sbjct: 153 LVAAGSGPSTLG-------------------------TPDSAGVPK-SIAQEVITVPFND 186
Query: 411 LEIL---LKKNHNKIAAIIIEPLVQCAG--GMIMYDSIYLKLVREICNNYNIHLIADEIA 465
+E L L K +++AA+++EP+V G G++ +L+ V E+ + +I DE+
Sbjct: 187 IEALKEALDKWGDEVAAVLVEPIV---GNFGIVEPKPGFLEAVNELAHEAGALVIYDEVI 243
Query: 466 VGCGRTGKFF----ACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINI 521
T F A + + PD L K I GG LP+ Y +I
Sbjct: 244 -----TAFRFMYGGAQDLLGVEPDLTALGK-IIGGGLPIGA------------YGGRKDI 285
Query: 522 FLH---------SHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLIT-- 570
+ + +GNP + A +A LE+ ++ + +++ + + + +
Sbjct: 286 MEQVAPLGPAYQAGTMAGNPASMAAGIACLEVLQQEGVYEKLDRLGAMLEEGILEAAEKH 345
Query: 571 -HPKIINFRQKGMIWAF--DVIIEDPEQI-----ETFSKKFFVAALKNELLLRP 616
IN R KG + + D + + +Q E F KFF L + L P
Sbjct: 346 GITITIN-RLKGALTVYFTDEKVTNYDQAERSDGEAFG-KFFKLMLNQGINLAP 397
|
Length = 428 |
| >gnl|CDD|132589 TIGR03550, F420_cofG, 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 4e-08
Identities = 65/258 (25%), Positives = 106/258 (41%), Gaps = 38/258 (14%)
Query: 692 CTEDCGYCPQSTHYNT--EITATKILSIESVITAAQKAKSDGATR--FCMG--------A 739
C CGYC T E+ A +LS E V+ +K + G T F G
Sbjct: 14 CRNRCGYC---TFRRPPGELEAA-LLSPEEVLEILRKGAAAGCTEALFTFGEKPEERYPE 69
Query: 740 AWRELKDRDLDNIENMICEVKKIGLETCLTL-----GMLNENQAYRLKKV----GLDYYN 790
A L + D+ + E+ ++ LE L G+++ ++ RLK V GL
Sbjct: 70 AREWLAEMGYDSTLEYLRELCELALEETGLLPHTNPGVMSRDELARLKPVNASMGLMLET 129
Query: 791 HNLDTSPKLYGDII----STRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIF 846
TS +L +D RL T+++ + I G +IG+ E+R++RAE +
Sbjct: 130 ----TSERLCKGEAHYGSPGKDPAVRLETIEDAGRLKIPFTTGILIGIGETREERAESLL 185
Query: 847 QLANLNP---YPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAG 903
+ L+ + + V + N GTP+ E +RT+AVAR+ +P I +
Sbjct: 186 AIRELHERYGHIQEVIVQNFRAKPGTPMENHPEPSLEEMLRTVAVARLILP-PDISIQVP 244
Query: 904 RKEMGETTQAFCFLAGAN 921
E + AG +
Sbjct: 245 PNLNREDYRLL-LDAGID 261
|
This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 322 |
| >gnl|CDD|223988 COG1060, ThiH, Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 8e-08
Identities = 44/257 (17%), Positives = 83/257 (32%), Gaps = 34/257 (13%)
Query: 692 CTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDN 751
C DC +C LS E ++ ++A G T + E + L+
Sbjct: 69 CVNDCTFCAFYRKPGDP--KAYTLSPEEILEEVREAVKRGITEVLIVGG--EHPELSLEY 124
Query: 752 IENMICEVKKIGLETCLTL-------------GMLNENQAYRLKKVGLDYY-----NHNL 793
E + +K+ + + G+ E RLK+ GLD
Sbjct: 125 YEELFRTIKEEFPDLHIHALSAGEILFLAREGGLSYEEVLKRLKEAGLDSMPGGGAEILS 184
Query: 794 DTSPKLYGDIIS--TRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANL 851
+ I + E L + +GI ++G E+R+ R + + + +L
Sbjct: 185 EE----VRKIHCPPKKSPEEWLEIHERAHRLGIPTTATMLLGHVETREDRIDHLEHIRDL 240
Query: 852 N---PYPESVPINNLVQIKGT-PLYGSSILDPLEFIRTIAVARITMPTS-RIRMSAGRKE 906
+ G P + ++ IA+ARI + + ++ +
Sbjct: 241 QDETGGFQEFIPLRFRPENGPLPAEVVPEASLEQDLKAIALARIFLDNNISNIQASWLR- 299
Query: 907 MGETTQAFCFLAGANSI 923
G L+GAN +
Sbjct: 300 DGVILAQAALLSGANDL 316
|
Length = 370 |
| >gnl|CDD|188425 TIGR03910, pyrrolys_PylB, pyrrolysine biosynthesis radical SAM protein | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 4e-07
Identities = 59/250 (23%), Positives = 110/250 (44%), Gaps = 15/250 (6%)
Query: 659 FNDLLFRAQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKI--LS 716
L + A++V KYF N + L L T C +C +C +Y A + +
Sbjct: 35 MEKLFYVAREVRNKYF-GNRVFLYGFLYFSTF-CKNNCAFC----YYRKSNHAIRRYRKT 88
Query: 717 IESVITAAQKAKSDGA--TRFCMGAAWRELKD-RDLDNIENMICEVKK-IGLETCLTLGM 772
E + AA+ G MG D R + + ++ VK+ GL ++ G+
Sbjct: 89 REEIKAAARALADSGVHLIDLTMGEDPYYHNDPRGFERLAELVRMVKEETGLPVMISPGV 148
Query: 773 LNENQAYRLKKVGLDYYNHNLDTSPK-LYGDIISTRDYENRLNTLKNVRNVGINICCGGI 831
++ +LK+ G ++Y +T + LY + + ++ R+N+ ++ + +G I G +
Sbjct: 149 VDNETLKKLKEAGANWYACYQETHDRELYNKLRVGQSFDERMNSKRHAKRIGYLIEEGIL 208
Query: 832 IGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARI 891
G+ + + A + + +L+ + V + V KGTPL G + L +R IA+ R+
Sbjct: 209 TGVGDDIEDTAISLRGMKSLDA--DQVRVMTFVPQKGTPLEGKDVEGNLAELRIIAIMRL 266
Query: 892 TMPTSRIRMS 901
P I S
Sbjct: 267 LFPDRLIPAS 276
|
This model describes a radical SAM protein, PylB, that is part of the three-gene cassette sufficient for the biosynthesis of pyrrolysine (the twenty-second amino acid) when expressed heterologously in E. coli. The pyrrolysine next is ligated to its own tRNA and incorporated at special UAG codons [Amino acid biosynthesis, Other]. Length = 347 |
| >gnl|CDD|235917 PRK07046, PRK07046, aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 6e-06
Identities = 38/141 (26%), Positives = 61/141 (43%), Gaps = 19/141 (13%)
Query: 411 LEILLKKNHNKIAAIIIEP-LVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEI-AVGC 468
LE L +AA++ EP + GM++ + + + +RE+ Y L+ DE +
Sbjct: 210 LEAALA--DGDVAAVLAEPAMTNI--GMVLPEPGFHEALRELTRRYGTLLVIDETHTISS 265
Query: 469 GRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIY-YKNNINIFLHSHS 527
G G + H + PDFL + K I GG +P ++ + ++ K + HS
Sbjct: 266 GPGG--YTRAHG-LEPDFLVVGKPIAGG-VPCAVYGFSAELAERAQAAKAS---APPGHS 318
Query: 528 -----YSGNPLACCAALATLE 543
S N LA A ATL
Sbjct: 319 GIGTTLSANALAMAAMRATLA 339
|
Length = 453 |
| >gnl|CDD|180835 PRK07094, PRK07094, biotin synthase; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (116), Expect = 1e-05
Identities = 71/294 (24%), Positives = 129/294 (43%), Gaps = 32/294 (10%)
Query: 644 TFNELDEVINLFNLPFNDLLF-RAQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQS 702
T +E+ E+++ + LF A +V +KY +E+ L L+ + C +C YC
Sbjct: 2 TRDEILELLSNDDEEELKYLFKAADEVRKKYVG-DEVHLRGLIEF-SNYCRNNCLYCGLR 59
Query: 703 THYNTEITATKILSIESVITAAQKAKSDGATRFCM--GAAWRELKDRDLDNIENMICEVK 760
N I + LS E ++ A+KA G + G ++ I ++I E+K
Sbjct: 60 RD-NKNIERYR-LSPEEILECAKKAYELGYRTIVLQSGEDPYYTDEK----IADIIKEIK 113
Query: 761 KI-GLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTS-PKLYGDIISTRDYENRLNTLKN 818
K + L+LG + + K+ G D Y +T+ +LY + +ENR+ LK+
Sbjct: 114 KELDVAITLSLGERSYEEYKAWKEAGADRYLLRHETADKELYAKLHPGMSFENRIACLKD 173
Query: 819 VRNVGINICCGGIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSIL 877
++ +G + G ++GL ++ + A+ I L L+ + + I + TPL
Sbjct: 174 LKELGYEVGSGFMVGLPGQTLEDLADDILFLKELD--LDMIGIGPFIPHPDTPLKDEKGG 231
Query: 878 DPLEFIRTIAVARITMPTSRI-RMSA-------GRKEMGETTQAFCFLAGANSI 923
++ +A+ R+ +P + I +A GR E G AGAN +
Sbjct: 232 SLELTLKVLALLRLLLPDANIPATTALGTLNPDGR-EKG-------LKAGANVV 277
|
Length = 323 |
| >gnl|CDD|180485 PRK06245, cofG, FO synthase subunit 1; Reviewed | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 3e-05
Identities = 56/229 (24%), Positives = 94/229 (41%), Gaps = 32/229 (13%)
Query: 692 CTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATR--FCMG--------AAW 741
C CGYC + + +LS E V ++ G T F G
Sbjct: 22 CRNRCGYC----TFRRDPGQPSLLSPEEVKEILRRGADAGCTEALFTFGEVPDESYERIK 77
Query: 742 RELKDRDLDNIENMICEVKKIGLETCL----TLGMLNENQAYRLKKV----GLDYYNHNL 793
+L + +I + ++ ++ LE L G+L + +LK+V GL
Sbjct: 78 EQLAEMGYSSILEYLYDLCELALEEGLLPHTNAGILTREEMEKLKEVNASMGLMLEQ--- 134
Query: 794 DTSPKLYGDIIS---TRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLAN 850
TSP+L + +D E RL T++N + I G +IG+ E+ + RAE + +A
Sbjct: 135 -TSPRLLNTVHRGSPGKDPELRLETIENAGKLKIPFTTGILIGIGETWEDRAESLEAIAE 193
Query: 851 LNP---YPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTS 896
L+ + + V I N G P+ E +R +A+AR+ +P
Sbjct: 194 LHERYGHIQEVIIQNFSPKPGIPMENHPEPSLEEMLRVVALARLILPPD 242
|
Length = 336 |
| >gnl|CDD|237261 PRK12928, PRK12928, lipoyl synthase; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 2e-04
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 8/80 (10%)
Query: 777 QAYRLKKVGL---DYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINIC--CGGI 831
Q RL V D +NHNL+T P+L + DY+ L+ L + + +I G +
Sbjct: 152 QRERLATVLAAKPDVFNHNLETVPRLQKAVRRGADYQRSLDLLARAKELAPDIPTKSGLM 211
Query: 832 IGLSESRDQRAELIFQLANL 851
+GL E+ D E+I L +L
Sbjct: 212 LGLGETED---EVIETLRDL 228
|
Length = 290 |
| >gnl|CDD|224108 COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 4e-04
Identities = 39/158 (24%), Positives = 65/158 (41%), Gaps = 24/158 (15%)
Query: 34 EDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVV 93
E+ ++LNK G V T+FD L E P + G RLDK++ GL+++
Sbjct: 61 EERVYLLLNKPRGYVSSTEDDEGRPTVFDLLPERLPRKKRLFPVG---RLDKDTEGLLLL 117
Query: 94 AKSIKSYIHLVNQLKMHI---VQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTVSKNF 150
+ L ++L MH V+++YL ++ G + + + + +
Sbjct: 118 TNDGE----LAHRL-MHPSSEVEKEYLV------RVEGPVTEEDLEKLRKGVTL---DDG 163
Query: 151 NAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIR 188
KPA L K+ S +R L GR Q+R
Sbjct: 164 ETKPAK--PASL--EKEPGKNNSWLRITLTEGRNRQVR 197
|
Length = 248 |
| >gnl|CDD|223397 COG0320, LipA, Lipoate synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.001
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 781 LKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINIC--CGGIIGLSESR 838
+ G D +NHN++T P+LY + YE L+ L+ + +G +I G ++GL E+
Sbjct: 168 VADAGPDVFNHNVETVPRLYPRVRPGATYERSLSLLERAKELGPDIPTKSGLMVGLGETD 227
Query: 839 DQ 840
++
Sbjct: 228 EE 229
|
Length = 306 |
| >gnl|CDD|233002 TIGR00510, lipA, lipoate synthase | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.003
Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Query: 781 LKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICC--GGIIGLSESR 838
L D YNHNL+T +L + Y L L+ + N+ G ++GL E+
Sbjct: 162 LLDAPPDVYNHNLETVERLTPFVRPGATYRWSLKLLERAKEYLPNLPTKSGIMVGLGETN 221
Query: 839 DQRAELIFQLAN 850
++ + + L +
Sbjct: 222 EEIKQTLKDLRD 233
|
This enzyme is an iron-sulfur protein. It is localized to mitochondria in yeast and Arabidopsis. It generates lipoic acid, a thiol antioxidant that is linked to a specific Lys as prosthetic group for the pyruvate and alpha-ketoglutarate dehydrogenase complexes and the glycine-cleavage system. The family shows strong sequence conservation [Biosynthesis of cofactors, prosthetic groups, and carriers, Lipoate]. Length = 302 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 965 | |||
| COG0161 | 449 | BioA Adenosylmethionine-8-amino-7-oxononanoate ami | 100.0 | |
| COG4992 | 404 | ArgD Ornithine/acetylornithine aminotransferase [A | 100.0 | |
| COG0160 | 447 | GabT 4-aminobutyrate aminotransferase and related | 100.0 | |
| PRK06943 | 453 | adenosylmethionine--8-amino-7-oxononanoate transam | 100.0 | |
| PRK08742 | 472 | adenosylmethionine--8-amino-7-oxononanoate transam | 100.0 | |
| PRK05965 | 459 | hypothetical protein; Provisional | 100.0 | |
| PRK07482 | 461 | hypothetical protein; Provisional | 100.0 | |
| PRK07030 | 466 | adenosylmethionine--8-amino-7-oxononanoate transam | 100.0 | |
| PRK07481 | 449 | hypothetical protein; Provisional | 100.0 | |
| KOG1404|consensus | 442 | 100.0 | ||
| PRK06916 | 460 | adenosylmethionine--8-amino-7-oxononanoate transam | 100.0 | |
| PRK07678 | 451 | aminotransferase; Validated | 100.0 | |
| PLN02760 | 504 | 4-aminobutyrate:pyruvate transaminase | 100.0 | |
| PRK07483 | 443 | hypothetical protein; Provisional | 100.0 | |
| PRK07036 | 466 | hypothetical protein; Provisional | 100.0 | |
| PRK07480 | 456 | putative aminotransferase; Validated | 100.0 | |
| PRK06105 | 460 | aminotransferase; Provisional | 100.0 | |
| PRK06917 | 447 | hypothetical protein; Provisional | 100.0 | |
| PRK07986 | 428 | adenosylmethionine--8-amino-7-oxononanoate transam | 100.0 | |
| PRK06062 | 451 | hypothetical protein; Provisional | 100.0 | |
| PRK06173 | 429 | adenosylmethionine--8-amino-7-oxononanoate transam | 100.0 | |
| PRK09221 | 445 | beta alanine--pyruvate transaminase; Provisional | 100.0 | |
| PRK12403 | 460 | putative aminotransferase; Provisional | 100.0 | |
| PRK13360 | 442 | omega amino acid--pyruvate transaminase; Provision | 100.0 | |
| PRK06541 | 460 | hypothetical protein; Provisional | 100.0 | |
| TIGR03372 | 442 | putres_am_tran putrescine aminotransferase. Member | 100.0 | |
| PRK06938 | 464 | diaminobutyrate--2-oxoglutarate aminotransferase; | 100.0 | |
| PRK05630 | 422 | adenosylmethionine--8-amino-7-oxononanoate transam | 100.0 | |
| PRK11522 | 459 | putrescine--2-oxoglutarate aminotransferase; Provi | 100.0 | |
| KOG1402|consensus | 427 | 100.0 | ||
| PRK06931 | 459 | diaminobutyrate--2-oxoglutarate aminotransferase; | 100.0 | |
| PRK05639 | 457 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| PLN02974 | 817 | adenosylmethionine-8-amino-7-oxononanoate transami | 100.0 | |
| PRK05964 | 423 | adenosylmethionine--8-amino-7-oxononanoate transam | 100.0 | |
| TIGR00709 | 442 | dat 2,4-diaminobutyrate 4-transaminases. This fami | 100.0 | |
| PRK06058 | 443 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| PRK06082 | 459 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| PRK08593 | 445 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| PRK05769 | 441 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| PRK07495 | 425 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| PRK08117 | 433 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| KOG1401|consensus | 433 | 100.0 | ||
| PRK06777 | 421 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| PRK08360 | 443 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| TIGR00700 | 420 | GABAtrnsam 4-aminobutyrate aminotransferase, proka | 100.0 | |
| TIGR00699 | 464 | GABAtrns_euk 4-aminobutyrate aminotransferase, euk | 100.0 | |
| TIGR00508 | 427 | bioA adenosylmethionine-8-amino-7-oxononanoate tra | 100.0 | |
| PRK04612 | 408 | argD acetylornithine transaminase protein; Provisi | 100.0 | |
| COG0001 | 432 | HemL Glutamate-1-semialdehyde aminotransferase [Co | 100.0 | |
| PRK08297 | 443 | L-lysine aminotransferase; Provisional | 100.0 | |
| PRK06918 | 451 | 4-aminobutyrate aminotransferase; Reviewed | 100.0 | |
| PRK09792 | 421 | 4-aminobutyrate transaminase; Provisional | 100.0 | |
| PRK04013 | 364 | argD acetylornithine/acetyl-lysine aminotransferas | 100.0 | |
| PRK06148 | 1013 | hypothetical protein; Provisional | 100.0 | |
| TIGR02407 | 412 | ectoine_ectB diaminobutyrate--2-oxoglutarate amino | 100.0 | |
| PRK09264 | 425 | diaminobutyrate--2-oxoglutarate aminotransferase; | 100.0 | |
| TIGR03246 | 397 | arg_catab_astC succinylornithine transaminase fami | 100.0 | |
| PRK03715 | 395 | argD acetylornithine transaminase protein; Provisi | 100.0 | |
| PLN00144 | 382 | acetylornithine transaminase | 100.0 | |
| PRK12389 | 428 | glutamate-1-semialdehyde aminotransferase; Provisi | 100.0 | |
| TIGR03251 | 431 | LAT_fam L-lysine 6-transaminase. Characterized mem | 100.0 | |
| PF00202 | 339 | Aminotran_3: Aminotransferase class-III; InterPro: | 100.0 | |
| PLN02482 | 474 | glutamate-1-semialdehyde 2,1-aminomutase | 100.0 | |
| PRK12381 | 406 | bifunctional succinylornithine transaminase/acetyl | 100.0 | |
| PLN02624 | 474 | ornithine-delta-aminotransferase | 100.0 | |
| PRK06149 | 972 | hypothetical protein; Provisional | 100.0 | |
| PRK07046 | 453 | aminotransferase; Validated | 100.0 | |
| PRK00615 | 433 | glutamate-1-semialdehyde aminotransferase; Provisi | 100.0 | |
| PRK04073 | 396 | rocD ornithine--oxo-acid transaminase; Provisional | 100.0 | |
| PRK01278 | 389 | argD acetylornithine transaminase protein; Provisi | 100.0 | |
| KOG1403|consensus | 452 | 100.0 | ||
| PRK05093 | 403 | argD bifunctional N-succinyldiaminopimelate-aminot | 100.0 | |
| TIGR01885 | 401 | Orn_aminotrans ornithine aminotransferase. This mo | 100.0 | |
| PRK08088 | 425 | 4-aminobutyrate aminotransferase; Validated | 100.0 | |
| PRK03244 | 398 | argD acetylornithine aminotransferase; Provisional | 100.0 | |
| PRK00062 | 426 | glutamate-1-semialdehyde aminotransferase; Provisi | 100.0 | |
| TIGR00713 | 423 | hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi | 100.0 | |
| PRK02936 | 377 | argD acetylornithine aminotransferase; Provisional | 100.0 | |
| COG0502 | 335 | BioB Biotin synthase and related enzymes [Coenzyme | 100.0 | |
| PRK15108 | 345 | biotin synthase; Provisional | 100.0 | |
| PLN02389 | 379 | biotin synthase | 100.0 | |
| PRK00854 | 401 | rocD ornithine--oxo-acid transaminase; Reviewed | 100.0 | |
| PTZ00125 | 400 | ornithine aminotransferase-like protein; Provision | 100.0 | |
| PRK06209 | 431 | glutamate-1-semialdehyde 2,1-aminomutase; Provisio | 100.0 | |
| PRK04260 | 375 | acetylornithine aminotransferase; Provisional | 100.0 | |
| cd00610 | 413 | OAT_like Acetyl ornithine aminotransferase family. | 100.0 | |
| PRK02627 | 396 | acetylornithine aminotransferase; Provisional | 100.0 | |
| PRK06256 | 336 | biotin synthase; Validated | 100.0 | |
| COG0564 | 289 | RluA Pseudouridylate synthases, 23S RNA-specific [ | 100.0 | |
| PRK08444 | 353 | hypothetical protein; Provisional | 100.0 | |
| PRK08508 | 279 | biotin synthase; Provisional | 100.0 | |
| KOG1405|consensus | 484 | 100.0 | ||
| KOG2900|consensus | 380 | 100.0 | ||
| TIGR00707 | 379 | argD acetylornithine and succinylornithine aminotr | 100.0 | |
| PRK05926 | 370 | hypothetical protein; Provisional | 100.0 | |
| TIGR00433 | 296 | bioB biotin synthetase. Catalyzes the last step of | 100.0 | |
| PRK09240 | 371 | thiH thiamine biosynthesis protein ThiH; Reviewed | 100.0 | |
| PRK07360 | 371 | FO synthase subunit 2; Reviewed | 100.0 | |
| TIGR03700 | 351 | mena_SCO4494 putative menaquinone biosynthesis pro | 100.0 | |
| PRK08445 | 348 | hypothetical protein; Provisional | 100.0 | |
| TIGR03551 | 343 | F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflav | 100.0 | |
| PRK11180 | 325 | rluD 23S rRNA pseudouridine synthase D; Provisiona | 100.0 | |
| PRK09613 | 469 | thiH thiamine biosynthesis protein ThiH; Reviewed | 100.0 | |
| cd02563 | 223 | PseudoU_synth_TruC tRNA pseudouridine isomerase C: | 100.0 | |
| cd02558 | 246 | PSRA_1 PSRA_1: Pseudouridine synthase, a subgroup | 100.0 | |
| PRK05927 | 350 | hypothetical protein; Provisional | 100.0 | |
| TIGR03699 | 340 | mena_SCO4550 menaquinone biosynthesis protein, SCO | 100.0 | |
| PRK11025 | 317 | 23S rRNA pseudouridylate synthase C; Provisional | 100.0 | |
| TIGR00005 | 299 | rluA_subfam pseudouridine synthase, RluA family. m | 100.0 | |
| PRK10158 | 219 | 23S rRNA/tRNA pseudouridine synthase A; Provisiona | 100.0 | |
| PRK11112 | 257 | tRNA pseudouridine synthase C; Provisional | 100.0 | |
| TIGR02351 | 366 | thiH thiazole biosynthesis protein ThiH. Members t | 100.0 | |
| PRK07094 | 323 | biotin synthase; Provisional | 100.0 | |
| TIGR01621 | 217 | RluA-like pseudouridine synthase Rlu family protei | 100.0 | |
| PRK09234 | 843 | fbiC FO synthase; Reviewed | 100.0 | |
| cd02557 | 213 | PseudoU_synth_ScRIB2 PseudoU_synth_ScRIB2_like: Ps | 100.0 | |
| PRK09234 | 843 | fbiC FO synthase; Reviewed | 100.0 | |
| TIGR03550 | 322 | F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflav | 100.0 | |
| COG1060 | 370 | ThiH Thiamine biosynthesis enzyme ThiH and related | 100.0 | |
| TIGR00423 | 309 | radical SAM domain protein, CofH subfamily. This p | 100.0 | |
| PRK06267 | 350 | hypothetical protein; Provisional | 100.0 | |
| cd02869 | 185 | PseudoU_synth_RluCD_like PseudoU_synth_RsuA/RluD: | 100.0 | |
| PRK07505 | 402 | hypothetical protein; Provisional | 100.0 | |
| PRK06245 | 336 | cofG FO synthase subunit 1; Reviewed | 100.0 | |
| PLN02822 | 481 | serine palmitoyltransferase | 99.97 | |
| PRK13393 | 406 | 5-aminolevulinate synthase; Provisional | 99.97 | |
| cd02550 | 154 | PseudoU_synth_Rsu_Rlu_like PseudoU_synth_Rsu_Rlu: | 99.97 | |
| TIGR01821 | 402 | 5aminolev_synth 5-aminolevulinic acid synthase. Th | 99.96 | |
| PRK09064 | 407 | 5-aminolevulinate synthase; Validated | 99.96 | |
| KOG1919|consensus | 371 | 99.96 | ||
| cd02556 | 167 | PseudoU_synth_RluB PseudoU_synth_RluB: Pseudouridi | 99.96 | |
| cd02870 | 146 | PseudoU_synth_RsuA_like Pseudouridine synthases ar | 99.95 | |
| COG0156 | 388 | BioF 7-keto-8-aminopelargonate synthetase and rela | 99.95 | |
| PLN03227 | 392 | serine palmitoyltransferase-like protein; Provisio | 99.95 | |
| PF00849 | 164 | PseudoU_synth_2: RNA pseudouridylate synthase This | 99.95 | |
| PRK05958 | 385 | 8-amino-7-oxononanoate synthase; Reviewed | 99.95 | |
| PRK10839 | 232 | 16S rRNA pseudouridylate synthase A; Provisional | 99.95 | |
| PLN02955 | 476 | 8-amino-7-oxononanoate synthase | 99.95 | |
| cd02553 | 167 | PseudoU_synth_RsuA PseudoU_synth_RsuA: Pseudouridi | 99.95 | |
| PRK07179 | 407 | hypothetical protein; Provisional | 99.95 | |
| cd02566 | 168 | PseudoU_synth_RluE PseudoU_synth_RluE: Pseudouridi | 99.94 | |
| TIGR01825 | 385 | gly_Cac_T_rel pyridoxal phosphate-dependent acyltr | 99.94 | |
| COG1856 | 275 | Uncharacterized homolog of biotin synthetase [Func | 99.94 | |
| cd02555 | 177 | PSSA_1 PSSA_1: Pseudouridine synthase, a subgroup | 99.93 | |
| PRK13392 | 410 | 5-aminolevulinate synthase; Provisional | 99.93 | |
| PRK11394 | 217 | 23S rRNA pseudouridine synthase E; Provisional | 99.93 | |
| TIGR01822 | 393 | 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig | 99.93 | |
| COG1187 | 248 | RsuA 16S rRNA uridine-516 pseudouridylate synthase | 99.93 | |
| PRK06939 | 397 | 2-amino-3-ketobutyrate coenzyme A ligase; Provisio | 99.93 | |
| PRK10700 | 289 | 23S rRNA pseudouridylate synthase B; Provisional | 99.93 | |
| TIGR00858 | 360 | bioF 8-amino-7-oxononanoate synthase. This model r | 99.92 | |
| COG0436 | 393 | Aspartate/tyrosine/aromatic aminotransferase [Amin | 99.92 | |
| PRK12928 | 290 | lipoyl synthase; Provisional | 99.91 | |
| PRK05937 | 370 | 8-amino-7-oxononanoate synthase; Provisional | 99.91 | |
| cd02554 | 164 | PseudoU_synth_RluF PseudoU_synth_RluF_like: Pseudo | 99.9 | |
| PRK03317 | 368 | histidinol-phosphate aminotransferase; Provisional | 99.9 | |
| PRK10475 | 290 | 23S rRNA pseudouridine synthase F; Provisional | 99.9 | |
| PRK05481 | 289 | lipoyl synthase; Provisional | 99.9 | |
| PTZ00413 | 398 | lipoate synthase; Provisional | 99.9 | |
| PLN02483 | 489 | serine palmitoyltransferase | 99.89 | |
| TIGR00093 | 128 | pseudouridine synthase. This model identifies pane | 99.89 | |
| KOG1359|consensus | 417 | 99.89 | ||
| TIGR00510 | 302 | lipA lipoate synthase. The family shows strong seq | 99.89 | |
| cd06454 | 349 | KBL_like KBL_like; this family belongs to the pyri | 99.88 | |
| PLN02428 | 349 | lipoic acid synthase | 99.88 | |
| PRK01533 | 366 | histidinol-phosphate aminotransferase; Validated | 99.87 | |
| COG0079 | 356 | HisC Histidinol-phosphate/aromatic aminotransferas | 99.87 | |
| KOG1360|consensus | 570 | 99.87 | ||
| PRK06225 | 380 | aspartate aminotransferase; Provisional | 99.87 | |
| cd00613 | 398 | GDC-P Glycine cleavage system P-protein, alpha- an | 99.87 | |
| PRK07682 | 378 | hypothetical protein; Validated | 99.87 | |
| PRK03158 | 359 | histidinol-phosphate aminotransferase; Provisional | 99.86 | |
| PRK08153 | 369 | histidinol-phosphate aminotransferase; Provisional | 99.86 | |
| PLN00175 | 413 | aminotransferase family protein; Provisional | 99.86 | |
| PRK06108 | 382 | aspartate aminotransferase; Provisional | 99.86 | |
| PRK07324 | 373 | transaminase; Validated | 99.85 | |
| TIGR03471 | 472 | HpnJ hopanoid biosynthesis associated radical SAM | 99.85 | |
| TIGR01579 | 414 | MiaB-like-C MiaB-like tRNA modifying enzyme. This | 99.85 | |
| COG1104 | 386 | NifS Cysteine sulfinate desulfinase/cysteine desul | 99.85 | |
| TIGR03576 | 346 | pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 | 99.85 | |
| PRK13355 | 517 | bifunctional HTH-domain containing protein/aminotr | 99.85 | |
| PRK02731 | 367 | histidinol-phosphate aminotransferase; Validated | 99.85 | |
| PRK06207 | 405 | aspartate aminotransferase; Provisional | 99.85 | |
| TIGR01141 | 346 | hisC histidinol-phosphate aminotransferase. Histid | 99.85 | |
| TIGR02026 | 497 | BchE magnesium-protoporphyrin IX monomethyl ester | 99.84 | |
| PRK07681 | 399 | aspartate aminotransferase; Provisional | 99.84 | |
| PRK02610 | 374 | histidinol-phosphate aminotransferase; Provisional | 99.83 | |
| PRK00950 | 361 | histidinol-phosphate aminotransferase; Validated | 99.83 | |
| PRK09147 | 396 | succinyldiaminopimelate transaminase; Provisional | 99.83 | |
| PLN00145 | 430 | tyrosine/nicotianamine aminotransferase; Provision | 99.83 | |
| PRK08960 | 387 | hypothetical protein; Provisional | 99.83 | |
| PRK14809 | 357 | histidinol-phosphate aminotransferase; Provisional | 99.83 | |
| PRK09148 | 405 | aminotransferase; Validated | 99.83 | |
| PRK12414 | 384 | putative aminotransferase; Provisional | 99.83 | |
| PRK08068 | 389 | transaminase; Reviewed | 99.83 | |
| PRK14331 | 437 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.83 | |
| TIGR00089 | 429 | RNA modification enzyme, MiaB family. This subfami | 99.83 | |
| PRK06358 | 354 | threonine-phosphate decarboxylase; Provisional | 99.83 | |
| PRK14327 | 509 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.83 | |
| PRK14332 | 449 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.83 | |
| TIGR01125 | 430 | MiaB-like tRNA modifying enzyme YliG, TIGR01125. T | 99.83 | |
| PRK06348 | 384 | aspartate aminotransferase; Provisional | 99.83 | |
| PRK06290 | 410 | aspartate aminotransferase; Provisional | 99.83 | |
| PTZ00433 | 412 | tyrosine aminotransferase; Provisional | 99.83 | |
| TIGR03537 | 350 | DapC succinyldiaminopimelate transaminase. Note: t | 99.83 | |
| PRK14325 | 444 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.82 | |
| TIGR01212 | 302 | radical SAM protein, TIGR01212 family. This unchar | 99.82 | |
| PRK07309 | 391 | aromatic amino acid aminotransferase; Validated | 99.82 | |
| PRK14329 | 467 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.82 | |
| PRK07366 | 388 | succinyldiaminopimelate transaminase; Validated | 99.82 | |
| PRK14339 | 420 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.82 | |
| PRK14340 | 445 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.82 | |
| PRK08056 | 356 | threonine-phosphate decarboxylase; Provisional | 99.82 | |
| PRK14335 | 455 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.82 | |
| PRK14326 | 502 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.82 | |
| PLN02187 | 462 | rooty/superroot1 | 99.82 | |
| PLN02656 | 409 | tyrosine transaminase | 99.82 | |
| PLN00143 | 409 | tyrosine/nicotianamine aminotransferase; Provision | 99.82 | |
| PRK08363 | 398 | alanine aminotransferase; Validated | 99.82 | |
| PRK09105 | 370 | putative aminotransferase; Provisional | 99.82 | |
| PRK05904 | 353 | coproporphyrinogen III oxidase; Provisional | 99.82 | |
| PRK05764 | 393 | aspartate aminotransferase; Provisional | 99.81 | |
| PRK08912 | 387 | hypothetical protein; Provisional | 99.81 | |
| PLN03026 | 380 | histidinol-phosphate aminotransferase; Provisional | 99.81 | |
| KOG0257|consensus | 420 | 99.81 | ||
| PRK15481 | 431 | transcriptional regulatory protein PtsJ; Provision | 99.81 | |
| PRK14328 | 439 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.81 | |
| TIGR01574 | 438 | miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-3 | 99.81 | |
| TIGR03540 | 383 | DapC_direct LL-diaminopimelate aminotransferase. T | 99.81 | |
| PRK06107 | 402 | aspartate aminotransferase; Provisional | 99.81 | |
| PRK09276 | 385 | LL-diaminopimelate aminotransferase; Provisional | 99.81 | |
| cd00609 | 350 | AAT_like Aspartate aminotransferase family. This f | 99.81 | |
| TIGR01578 | 420 | MiaB-like-B MiaB-like tRNA modifying enzyme, archa | 99.81 | |
| PRK08636 | 403 | aspartate aminotransferase; Provisional | 99.81 | |
| PRK14336 | 418 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.81 | |
| PRK05942 | 394 | aspartate aminotransferase; Provisional | 99.81 | |
| PRK14807 | 351 | histidinol-phosphate aminotransferase; Provisional | 99.81 | |
| cd06502 | 338 | TA_like Low-specificity threonine aldolase (TA). T | 99.81 | |
| PLN02721 | 353 | threonine aldolase | 99.81 | |
| PRK07550 | 386 | hypothetical protein; Provisional | 99.81 | |
| PRK09082 | 386 | methionine aminotransferase; Validated | 99.81 | |
| PRK07777 | 387 | aminotransferase; Validated | 99.81 | |
| PTZ00377 | 481 | alanine aminotransferase; Provisional | 99.81 | |
| PRK05839 | 374 | hypothetical protein; Provisional | 99.8 | |
| PRK14862 | 440 | rimO ribosomal protein S12 methylthiotransferase; | 99.8 | |
| PRK08361 | 391 | aspartate aminotransferase; Provisional | 99.8 | |
| PRK14330 | 434 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.8 | |
| PRK14338 | 459 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.8 | |
| PRK08207 | 488 | coproporphyrinogen III oxidase; Provisional | 99.8 | |
| PRK07683 | 387 | aminotransferase A; Validated | 99.8 | |
| KOG0259|consensus | 447 | 99.8 | ||
| PRK07392 | 360 | threonine-phosphate decarboxylase; Validated | 99.8 | |
| PRK05664 | 330 | threonine-phosphate decarboxylase; Reviewed | 99.8 | |
| TIGR03538 | 393 | DapC_gpp succinyldiaminopimelate transaminase. Thi | 99.8 | |
| PRK14337 | 446 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.8 | |
| PRK14333 | 448 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.8 | |
| PRK14808 | 335 | histidinol-phosphate aminotransferase; Provisional | 99.8 | |
| PRK08175 | 395 | aminotransferase; Validated | 99.8 | |
| PRK03321 | 352 | putative aminotransferase; Provisional | 99.8 | |
| TIGR01264 | 401 | tyr_amTase_E tyrosine aminotransferase, eukaryotic | 99.8 | |
| PRK14334 | 440 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.8 | |
| TIGR03402 | 379 | FeS_nifS cysteine desulfurase NifS. Members of thi | 99.8 | |
| COG1168 | 388 | MalY Bifunctional PLP-dependent enzyme with beta-c | 99.79 | |
| PRK05387 | 353 | histidinol-phosphate aminotransferase; Provisional | 99.79 | |
| PRK07568 | 397 | aspartate aminotransferase; Provisional | 99.79 | |
| PRK13520 | 371 | L-tyrosine decarboxylase; Provisional | 99.79 | |
| PRK07337 | 388 | aminotransferase; Validated | 99.79 | |
| PF00155 | 363 | Aminotran_1_2: Aminotransferase class I and II 1-a | 99.79 | |
| TIGR03539 | 357 | DapC_actino succinyldiaminopimelate transaminase. | 99.79 | |
| PRK09265 | 404 | aminotransferase AlaT; Validated | 99.79 | |
| smart00729 | 216 | Elp3 Elongator protein 3, MiaB family, Radical SAM | 99.79 | |
| PRK06425 | 332 | histidinol-phosphate aminotransferase; Validated | 99.79 | |
| PRK01688 | 351 | histidinol-phosphate aminotransferase; Provisional | 99.79 | |
| TIGR01140 | 330 | L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy | 99.78 | |
| PRK05957 | 389 | aspartate aminotransferase; Provisional | 99.78 | |
| PRK06855 | 433 | aminotransferase; Validated | 99.78 | |
| PRK04870 | 356 | histidinol-phosphate aminotransferase; Provisional | 99.78 | |
| PRK05166 | 371 | histidinol-phosphate aminotransferase; Provisional | 99.78 | |
| PRK06959 | 339 | putative threonine-phosphate decarboxylase; Provis | 99.78 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 99.78 | |
| PRK07379 | 400 | coproporphyrinogen III oxidase; Provisional | 99.78 | |
| PRK10874 | 401 | cysteine sulfinate desulfinase; Provisional | 99.78 | |
| PTZ00376 | 404 | aspartate aminotransferase; Provisional | 99.78 | |
| TIGR03392 | 398 | FeS_syn_CsdA cysteine desulfurase, catalytic subun | 99.78 | |
| PLN02231 | 534 | alanine transaminase | 99.78 | |
| PRK07865 | 364 | N-succinyldiaminopimelate aminotransferase; Review | 99.78 | |
| PRK08599 | 377 | coproporphyrinogen III oxidase; Provisional | 99.78 | |
| PRK08354 | 311 | putative aminotransferase; Provisional | 99.78 | |
| PRK09295 | 406 | bifunctional cysteine desulfurase/selenocysteine l | 99.78 | |
| PRK05799 | 374 | coproporphyrinogen III oxidase; Provisional | 99.77 | |
| TIGR03301 | 355 | PhnW-AepZ 2-aminoethylphosphonate aminotransferase | 99.77 | |
| PRK09257 | 396 | aromatic amino acid aminotransferase; Provisional | 99.77 | |
| PRK05660 | 378 | HemN family oxidoreductase; Provisional | 99.77 | |
| PRK09058 | 449 | coproporphyrinogen III oxidase; Provisional | 99.77 | |
| TIGR00539 | 360 | hemN_rel putative oxygen-independent coproporphyri | 99.77 | |
| TIGR01265 | 403 | tyr_nico_aTase tyrosine/nicotianamine aminotransfe | 99.76 | |
| TIGR01976 | 397 | am_tr_V_VC1184 cysteine desulfurase family protein | 99.76 | |
| PRK09057 | 380 | coproporphyrinogen III oxidase; Provisional | 99.76 | |
| PLN02368 | 407 | alanine transaminase | 99.76 | |
| cd06453 | 373 | SufS_like Cysteine desulfurase (SufS)-like. This f | 99.76 | |
| TIGR02539 | 370 | SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation | 99.75 | |
| TIGR01210 | 313 | conserved hypothetical protein TIGR01210. This fam | 99.75 | |
| PRK08446 | 350 | coproporphyrinogen III oxidase; Provisional | 99.75 | |
| PLN02450 | 468 | 1-aminocyclopropane-1-carboxylate synthase | 99.75 | |
| PRK10534 | 333 | L-threonine aldolase; Provisional | 99.75 | |
| PRK05628 | 375 | coproporphyrinogen III oxidase; Validated | 99.75 | |
| PRK07590 | 409 | L,L-diaminopimelate aminotransferase; Validated | 99.75 | |
| PRK09331 | 387 | Sep-tRNA:Cys-tRNA synthetase; Provisional | 99.75 | |
| PRK03967 | 337 | histidinol-phosphate aminotransferase; Provisional | 99.75 | |
| PRK08898 | 394 | coproporphyrinogen III oxidase; Provisional | 99.75 | |
| PRK06294 | 370 | coproporphyrinogen III oxidase; Provisional | 99.75 | |
| PRK06836 | 394 | aspartate aminotransferase; Provisional | 99.74 | |
| PRK04781 | 364 | histidinol-phosphate aminotransferase; Provisional | 99.74 | |
| PRK06582 | 390 | coproporphyrinogen III oxidase; Provisional | 99.74 | |
| PLN02607 | 447 | 1-aminocyclopropane-1-carboxylate synthase | 99.74 | |
| PRK08208 | 430 | coproporphyrinogen III oxidase; Validated | 99.74 | |
| PLN02376 | 496 | 1-aminocyclopropane-1-carboxylate synthase | 99.74 | |
| PRK13238 | 460 | tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d | 99.73 | |
| PRK04635 | 354 | histidinol-phosphate aminotransferase; Provisional | 99.73 | |
| COG0621 | 437 | MiaB 2-methylthioadenine synthetase [Translation, | 99.73 | |
| COG1242 | 312 | Predicted Fe-S oxidoreductase [General function pr | 99.73 | |
| TIGR01211 | 522 | ELP3 histone acetyltransferase, ELP3 family. The S | 99.72 | |
| TIGR03542 | 402 | DAPAT_plant LL-diaminopimelate aminotransferase. T | 99.72 | |
| TIGR01979 | 403 | sufS cysteine desulfurases, SufS subfamily. This m | 99.72 | |
| cd06451 | 356 | AGAT_like Alanine-glyoxylate aminotransferase (AGA | 99.72 | |
| COG0520 | 405 | csdA Selenocysteine lyase/Cysteine desulfurase [Po | 99.72 | |
| TIGR03812 | 373 | tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe | 99.72 | |
| PRK09440 | 416 | avtA valine--pyruvate transaminase; Provisional | 99.71 | |
| TIGR00538 | 455 | hemN oxygen-independent coproporphyrinogen III oxi | 99.71 | |
| PLN02855 | 424 | Bifunctional selenocysteine lyase/cysteine desulfu | 99.71 | |
| COG0320 | 306 | LipA Lipoate synthase [Coenzyme metabolism] | 99.71 | |
| PLN02397 | 423 | aspartate transaminase | 99.7 | |
| TIGR03403 | 382 | nifS_epsilon cysteine desulfurase, NifS family, ep | 99.7 | |
| TIGR02326 | 363 | transamin_PhnW 2-aminoethylphosphonate--pyruvate t | 99.7 | |
| PRK02948 | 381 | cysteine desulfurase; Provisional | 99.7 | |
| TIGR01814 | 406 | kynureninase kynureninase. This model describes ky | 99.7 | |
| TIGR02006 | 402 | IscS cysteine desulfurase IscS. This model represe | 99.7 | |
| PRK09275 | 527 | aspartate aminotransferase; Provisional | 99.7 | |
| PRK13347 | 453 | coproporphyrinogen III oxidase; Provisional | 99.69 | |
| PRK07908 | 349 | hypothetical protein; Provisional | 99.69 | |
| TIGR01977 | 376 | am_tr_V_EF2568 cysteine desulfurase family protein | 99.69 | |
| COG2008 | 342 | GLY1 Threonine aldolase [Amino acid transport and | 99.69 | |
| cd06452 | 361 | SepCysS Sep-tRNA:Cys-tRNA synthase. This family be | 99.69 | |
| KOG1368|consensus | 384 | 99.68 | ||
| PRK09249 | 453 | coproporphyrinogen III oxidase; Provisional | 99.68 | |
| PLN02951 | 373 | Molybderin biosynthesis protein CNX2 | 99.68 | |
| TIGR01437 | 363 | selA_rel uncharacterized pyridoxal phosphate-depen | 99.68 | |
| PRK13034 | 416 | serine hydroxymethyltransferase; Reviewed | 99.68 | |
| PF00266 | 371 | Aminotran_5: Aminotransferase class-V; InterPro: I | 99.67 | |
| cd01335 | 204 | Radical_SAM Radical SAM superfamily. Enzymes of th | 99.67 | |
| TIGR03801 | 521 | asp_4_decarbox aspartate 4-decarboxylase. This enz | 99.66 | |
| COG1167 | 459 | ARO8 Transcriptional regulators containing a DNA-b | 99.66 | |
| PRK08637 | 388 | hypothetical protein; Provisional | 99.66 | |
| PRK13361 | 329 | molybdenum cofactor biosynthesis protein A; Provis | 99.66 | |
| TIGR02666 | 334 | moaA molybdenum cofactor biosynthesis protein A, b | 99.66 | |
| PLN02409 | 401 | serine--glyoxylate aminotransaminase | 99.64 | |
| cd00616 | 352 | AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa | 99.64 | |
| COG2896 | 322 | MoaA Molybdenum cofactor biosynthesis enzyme [Coen | 99.64 | |
| PRK13479 | 368 | 2-aminoethylphosphonate--pyruvate transaminase; Pr | 99.64 | |
| cd00378 | 402 | SHMT Serine-glycine hydroxymethyltransferase (SHMT | 99.63 | |
| PRK08629 | 433 | coproporphyrinogen III oxidase; Provisional | 99.62 | |
| TIGR01325 | 380 | O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. | 99.62 | |
| PRK00164 | 331 | moaA molybdenum cofactor biosynthesis protein A; R | 99.62 | |
| PRK00011 | 416 | glyA serine hydroxymethyltransferase; Reviewed | 99.62 | |
| PLN02651 | 364 | cysteine desulfurase | 99.62 | |
| COG1243 | 515 | ELP3 Histone acetyltransferase [Transcription / Ch | 99.61 | |
| COG0635 | 416 | HemN Coproporphyrinogen III oxidase and related Fe | 99.61 | |
| PF04055 | 166 | Radical_SAM: Radical SAM superfamily; InterPro: IP | 99.61 | |
| KOG0633|consensus | 375 | 99.6 | ||
| cd00614 | 369 | CGS_like CGS_like: Cystathionine gamma-synthase is | 99.6 | |
| cd06450 | 345 | DOPA_deC_like DOPA decarboxylase family. This fami | 99.6 | |
| TIGR02668 | 302 | moaA_archaeal probable molybdenum cofactor biosynt | 99.6 | |
| PRK14012 | 404 | cysteine desulfurase; Provisional | 99.59 | |
| cd00617 | 431 | Tnase_like Tryptophanase family (Tnase). This fami | 99.58 | |
| PRK00955 | 620 | hypothetical protein; Provisional | 99.58 | |
| PRK01254 | 707 | hypothetical protein; Provisional | 99.58 | |
| COG1032 | 490 | Fe-S oxidoreductase [Energy production and convers | 99.58 | |
| PLN02242 | 418 | methionine gamma-lyase | 99.57 | |
| PF06968 | 93 | BATS: Biotin and Thiamin Synthesis associated doma | 99.56 | |
| KOG1358|consensus | 467 | 99.56 | ||
| PRK07049 | 427 | methionine gamma-lyase; Validated | 99.56 | |
| PRK06767 | 386 | methionine gamma-lyase; Provisional | 99.55 | |
| smart00876 | 94 | BATS Biotin and Thiamin Synthesis associated domai | 99.55 | |
| PRK08133 | 390 | O-succinylhomoserine sulfhydrylase; Validated | 99.54 | |
| PRK13580 | 493 | serine hydroxymethyltransferase; Provisional | 99.54 | |
| PRK08247 | 366 | cystathionine gamma-synthase; Reviewed | 99.54 | |
| TIGR01290 | 442 | nifB nitrogenase cofactor biosynthesis protein Nif | 99.54 | |
| TIGR02493 | 235 | PFLA pyruvate formate-lyase 1-activating enzyme. A | 99.53 | |
| PRK08249 | 398 | cystathionine gamma-synthase; Provisional | 99.53 | |
| COG3977 | 417 | Alanine-alpha-ketoisovalerate (or valine-pyruvate) | 99.52 | |
| TIGR03235 | 353 | DNA_S_dndA cysteine desulfurase DndA. This model d | 99.52 | |
| PRK05301 | 378 | pyrroloquinoline quinone biosynthesis protein PqqE | 99.52 | |
| PRK06234 | 400 | methionine gamma-lyase; Provisional | 99.51 | |
| KOG0256|consensus | 471 | 99.51 | ||
| KOG1549|consensus | 428 | 99.5 | ||
| PRK00451 | 447 | glycine dehydrogenase subunit 1; Validated | 99.5 | |
| PRK11658 | 379 | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin | 99.49 | |
| TIGR03470 | 318 | HpnH hopanoid biosynthesis associated radical SAM | 99.48 | |
| PRK08045 | 386 | cystathionine gamma-synthase; Provisional | 99.48 | |
| PTZ00094 | 452 | serine hydroxymethyltransferase; Provisional | 99.48 | |
| PRK04366 | 481 | glycine dehydrogenase subunit 2; Validated | 99.47 | |
| TIGR02379 | 376 | ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | 99.47 | |
| PRK08861 | 388 | cystathionine gamma-synthase; Provisional | 99.47 | |
| PRK06460 | 376 | hypothetical protein; Provisional | 99.47 | |
| PRK07810 | 403 | O-succinylhomoserine sulfhydrylase; Provisional | 99.47 | |
| TIGR03822 | 321 | AblA_like_2 lysine-2,3-aminomutase-related protein | 99.47 | |
| PRK07504 | 398 | O-succinylhomoserine sulfhydrylase; Reviewed | 99.46 | |
| COG2100 | 414 | Predicted Fe-S oxidoreductase [General function pr | 99.46 | |
| TIGR01328 | 391 | met_gam_lyase methionine gamma-lyase. This model d | 99.46 | |
| KOG1357|consensus | 519 | 99.46 | ||
| TIGR02080 | 382 | O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. | 99.46 | |
| PRK07582 | 366 | cystathionine gamma-lyase; Validated | 99.46 | |
| TIGR01788 | 431 | Glu-decarb-GAD glutamate decarboxylase. This model | 99.45 | |
| TIGR02109 | 358 | PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. | 99.45 | |
| PRK08776 | 405 | cystathionine gamma-synthase; Provisional | 99.44 | |
| PRK07269 | 364 | cystathionine gamma-synthase; Reviewed | 99.44 | |
| COG2516 | 339 | Biotin synthase-related enzyme [General function p | 99.44 | |
| PRK07503 | 403 | methionine gamma-lyase; Provisional | 99.44 | |
| PRK06084 | 425 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.43 | |
| TIGR01326 | 418 | OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d | 99.43 | |
| PRK05968 | 389 | hypothetical protein; Provisional | 99.43 | |
| PRK07811 | 388 | cystathionine gamma-synthase; Provisional | 99.43 | |
| PRK11145 | 246 | pflA pyruvate formate lyase-activating enzyme 1; P | 99.43 | |
| TIGR01324 | 377 | cysta_beta_ly_B cystathionine beta-lyase, bacteria | 99.43 | |
| PRK08574 | 385 | cystathionine gamma-synthase; Provisional | 99.42 | |
| PLN03226 | 475 | serine hydroxymethyltransferase; Provisional | 99.42 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 99.41 | |
| PRK07050 | 394 | cystathionine beta-lyase; Provisional | 99.41 | |
| PRK05994 | 427 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.41 | |
| KOG2672|consensus | 360 | 99.41 | ||
| PRK13762 | 322 | tRNA-modifying enzyme; Provisional | 99.39 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 99.39 | |
| PRK02769 | 380 | histidine decarboxylase; Provisional | 99.38 | |
| PLN03032 | 374 | serine decarboxylase; Provisional | 99.38 | |
| PRK11706 | 375 | TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio | 99.38 | |
| PRK09028 | 394 | cystathionine beta-lyase; Provisional | 99.38 | |
| TIGR01329 | 378 | cysta_beta_ly_E cystathionine beta-lyase, eukaryot | 99.37 | |
| PRK08064 | 390 | cystathionine beta-lyase; Provisional | 99.37 | |
| COG1031 | 560 | Uncharacterized Fe-S oxidoreductase [Energy produc | 99.36 | |
| TIGR03588 | 380 | PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin | 99.36 | |
| PRK05967 | 395 | cystathionine beta-lyase; Provisional | 99.36 | |
| PLN02509 | 464 | cystathionine beta-lyase | 99.34 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 99.33 | |
| PRK15407 | 438 | lipopolysaccharide biosynthesis protein RfbH; Prov | 99.31 | |
| TIGR02495 | 191 | NrdG2 anaerobic ribonucleoside-triphosphate reduct | 99.31 | |
| PRK08248 | 431 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.3 | |
| PRK03080 | 378 | phosphoserine aminotransferase; Provisional | 99.3 | |
| PRK06702 | 432 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.3 | |
| PRK04311 | 464 | selenocysteine synthase; Provisional | 99.3 | |
| PRK06176 | 380 | cystathionine gamma-synthase/cystathionine beta-ly | 99.29 | |
| COG0075 | 383 | Serine-pyruvate aminotransferase/archaeal aspartat | 99.29 | |
| PRK14460 | 354 | ribosomal RNA large subunit methyltransferase N; P | 99.28 | |
| PRK14456 | 368 | ribosomal RNA large subunit methyltransferase N; P | 99.28 | |
| PRK07671 | 377 | cystathionine beta-lyase; Provisional | 99.28 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 99.27 | |
| cd01494 | 170 | AAT_I Aspartate aminotransferase (AAT) superfamily | 99.27 | |
| PRK07812 | 436 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.27 | |
| TIGR00474 | 454 | selA seryl-tRNA(sec) selenium transferase. In bact | 99.26 | |
| cd00615 | 294 | Orn_deC_like Ornithine decarboxylase family. This | 99.25 | |
| PRK08114 | 395 | cystathionine beta-lyase; Provisional | 99.25 | |
| PF01041 | 363 | DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe | 99.24 | |
| PRK05939 | 397 | hypothetical protein; Provisional | 99.24 | |
| PRK14455 | 356 | ribosomal RNA large subunit methyltransferase N; P | 99.23 | |
| PRK08134 | 433 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.23 | |
| PLN02724 | 805 | Molybdenum cofactor sulfurase | 99.22 | |
| TIGR00238 | 331 | KamA family protein. Note that the E. coli homolog | 99.21 | |
| PF01053 | 386 | Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent | 99.2 | |
| COG4277 | 404 | Predicted DNA-binding protein with the Helix-hairp | 99.2 | |
| PRK14463 | 349 | ribosomal RNA large subunit methyltransferase N; P | 99.2 | |
| PRK14459 | 373 | ribosomal RNA large subunit methyltransferase N; P | 99.19 | |
| PRK14468 | 343 | ribosomal RNA large subunit methyltransferase N; P | 99.18 | |
| PRK05613 | 437 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.18 | |
| KOG0634|consensus | 472 | 99.16 | ||
| KOG4355|consensus | 547 | 99.16 | ||
| PRK14469 | 343 | ribosomal RNA large subunit methyltransferase N; P | 99.15 | |
| TIGR01364 | 349 | serC_1 phosphoserine aminotransferase. This model | 99.15 | |
| COG1180 | 260 | PflA Pyruvate-formate lyase-activating enzyme [Pos | 99.15 | |
| TIGR03531 | 444 | selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr | 99.15 | |
| TIGR03799 | 522 | NOD_PanD_pyr putative pyridoxal-dependent aspartat | 99.15 | |
| PF01212 | 290 | Beta_elim_lyase: Beta-eliminating lyase; InterPro: | 99.14 | |
| TIGR03820 | 417 | lys_2_3_AblA lysine-2,3-aminomutase. This model de | 99.14 | |
| PLN02880 | 490 | tyrosine decarboxylase | 99.13 | |
| PRK14470 | 336 | ribosomal RNA large subunit methyltransferase N; P | 99.13 | |
| TIGR03821 | 321 | AblA_like_1 lysine-2,3-aminomutase-related protein | 99.13 | |
| TIGR02618 | 450 | tyr_phenol_ly tyrosine phenol-lyase. This model de | 99.12 | |
| PLN02263 | 470 | serine decarboxylase | 99.12 | |
| COG0399 | 374 | WecE Predicted pyridoxal phosphate-dependent enzym | 99.12 | |
| TIGR00048 | 355 | radical SAM enzyme, Cfr family. A Staphylococcus s | 99.11 | |
| PRK05355 | 360 | 3-phosphoserine/phosphohydroxythreonine aminotrans | 99.1 | |
| PRK13745 | 412 | anaerobic sulfatase-maturase; Provisional | 99.1 | |
| PRK14462 | 356 | ribosomal RNA large subunit methyltransferase N; P | 99.09 | |
| TIGR01366 | 361 | serC_3 phosphoserine aminotransferase, putative. T | 99.08 | |
| PRK14467 | 348 | ribosomal RNA large subunit methyltransferase N; P | 99.07 | |
| PRK14466 | 345 | ribosomal RNA large subunit methyltransferase N; P | 99.06 | |
| TIGR03278 | 404 | methan_mark_10 putative methanogenesis marker prot | 99.06 | |
| PRK13758 | 370 | anaerobic sulfatase-maturase; Provisional | 99.06 | |
| PLN02590 | 539 | probable tyrosine decarboxylase | 99.06 | |
| PRK06434 | 384 | cystathionine gamma-lyase; Validated | 99.05 | |
| cd00611 | 355 | PSAT_like Phosphoserine aminotransferase (PSAT) fa | 99.04 | |
| COG2108 | 353 | Uncharacterized conserved protein related to pyruv | 99.04 |
| >COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-81 Score=671.63 Aligned_cols=422 Identities=42% Similarity=0.723 Sum_probs=383.6
Q ss_pred ccccccccccCcccccccccCCCce-----eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCC
Q psy8199 221 AYKLGLIHPKNNLKLKWRINLPDDI-----SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLT 295 (965)
Q Consensus 221 a~~l~f~~p~~~~~~~~~~~~p~~~-----~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~ 295 (965)
...-++|||+++..... ..|.++ +||||.|||+|||.+|||||+++||++|+|.+|+++|++++.|++..+++
T Consensus 8 ~d~~~~whP~t~~~~~~--~~~~~i~~aeG~yl~d~~G~r~lDg~sg~W~~~~Gh~~~~i~~Ai~~Q~~~l~~~~~~~~t 85 (449)
T COG0161 8 ADLSHLWHPFTQMRDPL--AEPRVIVRAEGVYLTDIDGRRYLDGMSGLWCVNHGHGRPEIAEAIKKQLDKLPHVMFGGFT 85 (449)
T ss_pred hhhhheecccccccccc--ccceeeeecceeEEEeCCCCEEEecccHHHHhhcCcCCHHHHHHHHHHHHhCCchhhcccC
Confidence 35568899999988763 126655 99999999999999999999999999999999999999999999888899
Q ss_pred cHHHHHHHHHHHhhcC-CCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCc-Ccc
Q psy8199 296 HKPVIKLSEKLSSLTQ-YKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQ-SFK 373 (965)
Q Consensus 296 ~~~~~~la~~l~~~~~-~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~-~~~ 373 (965)
+++.++||++|+++.| .++++|||++|||||||.|+|+|++||+.+|+++|.++|+...+|||.|.+++|+++.. .++
T Consensus 86 ~~Pa~~LA~~L~~~aP~~~l~~vFf~~sGSeAvEtAlKma~qY~~~~G~p~r~~~Isr~~gYHG~T~ga~Sv~g~~~~~~ 165 (449)
T COG0161 86 HEPAIELAEKLAELAPEGGLDHVFFTDSGSEAVETALKMALQYWRARGQPQRKKFISRRNGYHGDTLGAMSVGGPVALRH 165 (449)
T ss_pred CchHHHHHHHHHHhCCCCCccEEEEeCCchHHHHHHHHHHHHHHHhcCCCcceEEEEeccCcCcccchheeccCchhhhh
Confidence 9999999999999999 45999999999999999999999999999999999999999999999999999999944 455
Q ss_pred chhcccCCCeeEecCCCCCCCC-CCCChhHHHHHHHHHHHHHHHhCC-CcEEEEEEccccccCCCcccCChHHHHHHHHH
Q psy8199 374 EIYTSLLNKTYIITTPDSRNIN-KGNSANEIARCAIFDLEILLKKNH-NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREI 451 (965)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~~le~~l~~~~-~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l 451 (965)
..+.++.+++.++|.|..+... .+....++ ..++++||++|.+++ +++||||+||++++.+|+++||++||++++++
T Consensus 166 ~~~~~ll~~~~~~~~P~~y~~~~~~~~~~~~-~~~a~~le~~i~~~g~~~IAAfI~EPv~g~agG~~~pp~~Yl~~vr~i 244 (449)
T COG0161 166 AFYDPLLPEVLHLPAPYAYRRGFFGEGDEEF-AEAADELEALILEHGPETIAAFIVEPVVGGAGGMLVPPPGYLKRVREI 244 (449)
T ss_pred hhccccccCceecCCCcccccCCCCCChHHH-HHHHHHHHHHHHhcCcccEEEEEecccccccCCcccCChHHHHHHHHH
Confidence 7888888999999999876544 34555566 789999999999886 89999999996666699999999999999999
Q ss_pred HHhcCCeEEEeccccCCCcccccccccccCCCcceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCC
Q psy8199 452 CNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGN 531 (965)
Q Consensus 452 ~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~ 531 (965)
|++||||||+|||.|||||||++|+++++|+.||++|+||+|+|||+|+|++++++++++.+..+. ...|.||+||+||
T Consensus 245 C~ky~ILlI~DEV~tGFGRTG~~FA~e~~gi~PDi~~~aKGLT~GY~Pl~a~l~~~~I~~~~~~~~-~~~f~HG~TYsgh 323 (449)
T COG0161 245 CDKYGILLIADEVATGFGRTGKMFACEHAGIVPDILCLAKGLTGGYLPLSAVLTSDRIYEAFSDGD-AGAFMHGHTYSGN 323 (449)
T ss_pred HHHcCcEEEeecceeCCCcCchhhhhhhcCCCCCeeeecccccccchhhHhHhhhHHHHHHHhccc-CCeeccCCccccC
Confidence 999999999999999999999999999999999999999999999999999999999999998743 6789999999999
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHc-ccCCCceeeeeceeEEEEEEEeecCccchh----hHHHHHHHH
Q psy8199 532 PLACCAALATLEIFNKDNILQRISQDMKKITKALTS-LITHPKIINFRQKGMIWAFDVIIEDPEQIE----TFSKKFFVA 606 (965)
Q Consensus 532 ~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~-l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~----~~~~~~~~~ 606 (965)
|++||+|+++|++++++++.+++++.+.+|.++|++ +..+|.|.+||+.|+|.++++. .+..+.. ....++...
T Consensus 324 PlacAaAla~L~i~e~e~l~~~~~~~~~~l~~~L~~~l~~~p~VgdVR~~Gli~~iElv-~d~~t~~~f~~~~~~~~~~~ 402 (449)
T COG0161 324 PLACAAALANLDILEEEDLLERVAEIGAYLQAGLQAALADHPLVGDVRGLGLIGAIELV-ADKATKTPFEARVGARVRAA 402 (449)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcccCCcEEEeeccceEEEEEEe-cccccccchhhhHHHHHHHH
Confidence 999999999999999999999999999999999998 6778999999999999999998 5544442 334567888
Q ss_pred HHHcCcEEeecCCEEEEeCCcccCHHHHHHHHHhhhccccc
Q psy8199 607 ALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNE 647 (965)
Q Consensus 607 l~~~Gi~~~~~~~~lR~~p~~~~t~~~i~~~~~~l~~~~~~ 647 (965)
+.++|++++|.|+.+-++||+++|+++++++++++.+++..
T Consensus 403 ~~e~Gl~iRp~g~~i~~~PPliit~~eid~l~~~l~~al~~ 443 (449)
T COG0161 403 ALERGLLIRPLGDVIYLMPPLIITREEIDELVDALREALDE 443 (449)
T ss_pred HHHCCeEEeecCCEEEEcCCccCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998876654
|
|
| >COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-77 Score=631.35 Aligned_cols=363 Identities=32% Similarity=0.520 Sum_probs=337.5
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhH
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGAS 325 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGse 325 (965)
+||||.+||+||||.+|+++++|||+||.+++|+++|++++.|.+ ..+.+++..+|+++|++.+| ..++|+|+|||+|
T Consensus 34 ~~v~D~~G~~YlDf~~Giav~~lGH~hP~iv~al~~Q~~kl~h~s-n~~~~~~~~~la~~L~~~s~-~~d~vff~NSGaE 111 (404)
T COG4992 34 AYVWDQQGREYLDFAAGIAVNNLGHCHPALVEALKEQAEKLWHVS-NLFYNEPQAELAEKLVELSP-FADRVFFCNSGAE 111 (404)
T ss_pred cEEECCCCCEeeeeccceeeeccCCCCHHHHHHHHHHHHHhhhcc-cccCChHHHHHHHHHHhhCc-cccEEEEcCCcHH
Confidence 999999999999999999999999999999999999999998775 46889999999999999997 7999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHH
Q psy8199 326 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIAR 405 (965)
Q Consensus 326 A~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (965)
|||+|+|+||.|+. .++|.+||+|.++|||+|.+++++++++.|+..|.|+.+++.++|+
T Consensus 112 A~EaAiKlARk~~~---~~~k~~Iia~~nsFHGRT~galS~t~~~ky~~~F~Pl~~g~~~vpf----------------- 171 (404)
T COG4992 112 ANEAALKLARKYTG---DPEKSKIIAFENSFHGRTLGALSATGQPKYRKGFGPLLPGFRHVPF----------------- 171 (404)
T ss_pred HHHHHHHHHHHHcC---CCCCcEEEEEcCCcCCccceeeeccCChhhccCCCCCCCCceecCC-----------------
Confidence 99999999999953 2458899999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcc
Q psy8199 406 CAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPD 485 (965)
Q Consensus 406 ~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pD 485 (965)
||+++++++|+ ++++|||+|| ||+++|+++++++||+++|+||++||+|||+||||||+||||++|+++++|+.||
T Consensus 172 nDi~al~~ai~---~~taAvivEP-IQGEgGV~~~~~~fl~~lr~lCd~~g~LLI~DEVQtG~GRTGk~fA~e~~gV~PD 247 (404)
T COG4992 172 NDIEALEAAID---EDTAAVIVEP-IQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTGLGRTGKLFAYEHYGVEPD 247 (404)
T ss_pred CCHHHHHHHhc---cCeEEEEEec-ccCCCCCCCCCHHHHHHHHHHHHHhCeEEEEeccccCCCccchHHHHHHhCCCCC
Confidence 69999999996 4899999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Q psy8199 486 FLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKAL 565 (965)
Q Consensus 486 ivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L 565 (965)
|+|++|+|||| +|+||+++++++++.+.. ..|++||+|||++||++.++|+++.++++.+++++++++|+++|
T Consensus 248 I~tlaK~LgGG-~PigA~la~~~~~~~~~~------G~HgSTfGGNpLacAv~~a~l~~l~~e~ll~~v~~~g~~~~~~L 320 (404)
T COG4992 248 ILTLAKALGGG-FPIGAMLATEEIASAFTP------GDHGSTFGGNPLACAVALAVLEVLLEEGLLENVREKGEYLLQRL 320 (404)
T ss_pred EEEeeccccCC-ccceeeEEchhhhhcCCC------CcccCCCCcCHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHH
Confidence 99999999999 799999999777777654 47999999999999999999999999999999999999999999
Q ss_pred Hcc-cCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecC-CEEEEeCCcccCHHHHHHHHHhhhc
Q psy8199 566 TSL-ITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG-NTVYLMPPYILNKNEIQHMTSAIFQ 643 (965)
Q Consensus 566 ~~l-~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~-~~lR~~p~~~~t~~~i~~~~~~l~~ 643 (965)
+++ .++|.+..|||+|+|+++++. .+ ..+..+.+.|.++|+++.+.+ +++||.||+++++++++++++++++
T Consensus 321 ~~l~~~~~~v~~vRG~GLmiGiel~-~~-----~~a~~~~~~~~~~gvL~~~a~~~ViR~~PpL~i~~eei~~~~~~l~~ 394 (404)
T COG4992 321 RELKRRYPLVKEVRGRGLMIGIELK-EP-----YRARDIVRALREEGVLVLPAGPNVIRFLPPLVITEEEIDEALDALER 394 (404)
T ss_pred HHHhhcCCceeeeecceeEEEEEec-Cc-----ccHHHHHHHHHHCCeEEecCCCCeEEecCCccCCHHHHHHHHHHHHH
Confidence 998 667878899999999999997 21 125578899999999998755 7999999999999999999999987
Q ss_pred cccc
Q psy8199 644 TFNE 647 (965)
Q Consensus 644 ~~~~ 647 (965)
++..
T Consensus 395 ~l~~ 398 (404)
T COG4992 395 ALAA 398 (404)
T ss_pred HHHH
Confidence 6654
|
|
| >COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-74 Score=627.73 Aligned_cols=385 Identities=33% Similarity=0.537 Sum_probs=348.5
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCC-CCCeEEEcCChh
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQY-KLGHCFYGSDGA 324 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~-~~~~v~~~~sGs 324 (965)
+||||+|||+||||.+|+++.++||+||.|++|+++|++++.|.+......++..+++++|.+.+|. +.++++|++|||
T Consensus 48 ~~l~DvdG~~ylDf~sgi~v~~~GH~hP~Vv~Av~~q~~~~~h~~~~~~~~e~~v~~ae~L~~~~p~~~~~~~~f~~sGa 127 (447)
T COG0160 48 AYLYDVDGNEYLDFLSGIAVLNLGHNHPRVVEAVKRQLAKLNHTHTRDLYYEPYVELAEKLTALAPGSGLKKVFFGNSGA 127 (447)
T ss_pred CEEEeCCCCEEEEcccCcchhccCCCCHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHhCCcccCCeEEecCCcH
Confidence 9999999999999999999999999999999999999999987765555569999999999999997 688999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcC-ccchhcccCCCeeEecCCCCCCCCCCCChhHH
Q psy8199 325 SAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQS-FKEIYTSLLNKTYIITTPDSRNINKGNSANEI 403 (965)
Q Consensus 325 eA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (965)
||||+|+|+||.| +++..||+|.++|||+|.+++++|+... ++..+.++.+++.++|+|++++++.+...+++
T Consensus 128 eA~E~AiKiAr~~------Tgr~~viaf~~afHG~T~galslT~~~~~~~~~~~~~~~~v~~~Pyp~~yr~p~~~~~~~~ 201 (447)
T COG0160 128 EAVEAAIKIARAY------TGRPGVIAFDGAFHGRTLGALSLTGSKPPYKAGFGPLPPGVYHVPYPNPYRCPFGIGGEEC 201 (447)
T ss_pred HHHHHHHHHHHHH------hCCCcEEEECCcccccchhhHHhccCccccccCCCCCCCCeEEecCCccccCcccCchhhh
Confidence 9999999999999 6999999999999999999999999654 44667888888999999999998866555666
Q ss_pred HHHHHHHHHHHHHhC---CCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccccccccccc
Q psy8199 404 ARCAIFDLEILLKKN---HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHA 480 (965)
Q Consensus 404 ~~~d~~~le~~l~~~---~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~ 480 (965)
.....+.+++.+... +.++||||+|| ||+++|.++||++||++++++|++||+++|+|||||||||||++|++|++
T Consensus 202 ~~~~~~~~e~~i~~~~~~~~~vAaiI~Ep-IQgegG~~v~p~~fl~~l~~~~~~~gillI~DEVQtG~GRTG~~fa~E~~ 280 (447)
T COG0160 202 GDDALEYIERALFDLEVGPEEVAAIIIEP-IQGEGGIIVPPKGFLKALRKLCREHGILLIADEVQTGFGRTGKMFAFEHF 280 (447)
T ss_pred hHHHHHHHHHHHHhhcCCCCceeEEEEec-ccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCccccchhhhhc
Confidence 666777788766443 56899999999 99999999999999999999999999999999999999999999999999
Q ss_pred CCCcceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Q psy8199 481 EIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKK 560 (965)
Q Consensus 481 ~~~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~ 560 (965)
|+.||++|+||+++|| +|+|++++++++++ +.. ..|++||+|||++||+|+|+|++++++++.+++.+.+++
T Consensus 281 gv~PDivt~aK~ig~G-~Pl~avv~r~ei~~-~~~------g~~~~Tf~GNpva~Aaa~AvL~vie~e~L~~~a~~~G~~ 352 (447)
T COG0160 281 GVEPDIVTLAKSLGGG-LPLSAVVGRAEIMD-WPP------GGHGGTFGGNPVACAAALAVLDVIEEENLLERAAELGEY 352 (447)
T ss_pred CCCCCEEEecccccCC-CceeEEeccHHhcc-cCC------cccCCCCCcCHHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 9999999999999998 79999999999998 333 258899999999999999999999999999999999999
Q ss_pred HHHHHHcc-cCCCceeeeeceeEEEEEEEeecCcc---chhhHHHHHHHHHHHcCcEEeecC---CEEEEeCCcccCHHH
Q psy8199 561 ITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDPE---QIETFSKKFFVAALKNELLLRPIG---NTVYLMPPYILNKNE 633 (965)
Q Consensus 561 l~~~L~~l-~~~~~i~~v~g~G~~~~i~~~~~~~~---~~~~~~~~~~~~l~~~Gi~~~~~~---~~lR~~p~~~~t~~~ 633 (965)
|+++|.++ .++|.|.+|||.|+|+++++. .+.. +....+.++.+.|+++|+++...| +++||.||+++++++
T Consensus 353 l~~~L~~l~~~~~~IgdVRG~Glm~giE~v-~d~~t~~p~~~~~~~i~~~~~~~Glil~~~G~~~nviRi~PPL~is~e~ 431 (447)
T COG0160 353 LRDRLEELQEKHPLIGDVRGLGLMIGVELV-KDRDTKEPDAELAAKIVARAFERGLLLLTCGPHGNVLRILPPLTISDEE 431 (447)
T ss_pred HHHHHHHHHhhcCceecccccceEEEEEEe-cCCCCCCCCHHHHHHHHHHHHHcCCEEeccCCCCcEEEEeCCcccCHHH
Confidence 99999999 789999999999999999998 4432 334567789999999999887654 899999999999999
Q ss_pred HHHHHHhhhcccc
Q psy8199 634 IQHMTSAIFQTFN 646 (965)
Q Consensus 634 i~~~~~~l~~~~~ 646 (965)
+++.++.+.+++.
T Consensus 432 ~d~~l~il~~al~ 444 (447)
T COG0160 432 LDEGLDILEEALK 444 (447)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887654
|
|
| >PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-70 Score=623.08 Aligned_cols=423 Identities=53% Similarity=0.934 Sum_probs=370.8
Q ss_pred ccccccccCcccccccccCCCce-----eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcH
Q psy8199 223 KLGLIHPKNNLKLKWRINLPDDI-----SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHK 297 (965)
Q Consensus 223 ~l~f~~p~~~~~~~~~~~~p~~~-----~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~ 297 (965)
+...|||++....... ..|+.+ +||||.|||+|||+.+|+|+.+|||+||+|++|+++|++++.+....++.++
T Consensus 19 ~~~~~~~~~~~~~~~~-~~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~~~ 97 (453)
T PRK06943 19 LRAVWHPCTQMKHHER-LPLLPVARGEGAWLYDRDGRRYLDAISSWWVNLFGHANPRINAALKDQLDTLEHAMLAGCTHE 97 (453)
T ss_pred hcccccCCcCcccccc-CCCceEEecccCEEEeCCCCEEEEcchHHHHhcCCCCCHHHHHHHHHHHHhcCCccccccCCH
Confidence 3446777655432210 125544 9999999999999999999999999999999999999999877665678899
Q ss_pred HHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhc
Q psy8199 298 PVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYT 377 (965)
Q Consensus 298 ~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~ 377 (965)
...+|+++|++.+|..+++|+|++|||||++.|+|+|+.|+..+|.++|.+||+++++|||+|.+++++++...++..|.
T Consensus 98 ~~~~lAe~L~~~~p~~~~~v~f~~sGseAve~AlKlA~~~~~~rg~~~r~~Ii~~~~~yHG~t~gals~~~~~~~~~~~~ 177 (453)
T PRK06943 98 PAIELAERLAALTGGTLGHAFFASDGASAVEIALKMSFHAWRNRGRGDKREFVCLANGYHGETIGALGVTDVALFKDAYD 177 (453)
T ss_pred HHHHHHHHHHHhCCCCCCEEEEeCCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCcCCCcHHhhcccCChhhhcccc
Confidence 99999999999988667899999999999999999999998888888999999999999999999999999888888888
Q ss_pred ccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCC
Q psy8199 378 SLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNI 457 (965)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~ 457 (965)
++.+++.++|.|+..+.+.+...+++..+|+++++++++++++++||||+||++++++|+++||++||++|+++|++||+
T Consensus 178 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~iAAviiEPvvqg~gG~~~~~~~yl~~lr~lc~~~gi 257 (453)
T PRK06943 178 PLIRHAHVVASPDARGARPGETAADVAARALADVRRLFAERAGKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYGV 257 (453)
T ss_pred cCCCCCEEECCCCccccccCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEeccccccCCcccCCHHHHHHHHHHHHHcCC
Confidence 88888888888876665555555677778999999999877789999999993399999999999999999999999999
Q ss_pred eEEEeccccCCCcccccccccccCCCcceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHH
Q psy8199 458 HLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCA 537 (965)
Q Consensus 458 llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aa 537 (965)
++|+|||+|||||+|++|+++++|+.||++|+||+|+|||+|+|++++++++++.+..+.....+.|++||+|||++|++
T Consensus 258 llI~DEV~TG~GRtG~~fa~~~~gv~PDivt~gKgl~gG~~Pi~av~~~~ei~~~~~~~~~~~~~~~~~T~~gnpl~~aa 337 (453)
T PRK06943 258 HLIADEIAVGCGRTGTFFACEQAGVWPDFLCLSKGISGGYLPLSLVLSRDAIFAAFYDDDVTRGFLHSHSYTGNPLACRA 337 (453)
T ss_pred EEEeechhhCCCCCcchhHHHhCCCCCCeEeeehhhccCcccceEEEEcHHHHHhhcccCccCCccCCCCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999988999999999999988642112346799999999999999
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHHcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec
Q psy8199 538 ALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI 617 (965)
Q Consensus 538 a~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~ 617 (965)
|+++|++++++++.+++++++++|+++|+++.+++.+.+++|.|+|+++++. .+..+.......+...++++||++.+.
T Consensus 338 a~a~L~~i~~~~l~~~~~~~G~~l~~~L~~l~~~~~v~~vrG~Gl~~gvel~-~~~~~~~~~~~~i~~~~~~~Gll~~~~ 416 (453)
T PRK06943 338 ALATLDLFAEDDVLARNARKSARLRAALAPLAAHPQVRHLRQRGTIFAFDVA-LDGDAARTFSRRFFEAALERELLLRPI 416 (453)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCEEeEeccccEEEEEEc-cCCCcchHHHHHHHHHHHHCCcEEEec
Confidence 9999999999999999999999999999999778889999999999999996 232222334567888999999999988
Q ss_pred CCEEEEeCCcccCHHHHHHHHHhhhccccc
Q psy8199 618 GNTVYLMPPYILNKNEIQHMTSAIFQTFNE 647 (965)
Q Consensus 618 ~~~lR~~p~~~~t~~~i~~~~~~l~~~~~~ 647 (965)
++.+||+||+++|+++++++++++.+++.+
T Consensus 417 g~~l~~~Ppl~it~~eid~~~~~l~~al~~ 446 (453)
T PRK06943 417 GTTVYLMPPYVLDDDEIAWLAERTRATLDA 446 (453)
T ss_pred CCEEEEeCCCcCCHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999877654
|
|
| >PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-69 Score=615.35 Aligned_cols=422 Identities=42% Similarity=0.767 Sum_probs=366.2
Q ss_pred cccccccCcccccccccCC-Cce-----eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcH
Q psy8199 224 LGLIHPKNNLKLKWRINLP-DDI-----SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHK 297 (965)
Q Consensus 224 l~f~~p~~~~~~~~~~~~p-~~~-----~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~ 297 (965)
..+|+|++....... ..| +.+ +||||.|||+|||+.+|+|++++||+||+|++|+++|++++.+.+...+.++
T Consensus 29 ~~~~~~~~~~~~~~~-~~~~~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~l~~~~~~~~~~~ 107 (472)
T PRK08742 29 AVLWHPCTQMREHPH-TLPLVPIARGEGAWLVGHDGRRYLDAVSSWWTNLFGHAEPRIGAAIAAQAGELEQVMLAGFTHE 107 (472)
T ss_pred cccccCCcccccccc-cCCCeeEEecccCEEEeCCCCEEEEcCccHHhccCCCCCHHHHHHHHHHHHhCCCccccccCCH
Confidence 346777765432210 112 333 9999999999999999999999999999999999999998766655568899
Q ss_pred HHHHHHHHHHhhcCC-----CCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCc
Q psy8199 298 PVIKLSEKLSSLTQY-----KLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSF 372 (965)
Q Consensus 298 ~~~~la~~l~~~~~~-----~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~ 372 (965)
+..+|+++|++.+|. ++++|+|++|||||||.|+|+||.|+..+|+++|.+||+++++|||+|.+++++++.+.+
T Consensus 108 ~~~~lae~L~~~~p~~~~~~~~~~v~f~~sGSEAvE~AlKlAr~~~~~~g~~~r~~ii~~~~syHG~t~gals~~~~~~~ 187 (472)
T PRK08742 108 PAVQLAEQLLAIAPRQDGRAPLSKVFYADNGSAGVEVALKMAFHYFHNRGEHRRTRFIALENGYHGETIGALAVGDIPLY 187 (472)
T ss_pred HHHHHHHHHHHhCCCcccCCCCCEEEEeCCchHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCchhhhhccCCccc
Confidence 999999999999874 367999999999999999999999988888889999999999999999999999998878
Q ss_pred cchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHH
Q psy8199 373 KEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREIC 452 (965)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~ 452 (965)
+..+.++.+++.++|.|+.++...+.....+...+++.++++++..+++++|||+||++++++|+++||++||++|+++|
T Consensus 188 ~~~~~p~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~iAAvI~EPviqg~gG~~~~p~~fl~~lr~lc 267 (472)
T PRK08742 188 RRVYAPLLLESLFAPSPDAYLAEPGQSAEDYALQAADALQALFEQSPGEICALILEPRLQCAGGMRMHHPAYLRRARELC 267 (472)
T ss_pred ccccCCCCCCCEEeCCCCccccccCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEccccccCCCcccCCHHHHHHHHHHH
Confidence 88888888888899988776655555555566678899999997667789999999955999999999999999999999
Q ss_pred HhcCCeEEEeccccCCCcccccccccccCCCcceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCH
Q psy8199 453 NNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNP 532 (965)
Q Consensus 453 ~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~ 532 (965)
++||++||+|||+|||||+|++|+++++|+.||++|+||+|+|||+|+|++++++++++.+........+.|++||+|||
T Consensus 268 ~~~gillI~DEV~TGfGRtG~~~a~e~~gv~PDiv~~gKgl~gG~~Plaav~~~~ei~~~~~~~~~~~~~~h~~T~~gnp 347 (472)
T PRK08742 268 DAHGAFLIADEIATGFGRTGTLFACEQAGVMPDLLCLSKGLTGGFLPLSAVLATQQLYDAFLDDSRERAFLHSHSYTGNP 347 (472)
T ss_pred HHcCCEEEEechhhCCCCCccchHHHhcCCCCCEEEEcccccCCCCCcceeeccHHHHHHhhccCccCccCcCCCCCccH
Confidence 99999999999999999999999999999999999999999999889999999999999875421123467999999999
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcccCCCceeeeeceeEEEEEEEeecCccch------hhHHHHHHHH
Q psy8199 533 LACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQI------ETFSKKFFVA 606 (965)
Q Consensus 533 ~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~------~~~~~~~~~~ 606 (965)
++|++++++|++++++++.+++++++++|++.++.+.++|.+.+|||.|+|+++++. .+..+. ......+.+.
T Consensus 348 l~~Aaa~a~L~~i~~~~l~~~~~~~g~~l~~~~~~~~~~~~i~dvRG~Gl~~giel~-~~~~~~~~~~~~~~~~~~~~~~ 426 (472)
T PRK08742 348 LACAAALATLDIFADDDVIARNQPTAARMTQLAAQIGEHPHVADVRQAGMVVAFELT-RGGNKRTPFPPAARVGLHAYRA 426 (472)
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhcCCCeeeEeccceEEEEEec-cCccccccCCchhHHHHHHHHH
Confidence 999999999999999999999999999999888887778889999999999999997 332211 1234567888
Q ss_pred HHHcCcEEeecCCEEEEeCCcccCHHHHHHHHHhhhccccc
Q psy8199 607 ALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNE 647 (965)
Q Consensus 607 l~~~Gi~~~~~~~~lR~~p~~~~t~~~i~~~~~~l~~~~~~ 647 (965)
++++||++.+.+++|||.||+++++++++++++++.+++.+
T Consensus 427 ~~~~Gll~~~~g~vi~~~PpL~it~~ei~~~~~~l~~~l~~ 467 (472)
T PRK08742 427 ALARGVVLRPLGDVLYWMPPYCVDEAQLALLADTTRHAIDE 467 (472)
T ss_pred HHHCCeEEEecCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999998899999999999999999999999877643
|
|
| >PRK05965 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-69 Score=617.15 Aligned_cols=400 Identities=26% Similarity=0.475 Sum_probs=351.8
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhcccccc-CCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChh
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVML-SNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGA 324 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~-~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGs 324 (965)
+||||.|||+|||+.+|+|+.++||+||+|++|+++|++++.+.+. ..+.+++..+|+++|++.+|.+.++|+|++|||
T Consensus 38 ~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGS 117 (459)
T PRK05965 38 ATLTDASGHQLLDAFAGLWCVNVGYGQESIVEAAAEQMRELPYATGYFHFGSEPAIRLAAKLAERAPGSLNHVYFTLGGS 117 (459)
T ss_pred eEEEECCCCEEEECcccHHhccCCCCCHHHHHHHHHHHHhcCCcccccccCCHHHHHHHHHHHhhCCCCcCEEEEeCChh
Confidence 9999999999999999999999999999999999999998766543 256789999999999999987789999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHH
Q psy8199 325 SAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIA 404 (965)
Q Consensus 325 eA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (965)
||||.|+|+||.|++.+|.++|.+||+++++|||+|.+++++++.+.++..+.++.++..++|.|..++.+.+.+...+.
T Consensus 118 EAve~AlKlAr~~~~~~g~~~r~kii~~~~~YHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (459)
T PRK05965 118 DAVDSAVRFIRHYWNATGRPSKKQFISLERGYHGSSSVGAGLTALPAFHRGFDLPLPWQHKIPSPYPYRNPVGDDPQAII 197 (459)
T ss_pred HHHHHHHHHHHHHHHhcCCCCccEEEEecCCcCcccHHHHHhcCCchhhcccCCCCCCCEEcCCCcccccccCCChHHHH
Confidence 99999999999998888888999999999999999999999998777777777766677777777655444333444556
Q ss_pred HHHHHHHHHHHHhCC-CcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCC
Q psy8199 405 RCAIFDLEILLKKNH-NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIW 483 (965)
Q Consensus 405 ~~d~~~le~~l~~~~-~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~ 483 (965)
..++++++++++++. +++||||+|| +++++|+++||++||++|+++|++||++||+|||+|||||+|++|+++++|+.
T Consensus 198 ~~~~~~l~~~i~~~~~~~iAAvIvEP-iqg~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfGRtG~~~a~~~~gv~ 276 (459)
T PRK05965 198 AASVAALRAKVAELGADNVAAFFCEP-IQGSGGVIVPPKGWLKAMREACRELGILFVADEVITGFGRTGPLFACEAEGVV 276 (459)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEEec-cccCCCCccCCHHHHHHHHHHHHHcCCEEEEechhccCccCchhhhHhhcCCC
Confidence 678889999997653 7899999999 99999999999999999999999999999999999999999999999999999
Q ss_pred cceeeeccccCCCcccceeeeecHHHHHhhhccCC-cccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Q psy8199 484 PDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNN-INIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKIT 562 (965)
Q Consensus 484 pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~-~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~ 562 (965)
||++|+||+|+|||+|+|++++++++++.+..+.. ...+.|++||+|||++||+|+++|++++++++.+++++++++|.
T Consensus 277 PDiv~~gKgl~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~l~~~~l~~~~~~~g~~l~ 356 (459)
T PRK05965 277 PDLMTVAKGLTSGYVPMGAVLMSDHVYQGIADGAGAAAPVGHGYTYSAHPVSAAVGLEVLRLYHEGGLLANGQKAGPRFA 356 (459)
T ss_pred CCeEEechhhccCCcceeEEEEcHHHHHHHhccccccccccccCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 99999999999998899999999999998864211 12367999999999999999999999999999999999999999
Q ss_pred HHHHcccCCCceeeeeceeEEEEEEEeecCccc------hhhHHHHHHHHHHHcCcEEeecC-CEEEEeCCcccCHHHHH
Q psy8199 563 KALTSLITHPKIINFRQKGMIWAFDVIIEDPEQ------IETFSKKFFVAALKNELLLRPIG-NTVYLMPPYILNKNEIQ 635 (965)
Q Consensus 563 ~~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~------~~~~~~~~~~~l~~~Gi~~~~~~-~~lR~~p~~~~t~~~i~ 635 (965)
++|+++.++|.+.+|||.|+|+++++. .+..+ .......+.+.|+++||++.+.+ +++||.||+++++++++
T Consensus 357 ~~l~~l~~~~~v~~vrG~Gl~~gie~~-~~~~~~~~~~~~~~~~~~i~~~~~~~Gll~~~~g~~~i~~~PpL~it~~ei~ 435 (459)
T PRK05965 357 AGLDALRAHPLVGDVRGRGLLGALELV-ADKATKTPFDAALDPADRIFDRAYANGLVFRAFGDGVLGFAPALCCTEGEFD 435 (459)
T ss_pred HHHHhhccCCCEEEEeecceEEEEEEe-ccccccCCCCchhHHHHHHHHHHHhCCeEEEecCCcEEEEECCCcCCHHHHH
Confidence 999998778889999999999999996 22111 11245678889999999999866 68999999999999999
Q ss_pred HHHHhhhccccc
Q psy8199 636 HMTSAIFQTFNE 647 (965)
Q Consensus 636 ~~~~~l~~~~~~ 647 (965)
++++++.+++..
T Consensus 436 ~~~~~l~~~l~~ 447 (459)
T PRK05965 436 LIFERTRKTLDD 447 (459)
T ss_pred HHHHHHHHHHHH
Confidence 999999877653
|
|
| >PRK07482 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-69 Score=614.42 Aligned_cols=422 Identities=24% Similarity=0.406 Sum_probs=362.4
Q ss_pred ccccccCccccccc-ccCCCce-----eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhcccccc-CCCCcH
Q psy8199 225 GLIHPKNNLKLKWR-INLPDDI-----SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVML-SNLTHK 297 (965)
Q Consensus 225 ~f~~p~~~~~~~~~-~~~p~~~-----~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~-~~~~~~ 297 (965)
.+|||++....... ...|+++ +||||.|||+||||.+|+|++++||+||+|++|+++|++++.+++. ..+.++
T Consensus 15 ~~~~~~~~~~~~~~~~~~p~~i~~a~G~~l~D~dG~~ylD~~sg~~~~~lGh~~p~v~~Av~~q~~~~~~~~~~~~~~~~ 94 (461)
T PRK07482 15 HFFHPSTHLGDHARGELPGRIVEGGEGIRITDAQGRRYIDAFAGLYCVNVGYGRTEVAEAIAEQAKELAYYHTYVGHGTE 94 (461)
T ss_pred hccCCcccccccccccCCCeeEEeeeeeEEEECCCCEEEEcccchhhhcCCCCCHHHHHHHHHHHHhcCccccccccCCH
Confidence 46677654432210 0125555 9999999999999999999999999999999999999999865443 367899
Q ss_pred HHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhc
Q psy8199 298 PVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYT 377 (965)
Q Consensus 298 ~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~ 377 (965)
+..+|+++|++.+|.+.++|+|++|||||+|+|+|+||.|+..+|.++|.+||+++++|||+|.+++++++.+.++..+.
T Consensus 95 ~~~~lAe~L~~~~p~~~~~v~f~~sGSEAve~AlKlAr~~~~~~g~~~r~~Ii~~~~~YHG~t~ga~s~~~~~~~~~~~~ 174 (461)
T PRK07482 95 ASITLSKRIIDRAPAGMSKVYYGLSGSDANETQIKLVWYYNNVLGRPEKKKIISRWRGYHGSGVVTGSLTGLSLFHQHFD 174 (461)
T ss_pred HHHHHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCceEEEecCccCCccHhhhhccCCchhhhccC
Confidence 99999999999998678999999999999999999999998888888999999999999999999999999888888888
Q ss_pred ccCCCeeEecCCCCCCCC-CCCChhHHHHHHHHHHHHHHHhC-CCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhc
Q psy8199 378 SLLNKTYIITTPDSRNIN-KGNSANEIARCAIFDLEILLKKN-HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNY 455 (965)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~~le~~l~~~-~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~ 455 (965)
++.+++.++|.|..+..+ .+...+.+...|+++|++++.+. ++++||||+|| +++++|+++|+++|+++|+++|++|
T Consensus 175 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~iAAvi~EP-vqg~gG~~~~~~~yl~~lr~lc~~~ 253 (461)
T PRK07482 175 LPIARVLHTEAPHYYRRADAGMSEEQFSAYCADELEELILAEGPDTIAAFIAEP-VLGTGGIVPPPAGYWPAIQAVLKKY 253 (461)
T ss_pred CCCCCCEEcCCCccccccccCCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC-ccCCCCCcCCCHHHHHHHHHHHHHh
Confidence 888888888887655433 23344556677899999998643 57899999999 9999999999999999999999999
Q ss_pred CCeEEEeccccCCCcccccccccccCCCcceeeeccccCCCcccceeeeecHHHHHhhhccC-CcccccccCCCCCCHHH
Q psy8199 456 NIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKN-NINIFLHSHSYSGNPLA 534 (965)
Q Consensus 456 g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~-~~~~~~~~~t~~~~~~~ 534 (965)
|++||+|||+|||||+|++|+++++|+.||++|+||+|+|||+|+|++++++++++.+.... ....+.|++||+|||++
T Consensus 254 giLlI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~gKgl~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~ 333 (461)
T PRK07482 254 DILLIADEVVTGFGRLGSMFGSDHYGIEPDLITVAKGLTSAYAPLSGSIVGEKVWDVLEQGSDEHGAIGHGWTYSGHPIC 333 (461)
T ss_pred CCEEEEeccccCCCcCcchhhHHhcCCCCCEEEEccccccCccccceeeecHHHHHHHhcccccCCccccCCCCCcCHHH
Confidence 99999999999999999999999999999999999999999779999999999998886421 12246799999999999
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcc-cCCCceeeeeceeEEEEEEEeecCccch------hhHHHHHHHHH
Q psy8199 535 CCAALATLEIFNKDNILQRISQDMKKITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDPEQI------ETFSKKFFVAA 607 (965)
Q Consensus 535 ~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l-~~~~~i~~v~g~G~~~~i~~~~~~~~~~------~~~~~~~~~~l 607 (965)
||+|+++|++++++++.+++++++++|.++|+++ .++|.+.+|+|.|+|+++++. .+.... ......+...|
T Consensus 334 ~Aaa~a~L~~~~~~~l~~~~~~~g~~l~~~L~~l~~~~~~v~~vrG~Glm~giel~-~~~~~~~~~~~~~~~~~~i~~~~ 412 (461)
T PRK07482 334 AAAALANLDILERENLVGNAAEVGAYFRARLRAAFGDHPLVGEVRGVGMLAAVEFV-ADRDDRTPFDPALKIGPQVSAAA 412 (461)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeeceeEEEEEec-cCCCcCCCCChhhHHHHHHHHHH
Confidence 9999999999999999999999999999999987 678889999999999999996 222111 12345788899
Q ss_pred HHcCcEEeec--CCEEEEeCCcccCHHHHHHHHHhhhcccccH
Q psy8199 608 LKNELLLRPI--GNTVYLMPPYILNKNEIQHMTSAIFQTFNEL 648 (965)
Q Consensus 608 ~~~Gi~~~~~--~~~lR~~p~~~~t~~~i~~~~~~l~~~~~~~ 648 (965)
+++||++.+. ++.+||.||+++++++++++++++.+++.++
T Consensus 413 ~~~Gvl~~~~~~~~~i~~~Ppl~it~~ei~~~~~~l~~~l~~~ 455 (461)
T PRK07482 413 LERGVIARAMPHGDILGFAPPLVLTRAEADEIVAIAKDAVDEV 455 (461)
T ss_pred HHCCcEEecCCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999998653 6899999999999999999999998776543
|
|
| >PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-69 Score=610.78 Aligned_cols=402 Identities=49% Similarity=0.877 Sum_probs=360.8
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhH
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGAS 325 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGse 325 (965)
+||||.|||+|||+.+|+|+.+|||+||+|++|+++|++++.+.+..++.++...+|+++|++.+|.+.++|+|++||||
T Consensus 39 ~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~l~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGsE 118 (466)
T PRK07030 39 VWLEDFEGKRYLDAVSSWWVNVFGHANPRINQRIKDQVDQLEHVILAGFSHEPVIELSERLVKITPPGLSRCFYADNGSS 118 (466)
T ss_pred cEEEECCCCEEEEcchhHHhhcCCCCCHHHHHHHHHHHHhcCCccccccCCHHHHHHHHHHHHhCCCCcCEEEEeCCcHH
Confidence 99999999999999999999999999999999999999998776655788999999999999999867889999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHH
Q psy8199 326 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIAR 405 (965)
Q Consensus 326 A~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (965)
||+.|+|+||.|+..+|.++|.+||+++++|||+|.+++++++.+.++..+.++.+++.++|.|+.++...+.....+..
T Consensus 119 Ave~AlKlAr~~~~~~g~t~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~ 198 (466)
T PRK07030 119 AIEVALKMSFHYWRNRGKPRKKRFVTLTNSYHGETLAAMSVGDVALFTETYKPLLLDTIKVPSPDCYLRPEGMSWEEHSR 198 (466)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCcccHHHHhccCCccccccCCccCCCCEEcCCCCccccccCCCHHHHHH
Confidence 99999999999988889889999999999999999999999998777777888888888899887766655556667778
Q ss_pred HHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcc
Q psy8199 406 CAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPD 485 (965)
Q Consensus 406 ~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pD 485 (965)
++++++++++.+.++++||||+||++|+++|.++|+++|+++|+++|++||+++|+|||+|||||+|++|+++++|+.||
T Consensus 199 ~~l~~le~~~~~~~~~iAAvi~EP~iqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~TGfGRtG~~~a~~~~gv~PD 278 (466)
T PRK07030 199 RMFAHMEQTLAEHHDEIAAVIVEPLIQGAGGMRMYHPVYLKLLREACDRYGVHLIHDEIAVGFGRTGTMFACEQAGIRPD 278 (466)
T ss_pred HHHHHHHHHHHhCCCceEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCccccchHHHhcCCCCC
Confidence 89999999998777899999999955999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeccccCCCcccceeeeecHHHHHhhhccC-CcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Q psy8199 486 FLCLSKGITGGYLPLSLVMTTDKIYNSIYYKN-NINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKA 564 (965)
Q Consensus 486 ivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~-~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~ 564 (965)
++||||+|+|||+|+|++++++++++.+..+. ....+.|++||+|||++|++|+++|++++++++.+++++++++|+++
T Consensus 279 iv~~gKgl~gG~~Pi~av~~~~ei~~~~~~~~~~~~~~~h~~T~~gnpla~aaa~a~L~~i~~~~l~~~~~~~G~~l~~~ 358 (466)
T PRK07030 279 FLCLSKALTGGYLPLAAVLTTDTVYQAFYDDYPTLRAFLHSHSYTGNPLACAAALATLDIFEQDNVIENNRALARRMAEA 358 (466)
T ss_pred EEeeehhccCCcccceEEEecHHHHHHHhcccccccccccCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 99999999999889999999999999885321 12346799999999999999999999999999999999999999999
Q ss_pred HHcccCCCceeeeeceeEEEEEEEeecCccc------hhhHHHHHHHHHHHcCcEEeecCCEEEEeCCcccCHHHHHHHH
Q psy8199 565 LTSLITHPKIINFRQKGMIWAFDVIIEDPEQ------IETFSKKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHMT 638 (965)
Q Consensus 565 L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~------~~~~~~~~~~~l~~~Gi~~~~~~~~lR~~p~~~~t~~~i~~~~ 638 (965)
|+++.++|.+.+|+|.|+|+++++. .+... .......+.+.|+++|+++.+.++.+||.||++++++++++++
T Consensus 359 L~~l~~~~~v~~vrG~Gl~~gie~~-~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~g~~i~~~Ppl~it~~eid~~~ 437 (466)
T PRK07030 359 TAHLADHPHVAEVRQTGMILAIEMV-QDKASKTPYPWQERRGLKVYQHALERGALLRPLGSVVYFLPPYVITPEQIDFLA 437 (466)
T ss_pred HHHHhcCCCEEEeEeceeEEEEEec-cCccccccCcchhHHHHHHHHHHHHCCeEEEecCCEEEEECCccCCHHHHHHHH
Confidence 9998778889999999999999996 22211 1112346888999999999998889999999999999999999
Q ss_pred HhhhcccccH
Q psy8199 639 SAIFQTFNEL 648 (965)
Q Consensus 639 ~~l~~~~~~~ 648 (965)
+++.+++..+
T Consensus 438 ~~l~~al~~~ 447 (466)
T PRK07030 438 EVASEGIDIA 447 (466)
T ss_pred HHHHHHHHHH
Confidence 9998777543
|
|
| >PRK07481 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-68 Score=608.40 Aligned_cols=421 Identities=30% Similarity=0.514 Sum_probs=364.3
Q ss_pred ccccccccCcccccccccCCCce-----eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhcccccc-CCCCc
Q psy8199 223 KLGLIHPKNNLKLKWRINLPDDI-----SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVML-SNLTH 296 (965)
Q Consensus 223 ~l~f~~p~~~~~~~~~~~~p~~~-----~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~-~~~~~ 296 (965)
...+|||++....... ..|+.+ +||||.|||+|||+.+|+|+++|||+||+|++|+++|++++.+.+. .++.+
T Consensus 7 ~~~~w~p~~~~~~~~~-~~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~~~ 85 (449)
T PRK07481 7 ARRFWHPMAHPAEMKA-RPPIIIVRGDGVYVYDIDGKKLLDGVGGLWNVNVGHNREEVKEAIVRQLDELEYYSTFDGTTH 85 (449)
T ss_pred cccccCCccccccccc-CCCceEEeccccEEEeCCCCEEEECchhHHhhcCCCCCHHHHHHHHHHHHhccceecccccCC
Confidence 4568999988876420 145555 9999999999999999999999999999999999999998766543 35789
Q ss_pred HHHHHHHHHHHhhcC-CCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccch
Q psy8199 297 KPVIKLSEKLSSLTQ-YKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEI 375 (965)
Q Consensus 297 ~~~~~la~~l~~~~~-~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~ 375 (965)
+...+++++|++.+| .+.++|+|++|||||+|.|+|+||.|++.+|.++|.+||+++++|||+|.+++++++...++..
T Consensus 86 ~~~~~lae~L~~~~~~~~~~~v~f~~sGsEAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~ 165 (449)
T PRK07481 86 PRAIELSYELIDMFAPEGMRRVFFSSGGSDSVETALKLARQYWKVRGQPERTKFISLKQGYHGTHFGGASVNGNTVFRRN 165 (449)
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEcCchHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhccCCCcccccc
Confidence 999999999999984 4578999999999999999999999998888888999999999999999999999988777777
Q ss_pred hcccCCCeeEecCCCCCCCCCC-CChhHHHHHHHHHHHHHHH-hCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHH
Q psy8199 376 YTSLLNKTYIITTPDSRNINKG-NSANEIARCAIFDLEILLK-KNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICN 453 (965)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~le~~l~-~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~ 453 (965)
+.+..+++.+++.|.....+.+ .+.+.+.....+.+|+++. ..++++||||+|| +++++|.++|+++||++|+++|+
T Consensus 166 ~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~i~~~~~~~iAAviiEP-vqg~gG~~~~~~~fl~~lr~lc~ 244 (449)
T PRK07481 166 YEPLLPGCFHVETPWLYRNPFTEQDPEELARICARLLEREIAFQGPDTIAAFIAEP-VQGAGGVIVPPANFWPLVREVCD 244 (449)
T ss_pred cCCCCCCCEEeCCCcccccccCCCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEEec-ccCCcCCccCCHHHHHHHHHHHH
Confidence 7888888888888866554433 2344555666788888886 3357899999999 99999999999999999999999
Q ss_pred hcCCeEEEeccccCCCcccccccccccCCCcceeeeccccCCCcccceeeeecHHHHHhhhccCC-cccccccCCCCCCH
Q psy8199 454 NYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNN-INIFLHSHSYSGNP 532 (965)
Q Consensus 454 ~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~-~~~~~~~~t~~~~~ 532 (965)
+||+++|+|||+|||||+|++|+++++|+.||++|+||+|+|||+|+|++++++++++.+..... ...+.|++||+|||
T Consensus 245 ~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~gKgl~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnp 324 (449)
T PRK07481 245 RHGILLIADEVVTGFGRTGSWFGSRGWGVKPDIMCLAKGITSGYVPLGATMVNARIADAFEANADFGGAIMHGYTYSGHP 324 (449)
T ss_pred HcCCEEEEeehhhCcCcCchhhHhhhcCCCCCEEEEeecccCCCcCceEEEEcHHHHHHHhccCccccccccCCCCCCCH
Confidence 99999999999999999999999999999999999999999998899999999999998864211 12467999999999
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcc-cCCCceeeeeceeEEEEEEEeecCccc------hhhHHHHHHH
Q psy8199 533 LACCAALATLEIFNKDNILQRISQDMKKITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDPEQ------IETFSKKFFV 605 (965)
Q Consensus 533 ~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l-~~~~~i~~v~g~G~~~~i~~~~~~~~~------~~~~~~~~~~ 605 (965)
++|++|+++|++++++++.+++++++++|+++|+++ .+++.+.+++|.|+|+++++. .+..+ .......+..
T Consensus 325 l~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~Glm~gi~l~-~~~~~~~~~~~~~~~~~~~~~ 403 (449)
T PRK07481 325 VACAAALATLDIVVREDLPANAAKRGAYLLEGLQPLKERFELVGDVRGKGLMLALDLV-ADKATREPIDPSKGYANAVAD 403 (449)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcCCCeEEEeecceEEEEEec-ccccccCCCCchhHHHHHHHH
Confidence 999999999999999999999999999999999998 458888999999999999996 22111 1234557888
Q ss_pred HHHHcCcEEeecCCEEEEeCCcccCHHHHHHHHHhhhcccc
Q psy8199 606 AALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFN 646 (965)
Q Consensus 606 ~l~~~Gi~~~~~~~~lR~~p~~~~t~~~i~~~~~~l~~~~~ 646 (965)
.|+++||++.+.++.+||+||+++|+++++++++++.+++.
T Consensus 404 ~~~~~Gvl~~~~g~~i~l~Ppl~it~~eid~~~~~l~~~l~ 444 (449)
T PRK07481 404 VARENGVLVRPSGTKIILSPPLVIQREDVDRIVDALDAGLS 444 (449)
T ss_pred HHHhCCeEEEecCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999888899999999999999999999887653
|
|
| >KOG1404|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-69 Score=549.98 Aligned_cols=386 Identities=29% Similarity=0.424 Sum_probs=342.9
Q ss_pred CCCce-----eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCC
Q psy8199 241 LPDDI-----SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLG 315 (965)
Q Consensus 241 ~p~~~-----~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~ 315 (965)
.|+.| +||+|.+|++|||+.+|.+++++||+||+|++|+.+|+..+-|.+ ..+.+++..++|+.|++.+|.+++
T Consensus 32 ~Pl~Iv~~~~~ylyDe~G~ryLD~f~Gi~tvslGHchP~v~~a~~kQl~~l~H~t-~~~~~~pi~~~Ae~L~s~~P~~l~ 110 (442)
T KOG1404|consen 32 KPLVIVRGEGQYLYDEEGRRYLDAFGGIVTVSLGHCHPDVVAAAVKQLKKLYHTT-SGYLNPPIHDLAEALVSKLPGDLK 110 (442)
T ss_pred CCceEEecceEEEEcCCCceeehhhCCeEEEEcCCCChHHHHHHHHhhhhhEEee-ccccCCcHHHHHHHHHHhCCCCce
Confidence 67766 999999999999999999999999999999999999998876654 678999999999999999999999
Q ss_pred eEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCC
Q psy8199 316 HCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNIN 395 (965)
Q Consensus 316 ~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (965)
.++|+||||||||+|+++||.| ++.-+||.+..+|||.|..++++++...|+..+....+++.+.+.|+.++.+
T Consensus 111 ~vfF~nsGsEANelal~mar~Y------t~~~diIa~r~~YHG~t~~t~glt~~~~~k~~~~~~~~~~~~~~~Pdp~r~~ 184 (442)
T KOG1404|consen 111 VVFFVNSGSEANELALKMARLY------TGNLDIIARRNSYHGNTLYTLGLTGLSPWKQNFPGVASGVHHTMNPDPYRGI 184 (442)
T ss_pred EEEEecCCchHHHHHHHHHHHh------cCCceEEEeeccccCCchhhcccccCCcccccCCCCCCcccccCCCCccccc
Confidence 9999999999999999999999 4888999999999999999999999999998888777788888888877777
Q ss_pred CCCCh-hHHHHHHHHHHHHHHHhC-CCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccc
Q psy8199 396 KGNSA-NEIARCAIFDLEILLKKN-HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK 473 (965)
Q Consensus 396 ~~~~~-~~~~~~d~~~le~~l~~~-~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~ 473 (965)
++.+. .++...-.++++..+... +..+|++|.|| |++.+|++.+|++||+++.++|+++|.++|+|||||||||+|.
T Consensus 185 ~~~~~~~e~~d~~a~~l~d~i~~~~~~~vAafiaEt-IqGvgG~v~~p~GYlka~~~~v~k~Ggl~IaDEVqtGfGRtG~ 263 (442)
T KOG1404|consen 185 FGGSNEEEASDRYAKELEDLILYDGPETVAAFIAET-IQGVGGIVELPPGYLKAAYKVVRKRGGLFIADEVQTGFGRTGH 263 (442)
T ss_pred CCCCchhhhHHHHHHHHHHHHHhcCCCceeEEEeeh-hccCCccccCCchHHHHHHHHHHHcCCEEEehhhhhccccccc
Confidence 55443 333333456666666443 66799999999 9999999999999999999999999999999999999999999
Q ss_pred cccccccCCCcceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHH
Q psy8199 474 FFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQR 553 (965)
Q Consensus 474 ~~~~~~~~~~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~ 553 (965)
+|+++..|+.|||+|++|++|+| +|+||++.++||++.+.+. ..|..||+|||++||+++|+|++++++++.++
T Consensus 264 ~wgfe~h~v~PDIvTmAKgiGnG-~Pl~AVvtt~EIa~v~~~~-----~~~fnTyggnP~a~avg~aVL~Vikee~LqE~ 337 (442)
T KOG1404|consen 264 MWGFESHGVVPDIVTMAKGIGNG-FPLGAVVTTPEIADVLNQK-----SSHFNTYGGNPVACAVGLAVLKVIKEENLQEN 337 (442)
T ss_pred cccccccCCCccHHHHHhhccCC-CcceeeecCHHHHHHHHhc-----cccccccCCCchhHHHHHHHHHHHHHHhHHHH
Confidence 99999999999999999999999 7999999999999999872 22889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcc-cCCCceeeeeceeEEEEEEEeecCccch----hhHHHHHHHHHHHcCcEEeec---CCEEEEeC
Q psy8199 554 ISQDMKKITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDPEQI----ETFSKKFFVAALKNELLLRPI---GNTVYLMP 625 (965)
Q Consensus 554 ~~~~~~~l~~~L~~l-~~~~~i~~v~g~G~~~~i~~~~~~~~~~----~~~~~~~~~~l~~~Gi~~~~~---~~~lR~~p 625 (965)
..+.+.+|+++|.++ .++|.|++|||+|+|++++++ ++.+.+ ......+.+.|.+.|+++.-+ |+++|++|
T Consensus 338 aa~vG~yl~~~l~~l~d~h~iIGdVRG~GLm~GvE~V-~dk~~~~pp~~~~~~~i~~~cke~Gvlvg~g~i~G~vfriaP 416 (442)
T KOG1404|consen 338 AAEVGSYLLEKLAALKDKHPIIGDVRGRGLMLGVELV-SDKSEPKPPATAEGAVIGEQCKELGVLVGKGGIHGNVFRIAP 416 (442)
T ss_pred HHHHHHHHHHHHHHHhhcCCceeecccceeEEEEEEe-cccCCCCCcchHHHHHHHHHHHHhCeeeecccccceEEEecC
Confidence 999999999999999 678999999999999999998 443111 123346789999999999654 47999999
Q ss_pred CcccCHHHHHHHHHhh
Q psy8199 626 PYILNKNEIQHMTSAI 641 (965)
Q Consensus 626 ~~~~t~~~i~~~~~~l 641 (965)
|+++|.+|++.+++..
T Consensus 417 PlciT~edi~f~~~~~ 432 (442)
T KOG1404|consen 417 PLCITKEDIDFAVEYF 432 (442)
T ss_pred CeeccHHHHHHHHHHH
Confidence 9999999997766644
|
|
| >PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-68 Score=606.54 Aligned_cols=423 Identities=39% Similarity=0.704 Sum_probs=367.3
Q ss_pred ccccccccCcccccccccCCCce-----eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcH
Q psy8199 223 KLGLIHPKNNLKLKWRINLPDDI-----SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHK 297 (965)
Q Consensus 223 ~l~f~~p~~~~~~~~~~~~p~~~-----~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~ 297 (965)
.-.+|||++...... ...|+.+ +||||.|||+|||+.+++|+.+|||+||+|++|+++|++++.+.+..++.++
T Consensus 21 ~~~~~~~~~~~~~~~-~~~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~l~~~~~~~~~~~ 99 (460)
T PRK06916 21 KAYVWHPFTQMKDYL-EEDPLIIERGEGRKLYDVNGNEYYDGVSSIWLNVHGHQVPELDEAIREQLNKIAHSTLLGLANV 99 (460)
T ss_pred hhccccccccccccc-cCCCeeEEeccccEEEeCCCCEEEEcchhHHHhhcCCCCHHHHHHHHHHHHhCCCccccccCCH
Confidence 345677765432210 0135555 9999999999999999999999999999999999999999876655567899
Q ss_pred HHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhc
Q psy8199 298 PVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYT 377 (965)
Q Consensus 298 ~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~ 377 (965)
...+|+++|++.+|.++++|+|++||||||+.|+|+||.|++.+|.++|.+||+++++|||.+.+++++++...++..+.
T Consensus 100 ~~~~lae~L~~~~p~~~~~v~f~~SGseAve~AlklAr~~~~~~g~tgr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~ 179 (460)
T PRK06916 100 PSILLAEKLIEVVPEGLKKVFYSDSGATAVEIAIKMAFQYWQNKGKPKKQRFVTLKNAYHGDTIGAVSVGAIDLFHQVYS 179 (460)
T ss_pred HHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCcCCcccHHhHhccCCcccccccC
Confidence 99999999999998667899999999999999999999998888889999999999999999999999999888888888
Q ss_pred ccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCC
Q psy8199 378 SLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNI 457 (965)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~ 457 (965)
++.+++.++|.|+.++.+.+...+.+...|+++++++++++++++||||+||++++++|+++|+++||++|+++|++||+
T Consensus 180 ~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~iAAvi~EP~iqg~gG~~~~~~~fl~~lr~lc~~~g~ 259 (460)
T PRK06916 180 SLLFEAIKMPYPYTYRSPYGNDKAEIVKKHLEELEELLKEKHEEIAAIIVEPLVQGAGGMITMPKGYLKGLRNLCTKYNV 259 (460)
T ss_pred CCCCCCEEeCCCcccccccCCChHHHHHHHHHHHHHHHHhCCCcEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHcCC
Confidence 88888888888866655444344566677899999999877789999999994499999999999999999999999999
Q ss_pred eEEEeccccCCCcccccccccccCCCcceeeeccccCCCcccceeeeecHHHHHhhhccC-CcccccccCCCCCCHHHHH
Q psy8199 458 HLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKN-NINIFLHSHSYSGNPLACC 536 (965)
Q Consensus 458 llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~-~~~~~~~~~t~~~~~~~~a 536 (965)
++|+|||+|||||+|++|+++++|+.||++|+||+|+|||+|+|++++++++++.+..+. ....+.|++||++||++|+
T Consensus 260 llI~DEV~TG~GRtG~~~a~~~~gv~PDiv~~gK~l~gG~~Pi~av~~~~ei~~~~~~~~~~~~~~~~~~T~~gnpl~~a 339 (460)
T PRK06916 260 LFITDEVATGFGRTGKMFACEHENVTPDIMTAGKGLTGGYLPIAITVTTDEIYNAFYGDYEEQKTFFHGHSYTGNPLGCA 339 (460)
T ss_pred EEEeechhhCCCcCchhhHHHhcCCCCCeeeeehhhhcCccccceeeecHHHHHHhhccccccCccccCCCCCCCHHHHH
Confidence 999999999999999999999999999999999999999889999999999998875311 1234678999999999999
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHHcccCCCceeeeeceeEEEEEEEeecCccc------hhhHHHHHHHHHHHc
Q psy8199 537 AALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQ------IETFSKKFFVAALKN 610 (965)
Q Consensus 537 aa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~------~~~~~~~~~~~l~~~ 610 (965)
+++++|++++++++.+++++++++|++.|+++.+++.+.+|+|.|+|+++++. .+..+ .......+...|+++
T Consensus 340 aa~a~l~~l~~~~l~~~~~~~g~~l~~~l~~l~~~~~v~~vrG~Glm~giel~-~~~~~~~~~~~~~~~~~~i~~~~~~~ 418 (460)
T PRK06916 340 VALANLELYEKTNLIEQVARKTEYVATQLEDLFALKHVGDIRQLGLMVGIELV-KNKETKEPFEWTERVGVQVCKRSREL 418 (460)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhhcCCCeEEeecCCceeeEEee-cccccccCCCchhhHHHHHHHHHHHC
Confidence 99999999998999999999999999999999778888999999999999997 22111 112345688899999
Q ss_pred CcEEeecCCEEEEeCCcccCHHHHHHHHHhhhccccc
Q psy8199 611 ELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNE 647 (965)
Q Consensus 611 Gi~~~~~~~~lR~~p~~~~t~~~i~~~~~~l~~~~~~ 647 (965)
||++.+.++.+||.||+++++++++++++++.+++.+
T Consensus 419 Gvl~~~~g~~l~~~Ppl~it~~~id~~~~~l~~~l~~ 455 (460)
T PRK06916 419 GMLTRPLGNTIVFMPPLASTIDELDEMLRILYKAISD 455 (460)
T ss_pred CeEEEecCCEEEEeCCcccCHHHHHHHHHHHHHHHHh
Confidence 9999998899999999999999999999998876643
|
|
| >PRK07678 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-67 Score=600.94 Aligned_cols=397 Identities=29% Similarity=0.477 Sum_probs=346.0
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhH
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGAS 325 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGse 325 (965)
+||||.|||+|||+.+|+|+.+|||+||+|++|+++|++++.+.+ ..+.++...+|+++|++.+|. .++|+|++||||
T Consensus 39 ~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~-~~~~~~~~~~lae~l~~~~~~-~~~v~f~~sGse 116 (451)
T PRK07678 39 AWVTDIQGNRYLDGMSGLWCVNVGYGRKELAEAAYEQLKTLSYFP-LTQSHEPAIKLAEKLNEWLGG-EYVIFFSNSGSE 116 (451)
T ss_pred eEEEeCCCCEEEEccccHHhhcCCCCCHHHHHHHHHHHHhcCccc-cccCCHHHHHHHHHHHHhCCC-CCEEEEeCCcHH
Confidence 999999999999999999999999999999999999999876554 346789999999999999874 469999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHH
Q psy8199 326 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIAR 405 (965)
Q Consensus 326 A~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (965)
|++.|+|+||.|++.+|+++|.+||.++++|||++.+++++++.+.++..+.++.+++.++|.|+..+.+.+...+.+..
T Consensus 117 A~e~AlklAr~~t~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (451)
T PRK07678 117 ANETAFKIARQYHAQKGEPHRYKFISRYRAYHGNSMGALAATGQAQRKYKYEPLAPGFLHVPPPDCYRMPGIESEDIYDL 196 (451)
T ss_pred HHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhhcCCCcccccccCCCCCCCEEeCCCccccccccCChHHHHH
Confidence 99999999999988888888999999999999999999999998777777778888888888887665543333333444
Q ss_pred HHHHHHHHHHH-hCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCc
Q psy8199 406 CAIFDLEILLK-KNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWP 484 (965)
Q Consensus 406 ~d~~~le~~l~-~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~p 484 (965)
..++.++++++ ..++++||||+|| +++++|+++|+++||++|+++|++||+++|+|||+|||||+|++|+++++|+.|
T Consensus 197 ~~~~~l~~~~~~~~~~~iAAvi~EP-iqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~~~~~~gv~P 275 (451)
T PRK07678 197 ECVKEIDRVMTWELSETIAAVIMEP-IITGGGVLMPPQDYMKAVKEICQKHGALLISDEVICGFGRTGKAFGFMNYGVKP 275 (451)
T ss_pred HHHHHHHHHHHhcCCCceEEEEEcc-ccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhcCCcCchhHHHHhcCCCC
Confidence 45667888886 3367899999999 999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Q psy8199 485 DFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKA 564 (965)
Q Consensus 485 Divt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~ 564 (965)
|++|+||+|+|||+|+|++++++++++.+........+.|++||++||++|++|+++|++++++++.+++++++++|+++
T Consensus 276 Divt~gK~lggG~~Pi~av~~~~~i~~~~~~~~~~~~~~h~~T~~gnp~~~aaa~a~l~~l~~~~~~~~~~~~g~~l~~~ 355 (451)
T PRK07678 276 DIITMAKGITSAYLPLSATAVKKEIYEAFKGKGEYEHFRHVNTFGGNPAACALALKNLEIMENENLIERSAQLGELLLEQ 355 (451)
T ss_pred CEEEeecccccCCcceeEEEEcHHHHHHHhccCcccccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 99999999999988999999999999988642222346799999999999999999999999889999999999999999
Q ss_pred HHcc-cCCCceeeeeceeEEEEEEEeecCccc----hhhHHHHHHHHHHHcCcEEeec-------CCEEEEeCCcccCHH
Q psy8199 565 LTSL-ITHPKIINFRQKGMIWAFDVIIEDPEQ----IETFSKKFFVAALKNELLLRPI-------GNTVYLMPPYILNKN 632 (965)
Q Consensus 565 L~~l-~~~~~i~~v~g~G~~~~i~~~~~~~~~----~~~~~~~~~~~l~~~Gi~~~~~-------~~~lR~~p~~~~t~~ 632 (965)
|+++ .+++.+.+|+|.|+|+++++. .+..+ .......+...|+++||++.+. ++.+||+||+++|++
T Consensus 356 l~~~~~~~~~v~~vrg~Gl~~~i~~~-~~~~~~~~~~~~~a~~i~~~l~~~Gv~~~~~g~~v~~~~~~lrl~Ppl~it~~ 434 (451)
T PRK07678 356 LKEELGEHPLVGDIRGKGLLVGIELV-NDKETKEPADNDKVASVVAACKEKGLIIGKNGDTVAGYNNVLTLSPPLVISSE 434 (451)
T ss_pred HHHHHhcCCCEEEEEeeceEEEEEEe-cCCcccCcCchHHHHHHHHHHHHCCcEEeecCccccCCCCEEEEECCCcCCHH
Confidence 9765 778888999999999999996 22111 1234557888999999998763 278999999999999
Q ss_pred HHHHHHHhhhcccc
Q psy8199 633 EIQHMTSAIFQTFN 646 (965)
Q Consensus 633 ~i~~~~~~l~~~~~ 646 (965)
+|+++++++.+++.
T Consensus 435 eid~~~~~l~~~l~ 448 (451)
T PRK07678 435 EIAFIVGTLKTALE 448 (451)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999876553
|
|
| >PLN02760 4-aminobutyrate:pyruvate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-67 Score=602.88 Aligned_cols=422 Identities=27% Similarity=0.463 Sum_probs=358.2
Q ss_pred ccccccCcccccccccCCCce-----eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccC-CCCcHH
Q psy8199 225 GLIHPKNNLKLKWRINLPDDI-----SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLS-NLTHKP 298 (965)
Q Consensus 225 ~f~~p~~~~~~~~~~~~p~~~-----~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~-~~~~~~ 298 (965)
.+|||++...... ...|+++ +||||.|||+||||.+|+|+.+|||+||+|++|+++|++++.+++.. .+.+++
T Consensus 56 ~~~~p~~~~~~~~-~~~p~~i~~~~G~~l~D~dG~~ylD~~sg~~~~~lGh~hp~v~~Av~~ql~~~~~~~~~~~~~~~~ 134 (504)
T PLN02760 56 DMLAPFTAGWQST-DLEPLVIEKSEGSYVYDINGKKYLDALAGLWCTALGGSEPRLVAAATEQLNKLPFYHSFWNRTTKP 134 (504)
T ss_pred CcccCcccccccc-cCCCceEEeeeeeEEEECCCCEEEEcCcCHHhcccCCCCHHHHHHHHHHHhhccceecccccCcHH
Confidence 5689988876532 1245555 99999999999999999999999999999999999999987654322 467899
Q ss_pred HHHHHHHHHhhc-CCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhc
Q psy8199 299 VIKLSEKLSSLT-QYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYT 377 (965)
Q Consensus 299 ~~~la~~l~~~~-~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~ 377 (965)
..+|+++|.+.+ +.+.++|+|++||||||++|+|+||.|++.+|.++|.+||+++++|||++.+++++++.+.++..+.
T Consensus 135 ~~~lae~L~~~~~~~~~~~v~f~~SGsEA~e~AlKlAr~~~~~~g~~~r~~iI~~~~~yHG~t~~a~slsg~~~~~~~~~ 214 (504)
T PLN02760 135 SLDLAKELLEMFTARKMGKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARSKSYHGSTLISASLSGLPALHQKFD 214 (504)
T ss_pred HHHHHHHHHhhcCCCCCCEEEEeCChHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCccCChHhhhhccCChhhccCCC
Confidence 999999999985 4456799999999999999999999998888888899999999999999999999998776666666
Q ss_pred ccCCCeeEecCCCCCCCC-CCCChhHHHHHHHHHHHHHHHh-CCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhc
Q psy8199 378 SLLNKTYIITTPDSRNIN-KGNSANEIARCAIFDLEILLKK-NHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNY 455 (965)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~~le~~l~~-~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~ 455 (965)
+..+.+.+++.|..++.. .....+.+...+.++|++++.+ .++++|+||+|| +++++|+++||++||++|+++|++|
T Consensus 215 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~iAAvI~EP-v~g~gG~~~p~~~yl~~lr~lc~~~ 293 (504)
T PLN02760 215 LPAPFVLHTDCPHYWRFHLPGETEEEFSTRLADNLENLILKEGPETIAAFIAEP-VMGAGGVIPPPATYFEKIQAVLKKY 293 (504)
T ss_pred CCCCCcEEeCCCcccccCCCCCcHHHHHHHHHHHHHHHHHhcCCCceEEEEECC-ccCCCCCcCCCHHHHHHHHHHHHHc
Confidence 666667777777644432 1223334444566778877753 356799999999 9999999999999999999999999
Q ss_pred CCeEEEeccccCCCcccccccccccCCCcceeeeccccCCCcccceeeeecHHHHHhhhccC-CcccccccCCCCCCHHH
Q psy8199 456 NIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKN-NINIFLHSHSYSGNPLA 534 (965)
Q Consensus 456 g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~-~~~~~~~~~t~~~~~~~ 534 (965)
|++||+|||+|||||+|++|+++++|+.||++||||+|+|||+|+|++++++++++.+.... ....+.|++||++||++
T Consensus 294 g~lLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~lggG~~PigAv~~~~~i~d~~~~~~~~~~~~~h~~T~~gnPl~ 373 (504)
T PLN02760 294 DILFIADEVICAFGRLGTMFGCDKYNIKPDLVSLAKALSSAYMPIGAVLVSPEISDVIHSQSNKLGSFAHGFTYSGHPVS 373 (504)
T ss_pred CCEEEecchhhCCcccchhhHHHhcCCCCcEEEecccccCCccccceEeecHHHHhhhhcccccccCcccCCCCCCCHHH
Confidence 99999999999999999999999999999999999999999889999999999999886421 12246799999999999
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcccCCCceeeeeceeEEEEEEEeecCccch------hhHHHHHHHHHH
Q psy8199 535 CCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQI------ETFSKKFFVAAL 608 (965)
Q Consensus 535 ~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~------~~~~~~~~~~l~ 608 (965)
|++|+++|++++++++.+++++++++|+++|+++.+++.+.+|+|.|+|+++++. .+..+. ......+.+.|+
T Consensus 374 ~Aaala~Le~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~v~~vrG~Gl~~gie~~-~~~~~~~~~~~~~~~~~~i~~~~~ 452 (504)
T PLN02760 374 CAVALEALKIYKERNIPEHVNKIAPRFQDGIKAFSGSPIIGEIRGTGLILGTEFV-DNKSPNDPFPAEWGVGAYFGAECK 452 (504)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhcCCCeeeEEeCceEEEEEEe-cCCcccccccchhHHHHHHHHHHH
Confidence 9999999999998899999999999999999999778888999999999999996 222111 123556888999
Q ss_pred HcCcEEeecCCEEEEeCCcccCHHHHHHHHHhhhcccccHH
Q psy8199 609 KNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNELD 649 (965)
Q Consensus 609 ~~Gi~~~~~~~~lR~~p~~~~t~~~i~~~~~~l~~~~~~~~ 649 (965)
++||++.+.++.+||+||+++++++|+++++++.+++..++
T Consensus 453 ~~Gvl~~~~g~~lrl~Ppl~it~eeid~~~~~l~~al~~~~ 493 (504)
T PLN02760 453 KRGMLVRVAGDNIMMSPPLIITPEEVDELISIYGKALKATE 493 (504)
T ss_pred hCCcEEEecCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999998888999999999999999999999987776553
|
|
| >PRK07483 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-67 Score=598.04 Aligned_cols=399 Identities=29% Similarity=0.518 Sum_probs=348.2
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhH
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGAS 325 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGse 325 (965)
+||||.|||+||||.+|+|+++|||+||+|++|+++|++++.+.+...+.++...+|+++|++.+|.+.++|+|++||||
T Consensus 22 ~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~av~~ql~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGsE 101 (443)
T PRK07483 22 IYLIDATGKRYLDASGGAAVSCLGHSHPRVIAAIHAQIDRLAYAHTSFFTTEPAEALADRLVAAAPAGLEHVYFVSGGSE 101 (443)
T ss_pred EEEEeCCCCEEEEcCccHhhhccCCCCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCCCCEEEEcCCcHH
Confidence 99999999999999999999999999999999999999987655444577899999999999999867889999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCC-CCCChhHHH
Q psy8199 326 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNIN-KGNSANEIA 404 (965)
Q Consensus 326 A~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 404 (965)
|+|.|+|+||.|++.+|.++|.+||+++++|||+|.+++++++...++..+.+..+++.++|.|..++.. .+.....+.
T Consensus 102 Ave~AlklAr~~~~~~g~~~r~~Ii~~~~~YHG~t~~a~s~s~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (443)
T PRK07483 102 AVEAALKLARQYFVEIGQPQRRHFIARRQSYHGNTLGALAIGGNAWRREPFAPLLIEAHHVSPCYAYREQRAGESDEAYG 181 (443)
T ss_pred HHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcCHHHhhhcCCcccccccCCCCCCCEEeCCCccccccccCCCHHHHH
Confidence 9999999999998888888999999999999999999999999877777777777778888877544433 123344455
Q ss_pred HHHHHHHHHHHHh-CCCcEEEEEEcccccc-CCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCC
Q psy8199 405 RCAIFDLEILLKK-NHNKIAAIIIEPLVQC-AGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEI 482 (965)
Q Consensus 405 ~~d~~~le~~l~~-~~~~~aaii~ep~v~~-~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~ 482 (965)
..+++++++++.. ..+++||||+|| +++ .+|+++|+++||++|+++|++||+++|+|||+|||||+|++|+++++|+
T Consensus 182 ~~~~~~l~~~~~~~~~~~iAAvivEP-iqg~~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~~~a~~~~gv 260 (443)
T PRK07483 182 QRLADELEAKILELGPDTVAAFVAET-VVGATAGAVPPVPGYFKRIREVCDRYGVLLILDEVMCGMGRTGTLFACEEDGV 260 (443)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEEeC-cccCcCCeEeCCHHHHHHHHHHHHHhCCEEEEecceeCcccCcHHHHHhhcCC
Confidence 5567888887753 357899999999 998 5799999999999999999999999999999999999999999999999
Q ss_pred CcceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Q psy8199 483 WPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKIT 562 (965)
Q Consensus 483 ~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~ 562 (965)
.||++|+||+|+||++|+|++++++++++.+.. ....+.|++||++||++|++++++|++++++++++++++++++|+
T Consensus 261 ~PDiv~~gK~l~gG~~Pi~av~~~~~i~~~~~~--~~~~~~h~~T~~gnpl~~aaa~a~l~~i~~~~l~~~~~~~g~~l~ 338 (443)
T PRK07483 261 APDLVTIAKGLGAGYQPIGAVLASDRIYDAIAD--GSGFFQHGHTYLGHATACAAALAVQRVIAEDGLLANVRARGEQLR 338 (443)
T ss_pred CCCeeeehhhhccCccccEEEEEcHHHHHHHhc--CCCccccCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 999999999999997799999999999998864 122457999999999999999999999999999999999999999
Q ss_pred HHHHcc-cCCCceeeeeceeEEEEEEEeecCccc------hhhHHHHHHHHHHHcCcEEeec--------CCEEEEeCCc
Q psy8199 563 KALTSL-ITHPKIINFRQKGMIWAFDVIIEDPEQ------IETFSKKFFVAALKNELLLRPI--------GNTVYLMPPY 627 (965)
Q Consensus 563 ~~L~~l-~~~~~i~~v~g~G~~~~i~~~~~~~~~------~~~~~~~~~~~l~~~Gi~~~~~--------~~~lR~~p~~ 627 (965)
++|+++ .++|.+.+|||.|+|+++++. .+..+ .......+.+.++++|+++.+. ++++||.||+
T Consensus 339 ~~L~~l~~~~~~i~~vRG~Glm~gie~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~~~~~~~~~~~~l~~~PpL 417 (443)
T PRK07483 339 ARLRERLGQHPHVGDIRGRGLFVGVELV-ADRATKAPFDPALKLHARIKREAMARGLMVYPMGGTIDGVRGDHVLLAPPF 417 (443)
T ss_pred HHHHHHHhcCCCeeeEeecccEEEEEEe-ecccccCCCCchhhHHHHHHHHHHHCCcEEEecCccccCCCCCEEEEECCC
Confidence 999887 678888999999999999996 22111 1123456888999999999764 3699999999
Q ss_pred ccCHHHHHHHHHhhhcccccH
Q psy8199 628 ILNKNEIQHMTSAIFQTFNEL 648 (965)
Q Consensus 628 ~~t~~~i~~~~~~l~~~~~~~ 648 (965)
++++++++++++++.+++.++
T Consensus 418 ~it~~eid~~~~~l~~~l~~~ 438 (443)
T PRK07483 418 IITAAQIDEIVERLGDAIDAA 438 (443)
T ss_pred CCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999998877543
|
|
| >PRK07036 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-67 Score=598.43 Aligned_cols=422 Identities=27% Similarity=0.445 Sum_probs=362.9
Q ss_pred cccccccCcccccccccCCCce-----eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCC-CCcH
Q psy8199 224 LGLIHPKNNLKLKWRINLPDDI-----SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSN-LTHK 297 (965)
Q Consensus 224 l~f~~p~~~~~~~~~~~~p~~~-----~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~-~~~~ 297 (965)
-.+|||+....... ...|+.+ +||||.|||+|||+.+|+|+.++||+||+|++|+++|++++.+.+... +.++
T Consensus 17 ~~~~~~~~~~~~~~-~~~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~~~~~~~~ 95 (466)
T PRK07036 17 RHLLHPWHDFSSLG-KEGSLVIVEAEGIYVTDADGRRYLDGIGGMWCVNVGYGREEMADAIADQARRLPYYTPFGDMTNA 95 (466)
T ss_pred cccccCccCccccc-cCCCceEEeCceeEEEECCCCEEEECcccHHhhcCCCCCHHHHHHHHHHHHhCcccccccccCCH
Confidence 35677776543221 0135555 999999999999999999999999999999999999999876654443 7899
Q ss_pred HHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhc
Q psy8199 298 PVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYT 377 (965)
Q Consensus 298 ~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~ 377 (965)
+..+|+++|++..|.+.++|+|++||||||+.|+|+||.|+..+|.++|.+||+++++|||+|.+++++++.+.++..|.
T Consensus 96 ~~~~lae~L~~~~p~~~~~v~f~~sGseAve~AlklAr~~~~~~g~t~r~~Ii~~~~~YHG~t~~a~s~~~~~~~~~~~~ 175 (466)
T PRK07036 96 PAAELAAKLAELAPGDLNHVFLTTGGSTAVDSALRFVHYYFNVRGRPAKKHIITRGDAYHGSTYLTASLTGKAADRTEFD 175 (466)
T ss_pred HHHHHHHHHHHhCCCCcCEEEEeCCchHHHHHHHHHHHHHHHhcCCCCccEEEEEcCccCCccHhhhcccCCCccccccc
Confidence 99999999999998678899999999999999999999998888888899999999999999999999999887777888
Q ss_pred ccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHh-CCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcC
Q psy8199 378 SLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKK-NHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYN 456 (965)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~-~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g 456 (965)
+..+.+.++|.|..++.+.+.+...+...+++.+++.+.. .++++||||+|| +++++|+++|+++||++|+++|++||
T Consensus 176 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~iAavi~EP-v~g~gG~~~p~~~yl~~lr~lc~~~g 254 (466)
T PRK07036 176 YASDLVHHLSSPNPYRRPAGMSEAAFCDFLVDEFEDKILSLGADNIAAFIAEP-ILGSGGVIVPPPGYHARMREICRRYD 254 (466)
T ss_pred CCCCCcEEecCCcccccccCCChHHHHHHHHHHHHHHHHHcCCCceEEEEEeC-CcCCCCCccCCHHHHHHHHHHHHHcC
Confidence 7777788888887665555555455555567778877754 357899999999 99999999999999999999999999
Q ss_pred CeEEEeccccCCCccccccccc-ccCCCcceeeeccccCCCcccceeeeecHHHHHhhhccC-CcccccccCCCCCCHHH
Q psy8199 457 IHLIADEIAVGCGRTGKFFACE-HAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKN-NINIFLHSHSYSGNPLA 534 (965)
Q Consensus 457 ~llI~DEv~tg~gr~G~~~~~~-~~~~~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~-~~~~~~~~~t~~~~~~~ 534 (965)
+++|+|||+|||||+|++|+++ ++|+.||++|+||+|+|||+|+|++++++++++.+.... ....+.|++||++||++
T Consensus 255 ~llI~DEV~tGfGRtG~~~~~~~~~gv~PDivt~gK~l~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~~~~T~~gnpl~ 334 (466)
T PRK07036 255 ILYISDEVVTGFGRLGHFFASEAVFGIQPDIITFAKGLTSGYQPLGAVIISERLLDVISGPNAKGNVFTHGFTYSGHPVA 334 (466)
T ss_pred CEEEEeechhCCCcCchhhhhhhhcCCCCCEEEEccccccCccccEEEEEcHHHHHHHhcccCcCcccccCCCCCCCHHH
Confidence 9999999999999999999998 789999999999999999889999999999999886411 11236789999999999
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcccCCCceeeeeceeEEEEEEEeecCccc------hhhHHHHHHHHHH
Q psy8199 535 CCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQ------IETFSKKFFVAAL 608 (965)
Q Consensus 535 ~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~------~~~~~~~~~~~l~ 608 (965)
|++++++|++++++++.+++++++++|+++|+++.++|.+.+|+|.|+|+++++. .+... .......+.+.|+
T Consensus 335 ~aaa~a~Le~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~v~~vrG~Gl~~~ve~~-~~~~~~~~~~~~~~~~~~~~~~~~ 413 (466)
T PRK07036 335 CAAALKNIEIMEREGLCEHVREVGPYFEERLASLRELPLVGDVRGDHLMACVECV-ADKGSKALLPEDIAIGQRIDRHCQ 413 (466)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhccCCCEEEEEeeceEEEEEEc-cCccccCCCCchhHHHHHHHHHHH
Confidence 9999999999998999999999999999999988778889999999999999996 22111 1224556888999
Q ss_pred HcCcEEeecCCEEEEeCCcccCHHHHHHHHHhhhcccccH
Q psy8199 609 KNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNEL 648 (965)
Q Consensus 609 ~~Gi~~~~~~~~lR~~p~~~~t~~~i~~~~~~l~~~~~~~ 648 (965)
++||++.+.++.+||+||+++|+++|+++++++.+++..+
T Consensus 414 ~~Gvl~~~~~~~~~l~Ppl~it~~~id~~~~~l~~al~~~ 453 (466)
T PRK07036 414 ERGLLVRPLEHLCVLSPPLIITRAQIDEIVAILRAAIEET 453 (466)
T ss_pred HCCcEEeecCCEEEEeCCCcCCHHHHHHHHHHHHHHHHHH
Confidence 9999999887899999999999999999999998877554
|
|
| >PRK07480 putative aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-67 Score=596.03 Aligned_cols=399 Identities=28% Similarity=0.477 Sum_probs=346.6
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhcccccc-CCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChh
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVML-SNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGA 324 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~-~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGs 324 (965)
+||||.|||+|||+.+|+|+.++||+||+|++|+++|++++.+... ..+.++...+|+++|++.+|.+.++|+|++|||
T Consensus 42 ~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGs 121 (456)
T PRK07480 42 VYLWDSEGNKILDGMAGLWCVNVGYGRKELADAAARQMRELPYYNTFFKTTHPPAIELAAKLAEVAPPGFNHVFFTNSGS 121 (456)
T ss_pred eEEEeCCCCEEEEccchHHHhcCCCCCHHHHHHHHHHHHhcCCcccccccCCHHHHHHHHHHHHhCCCCcCEEEEeCCcH
Confidence 9999999999999999999999999999999999999998765432 357899999999999999986788999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHH
Q psy8199 325 SAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIA 404 (965)
Q Consensus 325 eA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (965)
||++.|+|+||.|++.+|.++|.+||.++++|||+|.+++++++...++..+.+..+++.+++.|..+++..+.+.+.+.
T Consensus 122 eA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~tl~a~s~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 201 (456)
T PRK07480 122 EANDTVLRMVRHYWALKGKPQKKVIISRKNGYHGSTVAGASLGGMKYMHEQGDLPIPGIVHIDQPYWFGEGGDMTPEEFG 201 (456)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhhccCChhhhcccCCCCCCCeecCCCcccccccCCChHHHH
Confidence 99999999999998888888899999999999999999999998766565555556677788877665544333344454
Q ss_pred HHHHHHHHHHHHh-CCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCC
Q psy8199 405 RCAIFDLEILLKK-NHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIW 483 (965)
Q Consensus 405 ~~d~~~le~~l~~-~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~ 483 (965)
..++++|++.+.+ .+++++|||+|| +++++|+++||++||++|+++|++||+++|+|||+|||||+|++|+++++|+.
T Consensus 202 ~~~~~~l~~~~~~~~~~~vAAvi~EP-iqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~ 280 (456)
T PRK07480 202 LAAARQLEAKILELGADNVAAFIGEP-IQGAGGVIIPPATYWPEIQRICRKYDILLVADEVICGFGRTGEWFGSQHFGIK 280 (456)
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEEcc-ccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcchhhhhhcCCC
Confidence 4456888766643 357899999999 99999999999999999999999999999999999999999999999999999
Q ss_pred cceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHH-HHHHHHHH
Q psy8199 484 PDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRI-SQDMKKIT 562 (965)
Q Consensus 484 pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~-~~~~~~l~ 562 (965)
||++||||+|+|||+|+|++++++++++.+.. ....+.|++||++||++|++|+++|++++++++.+++ ++++++|+
T Consensus 281 PDiv~~gK~l~gG~~Pi~av~~~~~i~~~~~~--~~~~~~~~~T~~gnpl~~Aaa~a~L~~l~~~~l~~~~~~~~g~~l~ 358 (456)
T PRK07480 281 PDLMTIAKGLTSGYIPMGAVGVGDRVAEVLIE--EGGEFNHGFTYSGHPVAAAVALANLRILRDEGIVERVRDDTGPYLQ 358 (456)
T ss_pred CCeeeeehhhccCCccceEEEEcHHHHHHHhc--CCCCcccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 99999999999998899999999999998842 1134679999999999999999999999999999999 69999999
Q ss_pred HHHHcccCCCceeeeeceeEEEEEEEeecCccch------hhHHHHHHHHHHHcCcEEeecCCEEEEeCCcccCHHHHHH
Q psy8199 563 KALTSLITHPKIINFRQKGMIWAFDVIIEDPEQI------ETFSKKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQH 636 (965)
Q Consensus 563 ~~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~------~~~~~~~~~~l~~~Gi~~~~~~~~lR~~p~~~~t~~~i~~ 636 (965)
++|+++.++|.+.+|+|.|+|+++++. .+.... ......+.+.|+++||++.+.++.+||+||++++++++++
T Consensus 359 ~~l~~l~~~~~i~~vrG~Glm~gie~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~~~~l~~~Ppl~it~~eid~ 437 (456)
T PRK07480 359 KRLRELADHPLVGEVRGVGLVGAIELV-KDKATRERFEAGGGVGTICRDHCFANGLIMRAVGDRMIISPPLVITHAEIDE 437 (456)
T ss_pred HHHHHhhcCCCeeeEEeecceEEEEEe-ccccccccCcchhhHHHHHHHHHHHCCcEEeecCCEEEEECCCCCCHHHHHH
Confidence 999988778888999999999999996 221111 1123467788999999999877899999999999999999
Q ss_pred HHHhhhcccccH
Q psy8199 637 MTSAIFQTFNEL 648 (965)
Q Consensus 637 ~~~~l~~~~~~~ 648 (965)
+++++.+++..+
T Consensus 438 ~~~~l~~al~~~ 449 (456)
T PRK07480 438 LVEKARKALDAT 449 (456)
T ss_pred HHHHHHHHHHHH
Confidence 999998877543
|
|
| >PRK06105 aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-66 Score=589.96 Aligned_cols=402 Identities=28% Similarity=0.489 Sum_probs=351.2
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhcccccc-CCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChh
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVML-SNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGA 324 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~-~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGs 324 (965)
+||||.|||+||||.+|+|+.++||+||+|++|+++|++++.+.+. +.+.++...+++++|++.+|.+.++|+|++|||
T Consensus 40 ~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGs 119 (460)
T PRK06105 40 IYVYDDAGKRYIEGMAGLWSVALGFSEQRLVEAAARQMKKLPFYHTFSHKSHGPVIDLAEKLVAMAPVPMSKVFFTNSGS 119 (460)
T ss_pred EEEEECCCCEEEEcchhHHhccCCCCCHHHHHHHHHHHHhCCCeecccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCcH
Confidence 9999999999999999999999999999999999999998765432 346799999999999999986688999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCC-CCCChhHH
Q psy8199 325 SAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNIN-KGNSANEI 403 (965)
Q Consensus 325 eA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 403 (965)
|||++|+|+|+.|++.+|.++|.+||+++++|||+|.+++++++.+.++..+.+..+++.++|.|..+... .+...+.+
T Consensus 120 eAve~AlKlar~~~~~~g~t~r~~il~~~~~yHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 199 (460)
T PRK06105 120 EANDTVVKLVWYYNNALGRPEKKKIISRQRGYHGVTIASASLTGLPNNHRSFDLPLDRILHTGCPHYYRFGLPGESEEAF 199 (460)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcEEEEecCccCCcchhheeccCCcccccccCCCCCCCEEcCCCcccccccCCCChHHH
Confidence 99999999999998888888999999999999999999999998777777777777788888888655432 12233445
Q ss_pred HHHHHHHHHHHHHhC-CCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCC
Q psy8199 404 ARCAIFDLEILLKKN-HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEI 482 (965)
Q Consensus 404 ~~~d~~~le~~l~~~-~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~ 482 (965)
...+++++++++... .++++|||+|| +++++|+++|+++||++|+++|++||+++|+|||||||||+|++|+++++++
T Consensus 200 ~~~~~~~le~~~~~~~~~~iAavIvEP-iqg~gG~~~~~~~yl~~lr~lc~~~~~llI~DEv~tG~GRtG~~f~~~~~~v 278 (460)
T PRK06105 200 ATRLANELEALILAEGPDTIAAFIGEP-VMGAGGVIVPPKTYWEKIQAVLRKYDILLVADEVICGFGRTGNMFGCETFGI 278 (460)
T ss_pred HHHHHHHHHHHHHHcCCCceEEEEEcc-ccCCCCCccCCHHHHHHHHHHHHHcCCeEEEeccccCCCcCchhhhHHhcCC
Confidence 556778888888543 57899999999 9999999999999999999999999999999999999999999999999999
Q ss_pred CcceeeeccccCCCcccceeeeecHHHHHhhhccC-CcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q psy8199 483 WPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKN-NINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKI 561 (965)
Q Consensus 483 ~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~-~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l 561 (965)
.||++|+||+|+||++|+|++++++++++.+.... ....+.|++||++||++|++++++|++++++++.+++++++++|
T Consensus 279 ~PDi~~~gK~lggG~~P~~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~i~~~~l~~~v~~~g~~l 358 (460)
T PRK06105 279 KPDILVMSKQLSSSYQPLSAVLMNEKVYDPIADESGKIGTFGHGFTASGHPVAAAVALENLAIIEERDLVGNAAERGARL 358 (460)
T ss_pred CCCeeeeecccccCcccceEEEEcHHHHHHHhcccccCcccccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 99999999999999889999999999999886421 11235689999999999999999999999999999999999999
Q ss_pred HHHHHcccCCCceeeeeceeEEEEEEEeecCccch------hhHHHHHHHHHHHcCcEEeecCCEEEEeCCcccCHHHHH
Q psy8199 562 TKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQI------ETFSKKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQ 635 (965)
Q Consensus 562 ~~~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~------~~~~~~~~~~l~~~Gi~~~~~~~~lR~~p~~~~t~~~i~ 635 (965)
+++|+++.++|.+.+|+|.|+|+++++. .+..+. ...+..+...++++||++.+.++++||+||+++++++++
T Consensus 359 ~~~L~~l~~~~~v~~vrG~Gl~~gie~~-~~~~~~~~~~~~~~~a~~i~~~~~~~Gvl~~~~g~~i~l~Ppl~it~~eid 437 (460)
T PRK06105 359 QARLRALADHPLVGEVRGVGLIAAVELV-ADKATKTPFEPPGKVGARANAAAHEHGVISRAMGDTLAFCPPLIITAAQVD 437 (460)
T ss_pred HHHHHHhhcCCCeEEEEecceEEEEEEe-cCcccCCCCCchhHHHHHHHHHHHHCCeEEEecCCEEEEECCCccCHHHHH
Confidence 9999999778889999999999999996 221111 223456888899999999998889999999999999999
Q ss_pred HHHHhhhcccccHH
Q psy8199 636 HMTSAIFQTFNELD 649 (965)
Q Consensus 636 ~~~~~l~~~~~~~~ 649 (965)
++++++.+++.++.
T Consensus 438 ~~~~~l~~~l~~~~ 451 (460)
T PRK06105 438 EMVDRFGRALDDVA 451 (460)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999988776543
|
|
| >PRK06917 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-66 Score=588.11 Aligned_cols=398 Identities=29% Similarity=0.480 Sum_probs=350.6
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhH
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGAS 325 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGse 325 (965)
+||||.|||+|||+.+|+|+.+|||+||+|++|+++|++++.+.....+.+++..+|+++|++.+|...++++|++||||
T Consensus 23 ~~l~D~dG~~ylD~~~g~~~~~lGh~hp~v~~Ai~~ql~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGsE 102 (447)
T PRK06917 23 VYLYDQNGNKYFDGSSGAVTAGIGHGVKEIADAIKEQAEEVSFVYRSQFTSEPAEKLAKKLSDLSPGDLNWSFFVNSGSE 102 (447)
T ss_pred eEEEeCCCCEEEECchhHHhccCCCCCHHHHHHHHHHHhhCcCccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCChHH
Confidence 99999999999999999999999999999999999999987555444578999999999999999866789999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHH
Q psy8199 326 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIAR 405 (965)
Q Consensus 326 A~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (965)
|++.|+|+|+.|++.+|.++|.+|++++++|||+|.+++++++...++..+.++.+++..+|.|.....+.+...+.+..
T Consensus 103 Ave~AlklAr~~~~~rg~t~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 182 (447)
T PRK06917 103 ANETAMKIAIQHFQERGIQGKHKILSRWMSYHGITMGALSMSGHPLRRQRFVSLLEDYPTISAPYCYRCPVQKVYPTCQL 182 (447)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCccccccCCCCCCCCeEeCCCcccccccCCChHHHHH
Confidence 99999999999998889999999999999999999999999987766666777766777777776555544455566788
Q ss_pred HHHHHHHHHHHhCC-CcEEEEEEcccccc-CCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCC
Q psy8199 406 CAIFDLEILLKKNH-NKIAAIIIEPLVQC-AGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIW 483 (965)
Q Consensus 406 ~d~~~le~~l~~~~-~~~aaii~ep~v~~-~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~ 483 (965)
+|++.++++++++. +++||||+|| +++ .+|+++|+++||++|+++|++||+++|+|||+|||||+|++|+++++++.
T Consensus 183 ~~~~~le~~i~~~~~~~iAAvi~EP-i~g~~gG~~~p~~~fl~~lr~lc~~~g~llI~DEv~tGfGRtG~~~a~~~~gv~ 261 (447)
T PRK06917 183 ACATELETAIERIGAEHIAAFIAEP-IIGAAGAAVVPPKGYYKVIKEICDHYDILFIADEVMTGLGRTGAMFAMEHWGVE 261 (447)
T ss_pred HHHHHHHHHHHhcCCCceEEEEEec-cccCcCceecCCHHHHHHHHHHHHHcCCEEEEechhhCcCcccchhhHHhcCCC
Confidence 89999999998653 5799999999 887 46789999999999999999999999999999999999999999999999
Q ss_pred cceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Q psy8199 484 PDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITK 563 (965)
Q Consensus 484 pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~ 563 (965)
||++||||+|+|||+|+|++++++++++.+... ...+.|++||++||++|++++++|++++++++.+++++++++|++
T Consensus 262 PDi~~~gK~l~~G~~Pi~a~~~~~~i~~~~~~~--~~~~~~~~T~~gnpl~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~ 339 (447)
T PRK06917 262 PDIMTLGKGLGAGYTPIAATVVSDRVMEPILRG--SRSIMSGHTLSANPLSAATALAVLEYMEKHNLPEKAAEKGEYLIK 339 (447)
T ss_pred CCEEEeeehhccCCcceEEEEEcHHHHHHHhcc--CcccccccCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Confidence 999999999999977999999999999988642 234678999999999999999999999888999999999999999
Q ss_pred HHHcc-cCCCceeeeeceeEEEEEEEeecCccc------hhhHHHHHHHHHHHcCcEEeec--------CCEEEEeCCcc
Q psy8199 564 ALTSL-ITHPKIINFRQKGMIWAFDVIIEDPEQ------IETFSKKFFVAALKNELLLRPI--------GNTVYLMPPYI 628 (965)
Q Consensus 564 ~L~~l-~~~~~i~~v~g~G~~~~i~~~~~~~~~------~~~~~~~~~~~l~~~Gi~~~~~--------~~~lR~~p~~~ 628 (965)
.|+++ .+++.+.+|+|.|+|+++++. .+... .......+.+.|+++||++.+. ++.+||+||++
T Consensus 340 ~L~~l~~~~~~i~~vrG~Gl~~~ie~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~~~~g~~~~~i~l~Ppl~ 418 (447)
T PRK06917 340 GLQKVQQQSTIIGDVRGKGLLIGVEFV-ADKKTKQPFSKSQAVASELISVAAKNGLLLYPAVAGQDGKEGDAVIIAPPMT 418 (447)
T ss_pred HHHHHHhcCCCEEEEeecceEEEEEEe-ccCCcCCCCcchhHHHHHHHHHHHhCCcEEEecccccCCCCCCEEEEECCCc
Confidence 99998 568888999999999999996 22111 1234567888999999999874 47999999999
Q ss_pred cCHHHHHHHHHhhhccccc
Q psy8199 629 LNKNEIQHMTSAIFQTFNE 647 (965)
Q Consensus 629 ~t~~~i~~~~~~l~~~~~~ 647 (965)
+|+++++++++++.+++.+
T Consensus 419 it~~eid~~~~~l~~~l~~ 437 (447)
T PRK06917 419 ITYSELDELLSIFAKSVEE 437 (447)
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 9999999999999877644
|
|
| >PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-66 Score=583.15 Aligned_cols=405 Identities=36% Similarity=0.648 Sum_probs=351.6
Q ss_pred cccccccCcccccccccCCCce-----eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHH
Q psy8199 224 LGLIHPKNNLKLKWRINLPDDI-----SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKP 298 (965)
Q Consensus 224 l~f~~p~~~~~~~~~~~~p~~~-----~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~ 298 (965)
-.+|+|++...... .|+++ +||||.|||+|||+.+|+|+++|||+||+|++|+++|++++.+.....+.++.
T Consensus 11 ~~~~~~~~~~~~~~---~~~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~~~~~~~~~~ 87 (428)
T PRK07986 11 RHIWHPYTSMTSPL---PVYPVVSAEGCELILADGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHPP 87 (428)
T ss_pred cccccCCcccccCC---CCeeEEeeeeeEEEeCCCCEEEEcchhHHhhcCCCCCHHHHHHHHHHHhhcCCccccccCCHH
Confidence 34677765543221 22334 99999999999999999999999999999999999999998665544568999
Q ss_pred HHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCC-cCccchhc
Q psy8199 299 VIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNI-QSFKEIYT 377 (965)
Q Consensus 299 ~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~-~~~~~~~~ 377 (965)
..+|+++|++.+|.+.++|+|++|||||+|.|+|+||.|++.+| ++|.+||+++++|||.|.+++++++. ..++..+.
T Consensus 88 ~~~la~~L~~~~p~~~~~v~f~~SGsEAve~AlklAr~~~~~~g-~~r~kii~~~~~yHG~t~~a~s~~~~~~~~~~~~~ 166 (428)
T PRK07986 88 AIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKG-EPRQRFLTLRHGYHGDTFGAMSVCDPDNSMHSLYK 166 (428)
T ss_pred HHHHHHHHHhhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHhcC-CCCcEEEEECCCcCCCcHhhhcccCCchhhhhccC
Confidence 99999999999986788999999999999999999999987766 57899999999999999999999874 34556677
Q ss_pred ccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCC
Q psy8199 378 SLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNI 457 (965)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~ 457 (965)
+..+++.++|.|.... ..++.++|++++++.+++.++++++||+||++++.+|+++|+++||++|+++|++||+
T Consensus 167 ~~~~~~~~~~~p~~~~------~~~~~~~d~~~l~~~l~~~~~~iaavi~Epi~~g~gg~~~~~~~~L~~l~~lc~~~g~ 240 (428)
T PRK07986 167 GYLPENLFAPAPQSRF------DGEWDERDIAPFARLMAAHRHEIAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDREGI 240 (428)
T ss_pred CCCCCCEEECCCCccc------chhhHHHHHHHHHHHHHhCCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCC
Confidence 7777777888775322 1246678999999999866778999999993399999999999999999999999999
Q ss_pred eEEEeccccCCCcccccccccccCCCcceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHH
Q psy8199 458 HLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCA 537 (965)
Q Consensus 458 llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aa 537 (965)
++|+|||+|||||+|++|+++++|+.||++||||+|+||++|+|++++++++++.+... ....+.|++||++||++|++
T Consensus 241 lLI~DEv~tG~GrtG~~fa~~~~gv~PDi~t~gK~l~gG~~p~~av~~~~~i~~~~~~~-~~~~~~~~~T~~g~p~~~aa 319 (428)
T PRK07986 241 LLIADEIATGFGRTGKLFACEHAGIAPDILCLGKALTGGTMTLSATLTTREVAETISNG-EAGCFMHGPTFMGNPLACAV 319 (428)
T ss_pred EEEEeccccCCccCCCeeeecccCCCCCEEEechhhhCCcccCcchhchHHHHHHhhcC-CCCccccCCCCCcCHHHHHH
Confidence 99999999999999999999999999999999999999988999999999999988652 12346689999999999999
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHHcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec
Q psy8199 538 ALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI 617 (965)
Q Consensus 538 a~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~ 617 (965)
++++|++++++++.+++++++++|++.|+++.+++.+.+|||.|+|+++++. +. ..+..+.+.|+++|+++.+.
T Consensus 320 a~a~L~~i~~~~~~~~~~~~g~~l~~~l~~l~~~~~i~~vRg~Gl~~~ve~~--~~----~~~~~~~~~l~~~Gl~~~~~ 393 (428)
T PRK07986 320 ANASLSLLESGDWQQQVAAIEAQLREELAPLRDAPMVADVRVLGAIGVVETT--RP----VNMAALQRFFVEQGVWIRPF 393 (428)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhcCCCEEeEeccceEEEEEeC--Cc----ccHHHHHHHHHHCCcEEEec
Confidence 9999999998899999999999999999998778889999999999999986 21 11346788999999999998
Q ss_pred CCEEEEeCCcccCHHHHHHHHHhhhccc
Q psy8199 618 GNTVYLMPPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 618 ~~~lR~~p~~~~t~~~i~~~~~~l~~~~ 645 (965)
++++||.||+++++++++++++++.+++
T Consensus 394 g~~i~~~Ppl~it~~ei~~~~~~l~~~l 421 (428)
T PRK07986 394 GKLIYLMPPYIILPEQLQRLTAAVNRAV 421 (428)
T ss_pred CCEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 8999999999999999999999988765
|
|
| >PRK06062 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-66 Score=587.60 Aligned_cols=409 Identities=26% Similarity=0.373 Sum_probs=347.6
Q ss_pred cccccccCcccccccccCCCce-----eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHH
Q psy8199 224 LGLIHPKNNLKLKWRINLPDDI-----SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKP 298 (965)
Q Consensus 224 l~f~~p~~~~~~~~~~~~p~~~-----~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~ 298 (965)
-.++|++...... .|+.+ +||||.|||+|||+.+|+|+.+|||+||+|++|+++|++++.+.+. .+.+++
T Consensus 22 ~~~~~~~~~~~~~----~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~-~~~~~~ 96 (451)
T PRK06062 22 AHVFHSWSAQGKI----NPMVIAGAEGSYVWDYEGRRYLDFSSQLVNTNIGHQHPKVVAAIQEQAARLCTVAP-AHANDA 96 (451)
T ss_pred hhccccccccccC----CCceEEeceeeEEEECCCCEEEEcccCHHhhcCCCCCHHHHHHHHHHHHhcCCcCC-ccCCHH
Confidence 3456665433211 45545 9999999999999999999999999999999999999999876543 678999
Q ss_pred HHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcc
Q psy8199 299 VIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTS 378 (965)
Q Consensus 299 ~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~ 378 (965)
..+|+++|+++.|.+.++|+|++|||||++.|+|+||.| ++|.+||+++++|||++.+++++++.+.+... .+
T Consensus 97 ~~~lae~L~~~~p~~~~~v~f~~SGsEAve~AlklAr~~------tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~-~~ 169 (451)
T PRK06062 97 RSEAARLIAERAPGDLSKVFFTNGGADANEHAVRMARLH------TGRPKVLSAYRSYHGGTGSAINLTGDPRRWPN-DT 169 (451)
T ss_pred HHHHHHHHHHhCCCCCCEEEEcCChHHHHHHHHHHHHHh------hCCceEEEEeCCCCCCCHHHHhhcCCcccccC-CC
Confidence 999999999999866899999999999999999999998 58999999999999999999999986543322 45
Q ss_pred cCCCeeEecCCCCCCCCCC-CChhHHHHHHHHHHHHHHHhC-CCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcC
Q psy8199 379 LLNKTYIITTPDSRNINKG-NSANEIARCAIFDLEILLKKN-HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYN 456 (965)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~le~~l~~~-~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g 456 (965)
..+++..++.|..+..++. .+..++...++++|+++++.. ++++++||+|| +++++|.++||++||++|+++|++||
T Consensus 170 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~iAaviiEP-v~g~gG~~~p~~~yl~~lr~lc~~~g 248 (451)
T PRK06062 170 GRAGVVHFFGPFLYRSEFHATTEEEECERALAHLERVIELEGPSTIAAILLES-VPGTAGILVPPPGYLAGVRELCDRHG 248 (451)
T ss_pred CCCCCEEeCCCCccccccCCCChHHHHHHHHHHHHHHHHhcCCCceEEEEEcc-ccCCCCcccCCHHHHHHHHHHHHHcC
Confidence 5566777777665543321 122344456789999999654 46899999999 99999999999999999999999999
Q ss_pred CeEEEeccccCCCcccccccccccCCCcceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHH
Q psy8199 457 IHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACC 536 (965)
Q Consensus 457 ~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~a 536 (965)
++||+|||+|||||+|.+|+++++|+.||++||||+|+|||+|+|++++++++++.+.. ..+.|++||++||++|+
T Consensus 249 ~lLI~DEV~tGfGRtG~~~a~~~~gv~PDi~t~gK~lggG~~Pigav~~~~~i~~~~~~----~~~~~~~T~~gnpl~~A 324 (451)
T PRK06062 249 IVLIADEVMAGFGRTGKWFAIEHFGVVPDLITFAKGVNSGYVPLGGVAISEAIAATFAD----RPYPGGLTYSGHPLACA 324 (451)
T ss_pred CEEEeeccccCCCcCcHHHHHHhcCCCCCeeeechhhhcCCcCcEEEEEcHHHHHHhcc----CCCCCCCCCCCCHHHHH
Confidence 99999999999999999999999999999999999999998899999999999998853 23568899999999999
Q ss_pred HHHHHHHHHhcccHHHHHHHHH-HHHHHHHHcc-cCCCceeeeeceeEEEEEEEeecCccch---------hhHHHHHHH
Q psy8199 537 AALATLEIFNKDNILQRISQDM-KKITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDPEQI---------ETFSKKFFV 605 (965)
Q Consensus 537 aa~a~L~~~~~~~~~~~~~~~~-~~l~~~L~~l-~~~~~i~~v~g~G~~~~i~~~~~~~~~~---------~~~~~~~~~ 605 (965)
+|+++|++++++++.+++++++ ++|+++|+++ .+++.+.+++|.|+|+++++. .+.... ......+.+
T Consensus 325 aa~a~L~~l~~~~l~~~~~~~G~~~l~~~L~~l~~~~~~v~~vrG~Gl~~gve~~-~~~~~~~~~~~~~~~~~~~~~~~~ 403 (451)
T PRK06062 325 AAVATINAMEEEGIVENAARIGAEVLGPGLRELAERHPSVGEVRGLGVFWALELV-ADRETREPLAPYGASSAAMAAVKA 403 (451)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcEEeEeccccEEEEEEc-ccccccCCCcccchhhHHHHHHHH
Confidence 9999999999889999999999 6999999998 567888899999999999996 221100 113557888
Q ss_pred HHHHcCcEEeecCCEEEEeCCcccCHHHHHHHHHhhhcccccHHH
Q psy8199 606 AALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNELDE 650 (965)
Q Consensus 606 ~l~~~Gi~~~~~~~~lR~~p~~~~t~~~i~~~~~~l~~~~~~~~e 650 (965)
.|+++||++.+.++.+||+||+++++++++++++++.+++..+++
T Consensus 404 ~l~~~Gvl~~~~~~~lrl~ppl~~t~~eid~~~~~l~~~l~~~~~ 448 (451)
T PRK06062 404 ACKERGLLPFVNGNRIHVVPPCTVTEDEVREGLAILDAALAVADA 448 (451)
T ss_pred HHHHCCcEEeecCCEEEEECCccCCHHHHHHHHHHHHHHHHHhhh
Confidence 999999999887789999999999999999999999887765544
|
|
| >PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-66 Score=582.00 Aligned_cols=387 Identities=34% Similarity=0.634 Sum_probs=345.9
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhH
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGAS 325 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGse 325 (965)
+||||.|||+|||+.+|+|+.++||+||+|++|+++|++++.+.....+.++...+|+++|++.+|.+.++|+|++||||
T Consensus 36 ~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGse 115 (429)
T PRK06173 36 VMITLKDGRRLIDGMSSWWAALHGYNHPRLNAAATNQLAKMSHIMFGGFTHEPAVELAQKLLEILPPSLNKIFFADSGSV 115 (429)
T ss_pred eEEEcCCCCEEEEccchHHhccCCCCCHHHHHHHHHHHHhcCCccccccCCHHHHHHHHHHHhhCCCCcCEEEEeCCchH
Confidence 99999999999999999999999999999999999999998766555678999999999999999877899999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCC-cCccchhcccCCCeeEecCCCCCCCCCCCChhHHH
Q psy8199 326 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNI-QSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIA 404 (965)
Q Consensus 326 A~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (965)
|||.|+|+||.|++.+|+++|.+||+++++|||.|.+++++++. ..++..+.+..+...++|.|.... ...+.
T Consensus 116 Ave~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~------~~~~~ 189 (429)
T PRK06173 116 AVEVAMKMALQYQQAKGEVQRTKFATIRSGYHGDTWHAMSVCDPVTGMHGLFNHSLPVQYFLPQPSIKF------GEEWN 189 (429)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCCcchhhhccCCCchhhhhcccccCCCCeEeCCCCccc------chhHH
Confidence 99999999999988888889999999999999999999999874 446666777777777888775321 13455
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEEcccc-ccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCC
Q psy8199 405 RCAIFDLEILLKKNHNKIAAIIIEPLV-QCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIW 483 (965)
Q Consensus 405 ~~d~~~le~~l~~~~~~~aaii~ep~v-~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~ 483 (965)
..++++|++.+..+++++||||+|| + |+++|.++||++|+++|+++|++||+++|+|||||||||+|++|+++++|+.
T Consensus 190 ~~~l~~l~~~i~~~~~~iAAvi~EP-i~qg~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~ 268 (429)
T PRK06173 190 DEAIEPLQDLLEQKGDEIAALILEP-VVQGAGGMYFYSPTYLVKARELCDQYGVLLIFDEIATGFGRTGKLFALEHAGVV 268 (429)
T ss_pred HHHHHHHHHHHHhCCCcEEEEEEcc-hhhccCCcccCCHHHHHHHHHHHHHcCCeEEecchhcCCCcCCcchHHHhcCCC
Confidence 6689999999976677899999999 6 9999999999999999999999999999999999999999999999999999
Q ss_pred cceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Q psy8199 484 PDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITK 563 (965)
Q Consensus 484 pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~ 563 (965)
||++||||+++||++|+|++++++++++.+.. +....+.|++||++||++|++++++|++++++++.+++++++++|++
T Consensus 269 PDiv~~gK~l~gG~~p~~a~~~~~~i~~~~~~-~~~~~~~~~~T~~g~p~~~aaa~a~l~~i~~~~~~~~~~~~g~~l~~ 347 (429)
T PRK06173 269 PDIMCIGKALTGGYLTLSATITTEAIAQTICS-GEAKCFMHGPTFMANPLACAIAAESIRLLLESPWQQNIQRIEAQLKQ 347 (429)
T ss_pred CCEEEeehhhhCCccccceEEecHHHHHHHhc-CCCCccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 99999999999998899999999999998864 22335779999999999999999999999988899999999999999
Q ss_pred HHHcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecCCEEEEeCCcccCHHHHHHHHHhhhc
Q psy8199 564 ALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQ 643 (965)
Q Consensus 564 ~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~lR~~p~~~~t~~~i~~~~~~l~~ 643 (965)
+|+++.+++.+.+||+.|+|+++++. +. ..+..+.+.|+++||++.+.++++||.||+++++++++++++++.+
T Consensus 348 ~L~~~~~~~~v~~vRg~Gl~~~iel~--~~----~~~~~i~~~l~e~Gi~v~~~g~~l~~~Ppl~it~~ei~~~~~~l~~ 421 (429)
T PRK06173 348 ELAPAAEFDSVAEVRVLGAIGVVEMK--EP----VNMATLQPRFVEHGIWVRPFGKLVYIMPPFIISPDELSQLTSGLLR 421 (429)
T ss_pred HHHHhhcCCCeeeeeccceEEEEEeC--Cc----ccHHHHHHHHHHCCeEEEecCCEEEEeCCccCCHHHHHHHHHHHHH
Confidence 99887667888899999999999996 21 1134678899999999999889999999999999999999999987
Q ss_pred ccc
Q psy8199 644 TFN 646 (965)
Q Consensus 644 ~~~ 646 (965)
++.
T Consensus 422 ~l~ 424 (429)
T PRK06173 422 VLK 424 (429)
T ss_pred HHH
Confidence 664
|
|
| >PRK09221 beta alanine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-65 Score=582.64 Aligned_cols=417 Identities=27% Similarity=0.447 Sum_probs=356.0
Q ss_pred cccccCcccccccccCCCce-----eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHH
Q psy8199 226 LIHPKNNLKLKWRINLPDDI-----SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVI 300 (965)
Q Consensus 226 f~~p~~~~~~~~~~~~p~~~-----~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~ 300 (965)
+|||++...... +.|..+ +||||.|||+|||+.+|+|+.+|||+||+|++|+++|++++.+.+...+.++...
T Consensus 18 ~~~~~~~~~~~~--~~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~l~~~~~~~~~~~~~~ 95 (445)
T PRK09221 18 HWMPFTANRQFK--AAPRLLVSAEGMYYTDADGRKILDGTAGLWCCNAGHGRPEIVEAVARQAATLDYAPAFQMGHPLAF 95 (445)
T ss_pred cccCcccccccC--CCCceEEeccccEEEeCCCCEEEEccccHhhccCCCCCHHHHHHHHHHHHhccCccccccCCHHHH
Confidence 566665443221 134544 9999999999999999999999999999999999999999876655567899999
Q ss_pred HHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccC
Q psy8199 301 KLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLL 380 (965)
Q Consensus 301 ~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~ 380 (965)
+|+++|++.+|.+.++|+|++|||||+|.|+|+||.|++.+|.++|.+||+++++|||+|.+++++++.+.++..|.+..
T Consensus 96 ~la~~L~~~~p~~~~~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~ 175 (445)
T PRK09221 96 ELAERLAELAPGGLDHVFFTNSGSESVDTALKIALAYHRARGQGTRTRLIGRERGYHGVGFGGISVGGIVNNRKMFGGLL 175 (445)
T ss_pred HHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCccchhhhccCCChhhhhccCCCC
Confidence 99999999998678899999999999999999999998877877889999999999999999999999877777777777
Q ss_pred CCeeEecCCC-CCCCCCCCChhHHHHHHHHHHHHHHHhC-CCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCe
Q psy8199 381 NKTYIITTPD-SRNINKGNSANEIARCAIFDLEILLKKN-HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIH 458 (965)
Q Consensus 381 ~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~le~~l~~~-~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~l 458 (965)
+++.++|.|. ......+.....+...++++++++++.. .+++++||+|| +++++|.+.|+++||++|+++|++||++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAavi~Ep-v~g~~G~~~~~~~yl~~l~~lc~~~g~l 254 (445)
T PRK09221 176 PGVDHLPHTLDLPENAFSKGQPEHGAELADDLERLVALHDASTIAAVIVEP-MAGSAGVLVPPKGYLQRLREICDKHGIL 254 (445)
T ss_pred CCCeEeCCCccccccccCCChHHHHHHHHHHHHHHHHhcCCCcEEEEEEec-ccCCCCcccCCHHHHHHHHHHHHHcCCE
Confidence 7777887764 3332223333444555678888888765 37899999999 9999999999999999999999999999
Q ss_pred EEEeccccCCCcccccccccccCCCcceeeeccccCCCcccceeeeecHHHHHhhhccC-CcccccccCCCCCCHHHHHH
Q psy8199 459 LIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKN-NINIFLHSHSYSGNPLACCA 537 (965)
Q Consensus 459 lI~DEv~tg~gr~G~~~~~~~~~~~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~-~~~~~~~~~t~~~~~~~~aa 537 (965)
+|+|||+|||||+|++|+++++++.||++|+||+++||++|+|++++++++++.+..+. ....+.|++||++||++|++
T Consensus 255 lI~DEV~tG~GRtG~~~~~~~~gv~PDi~~~gK~l~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~~~~T~~~~pl~~aa 334 (445)
T PRK09221 255 LIFDEVITGFGRLGAAFAAERFGVTPDIITFAKGLTNGAIPMGAVIASDEIYDAFMQGPEYAIEFFHGYTYSAHPVACAA 334 (445)
T ss_pred EEEeehhhCCCcCchhhHHHhcCCCCCEEEeccccccCcccceeeEEcHHHHHhhccCcccccccccccCCCcCHHHHHH
Confidence 99999999999999999999999999999999999999889999999999999886421 11135688999999999999
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHHcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec
Q psy8199 538 ALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI 617 (965)
Q Consensus 538 a~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~ 617 (965)
++++|++++++++.+++++++++|+++|+++.+++.+.++||.|+|.++++..... .....+..+.+.|+++||++.+.
T Consensus 335 a~a~L~~i~~~~l~~~~~~~g~~l~~~l~~l~~~~~v~~vrg~Gl~~~v~~~~~~~-~~~~~~~~~~~~~~~~Gv~~~~~ 413 (445)
T PRK09221 335 GLATLDIYREEDLFERAAELAPYFEDAVHSLKGLPHVIDIRNIGLVAGIELAPRPG-APGARGYEAFMKCFEKGLLVRYT 413 (445)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHhhccCCCEEEEecCceEEEEEEecccc-cccchHHHHHHHHHHCCeEEeec
Confidence 99999999888999999999999999999987788889999999999999962111 11122446778899999999988
Q ss_pred CCEEEEeCCcccCHHHHHHHHHhhhcccc
Q psy8199 618 GNTVYLMPPYILNKNEIQHMTSAIFQTFN 646 (965)
Q Consensus 618 ~~~lR~~p~~~~t~~~i~~~~~~l~~~~~ 646 (965)
++.+||+||+++++++++++++++.+++.
T Consensus 414 ~~~lr~~Ppl~~t~~eid~~~~~l~~~l~ 442 (445)
T PRK09221 414 GDTIALSPPLIIEKAQIDELVDALGDALR 442 (445)
T ss_pred CCEEEEECCccCCHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999887654
|
|
| >PRK12403 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-65 Score=585.32 Aligned_cols=419 Identities=27% Similarity=0.427 Sum_probs=353.2
Q ss_pred cccccccCcccccccccCCCce-----eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccC-CCCcH
Q psy8199 224 LGLIHPKNNLKLKWRINLPDDI-----SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLS-NLTHK 297 (965)
Q Consensus 224 l~f~~p~~~~~~~~~~~~p~~~-----~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~-~~~~~ 297 (965)
-..|||++...... -..|+++ +||||.|||+||||.+|+|+.+|||+||+|++|+++|++++.+.+.. .+.++
T Consensus 20 ~~~~~~~~~~~~~~-~~~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~hp~v~~A~~~q~~~~~~~~~~~~~~~~ 98 (460)
T PRK12403 20 AHHIHAFLDQKALN-AEGPRVMVRGEGLHLWDNDGKRYLDGMSGLWCTNLGYGRKDLAAAAARQMEQLPYYNMFFHTTHP 98 (460)
T ss_pred cccccccccccccc-cCCCceEEeceeeEEEeCCCCEEEECchhHHhhcCCCCCHHHHHHHHHHHHhCCCeecccccCCH
Confidence 34677776542210 0135555 99999999999999999999999999999999999999997655432 46789
Q ss_pred HHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhc
Q psy8199 298 PVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYT 377 (965)
Q Consensus 298 ~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~ 377 (965)
...+|+++|++.+|.+.++++|++||||||++|+|+||.|+..+|++++.+|+.+.++|||++.+++++++...++. +.
T Consensus 99 ~~~~lae~L~~~~p~~~~~v~f~~SGseA~e~AiklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~~~s~s~~~~~~~-~~ 177 (460)
T PRK12403 99 AVIELSELLFSLLPGHYSHAIYTNSGSEANEVLIRTVRRYWQVLGKPQKKIMIGRWNGYHGSTLAATALGGMKFMHE-MG 177 (460)
T ss_pred HHHHHHHHHHHhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHhhCCCCCcEEEEECCCcCcccHhhhhcCCCccccc-cC
Confidence 99999999999998667899999999999999999999998777877788899999999999999999998765554 35
Q ss_pred ccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHh-CCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcC
Q psy8199 378 SLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKK-NHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYN 456 (965)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~-~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g 456 (965)
+..+++.++|.|..++.+++.....+...++++|++.+.+ ..+++++||+|| +++++|.+.|+++||++|+++|++||
T Consensus 178 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~iaavI~Ep-v~g~gG~~~~~~~yl~~lr~lc~~~g 256 (460)
T PRK12403 178 GLIPDVAHIDEPYWYANGGELTPAEFGRRAALQLEEKILELGAENVAGFVAEP-FQGAGGMIFPPESYWPEIQRICRQYD 256 (460)
T ss_pred CCCCCCEEeCCCcccccccCCChHHHHHHHHHHHHHHHHHhCCCceEEEEEcc-ccCCCCCccCCHHHHHHHHHHHHHcC
Confidence 5667788888876655443334445555567788776643 346899999999 99999999999999999999999999
Q ss_pred CeEEEeccccCCCcccccccccccCCCcceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHH
Q psy8199 457 IHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACC 536 (965)
Q Consensus 457 ~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~a 536 (965)
++||+|||+|||||+|++|+++++|+.||++|+||+|+|||+|+|++++++++++.+... ...+.|++||++||++|+
T Consensus 257 ~lLI~DEV~tGfGRtG~~~a~e~~gv~PDiv~~gK~lggG~~Piga~v~~~~i~~~~~~~--~~~~~~~~T~~gnPl~~A 334 (460)
T PRK12403 257 VLLCADEVIGGFGRTGEWFAHEHFGFEPDTLSIAKGLTSGYVPMGGLVLSKRIAEALVEQ--GGVFAHGLTYSGHPVAAA 334 (460)
T ss_pred CEEEEeccccCCCcCchhhhhhhcCCCCCeEEEcccccccccceEEEEECHHHHHHHhcC--CCccccCCCCCCCHHHHH
Confidence 999999999999999999999999999999999999999988999999999999988642 234668999999999999
Q ss_pred HHHHHHHHHhcccHHHHHH-HHHHHHHHHHHcc-cCCCceeeeeceeEEEEEEEeecCccch------hhHHHHHHHHHH
Q psy8199 537 AALATLEIFNKDNILQRIS-QDMKKITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDPEQI------ETFSKKFFVAAL 608 (965)
Q Consensus 537 aa~a~L~~~~~~~~~~~~~-~~~~~l~~~L~~l-~~~~~i~~v~g~G~~~~i~~~~~~~~~~------~~~~~~~~~~l~ 608 (965)
+++++|++++++++.++++ +++++|++.|+++ .+++.+.+|||.|+|+++++. .+..+. ......+...++
T Consensus 335 aala~L~~i~~~~l~~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~Gl~~gie~~-~~~~~~~~~~~~~~~~~~~~~~~~ 413 (460)
T PRK12403 335 VAIANLKALRDEGVVTRVKDDTGPYLQRCLREVFGDHPLVGEVQGAGLVAALQFA-EDKATRKRFANENDLAWRCRTIGF 413 (460)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhcCCCEEeEeecceEEEEEEc-cCccccccccchhHHHHHHHHHHH
Confidence 9999999999888999996 9999999999887 678889999999999999996 221111 122334667789
Q ss_pred HcCcEEeecCCEEEEeCCcccCHHHHHHHHHhhhcccccH
Q psy8199 609 KNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNEL 648 (965)
Q Consensus 609 ~~Gi~~~~~~~~lR~~p~~~~t~~~i~~~~~~l~~~~~~~ 648 (965)
++|+++.+.++.+||+||+++|+++++++++.+.+++.++
T Consensus 414 ~~Gll~~~~~~~~~l~Ppl~it~~eid~~~~~l~~al~~~ 453 (460)
T PRK12403 414 EEGVIIRSTLGRMIMAPALVAGRAEIDELVDKTRIAVDRT 453 (460)
T ss_pred hCCEEEEecCCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999877889999999999999999999998877543
|
|
| >PRK13360 omega amino acid--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-65 Score=581.23 Aligned_cols=398 Identities=27% Similarity=0.467 Sum_probs=346.2
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhH
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGAS 325 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGse 325 (965)
+||||.|||+||||.+|+|+.+|||+||+|++|+++|++++.+.+...+.++...+++++|++.+|.+.++|+|++||||
T Consensus 38 ~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~l~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGse 117 (442)
T PRK13360 38 MYYTTHDGRRVLDGTAGLWCVNAGHGRPEIVEAVRAQAGELDYAPAFQMGHPKAFELANRIAEIAPGGLNHVFFTNSGSE 117 (442)
T ss_pred eEEEeCCCCEEEECchhHHHhccCCCCHHHHHHHHHHHHhCCCcccCCcCCHHHHHHHHHHHHhCCCCCCEEEEeCCcHH
Confidence 99999999999999999999999999999999999999987665555678999999999999999867889999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCC-CCCCCCCChhHHH
Q psy8199 326 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDS-RNINKGNSANEIA 404 (965)
Q Consensus 326 A~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 404 (965)
|+|.|+|+||.|++.+|.++|.+||++.++|||+|.+++++++...++..+.++.+++.++|.+.. .+.+.+.....+.
T Consensus 118 A~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~tg~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 197 (442)
T PRK13360 118 SVDTALKIALAYHRARGEGSRTRLIGRERGYHGVGFGGISVGGIVPNRKAFGALLPGVDHLPHTLDLARNAFSKGQPEHG 197 (442)
T ss_pred HHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHhhhhccCChhhhhccCCCCCCCEEeCCCchhhccccCCChHHHH
Confidence 999999999999777776678999999999999999999999987777777777777778887642 2222223333455
Q ss_pred HHHHHHHHHHHHhC-CCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCC
Q psy8199 405 RCAIFDLEILLKKN-HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIW 483 (965)
Q Consensus 405 ~~d~~~le~~l~~~-~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~ 483 (965)
..++++|+++++.. ++++++||+|| +++++|.+.|+++||++|+++|++||+++|+|||||||||+|++|+++++|+.
T Consensus 198 ~~~~~~le~~l~~~~~~~~aavivEp-i~g~~G~~~~~~~fl~~lr~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~ 276 (442)
T PRK13360 198 AELADELERLVTLHDASTIAAVIVEP-VAGSTGVLIPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAPFAAQYFGVT 276 (442)
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEEcc-ccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchhhhhcCCC
Confidence 55788899888754 47899999999 99999999999999999999999999999999999999999999999999999
Q ss_pred cceeeeccccCCCcccceeeeecHHHHHhhhccCC-cccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Q psy8199 484 PDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNN-INIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKIT 562 (965)
Q Consensus 484 pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~-~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~ 562 (965)
||++||||+|+||++|+|++++++++++.+..+.. ...+.|++||++||++|++++++|++++++++.+++++++++|+
T Consensus 277 PDivt~gK~l~gG~~P~gav~~~~~i~~~~~~~~~~~~~~~~~~T~~g~pl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~ 356 (442)
T PRK13360 277 PDLLTCAKGLTNGAIPMGAVFVSSEIHDAFMQGPEAGIEFFHGYTYSGHPLACAAALATLDLYEREGLLTRAARLAPYWE 356 (442)
T ss_pred CceeeeeeccccCccceEEEEEcHHHHHHhhcCCccccccccCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99999999999998899999999999998864211 11256889999999999999999999998899999999999999
Q ss_pred HHHHcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecCCEEEEeCCcccCHHHHHHHHHhhh
Q psy8199 563 KALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIF 642 (965)
Q Consensus 563 ~~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~lR~~p~~~~t~~~i~~~~~~l~ 642 (965)
+.|+++.+++.+.+++|.|+++++++...... ....+..+...|+++||++.+.++.+||+||+++|+++++++++++.
T Consensus 357 ~~l~~l~~~~~v~~vrG~Gl~~~~~l~~~~~~-~~~~~~~~~~~l~~~Gvl~~~~~~~lr~~Ppl~~t~~eid~~~~~l~ 435 (442)
T PRK13360 357 DALHSLRDAPHVIDIRNLGLVGAVELAPRDGK-PGKRAYEVFLKCFEKGLMIRYTGDILALSPPLIIEEAQIDELFDILA 435 (442)
T ss_pred HHHHHhhcCCCeeeeeccceEEEEEEecCCCC-cchhHHHHHHHHHHCCcEEEecCCEEEEeCCCccCHHHHHHHHHHHH
Confidence 99998866788889999999999998621111 12234567788999999999888899999999999999999999987
Q ss_pred ccc
Q psy8199 643 QTF 645 (965)
Q Consensus 643 ~~~ 645 (965)
+++
T Consensus 436 ~~l 438 (442)
T PRK13360 436 QAL 438 (442)
T ss_pred HHH
Confidence 665
|
|
| >PRK06541 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-65 Score=582.18 Aligned_cols=418 Identities=28% Similarity=0.485 Sum_probs=361.2
Q ss_pred ccccccccCccccccccc-CCCce-----eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCc
Q psy8199 223 KLGLIHPKNNLKLKWRIN-LPDDI-----SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTH 296 (965)
Q Consensus 223 ~l~f~~p~~~~~~~~~~~-~p~~~-----~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~ 296 (965)
+-.+|||++...... . .|.++ +||||.|||+|||+.+|+|+++|||+||+|++|+++|++++.+.+...+.+
T Consensus 17 ~~~~~~~~~~~~~~~--~~~~~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~q~~~~~~~~~~~~~~ 94 (460)
T PRK06541 17 KRHLWMHFTRHGAYI--DAPVPVIVRGEGCYIWDDRGKRYLDGLAGLFVVQVGHGRAELAEAAAKQAGTLAFFPLWSYAH 94 (460)
T ss_pred hcccccCccCccccc--cCCCceEEeCcccEEEeCCCCEEEECCccHHhccCCCCCHHHHHHHHHHHhhCcCccccccCC
Confidence 456789987764331 1 24444 999999999999999999999999999999999999999987665556889
Q ss_pred HHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchh
Q psy8199 297 KPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIY 376 (965)
Q Consensus 297 ~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~ 376 (965)
+...+++++|++..|.+.++|+|++|||||+|.|+|+||.|++.+|.++|.+||+++++|||+|.+++++++.+.++..+
T Consensus 95 ~~~~~la~~l~~~~p~~~~~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~ 174 (460)
T PRK06541 95 PPAIELAERLAALAPGDLNRVFFTTGGSEAVESAWKLAKQYFKLTGKPGKHKVISRAIAYHGTTQGALAITGLPAFKAPF 174 (460)
T ss_pred HHHHHHHHHHHHhCCCCcCEEEEcCCcHHHHHHHHHHHHHHHHhcCCCCccEEEEEcCcccCcchhhhcCcCChhhcccc
Confidence 99999999999998866889999999999999999999999887788889999999999999999999999877777777
Q ss_pred cccCCCeeEecCCCCCCCC-CCCChhHHHHHHHHHHHHHHHhC-CCcEEEEEEccccccCCCcccCChHHHHHHHHHHHh
Q psy8199 377 TSLLNKTYIITTPDSRNIN-KGNSANEIARCAIFDLEILLKKN-HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNN 454 (965)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~~le~~l~~~-~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~ 454 (965)
.+..+++.++|.|+.++.+ .+.+...+...+++.+++++++. ++++++||+|| +++++|.+++|++||++|+++|++
T Consensus 175 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Aavi~EP-v~g~~G~~~~~~~yl~~l~~lc~~ 253 (460)
T PRK06541 175 EPLVPGGFRVPNTNFYRAPELGDDPEAFGRWAADRIEEAIEFEGPDTVAAVFLEP-VQNAGGCFPPPPGYFERVREICDR 253 (460)
T ss_pred CCCCCCcEEeCCCccccccccCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC-ccCCCCCccCCHHHHHHHHHHHHH
Confidence 8888888888888766544 33334456666788999998753 56899999999 999999999999999999999999
Q ss_pred cCCeEEEeccccCCCcccccccccccCCCcceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHH
Q psy8199 455 YNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLA 534 (965)
Q Consensus 455 ~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~ 534 (965)
||+++|+|||||||||+|++|+++++|+.||++||||+++||++|+|++++++++++.+... ...+.|++||++||++
T Consensus 254 ~g~llI~DEV~tGfGR~G~~~a~~~~gv~PDivt~gK~l~~G~~pigav~~~~~i~~~~~~~--~~~~~~~~T~~gnp~~ 331 (460)
T PRK06541 254 YDVLLVSDEVICAFGRLGEMFGCERFGYVPDIITCAKGITSGYSPLGAMIASDRLFEPFLDG--PTMFLHGYTFGGHPVS 331 (460)
T ss_pred cCCEEEEechhhCCCcCchhhhhhhcCCCCCEEEecccccCCccceeEEEEcHHHHHHhhcC--CCccccCCCCCCCHHH
Confidence 99999999999999999999999999999999999999999967999999999999988642 1456788999999999
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcccCCCceeeeeceeEEEEEEEeecCccch-----h---h-HHHHHHH
Q psy8199 535 CCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQI-----E---T-FSKKFFV 605 (965)
Q Consensus 535 ~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~-----~---~-~~~~~~~ 605 (965)
|++++++|++++++++.+++++++++|+++|+++.++|.+..++|.|+|+++++. .+..+. . . ....+..
T Consensus 332 ~aaala~l~~l~~~~~~~~~~~~g~~l~~~L~~l~~~~~v~~vrg~Gl~~~ie~~-~~~~~~~~~~~~~~~~~~~~~~~~ 410 (460)
T PRK06541 332 AAVALANLDIFEREGLLDHVRDNEPAFRATLEKLLDLPIVGDVRGDGYFYGIELV-KDKATKETFTDDESERLLRGFLSP 410 (460)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecceEEEEEEe-cCcccccCCcchhhhhhHHHHHHH
Confidence 9999999999988899999999999999999998668888899999999999996 221110 0 1 1135778
Q ss_pred HHHHcCcEEeec--C-CEEEEeCCcccCHHHHHHHHHhhhcccc
Q psy8199 606 AALKNELLLRPI--G-NTVYLMPPYILNKNEIQHMTSAIFQTFN 646 (965)
Q Consensus 606 ~l~~~Gi~~~~~--~-~~lR~~p~~~~t~~~i~~~~~~l~~~~~ 646 (965)
.|+++||++.+. + +.+||+||+++++++++++++++.+++.
T Consensus 411 ~l~~~Gi~~~~~~~g~~~lrl~Ppl~~t~~~id~~~~~l~~~l~ 454 (460)
T PRK06541 411 ALFEAGLYCRADDRGDPVVQLAPPLISGQEEFDEIEQILRSVLT 454 (460)
T ss_pred HHHhCCeEEEecCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 899999999873 3 6899999999999999999999887654
|
|
| >TIGR03372 putres_am_tran putrescine aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-65 Score=574.69 Aligned_cols=367 Identities=30% Similarity=0.526 Sum_probs=327.7
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhH
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGAS 325 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGse 325 (965)
+||||.|||+|||+.+|+|+.++||+||+|++|+++|++++.+.+ ..+.++...+++++|++.+|.+.++|+|++||||
T Consensus 67 ~~l~D~dG~~ylD~~~g~~~~~lGh~hp~v~~Av~~ql~~l~~~~-~~~~~~~~~~lAe~L~~~~p~~~~~v~f~~SGsE 145 (442)
T TIGR03372 67 NTLIDTQGNEFIDCLGGFGIFNVGHRNPNVIAAVENQLAKQPLHS-QELLDPLRALLAKTLAALTPGKLKYSFFCNSGTE 145 (442)
T ss_pred eEEEECCCCEEEECCccHHhhhcCCCCHHHHHHHHHHHHhCCCcc-cccCCHHHHHHHHHHHHhCCCCcCEEEEeCCchH
Confidence 899999999999999999999999999999999999999876543 3466899999999999999866789999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHH
Q psy8199 326 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIAR 405 (965)
Q Consensus 326 A~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (965)
||+.|+|+||.|+.. +++.+||+++++|||+|.+++++++.+.++..+.++.+++.++|+|
T Consensus 146 A~e~AlklAr~~t~~---~gr~~ii~~~~~yHG~t~~~ls~t~~~~~~~~~~p~~~~~~~~p~~---------------- 206 (442)
T TIGR03372 146 SVEAALKLAKAYQSP---RGKFTFIAASGAFHGKSLGALSATAKPAFRKPFMPLLPGFHHVAFG---------------- 206 (442)
T ss_pred HHHHHHHHHHHHHhh---cCCcEEEEECCCccCCCHHHhhccCCcccCCCCCCCCCCCEEeCCC----------------
Confidence 999999999998643 3578899999999999999999999877777788888888888875
Q ss_pred HHHHHHHHHHHh---CCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCC
Q psy8199 406 CAIFDLEILLKK---NHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEI 482 (965)
Q Consensus 406 ~d~~~le~~l~~---~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~ 482 (965)
|++++++.+++ +++++++||+|| +++++|.++||++||++++++|++||+++|+|||||||||+|++|+++++|+
T Consensus 207 -d~~~~~~~l~~~~~~~~~vAavIvEp-v~g~gG~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~~~a~e~~gv 284 (442)
T TIGR03372 207 -DIEAMLKALNECKKTGDDVAAIILEP-IQGEGGVILPPEGYLPAVRALCDEFGALLILDEVQTGMGRTGKMFACEHEGV 284 (442)
T ss_pred -CHHHHHHHHHHHhcCCCcEEEEEEeC-ccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeecccCCCccccchhhhhcCC
Confidence 44555555542 357899999999 9999999999999999999999999999999999999999999999999999
Q ss_pred CcceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Q psy8199 483 WPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKIT 562 (965)
Q Consensus 483 ~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~ 562 (965)
.||++|+||+|+||++|+|++++++++++.+.. .++.|++||+|||++|++++++|++++++++.+++++++++|+
T Consensus 285 ~PDivt~gK~lg~G~~Pigavv~~~~i~~~~~~----~~~~~~~T~~gnp~~~Aaa~a~L~~i~~~~l~~~~~~~G~~l~ 360 (442)
T TIGR03372 285 QPDILCLAKALGGGVMPIGATIATEAVFSVLFD----NPFLHTTTFGGNPLACAAALATINELLEKNLPAQAAIKGDFLL 360 (442)
T ss_pred CCCeeeehhhhcCCcccceEEEecHHHHHhhhc----cCccccCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 999999999999998899999999999988843 2467899999999999999999999998999999999999999
Q ss_pred HHHHcc-cCCC-ceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec---CCEEEEeCCcccCHHHHHHH
Q psy8199 563 KALTSL-ITHP-KIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI---GNTVYLMPPYILNKNEIQHM 637 (965)
Q Consensus 563 ~~L~~l-~~~~-~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~---~~~lR~~p~~~~t~~~i~~~ 637 (965)
++|+++ .++| .+.+|||.|+|+++++. .+ .....+.+.|+++||++.+. ++++||.||+++++++++++
T Consensus 361 ~~L~~l~~~~~~~i~~vRG~Gl~~giel~-~~-----~~~~~i~~~l~~~Gvl~~~~~~~~~~lr~~Ppl~~t~~~id~~ 434 (442)
T TIGR03372 361 DGFQQLAAEYPDLIIEARGKGLLMAIEFR-DN-----EIGYAFAKELFQQNILVAGTLNNAKSIRIEPPLTITIEQCALV 434 (442)
T ss_pred HHHHHHHHhCCCceEEEecceEEEEEEeC-Ch-----HHHHHHHHHHHHCCcEEeecCCCCCEEEEECCcccCHHHHHHH
Confidence 999998 5677 67899999999999996 22 23456889999999999753 47999999999999999999
Q ss_pred HHhhhcc
Q psy8199 638 TSAIFQT 644 (965)
Q Consensus 638 ~~~l~~~ 644 (965)
+++++++
T Consensus 435 ~~~l~~~ 441 (442)
T TIGR03372 435 IKAAKDA 441 (442)
T ss_pred HHHHHHh
Confidence 9988764
|
Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine. |
| >PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-65 Score=579.76 Aligned_cols=385 Identities=25% Similarity=0.363 Sum_probs=333.5
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCC---CeEEEc-C
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKL---GHCFYG-S 321 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~---~~v~~~-~ 321 (965)
+||||.|||+|||+.+|+|++++||+||+|++|+++|+++..+.+...+.++...+|+++|.+.+|.++ ++++|+ +
T Consensus 55 ~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~la~~L~~~~p~~~~~~~~v~f~~~ 134 (464)
T PRK06938 55 IYVEDVEGRQFIDCLAGAGTLALGHNHPVVIEAIQQVLADELPLHTLDLTTPVKDQFVQDLFASLPEAFAREAKIQFCGP 134 (464)
T ss_pred cEEEeCCCCEEEEccCCccccccCCCCHHHHHHHHHHHHhhhcccccccCCHHHHHHHHHHHHhCcccccccceEEEeCC
Confidence 999999999999999999999999999999999999997643333335789999999999999987544 377675 8
Q ss_pred ChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChh
Q psy8199 322 DGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSAN 401 (965)
Q Consensus 322 sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (965)
|||||++.|+|+||.+ ++|.+||+++++|||+|.+++++++...++..+.+..+++.++|+|..++.+.+...+
T Consensus 135 SGSEAve~AlklAr~~------tgr~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 208 (464)
T PRK06938 135 TGTDAVEAALKLVKTA------TGRSTVLSFQGGYHGMSQGALSLMGNLGPKKPLGALLPGVQFLPYPYDYRCPFGLGGE 208 (464)
T ss_pred CcHHHHHHHHHHHHHh------hCCCeEEEECCccCCccHHHHhhcCCccccccCCCCCCCcEEeCCCccccccccCchh
Confidence 9999999999999998 6899999999999999999999998776666777777778888888665554443344
Q ss_pred HHHHHHHHHHHHHHHhC---CCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccccccccc
Q psy8199 402 EIARCAIFDLEILLKKN---HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACE 478 (965)
Q Consensus 402 ~~~~~d~~~le~~l~~~---~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~ 478 (965)
.+...+++.+++++++. .+++||||+|| +++++|+++||++||++|+++|++||+++|+|||+|||||+|++|+++
T Consensus 209 ~~~~~~~~~l~~~i~~~~~~~~~iAAvI~EP-iqg~gG~~~p~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~~~a~e 287 (464)
T PRK06938 209 AGVRANLHYLENLLDDPESGVVLPAAVILEV-VQGEGGVIPAPIEWLRGLRRITEEAGIPLIVDEIQSGFGRTGKMFAFE 287 (464)
T ss_pred hHHHHHHHHHHHHHHhhccCCCceEEEEEcc-ccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcHHHHHH
Confidence 55567889999999753 24799999999 999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHH
Q psy8199 479 HAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDM 558 (965)
Q Consensus 479 ~~~~~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~ 558 (965)
++|+.||++|+||+|+|| +|+|++++++++ +.+.. ..|++||+|||++|++|+++|++++++++.+++++++
T Consensus 288 ~~gv~PDiv~~gKglggG-~PlsAv~~~~~~-~~~~~------~~~~~T~~gnpla~Aaa~a~L~~l~~~~l~~~~~~~G 359 (464)
T PRK06938 288 HAGIIPDVVVLSKAIGGS-LPLAVVVYREWL-DTWQP------GAHAGTFRGNQMAMAAGSATLRYIKEHRLAEHAAAMG 359 (464)
T ss_pred hcCCCCCEEEeeccccCC-CceEEEeehhHh-hccCC------CCCCCCCCcCHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 999999999999999999 799999999885 65532 3589999999999999999999999999999999999
Q ss_pred HHHHHHHHcc-cCCCceeeeeceeEEEEEEEeecCccc---------hhhHHHHHHHHHHHcCcEEeec---CCEEEEeC
Q psy8199 559 KKITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDPEQ---------IETFSKKFFVAALKNELLLRPI---GNTVYLMP 625 (965)
Q Consensus 559 ~~l~~~L~~l-~~~~~i~~v~g~G~~~~i~~~~~~~~~---------~~~~~~~~~~~l~~~Gi~~~~~---~~~lR~~p 625 (965)
++|+++|+++ .++|.+.+|||.|+|+++++. .+..+ .......+...|+++|+++.+. ++++||.|
T Consensus 360 ~~l~~~L~~l~~~~~~i~~VrG~Glm~gie~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~g~~~~~l~~~P 438 (464)
T PRK06938 360 ERLREHLRQLQRDYPQLGDVRGRGLMLGVEIV-DPQGEPDALGHPPANGELASLIQRECLRRGLILELGGRHGSVVRFLP 438 (464)
T ss_pred HHHHHHHHHHHHhCCCeeeeeccceEEEEEec-cCcccccccccCCccHHHHHHHHHHHHHCCeEEeecCCCCCEEEEEC
Confidence 9999999998 568889999999999999996 22111 1234556888899999999874 47999999
Q ss_pred CcccCHHHHHHHHHhhhcccc
Q psy8199 626 PYILNKNEIQHMTSAIFQTFN 646 (965)
Q Consensus 626 ~~~~t~~~i~~~~~~l~~~~~ 646 (965)
|+++|+++++++++++.+++.
T Consensus 439 pl~it~~eid~~~~~l~~~l~ 459 (464)
T PRK06938 439 PLIITAEQIDEVAEIFAEAVA 459 (464)
T ss_pred CCccCHHHHHHHHHHHHHHHH
Confidence 999999999999999887654
|
|
| >PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-64 Score=570.62 Aligned_cols=387 Identities=34% Similarity=0.591 Sum_probs=337.2
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhH
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGAS 325 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGse 325 (965)
+||||.|||+|||+.+|+|+.+|||+||+|++|+++|++++.+.....+.++...+|+++|++..|.+.++|+|++||||
T Consensus 32 ~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGse 111 (422)
T PRK05630 32 VFLTLEDGSTVIDAMSSWWSAAHGHGHPRLKAAAHKQIDTMSHVMFGGLTHEPAIKLTRKLLNLTDNGLDHVFYSDSGSV 111 (422)
T ss_pred eEEEECCCCEEEEcchhHHHhcCCCCCHHHHHHHHHHHHhCCCcccCCcCCHHHHHHHHHHHhhCCCCcCEEEEeCCcHH
Confidence 99999999999999999999999999999999999999998766544578999999999999999867899999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCC-cCccchhcccCCCeeEecCCCCCCCCCCCChhHHH
Q psy8199 326 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNI-QSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIA 404 (965)
Q Consensus 326 A~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (965)
|+|.|+|+||+|+..+|.++|.+||+++++|||.|.+++++++. ..++..+.+..++..++|.|..... +.+ ..
T Consensus 112 A~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~----~~~-~~ 186 (422)
T PRK05630 112 SVEVAIKMALQYSKGQGHPERTRLLTWRSGYHGDTFAAMSVCDPEGGMHSLWKGTLPEQIFAPAPPVRGS----SPQ-EI 186 (422)
T ss_pred HHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhccCCCcccccccccccCCCCeEcCCCcccCC----ChH-HH
Confidence 99999999999988888888999999999999999999999874 4456666776677778877643211 111 11
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCc
Q psy8199 405 RCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWP 484 (965)
Q Consensus 405 ~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~p 484 (965)
...++++++++. +++||||+||++++.+|+++|+++|+++|+++|++||+++|+|||+|||||+|++|+++++|+.|
T Consensus 187 ~~~~~~~~~~~~---~~iAAvi~EPi~qg~gG~~~~~~~~l~~lr~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~P 263 (422)
T PRK05630 187 SEYLRSLELLID---ETVAAIIIEPIVQGAGGMRFHDVALIEGVRTLCDKHDILLIADEIATGFGRTGELFATLAAGVTP 263 (422)
T ss_pred HHHHHHHHHHHh---hceEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEecceeCCCcCchhhHHHhcCCCC
Confidence 234566777664 57999999993399999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Q psy8199 485 DFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKA 564 (965)
Q Consensus 485 Divt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~ 564 (965)
|++||||+|+|||+|+|++++++++++.+........+.|++||++||++|++++++|++++++++.+++++++++|++.
T Consensus 264 Di~t~gK~l~gG~~p~~av~~~~~i~~~~~~~~~~~~~~h~~T~~g~Pla~aaa~aaL~~l~~~~~~~~~~~~g~~l~~~ 343 (422)
T PRK05630 264 DIMCVGKALTGGFMSFAATLCTDKVAQLISTPNGGGALMHGPTFMANPLACAVAHASLEIIETGMWRKQVKRIEAELIAG 343 (422)
T ss_pred CeeeeechhhcCccccceeeccHHHHHHHhccCCCCccccCCCCcCCHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 99999999999988999999999999988542112346799999999999999999999999889999999999999999
Q ss_pred HHcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecCCEEEEeCCcccCHHHHHHHHHhhhcc
Q psy8199 565 LTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQT 644 (965)
Q Consensus 565 L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~lR~~p~~~~t~~~i~~~~~~l~~~ 644 (965)
|+.+.++|.+.+|||.|+|+++++. +. ..+..+.+.|+++|+++.+.++++||.||++++++++++++++++++
T Consensus 344 L~~l~~~~~v~~vRg~Gl~~~ie~~--~~----~~~~~~~~~~~~~Gl~~~~~g~~l~~~PpL~it~~~i~~~~~~l~~a 417 (422)
T PRK05630 344 LSPLAHLPGVADVRVLGAIGVVEME--QP----VDMEEATQAAVDHGVWLRPFGRLVYVMPPYITTSEQIAQICAALAAA 417 (422)
T ss_pred HHHhhcCCCeeeeeccccEEEEEEC--Cc----ccHHHHHHHHHHCCeEEEecCCEEEEECCccCCHHHHHHHHHHHHHH
Confidence 9888678889999999999999996 21 11346778899999999988899999999999999999999998876
Q ss_pred cc
Q psy8199 645 FN 646 (965)
Q Consensus 645 ~~ 646 (965)
+.
T Consensus 418 l~ 419 (422)
T PRK05630 418 VK 419 (422)
T ss_pred Hh
Confidence 54
|
|
| >PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-64 Score=573.10 Aligned_cols=372 Identities=30% Similarity=0.550 Sum_probs=331.0
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhH
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGAS 325 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGse 325 (965)
+||||.|||+|||+.+|+|+.++||+||+|++|+++|++++.+.+ ..+.++...+|+++|++.+|.+.++|+|++||||
T Consensus 74 ~~l~D~dG~~ylD~~~g~~~~~lGH~~p~v~~Ai~~ql~~l~~~~-~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGsE 152 (459)
T PRK11522 74 NTLVDTQGQEFIDCLGGFGIFNVGHRNPVVVSAVQNQLAKQPLHS-QELLDPLRAMLAKTLAALTPGKLKYSFFCNSGTE 152 (459)
T ss_pred EEEEECCCCEEEECCcCHHhhhcCCCCHHHHHHHHHHHhhCcccc-cccCCHHHHHHHHHHHHhCCCCCCEEEEeCCchH
Confidence 899999999999999999999999999999999999999876554 3567999999999999999877889999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHH
Q psy8199 326 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIAR 405 (965)
Q Consensus 326 A~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (965)
||+.|+|+||.|+.. .+|.+||+++++|||+|.+++++++...++..+.+..+++.++|++
T Consensus 153 Ave~AlklAr~~t~~---~gr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~---------------- 213 (459)
T PRK11522 153 SVEAALKLAKAYQSP---RGKFTFIATSGAFHGKSLGALSATAKSTFRKPFMPLLPGFRHVPFG---------------- 213 (459)
T ss_pred HHHHHHHHHHHHhcc---CCCcEEEEecCCCCCCcHHHhhhcCCcccccCCCCCCCCCcccCCC----------------
Confidence 999999999998532 2377899999999999999999999877777777777777776664
Q ss_pred HHHHHHHHHHHh---CCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCC
Q psy8199 406 CAIFDLEILLKK---NHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEI 482 (965)
Q Consensus 406 ~d~~~le~~l~~---~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~ 482 (965)
|++++++++++ .++++++||+|| +++++|.++||++||++++++|++||+++|+|||||||||+|++|+++++|+
T Consensus 214 -d~~~l~~~l~~~~~~~~~iAavIvEp-v~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~~a~e~~gv 291 (459)
T PRK11522 214 -NIEAMRTALSECKKTGDDVAAVILEP-IQGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQTGMGRTGKMFACEHENV 291 (459)
T ss_pred -CHHHHHHHHHHhhccCCcEEEEEEec-ccCCCCCccCCHHHHHHHHHHHHHcCCEEEeccceecCCccchhhhhhccCC
Confidence 56677777753 346799999999 9999999999999999999999999999999999999999999999999999
Q ss_pred CcceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Q psy8199 483 WPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKIT 562 (965)
Q Consensus 483 ~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~ 562 (965)
.||++||||+|+||++|+|++++++++++.+.. .++.|++||+|||++|++|+++|++++++++.+++++++++|+
T Consensus 292 ~PDivt~gK~lggG~~Pigav~~~~~i~~~~~~----~~~~~~~T~~gnp~~~Aaala~L~~i~~~~l~~~~~~~g~~l~ 367 (459)
T PRK11522 292 QPDILCLAKALGGGVMPIGATIATEEVFSVLFD----NPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDYLL 367 (459)
T ss_pred CCCEEEechhhhCCCccceeEEEcHHHHHHhcc----CCcccCCCCCCCHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 999999999999998899999999999987753 2467999999999999999999999998899999999999999
Q ss_pred HHHHcc-cCCC-ceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec---CCEEEEeCCcccCHHHHHHH
Q psy8199 563 KALTSL-ITHP-KIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI---GNTVYLMPPYILNKNEIQHM 637 (965)
Q Consensus 563 ~~L~~l-~~~~-~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~---~~~lR~~p~~~~t~~~i~~~ 637 (965)
++|+++ .++| .+.+|+|.|+|+++++. + ...+..+.+.|+++||++.+. ++++||.||+++++++++++
T Consensus 368 ~~L~~l~~~~~~~i~~VrG~Gl~~giel~--~----~~~~~~i~~~l~~~Gvl~~~~~~~~~~lr~~Ppl~~t~~~id~~ 441 (459)
T PRK11522 368 DGFRQLAREYPDLVQEARGKGMLMAIEFV--D----NEIGYNFASEMFRQRVLVAGTLNNAKTIRIEPPLTLTIEQCEQV 441 (459)
T ss_pred HHHHHHHHhCCCceeeEEeceeEEEEEec--C----chHHHHHHHHHHHCCeEEEecCCCCCEEEEECCccCCHHHHHHH
Confidence 999998 4677 67899999999999996 2 123456888999999999764 47999999999999999999
Q ss_pred HHhhhcccccHH
Q psy8199 638 TSAIFQTFNELD 649 (965)
Q Consensus 638 ~~~l~~~~~~~~ 649 (965)
++++.+++..+.
T Consensus 442 l~~l~~~l~~~~ 453 (459)
T PRK11522 442 LKAARKALAAMR 453 (459)
T ss_pred HHHHHHHHHHHH
Confidence 999987765443
|
|
| >KOG1402|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-64 Score=503.65 Aligned_cols=369 Identities=30% Similarity=0.486 Sum_probs=328.0
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhH
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGAS 325 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGse 325 (965)
+++||..|++|+||.+++++++-||+||.|++|+++|.++++..+ ..+.+....++++.+..++ +.+.|+-+|+|.|
T Consensus 51 ~~vwD~eGk~ylDflsaysaVnqGhchpki~~aLqeq~~kLtlss-rafYnd~~~~f~~~vt~lf--~~~kvlpmnTGaE 127 (427)
T KOG1402|consen 51 SRVWDPEGKEYLDFLSAYSAVNQGHCHPKIIKALQEQADKLTLSS-RAFYNDVLGEFAEYVTKLF--GYDKVLPMNTGAE 127 (427)
T ss_pred cEEECCCccchhhhhhhhhhcccCCCCHHHHHHHHHHHhHhhhhh-HHHhhhhHHHHHHHHHHhc--Ccceeeecccchh
Confidence 999999999999999999999999999999999999999875443 3466788899999999999 5899999999999
Q ss_pred HHHHHHHHHHHHHH-hcCCC-CceEEEEEcCCccCCccccccccCCcCccchhcccCCC-eeEecCCCCCCCCCCCChhH
Q psy8199 326 AVEVALKMSFHYWY-NKGFL-NKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNK-TYIITTPDSRNINKGNSANE 402 (965)
Q Consensus 326 A~~~Al~~a~~~~~-~~g~~-~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 402 (965)
|+|.|+|+||.|.. .++.+ .+.+|++..++|||.|.++.++++.+.-...|.|+.++ +..+|+
T Consensus 128 a~Eta~KLaR~wgy~~K~ip~nka~il~~~~nFhGrT~~ais~s~d~ds~~~fgp~~P~~~~~v~Y-------------- 193 (427)
T KOG1402|consen 128 AVETACKLARKWGYRKKNIPKNKAKILSAENNFHGRTLGAISLSTDPDSWDGFGPFLPGVVDKVPY-------------- 193 (427)
T ss_pred HHHHHHHHHHHHHHhhccCCccceeEEEecccccCceeeeEEecCCcchhhccCCCCCCcceeecc--------------
Confidence 99999999998743 33434 56779999999999999999999987555667777777 555555
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCC
Q psy8199 403 IARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEI 482 (965)
Q Consensus 403 ~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~ 482 (965)
+|+++|+.+++ .+.++++++|| ||+++|+++||++||+++++||++|++++|+||||||+||||+++++++.++
T Consensus 194 ---~d~eale~~l~--~~~vaaFivEP-IQGEaGVvvP~~GYL~~vreLCtkynvl~I~DEvQTGl~RTGk~la~d~env 267 (427)
T KOG1402|consen 194 ---GDAEALEVALK--SPNVAAFIVEP-IQGEAGVVVPPPGYLKKVRELCTKYNVLLIADEVQTGLARTGKLLACDYENV 267 (427)
T ss_pred ---CCHHHHHHHhc--CCCeeEEEeec-cccccceEeCCchhHHHHHHHHHhhcEEEEehhhhhcccccCcEEEeehhhc
Confidence 68999999998 47899999999 9999999999999999999999999999999999999999999999999999
Q ss_pred CcceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Q psy8199 483 WPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKIT 562 (965)
Q Consensus 483 ~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~ 562 (965)
+||++.|+|+++||.+|++++++++++|..+.. ..|++||+|||++|++|.|+|+++.++++.++.+.+|..|+
T Consensus 268 ~PDivilgKalSGG~~Pvsavl~~~~im~~~~p------geHgsTyggNpLg~~vaiAalevi~eekL~era~~lG~~l~ 341 (427)
T KOG1402|consen 268 RPDIVILGKALSGGVYPVSAVLADDDIMLNIKP------GEHGSTYGGNPLGCAVAIAALEVIVEEKLVERAAKLGEILR 341 (427)
T ss_pred CCCeEEEeccccCCeeeeEEEEecHHHHhccCC------CccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988765 45999999999999999999999999999999999999999
Q ss_pred HHHHcc-cCCCc-eeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec-CCEEEEeCCcccCHHHHHHHHH
Q psy8199 563 KALTSL-ITHPK-IINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-GNTVYLMPPYILNKNEIQHMTS 639 (965)
Q Consensus 563 ~~L~~l-~~~~~-i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-~~~lR~~p~~~~t~~~i~~~~~ 639 (965)
.+|..+ .+.|. +..|||+|++.++++.. . ..+...+..++-.|.++|++.-|. ++.+||+||+.++++++++.++
T Consensus 342 ~~L~~l~~~~p~~v~~VRGrGl~~ai~i~~-~-~~~~~~aw~~cl~lk~~g~LAkptH~~IiRfaPPL~I~e~dl~eg~e 419 (427)
T KOG1402|consen 342 DQLNKLQKKFPHVVKEVRGRGLLNAIVINP-S-KTSGQDAWDVCLALKENGLLAKPTHGNIIRFAPPLVISEEDLREGIE 419 (427)
T ss_pred HHHHhccccccchhheeeccceEEEEEecc-c-cccchhHHHHHHcccccccccCCCCCCeEEecCCcccCHHHHHHHHH
Confidence 999999 55665 56999999999999872 1 122334567788899999999885 4799999999999999999999
Q ss_pred hhhccc
Q psy8199 640 AIFQTF 645 (965)
Q Consensus 640 ~l~~~~ 645 (965)
.+.+.+
T Consensus 420 ~i~k~i 425 (427)
T KOG1402|consen 420 AIEKTI 425 (427)
T ss_pred HHHHHh
Confidence 887654
|
|
| >PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-64 Score=569.41 Aligned_cols=386 Identities=28% Similarity=0.404 Sum_probs=327.3
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCC---CeEEEcCC
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKL---GHCFYGSD 322 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~---~~v~~~~s 322 (965)
+||||.|||+||||.+|+|+.++||+||+|++|+++|+++..+.+...++++...+++++|++.+|... ..++|++|
T Consensus 50 ~~l~D~dG~~ylD~~~g~~~~~lGH~~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~~lAe~L~~~~p~~~~~~~~~f~~~S 129 (459)
T PRK06931 50 VWVTDVEGNQYLDCLAGAGTLALGHNHPDVLQSIQDVLTSGLPLHTLDLTTPLKDAFSEYLLSLLPGQGKEYCLQFTGPS 129 (459)
T ss_pred cEEEeCCCCEEEEcccchhhccCCCCCHHHHHHHHHHHhhhccccccccCCHHHHHHHHHHHHhCCCccccceEEEeCCC
Confidence 999999999999999999999999999999999999998743332235678999999999999987432 24567799
Q ss_pred hhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhH
Q psy8199 323 GASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANE 402 (965)
Q Consensus 323 GseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (965)
||||++.|+|+||.| ++|.+||+++++|||++.+++++++...++..+.++.+++.++|.|+.++.+.+...+.
T Consensus 130 GsEAve~AlklAr~~------tgr~~Ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (459)
T PRK06931 130 GADAVEAAIKLAKTY------TGRSNVISFSGGYHGMTHGALAVTGNLSPKNAVNGLMPGVQFMPYPHEYRCPLGIGGEA 203 (459)
T ss_pred cHHHHHHHHHHHHHh------cCCCeEEEECCCcCCccHHHHhhcCCcccccCCCCCCCCcEEeCCCccccccccCCchh
Confidence 999999999999998 58999999999999999999999987777777777788888999887666554322222
Q ss_pred HHHHHHHHHHHHHHh---CCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccc
Q psy8199 403 IARCAIFDLEILLKK---NHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEH 479 (965)
Q Consensus 403 ~~~~d~~~le~~l~~---~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~ 479 (965)
+.....+.+++.+++ ..+++||||+|| +++++|+++||++||++|+++|++||+++|+|||+|||||+|++|++++
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~iAAvI~EP-iqg~gG~~~~~~~yl~~lr~lc~~~g~LlI~DEV~tGfGRtG~~~a~~~ 282 (459)
T PRK06931 204 GVKALTYYFENFIEDVESGVRKPAAVILEA-IQGEGGVNPAPVEWLQKIREVTQKHGILLIVDEVQAGFARTGKMFAFEH 282 (459)
T ss_pred HHHHHHHHHHHHHHhhhcCCCceEEEEEcc-ccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhcCCcCchHHHhhh
Confidence 222222334444432 246799999999 9999999999999999999999999999999999999999999999999
Q ss_pred cCCCcceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHH
Q psy8199 480 AEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMK 559 (965)
Q Consensus 480 ~~~~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~ 559 (965)
+|+.||++|+||+|+|| +|+|++++++++ +.+.. ..|++||+|||++|++|+++|++++++++.++++++++
T Consensus 283 ~gv~PDivt~gK~l~gG-~Pi~av~~~~~~-~~~~~------~~~~~T~~gnpla~aaala~L~~l~~~~l~~~~~~~G~ 354 (459)
T PRK06931 283 AGIEPDIIVMSKAVGGG-LPLAVLGIKKEF-DAWQP------GGHTGTFRGNQLAMATGLTTLKILKEENLAQNAAERGE 354 (459)
T ss_pred cCCCCCEEEecccccCC-cceeeeeeHHHH-hhccC------CCCCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 99999999999999999 799999988774 65532 35899999999999999999999999999999999999
Q ss_pred HHHHHHHcc-cCCCceeeeeceeEEEEEEEeecCccc---------hhhHHHHHHHHHHHcCcEEeec---CCEEEEeCC
Q psy8199 560 KITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDPEQ---------IETFSKKFFVAALKNELLLRPI---GNTVYLMPP 626 (965)
Q Consensus 560 ~l~~~L~~l-~~~~~i~~v~g~G~~~~i~~~~~~~~~---------~~~~~~~~~~~l~~~Gi~~~~~---~~~lR~~p~ 626 (965)
+|+++|+++ .++|.+.+|+|.|+|+++++. .+..+ .......+...|+++|+++.+. ++++||.||
T Consensus 355 ~l~~~L~~l~~~~~~i~~vrG~Glm~giel~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~~~~~l~~~Pp 433 (459)
T PRK06931 355 WLKAQLAELQKRYPCIGNVRGRGLMIGIEIV-DERQPADAMGSYPADGELAAAIQKACFENGLLLERGGRNGNVVRLLPP 433 (459)
T ss_pred HHHHHHHHHHHhCCCeEeEecCceEEEEEEc-cCcccccccccCCccHHHHHHHHHHHHHCCcEEeecCCCCCEEEEECC
Confidence 999999998 578989999999999999996 22111 1234556888899999999764 478999999
Q ss_pred cccCHHHHHHHHHhhhccccc
Q psy8199 627 YILNKNEIQHMTSAIFQTFNE 647 (965)
Q Consensus 627 ~~~t~~~i~~~~~~l~~~~~~ 647 (965)
+++++++++++++++.+++..
T Consensus 434 l~it~~eid~~~~~l~~~l~~ 454 (459)
T PRK06931 434 LLITQAECEEFIDRFEQALLA 454 (459)
T ss_pred CCcCHHHHHHHHHHHHHHHHH
Confidence 999999999999999876643
|
|
| >PRK05639 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-63 Score=565.83 Aligned_cols=387 Identities=24% Similarity=0.389 Sum_probs=333.8
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhH
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGAS 325 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGse 325 (965)
+||||.|||+|||+.+|+|+.++||+||+|++|+++|++++.+.+...+.++...+|+++|++..|.+.++|+|++||||
T Consensus 45 ~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~ql~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGsE 124 (457)
T PRK05639 45 ALIEDVDGNVFIDFLAGAAAASTGYSHPKLVKAVQEQVALIQHSMIGYTHSERAIRVAEKLAEISPIENPKVLFGLSGSD 124 (457)
T ss_pred CEEEeCCCCEEEECCcCHHhhccCCCCHHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHhhCCCCcCEEEEeCchHH
Confidence 99999999999999999999999999999999999999987665444456788999999999999866789999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCC-cCccchhcccCCCeeEecCCCCCCCCCC----CCh
Q psy8199 326 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNI-QSFKEIYTSLLNKTYIITTPDSRNINKG----NSA 400 (965)
Q Consensus 326 A~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 400 (965)
|||.|+|+||.+ ++|.+||+++++|||+|.+++++++. ..++..+.+..+++.++|+|+.++.+.. .+.
T Consensus 125 A~e~AlklAr~~------tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 198 (457)
T PRK05639 125 AVDMAIKVSKFS------TRRPWILAFIGAYHGQTLGATSVAAFQSSQKRGFSPLMPNVVWIPYPNPYRNPWGINGYEEP 198 (457)
T ss_pred HHHHHHHHHHHh------cCCCeEEEECCCcCCccHHHHHHcCCCcccccCCCCCCCCceEeCCCccccccccccccCCH
Confidence 999999999988 68899999999999999999998874 3455667777778888888865543321 123
Q ss_pred hHHHHHHHHHHHHHHHh---CCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccc
Q psy8199 401 NEIARCAIFDLEILLKK---NHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFAC 477 (965)
Q Consensus 401 ~~~~~~d~~~le~~l~~---~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~ 477 (965)
+.+....++.+++.+.. .++++||||+|| +++++|.++||++||++|+++|++||+++|+|||+|||||+|++|++
T Consensus 199 ~~~~~~~~~~le~~l~~~~~~~~~iAAvI~EP-iqg~gG~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG~~~a~ 277 (457)
T PRK05639 199 DELINRFLDYLENYVFSHVVPPDEVAALFAEP-IQGDAGIVVPPENFFKELKKLLDEHGILLVMDEVQTGIGRTGKWFAS 277 (457)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCceEEEEECC-ccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCcCchHHHH
Confidence 44555567778887643 257899999999 99999999999999999999999999999999999999999999999
Q ss_pred cccCCCcceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHH
Q psy8199 478 EHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQD 557 (965)
Q Consensus 478 ~~~~~~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~ 557 (965)
+++|+.||++||||+|+|| +|+|++++++++++.. . ..+.+||++||++|+|++++|++++++++.++++++
T Consensus 278 ~~~gv~PDiv~~gK~l~gG-~pi~av~~~~~i~~~~-~------~~~~~T~~g~p~~~aaa~a~l~~l~~~~l~~~~~~~ 349 (457)
T PRK05639 278 EWFEVKPDLIIFGKGVASG-MGLSGVIGRKELMDLT-S------GSALLTPAANPVISAAAEATLEIIEEENLLKNALKV 349 (457)
T ss_pred HhcCCCCCEEEechhhcCC-CcceeEEehHHHHhhc-C------CCcccCCCcCHHHHHHHHHHHHHHHHccHHHHHHHH
Confidence 9999999999999999999 6999999999999832 2 135689999999999999999999999999999999
Q ss_pred HHHHHHHHHcc-cCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecC---CEEEEeCCcccCHHH
Q psy8199 558 MKKITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG---NTVYLMPPYILNKNE 633 (965)
Q Consensus 558 ~~~l~~~L~~l-~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~---~~lR~~p~~~~t~~~ 633 (965)
+++|+++|+++ .+++.+.+|+|.|+|+++++...........+..+.+.|+++|+++.+.+ +++||.||+++++++
T Consensus 350 g~~l~~~L~~l~~~~~~~~~VrG~Gl~~gve~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~g~~~~~lr~~Ppl~it~~~ 429 (457)
T PRK05639 350 GEFIKKRLLEMKESFEVIGDVRGKGLMIGVEIVKENGKPDPELTGKICWRAFELGLILPSYGMFGNVIRITPPLVITKEI 429 (457)
T ss_pred HHHHHHHHHHHHHhCCCEEeeccceeEEEEEEecCCCCCCHHHHHHHHHHHHhCCeEEeecCCCCCEEEEeCCCccCHHH
Confidence 99999999998 56888899999999999999621111122345678889999999998753 799999999999999
Q ss_pred HHHHHHhhhccccc
Q psy8199 634 IQHMTSAIFQTFNE 647 (965)
Q Consensus 634 i~~~~~~l~~~~~~ 647 (965)
++++++++.+++..
T Consensus 430 id~~~~~l~~~l~~ 443 (457)
T PRK05639 430 AEKGLEIMERAIKD 443 (457)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998877643
|
|
| >PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-63 Score=584.86 Aligned_cols=420 Identities=24% Similarity=0.422 Sum_probs=341.0
Q ss_pred ccccccccCcccccccccCCCce---------eEEEecCCc----ccccccccchhccCC-CCCHHHHHHHHHHHhhccc
Q psy8199 223 KLGLIHPKNNLKLKWRINLPDDI---------SKLITFSGK----RYLDAISSWWVNLFG-HSNSYINKALKNQLNKLEH 288 (965)
Q Consensus 223 ~l~f~~p~~~~~~~~~~~~p~~~---------~~~~d~dG~----~ylD~~~~~~~~~lG-h~~p~v~~av~~~~~~~~~ 288 (965)
.-.+|||++++..... ..|.+| .|++|.+|+ +|||+.++||++++| |+||+|++|+++|++++.|
T Consensus 322 ~~~iw~Pftq~~~~~~-~~~~vi~~a~G~~~~~~~~d~~G~~~~~~ylD~~sg~w~~~lG~h~~p~I~~Ai~~Qa~rl~h 400 (817)
T PLN02974 322 GEVLWWPFTQHALVPR-DSVTVIDSRCGEDFSVYKPKTNSTCSIVQQFDACASWWTQGPDPTLQPELARAVAYAAGRYGH 400 (817)
T ss_pred hhhccCCcccccccCC-CCceEEEeeecCceeEEEECCCCCcccceEEEcchhHHHhCCCcCCCHHHHHHHHHHHhhCCc
Confidence 4478999999876421 123444 499999998 999999999999999 6899999999999999988
Q ss_pred cccCCCCcHHHHHHHHHHHhhcCCC-CCeEEEcCChhHHHHHHHHHHHH-HHHhcCCC------------CceEEEEEcC
Q psy8199 289 VMLSNLTHKPVIKLSEKLSSLTQYK-LGHCFYGSDGASAVEVALKMSFH-YWYNKGFL------------NKKKFICLQN 354 (965)
Q Consensus 289 ~~~~~~~~~~~~~la~~l~~~~~~~-~~~v~~~~sGseA~~~Al~~a~~-~~~~~g~~------------~~~~vi~~~~ 354 (965)
+++..+.+++..+|+++|++..+.+ +++|+|++|||||||.|||+|++ |++.+|.+ +|.+||.+++
T Consensus 401 v~~~~~~hepa~~LAe~L~~~~~~~~l~rVffs~sGSeAvE~AlKmA~r~y~~~~G~~~~~~~~~~~~~~~r~kIIa~~g 480 (817)
T PLN02974 401 VMFPENVHEPALRAAELLLGGPGKGWASRVFFSDNGSTAIEVALKMAFRKFIVDHGFLENSGNEKRGGDLIELKVLALDG 480 (817)
T ss_pred cccCccCCHHHHHHHHHHHhccCCCCCCEEEECCchHHHHHHHHHHHHHHHHHhcCCCcccccccccccCCCCEEEEECC
Confidence 8766789999999999999965423 68999999999999999999965 77777754 5889999999
Q ss_pred CccCCccccccccCCcCccchh-cc-cCCCeeEecCCCCC--------------CCCC----------------CCChhH
Q psy8199 355 SYHGETLGALAVTNIQSFKEIY-TS-LLNKTYIITTPDSR--------------NINK----------------GNSANE 402 (965)
Q Consensus 355 ~yHg~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~--------------~~~~----------------~~~~~~ 402 (965)
+|||.|.+++++++...++..+ .+ +.+...+++.|... +... ..+...
T Consensus 481 sYHG~T~GAms~sg~~~~~~~~~~p~~~~~~~~~~~P~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~f~~~r~~~~ 560 (817)
T PLN02974 481 SYHGDTLGAMEAQAPSVFTGFLQQPWYSGRGLFLDPPTVGMRNGRWNISLPEGFSSGLEGEETTWESRDEVFDKTRDSTP 560 (817)
T ss_pred CcCCCCHHHHhhCCchhhhcccccccccCCCcccCCCccccccccccccCCccccccccccccccccccccccccccchh
Confidence 9999999999999866655543 23 22233344333211 0000 001123
Q ss_pred HHHHHHHHHHHHHHh-----CCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccc
Q psy8199 403 IARCAIFDLEILLKK-----NHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFAC 477 (965)
Q Consensus 403 ~~~~d~~~le~~l~~-----~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~ 477 (965)
+...+++.+++.|++ .++++||||+||++++.+|+++|+++|+++|+++|++||++||+|||+|||||+|++|++
T Consensus 561 ~~~~~~~~le~~l~~~~~~~~~~~iAAvI~EPviqGaGGmi~~~~~yl~~lr~lc~~~gilLI~DEV~TGfGRtG~~fa~ 640 (817)
T PLN02974 561 LAKAYRSYIEQQLDEYEASAKNGHIAALIIEPVLHGAGGMLLIDPLFQRALVQVCRSRKIPVIFDEVFTGLWRLGVESAW 640 (817)
T ss_pred hhHHHHHHHHHHHHhhccccCCCCEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeecccCCCcccchhhH
Confidence 444566788888863 256899999999558999999999999999999999999999999999999999999999
Q ss_pred cccCCCcceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhccc----HHHH
Q psy8199 478 EHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDN----ILQR 553 (965)
Q Consensus 478 ~~~~~~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~----~~~~ 553 (965)
+++|+.||++|+||+|+|||+|+|++++++++++.|........+.|++||+|||++||+|+++|+++++++ +.++
T Consensus 641 e~~gv~PDIi~~gKgLtgG~~Plaa~l~~~~I~~~f~~~~~~~~~~hg~Ty~gnpl~cAaala~L~~~~~~~~~~~l~~~ 720 (817)
T PLN02974 641 ELLGCKPDIACYAKLLTGGLVPLAATLATEEVFEAFRGPSKLDALLHGHSYTAHPMGCAAAAKALQWYKDPSTNPNLIPP 720 (817)
T ss_pred HhcCCCCCEEeecccccCCCCccEEEEEcHHHHHhhccccccCCcccCCCCCcCHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 999999999999999999999999999999999999632222457899999999999999999999999874 4555
Q ss_pred HHHHHHHHHHHH-HcccCCCceeeeeceeEEEEEEEeecCccc---hhhHHHHHHHHHH-HcCcEEeecCCEEEEeCCcc
Q psy8199 554 ISQDMKKITKAL-TSLITHPKIINFRQKGMIWAFDVIIEDPEQ---IETFSKKFFVAAL-KNELLLRPIGNTVYLMPPYI 628 (965)
Q Consensus 554 ~~~~~~~l~~~L-~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~---~~~~~~~~~~~l~-~~Gi~~~~~~~~lR~~p~~~ 628 (965)
.+++++++.+.| +.+.++|.|.+|||.|+|+++++. .+... ....+..+.+.++ ++|+++++.++++++.||+.
T Consensus 721 ~~~l~~~l~~~l~~~l~~~p~V~~VRg~Gl~~~iel~-~~~~~~~~~~~~a~~v~~~~~~~~Gl~~r~~Gnvi~l~pP~~ 799 (817)
T PLN02974 721 GSRLRELWDEELVRAISSLPNVERVVSLGTVLALELD-AEGSGSGYSSLYARSVVRRLRREDGIYARPLGNVVYLMCGPT 799 (817)
T ss_pred HHHHHHHHHHHHHHHHhhCCCeeEEEeeeeEEEEEEe-cCCcccccchHHHHHHHHHHHHhCCEEEEecCCEEEEeCCCC
Confidence 556666667777 455678999999999999999997 33211 1123456788888 99999999989999999999
Q ss_pred cCHHHHHHHHHhhhcc
Q psy8199 629 LNKNEIQHMTSAIFQT 644 (965)
Q Consensus 629 ~t~~~i~~~~~~l~~~ 644 (965)
+++++++++++++.+.
T Consensus 800 i~~e~l~~~~~~l~~~ 815 (817)
T PLN02974 800 TSPETCTRLLRKVYRR 815 (817)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999988754
|
|
| >PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-62 Score=561.24 Aligned_cols=406 Identities=40% Similarity=0.745 Sum_probs=350.5
Q ss_pred ccccccCcccccccccCCCce-----eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHH
Q psy8199 225 GLIHPKNNLKLKWRINLPDDI-----SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPV 299 (965)
Q Consensus 225 ~f~~p~~~~~~~~~~~~p~~~-----~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~ 299 (965)
.+|+|+...... +.|+.+ +||||.|||+||||.+|+|+++|||+||+|.+|+++|++++.+.....++++..
T Consensus 11 ~~~~~~~~~~~~---~~p~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~ 87 (423)
T PRK05964 11 HVWHPYTQMKLH---PPPIPIVRAEGAYLYLADGRELIDAISSWWVATHGHNHPYIDQAIREQLDRLDHVIFAGFTHEPA 87 (423)
T ss_pred ceecCCCCcccc---CCCeeEEeccccEEEeCCCCEEEEcchhHHhccCCCCCHHHHHHHHHHHhhCCCccccccCCHHH
Confidence 345565443221 245544 999999999999999999999999999999999999999876655446789999
Q ss_pred HHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhccc
Q psy8199 300 IKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSL 379 (965)
Q Consensus 300 ~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~ 379 (965)
.+|+++|++.+|.+.++|+|++|||||++.|+|+||.|+..+|.++|.+||+++++|||++.+++++++...++..+.+.
T Consensus 88 ~~la~~l~~~~p~~~~~v~f~~sGseA~e~A~klar~~~~~~~~~~r~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~ 167 (423)
T PRK05964 88 ERLAQRLVALTPGGLDHVFFSDSGSVAVEVALKMALQYWRNRGEPGRSRFLSLRGGYHGDTIGTMSVGDRGGMHALYTPL 167 (423)
T ss_pred HHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHHHHhcCCCccccccccCc
Confidence 99999999999866889999999999999999999999888888899999999999999999999999877666666666
Q ss_pred CCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeE
Q psy8199 380 LNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHL 459 (965)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~ll 459 (965)
..++.++|+|... +...+++++++++.++++++++||+||++++++|+.+++++||++|+++|++||+++
T Consensus 168 ~~~~~~~~~~~~d----------~~~~~~~~l~~~l~~~~~~iaavi~Ep~i~~~gG~~~~~~~~l~~l~~lc~~~g~ll 237 (423)
T PRK05964 168 LFEQVTAPFPPDG----------YEQATLDALEALLEKHAGEIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLL 237 (423)
T ss_pred CCCCEEeCCCcch----------hHHHHHHHHHHHHHhCCCcEEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEE
Confidence 6667777776321 223468999999987677899999999559999999999999999999999999999
Q ss_pred EEeccccCCCcccccccccccCCCcceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHH
Q psy8199 460 IADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAAL 539 (965)
Q Consensus 460 I~DEv~tg~gr~G~~~~~~~~~~~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~ 539 (965)
|+|||||||||+|.+|+++++++.||++++||+++||++|+|++++++++++.+........+.|++||++||++|++++
T Consensus 238 I~DEv~tg~gr~G~~~a~~~~~v~pDi~~~~K~l~gG~~p~~av~~~~~i~~~~~~~~~~~~~~~~~T~~~np~~~aaa~ 317 (423)
T PRK05964 238 IFDEIATGFGRTGTLFACEQAGVSPDIMCLSKGLTGGYLPLAATLCTAEIFEAFYSDDRAKAFMHSPSYTANPLACAAAN 317 (423)
T ss_pred EEechhhCCCcCcchhHHHhcCCCCCeeeeehhhhcCcccceEEEEcHHHHHhhhcCCcccccccCCCCCcCHHHHHHHH
Confidence 99999999999999999999999999999999999998899999999999998854212334568999999999999999
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHHcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecCC
Q psy8199 540 ATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIGN 619 (965)
Q Consensus 540 a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~ 619 (965)
++|++++++++.++++++++++++.|+++.++|.+.++++.|+|+++++. .+.. ......+.+.|.++||++.+.++
T Consensus 318 a~l~~l~~~~~~~~~~~~g~~l~~~l~~l~~~~~i~~vrg~Gl~~~i~l~-~~~~--~~~~~~l~~~l~~~Gv~v~~~~~ 394 (423)
T PRK05964 318 ASLDLFEDEPVLERVAALSAGLAEGLEPFRDLPGVADVRVLGAIGAVELD-RPVL--ERDGPALRAFALERGVLLRPLGN 394 (423)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHhhccCCCeEEeecccEEEEEEec-cCcc--hhHHHHHHHHHHHCCeEEEecCC
Confidence 99999988889999999999999999988668888889999999999996 2210 12345688899999999998888
Q ss_pred EEEEeCCcccCHHHHHHHHHhhhcccc
Q psy8199 620 TVYLMPPYILNKNEIQHMTSAIFQTFN 646 (965)
Q Consensus 620 ~lR~~p~~~~t~~~i~~~~~~l~~~~~ 646 (965)
.+||+||+++++++++++++++.+++.
T Consensus 395 ~lR~~p~l~~t~edId~~v~~l~~al~ 421 (423)
T PRK05964 395 TIYLMPPYIITAEELDRITDAIVEVAD 421 (423)
T ss_pred EEEEeCCcccCHHHHHHHHHHHHHHHh
Confidence 999999999999999999999876653
|
|
| >TIGR00709 dat 2,4-diaminobutyrate 4-transaminases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-62 Score=559.71 Aligned_cols=386 Identities=27% Similarity=0.410 Sum_probs=328.1
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCC---CCeEEEcCC
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYK---LGHCFYGSD 322 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~---~~~v~~~~s 322 (965)
+||||.|||+||||.+|+|+.++||+||+|++|+++|++++.+.+...+.++...+|+++|++.+|.. ...++|++|
T Consensus 31 ~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~~~~~f~~~s 110 (442)
T TIGR00709 31 CWVTDVEGKEYLDFLAGAGTLALGHNHPNMKQKILDYLQSGLPLHTLDLTTPLKDAFIEALLNIIPKRKMDYKLQFPGPS 110 (442)
T ss_pred cEEEeCCCCEEEEccccHhhhcCCCCCHHHHHHHHHHHHhccCccccccCcHHHHHHHHHHHHhCCCcCCCccEEEeCCC
Confidence 99999999999999999999999999999999999999986554434578899999999999998743 234666799
Q ss_pred hhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhH
Q psy8199 323 GASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANE 402 (965)
Q Consensus 323 GseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (965)
|||||+.|+|+||.| ++|.+||+++++|||++.+++++++.+.++..+.+..+++.++|.|+....+.+...+.
T Consensus 111 GsEA~e~AlklAr~~------tgr~~Ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (442)
T TIGR00709 111 GADAVEAAIKLAKTY------TGRTNVISFSGGFHGMTIGALAVTGNLFAKNAVGMLMPGVQFMPYPHEYRCPFGIGGEA 184 (442)
T ss_pred HHHHHHHHHHHHHHh------cCCCeEEEEcCCcCCchHHHHhhcCChhhhccCCCCCCCcEEeCCCccccccccCCchh
Confidence 999999999999998 58899999999999999999999987666666777777788888876655543322222
Q ss_pred HHHHHHHHHHHHHHh---CCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccc
Q psy8199 403 IARCAIFDLEILLKK---NHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEH 479 (965)
Q Consensus 403 ~~~~d~~~le~~l~~---~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~ 479 (965)
......+.+++.++. ..+++++||+|| +++++|.++||++||++|+++|++||+++|+|||||||||+|++|++++
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~iaavi~Ep-i~g~~G~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~ 263 (442)
T TIGR00709 185 GSNASIEYFENFIEDVESGVDKPAAVILEA-IQGEGGVVAAPSEWLQKIREVTRKHDIKLILDEVQAGFGRSGTMFAFEH 263 (442)
T ss_pred HHHHHHHHHHHHHHhhccCCCceEEEEEcc-ccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCchhHHHH
Confidence 222233445555532 246799999999 9999999999999999999999999999999999999999999999999
Q ss_pred cCCCcceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHH
Q psy8199 480 AEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMK 559 (965)
Q Consensus 480 ~~~~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~ 559 (965)
+|+.||++|+||+|+|| +|+|+++++++ ++.+.. ..|++||++||++|+||+++|++++++++.++++++++
T Consensus 264 ~gv~PDiv~~gK~l~~G-~Pigav~~~~~-~~~~~~------~~~~~T~~gnpla~aaa~a~L~~i~~~~l~~~~~~~g~ 335 (442)
T TIGR00709 264 AGIEPDFVVMSKAVGGG-LPLAVLLIAPE-FDAWQP------AGHTGTFRGNQLAMVTGTEALNYWKDDNLAQNAQERGE 335 (442)
T ss_pred cCCCCcEEEEcccccCC-cccEEEEEchH-HhccCC------CcCCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 99999999999999999 89999999988 455532 35889999999999999999999998999999999999
Q ss_pred HHHHHHHcc-cCCCceeeeeceeEEEEEEEeecCccc---------hhhHHHHHHHHHHHcCcEEeec---CCEEEEeCC
Q psy8199 560 KITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDPEQ---------IETFSKKFFVAALKNELLLRPI---GNTVYLMPP 626 (965)
Q Consensus 560 ~l~~~L~~l-~~~~~i~~v~g~G~~~~i~~~~~~~~~---------~~~~~~~~~~~l~~~Gi~~~~~---~~~lR~~p~ 626 (965)
+|+++|+++ .++|.+.+|||.|+|+++++. .+..+ .......+...|+++|+++.+. ++++||.||
T Consensus 336 ~l~~~L~~l~~~~~~v~~vrG~Gl~~~ie~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~~~~~l~~~Pp 414 (442)
T TIGR00709 336 RITSFLDDMIKEHPCIGNVRGRGLMQGIMIV-DERQSKDATGAYPRDCELAAAIQGACFENGLLLETGGREGEVFRLLCP 414 (442)
T ss_pred HHHHHHHHHHHhCCCeeeeeccceEEEEEEc-cCcccccccccCCcchHHHHHHHHHHHHCCeEEeecCCCCCEEEEECC
Confidence 999999998 578889999999999999996 22111 1124556888899999999764 579999999
Q ss_pred cccCHHHHHHHHHhhhccccc
Q psy8199 627 YILNKNEIQHMTSAIFQTFNE 647 (965)
Q Consensus 627 ~~~t~~~i~~~~~~l~~~~~~ 647 (965)
+++|+++++++++++.+++.+
T Consensus 415 l~it~~ei~~~~~~l~~~l~~ 435 (442)
T TIGR00709 415 ITIDQEECEEGISRFKQAVEE 435 (442)
T ss_pred CCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999877654
|
This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase. |
| >PRK06058 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-62 Score=560.75 Aligned_cols=383 Identities=28% Similarity=0.432 Sum_probs=327.1
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCC-CCeEEEcCChh
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYK-LGHCFYGSDGA 324 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~-~~~v~~~~sGs 324 (965)
+||||.|||+|||+.+|+|+.+|||+||+|++|+++|++++.++....+.++...+++++|++.+|.. .++++|++|||
T Consensus 48 ~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~~v~f~~sGs 127 (443)
T PRK06058 48 GIVEDVDGNRLIDLGSGIAVTSVGNSAPRVVEAVREQVARFTHTCFMVTPYEGYVAVAEQLNRLTPGDHEKRSALFNSGA 127 (443)
T ss_pred eEEEeCCCCEEEEcCcchhhhccCCCCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCCCCCEEEEeCCcH
Confidence 99999999999999999999999999999999999999987655544567899999999999998743 36999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCC-cCccchhcccCCCeeEecCCCCCCCCCC--CChh
Q psy8199 325 SAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNI-QSFKEIYTSLLNKTYIITTPDSRNINKG--NSAN 401 (965)
Q Consensus 325 eA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 401 (965)
||++.|+|+||.| ++|++||+++++|||++.+++++++. ..++..+.++.+++..+|.|..++.+.. ...+
T Consensus 128 eA~e~AlklAr~~------tgr~~ii~~~~~yHG~t~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (443)
T PRK06058 128 EAVENAVKIARSY------TGRQAVVVFDHAYHGRTNLTMALTAKSMPYKSGFGPFAPEVYRAPMSYPYRDPKGLATDGE 201 (443)
T ss_pred HHHHHHHHHHHHh------hCCCeEEEECCCcCcChHHHHhhcCCCcccccccCCCCCCceEcCCCcccccccccccchH
Confidence 9999999999998 58899999999999999999998874 3356666666677777776544332211 1111
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccC
Q psy8199 402 EIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAE 481 (965)
Q Consensus 402 ~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~ 481 (965)
.+...+++.+++.+. ++++||||+|| +++++|.++|+++||++|+++|++||+++|+|||||||||+|++|+++++|
T Consensus 202 ~~~~~~~~~l~~~~~--~~~iAavi~EP-i~g~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfgRtG~~fa~~~~g 278 (443)
T PRK06058 202 EAAARAITVIEKQVG--ADNLAAVIIEP-IQGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQTGFARTGAWFACEHEG 278 (443)
T ss_pred HHHHHHHHHHHHhhC--CCceEEEEECC-ccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcChhhhHHHhcC
Confidence 222234555655543 46899999999 999999999999999999999999999999999999999999999999999
Q ss_pred CCcceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q psy8199 482 IWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKI 561 (965)
Q Consensus 482 ~~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l 561 (965)
+.||++|+||+++|| +|+|++++++++++.+.. ..|++||++||++|+||+++|++++++++.+++++++++|
T Consensus 279 v~PDiv~~gK~l~~G-~Pi~av~~~~~i~~~~~~------~~~~~T~~gnpl~~aaa~a~L~~~~~~~l~~~~~~~g~~l 351 (443)
T PRK06058 279 IVPDLITTAKGIAGG-LPLSAVTGRAEIMDAPHP------GGLGGTYGGNPVACAAALAAIETIEEDDLVARARQIEALM 351 (443)
T ss_pred CCCCEEEEcccccCC-CccEEEEEcHHHHhhccC------CCCCCCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 999999999999999 799999999999998864 3588999999999999999999999889999999999999
Q ss_pred HHHHHcc-cCCCceeeeeceeEEEEEEEeecCc--cchhhHHHHHHHHHHHcCcEEeec---CCEEEEeCCcccCHHHHH
Q psy8199 562 TKALTSL-ITHPKIINFRQKGMIWAFDVIIEDP--EQIETFSKKFFVAALKNELLLRPI---GNTVYLMPPYILNKNEIQ 635 (965)
Q Consensus 562 ~~~L~~l-~~~~~i~~v~g~G~~~~i~~~~~~~--~~~~~~~~~~~~~l~~~Gi~~~~~---~~~lR~~p~~~~t~~~i~ 635 (965)
.++|+++ .+++.+.+|+|.|+|+++++. .+. .+....+..+.+.|+++||++.+. ++++||.||+++++++++
T Consensus 352 ~~~L~~l~~~~~~i~~vrg~G~~~~i~~~-~~~~~~~~~~~~~~l~~~~~~~Gv~~~~~~~~~~~lr~~Ppl~~t~~~i~ 430 (443)
T PRK06058 352 TDRLRALAAEDDRIGDVRGRGAMIAIELV-KPGTTEPDAELTKALAAAAHAAGVIVLTCGTYGNVIRLLPPLVIGDELLR 430 (443)
T ss_pred HHHHHHHHhhCCcEEeeeccceEEEEEEe-cCCCCCCcHHHHHHHHHHHHHCCeEEeccCCCCCEEEEECCCccCHHHHH
Confidence 9999998 557888999999999999996 221 112335667888899999999874 479999999999999999
Q ss_pred HHHHhhhccc
Q psy8199 636 HMTSAIFQTF 645 (965)
Q Consensus 636 ~~~~~l~~~~ 645 (965)
++++++.+++
T Consensus 431 ~~~~~l~~~l 440 (443)
T PRK06058 431 EGLDVLEAAL 440 (443)
T ss_pred HHHHHHHHHH
Confidence 9999987654
|
|
| >PRK06082 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-62 Score=557.59 Aligned_cols=383 Identities=27% Similarity=0.450 Sum_probs=333.4
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhH
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGAS 325 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGse 325 (965)
+||||.|||+|||+.+ .|+.+|||+||+|++|+++|++++.+.+ ..+.++...+|+++|++.+|...++|+|++||||
T Consensus 64 ~~l~D~dG~~ylD~~g-~~~~~lGh~~p~v~~Ai~~ql~~~~~~~-~~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGse 141 (459)
T PRK06082 64 IYIEDVDGKKYMDFHG-NNVHQLGYGHPHVIEKVKEQMAKLPFSP-RRFTNETAIECAEKLTEIAGGELNRVLFAPGGTS 141 (459)
T ss_pred eEEEECCCCEEEEccc-HhhcccCCCCHHHHHHHHHHHHhCCCcc-CccCCHHHHHHHHHHHHhCCCCCCEEEECCCcHH
Confidence 8999999999999974 4899999999999999999999876543 3678999999999999999855789999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHH
Q psy8199 326 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIAR 405 (965)
Q Consensus 326 A~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (965)
|++.|+|+||.| ++|.+||+++++|||++.+++++++.+.++..+.+..+++.++|.|..+..+.. +.+.+..
T Consensus 142 Ave~AlklAr~~------tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 214 (459)
T PRK06082 142 AIGMALKLARHI------TGNFKVVSLWDSFHGASLDAISVGGEACFRQGMGPLMAGVERIPPAVSYRGAFP-DADGSDV 214 (459)
T ss_pred HHHHHHHHHHHh------cCCCEEEEEeCCCcCccHHHHhhcCCcccccCCCCCCCCCEEeCCCcccccccC-ChhHHHH
Confidence 999999999998 588999999999999999999999887777777888888888888765554322 2244566
Q ss_pred HHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcc
Q psy8199 406 CAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPD 485 (965)
Q Consensus 406 ~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pD 485 (965)
.++++|++++++. ++++|||+|| ++++ |.++|+++||++|+++|++||+++|+|||+|||||+|++|+++++|+.||
T Consensus 215 ~~~~~l~~~i~~~-~~vAavIvEP-v~g~-g~~~~~~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~fa~e~~gv~PD 291 (459)
T PRK06082 215 HYADYLEYVIEKE-GGIGAFIAEA-VRNT-DVQVPSKAYWKRVREICDKHNVLLIIDEIPNGMGRTGEWFTHQAYGIEPD 291 (459)
T ss_pred HHHHHHHHHHhcC-CCEEEEEECC-ccCC-CCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhhHhHhhCCCCC
Confidence 6788999988753 5799999999 8988 57788999999999999999999999999999999999999999999999
Q ss_pred eeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Q psy8199 486 FLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKAL 565 (965)
Q Consensus 486 ivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L 565 (965)
++||||+|+||++|+|++++++++++.+.. .+.| +||++||++|++|+++|++++++++.+++++++++|+++|
T Consensus 292 iv~~gKgl~gG~~P~~av~~~~~i~~~~~~-----~~~~-~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L 365 (459)
T PRK06082 292 ILCIGKGLGGGLVPIAAMITKDKYNTAAQI-----SLGH-YTHEKSPLGCAAALATIEVIEQEGLLEKVKADSQFMRERL 365 (459)
T ss_pred EEEecccccCCCCcceEEEEcHHHHhhccC-----CCCC-CCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 999999999997899999999998765421 2345 8999999999999999999988899999999999999999
Q ss_pred Hcc-cCCCceeeeeceeEEEEEEEeecCccc---hhhHHHHHHHHHHHcCcEEeec-CCEEEEeCCcccCHHHHHHHHHh
Q psy8199 566 TSL-ITHPKIINFRQKGMIWAFDVIIEDPEQ---IETFSKKFFVAALKNELLLRPI-GNTVYLMPPYILNKNEIQHMTSA 640 (965)
Q Consensus 566 ~~l-~~~~~i~~v~g~G~~~~i~~~~~~~~~---~~~~~~~~~~~l~~~Gi~~~~~-~~~lR~~p~~~~t~~~i~~~~~~ 640 (965)
+++ .+++.+.+|+|.|+|+++++. .+... ....+..+...|+++||++.+. ++++||+||++++++++++++++
T Consensus 366 ~~l~~~~~~i~~vrG~Gl~~~ve~~-~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~~~i~~~Ppl~it~~eid~~~~~ 444 (459)
T PRK06082 366 LEMKAKYPLIGDVRGIGLLWGVELV-TDRHTKERAYDEAEAVLYRCLNNGLSFKVSQGNVIQLSPPLIITREELTQALAI 444 (459)
T ss_pred HHHHhhCCCeeeeeeccceeEEEEc-cCccccCccHHHHHHHHHHHHhCCCEEEecCCCEEEEeCCCccCHHHHHHHHHH
Confidence 998 568888999999999999996 22211 1123556788899999999875 58999999999999999999999
Q ss_pred hhccccc
Q psy8199 641 IFQTFNE 647 (965)
Q Consensus 641 l~~~~~~ 647 (965)
+.+++.+
T Consensus 445 l~~~l~~ 451 (459)
T PRK06082 445 LEEAIAK 451 (459)
T ss_pred HHHHHHH
Confidence 9876644
|
|
| >PRK08593 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-62 Score=553.02 Aligned_cols=387 Identities=25% Similarity=0.436 Sum_probs=336.0
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCC-CeEEEcCChh
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKL-GHCFYGSDGA 324 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~-~~v~~~~sGs 324 (965)
+||||.|||+|||+.+|+|+.+|||+||+|++|+.+|++++.+.+...+.++...+++++|++.+|... ++|+|++|||
T Consensus 34 ~~l~D~dG~~ylD~~~g~~~~~lGH~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~~v~f~~SGs 113 (445)
T PRK08593 34 ATLTDVDGKTYIDLLASASSQNVGHAPPRVVEAIKAQADKFIHYTPAYMYHEPLVRLAKKLCELAPGDFEKRVTFGLSGS 113 (445)
T ss_pred CEEEeCCCCEEEECCccHHhhcCCCCCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCCCCCEEEECCchH
Confidence 999999999999999999999999999999999999999987765555789999999999999998553 6999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCc-CccchhcccCCCeeEecCCCCCCCCCCCChhHH
Q psy8199 325 SAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQ-SFKEIYTSLLNKTYIITTPDSRNINKGNSANEI 403 (965)
Q Consensus 325 eA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (965)
|||+.|+|+||.| ++|.+||+++++|||++.+++++++.. .++..+.+..+++.++|.|+....+.+......
T Consensus 114 eA~e~AiklAr~~------tgr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 187 (445)
T PRK08593 114 DANDGIIKFARAY------TGRPYIISFTNAYHGSTYGSLSMSGISLNMRRKYGPLLPGFVHIPFPDKYRGMYEEPDANF 187 (445)
T ss_pred HHHHHHHHHHHHh------hCCCeEEEECCCcCCCcHHHHhhcCCCcccccCCCCCCCCcEEeCCCccccccccCCcHHH
Confidence 9999999999998 588999999999999999999998843 345566777788888888876554433332333
Q ss_pred HHHHHHHHHHHHHhC--CCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccC
Q psy8199 404 ARCAIFDLEILLKKN--HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAE 481 (965)
Q Consensus 404 ~~~d~~~le~~l~~~--~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~ 481 (965)
....++++++++.+. .+++++||+|| +++++|.++||++||++|+++|++||+++|+|||||||||+|.+|+++++|
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~iAavI~EP-v~g~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tg~GrtG~~~a~~~~g 266 (445)
T PRK08593 188 VEEYLAPLKEMFEKYLPADEVACIVIET-IQGDGGLLEPVPGYFEALYKFCREHGILFAVDDIQQGLGRTGKWSSISHFN 266 (445)
T ss_pred HHHHHHHHHHHHHhhcCCCceEEEEEcc-ccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCchHHHHHhcC
Confidence 344567787777543 46899999999 999999999999999999999999999999999999999999999999999
Q ss_pred CCcceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q psy8199 482 IWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKI 561 (965)
Q Consensus 482 ~~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l 561 (965)
+.||++|+||+++|| +|+|++++++++++.+.. ..|++||++||++|++++++|++++++++.+++++++++|
T Consensus 267 v~pDi~t~gK~l~~G-~p~gav~~~~~i~~~~~~------~~~~~T~~~~pl~~aaa~a~l~~l~~~~l~~~~~~~g~~l 339 (445)
T PRK08593 267 ITPDLMSFGKSLAGG-MPMSAIVGRKEIMESLEA------PAHLFTTGANPVSCAAALATIDMIEDESLLQRSAEKGEYA 339 (445)
T ss_pred CCCCEeeecccccCC-cccEEEEEcHHHHhhhcc------CCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 999999999999999 799999999999998853 1467899999999999999999999889999999999999
Q ss_pred HHHHHcc-cCCCceeeeeceeEEEEEEEeecCcc---chhhHHHHHHHHHHHcCcEEeec-CCEEEEeCCcccCHHHHHH
Q psy8199 562 TKALTSL-ITHPKIINFRQKGMIWAFDVIIEDPE---QIETFSKKFFVAALKNELLLRPI-GNTVYLMPPYILNKNEIQH 636 (965)
Q Consensus 562 ~~~L~~l-~~~~~i~~v~g~G~~~~i~~~~~~~~---~~~~~~~~~~~~l~~~Gi~~~~~-~~~lR~~p~~~~t~~~i~~ 636 (965)
+++|+++ .++|.+.+|+|.|+|+++++. .+.. .....+..+...|+++||++.+. ++.+||+||+++|++++++
T Consensus 340 ~~~L~~l~~~~~~v~~vrG~Gl~~gi~l~-~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~~~~~lr~~p~l~~t~~~id~ 418 (445)
T PRK08593 340 RKRFDQWVSKYNFVGDVRGYGLSIGIDIV-SDKKLKTRDNEAALKICNYCFEHGVVIIAVAGNVLRFQPPLVITYEQLDT 418 (445)
T ss_pred HHHHHHHHhcCCcEEEEeccceEEEEEEe-cCCCcCCCcHHHHHHHHHHHHHCCeEEeccCCCEEEEECCCccCHHHHHH
Confidence 9999998 668889999999999999986 2211 11234557888999999999774 5899999999999999999
Q ss_pred HHHhhhccccc
Q psy8199 637 MTSAIFQTFNE 647 (965)
Q Consensus 637 ~~~~l~~~~~~ 647 (965)
+++++.+++..
T Consensus 419 ~~~~l~~~l~~ 429 (445)
T PRK08593 419 ALNTIEQAFTA 429 (445)
T ss_pred HHHHHHHHHHH
Confidence 99998876654
|
|
| >PRK05769 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-61 Score=544.80 Aligned_cols=384 Identities=28% Similarity=0.445 Sum_probs=332.6
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCC-CCeEEEcCChh
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYK-LGHCFYGSDGA 324 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~-~~~v~~~~sGs 324 (965)
+||||.|||+|||+.+|+|+.++||+||+|++|+++|++++.+.+...+.++...+|+++|++.+|.+ .++|+|++|||
T Consensus 46 ~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~lAe~L~~~~p~~~~~~v~f~~SGs 125 (441)
T PRK05769 46 VWVEDVDGNVYLDFNAGIAVTNVGHAHPKVVKAVKEQAEKFLHYSLTDFYYEPAVELAERLVEIAPGGFEKKVFFTNSGT 125 (441)
T ss_pred EEEEeCCCCEEEECCCchhhcccCCCCHHHHHHHHHHHHhccCccCcccCCHHHHHHHHHHHHhCCCCCCCEEEECCchH
Confidence 99999999999999999999999999999999999999988766555677899999999999998743 58999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCC-cCccchhcccCCCeeEecCCCCCCCCCC-CChhH
Q psy8199 325 SAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNI-QSFKEIYTSLLNKTYIITTPDSRNINKG-NSANE 402 (965)
Q Consensus 325 eA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 402 (965)
|||+.|+|+||.| ++|.+|++++++|||+|.+++++++. ..++..+.+..+++.++|.|+....+++ .+.++
T Consensus 126 EA~e~AlklAr~~------tgr~~Ii~~~~~yHG~t~~~ls~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (441)
T PRK05769 126 ESNEAAIKIARYH------TGRKYIIAFLGAFHGRTYGSLSLTASKPVQRKGFFPLMPGVIHVPYPNPYRNPWGIENPEE 199 (441)
T ss_pred HHHHHHHHHHHHH------hCCCeEEEECCCcCCccHHHHHhcCCCcccccCCCCCCCCeEEeCCCccccccccCCchHH
Confidence 9999999999998 58899999999999999999998764 3456667777788888888765554432 22333
Q ss_pred HHHHHHHHHHH-HHHh--CCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccc
Q psy8199 403 IARCAIFDLEI-LLKK--NHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEH 479 (965)
Q Consensus 403 ~~~~d~~~le~-~l~~--~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~ 479 (965)
+...+++.+++ ++++ .++++++||+|| +++++|.++|+++||++|+++|++||+++|+|||+|||||+|++|++++
T Consensus 200 ~~~~~~~~le~~~~~~~~~~~~iaavi~Ep-v~g~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~tG~gr~G~~~a~~~ 278 (441)
T PRK05769 200 CGNAVLDFIEDYLFKKLVPPEEVAAIIVEP-IQGEGGYVVPPKNFFKELRKLADKYGILLIDDEVQTGMGRTGKMFAIEH 278 (441)
T ss_pred HHHHHHHHHHHHHHhhccCCCceEEEEECc-ccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccceehhhc
Confidence 44456777887 4443 356899999999 9999999999999999999999999999999999999999999999999
Q ss_pred cCCCcceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHH
Q psy8199 480 AEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMK 559 (965)
Q Consensus 480 ~~~~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~ 559 (965)
+|+.||++||||+++|| +|+|++++++++++.+. ..|++||++||++|++|+++|+++++ ++.++++++++
T Consensus 279 ~gv~pDivt~~K~l~~G-~p~gav~~~~~i~~~~~-------~~~~~T~~g~p~~~aaa~a~L~~l~~-~~~~~~~~~g~ 349 (441)
T PRK05769 279 FGVEPDIITLAKAIAGG-LPLGAVIGRAELMFLPP-------GSHANTFGGNPVAAAAALATLEELEE-GLLENAQKLGE 349 (441)
T ss_pred cCCCCCEEEEcccccCC-cccEEEEEehhhhhcCC-------CCCCCCCCcCHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 99999999999999999 79999999999986432 25889999999999999999999988 99999999999
Q ss_pred HHHHHHHcc-cCCCceeeeeceeEEEEEEEeecCc-cchhhHHHHHHHHHHHcCcEEeecC-CEEEEeCCcccCHHHHHH
Q psy8199 560 KITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDP-EQIETFSKKFFVAALKNELLLRPIG-NTVYLMPPYILNKNEIQH 636 (965)
Q Consensus 560 ~l~~~L~~l-~~~~~i~~v~g~G~~~~i~~~~~~~-~~~~~~~~~~~~~l~~~Gi~~~~~~-~~lR~~p~~~~t~~~i~~ 636 (965)
+|+++|+++ .+++.+.+++|.|+|+++++. .+. .........+.+.|+++||++.+.+ +.+||+||++++++++++
T Consensus 350 ~l~~~L~~l~~~~~~~~~vrg~G~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~Gil~~~~~~~~lr~~p~l~~t~~~id~ 428 (441)
T PRK05769 350 YLRKELKELKEKYEFIGDVRGLGLMIGVELV-KDRKEPDPKLRDKVLYEAFKRGLLLLGAGKSAIRIIPPLIITEEEADI 428 (441)
T ss_pred HHHHHHHHHHHhCCCeeeeecceEEEEEEec-cCCccccHHHHHHHHHHHHhCCcEEecCCCCEEEEeCCCCCCHHHHHH
Confidence 999999988 568888899999999999996 221 1122345568888999999998865 799999999999999999
Q ss_pred HHHhhhcccc
Q psy8199 637 MTSAIFQTFN 646 (965)
Q Consensus 637 ~~~~l~~~~~ 646 (965)
+++++.+++.
T Consensus 429 ~~~~l~~~l~ 438 (441)
T PRK05769 429 GLEILEEAIK 438 (441)
T ss_pred HHHHHHHHHH
Confidence 9999887653
|
|
| >PRK07495 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-61 Score=542.72 Aligned_cols=381 Identities=28% Similarity=0.444 Sum_probs=331.9
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCC-CeEEEcCChh
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKL-GHCFYGSDGA 324 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~-~~v~~~~sGs 324 (965)
+||||.|||+|||+.+|+|+.+|||+||+|++|+++|++++.+.+...++++...+++++|++.+|.+. ++|+|++|||
T Consensus 32 ~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~l~~~~~~~~~~~~~~~la~~l~~~~p~~~~~~v~f~~SGs 111 (425)
T PRK07495 32 AEIWDKEGRRYIDFAAGIAVVNTGHRHPRVIAAVKAQLDRFTHTCHQVVPYENYVRLAERLNALVPGDFAKKTIFVTTGA 111 (425)
T ss_pred cEEEeCCCCEEEEccccHHhhccCCCCHHHHHHHHHHHhhccCcccCccCCHHHHHHHHHHHHhCCCCCCCEEEECCchH
Confidence 999999999999999999999999999999999999999986654446788999999999999998543 7999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCC-cCccchhcccCCCeeEecCCCCCCCCCCCChhHH
Q psy8199 325 SAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNI-QSFKEIYTSLLNKTYIITTPDSRNINKGNSANEI 403 (965)
Q Consensus 325 eA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (965)
|||+.|+|+||.| ++|.+||+++++|||+|.+++++++. ..++..+.+..+++.++|+|...... +
T Consensus 112 eA~e~AlklAr~~------tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~---- 178 (425)
T PRK07495 112 EAVENAVKIARAA------TGRSAVIAFGGGFHGRTFMGMSLTGKVVPYKVGFGAMMPDVYHVPFPVELHGV---S---- 178 (425)
T ss_pred HHHHHHHHHHHHh------hCCCeEEEECCCcCCccHHHhhhcCCCcccccCCCCCCCCeEEecCCcccccc---c----
Confidence 9999999999998 58899999999999999999998875 45666777777788888887543321 1
Q ss_pred HHHHHHHHHHHHHh--CCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccC
Q psy8199 404 ARCAIFDLEILLKK--NHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAE 481 (965)
Q Consensus 404 ~~~d~~~le~~l~~--~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~ 481 (965)
...+++++++++.+ ..+++++|++|| +++++|.+++|++|+++|+++|++||+++|+|||||||||+|++|++++++
T Consensus 179 ~~~~~~~l~~~~~~~~~~~~iaavi~EP-v~g~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~a~~~~g 257 (425)
T PRK07495 179 VEQSLAALDKLFKADVDPQRVAAIIIEP-VQGEGGFYPAPAAFMKALRELCDQHGILLIADEVQTGFARTGKLFAMEHHE 257 (425)
T ss_pred HHHHHHHHHHHHHhccCCCceEEEEECC-ccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhcCCcCCCceeecccC
Confidence 12457778888763 246799999999 999999899999999999999999999999999999999999999999999
Q ss_pred CCcceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q psy8199 482 IWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKI 561 (965)
Q Consensus 482 ~~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l 561 (965)
+.||++||||+++|| +|+|++++++++++.+.. ..+++||++||++|++++++|++++++++.+++++++++|
T Consensus 258 v~pDi~tlsK~l~~G-~pigav~~~~~i~~~~~~------~~~~~T~~~~pl~~aaa~a~l~~l~~~~l~~~~~~~g~~l 330 (425)
T PRK07495 258 VAADLTTMAKGLAGG-FPLAAVTGRAEIMDAPGP------GGLGGTYGGNPLGIAAAHAVLDVIEEEDLCERANQLGNRL 330 (425)
T ss_pred CCCCEEeehhhhcCC-ccceEEEEcHHHHhccCC------CCcCCCCCCCHHHHHHHHHHHHHHHhchHHHHHHHHHHHH
Confidence 999999999999999 799999999999988754 2478999999999999999999999889999999999999
Q ss_pred HHHHHcc-cCCCceeeeeceeEEEEEEEeecCc-cchhhHHHHHHHHHHHcCcEEeec---CCEEEEeCCcccCHHHHHH
Q psy8199 562 TKALTSL-ITHPKIINFRQKGMIWAFDVIIEDP-EQIETFSKKFFVAALKNELLLRPI---GNTVYLMPPYILNKNEIQH 636 (965)
Q Consensus 562 ~~~L~~l-~~~~~i~~v~g~G~~~~i~~~~~~~-~~~~~~~~~~~~~l~~~Gi~~~~~---~~~lR~~p~~~~t~~~i~~ 636 (965)
+++|+++ .++|.+.+++|.|+|+++++...+. .+.......+.+.|+++|+++.+. ++++||.||++++++++++
T Consensus 331 ~~~L~~l~~~~~~i~~vrG~Gl~~~iel~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~g~~~~~~r~~Ppl~it~~~id~ 410 (425)
T PRK07495 331 KQRLASLRETVPEIADIRGPGFMNAVEFNDADSGLPSAEFANRVRLKALEKGLILLTCGVHGNVIRFLAPITIQDDVFAE 410 (425)
T ss_pred HHHHHHHHhhCCCeeeeecCceEEEEEEecCCCCCccHHHHHHHHHHHHHCCeEEeecCCCCCEEEEeCCCccCHHHHHH
Confidence 9999998 5678889999999999999962111 111234557888999999998764 4799999999999999999
Q ss_pred HHHhhhccccc
Q psy8199 637 MTSAIFQTFNE 647 (965)
Q Consensus 637 ~~~~l~~~~~~ 647 (965)
+++++.+++.+
T Consensus 411 ~~~~l~~~l~~ 421 (425)
T PRK07495 411 ALDILEASILE 421 (425)
T ss_pred HHHHHHHHHHH
Confidence 99998877654
|
|
| >PRK08117 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-60 Score=544.39 Aligned_cols=387 Identities=32% Similarity=0.508 Sum_probs=338.6
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhH
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGAS 325 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGse 325 (965)
+||||.|||+|||+.+|+|+++|||+||+|++|+++|++++.+.+...+.++...+|+++|++.+|.+.++|+|++||||
T Consensus 35 ~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~a~~~q~~~~~~~~~~~~~~~~~~~la~~L~~~~~~~~~~v~f~~SGse 114 (433)
T PRK08117 35 CYYYGVDGKEYLDFTSGIAVANVGHRHPKVVQAIKEQADKLMHGPSGVIYYESILKLAEELAEITPGGLDCFFFSNSGAE 114 (433)
T ss_pred eEEEeCCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCcHHH
Confidence 99999999999999999999999999999999999999987665444567899999999999999767889999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCC-cCccchhcccCCCeeEecCCCCCCCCCCCChhHHH
Q psy8199 326 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNI-QSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIA 404 (965)
Q Consensus 326 A~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (965)
||+.|+|+||.| ++|.+||+++++|||++.+++++++. ..++..+.+..+++.++|.|+..+.+.+.....+.
T Consensus 115 A~e~AlklAr~~------tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (433)
T PRK08117 115 AIEGALKLAKHV------TKRPYIISFTGCFHGRTLGALSVTTSKSKYRKYYQPLLGSVYQAPYPYCDRCPKGEDPEVCF 188 (433)
T ss_pred HHHHHHHHHHHh------cCCCeEEEECCCcCCcCHHHHhhcCCCccccccCCCCCCCcEEeCCCccccccccCchhHHH
Confidence 999999999998 58899999999999999999988763 44555666777788889988766555444445677
Q ss_pred HHHHHHHHHHHHh--CCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCC
Q psy8199 405 RCAIFDLEILLKK--NHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEI 482 (965)
Q Consensus 405 ~~d~~~le~~l~~--~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~ 482 (965)
.+|++++++++++ ..+++++||+|| +++++|.+.|+++||++|+++|++||+++|+||||+||||+|++++++++|+
T Consensus 189 ~~~~~~l~~~~~~~~~~~~~aavi~Ep-i~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~gr~G~~~~~~~~gv 267 (433)
T PRK08117 189 LECLRDLESLFKHQVTPEEVAAVIIEP-VLGEGGYIVPPKSFLKKLREICDRHGILLIFDEVQTGFGRTGEWFAAQTFGV 267 (433)
T ss_pred HHHHHHHHHHHHhccCCCcEEEEEECC-eeCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhccCccccchhHhhcCC
Confidence 7899999998874 356799999999 9999999999999999999999999999999999999999999988899999
Q ss_pred CcceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Q psy8199 483 WPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKIT 562 (965)
Q Consensus 483 ~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~ 562 (965)
.||++||||+++|| +|+|++++++++++.+.. ..+++||++||++|++++++|+.++++++.+++++++++++
T Consensus 268 ~pDi~t~sK~lg~G-~pigav~~~~~i~~~~~~------~~~~~T~~~np~~~aaa~a~L~~l~~~~l~~~~~~~g~~l~ 340 (433)
T PRK08117 268 VPDIMTIAKGIASG-LPLSAVVASKELMEQWPL------GSHGTTFGGNPVACAAALATLEVIKEEKLLDNANEMGAYAL 340 (433)
T ss_pred CCCEeehhhhccCC-CcceeEEEcHHHHhhccC------CCCCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 99999999999998 799999999999988754 35889999999999999999999988889999999999999
Q ss_pred HHHHcc-cCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecC---CEEEEeCCcccCHHHHHHHH
Q psy8199 563 KALTSL-ITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG---NTVYLMPPYILNKNEIQHMT 638 (965)
Q Consensus 563 ~~L~~l-~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~---~~lR~~p~~~~t~~~i~~~~ 638 (965)
++|+++ .+++.+.++++.|+|+++++...++.+.......+.+.++++||++.+.+ +++||+||++++++++++++
T Consensus 341 ~~L~~l~~~~~~~~~vrg~Gl~~gi~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~g~~~~~lRl~p~~~~t~~~i~~~~ 420 (433)
T PRK08117 341 ERLEVLKEKHPVIGDVRGIGLMIGIEIVDPDGEPDGDAVEKILDKCLEKGLLFYLCGNAGNVLRMIPPLTVTKEEIDEGL 420 (433)
T ss_pred HHHHHHHhcCCceeeeecCCcEEEEEEecCCCCcchHHHHHHHHHHHHCCCEEeecCCCCCEEEEeCCccCCHHHHHHHH
Confidence 999988 56777789999999999999722211122345567888999999987643 79999999999999999999
Q ss_pred Hhhhcccc
Q psy8199 639 SAIFQTFN 646 (965)
Q Consensus 639 ~~l~~~~~ 646 (965)
+++.+++.
T Consensus 421 ~~l~~~l~ 428 (433)
T PRK08117 421 DILDEALT 428 (433)
T ss_pred HHHHHHHH
Confidence 99976653
|
|
| >KOG1401|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-61 Score=494.38 Aligned_cols=369 Identities=32% Similarity=0.472 Sum_probs=313.5
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCC-CCCeEEEcCChh
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQY-KLGHCFYGSDGA 324 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~-~~~~v~~~~sGs 324 (965)
++++|.||++|+|+.++||+..+||+||++.+|+.+|+.++.|+.+..++.+ ..++++.|.+..+. +.++|+|+||||
T Consensus 48 ~kl~D~~g~EyiD~~ssw~~~~~Ghanpev~ral~~q~~k~~hs~~~~~t~e-av~l~~~l~~~~~~~~~~rvff~nsGT 126 (433)
T KOG1401|consen 48 SKLFDPDGKEYIDFTSSWAVTILGHANPEVARALAEQAKKLGHSSNGYFTLE-AVELEEVLSAVLGKGSAERVFFCNSGT 126 (433)
T ss_pred eeeecCCcceeeeeccceeccccCCCCHHHHHHHHHHHhhheeccCccccHH-HHHHHHHHHhcccCCCccEEEEecCCc
Confidence 9999999999999999999999999999999999999999999876666665 99999999987742 578999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHH
Q psy8199 325 SAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIA 404 (965)
Q Consensus 325 eA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (965)
||||.|||+||+++..+-..++.++|.|+++|||.|.++++++++..++-++.|..+++...++
T Consensus 127 eAne~ALK~Ark~~~~~~~~~~t~~Iaf~nsyHG~tlgals~~~~s~y~~~~~p~~p~v~~~~y---------------- 190 (433)
T KOG1401|consen 127 EANETALKFARKFTGKKHPEKKTKFIAFENSYHGRTLGALSVTGNSKYGLPFDPIAPDVVTAEY---------------- 190 (433)
T ss_pred HHHHHHHHHHHHhhcccCCccceeEEEEecCcCCcchhHHHhhcccccCCCCCCCCCceeeccc----------------
Confidence 9999999999998654444455679999999999999999999999888888888888777655
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCc
Q psy8199 405 RCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWP 484 (965)
Q Consensus 405 ~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~p 484 (965)
||..+|++.++.+.+.++|||+|| ++++||.++++++||..|+.+|+++|++||+|||||||||+|..|+++++++.|
T Consensus 191 -nd~t~l~k~~~~h~~~IaAVIvEP-iqGaGG~~p~~peFl~~L~k~C~~~~vl~I~DEV~tG~gR~g~~~a~e~~~~~P 268 (433)
T KOG1401|consen 191 -NDSTALEKLFESHKGEIAAVIVEP-IQGAGGIIPADPEFLIGLRKECDDNGVLLIFDEVQTGLGRLGYGWAQEYFGVTP 268 (433)
T ss_pred -CCHHHHHHHHHhCCCceEEEEEec-ccCCCCcccCCHHHHHHHHHHHhhcCceEEeehhhhCccccchHHHHHHhCcCC
Confidence 689999999999888899999999 999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Q psy8199 485 DFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKA 564 (965)
Q Consensus 485 Divt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~ 564 (965)
|+.|++|.|||| +|+||+++++++++.+..+ .++.|++||+|||++|+++..+|+.+.++++++++.+.++.|++.
T Consensus 269 DI~t~aK~L~gG-lPigA~~v~~kV~~~i~~~---~~l~hg~Tf~gnpLacsa~~~~l~~l~~~e~~k~vs~~~k~L~~~ 344 (433)
T KOG1401|consen 269 DITTVAKPLGGG-LPIGATGVRDKVAEMISPG---DHLYHGGTFSGNPLACSAGIKVLDELKDPETLKNVSKIGKELRKL 344 (433)
T ss_pred cceeehhhccCC-ceeEEEeehHHHHhhcCCC---CccccCcccCCChhhhhHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence 999999999999 8999999999999999863 348899999999999999999999999999999999999999999
Q ss_pred HHcc-cCCCc-eeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecC-----CEEEEeC--CcccC--HHH
Q psy8199 565 LTSL-ITHPK-IINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG-----NTVYLMP--PYILN--KNE 633 (965)
Q Consensus 565 L~~l-~~~~~-i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~-----~~lR~~p--~~~~t--~~~ 633 (965)
|.+. .+.+. +....++|+++++.+. ... . .+.+...+.|.+..+.+ ..+|+.| .++.. +|.
T Consensus 345 l~e~~~~~~~~i~g~~grgl~ig~~~~-~p~---~----~~~d~~~~~~ll~~~~~~~~~~~gv~i~P~~~l~~~~~~E~ 416 (433)
T KOG1401|consen 345 LDEYLKKTPNSICGGVGRGLVIGFEFE-GPV---Y----KFADAAREQGLLILTLGKGLLEEGVRIAPIYLLTVEHTPEV 416 (433)
T ss_pred HHHHhccCCCceeeeeeeEEEEEEEEe-ech---h----hhhhhhhhhhHHHHHHhcccccceEEEeccccccccCcHHH
Confidence 9776 55554 3344899999999886 211 1 11222222222222211 3577777 33433 777
Q ss_pred HHHHHHhhhccc
Q psy8199 634 IQHMTSAIFQTF 645 (965)
Q Consensus 634 i~~~~~~l~~~~ 645 (965)
++..++.+.+.+
T Consensus 417 i~~~l~i~~~~l 428 (433)
T KOG1401|consen 417 IQRLLTILEKVL 428 (433)
T ss_pred HHHHHHHHHHHH
Confidence 777777665543
|
|
| >PRK06777 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-60 Score=537.48 Aligned_cols=379 Identities=25% Similarity=0.420 Sum_probs=330.0
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCC-CCCeEEEcCChh
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQY-KLGHCFYGSDGA 324 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~-~~~~v~~~~sGs 324 (965)
+||||.|||+|||+.+|+|+.+|||+||+|++|+++|++++.+.....+.++...+++++|++..|. +.++++|++|||
T Consensus 32 ~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~~~~f~~sGs 111 (421)
T PRK06777 32 ATLWDVEGREYIDFAAGIAVLNTGHRHPKVVAAVRQQLDQFTHTAYQIVPYASYVTLAERINALAPIDGPAKTAFFTTGA 111 (421)
T ss_pred CEEEeCCCCEEEEcccCHHhhccCCCCHHHHHHHHHHHhhcccccccccCChHHHHHHHHHHHhCCCCCCceEEEeCCcH
Confidence 9999999999999999999999999999999999999999866554456789999999999999873 468999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCC-cCccchhcccCCCeeEecCCCCCCCCCCCChhHH
Q psy8199 325 SAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNI-QSFKEIYTSLLNKTYIITTPDSRNINKGNSANEI 403 (965)
Q Consensus 325 eA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (965)
||+|.|+|+||.| ++|.+|++++++|||+|.+++++++. ..++..+.++.+++.++|.|+..... .
T Consensus 112 eA~e~AlklAr~~------tgr~~ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-------~ 178 (421)
T PRK06777 112 EAVENAVKIARAY------TGRPGVIAFGGAFHGRTLLTMALTGKVAPYKVGFGPFPGSIFHALYPNELHGV-------S 178 (421)
T ss_pred HHHHHHHHHHHHh------hCCCeEEEEcCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCccccCc-------C
Confidence 9999999999998 58899999999999999999998875 34566666777777787777533211 1
Q ss_pred HHHHHHHHHHHHHh--CCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccC
Q psy8199 404 ARCAIFDLEILLKK--NHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAE 481 (965)
Q Consensus 404 ~~~d~~~le~~l~~--~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~ 481 (965)
...|++++++.+++ .++++++||+|| +++++|..+++++|+++|+++|++||+++|+|||||||||+|++|++++++
T Consensus 179 ~~~~~~~l~~~~~~~~~~~~iaavi~Ep-v~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~g~~~~~~~~~ 257 (421)
T PRK06777 179 VEEALSSVERLFKADIAPDQVAAILLEP-IQGEGGFNVAPPEFMSALRTLCDEHGILLIADEVQTGFARTGKLFAMEYYD 257 (421)
T ss_pred HHHHHHHHHHHHHhccCCCceEEEEECC-ccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCccCCchhhhhhcC
Confidence 23577888888864 357899999999 999999999999999999999999999999999999999999999999999
Q ss_pred CCcceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q psy8199 482 IWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKI 561 (965)
Q Consensus 482 ~~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l 561 (965)
+.||++||||+++|| +|+|++++++++++.+.. ..+++||++||++|++++++|+.++++++.+++++++++|
T Consensus 258 ~~pDiv~~sK~l~~G-~pigav~~~~~i~~~~~~------~~~~~T~~~~p~~~aaa~a~L~~~~~~~l~~~~~~~g~~l 330 (421)
T PRK06777 258 VKPDLITMAKSLGGG-MPISAVVGRAEVMDAPAP------GGLGGTYAGNPLAVAAALAVLDVIAEEKLCQRALILGAHL 330 (421)
T ss_pred CCCCEEeeehhhcCC-CceEEEEEcHHHHhccCC------CCCCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 999999999999988 799999999999988764 2478999999999999999999998889999999999999
Q ss_pred HHHHHcc-cCCCceeeeeceeEEEEEEEeecC-ccchhhHHHHHHHHHHHcCcEEeecC---CEEEEeCCcccCHHHHHH
Q psy8199 562 TKALTSL-ITHPKIINFRQKGMIWAFDVIIED-PEQIETFSKKFFVAALKNELLLRPIG---NTVYLMPPYILNKNEIQH 636 (965)
Q Consensus 562 ~~~L~~l-~~~~~i~~v~g~G~~~~i~~~~~~-~~~~~~~~~~~~~~l~~~Gi~~~~~~---~~lR~~p~~~~t~~~i~~ 636 (965)
+++|+++ .++|.+..++|.|+|+++++.... ..+...++..+...++++||++.|.+ +++||.||++++++++++
T Consensus 331 ~~~L~~l~~~~~~i~~vrg~G~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~~g~~lr~~ppl~i~~~~i~~ 410 (421)
T PRK06777 331 VEVLEKAKASCPAIVDIRARGSMVAVEFNDPQTGKPSPEFTRQYQRQALEEGLLLLSCGVHGNVIRFLYPLTIPDAQFSK 410 (421)
T ss_pred HHHHHHHHHhCCCeEEecCceEEEEEEEecCccCCccHHHHHHHHHHHHhCCeEEeecCCCCCEEEEeCCCCCCHHHHHH
Confidence 9999998 567888899999999999886211 11223456677888899999998853 799999999999999999
Q ss_pred HHHhhhccc
Q psy8199 637 MTSAIFQTF 645 (965)
Q Consensus 637 ~~~~l~~~~ 645 (965)
+++++.+.+
T Consensus 411 ~~~~l~~~l 419 (421)
T PRK06777 411 ALNILTRLL 419 (421)
T ss_pred HHHHHHHHH
Confidence 999887654
|
|
| >PRK08360 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-60 Score=535.18 Aligned_cols=387 Identities=27% Similarity=0.409 Sum_probs=335.9
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhH
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGAS 325 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGse 325 (965)
+||||.|||+|||+.+|+|+++|||+||+|++|+++|++++.+.+...+.++...+|+++|++.+|.+.++|+|++||||
T Consensus 33 ~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~la~~L~~~~p~~~~~v~f~~sGsE 112 (443)
T PRK08360 33 AKVWDIEGNEYIDFLSDAAVQNVGHNNPRVVKAIKEQTDKLIHYTPIYGFPVEPLLLAEKLIEIAPGDNPKVSFGLSGSD 112 (443)
T ss_pred eEEEECCCCEEEEccccHhhcccCCCCHHHHHHHHHHHHhccCccccccCcHHHHHHHHHHHHhCCCCCCEEEEcCCHHH
Confidence 99999999999999999999999999999999999999998776655567889999999999999866789999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCc-CccchhcccCCCeeEecCCCCCCCCCCCChhHHH
Q psy8199 326 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQ-SFKEIYTSLLNKTYIITTPDSRNINKGNSANEIA 404 (965)
Q Consensus 326 A~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (965)
||+.|+|+||.| ++|.+|+.+.++|||++.+++++++.. .++..+.+ .+++.++|+|+......+.....+.
T Consensus 113 Ave~AlklAr~~------tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (443)
T PRK08360 113 ANDGAIKFARAY------TKRRKILSYLRSYYGSTYGAMSLTGLDFPVRALVGE-LSDVHYIPYPDCYRCPFGKEPGSCK 185 (443)
T ss_pred HHHHHHHHHHHh------cCCCeEEEEeCCcCCcCHHHHHhcCCCcccccCCCC-CCCcEEEeCCccccccccCchhhhH
Confidence 999999999998 589999999999999999999988743 34445555 5677888888665544333334455
Q ss_pred HHHHHHHHHHHHh--CCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCC
Q psy8199 405 RCAIFDLEILLKK--NHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEI 482 (965)
Q Consensus 405 ~~d~~~le~~l~~--~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~ 482 (965)
.++++.++++++. .+++++||++|| +++++|.+.++++|+++|+++|++||+++|+||||+||||+|++++++++++
T Consensus 186 ~~~~~~~~~~l~~~~~~~~iAAvi~eP-~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~G~~~a~~~~~~ 264 (443)
T PRK08360 186 MECVEYIKEKFEGEVYAEGVAALFAEP-IQGDAGMIVPPEDYFKKLKKILDEHGILLVVDEVQSGLGRTGKWFAIEHFGV 264 (443)
T ss_pred HHHHHHHHHHHHhccCCCCeEEEEECC-ccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCccchhhhhcCC
Confidence 5778888888864 247899999999 9999999999999999999999999999999999999999999889888999
Q ss_pred CcceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Q psy8199 483 WPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKIT 562 (965)
Q Consensus 483 ~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~ 562 (965)
.||++||||++++| +|+|++++++++++.+.. ..+++|+++||++|++++++|+.++++++.+++++++++|+
T Consensus 265 ~pDiitlsK~l~~G-~pigav~~~~~i~~~~~~------~~~~~T~~~~p~~~aaa~a~l~~l~~~~l~~~~~~~g~~l~ 337 (443)
T PRK08360 265 EPDIITLGKPLGGG-LPISATIGRAEIMDSLPP------LAHAFTLSGNPVASAAALAVIEEIEEKNLLKRAEKLGNYTK 337 (443)
T ss_pred CCCEEEecccccCC-ceeEEEEEcHHHHhhhcC------CCCCCCCCcCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 99999999999988 899999999999998864 34788999999999999999999988899999999999999
Q ss_pred HHHHcc-cCCCceeeeeceeEEEEEEEeecCccc---hhhHHHHHHHHHHHcCcEEeec-CCEEEEeCCcccCHHHHHHH
Q psy8199 563 KALTSL-ITHPKIINFRQKGMIWAFDVIIEDPEQ---IETFSKKFFVAALKNELLLRPI-GNTVYLMPPYILNKNEIQHM 637 (965)
Q Consensus 563 ~~L~~l-~~~~~i~~v~g~G~~~~i~~~~~~~~~---~~~~~~~~~~~l~~~Gi~~~~~-~~~lR~~p~~~~t~~~i~~~ 637 (965)
++|+++ .+++.+.+++|.|+|+++++. .+..+ ....+..+...|+++|+++.+. ++.+||+||+++++++++++
T Consensus 338 ~~L~~l~~~~~~v~~vrg~Gl~~gie~~-~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~~lr~~P~l~~t~~~id~~ 416 (443)
T PRK08360 338 KRLEEMKKKHELIGDVRGIGLMIGVDLV-KDRETKERAYEEAAKVVWRAWELGLIVTFFSGNVLRIQPPLTIEKEVLDEG 416 (443)
T ss_pred HHHHHHHHhCCCeeeeeccceEEEEEEe-cCCcccCccHHHHHHHHHHHHHCCeEEeecCCCEEEEeCCCCCCHHHHHHH
Confidence 999988 567888899999999999996 22111 1223456888999999998764 58999999999999999999
Q ss_pred HHhhhcccccH
Q psy8199 638 TSAIFQTFNEL 648 (965)
Q Consensus 638 ~~~l~~~~~~~ 648 (965)
++++.+++..+
T Consensus 417 ~~~l~~~l~~~ 427 (443)
T PRK08360 417 LDILEEAIEDV 427 (443)
T ss_pred HHHHHHHHHHH
Confidence 99998766543
|
|
| >TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-60 Score=536.59 Aligned_cols=385 Identities=26% Similarity=0.397 Sum_probs=332.3
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCC-CCCeEEEcCChh
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQY-KLGHCFYGSDGA 324 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~-~~~~v~~~~sGs 324 (965)
+||||.|||+|||+.+|+|+.++||+||+|++|+++|++++.+.....+.++...+++++|++..|. +.++|+|++|||
T Consensus 25 ~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~a~~~ql~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~~v~f~~sGs 104 (420)
T TIGR00700 25 AILEDVDGNRLIDFASGIAVLNIGHSHPRVVDAVRTQVAEFTHTCFMVTPYEGYVALAEKLNRIAPGSGPKKSVFFNSGA 104 (420)
T ss_pred eEEEeCCCCEEEECccCHHhccCCCCCHHHHHHHHHHHHhccCccccccCChHHHHHHHHHHHhCCCCCCCEEEEeCCcH
Confidence 9999999999999999999999999999999999999998766554456788899999999999873 457999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCc-CccchhcccCCCeeEecCCCCCCCCCCCChhHH
Q psy8199 325 SAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQ-SFKEIYTSLLNKTYIITTPDSRNINKGNSANEI 403 (965)
Q Consensus 325 eA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (965)
||+|.|+|+||.| ++|.+||+++++|||+|.+++++++.. .++..+.++.+++.++|.|+.++...+.....+
T Consensus 105 eA~e~AlklAr~~------tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (420)
T TIGR00700 105 EAVENAVKIARSY------TGRPGVVAFDHGFHGRTNMTMALTAKVMPYKSGFGPFAPEVYRAPLPYPYRDGLLDKQLST 178 (420)
T ss_pred HHHHHHHHHHHHh------cCCCcEEEECCCcCCCcHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccchhH
Confidence 9999999999998 588899999999999999999988753 456667777778888888765543322212221
Q ss_pred HHHHHHHHHHHHH--hCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccC
Q psy8199 404 ARCAIFDLEILLK--KNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAE 481 (965)
Q Consensus 404 ~~~d~~~le~~l~--~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~ 481 (965)
..+++++++++. ..++++||||+|| +++++|.++++++|+++|+++|++||+++|+|||||||||+|+++++++++
T Consensus 179 -~~~~~~~~~~~~~~~~~~~iAavi~Ep-i~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tg~gr~g~~~a~~~~~ 256 (420)
T TIGR00700 179 -DGELAAARAIFVIDVGANNVAALVIEP-VQGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQTGFARTGAMFACEHEG 256 (420)
T ss_pred -HHHHHHHHHHHHhhcCCCcEEEEEECC-ccCCCCCccCCHHHHHHHHHHHHHcCCEEEEEecccCCcccchhHHHhhcC
Confidence 235788888874 3467899999999 999999999999999999999999999999999999999999999999999
Q ss_pred CCcceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q psy8199 482 IWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKI 561 (965)
Q Consensus 482 ~~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l 561 (965)
+.||++||||++++| +|+|++++++++++.+.. ..+++||++||++|++++++|++++++++.++++++++++
T Consensus 257 ~~pDi~~lsK~l~~G-~pig~v~~~~~i~~~~~~------~~~~~T~~~~pl~~aaa~a~l~~l~~~~~~~~~~~~g~~l 329 (420)
T TIGR00700 257 PEPDLITTAKSLADG-LPLSGVTGRAEIMDAPAP------GGLGGTYAGNPLACAAALAVLAIIESEGLIERARQIGRLV 329 (420)
T ss_pred CCCCEEEeeccccCC-cceEEEEecHHHHhhcCC------CCcCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 999999999999988 799999999999988754 3578999999999999999999998889999999999999
Q ss_pred HHHHHcc-cCCCceeeeeceeEEEEEEEeecC-ccchhhHHHHHHHHHHHcCcEEeec---CCEEEEeCCcccCHHHHHH
Q psy8199 562 TKALTSL-ITHPKIINFRQKGMIWAFDVIIED-PEQIETFSKKFFVAALKNELLLRPI---GNTVYLMPPYILNKNEIQH 636 (965)
Q Consensus 562 ~~~L~~l-~~~~~i~~v~g~G~~~~i~~~~~~-~~~~~~~~~~~~~~l~~~Gi~~~~~---~~~lR~~p~~~~t~~~i~~ 636 (965)
+++|+++ .++|.+..+++.|+|+++++...+ ..+...++..+.+.|.++||++.|. ++++||+||++++++++++
T Consensus 330 ~~~L~~l~~~~~~~~~vrg~G~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~p~~~f~~~lRl~p~l~~~~~~l~~ 409 (420)
T TIGR00700 330 TDRLTTLKAVDPRIGDVRGLGAMIAVELVDPGTTEPDAGLAERIATAAHAAGLLLLTCGMFGNIIRFLPPLTIGDELLSE 409 (420)
T ss_pred HHHHHHHHhhCCCEEEeeccceEEEEEEecCCCCCccHHHHHHHHHHHHHCCeEEeccCCCCCEEEEECCCCcCHHHHHH
Confidence 9999988 567888899999999999985211 1112345667888889999999885 4799999999999999999
Q ss_pred HHHhhhccc
Q psy8199 637 MTSAIFQTF 645 (965)
Q Consensus 637 ~~~~l~~~~ 645 (965)
+++++.+.+
T Consensus 410 ~~~~l~~~l 418 (420)
T TIGR00700 410 GLDILCAIL 418 (420)
T ss_pred HHHHHHHHh
Confidence 999887654
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-60 Score=532.30 Aligned_cols=376 Identities=23% Similarity=0.342 Sum_probs=310.7
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHH--HhhccccccCCCCcHHHHHHHHHHHh----hcCCCCCeEEE
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQ--LNKLEHVMLSNLTHKPVIKLSEKLSS----LTQYKLGHCFY 319 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~--~~~~~~~~~~~~~~~~~~~la~~l~~----~~~~~~~~v~~ 319 (965)
+||||.|||+|||+.+|+|+.++||+||+|++|+++| ...+.+. +.+.++...+++++|++ .+|.+.++|+|
T Consensus 50 ~~l~D~dG~~ylD~~sg~~~~~lGh~~p~i~~Ai~~q~~~~~l~~~--~~~~~~~~~~la~~l~~~l~~~~p~~~~~v~f 127 (464)
T TIGR00699 50 NYLVDVDGNRLLDLYSQISSIPIGYNNPALLKAAQSPEMATTLINR--PALGNFPSKDWAKILKEGILKVAPKGQDQVWT 127 (464)
T ss_pred CEEEeCCCCEEEEccCCHhhhcCCCCCHHHHHHHHHHHHHHhhccc--ccCCcHHHHHHHHHHHHhHHhhCCCCcCEEEE
Confidence 9999999999999999999999999999999999985 3333332 34677888889998754 67767789999
Q ss_pred cCChhHHHHHHHHHHHHHHHhcCC-------------------CC--ceEEEEEcCCccCCccccccccCCcCccchhcc
Q psy8199 320 GSDGASAVEVALKMSFHYWYNKGF-------------------LN--KKKFICLQNSYHGETLGALAVTNIQSFKEIYTS 378 (965)
Q Consensus 320 ~~sGseA~~~Al~~a~~~~~~~g~-------------------~~--~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~ 378 (965)
++|||||||+|+|+|+.|+..+++ ++ |.+||+++++|||+|.+++++++.+.+.... +
T Consensus 128 ~~SGsEAvE~AlKlAr~~~~~~~r~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~syHG~t~~als~t~~~~~~~~~-~ 206 (464)
T TIGR00699 128 GMSGSDANELAFKAAFMYYRSKQRGYQADFSEEENESCMDNQAPGSPDLSILSFKGAFHGRLFGSLSTTRSKPIHKLD-I 206 (464)
T ss_pred eCCcHHHHHHHHHHHHHHHHhcCCCcccccccccccccccccccCCcCCEEEEECCCcCCccHHHHHhcCCccccccC-C
Confidence 999999999999999998754321 22 3389999999999999999999865444332 2
Q ss_pred cCCCeeEecCCCCCCCCCC---CChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhc
Q psy8199 379 LLNKTYIITTPDSRNINKG---NSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNY 455 (965)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~ 455 (965)
...++.++|.|... .+.. ...+.+..+++++++++++++.+++||||+|| +++++|.++|+++||++|+++|++|
T Consensus 207 ~~~~~~~~p~p~~~-~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~iAAvI~EP-v~g~~G~~~~~~~yl~~lr~lc~~~ 284 (464)
T TIGR00699 207 PAFDWPQAPFPSLK-YPLEEHVKENAKEEQRCLEEVEDLIKKWHKPVAAIIVEP-IQSEGGDNHASPDFFRKLRDITKKH 284 (464)
T ss_pred CCCCceecCCCCcc-cccccccccchhHHHHHHHHHHHHHHhcCCcEEEEEEeC-CCCCCCCcCCCHHHHHHHHHHHHHc
Confidence 23456677777521 1111 11234567889999999987667899999999 9999999999999999999999999
Q ss_pred CCeEEEeccccCCCcccccccccccCCC--cceeeeccccC-CCcccceeeeecHHHHHhhhccCCcccccccCCCCCCH
Q psy8199 456 NIHLIADEIAVGCGRTGKFFACEHAEIW--PDFLCLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNP 532 (965)
Q Consensus 456 g~llI~DEv~tg~gr~G~~~~~~~~~~~--pDivt~sK~l~-gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~ 532 (965)
|++||+|||+|||||+|.+|+++++|+. ||++||||+|+ ||+ + +++ +. +.. ...+.|++||++||
T Consensus 285 g~lLI~DEV~tGfGrtG~~fa~e~~gv~~~PDi~t~gK~lg~gG~-~----~~~-~~---~~~---~~~~~~~~T~~gnp 352 (464)
T TIGR00699 285 NVAFIVDEVQTGVGATGKFWAHEHWNLDDPPDMVTFSKKFQTAGY-F----FHD-PA---FRP---NKPYRQFNTWMGDP 352 (464)
T ss_pred CCEEEEeeeeeCCCCCcchhHHHhcCCCCCCCEEEehhhhccCCc-c----ccc-hh---ccC---CCCcccccCCCCCH
Confidence 9999999999999999999999999997 99999999996 563 3 222 22 211 12356899999999
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcc-cCCC-ceeeee--ceeEEEEEEEeecCccchhhHHHHHHHHHH
Q psy8199 533 LACCAALATLEIFNKDNILQRISQDMKKITKALTSL-ITHP-KIINFR--QKGMIWAFDVIIEDPEQIETFSKKFFVAAL 608 (965)
Q Consensus 533 ~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l-~~~~-~i~~v~--g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~ 608 (965)
++|++++++|++++++++.+++++++++|+++|+++ .++| .|.+|| |.|+|+++++. + ...+..+.+.++
T Consensus 353 ~~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~i~~vRg~G~Glm~gie~~--~----~~~~~~i~~~~~ 426 (464)
T TIGR00699 353 SRALILREIIQEIKRKDLLENVAHVGDYLYTGLEDLQKKYPEFIQNLRGKGRGTFIAWDTP--D----EAKRDKLLKKAR 426 (464)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCceeeecccCeEEEEEEecC--C----HHHHHHHHHHHH
Confidence 999999999999999999999999999999999998 5688 688999 99999999984 2 223567889999
Q ss_pred HcCcEEeecC-CEEEEeCCcccCHHHHHHHHHhhhcc
Q psy8199 609 KNELLLRPIG-NTVYLMPPYILNKNEIQHMTSAIFQT 644 (965)
Q Consensus 609 ~~Gi~~~~~~-~~lR~~p~~~~t~~~i~~~~~~l~~~ 644 (965)
++|+++.+.+ +.+||.||+++++++++++++++.++
T Consensus 427 ~~Gvl~~~~g~~~ir~~Ppl~it~~eid~~~~~l~~~ 463 (464)
T TIGR00699 427 NNGVNIGGCGVKAIRLRPMLVFQKHHADIFLEIISKI 463 (464)
T ss_pred HCCcEEecCCCCeEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 9999998876 79999999999999999999988754
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-59 Score=532.39 Aligned_cols=386 Identities=38% Similarity=0.699 Sum_probs=338.8
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhH
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGAS 325 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGse 325 (965)
+|+||.|||+||||.+++|+.+|||+||+|++|+++|++++.+......+++...+++++|++.+|.++++|+|++||||
T Consensus 37 ~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~f~~sGse 116 (427)
T TIGR00508 37 VELTLDDGRRLIDGMSSWWAAIHGYNHPRLNAAAQKQIDKMSHVMFGGFTHKPAIELCQKLVKMTPNALDCVFLADSGSV 116 (427)
T ss_pred eEEEeCCCCEEEEccchHHHhcCCCCCHHHHHHHHHHHHhcCCccccccCCHHHHHHHHHHHhhCCCCCCEEEEeCCcHH
Confidence 89999999999999999999999999999999999999987665545568899999999999999877899999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCC-cCccchhcccCCCeeEecCCCCCCCCCCCChhHHH
Q psy8199 326 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNI-QSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIA 404 (965)
Q Consensus 326 A~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (965)
|++.|+|+|+.|++.+|.++|.+||+++++|||.+.+++++++. ..++..+.+..++..++|.|..... ..+.
T Consensus 117 A~e~AlklAr~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~------~~~~ 190 (427)
T TIGR00508 117 AVEVALKMALQYWQAKGEKNRQKFLTIRSGYHGDTFGAMSVCDPENSMHSLYKGYLPEQIFAPAPQNRFD------EEWN 190 (427)
T ss_pred HHHHHHHHHHHHHHhhCCCCccEEEEEcCCcCCccHhhhcccCCcccccccccccCCCCeEcCCCCcccc------chhH
Confidence 99999999999988788888999999999999999999998874 2344455555566666666643211 1234
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEEcccc-ccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCC
Q psy8199 405 RCAIFDLEILLKKNHNKIAAIIIEPLV-QCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIW 483 (965)
Q Consensus 405 ~~d~~~le~~l~~~~~~~aaii~ep~v-~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~ 483 (965)
.+|++++++++.+..+++++||+|| + ++++|.++++.+||++|+++|++||+++|+|||+|||||+|++|+++++++.
T Consensus 191 ~~~~~~l~~~l~~~~~~vaavivEP-v~~g~gG~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~Gr~G~~~~~~~~~v~ 269 (427)
T TIGR00508 191 EEAITPLAKLMELHSDEIAAVILEP-IVQGAGGMRFYHPTYLKRVQALCKQYDILLIADEIATGFGRTGKLFACEHAGVV 269 (427)
T ss_pred HHHHHHHHHHHHhcCCcEEEEEEec-hhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCccchhhhcCCC
Confidence 5688999999976667899999999 6 9999999999999999999999999999999999999999999999999999
Q ss_pred cceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Q psy8199 484 PDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITK 563 (965)
Q Consensus 484 pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~ 563 (965)
||++|+||+++||++|++++++++++++.+... ....+.|++||++||++|++++++|++++++++.+++++++++|++
T Consensus 270 pDi~~~gK~l~gG~~p~~a~~~~~~~~~~~~~~-~~~~~~~~~T~~g~p~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~ 348 (427)
T TIGR00508 270 PDILCVGKALTGGYMTLSATVTTDKVAQTISSG-EAGCFMHGPTFMGNPLACAVAEASLAILLEGEWQKQVSAIENQLKR 348 (427)
T ss_pred CCEEEechhhhcCcccceEEEEcHHHHHHHhcC-CCCccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 999999999999988999999999999988642 1234568999999999999999999999888999999999999999
Q ss_pred HHHcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecCCEEEEeCCcccCHHHHHHHHHhhhc
Q psy8199 564 ALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQ 643 (965)
Q Consensus 564 ~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~lR~~p~~~~t~~~i~~~~~~l~~ 643 (965)
+|+++..++.+..++|.|+|+.+++. .+ .....+.+.|+++||++.+.++.+||+||+++++++|+++++++.+
T Consensus 349 ~L~~l~~~~~i~~vrg~G~~~~i~~~-~~-----~~~~~~~~~l~~~Gv~~~~~~~~l~~~ppl~~t~~~id~~~~~l~~ 422 (427)
T TIGR00508 349 ELSPLRKNPVVKDVRVLGAIGVVEMY-KP-----VNVEELQKKFVEQGVWIRPFGKLIYVMPPYIITTEQLQKLTAALIE 422 (427)
T ss_pred HHHHhhcCCCEEeEeccccEEEEEEC-Cc-----cCHHHHHHHHHHCCeEEEecCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 99998667778899999999999996 21 1134688899999999998888999999999999999999999887
Q ss_pred cc
Q psy8199 644 TF 645 (965)
Q Consensus 644 ~~ 645 (965)
++
T Consensus 423 ~l 424 (427)
T TIGR00508 423 AL 424 (427)
T ss_pred HH
Confidence 65
|
All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae. |
| >PRK04612 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-60 Score=530.50 Aligned_cols=369 Identities=24% Similarity=0.402 Sum_probs=326.9
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhH
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGAS 325 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGse 325 (965)
+||||.|||+|||+.+|+|+.++||+||+|++|+++|++++.+.+. .+.+++..+++++|++..| ..++|+|++||||
T Consensus 32 ~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~-~~~~~~~~~la~~L~~~~~-~~~~v~f~~sGse 109 (408)
T PRK04612 32 SRVWDDQGREYLDLAAGIAVCGLGHNDPDLVAALTEQAGKLWHTSN-VFYSAPPLKLAEELVTASR-FAEKVFLCNSGTE 109 (408)
T ss_pred CEEEECCCCEEEEcCccHhhccCCCCCHHHHHHHHHHHHhcccccc-ccCCHHHHHHHHHHHhhCC-CCCEEEEcCchHH
Confidence 9999999999999999999999999999999999999998766542 4678899999999999886 3489999999999
Q ss_pred HHHHHHHHHHHHHHhcCC-CCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHH
Q psy8199 326 AVEVALKMSFHYWYNKGF-LNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIA 404 (965)
Q Consensus 326 A~~~Al~~a~~~~~~~g~-~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (965)
|||.|+|+||.|++.+|. ++|.+||+++++|||++.+++++++.+.++..+.+..+++.++|++
T Consensus 110 A~e~AlklAr~~~~~~g~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~--------------- 174 (408)
T PRK04612 110 ANEAAIKLVRKWASSQGRPADKRVIVTFRGSFHGRTLAAVTATAQPKYQEGYEPLPGGFRYVDFN--------------- 174 (408)
T ss_pred HHHHHHHHHHHHHHhhCCCCCCcEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCCceEcCCC---------------
Confidence 999999999999877775 4577899999999999999999998877776666666666666553
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCc
Q psy8199 405 RCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWP 484 (965)
Q Consensus 405 ~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~p 484 (965)
|+++++++++ .+++++|++|| +++++|++.++++|+++|+++|++||+++|+|||||||||+|.+|+.+.+++.|
T Consensus 175 --d~~~l~~~~~--~~~~aavi~eP-~~~~gg~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~a~~~~~~~p 249 (408)
T PRK04612 175 --DVEALEAAMA--GGDVAAVMLEP-IQGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQCGMGRTGTLFAHWQEQVTP 249 (408)
T ss_pred --CHHHHHHhhC--CCCEEEEEECC-ccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCchhhhhhcCCCC
Confidence 6788888885 46799999999 999999999999999999999999999999999999999999988888889999
Q ss_pred ceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Q psy8199 485 DFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKA 564 (965)
Q Consensus 485 Divt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~ 564 (965)
|++||||+++|| +|+|++++++++++.+.. ..+++||++||++|++++++|++++++++.+++++++++|+++
T Consensus 250 di~t~~K~l~~G-~piga~~~~~~~~~~~~~------~~~~~t~~~~p~~~aaa~a~L~~~~~~~l~~~~~~~g~~l~~~ 322 (408)
T PRK04612 250 DIVTLAKALGGG-FPIGAMLAGPKVAETMQF------GAHGTTFGGNPLAAAVARVALRKLASPQIAANVARQSAALRAG 322 (408)
T ss_pred CEEEEcchhcCC-CceEEEEECHHHHhhhcC------CCcCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 999999999998 899999999999887754 3578999999999999999999999899999999999999999
Q ss_pred HHcc-cCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecC-CEEEEeCCcccCHHHHHHHHHhhh
Q psy8199 565 LTSL-ITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG-NTVYLMPPYILNKNEIQHMTSAIF 642 (965)
Q Consensus 565 L~~l-~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~-~~lR~~p~~~~t~~~i~~~~~~l~ 642 (965)
|+++ .+++.+.+++|.|+|+++++. .+ ....+..+.+.|.++|+++.+.+ +.+||.||+++++++++++++++.
T Consensus 323 l~~l~~~~~~i~~vrg~Gl~~~i~~~-~~---~~~~a~~i~~~l~~~Gvlv~~~g~~~lRl~Ppl~it~eeid~~l~~l~ 398 (408)
T PRK04612 323 LEALNAEFGVFAQVRGRGLMLGAVLA-PA---HAGQAGAILDLAAEHGLLLLQAGPDVLRFVPALNLTDAELADGLARLR 398 (408)
T ss_pred HHHHHhhCCCeeeeeccceEEEEEec-Cc---hhhHHHHHHHHHHHCCeEEeeCCCCEEEEcCCccCCHHHHHHHHHHHH
Confidence 9998 557888899999999999986 21 11234568888999999998876 899999999999999999999988
Q ss_pred ccccc
Q psy8199 643 QTFNE 647 (965)
Q Consensus 643 ~~~~~ 647 (965)
+++.+
T Consensus 399 ~~l~~ 403 (408)
T PRK04612 399 LALAD 403 (408)
T ss_pred HHHHH
Confidence 76643
|
|
| >COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-60 Score=506.97 Aligned_cols=403 Identities=22% Similarity=0.288 Sum_probs=331.2
Q ss_pred ccccccccccccccccccccCcccccccccCCCce-----eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhh
Q psy8199 211 SLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDI-----SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNK 285 (965)
Q Consensus 211 ~~~~~~~~Lha~~l~f~~p~~~~~~~~~~~~p~~~-----~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~ 285 (965)
+..+.+++...++-+.+.|.+..+... ..|+.+ +||||+|||+|||++.+|++..|||+||.|.+|+++|+++
T Consensus 7 S~~l~~~A~~~~pGGvnspvra~~~v~--~~P~fi~~g~Ga~l~DvDGn~YIDy~~~~Gp~ilGH~~p~V~~Av~~~l~~ 84 (432)
T COG0001 7 SEALFERAKKVIPGGVNSPVRAFKSVG--GYPIFIERGKGAYLTDVDGNEYIDYVLGWGPLILGHAHPAVVEAVQEQLER 84 (432)
T ss_pred hHHHHHHHhhhCCCCCCccccccCCCC--CCCeeEEeccCCeEEeCCCCEeeehhccCcccccCCCCHHHHHHHHHHHHh
Confidence 333445577777888888887777653 367766 9999999999999999999999999999999999999999
Q ss_pred ccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCcccccc
Q psy8199 286 LEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALA 365 (965)
Q Consensus 286 ~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~ 365 (965)
+.. .+.+++...++++.+.+++| ..++|.|+||||||+..|||+||.| |+|++||.|+|+|||+++..+.
T Consensus 85 G~~---fg~Pte~Ei~~Aell~~~~p-~~e~vrfvnSGTEAtmsAiRlARa~------TgR~kIikF~G~YHG~~D~~lv 154 (432)
T COG0001 85 GLS---FGAPTELEVELAELLIERVP-SIEKVRFVNSGTEATMSAIRLARAY------TGRDKIIKFEGCYHGHSDSLLV 154 (432)
T ss_pred cCC---CCCCCHHHHHHHHHHHHhcC-cccEEEEecchhHHHHHHHHHHHHh------hCCCeEEEEcCCCCCCccHHHh
Confidence 743 46789999999999999998 6799999999999999999999999 6999999999999999877765
Q ss_pred ccCCcCccchhcccCCCeeEecCCCCCCCCCCCCh--hHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChH
Q psy8199 366 VTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSA--NEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSI 443 (965)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~ 443 (965)
-.+... . ....|.+.+.+.+... ..+++||++++++++++.++++||||+|| +.++.|.+.|.++
T Consensus 155 ~agsg~-~-----------t~g~p~s~Gvp~~~a~~ti~~~yND~~al~~~~~~~g~~IAaVIvEP-v~gn~g~i~p~~~ 221 (432)
T COG0001 155 KAGSGA-A-----------TLGSPSSPGVPADVAKHTLVLPYNDLEALEEAFEEYGDDIAAVIVEP-VAGNMGVVPPEPG 221 (432)
T ss_pred hcCcCc-c-----------cCCCCCCCCCChhhhccEEEecCCCHHHHHHHHHHcCCcEEEEEecc-ccCCCCCCCCCHH
Confidence 433110 0 0001222222211111 13566999999999998889999999999 9999999999999
Q ss_pred HHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcceeeeccccCCCcccceeeeecHHHHHhhhccCCccccc
Q psy8199 444 YLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFL 523 (965)
Q Consensus 444 ~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~ 523 (965)
||++|+++|++||++||+|||+||| |.+..++++++|++||+.||||.+||| +|+|++.+++++|+.+.. ..++.
T Consensus 222 Fl~~Lr~lt~e~G~lLI~DEViTGF-R~~~gGaq~~~gi~PDlttlGKiIGGG-lP~ga~gGr~eiM~~~~p---~g~vy 296 (432)
T COG0001 222 FLEGLRELTEEHGALLIFDEVITGF-RVALGGAQGYYGVEPDLTTLGKIIGGG-LPIGAFGGRAEIMEQLAP---LGPVY 296 (432)
T ss_pred HHHHHHHHHHHcCcEEEEecchhhc-ccCCcccccccCcCcchhhhhhhhcCC-cceeeeccHHHHHhhhCC---CCCcc
Confidence 9999999999999999999999999 888788999999999999999999999 799999999999998865 34577
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHcccCCCcee-eeeceeEEEEEEEeecCccc------
Q psy8199 524 HSHSYSGNPLACCAALATLEIFNK-DNILQRISQDMKKITKALTSLITHPKII-NFRQKGMIWAFDVIIEDPEQ------ 595 (965)
Q Consensus 524 ~~~t~~~~~~~~aaa~a~L~~~~~-~~~~~~~~~~~~~l~~~L~~l~~~~~i~-~v~g~G~~~~i~~~~~~~~~------ 595 (965)
+.+|++|||++++|+.++|+.+.+ +..++++.+++++|+++|+++....++. .+...|.|+.+.+...+...
T Consensus 297 qaGT~sgnplamaAG~atl~~l~~~~~~y~~l~~~~~~L~~gl~~~~~~~g~~~~v~~~gsm~~i~F~~~~~~n~~da~~ 376 (432)
T COG0001 297 QAGTLSGNPLAMAAGLATLEELMTEEGVYERLDALGERLAEGLRAAAERHGIPLTVNRVGSMFGIFFTEEGVRNYADAKR 376 (432)
T ss_pred ccCCCCCcHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeecceEEEEecCCCCCCHHHHHh
Confidence 899999999999999999999987 4589999999999999999884333343 78889999999887211111
Q ss_pred -hhhHHHHHHHHHHHcCcEEeecC-CEEEEeCCcccCHHHHHHHHHhhhccc
Q psy8199 596 -IETFSKKFFVAALKNELLLRPIG-NTVYLMPPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 596 -~~~~~~~~~~~l~~~Gi~~~~~~-~~lR~~p~~~~t~~~i~~~~~~l~~~~ 645 (965)
..+....+.+.|+++||++.|.. +..-++ ..+++++|++.++++.++.
T Consensus 377 sd~~~~~~~~~~~l~~GV~l~ps~~ea~flS--~ahte~di~~~~~a~~~~~ 426 (432)
T COG0001 377 SDVERFAKFFHHLLNRGVYLAPSQFEAGFLS--TAHTEEDIDRTLEAADEAF 426 (432)
T ss_pred hchHHHHHHHHHHHhCCcccCCccccceeee--cccCHHHHHHHHHHHHHHH
Confidence 01112245669999999999976 445566 6899999999999887544
|
|
| >PRK08297 L-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-59 Score=532.74 Aligned_cols=387 Identities=21% Similarity=0.350 Sum_probs=317.3
Q ss_pred eEEEec-CCcccccccccchhccCCCCCHHHHH--HHHHHHhhccc--cccCCCCcHHHHHHHHHHHhhc-CCCCCeEEE
Q psy8199 246 SKLITF-SGKRYLDAISSWWVNLFGHSNSYINK--ALKNQLNKLEH--VMLSNLTHKPVIKLSEKLSSLT-QYKLGHCFY 319 (965)
Q Consensus 246 ~~~~d~-dG~~ylD~~~~~~~~~lGh~~p~v~~--av~~~~~~~~~--~~~~~~~~~~~~~la~~l~~~~-~~~~~~v~~ 319 (965)
+||||. |||+|||+.+|+|+++|||+||+|++ |+++|++++.+ .+...+.++...+++++|++.. |.+.++|+|
T Consensus 36 ~~l~D~~dG~~ylD~~~g~~~~~lGh~~p~v~~~~ai~~ql~~l~~~~~~~~~~~~~~~~~la~~l~~~~~p~~~~~v~f 115 (443)
T PRK08297 36 SYLVDARTGRRYLDMFTFFASSALGMNHPALADDPEFRAELGRAALNKPSNSDVYTVEMARFVDTFARVLGDPELPHLFF 115 (443)
T ss_pred CEEEECCCCCEeeecccCHhhhcCCCCChHHhhHHHHHHHHHHhhhhccccCCcCCHHHHHHHHHHHhhcCCCCCCEEEE
Confidence 999995 99999999999999999999999999 99999988642 2334578899999999999988 557889999
Q ss_pred cCChhHHHHHHHHHHHHHHHh----cCC--CCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCC
Q psy8199 320 GSDGASAVEVALKMSFHYWYN----KGF--LNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRN 393 (965)
Q Consensus 320 ~~sGseA~~~Al~~a~~~~~~----~g~--~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (965)
++|||||||.|+|+||+|+.. +|. ++|.+||+++++|||+|.+++++++...+...+.+.. +..++|.|....
T Consensus 116 ~~SGsEAve~AlKlAr~~~~~~~~~~g~~~~~r~kii~~~~~yHG~t~~als~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 194 (443)
T PRK08297 116 VDGGALAVENALKVAFDWKSRKNEARGIDPALGTKVLHLRGAFHGRSGYTLSLTNTDPRKTARFPKF-DWPRIDNPKLRF 194 (443)
T ss_pred eCchHHHHHHHHHHHHHHhhccccccCCCCCCCceEEEECCCcCCcchhhhhhcCCcccccccCCCC-CccccCCCCCCC
Confidence 999999999999999998642 464 4578999999999999999999987543222222221 222233332211
Q ss_pred CCCC---CChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCc
Q psy8199 394 INKG---NSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGR 470 (965)
Q Consensus 394 ~~~~---~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr 470 (965)
...+ .....+..+|++++++++.++++++++||+|| +++++|.++||++||++|+++|++||+++|+|||||||||
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~iAavI~EP-i~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tGfGR 273 (443)
T PRK08297 195 PLPGEDLEEVEALEAEALAQARAAFERHPHDIACFIAEP-IQGEGGDNHFRPEFFAAMRELCDEHDALLIFDEVQTGVGL 273 (443)
T ss_pred CCcccccchhhHHHHHHHHHHHHHHHhCCCcEEEEEEcc-ccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCc
Confidence 1001 11345677899999999987778999999999 9999999999999999999999999999999999999999
Q ss_pred ccccccccccCCCcceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccH
Q psy8199 471 TGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNI 550 (965)
Q Consensus 471 ~G~~~~~~~~~~~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~ 550 (965)
+|++|+++++|+.||++||||++ |+|++++.+++.+.+... ......|++||++||++|++|+++|++++++++
T Consensus 274 tG~~~a~~~~gv~PDiv~~gK~l-----~~~a~l~~~~i~~~~~~~-~~~~~~~~~T~~gnpl~~aaa~a~L~~l~~~~l 347 (443)
T PRK08297 274 TGTAWAYQQLGVRPDIVAFGKKT-----QVCGIMAGRRVDEVEDNV-FAVSSRINSTWGGNLVDMVRARRILEVIEEDGL 347 (443)
T ss_pred cchHHHHHhcCCCCCEEEecccc-----cccceecchHHHHhhhhh-ccCccccCCCCCccHHHHHHHHHHHHHHHhcCH
Confidence 99999999999999999999997 345666666654432110 001124889999999999999999999998899
Q ss_pred HHHHHHHHHHHHHHHHcc-cCCCcee-eeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecC-CEEEEeCCc
Q psy8199 551 LQRISQDMKKITKALTSL-ITHPKII-NFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG-NTVYLMPPY 627 (965)
Q Consensus 551 ~~~~~~~~~~l~~~L~~l-~~~~~i~-~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~-~~lR~~p~~ 627 (965)
.+++++++++|+++|+++ .++|.+. +|+|.|+|+++++. + ......+.+.|+++||++.|.+ +.+||+||+
T Consensus 348 ~~~~~~~g~~l~~~L~~l~~~~~~~~~~vrg~G~~~~i~~~--~----~~~~~~~~~~l~~~Gvl~~~~~~~~lr~~P~l 421 (443)
T PRK08297 348 VENAARQGEYLLARLEELAAEFPAVVSNVRGRGLMCAFDLP--T----TADRDEVIRRLWEEGVLVLPCGERSIRFRPAL 421 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCcceeeeccceEEEEEec--C----HHHHHHHHHHHHHCCEEEecCCCCeEEEECCc
Confidence 999999999999999998 5677665 99999999999995 2 2234568889999999998865 789999999
Q ss_pred ccCHHHHHHHHHhhhcccc
Q psy8199 628 ILNKNEIQHMTSAIFQTFN 646 (965)
Q Consensus 628 ~~t~~~i~~~~~~l~~~~~ 646 (965)
++++++++++++++.+++.
T Consensus 422 ~~t~~eid~~l~~l~~~l~ 440 (443)
T PRK08297 422 TVTTEEIDAAIDALRRALP 440 (443)
T ss_pred cCCHHHHHHHHHHHHHHHH
Confidence 9999999999999876653
|
|
| >PRK06918 4-aminobutyrate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-59 Score=535.40 Aligned_cols=387 Identities=27% Similarity=0.452 Sum_probs=334.9
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCC-CeEEEcCChh
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKL-GHCFYGSDGA 324 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~-~~v~~~~sGs 324 (965)
+||||.|||+|||+.+|+|+.+|||+||+|++|+++|++++.+.+...+.++...+++++|++.+|... ++|+|++|||
T Consensus 46 ~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~~la~~L~~~~p~~~~~~v~f~~sGs 125 (451)
T PRK06918 46 ALVTDVDGNQYIDFAGAIGTINVGHSHPKVKEALHKQVDQYIHTGFNVMMYEPYIELAEKLAALAPGSFDKKVLFLNSGA 125 (451)
T ss_pred cEEEeCCCCEEEEcCCchhhcCCCCCCHHHHHHHHHHHHhccCccccccccHHHHHHHHHHHHhCCCCCCCEEEEcCCcH
Confidence 999999999999999999999999999999999999999876655445678999999999999998555 6999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCC-cCccchhcccCCCeeEecCCCCCCCCCCCChhHH
Q psy8199 325 SAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNI-QSFKEIYTSLLNKTYIITTPDSRNINKGNSANEI 403 (965)
Q Consensus 325 eA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (965)
||||.|+|+||.| ++|.+||+++++|||+|.+++++++. ..++..+.++.+++.++|+|+.++.+.+.....+
T Consensus 126 eA~e~AlklAr~~------tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (451)
T PRK06918 126 EAVENAVKIARKY------TKRQGIISFSRGFHGRTLMTMTMTSKVKPYKFGFGPFAPEVYKAPFPYEYRRPEGLTEEQY 199 (451)
T ss_pred HHHHHHHHHHHHH------hCCCcEEEECCCcCccchhhhhhcCCCccccccCCCCCCCcEEcCCCccccccccCchHHH
Confidence 9999999999998 58899999999999999999998874 3466667777778888888876655544434444
Q ss_pred HHHHHHHHHHHHHh--CCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccC
Q psy8199 404 ARCAIFDLEILLKK--NHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAE 481 (965)
Q Consensus 404 ~~~d~~~le~~l~~--~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~ 481 (965)
....++.+++.+.. .++++||||+|| +++++|.++|+++|+++|+++|++||+++|+|||||||||+|.++++++++
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~iAavi~EP-i~g~gG~~~~~~~~l~~l~~l~~~~gillI~DEV~tg~gr~g~~~a~~~~~ 278 (451)
T PRK06918 200 DDFMIEEFKNFFISEVAPETIAAVVMEP-VQGEGGFIVPSKKFVQEVRNICSEHGILFVADEIQTGFARTGKYFAIEHFD 278 (451)
T ss_pred HHHHHHHHHHHHHhhcCCCceEEEEECc-ccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCcCccCceehhHhcC
Confidence 44456666666532 356899999999 999999999999999999999999999999999999999999988999999
Q ss_pred CCcceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q psy8199 482 IWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKI 561 (965)
Q Consensus 482 ~~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l 561 (965)
+.||+++|||++++| +|+|++++++++++.+.. ..+++||++||++|++++++|++++++++.++++++++++
T Consensus 279 v~pDi~t~sK~l~~G-~pig~v~~~~~i~~~~~~------~~~~~T~~g~~l~~aaa~a~l~~i~~~~~~~~~~~~g~~l 351 (451)
T PRK06918 279 VVPDLITVSKSLGAG-VPISGVIGRKEIMDESAP------GELGGTYAGSPLGCAAALAVLDIIEKENLNDRAIELGKVV 351 (451)
T ss_pred CCCCEEeeehhhcCC-CccEEEEEcHHHHhccCC------CCcCcCCCcCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence 999999999999988 899999999999988754 3478999999999999999999998889999999999999
Q ss_pred HHHHHcc-cCCCceeeeeceeEEEEEEEeecCc---cchhhHHHHHHHHHHHcCcEEeecC---CEEEEeCCcccCHHHH
Q psy8199 562 TKALTSL-ITHPKIINFRQKGMIWAFDVIIEDP---EQIETFSKKFFVAALKNELLLRPIG---NTVYLMPPYILNKNEI 634 (965)
Q Consensus 562 ~~~L~~l-~~~~~i~~v~g~G~~~~i~~~~~~~---~~~~~~~~~~~~~l~~~Gi~~~~~~---~~lR~~p~~~~t~~~i 634 (965)
+++|+++ .+++.+..++|.|+|+++++. .+. .+....+..+.+.|.++||++.|.+ +++||+||++++++++
T Consensus 352 ~~~l~~l~~~~~~~~~vrg~G~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~Gvlv~~~~~~~~~lrl~p~l~~t~~~i 430 (451)
T PRK06918 352 MNRFEEMKNKYNCIGDVRGLGAMCAFELV-QDRKTKEPDKTLTANICKEANKRGLLLLSAGTYGNVIRVLMPLVITDEQL 430 (451)
T ss_pred HHHHHHHHhhCCCceeeccceeEEEEEEc-cCCCcCCCcHHHHHHHHHHHHHCCeEEeecCCCCCEEEEECCCccCHHHH
Confidence 9999988 467777899999999999985 221 1123346678888999999998854 7999999999999999
Q ss_pred HHHHHhhhccccc
Q psy8199 635 QHMTSAIFQTFNE 647 (965)
Q Consensus 635 ~~~~~~l~~~~~~ 647 (965)
+++++++.+.+..
T Consensus 431 d~~l~~l~~~l~~ 443 (451)
T PRK06918 431 EEGLTIIEESLQA 443 (451)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998876643
|
|
| >PRK09792 4-aminobutyrate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-59 Score=531.09 Aligned_cols=379 Identities=26% Similarity=0.390 Sum_probs=330.1
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCC-CCCeEEEcCChh
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQY-KLGHCFYGSDGA 324 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~-~~~~v~~~~sGs 324 (965)
+||||.|||+|||+.+|+|+.++||+||+|++|+++|++++.+.+...+.+++..+++++|++..|. +.++++|++|||
T Consensus 32 ~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~~~~f~~sGs 111 (421)
T PRK09792 32 ATLKDVEGNEYIDFAAGIAVLNTGHRHPDLVAAVEQQLQQFTHTAYQIVPYESYVTLAEKINALAPVSGQAKTAFFTTGA 111 (421)
T ss_pred cEEEeCCCCEEEEccCchhhhcCCCCCHHHHHHHHHHHHhccCcccCccCCHHHHHHHHHHHHhCCCCCCceEEEeCChH
Confidence 9999999999999999999999999999999999999998766554556899999999999998873 357999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCC-cCccchhcccCCCeeEecCCCCCCCCCCCChhHH
Q psy8199 325 SAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNI-QSFKEIYTSLLNKTYIITTPDSRNINKGNSANEI 403 (965)
Q Consensus 325 eA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (965)
|||+.|+|+||.+ ++|.+|++++++|||+|.+++++++. ..++..+.++..++.++|+|...... .
T Consensus 112 eA~e~AlklAr~~------tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~-------~ 178 (421)
T PRK09792 112 EAVENAVKIARAH------TGRPGVIAFSGGFHGRTYMTMALTGKVAPYKIGFGPFPGSVYHVPYPSDLHGI-------S 178 (421)
T ss_pred HHHHHHHHHHHHh------cCCCeEEEECCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCcccccc-------c
Confidence 9999999999988 68889999999999999999999875 34666677776777888887543211 1
Q ss_pred HHHHHHHHHHHHHhC--CCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccC
Q psy8199 404 ARCAIFDLEILLKKN--HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAE 481 (965)
Q Consensus 404 ~~~d~~~le~~l~~~--~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~ 481 (965)
..+|++++++++++. .+++++|++|| +++++|..++|++|+++|+++|++||+++|+|||+|||||+|++|++++++
T Consensus 179 ~~~~~~~l~~~~~~~~~~~~iaavi~EP-vq~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~~~a~~~~~ 257 (421)
T PRK09792 179 TQDSLDAIERLFKSDIEAKQVAAIIFEP-VQGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQSGFARTGKLFAMDHYA 257 (421)
T ss_pred HHHHHHHHHHHHHhccCCCceEEEEEcc-ccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCchhHHHhcC
Confidence 346888999988742 46799999999 899999999999999999999999999999999999999999999999999
Q ss_pred CCcceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q psy8199 482 IWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKI 561 (965)
Q Consensus 482 ~~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l 561 (965)
+.||++||||+|+|| +|+|++++++++++.+.. ..+++||++||++|++++++|++++++++.++++++++++
T Consensus 258 ~~pDi~t~gK~l~~G-~pigav~~~~~i~~~~~~------~~~~~T~~gnpl~~aaa~a~l~~l~~~~~~~~~~~~g~~l 330 (421)
T PRK09792 258 DKPDLMTMAKSLAGG-MPLSGVVGNANIMDAPAP------GGLGGTYAGNPLAVAAAHAVLNIIDKESLCERANQLGQRL 330 (421)
T ss_pred CCCcEEEeehhhcCC-CceEEEEEcHHHHhccCC------CCcCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 999999999999999 799999999999988754 2478999999999999999999999888999999999999
Q ss_pred HHHHHcc-cCCCceeeeeceeEEEEEEEeecCc-cchhhHHHHHHHHHHHcCcEEeec---CCEEEEeCCcccCHHHHHH
Q psy8199 562 TKALTSL-ITHPKIINFRQKGMIWAFDVIIEDP-EQIETFSKKFFVAALKNELLLRPI---GNTVYLMPPYILNKNEIQH 636 (965)
Q Consensus 562 ~~~L~~l-~~~~~i~~v~g~G~~~~i~~~~~~~-~~~~~~~~~~~~~l~~~Gi~~~~~---~~~lR~~p~~~~t~~~i~~ 636 (965)
++.|+++ .++|.+..++|.|+|+++++...+. .+.......+.+.|+++||++.+. ++.+||.||++++++++++
T Consensus 331 ~~~l~~l~~~~p~v~~vrG~Gl~~~ie~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~g~~~~~irl~P~l~i~~~ei~~ 410 (421)
T PRK09792 331 KNTLIDAKESVPAIAAVRGLGSMIAAEFNDPQTGEPSAAIAQKIQQRALAQGLLLLTCGAYGNVIRFLYPLTIPDAQFDA 410 (421)
T ss_pred HHHHHHHHHhCCCcceecccceEEEEEecCCccCCcchHHHHHHHHHHHHCCcEEeecCCCCCEEEEeCCCcCCHHHHHH
Confidence 9999998 5678888999999999999962111 111134567889999999998753 4799999999999999999
Q ss_pred HHHhhhccc
Q psy8199 637 MTSAIFQTF 645 (965)
Q Consensus 637 ~~~~l~~~~ 645 (965)
+++++.+++
T Consensus 411 ~~~~l~~~l 419 (421)
T PRK09792 411 AMKILQDAL 419 (421)
T ss_pred HHHHHHHHH
Confidence 999887654
|
|
| >PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-59 Score=515.54 Aligned_cols=343 Identities=29% Similarity=0.494 Sum_probs=305.7
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhH
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGAS 325 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGse 325 (965)
+||||.|||+|||+.+|+|+.++||+||+|++|+++|++++.+.+ ..+.++...+++++|++.. +.++++|++||||
T Consensus 16 ~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~~~-~~~~~~~~~~la~~l~~~~--~~~~v~~~~SGse 92 (364)
T PRK04013 16 IYVWDSQGRRYLDLIAGIGVNVLGHNHPEWVEEMSEQLEKLVVAG-PMFEHEEKEEMLEELSKWV--NYEYVYMGNSGTE 92 (364)
T ss_pred CEEEECCCCEEEEcccChhhccCCCCCHHHHHHHHHHHHhcCCcc-CCcCCHHHHHHHHHHHhhc--CCCEEEEeCchHH
Confidence 899999999999999999999999999999999999999976554 3578999999999999987 4689999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHH
Q psy8199 326 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIAR 405 (965)
Q Consensus 326 A~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (965)
|++.|+|+|+.+ ++|++||+++++|||++.+++++++.+.++..+.+..+++.++|++
T Consensus 93 A~e~Alklar~~------~gr~~Ii~~~~syHG~t~~~ls~~~~~~~~~~~~p~~~~~~~~~~~---------------- 150 (364)
T PRK04013 93 AVEAALKFARLY------TGRKEIIAMTNAFHGRTMGALSATWKPKYREDFEPLVPGFKHIPFN---------------- 150 (364)
T ss_pred HHHHHHHHHHHH------hCCCEEEEECCccccCchhhccCCCCcccccCCCCCCCCcEEecCC----------------
Confidence 999999999998 5789999999999999999999999887777777777777777664
Q ss_pred HHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcc
Q psy8199 406 CAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPD 485 (965)
Q Consensus 406 ~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pD 485 (965)
|++++++.+. ++++||++|| +++++|.++++++|+++|+++|++||+++|+|||+||| |+|++|+++++++.||
T Consensus 151 -d~~~l~~~i~---~~~aAvivEp-i~g~gG~~~~~~~yl~~lr~lc~~~gillI~DEv~tG~-RtG~~~a~~~~gv~PD 224 (364)
T PRK04013 151 -DVEAAKEAIT---KETAAVIFEP-IQGEGGIVPAKEEFVKTLRDLTEDVGALLIADEVQSGL-RTGKFLAIEHYKVEPD 224 (364)
T ss_pred -CHHHHHHHhc---CCcEEEEEcC-CcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcC-CCCchhHHHhcCCCCC
Confidence 5677887774 5799999999 99999999999999999999999999999999999999 9999999999999999
Q ss_pred eeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Q psy8199 486 FLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKAL 565 (965)
Q Consensus 486 ivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L 565 (965)
++|+||+|+|| +|+|+++.++++. . ..|++||++||++|++++++|++++++++.+++++. |
T Consensus 225 iv~~gK~lggG-~P~~a~~~~~~~~----~------~~~~~T~~gnp~~~aaa~a~l~~i~~~~l~~~~~~~-------l 286 (364)
T PRK04013 225 IVTMGKGIGNG-VPVSLTLTNFDVE----R------GKHGSTFGGNPLACKAVAVTLRILRRERLVEKAGEK-------F 286 (364)
T ss_pred EEEecccccCC-ceeEEEEeccccc----C------CCcCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHH-------H
Confidence 99999999999 7999999987751 1 248899999999999999999999999999998874 2
Q ss_pred HcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecC-CEEEEeCCcccCHHHHHHHHHhhhcc
Q psy8199 566 TSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG-NTVYLMPPYILNKNEIQHMTSAIFQT 644 (965)
Q Consensus 566 ~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~-~~lR~~p~~~~t~~~i~~~~~~l~~~ 644 (965)
.++. .+.+.+|||.|+|+++++. .+ ...+.+.++++|+++.+.+ +++||.||+++++++++++++++.++
T Consensus 287 ~~l~-~~~v~~vRG~Gl~~gve~~-~~-------~~~i~~~~~~~Gll~~~~g~~vlr~~Ppl~it~~~i~~~~~~l~~~ 357 (364)
T PRK04013 287 IEIK-GERVVTTRGRGLMIGIVLK-KP-------VGKYVEELQNRGYLVHTAGQRVIRLLPPLIISKDTMEEAKSAIEGV 357 (364)
T ss_pred HHhc-cCcceeeeeCcEEEEEEeC-Cc-------HHHHHHHHHhCCcEEeeCCCCEEEEeCCcccCHHHHHHHHHHHHHH
Confidence 2332 2678899999999999996 11 3467888999999998876 79999999999999999999998876
Q ss_pred cc
Q psy8199 645 FN 646 (965)
Q Consensus 645 ~~ 646 (965)
+.
T Consensus 358 l~ 359 (364)
T PRK04013 358 IN 359 (364)
T ss_pred HH
Confidence 63
|
|
| >PRK06148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-59 Score=576.16 Aligned_cols=382 Identities=22% Similarity=0.341 Sum_probs=326.1
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhH
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGAS 325 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGse 325 (965)
+||||.|||+|||+.+|. .++||+||+|++|+++|++++... ..+.++...+++++|++.+|.+.++|+|++||||
T Consensus 616 ~~l~D~dG~~ylD~~~g~--~~lGH~hp~v~~Ai~~q~~~l~~~--~~~~~~~~~~lAe~L~~~~p~~~~~v~f~nSGsE 691 (1013)
T PRK06148 616 VWLIDNRGRAYLDCFNNV--CHVGHAHPRVVAAAARQAARLNTN--TRYLHDAIVAYAERLTATLPDGLTVAFFVNSGSE 691 (1013)
T ss_pred cEEEECCCCEEEEcccCh--hhcCCCCHHHHHHHHHHHhhcCCc--CCcCCHHHHHHHHHHHHhCCCCcCEEEEeCCcHH
Confidence 999999999999999984 789999999999999999986332 3578999999999999999877789999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhccc-CCCeeEecCCCCCCCCCCCChhHHH
Q psy8199 326 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSL-LNKTYIITTPDSRNINKGNSANEIA 404 (965)
Q Consensus 326 A~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (965)
||+.|||+||.| ++|.+||+++++|||+|.+++++++.. ++..+.+. .+++..++.|+.++.+.+....++.
T Consensus 692 A~e~AlklAr~~------tGr~~ii~~~~~YHG~t~~a~s~s~~~-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 764 (1013)
T PRK06148 692 ANSLALRLARAH------TGQRDAIVLDHAYHGTTTELIDLSPYK-FNRKGGKGRPDHVEVAEVPDSYRGPERWPDAEHG 764 (1013)
T ss_pred HHHHHHHHHHHh------cCCCeEEEEcCCccCCCcchhhcCchh-hcccCCCCCCCCceEcCCCCccccCCCCChhhhH
Confidence 999999999998 689999999999999999999998743 33333322 4556666777655554433333333
Q ss_pred HHHHHHHHHHHH---hCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccc-ccccccc
Q psy8199 405 RCAIFDLEILLK---KNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK-FFACEHA 480 (965)
Q Consensus 405 ~~d~~~le~~l~---~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~-~~~~~~~ 480 (965)
..+.+++++.++ ..++++||||+|| +++++|.++||++||++|+++|++||+++|+|||||||||+|+ +|+++++
T Consensus 765 ~~~~~~l~~~i~~~~~~~~~iAAvI~EP-v~g~gG~i~pp~~yl~~lr~lc~~~g~llI~DEVqtGfGRtG~~~~a~e~~ 843 (1013)
T PRK06148 765 RRFAESVAEQIAAMAAKGRGPAFFIAES-IPSVAGQIFLPEGYLREVYAMVRAAGGVCIADEVQVGFGRVGSHWWAFETQ 843 (1013)
T ss_pred HHHHHHHHHHHHhhhccCCceEEEEEcC-CcCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEecccCCCCCCCcchhhhhc
Confidence 444556666654 3356799999999 9999999999999999999999999999999999999999997 8999999
Q ss_pred CCCcceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Q psy8199 481 EIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKK 560 (965)
Q Consensus 481 ~~~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~ 560 (965)
|+.||++|+||+|||| +|+|++++++++++.+..+ ..|++||+|||++|+|++++|++++++++.+++++++++
T Consensus 844 gv~PDivt~gK~lggG-~Plgav~~~~ei~~~~~~g-----~~~~~Tf~gnpla~aaa~a~L~~i~~e~l~~~~~~~G~~ 917 (1013)
T PRK06148 844 GVVPDIVTMGKPIGNG-HPMGAVVTTREIADSFDNG-----MEYFNTFGGNPVSCAIGLAVLDIIEDEDLQRNALEIGNY 917 (1013)
T ss_pred CCCcceeeecccccCC-cceEEEEEcHHHHhhccCC-----CccccCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 9999999999999999 6999999999999988541 237799999999999999999999999999999999999
Q ss_pred HHHHHHcc-cCCCceeeeeceeEEEEEEEeecCcc---chhhHHHHHHHHHHHcCcEEeecC---CEEEEeCCcccCHHH
Q psy8199 561 ITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDPE---QIETFSKKFFVAALKNELLLRPIG---NTVYLMPPYILNKNE 633 (965)
Q Consensus 561 l~~~L~~l-~~~~~i~~v~g~G~~~~i~~~~~~~~---~~~~~~~~~~~~l~~~Gi~~~~~~---~~lR~~p~~~~t~~~ 633 (965)
|+++|+++ .++|.+.+|+|.|+|+++++. .+.. +....+..+.+.|+++||++.+.+ +++||.||+++++++
T Consensus 918 l~~~L~~l~~~~~~i~~VrG~Gl~~gvel~-~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~g~~~~vlr~~Ppl~it~~~ 996 (1013)
T PRK06148 918 LLAGLRELQDRFDIIGDVRGMGLFLGIELV-TDRKTKAPATAIARYVKNGARERGILIGTEGPHDNVLKIRPPLIFSRAD 996 (1013)
T ss_pred HHHHHHHHHHhCCCceEEeeeceEEEEEec-CCccccCccHHHHHHHHHHHHhCCeEEeccCCCCCEEEEeCCccCCHHH
Confidence 99999998 678888999999999999996 3221 122345678899999999998644 899999999999999
Q ss_pred HHHHHHhhhcccc
Q psy8199 634 IQHMTSAIFQTFN 646 (965)
Q Consensus 634 i~~~~~~l~~~~~ 646 (965)
++++++++.+++.
T Consensus 997 id~~l~~l~~~l~ 1009 (1013)
T PRK06148 997 ADHLLEVLDDVLA 1009 (1013)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887654
|
|
| >TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-59 Score=526.81 Aligned_cols=370 Identities=28% Similarity=0.428 Sum_probs=319.9
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhc--CCCCC-eEEE-cC
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLT--QYKLG-HCFY-GS 321 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~--~~~~~-~v~~-~~ 321 (965)
+||||.|||+|||+.+|+|+.+|||+||+|++|+++|+++..+.+...+.++...+|+++|++.. |.+.. +++| ++
T Consensus 27 ~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~~~~~~~~~~~~~~lae~l~~~~~~~~~~~~~~~f~~~ 106 (412)
T TIGR02407 27 STLWDEDGKEYIDFFAGAGALNYGHNNPKLKQALIDYLADDGIIHSLDMATEAKREFLETFNEIILKPRGLDYKVQFPGP 106 (412)
T ss_pred CEEEeCCCCEEEEcccchhhccCCCCCHHHHHHHHHHHhhccceeccccCcHHHHHHHHHHHHhccCccCCCceEEEeCC
Confidence 99999999999999999999999999999999999999876554444567899999999999985 32233 5666 59
Q ss_pred ChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChh
Q psy8199 322 DGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSAN 401 (965)
Q Consensus 322 sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (965)
|||||||.|+|+||.| ++|.+||+++++|||+|.+++++++.+.++..+.+..+++.++|+|+....
T Consensus 107 sGseA~e~AlklAr~~------tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~p~~~~~~~------- 173 (412)
T TIGR02407 107 TGTNAVESALKLARKV------TGRSNVVSFTNAFHGMTLGSLSVTGNRFKRQGAGVPLSNVSRMPYDGYLGG------- 173 (412)
T ss_pred CchHHHHHHHHHHhhh------cCCCeEEEECCCcCCchHHHHHhcCCcccccCCCCCCCCeEECCCCCcccc-------
Confidence 9999999999999998 588999999999999999999999877777777766677778777643211
Q ss_pred HHHHHHHHHHHHHHHhCC---CcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccccccccc
Q psy8199 402 EIARCAIFDLEILLKKNH---NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACE 478 (965)
Q Consensus 402 ~~~~~d~~~le~~l~~~~---~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~ 478 (965)
..++++.+++++.++. +++++||+|| +++++|.++||++||++|+++|++||+++|+|||||||||+|++|+++
T Consensus 174 --~~~~~~~l~~~~~~~~~~~~~~aavi~Ep-i~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GRtG~~~a~~ 250 (412)
T TIGR02407 174 --DVDTIAYFEKLLEDSSSGVDLPAAVILET-VQGEGGINVASDEWLQRLEKLCRRHDILLIVDDIQAGCGRTGTFFSFE 250 (412)
T ss_pred --chhHHHHHHHHHHhccCCCCceEEEEecc-ccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhHHhc
Confidence 1357888999887542 5789999999 999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcceeeeccccCC-CcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHH-HhcccHHHHHHH
Q psy8199 479 HAEIWPDFLCLSKGITG-GYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEI-FNKDNILQRISQ 556 (965)
Q Consensus 479 ~~~~~pDivt~sK~l~g-G~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~-~~~~~~~~~~~~ 556 (965)
++++.||+++|||+|+| | +|+|++++++++ +.+.. ..|++||++||++|+++.++|+. ++++++.+++++
T Consensus 251 ~~~v~PDi~~~~K~lg~~G-~pigav~~~~~~-~~~~~------~~~~~T~~gnpl~~aaa~a~l~~~i~~~~l~~~~~~ 322 (412)
T TIGR02407 251 PAGIEPDIVCLSKSISGYG-LPLALTLIKPEL-DVWKP------GEHNGTFRGNNLAFVTATAALEYYWSDDAFEKAVQR 322 (412)
T ss_pred ccCCCCCEEEechhccCCc-cceeEEEEchhh-hccCC------CccCCCCCccHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 99999999999999999 7 799999999886 55532 35889999999999999999995 777889999999
Q ss_pred HHHHHHHHHHcc-cCCC-ceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec---CCEEEEeCCcccCH
Q psy8199 557 DMKKITKALTSL-ITHP-KIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI---GNTVYLMPPYILNK 631 (965)
Q Consensus 557 ~~~~l~~~L~~l-~~~~-~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~---~~~lR~~p~~~~t~ 631 (965)
++++++++|+.+ .+++ .+..+++.|+|+++++. + ...+..+...|+++||++.+. ++.|||+||+++++
T Consensus 323 ~g~~l~~~l~~l~~~~~~~~~~vrg~Gl~~~l~l~--~----~~~~~~~~~~~~~~Gv~v~~~~~~~~~lr~~p~l~~t~ 396 (412)
T TIGR02407 323 KSEIIQERLDRIVAEYPELIKQVRGRGLMQGIECG--D----GDLAGKIAKAAFENGLIIETSGPNDEVIKLLPPLTIDE 396 (412)
T ss_pred HHHHHHHHHHHHHhhCCCceEeeecceeEEEEEec--C----hHHHHHHHHHHHHCCCEEeccCCCCCEEEEECCCCCCH
Confidence 999999999987 5566 46799999999999996 2 223557888999999999764 37999999999999
Q ss_pred HHHHHHHHhhhccc
Q psy8199 632 NEIQHMTSAIFQTF 645 (965)
Q Consensus 632 ~~i~~~~~~l~~~~ 645 (965)
++++++++++.+++
T Consensus 397 ~~i~~~~~~l~~~l 410 (412)
T TIGR02407 397 ETLQQGLDILEQAV 410 (412)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999987655
|
Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance. |
| >PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-59 Score=527.55 Aligned_cols=373 Identities=28% Similarity=0.406 Sum_probs=320.8
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhc--CCCCC-eEEE-cC
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLT--QYKLG-HCFY-GS 321 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~--~~~~~-~v~~-~~ 321 (965)
+||||.|||+|||+.+|+|+++|||+||+|.+|+++|+++..+.+...+.++...+|+++|++.+ |.+.+ +++| ++
T Consensus 31 ~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~~~~~~~~~~~~~~lae~l~~~~~~~~~~~~~~~f~~~ 110 (425)
T PRK09264 31 SWLYDEDGKEYIDFFAGAGALNYGHNNPVLKQALIDYLQRDGITHGLDMHTTAKREFLETFEETILKPRGLDYKVQFTGP 110 (425)
T ss_pred CEEEeCCCCEeeecccchhhccCCCCCHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHhhcCCcCCCceEEEeCC
Confidence 99999999999999999999999999999999999999876555444567889999999999975 32344 6766 58
Q ss_pred ChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChh
Q psy8199 322 DGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSAN 401 (965)
Q Consensus 322 sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (965)
|||||||.|+|+||.| ++|.+||+++++|||+|.+++++++++.++..+.+..+++.++|+|.+...
T Consensus 111 sGseA~e~AlklAr~~------tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~p~~~~~~~------- 177 (425)
T PRK09264 111 TGTNAVEAALKLARKV------TGRTNIVAFTNGFHGMTLGSLAVTGNSHKRQGAGVPLNNVTRMPYDGYFGG------- 177 (425)
T ss_pred CHHHHHHHHHHHHHHh------cCCCeEEEECCccCCccHHHHHhcCCcccccCCCCCCCCeEEeCCCCcccc-------
Confidence 9999999999999998 688999999999999999999999877777667776677888888753221
Q ss_pred HHHHHHHHHHHHHHHhCC---CcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccccccccc
Q psy8199 402 EIARCAIFDLEILLKKNH---NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACE 478 (965)
Q Consensus 402 ~~~~~d~~~le~~l~~~~---~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~ 478 (965)
..+|+++++++++++. +++++||+|| +++++|+++++++||++|+++|++||+++|+|||||||||+|++|+++
T Consensus 178 --~~~~~~~l~~~l~~~~~~~~~~aavi~Ep-v~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~~~~~~ 254 (425)
T PRK09264 178 --DVDTLAYLEKLLEDSSSGVDLPAAVIVET-VQGEGGINVASAEWLQRLAKLCRKHDILLIVDDIQAGCGRTGTFFSFE 254 (425)
T ss_pred --chhHHHHHHHHHHhccCCCCceEEEEEec-ccCCCCCcCCCHHHHHHHHHHHHHcCcEEEEechhhCCccccHHHHHh
Confidence 2368889999997542 5799999999 999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHH-HHHhcccHHHHHHHH
Q psy8199 479 HAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATL-EIFNKDNILQRISQD 557 (965)
Q Consensus 479 ~~~~~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L-~~~~~~~~~~~~~~~ 557 (965)
++++.||++||||+|++|++|+|++++++++ ..+.. ..+++||++||++|++++++| ++++++++.++++++
T Consensus 255 ~~~v~PDi~t~~K~l~~~G~pigav~~~~~i-~~~~~------~~~~~T~~gnp~~~aaa~a~l~~~~~~~~l~~~~~~~ 327 (425)
T PRK09264 255 RAGITPDIVTLSKSISGYGLPMALVLIKPEL-DVWKP------GEHNGTFRGNNLAFVTATAALEEYWSDDAFEKEVKAK 327 (425)
T ss_pred hcCCCCCEEEeccccCCCccceEEEEEchhh-hccCC------CccCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 9999999999999999933799999999887 34432 347899999999999999999 666777899999999
Q ss_pred HHHHHHHHHcc-cCCCc-eeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecC---CEEEEeCCcccCHH
Q psy8199 558 MKKITKALTSL-ITHPK-IINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG---NTVYLMPPYILNKN 632 (965)
Q Consensus 558 ~~~l~~~L~~l-~~~~~-i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~---~~lR~~p~~~~t~~ 632 (965)
+++|+++|+++ .++|. +..+++.|+|+++++. + ......+.+.++++||++.+.+ +.|||+||++++++
T Consensus 328 g~~l~~~l~~l~~~~~~~~~~vrg~Gl~~~i~l~--~----~~~~~~l~~~~~~~Gv~~~~~~~~~~~lr~~p~l~~t~~ 401 (425)
T PRK09264 328 GELVRERLEEIAAKYPGLGAEVRGRGMMQGIDFG--D----GELAGKIAAEAFENGLIIETSGPEDEVVKLLPPLTIDEE 401 (425)
T ss_pred HHHHHHHHHHHHHhCCCceecceecccEEEEEec--C----hHHHHHHHHHHHHCCCEEeccCCCCCEEEEeCCCCCCHH
Confidence 99999999887 45664 3689999999999985 2 2335578889999999998754 79999999999999
Q ss_pred HHHHHHHhhhccccc
Q psy8199 633 EIQHMTSAIFQTFNE 647 (965)
Q Consensus 633 ~i~~~~~~l~~~~~~ 647 (965)
+++++++++.+++..
T Consensus 402 ei~~~~~~l~~~l~~ 416 (425)
T PRK09264 402 ELEEGLDILEEAVAE 416 (425)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999876543
|
|
| >TIGR03246 arg_catab_astC succinylornithine transaminase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-58 Score=521.80 Aligned_cols=365 Identities=29% Similarity=0.468 Sum_probs=323.8
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhH
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGAS 325 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGse 325 (965)
+|+||.|||+|||+.+|+|+.+|||+||+|++|+++|++++.+.. .++.+++..+|+++|++..+ .++++|++||+|
T Consensus 27 ~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~a~~~~~~~~~~~~-~~~~~~~~~~la~~L~~~~~--~~~~~f~~SGse 103 (397)
T TIGR03246 27 SRVWDQQGKEYIDFAGGIAVNALGHAHPELVKALIEQADKLWHIG-NGYTNEPVLRLAKKLVDATF--ADKVFFCNSGAE 103 (397)
T ss_pred CEEEeCCCCEEEECCcCHhhccCCCCCHHHHHHHHHHHHhccccc-CccCCHHHHHHHHHHHhhCC--CCEEEEeCCcHH
Confidence 999999999999999999999999999999999999999864433 34678889999999999884 579999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHH
Q psy8199 326 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIAR 405 (965)
Q Consensus 326 A~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (965)
||+.|+|+||.|++.++.++|.+||+++++|||++.+++++++.+.++..+.+..+++.++|.
T Consensus 104 A~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 166 (397)
T TIGR03246 104 ANEAALKLARRYALDKHGADKSEIVAFKNSFHGRTLFTVSVGGQPKYSQGFAPLPGGIKHAPY----------------- 166 (397)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCceEEeCC-----------------
Confidence 999999999999776655788999999999999999999999876666666776667666665
Q ss_pred HHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcc
Q psy8199 406 CAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPD 485 (965)
Q Consensus 406 ~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pD 485 (965)
+|++++++++. +++++|++|| +++++|.++|+++||++|+++|++||+++|+|||||||||+|.+++++++++.||
T Consensus 167 ~d~~~l~~~l~---~~~aavi~Ep-i~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~Gr~G~~~a~~~~gv~pD 242 (397)
T TIGR03246 167 NDLAAAKALIS---DKTCAVIVEP-IQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVTPD 242 (397)
T ss_pred CCHHHHHHHhc---cCeEEEEEec-ccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcCCccccchhhhhcCCCCC
Confidence 47888998884 4699999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Q psy8199 486 FLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKAL 565 (965)
Q Consensus 486 ivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L 565 (965)
++|+||+++|| +|+|++++++++++.+.. ..+++||++||++|++++++|+.++++++.+++++++++|+++|
T Consensus 243 i~t~~K~lggG-~pigav~~~~~i~~~~~~------~~~~~t~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~~~~l~~~L 315 (397)
T TIGR03246 243 ILTSAKALGGG-FPIGAMLTTTEIAAHLKV------GTHGTTYGGNPLACAVAGKVLDLVNTPELLAGVKQRHDLFVDGL 315 (397)
T ss_pred EEEeehhhhCC-cceeEEEEcHHHHHhccC------CCcCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH
Confidence 99999999988 799999999999998854 34788999999999999999999988889999999999999999
Q ss_pred Hcc-cCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecC-CEEEEeCCcccCHHHHHHHHHhhhc
Q psy8199 566 TSL-ITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG-NTVYLMPPYILNKNEIQHMTSAIFQ 643 (965)
Q Consensus 566 ~~l-~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~-~~lR~~p~~~~t~~~i~~~~~~l~~ 643 (965)
+++ .+++.+..+++.|+|+++++. .+ ....+..+++.|+++|+++.+.+ +++||+||+.+++++++++++++.+
T Consensus 316 ~~l~~~~~~~~~vrg~G~~~~i~~~-~~---~~~~~~~~~~~l~~~Gv~~~~~g~~~lR~~p~~~~t~~~i~~~~~~l~~ 391 (397)
T TIGR03246 316 EKINARYNVFSEIRGKGLLIGAVLT-EA---YQGKAKQFVNAAAEEGVIALIAGPNVVRFAPSLVISDDDIDEGLARFER 391 (397)
T ss_pred HHHHhcCCCeEeeecCceEEEEEEc-Cc---hhhHHHHHHHHHHHCCeEEeecCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 987 556777899999999999986 11 11235578889999999998765 7999999999999999999999876
Q ss_pred cc
Q psy8199 644 TF 645 (965)
Q Consensus 644 ~~ 645 (965)
.+
T Consensus 392 ~l 393 (397)
T TIGR03246 392 AI 393 (397)
T ss_pred HH
Confidence 54
|
Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason. |
| >PRK03715 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-58 Score=518.99 Aligned_cols=361 Identities=27% Similarity=0.427 Sum_probs=310.1
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhH
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGAS 325 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGse 325 (965)
+|+||.|||+||||.+|+|+.+|||+||+|++|+++|++++.+.+ ..+.+++..+|+++|.+.. +.++++|++||+|
T Consensus 28 ~~~~d~dG~~~lD~~sg~~~~~lGh~~p~v~~a~~~q~~~~~~~~-~~~~~~~~~~la~~l~~~~--~~~~v~f~~SGse 104 (395)
T PRK03715 28 SWLYDHNGKRYLDFIQGWAVNCLGHCNPGMVEALAAQAEKLINPS-PAFYNEPMAKLAGLLTQHS--CFDKVFFANSGAE 104 (395)
T ss_pred CEEEECCCCEEEECCcChhhccCCCCCHHHHHHHHHHHHhccccc-ccccCHHHHHHHHHHhhcc--CCCEEEEeCCcHH
Confidence 899999999999999999999999999999999999998875543 3466889999999999875 4689999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHH
Q psy8199 326 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIAR 405 (965)
Q Consensus 326 A~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (965)
||+.|+|+++.|+. ++.+++.+||+++++|||++.+++++++.+.++..+.+..+++.+.+.
T Consensus 105 A~e~Aik~ar~~~~-~~~~~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~~~~~~~~~~~~----------------- 166 (395)
T PRK03715 105 ANEGAIKLARKWGR-KHKNGAYEIITFDHSFHGRTLATMSASGKPGWDTIFAPQVPGFPKAEL----------------- 166 (395)
T ss_pred HHHHHHHHHHHHhh-ccCCCCcEEEEECCCcCCChHHHHhhcCCcccccCCCCCCCCceeeCC-----------------
Confidence 99999999998854 334678899999999999999999999877666666555544444332
Q ss_pred HHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcc
Q psy8199 406 CAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPD 485 (965)
Q Consensus 406 ~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pD 485 (965)
+|++++++++. +++++|++|| +++++|.++|+++|+++|+++|++||+++|+|||||||||+|++|+++++++.||
T Consensus 167 ~d~~~l~~~l~---~~~aavi~Ep-v~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~GRtG~~~a~~~~gv~PD 242 (395)
T PRK03715 167 NDIASVEKLIT---DKTVAVMLEP-VQGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQTGCGRTGTLFAYELSGIEPD 242 (395)
T ss_pred chHHHHHHHcC---CCceEEEEeC-CcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCcchhhHhhcCCCCc
Confidence 57888988884 4689999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Q psy8199 486 FLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKAL 565 (965)
Q Consensus 486 ivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L 565 (965)
++||||+|+|| +|+|+++++++++. +.. ..|++||++||++|++++++|++++++++.+++++++++|+++|
T Consensus 243 i~t~gK~lg~G-~p~~av~~~~~i~~-~~~------~~~~~T~~g~pl~~aaala~L~~l~~~~l~~~~~~~g~~l~~~L 314 (395)
T PRK03715 243 IMTLGKGIGGG-VPLAALLAKAEVAV-FEA------GDQGGTYNGNPLMTAVGVAVISQLLAPGFLEGVRARGEYLKEKL 314 (395)
T ss_pred eeeehhhhhCC-cceEEEEEcccccc-ccC------CCcCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 99999999999 79999999999863 322 24789999999999999999999998899999999999999999
Q ss_pred HcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHc---CcEEeec-CCEEEEeCCcccCHHHHHHHHHhh
Q psy8199 566 TSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKN---ELLLRPI-GNTVYLMPPYILNKNEIQHMTSAI 641 (965)
Q Consensus 566 ~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~---Gi~~~~~-~~~lR~~p~~~~t~~~i~~~~~~l 641 (965)
+++.....+..++|.|+|+++++. + .....+.+.+.+. |+++.+. ++++||+||+++|+++++++++++
T Consensus 315 ~~l~~~~~i~~vrG~Glm~~i~l~--~-----~~~~~~~~~~~~~~~~Gi~~~~~~~~~lR~~p~l~~t~~ei~~~~~~l 387 (395)
T PRK03715 315 LELSEERGLEGERGEGLLRALLLG--K-----DIGPQIVEKARDMQPDGLLLNAPRPNLLRFMPALNVTTEEIDQMIAML 387 (395)
T ss_pred HHHhhcCCcCeEEcceeEEEEEec--C-----chHHHHHHHHHhccCCCEEEeecCCCEEEEeCCcccCHHHHHHHHHHH
Confidence 988433347789999999999996 2 1122344444445 9998754 579999999999999999999998
Q ss_pred hcccc
Q psy8199 642 FQTFN 646 (965)
Q Consensus 642 ~~~~~ 646 (965)
.+++.
T Consensus 388 ~~~l~ 392 (395)
T PRK03715 388 RSVLD 392 (395)
T ss_pred HHHHH
Confidence 76553
|
|
| >PLN00144 acetylornithine transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-58 Score=514.75 Aligned_cols=363 Identities=28% Similarity=0.462 Sum_probs=323.4
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhH
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGAS 325 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGse 325 (965)
+||||.|||+|||+.+|+|+.+|||+||+|++|+++|++++.+.+. .+.++...+++++|++..+ .++|+|++||||
T Consensus 7 ~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~-~~~~~~~~~la~~l~~~~~--~~~v~f~~sGse 83 (382)
T PLN00144 7 CKLYDVEGKEYLDMAAGIAVNALGHGDPDWVKAVAEQAGTLAHVSN-VYHTIPQVELAKRLVASSF--ADRVFFCNSGTE 83 (382)
T ss_pred cEEEeCCCCEEEECCcCHHhccCCCCCHHHHHHHHHHHHhcCCccc-cccCHHHHHHHHHHHhcCC--CCeEEEeCCcHH
Confidence 7999999999999999999999999999999999999998766543 3568899999999999874 579999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCC-------ceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCC
Q psy8199 326 AVEVALKMSFHYWYNKGFLN-------KKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGN 398 (965)
Q Consensus 326 A~~~Al~~a~~~~~~~g~~~-------~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (965)
|+|.|+|+||.|+..++... +.+||+++++|||+|.+++++++...++..+.+..+++.++|+
T Consensus 84 A~e~AlklAr~~~~~~~~~~~~~~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~---------- 153 (382)
T PLN00144 84 ANEAAIKFARKYQRVRAPDKKDPAASSATEFVSFSNSFHGRTLGALALTSKEQYRTPFEPLMPGVTFVEY---------- 153 (382)
T ss_pred HHHHHHHHHHHHHhccCCCCccccccccceEEEECCCcccccHHHHhcCCCccccccCCCCCCCeEEeCC----------
Confidence 99999999999976554432 5789999999999999999999987777777777777777766
Q ss_pred ChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccccccccc
Q psy8199 399 SANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACE 478 (965)
Q Consensus 399 ~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~ 478 (965)
+|+++|++++. .+++++|++|| ++|++|+..++++|+++|+++|++||+++|+|||||||||+|.+++++
T Consensus 154 -------~d~~~l~~~~~--~~~~aavi~eP-~q~~gg~~~~~~~~~~~l~~l~~~~g~llI~DEv~tg~gr~g~~~~~~ 223 (382)
T PLN00144 154 -------GNLEAARKLIQ--KGKTAAVFVEP-VQGEGGIYPATKEFLQGLRALCDEAGALLVFDEVQCGLGRTGYLWAHE 223 (382)
T ss_pred -------CCHHHHHHhcC--CCCeEEEEEcc-ccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchHhhhh
Confidence 36788888875 45799999999 799999999999999999999999999999999999999999999998
Q ss_pred ccCCCcceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHH
Q psy8199 479 HAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDM 558 (965)
Q Consensus 479 ~~~~~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~ 558 (965)
++++.||++||||+|++| +|+|++++++++++.+.. ..+++||++||++|++++++|++++++++.+++++++
T Consensus 224 ~~~~~PDi~t~sK~l~~G-~pig~v~~~~~~~~~~~~------~~~~~T~~~~pl~~aaa~a~l~~i~~~~~~~~~~~~g 296 (382)
T PLN00144 224 AYGVEPDIMTLAKPLAGG-LPIGAVLVTEKVASAINP------GDHGSTFAGGPLVCNAALAVLDKISKPGFLASVAKKG 296 (382)
T ss_pred hcCCCCCEEEecccccCC-cceEEEEEcHHHHhccCC------CCCCCCCCCCHHHHHHHHHHHHHHhhchHHHHHHHHH
Confidence 999999999999999999 799999999999988854 3478999999999999999999999889999999999
Q ss_pred HHHHHHHHcc-cCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecC--CEEEEeCCcccCHHHHH
Q psy8199 559 KKITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG--NTVYLMPPYILNKNEIQ 635 (965)
Q Consensus 559 ~~l~~~L~~l-~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~--~~lR~~p~~~~t~~~i~ 635 (965)
+++++.|+++ .++|.+..+++.|+|+++++. .. +..+...++++||++.|.+ +.+||+||+++++++++
T Consensus 297 ~~l~~~l~~~~~~~~~~~~vrg~G~~~~l~l~-~~-------~~~~~~~~~~~Gv~i~~~~~~~~lrl~p~~~~~~~~i~ 368 (382)
T PLN00144 297 EYLRELLRRKLGGNPHVKEVRGVGLLVGIQLD-VP-------AGPLVDACRDSGLLVLTAGKGDVVRLVPPLVISEAELE 368 (382)
T ss_pred HHHHHHHHHHHhhCCCceeeecCceEEEEEec-Cc-------cHHHHHHHHHCCeEEeecCCCCEEEEeCCCccCHHHHH
Confidence 9999999886 677888899999999999984 11 2467888999999998864 79999999999999999
Q ss_pred HHHHhhhcccc
Q psy8199 636 HMTSAIFQTFN 646 (965)
Q Consensus 636 ~~~~~l~~~~~ 646 (965)
++++++.+++.
T Consensus 369 ~~~~~l~~~l~ 379 (382)
T PLN00144 369 QAVEILADCLP 379 (382)
T ss_pred HHHHHHHHHHH
Confidence 99999877654
|
|
| >PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-58 Score=519.51 Aligned_cols=363 Identities=19% Similarity=0.261 Sum_probs=307.8
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhH
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGAS 325 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGse 325 (965)
+||||.|||+|||+.+|+|+.++||+||+|++|+++|++++.+ .++.++...+++++|++.+| +.++|+|++||||
T Consensus 45 ~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~---~~~~~~~~~~la~~l~~~~p-~~~~v~f~~sGse 120 (428)
T PRK12389 45 AYFYDVDGNKYIDYLAAYGPIITGHAHPHITKAITEAAENGVL---YGTPTELEIEFAKMLKEAIP-SLEKVRFVNSGTE 120 (428)
T ss_pred CEEEeCCCCEEEEccccccccccCCCCHHHHHHHHHHHHhCCc---cCCCCHHHHHHHHHHHHhCC-CCcEEEEeCCHHH
Confidence 9999999999999999999999999999999999999998643 34678999999999999987 6789999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccc------hh-cccCCCeeEecCCCCCCCCCCC
Q psy8199 326 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKE------IY-TSLLNKTYIITTPDSRNINKGN 398 (965)
Q Consensus 326 A~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~------~~-~~~~~~~~~~~~~~~~~~~~~~ 398 (965)
|++.|+|+||.| ++|.+||.++++|||++.++++.++...++. .+ .+..+++..+|.
T Consensus 121 A~e~AlklAr~~------tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 184 (428)
T PRK12389 121 AVMTTIRVARAY------TGRTKIIKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPKSIAQEVITVPF---------- 184 (428)
T ss_pred HHHHHHHHHHHh------hCCCEEEEECCCcCCChHHHHHhcCCcccccCCCCCCCCCCcccCceEEcCC----------
Confidence 999999999998 5899999999999999999999887432211 00 011123333332
Q ss_pred ChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccccccccc
Q psy8199 399 SANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACE 478 (965)
Q Consensus 399 ~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~ 478 (965)
+|+++++++++++.+++++||+|| +++++|.++|+++||++|+++|++||+++|+|||+||| |+|.+++++
T Consensus 185 -------~d~~~l~~~l~~~~~~vaavi~EP-v~g~~G~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~-Rt~~~~a~~ 255 (428)
T PRK12389 185 -------NDIEALKEALDKWGDEVAAVLVEP-IVGNFGIVEPKPGFLEAVNELAHEAGALVIYDEVITAF-RFMYGGAQD 255 (428)
T ss_pred -------CCHHHHHHHHHhcCCcEEEEEEeC-CCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEcccccc-ccCcchhhH
Confidence 478889999977667899999999 99999999999999999999999999999999999999 998888899
Q ss_pred ccCCCcceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHH
Q psy8199 479 HAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDM 558 (965)
Q Consensus 479 ~~~~~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~ 558 (965)
++|+.||++|+||+|+|| +|+|++++++++++.+... ....|++||++||++|||++++|++++++++.+++++++
T Consensus 256 ~~gv~PDivt~gK~lggG-~Pi~av~~~~~i~~~~~~~---~~~~~~~T~~gnpl~~Aaala~L~~l~~~~l~~~~~~~g 331 (428)
T PRK12389 256 LLGVEPDLTALGKIIGGG-LPIGAYGGRKDIMEQVAPL---GPAYQAGTMAGNPASMAAGIACLEVLQQEGVYEKLDRLG 331 (428)
T ss_pred HhCCCCCeeeechhhcCC-CceeEEeEHHHHHhhhccC---CCcccccCCccCHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 999999999999999999 7999999999999988531 224688999999999999999999999889999999999
Q ss_pred HHHHHHHHcc-cCCCceeee-eceeEEEEEEEeecCccc--------hhhHHHHHHHHHHHcCcEEeecC-CEEEEeCCc
Q psy8199 559 KKITKALTSL-ITHPKIINF-RQKGMIWAFDVIIEDPEQ--------IETFSKKFFVAALKNELLLRPIG-NTVYLMPPY 627 (965)
Q Consensus 559 ~~l~~~L~~l-~~~~~i~~v-~g~G~~~~i~~~~~~~~~--------~~~~~~~~~~~l~~~Gi~~~~~~-~~lR~~p~~ 627 (965)
++|+++|+++ .+++.+..+ ++.| ++++++. .+... .......+.+.|+++||++.+.+ +. +.||+
T Consensus 332 ~~l~~~L~~l~~~~~~~~~v~r~~g-~~gi~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~--~~~~l 407 (428)
T PRK12389 332 AMLEEGILEAAEKHGITITINRLKG-ALTVYFT-DEKVTNYDQAERSDGEAFGKFFKLMLNQGINLAPSKYEA--WFLTT 407 (428)
T ss_pred HHHHHHHHHHHHhCCCCEEEEecCc-EEEEEEe-CCCCCChhhhcccCHHHHHHHHHHHHHCCcEeecCCCCC--eeecC
Confidence 9999999988 557766655 7777 7788886 22110 11234578889999999998754 23 46899
Q ss_pred ccCHHHHHHHHHhhhccc
Q psy8199 628 ILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 628 ~~t~~~i~~~~~~l~~~~ 645 (965)
++++++++++++++++++
T Consensus 408 ~~t~e~id~~~~~l~~~l 425 (428)
T PRK12389 408 AHTEEDIEETLEAVDRAF 425 (428)
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 999999999999987655
|
|
| >TIGR03251 LAT_fam L-lysine 6-transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-57 Score=514.33 Aligned_cols=384 Identities=22% Similarity=0.320 Sum_probs=314.5
Q ss_pred eEEEec-CCcccccccccchhccCCCCCHHHH--HHHHHHHhhccc--cccCCCCcHHHHHHHHHHHhhc-CCCCCeEEE
Q psy8199 246 SKLITF-SGKRYLDAISSWWVNLFGHSNSYIN--KALKNQLNKLEH--VMLSNLTHKPVIKLSEKLSSLT-QYKLGHCFY 319 (965)
Q Consensus 246 ~~~~d~-dG~~ylD~~~~~~~~~lGh~~p~v~--~av~~~~~~~~~--~~~~~~~~~~~~~la~~l~~~~-~~~~~~v~~ 319 (965)
+||||. |||+|||+.+|+|+.+|||+||+|+ +|+++|++++.+ .+...+.++...+++++|++.. +.++++|+|
T Consensus 29 ~~l~D~~dG~~ylD~~~g~~~~~lGh~~p~v~~~~ai~~q~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~f 108 (431)
T TIGR03251 29 SVLVDARDGRRYLDMFSFFASMALGMNHPALVDDLAFRARLGAAAVNKPSNSDVYTVAMARFVDTFARVLGDPALPHLFF 108 (431)
T ss_pred CEEEECCCCCChhhcccChhhcCCCCCChhhhHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHhcCCCCcCEEEE
Confidence 999996 9999999999999999999999999 999999988643 2333577888999999999987 556789999
Q ss_pred cCChhHHHHHHHHHHHHHHH----hcCCCC--ceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCC
Q psy8199 320 GSDGASAVEVALKMSFHYWY----NKGFLN--KKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRN 393 (965)
Q Consensus 320 ~~sGseA~~~Al~~a~~~~~----~~g~~~--~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (965)
++|||||||.|+|+||.|+. .+|+++ |.+||.++++|||+|.+++++++...++..+.+.. +..+++.|...+
T Consensus 109 ~~sGsEAve~AlklAr~~t~~~~~~~g~~~~~~~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~-~~~~~~~p~~~~ 187 (431)
T TIGR03251 109 IEGGALAVENALKTAFDWKSRHNQARGIPAALGTQVLHLRQAFHGRSGYTLSLTNTDPRKTARFPKF-DWPRIDNPKLTF 187 (431)
T ss_pred eCCcHHHHHHHHHHHHHHhhcchhhcCCCCCCCceEEEECCccCCcchhhhhccCCccccccCCCCC-CCccCCCCcccC
Confidence 99999999999999999863 345543 67899999999999999999998654444443332 222334443211
Q ss_pred CC--CC-CChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCc
Q psy8199 394 IN--KG-NSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGR 470 (965)
Q Consensus 394 ~~--~~-~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr 470 (965)
.. .. .....+..++++++++.+..+++++||||+|| +++++|.++||++||++|+++|++||+++|+|||||||||
T Consensus 188 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iAavivEP-v~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~Gr 266 (431)
T TIGR03251 188 PLDAPNLDQVIALEEEALRQARAAFAERPHDIACFIAEP-IQGEGGDNHFRPEFLRAMRALCDEHDALLIFDEVQTGVGL 266 (431)
T ss_pred CccccccchhhHHHHHHHHHHHHHHHhCCCcEEEEEEec-cccCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhccCc
Confidence 10 01 11344667889999999987778999999999 9999999999999999999999999999999999999999
Q ss_pred ccccccccccCCCcceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccH
Q psy8199 471 TGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNI 550 (965)
Q Consensus 471 ~G~~~~~~~~~~~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~ 550 (965)
+|.+|+++++|+.||++|+||++ |+++++..+++.+.+..... ....+++||++||++|++++++|++++++++
T Consensus 267 tG~~~a~~~~gv~PDi~~~gK~~-----~~~g~~~~~~i~~~~~~~~~-~~~~~~~T~~gnpl~~aaa~a~L~~l~~~~l 340 (431)
T TIGR03251 267 TGTAWAYQQLGVQPDIVAFGKKT-----QVCGIMAGRRVDEVADNVFA-VPSRLNSTWGGNLVDMVRATRILEIIEEERL 340 (431)
T ss_pred cchHHHHHhcCCCCCEEEecccC-----ccceEEecchHHHhhhhccc-CccccCCCCCCCHHHHHHHHHHHHHHHhcCH
Confidence 99999999999999999999986 45556666654332210000 1124789999999999999999999988889
Q ss_pred HHHHHHHHHHHHHHHHcc-cCCC-ceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecC-CEEEEeCCc
Q psy8199 551 LQRISQDMKKITKALTSL-ITHP-KIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG-NTVYLMPPY 627 (965)
Q Consensus 551 ~~~~~~~~~~l~~~L~~l-~~~~-~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~-~~lR~~p~~ 627 (965)
.+++++++++|+++|+++ .+++ .+.+++|.|+|+++++. + ......+.+.|+++||++.+.+ +.+||+||+
T Consensus 341 ~~~~~~~g~~l~~~L~~l~~~~~~~i~~vrg~G~~~~i~~~--~----~~~~~~~~~~l~~~Gvl~~~~g~~~lr~~P~l 414 (431)
T TIGR03251 341 VDNARVQGAHLLARLHELAAEFPHLVSNPRGRGLMCAFDLP--S----TADRDEVIRQLYREGVLLLGCGERSIRFRPPL 414 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccceecccccceeEEEEeC--C----HHHHHHHHHHHHhCCeEEecCCCCeEEEECCc
Confidence 999999999999999987 5677 67899999999999985 2 2234568889999999998866 789999999
Q ss_pred ccCHHHHHHHHHhhhc
Q psy8199 628 ILNKNEIQHMTSAIFQ 643 (965)
Q Consensus 628 ~~t~~~i~~~~~~l~~ 643 (965)
++++++++++++++.+
T Consensus 415 ~~t~~eid~~l~~l~~ 430 (431)
T TIGR03251 415 TVTREEIDAAIDAIRR 430 (431)
T ss_pred cCCHHHHHHHHHHHHh
Confidence 9999999999998764
|
Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites. |
| >PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-58 Score=510.05 Aligned_cols=329 Identities=36% Similarity=0.621 Sum_probs=293.0
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhH
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGAS 325 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGse 325 (965)
+||||.|||+|||+.+++|+++|||+||+|.+|+++|++++.+.+...+.++...+|+++|.+.+|.+.++|+|++||||
T Consensus 8 ~~l~d~dG~~~lD~~~~~~~~~lGh~~p~i~~ai~~~~~~~~~~~~~~~~~~~~~~la~~L~~~~p~~~~~v~f~~sGse 87 (339)
T PF00202_consen 8 AYLWDVDGREYLDFMSGYGSVNLGHNHPEIAEAIAEQANKLNYVSFSGFTHPEAAELAEKLAELFPGGLDRVFFANSGSE 87 (339)
T ss_dssp TEEEETTSEEEEESSHHHHTTTT-BT-HHHHHHHHHHHHHCSSCSTTTSEEHHHHHHHHHHHHHSSTTEEEEEEESSHHH
T ss_pred CEEEECCCCEEEECCCCccceecCCCccccchhHHHHhhhcccccccceeccchhhhhhhhhhccccccceeeeccCchH
Confidence 79999999999999999999999999999999999999998777667899999999999999999878899999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHH
Q psy8199 326 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIAR 405 (965)
Q Consensus 326 A~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (965)
|||.|+|+|++|+..++.++|.+|++++++|||+|.+++++++++.++..+.+...++.++|.|.... +.+..
T Consensus 88 Ave~Alkla~~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~-------~~~~~ 160 (339)
T PF00202_consen 88 AVEAALKLARQYHNKRAYTGRRKILAFEGSYHGRTLGALSLTGNPPYRKGFGPLYPGVVFVPFPDPAA-------DEEEQ 160 (339)
T ss_dssp HHHHHHHHHHHHHHHTHHHTTTEEEEETTTB-TSSHHHHHHSSSTHHHTTTCSSSTTEEEEETTCHHH-------HHHHH
T ss_pred HHHHHHHHhhcccccccccCCceEEEeeeeeeccCcccccccCCccccccccccccccccccCCccch-------hhhHH
Confidence 99999999998877777789999999999999999999999998888888888888888888874321 22333
Q ss_pred HHHHHHHHHHHh-CCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCc
Q psy8199 406 CAIFDLEILLKK-NHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWP 484 (965)
Q Consensus 406 ~d~~~le~~l~~-~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~p 484 (965)
..++++++.+.+ ..++++|||+|| +++++|.+.++++||++|+++|++||+++|+|||+|||||+|++|+++++|+.|
T Consensus 161 ~~~~~~~~~~~~~~~~~iaavivEP-i~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gRtG~~~a~~~~gv~P 239 (339)
T PF00202_consen 161 ACLNALEELIAALNADEIAAVIVEP-IQGEGGMIPPPPEYLRELRELCREHGILLIADEVQTGFGRTGKFFASEHYGVDP 239 (339)
T ss_dssp HHHHHHHHHHHHHHGGGEEEEEEES-SBTTTTSBEE-TTHHHHHHHHHHHTT-EEEEEETTTTTTTTSSSSGHHHHTSSS
T ss_pred HHHHHHHHHHHhhcCCcEEEEEEec-cccccCccccccchhhehcccccccccceecccccccccccCCccceecccccC
Confidence 445555554433 367899999999 999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Q psy8199 485 DFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKA 564 (965)
Q Consensus 485 Divt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~ 564 (965)
|++|+||+++|| +|+|++++++++++.+.. ..|++||++||++|++++++|++++++++.+++++++++|+++
T Consensus 240 Div~~gK~l~gG-~p~sav~~~~~i~~~~~~------~~~~~T~~g~p~~~aaa~~~l~~~~~~~~~~~~~~~g~~l~~~ 312 (339)
T PF00202_consen 240 DIVTFGKGLGGG-LPISAVLGSEEIMEAFQP------GSHGSTFGGNPLSCAAALATLEILEEEDLLERVRELGERLREG 312 (339)
T ss_dssp SEEEEEGGGGTT-SSEEEEEEEHHHHTTSCT------TSSTCTTTT-HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred cccccccchhhh-hhcccccccchhhccccc------cccccccccchHhhhhhhhHHHhhccHHHHHHHHHHHHHHHHH
Confidence 999999999999 899999999999998854 2389999999999999999999999999999999999999999
Q ss_pred HHcc-cCCCceeeeeceeEEEEEEEe
Q psy8199 565 LTSL-ITHPKIINFRQKGMIWAFDVI 589 (965)
Q Consensus 565 L~~l-~~~~~i~~v~g~G~~~~i~~~ 589 (965)
|+++ .+++.+..|+|.|+|+++++.
T Consensus 313 L~~l~~~~~~i~~vrg~Gl~~~ie~~ 338 (339)
T PF00202_consen 313 LRELAARYPLIGEVRGIGLMIGIELV 338 (339)
T ss_dssp HHHHHHHTTTEEEEEEETTEEEEEES
T ss_pred HHHHHHhCCCeEEEeeeCeEEEEEEE
Confidence 9999 556899999999999999985
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C .... |
| >PLN02482 glutamate-1-semialdehyde 2,1-aminomutase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-57 Score=513.62 Aligned_cols=397 Identities=21% Similarity=0.241 Sum_probs=311.6
Q ss_pred cccccccccccccccccCcccccccccCCCce-----eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccc
Q psy8199 214 FNRQALHAYKLGLIHPKNNLKLKWRINLPDDI-----SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEH 288 (965)
Q Consensus 214 ~~~~~Lha~~l~f~~p~~~~~~~~~~~~p~~~-----~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~ 288 (965)
+.+.+.+..+-+..++........ +.|+.+ +||||+|||+|||+.+|+|+.+|||+||+|.+|+++|++++.+
T Consensus 56 l~~ra~~~~pgGv~~~~r~~~~~~--~~p~~~~~a~G~~l~D~dG~~yiD~~~g~g~~~lGh~~p~v~~av~~ql~~~~~ 133 (474)
T PLN02482 56 IFKAAKELMPGGVNSPVRAFKSVG--GQPIVFDRVKGSYAWDVDGNEYIDYVGSWGPAIIGHADDEVLAALAETMKKGTS 133 (474)
T ss_pred HHHHHHhhCCCCCCCcchhhcccC--CCCeeEEEeeeCEEEECCCCEEEEecccccccccCCCCHHHHHHHHHHHhhCCC
Confidence 334455555555555554332211 245544 9999999999999999999999999999999999999998753
Q ss_pred cccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCcccccc--c
Q psy8199 289 VMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALA--V 366 (965)
Q Consensus 289 ~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~--~ 366 (965)
.+.+++...+|+++|++.+| +.++|+|++|||||++.|+|+||.| ++|.+||.++++|||++...+. .
T Consensus 134 ---~~~~~~~~~~lAe~l~~~~p-~~~~v~f~~SGsEA~e~AlklAR~~------tgr~~Ii~~~g~YHG~~~~~~~~~~ 203 (474)
T PLN02482 134 ---FGAPCLLENVLAEMVIDAVP-SVEMVRFVNSGTEACMGVLRLARAY------TGREKIIKFEGCYHGHADSFLVKAG 203 (474)
T ss_pred ---CCCCCHHHHHHHHHHHHhCC-CCCEEEEeCChHHHHHHHHHHHHHh------cCCCEEEEECCccCCCcchhhhhcC
Confidence 34578899999999999998 5899999999999999999999998 6899999999999998754332 2
Q ss_pred cCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHH
Q psy8199 367 TNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLK 446 (965)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~ 446 (965)
++...... +..++....+.+ ....+.+||+++|+++++++.+++++||+|| +++++|.++|+++||+
T Consensus 204 ~~~~~~~~---~~~~g~~~~~~~---------~~~~~~~nd~~~l~~~l~~~~~~iAavI~Ep-v~g~~G~i~p~~~fl~ 270 (474)
T PLN02482 204 SGVATLGL---PDSPGVPKAATS---------ATLTAPYNDLEAVKKLFEANKGEIAAVILEP-VVGNSGFIVPKKEFLE 270 (474)
T ss_pred CCccccCC---CCCCCCCCCCCC---------CeEEecCCChHHHHHHHHhCCCceEEEEECC-CCCCCCCcCCCHHHHH
Confidence 22111110 111111000000 0011334688999999987778899999999 9999999999999999
Q ss_pred HHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccC
Q psy8199 447 LVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSH 526 (965)
Q Consensus 447 ~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~ 526 (965)
+|+++|++||+++|+|||+||| |+|.+|+++++|+.||++||||+|+|| +|+|++++++++++.+.. ...+.|++
T Consensus 271 ~lr~lc~~~g~lLI~DEV~tGf-R~g~~ga~~~~gv~PDi~t~gK~lggG-~Pigav~g~~ei~~~~~~---~~~~~~~~ 345 (474)
T PLN02482 271 GLREITKENGALLVFDEVMTGF-RIAYGGAQEYFGITPDLTTLGKVIGGG-LPVGAYGGRREIMEMVAP---AGPMYQAG 345 (474)
T ss_pred HHHHHHHHcCCEEEEeccccCe-ecCcchHhHHhCCCCCEEEecchhhCC-CceEEEEEcHHHHHhhcc---CCCccccc
Confidence 9999999999999999999999 999999999999999999999999999 799999999999998863 12367899
Q ss_pred CCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcc-cCC--Cce-eeeeceeEEEEEEEeecCcc--------
Q psy8199 527 SYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSL-ITH--PKI-INFRQKGMIWAFDVIIEDPE-------- 594 (965)
Q Consensus 527 t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l-~~~--~~i-~~v~g~G~~~~i~~~~~~~~-------- 594 (965)
||++||++|++++++|++++++++++++++++++|+++|+++ .++ |.+ ..+++ |+++++. .+..
T Consensus 346 T~~gnpl~~aAala~L~~l~~~~~~~~~~~~g~~l~~~L~~l~~~~g~~~~~~~v~g---~~gi~f~-~~~~~~~~~~~~ 421 (474)
T PLN02482 346 TLSGNPLAMTAGIHTLKRLQQPGTYEYLDKITKKLIQGILEAGKKAGHEMCGGYISG---MFGFFFT-EGPVYNFADAKK 421 (474)
T ss_pred CcchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHhcCCCEEEcccce---EEEEEEe-cCCccChhhhcc
Confidence 999999999999999999988899999999999999999988 443 332 23333 7777775 2210
Q ss_pred chhhHHHHHHHHHHHcCcEEeecCCEEEEeCCcccCHHHHHHHHHhhhccc
Q psy8199 595 QIETFSKKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 595 ~~~~~~~~~~~~l~~~Gi~~~~~~~~lR~~p~~~~t~~~i~~~~~~l~~~~ 645 (965)
........+.+.|+++||++.+.+...+ .||+.+|+++|+++++++.+++
T Consensus 422 ~d~~~~~~~~~~l~~~Gv~~~~~~~~~~-~psl~ht~~dId~~l~al~~~l 471 (474)
T PLN02482 422 SDTAKFARFHRGMLEEGVYLAPSQFEAG-FTSLAHTEEDIDFTIAAAERVL 471 (474)
T ss_pred CCHHHHHHHHHHHHHCCeEEeccCCCCC-cCCCCCCHHHHHHHHHHHHHHH
Confidence 1112344678889999999987542122 4999999999999999988654
|
|
| >PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-56 Score=509.43 Aligned_cols=366 Identities=27% Similarity=0.422 Sum_probs=323.1
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhH
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGAS 325 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGse 325 (965)
+||||.|||+|||+.+|+|+++|||+||+|++|+++|++++.+.. ..+.++...+|+++|++..+ .++|+|++||+|
T Consensus 31 ~~~~d~dG~~~lD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~-~~~~~~~~~~la~~l~~~~~--~~~v~~~~sGse 107 (406)
T PRK12381 31 SRLWDQQGKEYIDFAGGIAVNALGHAHPALREALNEQASKFWHTG-NGYTNEPVLRLAKKLIDATF--ADRVFFCNSGAE 107 (406)
T ss_pred CEEEeCCCCEEEEcCcCHhhccCCCCCHHHHHHHHHHHhhccccc-CccCCHHHHHHHHHHHhhCC--CCeEEEcCCcHH
Confidence 999999999999999999999999999999999999998865443 35678889999999999874 579999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHH
Q psy8199 326 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIAR 405 (965)
Q Consensus 326 A~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (965)
||+.|+|+||.|+..++.+++.+|+.++++|||++.+++++++.+.++..+.++.+++.++|.
T Consensus 108 A~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 170 (406)
T PRK12381 108 ANEAALKLARKYAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPKYSQDFAPLPPDIRHAAY----------------- 170 (406)
T ss_pred HHHHHHHHHHHHHhhcCCCCCCeEEEECCCcCCcchhHHhhcCCcccccCCCCCCCCeeEeCC-----------------
Confidence 999999999999776666788999999999999999999999977777666666666655554
Q ss_pred HHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcc
Q psy8199 406 CAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPD 485 (965)
Q Consensus 406 ~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pD 485 (965)
+|++++++.+. +++++|++|| +++++|+++|+++|+++|+++|++||+++|+||||+||||+|++++++++++.||
T Consensus 171 ~d~~~l~~~l~---~~~aaviiEP-v~~~gg~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~gr~G~~~~~~~~~v~pD 246 (406)
T PRK12381 171 NDLNSASALID---DQTCAVIVEP-IQGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVTPD 246 (406)
T ss_pred CCHHHHHHhcc---CCeeEEEEeC-CcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEcchhhCCCCCcchhhhHhhCCCCC
Confidence 36788888884 4799999999 9999999999999999999999999999999999999999999888889999999
Q ss_pred eeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Q psy8199 486 FLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKAL 565 (965)
Q Consensus 486 ivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L 565 (965)
++||||+++|| +|+|++++++++++.+.. ..+++||++||++|++++++|++++++++.++++++++++.++|
T Consensus 247 i~t~sK~l~gG-~~ig~~~~~~~~~~~~~~------~~~~~t~~~~pl~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L 319 (406)
T PRK12381 247 VLTTAKALGGG-FPIGAMLTTEKCASVMTV------GTHGTTYGGNPLASAVAGKVLELINTPEMLNGVKQRHDWFVERL 319 (406)
T ss_pred EEEehhhhhCC-CceEEEEEcHHHHhhcCC------CCCCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH
Confidence 99999999988 899999999999988854 35789999999999999999999988889999999999999999
Q ss_pred Hcc-cCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecC-CEEEEeCCcccCHHHHHHHHHhhhc
Q psy8199 566 TSL-ITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG-NTVYLMPPYILNKNEIQHMTSAIFQ 643 (965)
Q Consensus 566 ~~l-~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~-~~lR~~p~~~~t~~~i~~~~~~l~~ 643 (965)
+++ .+++.+..+++.|+|+++++. .+ ....+..+.+.|+++||++.+.+ +.+||+||+++++++++++++++.+
T Consensus 320 ~~l~~~~~~~~~vrg~Gl~~~~~l~-~~---~~~~~~~~~~~l~~~Gv~v~~~g~~~lRl~p~~~~t~~~i~~~~~~l~~ 395 (406)
T PRK12381 320 NTINARYGLFSEIRGLGLLIGCVLN-AE---YAGKAKQISQEAAKAGVMVLIAGPNVVRFAPALNISEEEITTGLDRFAR 395 (406)
T ss_pred HHHHhhCCCEEEEecCeEEEEEEec-Cc---hhhHHHHHHHHHHHCCcEEeeCCCCEEEEeCCccCCHHHHHHHHHHHHH
Confidence 988 456767899999999999986 11 01234567889999999998765 7999999999999999999999876
Q ss_pred ccc
Q psy8199 644 TFN 646 (965)
Q Consensus 644 ~~~ 646 (965)
.+.
T Consensus 396 ~l~ 398 (406)
T PRK12381 396 ACE 398 (406)
T ss_pred HHH
Confidence 553
|
|
| >PLN02624 ornithine-delta-aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-56 Score=511.23 Aligned_cols=371 Identities=27% Similarity=0.447 Sum_probs=325.1
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhH
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGAS 325 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGse 325 (965)
+||||.||++||||.+|+++.++||+||+|++|+++|++++.+.+. .+.++...+|+++|+++++ .++++|++||+|
T Consensus 67 ~~l~d~dG~~ylD~~sg~~~~~~Gh~~p~v~~ai~~ql~~~~~~~~-~~~~~~~~~la~~L~~~~~--~~~~~f~~SGse 143 (474)
T PLN02624 67 SRIWDPEGKKYLDFLSAYSAVNQGHCHPKIIKALTEQAEKLTLSSR-AFYNDKFPEFAEYLTSMFG--YDMVLPMNTGAE 143 (474)
T ss_pred CEEEECCCCEEEEcccchhcccCCCCCHHHHHHHHHHHHhcCCccc-ccCCHHHHHHHHHHHhhcC--CCeEEEeCChHH
Confidence 9999999999999999999999999999999999999999765543 5778999999999999984 689999999999
Q ss_pred HHHHHHHHHHHHHHh-cCCC-CceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHH
Q psy8199 326 AVEVALKMSFHYWYN-KGFL-NKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEI 403 (965)
Q Consensus 326 A~~~Al~~a~~~~~~-~g~~-~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (965)
||+.|+|+|+.|+.. +|.+ ++.+|+.+.++|||++.+++++++.+.+...+.+..+++.++|+
T Consensus 144 A~e~AlklAr~~~~~~~g~~~~~~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~--------------- 208 (474)
T PLN02624 144 GVETAIKLARKWGYEKKGIPKNEAIIVSCCGCFHGRTLAAISMSCDNEATRGFGPLLPGHLKVDF--------------- 208 (474)
T ss_pred HHHHHHHHHHHHHHhhcCCCCCCcEEEEECCCcCCCCHHHhhcCCCccccccCCCCCCCceEeCC---------------
Confidence 999999999998543 2333 45689999999999999999999887777777777777776655
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCC
Q psy8199 404 ARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIW 483 (965)
Q Consensus 404 ~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~ 483 (965)
+|++.++++++..++++++|++|| +++++|.+.|+++||++|+++|++||+++|+||||+||||+|.+++++++++.
T Consensus 209 --~d~~~l~~~l~~~~~~iaaiiiEp-v~~~~G~v~p~~~~L~~l~~lc~~~gillI~DEv~tG~GrtG~~~a~~~~~i~ 285 (474)
T PLN02624 209 --GDLDALEKIFEEDGDRIAAFLFEP-IQGEAGVVIPPDGYLKAVRELCSKHNVLMIADEIQTGLARTGKMLACDWEEVR 285 (474)
T ss_pred --CCHHHHHHHHHhCCCCEEEEEECC-ccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCcCcCcchhhHHhcCCC
Confidence 467889998976667899999999 99999999999999999999999999999999999999999999998889999
Q ss_pred cceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Q psy8199 484 PDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITK 563 (965)
Q Consensus 484 pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~ 563 (965)
||+++|||+++||++|+|++++++++++.+.. ..+++||++||++|+++.++|+.++++++.+++.++++++++
T Consensus 286 pDiv~lsK~lggG~~pigav~~~~~i~~~~~~------~~~~~T~~g~pl~~aaa~aaLe~l~~~~l~~~~~~~~~~l~~ 359 (474)
T PLN02624 286 PDVVILGKALGGGVIPVSAVLADKDVMLCIKP------GEHGSTFGGNPLASAVAMAALQVVQDEKLAERSAKLGQELRD 359 (474)
T ss_pred CCEEEecccccCCCCcceeeeecHHHHhHhcc------CCcCCCCCCCHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence 99999999999998999999999999887754 357899999999999999999999888899999999999999
Q ss_pred HHHcc-cCCC-ceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecC-CEEEEeCCcccCHHHHHHHHHh
Q psy8199 564 ALTSL-ITHP-KIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG-NTVYLMPPYILNKNEIQHMTSA 640 (965)
Q Consensus 564 ~L~~l-~~~~-~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~-~~lR~~p~~~~t~~~i~~~~~~ 640 (965)
+|+++ .+++ .+..++|.|+|+.+++. +.......+..+.+.|.++||++.|.+ +++||+||+.++++++++++++
T Consensus 360 ~L~~l~~~~~~~i~~vrg~G~~~~i~l~--~~~~~~~~a~~~~~~L~e~GV~v~p~~~~~lR~~p~l~~t~e~id~~l~~ 437 (474)
T PLN02624 360 QLQKIQKQFPKLIKEVRGRGLLNAVVLN--SPKLGPVSAYDVCLKLKERGLLAKPTHDTIIRLAPPLSISEDELQECSKA 437 (474)
T ss_pred HHHHHHHhCCCceEEEEeeEEEEEEEec--CCCcChHHHHHHHHHHHhCCeEEecCCCCEEEEECCccCCHHHHHHHHHH
Confidence 99988 4566 47789999999999885 211111234568888999999998864 7899999999999999999999
Q ss_pred hhccc
Q psy8199 641 IFQTF 645 (965)
Q Consensus 641 l~~~~ 645 (965)
+.+.+
T Consensus 438 L~~~l 442 (474)
T PLN02624 438 LSDVL 442 (474)
T ss_pred HHHHH
Confidence 87654
|
|
| >PRK06149 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-56 Score=550.71 Aligned_cols=383 Identities=21% Similarity=0.351 Sum_probs=316.8
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhH
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGAS 325 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGse 325 (965)
+|+||.|||+|||+.+|+ .++||+||+|++|+++|+.++.+. +.+.++...+|+++|++.+|.+.++|+|++||||
T Consensus 577 ~~l~D~dG~~ylD~~~~~--~~lGh~hp~v~~Ai~~q~~~l~~~--~~~~~~~~~elae~L~~~~p~~~~~v~f~~SGsE 652 (972)
T PRK06149 577 HHLFDMAGRSYLDMVNNV--TVLGHGHPRLAAAAARQWSLLNTN--SRFHYAAVAEFSERLAALAPDGLDTVFLVNSGSE 652 (972)
T ss_pred eEEEeCCCCEEEECCCCc--cccCCCCHHHHHHHHHHHHhcccc--ccccCHHHHHHHHHHHHhCCCCcCEEEEeCCchH
Confidence 999999999999999885 479999999999999999987543 3457789999999999999877899999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCcc-chhcccCCCeeEecCCCCCCCCCCCChhHHH
Q psy8199 326 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFK-EIYTSLLNKTYIITTPDSRNINKGNSANEIA 404 (965)
Q Consensus 326 A~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (965)
||+.|+|+||.+ ++|.+||+++++|||+|.+++++++..... ..+.+...++..++.|+.++.+.........
T Consensus 653 A~e~AlklAr~~------tgr~~ii~~~~~yHG~t~ga~~~s~~~~~~~~~~~~~~~~v~~~~~p~~~~~~~~~~~~~~~ 726 (972)
T PRK06149 653 ANDLAIRLAWAA------SGRRDVVSVLEAYHGWTVATDAVSTSIADNPQALETRPDWVHPVESPNTYRGRFRGADSAAD 726 (972)
T ss_pred HHHHHHHHHHHh------cCCCeEEEEeCCCCCcChhHhhhcCCccccccccCCCCCCeEEeCCCcccCCcCCCcccHHH
Confidence 999999999998 588999999999999999998886632211 1122333456666666654433211110111
Q ss_pred -HHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccc-cccccccCC
Q psy8199 405 -RCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK-FFACEHAEI 482 (965)
Q Consensus 405 -~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~-~~~~~~~~~ 482 (965)
.+++++..+.+.+.++++++||+|| +++++|.++||++||++|+++|++||+++|+|||||||||+|+ +|+++++|+
T Consensus 727 ~~~~~~~~l~~~~~~~~~iAavI~Ep-v~g~gG~i~~p~~yL~~l~~lc~~~g~llI~DEV~tGfGRtG~~~~a~e~~gv 805 (972)
T PRK06149 727 YVRDVVAQLEELDASGRGLAGFICEP-VYGNAGGIALPPGYLQQVYAAVRARGGVCIADEVQVGYGRLGHYFWGFEQQGV 805 (972)
T ss_pred HHHHHHHHHHHHhhcCCceEEEEEcc-cccCCCcccCCHHHHHHHHHHHHHcCCEEEEEeehhcCCccCccchhhhhcCC
Confidence 1222222222223467899999999 9999999999999999999999999999999999999999997 679999999
Q ss_pred CcceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Q psy8199 483 WPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKIT 562 (965)
Q Consensus 483 ~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~ 562 (965)
.||++||||+|||| +|+|++++++++++.+... ..+.+||+|||++|++|+++|++++++++.+++++++++|+
T Consensus 806 ~PDivt~gK~lg~G-~Pl~av~~~~~i~~~~~~~-----~~~~sT~~gnP~~~aaala~L~~i~~e~l~~~~~~~G~~l~ 879 (972)
T PRK06149 806 VPDIITMAKGMGNG-HPLGAVITRREIAEALEAE-----GYFFSSTGGSPVSCRIGMAVLDVLREEKLQENARRVGDHLK 879 (972)
T ss_pred CCCEEEecccccCC-eeeEEEEEcHHHHhhhccC-----CcccCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 99999999999999 7999999999999988641 12457899999999999999999999999999999999999
Q ss_pred HHHHcc-cCCCceeeeeceeEEEEEEEeecCcc---chhhHHHHHHHHHHHcCcEEeecC---CEEEEeCCcccCHHHHH
Q psy8199 563 KALTSL-ITHPKIINFRQKGMIWAFDVIIEDPE---QIETFSKKFFVAALKNELLLRPIG---NTVYLMPPYILNKNEIQ 635 (965)
Q Consensus 563 ~~L~~l-~~~~~i~~v~g~G~~~~i~~~~~~~~---~~~~~~~~~~~~l~~~Gi~~~~~~---~~lR~~p~~~~t~~~i~ 635 (965)
++|+++ .++|.+.+|+|.|+|+++++. .+.. .....+..+.+.|+++||++.+.+ +++||.||+++++++++
T Consensus 880 ~~L~~l~~~~~~i~~vrG~Gl~~gvel~-~~~~~~~~~~~~~~~i~~~l~~~Gvl~~~~g~~~~vl~~~Ppl~it~~~id 958 (972)
T PRK06149 880 ARLEALADRHPLIGAVHGMGLYLGVELV-RDRQTLEPATEETAAICDRLLELGVIMQPTGDHLNILKIKPPLCLDRESAD 958 (972)
T ss_pred HHHHHHHHhCCCeEEEeecceEEEEEEe-cCcccCCCChHHHHHHHHHHHhCCeEEeecCCCCCEEEEECCCcCCHHHHH
Confidence 999998 568989999999999999996 3221 122345678899999999998865 79999999999999999
Q ss_pred HHHHhhhcccc
Q psy8199 636 HMTSAIFQTFN 646 (965)
Q Consensus 636 ~~~~~l~~~~~ 646 (965)
++++++.+++.
T Consensus 959 ~~~~~l~~~l~ 969 (972)
T PRK06149 959 FFVDMLDRVLT 969 (972)
T ss_pred HHHHHHHHHHH
Confidence 99999887653
|
|
| >PRK07046 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-56 Score=507.00 Aligned_cols=370 Identities=18% Similarity=0.224 Sum_probs=304.6
Q ss_pred CCCce-----eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCC
Q psy8199 241 LPDDI-----SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLG 315 (965)
Q Consensus 241 ~p~~~-----~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~ 315 (965)
.|+++ +||||+|||+|||+.+++|+.+|||+||+|++|+++|++++.+ .+++++...+++++|++.++ .+
T Consensus 57 ~p~~~~~a~G~~v~D~DG~~yiD~~~g~g~~~lGh~~p~i~~Av~~q~~~~~~---~~~~~~~~~~lAe~l~~~~~--~~ 131 (453)
T PRK07046 57 FPLFVAEARGARFTDVDGHRYDDFCLGDTGAMFGHSPAPVARALAEQARRGLT---TMLPSEDAAWVGEELARRFG--LP 131 (453)
T ss_pred CCCeEEeeeeCEEEeCCCCEEEEecccccccccCCCCHHHHHHHHHHHHhCCC---CCCCCHHHHHHHHHHHHHhC--CC
Confidence 46655 9999999999999999999999999999999999999998643 35678999999999999984 78
Q ss_pred eEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccc--cCCcCccchhccc----CCCeeEecCC
Q psy8199 316 HCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAV--TNIQSFKEIYTSL----LNKTYIITTP 389 (965)
Q Consensus 316 ~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~--~~~~~~~~~~~~~----~~~~~~~~~~ 389 (965)
+|+|++|||||++.|+|+||.| ++|++|+.|+++|||++.+++.. ++....+..+.+. ...+..
T Consensus 132 ~v~F~nSGtEA~e~AlrlAR~~------TGr~~ii~~~g~YHG~~d~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~---- 201 (453)
T PRK07046 132 YWQVATTATDANRFVLRWARAV------TGRPKILVFNGCYHGTVDDVFVDLVDGRPVQRPGLLGQVHDLTATTRV---- 201 (453)
T ss_pred EEEEECCHHHHHHHHHHHHHHh------hCCCEEEEECCCCCCCcHHhHhhccCCCCCCCCCCCCCCccccCceEe----
Confidence 9999999999999999999998 68999999999999998766643 2222111111110 111122
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCC
Q psy8199 390 DSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCG 469 (965)
Q Consensus 390 ~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~g 469 (965)
+.+||++++++++. .+++||||+|| +++++|.++|+++||++|+++|++||+++|+|||+| |
T Consensus 202 -------------~~~nd~~~l~~~l~--~~~vAavi~EP-i~g~~G~~~p~~~fl~~lr~lc~~~g~llI~DEV~t-f- 263 (453)
T PRK07046 202 -------------VEFNDLAALEAALA--DGDVAAVLAEP-AMTNIGMVLPEPGFHEALRELTRRYGTLLVIDETHT-I- 263 (453)
T ss_pred -------------eCCCCHHHHHHHhC--CCCeEEEEECC-CCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEcccc-C-
Confidence 22368899999885 46799999999 999999999999999999999999999999999999 5
Q ss_pred cccccccccccCCCcceeeeccccCCCcccceeeeecHHHHHhhhccC---CcccccccCCCCCCHHHHHHHHHHHHHHh
Q psy8199 470 RTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKN---NINIFLHSHSYSGNPLACCAALATLEIFN 546 (965)
Q Consensus 470 r~G~~~~~~~~~~~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~---~~~~~~~~~t~~~~~~~~aaa~a~L~~~~ 546 (965)
|+|.....+++|+.||++||||+|+|| +|+|++++++++++.+.... ....+.|++||++||++|++++++|++++
T Consensus 264 r~g~Gg~~~~~gv~PDi~t~gK~lggG-~Pi~av~g~~~i~~~~~~~~~~~~~~~~~~~~T~~gnpl~~aa~~a~L~~l~ 342 (453)
T PRK07046 264 SSGPGGYTRAHGLEPDFLVVGKPIAGG-VPCAVYGFSAELAERAQAAKASAPPGHSGIGTTLSANALAMAAMRATLAEVM 342 (453)
T ss_pred ccCCcchhHHhCCCccceeehhhhcCC-CcceeeeehHHHHHHHhhccccCCCCCceeCCCCcccHHHHHHHHHHHHHHh
Confidence 466555677889999999999999999 79999999999999885311 11235688999999999999999999998
Q ss_pred cccHHHHHHHHHHHHHHHHHcc-cCCCceeeeeceeEEEEEEEeecCc-cc-------hhhHHHHHHHHHHHcCcEEeec
Q psy8199 547 KDNILQRISQDMKKITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDP-EQ-------IETFSKKFFVAALKNELLLRPI 617 (965)
Q Consensus 547 ~~~~~~~~~~~~~~l~~~L~~l-~~~~~i~~v~g~G~~~~i~~~~~~~-~~-------~~~~~~~~~~~l~~~Gi~~~~~ 617 (965)
++++++++++++++|+++|+++ .+++....+++.|+++.+.+..... .. .......+...|+++||++.|.
T Consensus 343 ~~~~~~~~~~~g~~l~~~L~~l~~~~~~~~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~ 422 (453)
T PRK07046 343 TEAAYAHMLALAARLAAGLRAVIARHGLPWHVTRVGARVEFQFAPTPPRNGAEAAAALDPELEAALHLYLLNRGVLITPF 422 (453)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCcEEEEEEeCCCCCCHHHHhcccCHHHHHHHHHHHHHCCCEEecc
Confidence 8889999999999999999987 5666667899999999988751111 00 1123446778899999999987
Q ss_pred CCEEEEeCCcccCHHHHHHHHHhhhcccc
Q psy8199 618 GNTVYLMPPYILNKNEIQHMTSAIFQTFN 646 (965)
Q Consensus 618 ~~~lR~~p~~~~t~~~i~~~~~~l~~~~~ 646 (965)
++.++++|+ +++++|+++++++.+++.
T Consensus 423 ~~~~~~~p~--~t~~did~~~~~~~~~l~ 449 (453)
T PRK07046 423 HNMMLVCPA--TTAADVDRLVAAFDACLG 449 (453)
T ss_pred cCcEEEeCC--CCHHHHHHHHHHHHHHHH
Confidence 778899986 999999999999887654
|
|
| >PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-56 Score=501.41 Aligned_cols=392 Identities=18% Similarity=0.271 Sum_probs=314.7
Q ss_pred ccccccccccccccCcccccccccCCCce-----eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhcccccc
Q psy8199 217 QALHAYKLGLIHPKNNLKLKWRINLPDDI-----SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVML 291 (965)
Q Consensus 217 ~~Lha~~l~f~~p~~~~~~~~~~~~p~~~-----~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~ 291 (965)
.+.+..+-+..++........ ..|+++ +||||.|||+|||+.+|+|+.+|||+||+|++|+++|++++..
T Consensus 13 ~a~~~~p~g~~~~~~~~~~~~--~~p~~i~~a~G~~l~D~dG~~yiD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~--- 87 (433)
T PRK00615 13 EACQYFPGGVNSPVRACRSVG--ITPPIVSSASGDIFIDSLGKTFIDFCGSWGSLIHGHSHPKICDAIQQGAERGTS--- 87 (433)
T ss_pred HHHhhCCCCcCCCcccccccC--CCCceEEEeeeCEEEECCCCEEEEcccchhccccCCCCHHHHHHHHHHHHhCCC---
Confidence 344555555555544321110 245545 9999999999999999999999999999999999999988642
Q ss_pred CCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCc---cccccccC
Q psy8199 292 SNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGET---LGALAVTN 368 (965)
Q Consensus 292 ~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~---~~~~~~~~ 368 (965)
..++++...+|+++|.+.+|...++|+|++|||||++.|+|+||.| ++|.+|+.++++|||++ .++++.++
T Consensus 88 ~~~~~~~~~~la~~L~~~~~~~~~~v~f~~SGsEA~e~AiklAr~~------tgr~~ii~~~~~yHG~td~~~~~~~~~~ 161 (433)
T PRK00615 88 YGLTSEQEILFAEELFSYLGLEDHKIRFVSSGTEATMTAVRLARGI------TGRSIIIKFLGCYHGHADTLLQGISFSE 161 (433)
T ss_pred CCCCCHHHHHHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHHHh------hCCCEEEEEcCccCCCCcccCcccccCC
Confidence 3567899999999999999755689999999999999999999998 58999999999999998 56666665
Q ss_pred CcCcc--chh--cccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHH
Q psy8199 369 IQSFK--EIY--TSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIY 444 (965)
Q Consensus 369 ~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~ 444 (965)
..... ..+ .+...... .+.++|++++++.+.++.+++++||+|| +++++|.++|+++|
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~-----------------~~~~~d~~~l~~~l~~~~~~~aavI~Ep-v~~~~G~~~p~~~y 223 (433)
T PRK00615 162 TSLDTLTHLVDTDLAHPLTL-----------------SLPYNDFQIFQTVMNSLGHRVAGVIFEP-ICANMGVVLPKPGF 223 (433)
T ss_pred CCcCcCCCCCCCCCCCCCeE-----------------eCCCCCHHHHHHHHHhcCCceEEEEECC-CCCCCCcccCCHHH
Confidence 22100 000 00000011 1223678899999976667899999999 99999999999999
Q ss_pred HHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccc
Q psy8199 445 LKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLH 524 (965)
Q Consensus 445 l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~ 524 (965)
|++|+++|++||+++|+|||+||| |+|.+|+++++|+.||++||||+++|| +|+|++++++++++.+... ..+.+
T Consensus 224 l~~l~~lc~~~g~llI~DEv~tG~-R~G~~ga~~~~gv~PDi~~~gK~lggG-~p~~av~~~~~i~~~~~~~---~~~~~ 298 (433)
T PRK00615 224 IEGIIQTCRRTGSLSIMDEVVTGF-RVAQGGAAAIYHVKPDITVYGKILGGG-LPAAAVVAHKSIMDHLAPE---GTIFQ 298 (433)
T ss_pred HHHHHHHHHHcCCEEEEEcccccc-cccHhHHHHhcCCCCCeEEEcccccCC-cceeeeeecHHHHhhhcCC---CCccc
Confidence 999999999999999999999999 999999999999999999999999999 6999999999999988531 23468
Q ss_pred cCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcc-cC--CCceeeeeceeEEEEEEEeecCccc------
Q psy8199 525 SHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSL-IT--HPKIINFRQKGMIWAFDVIIEDPEQ------ 595 (965)
Q Consensus 525 ~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l-~~--~~~i~~v~g~G~~~~i~~~~~~~~~------ 595 (965)
++||++||++|++++++|++++++++.+++++++++|+++|+++ .+ ++ +..++ .|+|+++++. .+..+
T Consensus 299 ~~T~~g~p~~~aa~la~L~~i~~~~~~~~~~~~g~~l~~~l~~~~~~~g~~-v~~~r-~G~~~~i~~~-~~~~~~~~~~~ 375 (433)
T PRK00615 299 AGTLSGNPLAMAAGKASINLCREQGFYTQLSTLEQNFLSPIEEMIRSQGFP-VSLVR-YGSMFSFFFN-ENRPNNLAEAQ 375 (433)
T ss_pred CCCCcccHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHcCCC-eEEEe-eceEEEEEEe-CCCCCChHHHh
Confidence 89999999999999999999988889999999999999999887 33 44 66777 8999999997 22111
Q ss_pred --hhhHHHHHHHHHHHcCcEEeecC-CEEEEeCCcccCHHHHHHHHHhhhccccc
Q psy8199 596 --IETFSKKFFVAALKNELLLRPIG-NTVYLMPPYILNKNEIQHMTSAIFQTFNE 647 (965)
Q Consensus 596 --~~~~~~~~~~~l~~~Gi~~~~~~-~~lR~~p~~~~t~~~i~~~~~~l~~~~~~ 647 (965)
.......+...|.++||++.+.. ... ..+..+++++|+++++++.+++..
T Consensus 376 ~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~--~ls~~ht~~did~~~~a~~~~~~~ 428 (433)
T PRK00615 376 LSDIEAFQTFYQSAFSKGVYLSPSPFEAS--FLSSAHSMENLDYAQNVLIDSLEK 428 (433)
T ss_pred hCCHHHHHHHHHHHHHCCeeecCcccccc--ceecCCCHHHHHHHHHHHHHHHHH
Confidence 11234568899999999998743 222 334789999999999998876543
|
|
| >PRK04073 rocD ornithine--oxo-acid transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-54 Score=492.37 Aligned_cols=360 Identities=27% Similarity=0.454 Sum_probs=315.9
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhH
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGAS 325 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGse 325 (965)
+||||.|||+|||+.+|+|+.+|||+||+|++|+++|++++.+.+. .+.++...+|+++|+++.+ .++++|++||||
T Consensus 32 ~~l~d~~G~~~lD~~~g~~~~~lGh~~p~v~~ai~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~--~~~~~~~~SGse 108 (396)
T PRK04073 32 VWVKDPEGNRYMDMLSAYSAVNQGHRHPKIIQALKDQADKVTLTSR-AFHSDQLGPWYEKVAKLTG--KDMVLPMNTGAE 108 (396)
T ss_pred cEEEECCCCEEEEcCCCHHhccCCCCCHHHHHHHHHHHhhcccccc-ccCCHHHHHHHHHHHhcCC--CCeEEEcCChHH
Confidence 9999999999999999999999999999999999999998765542 4678889999999999875 579999999999
Q ss_pred HHHHHHHHHHHHHHh-cCC-CCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHH
Q psy8199 326 AVEVALKMSFHYWYN-KGF-LNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEI 403 (965)
Q Consensus 326 A~~~Al~~a~~~~~~-~g~-~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (965)
||+.|+|+|+.|++. +|. +++++||+++++|||++.+++++++.+.+...+.+..+++.++|.
T Consensus 109 A~e~Alk~a~~~~~~~~g~~~~r~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 173 (396)
T PRK04073 109 AVETAIKAARRWAYDVKGVEPNKAEIIACEGNFHGRTMAAVSLSSEEEYKRGFGPMLPGIKKIPY--------------- 173 (396)
T ss_pred HHHHHHHHHHHHhhhccCCCCCCCEEEEECCCcCCCCHHHHhhcCCcccccCCCCCCCCceEeCC---------------
Confidence 999999999998543 242 577899999999999999999999877666666666666666655
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCC
Q psy8199 404 ARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIW 483 (965)
Q Consensus 404 ~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~ 483 (965)
+|++++++++. +++++|++|| ++|++|.+.++++|+++|+++|++||+++|+||||+||||+|++++++++++.
T Consensus 174 --~d~~~l~~~i~---~~~~~viiep-~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~~~~ 247 (396)
T PRK04073 174 --GDLEALKAAIT---PNTAAFLVEP-IQGEAGINIPPEGFLKAARELCKEENVLFIADEIQTGLGRTGKLFACDWDNVT 247 (396)
T ss_pred --CCHHHHHHhcc---cCeEEEEEcC-ccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhCCCcCcHHHHhhhcCCC
Confidence 36788888774 4689999999 99999999999999999999999999999999999999999998888888999
Q ss_pred cceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Q psy8199 484 PDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITK 563 (965)
Q Consensus 484 pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~ 563 (965)
||+++|||++++|++|+|++++++++++.+.. ..+++||++||++|++++++|+.++++++.+++++++++|.+
T Consensus 248 pdi~~~sK~lg~gg~~ig~~~~~~~i~~~~~~------~~~~~t~~~~~~~~aaa~aaL~~~~~~~l~~~~~~~~~~l~~ 321 (396)
T PRK04073 248 PDMYILGKALGGGVFPISCVAANRDILGVFTP------GSHGSTFGGNPLACAVSIAALEVLEEEKLPERSLELGEYFKE 321 (396)
T ss_pred CCEEEecccccCCCCcceEEEEcHHHHhhhcC------CCCCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 99999999999988999999999999988754 247789999999999999999998878899999999999999
Q ss_pred HHHcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecC-CEEEEeCCcccCHHHHHHHHHhhh
Q psy8199 564 ALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG-NTVYLMPPYILNKNEIQHMTSAIF 642 (965)
Q Consensus 564 ~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~-~~lR~~p~~~~t~~~i~~~~~~l~ 642 (965)
.|+++ ..+.+..+++.|+|+.+++. + .+..+.+.|+++||++.+.+ +++||+||+.+++++++++++++.
T Consensus 322 ~L~~l-~~~~i~~~~~~g~~~~~~~~--~------~~~~~~~~l~~~Gv~~~~~~~~~iRi~p~l~~t~e~i~~~~~~l~ 392 (396)
T PRK04073 322 QLKEI-DNPMIKEVRGRGLFIGVELN--E------PARPYCEALKEEGLLCKETHETVIRFAPPLVITKEELDWAFEKIK 392 (396)
T ss_pred HHHhh-cCCcccceecceEEEEEEec--c------hHHHHHHHHHHCCeEEecCCCCEEEEECCcccCHHHHHHHHHHHH
Confidence 99887 34567788999999998875 1 13467788999999998765 799999999999999999999887
Q ss_pred cc
Q psy8199 643 QT 644 (965)
Q Consensus 643 ~~ 644 (965)
+.
T Consensus 393 ~~ 394 (396)
T PRK04073 393 AV 394 (396)
T ss_pred HH
Confidence 54
|
|
| >PRK01278 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-53 Score=484.12 Aligned_cols=361 Identities=31% Similarity=0.473 Sum_probs=316.8
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhH
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGAS 325 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGse 325 (965)
+|+||.|||+|||+.+|+|+++|||+||+|++|+++|++++.+.+ ..+.++...+++++|++..+ .++|+|++||+|
T Consensus 23 ~~~~d~dG~~~lD~~~g~~~~~lGh~~p~v~~a~~~~~~~~~~~~-~~~~~~~~~~la~~l~~~~~--~~~v~~~~sGse 99 (389)
T PRK01278 23 VWLIDEDGERYLDFASGIAVNSLGHAHPHLVEALKEQAEKLWHVS-NLYRIPEQERLAERLVENSF--ADKVFFTNSGAE 99 (389)
T ss_pred CEEEECCCCEEEECCccHhhccCCCCCHHHHHHHHHHHHhcCccc-cccCChHHHHHHHHHHhhCC--CCEEEEcCCcHH
Confidence 999999999999999999999999999999999999998865543 23578899999999999874 579999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHH
Q psy8199 326 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIAR 405 (965)
Q Consensus 326 A~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (965)
|++.|+++++.|+...|.+++.+||+++++|||++.+++++++.+.+...+.+..+++.++|.
T Consensus 100 A~~~al~~ar~~~~~~G~~~r~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 162 (389)
T PRK01278 100 AVECAIKTARRYHYGKGHPERYRIITFEGAFHGRTLATIAAGGQEKYLEGFGPLVPGFDQVPF----------------- 162 (389)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCcHHHHhccCChhhcccCCCCCCCceEeCC-----------------
Confidence 999999999999877787888999999999999999999998876555444444444544444
Q ss_pred HHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcc
Q psy8199 406 CAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPD 485 (965)
Q Consensus 406 ~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pD 485 (965)
+|++++++++. +++++|++|| +++++|...++++++++|+++|++||+++|+||||+||||+|++++++++++.||
T Consensus 163 ~d~~~l~~~l~---~~~~avivep-~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pd 238 (389)
T PRK01278 163 GDIEALKAAIT---PNTAAILIEP-IQGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQCGMGRTGKLFAHEWAGVTPD 238 (389)
T ss_pred CCHHHHHHhhC---CCeEEEEEec-ccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCcceeecccCCCCC
Confidence 36788888885 4799999999 8999998899999999999999999999999999999999999888888899999
Q ss_pred eeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Q psy8199 486 FLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKAL 565 (965)
Q Consensus 486 ivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L 565 (965)
++||||++++| +|+|++++++++++.+.. ..+++||++||++|++++++|+.++++++.+++++++++++++|
T Consensus 239 i~t~sK~l~~G-~~ig~~~~~~~~~~~~~~------~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~l 311 (389)
T PRK01278 239 IMAVAKGIGGG-FPLGACLATEEAAKGMTP------GTHGSTYGGNPLAMAVGNAVLDVILAPGFLDNVQRMGLYLKQKL 311 (389)
T ss_pred EEEEehhccCC-cceEEEEEcHHHHhccCC------CCCCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 99999999988 899999999999887754 35789999999999999999999987788999999999999999
Q ss_pred Hcc-cCCC-ceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecC-CEEEEeCCcccCHHHHHHHHHhhh
Q psy8199 566 TSL-ITHP-KIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG-NTVYLMPPYILNKNEIQHMTSAIF 642 (965)
Q Consensus 566 ~~l-~~~~-~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~-~~lR~~p~~~~t~~~i~~~~~~l~ 642 (965)
+++ .+++ .+..+++.|+++++++. .+ ...+.+.|+++||++.|.+ +.+||+||+++++++++++++++.
T Consensus 312 ~~l~~~~~~~~~~v~g~G~~~~i~~~-~~-------~~~~~~~l~~~GV~~~p~~~~~lR~~p~~~~~~~~i~~~l~~l~ 383 (389)
T PRK01278 312 EGLVDRFPDVIEEVRGKGLLLGLKCV-VP-------NRDLVQALRDEGLLTVGAGDNVVRLLPPLIITEEEIDEALERLE 383 (389)
T ss_pred HHHHhhCCCceeeEecccEEEEEEEe-cC-------HHHHHHHHHHCCeEEeecCCCEEEEeCCcccCHHHHHHHHHHHH
Confidence 887 4566 57789999999998875 11 3468888999999999875 799999999999999999999987
Q ss_pred ccc
Q psy8199 643 QTF 645 (965)
Q Consensus 643 ~~~ 645 (965)
+.+
T Consensus 384 ~~l 386 (389)
T PRK01278 384 RAA 386 (389)
T ss_pred HHH
Confidence 654
|
|
| >KOG1403|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-54 Score=423.48 Aligned_cols=390 Identities=21% Similarity=0.349 Sum_probs=322.7
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhH
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGAS 325 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGse 325 (965)
.|++|+.|++|||++++ +...||+||+|++|...|+...+ ++.++.+....+.|++|...+| +++-++|+|||||
T Consensus 39 QYmfDE~g~~yLDCInN--VaHvghchp~VV~A~~kQmat~~--tN~RFlhd~lv~cA~~l~stlP-eLsvc~F~NSGSE 113 (452)
T KOG1403|consen 39 QYMFDEEGTRYLDCINN--VAHVGHCHPEVVRAGAKQMATIS--TNNRFLHDELVQCARTLTSTLP-ELSVCFFVNSGSE 113 (452)
T ss_pred ceeeccCcccHHHHhhh--hhhcccCCHHHHHHHHHHHhHhc--ccchhhHHHHHHHHHHHhhcCC-CceEEEEecCCch
Confidence 89999999999999988 67889999999999999998763 3467889999999999999998 5999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChh---H
Q psy8199 326 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSAN---E 402 (965)
Q Consensus 326 A~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 402 (965)
||++|+|+||+| ++...+|+.+.+|||.....+-++--...+.....-+..+...|.|+.++........ .
T Consensus 114 ANDLALRLAR~f------tkhqDvItldHAYHGHl~s~mE~SPYKF~~g~~v~kpd~VHVAPcPDvyrGK~r~~~~~~a~ 187 (452)
T KOG1403|consen 114 ANDLALRLARNF------TKHQDVITLDHAYHGHLQSVMEVSPYKFNQGGGVAKPDYVHVAPCPDVYRGKFRDKMYPDAD 187 (452)
T ss_pred hhHHHHHHHHhh------cccCceEEEechhccceeeeeeccceeccCCCCcCCCceeEecCCccccccccccccCCccc
Confidence 999999999999 5888999999999999777776664322222222222334556777766554322111 1
Q ss_pred HHHHHHHHHHHHHHh---CCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccc-ccccc
Q psy8199 403 IARCAIFDLEILLKK---NHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK-FFACE 478 (965)
Q Consensus 403 ~~~~d~~~le~~l~~---~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~-~~~~~ 478 (965)
.+..-.+.+++++.+ .+..+||++.|. .|+-||.+.||++|++.+.+..+.+|-++|.||||+||||.|+ +|+++
T Consensus 188 ~~~~Yad~vk~I~~d~~~~g~gvAAfiAEs-lQSCGGQiiPPagYFq~Va~~Vr~aGGv~IaDEVQvGFGRvG~hyWafq 266 (452)
T KOG1403|consen 188 MGALYADPVKEICQDQLAKGQGVAAFIAES-LQSCGGQIIPPAGYFQAVADAVRSAGGVCIADEVQVGFGRVGSHYWAFQ 266 (452)
T ss_pred chhhhhhHHHHHHHHHHhcCCcHHHHHHHH-HHhcCCcccCchhHHHHHHHHHhcCCCeEEeehhhhcccccchhhhhhh
Confidence 111223445555533 256799999999 9999999999999999999999999999999999999999997 79999
Q ss_pred ccCCCcceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHH
Q psy8199 479 HAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDM 558 (965)
Q Consensus 479 ~~~~~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~ 558 (965)
.+++.|||+|++|.||+| .|++++..+++++++|... .+.+..||+|||++||+++++|++++++++.++..+.+
T Consensus 267 ~y~fiPDIVtmgKpmGNG-hPVa~VattkeIA~Af~at----gv~YFNTyGGnPVsCAv~laVm~v~e~E~Lq~ha~~vG 341 (452)
T KOG1403|consen 267 TYNFIPDIVTMGKPMGNG-HPVAAVATTKEIAQAFHAT----GVEYFNTYGGNPVSCAVGLAVMRVCEDENLQEHAQQVG 341 (452)
T ss_pred hhccccchheecccCCCC-CeeeEEeccHHHHHHhccc----cceehhccCCCchhHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 999999999999999999 5999999999999999752 24567999999999999999999999999999999999
Q ss_pred HHHHHHHHcc-cCCCceeeeeceeEEEEEEEeecCccch---hhHHHHHHHHHHHc-CcEEee---cCCEEEEeCCcccC
Q psy8199 559 KKITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDPEQI---ETFSKKFFVAALKN-ELLLRP---IGNTVYLMPPYILN 630 (965)
Q Consensus 559 ~~l~~~L~~l-~~~~~i~~v~g~G~~~~i~~~~~~~~~~---~~~~~~~~~~l~~~-Gi~~~~---~~~~lR~~p~~~~t 630 (965)
++|...|+++ .++++|+++||.|+|+++++. .|..+. ...+..+..+|++. ||++.. ..|.+.|.||.+++
T Consensus 342 ~~L~~lL~~~k~kh~~IGDvRGvGLFiGIdLV-kD~~tRtP~tk~A~~~v~rlke~y~VLlsaDGPh~NilKiKPPmCFn 420 (452)
T KOG1403|consen 342 EKLEVLLRRLKQKHECIGDVRGVGLFIGIDLV-KDRKTRTPDTKEAHWVVNRLKELYRVLLSADGPHRNILKIKPPMCFN 420 (452)
T ss_pred HHHHHHHHHHhhhccceeccccceEEEeeeee-cccccCCCcHHHHHHHHHHHHHhhhEEEecCCCCCceeecCCCcccC
Confidence 9999999988 789999999999999999998 554332 33455666777754 688864 44899999999999
Q ss_pred HHHHHHHHHhhhcccccHHHHHH
Q psy8199 631 KNEIQHMTSAIFQTFNELDEVIN 653 (965)
Q Consensus 631 ~~~i~~~~~~l~~~~~~~~e~l~ 653 (965)
++..++++..+.+.+..+++.+.
T Consensus 421 eena~e~v~~ld~iLT~mee~~~ 443 (452)
T KOG1403|consen 421 EENADEFVLGLDEILTVMEERLA 443 (452)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHh
Confidence 99999999998887776666543
|
|
| >PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-51 Score=469.07 Aligned_cols=365 Identities=26% Similarity=0.448 Sum_probs=313.7
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhH
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGAS 325 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGse 325 (965)
+||||.||++||||.+|+|+.+|||+||+|.+|+.+++++..+... .+.++...+++++|++..+ .++++|++||+|
T Consensus 32 ~~~~d~dG~~~iD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~--~~~~~~~~sGse 108 (403)
T PRK05093 32 SRVWDQQGKEYIDFAGGIAVTALGHCHPALVKALKEQGEKLWHISN-VFTNEPALRLAKKLIDATF--AERVFFANSGAE 108 (403)
T ss_pred CEEEeCCCCEEEEcCcCHHhccCCCCCHHHHHHHHHHHHhcCcccC-ccCCHHHHHHHHHHHhhCC--CCEEEEeCchHH
Confidence 9999999999999999999999999999999999999987644332 3567888999999999874 579999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHH
Q psy8199 326 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIAR 405 (965)
Q Consensus 326 A~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (965)
||+.|+|++|.++..++.+++.+||+++++|||++.+++++++.+.+...+.+...++.++|.
T Consensus 109 A~e~a~klar~~~~~~~~~~~~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 171 (403)
T PRK05093 109 ANEAAFKLARRYACDRHGPEKTEIIAFHNSFHGRTLFTVSVGGQPKYSDGFGPKPADITHVPF----------------- 171 (403)
T ss_pred HHHHHHHHHHHHHhhcCCCCCCeEEEEcCCcCCchhhhHhhcCChhhhhcCCCCCCCcEEeCC-----------------
Confidence 999999999998755544678899999999999999998888765544444444444555544
Q ss_pred HHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcc
Q psy8199 406 CAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPD 485 (965)
Q Consensus 406 ~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pD 485 (965)
+|++++++.+. +++++|++|| +++++|.+.++++|+++|+++|++||+++|+||||+|||++|++++++++++.||
T Consensus 172 ~d~~~l~~~l~---~~~aaiiiep-~~~~gg~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pd 247 (403)
T PRK05093 172 NDLAAVKAVID---DHTCAVVVEP-IQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGMGRTGDLFAYMHYGVTPD 247 (403)
T ss_pred CCHHHHHHHhc---CCeEEEEEec-ccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchhhhhcCCCCC
Confidence 47888888884 4689999999 9999999889999999999999999999999999999999998888888899999
Q ss_pred eeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Q psy8199 486 FLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKAL 565 (965)
Q Consensus 486 ivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L 565 (965)
+++|||++++| +|+|++++++++++.+.. ..+++||+++|++|++++++|+.+.++++.++++++++++.+.|
T Consensus 248 i~s~sK~l~~G-~rig~vv~~~~i~~~l~~------~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~L 320 (403)
T PRK05093 248 ILTSAKALGGG-FPIGAMLTTAEIASHFKV------GTHGSTYGGNPLACAVAEAVFDIINTPEVLEGVKARRQRFVDGL 320 (403)
T ss_pred EEEecccccCC-cceEEEEEcHHHHhhcCC------CCCCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH
Confidence 99999999988 899999999999988864 34678999999999999999999887889999999999999999
Q ss_pred Hcc-cCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecC-CEEEEeCCcccCHHHHHHHHHhhhc
Q psy8199 566 TSL-ITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG-NTVYLMPPYILNKNEIQHMTSAIFQ 643 (965)
Q Consensus 566 ~~l-~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~-~~lR~~p~~~~t~~~i~~~~~~l~~ 643 (965)
+++ .+.+.+..+++.|+++++.+. .+ ....+.+++..|+++||++.+.+ +.+||+|++.+++++++++++++.+
T Consensus 321 ~~~~~~~~~~~~~~~~G~~~~~~l~-~~---~~~~~~~~~~~l~~~Gv~v~~~g~~~lRl~~~~~~~~~~i~~~~~~l~~ 396 (403)
T PRK05093 321 QKINQKYGVFSEIRGMGLLIGAELK-PQ---YKGRARDFLNAAAEEGVMVLVAGPDVLRFAPSLVIEEADIDEGLARFEK 396 (403)
T ss_pred HHHHhhCCCeEeEeeCceEEEEEec-Cc---chhHHHHHHHHHHHCCeEEecCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 887 445566788999999999885 11 01134568889999999999866 7999999999999999999999876
Q ss_pred cc
Q psy8199 644 TF 645 (965)
Q Consensus 644 ~~ 645 (965)
.+
T Consensus 397 ~l 398 (403)
T PRK05093 397 AV 398 (403)
T ss_pred HH
Confidence 54
|
|
| >TIGR01885 Orn_aminotrans ornithine aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-51 Score=465.84 Aligned_cols=368 Identities=28% Similarity=0.451 Sum_probs=315.2
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhH
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGAS 325 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGse 325 (965)
+||||.||++||||.+++++.++||+||+|++|++++++++++.+. .+.++...+++++|++.++ .++++|++||++
T Consensus 29 ~~~~~~~g~~~lD~~s~~~~~~~Gh~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~--~~~~~~~~SGs~ 105 (401)
T TIGR01885 29 VHVWDVEGKRYLDFLSAYSAVNQGHCHPKIVKALTEQAQKLTLSSR-AFYNDVFGEFAEYVTKLFG--YDKVLPMNTGAE 105 (401)
T ss_pred CEEEeCCCCEEEEcccCHhhccCCCCCHHHHHHHHHHHHhcccccc-ccCCHHHHHHHHHHHhhcC--CCEEEEeCccHH
Confidence 8999999999999999999999999999999999999988765432 3468889999999999984 689999999999
Q ss_pred HHHHHHHHHHHHHHhc-C-CCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHH
Q psy8199 326 AVEVALKMSFHYWYNK-G-FLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEI 403 (965)
Q Consensus 326 A~~~Al~~a~~~~~~~-g-~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (965)
||+.|+++++.++..+ | .+++.+|++++++|||++.+++++++.+.+...+.+..++...+|.
T Consensus 106 A~e~ai~~a~~~~~~~~~~~~~~~~i~~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 170 (401)
T TIGR01885 106 AVETAIKLARKWGYKVKGIPENQAIIVSAKGNFHGRTLGAISMSTDPDSRTNFGPYVPGFKKIPY--------------- 170 (401)
T ss_pred HHHHHHHHHHHHhhhhcCCCCCCCEEEEECCCcCcccHHHHhCcCCcccccccCCCCCCceEeCC---------------
Confidence 9999999999986443 2 2457889999999999999999998765544444444444444444
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCC
Q psy8199 404 ARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIW 483 (965)
Q Consensus 404 ~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~ 483 (965)
+|+++|++++++.++++++|++|| +++++|.+.|+++||++|+++|++||+++|+||||+||||+|++++.+++++.
T Consensus 171 --~d~~~le~~l~~~~~~~~avi~E~-v~~~~G~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~g~~G~~~~~~~~~~~ 247 (401)
T TIGR01885 171 --NNLEALEEALEDHGPNVCAFIVEP-IQGEAGVVVPDDGYLKKVRELCTKHNVLLIADEIQTGLGRTGKLLCVDHENVK 247 (401)
T ss_pred --CCHHHHHHHHHhcCCCEEEEEEeC-ccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhhHHhhcCCC
Confidence 467889998876667899999999 99999999999999999999999999999999999999999998888888999
Q ss_pred cceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Q psy8199 484 PDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITK 563 (965)
Q Consensus 484 pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~ 563 (965)
||++|+||+++||++|+|++++++++++.+.. ..+++||++||+++++++++|+.++++++.++++++++++++
T Consensus 248 ~di~~~gK~l~~g~~~ig~v~~~~~i~~~~~~------~~~~~t~~~~p~~~~aa~a~L~~i~~~~l~~~~~~~~~~~~~ 321 (401)
T TIGR01885 248 PDIVLLGKALSGGVYPVSAVLADDDVMLTIKP------GEHGSTYGGNPLACAVAVAALEVLEEEKLAENAEKLGEIFRD 321 (401)
T ss_pred CCEEEeeccccCCCCCcEEEEEcHHHHhhccC------CCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 99999999999988999999999999987754 236689999999999999999999877889999999999999
Q ss_pred HHHcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecC-CEEEEeCCcccCHHHHHHHHHhhh
Q psy8199 564 ALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG-NTVYLMPPYILNKNEIQHMTSAIF 642 (965)
Q Consensus 564 ~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~-~~lR~~p~~~~t~~~i~~~~~~l~ 642 (965)
+|+++. .+.+..++|.|+|+.+.+. +... ...+..+.+.|.++||++.|.+ +.+||+||+.+++++++++++++.
T Consensus 322 ~L~~l~-~~~~~~~~g~g~~~~i~~~--~~~~-~~~~~~l~~~l~~~Gv~v~~~~~~~lRi~p~l~~t~~~i~~~l~~l~ 397 (401)
T TIGR01885 322 QLKKLP-KPIITEVRGRGLLNAIVID--ESKT-GRTAWDLCLKLKEKGLLAKPTHGNIIRLAPPLVITEEQLDEGLEIIK 397 (401)
T ss_pred HHHhcc-CCceeEEeecCeeEEEEec--cCcc-hhHHHHHHHHHHhCCEEEEecCCCEEEEeCCccCCHHHHHHHHHHHH
Confidence 999873 3556788999999999885 2111 1134578889999999998865 799999999999999999999987
Q ss_pred cc
Q psy8199 643 QT 644 (965)
Q Consensus 643 ~~ 644 (965)
+.
T Consensus 398 ~~ 399 (401)
T TIGR01885 398 KV 399 (401)
T ss_pred HH
Confidence 54
|
This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis. |
| >PRK08088 4-aminobutyrate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-51 Score=463.98 Aligned_cols=379 Identities=29% Similarity=0.454 Sum_probs=321.3
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCC-CeEEEcCChh
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKL-GHCFYGSDGA 324 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~-~~v~~~~sGs 324 (965)
+||||.||++|||+.+|+|+.++||+||+|.+|+.+|++++.+.....+.++...+++++|++..|.+. ++++|++||+
T Consensus 33 ~~l~d~dG~~~lD~~~g~~~~~lGh~~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~~~f~~sGs 112 (425)
T PRK08088 33 CRVWDVEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEKMNQKVPGDFAKKTLLVTTGS 112 (425)
T ss_pred CEEEeCCCCEEEEcCCchhhcCCCCCCHHHHHHHHHHHhhCCCccccccCCHHHHHHHHHHHHhCCCCCCCEEEEeCCcH
Confidence 999999999999999999999999999999999999999876544334557888999999999887555 6999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCc-CccchhcccCCCeeEecCCCCCCCCCCCChhHH
Q psy8199 325 SAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQ-SFKEIYTSLLNKTYIITTPDSRNINKGNSANEI 403 (965)
Q Consensus 325 eA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (965)
||++.|+|+|+.+ +++.+||+++++|||++.+++++++.. .+...+.+...++.+++.|..... .+
T Consensus 113 ea~e~Alklar~~------~~r~~iv~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~---~~---- 179 (425)
T PRK08088 113 EAVENAVKIARAA------TKRSGVIAFTGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHG---VS---- 179 (425)
T ss_pred HHHHHHHHHHHHH------hCCCeEEEECCccCCccHHHHHhhCCCCccccCCCCCCCCcEEcCCCccccC---cc----
Confidence 9999999999998 578899999999999999999988742 345455555556666665532221 11
Q ss_pred HHHHHHHHHHHHHh--CCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccC
Q psy8199 404 ARCAIFDLEILLKK--NHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAE 481 (965)
Q Consensus 404 ~~~d~~~le~~l~~--~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~ 481 (965)
...++++|+++++. .++++++|++|| +++++|.+.++++|+++|+++|++||+++|.||+|+||||+|.++++++++
T Consensus 180 ~~~~~~~l~~~l~~~~~~~~~aavi~Ep-i~~~~G~~~~~~~~~~~l~~l~~~~~~~lI~Dev~~g~g~~g~~~~~~~~~ 258 (425)
T PRK08088 180 EDDAIASIERIFKNDAAPEDIAAIIIEP-VQGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQTGAGRTGTLFAMEQMG 258 (425)
T ss_pred HHHHHHHHHHHHHhccCCCceEEEEECc-ccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcchhHHhhcC
Confidence 11347788888863 357899999999 999999999999999999999999999999999999999999988888889
Q ss_pred CCcceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q psy8199 482 IWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKI 561 (965)
Q Consensus 482 ~~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l 561 (965)
+.||+.+|||++++| +|+|++++++++++.+.. ..+++|+++||++|+++.++|+.+..+++.+++++.++++
T Consensus 259 ~~pdi~s~sK~l~~G-~rig~v~~~~~~~~~~~~------~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~ 331 (425)
T PRK08088 259 VAADLTTFAKSIAGG-FPLAGVTGRAEVMDAIAP------GGLGGTYAGNPIACAAALAVLKVFEQENLLQKANALGEKL 331 (425)
T ss_pred CCCCEEEEeccccCC-CcceeeEecHHHHhhcCC------CCCCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999999999999988 799999999999998865 2477899999999999999999988888999999999999
Q ss_pred HHHHHcc-cCCCceeeeeceeEEEEEEEeecCcc---chhhHHHHHHHHHHHcCcEEeecC---CEEEEeCCcccCHHHH
Q psy8199 562 TKALTSL-ITHPKIINFRQKGMIWAFDVIIEDPE---QIETFSKKFFVAALKNELLLRPIG---NTVYLMPPYILNKNEI 634 (965)
Q Consensus 562 ~~~L~~l-~~~~~i~~v~g~G~~~~i~~~~~~~~---~~~~~~~~~~~~l~~~Gi~~~~~~---~~lR~~p~~~~t~~~i 634 (965)
++.|.++ .++|.+..++|.|+|+++.+. .+.. +.......+.+.|.++||++.+.+ +.+||+||+.++++++
T Consensus 332 ~~~l~~l~~~~~~~~~v~g~G~~~~l~l~-~~~~~~~p~~~~~~~l~~~~~~~Gv~~~~~~~~~~~iRl~~~~~~t~~ei 410 (425)
T PRK08088 332 KDGLLAIAEKHPEIGDVRGLGAMIAIELF-EDGDHSKPNAKLTAQIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQI 410 (425)
T ss_pred HHHHHHHHHhCCCeEEEeccceEEEEEEe-cCCCCCCCCHHHHHHHHHHHHhCCCEEecCCCCCCEEEEECCCCcCHHHH
Confidence 9999988 557778889999999999985 2221 122345678899999999887643 7999999999999999
Q ss_pred HHHHHhhhcccc
Q psy8199 635 QHMTSAIFQTFN 646 (965)
Q Consensus 635 ~~~~~~l~~~~~ 646 (965)
++.++++.+++.
T Consensus 411 ~~~i~~l~~~l~ 422 (425)
T PRK08088 411 RQGLEIIAQCFD 422 (425)
T ss_pred HHHHHHHHHHHH
Confidence 999999876553
|
|
| >PRK03244 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-51 Score=465.20 Aligned_cols=357 Identities=27% Similarity=0.479 Sum_probs=311.0
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCC-CCeEEEcCChh
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYK-LGHCFYGSDGA 324 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~-~~~v~~~~sGs 324 (965)
+|+||.|||+||||.+++++++|||+||+|.+|+.+++++..+.. ..+.++...+|+++|++.++.. .++++|++||+
T Consensus 35 ~~~~d~dg~~~lD~~s~~~~~~lG~~~p~v~~ai~~~~~~~~~~~-~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sgs 113 (398)
T PRK03244 35 AVVWDVDGKEYLDLLGGIAVNALGHAHPAVVEAVTRQLATLGHVS-NLFATEPQIALAERLVELLGAPEGGRVFFCNSGA 113 (398)
T ss_pred cEEEECCCCEEEECCcCHhhccCCCCCHHHHHHHHHHHHhccCcc-CccCCHHHHHHHHHHHHhCCCCCCCEEEEeCchH
Confidence 899999999999999999999999999999999999999865432 3467788899999999998732 47999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHH
Q psy8199 325 SAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIA 404 (965)
Q Consensus 325 eA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (965)
||++.|+++++.. +++++|.++++|||++.+++++++...+...+.+...++.++|.
T Consensus 114 ea~~~al~~~~~~-------g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------- 170 (398)
T PRK03244 114 EANEAAFKLARLT-------GRTKIVAAEGGFHGRTMGALALTGQPAKRAPFEPLPGGVEHVPY---------------- 170 (398)
T ss_pred HHHHHHHHHHHHH-------CCCeEEEECCCcCCccHHHHhccCCcccccCCCCCCCCceEeCC----------------
Confidence 9999999999873 67889999999999999999888765544445444445555554
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCc
Q psy8199 405 RCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWP 484 (965)
Q Consensus 405 ~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~p 484 (965)
+|++++++++. +++++|++|| ++|++|.+.|+++|+++|+++|++||+++|+||+|+||||+|++++++++++.|
T Consensus 171 -~d~~~l~~~~~---~~~~aviiep-~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~~~~~~~~~~~p 245 (398)
T PRK03244 171 -GDVDALAAAVD---DDTAAVFLEP-IQGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQTGIGRTGAWFAHQHDGVTP 245 (398)
T ss_pred -CCHHHHHHhhc---CCeEEEEEec-ccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCcccchHHhhhhhCCCC
Confidence 36788888773 4789999999 899999999999999999999999999999999999999999988888899999
Q ss_pred ceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Q psy8199 485 DFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKA 564 (965)
Q Consensus 485 Divt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~ 564 (965)
|++||||++++| +|+|++++++++++.+.. ..+++||++||++|++++++|+++.++++.+++++++++|++.
T Consensus 246 Di~t~sK~l~~G-~~ig~~~~~~~~~~~~~~------~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~ 318 (398)
T PRK03244 246 DVVTLAKGLGGG-LPIGACLAFGPAADLLTP------GLHGSTFGGNPVACAAALAVLDTIASEGLLENAERLGEQLRAG 318 (398)
T ss_pred CEEEEchhhhCC-cccEEEEEcHHHHhhccC------CCCcCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 999999999988 799999999999888754 3578899999999999999999988888999999999999999
Q ss_pred HHcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecC-CEEEEeCCcccCHHHHHHHHHhhhc
Q psy8199 565 LTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG-NTVYLMPPYILNKNEIQHMTSAIFQ 643 (965)
Q Consensus 565 L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~-~~lR~~p~~~~t~~~i~~~~~~l~~ 643 (965)
|+++ .++.+..+++.|+|+++++. .+ .+..+.+.|.++||++.+.+ +.+||+||+.+++++++++++++.+
T Consensus 319 L~~~-~~~~~~~v~g~g~~~~i~~~-~~------~~~~~~~~l~~~Gv~~~~~~~~~iR~~p~~~~t~~~i~~~~~~l~~ 390 (398)
T PRK03244 319 IEAL-GHPLVDHVRGRGLLLGIVLT-AP------VAKAVEAAAREAGFLVNAVAPDVIRLAPPLIITDAQVDAFVAALPA 390 (398)
T ss_pred HHhc-CCCceeeEeeccEEEEEEEe-cc------HHHHHHHHHHHCCeEEeecCCCEEEEECCCcCCHHHHHHHHHHHHH
Confidence 9886 35667789999999999985 11 24568889999999998855 8999999999999999999999887
Q ss_pred ccc
Q psy8199 644 TFN 646 (965)
Q Consensus 644 ~~~ 646 (965)
.+.
T Consensus 391 ~l~ 393 (398)
T PRK03244 391 ILD 393 (398)
T ss_pred HHH
Confidence 654
|
|
| >PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-51 Score=466.87 Aligned_cols=400 Identities=21% Similarity=0.259 Sum_probs=318.8
Q ss_pred cccccccccccccccCcccccccccCCCce-----eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccc
Q psy8199 216 RQALHAYKLGLIHPKNNLKLKWRINLPDDI-----SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVM 290 (965)
Q Consensus 216 ~~~Lha~~l~f~~p~~~~~~~~~~~~p~~~-----~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~ 290 (965)
+.+-|-.+-++.+|...+.... ..|+.+ +||||.||++|||+.+|+|+.+|||+||+|++|+.+|+++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~a~G~~l~d~dG~~~lD~~~g~~~~~lGh~~p~i~~a~~~~~~~~~--- 83 (426)
T PRK00062 9 ERAKKLIPGGVNSPVRAFKSVG--GTPRFIERAKGAYLYDVDGNEYIDYVGSWGPMILGHAHPEVVEAVIEAAEKGL--- 83 (426)
T ss_pred HHHHHhCCCCcCCcccccCCCC--CCCeEEEeCcCCEEEeCCCCEEEEcccchhhhhcCCCCHHHHHHHHHHHHhCC---
Confidence 3345555666666665554321 124444 999999999999999999999999999999999999998843
Q ss_pred cCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCc
Q psy8199 291 LSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQ 370 (965)
Q Consensus 291 ~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~ 370 (965)
...+.++...+|+++|++.+| +.++|+|++||+|||+.|+|+++.+ +++++||+++++|||++.++.+.++..
T Consensus 84 ~~~~~~~~~~~la~~L~~~~~-~~~~v~~~~sGseA~e~Aik~a~~~------~g~~~ii~~~~~yHG~t~~~~~~~~~~ 156 (426)
T PRK00062 84 SFGAPTELEVELAELVIELVP-SIEMVRMVNSGTEATMSAIRLARGY------TGRDKIIKFEGCYHGHADSLLVKAGSG 156 (426)
T ss_pred cCCCCCHHHHHHHHHHHHhCC-CCCEEEEecCHHHHHHHHHHHHHHH------hCCCeEEEEcCccCCchhhhhhccCcc
Confidence 235678889999999999886 5789999999999999999999998 478899999999999997777765422
Q ss_pred CccchhcccCCCee-EecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHH
Q psy8199 371 SFKEIYTSLLNKTY-IITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVR 449 (965)
Q Consensus 371 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~ 449 (965)
.... ..+...... .++ +... .+.++|++++++.+.+..+++++||+|| +++++|.+.++++||++|+
T Consensus 157 ~~~~-~~~~~~~~~~~~~-~~~~---------~~~~~d~~~l~~~i~~~~~~~aaiivEp-v~~~~G~~~~~~~~l~~l~ 224 (426)
T PRK00062 157 AATL-GLPDSPGVPEDFA-KHTL---------TAPYNDLEAVEELFEEYGDEIAAVIVEP-VAGNMGVVPPKPGFLEGLR 224 (426)
T ss_pred cccc-CCCCCCCCCcccc-cceE---------EcCCCCHHHHHHHHHhCCCcEEEEEEeC-CcCCCCCcCCCHHHHHHHH
Confidence 1110 001111100 000 0000 0112578899988876667899999999 9999999999999999999
Q ss_pred HHHHhcCCeEEEeccccCCCcccccccccccCCCcceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCC
Q psy8199 450 EICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYS 529 (965)
Q Consensus 450 ~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~ 529 (965)
++|++||+++|+||||+|| |+|.+++++++++.||+++|||++++| ||+|++++++++++.+... ..+.+++||+
T Consensus 225 ~l~~~~~~llI~DEv~~G~-r~g~~~~~~~~~~~pDi~~~gK~l~~G-~p~ga~~~~~~i~~~~~~~---~~~~~~~T~~ 299 (426)
T PRK00062 225 ELCDEHGALLIFDEVMTGF-RVALGGAQGYYGVTPDLTTLGKIIGGG-LPVGAFGGRREIMEQLAPL---GPVYQAGTLS 299 (426)
T ss_pred HHHHHcCCEEEEeechhcc-ccCCccHHHHhCCCcchHhhhhHhhCC-CcceeeeEHHHHHHhhccC---CCceecccCc
Confidence 9999999999999999999 888888888899999999999999988 8999999999999988531 2245778999
Q ss_pred CCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcc-cCCCceeeeeceeEEEEEEEeecCcc-------chhhHHH
Q psy8199 530 GNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDPE-------QIETFSK 601 (965)
Q Consensus 530 ~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l-~~~~~i~~v~g~G~~~~i~~~~~~~~-------~~~~~~~ 601 (965)
+||++|++++++|+.++++++.+++++++++++++|+++ .+++.+..+++.|+|+++++...... .....+.
T Consensus 300 ~~p~~~aaa~a~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vrg~G~~~~i~l~~~~~~~~~~~~~~~~~~~~ 379 (426)
T PRK00062 300 GNPLAMAAGLATLKLLKEPGFYEELEALTKRLAEGLKEAAKKAGIPLTVNRVGSMFGLFFTDEPVTNYADAKKSDTERFA 379 (426)
T ss_pred CCHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCceEEEEecceEEEEEecCCCcchhhhccccHHHHH
Confidence 999999999999999988889999999999999999887 55676778999999999999621110 0112345
Q ss_pred HHHHHHHHcCcEEeecC-CEEEEeCCcccCHHHHHHHHHhhhcccc
Q psy8199 602 KFFVAALKNELLLRPIG-NTVYLMPPYILNKNEIQHMTSAIFQTFN 646 (965)
Q Consensus 602 ~~~~~l~~~Gi~~~~~~-~~lR~~p~~~~t~~~i~~~~~~l~~~~~ 646 (965)
.+.+.|+++||++.+.+ +.++++ +++++++++++++++.+++.
T Consensus 380 ~i~~~l~~~Gv~v~~~~~~~~~~~--~~~t~~ei~~~~~~l~~~l~ 423 (426)
T PRK00062 380 RFFHAMLDEGVYLAPSQFEAGFVS--AAHTDEDIEKTLEAARKAFA 423 (426)
T ss_pred HHHHHHHHCCeEeecCCcCceeee--ccCCHHHHHHHHHHHHHHHH
Confidence 78899999999998865 567764 89999999999999876553
|
|
| >TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-51 Score=469.31 Aligned_cols=365 Identities=22% Similarity=0.330 Sum_probs=301.9
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhH
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGAS 325 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGse 325 (965)
+||||.|||+|||+.+|+|+.++||+||+|++|+++|++++.+ ..++++...+|+++|++.++ ..++|+|++||||
T Consensus 40 ~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~---~~~~~~~~~~lae~l~~~~~-~~~~v~~~~sGse 115 (423)
T TIGR00713 40 AYLYDVDGNEYIDYVLSWGPLILGHAHPRVVEAVKEALERGTS---YGAPTEAEILLAKEIISRVP-SVEMVRFVNSGTE 115 (423)
T ss_pred CEEEeCCCCEEEEccccccccccCCCCHHHHHHHHHHHHhCCc---CCCCCHHHHHHHHHHHHhCC-cccEEEEeCCHHH
Confidence 9999999999999999999999999999999999999988643 24578889999999999987 3579999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCc--CccchhcccC-----CCeeEecCCCCCCCCCCC
Q psy8199 326 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQ--SFKEIYTSLL-----NKTYIITTPDSRNINKGN 398 (965)
Q Consensus 326 A~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~--~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 398 (965)
|++.|+|+||.| +++++||+++++|||++..+++.++.. .....+.+.. +....+|
T Consensus 116 A~e~Alk~ar~~------~gr~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 178 (423)
T TIGR00713 116 ATMSAVRLARGY------TGRDKIIKFEGCYHGHHDALLVKAGSGAATLGLPTSPGVPEDFAKLTLVLP----------- 178 (423)
T ss_pred HHHHHHHHHHHh------hCCCEEEEEcCCCCCChhhhhccccCcccccCCCCCCCCCcccccceEEeC-----------
Confidence 999999999998 578999999999999987777655421 1111111110 1112222
Q ss_pred ChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccccccccc
Q psy8199 399 SANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACE 478 (965)
Q Consensus 399 ~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~ 478 (965)
++|+++|++++.++.+++++|++|| +++++|.+.++++|+++|+++|++||+++|+||||+|| |+|.+++++
T Consensus 179 ------~~d~~~l~~~i~~~~~~~aavi~ep-~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~-r~g~~~~~~ 250 (423)
T TIGR00713 179 ------YNDLEALEEVFEEYGEEIAGVIVEP-VAGNMGVVPPKPEFLAGLRALTEEYGSLLIFDEVMTGF-RVALGGAQE 250 (423)
T ss_pred ------CCCHHHHHHHHHHcCCcEEEEEEeC-CCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEcccccc-ccCcchhHH
Confidence 2478899999976557899999999 89999998888999999999999999999999999999 898888888
Q ss_pred ccCCCcceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHH
Q psy8199 479 HAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDM 558 (965)
Q Consensus 479 ~~~~~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~ 558 (965)
++++.||++||||++++| +|+|++++++++++.+... ..+.+++||++||++|++++++|+.++++++.+++++++
T Consensus 251 ~~~~~pDi~t~sK~l~~G-~pig~v~~~~~i~~~~~~~---~~~~~~~T~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~ 326 (423)
T TIGR00713 251 YFGVEPDLTTLGKIIGGG-LPVGAFGGRREIMERLAPE---GPVYQAGTLSGNPLAMAAGLATLKLLDEEGVYTELDELA 326 (423)
T ss_pred HhCCCcchhhhhhhhcCC-CceeeeeEHHHHHHhhCcC---CCeeeccCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 899999999999999988 8999999999999988631 224578999999999999999999998888999999999
Q ss_pred HHHHHHHHcc-cCCCceeeeeceeEEEEEEEeecCcc-------chhhHHHHHHHHHHHcCcEEeecC-CEEEEeCCccc
Q psy8199 559 KKITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDPE-------QIETFSKKFFVAALKNELLLRPIG-NTVYLMPPYIL 629 (965)
Q Consensus 559 ~~l~~~L~~l-~~~~~i~~v~g~G~~~~i~~~~~~~~-------~~~~~~~~~~~~l~~~Gi~~~~~~-~~lR~~p~~~~ 629 (965)
+++++.|.++ .+++.+..+++.|+|+.+++...... ........+.+.|+++||++.+.+ +.+||+|+ +
T Consensus 327 ~~~~~~l~~~~~~~~~~~~v~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~l~~~--~ 404 (423)
T TIGR00713 327 KRLAEGLSEVLEDTGIPHTVNRVGSMFSLFFTEEEVTNYADAKKSDTELFAKFFHEMLDKGVFLPPSQFEACFLSAA--H 404 (423)
T ss_pred HHHHHHHHHHHHhcCCCeEEEeeccEEEEEEecCCCCChhhhhcccHHHHHHHHHHHHHCCeEEecCCccceeeECC--C
Confidence 9999999876 55666668899999999988621100 011223467888999999987654 57899987 7
Q ss_pred CHHHHHHHHHhhhccc
Q psy8199 630 NKNEIQHMTSAIFQTF 645 (965)
Q Consensus 630 t~~~i~~~~~~l~~~~ 645 (965)
++++++++++++.+.+
T Consensus 405 t~~~i~~~~~~l~~~l 420 (423)
T TIGR00713 405 TEEDIENTIEAAEEVF 420 (423)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999999887654
|
This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases. |
| >PRK02936 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-50 Score=456.19 Aligned_cols=354 Identities=27% Similarity=0.440 Sum_probs=308.8
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhH
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGAS 325 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGse 325 (965)
+|+||.|||+||||.+|+|+.+|||+||+|++|+++|+++..+.+ ..+.++...++++++++..+ .++++|++||++
T Consensus 21 ~~~~d~~G~~~lD~~s~~~~~~lG~~~p~v~~a~~~~~~~~~~~~-~~~~~~~~~~la~~l~~~~~--~~~~~~~~sG~~ 97 (377)
T PRK02936 21 TKVTDNNGKTYLDFTSGIAVCNLGHCHPTVTKAVQEQLDDIWHVS-NLFTNSLQEEVASLLAENSA--GDLVFFCNSGAE 97 (377)
T ss_pred CEEEeCCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccccc-cccCCHHHHHHHHHHHhcCC--CCEEEEeCCcHH
Confidence 999999999999999999999999999999999999998864433 34567888999999998874 469999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHH
Q psy8199 326 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIAR 405 (965)
Q Consensus 326 A~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (965)
|++.|+++++.+ +++++|++++++|||++.+++++++...++..+.+..+++.++|.
T Consensus 98 a~~~A~~~a~~~------~g~~~vi~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 154 (377)
T PRK02936 98 ANEAALKLARKH------TGKSKIVTFEQSFHGRTFGTMSATGQEKIKEGFGPLLPGFTHVPF----------------- 154 (377)
T ss_pred HHHHHHHHHHHh------cCCCeEEEECCCcCCCcHHhhhccCCccccccCCCCCCCceEeCC-----------------
Confidence 999999999887 578899999999999999999988765555555555555555554
Q ss_pred HHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcc
Q psy8199 406 CAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPD 485 (965)
Q Consensus 406 ~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pD 485 (965)
+|++++++.+. +++++|++|| +++++|.++++++|+++|+++|++||+++|+||||+||||+|.+++++++++.||
T Consensus 155 ~d~~~l~~~~~---~~~~~ii~e~-i~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~~~~~~~~~~~d 230 (377)
T PRK02936 155 NDIKALKEVMN---EEVAAVMLEV-VQGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIGRTGTLFAYEQFGLDPD 230 (377)
T ss_pred CCHHHHHHhcc---CCeEEEEEec-ccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhHHHhhCCCCc
Confidence 36788888774 4689999999 9999999989999999999999999999999999999999998888888899999
Q ss_pred eeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Q psy8199 486 FLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKAL 565 (965)
Q Consensus 486 ivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L 565 (965)
++||||++++| +|+|++++++++++.+.. ..+.+||++||++|++++++|+.+..+++.++++++++++++.|
T Consensus 231 i~t~sK~l~~G-~~ig~v~~~~~~~~~~~~------~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L 303 (377)
T PRK02936 231 IVTVAKGLGNG-IPVGAMIGKKELGTAFGP------GSHGSTFGGNPLAMAAAKEVLQVIKQPSFLEEVQEKGEYFLQKL 303 (377)
T ss_pred EEEEcccccCC-CccEEEEEcHHHHhhccC------CCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 99999999988 799999999999988754 24678999999999999999999877788999999999999999
Q ss_pred Hcc-cCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecC-CEEEEeCCcccCHHHHHHHHHhhhc
Q psy8199 566 TSL-ITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG-NTVYLMPPYILNKNEIQHMTSAIFQ 643 (965)
Q Consensus 566 ~~l-~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~-~~lR~~p~~~~t~~~i~~~~~~l~~ 643 (965)
+++ .+++.+..+++.|.++++++. + . ...+.+.|.++||++.|.+ +++||+||+.+++++++++++++.+
T Consensus 304 ~~~~~~~~~~~~v~~~g~~~~i~~~--~-----~-~~~~~~~l~~~gv~v~~~g~~~lRi~p~~~~~~~~i~~~i~~l~~ 375 (377)
T PRK02936 304 QEELEHLECVKNIRGKGLMIGIECT--E-----E-VAPVIEQLREEGLLVLSAGPNVIRLLPPLVVTKEELDQAVYLLKK 375 (377)
T ss_pred HHHHhhCCcEEeEeecceEEEEEec--c-----h-HHHHHHHHHHCCeEEecCCCCEEEEECCcccCHHHHHHHHHHHHH
Confidence 885 567777788999999999885 2 1 4467788999999999876 7999999999999999999998865
Q ss_pred c
Q psy8199 644 T 644 (965)
Q Consensus 644 ~ 644 (965)
+
T Consensus 376 ~ 376 (377)
T PRK02936 376 V 376 (377)
T ss_pred h
Confidence 3
|
|
| >COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-50 Score=420.34 Aligned_cols=309 Identities=54% Similarity=0.893 Sum_probs=287.4
Q ss_pred ccccHHHHHHhcCCCchh-HHHHHHHHHHHhcCCCeEEEeEeEeeccCCCCCCCCCCCCCCcCCCCcccccCCCHHHHHH
Q psy8199 644 TFNELDEVINLFNLPFND-LLFRAQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVIT 722 (965)
Q Consensus 644 ~~~~~~e~l~l~~~~~~~-l~~~a~~~~~~~~~g~~~~~~~~i~~~s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~ 722 (965)
...+.++++.++..+..+ ++..|+...|++|+|+.|.++++|+++|..||.+|.||+|++++..+...++.+++|+|++
T Consensus 12 ~~~~~~e~~~l~~~~~~~~~L~~aA~~~R~~~~g~~V~l~~ii~iktg~c~edC~yC~qS~~~~~~~~~~~l~~~eeIle 91 (335)
T COG0502 12 ERWTLDEALALLDLPDEDELLFEAAQKHRLHFDGNEVQLSTLISIKTGCCPEDCAYCSQSARYKTGVKARKLMEVEEILE 91 (335)
T ss_pred CCcCHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCeEEEEEEEEeecCCCCCCCCCccccccCcCCCchhhcCCHHHHHH
Confidence 456788888888766555 5555555556777799999999999988888999999999998877778888899999999
Q ss_pred HHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHH-hcCcEeEEecCCCCHHHHHHHHHhCCCeEeccCCCCHHHHh
Q psy8199 723 AAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVK-KIGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYG 801 (965)
Q Consensus 723 ~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~-~~~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~~es~~~~~~ 801 (965)
.|+.+++.|+.++++++++.. ..++.+++.++++.++ +.+++++++.|.++++.+++|++||++++++++||+++.|+
T Consensus 92 ~Ak~ak~~Ga~r~c~~aagr~-~~~~~~~i~~~v~~Vk~~~~le~c~slG~l~~eq~~~L~~aGvd~ynhNLeTs~~~y~ 170 (335)
T COG0502 92 AAKKAKAAGATRFCMGAAGRG-PGRDMEEVVEAIKAVKEELGLEVCASLGMLTEEQAEKLADAGVDRYNHNLETSPEFYE 170 (335)
T ss_pred HHHHHHHcCCceEEEEEeccC-CCccHHHHHHHHHHHHHhcCcHHhhccCCCCHHHHHHHHHcChhheecccccCHHHHc
Confidence 999999999999999999887 6688999999999999 58999999999999999999999999999999999999999
Q ss_pred cccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCCCCCCCHHH
Q psy8199 802 DIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLE 881 (965)
Q Consensus 802 ~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~~~~~~~~~ 881 (965)
+|+++++|++++++++.++++|+.++++.|+|+|||.+|+++++..|+++.. +++||++.|+|.|||||++.++.++.+
T Consensus 171 ~I~tt~t~edR~~tl~~vk~~Gi~vcsGgI~GlGEs~eDri~~l~~L~~l~~-pdsVPIn~l~P~~GTPle~~~~~~~~e 249 (335)
T COG0502 171 NIITTRTYEDRLNTLENVREAGIEVCSGGIVGLGETVEDRAELLLELANLPT-PDSVPINFLNPIPGTPLENAKPLDPFE 249 (335)
T ss_pred ccCCCCCHHHHHHHHHHHHHcCCccccceEecCCCCHHHHHHHHHHHHhCCC-CCeeeeeeecCCCCCccccCCCCCHHH
Confidence 9999999999999999999999999999999999999999999999999986 999999999999999999999999999
Q ss_pred HHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeCCccccCCCCCChhhHHHHHHcCCCcchh
Q psy8199 882 FIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLLKKLGINTRNI 954 (965)
Q Consensus 882 ~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~~~~~g~~~~~~ 954 (965)
.+|+||++|+++|+..|+++++++.+.++.+..++.+|||++++|+.++|+.|.+.++|.+|++.+|+.+...
T Consensus 250 ~lk~IA~~Ri~~P~~~Ir~s~gr~~~~~~~q~~~~~aGansi~~g~~~ltt~~~~~e~D~~~l~~lgl~~e~~ 322 (335)
T COG0502 250 FLKTIAVARIIMPKSMIRLSAGRETMLPELQALAFMAGANSIFVGDKYLTTPGPDEDKDLELLKDLGLEPELL 322 (335)
T ss_pred HHHHHHHHHHHCCcceeEccCCcccccHHHHHHHHHhccceeeecceEeecCCCCchhHHHHHHHcCCCcccc
Confidence 9999999999999999999999999999999999999999999999777888889999999999999998754
|
|
| >PRK15108 biotin synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-50 Score=436.63 Aligned_cols=314 Identities=56% Similarity=0.966 Sum_probs=289.3
Q ss_pred ccccHHHHHHhcCCCchhHHHHHHHHHHHhcCCCeEEEeEeEeeccCCCCCCCCCCCCCCcCCCCcccccCCCHHHHHHH
Q psy8199 644 TFNELDEVINLFNLPFNDLLFRAQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITA 723 (965)
Q Consensus 644 ~~~~~~e~l~l~~~~~~~l~~~a~~~~~~~~~g~~~~~~~~i~~~s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~ 723 (965)
...+.+|++.|++.++.+++..|+++|+++|++++++++++++++|++|+++|.||+|++........++.+++|||++.
T Consensus 5 ~~l~~~e~~~l~~~~l~~l~~~A~~ir~~~fg~~~v~l~~i~~~~Tn~C~~~C~yC~~~~~~~~~~~~~~~ls~eEI~~~ 84 (345)
T PRK15108 5 PRWTLSQVTELFEKPLLELLFEAQQVHRQHFDPRQVQVSTLLSIKTGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLES 84 (345)
T ss_pred CCCCHHHHHHHHcccHHHHHHHHHHHHHHhcCCCEEEEEEeEEEECCCcCCCCcCCCCcccCCCCCCcccCCCHHHHHHH
Confidence 45678899999988899999999999999996678999999999999999999999998754444455667999999999
Q ss_pred HHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHhcCcEeEEecCCCCHHHHHHHHHhCCCeEeccCCCCHHHHhcc
Q psy8199 724 AQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDI 803 (965)
Q Consensus 724 ~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~~es~~~~~~~i 803 (965)
++.+.+.|+++|++++++..+...++++++++++.+|+.++.++++.|.++++.+++||+||++++++++||+++.|+++
T Consensus 85 a~~~~~~G~~~i~i~~~g~~p~~~~~e~i~~~i~~ik~~~i~v~~s~G~ls~e~l~~LkeAGld~~n~~leT~p~~f~~I 164 (345)
T PRK15108 85 ARKAKAAGSTRFCMGAAWKNPHERDMPYLEQMVQGVKAMGLETCMTLGTLSESQAQRLANAGLDYYNHNLDTSPEFYGNI 164 (345)
T ss_pred HHHHHHcCCCEEEEEecCCCCCcchHHHHHHHHHHHHhCCCEEEEeCCcCCHHHHHHHHHcCCCEEeeccccChHhcCCC
Confidence 99999999999999877543345678999999999999899999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCCCCCCCHHHHH
Q psy8199 804 ISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFI 883 (965)
Q Consensus 804 ~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~~~~~~~~~~~ 883 (965)
++++++++|+++++.++++|+.+++++|+|+|||.+|+++++..++++++.+++|+++.|+|.+||||++.++.++.+.+
T Consensus 165 ~~~~~~~~rl~~i~~a~~~G~~v~sg~i~GlgEt~ed~v~~~~~l~~l~~~~~~ip~~~~~P~~gTpl~~~~~~~~~e~l 244 (345)
T PRK15108 165 ITTRTYQERLDTLEKVRDAGIKVCSGGIVGLGETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAFDFI 244 (345)
T ss_pred CCCCCHHHHHHHHHHHHHcCCceeeEEEEeCCCCHHHHHHHHHHHHhccCCCCEEEeCCccCCCCCCCCCCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999953267999999999999999998889999999
Q ss_pred HHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeCCccccCCCCCChhhHHHHHHcCCCcchhhhH
Q psy8199 884 RTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLLKKLGINTRNIKIK 957 (965)
Q Consensus 884 ~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~~~~~g~~~~~~~~~ 957 (965)
|++|++|+++|+..++++++|+.++.+.++.+|.+|||++|+|++++|+.|.+.++|.+||+++|++|++++..
T Consensus 245 r~iAi~Rl~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~~ltt~g~~~~~~~~~i~~~g~~~~~~~~~ 318 (345)
T PRK15108 245 RTIAVARIMMPTSYVRLSAGREQMNEQTQAMCFMAGANSIFYGCKLLTTPNPEEDKDLQLFRKLGLNPQQTAVL 318 (345)
T ss_pred HHHHHHHHHCCCceeeecccHhHhChhhHHHHHHcCCcEEEECCccccCCCCCHHHHHHHHHHcCCCccccccc
Confidence 99999999999999999999998889999999999999999999877888999999999999999999988753
|
|
| >PLN02389 biotin synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-50 Score=438.32 Aligned_cols=311 Identities=49% Similarity=0.848 Sum_probs=285.8
Q ss_pred ccccHHHHHHhcCCCchhHHHHHHHHHHHhcCCCeEEEeEeEeeccCCCCCCCCCCCCCCcCCCCcccccCCCHHHHHHH
Q psy8199 644 TFNELDEVINLFNLPFNDLLFRAQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITA 723 (965)
Q Consensus 644 ~~~~~~e~l~l~~~~~~~l~~~a~~~~~~~~~g~~~~~~~~i~~~s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~ 723 (965)
...+.+|++.|+..++.+|+..|+++|+++++|+.|+++.+++++|++|+++|.||+|++.++.....|+.+++|+|++.
T Consensus 45 ~~lt~~e~l~L~~~~l~~l~~~A~~vr~~~~~~~~v~~~~i~n~~T~~C~~~C~fCaqs~~~~~~~~~~~~Ls~EeIl~~ 124 (379)
T PLN02389 45 NDWTRDEIKEVYDSPLLDLLFHGAQVHRHAHDPREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKAQKLMSKDDVLEA 124 (379)
T ss_pred CCCCHHHHHHHHcCcHHHHHHHHHHHHHHhcCCCEEEEEEEEEeccCCcCcCCCCCCCcccCCCCCcccccCCHHHHHHH
Confidence 34678899999877899999999999999887779999999999999999999999998765555556777999999999
Q ss_pred HHHHHHCCCCEEEEeeccCCCCc--ccHHHHHHHHHHHHhcCcEeEEecCCCCHHHHHHHHHhCCCeEeccCCCCHHHHh
Q psy8199 724 AQKAKSDGATRFCMGAAWRELKD--RDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYG 801 (965)
Q Consensus 724 ~~~~~~~g~~~i~l~~g~~~~~~--~~~~~~~~~~~~i~~~~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~~es~~~~~~ 801 (965)
++++.+.|+++|++++++..... ..+++++++++.+|+.++.++.+.|.++++.+++||+||++++++++||+++.|+
T Consensus 125 a~~~~~~G~~~~~ivts~rg~~~e~~~~e~i~eiir~ik~~~l~i~~s~G~l~~E~l~~LkeAGld~~~~~LeTs~~~y~ 204 (379)
T PLN02389 125 AKRAKEAGSTRFCMGAAWRDTVGRKTNFNQILEYVKEIRGMGMEVCCTLGMLEKEQAAQLKEAGLTAYNHNLDTSREYYP 204 (379)
T ss_pred HHHHHHcCCCEEEEEecccCCCCChhHHHHHHHHHHHHhcCCcEEEECCCCCCHHHHHHHHHcCCCEEEeeecCChHHhC
Confidence 99999999999999865432112 3589999999999988999999999999999999999999999999999989999
Q ss_pred cccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCCCCCCCHHH
Q psy8199 802 DIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLE 881 (965)
Q Consensus 802 ~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~~~~~~~~~ 881 (965)
++++++++++|+++++.++++|+++++++|+|+|||.+|+++++..+++++..++.+++++|+|.|||||++.+++++.+
T Consensus 205 ~i~~~~s~e~rl~ti~~a~~~Gi~v~sg~IiGlgEt~edrv~~l~~Lr~L~~~~~~v~l~~l~P~~GTpL~~~~~~s~~e 284 (379)
T PLN02389 205 NVITTRSYDDRLETLEAVREAGISVCSGGIIGLGEAEEDRVGLLHTLATLPEHPESVPINALVAVKGTPLEDQKPVEIWE 284 (379)
T ss_pred CcCCCCCHHHHHHHHHHHHHcCCeEeEEEEECCCCCHHHHHHHHHHHHhcccCCcEEecccceecCCCcCCCCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999433899999999999999999999999999
Q ss_pred HHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeCCccccCCCCCChhhHHHHHHcCCCcchh
Q psy8199 882 FIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLLKKLGINTRNI 954 (965)
Q Consensus 882 ~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~~~~~g~~~~~~ 954 (965)
++|++|++|+++|+..++++++|..++.+.++.+|.+|||++|+|++++|+.|.++++|++||+++|+.+...
T Consensus 285 ~lr~iAi~Rl~lP~~~i~i~~gr~~l~~~~~~~~l~~GAN~~~~g~~~Ltt~g~~~~~d~~~~~~lg~~~~~~ 357 (379)
T PLN02389 285 MVRMIATARIVMPKAMVRLSAGRVRFSMAEQALCFLAGANSIFTGDKLLTTPNNDFDADQAMFKELGLIPKPP 357 (379)
T ss_pred HHHHHHHHHHHCCCccccccccccccChhHHHHHHHhCCCEEEECCcccCCCCCChHHHHHHHHHcCCCcccc
Confidence 9999999999999999999999998889999999999999999999878999999999999999999998743
|
|
| >PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-49 Score=454.18 Aligned_cols=364 Identities=25% Similarity=0.416 Sum_probs=312.3
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhH
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGAS 325 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGse 325 (965)
+|+||.||++|||+.+++++.++||+||+|.+|+++|++++.+.+ ....++...+++++|+++++ .++++|++||++
T Consensus 33 ~~~~d~~g~~~lD~~~~~~~~~~Gh~~~~i~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~~~--~~~~~~~~SGs~ 109 (401)
T PRK00854 33 VWVWDTDGNRYLDCLSAYSAVNQGHCHPKILAAMVEQAGRLTLTS-RAFRNDQLAPLYEELAALTG--SHKVLPMNSGAE 109 (401)
T ss_pred CEEEECCCCEEEEcCcchhhccCCCCCHHHHHHHHHHHhhccccc-cccCCHHHHHHHHHHHhhCC--CCEEEEeCCcHH
Confidence 899999999999999999999999999999999999999876543 24567889999999999985 479999999999
Q ss_pred HHHHHHHHHHHHHHhc-CCC-CceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHH
Q psy8199 326 AVEVALKMSFHYWYNK-GFL-NKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEI 403 (965)
Q Consensus 326 A~~~Al~~a~~~~~~~-g~~-~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (965)
|++.|+++++.+++.+ |.+ ++++||+++.+|||++.+++++++.+..+..+.+..+++.++|.
T Consensus 110 A~e~al~~a~~~~~~~~g~~~~~~~vi~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 174 (401)
T PRK00854 110 AVETAIKAVRKWGYEVKGVPEGQAEIIVCADNFHGRTLSIVGFSTDPDARGGFGPFTPGFRVVPF--------------- 174 (401)
T ss_pred HHHHHHHHHHHHHHhccCCCCCCceEEEECCCcCCccHHHHhccCCccccccCCCCCCCeEEeCC---------------
Confidence 9999999999875332 332 56799999999999999888887766555555666666666654
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCC
Q psy8199 404 ARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIW 483 (965)
Q Consensus 404 ~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~ 483 (965)
+|+++|++++. +++++|++|| ++|++|.+.++++||++|+++|++||+++|+||+|+|||++|.+++.+++++.
T Consensus 175 --~d~~~le~~i~---~~~~aii~e~-~~~~~G~~~~~~~~l~~l~~l~~~~gi~lI~DEv~~g~g~~g~~~~~~~~g~~ 248 (401)
T PRK00854 175 --GDAEALEAAIT---PNTVAFLVEP-IQGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQTGLGRTGKLLAEEHEGIE 248 (401)
T ss_pred --CCHHHHHHHhC---CCeEEEEEcc-ccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCchHhHHhhcCCC
Confidence 36788888884 4689999999 99999999999999999999999999999999999999999988777788999
Q ss_pred cceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Q psy8199 484 PDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITK 563 (965)
Q Consensus 484 pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~ 563 (965)
||++++||+++||++|+|++++++++++.+.. ..++.||+++|+++++++++|+.++++++.++++++++++.+
T Consensus 249 ~D~~~~~K~l~gg~~~ig~v~~~~~~~~~l~~------~~~~~t~~~~~~~~aa~~a~L~~l~~~~~~~~~~~~~~~l~~ 322 (401)
T PRK00854 249 ADVTLIGKALSGGFYPVSAVLSNSEVLGVLKP------GQHGSTFGGNPLACAVARAALKVLTEEGMIENAAEMGAYFLE 322 (401)
T ss_pred CCEEEecccccCCccCeEEEEEcHHHHhcccC------CCCCCCCCcCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 99999999999998899999999999987754 347789999999999999999998877789999999999999
Q ss_pred HHHcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec-CCEEEEeCCcccCHHHHHHHHHhhh
Q psy8199 564 ALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-GNTVYLMPPYILNKNEIQHMTSAIF 642 (965)
Q Consensus 564 ~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-~~~lR~~p~~~~t~~~i~~~~~~l~ 642 (965)
.|+++. .+.+..+++.|.|+.+.+. .+ ......+.+.|.++||++.+. ++++||+||+.+++++++++++++.
T Consensus 323 ~L~~~~-~~~~~~~~g~g~~~~i~~~-~~----~~~~~~~~~~L~~~GV~v~~~~~~~lR~~p~~~~t~e~i~~~i~~l~ 396 (401)
T PRK00854 323 GLRSIR-SNIVREVRGRGLMLAVELE-PE----AGGARQYCEALKERGLLAKDTHDHTIRLAPPLVITREQVDWALEQIA 396 (401)
T ss_pred HHHhhc-cCceEEEeccceEEEEEEe-cC----chhHHHHHHHHHHCCeEEecCCCCEEEEeCCcccCHHHHHHHHHHHH
Confidence 998873 2335678899999999885 22 112456888999999999875 4799999999999999999999987
Q ss_pred ccc
Q psy8199 643 QTF 645 (965)
Q Consensus 643 ~~~ 645 (965)
+.+
T Consensus 397 ~~l 399 (401)
T PRK00854 397 KVL 399 (401)
T ss_pred HHh
Confidence 643
|
|
| >PTZ00125 ornithine aminotransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-49 Score=447.28 Aligned_cols=370 Identities=28% Similarity=0.436 Sum_probs=310.2
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhH
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGAS 325 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGse 325 (965)
+|+||.|||+|||+.+|+++.++||+||+|++|+.++++.+++.+. .+.++...++++.+++.. +.++++|++|||+
T Consensus 23 ~~~~d~dg~~~lD~~~~~~~~~~Gh~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~--~~~~~~~~~SGs~ 99 (400)
T PTZ00125 23 VFVWDVEGKKYYDFLSAYSAVNQGHCHPKILAALINQAQKLTLTSR-AFYNDVLGLAEKYITDLF--GYDKVLPMNSGAE 99 (400)
T ss_pred CEEEeCCCCEEEEcccCHhhccCCcCCHHHHHHHHHHHHhcccccc-cccCHHHHHHHHHHHhCC--CCCEEEEeCCcHH
Confidence 8999999999999999999999999999999999999988765442 344677788888888876 4689999999999
Q ss_pred HHHHHHHHHHHHHHhc-CC-CCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHH
Q psy8199 326 AVEVALKMSFHYWYNK-GF-LNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEI 403 (965)
Q Consensus 326 A~~~Al~~a~~~~~~~-g~-~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (965)
||+.|+++++.++..+ |. +++++|++++++|||++.++++.++...+...+.+..++...++.
T Consensus 100 A~e~al~~~~~~~~~~~~~~~~~~~vl~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 164 (400)
T PTZ00125 100 AGETALKFARKWGYEVKGIPENQAKIIFCNGNFSGRTIGACSASTDPKCYNNFGPFVPGFELVDY--------------- 164 (400)
T ss_pred HHHHHHHHHHHHHHhccCCCCCCCeEEEECCCcCCccHHHHhhcCCcchhccCCCCCCCceEeCC---------------
Confidence 9999999998764322 22 256889999999999999999888754333333343334434333
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCC
Q psy8199 404 ARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIW 483 (965)
Q Consensus 404 ~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~ 483 (965)
+|+++|+++++ .+++++|++|| ++|++|.+.++++|+++|+++|++||+++|+||||+||||+|++++.+++++.
T Consensus 165 --~d~~~le~~l~--~~~~~~v~~ep-~~~~~G~~~~~~~~l~~l~~l~~~~~~lli~Dev~~g~g~~G~~~~~~~~~~~ 239 (400)
T PTZ00125 165 --NDVEALEKLLQ--DPNVAAFIVEP-IQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLGRTGKLLAHDHEGVK 239 (400)
T ss_pred --CCHHHHHHHhC--CCCeEEEEEcC-ccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhhHHHhcCCC
Confidence 47899999885 35799999999 89999999999999999999999999999999999999999998888888999
Q ss_pred cceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Q psy8199 484 PDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITK 563 (965)
Q Consensus 484 pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~ 563 (965)
||++++||++++|++|+|++++++++++.+.. ..++.|++++|++++++.++|+.+.++++.++++++++++++
T Consensus 240 pd~~~~sK~l~~g~~~ig~v~~~~~~~~~~~~------~~~~~t~~~~~~~~~aa~~~l~~i~~~~~~~~~~~~~~~l~~ 313 (400)
T PTZ00125 240 PDIVLLGKALSGGLYPISAVLANDDVMLVIKP------GEHGSTYGGNPLACAVAVEALEVLKEEKLAENAQRLGEVFRD 313 (400)
T ss_pred CCEEEEcccccCCCcCcEEEEEcHHHHhhccC------CCCCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 99999999999997899999999999988754 246788999999999999999998877899999999999999
Q ss_pred HHHcc-cCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecC-CEEEEeCCcccCHHHHHHHHHhh
Q psy8199 564 ALTSL-ITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG-NTVYLMPPYILNKNEIQHMTSAI 641 (965)
Q Consensus 564 ~L~~l-~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~-~~lR~~p~~~~t~~~i~~~~~~l 641 (965)
+|+++ ..++.+..+++.|+|+++.+...+ ......+.+.|.++||++.|.+ +.+||+|++.+++++++++++++
T Consensus 314 ~l~~l~~~~~~~~~~~~~g~~~~v~~~~~~----~~~~~~~~~~l~~~Gv~v~~~~~~~lRi~~~~~~~~~~i~~~l~~l 389 (400)
T PTZ00125 314 GLKELLKKSPWVKEIRGKGLLNAIVFDHSD----GVNAWDLCLKLKENGLLAKPTHDNIIRFAPPLVITKEQLDQALEII 389 (400)
T ss_pred HHHHHHhcCCCeEEEecccEEEEEEEccCc----chHHHHHHHHHHHCCeEEeecCCCEEEEECCccCCHHHHHHHHHHH
Confidence 99887 455666778999999999875111 1234567888999999998865 79999999999999999999999
Q ss_pred hcccccH
Q psy8199 642 FQTFNEL 648 (965)
Q Consensus 642 ~~~~~~~ 648 (965)
.+.+..+
T Consensus 390 ~~~l~~~ 396 (400)
T PTZ00125 390 KKVLKSF 396 (400)
T ss_pred HHHHHHH
Confidence 8765443
|
|
| >PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-49 Score=447.79 Aligned_cols=361 Identities=17% Similarity=0.261 Sum_probs=283.3
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhH
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGAS 325 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGse 325 (965)
+||||.|||+|||+.+|+|+.+|||+||+|++|+++|++++.. ....+....+++++|++.+| +.++|+|++||||
T Consensus 40 ~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~---~~~~~~~~~~la~~l~~~~p-~~~~v~f~~sGse 115 (431)
T PRK06209 40 AHVWDVDGNEYIEYGMGLRAVGLGHAYPPVVEAVREALQDGCN---FTRPSAIELDAAESFLELID-GADMVKFCKNGSD 115 (431)
T ss_pred CEEEeCCCCEEEEccccccchhcCCCCHHHHHHHHHHHHhCcC---CCCCCHHHHHHHHHHHHhCC-ccceEEEecCHHH
Confidence 9999999999999999999999999999999999999998643 23456667789999999987 5689999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEE-cCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHH
Q psy8199 326 AVEVALKMSFHYWYNKGFLNKKKFICL-QNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIA 404 (965)
Q Consensus 326 A~~~Al~~a~~~~~~~g~~~~~~vi~~-~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (965)
|++.|+|+||.| ++|.+|+.+ .++|||+.......+.... .........+ ..+.
T Consensus 116 A~e~AlklAr~~------tgr~~i~~~~~~~~h~~~~~~~g~~~~~~------~~~~~~~~~~-------------~~~~ 170 (431)
T PRK06209 116 ATSAAVRLARAY------TGRDLVARCADHPFFSTDDWFIGTTPMSA------GIPASVSALT-------------VTFR 170 (431)
T ss_pred HHHHHHHHHHHH------hCCCeEEEeccCccccccccccccCCCCC------CCChhHhccc-------------cccC
Confidence 999999999998 578899999 6788874222111000000 0000000000 0123
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCc
Q psy8199 405 RCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWP 484 (965)
Q Consensus 405 ~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~p 484 (965)
++|+++|+++++++.+++++|++|| ++++ .|+++||++|+++|++||+++|+|||+|||++++ +++.+++++.|
T Consensus 171 ~~d~~~l~~~l~~~~~~~aavi~Ep-v~g~----~~~~~~l~~l~~lc~~~g~lLI~DEv~tG~~~~~-~g~~~~~gv~P 244 (431)
T PRK06209 171 YNDIASLEALFEDHPGRIACVILEP-ATAD----EPQDGFLHEVRRLCHENGALFILDEMITGFRWHM-RGAQKLYGIVP 244 (431)
T ss_pred CCCHHHHHHHHHhCCCCEEEEEEcc-ccCC----CCCHHHHHHHHHHHHHcCCEEEEEcccccCCcCc-chhhHHhCCCc
Confidence 3688999999976667899999999 7766 6789999999999999999999999999997753 33445689999
Q ss_pred ceeeeccccCCCcccceeeeecHHHHHh--hhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Q psy8199 485 DFLCLSKGITGGYLPLSLVMTTDKIYNS--IYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKIT 562 (965)
Q Consensus 485 Divt~sK~l~gG~~pig~v~~~~~i~~~--~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~ 562 (965)
|++|+||++||| +|+|++++++++++. +......+.+.|++||++||++|++++++|++++++++.+++++++++|+
T Consensus 245 Di~t~gK~lggG-~p~~av~~~~~i~~~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~i~~~~~~~~~~~~g~~l~ 323 (431)
T PRK06209 245 DLSCFGKALGNG-FAVSALAGKREYMELGGLEHTDRERVFLLSTTHGAETHALAAAIATMAIYRDEDVIERLHEQGAKLA 323 (431)
T ss_pred ceeeehhhhcCC-cccEEEEEHHHHHhhhcccccCCCCceeeccCCCCCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 999999999999 699999999999987 32111234567899999999999999999999998899999999999999
Q ss_pred HHHHcc-cCCCceeeeeceeEEEEEEEeecC--ccchhhHHHHHHHHHHHcCcEEeecCCEEEEeCCcccCHHHHHHHHH
Q psy8199 563 KALTSL-ITHPKIINFRQKGMIWAFDVIIED--PEQIETFSKKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTS 639 (965)
Q Consensus 563 ~~L~~l-~~~~~i~~v~g~G~~~~i~~~~~~--~~~~~~~~~~~~~~l~~~Gi~~~~~~~~lR~~p~~~~t~~~i~~~~~ 639 (965)
++|+++ .+++.+..+++.|.++.+.+...+ +.+.......+.+.|+++|+++.| ++++ ..+++++|+++++
T Consensus 324 ~~L~~~~~~~~~~~~vr~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~p~----l~is--~~ht~~dId~~l~ 397 (431)
T PRK06209 324 AGVNEAAAEHGLQDHVRVSGRPCCLTYSTLDGNGQPSQAFRTLFLQETIRRGVLMPS----LVVS--YAHGDADIERTID 397 (431)
T ss_pred HHHHHHHHhCCCCeEEEeecceEEEEEecCCcccCCcHHHHHHHHHHHHHCCccccc----cccc--ccCCHHHHHHHHH
Confidence 999887 556766788999998888875211 111223344677889999998733 3344 6789999999999
Q ss_pred hhhcccccH
Q psy8199 640 AIFQTFNEL 648 (965)
Q Consensus 640 ~l~~~~~~~ 648 (965)
++.+++..+
T Consensus 398 ~l~~~l~~~ 406 (431)
T PRK06209 398 AVHGALGVY 406 (431)
T ss_pred HHHHHHHHH
Confidence 998766543
|
|
| >PRK04260 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-47 Score=432.99 Aligned_cols=352 Identities=27% Similarity=0.416 Sum_probs=297.6
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhH
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGAS 325 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGse 325 (965)
+||||.||++|||+.+++++.+||| ||+|++|+.+|+++..++. ..+.++...++++.+... ....++|++||||
T Consensus 21 ~~l~d~dg~~~lD~~s~~~~~~lG~-~p~v~~a~~~~~~~~~~~~-~~~~~~~~~~la~~l~~~---~~~~~~~~~SGse 95 (375)
T PRK04260 21 NYLIDTDGKKYLDFSSGIGVTNLGF-HPQVQQALQKQAGLIWHSP-NLYLNSLQEEVAQKLIGD---KDYLAFFCNSGAE 95 (375)
T ss_pred CEEEeCCCCEEEECCCCcccccCCC-CHHHHHHHHHHHHhcCccc-CccCCHHHHHHHHHHhcC---cCCEEEEcCccHH
Confidence 9999999999999999999999999 9999999999998764332 235566777777776542 2236899999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHH
Q psy8199 326 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIAR 405 (965)
Q Consensus 326 A~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (965)
||+.|+++++.+ +++++|++++++|||++.++++.++...+...+.+....+.+.+.
T Consensus 96 A~~~Al~~ar~~------~~~~~vv~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 152 (375)
T PRK04260 96 ANEAAIKIARKA------TGKQEIITFQNSFHGRTFGSMSATGQDKIKDGFGDGVPHFSYAIF----------------- 152 (375)
T ss_pred HHHHHHHHHHHh------cCCCeEEEECCCcCcccHHHHhccCCcccCCCCCCCCCCeEEeCC-----------------
Confidence 999999999987 578899999999999999999888755444333332222222211
Q ss_pred HHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcc
Q psy8199 406 CAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPD 485 (965)
Q Consensus 406 ~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pD 485 (965)
+|++++++++. +++++|++|| +++++|.+.++.+||++++++|+++|+++|+||+|+|||++|.+++++.+++.||
T Consensus 153 ~dl~~l~~~l~---~~~a~vi~e~-v~~~~G~~~~~~~~l~~~~~l~~~~~~~~i~De~~~g~g~~g~~~~~~~~~~~pd 228 (375)
T PRK04260 153 NDLNSVKALVN---KNTAAVMLEL-VQGESGVLPADKDFVKALADYCQETGILLIVDEVQTGMGRTGKLYAFEHYGIEPD 228 (375)
T ss_pred CCHHHHHHhcC---CCeEEEEECC-eECCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccchhhhHhhCCCCC
Confidence 47888888774 4689999999 9999999999999999999999999999999999999999998888888899999
Q ss_pred eeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Q psy8199 486 FLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKAL 565 (965)
Q Consensus 486 ivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L 565 (965)
++||||++++| +|+|++++++++++.+.. ..+.+||++||++|+++.++|+.++.+++.+++++.++++++.|
T Consensus 229 i~t~sK~l~~G-~~ig~~~~~~~~~~~~~~------~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~~~~~l 301 (375)
T PRK04260 229 IFTLAKGLANG-VPVGAMLAKSSLGGAFGY------GSHGSTFGGNKLSMAAASATLDIMLTAGFLEQALENGNYLQEQL 301 (375)
T ss_pred EEEecccccCC-cceEEEEEcHHHHhhcCC------CCCCCCCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 99999999988 799999999999888754 24778999999999999999999987789999999999999999
Q ss_pred Hcc-cCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecC-CEEEEeCCcccCHHHHHHHHHhhhc
Q psy8199 566 TSL-ITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG-NTVYLMPPYILNKNEIQHMTSAIFQ 643 (965)
Q Consensus 566 ~~l-~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~-~~lR~~p~~~~t~~~i~~~~~~l~~ 643 (965)
.++ .+++.+..+++.|+++++++. .+ ...+.+.|.++||++.|.+ +.+||+||+.+++++++++++++.+
T Consensus 302 ~~~~~~~~~~~~~~~~g~~~~~~~~-~~-------~~~~~~~l~~~Gi~v~~~~~~~lR~~~~~~~t~~~i~~~l~~l~~ 373 (375)
T PRK04260 302 QKALQDKETVTTVRGLGYMIGIETT-AD-------LSQLVEAARDKGLIVLTAGTNVIRLLPPLTLTKEEIEQGIAILSE 373 (375)
T ss_pred HHHHhhCCCeeEEeccceEEEEEec-Cc-------HHHHHHHHHhCCCEEecCCCCEEEEcCCCccCHHHHHHHHHHHHH
Confidence 876 556667788999999999984 11 3468889999999998865 7899999999999999999998865
Q ss_pred c
Q psy8199 644 T 644 (965)
Q Consensus 644 ~ 644 (965)
+
T Consensus 374 ~ 374 (375)
T PRK04260 374 V 374 (375)
T ss_pred h
Confidence 3
|
|
| >cd00610 OAT_like Acetyl ornithine aminotransferase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-47 Score=435.23 Aligned_cols=380 Identities=36% Similarity=0.584 Sum_probs=319.7
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhH
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGAS 325 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGse 325 (965)
+|+||.||++|||+.+|++++++||+||+|++|+.++++...++....+.++...++++++++.++.+.++++|++||++
T Consensus 28 ~~~~d~dG~~~id~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgse 107 (413)
T cd00610 28 AYLYDVDGNRYLDFLSGIGVLNLGHNHPEVVEALKEQLAKLTHFSLGFFYNEPAVELAELLLALTPEGLDKVFFVNSGTE 107 (413)
T ss_pred CEEEeCCCCEEEEcCccHHhhccCCCCHHHHHHHHHHHHhCcCccCcccCCHHHHHHHHHHHHhCCCCCCEEEEcCcHHH
Confidence 89999999999999999999999999999999999999876555433346889999999999999766889999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHH
Q psy8199 326 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIAR 405 (965)
Q Consensus 326 A~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (965)
|++.|+++++.+ +++++|++++++|||++..++..++...+...+.+...++..+|.+..... .....
T Consensus 108 a~~~al~~~~~~------~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 175 (413)
T cd00610 108 AVEAALKLARAY------TGRKKIISFEGAYHGRTLGALSLTGSKKYRGGFGPLLPGVLHVPYPYRYRP------PAELA 175 (413)
T ss_pred HHHHHHHHHHHH------cCCCeEEEECCCcCCccHHHHHhcCCccccccCCCCCCCcEEeCCCccccc------hhhHH
Confidence 999999999877 578999999999999999998888765555555555555666665421110 01123
Q ss_pred HHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcc
Q psy8199 406 CAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPD 485 (965)
Q Consensus 406 ~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pD 485 (965)
.|+++|+++++++++++++|++|| +++++|.+.++++|+++|+++|++||+++|+||+|+||||+|..++++++++.||
T Consensus 176 ~d~~~l~~~l~~~~~~~~~vi~~p-~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~g~g~~g~~~~~~~~~~~~d 254 (413)
T cd00610 176 DDLEALEEALEEHPEEVAAVIVEP-IQGEGGVIVPPPGYLKALRELCRKHGILLIADEVQTGFGRTGKMFAFEHFGVEPD 254 (413)
T ss_pred HHHHHHHHHHhcCCCCEEEEEEcc-ccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcchhhHhhcCCCCC
Confidence 488999999976556899999999 9999999999999999999999999999999999999999998888888999999
Q ss_pred eeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Q psy8199 486 FLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKAL 565 (965)
Q Consensus 486 ivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L 565 (965)
++++||++++| +|+|++++++++++.+.. ..+.+++|+++||++++++.++|+.++++++.++++++++++++.|
T Consensus 255 ~~t~sK~l~~g-~~~g~~~~~~~~~~~~~~----~~~~~~~t~~~~~~~~~a~~a~l~~l~~~~~~~~~~~~~~~l~~~l 329 (413)
T cd00610 255 IVTLGKGLGGG-LPLGAVLGREEIMDAFPA----GPGLHGGTFGGNPLACAAALAVLEVLEEEGLLENAAELGEYLRERL 329 (413)
T ss_pred eEEEcccccCc-cccEEEEEcHHHHHhhcc----CCCCCCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 99999999998 899999999999988611 2245778999999999999999999987889999999999999999
Q ss_pred HcccC-CCceeeeeceeEEEEEEEeecCcc---chhhHHHHHHHHHHHcCcEEeec-CCEEEEeCCcccCHHHHHHHHHh
Q psy8199 566 TSLIT-HPKIINFRQKGMIWAFDVIIEDPE---QIETFSKKFFVAALKNELLLRPI-GNTVYLMPPYILNKNEIQHMTSA 640 (965)
Q Consensus 566 ~~l~~-~~~i~~v~g~G~~~~i~~~~~~~~---~~~~~~~~~~~~l~~~Gi~~~~~-~~~lR~~p~~~~t~~~i~~~~~~ 640 (965)
+++.. .+.+..+++.|.++.+.+. .+.. ........+.+.|.++||++.|. ++.+|++|++.++++++++++++
T Consensus 330 ~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~gv~v~~~~~~~lR~~~~~~~t~~~i~~~~~~ 408 (413)
T cd00610 330 RELAEKHPLVGDVRGRGLMIGIELV-KDRATKPPDKELAAKIIKAALERGLLLRPSGGNVIRLLPPLIITEEEIDEGLDA 408 (413)
T ss_pred HHHHhhCCcEEEeecCceEEEEEEe-cCCCcCCcchHHHHHHHHHHHHCCeEEeecCCCEEEEECCCcCCHHHHHHHHHH
Confidence 88733 4556678899999999986 2110 01123556888999999999987 47999999999999999999998
Q ss_pred hhcc
Q psy8199 641 IFQT 644 (965)
Q Consensus 641 l~~~ 644 (965)
+.++
T Consensus 409 l~~~ 412 (413)
T cd00610 409 LDEA 412 (413)
T ss_pred HHHh
Confidence 8653
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation. |
| >PRK02627 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-47 Score=433.88 Aligned_cols=360 Identities=33% Similarity=0.542 Sum_probs=307.8
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhH
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGAS 325 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGse 325 (965)
+|+||.|||+|||+.+|+++++|||+||+|.+|+.+++++..+.. ..+.++...+++++|++.. +.++++|++||+|
T Consensus 31 ~~~~d~dg~~~iD~~~g~~~~~lG~~~p~v~~a~~~~~~~~~~~~-~~~~~~~~~~la~~l~~~~--~~~~v~~~~gg~e 107 (396)
T PRK02627 31 ARLWDDDGKEYLDFLAGIAVNNLGHCHPKLVEAIQEQAAKLIHTS-NLYYIEPQEELAEKLVELS--GMDKVFFCNSGAE 107 (396)
T ss_pred CEEEeCCCCEEEECCccHHhccCCCCCHHHHHHHHHHHhhccccc-cccCCHHHHHHHHHHHhhc--CCCEEEECCCcHH
Confidence 899999999999999999999999999999999999998764432 3467899999999999986 5689999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHH
Q psy8199 326 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIAR 405 (965)
Q Consensus 326 A~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (965)
|+++|+++++.+....+. +++++++++++|||++..++++++...++..+.+...+...++.
T Consensus 108 A~~~al~~a~~~~~~~~~-~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 169 (396)
T PRK02627 108 ANEAAIKLARKYGHKKGI-EKPEIITAENSFHGRTLATLSATGQPKYQEGFEPLVEGFIYVPF----------------- 169 (396)
T ss_pred HHHHHHHHHHHHhcccCC-CCCeEEEECCCcCcccHHHHHhcCCccccccCCCCCCCceEeCC-----------------
Confidence 999999999987422221 23789999999999999999888765544444444444444443
Q ss_pred HHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcc
Q psy8199 406 CAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPD 485 (965)
Q Consensus 406 ~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pD 485 (965)
+|++++++++. +++++|++|| +++++|..+++++++++|+++|++||+++|+||+|+||||+|.+++++.+++.||
T Consensus 170 ~d~~~l~~~i~---~~~~~vii~p-~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DE~~~g~g~~g~~~~~~~~~~~pd 245 (396)
T PRK02627 170 NDIEALKAAIT---DKTAAVMLEP-IQGEGGVNPADKEYLQALRELCDENGILLILDEVQTGMGRTGKLFAYQHYGIEPD 245 (396)
T ss_pred CCHHHHHHhcC---CCeEEEEEec-ccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhcCCCccCceeeehhcCCCCC
Confidence 47888888883 5789999999 8999998888999999999999999999999999999999998888888899999
Q ss_pred eeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Q psy8199 486 FLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKAL 565 (965)
Q Consensus 486 ivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L 565 (965)
+++|||++++| +|+|++++++++++.+.. ..+.+||++||++|+++.++|+.++++++.++++++++++++.|
T Consensus 246 i~t~sK~~~~G-~rig~~~~~~~~~~~~~~------~~~~~t~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~~~~~l 318 (396)
T PRK02627 246 IMTLAKGLGGG-VPIGAVLAKEKVADVFTP------GDHGSTFGGNPLACAAALAVIEIIEEEGLLENAAEVGEYLRAKL 318 (396)
T ss_pred EEEEcchhhCC-cccEEEEEcHHHHhccCC------CCCCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH
Confidence 99999999988 799999999999988754 24778999999999999999999887889999999999999999
Q ss_pred Hcc-cCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecC-CEEEEeCCcccCHHHHHHHHHhhhc
Q psy8199 566 TSL-ITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG-NTVYLMPPYILNKNEIQHMTSAIFQ 643 (965)
Q Consensus 566 ~~l-~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~-~~lR~~p~~~~t~~~i~~~~~~l~~ 643 (965)
.++ .+++.+..+++.|+++++++. .+ ...+.+.|.++||++.|.+ +++||+|++.+++++++++++++.+
T Consensus 319 ~~~~~~~~~~~~~~~~g~~~~i~~~-~~-------~~~~~~~l~~~Gv~v~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~ 390 (396)
T PRK02627 319 RELLEKYPGIKEVRGLGLMIGIELD-RP-------AAEIVKKALEKGLLINVTGDNVLRLLPPLIISKEEIDEAVDRLEE 390 (396)
T ss_pred HHHHHhCCCeeeeccCcEEEEEEec-Cc-------HHHHHHHHHHCCeEEeecCCCEEEEECCcccCHHHHHHHHHHHHH
Confidence 887 556667788899999998873 11 3468888999999999865 7899999999999999999999876
Q ss_pred cc
Q psy8199 644 TF 645 (965)
Q Consensus 644 ~~ 645 (965)
.+
T Consensus 391 ~l 392 (396)
T PRK02627 391 VL 392 (396)
T ss_pred HH
Confidence 54
|
|
| >PRK06256 biotin synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-44 Score=399.91 Aligned_cols=320 Identities=35% Similarity=0.612 Sum_probs=286.7
Q ss_pred HHHHHHHhhhc-ccccHHHHHHhcCC---CchhHHHHHHHHHHHhcCCCeEEEeEeEeeccCCCCCCCCCCCCCCcCCCC
Q psy8199 633 EIQHMTSAIFQ-TFNELDEVINLFNL---PFNDLLFRAQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHYNTE 708 (965)
Q Consensus 633 ~i~~~~~~l~~-~~~~~~e~l~l~~~---~~~~l~~~a~~~~~~~~~g~~~~~~~~i~~~s~~C~~~C~fC~~~~~~~~~ 708 (965)
++..+.+++.. ...+.++++.||+. ++.+|+..|+++|++++ |+.+.++.+++++|++|+++|.||+++..++..
T Consensus 6 ~~~~~~~~~~~g~~~~~~e~~~ll~~~~~~~~~L~~~A~~~r~~~~-g~~v~~~~i~~~~s~~C~~~C~fC~~~~~~~~~ 84 (336)
T PRK06256 6 DILKLARKLLEGEGLTKEEALALLEIPDDDLLELLAAAYEVRKHFC-GKKVKLNTIINAKSGLCPEDCGYCSQSAGSSAP 84 (336)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHcCChHHHHHHHHHHHHHHHHhC-CCeEEEEEeeeccCCCCCCCCccCCCcCCCCCC
Confidence 45556666654 56788999999864 36788999999977766 899999999998899999999999998765544
Q ss_pred cccccCCCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHh-cCcEeEEecCCCCHHHHHHHHHhCCC
Q psy8199 709 ITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLD 787 (965)
Q Consensus 709 ~~~~~~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~-~~~~i~~~~~~~~~e~l~~Lk~aG~~ 787 (965)
...++.+++|+|+++++.+.+.|+.++++++++..+...++++++++++.+++ .++.++++.|.++++.++.|+++|++
T Consensus 85 ~~~~~~~s~eeI~~~~~~~~~~g~~~~~l~~~g~~p~~~~~~~~~e~i~~i~~~~~i~~~~~~g~l~~e~l~~LkeaG~~ 164 (336)
T PRK06256 85 VYRYAWLDIEELIEAAKEAIEEGAGTFCIVASGRGPSGKEVDQVVEAVKAIKEETDLEICACLGLLTEEQAERLKEAGVD 164 (336)
T ss_pred CceecCCCHHHHHHHHHHHHHCCCCEEEEEecCCCCCchHHHHHHHHHHHHHhcCCCcEEecCCcCCHHHHHHHHHhCCC
Confidence 44577789999999999999999999999887765555567899999999986 56788899999999999999999999
Q ss_pred eEeccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccccccC
Q psy8199 788 YYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIK 867 (965)
Q Consensus 788 ~i~i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~ 867 (965)
++.+++||+++.++++++.+++++++++++.++++|+.+++++|+|+|||.+|+.++++++++++ ++.++++.|+|.|
T Consensus 165 ~v~~~lEts~~~~~~i~~~~t~~~~i~~i~~a~~~Gi~v~~~~I~GlgEt~ed~~~~~~~l~~l~--~~~v~i~~l~P~p 242 (336)
T PRK06256 165 RYNHNLETSRSYFPNVVTTHTYEDRIDTCEMVKAAGIEPCSGGIIGMGESLEDRVEHAFFLKELD--ADSIPINFLNPIP 242 (336)
T ss_pred EEecCCccCHHHHhhcCCCCCHHHHHHHHHHHHHcCCeeccCeEEeCCCCHHHHHHHHHHHHhCC--CCEEeecccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeCCccccCCCCCChhhHHHHHHc
Q psy8199 868 GTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLLKKL 947 (965)
Q Consensus 868 gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~~~~~ 947 (965)
|||+++.+++++.++++++|++|+++|+..|+++++|+....+.+..++ +|||++|+|++ +|+.|.+.++|++||+++
T Consensus 243 GT~l~~~~~~~~~e~l~~ia~~Rl~~p~~~I~~~~gr~~~~~~~~~~~~-~g~~~~~~g~~-lt~~g~~~~~d~~~~~~~ 320 (336)
T PRK06256 243 GTPLENHPELTPLECLKTIAIFRLINPDKEIRIAGGREVNLRSLQPLGL-GGANSVIVGNY-LTTVGQPATADLDMIEDL 320 (336)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCCeeEecCchhhhchhhHHHHh-ccCceeeECCc-ccCCCCChHHHHHHHHHC
Confidence 9999999999999999999999999999999999999877788888888 89999999996 577788999999999999
Q ss_pred CCCcchhhhH
Q psy8199 948 GINTRNIKIK 957 (965)
Q Consensus 948 g~~~~~~~~~ 957 (965)
|+.+...+.+
T Consensus 321 g~~~~~~~~~ 330 (336)
T PRK06256 321 GFEIELDALK 330 (336)
T ss_pred CCCcccCcch
Confidence 9998665544
|
|
| >COG0564 RluA Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-45 Score=387.00 Aligned_cols=229 Identities=46% Similarity=0.647 Sum_probs=192.7
Q ss_pred cccCCEEEEEcCCCCCCCCcccccCCCccEEEecCcEEEEECCCCCeeeeCCCCCcccHHHHHHHHCCcccCCCCccccc
Q psy8199 2 IISGYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVH 81 (965)
Q Consensus 2 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~e~~~~lv~nKP~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~ 81 (965)
|..||+|.+..++.... .........++|||||++++|+|||+|++|||+.+....++...+..+.+.. ..++++||
T Consensus 52 l~~gd~i~~~~~~~~~~-~~~~~~~~~l~IlyED~~llVvnKP~Gl~vhp~~~~~~~tl~~~l~~~~~~~--~~~~~~vH 128 (289)
T COG0564 52 LKPGDVVRIPLPEEPEE-EKLVPEDIPLDILYEDEDLLVVNKPAGLVVHPGGGHHEGTLVNALLRHCQDG--VERPGIVH 128 (289)
T ss_pred eCCCCEEEEeccccccc-ccccccCCCccEEEecCCEEEEECCCCCcCcCCCCCccHhHHHHHHHhcccc--CCceeeec
Confidence 56788887755443321 1122233348899999999999999999999998777788999887775432 45789999
Q ss_pred cCCCCCceEEEeEeCHHHHHHHHHHHHcCCcCeEEEEEEcCccCCC-ceEeeccccCCCCCeeEEEccCCCCcceEEEEE
Q psy8199 82 RLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLN-GMINAAIMRNPHNRIKMTVSKNFNAKPALTYYE 160 (965)
Q Consensus 82 RLD~~tsGlll~a~~~~~~~~l~~~~~~~~~~K~Y~a~v~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~ 160 (965)
||||+||||||||||..+++.|+++|+++++.|+|+|+|.|.++++ +.++.++..+......+.+....++|+|.|.|+
T Consensus 129 RLDkdTSGlll~AK~~~a~~~l~~~f~~r~v~K~Y~Alv~G~~~~~~~~i~~pi~r~~~~~~~~~v~~~~~gk~A~T~~~ 208 (289)
T COG0564 129 RLDKDTSGLLLVAKNREAARELSEQFKQRKVKKTYLALVRGHLPEDEGTIDAPIGRDPKNRKKMAVVKEGSGKPAITHYE 208 (289)
T ss_pred cCCCCCceEEEEECCHHHHHHHHHHHhcCcCcEEEEEEEECcccCCCCEEeeeeecCCcCCceEEEeccCCCCceEEEEE
Confidence 9999999999999999999999999999999999999999999875 899999999988877777766444899999999
Q ss_pred EeEEeeccCCc-EEEEEEEeCCCcccHHHHHHHHhCCceecCCCCCccc-ccccccccccccccccccccccCcccccc
Q psy8199 161 RLATGIINKKH-ISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGKKY-SKSLIFNRQALHAYKLGLIHPKNNLKLKW 237 (965)
Q Consensus 161 ~~~~~~~~~~~-~s~~~~~~~tGr~hQIR~~~~~~g~pi~gD~~~~~~~-~~~~~~~~~~Lha~~l~f~~p~~~~~~~~ 237 (965)
++.+. .. +|+++|+|.||||||||+||+++||||+||++||... .....+.+++||++.+.|.||.++....+
T Consensus 209 ~l~~~----~~~~tlv~~~~~TGRTHQIRVHl~~lghPI~GD~~Yg~~~~~~~~~~~r~~LHA~~l~f~hp~t~~~~~~ 283 (289)
T COG0564 209 VLERF----GDNYTLVELKPETGRTHQIRVHLAHLGHPIVGDPLYGGKDKSAGAGLKRQALHAYKLSFTHPLTGEELEF 283 (289)
T ss_pred ehhcc----CCceEEEEEEeCCCCHhHHHHHHHHCCCCeeCCcccCCchhhcccCcchhhhhhceeEccCCCCCCEEEE
Confidence 99885 44 6999999999999999999999999999999999752 22234688999999999999998876654
|
|
| >PRK08444 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-44 Score=392.58 Aligned_cols=305 Identities=16% Similarity=0.198 Sum_probs=274.1
Q ss_pred cccccHHHHHHhcCCCchhHHHHHHHHHHHhcCCCeEEEe--EeEeeccCCCCCCCCCCCCCCcCCCCcccccCCCHHHH
Q psy8199 643 QTFNELDEVINLFNLPFNDLLFRAQKVHRKYFDANEIELA--VLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESV 720 (965)
Q Consensus 643 ~~~~~~~e~l~l~~~~~~~l~~~a~~~~~~~~~g~~~~~~--~~i~~~s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei 720 (965)
....+.+|++.|++.++.+|+..|+++|++++ |++++++ .+||+ ||.|.++|.||+|++..+.. ..|. +++|||
T Consensus 10 g~~ls~eeal~Ll~~dl~~L~~~A~~vR~~~~-G~~Vt~~~n~~In~-TN~C~~~C~FCaf~~~~~~~-~~y~-ls~eeI 85 (353)
T PRK08444 10 NERLNQEEAVKLYDLDLFTLGKYADKKRTKLH-GKKVYFNVNRHINP-TNICADVCKFCAFSAHRKNP-NPYT-MSHEEI 85 (353)
T ss_pred CCCCCHHHHHHHhhcCHHHHHHHHHHHHHHhc-CCEEEEEecCCccc-ccccccCCccCCCccCCCCC-cccc-CCHHHH
Confidence 35688999999998888999999999988887 8988776 78999 99999999999999865443 4565 899999
Q ss_pred HHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHhc--CcEeEE-----------ecCCCCHHHHHHHHHhCCC
Q psy8199 721 ITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI--GLETCL-----------TLGMLNENQAYRLKKVGLD 787 (965)
Q Consensus 721 ~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~--~~~i~~-----------~~~~~~~e~l~~Lk~aG~~ 787 (965)
++.++++.+.|+++|+|++|.++. .++++++++++.||+. ++.++. +.|...+|.+++||+||++
T Consensus 86 ~~~a~~a~~~G~~ei~iv~G~~p~--~~~e~y~e~ir~Ik~~~p~i~i~a~s~~Ei~~~a~~~g~~~~e~l~~LkeAGl~ 163 (353)
T PRK08444 86 LEIVKNSVKRGIKEVHIVSAHNPN--YGYEWYLEIFKKIKEAYPNLHVKAMTAAEVDFLSRKFGKSYEEVLEDMLEYGVD 163 (353)
T ss_pred HHHHHHHHHCCCCEEEEeccCCCC--CCHHHHHHHHHHHHHHCCCceEeeCCHHHHHHHHHHcCCCHHHHHHHHHHhCcc
Confidence 999999999999999999998763 4789999999999974 577776 7889999999999999999
Q ss_pred eEec-cCCC-CHHHHhcccCCCC-HHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeecccc
Q psy8199 788 YYNH-NLDT-SPKLYGDIISTRD-YENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLV 864 (965)
Q Consensus 788 ~i~i-~~es-~~~~~~~i~~~~~-~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~ 864 (965)
++.. +.|. ++++++.|+++|. .++|++.++.+|++|+++++++|||+|||++|+++++..|++++ .++++++.|+
T Consensus 164 ~~~g~~aEi~~~~vr~~I~p~k~~~~~~~~i~~~a~~~Gi~~~sg~l~G~gEt~edrv~hl~~Lr~Lq--~~t~gf~~fI 241 (353)
T PRK08444 164 SMPGGGAEIFDEEVRKKICKGKVSSERWLEIHKYWHKKGKMSNATMLFGHIENREHRIDHMLRLRDLQ--DKTGGFNAFI 241 (353)
T ss_pred cCCCCCchhcCHHHHhhhCCCCCCHHHHHHHHHHHHHcCCCccceeEEecCCCHHHHHHHHHHHHHhc--cccCCceEEE
Confidence 9999 5899 9999999999775 58899999999999999999999999999999999999999999 8999999999
Q ss_pred cc----CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccE---EeeCCccccCCC---
Q psy8199 865 QI----KGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANS---IFYGDKLLTTDN--- 934 (965)
Q Consensus 865 P~----~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~---~~~g~~~~t~~~--- 934 (965)
|. +||||++.+++++.+++|++|++|+++|++ .+|+++|..++.+.++.+|.+|||+ ++.++++....|
T Consensus 242 p~~f~~~~t~l~~~~~~~~~e~Lr~iAi~Rl~L~~i-~ni~a~w~~~g~~~~q~~L~~Ga~D~ggt~~~e~i~~~ag~~~ 320 (353)
T PRK08444 242 PLVYQRENNYLKVEKFPSSQEILKTIAISRILLDNI-PHIKAYWATLTLNLALVAQEFGANDLDGTIEKESIQSAAGAKS 320 (353)
T ss_pred ecccCCCCCcCCCCCCCCHHHHHHHHHHHHHhcCCC-CccccccccCcHHHHHHHHhcCCccCccccccccchhhccCCC
Confidence 99 999999888899999999999999999985 6899999999999999999999995 456677665444
Q ss_pred ---CCChhhHHHHHHcCCCcchhhh
Q psy8199 935 ---TKTNDDSKLLKKLGINTRNIKI 956 (965)
Q Consensus 935 ---~~~~~~~~~~~~~g~~~~~~~~ 956 (965)
.+.++..++++++|++|++|+.
T Consensus 321 ~~~~~~~~l~~~i~~~g~~p~~R~t 345 (353)
T PRK08444 321 ANGLSLEDFIFLIKDSGFIPVERDS 345 (353)
T ss_pred CCCCCHHHHHHHHHHcCCCeeeecC
Confidence 3678999999999999999975
|
|
| >PRK08508 biotin synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-44 Score=378.14 Aligned_cols=272 Identities=36% Similarity=0.588 Sum_probs=251.3
Q ss_pred CeEEEeEeEeeccCCCCCCCCCCCCCCcCCCCcccccCCCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHH
Q psy8199 677 NEIELAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMI 756 (965)
Q Consensus 677 ~~~~~~~~i~~~s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~ 756 (965)
|++.+|++++++|++|+++|.||+|++.++.....|+.+++|+|++.++++.+.|+++|++++++..+...+++++++++
T Consensus 2 ~~~~~~~i~~~~s~gC~~~C~FCa~~~~~~~~~~~y~~~s~eeI~~~a~~a~~~g~~~~~lv~sg~~~~~~~~e~~~ei~ 81 (279)
T PRK08508 2 KEIFLCAISNISSGNCKEDCKYCTQSAHYKADIKRYKRKDIEQIVQEAKMAKANGALGFCLVTSGRGLDDKKLEYVAEAA 81 (279)
T ss_pred CeEEEEEEeccccCCCCCCCcCCCCcccCCCCCccccCCCHHHHHHHHHHHHHCCCCEEEEEeccCCCCcccHHHHHHHH
Confidence 67999999999999999999999999866555567887899999999999999999999998766654566889999999
Q ss_pred HHHHhc--CcEeEEecCCCCHHHHHHHHHhCCCeEeccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEec
Q psy8199 757 CEVKKI--GLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL 834 (965)
Q Consensus 757 ~~i~~~--~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl 834 (965)
+.+|+. ++.++.+.|.++++.+++||+||++++++++||+++.|+++++.++|++++++++.++++|+++++++|+|+
T Consensus 82 ~~ik~~~p~l~i~~s~G~~~~e~l~~Lk~aGld~~~~~lEt~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~sg~I~Gl 161 (279)
T PRK08508 82 KAVKKEVPGLHLIACNGTASVEQLKELKKAGIFSYNHNLETSKEFFPKICTTHTWEERFQTCENAKEAGLGLCSGGIFGL 161 (279)
T ss_pred HHHHhhCCCcEEEecCCCCCHHHHHHHHHcCCCEEcccccchHHHhcCCCCCCCHHHHHHHHHHHHHcCCeecceeEEec
Confidence 999975 566777999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHH
Q psy8199 835 SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAF 914 (965)
Q Consensus 835 ~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~ 914 (965)
|||.||+++++..+++++ +++||++.|.|.+|||++. ++.+++++++++|++|+++|+..|+++++|+.+..+.+..
T Consensus 162 GEt~ed~~~~l~~lr~L~--~~svpl~~~~p~~~t~~~~-~~~~~~~~lr~iAv~Rl~lp~~~i~~~~gr~~~~~~~~~~ 238 (279)
T PRK08508 162 GESWEDRISFLKSLASLS--PHSTPINFFIPNPALPLKA-PTLSADEALEIVRLAKEALPNARLMVAGGREVVFGERQYE 238 (279)
T ss_pred CCCHHHHHHHHHHHHcCC--CCEEeeCCcCCCCCCCCCC-CCCCHHHHHHHHHHHHHHCCCceeeecCChhhhchhhHHH
Confidence 999999999999999999 8999999999999999975 5689999999999999999999999999998766778889
Q ss_pred HhhcCccEEeeCCccccCCCCCChhhHHHHHHcCCCcc
Q psy8199 915 CFLAGANSIFYGDKLLTTDNTKTNDDSKLLKKLGINTR 952 (965)
Q Consensus 915 ~l~~Gan~~~~g~~~~t~~~~~~~~~~~~~~~~g~~~~ 952 (965)
++.+|||++++|++ +|+.|+++++|.+|++++|+.+.
T Consensus 239 ~~~~g~n~~~~g~~-lt~~g~~~~~d~~~~~~~~~~~~ 275 (279)
T PRK08508 239 IFEAGANAIVIGDY-LTTKGEAPKKDIEKLKSLGFEIA 275 (279)
T ss_pred HHhcCCcceeecCc-ccCCCCChHHHHHHHHHcCCCcC
Confidence 99999999999995 68888999999999999999876
|
|
| >KOG1405|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-44 Score=362.98 Aligned_cols=379 Identities=24% Similarity=0.356 Sum_probs=301.1
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHH-HHhh-c-cccccCCCCcHH-HHHHHHHHHhhcCCCCCeEEEcC
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKN-QLNK-L-EHVMLSNLTHKP-VIKLSEKLSSLTQYKLGHCFYGS 321 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~-~~~~-~-~~~~~~~~~~~~-~~~la~~l~~~~~~~~~~v~~~~ 321 (965)
.|++|+|||.+||.++.+.+.++||+||.+++++.. ++.. + .......++... .+.+.+.+....|.+.++|++.-
T Consensus 68 NYlvDvDGN~lLDvYsQIsSvplGYn~P~LvK~a~~p~~~~~lvnRPALg~fP~kd~~~~l~~~ll~~APKG~~~v~tm~ 147 (484)
T KOG1405|consen 68 NYLVDVDGNRLLDVYSQISSVPLGYNNPALVKAAQQPQNATMLVNRPALGNFPPKDFAEKLRQSLLSIAPKGQKQVITML 147 (484)
T ss_pred ceEEecCCCeeehhhhhhcccccCCCCHHHHHHhcChHHHHHHhccccccCCChhhHHHHHHHHHHhhCcchHHHHHHHh
Confidence 799999999999999999999999999999998764 3222 1 111222333333 34444456677888899999999
Q ss_pred ChhHHHHHHHHHHHHHHHhc--CC------------------CCceEEEEEcCCccCCccccccccCCcCccchhcccCC
Q psy8199 322 DGASAVEVALKMSFHYWYNK--GF------------------LNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLN 381 (965)
Q Consensus 322 sGseA~~~Al~~a~~~~~~~--g~------------------~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~ 381 (965)
+||.|||.|+|.+.-|++.+ |. ++.-.|++|.++|||++.+.++.+.....+....|..
T Consensus 148 cGs~aNEnA~K~afiwy~~k~rg~~~~s~~e~eScm~n~aPg~P~lsvlsF~gaFHGR~~g~lstT~SKpIHKldiPaF- 226 (484)
T KOG1405|consen 148 CGSCANENAYKTAFIWYRAKERGQAGFSAEELESCMINQAPGAPDLSVLSFKGAFHGRTFGSLSTTHSKPIHKLDIPAF- 226 (484)
T ss_pred ccccccHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHhcCCCCCCceeeeeeccccccccccccccccCccccccCCCCC-
Confidence 99999999999998876543 21 1245699999999999999999998776666544433
Q ss_pred CeeEecCCCCCCCCCCCChh--HHHHHHHHHHHHHHHhCC---CcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcC
Q psy8199 382 KTYIITTPDSRNINKGNSAN--EIARCAIFDLEILLKKNH---NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYN 456 (965)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~--~~~~~d~~~le~~l~~~~---~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g 456 (965)
++...++|.+..+.+....+ ..+..|++++|++|.++. ..+|+||+|| ||++||....+++|++.|+++|++||
T Consensus 227 dWPiA~fP~ykYPLdenv~~N~ked~~Cl~~Ve~li~~~~~k~~pVaaiIvEP-IQsEGGDnhaSp~Ff~kLrdi~~Kh~ 305 (484)
T KOG1405|consen 227 DWPIAPFPRYKYPLDENVAENKKEDQGCLAEVEDLIVKYRKKKKPVAAIIVEP-IQSEGGDNHASPDFFRKLRDITKKHG 305 (484)
T ss_pred CCCCCCCccccCChhhhhhhhhhhhhhHHHHHHHHHHHHhhcCCCeEEEEeec-hhccCCCccCCHHHHHHHHHHHHhcC
Confidence 33344555443333211111 145678999999998763 5799999999 99999999999999999999999999
Q ss_pred CeEEEeccccCCCcccccccccccCC--Ccceeeecccc-CCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHH
Q psy8199 457 IHLIADEIAVGCGRTGKFFACEHAEI--WPDFLCLSKGI-TGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPL 533 (965)
Q Consensus 457 ~llI~DEv~tg~gr~G~~~~~~~~~~--~pDivt~sK~l-~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~ 533 (965)
+.+|+||||||.|-||++|+++++++ .||+|||||-+ +||| .-.+++ +. -.++.+..|+.|.|.
T Consensus 306 v~fivDEVQTGgGaTGk~WaHehw~l~~PpD~vTFSKK~q~gGf------fh~~~f----rp---n~pYrifNTWmGdP~ 372 (484)
T KOG1405|consen 306 VAFIVDEVQTGGGATGKFWAHEHWNLDSPPDVVTFSKKFQTGGF------FHDEEF----RP---NEPYRIFNTWMGDPS 372 (484)
T ss_pred eEEEeeeeecCCCccCceeeehhcCCCCCccceehhhhhhcCcc------ccCccc----CC---CchHHHhhhhcCChH
Confidence 99999999999999999999999988 59999999966 5553 222222 21 234567789999999
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcc-cCCCc-eeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcC
Q psy8199 534 ACCAALATLEIFNKDNILQRISQDMKKITKALTSL-ITHPK-IINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNE 611 (965)
Q Consensus 534 ~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l-~~~~~-i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~G 611 (965)
-+....++++.+.+++++++++..|+.|..+|.++ +++|+ +..+||+|.|+++++. + .+..+++...++-+|
T Consensus 373 k~lll~~vv~~I~~~~Ll~n~~~vG~~l~~gL~~Lq~~~p~~~~~~RGrGTF~a~d~p--s----~~~Rdk~i~~~~~nG 446 (484)
T KOG1405|consen 373 KNLLLEEVVQEIKREDLLNNVAHVGKALLKGLLELQAKYPGKINNLRGRGTFIAWDCP--S----GSIRDKLILIARLNG 446 (484)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhcccccceEEEEeCC--C----hHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999 77886 5699999999999986 2 345667888999999
Q ss_pred cEEeecC-CEEEEeCCcccCHHHHHHHHHhhhccc
Q psy8199 612 LLLRPIG-NTVYLMPPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 612 i~~~~~~-~~lR~~p~~~~t~~~i~~~~~~l~~~~ 645 (965)
+-+..+| ..|||.|+++..+...+-+++++.+.+
T Consensus 447 v~~GGCg~~siRfRPsLvf~~~Ha~i~l~~~~k~l 481 (484)
T KOG1405|consen 447 VNLGGCGDKSIRFRPSLVFRKHHADIFLDIFDKIL 481 (484)
T ss_pred ceecccccceeeeccceeehhhhHHHHHHHHHHHh
Confidence 9887665 689999999999999999988887654
|
|
| >KOG2900|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-45 Score=346.76 Aligned_cols=308 Identities=50% Similarity=0.873 Sum_probs=288.6
Q ss_pred cHHHHHHhcCCCchhHHHHHHHHHHHhcCCCeEEEeEeEeeccCCCCCCCCCCCCCCcCCCCcccccCCCHHHHHHHHHH
Q psy8199 647 ELDEVINLFNLPFNDLLFRAQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQK 726 (965)
Q Consensus 647 ~~~e~l~l~~~~~~~l~~~a~~~~~~~~~g~~~~~~~~i~~~s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~ 726 (965)
+.++..++|+.++.+|..+|+.++|+.+.+.+|+.|++++++|+||..+|+||+++..+..+.+.-+++..+++++++++
T Consensus 49 tr~eik~iYdtPLldL~f~aa~~HRk~Hdp~kVQqCTLlsIKtGGCsEDCkYCaQSSRy~TGvKA~klmk~DeVi~~Ak~ 128 (380)
T KOG2900|consen 49 TRSEIKEIYDTPLLDLTFAAALQHRKWHDPTKVQQCTLLSIKTGGCSEDCKYCAQSSRYDTGVKAEKLMKVDEVIKEAKE 128 (380)
T ss_pred cHHHHHHHhcchHHHHHHHHHHHHhhhCCccceeeeEEEEeecCCcccccchhhhhcccccchhHHHHhhHHHHHHHHHH
Confidence 45678888999999999999999999998899999999999999999999999999888888888888999999999999
Q ss_pred HHHCCCCEEEEeeccCCCCc--ccHHHHHHHHHHHHhcCcEeEEecCCCCHHHHHHHHHhCCCeEeccCCCCHHHHhccc
Q psy8199 727 AKSDGATRFCMGAAWRELKD--RDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDII 804 (965)
Q Consensus 727 ~~~~g~~~i~l~~g~~~~~~--~~~~~~~~~~~~i~~~~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~~es~~~~~~~i~ 804 (965)
+++.|-.+||+...+.+... ..+.+++|+++.++..++++|++.|.++++..+.||+||+..++++++|+.+.|.++-
T Consensus 129 AK~~GSTRFCmGaAWRD~~GRk~~fk~IlE~ikevr~MgmEvCvTLGMv~~qQAkeLKdAGLTAYNHNlDTSREyYskvI 208 (380)
T KOG2900|consen 129 AKRNGSTRFCMGAAWRDMKGRKSAFKRILEMIKEVRDMGMEVCVTLGMVDQQQAKELKDAGLTAYNHNLDTSREYYSKVI 208 (380)
T ss_pred HHhcCCceeecchhhhhhccchhHHHHHHHHHHHHHcCCceeeeeeccccHHHHHHHHhccceecccCccchhhhhcccc
Confidence 99999999999887764322 3478899999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCC--CCCCCHHHH
Q psy8199 805 STRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYG--SSILDPLEF 882 (965)
Q Consensus 805 ~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~--~~~~~~~~~ 882 (965)
...+|++++++|+.++++||++|++-|+||||..+|++-.+..|..+..+|.++|++.++|.+|||+.+ ..+....++
T Consensus 209 tTRtYDdRL~Ti~nvr~aGikvCsGGIlGLGE~e~DriGlihtLatmp~HPESvPiN~LvaikGTP~~d~~~k~l~i~e~ 288 (380)
T KOG2900|consen 209 TTRTYDDRLQTIKNVREAGIKVCSGGILGLGESEDDRIGLIHTLATMPPHPESVPINRLVAIKGTPMADEKSKKLQIDEI 288 (380)
T ss_pred eecchHHHHHHHHHHHHhcceecccccccccccccceeeeeeeeccCCCCCcccccceEEecCCcccchhhcccccHHHH
Confidence 999999999999999999999999999999999999999999999998889999999999999999998 677889999
Q ss_pred HHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeCCccccCCCCCChhhHHHHHHcCCCcchh
Q psy8199 883 IRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLLKKLGINTRNI 954 (965)
Q Consensus 883 ~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~~~~~g~~~~~~ 954 (965)
++.|+.+|+++|..+|+++++|..+...-+.+++.+|||++|.|++.+|+++-+-++|..|+..+|..|+..
T Consensus 289 lR~IaTARIvMPKaiiRlaAGR~t~sesEQalcFmAGaNsiFTGeKmLTTp~n~wD~D~~mf~~wGL~pm~~ 360 (380)
T KOG2900|consen 289 LRTIATARIVMPKAIIRLAAGRYTMSESEQALCFMAGANSIFTGEKMLTTPCNGWDEDKAMFAKWGLQPMEA 360 (380)
T ss_pred HHHHhhhheechHHHHHHhccccccchhHHHHHHHhCCccceechhhhcCCCCCcchHHHHHHHcCCCcCcc
Confidence 999999999999999999999998877778899999999999999999999989999999999999998654
|
|
| >TIGR00707 argD acetylornithine and succinylornithine aminotransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-42 Score=387.23 Aligned_cols=359 Identities=34% Similarity=0.546 Sum_probs=295.5
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhH
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGAS 325 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGse 325 (965)
+++||.||++||||.+|+|+++|||+||.|.+++.+++++..+.. ..+.++...+++++++++++ .+++++++||++
T Consensus 19 ~~~~~~~g~~~id~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~la~~~g--~~~~~~~~sg~~ 95 (379)
T TIGR00707 19 AYVYDVNGKEYLDFVAGIAVNSLGHAHPKLVEALKEQLEKLVHVS-NLYYTEPQEELAEKLVEHSG--ADRVFFCNSGAE 95 (379)
T ss_pred CEEEeCCCCEEEEcCcchhhccCCCCCHHHHHHHHHHHhhccccc-cccCCHHHHHHHHHHHhhCC--CCEEEEeCCcHH
Confidence 899999999999999999999999999999999999998864332 34578889999999999985 579999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHH
Q psy8199 326 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIAR 405 (965)
Q Consensus 326 A~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (965)
|++.|+++++.+....| +++++|++++++|||++..+...++...+...+.+...+..+++.
T Consensus 96 a~~~a~~~~~~~~~~~~-~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 157 (379)
T TIGR00707 96 ANEAALKLARKYTGDKG-KEKKKIIAFENSFHGRTMGALSATGQPKYQKGFEPLVPGFSYAPY----------------- 157 (379)
T ss_pred HHHHHHHHHHHHhhccC-CCCCeEEEECCCcCCccHHHHHhcCChhhhccCCCCCCCceeeCC-----------------
Confidence 99999998877642222 236899999999999998888877654433222333333333332
Q ss_pred HHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcc
Q psy8199 406 CAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPD 485 (965)
Q Consensus 406 ~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pD 485 (965)
+|++++++.+. +++++|++|| +++++|...++.+++++|.++|++||+++|+||+|+|||+.|.++++...++.||
T Consensus 158 ~d~~~l~~~~~---~~~~~v~~~p-~~~~~g~~~~~~~~l~~i~~l~~~~~~~~i~De~~~~~~~~g~~~~~~~~~~~~d 233 (379)
T TIGR00707 158 NDIESLKKAID---DETAAVIVEP-IQGEGGVNPASAEFLKALREICKDKDALLIFDEVQTGIGRTGKFFAYEHYGIEPD 233 (379)
T ss_pred CCHHHHHHHhh---hCeeEEEEEc-cccCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhhhHHhcCCCCC
Confidence 46888888885 3578899999 8888888778999999999999999999999999999999887666667788999
Q ss_pred eeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Q psy8199 486 FLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKAL 565 (965)
Q Consensus 486 ivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L 565 (965)
++||||++++| +|+|++++++++++.+.. ..++.+|++|+++++++.++|+.++.+++.+++++++++++++|
T Consensus 234 ~~t~sK~~~~G-~riG~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~aa~aaL~~~~~~~~~~~~~~~~~~~~~~l 306 (379)
T TIGR00707 234 IITLAKGLGGG-VPIGATLAKEEVAEAFTP------GDHGSTFGGNPLACAAALAVLEVIEKERLLENVKEKGDYFKERL 306 (379)
T ss_pred EEEEcccccCC-cccEEEEEcHHHHhhhcC------CCCCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 99999999977 899999999999988864 23567888999999999999998877778899999999999999
Q ss_pred HcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecC-CEEEEeCCcccCHHHHHHHHHhhhcc
Q psy8199 566 TSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG-NTVYLMPPYILNKNEIQHMTSAIFQT 644 (965)
Q Consensus 566 ~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~-~~lR~~p~~~~t~~~i~~~~~~l~~~ 644 (965)
+++.....+..+++.|.++.+.+. .+ ...+.+.|.++||++.|.+ +.+|++|++.+++++++++++++.+.
T Consensus 307 ~~~~~~~~~~~~~~~g~~~~~~~~-~~-------~~~~~~~l~~~Gv~v~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~ 378 (379)
T TIGR00707 307 EELGKNYPNKEVRGKGLMLGIELE-AP-------CKDIVKKALEKGLLVNCAGPKVLRFLPPLIITKEEIDEAVSALEEA 378 (379)
T ss_pred HHHHhhCCCCccccCceEEEEEec-Cc-------HHHHHHHHHHCCcEEeeCCCCEEEEECCCcCCHHHHHHHHHHHHHh
Confidence 876221223456678898888774 11 3467888999999999876 79999999999999999999988653
|
Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097) |
| >PRK05926 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=371.79 Aligned_cols=318 Identities=14% Similarity=0.134 Sum_probs=270.1
Q ss_pred HHHHHHHHhhhc-ccccHHHHHHhcC----CCchhHHHHHHHHHHHhcCCCeEEEeEeEee-ccCCCCCCCCCCCCCCcC
Q psy8199 632 NEIQHMTSAIFQ-TFNELDEVINLFN----LPFNDLLFRAQKVHRKYFDANEIELAVLLSI-KTGGCTEDCGYCPQSTHY 705 (965)
Q Consensus 632 ~~i~~~~~~l~~-~~~~~~e~l~l~~----~~~~~l~~~a~~~~~~~~~g~~~~~~~~i~~-~s~~C~~~C~fC~~~~~~ 705 (965)
..+..+.+++.. ...+.+|++.||+ .++.+|+..|+++|++++ |+.++++.++++ .||.|+.+|.||+|++.
T Consensus 13 ~~~~~~~~kv~~g~~ls~eeal~Ll~~~~~~~l~~L~~~A~~iR~~~~-G~~V~~~~~~nin~Tn~C~~dC~FCaf~~~- 90 (370)
T PRK05926 13 SWLKTLFDDYLSGARLSEEDALQLLLLTDAEDQRALWSFADLIRANRV-GDTVYYSSTLYLYPTNFCQFNCTFCSFYAK- 90 (370)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHhCCCchHHHHHHHHHHHHHHHhc-CCeEEEEEeeeeecCCCCCCCCCccccccC-
Confidence 345667777654 5688899999983 346789999999988877 999999988765 69999999999998864
Q ss_pred CCCcccccCCCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHhc--CcEeEEec-----------CC
Q psy8199 706 NTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI--GLETCLTL-----------GM 772 (965)
Q Consensus 706 ~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~--~~~i~~~~-----------~~ 772 (965)
.....++.+++|||++.++++ +.|+++|+|++|.++ ..+++++.++++.|++. ++.++... +.
T Consensus 91 -~~~~~~~~ls~eeI~~~a~~a-~~G~~ei~iv~G~~p--~~~~e~~~e~i~~Ik~~~p~i~i~a~s~~Ei~~~~~~~~~ 166 (370)
T PRK05926 91 -PGDPKGWFYTPDQLVQSIKEN-PSPITETHIVAGCFP--SCNLAYYEELFSKIKQNFPDLHIKALTAIEYAYLSKLDNL 166 (370)
T ss_pred -CCCcccccCCHHHHHHHHHHH-hcCCCEEEEEeCcCC--CCCHHHHHHHHHHHHHhCCCeeEEECCHHHHHHHHhhcCC
Confidence 233455669999999999998 689999999998765 46899999999999985 45555432 44
Q ss_pred CCHHHHHHHHHhCCCeEecc-CCC-CHHHHhcccCC-CCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHH
Q psy8199 773 LNENQAYRLKKVGLDYYNHN-LDT-SPKLYGDIIST-RDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLA 849 (965)
Q Consensus 773 ~~~e~l~~Lk~aG~~~i~i~-~es-~~~~~~~i~~~-~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~ 849 (965)
.+++.+++||+||++++.++ .|+ +++..+.++++ .++++|+++++.+|++|+++++++|+|+|||++|+++++..|+
T Consensus 167 ~~~e~l~~LkeAGl~~~~g~GaEi~~e~~r~~~~p~~~t~~e~l~~i~~a~~~Gi~~~sgmi~G~gEt~edrv~~l~~Lr 246 (370)
T PRK05926 167 PVKEVLQTLKIAGLDSIPGGGAEILVDEIRETLAPGRLSSQGFLEIHKTAHSLGIPSNATMLCYHRETPEDIVTHMSKLR 246 (370)
T ss_pred CHHHHHHHHHHcCcCccCCCCchhcCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCcccCceEEeCCCCHHHHHHHHHHHH
Confidence 67899999999999999985 999 89999999874 4789999999999999999999999999999999999999999
Q ss_pred hcCCCCCceeeccccc----cCCCCCCC----CCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCcc
Q psy8199 850 NLNPYPESVPINNLVQ----IKGTPLYG----SSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGAN 921 (965)
Q Consensus 850 ~l~~~~~~i~~~~~~P----~~gT~l~~----~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan 921 (965)
+++ .+++++..|+| +++||+.. .+..+..+.+|++|++|++||+. .+++++|..+|.+..+.+|.+|||
T Consensus 247 ~Lq--~~t~gf~~fIp~~f~~~~t~l~~~~~~~~~~~~~~~lr~~AvaRl~l~n~-~~iqa~w~~~G~~~~q~~L~~Gan 323 (370)
T PRK05926 247 ALQ--DKTSGFKNFILLKFASENNALGKRLRKMGSRHSIPPASIIAVARLFLDNF-PNIKALWNYLGIEVALHLLSCGAN 323 (370)
T ss_pred hcC--CccCCeeeeEecccCCCCCcccccccccCCCChHHHHHHHHHHHHhcCCC-cccccCchhcCHHHHHHHHhCCCc
Confidence 999 89999999998 78999864 33578899999999999999986 999999999999999999999999
Q ss_pred E---EeeCCccccCCC------CCChhhHHHHHHcCCCcchhhhHH
Q psy8199 922 S---IFYGDKLLTTDN------TKTNDDSKLLKKLGINTRNIKIKM 958 (965)
Q Consensus 922 ~---~~~g~~~~t~~~------~~~~~~~~~~~~~g~~~~~~~~~~ 958 (965)
+ ++.++++.+..| .++++..++|+++|++|++|+...
T Consensus 324 D~ggt~~~e~i~~~ag~~~~~~~~~~~~~~~i~~~g~~p~~rd~~~ 369 (370)
T PRK05926 324 DLSSTHQGEKVFQMASSQEPIKMDIEGMAHLITQQGRIPCLTNSKT 369 (370)
T ss_pred cCccccccchhhhccCCCCCCCCCHHHHHHHHHHcCCCceecCCCC
Confidence 6 445666654444 256889999999999999998653
|
|
| >TIGR00433 bioB biotin synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=361.96 Aligned_cols=292 Identities=50% Similarity=0.876 Sum_probs=254.8
Q ss_pred cCCCchhHHHHHHHHHHHhcCCCeEEEeEeEeeccCCCCCCCCCCCCCCcCCCCcccccCCCHHHHHHHHHHHHHCCCCE
Q psy8199 655 FNLPFNDLLFRAQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATR 734 (965)
Q Consensus 655 ~~~~~~~l~~~a~~~~~~~~~g~~~~~~~~i~~~s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~ 734 (965)
++.++.+++..|+++++++++|+.+.++++++++|++|+++|.||+++..+......++.+++++++++++++.+.|+++
T Consensus 2 ~~~~~~~l~~~a~~~~~~~~~~~~v~~~~~~~i~s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~ 81 (296)
T TIGR00433 2 FETPLLDLLYEAFQIHRKHFDPRKVQLCTIMNIKSGGCPEDCKYCSQSSRSKTGLPIERLKKVDEVLEEARKAKAAGATR 81 (296)
T ss_pred ccCcHHHHHHHHHHHHHHhcCCCEEEEEEEEecccCCCCCCCcCCCCcccCCCCCccccCCCHHHHHHHHHHHHHCCCCE
Confidence 44478899999999999988899999999999889999999999999875433334566789999999999999999999
Q ss_pred EEEeeccCCCCccc-HHHHHHHHHHHHhcCcEeEEecCCCCHHHHHHHHHhCCCeEeccCCCCHHHHhcccCCCCHHHHH
Q psy8199 735 FCMGAAWRELKDRD-LDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRL 813 (965)
Q Consensus 735 i~l~~g~~~~~~~~-~~~~~~~~~~i~~~~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~~es~~~~~~~i~~~~~~~~~~ 813 (965)
+++++++..+.... .+++.++.+.+++.++.++++.|.+++|.++.||+||++.+.+++|+++++++++++++++++++
T Consensus 82 ~~l~~~g~~~~~~~~~~~~~~i~~~~~~~~i~~~~~~g~~~~e~l~~Lk~aG~~~v~i~~E~~~~~~~~i~~~~s~~~~~ 161 (296)
T TIGR00433 82 FCLVASGRGPKDREFMEYVEAMVQIVEEMGLKTCATLGLLDPEQAKRLKDAGLDYYNHNLDTSQEFYSNIISTHTYDDRV 161 (296)
T ss_pred EEEEEecCCCChHHHHHHHHHHHHHHHhCCCeEEecCCCCCHHHHHHHHHcCCCEEEEcccCCHHHHhhccCCCCHHHHH
Confidence 98876544333333 44455555555567888889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q psy8199 814 NTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITM 893 (965)
Q Consensus 814 ~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~~~~~~~~~~~~~ia~~R~~l 893 (965)
++++.++++|+++++++|+|++||.+++.++++++++++ ++.+++++++|.|||++++.++++.++++++++.+|+++
T Consensus 162 ~ai~~l~~~Gi~v~~~~i~Gl~et~~d~~~~~~~l~~l~--~~~i~l~~l~p~~gT~l~~~~~~s~~~~~~~ia~~r~~l 239 (296)
T TIGR00433 162 DTLENAKKAGLKVCSGGIFGLGETVEDRIGLALALANLP--PESVPINFLVKIKGTPLADNKELSADDALKTIALARIIM 239 (296)
T ss_pred HHHHHHHHcCCEEEEeEEEeCCCCHHHHHHHHHHHHhCC--CCEEEeeeeEEcCCCccCCCCCCCHHHHHHHHHHHHHHC
Confidence 999999999999999999999999999999999999999 999999999999999999998999999999999999999
Q ss_pred CCCceecccccc-ccchhhHHHHhhcCccEEeeCCccccCCCCCCh-hhHHHHHHcCC
Q psy8199 894 PTSRIRMSAGRK-EMGETTQAFCFLAGANSIFYGDKLLTTDNTKTN-DDSKLLKKLGI 949 (965)
Q Consensus 894 p~~~i~i~~~~~-~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~-~~~~~~~~~g~ 949 (965)
|+..|++.+++. .++...++.++.+|||++++|++ +|+.|.+.. +|..|++++|+
T Consensus 240 p~~~i~~~~~~~~~~~~~~~~~~l~~G~n~i~~g~~-~~~~g~~~~~~~~~~~~~~~~ 296 (296)
T TIGR00433 240 PKAEIRLAGGREVNMRELQQAMCFMAGANSIFVGDY-LTTTGNPEEDKDKKLLAKLGL 296 (296)
T ss_pred CcceEEEeCCcchhhhhhHHHHHHHhcCceEEEcCc-ccCCCCCCcHHHHHHHHHcCC
Confidence 999899888886 44444444599999999999995 577777777 99999999986
|
Catalyzes the last step of the biotin biosynthesis pathway. |
| >PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-41 Score=371.28 Aligned_cols=316 Identities=21% Similarity=0.280 Sum_probs=274.9
Q ss_pred ccCHHHHHHHHHhhhcccccHHHHHHhcCC----CchhHHHHHHHHHHHhcCCCeEEEeEeEeeccCCCCCCCCCCCCCC
Q psy8199 628 ILNKNEIQHMTSAIFQTFNELDEVINLFNL----PFNDLLFRAQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQST 703 (965)
Q Consensus 628 ~~t~~~i~~~~~~l~~~~~~~~e~l~l~~~----~~~~l~~~a~~~~~~~~~g~~~~~~~~i~~~s~~C~~~C~fC~~~~ 703 (965)
..++++++++++ ....+.+|++.||+. ++.+|+.+|+++|+++| |+++.++.++++ ||.|+++|.||+|+.
T Consensus 21 ~~~~~~~~~il~---g~~ls~ee~~~Ll~~~~~~~l~~L~~~A~~ir~~~~-G~~v~l~~~in~-Tn~C~~~C~YC~f~~ 95 (371)
T PRK09240 21 SKTAADVERALN---KDRLSLEDLMALLSPAAEPYLEEMAQKAQRLTRQRF-GNTISLYTPLYL-SNYCANDCTYCGFSM 95 (371)
T ss_pred cCCHHHHHHHHh---cCCCCHHHHHHHhCCCChhHHHHHHHHHHHHHHHHc-CCEEEEEeceEE-cccccCcCCcCCCCC
Confidence 456777777664 356888999999974 35678899999988888 899999999999 999999999999987
Q ss_pred cCCCCcccccCCCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHhcCcEeEEecCCCCHHHHHHHHH
Q psy8199 704 HYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKK 783 (965)
Q Consensus 704 ~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~e~l~~Lk~ 783 (965)
.++. .+ +.+++|||+++++.+.+.|+++|+|++|..+ ...++++++++++.+++....++++.+.++.+.++.||+
T Consensus 96 ~~~~--~~-~~ls~eEI~~~a~~~~~~Gv~~i~lvgGe~p-~~~~~e~l~~~i~~Ik~~~p~i~i~~g~lt~e~l~~Lk~ 171 (371)
T PRK09240 96 SNKI--KR-KTLDEEEIEREMAAIKKLGFEHILLLTGEHE-AKVGVDYIRRALPIAREYFSSVSIEVQPLSEEEYAELVE 171 (371)
T ss_pred CCCC--cc-ccCCHHHHHHHHHHHHhCCCCEEEEeeCCCC-CCCCHHHHHHHHHHHHHhCCCceeccCCCCHHHHHHHHH
Confidence 5432 23 5699999999999999999999999997644 457899999999999986666777889999999999999
Q ss_pred hCCCeEeccCCC-CHHHHhcccC---CCCHHHHHHHHHHHHHcCCc-eeeeEEEecCCCHHHHHHHHHHHHhcCC----C
Q psy8199 784 VGLDYYNHNLDT-SPKLYGDIIS---TRDYENRLNTLKNVRNVGIN-ICCGGIIGLSESRDQRAELIFQLANLNP----Y 854 (965)
Q Consensus 784 aG~~~i~i~~es-~~~~~~~i~~---~~~~~~~~~~i~~~~~~Gi~-v~~~~i~Gl~et~ed~~~~l~~l~~l~~----~ 854 (965)
||++++++++|| +++.|+++++ +|++++++++++.++++|+. +++++|+|+||+.+|+++++.++++|+. .
T Consensus 172 aGv~r~~i~lET~~~~~~~~i~~~g~~h~~~~rl~~i~~a~~aG~~~v~~g~i~Glge~~~d~~~~a~~l~~L~~~~~~~ 251 (371)
T PRK09240 172 LGLDGVTVYQETYNPATYAKHHLRGPKRDFEYRLETPERAGRAGIRKIGLGALLGLSDWRTDALMTALHLRYLQRKYWQA 251 (371)
T ss_pred cCCCEEEEEEecCCHHHHHHhCcCCCCCCHHHHHHHHHHHHHcCCCeeceEEEecCCccHHHHHHHHHHHHHHHHhCCCC
Confidence 999999999999 8999999984 78999999999999999996 9999999999999999999999999983 1
Q ss_pred CCceeeccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchh----hHHHHhhcCccEEeeCCccc
Q psy8199 855 PESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGET----TQAFCFLAGANSIFYGDKLL 930 (965)
Q Consensus 855 ~~~i~~~~~~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~----~~~~~l~~Gan~~~~g~~~~ 930 (965)
...|+++.|+|.+| |++..+++++.+++++++++|+++|+..|+++++|+....+ ++...+.+| |++++|++.
T Consensus 252 ~~sv~~~~l~P~~g-~~~~~~~~~~~e~l~~ia~~Rl~lP~~~i~~s~g~~~~lrd~~~~~~~~~~~ag-~~~~~G~y~- 328 (371)
T PRK09240 252 EYSISFPRLRPCTG-GIEPASIVSDKQLVQLICAFRLFLPDVEISLSTRESPEFRDNLIPLGITKMSAG-SSTQPGGYA- 328 (371)
T ss_pred ceeeecCccccCCC-CCCCCCCCCHHHHHHHHHHHHHHCcccccEEecCCCHHHHHHHHhhcceeeccC-ccCCCCCcC-
Confidence 24799999999999 99999999999999999999999999999999999655454 334566775 999999965
Q ss_pred cC----------CCCCChhhHHHHHHcCCCcchhh
Q psy8199 931 TT----------DNTKTNDDSKLLKKLGINTRNIK 955 (965)
Q Consensus 931 t~----------~~~~~~~~~~~~~~~g~~~~~~~ 955 (965)
|+ +|++++++++||+++|+.|...+
T Consensus 329 ~~~~~~~qf~~~~~r~~~~~~~~i~~~g~~~~~~~ 363 (371)
T PRK09240 329 DDHKELEQFEISDDRSVEEVAAALRAKGLQPVWKD 363 (371)
T ss_pred CCCCCcCCccCCCCCCHHHHHHHHHHCCCeeccch
Confidence 54 68899999999999999996544
|
|
| >PRK07360 FO synthase subunit 2; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-41 Score=371.26 Aligned_cols=321 Identities=16% Similarity=0.265 Sum_probs=271.8
Q ss_pred cCHHHHHHHHHhhhc-ccccHHHHHHhcCC-C---chhHHHHHHHHHHHhcCCCeEEE--eEeEeeccCCCCCCCCCCCC
Q psy8199 629 LNKNEIQHMTSAIFQ-TFNELDEVINLFNL-P---FNDLLFRAQKVHRKYFDANEIEL--AVLLSIKTGGCTEDCGYCPQ 701 (965)
Q Consensus 629 ~t~~~i~~~~~~l~~-~~~~~~e~l~l~~~-~---~~~l~~~a~~~~~~~~~g~~~~~--~~~i~~~s~~C~~~C~fC~~ 701 (965)
+++.++..+++++.. ...+.++++.||+. + +.+|+.+|+++|++++ |+++++ +..+++ ||.|+.+|.||+|
T Consensus 2 ~~~~~~~~~~~~~~~g~~ls~~e~~~Ll~~~~~~~l~~L~~~A~~ir~~~~-G~~v~~~~~~~i~~-Tn~C~~~C~fC~~ 79 (371)
T PRK07360 2 MTDQIFEDILERARKGKDLSKEDALELLETTEPRRIFEILELADRLRKEQV-GDTVTYVVNRNINF-TNICEGHCGFCAF 79 (371)
T ss_pred cchHHHHHHHHHHhcCCCCCHHHHHHHhcCCChHHHHHHHHHHHHHHHHhc-CCeEEEEeccCccc-chhhhcCCccCCc
Confidence 455667888888765 57788999999855 3 6778999999988877 888876 457888 9999999999999
Q ss_pred CCcCCCCcccccCCCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHhc--CcEeEE-----------
Q psy8199 702 STHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI--GLETCL----------- 768 (965)
Q Consensus 702 ~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~--~~~i~~----------- 768 (965)
++. .....+|. +++|||++.++++.+.|+++++|++|.++ ...+.++++++++.+|+. ++.++.
T Consensus 80 ~~~-~~~~~~y~-ls~eeI~~~a~~a~~~G~~~i~l~~G~~p-~~~~~e~~~~~i~~ik~~~~~i~i~a~s~~ei~~~~~ 156 (371)
T PRK07360 80 RRD-EGDHGAFW-LTIAEILEKAAEAVKRGATEVCIQGGLHP-AADSLEFYLEILEAIKEEFPDIHLHAFSPMEVYFAAR 156 (371)
T ss_pred ccC-CCCCCCee-CCHHHHHHHHHHHHhCCCCEEEEccCCCC-CCCcHHHHHHHHHHHHHhCCCcceeeCCHHHHHHHHh
Confidence 986 33455666 99999999999999999999999988655 233589999999999974 456654
Q ss_pred ecCCCCHHHHHHHHHhCCCeEe-ccCCC-CHHHHhcccCCC-CHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHH
Q psy8199 769 TLGMLNENQAYRLKKVGLDYYN-HNLDT-SPKLYGDIISTR-DYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELI 845 (965)
Q Consensus 769 ~~~~~~~e~l~~Lk~aG~~~i~-i~~es-~~~~~~~i~~~~-~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l 845 (965)
+.|..+++.+++||+||++++. -+.|. ++++++.+++++ +.++|+++++.++++|+++++++|+|+|||.+|+++++
T Consensus 157 ~~G~~~~e~l~~LkeAGld~~~~t~~e~l~~~vr~~i~p~~~s~~~~l~~i~~a~~~Gl~~~sg~i~G~gEt~edrv~~l 236 (371)
T PRK07360 157 EDGLSYEEVLKALKDAGLDSMPGTAAEILVDEVRRIICPEKIKTAEWIEIVKTAHKLGLPTTSTMMYGHVETPEHRIDHL 236 (371)
T ss_pred hcCCCHHHHHHHHHHcCCCcCCCcchhhccHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCceeeEEeeCCCCHHHHHHHH
Confidence 5689999999999999999996 23455 677888888865 89999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCceeecccccc----CCCCCCCCC----CCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhh
Q psy8199 846 FQLANLNPYPESVPINNLVQI----KGTPLYGSS----ILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFL 917 (965)
Q Consensus 846 ~~l~~l~~~~~~i~~~~~~P~----~gT~l~~~~----~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~ 917 (965)
..+++++ ++...+..|+|. +|||+++.. +.++.+.+|++|++|+++|+..++++++|..++...++.+|.
T Consensus 237 ~~lr~l~--~~~~g~~~fIp~~f~~~~Tpl~~~~~~~~~~~~~~~lr~iAi~Rl~lp~~~~~i~a~~~~lg~~~~~~~l~ 314 (371)
T PRK07360 237 LILREIQ--QETGGITEFVPLPFVHENAPLYERGRVKGGAPGLEDLLLYAVSRIFLGNWIKNIQASWVKLGLKLAQVALN 314 (371)
T ss_pred HHHHHhc--hhhCCeeEEEeccccCCCCccccccccCCCCCHHHHHHHHHHHHHhcCCCCCCeeccceeeCHHHHHHHHh
Confidence 9999999 788888888874 599998653 357888899999999999997789999998888887888999
Q ss_pred cCccEE---eeCCccccCCC------CCChhhHHHHHHcCCCcchhhh
Q psy8199 918 AGANSI---FYGDKLLTTDN------TKTNDDSKLLKKLGINTRNIKI 956 (965)
Q Consensus 918 ~Gan~~---~~g~~~~t~~~------~~~~~~~~~~~~~g~~~~~~~~ 956 (965)
+|||++ +.++++.+..| .+.+++.+|++++|+.|..|+-
T Consensus 315 ~Gan~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~i~~~G~~~~~r~~ 362 (371)
T PRK07360 315 CGANDLGGTLMEEHITKMAGASGGTYMSVEELQWMIKSIGRIPKQRDT 362 (371)
T ss_pred cCCccCcCcCcccceecccCCCCCCCCCHHHHHHHHHHcCCceeeecC
Confidence 999998 89998866444 4788999999999999988875
|
|
| >TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-41 Score=369.03 Aligned_cols=305 Identities=16% Similarity=0.218 Sum_probs=264.1
Q ss_pred cccccHHHHHHhcC-CCchhHHHHHHHHHHHhcCCCeEEEe--EeEeeccCCCCCCCCCCCCCCcCCCCcccccCCCHHH
Q psy8199 643 QTFNELDEVINLFN-LPFNDLLFRAQKVHRKYFDANEIELA--VLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIES 719 (965)
Q Consensus 643 ~~~~~~~e~l~l~~-~~~~~l~~~a~~~~~~~~~g~~~~~~--~~i~~~s~~C~~~C~fC~~~~~~~~~~~~~~~~~~ee 719 (965)
....+.++++.||+ .++.+|+..|+++|++.+ |++++++ .+|++ ||+|+++|.||+|++..+. ...|+ +++||
T Consensus 8 ~~~ls~~e~~~L~~~~~~~~L~~~A~~vr~~~~-g~~v~~~~~~~in~-Tn~C~~~C~FCa~~~~~~~-~~~y~-l~~ee 83 (351)
T TIGR03700 8 GQRLSFEDGLFLYASDDLLTLGELAALVRERKH-GDKVYFNVNRHLNY-TNICVNGCAFCAFQRERGE-PGAYA-MSLEE 83 (351)
T ss_pred CCCCCHHHHHHHcCCCcHHHHHHHHHHHHHHhc-CCeEEEeccCCccc-ccccccCCccCceeCCCCC-cccCC-CCHHH
Confidence 35678889999984 467889999999988877 8888777 78997 9999999999999875443 24566 89999
Q ss_pred HHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHhcC--cEeEE-----------ecCCCCHHHHHHHHHhCC
Q psy8199 720 VITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIG--LETCL-----------TLGMLNENQAYRLKKVGL 786 (965)
Q Consensus 720 i~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~~--~~i~~-----------~~~~~~~e~l~~Lk~aG~ 786 (965)
|++.++++.+.|++++++++|.++ ..+.++++++++.||+.. +.++. +.|..+++.+++||+||+
T Consensus 84 I~~~a~~~~~~G~~~v~l~~G~~p--~~~~~~~~e~i~~Ik~~~p~i~i~~~~~~ei~~~~~~~g~~~~e~l~~LkeAGl 161 (351)
T TIGR03700 84 IVARVKEAYAPGATEVHIVGGLHP--NLPFEWYLDMIRTLKEAYPDLHVKAFTAVEIHHFSKISGLPTEEVLDELKEAGL 161 (351)
T ss_pred HHHHHHHHHHCCCcEEEEecCCCC--CCCHHHHHHHHHHHHHHCCCceEEeCCHHHHHHHHHHcCCCHHHHHHHHHHcCC
Confidence 999999999999999999988665 456899999999999854 55543 357788999999999999
Q ss_pred CeEec-cCCC-CHHHHhcccCCC-CHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccc
Q psy8199 787 DYYNH-NLDT-SPKLYGDIISTR-DYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNL 863 (965)
Q Consensus 787 ~~i~i-~~es-~~~~~~~i~~~~-~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~ 863 (965)
+++.. ++|+ ++++++++++++ ++++|+++++.++++|+++++++|+|+|||++|+++++..+++++ ....+++.|
T Consensus 162 d~~~~~g~E~~~~~v~~~i~~~~~~~~~~l~~i~~a~~~Gi~~~sg~i~GlgEt~edrv~~l~~Lr~l~--~~~~~f~~f 239 (351)
T TIGR03700 162 DSMPGGGAEIFAEEVRQQICPEKISAERWLEIHRTAHELGLKTNATMLYGHIETPAHRVDHMLRLRELQ--DETGGFQAF 239 (351)
T ss_pred CcCCCCcccccCHHHHhhcCCCCCCHHHHHHHHHHHHHcCCCcceEEEeeCCCCHHHHHHHHHHHHHhh--HhhCCceEE
Confidence 99984 8999 999999999865 678999999999999999999999999999999999999999999 788888888
Q ss_pred ccc----CCCCCCCC--CCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccE---EeeCCccccCCC
Q psy8199 864 VQI----KGTPLYGS--SILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANS---IFYGDKLLTTDN 934 (965)
Q Consensus 864 ~P~----~gT~l~~~--~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~---~~~g~~~~t~~~ 934 (965)
+|. +||||++. +++++.+.++++|++|+++|+ ..+|+++|..++.+.++.+|.+|||+ ++.++++....|
T Consensus 240 iP~~f~~~~tpl~~~~~~~~~~~e~lr~iA~~Rl~l~~-i~~i~a~w~~~~~~~~~~~L~~Gand~ggt~~~e~v~~~~g 318 (351)
T TIGR03700 240 IPLAFQPDNNRLNRLLAKGPTGLDDLKTLAVSRLYLDN-IPHIKAYWVMLGLKLAQVALAFGVNDLDGTVVEEKIGHDAG 318 (351)
T ss_pred EeecccCCCCcccCCCCCCCCHHHHHHHHHHHHHhcCC-CCcccccccccCHHHHHHHHhcCCCCCCccCccceeecccc
Confidence 888 59999876 788999999999999999998 48999999999999999999999996 445555553333
Q ss_pred ------CCChhhHHHHHHcCCCcchhhh
Q psy8199 935 ------TKTNDDSKLLKKLGINTRNIKI 956 (965)
Q Consensus 935 ------~~~~~~~~~~~~~g~~~~~~~~ 956 (965)
.+.++...+++++|++|++|+.
T Consensus 319 ~~~~~~~~~~~l~~~i~~~g~~p~~r~~ 346 (351)
T TIGR03700 319 AKSPQALSKDELVRLIRDAGRVPVERDT 346 (351)
T ss_pred CCCCCCCCHHHHHHHHHHcCCCeeeecC
Confidence 3578999999999999999874
|
Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein. |
| >PRK08445 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=363.36 Aligned_cols=301 Identities=17% Similarity=0.242 Sum_probs=254.1
Q ss_pred ccHHHHHHhc-CCCchhHHHHHHHHHHHhcCCCeEEE---eEeEeeccCCCCCCCCCCCCCCcCCCCcccccCCCHHHHH
Q psy8199 646 NELDEVINLF-NLPFNDLLFRAQKVHRKYFDANEIEL---AVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVI 721 (965)
Q Consensus 646 ~~~~e~l~l~-~~~~~~l~~~a~~~~~~~~~g~~~~~---~~~i~~~s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~ 721 (965)
.+.+|++.|| +.++.+|+..|+++|++++ |+.+.. +.++++ ||+|+++|.||+|++.++.. ..| .+++|+|+
T Consensus 4 ls~~e~l~Ll~~~~l~~L~~~A~~vr~~~~-g~~v~~~~~~~~in~-Tn~C~~~C~FCa~~~~~~~~-~~y-~l~~eeI~ 79 (348)
T PRK08445 4 LSKEEALDLIKNAPLKELGEMALERKQELH-PEKITTFIVDRNINY-TNICWVDCKFCAFYRHLKED-DAY-ILSFEEID 79 (348)
T ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHHHc-CCcEEEEeccccccc-ccccccCCccCCCccCCCCC-CCe-eCCHHHHH
Confidence 4667888888 4567899999999988888 565554 566999 99999999999999864443 556 48999999
Q ss_pred HHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHhcCc--EeEE----------ec-CCCCHHHHHHHHHhCCCe
Q psy8199 722 TAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGL--ETCL----------TL-GMLNENQAYRLKKVGLDY 788 (965)
Q Consensus 722 ~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~~~--~i~~----------~~-~~~~~e~l~~Lk~aG~~~ 788 (965)
+.++++.+.|++++++++|..+ ..+.+++.++++.|++..+ .++. +. +...+|.+++||+||+++
T Consensus 80 ~~~~~a~~~g~~~i~~~gg~~~--~~~~e~~~~l~~~Ik~~~p~i~~~a~s~~ei~~~a~~~~~~~~e~L~~LkeAGl~~ 157 (348)
T PRK08445 80 KKIEELLAIGGTQILFQGGVHP--KLKIEWYENLVSHIAQKYPTITIHGFSAVEIDYIAKISKISIKEVLERLQAKGLSS 157 (348)
T ss_pred HHHHHHHHcCCCEEEEecCCCC--CCCHHHHHHHHHHHHHHCCCcEEEEccHHHHHHHHHHhCCCHHHHHHHHHHcCCCC
Confidence 9999999999999999887655 5679999999999998654 4322 21 233489999999999999
Q ss_pred Ee-ccCCC-CHHHHhcccC-CCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCc-----eee
Q psy8199 789 YN-HNLDT-SPKLYGDIIS-TRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPES-----VPI 860 (965)
Q Consensus 789 i~-i~~es-~~~~~~~i~~-~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~-----i~~ 860 (965)
+. .++|+ ++++.+.+++ ..+.++|+++++.+|++||++++++|+|++||.+|+++++..+++++ .++ +++
T Consensus 158 ~~g~glE~~~d~v~~~~~pk~~t~~~~i~~i~~a~~~Gi~~~sg~i~G~~Et~edr~~~l~~lreLq--~~~~g~~~fi~ 235 (348)
T PRK08445 158 IPGAGAEILSDRVRDIIAPKKLDSDRWLEVHRQAHLIGMKSTATMMFGTVENDEEIIEHWERIRDLQ--DETGGFRAFIL 235 (348)
T ss_pred CCCCceeeCCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCeeeeEEEecCCCCHHHHHHHHHHHHHHH--HHhCCeeEEec
Confidence 97 68999 9999999976 66899999999999999999999999999999999999999999999 554 444
Q ss_pred ccccccCCCCCCCC----CCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccE---EeeCCccccCC
Q psy8199 861 NNLVQIKGTPLYGS----SILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANS---IFYGDKLLTTD 933 (965)
Q Consensus 861 ~~~~P~~gT~l~~~----~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~---~~~g~~~~t~~ 933 (965)
+.|.| +|||++.. ++.++.+++|++|++|+++|+ .++|+++|..++..+++.+|.+|||+ ++.++++....
T Consensus 236 ~~~~p-~~tpl~~~~~~~~~~~~~e~Lr~iAv~Rl~l~~-~~~i~a~~~~~g~~~~~~~L~~Gand~~gt~~~e~i~~~a 313 (348)
T PRK08445 236 WSFQP-DNTPLKEEIPEIKKQSSNRYLRLLAVSRLFLDN-FKNIQSSWVTQGSYIGQLALLFGANDLGSTMMEENVVKAA 313 (348)
T ss_pred cccCC-CCCcccccCCCCCCCCHHHHHHHHHHHHHhCCC-CCCccCCCcccCHHHHHHHHhcCCccCccccccccchhcc
Confidence 44455 99999853 458999999999999999999 59999999988988899999999994 56677776554
Q ss_pred CC----CChhhHHHHHHcCCCcchhhh
Q psy8199 934 NT----KTNDDSKLLKKLGINTRNIKI 956 (965)
Q Consensus 934 ~~----~~~~~~~~~~~~g~~~~~~~~ 956 (965)
|. ++++...+|+++|+.|++|+.
T Consensus 314 g~~~~~~~~~~~~~i~~~g~~p~~r~t 340 (348)
T PRK08445 314 GASFRMNQAEMIELIKDIGEIPAKRNT 340 (348)
T ss_pred CCCCCCCHHHHHHHHHHcCCCeeeecC
Confidence 43 568999999999999999985
|
|
| >TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-40 Score=363.77 Aligned_cols=302 Identities=19% Similarity=0.294 Sum_probs=256.6
Q ss_pred cHHHHHHhcC--CCchhHHHHHHHHHHHhcCCCeEEE--eEeEeeccCCCCCCCCCCCCCCcCCCCcccccCCCHHHHHH
Q psy8199 647 ELDEVINLFN--LPFNDLLFRAQKVHRKYFDANEIEL--AVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVIT 722 (965)
Q Consensus 647 ~~~e~l~l~~--~~~~~l~~~a~~~~~~~~~g~~~~~--~~~i~~~s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~ 722 (965)
+.+|++.||+ .++.+|+.+|+++|++++ |+++++ +..+++ |++|+++|.||++++... ....|+ +|+|+|++
T Consensus 2 s~~e~~~ll~~~~~~~~L~~~A~~ir~~~~-g~~v~~~~~~~i~~-T~~C~~~C~FC~~~~~~~-~~~~y~-ls~eeI~e 77 (343)
T TIGR03551 2 TKEEALELFEARGNLFELFRLADELRRDIV-GDTVTYVVNRNINF-TNVCYGGCGFCAFRKRKG-DADAYL-LSLEEIAE 77 (343)
T ss_pred CHHHHHHHHhCCChHHHHHHHHHHHHHHhc-CCeEEEEeeecccc-ccccccCCccCCCccCCC-CCCccc-CCHHHHHH
Confidence 4578888885 467889999999987777 888876 456777 999999999999987532 234455 89999999
Q ss_pred HHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHhc--CcEeEE-----------ecCCCCHHHHHHHHHhCCCeE
Q psy8199 723 AAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI--GLETCL-----------TLGMLNENQAYRLKKVGLDYY 789 (965)
Q Consensus 723 ~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~--~~~i~~-----------~~~~~~~e~l~~Lk~aG~~~i 789 (965)
+++++.+.|+++|+|++|.++ ..+.++++++++.|++. ++.+++ +.|.++++.+++||+||++++
T Consensus 78 ~~~~~~~~G~~~i~l~gG~~p--~~~~~~~~~i~~~Ik~~~~~i~~~~~t~~ei~~~~~~~g~~~~e~l~~LkeAGl~~i 155 (343)
T TIGR03551 78 RAAEAWKAGATEVCIQGGIHP--DLDGDFYLDILRAVKEEVPGMHIHAFSPMEVYYGARNSGLSVEEALKRLKEAGLDSM 155 (343)
T ss_pred HHHHHHHCCCCEEEEEeCCCC--CCCHHHHHHHHHHHHHHCCCceEEecCHHHHHHHHHHcCCCHHHHHHHHHHhCcccc
Confidence 999999999999999988655 45689999999999985 455544 568899999999999999999
Q ss_pred e-ccCCC-CHHHHhcccCCC-CHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeecccccc
Q psy8199 790 N-HNLDT-SPKLYGDIISTR-DYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQI 866 (965)
Q Consensus 790 ~-i~~es-~~~~~~~i~~~~-~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~ 866 (965)
. .+.|+ ++++++++++++ ++++|+++++.++++|+++++++|+|+|||.+|+++++.++++++ ++...+..|+|.
T Consensus 156 ~~~~~E~~~~~v~~~i~~~~~~~~~~~~~i~~a~~~Gi~v~s~~i~G~~Et~ed~~~~l~~lr~l~--~~~~~~~~~iP~ 233 (343)
T TIGR03551 156 PGTAAEILDDEVRKVICPDKLSTAEWIEIIKTAHKLGIPTTATIMYGHVETPEHWVDHLLILREIQ--EETGGFTEFVPL 233 (343)
T ss_pred cCcchhhcCHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcccceEEEecCCCHHHHHHHHHHHHHhh--HHhCCeeEEEec
Confidence 8 46788 899999999865 999999999999999999999999999999999999999999999 777777777775
Q ss_pred C----CCCCCCC----CCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccE---EeeCCccccCC--
Q psy8199 867 K----GTPLYGS----SILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANS---IFYGDKLLTTD-- 933 (965)
Q Consensus 867 ~----gT~l~~~----~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~---~~~g~~~~t~~-- 933 (965)
| |||++.. ++.++++++|++|++|+++|+..++++++|..++...++.+|.+|||+ +++.+++....
T Consensus 234 ~f~~~gT~l~~~~~~~~~~~~~~~lr~iAv~Rl~lp~~~~~i~a~~~~l~~~~~~~~l~~Gan~~~g~~~~e~v~~~~g~ 313 (343)
T TIGR03551 234 PFVHYNAPLYLKGMARPGPTGREDLKVHAIARILLHGLIDNIQASWVKLGKKLAQVALRCGANDLGGTLMEESISRAAGA 313 (343)
T ss_pred cccCCCCccccccCCCCCCCHHHHHHHHHHHHHhCCCcccCeeccccccCHHHHHHHHhCCCccCCccceecccccccCC
Confidence 5 9999743 557999999999999999999888999999888888789999999995 44555555333
Q ss_pred ----CCCChhhHHHHHHcCCCcchhhh
Q psy8199 934 ----NTKTNDDSKLLKKLGINTRNIKI 956 (965)
Q Consensus 934 ----~~~~~~~~~~~~~~g~~~~~~~~ 956 (965)
..++++...+++++|++|++|+.
T Consensus 314 ~~~~~~~~~~~~~~i~~~g~~~~~r~~ 340 (343)
T TIGR03551 314 SHGEYLSPEELEAIIEDAGRIPKQRTT 340 (343)
T ss_pred CCCCCCCHHHHHHHHHHcCCCeeecCC
Confidence 23678999999999999999874
|
This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases. |
| >PRK11180 rluD 23S rRNA pseudouridine synthase D; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-41 Score=364.10 Aligned_cols=227 Identities=41% Similarity=0.672 Sum_probs=181.3
Q ss_pred cccCCEEEEEcCCCCCCCCcccccCCCccEEEecCcEEEEECCCCCeeeeCCCCCcccHHHHHHHHCCcccCCCCccccc
Q psy8199 2 IISGYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVH 81 (965)
Q Consensus 2 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~e~~~~lv~nKP~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~ 81 (965)
|..||.|.+..+.... .........++|||||++|+|+|||+|++||++.+....++.+.+...++.....+++.+||
T Consensus 59 v~~gD~I~v~~~~~~~--~~~~~~~~~~~iiyed~~~lvvnKP~gl~~~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~vh 136 (325)
T PRK11180 59 VLGGEQVAIDAEIEEE--ARFEPQDIPLDIVYEDDDILVINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVH 136 (325)
T ss_pred cCCCCEEEEeeccccc--cCCCCCCCCCcEEEECCCEEEEECCCCCeEeCCCCCCCCcHHHHHHHHhhhccCCcccceec
Confidence 5667877765322110 01112334679999999999999999999999877656788888877665433345688999
Q ss_pred cCCCCCceEEEeEeCHHHHHHHHHHHHcCCcCeEEEEEEcCccCCCceEeeccccCCCCCeeEEEccCCCCcceEEEEEE
Q psy8199 82 RLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYER 161 (965)
Q Consensus 82 RLD~~tsGlll~a~~~~~~~~l~~~~~~~~~~K~Y~a~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~ 161 (965)
|||++||||||||||.++++.|+++|+.+.+.|+|+|+|.|.+++++.++.++.........+.+. .+++++.|.|++
T Consensus 137 RLD~~TSGlll~Ak~~~~~~~l~~~~~~~~v~K~Y~A~v~G~~~~~~~i~~~l~~~~~~~~~~~~~--~~gk~a~T~~~~ 214 (325)
T PRK11180 137 RLDKDTTGLMVVAKTVPAQTRLVEALQKREITREYEAVAIGHMTAGGTVDEPISRHPTKRTHMAVH--PMGKPAVTHYRI 214 (325)
T ss_pred cCCCCCceeEEEECCHHHHHHHHHHHHhCCcceEEEEEEecCCCCCCEEECceecCCCcCcEEEeC--CCCcEEeEEEEE
Confidence 999999999999999999999999999999999999999999988888888886654433333333 368999999999
Q ss_pred eEEeeccCCcEEEEEEEeCCCcccHHHHHHHHhCCceecCCCCCccccc------c-----ccccccccccccccccccc
Q psy8199 162 LATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGKKYSK------S-----LIFNRQALHAYKLGLIHPK 230 (965)
Q Consensus 162 ~~~~~~~~~~~s~~~~~~~tGr~hQIR~~~~~~g~pi~gD~~~~~~~~~------~-----~~~~~~~Lha~~l~f~~p~ 230 (965)
+... .++|+++|+|.|||+||||+||+++||||+||++||..... . ..+.+++||++++.|.||.
T Consensus 215 l~~~----~~~slv~~~~~TGRtHQIRvhla~lG~PI~GD~~Yg~~~~~~~~~~~~~~~~~~~~~r~~Lha~~l~f~hP~ 290 (325)
T PRK11180 215 MEHF----RVHTRLRLRLETGRTHQIRVHMAHITHPLVGDQVYGGRPRPPKGASEEFISTLRKFDRQALHATMLRLYHPI 290 (325)
T ss_pred eEEc----CCeEEEEEEeCCCCHHHHHHHHHhCCCCEeCccccCCCcccccccchhhhhhccccchhhhhcceeEeeCCC
Confidence 9875 67899999999999999999999999999999999964210 0 0246789999999999998
Q ss_pred Cccccc
Q psy8199 231 NNLKLK 236 (965)
Q Consensus 231 ~~~~~~ 236 (965)
++....
T Consensus 291 ~~~~~~ 296 (325)
T PRK11180 291 TGIEME 296 (325)
T ss_pred CCCeEE
Confidence 876543
|
|
| >PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-40 Score=364.55 Aligned_cols=326 Identities=18% Similarity=0.307 Sum_probs=278.9
Q ss_pred cCHHHHHHHHHhhhc-ccccHHHHHHhcCCC----chhHHHHHHHHHHHhcCCCeEEEeEeEeeccCCCCCCCCCCCCCC
Q psy8199 629 LNKNEIQHMTSAIFQ-TFNELDEVINLFNLP----FNDLLFRAQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQST 703 (965)
Q Consensus 629 ~t~~~i~~~~~~l~~-~~~~~~e~l~l~~~~----~~~l~~~a~~~~~~~~~g~~~~~~~~i~~~s~~C~~~C~fC~~~~ 703 (965)
.+.+++.++++++.. ...+.++++.||+.+ +.+|+..|+++|++.| |+++.+++++++ ||.|+++|.||+|++
T Consensus 28 ~~~~~v~~il~Kal~~~~Ls~eEal~LL~~~~~~~le~L~~~A~~ir~~~~-Gn~I~lfapLyi-SN~C~n~C~YCgfs~ 105 (469)
T PRK09613 28 PDKDEIREILEKAKEKKGLSPEEAAVLLNVEDPELLEEIFEAAREIKEKIY-GNRIVLFAPLYI-SNYCVNNCVYCGFRR 105 (469)
T ss_pred CCHHHHHHHHHHHHcCCCCCHHHHHHHHcCCChhHHHHHHHHHHHHHHHHc-CCEEEEEEeccc-cCCCCCCCccCCCcc
Confidence 344557777777654 567889999998653 4677889999988877 899999999998 999999999999998
Q ss_pred cCCCCcccccCCCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHhc----C--cEeEEecCCCCHHH
Q psy8199 704 HYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI----G--LETCLTLGMLNENQ 777 (965)
Q Consensus 704 ~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~----~--~~i~~~~~~~~~e~ 777 (965)
.. ....++. +++|||+++++.+.+.|+++++|++|.++ ...++++++++++.|++. + ..++++.+.++.+.
T Consensus 106 ~n-~~i~r~~-Ls~EEI~~ea~~~~~~G~~~i~LvsGe~p-~~~~~eyi~e~i~~I~~~~~~~g~i~~v~inig~lt~ee 182 (469)
T PRK09613 106 SN-KEIKRKK-LTQEEIREEVKALEDMGHKRLALVAGEDP-PNCDIEYILESIKTIYSTKHGNGEIRRVNVNIAPTTVEN 182 (469)
T ss_pred CC-CCCCceE-CCHHHHHHHHHHHHHCCCCEEEEEeCCCC-CCCCHHHHHHHHHHHHHhccccCcceeeEEEeecCCHHH
Confidence 53 3445554 89999999999999999999999988765 467899999999999973 2 36889999999999
Q ss_pred HHHHHHhCCCeEeccCCC-CHHHHhcccC---CCCHHHHHHHHHHHHHcCCc-eeeeEEEecCCCHHHHHHHHHHHHhcC
Q psy8199 778 AYRLKKVGLDYYNHNLDT-SPKLYGDIIS---TRDYENRLNTLKNVRNVGIN-ICCGGIIGLSESRDQRAELIFQLANLN 852 (965)
Q Consensus 778 l~~Lk~aG~~~i~i~~es-~~~~~~~i~~---~~~~~~~~~~i~~~~~~Gi~-v~~~~i~Gl~et~ed~~~~l~~l~~l~ 852 (965)
+++||++|++++.+.+|| ++++|+++++ +++|+++++++++++++|++ |++++|+|||++.+|.++++.++++|+
T Consensus 183 y~~LkeaGv~~~~l~qETY~~ety~~~hp~g~k~~y~~Rl~t~~rA~~aGi~~Vg~G~L~GLge~~~E~~~l~~hl~~L~ 262 (469)
T PRK09613 183 YKKLKEAGIGTYQLFQETYHKPTYEKMHPSGPKSDYDWRLTAMDRAMEAGIDDVGIGVLFGLYDYKFEVLGLLMHAEHLE 262 (469)
T ss_pred HHHHHHcCCCEEEeccccCCHHHHHhcCCCCCCCCHHHHHHHHHHHHHcCCCeeCeEEEEcCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999 9999999986 57999999999999999997 999999999999999999999999983
Q ss_pred C----CCCceeeccccccCCCCCCCCC-CCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeCC
Q psy8199 853 P----YPESVPINNLVQIKGTPLYGSS-ILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGD 927 (965)
Q Consensus 853 ~----~~~~i~~~~~~P~~gT~l~~~~-~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~ 927 (965)
. .++.|+++.|.|.+|||+++.+ ++++++++|++|++|+++|...|.+++ |+. .+++..++..|++.++.|+
T Consensus 263 ~~~gvgp~tIsvprl~P~~Gtpl~~~~~~vsd~e~lriiA~~RL~~P~~~I~lSt-RE~--~~~r~~~~~~gvt~~sags 339 (469)
T PRK09613 263 ERFGVGPHTISVPRLRPADGSDLENFPYLVSDEDFKKIVAILRLAVPYTGMILST-RES--AELRREVLELGVSQISAGS 339 (469)
T ss_pred HhhCCCCccccccceecCCCCCcccCCCCCCHHHHHHHHHHHHHHCCCCCceeec-CCC--HHHHHHHHhhcceeecccc
Confidence 2 2788999999999999997664 589999999999999999999999987 433 5678888999999999999
Q ss_pred ccccCCC-CCChhhHHHHHHcCCCcchhhhHHhhhhcc
Q psy8199 928 KLLTTDN-TKTNDDSKLLKKLGINTRNIKIKMKNNIKQ 964 (965)
Q Consensus 928 ~~~t~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 964 (965)
+ |..| +..++......||...+.|+++||+.+|++
T Consensus 340 ~--t~~ggy~~~~~~~~~~QF~~~d~r~~~ev~~~l~~ 375 (469)
T PRK09613 340 R--TGVGGYSEEEEEEEKAQFELGDHRSLDEVIRELCE 375 (469)
T ss_pred c--CCCCCcCCCCCCCCCCCccCCCCCCHHHHHHHHHH
Confidence 7 5554 322211223689999999999999999875
|
|
| >cd02563 PseudoU_synth_TruC tRNA pseudouridine isomerase C: Pseudouridine synthases catalyze the isomerization of specific uridines in an tRNA molecule to pseudouridines (5-ribosyluracil, psi) | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-41 Score=344.18 Aligned_cols=208 Identities=28% Similarity=0.387 Sum_probs=166.1
Q ss_pred ccEEEecCcEEEEECCCCCeeeeCCCCCc--ccHHHHHHHHCCcccCCCCccccccCCCCCceEEEeEeCHHHHHHHHHH
Q psy8199 29 LDIIYEDNEIIILNKSAGLVVHPAIGNLS--GTLFDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQ 106 (965)
Q Consensus 29 ~~i~~e~~~~lv~nKP~G~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~v~RLD~~tsGlll~a~~~~~~~~l~~~ 106 (965)
++|||||++|+|+|||+|++|++..+... ..+...+...+. .++++|||||++||||||||||+++++.|+++
T Consensus 1 ~~Ilyed~~~lvvnKP~G~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~vhRLD~~TSGlll~Ak~~~~~~~l~~~ 75 (223)
T cd02563 1 LEILYQDEHLVAINKPSGLLVHRSELDRHETRFALQTLRDQLG-----QHVYPVHRLDRPTSGVLLFALSSEVARKLGEQ 75 (223)
T ss_pred CcEEEecCCEEEEECCCCCeEcCCCCCCCCcHHHHHHHHHHcC-----CCcccccCCCCCCeEEEEEEECHHHHHHHHHH
Confidence 36999999999999999999998764322 233344433332 35789999999999999999999999999999
Q ss_pred HHcCCcCeEEEEEEcCccCCCceEeeccccCCCCCeeEEEccCCCCcceEEEEEEeEEee-------ccCCcEEEEEEEe
Q psy8199 107 LKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGI-------INKKHISLIRCNL 179 (965)
Q Consensus 107 ~~~~~~~K~Y~a~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~-------~~~~~~s~~~~~~ 179 (965)
|++++++|+|+|+|.|.++.++.++.++..+........+....+++.+.|.|+++.... ....++|+++|+|
T Consensus 76 f~~~~v~K~Y~alv~G~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~a~t~~~~l~~~~~~~~~~~~~~~~~slv~~~~ 155 (223)
T cd02563 76 FTEHRVHKTYLAVVRGYVPESGTIDYPLSEELDKLADKFASDDKAPQAATTHYRLLAVEELPVVVGKYPTSRYSLVELTP 155 (223)
T ss_pred HhcCceeEEEEEEEECccCCCCeEEEeeeeCCCccceEEeecCCCCceeEEEEEEeeecccccccccCCCCCeEEEEEEe
Confidence 999999999999999998778888888877655444334433346889999999997531 1123589999999
Q ss_pred CCCcccHHHHHHHHhCCceecCCCCCccccc-----ccccccccccccccccccccCcccccccccCCC
Q psy8199 180 KTGRTHQIRVHMQWLGHGIVGDNLYGKKYSK-----SLIFNRQALHAYKLGLIHPKNNLKLKWRINLPD 243 (965)
Q Consensus 180 ~tGr~hQIR~~~~~~g~pi~gD~~~~~~~~~-----~~~~~~~~Lha~~l~f~~p~~~~~~~~~~~~p~ 243 (965)
.|||+||||+||+++||||+||.+||..... .....+++||++++.|+||.++....+ ..|+
T Consensus 156 ~TGR~HQIRvhla~lG~PIvGD~~Yg~~~~~~~~~~~~~~~rl~Lha~~L~F~hP~t~~~~~~--~a~~ 222 (223)
T cd02563 156 HTGRKHQLRRHLAHIRHPIIGDTTHGDGRHNRFFREHFGCHRLLLAATRLEFTHPVTGERLLI--EAPL 222 (223)
T ss_pred CCCCHHHHHHHHHHcCCCeeCCcccCCcccChhHHhhcCCccceeecCeeEeeCCCCCCeEEE--EccC
Confidence 9999999999999999999999999965321 123467899999999999998887654 3554
|
No cofactors are required. TruC makes psi65 in tRNAs. This psi residue is not universally conserved. |
| >cd02558 PSRA_1 PSRA_1: Pseudouridine synthase, a subgroup of the RluA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=346.82 Aligned_cols=224 Identities=23% Similarity=0.224 Sum_probs=173.4
Q ss_pred cccCCEEEEEcCCCCCCCCcccccCCCccEEEecCcEEEEECCCCCeeeeCCCCCcccHHHHHHHHCCcccCCCCccccc
Q psy8199 2 IISGYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVH 81 (965)
Q Consensus 2 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~e~~~~lv~nKP~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~ 81 (965)
|+.||.|.+..+... .......++|||||++|+|+|||+|++||++.+....++.+.+...+. .+.+.+||
T Consensus 17 l~~gd~i~~~~~~~~-----~~~~~~~~~Iiyed~~~lvvnKPaGl~~~~~~~~~~~t~~~~l~~~~~----~~~~~~vh 87 (246)
T cd02558 17 YRPGTFVWYYRELPD-----EPPIPFEETILHQDEHLLVADKPHFLPVTPRGRYVTETLLVRLRRQTG----NPDLTPAH 87 (246)
T ss_pred ecCCCEEEEeCCCCC-----CCCCCCCcceEEecCCEEEEECCCCCccCCCCcchhhhHHHHHHHHhC----CCcccccc
Confidence 678999977432111 112234588999999999999999999999877766788887765543 24678999
Q ss_pred cCCCCCceEEEeEeCHHHHHHHHHHHHcCCcCeEEEEEEcCccCCC-c-eEeeccccCCCCCeeEEEccCCCCcceEEEE
Q psy8199 82 RLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLN-G-MINAAIMRNPHNRIKMTVSKNFNAKPALTYY 159 (965)
Q Consensus 82 RLD~~tsGlll~a~~~~~~~~l~~~~~~~~~~K~Y~a~v~g~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~ 159 (965)
|||++||||||||||+++++.++.+|+++.++|+|+|+|.|.++.+ + .+..++..+... ...... .+++.+.|+|
T Consensus 88 RLD~~TSGlll~Ak~~~~~~~l~~~~~~~~v~K~YlA~v~G~~~~~~~~~~~~~i~~~~~~--~~~~~~-~~~~~a~T~~ 164 (246)
T cd02558 88 RLDRLTAGLVLFSKRPETRGAYQTLFARREVSKTYEAVAPYVPALTFPLTVRSRIVKGRGF--FQAREV-EGEPNAETRI 164 (246)
T ss_pred cCCCCceeEEEEEcCHHHHHHHHHHHHcCCccEEEEEEEecCCCCCCCcceeccccccCCc--ceeecc-CCCCCceEEE
Confidence 9999999999999999999999999999999999999999988643 2 345455443221 111111 3567899999
Q ss_pred EEeEEeeccCCcEEEEEEEeCCCcccHHHHHHHHhCCceecCCCCCcccccc-ccc-ccccccccccccccccCcccccc
Q psy8199 160 ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGKKYSKS-LIF-NRQALHAYKLGLIHPKNNLKLKW 237 (965)
Q Consensus 160 ~~~~~~~~~~~~~s~~~~~~~tGr~hQIR~~~~~~g~pi~gD~~~~~~~~~~-~~~-~~~~Lha~~l~f~~p~~~~~~~~ 237 (965)
+++... .++|+++|+|.|||+||||+||+++||||+||++||...... ..+ .+++||++++.|.||++.....+
T Consensus 165 ~~l~~~----~~~slv~~~l~TGRtHQIRvhla~lG~PIvGD~~Yg~~~~~~~~~~~~~~~Lha~~l~f~hP~t~~~~~~ 240 (246)
T cd02558 165 ELLARR----GGWGLYRLSPHTGKTHQLRVHMAALGVPILNDPFYPVLLDKDPDDFSRPLQLLAKELEFTDPLTGRPRRF 240 (246)
T ss_pred EEEEec----CCeEEEEEEeCCCCHHHHHHHHHHCCCcccCCccCCCCCcccccccccCchhhhcccCccCCCCCCEEEE
Confidence 999864 678999999999999999999999999999999999642111 111 34789999999999999887764
Q ss_pred cccCCC
Q psy8199 238 RINLPD 243 (965)
Q Consensus 238 ~~~~p~ 243 (965)
..|+
T Consensus 241 --~~~~ 244 (246)
T cd02558 241 --ESGR 244 (246)
T ss_pred --ecCC
Confidence 3444
|
This group is comprised of bacterial proteins assigned to the RluA family of pseudouridine synthases. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. The RluA family is comprised of proteins related to Escherichia coli RluA. |
| >PRK05927 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-40 Score=358.63 Aligned_cols=304 Identities=17% Similarity=0.194 Sum_probs=255.9
Q ss_pred cccHHHHHHhc-CCCchhHHHHHHHHHHHhcCCCeEE--EeEeEeeccCCCCCCCCCCCCCCcCCCCcccccCCCHHHHH
Q psy8199 645 FNELDEVINLF-NLPFNDLLFRAQKVHRKYFDANEIE--LAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVI 721 (965)
Q Consensus 645 ~~~~~e~l~l~-~~~~~~l~~~a~~~~~~~~~g~~~~--~~~~i~~~s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~ 721 (965)
..+.+|++.|+ ..++.+|...|+++|+++++|+.++ ++..+++ ||.|+.+|.||+|++..+. ...| .+++|||+
T Consensus 6 ~is~ee~l~L~~~~~l~~L~~~A~~iR~~~~~G~~V~~i~n~~i~~-Tn~C~~~C~fCaf~~~~~~-~~~y-~ls~eei~ 82 (350)
T PRK05927 6 RISFQEGLELFLYSPLEELQEHADSLRKQRYPQNTVTYVLDANPNY-TNICKIDCTFCAFYRKPHS-SDAY-LLSFDEFR 82 (350)
T ss_pred CCCHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCeEEEEcccCCcc-chhhhcCCccCCccCCCCC-cccc-ccCHHHHH
Confidence 45678888888 4467899999999988887568877 5567788 9999999999999875333 3445 59999999
Q ss_pred HHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHhc--CcEe-----------EEecCCCCHHHHHHHHHhCCCe
Q psy8199 722 TAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI--GLET-----------CLTLGMLNENQAYRLKKVGLDY 788 (965)
Q Consensus 722 ~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~--~~~i-----------~~~~~~~~~e~l~~Lk~aG~~~ 788 (965)
+.++++.+.|+++++|++|.++ ..++++++++++.||+. ++.+ +.+.|.++++.+++||+||+++
T Consensus 83 ~~a~~~~~~G~~~i~i~gG~~p--~~~~e~~~~~i~~ik~~~p~l~~~~~s~~ei~~~~~~~G~~~~e~l~~Lk~aGl~~ 160 (350)
T PRK05927 83 SLMQRYVSAGVKTVLLQGGVHP--QLGIDYLEELVRITVKEFPSLHPHFFSAVEIAHAAQVSGISTEQALERLWDAGQRT 160 (350)
T ss_pred HHHHHHHHCCCCEEEEeCCCCC--CCCHHHHHHHHHHHHHHCCCCcccCCCHHHHHHHHHhcCCCHHHHHHHHHHcCccc
Confidence 9999999999999999988765 47899999999999974 3432 4568999999999999999999
Q ss_pred Eec-cCCC-CHHHHhcccCCC-CHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccccc
Q psy8199 789 YNH-NLDT-SPKLYGDIISTR-DYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQ 865 (965)
Q Consensus 789 i~i-~~es-~~~~~~~i~~~~-~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P 865 (965)
+.. ++|+ ++...+.+++.+ ++++|+++++.||++|+++++++|||+|||++|+++++..|++++ .+.-.+..|+|
T Consensus 161 l~g~~~Et~~~~~~~~~~p~k~~~~~rl~~i~~A~~lGi~~~sg~l~G~gEt~e~ri~~l~~Lr~lq--d~~~gf~~fIp 238 (350)
T PRK05927 161 IPGGGAEILSERVRKIISPKKMGPDGWIQFHKLAHRLGFRSTATMMFGHVESPEDILLHLQTLRDAQ--DENPGFYSFIP 238 (350)
T ss_pred CCCCCchhCCHHHhhccCCCCCCHHHHHHHHHHHHHcCCCcCceeEEeeCCCHHHHHHHHHHHHHhh--HhhCCeeeeee
Confidence 998 8999 677777777755 579999999999999999999999999999999999999999999 44445666666
Q ss_pred c----CCCCCCCC--CCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEe---eCCccccCCCC-
Q psy8199 866 I----KGTPLYGS--SILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIF---YGDKLLTTDNT- 935 (965)
Q Consensus 866 ~----~gT~l~~~--~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~---~g~~~~t~~~~- 935 (965)
. +||||+.. ++.++++++|++|++|+++|++ .+++++|..+|.+.++.+|.+|||+++ ..+++....|.
T Consensus 239 ~~~~~~~tpl~~~~~~~~s~~e~Lr~iAv~Rl~lp~~-~~i~~~w~~~G~~~~q~~L~~GanDlggt~~~e~v~~~ag~~ 317 (350)
T PRK05927 239 WSYKPGNTALGRRVPHQASPELYYRILAVARIFLDNF-DHIAASWFGEGKEEGAKGLHYGADDFGGTILDESVHKCTGWD 317 (350)
T ss_pred cCcCCCCCccccCCCCCCCHHHHHHHHHHHHHhCCCC-CcccCCccccCHHHHHHHHhCCCccccCCCccceeeccCCCC
Confidence 5 68999754 2689999999999999999987 489999999999999999999999754 44555444443
Q ss_pred ---CChhhHHHHHHcCCCcchhhh
Q psy8199 936 ---KTNDDSKLLKKLGINTRNIKI 956 (965)
Q Consensus 936 ---~~~~~~~~~~~~g~~~~~~~~ 956 (965)
+.++..++++++|++|.+|+.
T Consensus 318 ~~~~~~~l~~~i~~~G~~~~~R~~ 341 (350)
T PRK05927 318 LQSSEEEICAMILSEGFIPVERNT 341 (350)
T ss_pred CcCCHHHHHHHHHHcCCCeeeecC
Confidence 368889999999999999875
|
|
| >TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-40 Score=362.92 Aligned_cols=303 Identities=17% Similarity=0.244 Sum_probs=256.6
Q ss_pred ccHHHHHHhcCC-CchhHHHHHHHHHHHhcCCCeEEEe--EeEeeccCCCCCCCCCCCCCCcCCCCcccccCCCHHHHHH
Q psy8199 646 NELDEVINLFNL-PFNDLLFRAQKVHRKYFDANEIELA--VLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVIT 722 (965)
Q Consensus 646 ~~~~e~l~l~~~-~~~~l~~~a~~~~~~~~~g~~~~~~--~~i~~~s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~ 722 (965)
.+.+|++.||+. ++.+|+..|+++|++++.|++++++ .++++ |++|+++|.||++++.... ..++.+++|+|++
T Consensus 3 l~~~~~~~ll~~~~~~~l~~~A~~vr~~~~~g~~v~~~~~~~i~~-s~~C~~~C~fC~~~~~~~~--~~~~~ls~eei~~ 79 (340)
T TIGR03699 3 LSREEALELYKEADLLALGALADEVRRRRHPGNIVTFVVDRNINY-TNICVVGCKFCAFYRAPGH--PEGYVLSVEEILQ 79 (340)
T ss_pred CCHHHHHHHccCCcHHHHHHHHHHHHHHhcCCCeEEEEeeccccc-chhhccCCccCCcccCCCC--ccccCCCHHHHHH
Confidence 456788888854 6788999999998777658888754 56666 9999999999997653222 1234589999999
Q ss_pred HHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHhcCcEe-------------EEecCCCCHHHHHHHHHhCCCeE
Q psy8199 723 AAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLET-------------CLTLGMLNENQAYRLKKVGLDYY 789 (965)
Q Consensus 723 ~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~~~~i-------------~~~~~~~~~e~l~~Lk~aG~~~i 789 (965)
.++++.+.|+++|+|++|.++ ..+.+++.++++.|++.++.+ +.+.|..+++.+++||+||++++
T Consensus 80 ~~~~~~~~G~~~i~l~gG~~p--~~~~~~~~~li~~Ik~~~~~i~~~~~s~~ei~~~~~~~g~~~~e~l~~Lk~aG~~~~ 157 (340)
T TIGR03699 80 KIEELVAYGGTQILLQGGVNP--DLGLDYYEDLFRAIKARFPHIHIHSFSPVEIVYIAKKEGLSLREVLERLKEAGLDSI 157 (340)
T ss_pred HHHHHHHcCCcEEEEecCCCC--CCCHHHHHHHHHHHHHHCCCcCCCCCCHHHHHHHhccCCCCHHHHHHHHHHcCCCcC
Confidence 999999999999999888655 456888999999999754332 22457777999999999999999
Q ss_pred ec-cCCC-CHHHHhcccCC-CCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccccc-
Q psy8199 790 NH-NLDT-SPKLYGDIIST-RDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQ- 865 (965)
Q Consensus 790 ~i-~~es-~~~~~~~i~~~-~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P- 865 (965)
.. +.|+ ++++.+.+++. .++++|+++++.++++|+++++++|+|+|||.+|++++++.+++++ .+.+.+..|+|
T Consensus 158 ~~~g~E~~~~~~~~~~~~~~~s~~~~l~~i~~a~~~Gi~v~~~~iiGlgEt~ed~~~~l~~l~~l~--~~~~~~~~fIP~ 235 (340)
T TIGR03699 158 PGGGAEILSDRVRKIISPKKISSEEWLEVMETAHKLGLPTTATMMFGHVETLEDRIEHLERIRELQ--DKTGGFTAFIPW 235 (340)
T ss_pred CCCcccccCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCccceeEeeCCCCHHHHHHHHHHHHHhc--hhhCCeeEEEee
Confidence 85 7999 89999999864 5899999999999999999999999999999999999999999999 66655555555
Q ss_pred ---cCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccE---EeeCCccccCCCCCC--
Q psy8199 866 ---IKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANS---IFYGDKLLTTDNTKT-- 937 (965)
Q Consensus 866 ---~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~---~~~g~~~~t~~~~~~-- 937 (965)
++||||++.+++++++.++++|++|+++|+ .++++++|..++.+.++.+|.+|||+ ++..++++|+.|.+.
T Consensus 236 ~f~p~~tpl~~~~~~~~~e~l~~iA~~Rl~lp~-~~~i~~~~~~~g~~~~~~~l~~Gan~~~g~~~~~~~~~~~g~~~~~ 314 (340)
T TIGR03699 236 TFQPGNTELGKKRPATSTEYLKVLAISRIFLDN-IPNIQASWVTQGKEVGQLALHFGANDFGSTMLEENVVAAAGATHRA 314 (340)
T ss_pred cccCCCCcccCCCCCCHHHHHHHHHHHHHcCCC-CCcccCCccccChHHHHHHHhcCCccCCCccccccccccCCCCCCC
Confidence 379999998889999999999999999999 69999999988888899999999998 455455778888777
Q ss_pred --hhhHHHHHHcCCCcchhhh
Q psy8199 938 --NDDSKLLKKLGINTRNIKI 956 (965)
Q Consensus 938 --~~~~~~~~~~g~~~~~~~~ 956 (965)
+++.+|++++|++|.+|+.
T Consensus 315 ~~~~~~~~i~~~g~~~~~r~~ 335 (340)
T TIGR03699 315 SREEIIRIIREAGFIPAQRDT 335 (340)
T ss_pred CHHHHHHHHHHcCCCeeeecC
Confidence 9999999999999999874
|
members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine. |
| >PRK11025 23S rRNA pseudouridylate synthase C; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=360.04 Aligned_cols=208 Identities=33% Similarity=0.453 Sum_probs=167.5
Q ss_pred CCccEEEecCcEEEEECCCCCeeeeCCCCCcccHHHHHHHHCCcccCCCCccccccCCCCCceEEEeEeCHHHHHHHHHH
Q psy8199 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQ 106 (965)
Q Consensus 27 ~~~~i~~e~~~~lv~nKP~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~RLD~~tsGlll~a~~~~~~~~l~~~ 106 (965)
..++|+|||++|+|+|||+|++||++.+.. .++.+.+....+ ....+++|||||++||||||||||+++++.|+++
T Consensus 91 ~~~~Ilyed~~~lvvnKP~gl~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~vhRLD~~TSGlll~Ak~~~a~~~l~~~ 166 (317)
T PRK11025 91 LADVILYEDDHILVLNKPSGTAVHGGSGLS-FGVIEGLRALRP---EARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQ 166 (317)
T ss_pred CcCCEEEECCCEEEEECCCCCcCcCCCCCC-ccHHHHHHHhcc---CCCcCceeCCCCCCCceEEEEEcCHHHHHHHHHH
Confidence 457899999999999999999999876543 346666654433 1234678999999999999999999999999999
Q ss_pred HHcCCcCeEEEEEEcCccCC-CceEeeccccCCCCCeeEEEccCCCCcceEEEEEEeEEeeccCCcEEEEEEEeCCCccc
Q psy8199 107 LKMHIVQRKYLAMVWGIPKL-NGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTH 185 (965)
Q Consensus 107 ~~~~~~~K~Y~a~v~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~s~~~~~~~tGr~h 185 (965)
|+++.++|+|+|+|.|.+.. .+.++.++..+........+....++++|.|.|+++... .++|+|+|+|.|||+|
T Consensus 167 ~~~~~v~K~Y~a~v~G~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~gk~a~T~~~~l~~~----~~~sLv~~~~~TGRtH 242 (317)
T PRK11025 167 LREKGMQKDYLALVRGQWQSHVKVVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERY----AFATLVRASPVTGRTH 242 (317)
T ss_pred HHhCCccEEEEEEEeCcccCCCceEecccccCcccCCceEEecCCCCccceEEEEEeEEc----CCcEEEEEEeCCCCHH
Confidence 99999999999999998865 578888887664332222222234789999999999875 6789999999999999
Q ss_pred HHHHHHHHhCCceecCCCCCccccc----ccccccccccccccccccccCcccccccccCCCc
Q psy8199 186 QIRVHMQWLGHGIVGDNLYGKKYSK----SLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDD 244 (965)
Q Consensus 186 QIR~~~~~~g~pi~gD~~~~~~~~~----~~~~~~~~Lha~~l~f~~p~~~~~~~~~~~~p~~ 244 (965)
|||+||+++||||+||.+||.+... .....+++||++++.|.||.++....+ ..|++
T Consensus 243 QIRvhla~lG~PIlGD~~Yg~~~~~~~~~~~~~~r~~LHa~~l~f~~P~~~~~~~~--~aplP 303 (317)
T PRK11025 243 QIRVHTQYAGHPIAFDDRYGDREFDQQLTGTGLNRLFLHAAALKFTHPGTGEVMRI--EAPLD 303 (317)
T ss_pred HHHHHHHHCCCCEECCcccCCcccchhhhccCCcchhhhcCcceeeCCCCCCeEEE--EcCCC
Confidence 9999999999999999999964211 112467899999999999998876654 34543
|
|
| >TIGR00005 rluA_subfam pseudouridine synthase, RluA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-40 Score=357.25 Aligned_cols=230 Identities=45% Similarity=0.697 Sum_probs=180.8
Q ss_pred cccCCEEEEEcCCCCCCCCcccccCCCccEEEecCcEEEEECCCCCeeeeCCCCCcccHHHHHHHHCCcccCCCCccccc
Q psy8199 2 IISGYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVH 81 (965)
Q Consensus 2 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~e~~~~lv~nKP~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~ 81 (965)
|+.||.|.+..++. ... ........++|+|||++|+|+|||+|++||+.++....++.+.+..++.......++++||
T Consensus 47 v~~gd~I~i~~~~~-~~~-~~~~~~~~~~i~~ed~~~lvvnKP~g~~~~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~vh 124 (299)
T TIGR00005 47 VKDGDRITVRVPEE-EEH-EVPPQDIPLDILFEDEDIIVINKPSGLVVHPGGGNPFGTVLNALLAHCPPIAGVERVGIVH 124 (299)
T ss_pred CCCCCEEEEecCCc-ccc-cCCccCCCccEEEeCCCEEEEECCCCCeEeCCCCCCcccHHHHHHHhcccccCCCcCceEC
Confidence 56677776643221 010 1111223468999999999999999999999887666789998877664222234688999
Q ss_pred cCCCCCceEEEeEeCHHHHHHHHHHHHcCCcCeEEEEEEcCccCC-CceEeeccccCCCCCeeEEEccCCCCcceEEEEE
Q psy8199 82 RLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKL-NGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYE 160 (965)
Q Consensus 82 RLD~~tsGlll~a~~~~~~~~l~~~~~~~~~~K~Y~a~v~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~ 160 (965)
|||++||||||||||+++++.|+++|+++.+.|+|+|+|.|.+++ ++.++.++..+........+....+++++.|+|+
T Consensus 125 RLD~~TSGlll~ak~~~~~~~l~~~~~~~~v~K~Y~a~v~g~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~k~a~t~~~ 204 (299)
T TIGR00005 125 RLDRDTSGLMVVAKTPLALRELQRQLKNRTVTKEYVALVHGQFDSGGGTVDAPLGRVPNNRGLMAVHPSSEGKPAVTHFR 204 (299)
T ss_pred CCCCCCceEEEEEcCHHHHHHHHHHHHhCCcceEEEEEEeccccCCCCEEeCceecCCCCCceEEEecCCCCCeeeEEEE
Confidence 999999999999999999999999999999999999999999874 5788888876554444444433336899999999
Q ss_pred EeEEeeccCCcEEEEEEEeCCCcccHHHHHHHHhCCceecCCCCCccccc------ccccccccccccccccccccCccc
Q psy8199 161 RLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGKKYSK------SLIFNRQALHAYKLGLIHPKNNLK 234 (965)
Q Consensus 161 ~~~~~~~~~~~~s~~~~~~~tGr~hQIR~~~~~~g~pi~gD~~~~~~~~~------~~~~~~~~Lha~~l~f~~p~~~~~ 234 (965)
++... .++|+++|+|.|||+||||+||+++||||+||.+||.+... .....+++||++++.|.||.++..
T Consensus 205 ~l~~~----~~~slv~~~l~tGR~HQIR~hla~lG~pI~gD~~Yg~~~~~~~~~~~~~~~~r~~Lha~~l~f~~p~~~~~ 280 (299)
T TIGR00005 205 VLERF----GNASLVECELETGRTHQIRVHLQYLGHPLAGDPLYGNKPVPGNNLNGLLNFDRQALHAYELGFIHPATGEI 280 (299)
T ss_pred EeEEc----CCeEEEEEEeCCCChHHHHHHHHHCCCcEeCccccCCccccccccccccCCcchhhccCeeeccCCCCCCE
Confidence 99864 67899999999999999999999999999999999975321 122467899999999999988766
Q ss_pred ccc
Q psy8199 235 LKW 237 (965)
Q Consensus 235 ~~~ 237 (965)
..+
T Consensus 281 ~~~ 283 (299)
T TIGR00005 281 LEF 283 (299)
T ss_pred EEE
Confidence 543
|
modifies uracil-65 in transfer RNAs to pseudouridine. |
| >PRK10158 23S rRNA/tRNA pseudouridine synthase A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-40 Score=338.35 Aligned_cols=199 Identities=33% Similarity=0.516 Sum_probs=165.5
Q ss_pred CccEEEecCcEEEEECCCCCeeeeCCC-CCcccHHHHHHHHCCcccCCCCccccccCCCCCceEEEeEeCHHHHHHHHHH
Q psy8199 28 KLDIIYEDNEIIILNKSAGLVVHPAIG-NLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQ 106 (965)
Q Consensus 28 ~~~i~~e~~~~lv~nKP~G~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~v~RLD~~tsGlll~a~~~~~~~~l~~~ 106 (965)
.++|||||++|+|+|||+|++|+++.. ....++.+.+...++ ++.+|||||++||||||||+|.++++.|+++
T Consensus 13 ~~~iiyed~~~lvvnKPaGl~~~~~~~~~~~~sl~~~l~~~~~------~~~~vhRLDr~TSGlll~Akt~~~~~~l~~~ 86 (219)
T PRK10158 13 WLVILYQDEHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYP------QAESVHRLDMATSGVIVVALTKAAERELKRQ 86 (219)
T ss_pred CCCEEEeCCCEEEEECCCCCcEeCCCCCccchhHHHHHHHhCC------CCCEECCCCCCCceEEEEECCHHHHHHHHHH
Confidence 468999999999999999999998763 334577777765553 5789999999999999999999999999999
Q ss_pred HHcCCcCeEEEEEEcCccCC-CceEeeccccCCCCCeeEEEccCCCCcceEEEEEEeEEeeccCCcEEEEEEEeCCCccc
Q psy8199 107 LKMHIVQRKYLAMVWGIPKL-NGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTH 185 (965)
Q Consensus 107 ~~~~~~~K~Y~a~v~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~s~~~~~~~tGr~h 185 (965)
|.++++.|+|+|+|.|.+++ ++.++.++..+........+.. .+++.+.|.|+++.+. ....++++|+|.|||+|
T Consensus 87 f~~~~v~K~Yla~v~G~~~~~~~~i~~~i~~~~~~~~~~~~~~-~~gk~a~t~~~~l~~~---~~~~sll~~~~~TGRtH 162 (219)
T PRK10158 87 FREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCY-ETGKPAQTEYEVVEYA---ADNTARVVLKPITGRSH 162 (219)
T ss_pred HHhCCccEEEEEEEecccCCCCcEEecceecCCCCCceEEecC-CCCceeeEEEEEEEEc---CCCCEEEEEEeCCCCHH
Confidence 99999999999999999864 5788888876654444444442 3689999999999874 13358999999999999
Q ss_pred HHHHHHHHhCCceecCCCCCcccccccccccccccccccccccccCcccccc
Q psy8199 186 QIRVHMQWLGHGIVGDNLYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKW 237 (965)
Q Consensus 186 QIR~~~~~~g~pi~gD~~~~~~~~~~~~~~~~~Lha~~l~f~~p~~~~~~~~ 237 (965)
|||+||+++||||+||.+||...... ...+++||++++.|+||.+.....+
T Consensus 163 QIR~hla~lG~PIvGD~~Yg~~~~~~-~~~r~~Lha~~l~f~~P~~~~~~~~ 213 (219)
T PRK10158 163 QLRVHMLALGHPILGDRFYASPEARA-MAPRLLLHAEMLTITHPAYGNSMTF 213 (219)
T ss_pred HHHHHHHHCCCcEECCcccCCccccc-cccchhhhhCccCccCCCCCCeEEE
Confidence 99999999999999999999643221 2357899999999999988776543
|
|
| >PRK11112 tRNA pseudouridine synthase C; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=347.93 Aligned_cols=203 Identities=29% Similarity=0.399 Sum_probs=161.2
Q ss_pred ccEEEecCcEEEEECCCCCeeeeCCCCCcc--cHHHHHHHHCCcccCCCCccccccCCCCCceEEEeEeCHHHHHHHHHH
Q psy8199 29 LDIIYEDNEIIILNKSAGLVVHPAIGNLSG--TLFDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQ 106 (965)
Q Consensus 29 ~~i~~e~~~~lv~nKP~G~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~v~RLD~~tsGlll~a~~~~~~~~l~~~ 106 (965)
++|||||++|+|+|||+|++||+....... .+.+.+...+. ..+++|||||++||||||||||+++++.|+++
T Consensus 2 l~IlyEd~~~lvvnKPaGl~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~VHRLDr~TSGlll~Ak~~~~~~~L~~~ 76 (257)
T PRK11112 2 LEILYQDEWLVAVNKPAGWLVHRSWLDRHETVFVMQTVRDQIG-----QHVFTAHRLDRPTSGVLLMALSSEVARLLAQQ 76 (257)
T ss_pred CcEEEecCCEEEEECCCCCeecCCCCCCCchHHHHHHHHHHhC-----CCceeeccCCCCCeeEEEEECCHHHHHHHHHH
Confidence 579999999999999999999987533222 34455544432 25779999999999999999999999999999
Q ss_pred HHcCCcCeEEEEEEcCccCCCceEeeccccCCCCCeeEEEccCCCCcceEEEEEEeEEee-------ccCCcEEEEEEEe
Q psy8199 107 LKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGI-------INKKHISLIRCNL 179 (965)
Q Consensus 107 ~~~~~~~K~Y~a~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~-------~~~~~~s~~~~~~ 179 (965)
|+++++.|+|+|+|.|.+..++.++.++..+.............+++++.|.|+++.... ....++|+++|+|
T Consensus 77 f~~~~v~K~Y~Alv~G~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~k~a~T~~~~l~~~~~~~~~~~~~~~~~slv~i~~ 156 (257)
T PRK11112 77 FEQHQIQKTYHAIVRGWLMEEAVLDYPLKEELDKIADKFAREDKAPQPAVTHYRGLATVEMPVATGRYPTTRYSLVELEP 156 (257)
T ss_pred HHhCCcceEEEEEEEeEeCCCCeEeeeeeecccccceeecccCCCCeEeEEEEEEEEEecccccccccCCCCeEEEEEEc
Confidence 999999999999999998777888888876533322222222346899999999997531 1224689999999
Q ss_pred CCCcccHHHHHHHHhCCceecCCCCCccccc-----ccccccccccccccccccccCccccc
Q psy8199 180 KTGRTHQIRVHMQWLGHGIVGDNLYGKKYSK-----SLIFNRQALHAYKLGLIHPKNNLKLK 236 (965)
Q Consensus 180 ~tGr~hQIR~~~~~~g~pi~gD~~~~~~~~~-----~~~~~~~~Lha~~l~f~~p~~~~~~~ 236 (965)
.|||+||||+||+++||||+||.+||..... .....+++||++++.|.||.++....
T Consensus 157 ~TGRtHQIRvhla~lG~PIvGD~~Yg~~~~~~~~~~~~~~~rl~LHA~~L~F~hP~t~e~~~ 218 (257)
T PRK11112 157 KTGRKHQLRRHMAHLRHPIIGDTKHGDLRQNRSLAEHFGCSRLMLHASELSLTHPFTGEPLT 218 (257)
T ss_pred CCCChHHHHHHHHHcCCCEeCCcccCCcccchhhhhccCCcchhHhhCccCccCCCCCCEEE
Confidence 9999999999999999999999999974211 12246789999999999998877654
|
|
| >TIGR02351 thiH thiazole biosynthesis protein ThiH | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-39 Score=357.76 Aligned_cols=314 Identities=20% Similarity=0.269 Sum_probs=270.6
Q ss_pred cCHHHHHHHHHhhhcccccHHHHHHhcCCC----chhHHHHHHHHHHHhcCCCeEEEeEeEeeccCCCCCCCCCCCCCCc
Q psy8199 629 LNKNEIQHMTSAIFQTFNELDEVINLFNLP----FNDLLFRAQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTH 704 (965)
Q Consensus 629 ~t~~~i~~~~~~l~~~~~~~~e~l~l~~~~----~~~l~~~a~~~~~~~~~g~~~~~~~~i~~~s~~C~~~C~fC~~~~~ 704 (965)
.+.++++++++ +...+.+|++.|++.+ +.+|+..|+++|++++ |+++.++.++++ ||.|+++|.||+|+..
T Consensus 21 ~~~~~~~~~l~---g~~ls~~e~~~Ll~~~~~~~l~~L~~~A~~ir~~~~-G~~v~l~~~i~~-Tn~C~~~C~yC~~s~~ 95 (366)
T TIGR02351 21 FTAADVERALN---KRHLSLEDFLALLSPAAEPYLEEMAQKAKKLTRKRF-GNTISLFTPLYL-SNYCSNKCVYCGFSMS 95 (366)
T ss_pred CCHHHHHHHHh---CCCCCHHHHHHHhCCCchHHHHHHHHHHHHHHHHHc-CCEEEEEeeeeE-CccccCCCCcCCCCCC
Confidence 44666666553 4567889999998653 6778999999988888 899999999997 9999999999999875
Q ss_pred CCCCcccccCCCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHhcCcEeEEecCCCCHHHHHHHHHh
Q psy8199 705 YNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKV 784 (965)
Q Consensus 705 ~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~e~l~~Lk~a 784 (965)
++ ..+ +.+++|||.++++.+.+.|++++++++|..+ ...++++++++++.+++....+.++.+.++.+.++.|+++
T Consensus 96 ~~--~~~-~~Ls~eEI~~~a~~~~~~Gv~~i~lvgGe~p-~~~~~e~l~eii~~Ik~~~p~i~Iei~~lt~e~~~~Lk~a 171 (366)
T TIGR02351 96 NK--IKR-KKLNEEEIEREIEAIKKSGFKEILLVTGESE-KAAGVEYIAEAIKLAREYFSSLAIEVQPLNEEEYKKLVEA 171 (366)
T ss_pred CC--Ccc-CcCCHHHHHHHHHHHHhCCCCEEEEeeCCCC-CCCCHHHHHHHHHHHHHhCCccccccccCCHHHHHHHHHc
Confidence 33 334 4589999999999999999999999987644 4567999999999999866555566678999999999999
Q ss_pred CCCeEeccCCC-CHHHHhccc---CCCCHHHHHHHHHHHHHcCCc-eeeeEEEecCCCHHHHHHHHHHHHhcCC----CC
Q psy8199 785 GLDYYNHNLDT-SPKLYGDII---STRDYENRLNTLKNVRNVGIN-ICCGGIIGLSESRDQRAELIFQLANLNP----YP 855 (965)
Q Consensus 785 G~~~i~i~~es-~~~~~~~i~---~~~~~~~~~~~i~~~~~~Gi~-v~~~~i~Gl~et~ed~~~~l~~l~~l~~----~~ 855 (965)
|++++++++|| +++.|++++ +.|++++++++++.++++|+. +++++|+|+||+.+|.++++.++++|+. ..
T Consensus 172 Gv~r~~i~lET~~~~~y~~i~~~g~~h~~~~rl~~i~~a~~aG~~~v~~g~i~Gl~e~~~d~~~~a~~l~~L~~~~~~~~ 251 (366)
T TIGR02351 172 GLDGVTVYQETYNEKKYKKHHLAGKKKDFRYRLNTPERAAKAGMRKIGIGALLGLDDWRTDAFFTAYHLRYLQKKYWKTE 251 (366)
T ss_pred CCCEEEEEeecCCHHHHHhcCcCCCCCCHHHHHHHHHHHHHcCCCeeceeEEEeCchhHHHHHHHHHHHHHHHHHcCCCC
Confidence 99999999999 899999998 578999999999999999997 8999999999999999999999999984 12
Q ss_pred CceeeccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccch----hhHHHHhhcCccEEeeCCcccc
Q psy8199 856 ESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGE----TTQAFCFLAGANSIFYGDKLLT 931 (965)
Q Consensus 856 ~~i~~~~~~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~----~~~~~~l~~Gan~~~~g~~~~t 931 (965)
.+|+++.++|.+| |++...+.++.+++++++++|+++|+..|+++++++.... +++...+.+ +|++++|++ +|
T Consensus 252 ~sv~~~~l~P~~g-~~~~~~~l~~~~~~~~i~~~R~~~P~~~i~~s~g~~~~lrd~~~~~~~~~~~a-~~~~~~G~y-~~ 328 (366)
T TIGR02351 252 ISISVPRLRPCTN-GLKPKVIVTDRELVQIICAYRLFDPFVEISLSTRESKKFRDNVIPLGITKMSA-GSSTEPGGY-SS 328 (366)
T ss_pred ccccccccccCCC-CCCCCCcCCHHHHHHHHHHHHHhCcccccEEecCCCHHHHHHHHhhcceeecc-CcccCCCCc-CC
Confidence 6899999999999 9999899999999999999999999999999999965434 444455655 899999995 46
Q ss_pred CCC----------CCChhhHHHHHHcCCCcchh
Q psy8199 932 TDN----------TKTNDDSKLLKKLGINTRNI 954 (965)
Q Consensus 932 ~~~----------~~~~~~~~~~~~~g~~~~~~ 954 (965)
+.| ++++++.+||+++|+.|...
T Consensus 329 ~~~~~~qf~~~d~r~~~~~~~~i~~~g~~~~~~ 361 (366)
T TIGR02351 329 EKKGLEQFEISDERSVAEVEEDLRSKGLQPVWK 361 (366)
T ss_pred CCCCcCcccCCCCCCHHHHHHHHHHCCCeeccc
Confidence 666 89999999999999999654
|
Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes. |
| >PRK07094 biotin synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-38 Score=344.53 Aligned_cols=272 Identities=23% Similarity=0.365 Sum_probs=245.6
Q ss_pred cHHHHHHhcCCCc----hhHHHHHHHHHHHhcCCCeEEEeEeEeeccCCCCCCCCCCCCCCcCCCCcccccCCCHHHHHH
Q psy8199 647 ELDEVINLFNLPF----NDLLFRAQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVIT 722 (965)
Q Consensus 647 ~~~e~l~l~~~~~----~~l~~~a~~~~~~~~~g~~~~~~~~i~~~s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~ 722 (965)
+.+|++.||+.+. .+|...|+++|++++ |+++++++++++ |++|+++|.||+++... ....+++ +++++|++
T Consensus 2 t~~e~~~ll~~~~~~~~~~L~~~A~~~r~~~~-g~~v~~~~~i~~-s~gC~~~C~fC~~~~~~-~~~~r~~-ls~eei~~ 77 (323)
T PRK07094 2 TRDEILELLSNDDEEELKYLFKAADEVRKKYV-GDEVHLRGLIEF-SNYCRNNCLYCGLRRDN-KNIERYR-LSPEEILE 77 (323)
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC-CCEEEEEEEEEE-CCCCCCCCEeCCcccCC-CCCcCcC-CCHHHHHH
Confidence 4678888886532 248899999988887 899999999999 99999999999988643 2223455 79999999
Q ss_pred HHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHh-cCcEeEEecCCCCHHHHHHHHHhCCCeEeccCCC-CHHHH
Q psy8199 723 AAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLY 800 (965)
Q Consensus 723 ~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~-~~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~~es-~~~~~ 800 (965)
+++.+.+.|++.|+|++|.++ ..+.+++.++++.+++ .++.+.++.+..+++.++.|+++|++++.+++|| +++.+
T Consensus 78 ~~~~~~~~g~~~i~l~gG~~~--~~~~~~l~~l~~~i~~~~~l~i~~~~g~~~~e~l~~Lk~aG~~~v~~glEs~~~~~~ 155 (323)
T PRK07094 78 CAKKAYELGYRTIVLQSGEDP--YYTDEKIADIIKEIKKELDVAITLSLGERSYEEYKAWKEAGADRYLLRHETADKELY 155 (323)
T ss_pred HHHHHHHCCCCEEEEecCCCC--CCCHHHHHHHHHHHHccCCceEEEecCCCCHHHHHHHHHcCCCEEEeccccCCHHHH
Confidence 999999999999999988644 3457899999999998 5888888999999999999999999999999999 89999
Q ss_pred hcccCCCCHHHHHHHHHHHHHcCCceeeeEEEec-CCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCCCCCCCH
Q psy8199 801 GDIISTRDYENRLNTLKNVRNVGINICCGGIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDP 879 (965)
Q Consensus 801 ~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl-~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~~~~~~~ 879 (965)
+.+++++++++++++++.++++|+.+++++|+|+ |||.+++.++++++++++ ++.+++++|+|.||||+++.++.+.
T Consensus 156 ~~i~~~~s~~~~~~~i~~l~~~Gi~v~~~~iiGlpget~ed~~~~l~~l~~l~--~~~v~~~~~~P~pgTpl~~~~~~~~ 233 (323)
T PRK07094 156 AKLHPGMSFENRIACLKDLKELGYEVGSGFMVGLPGQTLEDLADDILFLKELD--LDMIGIGPFIPHPDTPLKDEKGGSL 233 (323)
T ss_pred HHhCCCCCHHHHHHHHHHHHHcCCeecceEEEECCCCCHHHHHHHHHHHHhCC--CCeeeeeccccCCCCCcccCCCCCH
Confidence 9999999999999999999999999999999999 899999999999999999 9999999999999999999988999
Q ss_pred HHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeC
Q psy8199 880 LEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYG 926 (965)
Q Consensus 880 ~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g 926 (965)
++.+++++++|+++|+..|+..++|..++++.++.+|.+|||++|..
T Consensus 234 ~~~~~~~a~~R~~lp~~~i~~~~~~~~~~~~~~~~~l~~Gan~~~~~ 280 (323)
T PRK07094 234 ELTLKVLALLRLLLPDANIPATTALGTLNPDGREKGLKAGANVVMPN 280 (323)
T ss_pred HHHHHHHHHHHHhCcCCCCcccCCccccCchhHHHHHHcCCceecCC
Confidence 99999999999999999899999999898888899999999998853
|
|
| >TIGR01621 RluA-like pseudouridine synthase Rlu family protein, TIGR01621 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-39 Score=328.35 Aligned_cols=184 Identities=28% Similarity=0.466 Sum_probs=153.7
Q ss_pred ccEEEecCcEEEEECCCCCeeeeCCCCCcccHHHHHHHHCCcccCCCCccccccCCCCCceEEEeEeCHHHHHHHHHHHH
Q psy8199 29 LDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLK 108 (965)
Q Consensus 29 ~~i~~e~~~~lv~nKP~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~RLD~~tsGlll~a~~~~~~~~l~~~~~ 108 (965)
++|||||++|+|+|||+|++|+++.+. .++.+.+..... .+.+.+|||||++||||||||||+++++.|+++|+
T Consensus 2 ~~ilyed~~~lvvnKP~Gl~v~~~~~~--~~l~~~l~~~~~----~~~~~~VhRLDr~TSGlll~Ak~~~~~~~L~~~~~ 75 (217)
T TIGR01621 2 FEILFTHPDFLLINKHPGISVHKDDGE--TGLLQEVATQLG----VGQVWLVHRLDKMTSGILLLALNAESASELSQGFA 75 (217)
T ss_pred ceEEEeCCCEEEEECCCCCeECCCCCc--ChHHHHHHHhcC----CCCccEecCCCCCCceEEEEEcCHHHHHHHHHHHh
Confidence 579999999999999999999986542 356666654432 24688999999999999999999999999999999
Q ss_pred cCCcCeEEEEEEcCccCC-CceEeeccccCCCCCeeEEEccCCCCcceEEEEEEeEEeeccCCcEEEEEEEeCCCcccHH
Q psy8199 109 MHIVQRKYLAMVWGIPKL-NGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQI 187 (965)
Q Consensus 109 ~~~~~K~Y~a~v~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~s~~~~~~~tGr~hQI 187 (965)
++.++|+|+|+|.|.+.+ ++.++.++........ .+.. .+++++.|+|+++... .++|+++|+|.|||+|||
T Consensus 76 ~~~v~K~YlAlV~g~~~~~~~~i~~~~~~~~~~~~--~~~~-~~~k~a~t~~~~~~~~----~~~slv~~~~~TGR~HQI 148 (217)
T TIGR01621 76 KRKIEKTYLALSSKKPKKKQGLICGDMEKSRRGSW--KLVN-SQENPAITRFFSASAA----TGLRLFILKPHTGKTHQL 148 (217)
T ss_pred cCCccEEEEEEEeccccCCCCEEeCCcccCCCCCE--EEeC-CCCCceeEEEEEEEEc----CCeEEEEEEeCCCCHHHH
Confidence 999999999999998865 5788877765433322 2222 3678999999999875 678999999999999999
Q ss_pred HHHHHHhCCceecCCCCCcccccccccccccccccccccccc
Q psy8199 188 RVHMQWLGHGIVGDNLYGKKYSKSLIFNRQALHAYKLGLIHP 229 (965)
Q Consensus 188 R~~~~~~g~pi~gD~~~~~~~~~~~~~~~~~Lha~~l~f~~p 229 (965)
|+||+++||||+||++||.... ..+++||++++.|+|+
T Consensus 149 Rvhla~lG~PIlGD~~Yg~~~~----~~~~~Lha~~l~f~~~ 186 (217)
T TIGR01621 149 RVAMKSLGSPILGDPLYGTTDE----SDRGYLHAFALRFDYQ 186 (217)
T ss_pred HHHHHHCCCceeCCcccCCCCC----ccCceeeeeEeEEEEC
Confidence 9999999999999999997421 3678999999999985
|
This model represents a clade of sequences within the pseudouridine synthase superfamily (pfam00849). The superfamily includes E. coli proteins: RluA, RluB, RluC, RluD, and RsuA. The sequences modeled here are most closely related to RluA. Neisseria, among those species hitting this model, does not appear to have an RluA homolog. It is presumed that these sequences function as pseudouridine synthases, although perhaps with different specificity. |
| >PRK09234 fbiC FO synthase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-38 Score=372.52 Aligned_cols=322 Identities=22% Similarity=0.285 Sum_probs=278.2
Q ss_pred ccCHHHHHHHHHhhhc-ccccHHHHHHhcC---CCchhHHHHHHHHHHHhcCCC-----eEEEe--EeEeeccCCCCCCC
Q psy8199 628 ILNKNEIQHMTSAIFQ-TFNELDEVINLFN---LPFNDLLFRAQKVHRKYFDAN-----EIELA--VLLSIKTGGCTEDC 696 (965)
Q Consensus 628 ~~t~~~i~~~~~~l~~-~~~~~~e~l~l~~---~~~~~l~~~a~~~~~~~~~g~-----~~~~~--~~i~~~s~~C~~~C 696 (965)
..+...++++++++.. ...+.+|++.|+. .++.+|+..|+++|++++ |+ .++++ ..|++ ||.|.++|
T Consensus 8 ~~~~~~~~~~l~k~~~g~~ls~eEa~~Ll~~~~~dl~~L~~~A~~vR~~~~-G~~~~~~~Vty~~n~~In~-Tn~C~~~C 85 (843)
T PRK09234 8 TPTASAMRRALRRARDGVTLDVDEAAVLLTARGDDLADLCASAARVRDAGL-GAAGRPGVVTYSRKVFIPL-TRLCRDRC 85 (843)
T ss_pred CCCHHHHHHHHHHHHcCCCCCHHHHHHHhcCCCccHHHHHHHHHHHHHHHc-CCcccCceEEEEeEEEecC-CCCCCCCC
Confidence 4667788888888764 5788899999983 357889999999988888 77 76655 68888 99999999
Q ss_pred CCCCCCCcCCCCcccccCCCHHHHHHHHHHHHHCCCCEEEEeeccCCCCc--------------ccHHHHHHHHHHHHh-
Q psy8199 697 GYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKD--------------RDLDNIENMICEVKK- 761 (965)
Q Consensus 697 ~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~--------------~~~~~~~~~~~~i~~- 761 (965)
.||+|++..+. ..+..+++|||++.++++.+.|++++++++|.+|... ..++++.++++.+++
T Consensus 86 ~YCaF~~~~~~--~~~~~ls~eEIl~~a~~~~~~G~~e~l~t~G~~P~~~~~~~~~~l~~~gy~~~~ey~~~~~~~ik~~ 163 (843)
T PRK09234 86 HYCTFATVPGK--LEAAYLSPDEVLDIARAGAAAGCKEALFTLGDRPEDRWPEAREWLDERGYDSTLDYVRAMAIRVLEE 163 (843)
T ss_pred CcCCCccCCCC--CccccCCHHHHHHHHHHHHHCCCCEEEEecCCCCccccccccccccccccccHHHHHHHHHHHHHHh
Confidence 99999875442 2455599999999999999999999999999877432 147999999999996
Q ss_pred cCcEeEEecCCCCHHHHHHHHHhCCCeEeccCCC-CHHHHhc------ccCCCCHHHHHHHHHHHHHcCCceeeeEEEec
Q psy8199 762 IGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGD------IISTRDYENRLNTLKNVRNVGINICCGGIIGL 834 (965)
Q Consensus 762 ~~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~~es-~~~~~~~------i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl 834 (965)
.++..+++.|.++.+.++.|+++|++ +.+.+|| ++++|++ +++++.+++|+++++.++++|+++++++|+|+
T Consensus 164 ~gl~p~i~~G~ls~~E~~~Lk~~g~s-~gl~lEt~~~~l~~~~g~~h~~~P~K~~~~RL~ti~~A~~lGi~~tsG~L~Gi 242 (843)
T PRK09234 164 TGLLPHLNPGVMSWSELARLKPVAPS-MGMMLETTSRRLFEEKGGPHYGSPDKDPAVRLRVLEDAGRLSVPFTTGILIGI 242 (843)
T ss_pred cCCCceeeeCCCCHHHHHHHHHhcCc-CCCCHHHHHHHHHHhhcccccCCCCCCHHHHHHHHHHHHHcCCCccceEEEEC
Confidence 68888999999999999999999998 6799999 8888754 45677899999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCC---CCCceeeccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhh
Q psy8199 835 SESRDQRAELIFQLANLNP---YPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETT 911 (965)
Q Consensus 835 ~et~ed~~~~l~~l~~l~~---~~~~i~~~~~~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~ 911 (965)
|||.+|+++++..|+++++ ++..+++++|.|.|||||++.++++++++++++|++|++||+. ++||++|+.++.+.
T Consensus 243 GEt~edRve~L~~LR~Lq~~~g~~~evi~~~F~p~~gT~l~~~~~~s~~e~Lr~iAvaRliL~~~-~~Iqa~~~l~g~~~ 321 (843)
T PRK09234 243 GETLAERAESLFAIRKLHREYGHIQEVIVQNFRAKPDTAMAGVPDAGLEELLATIAVARLVLGPK-MRIQAPPNLVSGDE 321 (843)
T ss_pred CCCHHHHHHHHHHHHHhhHhhCCCcEEeecccccCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCC-ceeeCccccCCHHH
Confidence 9999999999999999975 4788999999999999999999999999999999999999887 89999999998888
Q ss_pred HHHHhhcCccEEeeCCccccCCC-------CCChhhHHHHHHcCCCcchhhh
Q psy8199 912 QAFCFLAGANSIFYGDKLLTTDN-------TKTNDDSKLLKKLGINTRNIKI 956 (965)
Q Consensus 912 ~~~~l~~Gan~~~~g~~~~t~~~-------~~~~~~~~~~~~~g~~~~~~~~ 956 (965)
.+.+|.+|||+ +.|.+.+|.+. .+.++..++++++|+.|.+|+.
T Consensus 322 ~~~~L~~GanD-~GG~~~~~~d~~~p~~~~~~~~~l~~~~~~aG~~~~eR~t 372 (843)
T PRK09234 322 CAALLGAGIDD-WGGVSPLTPDHVNPERPWPQLDELAAVTAEAGFTLVERLT 372 (843)
T ss_pred HHHHHhcCCCc-ccchhhhHhhccCccCCCCCHHHHHHHHHHcCCCcccccC
Confidence 89999999998 45554444432 2468899999999999998874
|
|
| >cd02557 PseudoU_synth_ScRIB2 PseudoU_synth_ScRIB2_like: Pseudouridine synthase, Saccharomyces cerevisiae RIB2_like | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=323.91 Aligned_cols=186 Identities=31% Similarity=0.427 Sum_probs=156.3
Q ss_pred CCccEEEecCcEEEEECCCCCeeeeCCCCCcccHHHHHHHHCCcccCCCCccccccCCCCCceEEEeEeCHHHHHHHHHH
Q psy8199 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQ 106 (965)
Q Consensus 27 ~~~~i~~e~~~~lv~nKP~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~RLD~~tsGlll~a~~~~~~~~l~~~ 106 (965)
..++|+|||++|+|+|||+|++|+++......++.+.+...+. ...+.+|||||++||||||||||++++++|+++
T Consensus 14 ~~~~iiyed~~~ivvnKP~Gl~~~~~~~~~~~sl~~~l~~~~~----~~~~~~vhRLD~~TSGllllak~~~~~~~l~~~ 89 (213)
T cd02557 14 DPIKIVHEDDDLLVVDKPSGIPVHPTGRYRYNTVTEILKSEYG----LTELRPCHRLDRLTSGLLLFAKTSQTASRLQQQ 89 (213)
T ss_pred CCCcEEEECCCEEEEECCCCCcCCCCCCCCcChHHHHHHHHcC----CCCccCccCCCCCCceEEEEECCHHHHHHHHHH
Confidence 4678999999999999999999998766556788888876553 136789999999999999999999999999999
Q ss_pred HHcCCcCeEEEEEEcCccCC-CceEeeccccCCCCCeeEEEccCCCCcceEEEEEEeEEeeccCCcEEEEEEEeCCCccc
Q psy8199 107 LKMHIVQRKYLAMVWGIPKL-NGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTH 185 (965)
Q Consensus 107 ~~~~~~~K~Y~a~v~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~s~~~~~~~tGr~h 185 (965)
|++++++|+|+|+|.|.+++ .+.++.++..+..... .......+++++.|.|+++... +..+.|+++|+|.|||+|
T Consensus 90 f~~~~v~K~Y~a~v~G~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~~~a~t~~~~~~~~--~~~~~slv~v~~~TGR~H 166 (213)
T cd02557 90 IRSREVKKEYLARVKGEFPDGEVVVDQPIGLVSPKGG-LRNDVDEKGKDARTIFKRLSYN--GDLNTSVVLCKPITGRTH 166 (213)
T ss_pred HHcCCccEEEEEEEeCcCCCCCeEEecceeccCcCCc-eeeccCCCCceeeEEEEEEEEc--CCCCeEEEEEEeCCCCHH
Confidence 99999999999999999875 5778888765533211 1122234689999999999874 113789999999999999
Q ss_pred HHHHHHHHhCCceecCCCCCcccccccccccccccccccccc
Q psy8199 186 QIRVHMQWLGHGIVGDNLYGKKYSKSLIFNRQALHAYKLGLI 227 (965)
Q Consensus 186 QIR~~~~~~g~pi~gD~~~~~~~~~~~~~~~~~Lha~~l~f~ 227 (965)
|||+||+++||||+||.+||. .+++||++++.|+
T Consensus 167 QIR~hla~lG~PIlGD~~Yg~--------~~l~Lha~~l~f~ 200 (213)
T cd02557 167 QIRVHLQYLGHPIVNDPIYNN--------LGIYLHALRYEGP 200 (213)
T ss_pred HHHHHHHHCCCCCcCccccCC--------cChhhhhccCcCc
Confidence 999999999999999999996 3579999999996
|
This group is comprised of eukaryotic and bacterial proteins similar to Saccharomyces cerevisiae RIB2, S. cerevisiae Pus6p and human hRPUDSD2. S. cerevisiae RIB2 displays two distinct catalytic activities. The N-terminal domain of RIB2 is RNA:psi-synthase which makes psi32 on cytoplasmic tRNAs. Psi32 is highly phylogenetically conserved. The C-terminal domain of RIB2 has a DRAP deaminase activity which catalyses the formation of 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione 5'-phosphate from 2,5-diamino-6-ribitylamino-4(3H)-pyrimidinone 5'-phosphate during riboflavin biosynthesis. S. cerevisiae Pus6p makes the psi31 of cytoplasmic and mitochondrial tRNAs. |
| >PRK09234 fbiC FO synthase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-37 Score=365.29 Aligned_cols=321 Identities=16% Similarity=0.212 Sum_probs=262.7
Q ss_pred ccCHHHHHHHHHhhh-cccccHHHHHHhcC---CCchhHHHHHHHHHHHhcCCCeEEE--eEeEeeccCCCCCCCCCCCC
Q psy8199 628 ILNKNEIQHMTSAIF-QTFNELDEVINLFN---LPFNDLLFRAQKVHRKYFDANEIEL--AVLLSIKTGGCTEDCGYCPQ 701 (965)
Q Consensus 628 ~~t~~~i~~~~~~l~-~~~~~~~e~l~l~~---~~~~~l~~~a~~~~~~~~~g~~~~~--~~~i~~~s~~C~~~C~fC~~ 701 (965)
.++.+...-+.++.. ....+.++++.|++ .++.+|+..|+++|++++ |+.+++ +.+||+ ||.|+.+|.||+|
T Consensus 468 ~~~~~v~~~l~~~~~~g~~ls~~eal~Ll~~~~~~l~~L~~~Ad~iR~~~~-G~~Vt~vvn~~In~-TN~C~~~C~FCaf 545 (843)
T PRK09234 468 RIDTDVLAALRAAERDPAGLTDDEALALFTADGPALEAVCRLADDLRRDVV-GDDVTYVVNRNINF-TNICYTGCRFCAF 545 (843)
T ss_pred cccHHHHHHHHHHHhcCCCCCHHHHHHHHcCCchhHHHHHHHHHHHHHHhc-CCeEEEEEeeceec-CCCCCCCCccccc
Confidence 344443333333433 35678999999995 357889999999988887 888764 567888 9999999999999
Q ss_pred CCcCCCCcccccCCCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHhc--CcEeEE-----------
Q psy8199 702 STHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI--GLETCL----------- 768 (965)
Q Consensus 702 ~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~--~~~i~~----------- 768 (965)
++. ......|. +++|||++.++++.+.|+++|++++|.++ ..+.++++++++.||+. ++.++.
T Consensus 546 s~~-~~~~~~y~-Ls~eeI~~~a~ea~~~G~tev~i~gG~~p--~~~~~~y~~lir~IK~~~p~i~i~afsp~Ei~~~a~ 621 (843)
T PRK09234 546 AQR-KTDADAYT-LSLDEVADRAWEAWVAGATEVCMQGGIHP--ELPGTGYADLVRAVKARVPSMHVHAFSPMEIVNGAA 621 (843)
T ss_pred ccC-CCCCCccc-CCHHHHHHHHHHHHHCCCCEEEEecCCCC--CcCHHHHHHHHHHHHHhCCCeeEEecChHHHHHHHH
Confidence 985 33445666 89999999999999999999999988766 46789999999999985 455532
Q ss_pred ecCCCCHHHHHHHHHhCCCeEeccCCC--CHHHHhcccCCC-CHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHH
Q psy8199 769 TLGMLNENQAYRLKKVGLDYYNHNLDT--SPKLYGDIISTR-DYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELI 845 (965)
Q Consensus 769 ~~~~~~~e~l~~Lk~aG~~~i~i~~es--~~~~~~~i~~~~-~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l 845 (965)
+.|...+|.+++||+||++++..+-.. ++++.+.+++++ +.++|+++++.+|++||++++++|||++||.+|+++++
T Consensus 622 ~~Gl~~~e~l~~LkeAGLds~pgt~aeil~d~vr~~i~p~k~~~~~wle~i~~Ah~lGi~~~stmm~G~~Et~edrv~hl 701 (843)
T PRK09234 622 RLGLSIREWLTALREAGLDTIPGTAAEILDDEVRWVLTKGKLPTAEWIEVVTTAHEVGLRSSSTMMYGHVDTPRHWVAHL 701 (843)
T ss_pred HcCCCHHHHHHHHHHhCcCccCCCchhhCCHHHHhhcCCCCCCHHHHHHHHHHHHHcCCCcccceEEcCCCCHHHHHHHH
Confidence 457889999999999999999875444 678888888744 89999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCceeeccccc----cCCCCCC----CCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhh
Q psy8199 846 FQLANLNPYPESVPINNLVQ----IKGTPLY----GSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFL 917 (965)
Q Consensus 846 ~~l~~l~~~~~~i~~~~~~P----~~gT~l~----~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~ 917 (965)
..|++++ .+...+..|+| +++||++ ..++++..++++++|++|++||+..++++++|..++.+.++.+|.
T Consensus 702 ~~LreLq--~~tgGf~~fIPl~F~~~~tpl~l~~~~~~~~t~~e~Lr~iAvaRl~Lp~~i~~Iqa~wv~lg~~~~q~~L~ 779 (843)
T PRK09234 702 RVLRDIQ--DRTGGFTEFVPLPFVHQNAPLYLAGAARPGPTHRENRAVHALARIMLHGRIDNIQTSWVKLGVEGTRAMLR 779 (843)
T ss_pred HHHHhcC--cccCCeeeeeeccccCCCCCcccccCCCCCCCHHHHHHHHHHHHHhCCCCcccccchhhhcCHHHHHHHHh
Confidence 9999999 55444444554 5688884 246689999999999999999987789999999999988899999
Q ss_pred cCccE---EeeCCccccCCC------CCChhhHHHHHHcCCCcchhhh
Q psy8199 918 AGANS---IFYGDKLLTTDN------TKTNDDSKLLKKLGINTRNIKI 956 (965)
Q Consensus 918 ~Gan~---~~~g~~~~t~~~------~~~~~~~~~~~~~g~~~~~~~~ 956 (965)
+|||+ ++.+|++....| .++++...+++++|+.|.+|+.
T Consensus 780 ~GaNDlgGtl~ee~i~~~aG~~~~~~~~~~~l~~~i~~aG~~p~~R~t 827 (843)
T PRK09234 780 GGANDLGGTLMEETISRMAGSEHGSAKTVAELEAIAEGAGRPARQRTT 827 (843)
T ss_pred cCCcCcccccccceeeeccCCCCCCCCCHHHHHHHHHHcCCCeeeecC
Confidence 99996 445566653333 3568999999999999999875
|
|
| >TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=331.19 Aligned_cols=272 Identities=21% Similarity=0.316 Sum_probs=230.3
Q ss_pred EEEeEeEeeccCCCCCCCCCCCCCCcCCCCcccccCCCHHHHHHHHHHHHHCCCCEEEEeeccCCCCc------------
Q psy8199 679 IELAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKD------------ 746 (965)
Q Consensus 679 ~~~~~~i~~~s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~------------ 746 (965)
+..+..|++ ||+|+++|.||+|++..+ ...++.+++|+|+++++++.+.|++++++++|.+|...
T Consensus 2 ~~~n~~i~~-tn~C~~~C~fCaf~~~~g--~~~~~~l~~eeI~~~a~~~~~~G~~ei~l~~G~~p~~~~~~~~~~l~~~~ 78 (322)
T TIGR03550 2 YSRNVFIPL-TRLCRNRCGYCTFRRPPG--ELEAALLSPEEVLEILRKGAAAGCTEALFTFGEKPEERYPEAREWLAEMG 78 (322)
T ss_pred ccceEEecc-ccCcCCCCccCCccccCC--CcccccCCHHHHHHHHHHHHHCCCCEEEEecCCCccccHHHHHHHHHhcC
Confidence 456788899 999999999999987533 33455699999999999999999999999999876332
Q ss_pred --ccHHHHHHHHHHHHh-cCcEeEEecCCCCHHHHHHHHHhCCCeEeccCCC-CHHHHhccc----CCCCHHHHHHHHHH
Q psy8199 747 --RDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDII----STRDYENRLNTLKN 818 (965)
Q Consensus 747 --~~~~~~~~~~~~i~~-~~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~~es-~~~~~~~i~----~~~~~~~~~~~i~~ 818 (965)
...+++.++++.+++ .++..+++.+.++++.++.||++|++ +.+.+|| ++.+++.++ +++++++|+++++.
T Consensus 79 ~~~~~~~~~~~~~~i~~e~~~~~~~~~g~lt~e~l~~Lk~aG~~-~~~~~Et~~~~l~~~~~~~~~p~k~~~~~l~~i~~ 157 (322)
T TIGR03550 79 YDSTLEYLRELCELALEETGLLPHTNPGVMSRDELARLKPVNAS-MGLMLETTSERLCKGEAHYGSPGKDPAVRLETIED 157 (322)
T ss_pred CccHHHHHHHHHHHHHHhcCCccccCCCCCCHHHHHHHHhhCCC-CCcchhhhccccccccccCCCCCCCHHHHHHHHHH
Confidence 124788888888886 47788899999999999999999986 5888999 777665554 34578999999999
Q ss_pred HHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCC---CCCceeeccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q psy8199 819 VRNVGINICCGGIIGLSESRDQRAELIFQLANLNP---YPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPT 895 (965)
Q Consensus 819 ~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~---~~~~i~~~~~~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~ 895 (965)
++++|+++++++|+|+|||.+|+++++..++++++ ++..+++++|.|.||||+++.++.+..++++++|++|+++|+
T Consensus 158 a~~~Gi~~~s~~i~G~gEt~ed~~~~l~~lr~Lq~~~~g~~~~i~~~f~P~~gTpl~~~~~~s~~e~lr~iAv~Rl~l~~ 237 (322)
T TIGR03550 158 AGRLKIPFTTGILIGIGETREERAESLLAIRELHERYGHIQEVIVQNFRAKPGTPMENHPEPSLEEMLRTVAVARLILPP 237 (322)
T ss_pred HHHcCCCccceeeEeCCCCHHHHHHHHHHHHHHHHHcCCCeEEecCccccCCCCCccCCCCCCHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999985 356778899999999999998899999999999999999987
Q ss_pred CceeccccccccchhhHHHHhhcCccE-----EeeCCccccCC-CCCChhhHHHHHHcCCCcchhhh
Q psy8199 896 SRIRMSAGRKEMGETTQAFCFLAGANS-----IFYGDKLLTTD-NTKTNDDSKLLKKLGINTRNIKI 956 (965)
Q Consensus 896 ~~i~i~~~~~~~~~~~~~~~l~~Gan~-----~~~g~~~~t~~-~~~~~~~~~~~~~~g~~~~~~~~ 956 (965)
. ++|+++| .++...++.+|.+|||+ .+++++..+.+ ..+++++.++|+++|++|++|+.
T Consensus 238 ~-~~I~~~~-~l~~~~~~~~L~~Gand~~gt~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~p~~R~t 302 (322)
T TIGR03550 238 D-ISIQVPP-NLNREDYRLLLDAGIDDWGGVSPVTPDHVNPEAPWPEIDELARATEEAGFTLKERLP 302 (322)
T ss_pred C-CeeecCC-ccChHHHHHHHhcCCccccCcccCchhhcCCCCCCCCHHHHHHHHHHcCCCcccccC
Confidence 5 7999999 44454688999999998 45577554332 24789999999999999999875
|
This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria. |
| >COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-36 Score=325.03 Aligned_cols=319 Identities=17% Similarity=0.178 Sum_probs=264.1
Q ss_pred HHHHHHhhhc-ccccHHHHHHhcCC-CchhHHHHHHHHHHHhcC--CCeEEEeEeEeeccCCCCCCCCCCCCCCcCCCCc
Q psy8199 634 IQHMTSAIFQ-TFNELDEVINLFNL-PFNDLLFRAQKVHRKYFD--ANEIELAVLLSIKTGGCTEDCGYCPQSTHYNTEI 709 (965)
Q Consensus 634 i~~~~~~l~~-~~~~~~e~l~l~~~-~~~~l~~~a~~~~~~~~~--g~~~~~~~~i~~~s~~C~~~C~fC~~~~~~~~~~ 709 (965)
++.+++++.. ...+.++++.|++. +...+...|+++|++... +++|.++.+||+ ||.|.++|.||+|++..+ ..
T Consensus 8 ~~~~~e~a~~~~~l~~~d~~~Ll~~~~~~~l~~~A~~~r~~~~~~~~vtyv~n~~in~-TN~C~~~C~fCaF~~~~~-~~ 85 (370)
T COG1060 8 VDEIVEKALNGERLTREDALALLSPADLEELEELADKARRRKRVGDGVTYVVNRNINY-TNICVNDCTFCAFYRKPG-DP 85 (370)
T ss_pred HHHHHHHHhccCCCCHHHHHHHhccCcHHHHHHHHHHHHHhhccCCcEEEEEeecCCc-chhhcCCCCccccccCCC-Cc
Confidence 7777777764 56899999999975 467888999999845443 455788899999 999999999999998753 32
Q ss_pred ccccCCCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHhcCcEeEE-------------ecCCCCHH
Q psy8199 710 TATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCL-------------TLGMLNEN 776 (965)
Q Consensus 710 ~~~~~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~~~~i~~-------------~~~~~~~e 776 (965)
++|. +|+|||.++++++.+.|+++++|++|.+| ...++++.++++.||+..+.+++ ..+...+|
T Consensus 86 ~~y~-Ls~eeI~~~~~~~~~~G~~Evli~gG~~p--~~~~~y~~~~~~~ik~~~p~~~i~a~s~~ei~~~~~~~~~s~~E 162 (370)
T COG1060 86 KAYT-LSPEEILEEVREAVKRGITEVLIVGGEHP--ELSLEYYEELFRTIKEEFPDLHIHALSAGEILFLAREGGLSYEE 162 (370)
T ss_pred cccc-cCHHHHHHHHHHHHHcCCeEEEEecCcCC--CcchHHHHHHHHHHHHhCcchhhcccCHHHhHHHHhccCCCHHH
Confidence 4444 99999999999999999999999999988 55678999999999974444432 34566777
Q ss_pred HHHHHHHhCCCeEeccCCC-CHHHH-hcccC-CCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCC
Q psy8199 777 QAYRLKKVGLDYYNHNLDT-SPKLY-GDIIS-TRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNP 853 (965)
Q Consensus 777 ~l~~Lk~aG~~~i~i~~es-~~~~~-~~i~~-~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~ 853 (965)
++++||+||++.+..+..+ ..+.+ +.+++ +.+++.|+++++.|+++||+.++++++|++|+.+|+++++..++++|+
T Consensus 163 ~l~~Lk~aGldsmpg~~aeil~e~vr~~~~p~K~~~~~wle~~~~Ah~lGI~~tatml~Gh~E~~ed~~~hl~~ir~lQ~ 242 (370)
T COG1060 163 VLKRLKEAGLDSMPGGGAEILSEEVRKIHCPPKKSPEEWLEIHERAHRLGIPTTATMLLGHVETREDRIDHLEHIRDLQD 242 (370)
T ss_pred HHHHHHHcCCCcCcCcceeechHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCccceeEEEecCCHHHHHHHHHHHHHHHH
Confidence 7999999999999999888 54444 44554 458999999999999999999999999999999999999999999987
Q ss_pred ---CCCceeeccccccCCC-CCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEee---C
Q psy8199 854 ---YPESVPINNLVQIKGT-PLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFY---G 926 (965)
Q Consensus 854 ---~~~~i~~~~~~P~~gT-~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~---g 926 (965)
++..+.+.+|.|.+++ ++...++.+..++++++|++|+++++..-+++++|...+....+.++.+|||++-. +
T Consensus 243 ~~gg~~~fI~~~f~p~~~~~~~~~~~~~~~~~~l~~iAiaRi~l~~~i~~~~a~w~~~g~~~~~~~l~~GanD~ggt~~~ 322 (370)
T COG1060 243 ETGGFQEFIPLRFRPENGPLPAEVVPEASLEQDLKAIALARIFLDNNISNIQASWLRDGVILAQAALLSGANDLGGTGYE 322 (370)
T ss_pred HhCCcEEEEcccccCCCCCccccCCCCCCHHHHHHHHHHHHHHccCccccccCcccccchHHHHHHHHhCcccCcCCCcc
Confidence 4566666778888877 67777888999999999999999998766799999999988899999999997543 3
Q ss_pred CccccCCC------CCChhhHHHHHHcCCCcchhhhH
Q psy8199 927 DKLLTTDN------TKTNDDSKLLKKLGINTRNIKIK 957 (965)
Q Consensus 927 ~~~~t~~~------~~~~~~~~~~~~~g~~~~~~~~~ 957 (965)
|++....+ .++++..++++++|+.|+.|+.-
T Consensus 323 E~v~~~a~~~~~~~~~~eel~~~i~~aG~~p~~Rdt~ 359 (370)
T COG1060 323 EKVNPAAGAFSGDWRSVEELAALIKEAGRIPVERDTL 359 (370)
T ss_pred cccccccccccCCCCCHHHHHHHHHHcCCCeeeeccc
Confidence 44443333 46789999999999999998753
|
|
| >TIGR00423 radical SAM domain protein, CofH subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-36 Score=326.74 Aligned_cols=271 Identities=18% Similarity=0.303 Sum_probs=229.9
Q ss_pred eEEEeEeEeeccCCCCCCCCCCCCCCcCCCCcccccCCCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHH
Q psy8199 678 EIELAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMIC 757 (965)
Q Consensus 678 ~~~~~~~i~~~s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~ 757 (965)
+|..+..|++ ||+|+++|.||++++.++.. +.| .+++|+|+++++++.+.|+++|+|++|.++ ..+.++++++++
T Consensus 2 ~~~~n~~i~~-T~~C~~~C~FC~~~~~~~~~-~~~-~ls~eeI~~~~~~~~~~G~~~i~l~gg~~~--~~~~~~~~~i~~ 76 (309)
T TIGR00423 2 TFVVNRNINF-TNICVGKCKFCAFRAREKDK-DAY-VLSLEEILEKVKEAVAKGATEVCIQGGLNP--QLDIEYYEELFR 76 (309)
T ss_pred EEeceeeecC-ccccccCCccCCCccCCCCC-Ccc-cCCHHHHHHHHHHHHHCCCCEEEEecCCCC--CCCHHHHHHHHH
Confidence 4667788998 99999999999998754322 234 599999999999999999999999987655 356889999999
Q ss_pred HHHhcC--cEeEE-----------ecCCCCHHHHHHHHHhCCCeEe-ccCCC-CHHHHhcccCC-CCHHHHHHHHHHHHH
Q psy8199 758 EVKKIG--LETCL-----------TLGMLNENQAYRLKKVGLDYYN-HNLDT-SPKLYGDIIST-RDYENRLNTLKNVRN 821 (965)
Q Consensus 758 ~i~~~~--~~i~~-----------~~~~~~~e~l~~Lk~aG~~~i~-i~~es-~~~~~~~i~~~-~~~~~~~~~i~~~~~ 821 (965)
.|++.. +.++. +.|..+++.+++||+||++++. .+.|+ +++++++++++ .++++|+++++.+++
T Consensus 77 ~Ik~~~~~i~~~~~s~~e~~~~~~~~g~~~~e~l~~LkeAGl~~i~~~g~E~l~~~~~~~i~~~~~t~~~~l~~i~~a~~ 156 (309)
T TIGR00423 77 AIKQEFPDVHIHAFSPMEVYFLAKNEGLSIEEVLKRLKKAGLDSMPGTGAEILDDSVRRKICPNKLSSDEWLEVIKTAHR 156 (309)
T ss_pred HHHHHCCCceEEecCHHHHHHHHHHcCCCHHHHHHHHHHcCCCcCCCCcchhcCHHHHHhhCCCCCCHHHHHHHHHHHHH
Confidence 999854 44431 3566789999999999999996 69999 89999999875 499999999999999
Q ss_pred cCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccccc----cCCCC-CCCC--CCCCHHHHHHHHHHHHHHCC
Q psy8199 822 VGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQ----IKGTP-LYGS--SILDPLEFIRTIAVARITMP 894 (965)
Q Consensus 822 ~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P----~~gT~-l~~~--~~~~~~~~~~~ia~~R~~lp 894 (965)
+|+++++++|+|+|||.||+++++..+++++ .+...++.|+| .+||| ++.. +++++.+.+|++|++|+++|
T Consensus 157 ~Gi~~~s~~iiG~~Et~ed~~~~l~~lr~l~--~~~~~f~~fiP~~f~~~~t~~l~~~~~~~~~~~e~lr~iA~~Rl~lp 234 (309)
T TIGR00423 157 LGIPTTATMMFGHVENPEHRVEHLLRIRKIQ--EKTGGFTEFIPLPFQPENNPYLEGEVRKGASGIDDLKVIAISRILLN 234 (309)
T ss_pred cCCCceeeEEecCCCCHHHHHHHHHHHHhhc--hhhCCeeeEEeeeecCCCChhhccCCCCCCCHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999 67666666666 36899 8765 77899999999999999999
Q ss_pred CCceeccccccccchhhHHHHhhcCccE---EeeCCccccCC------CCCChhhHHHHHHcCCCcchhhh
Q psy8199 895 TSRIRMSAGRKEMGETTQAFCFLAGANS---IFYGDKLLTTD------NTKTNDDSKLLKKLGINTRNIKI 956 (965)
Q Consensus 895 ~~~i~i~~~~~~~~~~~~~~~l~~Gan~---~~~g~~~~t~~------~~~~~~~~~~~~~~g~~~~~~~~ 956 (965)
+ .++++++|..++.+.++.+|.+|||+ ++..|++.... ..++++..++++++|++|++|+.
T Consensus 235 ~-~~~i~a~~~~l~~~~~~~~l~~Gand~~gt~~~e~v~~~ag~~~~~~~~~~~l~~~~~~~g~~~~~r~~ 304 (309)
T TIGR00423 235 N-IRNIQASWVKLGLKLAQVALEFGANDLGGTLMEENISKAAGAKSGVGLTVEELIEAIKDAGRVPAQRDT 304 (309)
T ss_pred C-CccceecchhcCHHHHHHHHhCCCccCCcccccceeccccCCCCCCCCCHHHHHHHHHHcCCCeeecCC
Confidence 5 48899999999888889999999995 44557665443 33678999999999999999874
|
This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family. |
| >PRK06267 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=324.44 Aligned_cols=275 Identities=18% Similarity=0.296 Sum_probs=234.6
Q ss_pred CCchhHHHHHHHHHHHhcCCCeEEEeEeEeeccCCCC--CCCCCCCCCCcCCC-CcccccCCCHHHHHHHHHHHHHCCCC
Q psy8199 657 LPFNDLLFRAQKVHRKYFDANEIELAVLLSIKTGGCT--EDCGYCPQSTHYNT-EITATKILSIESVITAAQKAKSDGAT 733 (965)
Q Consensus 657 ~~~~~l~~~a~~~~~~~~~g~~~~~~~~i~~~s~~C~--~~C~fC~~~~~~~~-~~~~~~~~~~eei~~~~~~~~~~g~~ 733 (965)
.++.+|+..|+++|+++| |+++.+++++++ ||+|+ ++|.||+++...+. ....++.+++|+|+++++.+.+.|++
T Consensus 4 ~~~~~L~~~A~~ir~~~f-G~~v~l~~~l~~-S~~C~l~~~C~FC~~s~~~~~i~~~~~~~~s~eeI~eea~~~~~~Gv~ 81 (350)
T PRK06267 4 EEILENSIKAFKLTEKHH-GNIVSLERALFL-GWYCNLKGPCKFCYMSTQKDKIKDPLKARRRVESILAEAILMKRIGWK 81 (350)
T ss_pred hHHHHHHHHHHHHHHHHc-CCeEEEEEeeee-cCCCcCCCCCcCCCCcccCCccCccccccCCHHHHHHHHHHHHHcCCC
Confidence 357889999999988888 899999999998 99999 99999999875321 12245568999999999999999999
Q ss_pred EEEEeeccCCCCcccHHHHHHHHHHHHhcCcEeEEecCCCCHHHHHHHHHhCCCeEeccCCC-CHHHHhcccCCCCHHHH
Q psy8199 734 RFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENR 812 (965)
Q Consensus 734 ~i~l~~g~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~~es-~~~~~~~i~~~~~~~~~ 812 (965)
.+++++|. ++...+++.+++.++.++ +..++++.|.++.+.+..++.+|+ ..++|| +++.++.+++.++++++
T Consensus 82 ~~~lsgG~-~~~~~el~~i~e~I~~~~--~~~~~~s~G~~d~~~~~~~~l~Gv---~g~~ET~~~~~~~~i~~~~s~ed~ 155 (350)
T PRK06267 82 LEFISGGY-GYTTEEINDIAEMIAYIQ--GCKQYLNVGIIDFLNINLNEIEGV---VGAVETVNPKLHREICPGKPLDKI 155 (350)
T ss_pred EEEEecCC-CCCHHHHHHHHHHHHHhh--CCceEeecccCCHHHHhhccccCc---eeeeecCCHHHHHhhCCCCCHHHH
Confidence 77777664 444444455555554443 446788899999998888888876 468999 89999999999999999
Q ss_pred HHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCCCCCCCHHHHHHHHHHHHHH
Q psy8199 813 LNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARIT 892 (965)
Q Consensus 813 ~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~~~~~~~~~~~~~ia~~R~~ 892 (965)
+++++.++++|+++++++|+|+||+.+|+.++++++++++ ++.+++++|+|.||||+++.++++++++++++|++|++
T Consensus 156 ~~~l~~ak~aGi~v~~g~IiGlgEt~ed~~~~l~~l~~l~--~d~v~~~~L~P~pGTp~~~~~~~s~~e~lr~ia~~Rl~ 233 (350)
T PRK06267 156 KEMLLKAKDLGLKTGITIILGLGETEDDIEKLLNLIEELD--LDRITFYSLNPQKGTIFENKPSVTTLEYMNWVSSVRLN 233 (350)
T ss_pred HHHHHHHHHcCCeeeeeEEEeCCCCHHHHHHHHHHHHHcC--CCEEEEEeeeECCCCcCCCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred CCCCceeccccccccchhhHHHHhhcCccEE----eeCCccccCCCCCChhhHHHH
Q psy8199 893 MPTSRIRMSAGRKEMGETTQAFCFLAGANSI----FYGDKLLTTDNTKTNDDSKLL 944 (965)
Q Consensus 893 lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~----~~g~~~~t~~~~~~~~~~~~~ 944 (965)
+|+..| ++++|.....+.++ ++.+|||++ +.|+ |+|+.|+++++|+.+-
T Consensus 234 lP~~~I-~~~~~~~~l~~~~~-~~~aGaN~i~~~p~~g~-ylt~~g~~~~~~~~~~ 286 (350)
T PRK06267 234 FPKIKI-ITGTWVDKLTNIGP-LIMSGSNVITKFPLFSM-YGTKEGKRVENEIRWT 286 (350)
T ss_pred CCCCCc-chhhHhHhcchhhH-HhhcCcceeeccchhcc-CcccCCCCHHHHHHHh
Confidence 999988 78888655566666 577999999 7888 5688888899888765
|
|
| >cd02869 PseudoU_synth_RluCD_like PseudoU_synth_RsuA/RluD: Pseudouridine synthase, RsuA/RluD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-34 Score=286.67 Aligned_cols=184 Identities=45% Similarity=0.676 Sum_probs=145.7
Q ss_pred EEEEECCCCCeeeeCCCCCcccHHHHHHHHCCcccCCCCccccccCCCCCceEEEeEeCHHHHHHHHHHHHcCCcCeEEE
Q psy8199 38 IIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYL 117 (965)
Q Consensus 38 ~lv~nKP~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~RLD~~tsGlll~a~~~~~~~~l~~~~~~~~~~K~Y~ 117 (965)
|+|+|||+|++|++.......++.+.+............+.+|||||++||||||||+|+++++.|+++|+++.+.|+|+
T Consensus 1 ~lvvnKP~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~RLD~~tsGlll~ak~~~~~~~l~~~~~~~~~~K~Y~ 80 (185)
T cd02869 1 LLVVNKPAGLPVHPGPGHLTGTLVNALLKLLLLLGEEFRPGLVHRLDKDTSGLLLVAKNKKAAAKLSKQFKERKVKKTYL 80 (185)
T ss_pred CEEEECCCCCeeecCCCCCCCCHHHHHHHHHhhcCCCCcCceecccCCCCceEEEEEcCHHHHHHHHHHHhcCceeEEEE
Confidence 68999999999999887666777776532222222345789999999999999999999999999999999999999999
Q ss_pred EEEcCccCCC-ceEeeccccCCCCCeeEEEccCCCCcceEEEEEEeEEeeccCCcEEEEEEEeCCCcccHHHHHHHHhCC
Q psy8199 118 AMVWGIPKLN-GMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGH 196 (965)
Q Consensus 118 a~v~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~s~~~~~~~tGr~hQIR~~~~~~g~ 196 (965)
|+|.|.+..+ +.+..++..+.......... ..+++.+.|+|+++... .++|+++|+|.|||+||||+||+++||
T Consensus 81 a~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~t~~~~l~~~----~~~s~~~~~l~tGR~HQIR~hl~~~G~ 155 (185)
T cd02869 81 ALVDGKPPEDEGTIDAPLGRKKRKKRARVVV-SEDGKPAITHYKVLERF----GNVTLVELQLETGRTHQIRVHLASIGH 155 (185)
T ss_pred EEEeCCCCCCccEEecccccCCccCceEEEE-CCCCeEEEEEEEEEEEc----CCcEEEEEEeCcCCccHHHHHHHHCCC
Confidence 9999998754 56665665432222222222 24689999999999874 578999999999999999999999999
Q ss_pred ceecCCCCCccccccccccccccccccccc
Q psy8199 197 GIVGDNLYGKKYSKSLIFNRQALHAYKLGL 226 (965)
Q Consensus 197 pi~gD~~~~~~~~~~~~~~~~~Lha~~l~f 226 (965)
||+||.+||..........+++||++++.|
T Consensus 156 pIvGD~~Yg~~~~~~~~~~~~~Lha~~l~~ 185 (185)
T cd02869 156 PIVGDPKYGGKASDSPGLKRLALHAYRLSF 185 (185)
T ss_pred CEeCccccCCccccccCCcchhhcccEeEC
Confidence 999999999764322123678999998876
|
This group is comprised of eukaryotic, bacterial and archeal proteins similar to eight site specific Escherichia coli pseudouridine synthases: RsuA, RluA, RluB, RluC, RluD, RluE, RluF and TruA. Pseudouridine synthases catalyze the isomerization of specific uridines in a n RNA molecule to pseudouridines (5-ribosyluracil, psi) requiring no cofactors. E. coli RluC for example makes psi955, 2504 and 2580 in 23S RNA. Some psi sites such as psi1917 in 23S RNA made by RluD are universally conserved. Other psi sites occur in a more restricted fashion, for example psi2819 in 21S mitochondrial ribosomal RNA made by S. cerevisiae Pus5p is only found in mitochondrial large subunit rRNAs from some other species and in gram negative bacteria. The E. coli counterpart of this psi residue is psi2580 in 23S rRNA. psi2604in 23S RNA made by RluF has only been detected in E.coli. |
| >PRK07505 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-32 Score=311.15 Aligned_cols=337 Identities=16% Similarity=0.129 Sum_probs=238.5
Q ss_pred eEEEecCCcccccccccchhccCC-CCCHHHHHHHHHHHhhcc--c-cc-cCCCCcHHHHHHHHHHHhhcCCCCCeEEEc
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFG-HSNSYINKALKNQLNKLE--H-VM-LSNLTHKPVIKLSEKLSSLTQYKLGHCFYG 320 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lG-h~~p~v~~av~~~~~~~~--~-~~-~~~~~~~~~~~la~~l~~~~~~~~~~v~~~ 320 (965)
+|+||.||++||||.+ +.++| |+||+|++|+++|+++.+ + .. .....++...+++++|++.++. +++++
T Consensus 38 ~~~~d~~g~~~ld~~s---~~~lgl~~~p~v~~A~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~la~~~~~---~~~~~ 111 (402)
T PRK07505 38 ILITLADGHTFVNFVS---CSYLGLDTHPAIIEGAVDALKRTGSLHLSSSRTRVRSQILKDLEEALSELFGA---SVLTF 111 (402)
T ss_pred ccEEecCCceEEEeec---CCccCCCCCHHHHHHHHHHHHHhCCCCCCccchhhhhHHHHHHHHHHHHHhCC---CEEEE
Confidence 8999999999999988 36899 999999999999998753 1 11 1124577889999999999863 77778
Q ss_pred CChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCCh
Q psy8199 321 SDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSA 400 (965)
Q Consensus 321 ~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (965)
+||++|++.|+++++... .+ .++.++|+++++|||+..... .+... ..++.++|.
T Consensus 112 ~sG~~a~~~ai~~~~~~~-~~--~~~~~vi~~~~~~H~s~~~~~------~~~~~----~~~v~~~~~------------ 166 (402)
T PRK07505 112 TSCSAAHLGILPLLASGH-LT--GGVPPHMVFDKNAHASLNILK------GICAD----ETEVETIDH------------ 166 (402)
T ss_pred CChHHHHHHHHHHHHhcc-cC--CCCCCEEEEchhhhHhHHhhh------hhhhc----CCeEEEeCC------------
Confidence 899999999999876421 01 145679999999999531110 11110 124455554
Q ss_pred hHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccc--cCCCccccccccc
Q psy8199 401 NEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIA--VGCGRTGKFFACE 478 (965)
Q Consensus 401 ~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~--tg~gr~G~~~~~~ 478 (965)
+|+++|++++.+ ...++|++|| ++ ++|.+.+ +++|+++|++||++||+||+| +|+|++|.+++.+
T Consensus 167 -----~d~~~l~~~~~~--~~~~~vl~~p-~~-~~G~~~~----~~~i~~l~~~~~~~li~DEa~~~~~~g~~g~~~~~~ 233 (402)
T PRK07505 167 -----NDLDALEDICKT--NKTVAYVADG-VY-SMGGIAP----VKELLRLQEKYGLFLYIDDAHGLSIYGKNGEGYVRS 233 (402)
T ss_pred -----CCHHHHHHHHhc--CCCEEEEEec-cc-ccCCcCC----HHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHH
Confidence 377888888863 3478999999 65 5566666 899999999999999999998 6789999877778
Q ss_pred ccCC-Cccee----eeccccCCCcccceeee-ecHHHHHhhhccCCcccccccCCCCCC--HHHHHHHHHHHHHHhcccH
Q psy8199 479 HAEI-WPDFL----CLSKGITGGYLPLSLVM-TTDKIYNSIYYKNNINIFLHSHSYSGN--PLACCAALATLEIFNKDNI 550 (965)
Q Consensus 479 ~~~~-~pDiv----t~sK~l~gG~~pig~v~-~~~~i~~~~~~~~~~~~~~~~~t~~~~--~~~~aaa~a~L~~~~~~~~ 550 (965)
+++. .||.+ |+||++++++ |+++ .++++++.+.. +.+..||+++ ++++++++++|+.+.++.+
T Consensus 234 ~~~~~~~d~~i~~~s~sK~~~~~G---g~~~~~~~~~~~~~~~------~~~~~t~~~~~~~~a~aa~~a~l~~~~~~~~ 304 (402)
T PRK07505 234 ELDYRLNERTIIAASLGKAFGASG---GVIMLGDAEQIELILR------YAGPLAFSQSLNVAALGAILASAEIHLSEEL 304 (402)
T ss_pred HcCCCCCCCeEEEEechhhhhccC---eEEEeCCHHHHHHHHH------hCCCceeCCCCCHHHHHHHHHHHHHHhccCc
Confidence 8887 67754 7999987642 5555 47788887765 3455667655 5899999999987665544
Q ss_pred HHHHHHHHHHHHHHHHcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec-------C-CEEE
Q psy8199 551 LQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-------G-NTVY 622 (965)
Q Consensus 551 ~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-------~-~~lR 622 (965)
.+... ++++.++.+... ....+++.++++..... .+ ...+..+.+.|.++||++++. + +++|
T Consensus 305 ~~~~~----~l~~~~~~~~~~-~~~~~~g~~~~i~~~~~-~~----~~~~~~~~~~l~~~Gi~v~~~~~p~~~~~~~~lR 374 (402)
T PRK07505 305 DQLQQ----KLQNNIALFDSL-IPTEQSGSFLPIRLIYI-GD----EDTAIKAAKQLLDRGFYTSPVFFPVVAKGRAGLR 374 (402)
T ss_pred HHHHH----HHHHHHHHHHHH-HHhcCCCCCCCEEEEEe-CC----HHHHHHHHHHHHHCCCeEeeecCCCCCCCCceEE
Confidence 43322 233333222110 01123555555433221 11 122456888999999999863 2 5899
Q ss_pred EeCCcccCHHHHHHHHHhhhccc
Q psy8199 623 LMPPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 623 ~~p~~~~t~~~i~~~~~~l~~~~ 645 (965)
|+|++.+++++++++++++.+.+
T Consensus 375 i~~~~~~t~eei~~~~~~l~~~l 397 (402)
T PRK07505 375 IMFRASHTNDEIKRLCSLLKEIL 397 (402)
T ss_pred EecCccCCHHHHHHHHHHHHHHH
Confidence 99999999999999999987643
|
|
| >PRK06245 cofG FO synthase subunit 1; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-32 Score=296.43 Aligned_cols=273 Identities=22% Similarity=0.324 Sum_probs=224.7
Q ss_pred CCe--EEEeEeEeeccCCCCCCCCCCCCCCcCCCCcccccCCCHHHHHHHHHHHHHCCCCEEEEeeccCCCCccc-----
Q psy8199 676 ANE--IELAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRD----- 748 (965)
Q Consensus 676 g~~--~~~~~~i~~~s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~----- 748 (965)
|+. +..+..+++ ||+|+.+|.||++++..+. .+.+++|+|+++++++.+.|+++++|++|..+....+
T Consensus 5 ~~~vt~~~~~~i~~-Tn~C~~~C~fC~~~~~~~~----~~~ls~eei~~~~~~~~~~G~~ei~l~gG~~p~~~~~~~~~~ 79 (336)
T PRK06245 5 SKIVTYSRNVFIPL-TYECRNRCGYCTFRRDPGQ----PSLLSPEEVKEILRRGADAGCTEALFTFGEVPDESYERIKEQ 79 (336)
T ss_pred CCeeEeecceeeec-cccccCCCccCCCcCCCCc----cCcCCHHHHHHHHHHHHHCCCCEEEEecCCCCccchhhhhhh
Confidence 544 455688899 9999999999998864322 2368999999999999999999999999987533311
Q ss_pred -----HHHHHHHHHHHH----hcCcEeEEecCCCCHHHHHHHHHhCCCeEeccCCC-CHHHHhcc---cCCCCHHHHHHH
Q psy8199 749 -----LDNIENMICEVK----KIGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDI---ISTRDYENRLNT 815 (965)
Q Consensus 749 -----~~~~~~~~~~i~----~~~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~~es-~~~~~~~i---~~~~~~~~~~~~ 815 (965)
...+.+.++++. +.++..+++++.++++.++.|+++|++ +.+.+|| ++.+++.+ ++.+++++++++
T Consensus 80 ~~~~g~~~~~~~i~~i~~~~~~~g~~~~~~~~~lt~e~i~~Lk~ag~~-l~~~~et~~e~l~~~v~~~~~~~~~~~~l~~ 158 (336)
T PRK06245 80 LAEMGYSSILEYLYDLCELALEEGLLPHTNAGILTREEMEKLKEVNAS-MGLMLEQTSPRLLNTVHRGSPGKDPELRLET 158 (336)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhcCCCccccCCCCCHHHHHHHHHhCCC-CCCCccccchhhHHhhccCCCCCCHHHHHHH
Confidence 133445554443 345666789999999999999999865 5777899 88888555 667789999999
Q ss_pred HHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCC---CCCceeeccccccCCCCCCCCCCCCHHHHHHHHHHHHHH
Q psy8199 816 LKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNP---YPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARIT 892 (965)
Q Consensus 816 i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~---~~~~i~~~~~~P~~gT~l~~~~~~~~~~~~~~ia~~R~~ 892 (965)
++.++++|+++++++|+|++||.+|+.++++.+++++. ++..+++++|+|.+|||+...++++.++++++++++|++
T Consensus 159 i~~a~~~Gi~~~~~~i~G~gEt~ed~~~~l~~l~~l~~~~gg~~~~~~~~f~P~~~T~~~~~~~~s~~e~l~~ia~~Rl~ 238 (336)
T PRK06245 159 IENAGKLKIPFTTGILIGIGETWEDRAESLEAIAELHERYGHIQEVIIQNFSPKPGIPMENHPEPSLEEMLRVVALARLI 238 (336)
T ss_pred HHHHHHcCCceeeeeeeECCCCHHHHHHHHHHHHHHHHhhCCCcEEecCCCcCCCCCCcccCCCcCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999974 257788999999999999888888999999999999999
Q ss_pred CCCCceeccccccccchhhHHHHhhcCccEE-----eeCCccccCC-CCCChhhHHHHHHcCCCcchhhh
Q psy8199 893 MPTSRIRMSAGRKEMGETTQAFCFLAGANSI-----FYGDKLLTTD-NTKTNDDSKLLKKLGINTRNIKI 956 (965)
Q Consensus 893 lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~-----~~g~~~~t~~-~~~~~~~~~~~~~~g~~~~~~~~ 956 (965)
+|+. ++++++| .++.+.++.+|.+|||++ ..|+++.+.. +.+++++.++++++|++|++|+.
T Consensus 239 l~~~-i~i~~~~-~~~~~~~~~~L~~Gand~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~r~~ 306 (336)
T PRK06245 239 LPPD-ISIQVPP-NLNRDTGLLLLDAGADDLGGISPVTKDYVNPEYPWPDIEELREILEEAGWPLKERLP 306 (336)
T ss_pred CCCC-ceEecCC-ccchHHHHHHHhcCCccccCCccCCCceeCCCCCCCCHHHHHHHHHHcCCCcccccC
Confidence 9874 7889887 667777888999999987 5567543321 44789999999999999999875
|
|
| >PLN02822 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-30 Score=298.03 Aligned_cols=339 Identities=13% Similarity=0.158 Sum_probs=249.7
Q ss_pred eEEEecCCcccccccccchhccCCC-CCHHHHHHHHHHHhhcccc-cc---CCCCcHHHHHHHHHHHhhcCCCCCeEEEc
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGH-SNSYINKALKNQLNKLEHV-ML---SNLTHKPVIKLSEKLSSLTQYKLGHCFYG 320 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh-~~p~v~~av~~~~~~~~~~-~~---~~~~~~~~~~la~~l~~~~~~~~~~v~~~ 320 (965)
+|++ .||++|+||.++.+ +|. +||+|.+|+.+++++++.. +. .+++++...+|+++|++.++ ..+.++|+
T Consensus 102 ~~i~-~~G~~~id~~s~~~---lgl~~~~~i~ea~~~al~~~G~g~~g~r~~yg~~~~~~~Lee~La~~~~-~~~~i~~s 176 (481)
T PLN02822 102 PHTI-INGKDVVNFASANY---LGLIGNEKIKESCTSALEKYGVGSCGPRGFYGTIDVHLDCETKIAKFLG-TPDSILYS 176 (481)
T ss_pred CeEE-ECCceEEEeECCCc---CCCCCCHHHHHHHHHHHHHhCCCCcccCccccCHHHHHHHHHHHHHHhC-CCCEEEEC
Confidence 7888 89999999988754 444 4999999999999985432 21 24678889999999999997 45678888
Q ss_pred CChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCCh
Q psy8199 321 SDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSA 400 (965)
Q Consensus 321 ~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (965)
+|++ ++.++++.. .++..+|++++.||++...++.+++. .+++++.
T Consensus 177 ~G~~-a~~sai~a~---------~~~gd~Ii~d~~~H~s~~~~~~ls~~------------~~~~~~~------------ 222 (481)
T PLN02822 177 YGLS-TIFSVIPAF---------CKKGDIIVADEGVHWGIQNGLYLSRS------------TIVYFKH------------ 222 (481)
T ss_pred CHHH-HHHHHHHHh---------CCCCCEEEEeCCccHHHHHHHHHcCC------------eEEEECC------------
Confidence 6655 788888755 35667777999999887665555541 2333333
Q ss_pred hHHHHHHHHHHHHHHHhC------CCcE-EEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEecccc--CCCcc
Q psy8199 401 NEIARCAIFDLEILLKKN------HNKI-AAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAV--GCGRT 471 (965)
Q Consensus 401 ~~~~~~d~~~le~~l~~~------~~~~-aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t--g~gr~ 471 (965)
+|.++++..+++. .+++ ++|++|+ +++++|.+.| |++|+++|++||+++|+||+|+ .+|++
T Consensus 223 -----nd~~~l~~~l~~~~~~~~~~~~~~~~Ivve~-i~~~~G~i~~----L~~i~~l~~k~~~~LIvDEa~s~gvlG~~ 292 (481)
T PLN02822 223 -----NDMESLRNTLEKLTAENKRKKKLRRYIVVEA-IYQNSGQIAP----LDEIVRLKEKYRFRVLLDESNSFGVLGKS 292 (481)
T ss_pred -----CCHHHHHHHHHHHhhhhcccCCCcEEEEEec-CCCCCCCccC----HHHHHHHHHHcCCEEEEECCccccccCCC
Confidence 2444455444321 1234 8999999 9999999988 9999999999999999999998 45666
Q ss_pred cccccccccCC---Ccceee--eccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCC--HHHHHHHHHHHHH
Q psy8199 472 GKFFACEHAEI---WPDFLC--LSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGN--PLACCAALATLEI 544 (965)
Q Consensus 472 G~~~~~~~~~~---~pDivt--~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~--~~~~aaa~a~L~~ 544 (965)
|.+ .++++++ .||+++ |||+++.. -|++++++++++.+.. ..++++|+++ |..++|++++|+.
T Consensus 293 G~G-~~e~~~v~~~~~dii~~s~sKalg~~---GG~i~g~~~ii~~~~~------~~~~~~fsa~lPp~~~~Aa~~aL~~ 362 (481)
T PLN02822 293 GRG-LSEHFGVPIEKIDIITAAMGHALATE---GGFCTGSARVVDHQRL------SSSGYVFSASLPPYLASAAITAIDV 362 (481)
T ss_pred CCC-hHHHcCCCCCCCeEEEecchhhhhhC---CeEEEcCHHHHHHHHh------cCCceeeccccCHHHHHHHHHHHHH
Confidence 655 5788888 689987 78998731 1578899999998764 3467788876 8899999999998
Q ss_pred Hhc-ccHHHHHHHHHHHHHHHHHcccCCCceeee-eceeEEEEEEEeecCcc--chhhHHHHHHHHHH-HcCcEEeec--
Q psy8199 545 FNK-DNILQRISQDMKKITKALTSLITHPKIINF-RQKGMIWAFDVIIEDPE--QIETFSKKFFVAAL-KNELLLRPI-- 617 (965)
Q Consensus 545 ~~~-~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v-~g~G~~~~i~~~~~~~~--~~~~~~~~~~~~l~-~~Gi~~~~~-- 617 (965)
+++ ++..++++++++++++.|+++. ++... .+.+.++.+.+...... ........+++.|+ ++||++.+.
T Consensus 363 l~~~~~~~~~l~~~~~~l~~~L~~~~---g~~~~~~~~spi~~l~l~~~~~~~~~~~~~~~~~~~~Ll~e~GV~v~~~~~ 439 (481)
T PLN02822 363 LEDNPSVLAKLKENIALLHKGLSDIP---GLSIGSNTLSPIVFLHLEKSTGSAKEDLSLLEHIADRMLKEDSVLVVVSKR 439 (481)
T ss_pred HHhCHHHHHHHHHHHHHHHHHHHhcC---CcccCCCCCCCEEEEEeCCCcccccchHHHHHHHHHHHHhcCCEEEEeeCC
Confidence 765 5688999999999999998752 33322 24455666666411000 01123456888887 889999864
Q ss_pred --------CCEEEEeCCcccCHHHHHHHHHhhhcccc
Q psy8199 618 --------GNTVYLMPPYILNKNEIQHMTSAIFQTFN 646 (965)
Q Consensus 618 --------~~~lR~~p~~~~t~~~i~~~~~~l~~~~~ 646 (965)
...+|++.+..+++++|+++++++.++..
T Consensus 440 ~~~~~~~~~~~lRi~is~~~t~edI~~~~~~l~~~~~ 476 (481)
T PLN02822 440 STLDKCRLPVGIRLFVSAGHTESDILKASESLKRVAA 476 (481)
T ss_pred CCcCCCCCCCcEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 13699998899999999999999876543
|
|
| >PRK13393 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-29 Score=286.95 Aligned_cols=330 Identities=15% Similarity=0.141 Sum_probs=245.8
Q ss_pred CCcccccccccchhccCCC-CCHHHHHHHHHHHhhccccc----cCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHH
Q psy8199 252 SGKRYLDAISSWWVNLFGH-SNSYINKALKNQLNKLEHVM----LSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASA 326 (965)
Q Consensus 252 dG~~ylD~~~~~~~~~lGh-~~p~v~~av~~~~~~~~~~~----~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA 326 (965)
+|+++++|.++ .+||. +||+|++|+.+++++.++.. ...+.++...+|+++|+++++ .++++|++||++|
T Consensus 43 ~~~~~~~~~sn---~ylgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la~~~g--~~~~~~~~SG~~A 117 (406)
T PRK13393 43 GPREVTVWCSN---DYLGMGQHPAVLAAMHEALDTCGAGAGGTRNISGTNHYHVLLEAELADLHG--KEAALLFTSGYVS 117 (406)
T ss_pred CCccEEEeecc---cccCCCCCHHHHHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHhC--CCcEEEeCCcHHH
Confidence 46899999886 67998 59999999999998864321 122445678999999999996 4789999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHH
Q psy8199 327 VEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARC 406 (965)
Q Consensus 327 ~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (965)
|+.|++..... .++.+|+++..||+++..++...+. ....++. +
T Consensus 118 n~~ai~~l~~~-------~~g~~I~~~~~~H~s~~~~~~~~g~------------~~~~~~~-----------------~ 161 (406)
T PRK13393 118 NWAALSTLGSR-------LPGCVILSDELNHASMIEGIRHSRA------------EKRIFRH-----------------N 161 (406)
T ss_pred HHHHHHHhhcC-------CCCCEEEEccchhHHHHHHHHHcCC------------eEEEeCC-----------------C
Confidence 99999954221 1345888899999998766654431 1222332 3
Q ss_pred HHHHHHHHHHhC-CCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEecccc-CC-CcccccccccccCCC
Q psy8199 407 AIFDLEILLKKN-HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAV-GC-GRTGKFFACEHAEIW 483 (965)
Q Consensus 407 d~~~le~~l~~~-~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-g~-gr~G~~~~~~~~~~~ 483 (965)
|++++++.++.. ++++++|++|+ +++++|.+.| +++|+++|++||+++|+||+|+ |+ |++|..+ .++.++.
T Consensus 162 d~~~l~~~l~~~~~~~~~~v~~~~-v~~~~G~~~~----l~~i~~l~~~~~~~livDea~~~g~~g~~G~g~-~~~~~~~ 235 (406)
T PRK13393 162 DPADLERKLSDLDPHRPKLVAFES-VYSMDGDIAP----IAEICDVAEKHGAMTYLDEVHAVGLYGPRGGGI-AEREGLA 235 (406)
T ss_pred CHHHHHHHHHhccCCCCEEEEEcC-CCCCCCchhC----HHHHHHHHHHcCCEEEEECCccccccCCCCCch-hhhcCCC
Confidence 566777777643 23578999999 9999999988 9999999999999999999997 66 7777654 3666664
Q ss_pred --ccee--eeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhccc-HHHHHHHHH
Q psy8199 484 --PDFL--CLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDN-ILQRISQDM 558 (965)
Q Consensus 484 --pDiv--t~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~-~~~~~~~~~ 558 (965)
+|++ ||||+++. +-|++++++++++.+... ..+ +..|++.+|++++++.++|+.+++.. ..+++++++
T Consensus 236 ~~~~i~~~tlsKa~g~---~GG~~~~~~~~~~~l~~~--~~~--~~~t~~~~p~~~aa~~aaL~~~~~~~~~~~~~~~~~ 308 (406)
T PRK13393 236 DRLTIIEGTLAKAFGV---MGGYITGSAALCDFIRSF--ASG--FIFTTSLPPAVAAGALASVRHLKASSAERERHQDRV 308 (406)
T ss_pred CCCeEEEEeCchhhcc---cCceeeCCHHHHHHHHHh--CcC--ceecCccCHHHHHHHHHHHHHHhhCHHHHHHHHHHH
Confidence 5777 89999874 115678889988887651 111 12466789999999999999876442 345567888
Q ss_pred HHHHHHHHcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHH-cCcEEeec-------C-CEEEEeCCccc
Q psy8199 559 KKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALK-NELLLRPI-------G-NTVYLMPPYIL 629 (965)
Q Consensus 559 ~~l~~~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~-~Gi~~~~~-------~-~~lR~~p~~~~ 629 (965)
+++++.|+++ ++..+++.|.|+.+.+. + ...+..+.+.|++ +||++.+. + +.+||+|++.+
T Consensus 309 ~~l~~~L~~~----g~~~~~~~~~i~~v~~~--~----~~~~~~l~~~L~~~~Gi~v~~~~~p~~p~g~~~iRis~~~~~ 378 (406)
T PRK13393 309 ARLRARLDKA----GIPHLPNPSHIVPVMVG--D----PVLCKQISDELLDRYGIYVQPINYPTVPRGTERLRITPSPLH 378 (406)
T ss_pred HHHHHHHHHc----CCCcCCCCCCeEEEEeC--C----HHHHHHHHHHHHHhCCEEEEeECCCCCCCCCceEEEEECCCC
Confidence 8999998765 23345678888877553 2 1224567788887 59998752 2 68999999999
Q ss_pred CHHHHHHHHHhhhccc
Q psy8199 630 NKNEIQHMTSAIFQTF 645 (965)
Q Consensus 630 t~~~i~~~~~~l~~~~ 645 (965)
++++++++++++.+..
T Consensus 379 t~edid~l~~~l~~~~ 394 (406)
T PRK13393 379 TDADIEHLVQALSEIW 394 (406)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999999887654
|
|
| >cd02550 PseudoU_synth_Rsu_Rlu_like PseudoU_synth_Rsu_Rlu: Pseudouridine synthase, Rsu/Rlu family | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-30 Score=252.45 Aligned_cols=148 Identities=30% Similarity=0.415 Sum_probs=120.5
Q ss_pred EEEEECCCCCeeeeCCCCCcccHHHHHHHHCCcccCCCCccccccCCCCCceEEEeEeCHHHHHHHHHHHHcCCcCeEEE
Q psy8199 38 IIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYL 117 (965)
Q Consensus 38 ~lv~nKP~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~RLD~~tsGlll~a~~~~~~~~l~~~~~~~~~~K~Y~ 117 (965)
|+|+|||+|++|+++++....++.+.+.... .+++++|||||++||||||||||++++++|+++ +++++|+|+
T Consensus 1 ~ivvnKP~G~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~vhRLD~~TSGlll~ak~~~~~~~l~~~--~~~v~K~Y~ 73 (154)
T cd02550 1 ILVLNKPSGLVCHPTDRDRDPTVVVRLDKLH-----GPRVHAAGRLDKDTSGLLLLTNDGRLQRRLTEP--RREIEKEYL 73 (154)
T ss_pred CEEEECCCCCEEecCCCCCCCcHHHhhhccc-----CCceeEeccCCCCCeeEEEEEcCHHHHHHHhhh--hccCcEEEE
Confidence 6899999999999987765667777664332 246889999999999999999999999999996 888999999
Q ss_pred EEEcCccCCCceEeeccccCCCCCeeEEEccCCCCcceEEEEEEeEEeeccCCcEEEEEEEeCCCcccHHHHHHHHhCCc
Q psy8199 118 AMVWGIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHG 197 (965)
Q Consensus 118 a~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~s~~~~~~~tGr~hQIR~~~~~~g~p 197 (965)
|+|.|.+++++.+..++.. ......... .+++.+.|.|+++... .++++++++|.|||+||||+||+++|||
T Consensus 74 a~v~g~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~t~~~~l~~~----~~~sll~~~l~tGR~HQIR~hla~~G~p 145 (154)
T cd02550 74 VTVRGELDEEGIEDLATVR--RGRLSGLVD--EGVPLAVTKVRVIGEH----GGTGRLRLTLKTGRTHQIRRHCAAVGFP 145 (154)
T ss_pred EEEEeecCcchheeccccc--cCcceeEEc--CCCcccceEEEEEEec----CCcEEEEEEEcCCCcHHHHHHHHHcCCc
Confidence 9999998876665555443 111122222 3678899999999764 5679999999999999999999999999
Q ss_pred eec
Q psy8199 198 IVG 200 (965)
Q Consensus 198 i~g 200 (965)
|+-
T Consensus 146 I~~ 148 (154)
T cd02550 146 VLR 148 (154)
T ss_pred EEe
Confidence 973
|
This group is comprised of eukaryotic, bacterial and archeal proteins similar to eight site specific Escherichia coli pseudouridine synthases: RsuA, RluA, RluB, RluC, RluD, RluE, RluF and TruA. Pseudouridine synthases catalyze the isomerization of specific uridines in a n RNA molecule to pseudouridines (5-ribosyluracil, psi) requiring no cofactors. E. coli RluC for example makes psi955, 2504 and 2580 in 23S RNA. Some psi sites such as psi1917 in 23S RNA made by RluD are universally conserved. Other psi sites occur in a more restricted fashion, for example psi2819 in 21S mitochondrial ribosomal RNA made by S. cerevisiae Pus5p is only found in mitochondrial large subunit rRNAs from some other species and in gram negative bacteria. The E. coli counterpart of this psi residue is psi2580 in 23S rRNA. psi2604in 23S RNA made by RluF has only been detected in E.coli. |
| >TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.7e-28 Score=277.05 Aligned_cols=331 Identities=18% Similarity=0.213 Sum_probs=242.6
Q ss_pred cCCcccccccccchhccCCCC-CHHHHHHHHHHHhhcccccc----CCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhH
Q psy8199 251 FSGKRYLDAISSWWVNLFGHS-NSYINKALKNQLNKLEHVML----SNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGAS 325 (965)
Q Consensus 251 ~dG~~ylD~~~~~~~~~lGh~-~p~v~~av~~~~~~~~~~~~----~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGse 325 (965)
.+|+++++|.|+ .+||.+ ||+|++|+.+++++.+..+. ..+.++...+|+++++++++ .+.+++++||++
T Consensus 42 ~~~~~~~~~~sn---~ylgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~Le~~la~~~g--~~~~l~~~sG~~ 116 (402)
T TIGR01821 42 DGAKDVTVWCSN---DYLGMGQHPEVLQAMHETLDKYGAGAGGTRNISGTNIPHVELEAELADLHG--KESALVFTSGYV 116 (402)
T ss_pred CCCeeEEEeEcc---CcCCCCCCHHHHHHHHHHHHHcCCCCcchhhhhCCcHHHHHHHHHHHHHhC--CCeEEEECchHH
Confidence 346999999886 668875 99999999999988643211 12457788999999999996 467888999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHH
Q psy8199 326 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIAR 405 (965)
Q Consensus 326 A~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (965)
||+.|++++... .++.+++.+..||++....+..++.+ ...++.
T Consensus 117 an~~ai~~l~~~-------~~~~~v~~~~~~h~s~~~~~~~~g~~------------~~~~~~----------------- 160 (402)
T TIGR01821 117 ANDATLATLAKI-------IPGCVIFSDELNHASMIEGIRHSGAE------------KFIFRH----------------- 160 (402)
T ss_pred HHHHHHHHhhCC-------CCCCEEEEcchHhHHHHHHHHHcCCe------------EEEECC-----------------
Confidence 999999988642 23567788888999876655444311 111221
Q ss_pred HHHHHHHHHHHhCC-CcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEecccc-C-CCcccccccccccCC
Q psy8199 406 CAIFDLEILLKKNH-NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAV-G-CGRTGKFFACEHAEI 482 (965)
Q Consensus 406 ~d~~~le~~l~~~~-~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-g-~gr~G~~~~~~~~~~ 482 (965)
+|+++++++++... +++++|++|+ ++|++|.+.| +++|+++|++||+++|+||+|+ | +|..|.. ..++.++
T Consensus 161 ~d~~~l~~~l~~~~~~~~~~v~~e~-~~~~~G~~~~----l~~i~~l~~~~~~~livDea~~~G~~g~~g~g-~~~~~~~ 234 (402)
T TIGR01821 161 NDVAHLEKLLQSVDPNRPKIIAFES-VYSMDGDIAP----IEEICDLADKYGALTYLDEVHAVGLYGPRGGG-IAERDGL 234 (402)
T ss_pred CCHHHHHHHHHhccCCCCeEEEEcC-CCCCCCCccC----HHHHHHHHHHcCCEEEEeCcccccccCCCCCc-cchhccC
Confidence 35677777776443 3578999999 9999999887 9999999999999999999998 3 2444432 2455565
Q ss_pred --Cccee--eeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhccc-HHHHHHHH
Q psy8199 483 --WPDFL--CLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDN-ILQRISQD 557 (965)
Q Consensus 483 --~pDiv--t~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~-~~~~~~~~ 557 (965)
.||++ ||||++++ +-|++++++++++.+... ..+ +.+|.+.+|+++++++++|+.+++.+ +.++..++
T Consensus 235 ~~~~div~~t~sKa~g~---~GG~i~~~~~~~~~l~~~--~~~--~~~t~~~~~~~~aaa~aaL~~~~~~~~~~~~~~~~ 307 (402)
T TIGR01821 235 MHRIDIIEGTLAKAFGV---VGGYIAASRKLIDAIRSY--APG--FIFTTSLPPAIAAGATASIRHLKESQDLRRAHQEN 307 (402)
T ss_pred CCCCeEEEEechhhhcc---CCceeecCHHHHHHHHHh--CcC--ceecCcCCHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 47887 89999974 125688899998888641 111 22466789999999999999887543 45667788
Q ss_pred HHHHHHHHHcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHH-HcCcEEeec-------C-CEEEEeCCcc
Q psy8199 558 MKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAAL-KNELLLRPI-------G-NTVYLMPPYI 628 (965)
Q Consensus 558 ~~~l~~~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~-------~-~~lR~~p~~~ 628 (965)
++++.+.|+++ ++..+.+.|.++.+.+. + ...+..+.+.|+ ++||++++. + +++|++|++.
T Consensus 308 ~~~l~~~L~~~----g~~~~~~~~~i~~i~~~--~----~~~a~~~~~~L~~~~Gi~v~~~~~p~~~~g~~~lRis~~~~ 377 (402)
T TIGR01821 308 VKRLKNLLEAL----GIPVIPNPSHIVPVIIG--D----AALCKKVSDLLLNKHGIYVQPINYPTVPRGTERLRITPTPA 377 (402)
T ss_pred HHHHHHHHHHc----CCCcCCCCCCEEEEEeC--C----HHHHHHHHHHHHhcCCEEEEeECCCCCCCCCceEEEEeCCC
Confidence 99999988775 23334456777777553 2 122446778876 459998752 2 5899999999
Q ss_pred cCHHHHHHHHHhhhccc
Q psy8199 629 LNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 629 ~t~~~i~~~~~~l~~~~ 645 (965)
+++++++++++++.+..
T Consensus 378 ~t~edi~~~~~~l~~~~ 394 (402)
T TIGR01821 378 HTDKMIDDLVEALLLVW 394 (402)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 99999999999887654
|
This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives. |
| >PRK09064 5-aminolevulinate synthase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.3e-28 Score=278.17 Aligned_cols=330 Identities=18% Similarity=0.198 Sum_probs=242.2
Q ss_pred CCcccccccccchhccCCCC-CHHHHHHHHHHHhhccccc---cC-CCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHH
Q psy8199 252 SGKRYLDAISSWWVNLFGHS-NSYINKALKNQLNKLEHVM---LS-NLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASA 326 (965)
Q Consensus 252 dG~~ylD~~~~~~~~~lGh~-~p~v~~av~~~~~~~~~~~---~~-~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA 326 (965)
+|++++||.|+ .+||++ ||+|++|+.+++++.++.. .. .++++...+|+++|+++++ .+..++++||++|
T Consensus 44 ~~~~~~~~~s~---dylgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~la~~~g--~~~~~~~~sG~~a 118 (407)
T PRK09064 44 GEREVTVWCSN---DYLGMGQHPKVIEAMIEALDRCGAGAGGTRNISGTNHYHVELERELADLHG--KEAALVFTSGYVS 118 (407)
T ss_pred CCceEEEEECC---CCcCCCCCHHHHHHHHHHHHHcCCCCCCcCcCccCHHHHHHHHHHHHHHhC--CCcEEEECcHHHH
Confidence 36999999875 779998 9999999999998864321 11 2357889999999999986 4677888999999
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHH
Q psy8199 327 VEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARC 406 (965)
Q Consensus 327 ~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (965)
|+.|++++..+ .++.+++.+..+|++....+...+. ....++. +
T Consensus 119 n~~ai~~l~~~-------~~~~~i~~~~~~h~s~~~~~~~~~~------------~~~~~~~-----------------~ 162 (407)
T PRK09064 119 NDATLSTLAKL-------IPDCVIFSDELNHASMIEGIRRSRC------------EKHIFRH-----------------N 162 (407)
T ss_pred HHHHHHHHhCC-------CCCCEEEEeCcchHHHHHHHHHcCC------------cEEEECC-----------------C
Confidence 99999987543 2345677776677765444433321 1112221 3
Q ss_pred HHHHHHHHHHhCC-CcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEecccc-C-CCcccccccccccCC-
Q psy8199 407 AIFDLEILLKKNH-NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAV-G-CGRTGKFFACEHAEI- 482 (965)
Q Consensus 407 d~~~le~~l~~~~-~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-g-~gr~G~~~~~~~~~~- 482 (965)
|+++|+++++... +++++|++|+ +++++|.+.| +++|+++|++||+++|+||+|+ | ||+.|..+ .++.++
T Consensus 163 d~~~le~~l~~~~~~~~~~v~~~~-v~s~~G~~~~----l~~i~~l~~~~~~~livDEa~~~G~~g~~g~g~-~~~~~~~ 236 (407)
T PRK09064 163 DVAHLEELLAAADPDRPKLIAFES-VYSMDGDIAP----IAEICDLADKYNALTYLDEVHAVGMYGPRGGGI-AERDGLM 236 (407)
T ss_pred CHHHHHHHHHhccCCCCeEEEEeC-CCCCCccccC----HHHHHHHHHHcCCEEEEECCCcccccCCCCCCh-HHhcCCC
Confidence 6677888876432 4678999999 9999999887 9999999999999999999997 6 57777654 455665
Q ss_pred -Cccee--eeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhccc-HHHHHHHHH
Q psy8199 483 -WPDFL--CLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDN-ILQRISQDM 558 (965)
Q Consensus 483 -~pDiv--t~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~-~~~~~~~~~ 558 (965)
.||++ ||||+++. +-|++++++++++.+... ..+ +..|.+.+|+++++++++|+.+++.+ ..+++++++
T Consensus 237 ~~~div~~t~sKa~g~---~GG~~~~~~~~~~~l~~~--~~~--~~~t~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~ 309 (407)
T PRK09064 237 DRIDIIEGTLAKAFGV---MGGYIAGSAALVDAVRSY--APG--FIFTTSLPPAIAAAALASIRHLKESNEERERHQERA 309 (407)
T ss_pred CCCeEEEEecchhhhc---cCceEecCHHHHHHHHHh--Ccc--ccccCcCCHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 57888 89998863 125688899998877541 111 22456788999999999999887643 457888999
Q ss_pred HHHHHHHHcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHH-HcCcEEeec-------C-CEEEEeCCccc
Q psy8199 559 KKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAAL-KNELLLRPI-------G-NTVYLMPPYIL 629 (965)
Q Consensus 559 ~~l~~~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~-------~-~~lR~~p~~~~ 629 (965)
+++.+.|+++ ++..+.+.+.++.+.+. + ...+..+.+.|+ ++||++++. + +++|++|++.+
T Consensus 310 ~~l~~~L~~~----g~~~~~~~~~iv~i~~~--~----~~~~~~l~~~L~~~~gi~v~~~~~p~~~~~~~~lRis~~~~~ 379 (407)
T PRK09064 310 AKLKAALDAA----GIPVMPNESHIVPVMVG--D----PEKCKKASDMLLEEHGIYVQPINYPTVPRGTERLRITPTPFH 379 (407)
T ss_pred HHHHHHHHHc----CCCCCCCCCCEEEEEeC--C----HHHHHHHHHHHHHhCCEEEeeECCCCCCCCCceEEEEeCCCC
Confidence 9999999875 23333345667666553 2 122446777776 469999752 2 57999999999
Q ss_pred CHHHHHHHHHhhhccc
Q psy8199 630 NKNEIQHMTSAIFQTF 645 (965)
Q Consensus 630 t~~~i~~~~~~l~~~~ 645 (965)
++++++++++.+.+..
T Consensus 380 t~edi~~l~~~l~~~~ 395 (407)
T PRK09064 380 TDEMIDHLVEALVEVW 395 (407)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999999987654
|
|
| >KOG1919|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-28 Score=262.54 Aligned_cols=172 Identities=34% Similarity=0.522 Sum_probs=138.0
Q ss_pred CCccEEEecCcEEEEECCCCCeeeeCCCCCcccHHHHHHHHCCcccCCCCccccccCCCCCceEEEeEeCHHHHHHHHHH
Q psy8199 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQ 106 (965)
Q Consensus 27 ~~~~i~~e~~~~lv~nKP~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~RLD~~tsGlll~a~~~~~~~~l~~~ 106 (965)
..+.|+|||++|+|||||+|+++|+.......++...+..... ...+.++||||+.|||||+||++++.+..+.++
T Consensus 104 ~~~~Iv~ed~~~vVvnKP~gipVhp~g~~~~n~i~~~l~~~~~----~~~~~~~hRLDr~tSGllvlAkt~~~~~~~~~~ 179 (371)
T KOG1919|consen 104 LPIRIVFEDKDYVVVNKPHGIPVHPTGRYRENTITKILAALHK----VEGLRPCHRLDRLTSGLLVLAKTKEAADKFHEV 179 (371)
T ss_pred cccceEEecCCEEEEeCCCCCceeccCccccccchHHHHHhcc----ccccccccccCccccceEEEEechhHhHHHHHH
Confidence 5789999999999999999999997766555566666655421 235789999999999999999999999999999
Q ss_pred HHcCCcCeEE-EEEEcCccCCCceEe--eccccCCCCCeeEEEc-cC----CCCcceEEEEEEeEEeeccCCcEEEEEEE
Q psy8199 107 LKMHIVQRKY-LAMVWGIPKLNGMIN--AAIMRNPHNRIKMTVS-KN----FNAKPALTYYERLATGIINKKHISLIRCN 178 (965)
Q Consensus 107 ~~~~~~~K~Y-~a~v~g~~~~~~~~~--~~~~~~~~~~~~~~~~-~~----~~~~~~~t~~~~~~~~~~~~~~~s~~~~~ 178 (965)
|+++.++|.| .+-|.|..+..+.+. .+...... ...+.+. .. ..++.|.|.|+++.++ ...++|++.
T Consensus 180 ~r~~~~~k~Y~v~~v~g~fp~~~~~~i~~~~~~~~~-~~~~~l~~~~~~~~~~~k~a~T~~~~~~~~----~~ss~V~~~ 254 (371)
T KOG1919|consen 180 LRKRTVKKEYVVARVEGPFPVVGEVEIKEPIGEEER-PLRMGLNAVGVRDEVAAKDAKTLFKVLSYD----GGSSLVECR 254 (371)
T ss_pred HhcccceeEEEEEEEeccCCCCceEEeCCCcccccc-ccceEeeecccccccccccceeEEEEcccC----CceEEEEee
Confidence 9999999999 799999877544333 33322221 1112221 11 2479999999999986 889999999
Q ss_pred eCCCcccHHHHHHHHhCCceecCCCCCcc
Q psy8199 179 LKTGRTHQIRVHMQWLGHGIVGDNLYGKK 207 (965)
Q Consensus 179 ~~tGr~hQIR~~~~~~g~pi~gD~~~~~~ 207 (965)
|+|||+||||+||+++|+||+||++|+..
T Consensus 255 PlTGRtHQIRvHlq~lG~PI~gD~~Y~~~ 283 (371)
T KOG1919|consen 255 PLTGRTHQIRVHLQYLGHPIAGDPKYGNH 283 (371)
T ss_pred ccCCcHHHHHHHHHHhCCCcCCCcccccc
Confidence 99999999999999999999999999753
|
|
| >cd02556 PseudoU_synth_RluB PseudoU_synth_RluB: Pseudouridine synthase, Escherichia coli RluB like | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.3e-29 Score=243.13 Aligned_cols=143 Identities=21% Similarity=0.271 Sum_probs=115.3
Q ss_pred cEEEEECCCCCeeeeCCCCCcccHHHHHHHHCCcccCCCCccccccCCCCCceEEEeEeCHHHHHHHHHHHHcCCcCeEE
Q psy8199 37 EIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKY 116 (965)
Q Consensus 37 ~~lv~nKP~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~RLD~~tsGlll~a~~~~~~~~l~~~~~~~~~~K~Y 116 (965)
.|+|+|||+|++|++.+.....++.+.+..+. .+++++|||||++||||||||||++++++|++ ++++++|+|
T Consensus 1 ~~lvvnKP~G~~~~~~~~~~~~tl~~~l~~~~-----~~~~~~V~RLD~~TsGLll~ak~~~~~~~L~~--~~~~i~K~Y 73 (167)
T cd02556 1 RVLIYHKPEGLICTRKDPKGRPTVFDLLPKLG-----IPRWISVGRLDLNTEGLLLFTNDGELANRLMH--PSNEIEREY 73 (167)
T ss_pred CEEEEECCCCcEECccCCCCCccHHHhhhhhc-----cCceEEcCcCCCCCeeEEEEECCHHHHHHHhC--CcCCCCeEE
Confidence 37999999999999866555678888876542 13678999999999999999999999999987 889999999
Q ss_pred EEEEcCccCCCceEeeccccCCCCCeeEEEccCCCCcceEEEEEEeEEeeccCCcEEEEEEEeCCCcccHHHHHHHHhCC
Q psy8199 117 LAMVWGIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGH 196 (965)
Q Consensus 117 ~a~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~s~~~~~~~tGr~hQIR~~~~~~g~ 196 (965)
+|+|.|.++++. +. .+ . . .+.. .+++.+.|+|+++... .++|+++|+|.|||+||||+||+++||
T Consensus 74 ~a~V~g~~~~~~-~~-~~--~--~----gv~~-~~~~~~~~~~~~~~~~----~~~sll~v~l~tGR~HQIR~~~a~~G~ 138 (167)
T cd02556 74 AVRVFGQVTDEQ-LK-SL--K--K----GVEL-EDGFAGFKSIQLEGGE----GKNSWYRVTLREGRNREVRRLWEAFGL 138 (167)
T ss_pred EEEECccCCHHH-HH-HH--H--c----CCEE-CCCcCcceEEEEEecC----CCcEEEEEEEEeCCCHHHHHHHHHcCC
Confidence 999999886543 11 00 0 0 1111 2567888999998653 567999999999999999999999999
Q ss_pred ceecC
Q psy8199 197 GIVGD 201 (965)
Q Consensus 197 pi~gD 201 (965)
||+-=
T Consensus 139 pV~~L 143 (167)
T cd02556 139 QVSRL 143 (167)
T ss_pred eEeEE
Confidence 99853
|
This group is comprised of bacterial and eukaryotic proteins similar to E. coli RluB. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. E.coli RluB makes psi2605 in 23S RNA. psi2605 has been detected in eubacteria but, not in eukarya and archea despite the presence of a precursor U at that site. |
| >cd02870 PseudoU_synth_RsuA_like Pseudouridine synthases are responsible for the synthesis of pseudouridine from uracil in ribosomal RNA | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.7e-29 Score=239.95 Aligned_cols=140 Identities=24% Similarity=0.316 Sum_probs=112.0
Q ss_pred EEEEECCCCCeeeeCCCCCcccHHHHHHHHCCcccCCCCccccccCCCCCceEEEeEeCHHHHHHHHHHHHcCCcCeEEE
Q psy8199 38 IIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYL 117 (965)
Q Consensus 38 ~lv~nKP~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~RLD~~tsGlll~a~~~~~~~~l~~~~~~~~~~K~Y~ 117 (965)
|+|+|||+|++|++.+.....++.+.+... .+++.+|||||++||||||||||++++++|+. +++.++|+|+
T Consensus 1 ~ivvnKP~G~~~~~~~~~~~~~l~~~l~~~------~~~~~~vhRLD~~TsGlll~ak~~~~~~~l~~--~~~~i~K~Y~ 72 (146)
T cd02870 1 YLLLNKPRGVVSTVRDPEGRPTVLDLLKDV------GERLFPVGRLDYDTEGLLLLTNDGELANRLTH--PRYGVEKTYL 72 (146)
T ss_pred CEEEECCCCcEecccCCCCCCEEeeecccc------CCCEEECCCCCCCCeeEEEEeCCHHHHHHhhC--ccCCCCeEEE
Confidence 689999999999987755556666655332 24689999999999999999999999999987 6888999999
Q ss_pred EEEcCccCCCceEeeccccCCCCCeeEEEccCCCCcceEEEEEEeEEeeccCCcEEEEEEEeCCCcccHHHHHHHHhCCc
Q psy8199 118 AMVWGIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHG 197 (965)
Q Consensus 118 a~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~s~~~~~~~tGr~hQIR~~~~~~g~p 197 (965)
|+|.|.++++.. . .+. . .+.. .+++.+.|+|+++... .+.++++|+|.|||+||||+||+++|||
T Consensus 73 a~v~g~~~~~~~-~-~~~----~----~~~~-~~~~~~~t~~~~l~~~----~~~sll~~~l~tGR~HQIR~hla~~G~p 137 (146)
T cd02870 73 VKVRGVPSEEEL-R-RLR----A----GVEL-DDGKTAPAKVKVLSRD----PKNTLLEVTLHEGRNRQVRRMFEAVGHP 137 (146)
T ss_pred EEECCCCCHHHH-H-HHH----C----CeEe-CCceEcceEEEEeccC----CCCcEEEEEEEeCCcHHHHHHHHHcCCc
Confidence 999998865431 0 010 0 1111 2567889999999754 5679999999999999999999999999
Q ss_pred eec
Q psy8199 198 IVG 200 (965)
Q Consensus 198 i~g 200 (965)
|+.
T Consensus 138 I~~ 140 (146)
T cd02870 138 VLR 140 (146)
T ss_pred CCe
Confidence 973
|
The RsuA subfamily includes Pseudouridine Synthase similar to Ribosomal small subunit pseudouridine 516 synthase. Most of the proteins in this family are bacterial proteins. |
| >COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-26 Score=250.96 Aligned_cols=327 Identities=19% Similarity=0.211 Sum_probs=256.1
Q ss_pred cCCcccccccccchhccCCCC-CHHHHHHHHHHHhhcccc----ccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhH
Q psy8199 251 FSGKRYLDAISSWWVNLFGHS-NSYINKALKNQLNKLEHV----MLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGAS 325 (965)
Q Consensus 251 ~dG~~ylD~~~~~~~~~lGh~-~p~v~~av~~~~~~~~~~----~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGse 325 (965)
.+|++++||+|+ .+||.+ ||++++|+.+++++.+.. -...+.++...+|+++|++++ +.+.+++.+||..
T Consensus 36 ~~~~~~~nf~SN---dYLGLa~~~~~~~a~~~~~~~~g~g~~gsR~i~G~~~~h~~LE~~lA~f~--g~e~al~f~SGy~ 110 (388)
T COG0156 36 ADGRKVLNFCSN---DYLGLASHPELIEAAKAAIRRYGVGAGGSRLISGTSDLHVELEEELADFL--GAEAALLFSSGFV 110 (388)
T ss_pred cCCceeEeeecc---CcccccCCHHHHHHHHHHHHHhCCCCCCcCcccCCcHHHHHHHHHHHHHh--CCCcEEEEcccch
Confidence 349999999987 679986 999999999999884221 123468899999999999999 5789999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHH
Q psy8199 326 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIAR 405 (965)
Q Consensus 326 A~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (965)
||..++... .+++.+|+.|.-.|.+.+.+..+++... .. +.+
T Consensus 111 AN~~~i~~l---------~~~~dli~~D~lnHASiidG~rls~a~~--------------~~---------------f~H 152 (388)
T COG0156 111 ANLGLLSAL---------LKKGDLIFSDELNHASIIDGIRLSRAEV--------------RR---------------FKH 152 (388)
T ss_pred hHHHHHHHh---------cCCCcEEEEechhhhhHHHHHHhCCCcE--------------EE---------------ecC
Confidence 999999877 3668899999999999777777665221 11 122
Q ss_pred HHHHHHHHHHHhCC---CcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccc--ccccccc
Q psy8199 406 CAIFDLEILLKKNH---NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK--FFACEHA 480 (965)
Q Consensus 406 ~d~~~le~~l~~~~---~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~--~~~~~~~ 480 (965)
||+++||+.+++.. .+...|++|. |.++.|.+.| |++|.+||++||++|++||+|+ +|-.|+ .+..+++
T Consensus 153 nD~~~Le~~l~~~~~~~~~~~~Ivteg-VfSMdGdiAp----L~~l~~L~~ky~a~L~VDEAHa-~Gv~G~~GrG~~e~~ 226 (388)
T COG0156 153 NDLDHLEALLEEARENGARRKLIVTEG-VFSMDGDIAP----LPELVELAEKYGALLYVDEAHA-VGVLGPNGRGLAEHF 226 (388)
T ss_pred CCHHHHHHHHHhhhccCCCceEEEEec-cccCCCCcCC----HHHHHHHHHHhCcEEEEEcccc-ccccCCCCccHHHHh
Confidence 78999999998731 1468999999 9999999999 9999999999999999999996 776665 3456788
Q ss_pred CCCcc---ee--eeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc-ccHHHHH
Q psy8199 481 EIWPD---FL--CLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK-DNILQRI 554 (965)
Q Consensus 481 ~~~pD---iv--t~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~-~~~~~~~ 554 (965)
|+.++ ++ ||||++|+-+ |++++++.+.+.+.. ..+++++ |.+-+|..++++.++|+.+++ ++..+++
T Consensus 227 g~~~~~vdi~~gTlsKAlGs~G---g~v~g~~~~~d~L~~--~ar~~if--StalpP~~aaa~~~al~~l~~~~~~r~~L 299 (388)
T COG0156 227 GLEPEEVDIIVGTLGKALGSSG---GYIAGSAALIDYLRN--RARPFIF--STALPPAVAAAALAALRILEEGPERRERL 299 (388)
T ss_pred CCCCccceEEEEEchhhhcccC---ceeeCcHHHHHHHHH--hCCceec--cCCCCHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 88654 33 8999998622 679999999999987 4566663 445689999999999999975 4678889
Q ss_pred HHHHHHHHHHHHcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec--------CCEEEEeCC
Q psy8199 555 SQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI--------GNTVYLMPP 626 (965)
Q Consensus 555 ~~~~~~l~~~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~--------~~~lR~~p~ 626 (965)
+++.++++..+... ++........++.+.+. + +..+.++...|+++||++.+. ...+|++|+
T Consensus 300 ~~~~~~~~~~~~~~----~~~~~~s~s~I~pv~~g--d----~~~a~~~s~~l~~~Gi~v~~i~~PTVp~gtarlRi~lt 369 (388)
T COG0156 300 QELAAFFRSLLKAL----GLVLLPSESPIIPVILG--D----EERALEASRALLEEGIYVSAIRPPTVPKGTARLRITLT 369 (388)
T ss_pred HHHHHHHHHHHHhc----CCccCCCCCCeeeeEeC--C----HHHHHHHHHHHHHCCeeEeeecCCCCCCCcceEEEEec
Confidence 99999998666543 22233445556666664 3 334667888899889998742 268999999
Q ss_pred cccCHHHHHHHHHhhhc
Q psy8199 627 YILNKNEIQHMTSAIFQ 643 (965)
Q Consensus 627 ~~~t~~~i~~~~~~l~~ 643 (965)
..+++++|+.+++.+.+
T Consensus 370 a~ht~~~I~~l~~~l~~ 386 (388)
T COG0156 370 AAHTEEDIDRLAEALSE 386 (388)
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 99999999999988764
|
|
| >PLN03227 serine palmitoyltransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.5e-27 Score=262.97 Aligned_cols=336 Identities=13% Similarity=0.157 Sum_probs=231.3
Q ss_pred ccccccchhccCCCC-CHHHHHHHHHHHhhcccc-c---cCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHH
Q psy8199 257 LDAISSWWVNLFGHS-NSYINKALKNQLNKLEHV-M---LSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVAL 331 (965)
Q Consensus 257 lD~~~~~~~~~lGh~-~p~v~~av~~~~~~~~~~-~---~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al 331 (965)
|||.++ .+||.. ||++++++.+++++.+.. + ...+......+|+++++++++ .+..++.+||+.|+..++
T Consensus 1 ~~f~s~---dyLgl~~~~~~~~~~~~a~~~~g~~~~~sr~~yg~~~~~~~LE~~lA~~~g--~e~al~~~sG~~a~~~~i 75 (392)
T PLN03227 1 LNFATH---DFLSTSSSPTLRQTALESLSHYGCGSCGPRGFYGTIDAHLELEQCMAEFLG--TESAILYSDGASTTSSTV 75 (392)
T ss_pred CCCcCc---CccCCCCCHHHHHHHHHHHHHhCCCCcccccccCChHHHHHHHHHHHHHhC--CCcEEEecCcHHHHHHHH
Confidence 455553 556664 999999999999874211 1 112345678899999999995 457888888999998888
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHH
Q psy8199 332 KMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDL 411 (965)
Q Consensus 332 ~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l 411 (965)
.... .+++.|++.+..| ++......+++ ..+..++..+ ..+++.+
T Consensus 76 ~~l~--------~~GD~Vl~~~~~h-~s~~~~~~l~~------------~~~~~~~~~d--------------~~~l~~~ 120 (392)
T PLN03227 76 AAFA--------KRGDLLVVDRGVN-EALLVGVSLSR------------ANVRWFRHND--------------MKDLRRV 120 (392)
T ss_pred HHhC--------CCCCEEEEecccc-HHHHHHHHHcC------------CeEEEeCCCC--------------HHHHHHH
Confidence 7652 3567777777665 43332222211 1222222210 0233333
Q ss_pred HHHHHhC--------CCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEecccc--CCCcccccccccccC
Q psy8199 412 EILLKKN--------HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAV--GCGRTGKFFACEHAE 481 (965)
Q Consensus 412 e~~l~~~--------~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t--g~gr~G~~~~~~~~~ 481 (965)
.+.+... ..++..|++|| ++|++|.+.| +++|+++|++||+++|+||+++ .+|++|. ++++++|
T Consensus 121 ~~~i~~~~~a~~~~~~~~t~~vi~E~-v~~~~G~i~~----l~~i~~l~~~~g~~livDe~~~~g~~g~~G~-g~~~~~g 194 (392)
T PLN03227 121 LEQVRAQDVALKRKPTDQRRFLVVEG-LYKNTGTLAP----LKELVALKEEFHYRLILDESFSFGTLGKSGR-GSLEHAG 194 (392)
T ss_pred HHHhhhhccccccccCCCcEEEEEcC-CcCCCCcccC----HHHHHHHHHHcCCEEEEECcccccccCCCCC-cHHHHcC
Confidence 3333211 13578899999 9999999887 9999999999999999999997 3344444 6789999
Q ss_pred CCc----ceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCC--HHHHHHHHHHHHH-HhcccHHHHH
Q psy8199 482 IWP----DFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGN--PLACCAALATLEI-FNKDNILQRI 554 (965)
Q Consensus 482 ~~p----Divt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~--~~~~aaa~a~L~~-~~~~~~~~~~ 554 (965)
+.| |++++|++-+.| +..|++++++++++.+.. ..++.||+++ |+.+++++++++. ++.+++.+++
T Consensus 195 ~~p~~~~Div~~slsk~~g-~~gg~v~~~~~~~~~~~~------~~~~~~~~~~~~p~~~~aa~~al~~~~~~~~~~~~l 267 (392)
T PLN03227 195 LKPMVHAEIVTFSLENAFG-SVGGMTVGSEEVVDHQRL------SGSGYCFSASAPPFLAKADATATAGELAGPQLLNRL 267 (392)
T ss_pred CCCCCCceEEEeechhhhh-ccCcEEecCHHHHHHHHH------hCcCccccCCCCHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 999 999877443333 345677889998877653 3466788876 8788888877755 4556789999
Q ss_pred HHHHHHHHHHHHcccCCCceeeeec--------eeEEEEEEEeecCccch----hhHHHHHHHHHHHcCcEEeecC----
Q psy8199 555 SQDMKKITKALTSLITHPKIINFRQ--------KGMIWAFDVIIEDPEQI----ETFSKKFFVAALKNELLLRPIG---- 618 (965)
Q Consensus 555 ~~~~~~l~~~L~~l~~~~~i~~v~g--------~G~~~~i~~~~~~~~~~----~~~~~~~~~~l~~~Gi~~~~~~---- 618 (965)
++++++|+++|++ ..+|.+.++++ .|.|+.+++. .+..+. ......+.+.|+++|+++.+.+
T Consensus 268 ~~~~~~l~~~L~~-~~~~~~~~~rg~~~~~~~~~~~i~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~Gi~~~~~~~~~~ 345 (392)
T PLN03227 268 HDSIANLYSTLTN-SSHPYALKLRNRLVITSDPISPIIYLRLS-DQEATRRTDETLILDQIAHHSLSEGVAVVSTGGHVK 345 (392)
T ss_pred HHHHHHHHHHHHh-cCCccccccccccccCCCCCCCEEEEEeC-CHHHhhhhhhhhHHHHHHHHHHHCCCEEEecccccC
Confidence 9999999999986 34565666666 3567888885 111110 1123478889999999986422
Q ss_pred --------CEEEEeCCcccCHHHHHHHHHhhhccccc
Q psy8199 619 --------NTVYLMPPYILNKNEIQHMTSAIFQTFNE 647 (965)
Q Consensus 619 --------~~lR~~p~~~~t~~~i~~~~~~l~~~~~~ 647 (965)
..+|++.+..+|+++++++++.+.+++.+
T Consensus 346 ~~~~~~P~~~iR~~~~~~~t~eei~~~~~~l~~~~~~ 382 (392)
T PLN03227 346 KFLQLVPPPCLRVVANASHTREDIDKLLTVLGEAVEA 382 (392)
T ss_pred CcCCCCCCceEEEEecCCCCHHHHHHHHHHHHHHHHH
Confidence 35677777777999999999999876644
|
|
| >PF00849 PseudoU_synth_2: RNA pseudouridylate synthase This Prosite family is a subset of the Pfam family | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-27 Score=235.59 Aligned_cols=155 Identities=35% Similarity=0.483 Sum_probs=113.2
Q ss_pred cEEEEECCCCCeeeeCCCCCcccHHHHHHHHCCcccCCCCccccccCCCCCceEEEeEeCHHHHHHHHHHHHcCCcCeEE
Q psy8199 37 EIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKY 116 (965)
Q Consensus 37 ~~lv~nKP~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~RLD~~tsGlll~a~~~~~~~~l~~~~~~~~~~K~Y 116 (965)
+|+|+|||+|++|++..+....................+.+++|||||++||||||||+|++++++|+++|+.++++|+|
T Consensus 1 ~~ivvnKP~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~RLD~~TsGlll~a~~~~~~~~l~~~f~~~~~~K~Y 80 (164)
T PF00849_consen 1 NLIVVNKPAGVPVHPSDGNESKSVKELPALSLKRGDDPPELYPVHRLDRDTSGLLLFAKDKEAAAKLSKQFPKRKVEKTY 80 (164)
T ss_dssp SEEEEEE-TTSBSSSSSTBSSSSHHCHHHHHHHHCTTSGGGEESS---TT-EEEEEEESSHHHHHHHHHHHHTTCSEEEE
T ss_pred CEEEEECCCCCeEecCCCCCcccccchhhhhhhhccCCCceEECCCCCccccCCeeccCCcccccccccccccCCCcEEE
Confidence 68999999999999887432222222222211112335689999999999999999999999999999999999999999
Q ss_pred EEEEc-CccCCCceEeecccc--CCC-CCeeEEEccCCCCcceEEEEEEeEEe-----eccCCcEEEEEEEeCCCcccHH
Q psy8199 117 LAMVW-GIPKLNGMINAAIMR--NPH-NRIKMTVSKNFNAKPALTYYERLATG-----IINKKHISLIRCNLKTGRTHQI 187 (965)
Q Consensus 117 ~a~v~-g~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~t~~~~~~~~-----~~~~~~~s~~~~~~~tGr~hQI 187 (965)
+|+|. +..+..+.++.++.. ... ...... ...+++.+.|.|+++... .....+.++++|+|.|||+|||
T Consensus 81 ~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~s~v~~~l~tGr~HQI 158 (164)
T PF00849_consen 81 LALVEGGPVEEEGKINSPLGKDVGKNKSSNKDP--PGRDGKPAITRYRVLRSGSRTPSKDENAGCSLVECELITGRTHQI 158 (164)
T ss_dssp EEEECSSSSTTCEEEESHEEE-EECSSCTCCEE--ETTTSBTSEEEEEEEEEETT---EECCSSEEEEEEEESS-STTHH
T ss_pred EEeEcccccccceeeeccccccccccccceeee--ecccccccceeeeeeccccccccccccCCCEEEEEEECcCCCHHH
Confidence 99999 555667888888766 111 122222 234789999999999875 2234789999999999999999
Q ss_pred HHHHHH
Q psy8199 188 RVHMQW 193 (965)
Q Consensus 188 R~~~~~ 193 (965)
|+||++
T Consensus 159 R~hla~ 164 (164)
T PF00849_consen 159 RVHLAH 164 (164)
T ss_dssp HHHHHH
T ss_pred HHHhcC
Confidence 999986
|
This Prosite family is a subset of the Pfam family.; InterPro: IPR006145 Pseudouridine synthases catalyse the isomerisation of uridine to pseudouridine (Psi) in a variety of RNA molecules, and may function as RNA chaperones. Pseudouridine is the most abundant modified nucleotide found in all cellular RNAs. There are four distinct families of pseudouridine synthases that share no global sequence similarity, but which do share the same fold of their catalytic domain(s) and uracil-binding site and are descended from a common molecular ancestor. The catalytic domain consists of two subdomains, each of which has an alpha+beta structure that has some similarity to the ferredoxin-like fold (note: some pseudouridine synthases contain additional domains). The active site is the most conserved structural region of the superfamily and is located between the two homologous domains. These families are []: Pseudouridine synthase I, TruA. Pseudouridine synthase II, TruB, which contains and additional C-terminal PUA domain. Pseudouridine synthase RsuA (ribosomal small subunit) and RluC/RluD (ribosomal large subunits), both of which contain an additional N-terminal alpha-L RNA-binding motif. Pseudouridine synthase TruD, which has a natural circular permutation in the catalytic domain, as well as an insertion of a family-specific alpha+beta subdomain. This entry represents several different pseudouridine synthases from family 3, including: RsuA (acts on small ribosomal subunit), RluA, RluB, RluC, RluD, RluE and RluF (act on large ribosomal subunit). RsuA from Escherichia coli catalyses formation of pseudouridine at position 516 in 16S rRNA during assembly of the 30S ribosomal subunit [, ]. RsuA consists of an N-terminal domain connected by an extended linker to the central and C-terminal domains. Uracil and UMP bind in a cleft between the central and C-terminal domains near the catalytic residue Asp 102. The N-terminal domain shows structural similarity to the ribosomal protein S4. Despite only 15% amino acid identity, the other two domains are structurally similar to those of the tRNA-specific psi-synthase TruA, including the position of the catalytic Asp. Our results suggest that all four families of pseudouridine synthases share the same fold of their catalytic domain(s) and uracil-binding site. RluB, RluC, RluD, RluE and RluF are homologous enzymes which each convert specific uridine bases in E. coli ribosomal 23S RNA to pseudouridine: RluB modifies uracil-2605. RluC modifies uracil-955, U-2504, and U-2580. RluD modifies uracil-1911, U-1915, and U-1917. RluE modifies uracil-3457. RluF modifies uracil-2604, and to a lesser extent U-2605. RluD also possesses a second function related to proper assembly of the 50S ribosomal subunit that is independent of Psi-synthesis [, ]. Both RluC and RluD have an N-terminal S4 RNA binding domain. Despite the conserved topology shared by RluC and RluD, the surface shape and charge distribution are very different. ; GO: 0003723 RNA binding, 0009982 pseudouridine synthase activity, 0001522 pseudouridine synthesis, 0009451 RNA modification; PDB: 2GML_A 3DH3_B 1VIO_A 2I82_B 1XPI_B 1V9K_B 1PRZ_A 1V9F_A 2IST_A 1QYU_A .... |
| >PRK05958 8-amino-7-oxononanoate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-25 Score=254.39 Aligned_cols=333 Identities=17% Similarity=0.161 Sum_probs=238.0
Q ss_pred eEEEecCCcccccccccchhccCCC-CCHHHHHHHHHHHhhcccc----ccCCCCcHHHHHHHHHHHhhcCCCCCeEEEc
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGH-SNSYINKALKNQLNKLEHV----MLSNLTHKPVIKLSEKLSSLTQYKLGHCFYG 320 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh-~~p~v~~av~~~~~~~~~~----~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~ 320 (965)
+||++ +|++|||+.++ .++|| .+|+|++|+.+++...... ....+..+...++++.++++++ .+.++++
T Consensus 32 ~~~~~-~g~~~id~~~~---~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~--~~~~i~~ 105 (385)
T PRK05958 32 RWLVV-DGRRMLNFASN---DYLGLARHPRLIAAAQQAARRYGAGSGGSRLVTGNSPAHEALEEELAEWFG--AERALLF 105 (385)
T ss_pred ceeEe-CCceEEEeeCC---CcccCCCCHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHHHHHHhC--CCcEEEE
Confidence 89997 99999999987 35897 6899999999999764311 1122456778999999999985 4677778
Q ss_pred CChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCCh
Q psy8199 321 SDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSA 400 (965)
Q Consensus 321 ~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (965)
++|++++..+++... .+++.|++.+ .+|+....+....+. .+..++.
T Consensus 106 ~~g~~~~~~~l~~~~--------~~gd~V~~~~-~~~~~~~~~~~~~g~------------~~~~~~~------------ 152 (385)
T PRK05958 106 SSGYAANLAVLTALA--------GKGDLIVSDK-LNHASLIDGARLSRA------------RVRRYPH------------ 152 (385)
T ss_pred CcHHHHHHHHHHHhC--------CCCCEEEEeC-ccCHHHHHHHHhcCC------------ceEEeCC------------
Confidence 889999988876542 2456666655 556654444333321 1223332
Q ss_pred hHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEecccc-C-CCcccccccc-
Q psy8199 401 NEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAV-G-CGRTGKFFAC- 477 (965)
Q Consensus 401 ~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-g-~gr~G~~~~~- 477 (965)
.|+++++++++....+++++++++ +++++|...+ +++|.++|++||+++|+||+|+ | +++.|..+..
T Consensus 153 -----~d~~~l~~~i~~~~~~~~lvi~~~-~~~~~G~~~~----l~~i~~ia~~~~~~li~De~~~~g~~~~~g~~~~~~ 222 (385)
T PRK05958 153 -----NDVDALEALLAKWRAGRALIVTES-VFSMDGDLAP----LAELVALARRHGAWLLVDEAHGTGVLGPQGRGLAAE 222 (385)
T ss_pred -----CCHHHHHHHHHhccCCCeEEEEEe-cccCCCCcCC----HHHHHHHHHHhCCEEEEECcccccccCCCCCchHHh
Confidence 257888888865333578899999 8999998776 9999999999999999999995 2 3334432211
Q ss_pred cccCCCcc---eeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcc-cHHHH
Q psy8199 478 EHAEIWPD---FLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKD-NILQR 553 (965)
Q Consensus 478 ~~~~~~pD---ivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~-~~~~~ 553 (965)
......+| +.++||+++. +.|++++++++++.+... .. .+..+.++++++++++.++|+.+.+. ...++
T Consensus 223 ~~~~~~~~~i~~~s~sK~~~~---~Gg~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~aa~~aal~~~~~~~~~~~~ 295 (385)
T PRK05958 223 AGLAGEPDVILVGTLGKALGS---SGAAVLGSETLIDYLINR--AR--PFIFTTALPPAQAAAARAALRILRREPERRER 295 (385)
T ss_pred hCCCCCCceEEEEechhhccc---CCcEEEcCHHHHHHHHHh--Cc--cceecCCCCHHHHHHHHHHHHHHhcCHHHHHH
Confidence 11223466 4578999864 337888898888876531 11 12344567899999999999987653 67788
Q ss_pred HHHHHHHHHHHHHcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec--------CCEEEEeC
Q psy8199 554 ISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI--------GNTVYLMP 625 (965)
Q Consensus 554 ~~~~~~~l~~~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~--------~~~lR~~p 625 (965)
+.++++++.+.|+++ ++..+.+.|.|+.+.+. + .....++.+.|.++||.+.+. .+++|++|
T Consensus 296 ~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~~~--~----~~~~~~~~~~l~~~gI~v~~~~~~~~~~~~~~lRis~ 365 (385)
T PRK05958 296 LAALIARLRAGLRAL----GFQLMDSQSAIQPLIVG--D----NERALALAAALQEQGFWVGAIRPPTVPAGTSRLRITL 365 (385)
T ss_pred HHHHHHHHHHHHHHc----CCCcCCCCCCEEEEEeC--C----HHHHHHHHHHHHHCCceEecccCCCCCCCCceEEEEe
Confidence 999999999999875 23334567888877763 1 122446888899999999752 25899999
Q ss_pred CcccCHHHHHHHHHhhhcc
Q psy8199 626 PYILNKNEIQHMTSAIFQT 644 (965)
Q Consensus 626 ~~~~t~~~i~~~~~~l~~~ 644 (965)
+..+++++++++++++.+.
T Consensus 366 ~~~~~~~~i~~~l~~l~~~ 384 (385)
T PRK05958 366 TAAHTEADIDRLLEALAEA 384 (385)
T ss_pred cCCCCHHHHHHHHHHHHhc
Confidence 9999999999999988654
|
|
| >PRK10839 16S rRNA pseudouridylate synthase A; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.6e-28 Score=253.74 Aligned_cols=146 Identities=18% Similarity=0.185 Sum_probs=111.1
Q ss_pred ecCcEEEEECCCCCeeeeCCCCCcccHHHHHHHHCCcccCCCCccccccCCCCCceEEEeEeCHHHHHHHHHHHHcCCcC
Q psy8199 34 EDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQ 113 (965)
Q Consensus 34 e~~~~lv~nKP~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~RLD~~tsGlll~a~~~~~~~~l~~~~~~~~~~ 113 (965)
++.+|+|+|||+|++||++.... .++...+.... ..++.+|||||++||||||||||+.++++|+. +.+.+.
T Consensus 58 ~~~~~lvvnKP~G~~~~~~~~~~-~tl~~~l~~~~-----~~~~~~v~RLD~~TSGlll~ak~~~~~~~l~~--~~~~i~ 129 (232)
T PRK10839 58 HGPRYFMLNKPQGYVCSTDDPDH-PTVLYFLDEPV-----AYKLHAAGRLDIDTTGLVLMTDDGQWSHRITS--PRHHCE 129 (232)
T ss_pred CCCEEEEEECCCCeEecccCCCC-CeEEEeccccc-----ccCceecCCCCCCceeEEEEecCHHHHHHHhC--CCCCCC
Confidence 35689999999999999875432 45543332111 12577999999999999999999999999997 788999
Q ss_pred eEEEEEEcCccCCCceEeeccccCCCCCeeEEEccCCCCcceEEEEEEeEEeeccCCcEEEEEEEeCCCcccHHHHHHHH
Q psy8199 114 RKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQW 193 (965)
Q Consensus 114 K~Y~a~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~s~~~~~~~tGr~hQIR~~~~~ 193 (965)
|+|+|.+++.+..+.. ......+.. +++.+.|+|.++... + .|+++|+|.|||+||||+||++
T Consensus 130 K~Y~a~i~~~i~~~~~----------~~~~~~~~~--~g~~a~t~~~~~~~~----~-~sll~~~l~tGRtHQIR~h~~~ 192 (232)
T PRK10839 130 KTYLVTLESPVADDTA----------EQFAKGVQL--HNEKDLTKPAVLEVI----T-PTQVRLTISEGRYHQVKRMFAA 192 (232)
T ss_pred eEEEEEECCCCCHHHH----------HHHHCCeEE--CCCcccccccEEEEe----c-CCEEEEEEEcCcCHHHHHHHHH
Confidence 9999999887653210 000111111 467788999998763 2 3899999999999999999999
Q ss_pred hCCceecCCCC
Q psy8199 194 LGHGIVGDNLY 204 (965)
Q Consensus 194 ~g~pi~gD~~~ 204 (965)
+||||+|=...
T Consensus 193 ~G~pi~gl~R~ 203 (232)
T PRK10839 193 VGNHVVELHRE 203 (232)
T ss_pred cCCeEeeEEEE
Confidence 99999996554
|
|
| >PLN02955 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-25 Score=250.11 Aligned_cols=334 Identities=16% Similarity=0.114 Sum_probs=242.5
Q ss_pred CCcccccccccchhccCCCC-CHHHHHHHHHHHhhccccc----cCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHH
Q psy8199 252 SGKRYLDAISSWWVNLFGHS-NSYINKALKNQLNKLEHVM----LSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASA 326 (965)
Q Consensus 252 dG~~ylD~~~~~~~~~lGh~-~p~v~~av~~~~~~~~~~~----~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA 326 (965)
.+++++||.|+ .+||.. ||++.+++.+++++.+... ...+.+....+|+++|++++ +.+.+++++||..|
T Consensus 100 ~~r~~l~FsSn---dYLGL~~~p~v~~a~~~ai~~yG~g~~gSrl~~G~~~~h~~LE~~LA~f~--g~e~all~sSGy~A 174 (476)
T PLN02955 100 RFKKLLLFSGN---DYLGLSSHPTISNAAANAAKEYGMGPKGSALICGYTTYHRLLESSLADLK--KKEDCLVCPTGFAA 174 (476)
T ss_pred CCceEEEeecc---CccCCCCCHHHHHHHHHHHHHcCCCCCCcCccccChHHHHHHHHHHHHHH--CCCcEEEECChHHH
Confidence 34688998875 678865 9999999999998864321 22356778899999999999 57899999999999
Q ss_pred HHHHHHHHHHHHH---hcC--CCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChh
Q psy8199 327 VEVALKMSFHYWY---NKG--FLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSAN 401 (965)
Q Consensus 327 ~~~Al~~a~~~~~---~~g--~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (965)
|..++........ ..+ ..+++.+|+.|..-|.+...+..++.... +.....++
T Consensus 175 N~~~i~aL~~~~~~~~~~~~~~~~~~d~i~~D~~~HaSI~dG~~ls~~~~----------~a~~~~f~------------ 232 (476)
T PLN02955 175 NMAAMVAIGSVASLLAASGKPLKNEKVAIFSDALNHASIIDGVRLAERQG----------NVEVFVYR------------ 232 (476)
T ss_pred HHHHHHHHhhccccccccccccCCCCcEEEEeccchHHHHHHHHhccccC----------CceEEEeC------------
Confidence 9999986521100 000 02456688889999998766655442110 11111122
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccc--cccccc
Q psy8199 402 EIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK--FFACEH 479 (965)
Q Consensus 402 ~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~--~~~~~~ 479 (965)
+||+++|++++++..++.++|++|+ +.++.|.+.| |++|.++|++||++||+||+|+ +|+.|+ .+..++
T Consensus 233 ---HND~~~Le~~L~~~~~~~~~Vv~Eg-V~SmdGdiap----L~eL~~L~~~~ga~LiVDEAH~-~Gv~G~~G~G~~e~ 303 (476)
T PLN02955 233 ---HCDMYHLNSLLSSCKMKRKVVVTDS-LFSMDGDFAP----MEELSQLRKKYGFLLVIDDAHG-TFVCGENGGGVAEE 303 (476)
T ss_pred ---CCCHHHHHHHHHhCCCCceEEEEeC-CCCCCCCcCC----HHHHHHHHHHcCcEEEEccccc-CceecCCCCcHHHH
Confidence 2799999999987666678999999 9999999988 9999999999999999999996 566776 456778
Q ss_pred cCCCcce----eeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcc-cHHHHH
Q psy8199 480 AEIWPDF----LCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKD-NILQRI 554 (965)
Q Consensus 480 ~~~~pDi----vt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~-~~~~~~ 554 (965)
+|+.+|+ .||||++|. .-|++++++++++.+.. ..+++.++ | +.+|..+++++++++.+..+ ...+++
T Consensus 304 ~g~~~di~ii~~TLsKA~G~---~GGfi~gs~~~~~~l~~--~~~~~ifS-t-alpp~~aaa~laal~l~~~~~~~r~~L 376 (476)
T PLN02955 304 FNCEADVDLCVGTLSKAAGC---HGGFIACSKKWKQLIQS--RGRSFIFS-T-AIPVPMAAAAYAAVVVARKEKWRRKAI 376 (476)
T ss_pred hCCCCCCcEEEEeCccchhc---cCceeecHHHHHHHHHH--hCCCCeec-c-cccHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 8887776 589999873 22458899999988875 22334322 2 45667778888999987543 455777
Q ss_pred HHHHHHHHHHHHcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec--------CCEEEEeCC
Q psy8199 555 SQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI--------GNTVYLMPP 626 (965)
Q Consensus 555 ~~~~~~l~~~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~--------~~~lR~~p~ 626 (965)
+++.+++++.+ ++. + ...++.+.+. + ...+..+.+.|+++|+++.+. ...+||+.+
T Consensus 377 ~~n~~~fr~~~-------G~~-~--~sPI~pI~ig--~----~~~a~~~~~~L~~~Gi~v~~i~yPtVP~g~~rLRi~ls 440 (476)
T PLN02955 377 WERVKEFKALS-------GVD-I--SSPIISLVVG--N----QEKALKASRYLLKSGFHVMAIRPPTVPPNSCRLRVTLS 440 (476)
T ss_pred HHHHHHHHHhc-------CCC-C--CCCEEEEEeC--C----HHHHHHHHHHHHHCCCEEEEECCCCCCCCCceEEEeeC
Confidence 77777777631 111 1 2455555554 2 333556889999999998742 247999999
Q ss_pred cccCHHHHHHHHHhhhcc
Q psy8199 627 YILNKNEIQHMTSAIFQT 644 (965)
Q Consensus 627 ~~~t~~~i~~~~~~l~~~ 644 (965)
..+++++|+.+++++.+.
T Consensus 441 A~Ht~edId~lv~~L~~~ 458 (476)
T PLN02955 441 AAHTTEDVKKLITALSSC 458 (476)
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999988654
|
|
| >cd02553 PseudoU_synth_RsuA PseudoU_synth_RsuA: Pseudouridine synthase, Escherichia coli RsuA like | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.4e-28 Score=234.92 Aligned_cols=142 Identities=21% Similarity=0.245 Sum_probs=109.0
Q ss_pred EEEEECCCCCeeeeCCCCCcccHHHHHHHHCCcccCCCCccccccCCCCCceEEEeEeCHHHHHHHHHHHHcCCcCeEEE
Q psy8199 38 IIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYL 117 (965)
Q Consensus 38 ~lv~nKP~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~RLD~~tsGlll~a~~~~~~~~l~~~~~~~~~~K~Y~ 117 (965)
|+|+|||+|++|+++.. ...++.+.+...+. .+++.+|||||++||||||||||.++++++.+ +.+.++|+|+
T Consensus 2 ~ivvnKP~G~~~~~~~~-~~~tl~~~l~~~~~----~~~~~~vhRLD~~TSGlll~ak~~~~~~~l~~--~~~~i~K~Y~ 74 (167)
T cd02553 2 YLMLNKPAGVVCATKDP-HHPTVIDLLPEPDR----RRDLFPVGRLDKDTTGLLLLTNDGQLAHRLTS--PKKHVPKTYE 74 (167)
T ss_pred EEEEECCCCCEeCCCCC-CCCcHHHHhhhhcc----cCCeEEcccCCCCCEEEEEEEeCHHHHHHhhC--CcCCCceEEE
Confidence 79999999999996543 45788888866542 24688999999999999999999999999988 6889999999
Q ss_pred EEEcCccCCCceEeeccccCCCCCeeEEEccCCCC-cceEEEEEEeEEeeccCCcEEEEEEEeCCCcccHHHHHHHHhCC
Q psy8199 118 AMVWGIPKLNGMINAAIMRNPHNRIKMTVSKNFNA-KPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGH 196 (965)
Q Consensus 118 a~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~s~~~~~~~tGr~hQIR~~~~~~g~ 196 (965)
|+|.|.++++.. .. + . . ..... ++ +...+.++++. .++++|+|.|||+||||+||+++||
T Consensus 75 a~V~G~~~~~~~-~~-~--~--~--~~~~~---~~~~~~~~~~~~~~--------~sll~v~l~tGR~HQIR~hla~lG~ 135 (167)
T cd02553 75 VTLAGPLTEDDI-EA-F--A--E--GVLLH---DGYPTKPAKLEILS--------PTTVRLTITEGKYHQVKRMFAAVGN 135 (167)
T ss_pred EEEccCCCHHHH-HH-H--H--C--CeEEc---CCCEeeeeEEEEeC--------CcEEEEEEEeCCCHHHHHHHHHcCC
Confidence 999998865321 10 0 0 0 01111 12 22344555542 2999999999999999999999999
Q ss_pred ceecCCCCC
Q psy8199 197 GIVGDNLYG 205 (965)
Q Consensus 197 pi~gD~~~~ 205 (965)
||++|..++
T Consensus 136 pI~~~~R~~ 144 (167)
T cd02553 136 KVVALHRIR 144 (167)
T ss_pred eEEEEEEEE
Confidence 999998775
|
This group is comprised of eukaryotic and bacterial proteins similar to Escherichia coli RsuA. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. E.coli RsuA makes psi516 in 16S RNA. Psi at this position is not generally conserved in other organisms. |
| >PRK07179 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-25 Score=257.22 Aligned_cols=323 Identities=16% Similarity=0.178 Sum_probs=228.9
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhcccc----ccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcC
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHV----MLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGS 321 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~----~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~ 321 (965)
.+++|.+|++|||+. +||+|++|+.+++++.+.. .......+...+|+++|++.++ .+.+++++
T Consensus 54 ~~~~~~~~~~YL~l~----------~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la~~~g--~~~~~~~~ 121 (407)
T PRK07179 54 PDAIILQSNDYLNLS----------GHPDIIKAQIAALQEEGDSLVMSAVFLHDDSPKPQFEKKLAAFTG--FESCLLCQ 121 (407)
T ss_pred CcEEEeecCCccCCC----------CCHHHHHHHHHHHHHhCCCCCccccccCCchHHHHHHHHHHHHhC--CCcEEEEC
Confidence 678899999999986 6899999999999875211 1111233578899999999985 56789999
Q ss_pred ChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChh
Q psy8199 322 DGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSAN 401 (965)
Q Consensus 322 sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (965)
||++||+.+++.+.. +++.+++ +...|.+........ +....+.+
T Consensus 122 sG~~An~~~l~~l~~--------~g~~v~~-~~~~h~s~~~~~~~~--------------g~~~~~~~------------ 166 (407)
T PRK07179 122 SGWAANVGLLQTIAD--------PNTPVYI-DFFAHMSLWEGVRAA--------------GAQAHPFR------------ 166 (407)
T ss_pred CHHHHHHHHHHHhCC--------CCCEEEE-ECCcCHHHHHHHHHC--------------CCeEEEec------------
Confidence 999999999997643 3345554 444454432221111 11122221
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCc---cccccccc
Q psy8199 402 EIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGR---TGKFFACE 478 (965)
Q Consensus 402 ~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr---~G~~~~~~ 478 (965)
.+|+++|++++++. +.++|++++ ++|++|.+.| +++|.++|++||+++|+||+|+ +|+ +|..+ ++
T Consensus 167 ---~~d~~~l~~~l~~~--~~~lV~v~~-v~n~tG~i~p----l~~I~~l~~~~~~~livDea~~-~g~~g~~g~g~-~~ 234 (407)
T PRK07179 167 ---HNDVDHLRRQIERH--GPGIIVVDS-VYSTTGTIAP----LADIVDIAEEFGCVLVVDESHS-LGTHGPQGAGL-VA 234 (407)
T ss_pred ---CCCHHHHHHHHHhc--CCeEEEECC-CCCCCCcccc----HHHHHHHHHHcCCEEEEECccc-ccCcCCCCCch-HH
Confidence 14788999988642 367899999 9999999988 8999999999999999999997 444 44322 44
Q ss_pred ccCCC--cceee--eccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcc-cHHHH
Q psy8199 479 HAEIW--PDFLC--LSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKD-NILQR 553 (965)
Q Consensus 479 ~~~~~--pDivt--~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~-~~~~~ 553 (965)
.+++. +|+++ +||++++ ++|++++++++++.+.. ...+..+++|+ ++..++++.++++.+... ...++
T Consensus 235 ~~~~~~~vdi~~~S~sK~~g~---~~G~l~~~~~~~~~~~~--~~~~~~~~~t~--~~~~~aa~~aal~~~~~~~~~~~~ 307 (407)
T PRK07179 235 ELGLTSRVHFITASLAKAFAG---RAGIITCPRELAEYVPF--VSYPAIFSSTL--LPHEIAGLEATLEVIESADDRRAR 307 (407)
T ss_pred hcCCCCCCCEEEeechHhhhc---cCeEEEeCHHHHHHHHH--hCcCeeeCCCC--CHHHHHHHHHHHHHHhcCHHHHHH
Confidence 56664 48764 6898864 68999999998887753 11223344554 355666677888877654 47788
Q ss_pred HHHHHHHHHHHHHcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEe----ec----CCEEEEeC
Q psy8199 554 ISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLR----PI----GNTVYLMP 625 (965)
Q Consensus 554 ~~~~~~~l~~~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~----~~----~~~lR~~p 625 (965)
++++++++++.|+++ ++ .+.+.|.++.+.+. + ......+.+.|.++||++. |. .+.+||++
T Consensus 308 l~~~~~~l~~~L~~~----g~-~v~~~~~i~~l~~~--~----~~~~~~~~~~L~~~GI~~~~~~~p~~~~~~~~lRis~ 376 (407)
T PRK07179 308 LHANARFLREGLSEL----GY-NIRSESQIIALETG--S----ERNTEVLRDALEERNVFGAVFCAPATPKNRNLIRLSL 376 (407)
T ss_pred HHHHHHHHHHHHHHc----CC-CCCCCCCEEEEEeC--C----HHHHHHHHHHHHHCCceEeeecCCCCCCCCceEEEEE
Confidence 999999999999876 22 23466788877763 1 1124467788999999743 32 36899999
Q ss_pred CcccCHHHHHHHHHhhhccc
Q psy8199 626 PYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 626 ~~~~t~~~i~~~~~~l~~~~ 645 (965)
+..+++++++++++++.+.+
T Consensus 377 ~~~~t~edi~~~~~~l~~~~ 396 (407)
T PRK07179 377 NADLTASDLDRVLEVCREAR 396 (407)
T ss_pred CCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999887543
|
|
| >cd02566 PseudoU_synth_RluE PseudoU_synth_RluE: Pseudouridine synthase, Escherichia coli RluE | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-27 Score=232.77 Aligned_cols=155 Identities=17% Similarity=0.182 Sum_probs=109.4
Q ss_pred EEEEECCCCCeeeeCCC-CCcccHHHHHHHHCCcccCCCCccccccCCCCCceEEEeEeCHHHHHHHHHHHHcCCcCeEE
Q psy8199 38 IIILNKSAGLVVHPAIG-NLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKY 116 (965)
Q Consensus 38 ~lv~nKP~G~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~v~RLD~~tsGlll~a~~~~~~~~l~~~~~~~~~~K~Y 116 (965)
|+++|||+|++|+++++ ....++.+.+.. +++.+|||||++||||||||+|++++++|.+ +++.++|+|
T Consensus 1 ~lv~nKP~G~~~~~~~~~~~~~~l~~~l~~--------~~~~~v~RLD~~TsGlll~a~d~~~~~~l~~--~~~~v~K~Y 70 (168)
T cd02566 1 LILFNKPYGVLSQFTDESEKHKTLKDYIDD--------PGVYAAGRLDRDSEGLLLLTDDGRLQHRITD--PSFKHPKTY 70 (168)
T ss_pred CEEEECCCCCEEecCCCcCCCccHHHHcCc--------CCeEEccCCCCCCeEEEEEEeCHHHHHHHHC--CCCCCCEEE
Confidence 68999999999998765 445677776631 3678999999999999999999999999988 677899999
Q ss_pred EEEEcCccCCCce--EeeccccCCCCCeeEEEccCCCCcceEEEEEEeEEeeccCCcEEEEEEEeCCCcccHHHHHHHHh
Q psy8199 117 LAMVWGIPKLNGM--INAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWL 194 (965)
Q Consensus 117 ~a~v~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~s~~~~~~~tGr~hQIR~~~~~~ 194 (965)
+|+|.|.++++.. +..++..+........+..........+.|+++... ...+.|+++|+|.|||+||||+||+++
T Consensus 71 ~a~v~g~~~~~~~~~l~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~--~~~~~sll~v~l~tGR~HQIR~~la~l 148 (168)
T cd02566 71 YVQVEGVPTEDALEQLRNGVELGDGLTLPAKVEKVDEPPWLWEREPPIRFR--KNIPTSWIEITICEGKNRQVRRMTAAV 148 (168)
T ss_pred EEEECCcCCHHHHHHHhCCcEECCeEecceEEEEecccccccccccccccc--cCCCccEEEEEEecCccHHHHHHHHHc
Confidence 9999999865321 122222211111111221111122344455555431 124568999999999999999999999
Q ss_pred CCceecCCCC
Q psy8199 195 GHGIVGDNLY 204 (965)
Q Consensus 195 g~pi~gD~~~ 204 (965)
||||+.....
T Consensus 149 G~pV~~L~R~ 158 (168)
T cd02566 149 GFPTLRLIRV 158 (168)
T ss_pred CCeEeEEEEE
Confidence 9999976543
|
This group is comprised of bacterial proteins similar to E. coli RluE. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. Escherichia coli RluE makes psi2457 in 23S RNA. psi2457 is not universally conserved. |
| >TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-24 Score=247.23 Aligned_cols=333 Identities=16% Similarity=0.172 Sum_probs=232.1
Q ss_pred eEEEecCCcccccccccchhccCCC-CCHHHHHHHHHHHhhccc----cccCCCCcHHHHHHHHHHHhhcCCCCCeEEEc
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGH-SNSYINKALKNQLNKLEH----VMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYG 320 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh-~~p~v~~av~~~~~~~~~----~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~ 320 (965)
+||+ .||++||||.++ .++|| .+|++.+++.+++++... +....+..+...++++++++.++ .+..++.
T Consensus 26 ~~~~-~~g~~~id~~~~---~~~g~~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~l~~~~g--~~~~i~~ 99 (385)
T TIGR01825 26 PRVR-VNGKEVINLSSN---NYLGFADHPRLKEAAAQAIQQYGVGAGAVRTIAGTLRLHEELEEKLAKFKK--TEAALVF 99 (385)
T ss_pred ceEE-ECCceEEEeecc---CccCCCCCHHHHHHHHHHHHHcCCCCCccCcccCCcHHHHHHHHHHHHHhC--CCcEEEE
Confidence 7899 999999999775 55899 799999999999876422 22234567889999999999886 3455666
Q ss_pred CChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCCh
Q psy8199 321 SDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSA 400 (965)
Q Consensus 321 ~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (965)
+||++|+..|++.+. .+++.|++.+ .+|+....++...+. ....++.
T Consensus 100 ~sG~~a~~~a~~~~~--------~~gd~vi~~~-~~~~~~~~~~~~~g~------------~~~~~~~------------ 146 (385)
T TIGR01825 100 QSGFNTNQGVLSALL--------RKGDIVLSDE-LNHASIIDGLRLTKA------------TKKIYKH------------ 146 (385)
T ss_pred CcHHHHHHHHHHHhC--------CCCCEEEEEc-cccHHHHHHHHhcCC------------ceEEeCC------------
Confidence 788999998888663 2455666554 555554433333221 1111111
Q ss_pred hHHHHHHHHHHHHHHHhC-CCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccC--CCcccccccc
Q psy8199 401 NEIARCAIFDLEILLKKN-HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVG--CGRTGKFFAC 477 (965)
Q Consensus 401 ~~~~~~d~~~le~~l~~~-~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg--~gr~G~~~~~ 477 (965)
.|++++++.+.+. ..++++|++++ +++++|.+.+ +++|.++|++||+++|+||+|+. +++.|. +..
T Consensus 147 -----~d~~~l~~~l~~~~~~~~~~v~~~~-v~~~tG~~~~----~~~i~~l~~~~~~~li~De~~~~~~~~~~~~-~~~ 215 (385)
T TIGR01825 147 -----ADMDDLDRVLRENPSYGKKLIVTDG-VFSMDGDVAP----LPEIVELAERYGAVTYVDDAHGSGVMGEAGR-GTV 215 (385)
T ss_pred -----CCHHHHHHHHHhhccCCCeEEEEec-CCcCCCCccC----HHHHHHHHHHhCCEEEEECcccccCcCCCCC-ccH
Confidence 2556777777643 24678899999 8999998877 89999999999999999999963 344443 233
Q ss_pred cccCCCcc----eeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc-ccHHH
Q psy8199 478 EHAEIWPD----FLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK-DNILQ 552 (965)
Q Consensus 478 ~~~~~~pD----ivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~-~~~~~ 552 (965)
.++++.+| +.+|||++++ +.|++++++++++.+... ...+ ..+...+|+.++++.++|+.+.+ .+..+
T Consensus 216 ~~~~~~~~~~i~~~s~sK~~~~---~gG~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~a~~~al~~~~~~~~~~~ 288 (385)
T TIGR01825 216 HHFGLEDKVDIQVGTLSKAIGV---VGGYAAGHKELIEYLKNR--ARPF--LFSTAQPPAVVAALAAAVDELQRSPELME 288 (385)
T ss_pred hhcCCCcCCcEEEEeccHHhhc---CCCEEecCHHHHHHHHHh--Cccc--cccCCCCHHHHHHHHHHHHHHhcCHHHHH
Confidence 44455455 3589999854 447788899998887641 1111 12223578889999999987643 45778
Q ss_pred HHHHHHHHHHHHHHcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEee-------cC-CEEEEe
Q psy8199 553 RISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRP-------IG-NTVYLM 624 (965)
Q Consensus 553 ~~~~~~~~l~~~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~-------~~-~~lR~~ 624 (965)
++.++++++.+.|+++ ++....+.+.++.+.+. . ......+.+.|+++||++.+ .+ +.+|++
T Consensus 289 ~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~--~----~~~~~~~~~~L~~~gi~v~~~~~~~~~~~~~~iRi~ 358 (385)
T TIGR01825 289 RLWDNTRFFKAGLGKL----GYDTGGSETPITPVVIG--D----EKAAQEFSRRLFDEGIFAQSIVFPTVPRGTARIRNI 358 (385)
T ss_pred HHHHHHHHHHHHHHHc----CCCCCCCCCCEEEEEEC--C----HHHHHHHHHHHHHCCcEEcccCCCCCCCCCceEEEE
Confidence 8888999999999775 23333344555555542 1 11234688888889998853 12 689999
Q ss_pred CCcccCHHHHHHHHHhhhccc
Q psy8199 625 PPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 625 p~~~~t~~~i~~~~~~l~~~~ 645 (965)
|++.+++++++++++++.+.+
T Consensus 359 ~~~~~~~e~i~~~~~~l~~~~ 379 (385)
T TIGR01825 359 PTAEHTKDDLDQALDAYEKVG 379 (385)
T ss_pred EcCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999987654
|
This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions. |
| >COG1856 Uncharacterized homolog of biotin synthetase [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.9e-25 Score=210.16 Aligned_cols=235 Identities=18% Similarity=0.231 Sum_probs=207.6
Q ss_pred eEeEeeccCCCCCCCCCCCCCCcCCCCcccccCCCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHh
Q psy8199 682 AVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK 761 (965)
Q Consensus 682 ~~~i~~~s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~ 761 (965)
+..|+++.++|.+||.+|+.+. -.. .-.-+.+++++.+.++.+.|+..+.+.||..+....+++++.+.++++++
T Consensus 11 ~~sISVTG~yC~lnC~HCg~~~--L~~---Mi~vt~~~l~k~~~el~kkGy~g~llSGGm~srg~VPl~kf~d~lK~lke 85 (275)
T COG1856 11 FISISVTGAYCSLNCPHCGRHY--LEH---MIKVTTKSLLKRCMELEKKGYEGCLLSGGMDSRGKVPLWKFKDELKALKE 85 (275)
T ss_pred CceEEEeccceEecChHHHHHH--HHH---hcccchHHHHHHHHHHHhcCceeEEEeCCcCCCCCccHHHHHHHHHHHHH
Confidence 4567787899999999998432 222 11245688999999999999999999999988888899999999999997
Q ss_pred -cCcEeEEecCCCCHHHHHHHHHhCCCeEeccCCCCHHHHhcccC-CCCHHHHHHHHHHHHHcCCceeeeEEEec-CCCH
Q psy8199 762 -IGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIIS-TRDYENRLNTLKNVRNVGINICCGGIIGL-SESR 838 (965)
Q Consensus 762 -~~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~~es~~~~~~~i~~-~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl-~et~ 838 (965)
.++.+..+.|..+++.++.||++++|.+.+.+-+++++.+.+.+ +++.+++++.++.+++.|+++..|+++|+ .-..
T Consensus 86 ~~~l~inaHvGfvdE~~~eklk~~~vdvvsLDfvgDn~vIk~vy~l~ksv~dyl~~l~~L~e~~irvvpHitiGL~~gki 165 (275)
T COG1856 86 RTGLLINAHVGFVDESDLEKLKEELVDVVSLDFVGDNDVIKRVYKLPKSVEDYLRSLLLLKENGIRVVPHITIGLDFGKI 165 (275)
T ss_pred hhCeEEEEEeeeccHHHHHHHHHhcCcEEEEeecCChHHHHHHHcCCccHHHHHHHHHHHHHcCceeceeEEEEeccCcc
Confidence 79999999999999999999999999999999999999999988 67999999999999999999999999999 4444
Q ss_pred HHHHHHHHHHHhcCCCCCceeeccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceecccccc--ccchhhHHHHh
Q psy8199 839 DQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRK--EMGETTQAFCF 916 (965)
Q Consensus 839 ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~--~~~~~~~~~~l 916 (965)
+.-.+.++.|.+.. ++.+.+..++|.|||.|.+.+|++.+|..+++..||..+|+ .+.+.|+|+ ....+++..+.
T Consensus 166 ~~e~kaIdiL~~~~--~DalVl~vliPtpGtkm~~~~pp~~eE~i~v~~~AR~~f~~-pv~iGCmrP~Ge~rvk~d~~av 242 (275)
T COG1856 166 HGEFKAIDILVNYE--PDALVLVVLIPTPGTKMGNSPPPPVEEAIKVVKYARKKFPN-PVSIGCMRPRGEWRVKLDKEAV 242 (275)
T ss_pred cchHHHHHHHhcCC--CCeEEEEEEecCCchhccCCCCcCHHHHHHHHHHHHHhCCC-CeeEeecCcCchhHHHHHHHHH
Confidence 44567788889999 99999999999999999999999999999999999999999 688888884 44677888999
Q ss_pred hcCccEEe
Q psy8199 917 LAGANSIF 924 (965)
Q Consensus 917 ~~Gan~~~ 924 (965)
.+|+|.|-
T Consensus 243 ~~gVd~It 250 (275)
T COG1856 243 LAGVDRIT 250 (275)
T ss_pred HcCCceee
Confidence 99999864
|
|
| >cd02555 PSSA_1 PSSA_1: Pseudouridine synthase, a subgroup of the RsuA family | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.2e-26 Score=225.43 Aligned_cols=141 Identities=23% Similarity=0.304 Sum_probs=104.6
Q ss_pred CcEEEEECCCCCeeeeCCC--------CCcccHHHHHHHHCCcccCCCCccccccCCCCCceEEEeEeCHHHHHHHHHHH
Q psy8199 36 NEIIILNKSAGLVVHPAIG--------NLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQL 107 (965)
Q Consensus 36 ~~~lv~nKP~G~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~~~~v~RLD~~tsGlll~a~~~~~~~~l~~~~ 107 (965)
..|+++|||+|++|+..+. ....+..+.+...+ +++.+|||||++||||||||||+++++.|++
T Consensus 4 ~~y~llnKP~G~l~s~~d~~~~~g~~~~~~~~~~~~l~~~~------~~l~~VgRLD~dTsGLLl~t~d~~~~~~L~~-- 75 (177)
T cd02555 4 PVTLLLHKPAGMVSEQALALLGPGQRSAADRSGRRPLKGHF------ARLAPIGPLDKDASGLLVFSQDGRVLRKLIG-- 75 (177)
T ss_pred cEEEEEECCCceEecCCCcccccccccccccchhhhhhhcC------CceeEecCCCCCCeeEEEEECCHHHHHHHhC--
Confidence 4689999999999976552 12234445554433 3788999999999999999999999999999
Q ss_pred HcCCcCeEEEEEEcCccCCCce--EeeccccCCCCCeeEEEccCCCCcceEEEEEEeEEeeccCCcEEEEEEEeCCCccc
Q psy8199 108 KMHIVQRKYLAMVWGIPKLNGM--INAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTH 185 (965)
Q Consensus 108 ~~~~~~K~Y~a~v~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~s~~~~~~~tGr~h 185 (965)
+.+.++|+|+|+|.|.+++++. +..++..+. ...+++.+.+ .+.++++++|.|||+|
T Consensus 76 ~~~~i~K~Y~v~v~g~~~~~~l~~l~~g~~~~~-----------~~~~~~~~~~----------~~~~~l~i~l~tGr~h 134 (177)
T cd02555 76 DASRLEQEYLVEVRGELTAGGLERLNHGLTYDG-----------RELPPAKVSW----------QNEQRLRFALKEPQPG 134 (177)
T ss_pred hhcCCCEEEEEEEcccCCHHHHHHHhcCcccCC-----------eecceEEEEE----------cCCCEEEEEEECCcCh
Confidence 6788999999999998876432 222221110 0012233222 2247999999999999
Q ss_pred HHHHHHHHhCCceecCCCCC
Q psy8199 186 QIRVHMQWLGHGIVGDNLYG 205 (965)
Q Consensus 186 QIR~~~~~~g~pi~gD~~~~ 205 (965)
|||+||+++||||+|+....
T Consensus 135 QIR~~~~~~G~pV~~L~R~~ 154 (177)
T cd02555 135 QIRRMCESVGLEVVALRRIR 154 (177)
T ss_pred HHHHHHHHcCCeEEEEEEEE
Confidence 99999999999999998763
|
This group is comprised of bacterial proteins assigned to the RsuA family of pseudouridine synthases. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. The TruA family is comprised of proteins related to Escherichia coli RsuA. |
| >PRK13392 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.2e-24 Score=246.48 Aligned_cols=330 Identities=16% Similarity=0.185 Sum_probs=229.3
Q ss_pred cCCcccccccccchhccCCC-CCHHHHHHHHHHHhhccccc----cCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhH
Q psy8199 251 FSGKRYLDAISSWWVNLFGH-SNSYINKALKNQLNKLEHVM----LSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGAS 325 (965)
Q Consensus 251 ~dG~~ylD~~~~~~~~~lGh-~~p~v~~av~~~~~~~~~~~----~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGse 325 (965)
.+|+++++|.++ ..+|. +||++++|+.+++++.+... .....++...+|+++++++++ .+..++++||++
T Consensus 43 ~~~~~~~~~~sn---~yl~l~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~Le~~la~~~g--~~~~i~~~sG~~ 117 (410)
T PRK13392 43 DGPRRVTIWCSN---DYLGMGQHPDVIGAMVDALDRYGAGAGGTRNISGTSHPHVLLERELADLHG--KESALLFTSGYV 117 (410)
T ss_pred CCCceEEEEECC---CccCCCCCHHHHHHHHHHHHHcCCCCchhhhcccChHHHHHHHHHHHHHhC--CCCEEEECcHHH
Confidence 357889999885 55666 49999999999998764321 111234567899999999996 356777788999
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHH
Q psy8199 326 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIAR 405 (965)
Q Consensus 326 A~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (965)
|++.+++..... .+++ +|+.+..+|++...++...+.. +..++.
T Consensus 118 a~~~~i~~l~~~------~~g~-~vi~~~~~h~s~~~~~~~~g~~------------~~~~~~----------------- 161 (410)
T PRK13392 118 SNDAALSTLGKL------LPGC-VILSDALNHASMIEGIRRSGAE------------KQVFRH----------------- 161 (410)
T ss_pred HHHHHHHHHhcC------CCCC-EEEEehhhhHHHHHHHHHcCCe------------EEEEeC-----------------
Confidence 999999854321 1233 5666777898865544433311 111111
Q ss_pred HHHHHHHHHHHhC-CCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEecccc-CC-CcccccccccccCC
Q psy8199 406 CAIFDLEILLKKN-HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAV-GC-GRTGKFFACEHAEI 482 (965)
Q Consensus 406 ~d~~~le~~l~~~-~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-g~-gr~G~~~~~~~~~~ 482 (965)
+|.+++++.+++. .+++.+|++|+ ++|++|.+.+ +++|.++|++||+++|+||+|+ |+ |+.|..+ .++.++
T Consensus 162 ~d~~~l~~~l~~~~~~~t~~v~i~~-~~n~tG~~~~----l~~i~~l~~~~~~~livDea~~~g~~g~~g~g~-~~~~~~ 235 (410)
T PRK13392 162 NDLADLEEQLASVDPDRPKLIAFES-VYSMDGDIAP----IEAICDLADRYNALTYVDEVHAVGLYGARGGGI-AERDGL 235 (410)
T ss_pred CCHHHHHHHHHhccCCCCEEEEEeC-CCCCCccccc----HHHHHHHHHHcCCEEEEECCccccCcCCCCCch-hhhccC
Confidence 2345566666543 34678899999 8999999887 9999999999999999999998 43 5555433 344444
Q ss_pred --Cccee--eeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcc-cHHHHHHHH
Q psy8199 483 --WPDFL--CLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKD-NILQRISQD 557 (965)
Q Consensus 483 --~pDiv--t~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~-~~~~~~~~~ 557 (965)
.+|++ +|||+++. +-|++++++++++.+..- ..++ ..+.+.+|++++++.++|+.++.. ...+++.++
T Consensus 236 ~~~~div~~tlsK~~g~---~GG~~~~~~~~~~~l~~~--~~~~--~~s~~~~~~~~~a~~aaL~~~~~~~~~~~~~~~~ 308 (410)
T PRK13392 236 MDRIDMIQGTLAKAFGC---LGGYIAASADLIDFVRSF--APGF--IFTTALPPAVAAGATAAIRHLKTSQTERDAHQDR 308 (410)
T ss_pred CCCCcEEEEEChHhhhc---ccchhhcCHHHHHHHHHh--Ccch--hccCcCCHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 46777 89998865 226778899998877641 1111 235567888999999999987643 245667888
Q ss_pred HHHHHHHHHcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHH-HcCcEEeec-------C-CEEEEeCCcc
Q psy8199 558 MKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAAL-KNELLLRPI-------G-NTVYLMPPYI 628 (965)
Q Consensus 558 ~~~l~~~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~-------~-~~lR~~p~~~ 628 (965)
.+++++.|+++ ++....+.+.++.+.+. + .....++.+.|+ ++||++.+. + .++|+++++.
T Consensus 309 ~~~l~~~L~~~----g~~~~~~~~~~~~i~~~--~----~~~~~~~~~~L~~~~GI~v~~~~~p~~~~~~~~lRis~~~~ 378 (410)
T PRK13392 309 VAALKAKLNAN----GIPVMPSPSHIVPVMVG--D----PTLCKAISDRLMSEHGIYIQPINYPTVPRGTERLRITPTPL 378 (410)
T ss_pred HHHHHHHHHHc----CCCCCCCCCCEEEEEeC--C----HHHHHHHHHHHHHhCCEEEeeeCCCCCCCCCceEEEEECCC
Confidence 88888888765 33334566777655543 2 112446778886 689999753 2 5899999999
Q ss_pred cCHHHHHHHHHhhhcc
Q psy8199 629 LNKNEIQHMTSAIFQT 644 (965)
Q Consensus 629 ~t~~~i~~~~~~l~~~ 644 (965)
+++++++.+++++.+.
T Consensus 379 ~t~edid~l~~aL~~~ 394 (410)
T PRK13392 379 HDDEDIDALVAALVAI 394 (410)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999988755
|
|
| >PRK11394 23S rRNA pseudouridine synthase E; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.3e-26 Score=228.26 Aligned_cols=160 Identities=18% Similarity=0.168 Sum_probs=111.2
Q ss_pred ecCcEEEEECCCCCeeeeCCCCCcccHHHHHHHHCCcccCCCCccccccCCCCCceEEEeEeCHHHHHHHHHHHHcCCcC
Q psy8199 34 EDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQ 113 (965)
Q Consensus 34 e~~~~lv~nKP~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~RLD~~tsGlll~a~~~~~~~~l~~~~~~~~~~ 113 (965)
+...|+++|||+|++|+..+.....++.+.+. ..++++|||||++||||||||+|++++++|++ +++.+.
T Consensus 37 ~~~~ylllnKP~G~l~~~~d~~~~~tl~d~l~--------~~~~~~vgRLD~~TsGllLlt~d~~~~~~L~~--~~~~i~ 106 (217)
T PRK11394 37 QPTRVILFNKPYDVLPQFTDEAGRKTLKEFIP--------VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQ--PGKRTG 106 (217)
T ss_pred CCCEEEEEECCCCCEEeeCCccCCcchHHhcc--------cCCeEEecCCCCCCeeEEEEECCHHHHHHHhC--cccCCC
Confidence 34579999999999999766555678888763 13678999999999999999999999999999 688999
Q ss_pred eEEEEEEcCccCCCc--eEeeccccCCCCCeeEEEccCCCCcceEEEEEEeEEeeccCCcEEEEEEEeCCCcccHHHHHH
Q psy8199 114 RKYLAMVWGIPKLNG--MINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHM 191 (965)
Q Consensus 114 K~Y~a~v~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~s~~~~~~~tGr~hQIR~~~ 191 (965)
|+|+|+|.|.+.++. .+..++..+........+........-...++.+... ...+.++++|+|.|||+||||+||
T Consensus 107 K~Y~~~v~g~~~~~~l~~l~~Gv~i~~~~~~p~~~~~i~~~~~~~~~~~~~~~~--~~~~~s~l~I~L~eGR~hQIRrm~ 184 (217)
T PRK11394 107 KIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRER--KSIPTSWLKITLYEGRNRQVRRMT 184 (217)
T ss_pred EEEEEEECCCCCHHHHHHHhCCeEECCccccccEEEEecccccccccccccccc--cCCCceEEEEEEeCCCCHHHHHHH
Confidence 999999999886532 1222222221110000000000000000001111110 013568999999999999999999
Q ss_pred HHhCCceecCCCCC
Q psy8199 192 QWLGHGIVGDNLYG 205 (965)
Q Consensus 192 ~~~g~pi~gD~~~~ 205 (965)
+++||||+||..|+
T Consensus 185 a~lG~pVl~L~Ry~ 198 (217)
T PRK11394 185 AHVGFPTLRLIRYA 198 (217)
T ss_pred HHcCCeEeeeEEEE
Confidence 99999999999996
|
|
| >TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.1e-24 Score=241.83 Aligned_cols=335 Identities=15% Similarity=0.167 Sum_probs=234.7
Q ss_pred eEEEecCCcccccccccchhccCCCC-CHHHHHHHHHHHhhc-cccccCC---CCcHHHHHHHHHHHhhcCCCCCeEEEc
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHS-NSYINKALKNQLNKL-EHVMLSN---LTHKPVIKLSEKLSSLTQYKLGHCFYG 320 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~-~p~v~~av~~~~~~~-~~~~~~~---~~~~~~~~la~~l~~~~~~~~~~v~~~ 320 (965)
.++++.+|++|+||.++ .+||++ +|++++++.+++.+. ..++.+. +..+...++.+.+++.++ .+.++++
T Consensus 30 ~~~~~~~g~~~i~~~~~---~~lg~~~~~~v~~~~~~~~~~~~~~~~~s~~~~G~~~~~~~le~~ia~~~g--~~~~ii~ 104 (393)
T TIGR01822 30 ADIRVADGREVLNFCAN---NYLGLSSHPDLIQAAKDALDEHGFGMSSVRFICGTQDIHKELEAKIAAFLG--TEDTILY 104 (393)
T ss_pred ceEEecCCceEEEeeCC---CccccCCCHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHHHHHHHhC--CCcEEEE
Confidence 57888899999999987 568887 999999999998773 2222222 336667889999999996 3567777
Q ss_pred CChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCCh
Q psy8199 321 SDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSA 400 (965)
Q Consensus 321 ~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (965)
+||++|+..++.... .+++.|++.++.|++...+. ...+. .....+.
T Consensus 105 ~~~~~a~~~~~~~l~--------~~gd~vi~~~~~~~s~~~~~-~~~~~------------~~~~~~~------------ 151 (393)
T TIGR01822 105 ASCFDANGGLFETLL--------GAEDAIISDALNHASIIDGV-RLCKA------------KRYRYAN------------ 151 (393)
T ss_pred CchHHHHHHHHHHhC--------CCCCEEEEeccccHHHHHHH-HhcCC------------ceEEeCC------------
Confidence 999999998776553 25678888777766543222 11110 0111111
Q ss_pred hHHHHHHHHHHHHHHHhC---CCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccccc--c
Q psy8199 401 NEIARCAIFDLEILLKKN---HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKF--F 475 (965)
Q Consensus 401 ~~~~~~d~~~le~~l~~~---~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~--~ 475 (965)
+|+++|++.+.+. ..++.+|++++ +++++|.+.+ +++|.++|++||+++|+||+|. +|..|.. +
T Consensus 152 -----~d~~~l~~~i~~~~~~~~~~~~v~~~~-v~~~tG~~~~----l~~i~~la~~~~~~li~De~~~-~g~~~~~~~~ 220 (393)
T TIGR01822 152 -----NDMADLEAQLKEARAAGARHRLIATDG-VFSMDGVIAP----LDEICDLADKYDALVMVDECHA-TGFLGPTGRG 220 (393)
T ss_pred -----CCHHHHHHHHHhhhhcCCCceEEEEeC-CccCCCCcCC----HHHHHHHHHHcCCEEEEECCcc-ccCcCCCCCc
Confidence 4678888888753 22678899998 8999999877 9999999999999999999994 4433321 1
Q ss_pred cccccCC--Cccee--eeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc-ccH
Q psy8199 476 ACEHAEI--WPDFL--CLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK-DNI 550 (965)
Q Consensus 476 ~~~~~~~--~pDiv--t~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~-~~~ 550 (965)
..+..++ .+|++ ++||+++| +++|++++++++++.+... ..++..+ .+.++..+++++++|+.++. ++.
T Consensus 221 ~~~~~~~~~~~di~~~s~sK~l~g--~r~G~~~~~~~~~~~l~~~--~~~~~~~--~~~~~~~~~a~~~al~~~~~~~~~ 294 (393)
T TIGR01822 221 SHELCGVMGRVDIITGTLGKALGG--ASGGFTTARKEVVELLRQR--SRPYLFS--NSLPPAVVGASIKVLEMLEASNEL 294 (393)
T ss_pred hHHhcCCCCCCeEEEEEChHHhhC--CCcEEEEeCHHHHHHHHHh--Cccceec--CCCCHHHHHHHHHHHHHHhcCHHH
Confidence 2233444 36777 68999976 5899999999999887641 1122222 22356777788888887653 457
Q ss_pred HHHHHHHHHHHHHHHHcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec-------C-CEEE
Q psy8199 551 LQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-------G-NTVY 622 (965)
Q Consensus 551 ~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-------~-~~lR 622 (965)
.++++++.+++.+.|++. ++....+.+.++.+.+. + ......+.+.|.++||++... + ..+|
T Consensus 295 ~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~i~~~--~----~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~iR 364 (393)
T TIGR01822 295 RDRLWANTRYFRERMEAA----GFDIKPADHPIIPVMLY--D----AVLAQRFARRLLEEGIYVTGFFYPVVPKGQARIR 364 (393)
T ss_pred HHHHHHHHHHHHHHHHHc----CCCCCCCCCCEEEEEeC--C----HHHHHHHHHHHHHCCeeEeeeCCCCCCCCCceEE
Confidence 788899999999988764 22222334555555543 1 122456888899999988631 2 4799
Q ss_pred EeCCcccCHHHHHHHHHhhhccc
Q psy8199 623 LMPPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 623 ~~p~~~~t~~~i~~~~~~l~~~~ 645 (965)
+++++.+++++++++++++.+..
T Consensus 365 is~~~~~t~edi~~~~~~l~~~~ 387 (393)
T TIGR01822 365 VQISAAHTEEQLDRAVEAFTRIG 387 (393)
T ss_pred EEECCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999987643
|
This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function. |
| >COG1187 RsuA 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.7e-26 Score=229.12 Aligned_cols=181 Identities=21% Similarity=0.206 Sum_probs=137.6
Q ss_pred cccCCEEEEEcCCCCCCCCcccccCCCccEEE-ecCcEEEEECCCCCeeeeCCCCCcccHHHHHHHHCCcccCCCCcccc
Q psy8199 2 IISGYELIIIKPKKNFFLNKTEKKVIKLDIIY-EDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIV 80 (965)
Q Consensus 2 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~-e~~~~lv~nKP~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v 80 (965)
|++|+++ ++.+...++++.+.....+..+.+ +...|+++|||.|++|+..++.++.|+++.+....+ ...++++|
T Consensus 29 V~VnG~v-~~~~~~~v~~~~~~i~v~g~~~~~~~~~~y~llnKP~G~v~s~~D~~gr~tv~D~lp~~~~---~~~~~~pv 104 (248)
T COG1187 29 VTVNGKV-ATLGGVVVDPDDDVVEVDGKRIELKEERVYLLLNKPRGYVSSTEDDEGRPTVFDLLPERLP---RKKRLFPV 104 (248)
T ss_pred EEECCEE-eccCCeEeCCCCcEEEECCEEeeccccceEEEEECCCCeEecccCCCCCceeeeecccccc---cccceeec
Confidence 6778888 678888787776656666766777 455599999999999998877778899998864321 23469999
Q ss_pred ccCCCCCceEEEeEeCHHHHHHHHHHHHcCCcCeEEEEEEcCccCCC--ceEeeccccCCCCCeeEEEccCCCCcceEEE
Q psy8199 81 HRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLN--GMINAAIMRNPHNRIKMTVSKNFNAKPALTY 158 (965)
Q Consensus 81 ~RLD~~tsGlll~a~~~~~~~~l~~~~~~~~~~K~Y~a~v~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ 158 (965)
+|||+|||||||||+|++++++|.+ |+++++|+|+|.|.|.++++ ..+..++..+ ++....+.
T Consensus 105 GRLD~dTeGLLLLTnDG~la~rL~~--P~~~~~K~Y~v~v~g~~~~~~l~~l~~Gv~l~-------------d~~~~~~~ 169 (248)
T COG1187 105 GRLDKDTEGLLLLTNDGELAHRLMH--PSSEVEKEYLVRVEGPVTEEDLEKLRKGVTLD-------------DGETKPAK 169 (248)
T ss_pred cccCCCCeeEEEEeCCHHHHHHhcC--CCCCCCEEEEEEEecCCCHHHHHHHhCCcEec-------------Ccccccce
Confidence 9999999999999999999999999 99999999999999988764 2444444443 21122222
Q ss_pred EEEeEEeeccCCcEEEEEEEeCCCcccHHHHHHHHhCCceecCCC
Q psy8199 159 YERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNL 203 (965)
Q Consensus 159 ~~~~~~~~~~~~~~s~~~~~~~tGr~hQIR~~~~~~g~pi~gD~~ 203 (965)
+-.+... ...+.|+++++|.+||+||||+||+++|+||+.=..
T Consensus 170 ~~~l~~~--~~~~~s~~~itl~EGrnrQVRRm~~a~G~~V~~L~R 212 (248)
T COG1187 170 PASLEKE--PGKNNSWLRITLTEGRNRQVRRMFEAVGLEVLRLKR 212 (248)
T ss_pred eEEEEec--CCCCceEEEEEEeCCcCHHHHHHHHHcCCEEeEEEE
Confidence 1111111 012579999999999999999999999999976443
|
|
| >PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1e-23 Score=241.23 Aligned_cols=335 Identities=16% Similarity=0.172 Sum_probs=233.2
Q ss_pred eEEEecCCcccccccccchhccCCC-CCHHHHHHHHHHHhhcccc-c---cCCCCcHHHHHHHHHHHhhcCCCCCeEEEc
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGH-SNSYINKALKNQLNKLEHV-M---LSNLTHKPVIKLSEKLSSLTQYKLGHCFYG 320 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh-~~p~v~~av~~~~~~~~~~-~---~~~~~~~~~~~la~~l~~~~~~~~~~v~~~ 320 (965)
.++||.+|+.|+|+.++ .++|| .+|++.+++.+++++..+. . ...+..+...++++.+++.++. +..+++
T Consensus 34 ~~~~~~~g~~~i~l~~~---~~~~~~~~~~i~~a~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~la~~~g~--~~~i~~ 108 (397)
T PRK06939 34 ADITVADGKEVINFCAN---NYLGLANHPELIAAAKAALDSHGFGMASVRFICGTQDLHKELEEKLAKFLGT--EDAILY 108 (397)
T ss_pred ceEEecCCCeEEEeecc---CccccCCCHHHHHHHHHHHHHcCCCCcccccccCCcHHHHHHHHHHHHHhCC--CcEEEE
Confidence 68999999999999875 45788 5899999999998764321 1 1234567888999999999863 344555
Q ss_pred CChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCCh
Q psy8199 321 SDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSA 400 (965)
Q Consensus 321 ~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (965)
++|++|+..+++... .+++.|++.++.|.+........+. ....++.
T Consensus 109 tsG~~a~~~~~~~l~--------~~gd~vi~~~~~~~~~~~~~~~~~~-------------~~~~~~~------------ 155 (397)
T PRK06939 109 SSCFDANGGLFETLL--------GKEDAIISDALNHASIIDGVRLCKA-------------KRYRYAN------------ 155 (397)
T ss_pred cChHHHHHHHHHHhC--------CCCCEEEEEhhhhHHHHHHHHhcCC-------------ceEEeCC------------
Confidence 567999999887653 2567899988888665332221111 1222221
Q ss_pred hHHHHHHHHHHHHHHHhC---CCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEecccc-CC-Ccccccc
Q psy8199 401 NEIARCAIFDLEILLKKN---HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAV-GC-GRTGKFF 475 (965)
Q Consensus 401 ~~~~~~d~~~le~~l~~~---~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-g~-gr~G~~~ 475 (965)
.|++++++.+++. ..++++|++++ +++++|...+ +++|.++|++||+++|+||+|+ |+ ++.|. +
T Consensus 156 -----~d~~~l~~~i~~~~~~~~~~~~v~~~~-v~~~~G~~~~----~~~l~~la~~~~~~li~De~~~~g~~~~~~~-~ 224 (397)
T PRK06939 156 -----NDMADLEAQLKEAKEAGARHKLIATDG-VFSMDGDIAP----LPEICDLADKYDALVMVDDSHAVGFVGENGR-G 224 (397)
T ss_pred -----CCHHHHHHHHHhhhccCCCCeEEEEec-CcCCCCCcCC----HHHHHHHHHHhCCEEEEECcccccCcCCCCC-C
Confidence 2567777777542 22678899998 8899997655 9999999999999999999995 33 22332 1
Q ss_pred cccccCC--Cccee--eeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc-ccH
Q psy8199 476 ACEHAEI--WPDFL--CLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK-DNI 550 (965)
Q Consensus 476 ~~~~~~~--~pDiv--t~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~-~~~ 550 (965)
.....++ .+|++ +|||+++| +++|++++++++++.+... ..++.. +.+.++..++++.++++.+.+ +++
T Consensus 225 ~~~~~~~~~~~~i~~~S~sK~~~g--~r~G~v~~~~~~~~~l~~~--~~~~~~--~~~~~~~~~~a~~~al~~~~~~~~~ 298 (397)
T PRK06939 225 TVEHFGVMDRVDIITGTLGKALGG--ASGGYTAGRKEVIDWLRQR--SRPYLF--SNSLAPAIVAASIKVLELLEESDEL 298 (397)
T ss_pred HHHHcCCCCCCcEEEEECHHHhCc--cCceEEEeCHHHHHHHHHh--Cccccc--cCCCCHHHHHHHHHHHHHHhcCHHH
Confidence 2333454 45777 78999965 4889999999999888641 111212 223456677888888887754 356
Q ss_pred HHHHHHHHHHHHHHHHcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec--------CCEEE
Q psy8199 551 LQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI--------GNTVY 622 (965)
Q Consensus 551 ~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~--------~~~lR 622 (965)
.++++++.+++.+.|+++ ++....+.+.++.+.+. + .....++.+.|.++||.+.+. .+.+|
T Consensus 299 ~~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~~~--~----~~~~~~~~~~L~~~gI~v~~~~~~~~~~~~~~iR 368 (397)
T PRK06939 299 RDRLWENARYFREGMTAA----GFTLGPGEHPIIPVMLG--D----AKLAQEFADRLLEEGVYVIGFSFPVVPKGQARIR 368 (397)
T ss_pred HHHHHHHHHHHHHHHHHc----CCCcCCCCCCEEEEEEC--C----HHHHHHHHHHHHHCCceEeeeCCCCCCCCCceEE
Confidence 788888889998888765 22223455666655442 1 112456888899999988642 25799
Q ss_pred EeCCcccCHHHHHHHHHhhhccc
Q psy8199 623 LMPPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 623 ~~p~~~~t~~~i~~~~~~l~~~~ 645 (965)
+++++.+++++++++++++...+
T Consensus 369 i~~~~~~~~~~i~~~l~~L~~~~ 391 (397)
T PRK06939 369 TQMSAAHTKEQLDRAIDAFEKVG 391 (397)
T ss_pred EEECCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999987644
|
|
| >PRK10700 23S rRNA pseudouridylate synthase B; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-25 Score=237.26 Aligned_cols=143 Identities=17% Similarity=0.212 Sum_probs=108.8
Q ss_pred ecCcEEEEECCCCCeeeeCCCCCcccHHHHHHHHCCcccCCCCccccccCCCCCceEEEeEeCHHHHHHHHHHHHcCCcC
Q psy8199 34 EDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQ 113 (965)
Q Consensus 34 e~~~~lv~nKP~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~RLD~~tsGlll~a~~~~~~~~l~~~~~~~~~~ 113 (965)
|++.|+++|||+|++|++.+.....++++++.... ..++++|||||++||||||||+|++++++|++ ++++++
T Consensus 65 e~~~ylvlnKP~G~~~s~~d~~~~~tv~d~l~~~~-----~~~~~~VgRLD~dTsGLLLlTndg~~~~~L~~--p~~~i~ 137 (289)
T PRK10700 65 QICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLR-----GARWIAVGRLDVNTCGLLLFTTDGELANRLMH--PSREVE 137 (289)
T ss_pred cCCeEEEEECCCCCEeecCCCCCCccHHHHhhhhc-----CCceeEccCCCCCCceEEEEEcCHHHHHHHhC--ccCCCC
Confidence 44679999999999999887666679999886532 13578999999999999999999999999998 899999
Q ss_pred eEEEEEEcCccCCCce--EeeccccCCCCCeeEEEccCCCCcceEEEEEEeEEeeccCCcEEEEEEEeCCCcccHHHHHH
Q psy8199 114 RKYLAMVWGIPKLNGM--INAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHM 191 (965)
Q Consensus 114 K~Y~a~v~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~s~~~~~~~tGr~hQIR~~~ 191 (965)
|+|+|+|.|.++++.. +..++..+ ++. +.+..+... ......++++|+|.|||+||||+||
T Consensus 138 K~Y~v~V~G~~~~~~l~~l~~Gv~l~-------------~~~---~~~~~v~~~-~~~~~~s~l~v~L~EGk~hQIRrm~ 200 (289)
T PRK10700 138 REYAVRVFGQVDDAKLRQLSRGVQLE-------------DGP---AAFKTIKFS-GGEGINQWYNVTLTEGRNREVRRLW 200 (289)
T ss_pred eEEEEEEccCCCHHHHHHHHcCCEeC-------------Cce---eeeEEEEec-cCCCCceEEEEEEeCCccHHHHHHH
Confidence 9999999998865421 22222221 111 222222211 0013458999999999999999999
Q ss_pred HHhCCceec
Q psy8199 192 QWLGHGIVG 200 (965)
Q Consensus 192 ~~~g~pi~g 200 (965)
+++|+||+.
T Consensus 201 ~~lG~~V~~ 209 (289)
T PRK10700 201 EAVGVQVSR 209 (289)
T ss_pred HHcCCEEeE
Confidence 999999975
|
|
| >TIGR00858 bioF 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.7e-23 Score=234.56 Aligned_cols=329 Identities=16% Similarity=0.147 Sum_probs=227.9
Q ss_pred eEEEecCCcccccccccchhccCCC-CCHHHHHHHHHHHhhcccc-c---cCCCCcHHHHHHHHHHHhhcCCCCCeEEEc
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGH-SNSYINKALKNQLNKLEHV-M---LSNLTHKPVIKLSEKLSSLTQYKLGHCFYG 320 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh-~~p~v~~av~~~~~~~~~~-~---~~~~~~~~~~~la~~l~~~~~~~~~~v~~~ 320 (965)
.++. .+|++||||.+| .+||+ .+|++++++.+++...... + ...+.++...++++.++++++ .+..+++
T Consensus 9 ~~~~-~~g~~~id~~~~---~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~--~~~~i~~ 82 (360)
T TIGR00858 9 PEVV-RDGRRLLNFSSN---DYLGLASHPEVIQAAQQGAEQYGAGSTASRLVSGNSPLHEELEEELAEWKG--TEAALLF 82 (360)
T ss_pred CeEE-ECCceEEecccC---CcccCCCCHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHHHHHHhC--CCCEEEE
Confidence 4565 799999999987 57996 7899999999998764321 1 112345678889999999885 3456666
Q ss_pred CChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCCh
Q psy8199 321 SDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSA 400 (965)
Q Consensus 321 ~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (965)
++|++++..+++.+. .+++.|++.++.|... .......+ ..+..++.
T Consensus 83 ~~G~~~~~~~l~~~~--------~~gd~v~~~~~~~~~~-~~~~~~~g------------~~~~~~~~------------ 129 (360)
T TIGR00858 83 SSGYLANVGVISALV--------GKGDLILSDALNHASL-IDGCRLSG------------ARVRRYRH------------ 129 (360)
T ss_pred CchHHHHHHHHHHhC--------CCCCEEEEEccccHHH-HHHHHhcC------------CceEEecC------------
Confidence 778999888776552 2456777766655433 22222222 12222222
Q ss_pred hHHHHHHHHHHHHHHHhCC-CcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccc--cccc
Q psy8199 401 NEIARCAIFDLEILLKKNH-NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK--FFAC 477 (965)
Q Consensus 401 ~~~~~~d~~~le~~l~~~~-~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~--~~~~ 477 (965)
.|+++|++.+++.. .++++|++++ +++++|...+ +++|.++|+++|+++|+||+|+ +|..+. ....
T Consensus 130 -----~d~~~l~~~~~~~~~~~~~~v~~~~-~~~~~G~~~~----~~~i~~l~~~~~~~li~De~~~-~~~~~~~~~~~~ 198 (360)
T TIGR00858 130 -----NDVEHLERLLEKNRGERRKLIVTDG-VFSMDGDIAP----LPQLVALAERYGAWLMVDDAHG-TGVLGEDGRGTL 198 (360)
T ss_pred -----CCHHHHHHHHHHcccCCCeEEEEeC-CccCCCCCcC----HHHHHHHHHHcCcEEEEECccc-ccCcCCCCCchH
Confidence 26788888886542 3578888998 8899998776 8999999999999999999996 444332 1123
Q ss_pred cccCCCcc-----eeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc-ccHH
Q psy8199 478 EHAEIWPD-----FLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK-DNIL 551 (965)
Q Consensus 478 ~~~~~~pD-----ivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~-~~~~ 551 (965)
..+++.|| +.+|||++++ +.|++++++++++.+... ... +..+.+.++.+++++.++|+.+.. +...
T Consensus 199 ~~~~~~~~~~~i~i~s~sK~~~~---~gG~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~a~~~al~~~~~~~~~~ 271 (360)
T TIGR00858 199 EHFGLKPEPVDIQVGTLSKALGS---YGAYVAGSQALIDYLINR--ART--LIFSTALPPAVAAAALAALELIQEEPWRR 271 (360)
T ss_pred HhcCCCccCCcEEEEechhhhhc---cCcEEEcCHHHHHHHHHh--Ccc--ceecCCCCHHHHHHHHHHHHHHhhCHHHH
Confidence 34555544 4579998865 337888999988877531 111 122334678888888899987654 3567
Q ss_pred HHHHHHHHHHHHHHHcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec--------CCEEEE
Q psy8199 552 QRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI--------GNTVYL 623 (965)
Q Consensus 552 ~~~~~~~~~l~~~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~--------~~~lR~ 623 (965)
++++++.+++.+.|+++ ++....+.|.++.+.+. . .....++.+.|.++||++.+. ++.+|+
T Consensus 272 ~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~~~--~----~~~~~~~~~~l~~~gI~v~~~~~~~~~~~~~~iRi 341 (360)
T TIGR00858 272 EKLLALIARLRAGLEAL----GFTLMPSCTPIVPVIIG--D----NASALALAEELQQQGIFVGAIRPPTVPAGTSRLRL 341 (360)
T ss_pred HHHHHHHHHHHHHHHHc----CCccCCCCCCEEEEEeC--C----HHHHHHHHHHHHHCCeeEeeeCCCCCCCCCceEEE
Confidence 88999999999999775 22233455777777663 1 112446888899999999641 258999
Q ss_pred eCCcccCHHHHHHHHHhh
Q psy8199 624 MPPYILNKNEIQHMTSAI 641 (965)
Q Consensus 624 ~p~~~~t~~~i~~~~~~l 641 (965)
+++..+++++++++++++
T Consensus 342 s~~~~~~~~~i~~~l~~l 359 (360)
T TIGR00858 342 TLSAAHTPGDIDRLAEAL 359 (360)
T ss_pred EEcCCCCHHHHHHHHHhh
Confidence 999999999999999876
|
This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model. |
| >COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.1e-23 Score=231.75 Aligned_cols=336 Identities=15% Similarity=0.093 Sum_probs=238.6
Q ss_pred cccccccccchhccCCCCCHHHHHHHHHHHhhcc-ccccCCCCcHHHHHHHHHHHhhcCC--CCCe-EEEcCChhHHHHH
Q psy8199 254 KRYLDAISSWWVNLFGHSNSYINKALKNQLNKLE-HVMLSNLTHKPVIKLSEKLSSLTQY--KLGH-CFYGSDGASAVEV 329 (965)
Q Consensus 254 ~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~-~~~~~~~~~~~~~~la~~l~~~~~~--~~~~-v~~~~sGseA~~~ 329 (965)
...+|+..|.. --..++.+.+++.+++.... +|+...+..++++.+++++.+..+. ..++ |+.|+|+++|+..
T Consensus 28 ~~vi~l~iG~P---d~~~p~~i~~a~~~a~~~~~~~Y~~~~G~~~LReaia~~~~~~~~~~~~~~~eiivt~Ga~~al~~ 104 (393)
T COG0436 28 EDVIDLSIGEP---DFPTPEHIIEAAIEALEEGGTHYTPSAGIPELREAIAEKYKRRYGLDVDPEEEIIVTAGAKEALFL 104 (393)
T ss_pred CCEEEeCCCCC---CCCCCHHHHHHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCCHHHHHHH
Confidence 36788877633 22257889999999998864 5556778888899999999988752 3444 9999999999999
Q ss_pred HHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCC--CCCCCCCCChhHHHHHH
Q psy8199 330 ALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPD--SRNINKGNSANEIARCA 407 (965)
Q Consensus 330 Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~d 407 (965)
++..... ++++||+++|+|..+.......++. .+.+|... ..+. -|
T Consensus 105 ~~~a~~~--------pGDeVlip~P~Y~~y~~~~~~~gg~-------------~v~v~l~~~~~~f~-----------~d 152 (393)
T COG0436 105 AFLALLN--------PGDEVLIPDPGYPSYEAAVKLAGGK-------------PVPVPLDEEENGFK-----------PD 152 (393)
T ss_pred HHHHhcC--------CCCEEEEeCCCCcCHHHHHHhcCCE-------------EEEEeCCcCccCCc-----------CC
Confidence 9987764 6788999999998886665555552 23333211 1111 27
Q ss_pred HHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccc-c-ccccccCCCcc
Q psy8199 408 IFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK-F-FACEHAEIWPD 485 (965)
Q Consensus 408 ~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~-~-~~~~~~~~~pD 485 (965)
+++|++++.+ ++.+|+++. ++|++|.+. ++++|++|.++|++||+++|+||+|.+|...|. + ...+..+..-.
T Consensus 153 ~~~l~~~i~~---ktk~i~ln~-P~NPTGav~-~~~~l~~i~~~a~~~~i~ii~DEiY~~l~yd~~~~~s~~~~~~~~~~ 227 (393)
T COG0436 153 LEDLEAAITP---KTKAIILNS-PNNPTGAVY-SKEELKAIVELAREHDIIIISDEIYEELVYDGAEHPSILELAGARDR 227 (393)
T ss_pred HHHHHhhcCc---cceEEEEeC-CCCCcCcCC-CHHHHHHHHHHHHHcCeEEEEehhhhhcccCCCCcCCHhhcCCCcce
Confidence 8999988863 566666655 599999876 888899999999999999999999999988774 2 22222222112
Q ss_pred ee---eeccccCCCcccceeeeec-HHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccH----HHHHHHH
Q psy8199 486 FL---CLSKGITGGYLPLSLVMTT-DKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNI----LQRISQD 557 (965)
Q Consensus 486 iv---t~sK~l~gG~~pig~v~~~-~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~----~~~~~~~ 557 (965)
.+ +|||..+-.+|++|+++++ +++++.+.. +....+++.+.++|.+|.++|+.-.+.+. .+..+++
T Consensus 228 ~i~i~s~SK~~~mtGwRvG~~v~~~~~l~~~~~~------~~~~~~~~~~~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~r 301 (393)
T COG0436 228 TITINSFSKTYGMTGWRIGWVVGPPEELIAALRK------LKSYLTSCAPTPAQYAAIAALNGPQSDEVVEEMREEYRER 301 (393)
T ss_pred EEEEecccccccccccceeEeecChHHHHHHHHH------HHHhcccCCCHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 33 5899544322999999998 888887764 34456668899999999999974322122 2445666
Q ss_pred HHHHHHHHHcccCCCceeeee-ceeEEEEEEEeecCccchhhHHHHHHHHHH-HcCcEEeec--------CCEEEEeCCc
Q psy8199 558 MKKITKALTSLITHPKIINFR-QKGMIWAFDVIIEDPEQIETFSKKFFVAAL-KNELLLRPI--------GNTVYLMPPY 627 (965)
Q Consensus 558 ~~~l~~~L~~l~~~~~i~~v~-g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~--------~~~lR~~p~~ 627 (965)
++.+.+.|.++ +++..+. +.|.|+.+... ....+ ...|+..|+ +.||.+.|+ .+++|++ +
T Consensus 302 rd~l~~~l~~~---~g~~~~~~p~Ga~Y~~~~i-~~~~d----~~~f~~~Ll~~~gV~v~PG~~Fg~~~g~~~vRis--~ 371 (393)
T COG0436 302 RDLLVEALNEI---GGLSVVKPPEGAFYLFPKI-PELLD----SEEFAKKLLEEAGVAVVPGSGFGEPPGEGYVRLS--L 371 (393)
T ss_pred HHHHHHHHHhc---CCeeeccCCCeeEEEEeec-CCCCC----HHHHHHHHHHhCCEEEecccccCCCCCCCeEEEE--E
Confidence 66666666554 5577677 77998888755 11111 334555555 668999883 1589999 8
Q ss_pred ccCHHHHHHHHHhhhccc
Q psy8199 628 ILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 628 ~~t~~~i~~~~~~l~~~~ 645 (965)
..+.+.++++++++.+.+
T Consensus 372 ~~~~~~l~~a~~rl~~~~ 389 (393)
T COG0436 372 ATSEETLEEALRRLARFL 389 (393)
T ss_pred ecCHHHHHHHHHHHHHHH
Confidence 888899999998887644
|
|
| >PRK12928 lipoyl synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.7e-23 Score=218.97 Aligned_cols=229 Identities=20% Similarity=0.283 Sum_probs=181.4
Q ss_pred HHHHHhc-CCCchhHHHHHHHHHHHhcCCCeEEEeEeEeeccCCCCCCCCCCCCCCcCCCCcccccCCCHHHHHHHHHHH
Q psy8199 649 DEVINLF-NLPFNDLLFRAQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKA 727 (965)
Q Consensus 649 ~e~l~l~-~~~~~~l~~~a~~~~~~~~~g~~~~~~~~i~~~s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~ 727 (965)
.++..|+ +.++..++..|+..++...+++... +.+.+ |++|+++|.||+++. +. .+ .++++++++.++++
T Consensus 29 ~~~~~l~~~~~l~tv~~~A~~~~~~~~~~~~~~--tfv~i-s~gC~~~C~FCa~~~--g~---~~-~~~~eei~~~a~~~ 99 (290)
T PRK12928 29 ETVQRLVKQRRLHTICEEARCPNRGECYAQGTA--TFLIM-GSICTRRCAFCQVDK--GR---PM-PLDPDEPERVAEAV 99 (290)
T ss_pred HHHHHHHHcCCHHHHHHHhCCCcccccCCCCEE--EEEEe-cccccCcCCCCCccC--CC---CC-CCCHHHHHHHHHHH
Confidence 3445555 4478999999999988887533222 22334 999999999999886 22 23 38999999999999
Q ss_pred HHCCCCEEEEeeccCC-CCcccHHHHHHHHHHHHhcC--cEeEE-ecCCC--CHHHHHHHHHhCCCeEeccCCCCHHHHh
Q psy8199 728 KSDGATRFCMGAAWRE-LKDRDLDNIENMICEVKKIG--LETCL-TLGML--NENQAYRLKKVGLDYYNHNLDTSPKLYG 801 (965)
Q Consensus 728 ~~~g~~~i~l~~g~~~-~~~~~~~~~~~~~~~i~~~~--~~i~~-~~~~~--~~e~l~~Lk~aG~~~i~i~~es~~~~~~ 801 (965)
.+.|+++++|+++..+ +.+.+.+++.++++.|++.. +.+.. +...+ ..+.++.|+++|.+.+.+++||++++++
T Consensus 100 ~~~G~keivitg~~~dDl~d~g~~~~~ell~~Ik~~~p~~~I~~ltp~~~~~~~e~L~~l~~Ag~~i~~hnlEt~~~vl~ 179 (290)
T PRK12928 100 AALGLRYVVLTSVARDDLPDGGAAHFVATIAAIRARNPGTGIEVLTPDFWGGQRERLATVLAAKPDVFNHNLETVPRLQK 179 (290)
T ss_pred HHCCCCEEEEEEEeCCcccccCHHHHHHHHHHHHhcCCCCEEEEeccccccCCHHHHHHHHHcCchhhcccCcCcHHHHH
Confidence 9999999999998653 23455788999999999753 44433 33333 5789999999999999999999999999
Q ss_pred cccCCCCHHHHHHHHHHHHHcC--CceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeecccccc--CCCCCCCCCCC
Q psy8199 802 DIISTRDYENRLNTLKNVRNVG--INICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQI--KGTPLYGSSIL 877 (965)
Q Consensus 802 ~i~~~~~~~~~~~~i~~~~~~G--i~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~--~gT~l~~~~~~ 877 (965)
.|++..+++++++.++.+++.| +.+++++|+|+|||.+|+.++++.+++++ ++.+++..|.+. ...|...+ .
T Consensus 180 ~m~r~~t~e~~le~l~~ak~~gp~i~~~s~iIvG~GET~ed~~etl~~Lrel~--~d~v~i~~Yl~p~~~~~~v~~~--~ 255 (290)
T PRK12928 180 AVRRGADYQRSLDLLARAKELAPDIPTKSGLMLGLGETEDEVIETLRDLRAVG--CDRLTIGQYLRPSLAHLPVQRY--W 255 (290)
T ss_pred HhCCCCCHHHHHHHHHHHHHhCCCceecccEEEeCCCCHHHHHHHHHHHHhcC--CCEEEEEcCCCCCccCCceeec--c
Confidence 9999999999999999999999 99999999999999999999999999999 999999888763 34555554 3
Q ss_pred CHHHHHHHHHHHH
Q psy8199 878 DPLEFIRTIAVAR 890 (965)
Q Consensus 878 ~~~~~~~~ia~~R 890 (965)
+++++.+.-.++.
T Consensus 256 ~~~~f~~~~~~~~ 268 (290)
T PRK12928 256 TPEEFEALGQIAR 268 (290)
T ss_pred CHHHHHHHHHHHH
Confidence 4554444444433
|
|
| >PRK05937 8-amino-7-oxononanoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.9e-22 Score=225.47 Aligned_cols=318 Identities=13% Similarity=0.150 Sum_probs=214.1
Q ss_pred ccccccccchhccCCCC-CHHHHHHHHHHHhhcc-------ccccCC----CCcHHHHHHHHHHHhhcCCCCCeEEEcCC
Q psy8199 255 RYLDAISSWWVNLFGHS-NSYINKALKNQLNKLE-------HVMLSN----LTHKPVIKLSEKLSSLTQYKLGHCFYGSD 322 (965)
Q Consensus 255 ~ylD~~~~~~~~~lGh~-~p~v~~av~~~~~~~~-------~~~~~~----~~~~~~~~la~~l~~~~~~~~~~v~~~~s 322 (965)
+++||.|+ .+||++ +|.+.+++.+++.+.. ...... +.++...+++++++++++ .+.+++.+|
T Consensus 5 ~~~~~~s~---~YL~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~gs~~~~g~~~~~~~~e~~la~~~~--~~~~l~~~s 79 (370)
T PRK05937 5 LSIDFVTN---DFLGFSRSDTLVHEVEKRYRLYCRQFPHAQLGYGGSRAILGPSSLLDDLEHKIAHFHG--APEAFIVPS 79 (370)
T ss_pred ceEEeECC---CccCCCCCHHHHHHHHHHHHHhccccCCCCCCCCCcCcccCChHHHHHHHHHHHHHhC--CCeEEEECC
Confidence 46666654 557765 8999999999887741 111111 256788999999999996 367788899
Q ss_pred hhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhH
Q psy8199 323 GASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANE 402 (965)
Q Consensus 323 GseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (965)
|+.|+...+... .+++.+|+.+..+|++...++.... .. . ++++
T Consensus 80 G~~a~~~~~~~~---------~~~~d~ii~d~~~H~sv~~~~~~~~--~~----------~--~~~~------------- 123 (370)
T PRK05937 80 GYMANLGLCAHL---------SSVTDYVLWDEQVHISVVYSLSVIS--GW----------H--QSFR------------- 123 (370)
T ss_pred hHHHHHHHHHHh---------CCCCCEEEEEhhhhHHHHHHHHHcC--Cc----------e--EEec-------------
Confidence 999986433322 2456789999999999877655421 00 0 1111
Q ss_pred HHHHHHHHHHHHHHhC---CCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEecccc-C-CCcccccccc
Q psy8199 403 IARCAIFDLEILLKKN---HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAV-G-CGRTGKFFAC 477 (965)
Q Consensus 403 ~~~~d~~~le~~l~~~---~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-g-~gr~G~~~~~ 477 (965)
.+|+++|++++++. .++..+|++++ +++++|.+.| +++|.++|+++|+++|+||+|+ | +|++|..+.
T Consensus 124 --~~d~~~l~~~l~~~~~~~~~~~~v~v~~-v~s~~G~i~p----l~eI~~l~~~~~~~livDea~~~G~~g~~g~g~~- 195 (370)
T PRK05937 124 --HNDLDHLESLLESCRQRSFGRIFIFVCS-VYSFKGTLAP----LEQIIALSKKYHAHLIVDEAHAMGIFGDDGKGFC- 195 (370)
T ss_pred --CCCHHHHHHHHHhhhccCCCcEEEEEec-CCCCCCCccC----HHHHHHHHHHcCCEEEEECCccccccCCCCCchH-
Confidence 14788899888743 13456788899 9999999998 9999999999999999999997 3 455554322
Q ss_pred cccC---CCcceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhccc--HHH
Q psy8199 478 EHAE---IWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDN--ILQ 552 (965)
Q Consensus 478 ~~~~---~~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~--~~~ 552 (965)
..++ +.+|+.||||++|+.+ +++++.+++.+.+... ..++. .+.+.+|++++++.++++.+.+.. ..+
T Consensus 196 ~~~~~~~~~~~~~tlsK~~g~~G---~~vl~~~~~~~~~~~~--~~~~~--~s~~~~~~~~~a~~aal~~l~~~~~~~~~ 268 (370)
T PRK05937 196 HSLGYENFYAVLVTYSKALGSMG---AALLSSSEVKQDLMLN--SPPLR--YSTGLPPHLLISIQVAYDFLSQEGELARK 268 (370)
T ss_pred HhhCCCCCcEEEEechhhhhcCc---eEEEcCHHHHHHHHHh--CCCCe--ecCCCCHHHHHHHHHHHHHHHhCcHHHHH
Confidence 1222 2367789999886521 3456666665555421 12222 344578888888889999886432 456
Q ss_pred HHHHHHHHHHHHHHcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEee----cCCEEEEeCCcc
Q psy8199 553 RISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRP----IGNTVYLMPPYI 628 (965)
Q Consensus 553 ~~~~~~~~l~~~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~----~~~~lR~~p~~~ 628 (965)
+++++.+++.+.|... .+ +....+.+. . . ....+.+.|.++||++.. ..+.+|++++..
T Consensus 269 ~l~~l~~~l~~~l~~~--~~--------~~~~~i~~~--~----~-~~~~~~~~L~~~gi~v~~~~~~~~~~iRis~~~~ 331 (370)
T PRK05937 269 QLFRLKEYFAQKFSSA--AP--------GCVQPIFLP--G----I-SEQELYSKLVETGIRVGVVCFPTGPFLRVNLHAF 331 (370)
T ss_pred HHHHHHHHHHHhcCCC--CC--------CCEEEEEeC--C----h-hHHHHHHHHHHCCeeEEeeCCCCCCEEEEEcCCC
Confidence 6667777776665431 01 111223332 1 1 134677888999998873 346899999999
Q ss_pred cCHHHHHHHHHhhhccc
Q psy8199 629 LNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 629 ~t~~~i~~~~~~l~~~~ 645 (965)
+|++|++++++.+.+.+
T Consensus 332 ~t~edid~l~~~L~~~~ 348 (370)
T PRK05937 332 NTEDEVDILVSVLATYL 348 (370)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 99999999999887644
|
|
| >cd02554 PseudoU_synth_RluF PseudoU_synth_RluF_like: Pseudouridine synthase, Escherichia coli RluF like | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.9e-24 Score=203.85 Aligned_cols=135 Identities=19% Similarity=0.162 Sum_probs=102.5
Q ss_pred EEEEECCCCCeeeeCCCCCcccHHHHHHHHCCcccCCCCccccccCCCCCceEEEeEeCHHHHHHHHHHHHcCCcCeEEE
Q psy8199 38 IIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYL 117 (965)
Q Consensus 38 ~lv~nKP~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~RLD~~tsGlll~a~~~~~~~~l~~~~~~~~~~K~Y~ 117 (965)
|+++|||+|++|++++. ...++.+.+.. ..++++|||||++||||||||+|++++++|++ +.+++.|+|+
T Consensus 2 y~~lnKP~G~l~s~~~~-~~~tv~~~l~~-------~~~~~~vgRLD~~tsGlll~t~dg~~~~~L~~--p~~~~~K~Y~ 71 (164)
T cd02554 2 YIAYNKPVGIDCTLERA-DEDNIIDFVNP-------PPRIFPIGRLDKDSEGLILLTNDGDLVNKILH--ADNNHEKEYL 71 (164)
T ss_pred EEEEECCCCcEeecCCC-CCCcHHHHhcC-------cCCEEEccCCCCCCeeEEEEEcCHHHHHHHhh--hhcCCCeEEE
Confidence 89999999999998754 35788888743 13689999999999999999999999999988 8889999999
Q ss_pred EEEcCccCCCc--eEeeccccCCCCCeeEEEccCCCCcceEEEEEEeEEeeccCCcEEEEEEEeCCCcccHHHHHHHHhC
Q psy8199 118 AMVWGIPKLNG--MINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLG 195 (965)
Q Consensus 118 a~v~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~s~~~~~~~tGr~hQIR~~~~~~g 195 (965)
|.|+|.++++. .+..++..+ + ..|.+..+... ++ ++++|.+.+||+||||+||+++|
T Consensus 72 V~v~~~l~~~~l~~l~~G~~~~-------------~---~~~~~~~v~~~----~~-~~l~i~l~eGr~~qIRrm~~~~G 130 (164)
T cd02554 72 VTVNKPITDEFIEGMSNGVVIL-------------G---TVTKPCKVERL----AK-DKFRIVLTQGLNRQIRRMCEALG 130 (164)
T ss_pred EEECCCCCHHHHHHHhCCCEEC-------------C---eEEcceEEEEC----CC-CEEEEEEECCcCHHHHHHHHHcC
Confidence 99999887642 122222111 1 12222222221 11 35999999999999999999999
Q ss_pred CceecCCC
Q psy8199 196 HGIVGDNL 203 (965)
Q Consensus 196 ~pi~gD~~ 203 (965)
+||+-=..
T Consensus 131 ~~V~~L~R 138 (164)
T cd02554 131 YRVTDLKR 138 (164)
T ss_pred CEEEEEEE
Confidence 99986443
|
This group is comprised of bacterial proteins similar to Escherichia coli RluF. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. E.coli RluF makes psi2604 in 23S RNA. psi2604 has only been detected in E. coli. It is absent from other eubacteria despite a precursor U at that site and from eukarya and archea which lack a precursor U at that site. |
| >PRK03317 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.8e-22 Score=226.07 Aligned_cols=323 Identities=12% Similarity=0.109 Sum_probs=214.8
Q ss_pred ccccccccchhccCCCCCHHHHHHHHHHHhh----ccccccCCCCcHHHHHHHHHHHhhcC--CCCCeEEEcCChhHHHH
Q psy8199 255 RYLDAISSWWVNLFGHSNSYINKALKNQLNK----LEHVMLSNLTHKPVIKLSEKLSSLTQ--YKLGHCFYGSDGASAVE 328 (965)
Q Consensus 255 ~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~----~~~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~~~sGseA~~ 328 (965)
..+|+..+ .++++ .+|.+++++.+++.. ...|.. .+..+.+..+++.+.+..+ .+.++|++|+|+++++.
T Consensus 27 ~~i~l~~~--~~~~~-~~~~~~~al~~~l~~~~~~~~~Y~~-~g~~~lr~aia~~~~~~~~~~~~~~~I~it~G~~~~l~ 102 (368)
T PRK03317 27 VPVRLNTN--ENPYP-PSPALVADIAEAVAEAAAGLNRYPD-RDAVALRADLAAYLTAQTGVGLTVENVWAANGSNEILQ 102 (368)
T ss_pred ceeEecCC--CCCCC-CCHHHHHHHHHHHhhhhhhhccCCC-CchHHHHHHHHHHhhhhccCCCChhhEEECCCHHHHHH
Confidence 46777666 34454 688999999988753 222221 1223445555555555433 45679999999999999
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHH
Q psy8199 329 VALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAI 408 (965)
Q Consensus 329 ~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 408 (965)
.+++.... +++.|++..++|+++...+...+ .....++..+.. . .|+
T Consensus 103 ~~~~~~~~--------~gd~v~v~~P~y~~~~~~~~~~g-------------~~~~~~~~~~~~-~-----------~d~ 149 (368)
T PRK03317 103 QLLQAFGG--------PGRTALGFVPSYSMHPIIARGTH-------------TEWVEGPRAADF-T-----------LDV 149 (368)
T ss_pred HHHHHhcC--------CCCEEEEeCCChHHHHHHHHhcC-------------CeeEEcccCCCC-C-----------CCH
Confidence 99987743 56789999999988743322211 112222211111 1 267
Q ss_pred HHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCccee-
Q psy8199 409 FDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL- 487 (965)
Q Consensus 409 ~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDiv- 487 (965)
+++++++.+...+ +.++++| +|++|.+.+ .++++++|+.+++++|+||+|++|++.|........+..|+++
T Consensus 150 ~~l~~~~~~~~~~-~i~l~~p--~NPtG~~~~----~~~l~~l~~~~~~~lI~DE~y~~~~~~~~~~~~~~~~~~~~~i~ 222 (368)
T PRK03317 150 DAAVAAIAEHRPD-VVFLTSP--NNPTGTALP----LDDVEAILDAAPGIVVVDEAYAEFRRSGTPSALTLLPEYPRLVV 222 (368)
T ss_pred HHHHHHHhccCCC-EEEEeCC--CCCCCCCCC----HHHHHHHHHHCCceEEEeCCchhhcccCCcCHHHHHHhCCCEEE
Confidence 8888888643222 3445555 899999886 6677777777789999999999997666544445555567877
Q ss_pred --eeccccC-CCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHH
Q psy8199 488 --CLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK-DNILQRISQDMKKITK 563 (965)
Q Consensus 488 --t~sK~l~-gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~-~~~~~~~~~~~~~l~~ 563 (965)
+|||+++ .| +|+|++++++++++.+.. ...+++.++++++++.++|+.... .+..++++++.+++.+
T Consensus 223 ~~SfSK~~g~~G-lRiG~~~~~~~~~~~l~~--------~~~~~~~s~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~ 293 (368)
T PRK03317 223 SRTMSKAFAFAG-GRLGYLAAAPAVVDALRL--------VRLPYHLSAVTQAAARAALRHADELLASVAALRAERDRVVA 293 (368)
T ss_pred EEechhhhccch-hhhhhhhCCHHHHHHHHh--------cCCCCCCCHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHH
Confidence 8999997 46 899999999999998865 124677899999999999964321 1122334445555555
Q ss_pred HHHcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecC--CEEEEeCCcccCHHHHHHHHHhh
Q psy8199 564 ALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG--NTVYLMPPYILNKNEIQHMTSAI 641 (965)
Q Consensus 564 ~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~--~~lR~~p~~~~t~~~i~~~~~~l 641 (965)
.|++. ++....+.|.++.+... .+ ...+.+.|.++||++.+.+ +++|++ ..+.++++.+++++
T Consensus 294 ~L~~~----g~~~~~~~~~~~~~~~~-~~-------~~~~~~~l~~~Gv~v~~~~~~~~iRi~---~~~~~~~~~~~~~l 358 (368)
T PRK03317 294 WLREL----GLRVAPSDANFVLFGRF-AD-------RHAVWQGLLDRGVLIRDVGIPGWLRVT---IGTPEENDAFLAAL 358 (368)
T ss_pred HHHHC----CCEeCCCCCcEEEEecc-CC-------HHHHHHHHHHCCEEEEeCCCCCeEEEe---cCCHHHHHHHHHHH
Confidence 55442 34445566776655221 11 3467788999999998754 699999 34778899888888
Q ss_pred hccc
Q psy8199 642 FQTF 645 (965)
Q Consensus 642 ~~~~ 645 (965)
.+.+
T Consensus 359 ~~~~ 362 (368)
T PRK03317 359 AEVL 362 (368)
T ss_pred HHHH
Confidence 7654
|
|
| >PRK10475 23S rRNA pseudouridine synthase F; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.1e-24 Score=223.76 Aligned_cols=137 Identities=22% Similarity=0.196 Sum_probs=104.6
Q ss_pred EecCcEEEEECCCCCeeeeCCCCCcccHHHHHHHHCCcccCCCCccccccCCCCCceEEEeEeCHHHHHHHHHHHHcCCc
Q psy8199 33 YEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIV 112 (965)
Q Consensus 33 ~e~~~~lv~nKP~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~RLD~~tsGlll~a~~~~~~~~l~~~~~~~~~ 112 (965)
+||++|+++|||+|++|++.+.. ..++++.+... .++++|||||++||||||||+|++++++|++ +.+.+
T Consensus 64 ~ed~~~lvlnKP~G~~~~~~~~~-~~tv~~~l~~~-------~~l~~VgRLDrdTsGLLLlT~dg~~~~~L~~--p~~~i 133 (290)
T PRK10475 64 AEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNHS-------KRVFPIGRLDKDSQGLIFLTNHGDLVNKILR--AGNDH 133 (290)
T ss_pred cCCCeEEEEECCCCCCcCCCCCC-CCcHHHHhhcc-------ccccccccCCCCCcceEEEecCHHHHHHhhC--cCCCC
Confidence 46788999999999999976653 57888877532 2678999999999999999999999999998 78899
Q ss_pred CeEEEEEEcCccCCCc--eEeeccccCCCCCeeEEEccCCCCcceEEEEEEeEEeeccCCcEEEEEEEeCCCcccHHHHH
Q psy8199 113 QRKYLAMVWGIPKLNG--MINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVH 190 (965)
Q Consensus 113 ~K~Y~a~v~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~s~~~~~~~tGr~hQIR~~ 190 (965)
+|+|+|+|.|.++++. .+..++..+.. ..+++.. +.+ +.++++|+|.+||+||||+|
T Consensus 134 ~K~Y~v~V~g~~~~~~l~~l~~Gv~l~~~-----------~~~~~~v--~~~--------~~~~~~i~l~eGk~rqIRrm 192 (290)
T PRK10475 134 EKEYLVTVDKPITDEFIRGMGAGVPILGT-----------VTKKCKV--KKE--------APFVFRITLVQGLNRQIRRM 192 (290)
T ss_pred CeEEEEEECCCCCHHHHHHHhCCcEECCE-----------EecceEE--Eec--------CCcEEEEEEECCcCHHHHHH
Confidence 9999999999886542 22222222100 0112111 111 13679999999999999999
Q ss_pred HHHhCCceec
Q psy8199 191 MQWLGHGIVG 200 (965)
Q Consensus 191 ~~~~g~pi~g 200 (965)
|+++|+||+-
T Consensus 193 ~~~~G~~V~~ 202 (290)
T PRK10475 193 CEHFGYEVTK 202 (290)
T ss_pred HHHcCCEEeE
Confidence 9999999974
|
|
| >PRK05481 lipoyl synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.6e-22 Score=212.55 Aligned_cols=208 Identities=21% Similarity=0.314 Sum_probs=172.2
Q ss_pred ccHHHHHHhc-CCCchhHHHHHHHHHHHh-cCCCeEEEeEeEeeccCCCCCCCCCCCCCCcCCCCcccccCCCHHHHHHH
Q psy8199 646 NELDEVINLF-NLPFNDLLFRAQKVHRKY-FDANEIELAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITA 723 (965)
Q Consensus 646 ~~~~e~l~l~-~~~~~~l~~~a~~~~~~~-~~g~~~~~~~~i~~~s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~ 723 (965)
.+..+++.|+ ..++..++..|+.+++.. +.++++. .+.+ |++|+++|.||+++... . +.+++++|+++
T Consensus 19 ~~~~~~~~l~~~~~l~~~~~~a~~~~~~~~~~~~~~~---fi~i-s~GC~~~C~FC~i~~~r--~----~s~~~eeI~~e 88 (289)
T PRK05481 19 EEYTEIKKLLRELGLHTVCEEASCPNIGECWSRGTAT---FMIL-GDICTRRCPFCDVATGR--P----LPLDPDEPERV 88 (289)
T ss_pred hhHHHHHHHHHhCChHHHHHhhCCCcchhccCCCeEE---EEEe-cccccCCCCCceeCCCC--C----CCCCHHHHHHH
Confidence 3566777887 457899999999998833 2255433 2335 99999999999988632 1 34889999999
Q ss_pred HHHHHHCCCCEEEEeeccCC-CCcccHHHHHHHHHHHHhc--CcEeEE--ecCCCCHHHHHHHHHhCCCeEeccCCCCHH
Q psy8199 724 AQKAKSDGATRFCMGAAWRE-LKDRDLDNIENMICEVKKI--GLETCL--TLGMLNENQAYRLKKVGLDYYNHNLDTSPK 798 (965)
Q Consensus 724 ~~~~~~~g~~~i~l~~g~~~-~~~~~~~~~~~~~~~i~~~--~~~i~~--~~~~~~~e~l~~Lk~aG~~~i~i~~es~~~ 798 (965)
++++.+.|+++++|+++..+ ....+.+.+.++++.|++. ++.+.. .......+.+..|+++|.+.+.+++|++++
T Consensus 89 a~~l~~~G~kEI~L~gg~~~d~~~~~~~~l~~Ll~~I~~~~p~irI~~l~~~~~~~~e~L~~l~~ag~~i~~~~~ets~~ 168 (289)
T PRK05481 89 AEAVARMGLKYVVITSVDRDDLPDGGAQHFAETIRAIRELNPGTTIEVLIPDFRGRMDALLTVLDARPDVFNHNLETVPR 168 (289)
T ss_pred HHHHHHCCCCEEEEEEeeCCCcccccHHHHHHHHHHHHhhCCCcEEEEEccCCCCCHHHHHHHHhcCcceeeccccChHH
Confidence 99999999999999999753 1223567899999999873 344332 223335689999999999999999999999
Q ss_pred HHhcccCCCCHHHHHHHHHHHHHc--CCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccccc
Q psy8199 799 LYGDIISTRDYENRLNTLKNVRNV--GINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQ 865 (965)
Q Consensus 799 ~~~~i~~~~~~~~~~~~i~~~~~~--Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P 865 (965)
+++.|+++++++++++.++.++++ |+.+++++|+|+|||+||+.++++++++++ ++.+.+..|.|
T Consensus 169 vlk~m~r~~t~e~~le~i~~ar~~~pgi~~~t~~IvGfGET~ed~~~tl~~lrel~--~d~v~if~Ys~ 235 (289)
T PRK05481 169 LYKRVRPGADYERSLELLKRAKELHPGIPTKSGLMVGLGETDEEVLEVMDDLRAAG--VDILTIGQYLQ 235 (289)
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHhCCCCeEeeeeEEECCCCHHHHHHHHHHHHhcC--CCEEEEEccCC
Confidence 999999999999999999999999 999999999999999999999999999999 99999999998
|
|
| >PTZ00413 lipoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.8e-22 Score=209.56 Aligned_cols=175 Identities=17% Similarity=0.291 Sum_probs=154.4
Q ss_pred EeEeeccCCCCCCCCCCCCCCcCCCCcccccCCCHHHHHHHHHHHHHCCCCEEEEeeccC-CCCcccHHHHHHHHHHHHh
Q psy8199 683 VLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWR-ELKDRDLDNIENMICEVKK 761 (965)
Q Consensus 683 ~~i~~~s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~l~~g~~-~~~~~~~~~~~~~~~~i~~ 761 (965)
+.|-. .+.|+.+|.||+++.... ...++++|+.+.++...++|++.++++++.. ++.+...+.+.+.++.|++
T Consensus 151 Tfmil-G~~CTr~C~FCaqstg~~-----p~~lD~eEp~~vA~av~~~Gl~~~VVTSv~RDDL~D~ga~~~a~~I~~Ir~ 224 (398)
T PTZ00413 151 TIMVM-GDHCTRGCRFCSVKTSRK-----PPPLDPNEPEKVAKAVAEMGVDYIVMTMVDRDDLPDGGASHVARCVELIKE 224 (398)
T ss_pred Eeeec-CCCCCCCCCCCCCCCCCC-----CCCCCHHHHHHHHHHHHHcCCCEEEEEEEcCCCCChhhHHHHHHHHHHHHc
Confidence 33434 899999999999986321 2458999999999999999999888877754 4667889999999999997
Q ss_pred --cCcEeEEecCCC--CHHHHHHHHHhCCCeEeccCCCCHHHHhcccC-CCCHHHHHHHHHHHHHc---CCceeeeEEEe
Q psy8199 762 --IGLETCLTLGML--NENQAYRLKKVGLDYYNHNLDTSPKLYGDIIS-TRDYENRLNTLKNVRNV---GINICCGGIIG 833 (965)
Q Consensus 762 --~~~~i~~~~~~~--~~e~l~~Lk~aG~~~i~i~~es~~~~~~~i~~-~~~~~~~~~~i~~~~~~---Gi~v~~~~i~G 833 (965)
.++.+++..+.+ +++.++.|++||++.+++++||++++|.+|++ .++|++.+++++.+++. |+.+++++|+|
T Consensus 225 ~~p~~~IevligDf~g~~e~l~~L~eAG~dvynHNLETv~rLyp~VRt~~atYe~sLe~Lr~AKe~f~~gi~tcSGiIVG 304 (398)
T PTZ00413 225 SNPELLLEALVGDFHGDLKSVEKLANSPLSVYAHNIECVERITPYVRDRRASYRQSLKVLEHVKEFTNGAMLTKSSIMLG 304 (398)
T ss_pred cCCCCeEEEcCCccccCHHHHHHHHhcCCCEEecccccCHhHHHHHccCcCCHHHHHHHHHHHHHHhcCCceEeeeeEec
Confidence 368888888866 99999999999999999999999999999996 68999999999999987 99999999999
Q ss_pred cCCCHHHHHHHHHHHHhcCCCCCceeeccccc
Q psy8199 834 LSESRDQRAELIFQLANLNPYPESVPINNLVQ 865 (965)
Q Consensus 834 l~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P 865 (965)
||||++|++++++.|++++ ++.+++..|..
T Consensus 305 LGET~eEvie~m~dLrelG--VDivtIGQYL~ 334 (398)
T PTZ00413 305 LGETEEEVRQTLRDLRTAG--VSAVTLGQYLQ 334 (398)
T ss_pred CCCCHHHHHHHHHHHHHcC--CcEEeeccccC
Confidence 9999999999999999999 99999955543
|
|
| >PLN02483 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.1e-21 Score=224.00 Aligned_cols=327 Identities=14% Similarity=0.147 Sum_probs=220.0
Q ss_pred cCCcccccccccchhccCCCC--CHHHHHHHHHHHhhcccc---cc-CCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChh
Q psy8199 251 FSGKRYLDAISSWWVNLFGHS--NSYINKALKNQLNKLEHV---ML-SNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGA 324 (965)
Q Consensus 251 ~dG~~ylD~~~~~~~~~lGh~--~p~v~~av~~~~~~~~~~---~~-~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGs 324 (965)
.+++++|+|.|. +.||.+ ++.+.+++.+++++.+.. +. ..++++...++.++++++++ .+..++.++|+
T Consensus 97 ~~~~~~~n~~s~---~YLgl~~~~~~~~~~~~~ai~~~g~~~~~sr~~~g~~~~~~ele~~lA~~~g--~~~ai~~~~G~ 171 (489)
T PLN02483 97 TKTRRCLNLGSY---NYLGFAAADEYCTPRVIESLKKYSASTCSSRVDGGTTKLHRELEELVARFVG--KPAAIVFGMGY 171 (489)
T ss_pred CCCceEEEeecC---CccCcCCCCHHHHHHHHHHHHHhCCCCCccccccCCcHHHHHHHHHHHHHhC--CCcEEEECCHH
Confidence 357889999875 667775 677888888888775321 11 12468889999999999996 34455557788
Q ss_pred HHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHH
Q psy8199 325 SAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIA 404 (965)
Q Consensus 325 eA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (965)
.++..++.... .+++.|++.++.|++.. .+....| ..+..++.
T Consensus 172 ~an~~~i~al~--------~~Gd~Vi~d~~~h~s~~-~~~~~~G------------a~v~~~~~---------------- 214 (489)
T PLN02483 172 ATNSTIIPALI--------GKGGLIISDSLNHNSIV-NGARGSG------------ATIRVFQH---------------- 214 (489)
T ss_pred HHHHHHHHHhC--------CCCCEEEEcchhhHHHH-HHHHHcC------------CeEEEEeC----------------
Confidence 88887776543 25577777776665543 2222222 12223332
Q ss_pred HHHHHHHHHHHHhC----------CCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccC--CCccc
Q psy8199 405 RCAIFDLEILLKKN----------HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVG--CGRTG 472 (965)
Q Consensus 405 ~~d~~~le~~l~~~----------~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg--~gr~G 472 (965)
+|.++|++++++. +....+|++|+ +.++.|.+.+ +++|.++|++||+++|+||+|+- +|++|
T Consensus 215 -~d~~~le~~l~~~i~~~~p~t~~p~~k~livve~-v~s~~G~~~~----l~~I~~la~~~~~~livDEa~s~g~~G~~G 288 (489)
T PLN02483 215 -NTPSHLEEVLREQIAEGQPRTHRPWKKIIVIVEG-IYSMEGELCK----LPEIVAVCKKYKAYVYLDEAHSIGAVGKTG 288 (489)
T ss_pred -CCHHHHHHHHHhhhhccccccccCCceEEEEECC-CCCCCCcccC----HHHHHHHHHHcCCEEEEECcCccCccCCCC
Confidence 2445555555421 11246889999 8999998887 99999999999999999999971 34455
Q ss_pred ccccccccCCCc---cee--eeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCC--CCCHHHHHHHHHHHHHH
Q psy8199 473 KFFACEHAEIWP---DFL--CLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSY--SGNPLACCAALATLEIF 545 (965)
Q Consensus 473 ~~~~~~~~~~~p---Div--t~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~--~~~~~~~aaa~a~L~~~ 545 (965)
.. ..+++++.| |++ +|||++++ +.|++++++++++.+.. ..++.++ +.+|..++++.++|+.+
T Consensus 289 ~g-~~~~~~v~~~~~dI~~~SfSKs~g~---~GG~i~~~~~li~~l~~------~~~~~~~~~~~~p~~~~~~~aaL~~l 358 (489)
T PLN02483 289 RG-VCELLGVDPADVDIMMGTFTKSFGS---CGGYIAGSKELIQYLKR------TCPAHLYATSMSPPAVQQVISAIKVI 358 (489)
T ss_pred Cc-hHHhcCCCcccCcEEEEecchhccc---CceEEEcCHHHHHHHHH------hCccccccCCcCHHHHHHHHHHHHHH
Confidence 43 445666643 666 89998865 23788899999998875 1233333 34677777888889876
Q ss_pred hcc-------cHHHHHHHHHHHHHHHHHcccCCCceeeee-ceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec
Q psy8199 546 NKD-------NILQRISQDMKKITKALTSLITHPKIINFR-QKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI 617 (965)
Q Consensus 546 ~~~-------~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~-g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~ 617 (965)
..+ ...++++++.+++++.|+++ ++.... ..+.++.+.+. + ......+.+.|+++||.+.+.
T Consensus 359 ~~~~g~~~~~~~~~~l~~~~~~l~~~L~~~----G~~v~~~~~sp~~~l~l~--~----~~~~~~~~~~Ll~~GI~v~~~ 428 (489)
T PLN02483 359 LGEDGTNRGAQKLAQIRENSNFFRSELQKM----GFEVLGDNDSPVMPIMLY--N----PAKIPAFSRECLKQNVAVVVV 428 (489)
T ss_pred HhCccccchHHHHHHHHHHHHHHHHHHHHC----CCcccCCCCCCEEEEEEC--C----HHHHHHHHHHHHHCCcEEeee
Confidence 522 24667888888999998875 222111 12334444433 1 112346888899999998742
Q ss_pred --------CCEEEEeCCcccCHHHHHHHHHhhhccc
Q psy8199 618 --------GNTVYLMPPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 618 --------~~~lR~~p~~~~t~~~i~~~~~~l~~~~ 645 (965)
.+.+||+++..+++++++++++++.+..
T Consensus 429 ~fp~~p~~~~~vRi~isa~~t~edId~~l~~L~~~~ 464 (489)
T PLN02483 429 GFPATPLLLARARICISASHSREDLIKALEVISEVG 464 (489)
T ss_pred CCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 1579999999999999999999987643
|
|
| >TIGR00093 pseudouridine synthase | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-23 Score=196.16 Aligned_cols=109 Identities=19% Similarity=0.264 Sum_probs=88.8
Q ss_pred cccCCCCCceEEEeEeCHHHHHHHHHHHHcCCcCeEEEEEEcCccCCCceEeeccccCCCCCeeEEEccCCCCcceEEEE
Q psy8199 80 VHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYY 159 (965)
Q Consensus 80 v~RLD~~tsGlll~a~~~~~~~~l~~~~~~~~~~K~Y~a~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~ 159 (965)
|||||++||||||||||+++++.|++ ++++++|+|+|+|.|.++++. +. .+. . ...+ .+++.+.+.|
T Consensus 1 v~RLD~~TSGlll~akd~~~~~~L~~--~~~~i~K~Y~a~v~g~~~~~~-~~-~~~----~--g~~~---~~~~~~~~~~ 67 (128)
T TIGR00093 1 AGRLDRDSEGLLLLTNDGELVHRLTH--PGHHCEKTYLVTVEGPVTDED-LE-ALR----K--GVQL---EDGPTKPAKL 67 (128)
T ss_pred CCCCCCCCEEEEEEEeCHHHHHHHhC--CCCCCCeEEEEEECCCCCHHH-HH-HHh----C--CeEE---CCcEEeeeEE
Confidence 79999999999999999999999998 889999999999999886543 11 111 0 0111 1345677888
Q ss_pred EEeEEeeccCCcEEEEEEEeCCCcccHHHHHHHHhCCceecCCCCC
Q psy8199 160 ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYG 205 (965)
Q Consensus 160 ~~~~~~~~~~~~~s~~~~~~~tGr~hQIR~~~~~~g~pi~gD~~~~ 205 (965)
+++... .+.++++|+|.|||+||||+||+++||||+||..+.
T Consensus 68 ~~l~~~----~~~~~l~~~l~tGR~HQIR~~~~~lG~pI~g~~R~~ 109 (128)
T TIGR00093 68 EVITEP----GFPTWLRITLSEGRNRQVRRMFAAVGFPVLRLHRVR 109 (128)
T ss_pred EEEccC----CCceEEEEEEeCCCCHHHHHHHHHcCCeEeEEEEEE
Confidence 888653 456899999999999999999999999999999885
|
This model identifies panels of pseudouridine synthase enzymes that RNA modifications involved in maturing the protein translation apparatus. Counts per genome vary: two in Staphylococcus aureus, three in Pseudomonas putida, four in E. coli, etc. |
| >KOG1359|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.2e-21 Score=191.65 Aligned_cols=322 Identities=16% Similarity=0.189 Sum_probs=233.3
Q ss_pred cccccccccchhccCCCC-CHHHHHHHHHHHhhccc----cccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHH
Q psy8199 254 KRYLDAISSWWVNLFGHS-NSYINKALKNQLNKLEH----VMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVE 328 (965)
Q Consensus 254 ~~ylD~~~~~~~~~lGh~-~p~v~~av~~~~~~~~~----~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~ 328 (965)
+.+|.|+++ ++||.+ ||+|++|-.+++++.+. +-+..++......|..+++++. +.+..++.+|+..||.
T Consensus 67 k~ilnFcaN---nYLGLsshPeii~a~~~aleeyGaGlssvrfIcGtq~iHk~LE~kiAqfh--~rED~ilypscfdANa 141 (417)
T KOG1359|consen 67 KKILNFCAN---NYLGLSSHPEIINAGQKALEEYGAGLSSVRFICGTQDIHKLLESKIAQFH--GREDTILYPSCFDANA 141 (417)
T ss_pred cceeeeccc---ccccccCChHHHHHHHHHHHHhCCCccceeEEecchHHHHHHHHHHHHHh--CCCceEEeccccccch
Confidence 578998875 779975 99999999999988532 2233467788899999999998 5788999999999999
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHH
Q psy8199 329 VALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAI 408 (965)
Q Consensus 329 ~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 408 (965)
.++.+... +.+ -+..|.--|.+.+....+.- .+.+.|+
T Consensus 142 g~feail~--------ped-AvfSDeLNhASIIdGirLck---------------------------------ry~h~dv 179 (417)
T KOG1359|consen 142 GAFEAILT--------PED-AVFSDELNHASIIDGIRLCK---------------------------------RYRHVDV 179 (417)
T ss_pred HHHHHhcC--------hhh-hhhccccccchhhhhhHHHh---------------------------------hhccchh
Confidence 99886632 333 33334455666443332221 1122467
Q ss_pred HHHHHHHHhC-CCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEecccc-C-CCcccccccccccCC--C
Q psy8199 409 FDLEILLKKN-HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAV-G-CGRTGKFFACEHAEI--W 483 (965)
Q Consensus 409 ~~le~~l~~~-~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-g-~gr~G~~~~~~~~~~--~ 483 (965)
.+++..+.+. ..+...|+.+. +.++.|.+.| |++|.+|+++||.||++||.+. | ||.+|. +.-+.+|+ .
T Consensus 180 ~~l~~~l~~a~k~r~klv~TDg-~FSMDGdiaP----l~ei~~La~kYgaLlfiDecHaTgf~G~tGr-Gt~E~~~vm~~ 253 (417)
T KOG1359|consen 180 FDLEHCLISACKMRLKLVVTDG-VFSMDGDIAP----LEEISQLAKKYGALLFIDECHATGFFGETGR-GTAEEFGVMGD 253 (417)
T ss_pred HHHHHHHHHhhhheEEEEEecc-eeccCCCccc----HHHHHHHHHhcCcEEEEeecccceeecCCCC-ChHHHhCCCCc
Confidence 7777666543 45788999999 9999999999 9999999999999999999975 3 344443 34566775 5
Q ss_pred ccee--eeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHH-hcccHHHHHHHHHHH
Q psy8199 484 PDFL--CLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIF-NKDNILQRISQDMKK 560 (965)
Q Consensus 484 pDiv--t~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~-~~~~~~~~~~~~~~~ 560 (965)
+|++ |+||++||. .-|++.+++++++.+++ +.+++.++.+. +|.....+.++++.+ .+....++...+.++
T Consensus 254 vdiinsTLgKAlGga--~GGyttgp~~li~llrq--r~RpylFSnsl--ppavV~~a~ka~dllm~s~~~i~~~~a~~qr 327 (417)
T KOG1359|consen 254 VDIINSTLGKALGGA--SGGYTTGPKPLISLLRQ--RSRPYLFSNSL--PPAVVGMAAKAYDLLMVSSKEIQSRQANTQR 327 (417)
T ss_pred ceehhhhhhhhhcCC--CCCCccCChhHHHHHHh--cCCceeecCCC--ChhhhhhhHHHHHHHHhhHHHHHHHHHHHHH
Confidence 7776 899999872 45789999999999987 56777766655 444445555666654 455678889999999
Q ss_pred HHHHHHcccCCCceeeeecee-EEEEEEEeecCccchhhHHHHHHHHHHHcCcEEee-------cC-CEEEEeCCcccCH
Q psy8199 561 ITKALTSLITHPKIINFRQKG-MIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRP-------IG-NTVYLMPPYILNK 631 (965)
Q Consensus 561 l~~~L~~l~~~~~i~~v~g~G-~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~-------~~-~~lR~~p~~~~t~ 631 (965)
+++.++.. ++. +.|.. .+..+.+. | ...+.++.+.|+++|+++.. .+ ..+|+..+..+++
T Consensus 328 fr~~me~a----Gft-Isg~~hPI~pv~lG--d----a~lA~~~ad~lLk~Gi~Vigfs~PvVP~gkariRVqiSAaHt~ 396 (417)
T KOG1359|consen 328 FREFMEAA----GFT-ISGASHPICPVMLG--D----ARLASKMADELLKRGIYVIGFSYPVVPKGKARIRVQISAAHTE 396 (417)
T ss_pred HHHHHHhc----Cce-ecCCCCCccceecc--c----HHHHHHHHHHHHhcCceEEeecCCcCCCCceEEEEEEehhcCH
Confidence 99988653 322 22211 23333332 3 45677889999999998852 22 5899999999999
Q ss_pred HHHHHHHHhhhccc
Q psy8199 632 NEIQHMTSAIFQTF 645 (965)
Q Consensus 632 ~~i~~~~~~l~~~~ 645 (965)
++|+++++++.++.
T Consensus 397 edid~~i~Af~~vg 410 (417)
T KOG1359|consen 397 EDIDRLIEAFSEVG 410 (417)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887643
|
|
| >TIGR00510 lipA lipoate synthase | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-21 Score=207.30 Aligned_cols=199 Identities=18% Similarity=0.259 Sum_probs=164.6
Q ss_pred EeEeeccCCCCCCCCCCCCCCcCCCCcccccCCCHHHHHHHHHHHHHCCCCEEEEeeccCC-CCcccHHHHHHHHHHHHh
Q psy8199 683 VLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRE-LKDRDLDNIENMICEVKK 761 (965)
Q Consensus 683 ~~i~~~s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~l~~g~~~-~~~~~~~~~~~~~~~i~~ 761 (965)
+.|.+ +++|+.+|.||+++...++. + .+++++.++++.+.+.|+++++|+++..+ +.+.+.+.+.++++.|++
T Consensus 65 tfm~i-~~gC~~~C~FC~v~~~rg~~----~-~~~eei~~~a~~~~~~GlkevvLTsv~~ddl~d~g~~~l~~li~~I~~ 138 (302)
T TIGR00510 65 TFMIL-GDICTRRCPFCDVAHGRNPL----P-PDPEEPAKLAETIKDMGLKYVVITSVDRDDLEDGGASHLAECIEAIRE 138 (302)
T ss_pred EEEec-CcCcCCCCCcCCccCCCCCC----C-CCHHHHHHHHHHHHHCCCCEEEEEeecCCCcccccHHHHHHHHHHHHh
Confidence 34445 99999999999987532221 2 47899999999999999999999998653 334557889999999987
Q ss_pred c--CcEeEEecC--CCCHHHHHHHHHhCCCeEeccCCCCHHHHhcccCCCCHHHHHHHHHHHHHc--CCceeeeEEEecC
Q psy8199 762 I--GLETCLTLG--MLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNV--GINICCGGIIGLS 835 (965)
Q Consensus 762 ~--~~~i~~~~~--~~~~e~l~~Lk~aG~~~i~i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~--Gi~v~~~~i~Gl~ 835 (965)
. ++.+.+... .-+.+.++.|+++|++.+.+++||.+++++.+++.++++++++.++.+++. |+.+++++|+|+|
T Consensus 139 ~~p~i~Ievl~~d~~g~~e~l~~l~~aG~dv~~hnlEt~~~l~~~vrr~~t~e~~Le~l~~ak~~~pgi~~~TgiIVGlG 218 (302)
T TIGR00510 139 KLPNIKIETLVPDFRGNIAALDILLDAPPDVYNHNLETVERLTPFVRPGATYRWSLKLLERAKEYLPNLPTKSGIMVGLG 218 (302)
T ss_pred cCCCCEEEEeCCcccCCHHHHHHHHHcCchhhcccccchHHHHHHhCCCCCHHHHHHHHHHHHHhCCCCeecceEEEECC
Confidence 4 344433221 126889999999999999999999999999999999999999999999998 8999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCCceeecccccc--CCCCCCCCCCCCHHHHHHHHHHH
Q psy8199 836 ESRDQRAELIFQLANLNPYPESVPINNLVQI--KGTPLYGSSILDPLEFIRTIAVA 889 (965)
Q Consensus 836 et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~--~gT~l~~~~~~~~~~~~~~ia~~ 889 (965)
||+||+.++++.|++++ ++.+++..|+.. +++|+..+..+...+.++.+|..
T Consensus 219 ETeee~~etl~~Lrelg--~d~v~igqYl~p~~~~~~v~~~~~p~~f~~~~~~a~~ 272 (302)
T TIGR00510 219 ETNEEIKQTLKDLRDHG--VTMVTLGQYLRPSRRHLPVKRYVSPEEFDYYRSVALE 272 (302)
T ss_pred CCHHHHHHHHHHHHhcC--CCEEEeecccCCCCCCCccccCCCHHHHHHHHHHHHH
Confidence 99999999999999999 999998888654 67888887766666666666553
|
The family shows strong sequence conservation. |
| >cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I) | Back alignment and domain information |
|---|
Probab=99.88 E-value=1e-20 Score=212.41 Aligned_cols=325 Identities=19% Similarity=0.171 Sum_probs=218.7
Q ss_pred cccccccccchhccCCCC-CHHHHHHHHHHHhhcccc----ccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHH
Q psy8199 254 KRYLDAISSWWVNLFGHS-NSYINKALKNQLNKLEHV----MLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVE 328 (965)
Q Consensus 254 ~~ylD~~~~~~~~~lGh~-~p~v~~av~~~~~~~~~~----~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~ 328 (965)
+.||.|+++ .+|||. ||+|++|+++++++.... .......+...++.+.++++++ .+..++++||++++.
T Consensus 1 ~~~~~~~~~---~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~--~~~~iv~~sg~~a~~ 75 (349)
T cd06454 1 KKVLNFCSN---DYLGLANHPEVIEAAKEALDKYGVGAGGSRLISGTSDLHEELEEELAEFHG--KEAALVFSSGYAAND 75 (349)
T ss_pred CCceecccC---CccccCCCHHHHHHHHHHHHHhCCCCCCcCeecCCchHHHHHHHHHHHHhC--CCCEEEeccHHHHHH
Confidence 468888775 679998 999999999999874321 1122457788999999999986 345777889999999
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHH
Q psy8199 329 VALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAI 408 (965)
Q Consensus 329 ~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 408 (965)
.+++.+.. ++++|++.++.| ..........+ .....++. .|.
T Consensus 76 ~~~~~~~~--------~gd~Vl~~~~~~-~~~~~~~~~~g------------~~~~~~~~-----------------~~~ 117 (349)
T cd06454 76 GVLSTLAG--------KGDLIISDSLNH-ASIIDGIRLSG------------AKKRIFKH-----------------NDM 117 (349)
T ss_pred HHHHHhcC--------CCCEEEEehhhh-HHHHHHHHHcC------------CceEEecC-----------------CCH
Confidence 88876542 456788776554 43222221111 11222221 245
Q ss_pred HHHHHHHHhC--CCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccc-ccccc---CC
Q psy8199 409 FDLEILLKKN--HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFF-ACEHA---EI 482 (965)
Q Consensus 409 ~~le~~l~~~--~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~-~~~~~---~~ 482 (965)
+++++++++. +.++++|++++ +++++|...+ +++|.++|++||+++|+||+|. +|..+... ..... ..
T Consensus 118 ~~le~~i~~~~~~~~~~~v~~~~-~~~~tG~~~~----~~~i~~~~~~~~~~livD~a~~-~g~~~~~~~~~~~~~~~~~ 191 (349)
T cd06454 118 EDLEKLLREARRPYGKKLIVTEG-VYSMDGDIAP----LPELVDLAKKYGAILFVDEAHS-VGVYGPHGRGVEEFGGLTD 191 (349)
T ss_pred HHHHHHHHHhhccCCCeEEEEec-cccCCCCccC----HHHHHHHHHHcCCEEEEEcccc-ccccCCCCCChhhhccccc
Confidence 6777777653 24678888888 8999998876 8999999999999999999995 44332211 11111 12
Q ss_pred Cccee--eeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc-ccHHHHHHHHHH
Q psy8199 483 WPDFL--CLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK-DNILQRISQDMK 559 (965)
Q Consensus 483 ~pDiv--t~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~-~~~~~~~~~~~~ 559 (965)
.+|++ +++|.++. +.|++++++++++.+... ... +..+.+.++..++++.++|+.+.+ +...+++.++.+
T Consensus 192 ~~~i~~~s~sK~~~~---~gG~i~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~ 264 (349)
T cd06454 192 DVDIIMGTLGKAFGA---VGGYIAGSKELIDYLRSY--ARG--FIFSTSLPPAVAAAALAALEVLQGGPERRERLQENVR 264 (349)
T ss_pred cCcEEEeechhhhcc---cCCEEECCHHHHHHHHHh--chh--hhccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 45665 58898865 347788888888777541 111 122335678889999999988765 456788888889
Q ss_pred HHHHHHHcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec--------CCEEEEeCCcccCH
Q psy8199 560 KITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI--------GNTVYLMPPYILNK 631 (965)
Q Consensus 560 ~l~~~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~--------~~~lR~~p~~~~t~ 631 (965)
++.+.|.++ ++..+...+.++..... .+ .....++.+.|.++||.+.+. ++.+|++++...++
T Consensus 265 ~l~~~l~~~----g~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~L~~~gI~~~~~~~~~~~~~~~~iRi~~~~~~~~ 335 (349)
T cd06454 265 YLRRGLKEL----GFPVGGSPSHIIPPLIG-DD----PAKAVAFSDALLERGIYVQAIRYPTVPRGTARLRISLSAAHTK 335 (349)
T ss_pred HHHHHHHhc----CCcccCCCCCcEEEEeC-CC----hHHHHHHHHHHHhCCceEEEecCCccCCCCCeEEEEEeCCCCH
Confidence 998888765 22222222333222221 11 112456888899999998752 36899999988999
Q ss_pred HHHHHHHHhhhc
Q psy8199 632 NEIQHMTSAIFQ 643 (965)
Q Consensus 632 ~~i~~~~~~l~~ 643 (965)
++++++++++.+
T Consensus 336 ~~i~~~~~~l~~ 347 (349)
T cd06454 336 EDIDRLLEALKE 347 (349)
T ss_pred HHHHHHHHHHHH
Confidence 999999998864
|
The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life. |
| >PLN02428 lipoic acid synthase | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.7e-21 Score=203.70 Aligned_cols=177 Identities=17% Similarity=0.288 Sum_probs=150.3
Q ss_pred EeEeEeeccCCCCCCCCCCCCCCcCCCCcccccCCCHHHHHHHHHHHHHCCCCEEEEeeccC-CCCcccHHHHHHHHHHH
Q psy8199 681 LAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWR-ELKDRDLDNIENMICEV 759 (965)
Q Consensus 681 ~~~~i~~~s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~l~~g~~-~~~~~~~~~~~~~~~~i 759 (965)
..+.|.+ +++|+.+|.||+++...+ .++ .+++++.+.++.+.+.|++++.|+++.. .+.+...+++.++++.|
T Consensus 102 taT~mil-g~gCtr~CrFCav~~~~~----p~~-~d~~Ep~~vA~~v~~~Glk~vvltSg~rddl~D~ga~~~~elir~I 175 (349)
T PLN02428 102 TATIMIL-GDTCTRGCRFCAVKTSRT----PPP-PDPDEPENVAEAIASWGVDYVVLTSVDRDDLPDGGSGHFAETVRRL 175 (349)
T ss_pred eEEEEEe-cCCCCCCCCCCcCCCCCC----CCC-CChhhHHHHHHHHHHcCCCEEEEEEcCCCCCCcccHHHHHHHHHHH
Confidence 3455666 999999999999875322 233 5688999999888999999999999864 33567789999999999
Q ss_pred HhcC--cEeEE-ecCC-CCHHHHHHHHHhCCCeEeccCCCCHHHHhccc-CCCCHHHHHHHHHHHHHc--CCceeeeEEE
Q psy8199 760 KKIG--LETCL-TLGM-LNENQAYRLKKVGLDYYNHNLDTSPKLYGDII-STRDYENRLNTLKNVRNV--GINICCGGII 832 (965)
Q Consensus 760 ~~~~--~~i~~-~~~~-~~~e~l~~Lk~aG~~~i~i~~es~~~~~~~i~-~~~~~~~~~~~i~~~~~~--Gi~v~~~~i~ 832 (965)
++.. +.+.. .++. .+++.++.|+++|++.+++++||++++++.|+ +.+++++++++++.+++. |+.+++++|+
T Consensus 176 r~~~P~i~Ie~L~pdf~~d~elL~~L~eAG~d~i~hnlETv~rL~~~Ir~~~~sye~~Le~L~~ak~~~pGi~tkSg~Mv 255 (349)
T PLN02428 176 KQLKPEILVEALVPDFRGDLGAVETVATSGLDVFAHNIETVERLQRIVRDPRAGYKQSLDVLKHAKESKPGLLTKTSIML 255 (349)
T ss_pred HHhCCCcEEEEeCccccCCHHHHHHHHHcCCCEEccCccCcHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEE
Confidence 9854 44433 2333 38999999999999999999999999999999 678999999999999999 9999999999
Q ss_pred ecCCCHHHHHHHHHHHHhcCCCCCceeeccccc
Q psy8199 833 GLSESRDQRAELIFQLANLNPYPESVPINNLVQ 865 (965)
Q Consensus 833 Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P 865 (965)
|+|||+||+.++++.+++++ ++.+++..|++
T Consensus 256 GLGET~Edv~e~l~~Lrelg--vd~vtigqyL~ 286 (349)
T PLN02428 256 GLGETDEEVVQTMEDLRAAG--VDVVTFGQYLR 286 (349)
T ss_pred ecCCCHHHHHHHHHHHHHcC--CCEEeeccccC
Confidence 99999999999999999999 99999976653
|
|
| >PRK01533 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.6e-21 Score=213.91 Aligned_cols=317 Identities=12% Similarity=0.175 Sum_probs=218.7
Q ss_pred CCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHH
Q psy8199 252 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVAL 331 (965)
Q Consensus 252 dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al 331 (965)
+++..+|+..| .+++| .+|.+++++.+.+..... |+.....+|.+.+++.++.+.++|++++|+++++..++
T Consensus 27 ~~~~~i~l~~n--en~~~-~~~~v~~a~~~~~~~~~~-----Yp~~g~~~Lr~aia~~~~~~~~~I~vt~Gs~e~i~~~~ 98 (366)
T PRK01533 27 GDHSFVKLASN--ENPFG-CSPRVLDELQKSWLDHAL-----YPDGGATTLRQTIANKLHVKMEQVLCGSGLDEVIQIIS 98 (366)
T ss_pred CCCceEEeCCC--CCCCC-CCHHHHHHHHHHHHhcCc-----CCCCCHHHHHHHHHHHhCCCcceEEECCCHHHHHHHHH
Confidence 45678888776 45677 578899999887655422 33444566777788877778889999999999999998
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHH
Q psy8199 332 KMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDL 411 (965)
Q Consensus 332 ~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l 411 (965)
++... +++.|++.+++|.++...+...+ ..+..+|... .. .|+++|
T Consensus 99 ~~l~~--------~gd~vlv~~P~y~~~~~~~~~~g-------------~~v~~v~~~~--~~-----------~d~~~l 144 (366)
T PRK01533 99 RAVLK--------AGDNIVTAGATFPQYRHHAIIEG-------------CEVKEVALNN--GV-----------YDLDEI 144 (366)
T ss_pred HHhcC--------CCCEEEEcCCcHHHHHHHHHHcC-------------CEEEEeecCC--CC-----------cCHHHH
Confidence 87643 56789999999988743332221 1233333321 11 367888
Q ss_pred HHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccccc-ccccccCCCccee---
Q psy8199 412 EILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKF-FACEHAEIWPDFL--- 487 (965)
Q Consensus 412 e~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~-~~~~~~~~~pDiv--- 487 (965)
++++.+ .....++++| +|++|.+. +.+.+++|.++|++++ ++|+||+|..|...+.. .......-.+.++
T Consensus 145 ~~~~~~--~~~~v~i~~P--~NPTG~~~-~~~~l~~l~~~~~~~~-~~iiDe~y~~~~~~~~~~~~~~~~~~~~~vi~~~ 218 (366)
T PRK01533 145 SSVVDN--DTKIVWICNP--NNPTGTYV-NDRKLTQFIEGISENT-LIVIDEAYYEYVTAKDFPETLPLLEKHKNILVLR 218 (366)
T ss_pred HHHhCc--CCcEEEEeCC--CCCCCCCc-CHHHHHHHHHhCCCCC-EEEEEccHHHhhccccCcchhHHhccCCCEEEEe
Confidence 887753 2234455556 99999877 6677889999998876 57789999876432211 1111122234444
Q ss_pred eeccccC-CCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHH----HHHHHHHH
Q psy8199 488 CLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRI----SQDMKKIT 562 (965)
Q Consensus 488 t~sK~l~-gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~----~~~~~~l~ 562 (965)
+|||.++ .| +++|++++++++++.+.. ...+++.+.+++.++.++|+ +.++.+++ ++..+++.
T Consensus 219 SfSK~~~l~G-lRiG~~i~~~~~~~~l~~--------~~~~~~~~~~~q~aa~~~l~---~~~~~~~~~~~~~~~r~~~~ 286 (366)
T PRK01533 219 TFSKAYGLAS-FRVGYAVGHEELIEKLNV--------VRLPFNVSSLAQKAATIAFG---DDEFIEEIVRVNTEGLRQYE 286 (366)
T ss_pred CchHHhcChH-HHHhHHhCCHHHHHHHHH--------hcCCCCcCHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHH
Confidence 6899887 45 899999999999998865 12457789999999999984 33344333 33444444
Q ss_pred HHHHcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecCCEEEEeCCcccCHHHHHHHHHhhh
Q psy8199 563 KALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIF 642 (965)
Q Consensus 563 ~~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~lR~~p~~~~t~~~i~~~~~~l~ 642 (965)
+.++.+ ++....+.|+|+.+.+. + ...+.+.|.++||.+++..+++|++ ..+.++.+.+++++.
T Consensus 287 ~~l~~~----g~~~~~~~~nf~~~~~~--~-------~~~~~~~l~~~GI~Vr~~~~~iRis---~~~~~~~~~l~~al~ 350 (366)
T PRK01533 287 SFCKEN----EIPFYQSQTNFIFLPVE--N-------GGEIYEACAHAGFIIRPFPNGVRIT---VGTREQNEGVISVLQ 350 (366)
T ss_pred HHHHhC----CCccCCCcCcEEEEeCC--C-------HHHHHHHHHHCCcEEccCCCceEEe---CCCHHHHHHHHHHHH
Confidence 444433 45556778998888763 2 2357788999999999988899999 778899999998886
Q ss_pred cc
Q psy8199 643 QT 644 (965)
Q Consensus 643 ~~ 644 (965)
+.
T Consensus 351 ~~ 352 (366)
T PRK01533 351 QH 352 (366)
T ss_pred HH
Confidence 53
|
|
| >COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.8e-20 Score=205.41 Aligned_cols=318 Identities=14% Similarity=0.175 Sum_probs=234.4
Q ss_pred ccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcC-CCCCeEEEcCChhHHHHHHHHH
Q psy8199 255 RYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQ-YKLGHCFYGSDGASAVEVALKM 333 (965)
Q Consensus 255 ~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~-~~~~~v~~~~sGseA~~~Al~~ 333 (965)
..+|+.++ .+++| .+|.+.+++.+.++.+ ..|+.+...++.+.+++.++ ...+.|+.++|.+|.+...+++
T Consensus 23 ~~i~LssN--enP~g-p~~~~~~~~~~~~~~~-----~rYPd~~~~~l~~a~a~~~~~~~~~~V~~gnGsde~i~~l~~~ 94 (356)
T COG0079 23 GIIKLSSN--ENPYG-PPPKVIEAIRAALDKL-----NRYPDPDYRELRAALAEYYGVVDPENVLVGNGSDELIELLVRA 94 (356)
T ss_pred cceeecCC--CCCCC-CCHHHHHHHHHHHHhh-----ccCCCCcHHHHHHHHHHHhCCCCcceEEEcCChHHHHHHHHHH
Confidence 68888887 67888 4589999998888754 35666677889999999887 6678999999999999999998
Q ss_pred HHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHH
Q psy8199 334 SFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEI 413 (965)
Q Consensus 334 a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~ 413 (965)
.+. ++++|++..++|.-+...+...+. .++.+|..+ +. .|++++.+
T Consensus 95 ~~~--------~gd~vl~~~Ptf~~Y~~~a~~~g~-------------~~~~v~~~~--~~-----------~d~~~~~~ 140 (356)
T COG0079 95 FVE--------PGDTVLIPEPTFSMYEIAAQLAGA-------------EVVKVPLKE--FR-----------LDLDAILA 140 (356)
T ss_pred hhc--------CCCEEEEcCCChHHHHHHHHhcCC-------------eEEEecccc--cc-----------cCHHHHHH
Confidence 864 458999999999888666555543 344455432 11 36777777
Q ss_pred HHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCccee---eec
Q psy8199 414 LLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL---CLS 490 (965)
Q Consensus 414 ~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDiv---t~s 490 (965)
.+.+ +.-..++++| +|++|... +.+.++++.+.|.+ +.+||+||+|..|+. ........-.++++ |||
T Consensus 141 ~~~~--~~~lv~i~nP--NNPTG~~~-~~~~l~~l~~~~~~-~~~vVvDEAY~eF~~---~~~~~l~~~~~nlivlRTfS 211 (356)
T COG0079 141 AIRD--KTKLVFLCNP--NNPTGTLL-PREELRALLEALPE-GGLVVIDEAYIEFSP---ESSLELLKYPPNLIVLRTFS 211 (356)
T ss_pred hhhc--CCCEEEEeCC--CCCCCCCC-CHHHHHHHHHhCCC-CcEEEEeCchhhcCC---chhhhhccCCCCEEEEEecH
Confidence 7763 2346677778 99999887 55557778887777 999999999998854 12222223234465 799
Q ss_pred cccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHHHccc
Q psy8199 491 KGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN-KDNILQRISQDMKKITKALTSLI 569 (965)
Q Consensus 491 K~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~-~~~~~~~~~~~~~~l~~~L~~l~ 569 (965)
|++|-.++++|++++++++++.+.. ....|+.|.+++++|.++|+.-+ -....+++.+.++++.+.|+.+
T Consensus 212 Ka~gLAGlRlGy~ia~~~~i~~l~~--------vr~p~~v~~~a~~aa~aal~~~~~~~~~~~~~~~~r~rl~~~l~~~- 282 (356)
T COG0079 212 KAFGLAGLRVGYAIANPELIAALNK--------VRPPFNVSSPALAAAIAALRDADYLEESVERIREERERLYAALKAL- 282 (356)
T ss_pred HhhhcchhceeeccCCHHHHHHHHH--------hcCCCCCCHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHhC-
Confidence 9665433899999999999999986 34778889999999999886331 1234555666666666666654
Q ss_pred CCCcee-eeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecC------CEEEEeCCcccCHHHHHHHHHhhh
Q psy8199 570 THPKII-NFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG------NTVYLMPPYILNKNEIQHMTSAIF 642 (965)
Q Consensus 570 ~~~~i~-~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~------~~lR~~p~~~~t~~~i~~~~~~l~ 642 (965)
+ +. ..++.++|+.+.+. + .. +..+.+.|.++||+++... +++|++ +-++++.+.+++++.
T Consensus 283 --~-~~~v~pS~aNFvlv~~~--~----~~-~~~l~~~L~~~giivR~~~~~~~~~~~lRit---vgt~een~~ll~AL~ 349 (356)
T COG0079 283 --G-LFGVFPSQANFVLVRVP--D----AE-AAALAEALLKKGILVRDCSSVGLLPGYLRIT---VGTPEENDRLLAALR 349 (356)
T ss_pred --C-CCeecCCCCcEEEEECC--C----cc-HHHHHHHHHHCCEEEEeCCCCCCCCCeEEEE---eCCHHHHHHHHHHHH
Confidence 3 33 55677999988775 2 23 4468899999999999763 489999 788888899998887
Q ss_pred ccc
Q psy8199 643 QTF 645 (965)
Q Consensus 643 ~~~ 645 (965)
+..
T Consensus 350 ~~~ 352 (356)
T COG0079 350 EVL 352 (356)
T ss_pred HHH
Confidence 644
|
|
| >KOG1360|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.3e-21 Score=195.80 Aligned_cols=317 Identities=16% Similarity=0.169 Sum_probs=233.5
Q ss_pred CCC-CCHHHHHHHHHHHhhcccc----ccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcC
Q psy8199 268 FGH-SNSYINKALKNQLNKLEHV----MLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKG 342 (965)
Q Consensus 268 lGh-~~p~v~~av~~~~~~~~~~----~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g 342 (965)
||. .||+|.+|+.+.+++.+.. -+..+.+....+|.+.|+++. ..+..++.+|..-||+..+-..-+.
T Consensus 182 Lgms~Hp~V~~A~~~tl~~hG~GAGGTRNIsG~s~~hv~LE~eLA~LH--qK~aALlFsSCfVANDstLftLak~----- 254 (570)
T KOG1360|consen 182 LGMSRHPEVLDAMHDTLDRHGAGAGGTRNISGHSKHHVRLEAELADLH--QKEAALLFSSCFVANDSTLFTLAKK----- 254 (570)
T ss_pred ccccCChHHHHHHHHHHHHcCCCcCCccccCCCCchhhhHHHHHHHHh--cCcceeeeeeeeeccchHHHHHHHH-----
Confidence 444 4999999999999885322 123467888999999999998 5677777788999999988744331
Q ss_pred CCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCC-c
Q psy8199 343 FLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHN-K 421 (965)
Q Consensus 343 ~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~-~ 421 (965)
=.+-+|..|.+-|.+.+..+..++.+. . .|.+||++.|+++|++.+. .
T Consensus 255 --lpgcei~SD~gNHASMI~GIrns~v~K-------------------~----------IFrHND~~hL~~lL~~~~~sv 303 (570)
T KOG1360|consen 255 --LPGCEIFSDEGNHASMIQGIRNSRVPK-------------------H----------IFRHNDLDHLEQLLQSSPKSV 303 (570)
T ss_pred --CCCcEEeccccchHHHHHHhhhcCCcc-------------------e----------eeccCCHHHHHHHHHhCCCCC
Confidence 245678888889998776665554221 1 1334899999999987643 3
Q ss_pred EEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccccccc--ccccCC--Cccee--eeccccCC
Q psy8199 422 IAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFA--CEHAEI--WPDFL--CLSKGITG 495 (965)
Q Consensus 422 ~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~--~~~~~~--~pDiv--t~sK~l~g 495 (965)
...|-+|. |+++.|.+.| |++|.+++++||++..+|||+. .|-.|..++ -+.-|+ +.||+ |+||++|.
T Consensus 304 PKivAFEt-VhSM~Gavcp----leelcDvah~yGAiTFlDEVHA-VGlYG~rGaGvgerdGvm~kvDiIsGTLgKafGc 377 (570)
T KOG1360|consen 304 PKIVAFET-VHSMDGAVCP----LEELCDVAHKYGAITFLDEVHA-VGLYGPRGAGVGERDGVMHKVDIISGTLGKAFGC 377 (570)
T ss_pred CceEEEee-eeccCCCcCC----HHHHHHHHHHhCceeeeehhhh-hccccCCCCCccccCCcchhhhhcccchhhhccc
Confidence 46788999 9999999999 9999999999999999999997 677776433 455666 57888 79999976
Q ss_pred CcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcc---cHHHHHHHHHHHHHHHHHcccCCC
Q psy8199 496 GYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKD---NILQRISQDMKKITKALTSLITHP 572 (965)
Q Consensus 496 G~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~---~~~~~~~~~~~~l~~~L~~l~~~~ 572 (965)
= -||+.++..+++.++. ....|+ .|.+-+|..++.|+++.+++..+ .+...-+++..++++.|.++
T Consensus 378 V---GGYIAat~~LvDmiRS--yAaGFI--FTTSLPP~vl~GAleaVr~lk~~eg~~lR~~hqrnv~~~kq~l~~~---- 446 (570)
T KOG1360|consen 378 V---GGYIAATRKLVDMIRS--YAAGFI--FTTSLPPMVLAGALEAVRILKSEEGRVLRRQHQRNVKYVKQLLMEL---- 446 (570)
T ss_pred c---cceehhhhhHHHHHHH--hcCceE--EecCCChHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHc----
Confidence 1 1568899999998876 333454 45567899999999999998754 24444556777788888776
Q ss_pred ceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHH-HcCcEEee--------cCCEEEEeCCcccCHHHHHHHHHhhhc
Q psy8199 573 KIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAAL-KNELLLRP--------IGNTVYLMPPYILNKNEIQHMTSAIFQ 643 (965)
Q Consensus 573 ~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~--------~~~~lR~~p~~~~t~~~i~~~~~~l~~ 643 (965)
++..++....++-+.+. | ...+.+.++.|+ ++||++.. +...+|+.|...+|++.++.+++++..
T Consensus 447 GiPVi~~pSHIiPv~vg--d----a~l~~~~sd~Li~~h~iYvQaINyPTV~rG~E~LRiaPTP~HT~~mm~~lv~~l~~ 520 (570)
T KOG1360|consen 447 GIPVIPNPSHIIPVRVG--D----AALAKQASDILISKHNIYVQAINYPTVARGTERLRIAPTPHHTPQMMNILVNALLD 520 (570)
T ss_pred CCcccCCCcceeeeecc--C----HHHHHHHHHHHHHhcCeEEEeccCCcccccceeeecCCCCCCCHHHHHHHHHHHHH
Confidence 55555555666666553 4 233445666665 67999863 226899999999999988888877654
Q ss_pred cc
Q psy8199 644 TF 645 (965)
Q Consensus 644 ~~ 645 (965)
++
T Consensus 521 vw 522 (570)
T KOG1360|consen 521 VW 522 (570)
T ss_pred HH
Confidence 43
|
|
| >PRK06225 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2e-20 Score=212.01 Aligned_cols=333 Identities=14% Similarity=0.126 Sum_probs=217.5
Q ss_pred CcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHH
Q psy8199 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALK 332 (965)
Q Consensus 253 G~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~ 332 (965)
+..+||+..+ .+.++ .+|++.+++.+++...... .........++.+.+++.++.+.+++++++|+++|+..+++
T Consensus 27 ~~~~i~l~~~--~~~~~-~~~~~~~a~~~~~~~~~~~--~y~~~~g~~~lr~~ia~~l~~~~~~v~~~~g~t~al~~~~~ 101 (380)
T PRK06225 27 DKEMIWMGQN--TNHLG-PHEEVREAMIRCIEEGEYC--KYPPPEGFPELRELILKDLGLDDDEALITAGATESLYLVMR 101 (380)
T ss_pred cCCeEEccCC--CCCCC-CCHHHHHHHHHHHhcCCCC--CCCCCcchHHHHHHHHHhcCCCCCcEEEeCCHHHHHHHHHH
Confidence 4567887765 34454 6899999999888653111 11222345678888888887777899999999999999998
Q ss_pred HHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHH
Q psy8199 333 MSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLE 412 (965)
Q Consensus 333 ~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le 412 (965)
.+.. +++.|++.+++|+.+.......+ ..+..+|....... + ..|+++++
T Consensus 102 ~~~~--------~gd~vl~~~p~y~~~~~~~~~~g-------------~~~~~v~~~~~~~~--------~-~~d~~~l~ 151 (380)
T PRK06225 102 AFLS--------PGDNAVTPDPGYLIIDNFASRFG-------------AEVIEVPIYSEECN--------Y-KLTPELVK 151 (380)
T ss_pred HhcC--------CCCEEEEcCCCCcchHHHHHHhC-------------ceEEeeccccccCC--------c-cCCHHHHH
Confidence 7632 45779999999876522111111 12333332110000 0 13677888
Q ss_pred HHHHhCCCcEEEE-EEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccccccccccc-CCCcceeeec
Q psy8199 413 ILLKKNHNKIAAI-IIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHA-EIWPDFLCLS 490 (965)
Q Consensus 413 ~~l~~~~~~~aai-i~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~-~~~pDivt~s 490 (965)
+.+. +++.+| +++| +|++|.+. +.+.+++|.++|++||+++|+||+|.+|.. +........ ....++.+||
T Consensus 152 ~~~~---~~~~~v~l~~p--~NptG~~~-~~~~~~~i~~~a~~~~~~ii~De~y~~~~~-~~~~~~~~~~~~~i~~~s~S 224 (380)
T PRK06225 152 ENMD---ENTRLIYLIDP--LNPLGSSY-TEEEIKEFAEIARDNDAFLLHDCTYRDFAR-EHTLAAEYAPEHTVTSYSFS 224 (380)
T ss_pred hhcC---CCceEEEEeCC--CCCCCcCC-CHHHHHHHHHHHHHCCcEEEEehhHHHHhc-cCCchhhcCCCCEEEEeech
Confidence 7775 234444 4556 78888766 677899999999999999999999987632 221111111 1123355899
Q ss_pred cccC-CCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHH----HHHHHHHHH
Q psy8199 491 KGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQ----DMKKITKAL 565 (965)
Q Consensus 491 K~l~-gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~----~~~~l~~~L 565 (965)
|.++ .| +++|++++++++++.+.. ....+++.|.++++++.++|+.. +.+.+++++ +.+.+.+.|
T Consensus 225 K~~g~~G-~RiG~i~~~~~l~~~~~~-------~~~~~~~~~~~~~~~a~~~l~~~--~~~~~~~~~~~~~~~~~l~~~L 294 (380)
T PRK06225 225 KIFGMAG-LRIGAVVATPDLIEVVKS-------IVINDLGTNVIAQEAAIAGLKVK--DEWIDRIRRTTFKNQKLIKEAV 294 (380)
T ss_pred hhcCCcc-ceeEEEecCHHHHHHHHH-------HHhcccCCCHHHHHHHHHHHhcc--hHHHHHHHHHHHHHHHHHHHHH
Confidence 9986 45 899999999999988765 12346777899999888888642 234444443 344455555
Q ss_pred HcccCCCce--eeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec--------CCEEEEeCCcccCHHHHH
Q psy8199 566 TSLITHPKI--INFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI--------GNTVYLMPPYILNKNEIQ 635 (965)
Q Consensus 566 ~~l~~~~~i--~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~--------~~~lR~~p~~~~t~~~i~ 635 (965)
+++ +++ ...++.|.++++.+. ..+. ....+.+.|.++||.++|+ .+++|++ +..++++++
T Consensus 295 ~~~---~~~~~~~~~~~g~~~~~~~~-~~~~----~~~~l~~~l~~~gi~v~~g~~~~~~~~~~~iR~s--~~~~~e~l~ 364 (380)
T PRK06225 295 DEI---EGVFLPVYPSHGNMMVIDIS-EAGI----DPEDLVEYLLERKIFVRQGTYTSKRFGDRYIRVS--FSIPREQVE 364 (380)
T ss_pred HhC---cCCccccCCCCCeEEEEEcc-cccC----CHHHHHHHHHHCCEEEcCCcccCcCCCCceEEEE--eCCCHHHHH
Confidence 443 332 234566888887764 1111 1346778888999999874 1489999 566889999
Q ss_pred HHHHhhhccccc
Q psy8199 636 HMTSAIFQTFNE 647 (965)
Q Consensus 636 ~~~~~l~~~~~~ 647 (965)
++++++...+..
T Consensus 365 ~~~~~l~~~~~~ 376 (380)
T PRK06225 365 VFCEEFPDVVET 376 (380)
T ss_pred HHHHHHHHHHHH
Confidence 999998765543
|
|
| >cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.1e-20 Score=212.29 Aligned_cols=334 Identities=12% Similarity=0.077 Sum_probs=214.8
Q ss_pred ccchhccCCCCCHHHHHHHHHHHhhc-ccccc-----CCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHH
Q psy8199 261 SSWWVNLFGHSNSYINKALKNQLNKL-EHVML-----SNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMS 334 (965)
Q Consensus 261 ~~~~~~~lGh~~p~v~~av~~~~~~~-~~~~~-----~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a 334 (965)
++.+....||++|++++++..++ .. .+++. ..+..+...+++++++++++.+.+.+.+++||+++.+.+++.+
T Consensus 23 ~~l~~g~~~~~~p~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~la~~~g~~~~~v~~~~~g~~~~~~~~~~~ 101 (398)
T cd00613 23 SFLGSGTYKHNPPAVIKRNILEN-EFYTAYTPYQPEISQGRLQALFELQTMLCELTGMDVANASLQDEATAAAEAAGLAA 101 (398)
T ss_pred ccccccccCCcCcHHHHHHhccc-cCcccCCCCChhhhhhHHHHHHHHHHHHHHHHCCCccceeccCchHHHHHHHHHHH
Confidence 45556678999999998877776 32 22222 2344567789999999998765568888888888888887776
Q ss_pred HHHHHhcCCC-CceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHH
Q psy8199 335 FHYWYNKGFL-NKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEI 413 (965)
Q Consensus 335 ~~~~~~~g~~-~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~ 413 (965)
+.. + +++.|++ ...||+.+..++...+... ...+..+|.+... ..|++++++
T Consensus 102 ~~~------~~~gd~Vl~-~~~~h~~~~~~~~~~~~~~--------g~~~~~v~~~~~~------------~~d~~~l~~ 154 (398)
T cd00613 102 IRA------YHKRNKVLV-PDSAHPTNPAVARTRGEPL--------GIEVVEVPSDEGG------------TVDLEALKE 154 (398)
T ss_pred Hhc------ccCCCEEEE-cCccCcchHHHHHHhcccC--------CcEEEEeccCCCC------------CcCHHHHHH
Confidence 542 1 2455555 5568888766665554211 1123444443211 136788888
Q ss_pred HHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcceee--ecc
Q psy8199 414 LLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLC--LSK 491 (965)
Q Consensus 414 ~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt--~sK 491 (965)
++. +++++|++++ ++ ++|.+. +++++|+++|++||+++|+|++++.....+. ... ..+|+++ ++|
T Consensus 155 ~i~---~~t~~viv~~-~~-~~G~~~---~~l~~i~~la~~~g~~livD~~~~~~~~~~~---~~~--~~~d~~~~s~~K 221 (398)
T cd00613 155 EVS---EEVAALMVQY-PN-TLGVFE---DLIKEIADIAHSAGALVYVDGDNLNLTGLKP---PGE--YGADIVVGNLQK 221 (398)
T ss_pred hcC---CCeEEEEEEC-CC-CCceec---chHHHHHHHHHhcCCEEEEEeccccccCCCC---hHH--cCCCEEEeeccc
Confidence 774 4688899988 64 678763 5689999999999999999998753211111 111 2478876 467
Q ss_pred cc---CCCcccceeeeecHHHHHhhhcc---CC-----ccc---------------ccccCCCCCCHHHHHHHHHHHHHH
Q psy8199 492 GI---TGGYLPLSLVMTTDKIYNSIYYK---NN-----INI---------------FLHSHSYSGNPLACCAALATLEIF 545 (965)
Q Consensus 492 ~l---~gG~~pig~v~~~~~i~~~~~~~---~~-----~~~---------------~~~~~t~~~~~~~~aaa~a~L~~~ 545 (965)
.+ ++|++.+|++++++++++.+... .. ... ....++++++++.++++.++++.+
T Consensus 222 ~~~p~g~Ggp~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~~~~~~~~~~~~~~~~a~~~l~~~ 301 (398)
T cd00613 222 TGVPHGGGGPGAGFFAVKKELVRFLPGRLVGVTKDAEGNRAFRLALQTREQHIRREKATSNICTGQALLALMAAMYIVYL 301 (398)
T ss_pred cCCCCCCCCCceeEEEEhhhhHhhCCCCeeccccccCCCcceEEecccchhhcccccccccceecHHHHHHHHHHHHHHh
Confidence 54 34447788888888887764210 00 000 012346777888888888888776
Q ss_pred hccc---HHHHHHHHHHHHHHHHHcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEee----cC
Q psy8199 546 NKDN---ILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRP----IG 618 (965)
Q Consensus 546 ~~~~---~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~----~~ 618 (965)
.+++ +.++.++++++++++|+++........ .....+.+.+. .. .......+.+.|.++|+++.. ..
T Consensus 302 ~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~--~~~~~v~~~~~--~~--~~~~~~~~~~~L~~~gi~~~~~~~~~~ 375 (398)
T cd00613 302 GPEGLKEIAERAHLNANYLAKRLKEVGGVLPFNG--PFFHEFVLRLP--PL--YGIRAEDLAKALIDGGFHAPTMYLPVD 375 (398)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCC--CeeEEEEEEcC--Cc--chHHHHHHHHhhhhcCccccccccCCC
Confidence 5433 567888899999999987621110001 11122233332 10 011245688889999998765 34
Q ss_pred CEEEEeCCcccCHHHHHHHHHhh
Q psy8199 619 NTVYLMPPYILNKNEIQHMTSAI 641 (965)
Q Consensus 619 ~~lR~~p~~~~t~~~i~~~~~~l 641 (965)
+.+|++|++.+++++++++++.+
T Consensus 376 ~~lRis~~~~~t~edid~~~~~L 398 (398)
T cd00613 376 GTLMIEPTETETKEELDALLEAL 398 (398)
T ss_pred CeEEEEcCCCCCHHHHHHHHHhC
Confidence 79999999999999999998764
|
This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life. |
| >PRK07682 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.5e-20 Score=209.95 Aligned_cols=333 Identities=12% Similarity=0.092 Sum_probs=217.9
Q ss_pred ccccccccchhccCCCCCHHHHHHHHHHHhh-ccccccCCCCcHHHHHHHHHHHhhcCC--CCC-eEEEcCChhHHHHHH
Q psy8199 255 RYLDAISSWWVNLFGHSNSYINKALKNQLNK-LEHVMLSNLTHKPVIKLSEKLSSLTQY--KLG-HCFYGSDGASAVEVA 330 (965)
Q Consensus 255 ~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~-~~~~~~~~~~~~~~~~la~~l~~~~~~--~~~-~v~~~~sGseA~~~A 330 (965)
..+++..|.. .++ .++.+.+++.++++. ...|....+..+.+..+++.+.+.++. ..+ +|++++||++|+..+
T Consensus 21 ~~i~l~~~~~--~~~-~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~ 97 (378)
T PRK07682 21 GVISLGVGEP--DFV-TPWNVREASIRSLEQGYTSYTANAGLLELRQEIAKYLKKRFAVSYDPNDEIIVTVGASQALDVA 97 (378)
T ss_pred CeEEeCCCCC--CCC-CCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHH
Confidence 4577766543 344 356788888887764 223433445667778888888776443 344 799999999999999
Q ss_pred HHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCC-CCCCCCCCChhHHHHHHHH
Q psy8199 331 LKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPD-SRNINKGNSANEIARCAIF 409 (965)
Q Consensus 331 l~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~ 409 (965)
++...+ +++.|++.+++|+++.......+. ....++... .... .|++
T Consensus 98 ~~~l~~--------~gd~vl~~~p~y~~~~~~~~~~g~-------------~~~~~~~~~~~~~~-----------~d~~ 145 (378)
T PRK07682 98 MRAIIN--------PGDEVLIVEPSFVSYAPLVTLAGG-------------VPVPVATTLENEFK-----------VQPA 145 (378)
T ss_pred HHHhCC--------CCCEEEEeCCCchhhHHHHHHcCC-------------EEEEeecCCccCCC-----------CCHH
Confidence 886642 568899999999876433222221 122222211 0011 2678
Q ss_pred HHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccc-cccCCCccee-
Q psy8199 410 DLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFAC-EHAEIWPDFL- 487 (965)
Q Consensus 410 ~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~-~~~~~~pDiv- 487 (965)
+|++++.+ ++.++++.. ++|++|.+. +.+.+++|.++|++|++++|+||+|..|...+.+.+. ...+..+.++
T Consensus 146 ~l~~~~~~---~~~~v~~~~-p~NPtG~~~-s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~ 220 (378)
T PRK07682 146 QIEAAITA---KTKAILLCS-PNNPTGAVL-NKSELEEIAVIVEKHDLIVLSDEIYAELTYDEAYTSFASIKGMRERTIL 220 (378)
T ss_pred HHHhhcCc---ccEEEEEEC-CCCCcCcCc-CHHHHHHHHHHHHHcCcEEEEehhhhhcccCCCCCChhhcccccCCEEE
Confidence 88887742 345554444 489999755 7888999999999999999999999988654432221 2223223333
Q ss_pred --eeccccC-CCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh--cccHHHHHHHHHHHHH
Q psy8199 488 --CLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN--KDNILQRISQDMKKIT 562 (965)
Q Consensus 488 --t~sK~l~-gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~--~~~~~~~~~~~~~~l~ 562 (965)
+|||.++ .| +++|++++++++++.+.. ....++++.++++++++.++|+... -....+.++++.+.+.
T Consensus 221 ~~S~SK~~~~~G-lR~G~~~~~~~~i~~l~~------~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~ 293 (378)
T PRK07682 221 ISGFSKGFAMTG-WRLGFIAAPVYFSEAMLK------IHQYSMMCAPTMAQFAALEALRAGNDDVIRMRDSYRKRRNFFV 293 (378)
T ss_pred EecCcccccChh-hhhhhhhcCHHHHHHHHH------HHHhhccCCCHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHH
Confidence 6899887 45 899999999999988865 1222345678899999888885321 1224455666667777
Q ss_pred HHHHcccCCCceeeeeceeEEEEEE-EeecCccchhhHHHHHHHHHH-HcCcEEeec-------CCEEEEeCCcccCHHH
Q psy8199 563 KALTSLITHPKIINFRQKGMIWAFD-VIIEDPEQIETFSKKFFVAAL-KNELLLRPI-------GNTVYLMPPYILNKNE 633 (965)
Q Consensus 563 ~~L~~l~~~~~i~~v~g~G~~~~i~-~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~-------~~~lR~~p~~~~t~~~ 633 (965)
+.|+++ ++....+.|.++.+. +. ..+. ....+.+.++ ++||.+.|+ .+++|++ +..++++
T Consensus 294 ~~L~~~----~~~~~~p~g~~~~~~~~~-~~~~----~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~iRis--~~~~~~~ 362 (378)
T PRK07682 294 TSFNEI----GLTCHVPGGAFYAFPSIS-STGL----SSEEFAEQLLLEEKVAVVPGSVFGESGEGFIRCS--YATSLEQ 362 (378)
T ss_pred HHHHHC----CCccCCCCeeEEEEEecc-CCCC----CHHHHHHHHHHhCCEEEcCchhhCcCCCCeEEEE--eCCCHHH
Confidence 777654 344455666655543 32 1111 1345666765 789999873 2689999 5567899
Q ss_pred HHHHHHhhhccc
Q psy8199 634 IQHMTSAIFQTF 645 (965)
Q Consensus 634 i~~~~~~l~~~~ 645 (965)
+++.++++.+.+
T Consensus 363 l~~~l~~l~~~l 374 (378)
T PRK07682 363 LQEAMKRMKRFV 374 (378)
T ss_pred HHHHHHHHHHHH
Confidence 999998887644
|
|
| >PRK03158 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.1e-20 Score=210.28 Aligned_cols=315 Identities=12% Similarity=0.140 Sum_probs=207.4
Q ss_pred cccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHH
Q psy8199 254 KRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKM 333 (965)
Q Consensus 254 ~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~ 333 (965)
..++|+.++. .++| .+|.+.+|+.++++...+ ++.....++.+.+++.++.+.+++++++|+++++..+++.
T Consensus 29 ~~~i~l~~n~--~~~~-~~~~v~~a~~~~~~~~~~-----~p~~g~~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~~ 100 (359)
T PRK03158 29 EKIVKLASNE--NPYG-PSPKVKEAIAAHLDELAL-----YPDGYAPELRTKVAKHLGVDEEQLLFGAGLDEVIQMISRA 100 (359)
T ss_pred CceEEecCCC--CCCC-CCHHHHHHHHHHHHHhhc-----CCCCcHHHHHHHHHHHhCCCHHHEEECCCHHHHHHHHHHH
Confidence 3678987774 3477 488999999988776432 2333455677777777766678999999999999888776
Q ss_pred HHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHH
Q psy8199 334 SFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEI 413 (965)
Q Consensus 334 a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~ 413 (965)
... +++.|++.+++|+++...+...+ ..+..+|... .. .|++++++
T Consensus 101 ~~~--------~gd~v~~~~p~y~~~~~~~~~~g-------------~~~~~~~~~~--~~-----------~d~~~l~~ 146 (359)
T PRK03158 101 LLN--------PGTNTVMAEPTFSQYRHNAIIEG-------------AEVREVPLKD--GG-----------HDLEAMLK 146 (359)
T ss_pred HhC--------CCCEEEEcCCCHHHHHHHHHHcC-------------CeEEEEecCC--CC-----------cCHHHHHH
Confidence 532 56889999999988643322211 1233444321 11 25777777
Q ss_pred HHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccc-cccccccCCCccee---ee
Q psy8199 414 LLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK-FFACEHAEIWPDFL---CL 489 (965)
Q Consensus 414 ~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~-~~~~~~~~~~pDiv---t~ 489 (965)
.+. +++.++++.. ++|++|.+.+ .+.+.++.+.|+ +|+++|+||+|..|-..+. .......+-.+.++ +|
T Consensus 147 ~~~---~~~~~v~i~~-p~NPtG~~~~-~~~l~~~~~~~~-~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~ 220 (359)
T PRK03158 147 AID---EQTKIVWICN-PNNPTGTYVN-HEELLSFLESVP-SHVLVVLDEAYYEYVTAEDYPDTLPLLEKYENLIVLRTF 220 (359)
T ss_pred hcC---CCCCEEEEeC-CCCCCCCCCC-HHHHHHHHHhCC-CCcEEEEECchHhhcCCcccccHHHHHHhcCCEEEEEec
Confidence 664 2344455444 4999998875 444555555553 6999999999987632221 11111112122332 78
Q ss_pred ccccC-CCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHH----HHHHHHHHHH
Q psy8199 490 SKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRI----SQDMKKITKA 564 (965)
Q Consensus 490 sK~l~-gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~----~~~~~~l~~~ 564 (965)
||.++ .| +|+|++++++++++.+.. ...+++.++++++++.++|+ +.++.+++ +++.+++.+.
T Consensus 221 SK~~g~~G-lRiG~~v~~~~~~~~~~~--------~~~~~~~~~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~ 288 (359)
T PRK03158 221 SKAYGLAA-LRVGYGIASEELIEKLNI--------ARPPFNTTRIAQYAAIAALE---DQAFLKECVEKNAEGLEQYYAF 288 (359)
T ss_pred hHhhcCcc-hhhehhcCCHHHHHHHHH--------hcCCCCCCHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHH
Confidence 99987 45 899999999999988865 12356789999999999985 23333333 3344444444
Q ss_pred HHcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec-----CCEEEEeCCcccCHHHHHHHHH
Q psy8199 565 LTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-----GNTVYLMPPYILNKNEIQHMTS 639 (965)
Q Consensus 565 L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-----~~~lR~~p~~~~t~~~i~~~~~ 639 (965)
|++ + ++..+++.|.++++.+. .+ ...+.+.|.++||.+.|+ .+++||+ ..+.++.+.+++
T Consensus 289 l~~---~-~~~~~~~~g~~i~~~~~-~~-------~~~~~~~l~~~gv~v~~g~~f~~~~~iRi~---~~~~~~~~~l~~ 353 (359)
T PRK03158 289 CKE---Y-GLFYYPSQTNFIFVDTG-RD-------ANELFEALLKKGYIVRSGAALGFPTGVRIT---IGLKEQNDKIIE 353 (359)
T ss_pred HHH---C-CCeeCCCcCcEEEEECC-CC-------HHHHHHHHHHCCeEEeeCCCCCCCCeEEEe---cCCHHHHHHHHH
Confidence 443 2 34455667887776653 11 346778888999999984 3689999 458889999998
Q ss_pred hhhc
Q psy8199 640 AIFQ 643 (965)
Q Consensus 640 ~l~~ 643 (965)
++++
T Consensus 354 al~~ 357 (359)
T PRK03158 354 LLKE 357 (359)
T ss_pred HHHH
Confidence 8865
|
|
| >PRK08153 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.3e-20 Score=210.00 Aligned_cols=323 Identities=11% Similarity=0.131 Sum_probs=211.8
Q ss_pred CCc-ccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHH
Q psy8199 252 SGK-RYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVA 330 (965)
Q Consensus 252 dG~-~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~A 330 (965)
.|+ .++++..|. .++| .+|++.+++.+.+.....| +.....+|.+.+++.++.+.++|++++|+++++..+
T Consensus 29 ~g~~~~~~l~~~~--~~~~-~~~~~~~a~~~~~~~~~~Y-----~~~~~~~Lr~~ia~~~~~~~~~I~it~G~~~~l~~~ 100 (369)
T PRK08153 29 RGRPFRARIGANE--SGFG-PSPSVIAAMREAAAEIWKY-----GDPENHDLRHALAAHHGVAPENIMVGEGIDGLLGLI 100 (369)
T ss_pred cCCcceeEecCCC--CCCC-CCHHHHHHHHHHHHHhhcC-----CCCccHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHH
Confidence 454 456887663 3455 5888999998876543222 222256788888888876678999999999999998
Q ss_pred HHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHH
Q psy8199 331 LKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFD 410 (965)
Q Consensus 331 l~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 410 (965)
++.... +++.|++.+++|.++.......+. .+..+|.... . .|+++
T Consensus 101 ~~~~~~--------~gd~vlv~~p~y~~~~~~~~~~g~-------------~~~~vp~~~~--~-----------~~~~~ 146 (369)
T PRK08153 101 VRLYVE--------PGDPVVTSLGAYPTFNYHVAGFGG-------------RLVTVPYRDD--R-----------EDLDA 146 (369)
T ss_pred HHHhcC--------CCCEEEECCCcchHHHHHHHHcCC-------------eEEEeeCCCC--C-----------CCHHH
Confidence 886543 568899999999887432222111 2233332111 0 25666
Q ss_pred HHHHHHhCCCcEEEE-EEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCccee--
Q psy8199 411 LEILLKKNHNKIAAI-IIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL-- 487 (965)
Q Consensus 411 le~~l~~~~~~~aai-i~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDiv-- 487 (965)
+++.+.. .++.+| +++| +|++|.+. +.+.+.++.+.|++ ++++|+||+|..|+..|....+. ...|+++
T Consensus 147 l~~~~~~--~~~~~i~l~~P--~NPtG~~~-~~~~l~~l~~~~~~-~~~lI~DE~y~~~~~~~~~~~~~--~~~~~~i~~ 218 (369)
T PRK08153 147 LLDAARR--ENAPLVYLANP--DNPMGSWH-PAADIVAFIEALPE-TTLLVLDEAYCETAPAGAAPPID--TDDPNVIRM 218 (369)
T ss_pred HHHHhcc--cCCcEEEEeCC--CCCCCCCC-CHHHHHHHHHhCCC-CcEEEEeCchhhhcCcccchhhh--hcCCCEEEE
Confidence 6655532 233444 4566 89999877 56667788887774 99999999999886544322111 1235554
Q ss_pred -eeccccC-CCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Q psy8199 488 -CLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKAL 565 (965)
Q Consensus 488 -t~sK~l~-gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L 565 (965)
+|||.++ .| +++|++++++++++.+.. ...+++.++++++++.++|+ ++.+.+++++..+..++.+
T Consensus 219 ~SfSK~~g~~G-lRiG~~v~~~~~~~~l~~--------~~~~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~r~~~ 286 (369)
T PRK08153 219 RTFSKAYGLAG-ARVGYAIGAPGTIKAFDK--------VRNHFGMNRIAQAAALAALK---DQAYLAEVVGKIAAARDRI 286 (369)
T ss_pred ecchHhccCcc-hheeeeecCHHHHHHHHH--------hhcCCCCCHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHH
Confidence 7899987 45 899999999999988865 12356789999999999985 3344444444444444444
Q ss_pred Hcc-cCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEe-ec----CCEEEEeCCcccCHHHHHHHHH
Q psy8199 566 TSL-ITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLR-PI----GNTVYLMPPYILNKNEIQHMTS 639 (965)
Q Consensus 566 ~~l-~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~-~~----~~~lR~~p~~~~t~~~i~~~~~ 639 (965)
.+. ... ++...++.|.++.+.+. .+ ...+..+.+.|.++||.++ |+ .+++|++ ..++++++.+++
T Consensus 287 ~~~L~~~-g~~~~p~~~~f~~~~~~-~~----~~~a~~l~~~l~~~Gi~v~~p~~~~~~~~iRis---~~~~~~~~~~~~ 357 (369)
T PRK08153 287 AAIARAN-GLTPLPSATNFVAIDCG-RD----GAFARAVLDGLIARDIFVRMPGVAPLDRCIRVS---CGPDEELDLFAE 357 (369)
T ss_pred HHHHHHC-CCccCCCcCcEEEEECC-CC----cccHHHHHHHHHHCCeEEeeCCCCCCCCeEEEe---cCCHHHHHHHHH
Confidence 332 222 33334556667666553 11 2345678888999999996 42 2689999 347899999999
Q ss_pred hhhccc
Q psy8199 640 AIFQTF 645 (965)
Q Consensus 640 ~l~~~~ 645 (965)
++.+..
T Consensus 358 al~~~~ 363 (369)
T PRK08153 358 ALPEAL 363 (369)
T ss_pred HHHHHH
Confidence 887654
|
|
| >PLN00175 aminotransferase family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.6e-19 Score=205.76 Aligned_cols=335 Identities=11% Similarity=0.100 Sum_probs=221.8
Q ss_pred CcccccccccchhccCCCCCHHHHHHHHHHHhhc-cccccCCCCcHHHHHHHHHHHhhcCC--CCC-eEEEcCChhHHHH
Q psy8199 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKL-EHVMLSNLTHKPVIKLSEKLSSLTQY--KLG-HCFYGSDGASAVE 328 (965)
Q Consensus 253 G~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~-~~~~~~~~~~~~~~~la~~l~~~~~~--~~~-~v~~~~sGseA~~ 328 (965)
+...+|+..|... +. .++.+.+++.+.++.. ..|....+..+.+..+++.+.+..+. +.+ ++++|+|+++|+.
T Consensus 53 ~~~~i~l~~G~P~--~~-~~~~~~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~vt~G~~~al~ 129 (413)
T PLN00175 53 KHGAINLGQGFPN--FD-GPDFVKEAAIQAIRDGKNQYARGFGVPELNSAIAERFKKDTGLVVDPEKEVTVTSGCTEAIA 129 (413)
T ss_pred cCCeEecCCCCCC--CC-CCHHHHHHHHHHHhcCCCCcCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCHHHHHH
Confidence 3467888887553 22 4788899998887652 34444445667778888888776543 344 6999999999999
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHH
Q psy8199 329 VALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAI 408 (965)
Q Consensus 329 ~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 408 (965)
.++.... .+++.|++.+++|.++.......+. .+..++....... .|+
T Consensus 130 ~~~~~l~--------~~gd~Vlv~~P~y~~~~~~~~~~g~-------------~~~~v~~~~~~~~-----------~~~ 177 (413)
T PLN00175 130 ATILGLI--------NPGDEVILFAPFYDSYEATLSMAGA-------------KIKTVTLRPPDFA-----------VPE 177 (413)
T ss_pred HHHHHhC--------CCCCEEEEeCCCchhHHHHHHHcCC-------------EEEEEECCcccCC-----------CCH
Confidence 9888653 2568899999999777433222221 2334443211111 257
Q ss_pred HHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccc-cccCCCccee
Q psy8199 409 FDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFAC-EHAEIWPDFL 487 (965)
Q Consensus 409 ~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~-~~~~~~pDiv 487 (965)
++|++.+.. ++.+|++.. ++|++|.+. +.+.+++|.++|++||+++|+||+|..|...+..... +..+..+.++
T Consensus 178 ~~l~~~~~~---~~k~i~i~~-p~NPtG~~~-s~~~l~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~s~~~~~~~~~~vi 252 (413)
T PLN00175 178 DELKAAFTS---KTRAILINT-PHNPTGKMF-TREELELIASLCKENDVLAFTDEVYDKLAFEGDHISMASLPGMYERTV 252 (413)
T ss_pred HHHHHhcCc---CceEEEecC-CCCCCCcCC-CHHHHHHHHHHHHHcCcEEEEecccCccccCCcccChhhCCCCcCcEE
Confidence 888887752 455666665 689999766 7888999999999999999999999877443332221 2223233333
Q ss_pred ---eeccccC-CCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHH
Q psy8199 488 ---CLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK--DNILQRISQDMKKI 561 (965)
Q Consensus 488 ---t~sK~l~-gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~--~~~~~~~~~~~~~l 561 (965)
+|||.++ .| +++|++++++++++.+.. .....+++.+++++.++.++|+..+. ++..+.++++.+.+
T Consensus 253 ~i~SfSK~~~~~G-~RiG~~v~~~~l~~~l~~------~~~~~~~~~s~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~l 325 (413)
T PLN00175 253 TMNSLGKTFSLTG-WKIGWAIAPPHLTWGVRQ------AHSFLTFATATPMQWAAVAALRAPESYYEELKRDYSAKKDIL 325 (413)
T ss_pred EEecchhhccCcc-hheeeeEeCHHHHHHHHH------HHhhccCCCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 6899887 45 899999999999888765 22234677889999999888853211 23455566666677
Q ss_pred HHHHHcccCCCceeeeeceeEEE-EEEEeecCccchhhHHHHHHHHHH-HcCcEEeec----------CCEEEEeCCccc
Q psy8199 562 TKALTSLITHPKIINFRQKGMIW-AFDVIIEDPEQIETFSKKFFVAAL-KNELLLRPI----------GNTVYLMPPYIL 629 (965)
Q Consensus 562 ~~~L~~l~~~~~i~~v~g~G~~~-~i~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~----------~~~lR~~p~~~~ 629 (965)
.+.|++. ++....+.|.|+ ++.+. ..+ ......+.+.|+ ++||.+.|+ .+++||+ +..
T Consensus 326 ~~~L~~~----g~~~~~p~g~~f~~~~~~-~~~---~~~~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~~~iRls--~~~ 395 (413)
T PLN00175 326 VEGLKEV----GFKVYPSSGTYFVMVDHT-PFG---FENDIAFCEYLIEEVGVAAIPPSVFYLNPEDGKNLVRFA--FCK 395 (413)
T ss_pred HHHHHHC----CCeecCCCeeEEEEEecc-ccC---CCCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCCEEEEE--EcC
Confidence 7777653 344455666654 44332 111 011345667775 679998863 1589999 556
Q ss_pred CHHHHHHHHHhhhcc
Q psy8199 630 NKNEIQHMTSAIFQT 644 (965)
Q Consensus 630 t~~~i~~~~~~l~~~ 644 (965)
+++++++.++++.+.
T Consensus 396 ~~e~l~~~~~rL~~~ 410 (413)
T PLN00175 396 DEETLRAAVERMKTK 410 (413)
T ss_pred CHHHHHHHHHHHHHH
Confidence 899999999888654
|
|
| >PRK06108 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.6e-19 Score=205.24 Aligned_cols=334 Identities=12% Similarity=0.067 Sum_probs=219.8
Q ss_pred ccccccccchhccCCCCCHHHHHHHHHHHhhc-cccccCCCCcHHHHHHHHHHHhhcC--CCCCeEEEcCChhHHHHHHH
Q psy8199 255 RYLDAISSWWVNLFGHSNSYINKALKNQLNKL-EHVMLSNLTHKPVIKLSEKLSSLTQ--YKLGHCFYGSDGASAVEVAL 331 (965)
Q Consensus 255 ~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~-~~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~~~sGseA~~~Al 331 (965)
..+++..|... ++ .++.+.+++.+.+... ..|....+..+.+..+++.+.+..+ ...+++++++||++|+..++
T Consensus 25 ~~i~l~~g~~~--~~-~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~al~~~~ 101 (382)
T PRK06108 25 GVLPLWFGESD--LP-TPDFIRDAAAAALADGETFYTHNLGIPELREALARYVSRLHGVATPPERIAVTSSGVQALMLAA 101 (382)
T ss_pred CeEEecCCCCC--CC-CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCcCcceEEEeCChHHHHHHHH
Confidence 46787776542 33 3788999998887653 2344445567788888888887765 46689999999999999998
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCC-CCCCCCCChhHHHHHHHHH
Q psy8199 332 KMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDS-RNINKGNSANEIARCAIFD 410 (965)
Q Consensus 332 ~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~~ 410 (965)
+.... +++.|++.+++|..+.......+ ..+..+|.... .... .|+++
T Consensus 102 ~~l~~--------~gd~vl~~~p~y~~~~~~~~~~g-------------~~~~~v~~~~~~~~~~----------~d~~~ 150 (382)
T PRK06108 102 QALVG--------PGDEVVAVTPLWPNLVAAPKILG-------------ARVVCVPLDFGGGGWT----------LDLDR 150 (382)
T ss_pred HHhcC--------CCCEEEEeCCCccchHHHHHHCC-------------CEEEEeeCCCCCCCcc----------CCHHH
Confidence 87643 56789999999976632222111 12333333210 0000 26788
Q ss_pred HHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcc-ccc-cc-ccccCCCccee
Q psy8199 411 LEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRT-GKF-FA-CEHAEIWPDFL 487 (965)
Q Consensus 411 le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~-G~~-~~-~~~~~~~pDiv 487 (965)
|++.+. .++.+|++.. ++|++|.+. +.+.+++|.++|+++|+++|+||+|.+|... +.. .. .......+.++
T Consensus 151 l~~~~~---~~~~~i~l~~-p~NPtG~~~-~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i 225 (382)
T PRK06108 151 LLAAIT---PRTRALFINS-PNNPTGWTA-SRDDLRAILAHCRRHGLWIVADEVYERLYYAPGGRAPSFLDIAEPDDRII 225 (382)
T ss_pred HHHhcC---ccceEEEEEC-CCCCCCccc-CHHHHHHHHHHHHHCCcEEEEehhhhhhccCCCCCCCCHhhcCCCcCCEE
Confidence 887774 2345555555 589999775 7888999999999999999999999987432 111 11 11111122333
Q ss_pred ---eeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHH
Q psy8199 488 ---CLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK--DNILQRISQDMKKIT 562 (965)
Q Consensus 488 ---t~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~--~~~~~~~~~~~~~l~ 562 (965)
+|||.++.+++++|++++++++++.+.. .....+++.++++++++.++|+...+ ++..++++++.+++.
T Consensus 226 ~~~S~SK~~g~~G~RiG~~~~~~~~~~~~~~------~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~ 299 (382)
T PRK06108 226 FVNSFSKNWAMTGWRLGWLVAPPALGQVLEK------LIEYNTSCVAQFVQRAAVAALDEGEDFVAELVARLRRSRDHLV 299 (382)
T ss_pred EEeechhhccCcccceeeeeCCHHHHHHHHH------HHHhcccCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHH
Confidence 6899886322899999999999888764 12234566788999999888863211 234555666666666
Q ss_pred HHHHcccCCCceeeeeceeEEE-EEEEeecCccchhhHHHHHHHHHH-HcCcEEeec-------CCEEEEeCCcccCHHH
Q psy8199 563 KALTSLITHPKIINFRQKGMIW-AFDVIIEDPEQIETFSKKFFVAAL-KNELLLRPI-------GNTVYLMPPYILNKNE 633 (965)
Q Consensus 563 ~~L~~l~~~~~i~~v~g~G~~~-~i~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~-------~~~lR~~p~~~~t~~~ 633 (965)
+.|+++ +++....+.|.++ .+.+. +.. ....+.+.|+ ++||.+.|+ .+++|++... ++++
T Consensus 300 ~~L~~~---~~~~~~~p~~g~~~~~~l~--~~~----~~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~Ris~~~--~~~~ 368 (382)
T PRK06108 300 DALRAL---PGVEVAKPDGAMYAFFRIP--GVT----DSLALAKRLVDEAGLGLAPGTAFGPGGEGFLRWCFAR--DPAR 368 (382)
T ss_pred HHHHhC---CCCcccCCCeeEEEEEeCC--CCC----CHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecC--CHHH
Confidence 666544 4555555665544 55553 111 1335667664 689999773 2689999665 8899
Q ss_pred HHHHHHhhhcc
Q psy8199 634 IQHMTSAIFQT 644 (965)
Q Consensus 634 i~~~~~~l~~~ 644 (965)
++++++++.+.
T Consensus 369 l~~~l~~l~~~ 379 (382)
T PRK06108 369 LDEAVERLRRF 379 (382)
T ss_pred HHHHHHHHHHH
Confidence 99999887653
|
|
| >PRK07324 transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.5e-20 Score=205.12 Aligned_cols=334 Identities=14% Similarity=0.121 Sum_probs=210.6
Q ss_pred EEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhc-cccccCCCCcHHHHHHHHHHHhhcC-CCCCeEEEcCChhH
Q psy8199 248 LITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKL-EHVMLSNLTHKPVIKLSEKLSSLTQ-YKLGHCFYGSDGAS 325 (965)
Q Consensus 248 ~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~-~~~~~~~~~~~~~~~la~~l~~~~~-~~~~~v~~~~sGse 325 (965)
-+|..|..++++..|-. .+. .++.+ +|+.+++... ..|....+. .+|.+.+++++. .+.++|++|+|+++
T Consensus 20 ~~~~~~~~~~~~~~~e~--~~~-~~~~~-~~~~~~~~~~~~~Y~~~~G~----~~lr~~ia~~~~~~~~~~vi~t~G~~~ 91 (373)
T PRK07324 20 TYDIAESCIDSLTLEEL--LAL-AGKNP-EAFYQELGQKKLTYGWIEGS----PEFKEAVASLYQNVKPENILQTNGATG 91 (373)
T ss_pred ccccccCCCCCCcHHHH--Hhc-cCcch-HHHHHHHhcCCccCCCCCCC----HHHHHHHHHHhcCCChhhEEEcCChHH
Confidence 45666777777755422 122 45566 8887777653 222222233 355555555542 35689999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHH
Q psy8199 326 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIAR 405 (965)
Q Consensus 326 A~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (965)
|+..++..... ++++|++..++|..+.......+ ..+..+|.....+..
T Consensus 92 al~~~~~~l~~--------~gd~Vl~~~P~y~~~~~~~~~~g-------------~~v~~v~~~~~~~~~---------- 140 (373)
T PRK07324 92 ANFLVLYALVE--------PGDHVISVYPTYQQLYDIPESLG-------------AEVDYWQLKEENGWL---------- 140 (373)
T ss_pred HHHHHHHHhCC--------CCCEEEEcCCCchhHHHHHHHcC-------------CEEEEEecccccCCC----------
Confidence 99999886642 56889999999877632222221 123444432111110
Q ss_pred HHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcc
Q psy8199 406 CAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPD 485 (965)
Q Consensus 406 ~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pD 485 (965)
.|++++++++. +++.+|++.. ++|++|.+. +++.+++|.++|++||+++|+||+|.++...+..... ....++
T Consensus 141 ~d~~~l~~~~~---~~~kli~i~~-p~NPtG~~~-~~~~l~~i~~~a~~~~~~ii~De~y~~l~~~~~~~s~--~~~~~~ 213 (373)
T PRK07324 141 PDLDELRRLVR---PNTKLICINN-ANNPTGALM-DRAYLEEIVEIARSVDAYVLSDEVYRPLDEDGSTPSI--ADLYEK 213 (373)
T ss_pred CCHHHHHHhCC---CCCcEEEEeC-CCCCCCCCC-CHHHHHHHHHHHHHCCCEEEEEccccccccCCCCCCh--hhccCC
Confidence 25677877664 2445566655 589999766 7788999999999999999999999987554322111 112233
Q ss_pred e---eeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHH----HHHH
Q psy8199 486 F---LCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRI----SQDM 558 (965)
Q Consensus 486 i---vt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~----~~~~ 558 (965)
. -+|||.++..++++|++++++++++.+.. .....+++.+++++.+|..+|+.. +.+.++. +++.
T Consensus 214 ~I~~~s~SK~~~~~G~RiG~i~~~~~li~~~~~------~~~~~~~~~~~~~q~~a~~~l~~~--~~~l~~~~~~~~~~~ 285 (373)
T PRK07324 214 GISTNSMSKTYSLPGIRVGWIAANEEVIDILRK------YRDYTMICAGVFDDMLASLALEHR--DAILERNRKIVRTNL 285 (373)
T ss_pred EEEEecchhhcCCccceeEEEecCHHHHHHHHH------HhCcEEecCChHHHHHHHHHHcCH--HHHHHHHHHHHHHHH
Confidence 2 37899887322899999999999988875 233456677889998888887521 2233333 3344
Q ss_pred HHHHHHHHcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHH-HcCcEEeecC-----CEEEEeCCcccCHH
Q psy8199 559 KKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAAL-KNELLLRPIG-----NTVYLMPPYILNKN 632 (965)
Q Consensus 559 ~~l~~~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~~-----~~lR~~p~~~~t~~ 632 (965)
+.+.+.|+ +.+++..+.+.|.++.+... .... ...+++++|+ +.||.+.|+. +++|++ +..+++
T Consensus 286 ~~l~~~l~---~~~~~~~~~p~gg~~~~i~~-~~~~----~~~~~~~~ll~~~gv~v~pg~~F~~~~~iRis--~~~~~~ 355 (373)
T PRK07324 286 AILDEWVA---KEPRVSYVKPKAVSTSFVKL-DVDM----PSEDFCLKLLKETGVLLVPGNRFDLEGHVRIG--YCCDTE 355 (373)
T ss_pred HHHHHHHh---cCCCceEECCCceEEEEEEe-CCCC----CHHHHHHHHHHhcCEEEECccccCCCCeEEEE--ecCCHH
Confidence 44444443 34566666777654433322 1111 1335666654 7799999863 689999 667888
Q ss_pred HHHHHHHhhhccc
Q psy8199 633 EIQHMTSAIFQTF 645 (965)
Q Consensus 633 ~i~~~~~~l~~~~ 645 (965)
.+.+.++++.+.+
T Consensus 356 ~l~~~l~rl~~~l 368 (373)
T PRK07324 356 TLKKGLKKLSEFL 368 (373)
T ss_pred HHHHHHHHHHHHH
Confidence 8999988887654
|
|
| >TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.1e-20 Score=216.09 Aligned_cols=183 Identities=19% Similarity=0.273 Sum_probs=155.8
Q ss_pred EeEeeccCCCCCCCCCCCCCCcCCCCcccccCCCHHHHHHHHHHHHHC--CCCEEEEeeccCCCCcccHHHHHHHHHHHH
Q psy8199 683 VLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSD--GATRFCMGAAWRELKDRDLDNIENMICEVK 760 (965)
Q Consensus 683 ~~i~~~s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~--g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~ 760 (965)
..+.. |+|||++|.||+.+..... ..++.+++|.|+++++.+.+. |++.+.+.+..+. .+.+++.++++.++
T Consensus 198 ~~i~t-sRGCp~~C~FC~~~~~~~g--~~~r~rs~e~V~~Ei~~~~~~~~~~~~i~f~Dd~f~---~~~~~~~~l~~~l~ 271 (472)
T TIGR03471 198 ISLYT-GRGCPSKCTFCLWPQTVGG--HRYRTRSAESVIEEVKYALENFPEVREFFFDDDTFT---DDKPRAEEIARKLG 271 (472)
T ss_pred EEEEe-cCCCCCCCCCCCCCccCCC--CceEeCCHHHHHHHHHHHHHhcCCCcEEEEeCCCCC---CCHHHHHHHHHHHh
Confidence 34555 9999999999986643222 246778999999999988875 7899998766433 34567777777777
Q ss_pred hcCcEeEEec-CCCCHHHHHHHHHhCCCeEeccCCC-CHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEec-CCC
Q psy8199 761 KIGLETCLTL-GMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL-SES 837 (965)
Q Consensus 761 ~~~~~i~~~~-~~~~~e~l~~Lk~aG~~~i~i~~es-~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl-~et 837 (965)
+.++.+.+.. ..++++.++.|+++|+.++.+|+|| +++.++.++++++.++..++++.++++|+.+..++|+|+ +||
T Consensus 272 ~~~i~~~~~~~~~~~~e~l~~l~~aG~~~v~iGiES~s~~~L~~~~K~~~~~~~~~~i~~~~~~Gi~v~~~~IiGlPget 351 (472)
T TIGR03471 272 PLGVTWSCNARANVDYETLKVMKENGLRLLLVGYESGDQQILKNIKKGLTVEIARRFTRDCHKLGIKVHGTFILGLPGET 351 (472)
T ss_pred hcCceEEEEecCCCCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEEEEEEEeCCCCC
Confidence 7776654432 3479999999999999999999999 999999999999999999999999999999999999999 799
Q ss_pred HHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCC
Q psy8199 838 RDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYG 873 (965)
Q Consensus 838 ~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~ 873 (965)
.+++.++++++.+++ ++.+.++.++|.||||+++
T Consensus 352 ~e~~~~ti~~~~~l~--~~~~~~~~l~P~PGT~l~~ 385 (472)
T TIGR03471 352 RETIRKTIDFAKELN--PHTIQVSLAAPYPGTELYD 385 (472)
T ss_pred HHHHHHHHHHHHhcC--CCceeeeecccCCCcHHHH
Confidence 999999999999999 8999999999999999874
|
One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift. |
| >TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.1e-20 Score=209.94 Aligned_cols=201 Identities=12% Similarity=0.186 Sum_probs=163.2
Q ss_pred EeEeeccCCCCCCCCCCCCCCcCCCCcccccCCCHHHHHHHHHHHHHCCCCEEEEeeccCCCCccc---HHHHHHHHHHH
Q psy8199 683 VLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRD---LDNIENMICEV 759 (965)
Q Consensus 683 ~~i~~~s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~---~~~~~~~~~~i 759 (965)
..+.+ |+|||++|.||..+...+ +++.+++++|+++++.+.+.|++++.|++........+ ..++.++++.+
T Consensus 140 ~~i~i-srGCp~~CsfC~~~~~~g----~~r~r~~e~I~~Ei~~l~~~g~~ei~l~~~~~~~y~~d~~~~~~l~~Ll~~l 214 (414)
T TIGR01579 140 AFIKV-QDGCNFFCSYCIIPFARG----RSRSVPMEAILKQVKILVAKGYKEIVLTGVNLGSYGDDLKNGTSLAKLLEQI 214 (414)
T ss_pred EEEEe-ccCcCCCCCCCceeeecC----CCccCCHHHHHHHHHHHHHCCCceEEEeeEccchhccCCCCCCcHHHHHHHH
Confidence 45677 999999999998765332 46678999999999999999999999987543211111 24567777777
Q ss_pred Hhc-Cc-EeE---EecCCCCHHHHHHHHHhC--CCeEeccCCC-CHHHHhcccCCCCHHHHHHHHHHHHH--cCCceeee
Q psy8199 760 KKI-GL-ETC---LTLGMLNENQAYRLKKVG--LDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRN--VGINICCG 829 (965)
Q Consensus 760 ~~~-~~-~i~---~~~~~~~~e~l~~Lk~aG--~~~i~i~~es-~~~~~~~i~~~~~~~~~~~~i~~~~~--~Gi~v~~~ 829 (965)
++. ++ .+. +++..++++.++.|+++| +.++++++|| ++++++.|+++++.+++.++++.+++ .|+.+.++
T Consensus 215 ~~~~~~~~ir~~~~~p~~~~~ell~~m~~~~~~~~~l~lglESgs~~vLk~m~R~~~~~~~~~~v~~l~~~~~gi~i~~~ 294 (414)
T TIGR01579 215 LQIPGIKRIRLSSIDPEDIDEELLEAIASEKRLCPHLHLSLQSGSDRVLKRMRRKYTRDDFLKLVNKLRSVRPDYAFGTD 294 (414)
T ss_pred hcCCCCcEEEEeCCChhhCCHHHHHHHHhcCccCCCeEECCCcCChHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeeeee
Confidence 653 32 222 245667999999999987 8899999999 99999999999999999999999999 89999999
Q ss_pred EEEec-CCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCCCC-CCCHHHHHHHHHHHH
Q psy8199 830 GIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSS-ILDPLEFIRTIAVAR 890 (965)
Q Consensus 830 ~i~Gl-~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~~~-~~~~~~~~~~ia~~R 890 (965)
+|+|+ |||.|++.++++++.+++ ++.+.++.|.|.||||++..+ ..+.....+.....+
T Consensus 295 ~IvG~PgET~ed~~~tl~~i~~~~--~~~~~~~~~sp~pGT~~~~~~~~v~~~~~~~r~~~l~ 355 (414)
T TIGR01579 295 IIVGFPGESEEDFQETLRMVKEIE--FSHLHIFPYSARPGTPASTMKDKVPETIKKERVKRLK 355 (414)
T ss_pred EEEECCCCCHHHHHHHHHHHHhCC--CCEEEeeecCCCCCCchhhCCCCCCHHHHHHHHHHHH
Confidence 99999 799999999999999999 999999999999999999865 456654444444333
|
This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium. |
| >COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.8e-20 Score=199.60 Aligned_cols=342 Identities=15% Similarity=0.139 Sum_probs=221.3
Q ss_pred ccccccccchhccCCCCCHHHHHHHHHHHhhc-c-c--cccCC-CCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHH
Q psy8199 255 RYLDAISSWWVNLFGHSNSYINKALKNQLNKL-E-H--VMLSN-LTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEV 329 (965)
Q Consensus 255 ~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~-~-~--~~~~~-~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~ 329 (965)
-|+|..+... -+|++++++...+... + . .+..+ ......++..+.+++.++...++++||+||||++..
T Consensus 3 iYlD~~ATTp------~~~~v~~~m~~~~~~~fgNPsS~H~~G~~A~~~ve~AR~~iA~llga~~~eIiFTSG~TEsnNl 76 (386)
T COG1104 3 IYLDNAATTP------VDPEVLEAMLPYLTEVFGNPSSLHSFGREARKAVEEAREQIAKLLGADPEEIIFTSGATESNNL 76 (386)
T ss_pred ccccccccCC------CCHHHHHHHHHHHHhhcCCccchhHhHHHHHHHHHHHHHHHHHHhCCCCCeEEEecCCcHHHHH
Confidence 5999988765 5899999999988764 1 1 11111 123445667778899998888999999999999999
Q ss_pred HHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHH
Q psy8199 330 ALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIF 409 (965)
Q Consensus 330 Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 409 (965)
||+.+....+.+ .++.+||+. ..-|-....+.... .....++.++|... .+. .|++
T Consensus 77 aI~g~~~a~~~~--~~~~HIIts-~iEH~aVl~~~~~L---------e~~g~~Vtyl~V~~-~G~-----------v~~e 132 (386)
T COG1104 77 AIKGAALAYRNA--QKGKHIITS-AIEHPAVLNTCRYL---------ERQGFEVTYLPVDS-NGL-----------VDLE 132 (386)
T ss_pred HHHhhHHhhhcc--cCCCeEEEc-ccccHHHHHHHHHH---------HhcCCeEEEeCCCC-CCe-----------EcHH
Confidence 999754432221 234555554 35555433322211 11234566666543 222 4899
Q ss_pred HHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcceeee
Q psy8199 410 DLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCL 489 (965)
Q Consensus 410 ~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~ 489 (965)
+|+++|+ +++..|-+-- +||++|+++| +++|.++|+++|+++++|-||+ +|+. ..+......|+++|
T Consensus 133 ~L~~al~---~~T~LVSim~-aNnE~G~IQp----I~ei~~i~k~~~i~fHvDAvQa-~Gki----pi~~~~~~vD~ls~ 199 (386)
T COG1104 133 QLEEALR---PDTILVSIMH-ANNETGTIQP----IAEIGEICKERGILFHVDAVQA-VGKI----PIDLEELGVDLLSF 199 (386)
T ss_pred HHHHhcC---CCceEEEEEe-cccCeeeccc----HHHHHHHHHHcCCeEEEehhhh-cCce----eccccccCcceEEe
Confidence 9999996 4466666666 8999999999 9999999999999999999996 8765 33333444799999
Q ss_pred ccccCCCcccceeeeecHHH-HHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh--cccHHHHHHHHHHHHHHHHH
Q psy8199 490 SKGITGGYLPLSLVMTTDKI-YNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN--KDNILQRISQDMKKITKALT 566 (965)
Q Consensus 490 sK~l~gG~~pig~v~~~~~i-~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~--~~~~~~~~~~~~~~l~~~L~ 566 (965)
|-.--+|.-.+|+++.++.+ ...+..+|.+.....++|- |..+.++..++++... .+...++++.++++|.+.|.
T Consensus 200 SaHK~~GpkGiGaLyv~~~~~~~p~i~GGgQE~g~RsGTe--nv~~Ivg~~~A~~~a~~~~~~~~~~~~~lr~~l~~~l~ 277 (386)
T COG1104 200 SAHKFGGPKGIGALYVRPGVRLEPLIHGGGQERGLRSGTE--NVPGIVGFGKAAEIAVEELEEENARLRKLRDRLEDGLL 277 (386)
T ss_pred ehhhccCCCceEEEEECCCCccCceeccCcCCCCCCCCCc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98666666789999987654 3444444444444555665 4555555555665433 24467888899999999997
Q ss_pred cccCCCcee---e-eeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEe------------------------ecC
Q psy8199 567 SLITHPKII---N-FRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLR------------------------PIG 618 (965)
Q Consensus 567 ~l~~~~~i~---~-v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~------------------------~~~ 618 (965)
+.. |.+. . .........+.+. . -..+.+...|..+||.+. ...
T Consensus 278 ~~~--p~~~~~g~~~~rlP~~~~~~f~--g-----v~gE~ll~~L~~~gI~vStGSACsS~~~~pShVL~AmG~~~e~a~ 348 (386)
T COG1104 278 EII--PDVYLNGDDEPRLPNILNFSFP--G-----VEGESLLLALDLAGIAVSTGSACSSGSLEPSHVLRAMGISEELAH 348 (386)
T ss_pred hcC--CcEEEcCCcccCCCCeEEEEeC--C-----CcHHHHHHhccccCeEEeccccccCCCCCccHHHHHcCCChHHhC
Confidence 641 1110 0 0111112222222 0 002223334444455443 223
Q ss_pred CEEEEeCCcccCHHHHHHHHHhhhcccccHHH
Q psy8199 619 NTVYLMPPYILNKNEIQHMTSAIFQTFNELDE 650 (965)
Q Consensus 619 ~~lR~~p~~~~t~~~i~~~~~~l~~~~~~~~e 650 (965)
+.|||+.....++++++.+++.+.+....+++
T Consensus 349 ~siR~S~g~~tt~eei~~~~~~l~~~i~~lr~ 380 (386)
T COG1104 349 GSIRFSLGRFTTEEEIDAAAEALKEIIKRLRE 380 (386)
T ss_pred ccEEEEcCCCCCHHHHHHHHHHHHHHHHHHhh
Confidence 68999999999999999999998876655443
|
|
| >TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-19 Score=199.93 Aligned_cols=298 Identities=11% Similarity=0.010 Sum_probs=197.6
Q ss_pred CCC-CCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCc
Q psy8199 268 FGH-SNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNK 346 (965)
Q Consensus 268 lGh-~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~ 346 (965)
||. .||+|.+|..+++++. ++.++...+|+++++++++.+.+++++++||++|+..++..... ++
T Consensus 30 lgl~~~~~~~~~~~~~~~~~------~g~~~~~~~Le~~lA~~~g~~~e~ilv~~gg~~a~~~~~~al~~--------~g 95 (346)
T TIGR03576 30 TGLAGGFKIDEEDLELLETY------VGPAIFEEKVQELGREHLGGPEEKILVFNRTSSAILATILALEP--------PG 95 (346)
T ss_pred ccCCCChhHHHHHHHHHHHh------cCCHHHHHHHHHHHHHHcCCCcceEEEECCHHHHHHHHHHHhCC--------CC
Confidence 444 4999999999998885 24668899999999999976668999999999999999986643 45
Q ss_pred eEEEEEc--CCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEE
Q psy8199 347 KKFICLQ--NSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAA 424 (965)
Q Consensus 347 ~~vi~~~--~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aa 424 (965)
++|++.. ..+|.+-.......+. ..+.. +++++++. . .+..+
T Consensus 96 d~Vli~~~d~p~~~s~~~~~~l~ga--------------~~~~~-----------------~~l~~l~~----~-~~~~l 139 (346)
T TIGR03576 96 RKVVHYLPEKPAHPSIPRSCKLAGA--------------EYFES-----------------DELSELKK----I-DGTSL 139 (346)
T ss_pred CEEEECCCCCCCchhHHHHHHHcCC--------------EEecc-----------------CCHHHHhh----C-cCceE
Confidence 6777532 2344442222222221 11111 12333322 1 23456
Q ss_pred EEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcc---cccccccccCCCccee--eeccccCCCccc
Q psy8199 425 IIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRT---GKFFACEHAEIWPDFL--CLSKGITGGYLP 499 (965)
Q Consensus 425 ii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~---G~~~~~~~~~~~pDiv--t~sK~l~gG~~p 499 (965)
|++++ .++.|.+. +.+.|++|.++|++||+++|+||+|.. |.. |.. ....++ +|++ ||||+|+| ++
T Consensus 140 Iiitg--~s~~G~v~-~~~~L~~i~~la~~~~~~livDEAy~~-~~~~~~~~~-~~~~~~--~divv~s~SKalaG--~r 210 (346)
T TIGR03576 140 VVITG--STMDLKVV-SEEDLKRVIKQAKSKEAIVLVDDASGA-RVRRLYGQP-PALDLG--ADLVVTSTDKLMDG--PR 210 (346)
T ss_pred EEEEC--CCCCCccc-CHHHHHHHHHHHHHcCCEEEEECCccc-cccccCCCC-CHHHcC--CcEEEeccchhccc--cc
Confidence 77777 57788775 466699999999999999999999963 222 221 112233 4655 68998877 68
Q ss_pred ceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcccCCCceeeeec
Q psy8199 500 LSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQ 579 (965)
Q Consensus 500 ig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g 579 (965)
+|++++++++++.+.. +.....++.+|++++++.++|+.+..+...+.++++.+.+.+.++.+ ...+.
T Consensus 211 ~G~v~~~~~li~~l~~------~~~~~~~s~~~~~~~aa~~aL~~~~~~~~~~~l~~r~~~~~~~l~~~------~~~~~ 278 (346)
T TIGR03576 211 GGLLAGRKELVDKIKS------VGEQFGLEAQAPLLAAVVRALEEFELSRIRDAFKRKEEVYLRLFDKL------NVERT 278 (346)
T ss_pred eEEEEeCHHHHHHHHH------hhcCcccCccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhC------CCCcC
Confidence 9999999999998876 12223344688899999999986544445666777777776666643 11222
Q ss_pred eeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec------CCEEEEeCCcccCHH---HHHHHHHhhhcc
Q psy8199 580 KGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI------GNTVYLMPPYILNKN---EIQHMTSAIFQT 644 (965)
Q Consensus 580 ~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~------~~~lR~~p~~~~t~~---~i~~~~~~l~~~ 644 (965)
.+.|+.+.+. .. ...+...+.|.++||+++|+ ++++||+ +...++ +.+.+++++++.
T Consensus 279 ~~~f~~~~~~-~~-----~~~~~~~~ll~~~gV~v~~~~~f~~~~~~vRis--~~~~~~~~~~~~~~~~al~~~ 344 (346)
T TIGR03576 279 PTGFVIKGVE-EE-----KLIEIGLDLLRNYGIITITAVGMPGASKTLRFD--LAAKDAERIGDDYLVEAVKDS 344 (346)
T ss_pred CCeEEEEeCC-CC-----CHHHHHHHHHHhCCEEEeCCcccCCCCCeEEEE--EecChHHhcCHHHHHHHHHhc
Confidence 3446555553 11 01223456677899999983 3689999 444443 688888887654
|
Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog. |
| >PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2e-19 Score=210.93 Aligned_cols=342 Identities=13% Similarity=0.128 Sum_probs=218.5
Q ss_pred cCCcccccccccchhccCCC-CCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcC--CCCCeEEEcCChhHHH
Q psy8199 251 FSGKRYLDAISSWWVNLFGH-SNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQ--YKLGHCFYGSDGASAV 327 (965)
Q Consensus 251 ~dG~~ylD~~~~~~~~~lGh-~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~~~sGseA~ 327 (965)
..|+.++++..|.. .++|. .++++++++.+++.....|....+..+.++.+++.+.+..+ ...++|++++|+++|+
T Consensus 143 ~~g~~~i~l~~G~p-~~~~~~~p~~~~~~~~~~~~~~~~Y~~~~G~~~lReaia~~~~~~~~~~~~~~~I~it~G~~eal 221 (517)
T PRK13355 143 AAGTHILKLNIGNP-APFGFRTPDEVVYDMAQQLTDTEGYSDSKGLFSARKAIMQYAQLKGLPNVDVDDIYTGNGVSELI 221 (517)
T ss_pred HcCCCeEEecCcCC-CcCCCCCCHHHHHHHHHHhhcCCCCCCCcChHHHHHHHHHHHHhcCCCCCChhHEEEeCcHHHHH
Confidence 46888999988754 45675 37789999988876554454444556667777777655432 3567999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCC-CCCCCCCChhHHHHH
Q psy8199 328 EVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDS-RNINKGNSANEIARC 406 (965)
Q Consensus 328 ~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 406 (965)
..++++... +++.|++.+++|..+...+...++ ..+.++.... .+. .
T Consensus 222 ~~~~~~l~~--------~Gd~Vli~~P~y~~y~~~~~~~g~-------------~~v~~~~~~~~~~~-----------~ 269 (517)
T PRK13355 222 NLSMSALLD--------DGDEVLIPSPDYPLWTACVNLAGG-------------TAVHYRCDEQSEWY-----------P 269 (517)
T ss_pred HHHHHHhCC--------CCCEEEEcCCCCcCHHHHHHHCCC-------------EEEEeecCcccCCC-----------C
Confidence 999886643 568899999999888544433332 1223332111 111 2
Q ss_pred HHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccc-cccccccCCCcc
Q psy8199 407 AIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK-FFACEHAEIWPD 485 (965)
Q Consensus 407 d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~-~~~~~~~~~~pD 485 (965)
|++++++++.. ...+.++++| +|++|.+. +.+.+++|.++|++||+++|+||+|..|-..|. +.... .+.||
T Consensus 270 d~~~l~~~~~~--~~k~i~i~nP--~NPTG~v~-~~~~l~~i~~~a~~~~~~ii~DE~Y~~~~~~~~~~~s~~--~~~~~ 342 (517)
T PRK13355 270 DIDDIRSKITS--RTKAIVIINP--NNPTGALY-PREVLQQIVDIAREHQLIIFSDEIYDRLVMDGLEHTSIA--SLAPD 342 (517)
T ss_pred CHHHHHHhcCc--CceEEEEECC--CCCCCcCc-CHHHHHHHHHHHHHcCcEEEEehhhhhhcCCCCCcccHH--HhCCC
Confidence 67888887752 2335566666 89999876 688899999999999999999999987744442 11111 12345
Q ss_pred e--e---eeccccCCCcccceeeeec--HHH----HHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc-ccHHH-
Q psy8199 486 F--L---CLSKGITGGYLPLSLVMTT--DKI----YNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK-DNILQ- 552 (965)
Q Consensus 486 i--v---t~sK~l~gG~~pig~v~~~--~~i----~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~-~~~~~- 552 (965)
+ + +|||.++-.+|++|+++++ +++ ++.+.. .....++.|.+++.++.++|+-... ++..+
T Consensus 343 ~~vi~~~S~SK~~~~~G~RiG~~i~~~~~~~~~~~~~~l~~-------~~~~~~~~~~~~q~a~~~aL~~~~~~~~~~~~ 415 (517)
T PRK13355 343 LFCVTFSGLSKSHMIAGYRIGWMILSGNKRIAKDYIEGLNM-------LANMRLCSNVPAQSIVQTALGGHQSVKDYLVP 415 (517)
T ss_pred CeEEEEecchhhccCcccceEEEEeeCchhhHHHHHHHHHH-------HhcCcCCcChHHHHHHHHHhcCCccHHHHHHH
Confidence 3 2 4799754322899999853 443 333321 1122345678888888888842110 11222
Q ss_pred --HHHHHHHHHHHHHHcccCCCceeeeeceeEEEEE-EEeecCccchhhHHHHHHHHHHHcCcEEeec-------CCEEE
Q psy8199 553 --RISQDMKKITKALTSLITHPKIINFRQKGMIWAF-DVIIEDPEQIETFSKKFFVAALKNELLLRPI-------GNTVY 622 (965)
Q Consensus 553 --~~~~~~~~l~~~L~~l~~~~~i~~v~g~G~~~~i-~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-------~~~lR 622 (965)
+..++.+++.+.|++ .+++....+.|.|+.+ .+. ............+.+.|.++||.+.|+ .+++|
T Consensus 416 ~~~~~~~r~~l~~~L~~---~~g~~~~~p~g~fy~~~~l~-~~~~~~~~~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~R 491 (517)
T PRK13355 416 GGRVYEQRELVYNALNA---IPGISAVKPKAAFYIFPKID-VKKFNIHDDEQFALDLLHDKKVLIVQGTGFNWDKPDHFR 491 (517)
T ss_pred HHHHHHHHHHHHHHHhc---CCCcccCCCCeeeEEEeecC-cccCCCCCHHHHHHHHHHhCCEEEeCcchhCCCCcCEEE
Confidence 233344555555544 4667777888988776 342 100000011223345677899999874 26899
Q ss_pred EeCCcccCHHHHHHHHHhhhccc
Q psy8199 623 LMPPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 623 ~~p~~~~t~~~i~~~~~~l~~~~ 645 (965)
++ +..+++.+++.++++.+.+
T Consensus 492 is--~~~~~~~l~~a~~rl~~~~ 512 (517)
T PRK13355 492 VV--YLPRLEDLEDAMDRLADFF 512 (517)
T ss_pred EE--eCCCHHHHHHHHHHHHHHH
Confidence 99 6788899999998887654
|
|
| >PRK02731 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-19 Score=204.84 Aligned_cols=323 Identities=15% Similarity=0.144 Sum_probs=211.3
Q ss_pred CCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHH
Q psy8199 252 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVAL 331 (965)
Q Consensus 252 dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al 331 (965)
++++++|+.++. +++| .+|.+.+++.+.+.....+ +.....++.+.+++.++.+.+++++++|+++++..++
T Consensus 30 ~~~~~i~l~~~~--~~~~-~~~~~~~a~~~~~~~~~~y-----~~~~~~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~ 101 (367)
T PRK02731 30 GIADIIKLASNE--NPLG-PSPKAIEAIRAAADELHRY-----PDGSGFELKAALAEKFGVDPERIILGNGSDEILELLA 101 (367)
T ss_pred CCCceEEecCCC--CCCC-CCHHHHHHHHHHHHhhcCC-----CCCcHHHHHHHHHHHhCcCHHHEEEcCCHHHHHHHHH
Confidence 677899998873 4577 5788999999887654332 2222357888888888766789999999999988877
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHH
Q psy8199 332 KMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDL 411 (965)
Q Consensus 332 ~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l 411 (965)
.... .+++.|++.+++|.++.......+ ..+..+|..+ .. .|++++
T Consensus 102 ~~l~--------~~gd~vl~~~p~y~~~~~~~~~~g-------------~~~~~~~~~~--~~-----------~~~~~l 147 (367)
T PRK02731 102 RAYL--------GPGDEVIYSEHGFAVYPIAAQAVG-------------AKPVEVPAKD--YG-----------HDLDAM 147 (367)
T ss_pred HHhc--------CCCCEEEEecCCHHHHHHHHHHcC-------------CeEEEecccC--CC-----------CCHHHH
Confidence 6553 256789999999976643222211 1222333211 11 267888
Q ss_pred HHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccc-cccccccCCCccee---
Q psy8199 412 EILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK-FFACEHAEIWPDFL--- 487 (965)
Q Consensus 412 e~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~-~~~~~~~~~~pDiv--- 487 (965)
++.+.+ ++.+|++.. ++|++|.+.+ .+.+.++.+.|+ +|+++|+||+|..+...+. ..+....+..++++
T Consensus 148 ~~~~~~---~~~~v~l~~-p~nptG~~~~-~~~l~~l~~~~~-~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~ 221 (367)
T PRK02731 148 LAAVTP---RTRLVFIAN-PNNPTGTYLP-AEEVERFLAGVP-PDVLVVLDEAYAEYVRRKDYEDGLELVAKFPNVVVTR 221 (367)
T ss_pred HHHhCC---CCcEEEEeC-CCCCCCcCCC-HHHHHHHHHhCC-CCcEEEEECcHHHhccCcCcccHHHHHhhcCCEEEEe
Confidence 887752 344454444 5999998875 444555555443 5999999999987654332 22223333345666
Q ss_pred eeccccC-CCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHH
Q psy8199 488 CLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN-KDNILQRISQDMKKITKAL 565 (965)
Q Consensus 488 t~sK~l~-gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~-~~~~~~~~~~~~~~l~~~L 565 (965)
+|||.++ .| +++|++++++++++.+.. ...+++.+++++.++.+.|+... -+...+..+++.+++.+.|
T Consensus 222 S~SK~~g~~G-~RiG~l~~~~~~~~~l~~--------~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~L 292 (367)
T PRK02731 222 TFSKAYGLAG-LRVGYGIAPPEIIDALNR--------VRQPFNVNSLALAAAVAALDDDAFVEKSRALNAEGMAWLTEFL 292 (367)
T ss_pred eehHhhcCcc-cceeeeeCCHHHHHHHHH--------ccCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899886 45 899999999999988865 12346678889988888885211 0123344444555555555
Q ss_pred HcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecC-----CEEEEeCCcccCHHHHHHHHHh
Q psy8199 566 TSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG-----NTVYLMPPYILNKNEIQHMTSA 640 (965)
Q Consensus 566 ~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~-----~~lR~~p~~~~t~~~i~~~~~~ 640 (965)
++. ++...++.|.++++.+. +. ..+.++.+.|.++||.+++.. +++|+++ .+.++++.++++
T Consensus 293 ~~~----g~~~~~~~g~~~~i~~~--~~----~~~~~~~~~L~~~gI~v~~~~~~~~~~~iRis~---~~~~e~~~l~~a 359 (367)
T PRK02731 293 AEL----GLEYIPSVGNFILVDFD--DG----KDAAEAYQALLKRGVIVRPVAGYGLPNALRITI---GTEEENRRFLAA 359 (367)
T ss_pred HHC----CCccCCCCceEEEEECC--CC----CCHHHHHHHHHHCCEEEEeCCCCCCCCeEEEec---CCHHHHHHHHHH
Confidence 543 33334556888888763 11 114467788899999998752 6899994 477889998888
Q ss_pred hhcc
Q psy8199 641 IFQT 644 (965)
Q Consensus 641 l~~~ 644 (965)
+.+.
T Consensus 360 L~~~ 363 (367)
T PRK02731 360 LKEF 363 (367)
T ss_pred HHHH
Confidence 7654
|
|
| >PRK06207 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.3e-19 Score=201.22 Aligned_cols=340 Identities=10% Similarity=0.047 Sum_probs=215.7
Q ss_pred cccccccccchhccCCCCCHHHHHHHHHHHhhc--cccccCCCCcHHHHHHHHHHHhhcC--CCC-CeEEEcCChhHHHH
Q psy8199 254 KRYLDAISSWWVNLFGHSNSYINKALKNQLNKL--EHVMLSNLTHKPVIKLSEKLSSLTQ--YKL-GHCFYGSDGASAVE 328 (965)
Q Consensus 254 ~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~--~~~~~~~~~~~~~~~la~~l~~~~~--~~~-~~v~~~~sGseA~~ 328 (965)
+..+|+..|... +++ .+|.+.+++.+.+... ..|....+..+.+..+++.+.+..+ ... ++|++++|+++|+.
T Consensus 39 ~~~i~l~~g~~~-~~~-p~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~l~~~~g~~~~~~~~I~it~Ga~~al~ 116 (405)
T PRK06207 39 GRPVDFSHGDVD-AHE-PTPGAFELFSAGVERGGVQAYTEYRGDADIRELLAARLAAFTGAPVDAADELIITPGTQGALF 116 (405)
T ss_pred CCceecCCcCCC-CCC-CCHHHHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHH
Confidence 345566555332 232 5678888888877653 2244344566788889998888766 345 78999999999999
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHH
Q psy8199 329 VALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAI 408 (965)
Q Consensus 329 ~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 408 (965)
.+++.... +++.|++.+++|.++.......+. .+..++..... . +.-...|+
T Consensus 117 ~~~~~l~~--------~Gd~Vlv~~P~y~~~~~~~~~~g~-------------~v~~v~~~~~~--~-----~~~~~~d~ 168 (405)
T PRK06207 117 LAVAATVA--------RGDKVAIVQPDYFANRKLVEFFEG-------------EMVPVQLDYLS--A-----DKRAGLDL 168 (405)
T ss_pred HHHHHhcC--------CCCEEEEeCCCchhHHHHHHHcCC-------------EEEEEeccccC--c-----ccCCCcCH
Confidence 99887643 568899999999887433322221 22223321000 0 00000367
Q ss_pred HHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccc-cccccCCC-cce
Q psy8199 409 FDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFF-ACEHAEIW-PDF 486 (965)
Q Consensus 409 ~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~-~~~~~~~~-pDi 486 (965)
++|++++++. ..+.+++.| +|++|.+. +.+.+++|.++|++||+++|+||+|..|...|..+ ....+... +.+
T Consensus 169 ~~l~~~~~~~--~k~v~l~~P--~NPTG~~~-s~e~l~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~v 243 (405)
T PRK06207 169 DQLEEAFKAG--VRVFLFSNP--NNPAGVVY-SAEEIAQIAALARRYGATVIVDQLYSRLLYDGTSYTHLRALPIDPENV 243 (405)
T ss_pred HHHHHhhhhc--CeEEEECCC--CCCCCcCC-CHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCchhcCCCCcCcE
Confidence 8888887532 224455666 89999877 67779999999999999999999999875444321 12122222 233
Q ss_pred e---eeccccC-CCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh--cccHHHHHHHHHHH
Q psy8199 487 L---CLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN--KDNILQRISQDMKK 560 (965)
Q Consensus 487 v---t~sK~l~-gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~--~~~~~~~~~~~~~~ 560 (965)
+ +|||.++ .| +++|++++++++++.+.. .....+.+.+.++++++.++|+.-. -+...+..+++.+.
T Consensus 244 i~i~SfSK~~~lpG-lRiG~ii~~~~l~~~~~~------~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~ 316 (405)
T PRK06207 244 ITIMGPSKTESLSG-YRLGVAFGSPAIIDRMEK------LQAIVSLRAAGYSQAVLRTWFSEPDGWMKDRIARHQAIRDD 316 (405)
T ss_pred EEEecchhhccCcc-cceEEEEcCHHHHHHHHH------HHhHhccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence 3 5899887 45 899999999999888865 1122344556778888877775210 01223334444444
Q ss_pred HHHHHHcccCCCceeeeece-eEEEEEEEeecCccchhhHHHHHHHHHH-HcCcEEeec-------CCEEEEeCCcccCH
Q psy8199 561 ITKALTSLITHPKIINFRQK-GMIWAFDVIIEDPEQIETFSKKFFVAAL-KNELLLRPI-------GNTVYLMPPYILNK 631 (965)
Q Consensus 561 l~~~L~~l~~~~~i~~v~g~-G~~~~i~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~-------~~~lR~~p~~~~t~ 631 (965)
+.+.|+. .+++....+. |+++++.+. ... .....+.+.|. ++||.+.|+ .+++|++ +..+.
T Consensus 317 l~~~L~~---~~~~~~~~p~gg~fl~~~l~-~~~----~~~~~~~~~l~~~~gV~v~pG~~F~~~~~~~~Ris--~~~~~ 386 (405)
T PRK06207 317 LLRVLRG---VEGVFVRAPQAGSYLFPRLP-RLA----VSLHDFVKILRLQAGVIVTPGTEFSPHTADSIRLN--FSQDH 386 (405)
T ss_pred HHHHHhc---CCCceecCCCeeEEEEEeCc-ccC----CCHHHHHHHHHHhcCEEEeCchHhCCCCCCeEEEE--ecCCH
Confidence 5555543 3445544454 567766664 110 01345777776 689999874 2689999 55678
Q ss_pred HHHHHHHHhhhccc
Q psy8199 632 NEIQHMTSAIFQTF 645 (965)
Q Consensus 632 ~~i~~~~~~l~~~~ 645 (965)
+++++.++++.+.+
T Consensus 387 ~~l~~al~rl~~~l 400 (405)
T PRK06207 387 AAAVAAAERIAQLI 400 (405)
T ss_pred HHHHHHHHHHHHHH
Confidence 88999888887644
|
|
| >TIGR01141 hisC histidinol-phosphate aminotransferase | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-19 Score=203.52 Aligned_cols=317 Identities=14% Similarity=0.188 Sum_probs=207.8
Q ss_pred cccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHH
Q psy8199 254 KRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKM 333 (965)
Q Consensus 254 ~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~ 333 (965)
.+.|||.+|. ++++ .+|++++|+.+++.....+ ......++.+.++++++.+.+++++++|+++++..+++.
T Consensus 19 ~~~i~l~~~~--~~~~-~~~~~~~a~~~~~~~~~~y-----~~~~~~~lr~~ia~~~~~~~~~i~~~~G~~~~l~~~~~~ 90 (346)
T TIGR01141 19 KEVIKLNSNE--NPFG-PPPKAKEALRAEADKLHRY-----PDPDPAELKQALADYYGVDPEQILLGNGSDEIIELLIRA 90 (346)
T ss_pred CceEEccCCC--CCCC-CCHHHHHHHHHhHHHhhcC-----CCCCHHHHHHHHHHHhCcChHHEEEcCCHHHHHHHHHHH
Confidence 4799998773 3566 4789999999887543222 222236777888888876678999999999999888776
Q ss_pred HHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHH
Q psy8199 334 SFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEI 413 (965)
Q Consensus 334 a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~ 413 (965)
... ++++|++.+++|..+....... ...+..+|.... +. .|++++++
T Consensus 91 l~~--------~gd~v~~~~p~y~~~~~~~~~~-------------g~~~~~~~~~~~-~~-----------~d~~~l~~ 137 (346)
T TIGR01141 91 FLE--------PGDAVLVPPPTYSMYEISAKIH-------------GAEVVKVPLDED-GQ-----------LDLEDILV 137 (346)
T ss_pred hcC--------CCCEEEEcCCCHHHHHHHHHHc-------------CCeEEEeccCCC-CC-----------CCHHHHHH
Confidence 532 5688999999885442211111 112333333211 11 36788877
Q ss_pred HHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCccee---eec
Q psy8199 414 LLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL---CLS 490 (965)
Q Consensus 414 ~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDiv---t~s 490 (965)
++. +++++|+++. ++|++|.+.+ .+.+.++.+.|+ +|+++|+||+|.++...+... ......++++ ++|
T Consensus 138 ~~~---~~~~~v~l~~-p~NptG~~~~-~~~~~~l~~~~~-~~~~ii~D~~y~~~~~~~~~~--~~~~~~~~~i~~~S~s 209 (346)
T TIGR01141 138 AID---DKPKLVFLCS-PNNPTGNLLS-RSDIEAVLERTP-EDALVVVDEAYGEFSGEPSTL--PLLAEYPNLIVLRTLS 209 (346)
T ss_pred hcC---CCCCEEEEeC-CCCCCCCCCC-HHHHHHHHHhCC-CCcEEEEECchhhhcCCccHH--HHHhhCCCEEEEehhh
Confidence 653 3456666665 5899998875 443444444444 499999999998765322211 1112234544 689
Q ss_pred cccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHHHccc
Q psy8199 491 KGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN-KDNILQRISQDMKKITKALTSLI 569 (965)
Q Consensus 491 K~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~-~~~~~~~~~~~~~~l~~~L~~l~ 569 (965)
|.++.+++++|++++++++++.+.. ...+++.+++++.++.+.++... -....++++++.+++.+.|+++
T Consensus 210 K~~g~~G~r~G~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~- 280 (346)
T TIGR01141 210 KAFGLAGLRIGYAIANAEIIDALNK--------VRAPFNLSRLAQAAAIAALRDDDFIEKTVEEINAERERLYDGLKKL- 280 (346)
T ss_pred HhhhchhhhceeeecCHHHHHHHHh--------ccCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 9985433899999999999888765 12356678999998888875432 1234555666666666666543
Q ss_pred CCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec------CCEEEEeCCcccCHHHHHHHHHhh
Q psy8199 570 THPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI------GNTVYLMPPYILNKNEIQHMTSAI 641 (965)
Q Consensus 570 ~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~------~~~lR~~p~~~~t~~~i~~~~~~l 641 (965)
+++....+.|.++.+++. + .++++.+.|.++||.+.++ .+++|++++ ++++++++++.+
T Consensus 281 --~g~~~~~~~g~~~~~~~~--~------~~~~~~~~L~~~gI~v~~g~~f~~~~~~iRls~~---~~~~i~~~~~~l 345 (346)
T TIGR01141 281 --PGLEVYPSDANFVLIRFP--R------DADALFEALLEKGIIVRDLNSYPGLPNCLRITVG---TREENDRFLAAL 345 (346)
T ss_pred --CCCEECCCcCCEEEEecC--C------CHHHHHHHHHHCCeEEEeCCCcCCCCCeEEEecC---CHHHHHHHHHHh
Confidence 455444456777777764 1 1456788899999999874 378999943 788999888765
|
Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme. |
| >TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.4e-20 Score=213.45 Aligned_cols=180 Identities=12% Similarity=0.167 Sum_probs=153.6
Q ss_pred eEeeccCCCCCCCCCCCCCCcCCCCcccccCCCHHHHHHHHHHHHH-CCCCEEEEeeccCCCCcccHHHHHHHHHHHHhc
Q psy8199 684 LLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKS-DGATRFCMGAAWRELKDRDLDNIENMICEVKKI 762 (965)
Q Consensus 684 ~i~~~s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~-~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~ 762 (965)
.++. |+|||++|.||+.+..+ .+++.++++.|+++++.+.+ .|++.|.+.+.... .+.+++.++++.+.+.
T Consensus 196 ~i~t-SRGCp~~C~FC~~~~~~----~~~R~rs~e~Vv~Ei~~l~~~~gv~~~~~~Dd~f~---~~~~~~~~l~~~l~~~ 267 (497)
T TIGR02026 196 VPNF-ARGCPFTCNFCSQWKFW----RRYRHRDPKKFVDEIEWLVRTHGVGFFILADEEPT---INRKKFQEFCEEIIAR 267 (497)
T ss_pred eeec-cCCCCCCCCCCCCCCCC----ceeecCCHHHHHHHHHHHHHHcCCCEEEEEecccc---cCHHHHHHHHHHHHhc
Confidence 3555 99999999999977542 35777899999999998865 69999999777543 3356777888877754
Q ss_pred C---cEeEE--ecCCC--CHHHHHHHHHhCCCeEeccCCC-CHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEec
Q psy8199 763 G---LETCL--TLGML--NENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL 834 (965)
Q Consensus 763 ~---~~i~~--~~~~~--~~e~l~~Lk~aG~~~i~i~~es-~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl 834 (965)
+ +.+.+ +...+ +++.++.|+++|+.++.+|+|| +++.++.+++.++.++..++++.++++||.+..++|+|+
T Consensus 268 ~~l~i~w~~~~r~~~i~~d~ell~~l~~aG~~~v~iGiES~~~~~L~~~~K~~t~~~~~~ai~~l~~~Gi~~~~~~I~G~ 347 (497)
T TIGR02026 268 NPISVTWGINTRVTDIVRDADILHLYRRAGLVHISLGTEAAAQATLDHFRKGTTTSTNKEAIRLLRQHNILSEAQFITGF 347 (497)
T ss_pred CCCCeEEEEecccccccCCHHHHHHHHHhCCcEEEEccccCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCcEEEEEEEEC
Confidence 3 33333 33333 8899999999999999999999 999999999999999999999999999999999999999
Q ss_pred -CCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCC
Q psy8199 835 -SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYG 873 (965)
Q Consensus 835 -~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~ 873 (965)
+||.+++.++++++.+++ ++.+.++.++|.||||+++
T Consensus 348 P~et~e~~~~t~~~~~~l~--~~~~~~~~~tP~PGT~l~~ 385 (497)
T TIGR02026 348 ENETDETFEETYRQLLDWD--PDQANWLMYTPWPFTSLFG 385 (497)
T ss_pred CCCCHHHHHHHHHHHHHcC--CCceEEEEecCCCCcHHHH
Confidence 799999999999999999 9999999999999999864
|
This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase. |
| >PRK07681 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.4e-19 Score=199.41 Aligned_cols=333 Identities=11% Similarity=0.061 Sum_probs=214.4
Q ss_pred CCcccccccccchhccCCCCCHHHHHHHHHHHhhcccccc-CCCCcHHHHHHHHHHHhhcC--CCC-CeEEEcCChhHHH
Q psy8199 252 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVML-SNLTHKPVIKLSEKLSSLTQ--YKL-GHCFYGSDGASAV 327 (965)
Q Consensus 252 dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~-~~~~~~~~~~la~~l~~~~~--~~~-~~v~~~~sGseA~ 327 (965)
.|..++|+..|.. .++ .++.+.+++.+.+.....+.. ..+..+.+..+++.+.+..+ .+. ++|++|+|+++|+
T Consensus 30 ~~~~~i~l~~g~p--~~~-~~~~~~~~~~~~~~~~~~~~y~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~al 106 (399)
T PRK07681 30 AGHKMIDLSIGNP--DMP-PADFVREEMVHTANQKESYGYTLSGIQEFHEAVTEYYNNTHNVILNADKEVLLLMGSQDGL 106 (399)
T ss_pred cCCCeEEeCCCCC--CCC-CCHHHHHHHHHHHhccccCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCeEEECCCcHHHH
Confidence 3668899887743 344 477888898887754322221 23455667777777776543 355 6899999999999
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHH
Q psy8199 328 EVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCA 407 (965)
Q Consensus 328 ~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 407 (965)
..++++..+ +++.|++.+++|.++...+...+. .+..+|........ .|
T Consensus 107 ~~~~~~~~~--------~Gd~Vlv~~P~y~~~~~~~~~~G~-------------~~~~v~~~~~~~~~----------~d 155 (399)
T PRK07681 107 VHLPMVYAN--------PGDIILVPDPGYTAYETGIQMAGA-------------TSYYMPLKKENDFL----------PD 155 (399)
T ss_pred HHHHHHhCC--------CCCEEEECCCCccchHHHHHhcCC-------------EEEEEecCCCCCCc----------CC
Confidence 998876643 568899999999887443333222 23333332111100 25
Q ss_pred HHHHHHHHHhCCCcEEEEEEc-cccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccccc-cc-ccccCCCc
Q psy8199 408 IFDLEILLKKNHNKIAAIIIE-PLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKF-FA-CEHAEIWP 484 (965)
Q Consensus 408 ~~~le~~l~~~~~~~aaii~e-p~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~-~~-~~~~~~~p 484 (965)
++++++.+. +++.+|++. | +|++|.+. +.+.+++|.++|++||+++|.||+|..|-..+.. .. ....+...
T Consensus 156 ~~~l~~~~~---~~~k~v~l~~P--~NPTG~~~-s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~ 229 (399)
T PRK07681 156 LELIPEEIA---DKAKMMILNFP--GNPVPAMA-HEDFFKEVIAFAKKHNIIVVHDFAYAEFYFDGNKPISFLSVPGAKE 229 (399)
T ss_pred HHHHHHhcc---ccceEEEEeCC--CCCcCcCC-CHHHHHHHHHHHHHcCeEEEEeccchhheeCCCCCCChhhCCCCcc
Confidence 677777664 234445544 6 89999876 6777999999999999999999999877433321 11 11111111
Q ss_pred c---eeeeccccC-CCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc--ccHHHHHHHHH
Q psy8199 485 D---FLCLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK--DNILQRISQDM 558 (965)
Q Consensus 485 D---ivt~sK~l~-gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~--~~~~~~~~~~~ 558 (965)
. +-+|||.++ .| +++|++++++++++.+.. .....+++.+.+++.++.++|+.-.+ +...+.++++.
T Consensus 230 ~~i~~~S~SK~~~~~G-lRiG~~i~~~~l~~~~~~------~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~ 302 (399)
T PRK07681 230 VGVEINSLSKSYSLAG-SRIGYMIGNEEIVRALTQ------FKSNTDYGVFLPIQKAACAALRNGAAFCEKNRGIYQERR 302 (399)
T ss_pred cEEEEeecccccCCcc-ceeEEEecCHHHHHHHHH------HHhhcccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 2 237899886 45 899999999999988865 12224566778888888888853110 12233445555
Q ss_pred HHHHHHHHcccCCCceeeeece-eEEEEEEEeecCccchhhHHHHHHHHHHH-cCcEEeec-------CCEEEEeCCccc
Q psy8199 559 KKITKALTSLITHPKIINFRQK-GMIWAFDVIIEDPEQIETFSKKFFVAALK-NELLLRPI-------GNTVYLMPPYIL 629 (965)
Q Consensus 559 ~~l~~~L~~l~~~~~i~~v~g~-G~~~~i~~~~~~~~~~~~~~~~~~~~l~~-~Gi~~~~~-------~~~lR~~p~~~~ 629 (965)
+.+.+.|++. ++....+. |.++.+.+. +. ....++.+.+++ +||.+.|+ .+++|++ +..
T Consensus 303 ~~l~~~L~~~----g~~~~~p~~g~f~~~~l~--~~----~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRis--~~~ 370 (399)
T PRK07681 303 DTLVDGFRTF----GWNVDKPAGSMFVWAEIP--KG----WTSLSFAYALMDRANVVVTPGHAFGPHGEGFVRIA--LVQ 370 (399)
T ss_pred HHHHHHHHHC----CCcccCCCeeeEEEEECC--CC----CCHHHHHHHHHHhCCEEEeCChhhCcCCCCeEEEE--ecC
Confidence 5566666543 34333343 566666553 21 113457677766 89999873 2589999 556
Q ss_pred CHHHHHHHHHhhhc
Q psy8199 630 NKNEIQHMTSAIFQ 643 (965)
Q Consensus 630 t~~~i~~~~~~l~~ 643 (965)
++++++++++++.+
T Consensus 371 ~~~~~~~~l~~l~~ 384 (399)
T PRK07681 371 DEEVLQQAVENIRN 384 (399)
T ss_pred CHHHHHHHHHHHHH
Confidence 78999999999875
|
|
| >PRK02610 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.1e-19 Score=199.63 Aligned_cols=328 Identities=10% Similarity=0.058 Sum_probs=204.7
Q ss_pred cccccccccchhccCCCCCHHHHHHHHHHHhhc---cccccCCCCcHHHHHHHHHHHhhc----CCCCCeEEEcCChhHH
Q psy8199 254 KRYLDAISSWWVNLFGHSNSYINKALKNQLNKL---EHVMLSNLTHKPVIKLSEKLSSLT----QYKLGHCFYGSDGASA 326 (965)
Q Consensus 254 ~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~---~~~~~~~~~~~~~~~la~~l~~~~----~~~~~~v~~~~sGseA 326 (965)
..++|+.+|. .+++ .+|.+.+++.+.++.. .+|. ..+..+.+..+++.+.+.. ..+.++|++|+|+++|
T Consensus 28 ~~~~~l~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~Y~-~~G~~~Lr~aia~~~~~~~~~~~~v~~~~I~it~Ga~~a 103 (374)
T PRK02610 28 IQLDRLDTNE--FPYD-LPPDLKQKLAWLYQQGIESNRYP-DGGHEALKQAIAEYVNESAAGSSQITPANISVGNGSDEL 103 (374)
T ss_pred cceeEecCCC--CCCC-CCHHHHHHHHHHHhhcccccCCC-CCchHHHHHHHHHHhCccccccCCCCHHHEEEcCChHHH
Confidence 4588887763 3444 5788999999876652 2232 1233344455555554432 1456789999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHH
Q psy8199 327 VEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARC 406 (965)
Q Consensus 327 ~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (965)
+..++..... ++.++|++.+++|.++...+...+. .+..++....... .
T Consensus 104 l~~~~~~~~~-------~g~~~Vlv~~P~y~~~~~~~~~~g~-------------~~~~~~~~~~~~~-----------~ 152 (374)
T PRK02610 104 IRSLLIATCL-------GGEGSILVAEPTFSMYGILAQTLGI-------------PVVRVGRDPETFE-----------I 152 (374)
T ss_pred HHHHHHHHcC-------CCCCeEEEcCCChHHHHHHHHHcCC-------------EEEEecCCcccCC-----------C
Confidence 9877765432 2334799999999887443333221 2233332211111 2
Q ss_pred HHHHHHHHHHhC-CCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcc
Q psy8199 407 AIFDLEILLKKN-HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPD 485 (965)
Q Consensus 407 d~~~le~~l~~~-~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pD 485 (965)
|+++|++++.+. ..++.+|++.+ ++|++|.+. +.+.+++|.++| +++++|.||+|..|..... .....-.++
T Consensus 153 d~~~l~~~~~~~~~~~~k~i~l~~-P~NPTG~~~-s~~~l~~l~~~~--~~~~iI~De~Y~~~~~~~~---~~~~~~~~~ 225 (374)
T PRK02610 153 DLAAAQSAIEQTQNPPVRVVFVVH-PNSPTGNPL-TAAELEWLRSLP--EDILVVIDEAYFEFSQTTL---VGELAQHPN 225 (374)
T ss_pred CHHHHHHHHHhhcCCCceEEEEeC-CCCCCCCCC-CHHHHHHHHhcc--CCcEEEEeccccccCccch---HHHHhcCCC
Confidence 678888887632 13456665555 599999887 566688888877 4999999999987732111 111111244
Q ss_pred ee---eeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHH---HH
Q psy8199 486 FL---CLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQD---MK 559 (965)
Q Consensus 486 iv---t~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~---~~ 559 (965)
++ +|||.++..++++|++++++++++.+..- ...++.+.+++.++.++|+.. +.+.+++++. .+
T Consensus 226 ~ivi~SfSK~~g~~GlRiG~~v~~~~l~~~l~~~--------~~~~~~~~~~q~a~~~~l~~~--~~~~~~~~~~~~~r~ 295 (374)
T PRK02610 226 WVILRTFSKAFRLAAHRVGYAIGHPELIAVLEKV--------RLPYNLPSFSQLAAQLALEHR--QELLAAIPEILQERD 295 (374)
T ss_pred EEEEEecchhccCcccceeeeecCHHHHHHHHHh--------cCCCCCCHHHHHHHHHHhcCH--HHHHHHHHHHHHHHH
Confidence 44 68998853228999999999999888651 123556888888888887532 2233333332 33
Q ss_pred HHHHHHHcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecCCEEEEeCCcccCHHHHHHHHH
Q psy8199 560 KITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTS 639 (965)
Q Consensus 560 ~l~~~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~lR~~p~~~~t~~~i~~~~~ 639 (965)
.+.+.|+. .+++...+..|.++++.+. +. .....+.+.|.++||.+++..+++|++ +. +.++++++++
T Consensus 296 ~l~~~L~~---~~~~~~~p~~g~f~~~~l~--~~----~~~~~~~~~l~~~gi~v~~~~~~lRls--~~-~~~~~~~~l~ 363 (374)
T PRK02610 296 RLYQALQE---LPQLRVWPSAANFLYLRLS--QD----AALAALHQALKAQGTLVRHTGGGLRIT--IG-TPEENQRTLE 363 (374)
T ss_pred HHHHHHHh---CCCcEeCCCcceEEEEeCC--CC----CCHHHHHHHHHHCCEEEEeCCCeEEEe--CC-CHHHHHHHHH
Confidence 34444433 3444434556777666654 11 113467788899999999877899999 33 4567888888
Q ss_pred hhhccc
Q psy8199 640 AIFQTF 645 (965)
Q Consensus 640 ~l~~~~ 645 (965)
++.+.+
T Consensus 364 ~l~~~l 369 (374)
T PRK02610 364 RLQAAL 369 (374)
T ss_pred HHHHHH
Confidence 876544
|
|
| >PRK00950 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.2e-19 Score=200.05 Aligned_cols=317 Identities=14% Similarity=0.143 Sum_probs=203.9
Q ss_pred cCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEE-cCChhHHHHH
Q psy8199 251 FSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFY-GSDGASAVEV 329 (965)
Q Consensus 251 ~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~-~~sGseA~~~ 329 (965)
.+++.++|+.++. +++| .+|.+.+++.+.+..... ++.....++.+.++++++...+++++ ++|.++++..
T Consensus 31 ~~~~~~i~l~~~~--~~~~-~~~~~~~~~~~~~~~~~~-----y~~~~~~~lr~~ia~~~~~~~~~i~~~~~Ga~~~i~~ 102 (361)
T PRK00950 31 IDPESIIKLGSNE--NPLG-PSPKAVEAIEKELSKIHR-----YPEPDAPELREALSKYTGVPVENIIVGGDGMDEVIDT 102 (361)
T ss_pred CCccceEEccCCC--CCCC-CCHHHHHHHHHHHHhhcC-----CCCCCHHHHHHHHHHHhCCCHHHEEEeCCCHHHHHHH
Confidence 4567899998763 4567 578999999887765322 23333477888888888766788988 6666788888
Q ss_pred HHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHH
Q psy8199 330 ALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIF 409 (965)
Q Consensus 330 Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 409 (965)
+++... .+++.|++.+++|..+.......+ ..+..+|.+... . .|++
T Consensus 103 ~~~~~~--------~~gd~vlv~~p~y~~~~~~~~~~g-------------~~~~~~~~~~~~-~-----------~~~~ 149 (361)
T PRK00950 103 LMRTFI--------DPGDEVIIPTPTFSYYEISAKAHG-------------AKPVYAKREEDF-S-----------LDVD 149 (361)
T ss_pred HHHHhc--------CCCCEEEEcCCChHHHHHHHHHcC-------------CEEEEeecCCCC-C-----------cCHH
Confidence 877653 245789999998876532222111 122333322111 1 3678
Q ss_pred HHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCccee--
Q psy8199 410 DLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL-- 487 (965)
Q Consensus 410 ~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDiv-- 487 (965)
++++.+.. ...+.+++.| +|++|.+.+ .+++.++|+++|+++|+||+|.+|. .+..... ..-.+.++
T Consensus 150 ~l~~~~~~--~~~~v~~~~p--~nptG~~~~----~~~l~~l~~~~~~~li~De~y~~~~-~~~~~~~--~~~~~~vi~~ 218 (361)
T PRK00950 150 SVLNAITE--KTKVIFLCTP--NNPTGNLIP----EEDIRKILESTDALVFVDEAYVEFA-EYDYTPL--ALEYDNLIIG 218 (361)
T ss_pred HHHHHhcc--CCCEEEEeCC--CCCCCCCcC----HHHHHHHHHHCCcEEEEECchhhhC-ccchHHH--HHhcCCEEEE
Confidence 88877742 2223444455 899999887 6678889999999999999998774 1111111 11112232
Q ss_pred -eeccccC-CCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Q psy8199 488 -CLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKAL 565 (965)
Q Consensus 488 -t~sK~l~-gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L 565 (965)
+|||.++ .| +++|++++++++++.+.. ...+++.++++++++.++|+ +.++.++.++..+..++.+
T Consensus 219 ~S~SK~~g~~G-lRiG~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~a~~~l~---~~~~~~~~~~~~~~~r~~l 286 (361)
T PRK00950 219 RTFSKVFGLAG-LRIGYGFVPEWLIDYYMR--------AKTPFSLTRLSQAAAIAALS---DKEYIEKSIEHGIKSREYL 286 (361)
T ss_pred EeehHhhcCch-hhcchhcCCHHHHHHHHH--------hcCCCCCCHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHH
Confidence 7899997 45 899999999999887765 22345577888888888874 3334444444444444444
Q ss_pred HcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec-------CCEEEEeCCcccCHHHHHHHH
Q psy8199 566 TSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-------GNTVYLMPPYILNKNEIQHMT 638 (965)
Q Consensus 566 ~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-------~~~lR~~p~~~~t~~~i~~~~ 638 (965)
.+..+ +...+..|.++.+.+. . ....++.+.|.++||.++++ .+++|++. .+.+++++++
T Consensus 287 ~~~l~---~~~~~~~~~~i~~~~~-~------~~~~~~~~~l~~~gv~v~~~~~f~~~~~~~lRis~---~~~~~~~~l~ 353 (361)
T PRK00950 287 YNELP---FKVYPSEANFVLVDVT-P------MTAKEFCEELLKRGVIVRDCTSFRGLGDYYIRVSI---GTFEENERFL 353 (361)
T ss_pred HhhcC---eeECCCcceEEEEECC-C------CCHHHHHHHHHHCCEEEeeCCccCCCCCCeEEEEC---CCHHHHHHHH
Confidence 32211 2223445666666653 1 11446788888999999863 25899994 3778899999
Q ss_pred Hhhhcc
Q psy8199 639 SAIFQT 644 (965)
Q Consensus 639 ~~l~~~ 644 (965)
+++.+.
T Consensus 354 ~~L~~i 359 (361)
T PRK00950 354 EILKEI 359 (361)
T ss_pred HHHHHH
Confidence 887653
|
|
| >PRK09147 succinyldiaminopimelate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.5e-18 Score=197.75 Aligned_cols=334 Identities=12% Similarity=0.051 Sum_probs=212.9
Q ss_pred CCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcC---CCCC-eEEEcCChhHHH
Q psy8199 252 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQ---YKLG-HCFYGSDGASAV 327 (965)
Q Consensus 252 dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~---~~~~-~v~~~~sGseA~ 327 (965)
.|+.++|+..|.. .++ .++.+.+++.+.+.....|....+..+.+..+++.+.+.++ .+.+ +|++|+|+++|+
T Consensus 27 ~~~~~i~l~~~~p--~~~-~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al 103 (396)
T PRK09147 27 ADLPPISLSIGEP--KHP-TPAFIKDALAANLDGLASYPTTAGLPALREAIAAWLERRYGLPALDPATQVLPVNGSREAL 103 (396)
T ss_pred cCCCeEecCCCCC--CCC-CCHHHHHHHHHHhhhhcCCCCCCCCHHHHHHHHHHHHHHhCCCcCCccceEEECCChHHHH
Confidence 4889999988754 344 36888999887766544454444556777888888877655 3444 899999999999
Q ss_pred HHHHHHHHHHHHhcCCCC---ceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHH
Q psy8199 328 EVALKMSFHYWYNKGFLN---KKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIA 404 (965)
Q Consensus 328 ~~Al~~a~~~~~~~g~~~---~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (965)
..+++.... + ++.|++.+++|.++.......+ ..+..+|.....+..
T Consensus 104 ~~~~~~l~~--------~~~~gd~vlv~~P~y~~~~~~~~~~g-------------~~~~~vp~~~~~~~~--------- 153 (396)
T PRK09147 104 FAFAQTVID--------RDGPGPLVVCPNPFYQIYEGAALLAG-------------AEPYFLNCDPANNFA--------- 153 (396)
T ss_pred HHHHHHHcC--------CCCCCCEEEEcCCCccchHHHHHhcC-------------CEEEEeccCccccCc---------
Confidence 999887643 3 5789999999988743322222 123444432111100
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccc--ccc-cc---
Q psy8199 405 RCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK--FFA-CE--- 478 (965)
Q Consensus 405 ~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~--~~~-~~--- 478 (965)
.|++++++.+.+ ...+.++++| +|++|.+. +++.+++|.++|++|++++|.||+|..|-..+. ... ..
T Consensus 154 -~d~~~l~~~~~~--~~k~i~l~nP--~NPTG~~~-s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~ 227 (396)
T PRK09147 154 -PDFDAVPAEVWA--RTQLLFVCSP--GNPTGAVL-PLDDWKKLFALSDRYGFVIASDECYSEIYFDEAAPPLGLLEAAA 227 (396)
T ss_pred -cCHHHHHHHHhh--ccEEEEEcCC--CCCcCccC-CHHHHHHHHHHHHHcCeEEEeeccccccccCCCCCCchhhhhcc
Confidence 367788776642 2234445555 99999876 788899999999999999999999987643331 111 11
Q ss_pred ccCC--Cccee---eeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh-cccHHH
Q psy8199 479 HAEI--WPDFL---CLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN-KDNILQ 552 (965)
Q Consensus 479 ~~~~--~pDiv---t~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~-~~~~~~ 552 (965)
..+. .+.++ +|||.++..++++|++++++++++.+.. .....+++.+++++.++.+++..-. -....+
T Consensus 228 ~~~~~~~~~vi~~~S~SK~~~~~GlRiG~~~~~~~l~~~~~~------~~~~~~~~~~~~~q~a~~~~~~~~~~~~~~~~ 301 (396)
T PRK09147 228 ELGRDDFKRLVVFHSLSKRSNVPGLRSGFVAGDAALLKKFLL------YRTYHGCAMPPAVQAASIAAWNDEAHVRENRA 301 (396)
T ss_pred ccCccccccEEEEeccccccCCccceeeeecCCHHHHHHHHH------HhhhcccCCCHHHHHHHHHHhcchhHHHHHHH
Confidence 1111 13344 6899754433899999999999887764 1122345677888888887773100 011233
Q ss_pred HHHHHHHHHHHHHHcccCCCceeee-eceeEEEEEEEeecCccchhhHHHHHHHHHH-HcCcEEeec-------------
Q psy8199 553 RISQDMKKITKALTSLITHPKIINF-RQKGMIWAFDVIIEDPEQIETFSKKFFVAAL-KNELLLRPI------------- 617 (965)
Q Consensus 553 ~~~~~~~~l~~~L~~l~~~~~i~~v-~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~------------- 617 (965)
.++++.+.+.+.|++. +... +..|+++++++. .+ ...+.+.++ ++||.+.|+
T Consensus 302 ~~~~~~~~~~~~L~~~-----~~~~~p~~g~f~~~~~~-~~-------~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~~ 368 (396)
T PRK09147 302 LYREKFDAVTPILAPV-----LDVQLPDAGFYLWAKVP-GD-------DTEFARRLYADYNVTVLPGSYLAREAHGVNPG 368 (396)
T ss_pred HHHHHHHHHHHHHHHh-----cCCCCCCeeEEEEEECC-CC-------HHHHHHHHHHhCCEEEeCCccccccccCCCCC
Confidence 4444445555555432 2222 344666666653 11 235666665 689998763
Q ss_pred CCEEEEeCCcccCHHHHHHHHHhhhccc
Q psy8199 618 GNTVYLMPPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 618 ~~~lR~~p~~~~t~~~i~~~~~~l~~~~ 645 (965)
.+++|++ +..++++++++++++.+.+
T Consensus 369 ~~~iRi~--~~~~~~~l~~~l~rl~~~~ 394 (396)
T PRK09147 369 AGRVRIA--LVAPLAECVEAAERIVDFC 394 (396)
T ss_pred CCeEEEE--ecCCHHHHHHHHHHHHHHh
Confidence 2579999 5567888998888886543
|
|
| >PLN00145 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.4e-18 Score=198.72 Aligned_cols=342 Identities=13% Similarity=0.056 Sum_probs=209.7
Q ss_pred CcccccccccchhccCC-C-CCHHHHHHHHHHHhhc--cccccCCCCcHHHHHHHHHHHhhcCC--CCCeEEEcCChhHH
Q psy8199 253 GKRYLDAISSWWVNLFG-H-SNSYINKALKNQLNKL--EHVMLSNLTHKPVIKLSEKLSSLTQY--KLGHCFYGSDGASA 326 (965)
Q Consensus 253 G~~ylD~~~~~~~~~lG-h-~~p~v~~av~~~~~~~--~~~~~~~~~~~~~~~la~~l~~~~~~--~~~~v~~~~sGseA 326 (965)
|+.+|++..|... .++ . .+|++.+++.++++.. ..|....+..+.+..+++.+.+..+. ..++|++|+|+++|
T Consensus 51 ~~~~i~l~~G~P~-~~~~~~~~~~~~~a~~~al~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~v~it~G~~~a 129 (430)
T PLN00145 51 PRPVLPLGHGDPS-AFPCFRTAPEAEDAVAAALRSGKYNSYSTCVGLLPARRAIAEYLSRDLPYELSTDDIYLTAGCAQA 129 (430)
T ss_pred CCCeeeCCCCCCC-CCCCCCCCHHHHHHHHHHHHcCcCCCCCCCccCHHHHHHHHHHHhhccCCCCChhhEEEeCCHHHH
Confidence 8899998877432 222 2 3688999999888653 22333345556667777777654432 45789999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCC-CCCCCCCCCChhHHHH
Q psy8199 327 VEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTP-DSRNINKGNSANEIAR 405 (965)
Q Consensus 327 ~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 405 (965)
+..+++.... ++++|++.+++|+.+...+...+. .+..++.+ .....
T Consensus 130 l~l~~~~l~~--------~Gd~Vlv~~P~y~~y~~~~~~~g~-------------~~~~~~~~~~~~~~----------- 177 (430)
T PLN00145 130 IEIIMSVLAQ--------PGANILLPRPGYPLYEARAVFSGL-------------EVRHFDLLPERGWE----------- 177 (430)
T ss_pred HHHHHHHhcC--------CCCEEEEcCCCCccHHHHHHHcCC-------------EEEEeeCCcccCCc-----------
Confidence 9999887632 567899999999887433322221 22333321 11111
Q ss_pred HHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccccc-ccccccCCCc
Q psy8199 406 CAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKF-FACEHAEIWP 484 (965)
Q Consensus 406 ~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~-~~~~~~~~~p 484 (965)
.|++++++++.+ ...+++++.| +|++|.+. +.+.+++|.++|++||+++|+||+|..|...+.. .....++-..
T Consensus 178 ~d~~~l~~~~~~--~~~~i~i~~P--~NPtG~v~-~~~~l~~i~~~a~~~~i~ii~De~Y~~~~~~~~~~~~~~~~~~~~ 252 (430)
T PLN00145 178 VDLEGVEALADE--NTVAMVIINP--NNPCGSVY-SYEHLAKIAETARKLGILVIADEVYDHLTFGSKPFVPMGVFGEVA 252 (430)
T ss_pred CCHHHHHHHhCc--CceEEEEeCC--CCCCCCCC-CHHHHHHHHHHHHHcCCEEEEeccchhhccCCCCccchhhhcccC
Confidence 367888887753 3456666666 89999766 7777999999999999999999999887543321 1111122222
Q ss_pred cee---eeccccCCCcccceeeee--cHHHHH------hhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc---ccH
Q psy8199 485 DFL---CLSKGITGGYLPLSLVMT--TDKIYN------SIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK---DNI 550 (965)
Q Consensus 485 Div---t~sK~l~gG~~pig~v~~--~~~i~~------~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~---~~~ 550 (965)
.++ +|||.++..+|++|++++ ++.+++ .+.. + ...+...+.+.++++.++|+.-.+ +..
T Consensus 253 ~vi~~~S~SK~~~~pG~RlG~iv~~~~~~~~~~~~~~~~~~~------~-~~~~~~~~~~~Q~a~~~~l~~~~~~~~~~~ 325 (430)
T PLN00145 253 PVLTLGSISKRWVVPGWRLGWIATCDPNGILKETKVVDSIRN------Y-LNISTDPATFVQGAIPQIIANTKEEFFTKT 325 (430)
T ss_pred cEEEEeccccccCCCCeeEEEEEEecchhhhhhhHHHHHHHH------H-hcccCCCCHHHHHHHHHHHhcCHHHHHHHH
Confidence 344 589984432299999987 344433 2222 1 112223467888888888863111 123
Q ss_pred HHHHHHHHHHHHHHHHcccCCCceee-eeceeEEEEEE-EeecCccchhhHHHHHHH-HHHHcCcEEeecC-----CEEE
Q psy8199 551 LQRISQDMKKITKALTSLITHPKIIN-FRQKGMIWAFD-VIIEDPEQIETFSKKFFV-AALKNELLLRPIG-----NTVY 622 (965)
Q Consensus 551 ~~~~~~~~~~l~~~L~~l~~~~~i~~-v~g~G~~~~i~-~~~~~~~~~~~~~~~~~~-~l~~~Gi~~~~~~-----~~lR 622 (965)
.+.++++.+.+.+.|++ ++++.. ..+.|.|+.+. +. .+..........+.. .+.++||++.|+. +++|
T Consensus 326 ~~~~~~~~~~~~~~L~~---~~g~~~~~~P~ga~y~~v~l~-~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~fg~~~~lR 401 (430)
T PLN00145 326 LGLLKETADICYEKIKE---IKCITCPHKPEGSMFVMVKLD-LSCLSGIKDDMDFCCKLAKEESVVVLPGSALGMKNWLR 401 (430)
T ss_pred HHHHHHHHHHHHHHHhc---CCCCCCCcCCCeeeEEEeccC-hhhcCCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEE
Confidence 34445555555555543 456553 35666665443 32 100000001234554 4457799998852 7999
Q ss_pred EeCCcccCHHHHHHHHHhhhccc
Q psy8199 623 LMPPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 623 ~~p~~~~t~~~i~~~~~~l~~~~ 645 (965)
|+ +..+.+.+++.++++.+.+
T Consensus 402 is--~~~~~~~l~~al~rl~~~~ 422 (430)
T PLN00145 402 IT--FAIDPPSLEDGLERLKSFC 422 (430)
T ss_pred EE--eCCCHHHHHHHHHHHHHHH
Confidence 99 5568888888888876544
|
|
| >PRK08960 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.4e-18 Score=197.33 Aligned_cols=332 Identities=14% Similarity=0.049 Sum_probs=212.9
Q ss_pred CcccccccccchhccCCCCCHHHHHHHHHHHhhc-cccccCCCCcHHHHHHHHHHHhhcC--CCCCeEEEcCChhHHHHH
Q psy8199 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKL-EHVMLSNLTHKPVIKLSEKLSSLTQ--YKLGHCFYGSDGASAVEV 329 (965)
Q Consensus 253 G~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~-~~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~~~sGseA~~~ 329 (965)
|..++++..|.. +++ .++.+.+++.+.+... ..+....+..+.+..+++.+.+..+ ...++|++|+|+++|+..
T Consensus 31 ~~~~i~l~~g~~--~~~-~~~~v~~a~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~ 107 (387)
T PRK08960 31 GHDVIHLEIGEP--DFT-TAEPIVAAGQAALAAGHTRYTAARGLPALREAIAGFYAQRYGVDVDPERILVTPGGSGALLL 107 (387)
T ss_pred CCCeEEeCCCCC--CCC-CCHHHHHHHHHHHhcCCCccCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEEccCcHHHHHH
Confidence 456788777644 233 3788999998887642 2232233455666777777765433 356799999999999999
Q ss_pred HHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHH
Q psy8199 330 ALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIF 409 (965)
Q Consensus 330 Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 409 (965)
++.+.. .+++.|++.+++|.++.......+ ..+..+|........ .|++
T Consensus 108 ~~~~~~--------~~gd~vlv~~p~y~~~~~~~~~~g-------------~~~~~v~~~~~~~~~----------~d~~ 156 (387)
T PRK08960 108 ASSLLV--------DPGKHWLLADPGYPCNRHFLRLVE-------------GAAQLVPVGPDSRYQ----------LTPA 156 (387)
T ss_pred HHHHhc--------CCCCEEEEcCCCCcchHHHHHhcC-------------CeEEEEecCcccCCC----------CCHH
Confidence 987663 256889999999988743322221 123344432211100 2577
Q ss_pred HHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCccee--
Q psy8199 410 DLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL-- 487 (965)
Q Consensus 410 ~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDiv-- 487 (965)
++++++.+ ....++++.| +|++|.+. +.+.+++|.++|++||+++|+||+|.+|-..+... ....+.++++
T Consensus 157 ~l~~~~~~--~~~~i~i~~p--~NPtG~~~-~~~~~~~l~~~~~~~~~~li~De~Y~~~~~~~~~~--~~~~~~~~vi~~ 229 (387)
T PRK08960 157 LVERHWNA--DTVGALVASP--ANPTGTLL-SRDELAALSQALRARGGHLVVDEIYHGLTYGVDAA--SVLEVDDDAFVL 229 (387)
T ss_pred HHHHHhCc--cceEEEEECC--CCCCCcCc-CHHHHHHHHHHHHHcCCEEEEEccccccccCCCCC--ChhhccCCEEEE
Confidence 88887753 3345566666 89999876 67789999999999999999999998774322211 1234456766
Q ss_pred -eeccccC-CCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhccc----HHHHHHHHHHHH
Q psy8199 488 -CLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDN----ILQRISQDMKKI 561 (965)
Q Consensus 488 -t~sK~l~-gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~----~~~~~~~~~~~l 561 (965)
+|||.++ .| +++|++++++++++.+.. +....+.+.+.+++.++.++|+- ..++ ..+.++++.+.+
T Consensus 230 ~S~SK~~g~~G-lRiG~~~~~~~~~~~~~~------~~~~~~~~~s~~~q~a~~~~l~~-~~~~~l~~~~~~~~~~~~~l 301 (387)
T PRK08960 230 NSFSKYFGMTG-WRLGWLVAPPAAVPELEK------LAQNLYISASTPAQHAALACFEP-ETLAILEARRAEFARRRDFL 301 (387)
T ss_pred eecccccCCcc-cEEEEEEcCHHHHHHHHH------HHhhhccCCCHHHHHHHHHHhhc-CcHHHHHHHHHHHHHHHHHH
Confidence 4899886 45 899999999999887754 22334556688898888888742 1112 233444455555
Q ss_pred HHHHHcccCCCcee-eeece-eEEEEEEEeecCccchhhHHHHHHHHHH-HcCcEEeec--------CCEEEEeCCcccC
Q psy8199 562 TKALTSLITHPKII-NFRQK-GMIWAFDVIIEDPEQIETFSKKFFVAAL-KNELLLRPI--------GNTVYLMPPYILN 630 (965)
Q Consensus 562 ~~~L~~l~~~~~i~-~v~g~-G~~~~i~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~--------~~~lR~~p~~~~t 630 (965)
.+.|++. ++. .+.+. |+++.+++. .... ....+++.+. ++||.+.|+ ++++|++.. .+
T Consensus 302 ~~~L~~~----~~~~~~~p~g~~f~~~~~~-~~~~----~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~iRi~~~--~~ 370 (387)
T PRK08960 302 LPALREL----GFGIAVEPQGAFYLYADIS-AFGG----DAFAFCRHFLETEHVAFTPGLDFGRHQAGQHVRFAYT--QS 370 (387)
T ss_pred HHHHHhc----CCcCCcCCCeeEEEEEecc-ccCC----CHHHHHHHHHHhCCEEEcCchHhCCCCCCCeEEEEec--CC
Confidence 5555543 222 12343 556666653 1000 1245666655 689999873 258999944 46
Q ss_pred HHHHHHHHHhhhcc
Q psy8199 631 KNEIQHMTSAIFQT 644 (965)
Q Consensus 631 ~~~i~~~~~~l~~~ 644 (965)
.+.+.++++++.+.
T Consensus 371 ~~~l~~al~~l~~~ 384 (387)
T PRK08960 371 LPRLQEAVERIARG 384 (387)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777776543
|
|
| >PRK14809 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.4e-19 Score=197.36 Aligned_cols=314 Identities=12% Similarity=0.132 Sum_probs=203.7
Q ss_pred CCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHH
Q psy8199 252 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVAL 331 (965)
Q Consensus 252 dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al 331 (965)
+|..++|+..| .+++| .+|.+.+++.+.++.... |+.....+|.+.+++.++.+.+++++|+|+++|+..++
T Consensus 28 ~~~~~i~l~~~--~~~~~-~~~~~~~~~~~~~~~~~~-----Y~~~~~~~lr~~ia~~~~~~~~~I~it~G~~~al~~~~ 99 (357)
T PRK14809 28 DPDDLVKLSSN--ENPHG-PSPAAVEAIREAAERVHS-----YPKASHADLTAALADRWDVSPEQVWLANGGDGALDYLA 99 (357)
T ss_pred CccceeEecCC--CCCCC-CCHHHHHHHHHHHhhhhc-----CCCCCHHHHHHHHHHHhCCCcceEEECCCHHHHHHHHH
Confidence 46678998776 34455 578899999887765322 23333557778888888778889999999999999998
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHH
Q psy8199 332 KMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDL 411 (965)
Q Consensus 332 ~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l 411 (965)
++..+ +++.|++.+++|..+.......+ ..+..+|.+...+.. .+++++
T Consensus 100 ~~~~~--------~gd~V~v~~P~y~~~~~~~~~~g-------------~~~~~~~l~~~~~~~----------~~~~~~ 148 (357)
T PRK14809 100 RAMLD--------PGDTVLVPDPGFAYYGMSARYHH-------------GEVREYPVSKADDFE----------QTADTV 148 (357)
T ss_pred HHhcC--------CCCEEEEeCCChHHHHHHHHHcC-------------CeEEEEecccCcCCC----------cCHHHH
Confidence 87643 56789999999865532211111 123333332111000 234555
Q ss_pred HHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCccee---e
Q psy8199 412 EILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL---C 488 (965)
Q Consensus 412 e~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDiv---t 488 (965)
++.+. .....++++ ++|++|.+. +.+.+++|.++|++ ++++|+||+|..|...+... ......++++ +
T Consensus 149 ~~~~~---~~k~i~l~~--p~NPTG~~~-s~~~~~~l~~~~~~-~~~iI~De~y~~~~~~~~~~--~~~~~~~~vi~~~S 219 (357)
T PRK14809 149 LDAYD---GERIVYLTS--PHNPTGSEI-PLDEVEALAERTDE-ETLVVVDEAYGEFAERPSAV--ALVEERDDVAVLRT 219 (357)
T ss_pred HHhhc---CCcEEEEeC--CCCCCCcCC-CHHHHHHHHHhCcc-CcEEEEechhhhccCCchhH--HHHhhCCCEEEEec
Confidence 54432 223444554 499999887 56667888888865 78999999999875433211 1111122333 7
Q ss_pred eccccC-CCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHH----HHHHHHHHHH
Q psy8199 489 LSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQR----ISQDMKKITK 563 (965)
Q Consensus 489 ~sK~l~-gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~----~~~~~~~l~~ 563 (965)
|||.++ .| +++|++++++++++.+.. ...+++.+++++.++.++|+ ++++.++ ++++.+.+.+
T Consensus 220 fSK~~~~~G-lRiG~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~a~~~l~---~~~~~~~~~~~~~~~r~~l~~ 287 (357)
T PRK14809 220 FSKAYGLAG-LRLGYAVVPEEWADAYAR--------VNTPFAASELACRAGLAALD---DDEHVERTVETARWAREYIRE 287 (357)
T ss_pred chhHhcCcc-hhheeeecCHHHHHHHHH--------hCCCCCCCHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHH
Confidence 899886 45 899999999999988865 12466778999998888884 2333333 3333344444
Q ss_pred HHHcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecC-----CEEEEeCCcccCHHHHHHHH
Q psy8199 564 ALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG-----NTVYLMPPYILNKNEIQHMT 638 (965)
Q Consensus 564 ~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~-----~~lR~~p~~~~t~~~i~~~~ 638 (965)
.|.. . ..++.|+++.+.+. + ..++.+.|.++||.+.|+. +++|++. .+.+++++++
T Consensus 288 ~L~~---~----~~~~~g~f~~~~~~--~-------~~~~~~~l~~~gv~v~~g~~f~~~~~iRls~---~~~~~~~~~l 348 (357)
T PRK14809 288 ELDA---P----TWESAGNFVLAEVG--D-------ASAVAEAAQERGVIVRDCTSFGLPECIRITC---GTREETERAV 348 (357)
T ss_pred HhcC---c----cCCCCCCEEEEECC--C-------HHHHHHHHHHCCEEEEECccCCCCCeEEEec---CCHHHHHHHH
Confidence 4422 1 22456788877653 2 3357778889999999853 6899993 3578999999
Q ss_pred Hhhhcc
Q psy8199 639 SAIFQT 644 (965)
Q Consensus 639 ~~l~~~ 644 (965)
+++...
T Consensus 349 ~~L~~~ 354 (357)
T PRK14809 349 EVLNEV 354 (357)
T ss_pred HHHHHH
Confidence 888654
|
|
| >PRK09148 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.6e-18 Score=197.44 Aligned_cols=346 Identities=12% Similarity=0.041 Sum_probs=218.7
Q ss_pred cCCcccccccccchhccCCCCCHHHHHHHHHHHhh--ccccccCCCCcHHHHHHHHHHHhhcC--CCCC-eEEEcCChhH
Q psy8199 251 FSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNK--LEHVMLSNLTHKPVIKLSEKLSSLTQ--YKLG-HCFYGSDGAS 325 (965)
Q Consensus 251 ~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~--~~~~~~~~~~~~~~~~la~~l~~~~~--~~~~-~v~~~~sGse 325 (965)
..|+.++|+..|. ..++. ++.+.+++.+.+.. ...|....+..+.+..+++.+.+..+ ...+ +|++|+|+++
T Consensus 27 ~~~~~~i~l~~~~--p~~~~-~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~ 103 (405)
T PRK09148 27 AAGADIIDLGMGN--PDLPT-PQHIVDKLCETAQDPRTHRYSASKGIPGLRRAQAAYYARRFGVKLNPDTQVVATLGSKE 103 (405)
T ss_pred hcCCCeEEcCCCC--CCCCC-CHHHHHHHHHHHcCcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHH
Confidence 3577889987763 23443 67888888877643 22233334455677778877776544 2455 7999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHH
Q psy8199 326 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIAR 405 (965)
Q Consensus 326 A~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (965)
|+..++..... +++.|++.+++|.++.......+. .+..+|.....
T Consensus 104 al~~~~~~l~~--------~gd~Vl~~~P~y~~~~~~~~~~g~-------------~v~~v~~~~~~------------- 149 (405)
T PRK09148 104 GFANMAQAITA--------PGDVILCPNPSYPIHAFGFIMAGG-------------VIRSVPAEPDE------------- 149 (405)
T ss_pred HHHHHHHHhcC--------CCCEEEEcCCCCcccHHHHHhcCC-------------EEEEEeCCCCC-------------
Confidence 99999887643 568899999999887433222211 22333321110
Q ss_pred HHHHHHHHHHHhCCCcEE-EEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccccccc-ccccCCC
Q psy8199 406 CAIFDLEILLKKNHNKIA-AIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFA-CEHAEIW 483 (965)
Q Consensus 406 ~d~~~le~~l~~~~~~~a-aii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~-~~~~~~~ 483 (965)
.+++++++++..+..++. .+++.| +|++|.+. +.+.+++|.++|++||+++|+||+|..|...+..+. .....-.
T Consensus 150 ~~~~~l~~~~~~~~~~~~~v~l~~P--~NPtG~~~-s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~s~~~~~~~ 226 (405)
T PRK09148 150 EFFPALERAVRHSIPKPIALIVNYP--SNPTAYVA-DLDFYKDVVAFAKKHDIIILSDLAYSEIYFDGNPPPSVLQVPGA 226 (405)
T ss_pred CCccCHHHHHhhccccceEEEEeCC--CCCCCcCC-CHHHHHHHHHHHHHcCeEEEEeccchhhhcCCCCCCChhhCCCc
Confidence 123445555543323444 455555 89999776 778899999999999999999999987643332211 1111111
Q ss_pred cc----eeeeccccC-CCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc--ccHHHHHHH
Q psy8199 484 PD----FLCLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK--DNILQRISQ 556 (965)
Q Consensus 484 pD----ivt~sK~l~-gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~--~~~~~~~~~ 556 (965)
++ +-+|||.++ -| +++|++++++++++.+.. .....+++.+++++.++.+.|+.-.+ +...+.+++
T Consensus 227 ~~~~i~~~SfSK~~~~pG-lR~G~~v~~~~~i~~l~~------~~~~~~~~~~~~~q~~~~~~L~~~~~~~~~~~~~~~~ 299 (405)
T PRK09148 227 KDVTVEFTSMSKTFSMAG-WRMGFAVGNERLIAALTR------VKSYLDYGAFTPIQVAATAALNGPQDCIAEMRELYKK 299 (405)
T ss_pred cCcEEEEeccccccCCcc-hheeeeeCCHHHHHHHHH------HHHHhccCCChHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 23 236899887 45 899999999999988865 22223456678888888888852111 123445556
Q ss_pred HHHHHHHHHHcccCCCceeeeec-eeEEEEEEEeecCccchhhHHHHHHHHHH-HcCcEEeec-------CCEEEEeCCc
Q psy8199 557 DMKKITKALTSLITHPKIINFRQ-KGMIWAFDVIIEDPEQIETFSKKFFVAAL-KNELLLRPI-------GNTVYLMPPY 627 (965)
Q Consensus 557 ~~~~l~~~L~~l~~~~~i~~v~g-~G~~~~i~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~-------~~~lR~~p~~ 627 (965)
+.+.+.+.|++. ++....+ .|+++++.+. .. .. .....++.+.+. ++||.+.|+ .+++|++.
T Consensus 300 ~r~~l~~~L~~~----~~~~~~p~~g~f~~~~l~-~~-~~-~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~Ri~~-- 370 (405)
T PRK09148 300 RRDVLVESFGRA----GWDIPPPAASMFAWAPIP-EA-FR-HLGSLEFSKLLVEKADVAVAPGVGFGEHGDGYVRIAL-- 370 (405)
T ss_pred HHHHHHHHHHHc----CCccCCCCeeEEEEEECC-Cc-cC-CCCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEe--
Confidence 666666666543 3333334 4556666653 11 00 001235666655 789999874 26899984
Q ss_pred ccCHHHHHHHHHhhhcccccHHHHH
Q psy8199 628 ILNKNEIQHMTSAIFQTFNELDEVI 652 (965)
Q Consensus 628 ~~t~~~i~~~~~~l~~~~~~~~e~l 652 (965)
..+.+.+.++++++.+.+...+|.+
T Consensus 371 ~~~~~~l~~al~~l~~~l~~~~~~~ 395 (405)
T PRK09148 371 VENEQRIRQAARNIKRFLSSADETL 395 (405)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678889999998887776666644
|
|
| >PRK12414 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.6e-18 Score=196.23 Aligned_cols=333 Identities=10% Similarity=0.069 Sum_probs=216.5
Q ss_pred CcccccccccchhccCCCCCHHHHHHHHHHHhhc-cccccCCCCcHHHHHHHHHHHhhcCCC--C-CeEEEcCChhHHHH
Q psy8199 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKL-EHVMLSNLTHKPVIKLSEKLSSLTQYK--L-GHCFYGSDGASAVE 328 (965)
Q Consensus 253 G~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~-~~~~~~~~~~~~~~~la~~l~~~~~~~--~-~~v~~~~sGseA~~ 328 (965)
+..++|+..|.. .++ .+|.+.+++.+.+... ..|....+..+....+++.+++..+.. . +++++++||++|+.
T Consensus 28 ~~~~i~l~~g~p--~~~-~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~it~g~~~al~ 104 (384)
T PRK12414 28 QHDALNLSQGAP--NFA-PDPALVEGVARAMRDGHNQYAPMAGIAALREALAEKTERLYGARYDPASEVTVIASASEGLY 104 (384)
T ss_pred hCCeEEcCCCCC--CCC-CCHHHHHHHHHHHHhCCCCcCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEECChHHHHH
Confidence 346788887754 344 4788999988776542 233334455677888888888877643 2 47999999999999
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHH
Q psy8199 329 VALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAI 408 (965)
Q Consensus 329 ~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 408 (965)
.+++.... ++++|++.+++|.++.......+. ....+|....... .|+
T Consensus 105 ~~~~~l~~--------~gd~Vlv~~p~y~~~~~~~~~~g~-------------~~~~v~~~~~~~~-----------~d~ 152 (384)
T PRK12414 105 AAISALVH--------PGDEVIYFEPSFDSYAPIVRLQGA-------------TPVAIKLSPEDFR-----------VNW 152 (384)
T ss_pred HHHHHhcC--------CCCEEEEeCCCccchHHHHHHcCC-------------EEEEEecCccccc-----------cCH
Confidence 99886642 568899999999776333222211 2223332110011 367
Q ss_pred HHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccc-cc-cccCCCcce
Q psy8199 409 FDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFF-AC-EHAEIWPDF 486 (965)
Q Consensus 409 ~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~-~~-~~~~~~pDi 486 (965)
++|++++. .++.+|++.. ++|++|.+. +++.+++|.++|++||+++|+||+|..|...+... .. .+.+....+
T Consensus 153 ~~l~~~l~---~~~~~v~i~~-p~NPTG~~~-s~~~~~~i~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~ 227 (384)
T PRK12414 153 DEVAAAIT---PRTRMIIVNT-PHNPSATVF-SAADLARLAQLTRNTDIVILSDEVYEHVVFDGARHHSMARHRELAERS 227 (384)
T ss_pred HHHHhhcC---cccEEEEEcC-CCCCCCcCC-CHHHHHHHHHHHHHCCeEEEEhhhhhhccCCCCCccCcccCcCccCcE
Confidence 88888774 2345555554 599999876 67789999999999999999999998764334211 11 111222233
Q ss_pred e---eeccccC-CCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh-cccHHHHHHHHHHHH
Q psy8199 487 L---CLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN-KDNILQRISQDMKKI 561 (965)
Q Consensus 487 v---t~sK~l~-gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~-~~~~~~~~~~~~~~l 561 (965)
+ +|||.++ .| +++|++++++++++.+.. .....+++.+.+++.++.+.|+.-. .....+.++++.+.+
T Consensus 228 i~~~SfSK~~~~pG-lRiG~~v~~~~l~~~l~~------~~~~~~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~r~~l 300 (384)
T PRK12414 228 VIVSSFGKSYHVTG-WRVGYCLAPAELMDEIRK------VHQFMVFSADTPMQHAFAEALAEPASYLGLGAFYQRKRDLL 300 (384)
T ss_pred EEEecccccccCcc-ceEEEEecCHHHHHHHHH------HHhheecCCCcHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Confidence 3 6899886 45 899999999999887765 2233466778889988888774211 012345566666667
Q ss_pred HHHHHcccCCCceeeeeceeEEEEE-EEeecCccchhhHHHHHH-HHHHHcCcEEeec---------CCEEEEeCCcccC
Q psy8199 562 TKALTSLITHPKIINFRQKGMIWAF-DVIIEDPEQIETFSKKFF-VAALKNELLLRPI---------GNTVYLMPPYILN 630 (965)
Q Consensus 562 ~~~L~~l~~~~~i~~v~g~G~~~~i-~~~~~~~~~~~~~~~~~~-~~l~~~Gi~~~~~---------~~~lR~~p~~~~t 630 (965)
.+.|++. ++...++.|.|+.+ .+. ... ... ...+. +.+.++||.+.|+ .+++|++ +..+
T Consensus 301 ~~~L~~~----g~~~~~~~gg~~~~~~~~-~~~--~~~-~~~~~~~~l~~~gV~v~pg~~f~~~~~~~~~iRis--~~~~ 370 (384)
T PRK12414 301 ARELAGS----RFELLPSEGSFFMLARFR-HFS--DES-DSDFVLRLIRDARVATIPLSAFYTDGTDTGLIRLS--FSKD 370 (384)
T ss_pred HHHHHhC----CCeecCCCcceEEEEccc-ccC--CCC-HHHHHHHHHHhCCEEEecchhhcCCCCCCCEEEEE--ecCC
Confidence 6766653 34445566766555 443 100 001 22343 5667899999873 2579999 5567
Q ss_pred HHHHHHHHHhhh
Q psy8199 631 KNEIQHMTSAIF 642 (965)
Q Consensus 631 ~~~i~~~~~~l~ 642 (965)
++++++.++++.
T Consensus 371 ~~~~~~~~~rl~ 382 (384)
T PRK12414 371 DATLVEGARRLC 382 (384)
T ss_pred HHHHHHHHHHHh
Confidence 888998888775
|
|
| >PRK08068 transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.7e-18 Score=196.78 Aligned_cols=334 Identities=10% Similarity=-0.003 Sum_probs=210.1
Q ss_pred CCcccccccccchhccCCCCCHHHHHHHHHHHhhc--cccccCCCCcHHHHHHHHHHHhhcC--CCCC-eEEEcCChhHH
Q psy8199 252 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKL--EHVMLSNLTHKPVIKLSEKLSSLTQ--YKLG-HCFYGSDGASA 326 (965)
Q Consensus 252 dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~--~~~~~~~~~~~~~~~la~~l~~~~~--~~~~-~v~~~~sGseA 326 (965)
.|..++|+..+. +-...+|.+.+++.+.+... ..|....+..+.+..+++.+.+..+ ...+ ++++|+||+++
T Consensus 30 ~~~~~i~l~~~~---p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~aia~~~~~~~g~~~~~~~~i~it~G~~~~ 106 (389)
T PRK08068 30 EGHDVINLGQGN---PDQPTPEHIVEALQEAAENPANHKYSPFRGYPFLKEAAADFYKREYGVTLDPETEVAILFGGKAG 106 (389)
T ss_pred cCCCeEEecCCC---CCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHHH
Confidence 355678887773 33446788999998887642 2233234455666777777765444 3456 79999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHH
Q psy8199 327 VEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARC 406 (965)
Q Consensus 327 ~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (965)
+..++..... +++.|++.+++|.++...+...+. .+..+|.....+.. .
T Consensus 107 l~~~~~~~~~--------~gd~vlv~~P~y~~~~~~~~~~g~-------------~~~~i~~~~~~~~~----------~ 155 (389)
T PRK08068 107 LVELPQCLMN--------PGDTILVPDPGYPDYLSGVALARA-------------QFETMPLIAENNFL----------P 155 (389)
T ss_pred HHHHHHHhCC--------CCCEEEEcCCCCcchHHHHHhcCC-------------EEEEeecccccCCC----------C
Confidence 9988776532 567899999999877433332221 22333332110100 2
Q ss_pred HHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccc-c-ccccccCCCc
Q psy8199 407 AIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK-F-FACEHAEIWP 484 (965)
Q Consensus 407 d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~-~-~~~~~~~~~p 484 (965)
|++++++.+.+ ...+.++++| +|++|.+. +.+.+++|.++|++||+++|+||+|..|...+. . ......+..+
T Consensus 156 d~~~l~~~~~~--~~~~v~l~~P--~NPTG~~~-s~~~~~~l~~la~~~~~~ii~Deay~~~~~~~~~~~s~~~~~~~~~ 230 (389)
T PRK08068 156 DYTKIPEEVAE--KAKLMYLNYP--NNPTGAVA-TKAFFEETVAFAKKHNIGVVHDFAYGAIGFDGQKPVSFLQTPGAKD 230 (389)
T ss_pred CHHHHHHhccc--cceEEEEECC--CCCCCCcC-CHHHHHHHHHHHHHcCeEEEEehhhhhhccCCCCCcChhhCCCccC
Confidence 56777777642 2234445556 89999866 777799999999999999999999987754442 1 1122223222
Q ss_pred ce---eeeccccC-CCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh--cccHHHHHHHHH
Q psy8199 485 DF---LCLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN--KDNILQRISQDM 558 (965)
Q Consensus 485 Di---vt~sK~l~-gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~--~~~~~~~~~~~~ 558 (965)
.+ -+|||.++ .| +++|++++++++++.+.. .......+..++.+.++.++|..-. -+...+.++++.
T Consensus 231 ~~i~~~S~SK~~g~~G-lRiG~~~~~~~l~~~l~~------~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~r 303 (389)
T PRK08068 231 VGIELYTLSKTFNMAG-WRVAFAVGNESVIEAINL------LQDHLFVSLFGAIQDAAIEALLSDQSCVAELVARYESRR 303 (389)
T ss_pred CEEEEecchhccCCcc-ceeEeEecCHHHHHHHHH------HHhhccCCCChHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 32 27899886 45 899999999999988865 1111223344556666666663211 023455566666
Q ss_pred HHHHHHHHcccCCCceeeeeceeEE-EEEEEeecCccchhhHHHHHHHHHHH-cCcEEeec-------CCEEEEeCCccc
Q psy8199 559 KKITKALTSLITHPKIINFRQKGMI-WAFDVIIEDPEQIETFSKKFFVAALK-NELLLRPI-------GNTVYLMPPYIL 629 (965)
Q Consensus 559 ~~l~~~L~~l~~~~~i~~v~g~G~~-~~i~~~~~~~~~~~~~~~~~~~~l~~-~Gi~~~~~-------~~~lR~~p~~~~ 629 (965)
+.+.+.|+++ ++...++.|.+ +.+.+. +. .....+.+.|++ +||.+.|+ .+++||+ +..
T Consensus 304 ~~~~~~L~~~----g~~~~~~~g~~~~~v~~~--~~----~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~--~~~ 371 (389)
T PRK08068 304 NAFISACREI----GWEVDAPKGSFFAWMPVP--KG----YTSEQFADLLLEKAHVAVAPGNGFGEHGEGYVRVG--LLT 371 (389)
T ss_pred HHHHHHHHHC----CCcccCCCeeEEEEEECC--CC----CCHHHHHHHHHHhCCEEEecchHhCccCCCeEEEE--EcC
Confidence 6676766554 34444566665 456553 11 113467788875 69999873 2589999 455
Q ss_pred CHHHHHHHHHhhhc
Q psy8199 630 NKNEIQHMTSAIFQ 643 (965)
Q Consensus 630 t~~~i~~~~~~l~~ 643 (965)
.++.+.+.++++.+
T Consensus 372 ~~~~l~~al~~l~~ 385 (389)
T PRK08068 372 DEERLREAVERIGK 385 (389)
T ss_pred CHHHHHHHHHHHHH
Confidence 67777777776653
|
|
| >PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2e-19 Score=204.88 Aligned_cols=192 Identities=15% Similarity=0.205 Sum_probs=157.1
Q ss_pred eEeEeeccCCCCCCCCCCCCCCcCCCCcccccCCCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccH--HHHHHHHHHH
Q psy8199 682 AVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDL--DNIENMICEV 759 (965)
Q Consensus 682 ~~~i~~~s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~--~~~~~~~~~i 759 (965)
...+.+ ++|||++|.||..+...+ +++.+++++|+++++.+.+.|+++|.|++........+. ..+.++++.+
T Consensus 147 ~a~v~i-~rGC~~~CsFC~~p~~~g----~~rsr~~e~V~~Ei~~l~~~g~~eI~l~d~~~~~y~~~~~~~~~~~Ll~~l 221 (437)
T PRK14331 147 CAYVTV-MRGCDKKCTYCVVPKTRG----KERSRRLGSILDEVQWLVDDGVKEIHLIGQNVTAYGKDIGDVPFSELLYAV 221 (437)
T ss_pred EEEEEe-ccCcCCCCccCCcccCCC----CcccCCHHHHHHHHHHHHHCCCeEEEEeeeccccccCCCCCCCHHHHHHHH
Confidence 356677 899999999999875322 346679999999999999999999999876543211111 2466666666
Q ss_pred Hhc-C---cEeEE-ecCCCCHHHHHHHHHh--CCCeEeccCCC-CHHHHhcccCCCCHHHHHHHHHHHHHc--CCceeee
Q psy8199 760 KKI-G---LETCL-TLGMLNENQAYRLKKV--GLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNV--GINICCG 829 (965)
Q Consensus 760 ~~~-~---~~i~~-~~~~~~~e~l~~Lk~a--G~~~i~i~~es-~~~~~~~i~~~~~~~~~~~~i~~~~~~--Gi~v~~~ 829 (965)
.+. + +.++. ++..++++.++.|+++ |+.++++++|| ++++++.|+++++.+++.++++.++++ |+.+.++
T Consensus 222 ~~~~g~~~i~~~~~~p~~l~~ell~~~~~~~~~~~~l~igiqSgsd~vLk~m~R~~t~~~~~~~v~~lr~~~~gi~i~~d 301 (437)
T PRK14331 222 AEIDGVERIRFTTGHPRDLDEDIIKAMADIPQVCEHLHLPFQAGSDRILKLMDRGYTKEEYLEKIELLKEYIPDITFSTD 301 (437)
T ss_pred hcCCCccEEEEeccCcccCCHHHHHHHHcCCccCCceecccccCChHHHHHcCCCCCHHHHHHHHHHHHHhCCCCEEecC
Confidence 542 3 23322 4556899999999998 59999999999 999999999999999999999999998 9999999
Q ss_pred EEEec-CCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCCCC-CCCHH
Q psy8199 830 GIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSS-ILDPL 880 (965)
Q Consensus 830 ~i~Gl-~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~~~-~~~~~ 880 (965)
+|+|+ |||.+|+.++++++.+++ ++.+.++.|.|.||||+++.+ ..+.+
T Consensus 302 ~IvG~PgET~ed~~~tl~~l~~l~--~~~i~~f~~sp~pGT~~~~~~~~~~~~ 352 (437)
T PRK14331 302 IIVGFPTETEEDFEETLDVLKKVE--FEQVFSFKYSPRPGTPAAYMEGQEPDE 352 (437)
T ss_pred EEEECCCCCHHHHHHHHHHHHhcC--cceeeeeEecCCCCcchhhCCCCCCHH
Confidence 99999 799999999999999999 899999999999999998865 34443
|
|
| >TIGR00089 RNA modification enzyme, MiaB family | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.7e-19 Score=205.98 Aligned_cols=195 Identities=14% Similarity=0.185 Sum_probs=160.5
Q ss_pred EeEeeccCCCCCCCCCCCCCCcCCCCcccccCCCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcc---cHHHHHHHHHHH
Q psy8199 683 VLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDR---DLDNIENMICEV 759 (965)
Q Consensus 683 ~~i~~~s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~---~~~~~~~~~~~i 759 (965)
..+.+ ++|||++|.||..+...+ +++.+++++|+++++.+.+.|+++|.|++........ ....+.++++.+
T Consensus 141 ~~i~~-srGC~~~CsfC~~~~~~g----~~r~r~~e~Vv~Ei~~l~~~g~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l 215 (429)
T TIGR00089 141 AFLKI-QEGCDKFCTYCIVPYARG----RERSRPPEDILEEVKELVSKGVKEIVLLGQNVGAYGKDLKGETNLADLLREL 215 (429)
T ss_pred EEEEH-HhCcCCCCCcCceecccC----CCCCCCHHHHHHHHHHHHHCCCceEEEEeeccccccCCCCCCcCHHHHHHHH
Confidence 45666 999999999999775433 4667899999999999999999999998864321101 113577788777
Q ss_pred Hhc-Cc-EeEE---ecCCCCHHHHHHHHHhC--CCeEeccCCC-CHHHHhcccCCCCHHHHHHHHHHHHHcC--Cceeee
Q psy8199 760 KKI-GL-ETCL---TLGMLNENQAYRLKKVG--LDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVG--INICCG 829 (965)
Q Consensus 760 ~~~-~~-~i~~---~~~~~~~e~l~~Lk~aG--~~~i~i~~es-~~~~~~~i~~~~~~~~~~~~i~~~~~~G--i~v~~~ 829 (965)
++. ++ .+.+ ++..++++.++.|+++| +.++++++|| ++++++.|+++++.+++.++++.++++| +.+.++
T Consensus 216 ~~~~g~~~i~~~~~~p~~i~~ell~~m~~~~~~~~~l~igiES~s~~vLk~m~R~~~~~~~~~~i~~lr~~~~~i~i~~~ 295 (429)
T TIGR00089 216 SKIDGIERIRFGSSHPDDVTDDLIELIAENPKVCKHLHLPVQSGSDRILKRMNRKYTREEYLDIVEKIRAKIPDAAITTD 295 (429)
T ss_pred hcCCCCCEEEECCCChhhcCHHHHHHHHhCCCccCceeeccccCChHHHHhCCCCCCHHHHHHHHHHHHHHCCCCEEEee
Confidence 764 33 2332 45567999999999995 9999999999 9999999999999999999999999998 889999
Q ss_pred EEEec-CCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCCCC-CCCHHHHHH
Q psy8199 830 GIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSS-ILDPLEFIR 884 (965)
Q Consensus 830 ~i~Gl-~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~~~-~~~~~~~~~ 884 (965)
+|+|+ |||.+++.++++++.+++ ++.+.++.|.|.||||++..+ ..+.+...+
T Consensus 296 ~IvG~PgET~ed~~~tl~~i~~~~--~~~~~~~~~sp~pgT~~~~~~~~v~~~~~~~ 350 (429)
T TIGR00089 296 IIVGFPGETEEDFEETLDLVEEVK--FDKLHSFIYSPRPGTPAADMKDQVPEEVKKE 350 (429)
T ss_pred EEEECCCCCHHHHHHHHHHHHhcC--CCEeeccccCCCCCCchhhCCCCCCHHHHHH
Confidence 99999 799999999999999999 999999999999999999765 455544333
|
This subfamily is aparrently a part of a larger superfamily of enzymes utilizing both a 4Fe4S cluster and S-adenosyl methionine (SAM) to initiate radical reactions. MiaB acts on a particular isoprenylated Adenine base of certain tRNAs causing thiolation at an aromatic carbon, and probably also transferring a methyl grouyp from SAM to the thiol. The particular substrate of the three other clades is unknown but may be very closely related. |
| >PRK06358 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.8e-18 Score=193.40 Aligned_cols=319 Identities=16% Similarity=0.212 Sum_probs=209.6
Q ss_pred cccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHH
Q psy8199 254 KRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKM 333 (965)
Q Consensus 254 ~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~ 333 (965)
..++|+..+ .+++|. +|.+.+++.+.+..... |+.....+|.+.++++++.+.+++++++|+++++..+++.
T Consensus 19 ~~~~~l~~~--~~~~~~-p~~~~~a~~~~~~~~~~-----Y~~~~~~~lr~~ia~~~~~~~~~i~it~Ga~~~l~~~~~~ 90 (354)
T PRK06358 19 NMILDFSAN--INPLGV-PESLKQAITENLDKLVE-----YPDPDYLELRKRIASFEQLDLENVILGNGATELIFNIVKV 90 (354)
T ss_pred cceEEecCC--CCCCCC-CHHHHHHHHHHHHhhhc-----CCCccHHHHHHHHHHHhCCChhhEEECCCHHHHHHHHHHH
Confidence 346888665 345664 78999999987765433 3333346777888888777888999999999999988875
Q ss_pred HHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHH
Q psy8199 334 SFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEI 413 (965)
Q Consensus 334 a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~ 413 (965)
. .+ +.|++.+++|+.+.......+ ..+..+|........ .| +++.+
T Consensus 91 ~---------~~-~~v~i~~P~y~~~~~~~~~~g-------------~~~~~~~~~~~~~~~----------~d-~~~~~ 136 (354)
T PRK06358 91 T---------KP-KKVLILAPTFAEYERALKAFD-------------AEIEYAELTEETNFA----------AN-EIVLE 136 (354)
T ss_pred h---------CC-CcEEEecCChHHHHHHHHHcC-------------CeeEEEeCccccCCC----------cc-HHHHH
Confidence 4 12 579999999988743332221 123333331110000 13 33333
Q ss_pred HHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccccc-ccccccCCCccee---ee
Q psy8199 414 LLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKF-FACEHAEIWPDFL---CL 489 (965)
Q Consensus 414 ~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~-~~~~~~~~~pDiv---t~ 489 (965)
.+.. ....+++++| +|++|.+. +.+.+++|.++|++||+++|+||+|..|-..+.. .........++++ +|
T Consensus 137 ~~~~--~~~~v~~~~P--~NPtG~~~-~~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~vi~~~S~ 211 (354)
T PRK06358 137 EIKE--EIDLVFLCNP--NNPTGQLI-SKEEMKKILDKCEKRNIYLIIDEAFMDFLEENETISMINYLENFKNLIIIRAF 211 (354)
T ss_pred hhcc--CCCEEEEeCC--CCCCCCcc-CHHHHHHHHHHHHhcCCEEEEeCcccccCCCccchhHHHhccCCCCEEEEEec
Confidence 3432 2233456677 89999876 7788999999999999999999999887544321 1122222234554 68
Q ss_pred ccccC-CCcccceeeeec-HHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHH
Q psy8199 490 SKGIT-GGYLPLSLVMTT-DKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK-DNILQRISQDMKKITKALT 566 (965)
Q Consensus 490 sK~l~-gG~~pig~v~~~-~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~-~~~~~~~~~~~~~l~~~L~ 566 (965)
||.++ .| +++|+++++ +.+++.+.. . ...++.+.+++.++.++|+--.- ....+.++++.+++.+.|+
T Consensus 212 SK~~gl~G-~RiG~lv~~~~~~~~~~~~------~--~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~ 282 (354)
T PRK06358 212 TKFFAIPG-LRLGYGLTSNKNLAEKLLQ------M--REPWSINTFADLAGQTLLDDKEYIKKTIQWIKEEKDFLYNGLS 282 (354)
T ss_pred hhhccCcc-hhheeeecCCHHHHHHHHH------h--CCCCcchHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99887 55 899999884 677777765 1 12466788888888888842110 2234455556666666665
Q ss_pred cccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecC-------CEEEEeCCcccCHHHHHHHHH
Q psy8199 567 SLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG-------NTVYLMPPYILNKNEIQHMTS 639 (965)
Q Consensus 567 ~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~-------~~lR~~p~~~~t~~~i~~~~~ 639 (965)
++ +++....+.|.++.+.+. + ...+.+.|.++||.++++. +++|++ ..+.++.+++++
T Consensus 283 ~~---~~~~~~~~~g~f~~~~~~--~-------~~~~~~~l~~~gI~v~~~~~f~~~~~~~iRls---~~~~~~~~~l~~ 347 (354)
T PRK06358 283 EF---KGIKVYKPSVNFIFFKLE--K-------PIDLRKELLKKGILIRSCSNYRGLDENYYRVA---VKSREDNKKLLK 347 (354)
T ss_pred cC---CCcEEcCCcceEEEEEcC--c-------hHHHHHHHHHCCeEEEECCCCCCCCCCEEEEE---eCCHHHHHHHHH
Confidence 43 455555677887777653 2 1467788889999998741 579999 677788888888
Q ss_pred hhhc
Q psy8199 640 AIFQ 643 (965)
Q Consensus 640 ~l~~ 643 (965)
++..
T Consensus 348 ~l~~ 351 (354)
T PRK06358 348 ALEV 351 (354)
T ss_pred HHHH
Confidence 8764
|
|
| >PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.4e-19 Score=204.10 Aligned_cols=192 Identities=14% Similarity=0.202 Sum_probs=158.0
Q ss_pred EeEeEeeccCCCCCCCCCCCCCCcCCCCcccccCCCHHHHHHHHHHHHHCCCCEEEEeeccCCCCccc----HHHHHHHH
Q psy8199 681 LAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRD----LDNIENMI 756 (965)
Q Consensus 681 ~~~~i~~~s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~----~~~~~~~~ 756 (965)
..+.+++ ++|||++|.||..+...+ +++.+++|+|+++++.+.+.|+++|.|.+........+ ...+.+++
T Consensus 212 ~~a~v~I-~~GC~~~CsFC~vp~~rG----~~Rsr~~e~Ii~Ei~~l~~~G~keI~L~g~n~~~yg~d~~~~~~~l~~Ll 286 (509)
T PRK14327 212 IKAWVNI-MYGCDKFCTYCIVPYTRG----KERSRRPEDIIQEVRHLARQGYKEITLLGQNVNAYGKDFEDIEYGLGDLM 286 (509)
T ss_pred eEEEEEe-cCCCCCCCcCCcccccCC----CCeeCCHHHHHHHHHHHHHCCCcEEEEEeeccccCcccccccchHHHHHH
Confidence 3577788 999999999999765322 34568999999999999999999999988654321111 12366777
Q ss_pred HHHHhcCc---EeE-EecCCCCHHHHHHHHHhC--CCeEeccCCC-CHHHHhcccCCCCHHHHHHHHHHHHHc--CCcee
Q psy8199 757 CEVKKIGL---ETC-LTLGMLNENQAYRLKKVG--LDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNV--GINIC 827 (965)
Q Consensus 757 ~~i~~~~~---~i~-~~~~~~~~e~l~~Lk~aG--~~~i~i~~es-~~~~~~~i~~~~~~~~~~~~i~~~~~~--Gi~v~ 827 (965)
+.+.+.++ .+. .++..++++.++.|+++| +.++++++|| |+++++.|++.++.++++++++.++++ ++.++
T Consensus 287 ~~I~~~~i~~ir~~s~~P~~i~deli~~m~~~g~~~~~l~lgvQSgsd~vLk~M~R~~t~e~~~~~v~~lr~~~p~i~i~ 366 (509)
T PRK14327 287 DEIRKIDIPRVRFTTSHPRDFDDHLIEVLAKGGNLVEHIHLPVQSGSTEVLKIMARKYTRESYLELVRKIKEAIPNVALT 366 (509)
T ss_pred HHHHhCCCceEEEeecCcccCCHHHHHHHHhcCCccceEEeccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCcEEe
Confidence 77765433 333 356678999999999999 7899999999 999999999999999999999999998 67888
Q ss_pred eeEEEec-CCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCCCC-CCCH
Q psy8199 828 CGGIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSS-ILDP 879 (965)
Q Consensus 828 ~~~i~Gl-~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~~~-~~~~ 879 (965)
+.+|+|+ |||.+|+.++++++++++ ++.+.++.|.|.||||++..+ +.+.
T Consensus 367 tdiIvGfPgET~edf~~Tl~~v~~l~--~d~~~~f~ysprpGT~a~~~~~~vp~ 418 (509)
T PRK14327 367 TDIIVGFPNETDEQFEETLSLYREVG--FDHAYTFIYSPREGTPAAKMKDNVPM 418 (509)
T ss_pred eeEEEeCCCCCHHHHHHHHHHHHHcC--CCeEEEeeeeCCCCCchHhCcCCCCH
Confidence 8999999 799999999999999999 899999999999999998654 3444
|
|
| >PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.6e-19 Score=201.82 Aligned_cols=192 Identities=11% Similarity=0.167 Sum_probs=158.2
Q ss_pred eEeEeeccCCCCCCCCCCCCCCcCCCCcccccCCCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHh
Q psy8199 682 AVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK 761 (965)
Q Consensus 682 ~~~i~~~s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~ 761 (965)
.+.+.+ ++|||++|+||..+...+ +++.+++|+|+++++.+.+.|++++.|.+........+...+.++++.+.+
T Consensus 155 ~a~l~i-srGC~~~CsFC~ip~~rG----~~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~~~~~y~~~~~~l~~Ll~~l~~ 229 (449)
T PRK14332 155 QAFVTI-MRGCNNFCTFCVVPYTRG----RERSRDPKSIVREIQDLQEKGIRQVTLLGQNVNSYKEQSTDFAGLIQMLLD 229 (449)
T ss_pred eEEEEe-cCCcCCCCCCCCcccccC----CcccCCHHHHHHHHHHHHHCCCeEEEEecccCCcccCCcccHHHHHHHHhc
Confidence 456677 999999999998775322 346689999999999999999999999887654332233457777777654
Q ss_pred c-C---cEeE-EecCCCCHHHHHHHHHhC--CCeEeccCCC-CHHHHhcccCCCCHHHHHHHHHHHHHc--CCceeeeEE
Q psy8199 762 I-G---LETC-LTLGMLNENQAYRLKKVG--LDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNV--GINICCGGI 831 (965)
Q Consensus 762 ~-~---~~i~-~~~~~~~~e~l~~Lk~aG--~~~i~i~~es-~~~~~~~i~~~~~~~~~~~~i~~~~~~--Gi~v~~~~i 831 (965)
. + +.+. .++..++++.++.|+++| +.++++++|| ++++++.|+++++.+++.++++.++++ ++.+.+++|
T Consensus 230 ~~~~~~ir~~~~~p~~~~~ell~~m~~~~~~~~~l~lgvQSgsd~vLk~m~R~~t~~~~~~~i~~lr~~~p~i~i~td~I 309 (449)
T PRK14332 230 ETTIERIRFTSPHPKDFPDHLLSLMAKNPRFCPNIHLPLQAGNTRVLEEMKRSYSKEEFLDVVKEIRNIVPDVGITTDII 309 (449)
T ss_pred CCCcceEEEECCCcccCCHHHHHHHHhCCCccceEEECCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHhCCCCEEEEEEE
Confidence 2 2 2222 245667999999999998 8999999999 999999999999999999999999997 678889999
Q ss_pred Eec-CCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCC-CC-CCCCHH
Q psy8199 832 IGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLY-GS-SILDPL 880 (965)
Q Consensus 832 ~Gl-~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~-~~-~~~~~~ 880 (965)
+|+ |||.+|+.++++++++++ ++.+.++.|.|.||||.+ .. .+++.+
T Consensus 310 vGfPgET~edf~~tl~~v~~l~--~~~~~~f~ys~~~GT~a~~~~~~~v~~~ 359 (449)
T PRK14332 310 VGFPNETEEEFEDTLAVVREVQ--FDMAFMFKYSEREGTMAKRKLPDNVPEE 359 (449)
T ss_pred eeCCCCCHHHHHHHHHHHHhCC--CCEEEEEEecCCCCChhHHhCcCCCCHH
Confidence 999 799999999999999999 999999999999999997 33 334543
|
|
| >TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125 | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.9e-19 Score=202.52 Aligned_cols=194 Identities=15% Similarity=0.202 Sum_probs=158.2
Q ss_pred EeEeeccCCCCCCCCCCCCCCcCCCCcccccCCCHHHHHHHHHHHHHCCCCEEEEeeccCCCCc---ccHHHHHHHHHHH
Q psy8199 683 VLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKD---RDLDNIENMICEV 759 (965)
Q Consensus 683 ~~i~~~s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~---~~~~~~~~~~~~i 759 (965)
..|.+ |+|||++|.||..+...+ +++.+++++|+++++.+.+.|+++|.|++....... ...+++.++++.+
T Consensus 137 ~~i~~-srGC~~~CsfC~~~~~~G----~~r~r~~e~Vv~Ei~~l~~~g~k~i~~~~~d~~~~g~d~~~~~~l~~Ll~~i 211 (430)
T TIGR01125 137 AYLKV-AEGCNRRCAFCIIPSIRG----KLRSRPIEEILKEAERLVDQGVKEIILIAQDTTAYGKDLYRESKLVDLLEEL 211 (430)
T ss_pred EEEEE-ccCCCCCCCcCCeecccC----CceecCHHHHHHHHHHHHHCCCcEEEEEeECCCccccCCCCcccHHHHHHHH
Confidence 45777 999999999998775432 356689999999999999999999998764321110 1124577777777
Q ss_pred HhcC-cEe----EEecCCCCHHHHHHHHHhC--CCeEeccCCC-CHHHHhcccCCCCHHHHHHHHHHHHHc--CCceeee
Q psy8199 760 KKIG-LET----CLTLGMLNENQAYRLKKVG--LDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNV--GINICCG 829 (965)
Q Consensus 760 ~~~~-~~i----~~~~~~~~~e~l~~Lk~aG--~~~i~i~~es-~~~~~~~i~~~~~~~~~~~~i~~~~~~--Gi~v~~~ 829 (965)
.+.+ +.. .+++..++++.++.|+++| +.++.+++|| ++++++.|+++++.+++.++++.++++ |+.+.++
T Consensus 212 ~~~~~i~~~r~~~~~p~~~~~ell~~~~~~~~~~~~l~iglES~s~~vLk~m~k~~~~~~~~~~i~~l~~~~~~i~i~~~ 291 (430)
T TIGR01125 212 GKVGGIYWIRMHYLYPDELTDDVIDLMAEGPKVLPYLDIPLQHASDRILKLMRRPGSGEQQLDFIERLREKCPDAVLRTT 291 (430)
T ss_pred HhcCCccEEEEccCCcccCCHHHHHHHhhCCcccCceEeCCCCCCHHHHhhCCCCCCHHHHHHHHHHHHHhCCCCeEeEE
Confidence 6644 322 2345678999999999996 8999999999 999999999999999999999999998 5678899
Q ss_pred EEEec-CCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCCCC-CCCHHHHH
Q psy8199 830 GIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSS-ILDPLEFI 883 (965)
Q Consensus 830 ~i~Gl-~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~~~-~~~~~~~~ 883 (965)
+|+|+ |||.+++.++++++.+++ ++.+.++.|.|.|||+++..+ ..+.++..
T Consensus 292 ~I~G~PgET~e~~~~t~~fl~~~~--~~~~~~~~~sp~pGT~~~~~~~~i~~~~~~ 345 (430)
T TIGR01125 292 FIVGFPGETEEDFQELLDFVEEGQ--FDRLGAFTYSPEEGTDAFALPDQVPEEVKE 345 (430)
T ss_pred EEEECCCCCHHHHHHHHHHHHhcC--CCEEeeeeccCCCCCccccCCCCCCHHHHH
Confidence 99999 799999999999999999 899999999999999998764 45654443
|
This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes. |
| >PRK06348 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.8e-18 Score=194.50 Aligned_cols=333 Identities=16% Similarity=0.147 Sum_probs=213.4
Q ss_pred ccccccccchhccCCCCCHHHHHHHHHHHh-hccccccCCCCcHHHHHHHHHHHhhcC--CCCCeEEEcCChhHHHHHHH
Q psy8199 255 RYLDAISSWWVNLFGHSNSYINKALKNQLN-KLEHVMLSNLTHKPVIKLSEKLSSLTQ--YKLGHCFYGSDGASAVEVAL 331 (965)
Q Consensus 255 ~ylD~~~~~~~~~lGh~~p~v~~av~~~~~-~~~~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~~~sGseA~~~Al 331 (965)
.++|+..|.. .++ .+|.+.+++.+.+. ....|....+..+.+..+++.+.+..+ ...+++++|+|+++|+..++
T Consensus 30 ~~i~l~~g~p--~~~-~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~i~it~G~~~al~~~~ 106 (384)
T PRK06348 30 DIIDLSLGDP--DLI-TDESIINAAFEDAKKGHTRYTDSGGDVELIEEIIKYYSKNYDLSFKRNEIMATVGACHGMYLAL 106 (384)
T ss_pred CcEEcCCCCC--CCC-CCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCChhhEEEcCChHHHHHHHH
Confidence 5788877643 344 36777776665443 233344344455667777777765433 35679999999999999998
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHH
Q psy8199 332 KMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDL 411 (965)
Q Consensus 332 ~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l 411 (965)
.+... +++.|++.+++|.++.......+. ....+|.....+.. .|+++|
T Consensus 107 ~~~~~--------~gd~vlv~~p~y~~~~~~~~~~g~-------------~~~~~~~~~~~~~~----------~d~~~l 155 (384)
T PRK06348 107 QSILD--------PGDEVIIHEPYFTPYKDQIEMVGG-------------KPIILETYEEDGFQ----------INVKKL 155 (384)
T ss_pred HHhcC--------CCCEEEEeCCCCcchHHHHHHcCC-------------EEEEecCCcCcCCc----------CCHHHH
Confidence 87743 567899999999887443333322 12233321110100 267888
Q ss_pred HHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccccccccccc-CCCccee---
Q psy8199 412 EILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHA-EIWPDFL--- 487 (965)
Q Consensus 412 e~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~-~~~pDiv--- 487 (965)
++++.. ...+.++++| +|++|.+. +.+.+++|.++|++||+++|.||+|.+|...+.......+ +..+.++
T Consensus 156 ~~~~~~--~~~~v~l~~p--~NPtG~~~-s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~ 230 (384)
T PRK06348 156 EALITS--KTKAIILNSP--NNPTGAVF-SKETLEEIAKIAIEYDLFIISDEVYDGFSFYEDFVPMATLAGMPERTITFG 230 (384)
T ss_pred HHhhCc--CccEEEEeCC--CCCCCcCC-CHHHHHHHHHHHHHCCeEEEEecccccceeCCCccchhhcCCCcCcEEEEe
Confidence 887752 2223444545 89999876 7888999999999999999999999987433322111111 2233443
Q ss_pred eeccccC-CCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHH
Q psy8199 488 CLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK--DNILQRISQDMKKITKA 564 (965)
Q Consensus 488 t~sK~l~-gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~--~~~~~~~~~~~~~l~~~ 564 (965)
+|||.++ .| +++|++++++++++.+.. +....+++.+++++.++..+|+..++ +.+.+..+++.+++.+.
T Consensus 231 SfSK~~~l~G-lRiG~~v~~~~~~~~~~~------~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~~~~ 303 (384)
T PRK06348 231 SFSKDFAMTG-WRIGYVIAPDYIIETAKI------INEGICFSAPTISQRAAIYALKHRDTIVPLIKEEFQKRLEYAYKR 303 (384)
T ss_pred cchhccCCcc-ccceeeecCHHHHHHHHH------HHHhccCCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH
Confidence 6899887 45 899999999999887764 23345677899999999888863211 12344455555666666
Q ss_pred HHcccCCCceeeeeceeEE-EEEEEeecCccchhhHHHHHHHHHH-HcCcEEeec-------CCEEEEeCCcccCHHHHH
Q psy8199 565 LTSLITHPKIINFRQKGMI-WAFDVIIEDPEQIETFSKKFFVAAL-KNELLLRPI-------GNTVYLMPPYILNKNEIQ 635 (965)
Q Consensus 565 L~~l~~~~~i~~v~g~G~~-~~i~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~-------~~~lR~~p~~~~t~~~i~ 635 (965)
|+.+ +++....+.|.| +++.+. ..+. ....+.+.|. +.||.+.|+ .+++|++ +..++++++
T Consensus 304 L~~~---~~~~~~~p~gg~~~~~~~~-~~~~----~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~--~~~~~~~l~ 373 (384)
T PRK06348 304 IESI---PNLSLHPPKGSIYAFINIK-KTGL----SSVEFCEKLLKEAHVLVIPGKAFGESGEGYIRLA--CTVGIEVLE 373 (384)
T ss_pred HhcC---CCceeccCCeeEEEEEecc-cCCC----CHHHHHHHHHHhCCEEEcCchhhccCCCCeEEEE--ecCCHHHHH
Confidence 6543 444444565554 455553 1111 1345667765 579999873 2589999 456888899
Q ss_pred HHHHhhhc
Q psy8199 636 HMTSAIFQ 643 (965)
Q Consensus 636 ~~~~~l~~ 643 (965)
+.++++.+
T Consensus 374 ~al~~l~~ 381 (384)
T PRK06348 374 EAFNRIEK 381 (384)
T ss_pred HHHHHHHh
Confidence 98888754
|
|
| >PRK06290 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.7e-18 Score=196.68 Aligned_cols=345 Identities=11% Similarity=0.061 Sum_probs=214.8
Q ss_pred CCcccccccccchhccCCCCCHHHHHHHHHHHhhc--cccccCCCCcHHHHHHHHHHHhhcC---CCCC-eEEEcCChhH
Q psy8199 252 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKL--EHVMLSNLTHKPVIKLSEKLSSLTQ---YKLG-HCFYGSDGAS 325 (965)
Q Consensus 252 dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~--~~~~~~~~~~~~~~~la~~l~~~~~---~~~~-~v~~~~sGse 325 (965)
.|+.++|+.+|. ..++ .+|.+.+++.+.+... ..|. ..+..+.+..+++.+.+..+ .+.+ +|++|+|+++
T Consensus 42 ~~~~~i~L~~g~--p~~~-~~~~~~~~l~~~~~~~~~~~Y~-~~G~~~lr~aia~~~~~~~g~~~~~~~~~I~it~Gs~~ 117 (410)
T PRK06290 42 PDMELIDMGVGE--PDEM-ADESVVEVLCEEAKKPENRGYA-DNGIQEFKEAAARYMEKVFGVKDIDPVTEVIHSIGSKP 117 (410)
T ss_pred CCCCeEEcCCCC--CCCC-CCHHHHHHHHHHHhCCCCCCCC-CCCcHHHHHHHHHHHHHHcCCCcCCCcceEEEccCHHH
Confidence 467889988874 3455 4678888888766432 1232 24455666777777766544 2345 7999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHH
Q psy8199 326 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIAR 405 (965)
Q Consensus 326 A~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (965)
|+..++.+... +++.|++.+++|.++...+...+. .+..+|........
T Consensus 118 al~~~~~~~~~--------~gd~Vlv~~P~y~~~~~~~~~~g~-------------~v~~v~~~~~~~~~---------- 166 (410)
T PRK06290 118 ALAMLPSCFIN--------PGDVTLMTVPGYPVTGTHTKYYGG-------------EVYNLPLLEENNFL---------- 166 (410)
T ss_pred HHHHHHHHhCC--------CCCEEEEeCCCCccHHHHHHHcCC-------------EEEEEecCCCcCCc----------
Confidence 99988886643 568899999999887433322221 23333332110000
Q ss_pred HHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccc-cccCCCc
Q psy8199 406 CAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFAC-EHAEIWP 484 (965)
Q Consensus 406 ~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~-~~~~~~p 484 (965)
.|++++++.+.. ++.+|++.. ++|++|.+. +.+.+++|.++|++||+++|+||+|..+...+....+ ...+...
T Consensus 167 ~d~~~l~~~~~~---~~k~i~l~n-P~NPTG~v~-s~e~l~~l~~la~~~~~~iI~DEaY~~~~~~~~~~s~~~~~~~~~ 241 (410)
T PRK06290 167 PDLDSIPKDIKE---KAKLLYLNY-PNNPTGAVA-TKEFYEEVVDFAKENNIIVVQDAAYAALTFDGKPLSFLSVPGAKE 241 (410)
T ss_pred CCHHHHHHhhcc---cceEEEEEC-CCCCCCcCC-CHHHHHHHHHHHHHcCeEEEEecchhhceeCCCCcChhcCCCccc
Confidence 267777777642 345555553 399999877 7788999999999999999999999876333322111 1112111
Q ss_pred -ce--eeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh-cccHHHHHHHHHHH
Q psy8199 485 -DF--LCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN-KDNILQRISQDMKK 560 (965)
Q Consensus 485 -Di--vt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~-~~~~~~~~~~~~~~ 560 (965)
.+ -+|||.++..++++|++++++++++.+.. .....+.+.+.+++.++.++|+.-+ .+...++++++.+.
T Consensus 242 ~~I~i~SfSK~~g~~GlRiG~ii~~~~l~~~l~~------~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~ 315 (410)
T PRK06290 242 VGVEIHSLSKAYNMTGWRLAFVVGNELIVKAFAT------VKDNNDSGQFIAIQKAGIYALDHPEITEKIREKYSRRLDK 315 (410)
T ss_pred cEEEEeechhhcCCchhheEeEEeCHHHHHHHHH------HHhccccCCcHHHHHHHHHHhhCcHHHHHHHHHHHHHHHH
Confidence 12 26899886323899999999999988865 1122233445678888878775211 12245555666666
Q ss_pred HHHHHHcccCCCceeeeeceeEEEEE-EEeecCccc-h--hhHHHHHHHHHHHcCc-EEeec---CCEEEEeCCc-ccCH
Q psy8199 561 ITKALTSLITHPKIINFRQKGMIWAF-DVIIEDPEQ-I--ETFSKKFFVAALKNEL-LLRPI---GNTVYLMPPY-ILNK 631 (965)
Q Consensus 561 l~~~L~~l~~~~~i~~v~g~G~~~~i-~~~~~~~~~-~--~~~~~~~~~~l~~~Gi-~~~~~---~~~lR~~p~~-~~t~ 631 (965)
+.+.|++. ++...++.|.|+.+ .+. +... . ......+.+.|.++|+ ++.|+ ++++||+... ..++
T Consensus 316 l~~~L~~~----g~~~~~p~g~f~l~v~lp--~~~~~~~~~~~~~~~~~~Ll~~~~v~~~p~~~~~~~lRi~~~~~~~~~ 389 (410)
T PRK06290 316 LVKILNEV----GFKAEMPGGTFYLYVKAP--KGTKSGIKFENAEEFSQYLIKEKLISTVPWDDAGHFLRFSVTFEAKDE 389 (410)
T ss_pred HHHHHHhC----CCeecCCCeeeEEEEECC--CccccCCCCCCHHHHHHHHHHhCCEEEECCccccCeEEEEEEcccccc
Confidence 66666553 34445566666654 543 1100 0 0124468888888765 44453 3589999321 1477
Q ss_pred HHHHHHHHhhhcccccH
Q psy8199 632 NEIQHMTSAIFQTFNEL 648 (965)
Q Consensus 632 ~~i~~~~~~l~~~~~~~ 648 (965)
++.+++++++.+.+..+
T Consensus 390 ~~~~~~~~~l~~~~~~~ 406 (410)
T PRK06290 390 EEEDRILEEIKRRLSDV 406 (410)
T ss_pred cchhHHHHHHHHHHhhc
Confidence 78888888887665543
|
|
| >PTZ00433 tyrosine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.6e-18 Score=196.42 Aligned_cols=348 Identities=10% Similarity=0.008 Sum_probs=218.2
Q ss_pred eEEEecCCcccccccccchhcc--CCCCCHHHHHHHHHHHhh--ccccccCCCCcHHHHHHHHHHHhhc--------CCC
Q psy8199 246 SKLITFSGKRYLDAISSWWVNL--FGHSNSYINKALKNQLNK--LEHVMLSNLTHKPVIKLSEKLSSLT--------QYK 313 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~--lGh~~p~v~~av~~~~~~--~~~~~~~~~~~~~~~~la~~l~~~~--------~~~ 313 (965)
.++.+..|+.++||..|..... +- .++.+.+++.+.+.. ...|....+..+.+..+++.+.+.+ ..+
T Consensus 25 ~~~~~~~~~~~i~l~~g~p~~~~~~~-p~~~~~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~~~~~~~~~~~~ 103 (412)
T PTZ00433 25 NAKPSPSPKSIIKLSVGDPTLDGNLL-TPAIQTKALVEAVDSQECNGYPPTVGSPEAREAVATYWRNSFVHKESLKSTIK 103 (412)
T ss_pred hhccCCCCCCeeecCCcCCCCcCCCC-CCHHHHHHHHHHhhcCCCCCCCCCCCcHHHHHHHHHHHHhhccccccccCCCC
Confidence 6677789999999998865321 22 467889999887764 2234333345666677777776532 135
Q ss_pred CCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCC-C
Q psy8199 314 LGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDS-R 392 (965)
Q Consensus 314 ~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 392 (965)
.+++++|+|+++|+..++..... +++.|++.+++|.++...+...+ ..+..+|.... .
T Consensus 104 ~~~i~it~G~~~al~~~~~~~~~--------~gd~vlv~~P~y~~~~~~~~~~g-------------~~~~~i~~~~~~~ 162 (412)
T PTZ00433 104 KDNVVLCSGVSHAILMALTALCD--------EGDNILVPAPGFPHYETVCKAYG-------------IEMRFYNCRPEKD 162 (412)
T ss_pred hhhEEEeCChHHHHHHHHHHhcC--------CCCEEEEccCCcccHHHHHHHcC-------------CEEEEEecCcccc
Confidence 67999999999999999987643 56889999999988743322222 12333443211 1
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccc
Q psy8199 393 NINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTG 472 (965)
Q Consensus 393 ~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G 472 (965)
.. .|+++|++++.+ ...+.++++| +|++|.+. +.+.+++|.++|++||+++|+||+|..|-..+
T Consensus 163 ~~-----------~d~~~l~~~~~~--~~~~i~~~~p--~NPtG~~~-s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~ 226 (412)
T PTZ00433 163 WE-----------ADLDEIRRLVDD--RTKALIMTNP--SNPCGSNF-SRKHVEDIIRLCEELRLPLISDEIYAGMVFNG 226 (412)
T ss_pred Cc-----------CCHHHHHHHhcc--CceEEEEeCC--CCCCCccc-CHHHHHHHHHHHHHcCCeEEEeccccccccCC
Confidence 11 267788877753 2233444455 89999766 67779999999999999999999998774433
Q ss_pred cc-ccccccCCCccee---eeccccCCCcccceeeee------cHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHH
Q psy8199 473 KF-FACEHAEIWPDFL---CLSKGITGGYLPLSLVMT------TDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATL 542 (965)
Q Consensus 473 ~~-~~~~~~~~~pDiv---t~sK~l~gG~~pig~v~~------~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L 542 (965)
.. .....+.-..+++ +|||.++..++++|++++ .+++++.+.. . ...+++.++++++++.++|
T Consensus 227 ~~~~~~~~~~~~~~~i~~~SfSK~~~~pGlRlG~~i~~~p~~~~~~~~~~~~~------~-~~~~~~~~~~~q~a~~~~l 299 (412)
T PTZ00433 227 ATFTSVADFDTTVPRVILGGTAKNLVVPGWRLGWLLLVDPHGNGGDFLDGMKR------L-GMLVCGPCSVVQAALGEAL 299 (412)
T ss_pred CCccchhhccCCCceEEEccchhhcCCCCeeEEEEEEeCCcccHHHHHHHHHH------H-hhccCCCChHHHHHHHHHH
Confidence 21 1111111111233 689988543389999987 2456666644 1 1224567889999888888
Q ss_pred HHHhccc----HHHHHHHHHHHHHHHHHcccCCCceeeeece-eEEEEEEEeecCccchhhHHHHHHHHHH-HcCcEEee
Q psy8199 543 EIFNKDN----ILQRISQDMKKITKALTSLITHPKIINFRQK-GMIWAFDVIIEDPEQIETFSKKFFVAAL-KNELLLRP 616 (965)
Q Consensus 543 ~~~~~~~----~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~-G~~~~i~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~ 616 (965)
+.- .+. ..+.++++.+.+.+.|++ +.++..+.+. |+++.+.+. ...-.......++.+.|+ ++||.+.|
T Consensus 300 ~~~-~~~~~~~~~~~~~~~r~~l~~~L~~---~~~~~~~~p~gg~f~~~~l~-~~~~~~~~~~~~~~~~ll~~~gV~v~p 374 (412)
T PTZ00433 300 LNT-PQEHLEQIVAKLEEGAMVLYNHIGE---CIGLSPTMPRGSMFLMSRLD-LEKFRDIKSDVEFYEKLLEEENVQVLP 374 (412)
T ss_pred hcC-cHHHHHHHHHHHHHHHHHHHHHHhc---CCCCcccCCCeeEEEEEEec-hhhcCCCCCHHHHHHHHHHhcCEEEeC
Confidence 531 122 334444555555555543 2344444555 555665553 100000001345777776 58999988
Q ss_pred cC-----CEEEEeCCcccCHHHHHHHHHhhhccc
Q psy8199 617 IG-----NTVYLMPPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 617 ~~-----~~lR~~p~~~~t~~~i~~~~~~l~~~~ 645 (965)
+. +++|++ +...++++++.++++.+.+
T Consensus 375 g~~f~~~~~iRis--~~~~~e~l~~al~~l~~~~ 406 (412)
T PTZ00433 375 GEIFHMPGFTRLT--ISRPVEVLREAVERIKAFC 406 (412)
T ss_pred ccccCCCCeEEEE--ecCCHHHHHHHHHHHHHHH
Confidence 52 689999 5566888888888876544
|
|
| >TIGR03537 DapC succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.8e-18 Score=190.97 Aligned_cols=332 Identities=13% Similarity=0.038 Sum_probs=209.7
Q ss_pred ccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcC--CCCC-eEEEcCChhHHHHHHH
Q psy8199 255 RYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQ--YKLG-HCFYGSDGASAVEVAL 331 (965)
Q Consensus 255 ~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~--~~~~-~v~~~~sGseA~~~Al 331 (965)
+.+|+.+|.. .++ ..|++.+++++.......|....+..+.+..+++.+.+..+ .+.+ +|++|+|+++|+..++
T Consensus 1 ~~~~~~~g~p--~~~-~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~Iiit~Gs~~ai~~~~ 77 (350)
T TIGR03537 1 RLFDFGTGDP--KEP-TPPFIRKALIDAVPEVSQYPSALGTKALREAISGWFERRFGVKLDPDAQVLPSAGSKEAIFHFP 77 (350)
T ss_pred CeEeccCCCC--CCC-CCHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHHHHHH
Confidence 3567777754 344 37889999988765544444444556777778887776644 3455 8999999999998887
Q ss_pred HHHHHHHHhcCCCC--ceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHH
Q psy8199 332 KMSFHYWYNKGFLN--KKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIF 409 (965)
Q Consensus 332 ~~a~~~~~~~g~~~--~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 409 (965)
..+.. ++ ++.|++.+++|.++...+...+. .+..++.....+. ..|++
T Consensus 78 ~~~~~-------~g~~~d~Vl~~~p~y~~~~~~~~~~g~-------------~~~~v~~~~~~~~----------~~d~~ 127 (350)
T TIGR03537 78 LVFID-------PEEDRRRVIFGTPGYPVYERGALFAGG-------------EPTAVKLKKEDGF----------LLRLE 127 (350)
T ss_pred HHHcC-------CCCCCceEEEcCCCCcchHHHHHhcCC-------------EEEEcccCcccCC----------ccCHH
Confidence 76533 22 26899999999888544333222 2223332111110 02678
Q ss_pred HHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCccee--
Q psy8199 410 DLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL-- 487 (965)
Q Consensus 410 ~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDiv-- 487 (965)
++++++.+ ++.++++.+ ++|++|.+. +.+.+++|.++|++||+++|+||+|..+...+........+. +.++
T Consensus 128 ~l~~~~~~---~~~~i~i~~-p~NPtG~~~-~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~-~~~i~~ 201 (350)
T TIGR03537 128 KVEKSILE---ETKIVWINY-PHNPTGATA-PRSYLKETIAMCREHGIILCSDECYTEIYFGEPPHSALEVGI-ENVLAF 201 (350)
T ss_pred HHHHhhhh---ccEEEEEeC-CCCCcCccc-CHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCchhhcCc-CCEEEE
Confidence 88887753 345555555 589999765 777899999999999999999999975422222211111221 2233
Q ss_pred -eeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHH
Q psy8199 488 -CLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN-KDNILQRISQDMKKITKAL 565 (965)
Q Consensus 488 -t~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~-~~~~~~~~~~~~~~l~~~L 565 (965)
+|||.++..++++|++++++++.+.+.. .....+.+.++++++++.+++..-. .....++++++.+.+.+.|
T Consensus 202 ~s~SK~~g~~GlRiG~~~~~~~~~~~~~~------~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~r~~l~~~~~~~~~~l 275 (350)
T TIGR03537 202 HSLSKRSGMTGYRSGFVAGDEKLISFLRK------LRANFGVASPDFVQAAAKAAWSDDNHVLERRKIFKRKRDLFIEFF 275 (350)
T ss_pred eecccccCCccccceeeecCHHHHHHHHH------HHHhhccCCCHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 5799885433899999999988887765 1222334556677777777764100 0123444555555555555
Q ss_pred HcccCCCceeeeeceeE-EEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec-------CCEEEEeCCcccCHHHHHHH
Q psy8199 566 TSLITHPKIINFRQKGM-IWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-------GNTVYLMPPYILNKNEIQHM 637 (965)
Q Consensus 566 ~~l~~~~~i~~v~g~G~-~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-------~~~lR~~p~~~~t~~~i~~~ 637 (965)
+.. ++....+.|. ++.+.+. +. .....+.+.|.++||.+.|+ .+++|++ +..++++++++
T Consensus 276 ~~~----g~~~~~~~g~~~~~~~~~--~~----~~~~~l~~~L~~~gv~v~~g~~f~~~~~~~~Ri~--~~~~~~~~~~~ 343 (350)
T TIGR03537 276 NKV----GLEYLYPDATFYLWVKVP--SG----IDAKDYALRLLENGIVVAPGENFGSGEEGYVRVA--LVPTLEECEEA 343 (350)
T ss_pred HHC----CCcccCCCeEEEEEEECC--CC----CCHHHHHHHHHHCCEEEcCchhhCCCCCCEEEEE--ecCCHHHHHHH
Confidence 443 3443445555 4556553 21 11346788888999999863 2689998 45678889988
Q ss_pred HHhhhc
Q psy8199 638 TSAIFQ 643 (965)
Q Consensus 638 ~~~l~~ 643 (965)
++++.+
T Consensus 344 l~~~~~ 349 (350)
T TIGR03537 344 LRLWER 349 (350)
T ss_pred HHHHhc
Confidence 887753
|
Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade. |
| >PRK14325 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.3e-19 Score=203.02 Aligned_cols=197 Identities=11% Similarity=0.170 Sum_probs=160.2
Q ss_pred EeEeeccCCCCCCCCCCCCCCcCCCCcccccCCCHHHHHHHHHHHHHCCCCEEEEeeccCCCC-c----ccHHHHHHHHH
Q psy8199 683 VLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELK-D----RDLDNIENMIC 757 (965)
Q Consensus 683 ~~i~~~s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~-~----~~~~~~~~~~~ 757 (965)
..+.+ ++|||++|.||..+...++ ++.+++++|+++++.+.+.|+++|.|++...... . .....+.++++
T Consensus 149 ~~i~i-srGCp~~CsFC~~p~~~G~----~~sr~~e~Iv~Ei~~l~~~g~~ei~l~d~~~~~y~~~~~~~~~~~l~~Ll~ 223 (444)
T PRK14325 149 AFVSI-MEGCDKYCTFCVVPYTRGE----EVSRPVDDVLAEVAQLAEQGVREITLLGQNVNAYRGEGPDGEIADFAELLR 223 (444)
T ss_pred EEEEh-hhCCCCCCCccccCcccCC----cccCCHHHHHHHHHHHHHCCCcEEEEEeeccccccCCCCCCCcchHHHHHH
Confidence 44566 8999999999987653332 2347999999999999999999999987654321 0 11346777777
Q ss_pred HHHhc-C---cEeEE-ecCCCCHHHHHHHHHhC--CCeEeccCCC-CHHHHhcccCCCCHHHHHHHHHHHHHc--CCcee
Q psy8199 758 EVKKI-G---LETCL-TLGMLNENQAYRLKKVG--LDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNV--GINIC 827 (965)
Q Consensus 758 ~i~~~-~---~~i~~-~~~~~~~e~l~~Lk~aG--~~~i~i~~es-~~~~~~~i~~~~~~~~~~~~i~~~~~~--Gi~v~ 827 (965)
.+.+. + +.+.. ++..++++.++.|+++| +.++++++|| ++++++.|+++++.+++.++++.++++ |+.+.
T Consensus 224 ~l~~~~~~~~ir~~~~~p~~~~~ell~~l~~~~~~~~~l~igiqSgs~~vLk~m~R~~~~~~~~~~i~~lr~~~~gi~v~ 303 (444)
T PRK14325 224 LVAAIDGIERIRYTTSHPRDFTDDLIEAYADLPKLVPFLHLPVQSGSDRILKAMNRGHTALEYKSIIRKLRAARPDIAIS 303 (444)
T ss_pred HHHhcCCccEEEEccCCcccCCHHHHHHHHcCCcccCceeccCCcCCHHHHHhCCCCCCHHHHHHHHHHHHHHCCCCEEE
Confidence 77653 3 33322 56678999999999986 8999999999 999999999999999999999999997 78999
Q ss_pred eeEEEec-CCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCCCC-CCCHHHHHHHH
Q psy8199 828 CGGIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSS-ILDPLEFIRTI 886 (965)
Q Consensus 828 ~~~i~Gl-~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~~~-~~~~~~~~~~i 886 (965)
+++|+|+ |||.+++.++++++.+++ ++.+.++.|.|.||||++..+ +.+.+...+..
T Consensus 304 ~~~IvG~PgET~ed~~~tl~~i~~~~--~~~~~~~~~sp~pGT~~~~~~~~v~~~~~~~r~ 362 (444)
T PRK14325 304 SDFIVGFPGETDEDFEATMKLIEDVG--FDQSFSFIYSPRPGTPAADLPDDVPEEVKKERL 362 (444)
T ss_pred eeEEEECCCCCHHHHHHHHHHHHhcC--CCeeeeeeccCCCCCchhhCCCCCCHHHHHHHH
Confidence 9999999 799999999999999999 899999999999999999865 55665443333
|
|
| >TIGR01212 radical SAM protein, TIGR01212 family | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.2e-19 Score=191.16 Aligned_cols=217 Identities=19% Similarity=0.272 Sum_probs=168.7
Q ss_pred HHhcCCCeEEEeEeEeeccCCCCC--------CCCCCCCCCcCCCCcc---cccCCCH-HHHHHHHHHHHHCCCCEEEEe
Q psy8199 671 RKYFDANEIELAVLLSIKTGGCTE--------DCGYCPQSTHYNTEIT---ATKILSI-ESVITAAQKAKSDGATRFCMG 738 (965)
Q Consensus 671 ~~~~~g~~~~~~~~i~~~s~~C~~--------~C~fC~~~~~~~~~~~---~~~~~~~-eei~~~~~~~~~~g~~~i~l~ 738 (965)
|++| |.+|+- ..+.. .-.||| .|.||+.... + ... ..+..+. +||.+.+....+.+...++|+
T Consensus 10 ~~~~-g~~v~k-~~~~~-g~~cpnrdg~~~~~gC~FC~~~~~-~-~~~~~~~~~~~~i~~qi~~~~~~~~~~~~~~iyf~ 84 (302)
T TIGR01212 10 KERY-GQKVFK-ITLHG-GFSCPNRDGTKGRGGCTFCNDASR-P-IFADEYTQARIPIKEQIKKQMKKYKKDKKFIAYFQ 84 (302)
T ss_pred HHHc-CCceEE-eecCC-CCCCCCCCCCCCCCCcccCCCCCC-c-cccccccccCCCHHHHHHHHHHHhhccCEEEEEEE
Confidence 6667 666664 34455 788999 5999986542 2 111 1123443 334444444433333347777
Q ss_pred eccCCCCcccHHHHHHHHHHHHhc----CcEeEEecCCCCHHHHHHHH---HhCC-CeEeccCCC-CHHHHhcccCCCCH
Q psy8199 739 AAWRELKDRDLDNIENMICEVKKI----GLETCLTLGMLNENQAYRLK---KVGL-DYYNHNLDT-SPKLYGDIISTRDY 809 (965)
Q Consensus 739 ~g~~~~~~~~~~~~~~~~~~i~~~----~~~i~~~~~~~~~e~l~~Lk---~aG~-~~i~i~~es-~~~~~~~i~~~~~~ 809 (965)
+|.+ ...+.+.+.++++.+++. ++.+.+++..++++.++.|+ ++|+ .++.+|+|| ++++++.++++++.
T Consensus 85 ggt~--t~l~~~~L~~l~~~i~~~~~~~~isi~trpd~l~~e~l~~L~~l~~~G~~~~i~lGlQS~~d~~L~~i~Rg~t~ 162 (302)
T TIGR01212 85 AYTN--TYAPVEVLKEMYEQALSYDDVVGLSVGTRPDCVPDEVLDLLAEYVERGYEVWVELGLQTAHDKTLKKINRGHDF 162 (302)
T ss_pred CCCc--CCCCHHHHHHHHHHHhCCCCEEEEEEEecCCcCCHHHHHHHHHhhhCCceEEEEEccCcCCHHHHHHHcCcChH
Confidence 7743 456789999999888763 35556688889998777666 5699 579999999 99999999999999
Q ss_pred HHHHHHHHHHHHcCCceeeeEEEec-CCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCCC------CCCCHHHH
Q psy8199 810 ENRLNTLKNVRNVGINICCGGIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGS------SILDPLEF 882 (965)
Q Consensus 810 ~~~~~~i~~~~~~Gi~v~~~~i~Gl-~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~~------~~~~~~~~ 882 (965)
++..++++.++++|+.+++++|+|+ |||.+++.++++++.+++ ++.+.+++++|.|||+|++. .+++.+++
T Consensus 163 ~~~~~ai~~l~~~gi~v~~~lI~GlPget~e~~~~t~~~l~~l~--~d~i~i~~l~~~pgT~L~~~~~~g~~~~~~~~e~ 240 (302)
T TIGR01212 163 ACYVDAVKRARKRGIKVCSHVILGLPGEDREEMMETAKIVSLLD--VDGIKIHPLHVVKGTKMAKMYEKGELKTLSLEEY 240 (302)
T ss_pred HHHHHHHHHHHHcCCEEEEeEEECCCCCCHHHHHHHHHHHHhcC--CCEEEEEEEEecCCCHHHHHHHcCCCCCCCHHHH
Confidence 9999999999999999999999999 799999999999999999 99999999999999999864 66788998
Q ss_pred HHHHHHHHHHCCCC
Q psy8199 883 IRTIAVARITMPTS 896 (965)
Q Consensus 883 ~~~ia~~R~~lp~~ 896 (965)
++.++.+...+|..
T Consensus 241 ~~~~~~~l~~l~~~ 254 (302)
T TIGR01212 241 ISLACDFLEHLPPE 254 (302)
T ss_pred HHHHHHHHHhCCcC
Confidence 88888887778764
|
This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain. |
| >PRK07309 aromatic amino acid aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.8e-18 Score=192.91 Aligned_cols=337 Identities=15% Similarity=0.096 Sum_probs=215.1
Q ss_pred cccccccccchhccCCCCCHHHHHHHHHHHhhc-cccccCCCCcHHHHHHHHHHHhhcCC--C-CCeEEEcCChhHHHHH
Q psy8199 254 KRYLDAISSWWVNLFGHSNSYINKALKNQLNKL-EHVMLSNLTHKPVIKLSEKLSSLTQY--K-LGHCFYGSDGASAVEV 329 (965)
Q Consensus 254 ~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~-~~~~~~~~~~~~~~~la~~l~~~~~~--~-~~~v~~~~sGseA~~~ 329 (965)
..+||+..|.. .++. ++.+.+++.+.+... ..|....+..+..+.+++.+....+. . .++|++++|+++|+..
T Consensus 30 ~~~i~l~~~~~--~~~~-~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~it~G~~~al~~ 106 (391)
T PRK07309 30 PGILKLTLGEP--DFTT-PDHVKEAAKRAIDANQSHYTGMAGLLELRQAAADFVKEKYNLDYAPENEILVTIGATEALSA 106 (391)
T ss_pred CCeEEcCCCCC--CCCC-CHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHH
Confidence 46899888754 3453 677888888877542 23333344556667777777655442 2 3589999999999999
Q ss_pred HHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHH
Q psy8199 330 ALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIF 409 (965)
Q Consensus 330 Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 409 (965)
++.... .+++.|++.+++|.++.......+ ..+..++....... .|++
T Consensus 107 ~~~~~~--------~~gd~vl~~~p~y~~~~~~~~~~g-------------~~~~~~~~~~~~~~-----------~d~~ 154 (391)
T PRK07309 107 SLTAIL--------EPGDKVLLPAPAYPGYEPIVNLVG-------------AEIVEIDTTENDFV-----------LTPE 154 (391)
T ss_pred HHHHhc--------CCCCEEEEeCCCCcchHHHHHHcC-------------CEEEEEecCCcCCc-----------CCHH
Confidence 988663 256889999999988743222211 12333333211111 2678
Q ss_pred HHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccccc-ccccccCCCccee-
Q psy8199 410 DLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKF-FACEHAEIWPDFL- 487 (965)
Q Consensus 410 ~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~-~~~~~~~~~pDiv- 487 (965)
+|++++++..+++.+|++.. ++|++|.+. +.+.+++|.++|++||+++|+||+|..|-..|.. .....+. ..+++
T Consensus 155 ~l~~~~~~~~~~~~~i~l~~-P~NPtG~~~-s~~~~~~l~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~-~~~~i~ 231 (391)
T PRK07309 155 MLEKAILEQGDKLKAVILNY-PANPTGVTY-SREQIKALADVLKKYDIFVISDEVYSELTYTGEPHVSIAEYL-PDQTIL 231 (391)
T ss_pred HHHHHhhccCCCeEEEEEEC-CCCCCCcCc-CHHHHHHHHHHHHHcCcEEEEEccccceeeCCCCCCCHHHhc-cCCEEE
Confidence 88888865444566666663 488999766 6677999999999999999999999877433421 1111111 12233
Q ss_pred --eeccccC-CCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh--cccHHHHHHHHHHHHH
Q psy8199 488 --CLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN--KDNILQRISQDMKKIT 562 (965)
Q Consensus 488 --t~sK~l~-gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~--~~~~~~~~~~~~~~l~ 562 (965)
+|||.++ .| +++|++++++++++.+.. .....+.+.+++++.++.+.|+... .....++++++.+++.
T Consensus 232 ~~S~SK~~g~~G-lRvG~~v~~~~~~~~~~~------~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 304 (391)
T PRK07309 232 INGLSKSHAMTG-WRIGLIFAPAEFTAQLIK------SHQYLVTAATTMAQFAAVEALTNGKDDALPMKKEYIKRRDYII 304 (391)
T ss_pred EecChhhccCcc-ceeEEEEeCHHHHHHHHH------HHhhcccCCChHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHH
Confidence 6899886 45 899999999999888765 1122334567888888888875321 1223455566666677
Q ss_pred HHHHcccCCCceeeeeceeEEE-EEEEeecCccchhhHHHHHHHH-HHHcCcEEeec-------CCEEEEeCCcccCHHH
Q psy8199 563 KALTSLITHPKIINFRQKGMIW-AFDVIIEDPEQIETFSKKFFVA-ALKNELLLRPI-------GNTVYLMPPYILNKNE 633 (965)
Q Consensus 563 ~~L~~l~~~~~i~~v~g~G~~~-~i~~~~~~~~~~~~~~~~~~~~-l~~~Gi~~~~~-------~~~lR~~p~~~~t~~~ 633 (965)
+.|++. ++....+.|.++ ++.+. ++. ......+.+. +.++||.+.|+ ++++|++ +..+.++
T Consensus 305 ~~l~~~----~~~~~~p~gg~~~~~~l~--~~~--~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~--~~~~~~~ 374 (391)
T PRK07309 305 EKMTDL----GFKIIKPDGAFYIFAKIP--AGY--NQDSFKFLQDFARKKAVAFIPGAAFGPYGEGYVRLS--YAASMET 374 (391)
T ss_pred HHHHHC----CCeecCCCeeEEEEEECC--CCC--CCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEE--ecCCHHH
Confidence 766553 344445555544 44443 110 0112345555 45789999874 2589999 4457788
Q ss_pred HHHHHHhhhccc
Q psy8199 634 IQHMTSAIFQTF 645 (965)
Q Consensus 634 i~~~~~~l~~~~ 645 (965)
++++++++.+.+
T Consensus 375 l~~~i~~l~~~~ 386 (391)
T PRK07309 375 IKEAMKRLKEYM 386 (391)
T ss_pred HHHHHHHHHHHH
Confidence 888888886544
|
|
| >PRK14329 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.9e-19 Score=201.69 Aligned_cols=192 Identities=11% Similarity=0.136 Sum_probs=155.8
Q ss_pred eEeEeeccCCCCCCCCCCCCCCcCCCCcccccCCCHHHHHHHHHHHHHCCCCEEEEeeccCCCC---cc-----cHHHHH
Q psy8199 682 AVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELK---DR-----DLDNIE 753 (965)
Q Consensus 682 ~~~i~~~s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~---~~-----~~~~~~ 753 (965)
.+.+.+ |+|||++|.||..+...+ +++.+++++|+++++.+.+.|+++|.|.+...... .. ....+.
T Consensus 169 ~a~i~i-srGCp~~CsFC~ip~~~G----~~rsrs~e~Vv~Ei~~l~~~g~~eI~l~~~~~~~y~~d~~~~~~~~~~~l~ 243 (467)
T PRK14329 169 SAFVSI-MRGCDNMCTFCVVPFTRG----RERSRDPESILNEVRDLFAKGYKEVTLLGQNVDSYLWYGGGLKKDEAVNFA 243 (467)
T ss_pred EEEEEe-ccCcccCCCCCccccccC----CcccCCHHHHHHHHHHHHHCCCeEEEEEeecccccccccCCccccccccHH
Confidence 356677 999999999998765322 35668999999999999999999999987532110 00 123567
Q ss_pred HHHHHHHhc--CcEeE---EecCCCCHHHHHHHHHh--CCCeEeccCCC-CHHHHhcccCCCCHHHHHHHHHHHHHc--C
Q psy8199 754 NMICEVKKI--GLETC---LTLGMLNENQAYRLKKV--GLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNV--G 823 (965)
Q Consensus 754 ~~~~~i~~~--~~~i~---~~~~~~~~e~l~~Lk~a--G~~~i~i~~es-~~~~~~~i~~~~~~~~~~~~i~~~~~~--G 823 (965)
++++.+.+. +..+. .++..++++.++.|+++ |+.++++++|| ++++++.|++.++.+++.++++.++++ +
T Consensus 244 ~Ll~~l~~~~~~~~ir~~~~~p~~l~~ell~~m~~~~~g~~~i~iglQSgsd~vLk~m~R~~t~~~~~~~i~~ir~~~~~ 323 (467)
T PRK14329 244 QLLEMVAEAVPDMRIRFSTSHPKDMTDDVLEVMAKYDNICKHIHLPVQSGSDRILKLMNRKYTREWYLDRIDAIRRIIPD 323 (467)
T ss_pred HHHHHHHhcCCCcEEEEecCCcccCCHHHHHHHHhCCCCCCeEEeCCCcCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCC
Confidence 777776642 23332 24567899999999997 89999999999 999999999999999999999999997 6
Q ss_pred CceeeeEEEec-CCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCC-C-CCCCHH
Q psy8199 824 INICCGGIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYG-S-SILDPL 880 (965)
Q Consensus 824 i~v~~~~i~Gl-~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~-~-~~~~~~ 880 (965)
+.+.+.+|+|+ |||.+++.++++++++++ ++.+.++.|.|.||||++. . ...+.+
T Consensus 324 ~~i~~d~IvGfPgET~edf~~tl~~i~~l~--~~~~~v~~~sp~pGT~~~~~~~~~v~~~ 381 (467)
T PRK14329 324 CGISTDMIAGFPTETEEDHQDTLSLMEEVG--YDFAFMFKYSERPGTYAARKLEDDVPEE 381 (467)
T ss_pred CEEEEeEEEeCCCCCHHHHHHHHHHHHhhC--CCeEeeeEecCCCCChhhhhCCCCCCHH
Confidence 77889999999 799999999999999999 8999999999999999985 3 234443
|
|
| >PRK07366 succinyldiaminopimelate transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.9e-18 Score=194.85 Aligned_cols=336 Identities=11% Similarity=0.053 Sum_probs=208.2
Q ss_pred CCcccccccccchhccCCCCCHHHHHHHHHHHhhc--cccccCCCCcHHHHHHHHHHHhhcC--CCCC-eEEEcCChhHH
Q psy8199 252 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKL--EHVMLSNLTHKPVIKLSEKLSSLTQ--YKLG-HCFYGSDGASA 326 (965)
Q Consensus 252 dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~--~~~~~~~~~~~~~~~la~~l~~~~~--~~~~-~v~~~~sGseA 326 (965)
+|+.++|+..|.. .++ .+|.+.+++.+.+... ..|....+..+.+..+++.+.+..+ .+.+ +|++|+|+++|
T Consensus 28 ~~~~~i~l~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~Gs~~a 104 (388)
T PRK07366 28 AGKELIDLSLGSS--DLP-APAHALEAIAQSLHDPSTHGYLLFHGTLDFREAAAQWYEQRFGLAVDPETEVLPLIGSQEG 104 (388)
T ss_pred cCCCeEEeCCCCC--CCC-CCHHHHHHHHHHHhCcccCCCCCCCCCHHHHHHHHHHHHHhhCCcCCCcCeEEECCCcHHH
Confidence 5778899877743 344 3788999998877542 1232234455667777777766544 3556 69999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHH
Q psy8199 327 VEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARC 406 (965)
Q Consensus 327 ~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (965)
+..++++... +++.|++.+++|.++...+...+. .+..+|........ .
T Consensus 105 l~~~~~~l~~--------~gd~Vlv~~P~y~~~~~~~~~~g~-------------~~~~v~~~~~~~~~----------~ 153 (388)
T PRK07366 105 TAHLPLAVLN--------PGDFALLLDPGYPSHAGGVYLAGG-------------QIYPMPLRAENDFL----------P 153 (388)
T ss_pred HHHHHHHhCC--------CCCEEEEcCCCCcchHHHHHhcCC-------------EEEEEECCCccCCC----------C
Confidence 9999886643 568899999999888544333322 22333331110000 2
Q ss_pred HHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccccc--ccccccCC-C
Q psy8199 407 AIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKF--FACEHAEI-W 483 (965)
Q Consensus 407 d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~--~~~~~~~~-~ 483 (965)
|++++++.+. .+..+|++.+ ++|++|.+. +.+.+++|.++|++||+++|.||+|..|...+.. .....+.- .
T Consensus 154 d~~~l~~~~~---~~~k~i~l~~-p~NPTG~~~-s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~ 228 (388)
T PRK07366 154 VFADIPTEVL---AQARLMVLSY-PHNPTTAIA-PLSFFQEAVAFCQQHDLVLVHDFPYVDLVFDGEVEPPSILQADPEK 228 (388)
T ss_pred CHHHHHHhhc---ccceEEEEeC-CCCCCCccC-CHHHHHHHHHHHHHcCeEEEEecchhhcccCCCCCCCChhhCCCCc
Confidence 5566665553 2344455555 599999876 7778999999999999999999999887433321 11111111 1
Q ss_pred ccee---eeccccC-CCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc--ccHHHHHHHH
Q psy8199 484 PDFL---CLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK--DNILQRISQD 557 (965)
Q Consensus 484 pDiv---t~sK~l~-gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~--~~~~~~~~~~ 557 (965)
+.++ +|||.++ .| +++|++++++++++.+.. ......++..+..+.+++++|..-.+ +...+.++++
T Consensus 229 ~~vi~~~SfSK~~g~~G-lRiG~~v~~~~li~~l~~------~~~~~~~~~~~~~~~~a~~~l~~~~~~l~~~~~~~~~~ 301 (388)
T PRK07366 229 SVSIEFFTLSKSYNMGG-FRIGFAIGNAQLIQALRQ------VKAVVDFNQYRGILNGAIAALTGPQATVQQTVQIFRQR 301 (388)
T ss_pred ccEEEEeecccccCCcc-hhheehcCCHHHHHHHHH------HHhhcccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 2233 7999886 45 899999999999988765 11112223333334555666631100 1234455556
Q ss_pred HHHHHHHHHcccCCCceeee-eceeEEEEEEEeecCccchhhHHHHHHHHH-HHcCcEEeec-------CCEEEEeCCcc
Q psy8199 558 MKKITKALTSLITHPKIINF-RQKGMIWAFDVIIEDPEQIETFSKKFFVAA-LKNELLLRPI-------GNTVYLMPPYI 628 (965)
Q Consensus 558 ~~~l~~~L~~l~~~~~i~~v-~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l-~~~Gi~~~~~-------~~~lR~~p~~~ 628 (965)
.+++.+.|++. ++... +.-|+++++.+. +.. ......+.+.+ .++||.+.|+ .+++|++ +.
T Consensus 302 r~~l~~~L~~~----~~~~~~p~~g~f~~~~~~--~~~--~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~--~~ 371 (388)
T PRK07366 302 RDAFINALHQI----GWPVPLPEATMYVWAKLP--EPW--QGNSVEFCTQLVAQTGVAASPGSGFGKSGEGYVRFA--LV 371 (388)
T ss_pred HHHHHHHHHHC----CCcccCCCeeEEEEEECC--ccc--CCCHHHHHHHHHHhCCEEEeCchHhCcCCCCeEEEE--ec
Confidence 66666666543 33323 344666666654 110 00123565665 5789999874 2689999 55
Q ss_pred cCHHHHHHHHHhhhc
Q psy8199 629 LNKNEIQHMTSAIFQ 643 (965)
Q Consensus 629 ~t~~~i~~~~~~l~~ 643 (965)
.+++++++.++++.+
T Consensus 372 ~~~~~l~~~l~rl~~ 386 (388)
T PRK07366 372 HDPDILEEAVERIAA 386 (388)
T ss_pred CCHHHHHHHHHHHHH
Confidence 678899999888764
|
|
| >PRK14339 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.7e-19 Score=199.98 Aligned_cols=192 Identities=16% Similarity=0.181 Sum_probs=156.9
Q ss_pred eEeEeeccCCCCCCCCCCCCCCcCCCCcccccCCCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcc------cHHHHHHH
Q psy8199 682 AVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDR------DLDNIENM 755 (965)
Q Consensus 682 ~~~i~~~s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~------~~~~~~~~ 755 (965)
.+.+.+ |+|||++|.||..+...++ .+.+++|+|+++++.+.+.|+++|.|++........ ....+.++
T Consensus 128 ~a~i~i-srGC~~~CsFC~ip~~rG~----~~sr~~e~I~~Ei~~l~~~G~keI~l~~~~~~~yg~d~~~~~~~~~l~~L 202 (420)
T PRK14339 128 KSLVNI-SIGCDKKCTYCIVPHTRGK----EISIPMDLILKEAEKAVNNGAKEIFLLGQNVNNYGKRFSSEHEKVDFSDL 202 (420)
T ss_pred EEEEEe-cCCCCCCCCcCCcccccCC----CCCCCHHHHHHHHHHHHHCCCcEEEEeeeccccccCCCcCCcccccHHHH
Confidence 467788 9999999999998754332 233689999999999999999999998865321100 11246777
Q ss_pred HHHHHh-cCc---Ee-EEecCCCCHHHHHHHHHh--CCCeEeccCCC-CHHHHhcccCCCCHHHHHHHHHHHHHc--CCc
Q psy8199 756 ICEVKK-IGL---ET-CLTLGMLNENQAYRLKKV--GLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNV--GIN 825 (965)
Q Consensus 756 ~~~i~~-~~~---~i-~~~~~~~~~e~l~~Lk~a--G~~~i~i~~es-~~~~~~~i~~~~~~~~~~~~i~~~~~~--Gi~ 825 (965)
++.+.+ .++ .+ +.++..++++.++.|+++ |+.++++++|| ++++++.|+++++.++++++++.++++ |+.
T Consensus 203 l~~l~~~~g~~~ir~~s~~p~~~~~ell~~~~~~~~~~~~l~iglQSgsd~vLk~M~R~~t~~~~~~~v~~lr~~~p~i~ 282 (420)
T PRK14339 203 LDKLSEIEGLERIRFTSPHPLHMDDKFLEEFAKNPKICKSIHMPLQSGSSEILKAMKRGYTKEWFLNRAEKLRALVPEVS 282 (420)
T ss_pred HHHHhcCCCccEEEECCCChhhcCHHHHHHHHcCCCccCceEeCCccCCHHHHHhccCCCCHHHHHHHHHHHHHHCCCCE
Confidence 777665 233 33 234556789999999998 58999999999 999999999999999999999999997 788
Q ss_pred eeeeEEEec-CCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCCCC-CCCHH
Q psy8199 826 ICCGGIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSS-ILDPL 880 (965)
Q Consensus 826 v~~~~i~Gl-~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~~~-~~~~~ 880 (965)
+.+.+|+|+ |||.+|+.++++++.+++ ++.+.++.|.|.||||++..+ +.+.+
T Consensus 283 i~~d~IvGfPgETeedf~~Tl~fl~~l~--~~~~~~f~~sp~pGT~a~~~~~~v~~~ 337 (420)
T PRK14339 283 ISTDIIVGFPGESDKDFEDTMDVLEKVR--FEQIFSFKYSPRPLTEAAAWKNQVDEE 337 (420)
T ss_pred EEEEEEEECCCCCHHHHHHHHHHHHhcC--CCEEeeEecCCCCCCchhhCCCCCCHH
Confidence 999999999 799999999999999999 888899999999999988764 45554
|
|
| >PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.7e-19 Score=200.22 Aligned_cols=191 Identities=10% Similarity=0.160 Sum_probs=157.2
Q ss_pred eEeEeeccCCCCCCCCCCCCCCcCCCCcccccCCCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcc--cHHHHHHHHHHH
Q psy8199 682 AVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDR--DLDNIENMICEV 759 (965)
Q Consensus 682 ~~~i~~~s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~--~~~~~~~~~~~i 759 (965)
...+.+ |+|||++|.||..+...+ +++.+++++|+++++.+.+.|++++.|++........ ....+.++++.+
T Consensus 150 ~a~l~i-srGC~~~CsFC~ip~~rG----~~rsr~~e~Vv~Ei~~l~~~G~~ei~l~~~~~~~y~d~~~~~~l~~Ll~~l 224 (445)
T PRK14340 150 SAFVPV-MRGCNNMCAFCVVPFTRG----RERSHPFASVLDEVRALAEAGYREITLLGQNVNSYSDPEAGADFAGLLDAV 224 (445)
T ss_pred EEEEEe-ccCCCCCCCCCCcccccC----CCcCCCHHHHHHHHHHHHHCCCeEEEEeecccchhhccCCCchHHHHHHHH
Confidence 355777 999999999998775322 3566899999999999999999999998765321110 112466777766
Q ss_pred Hhc--CcEeEE---ecCCCCHHHHHHHHHh--CCCeEeccCCC-CHHHHhcccCCCCHHHHHHHHHHHHHc--CCceeee
Q psy8199 760 KKI--GLETCL---TLGMLNENQAYRLKKV--GLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNV--GINICCG 829 (965)
Q Consensus 760 ~~~--~~~i~~---~~~~~~~e~l~~Lk~a--G~~~i~i~~es-~~~~~~~i~~~~~~~~~~~~i~~~~~~--Gi~v~~~ 829 (965)
.+. +..+.+ ++..++++.++.|+++ |+.++++++|| ++++++.|+++++.+++.++++.+++. |+.+.+.
T Consensus 225 ~~~~~~~rir~~~~~p~~l~~ell~~~~~~~~g~~~l~iglQSgsd~vLk~m~R~~t~~~~~~~v~~lr~~~pgi~i~td 304 (445)
T PRK14340 225 SRAAPEMRIRFTTSHPKDISESLVRTIAARPNICNHIHLPVQSGSSRMLRRMNRGHTIEEYLEKIALIRSAIPGVTLSTD 304 (445)
T ss_pred hhcCCCcEEEEccCChhhcCHHHHHHHHhCCCCCCeEEECCCcCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEecc
Confidence 542 333332 4566789999999996 79999999999 999999999999999999999999998 9999999
Q ss_pred EEEec-CCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCC-C-CCCCH
Q psy8199 830 GIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYG-S-SILDP 879 (965)
Q Consensus 830 ~i~Gl-~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~-~-~~~~~ 879 (965)
+|+|+ |||.+++.++++++++++ ++.+.++.|.|.||||++. . ...+.
T Consensus 305 ~IvGfPgET~edf~~tl~~~~~~~--~~~~~~f~~sp~pGT~~~~~~~~~v~~ 355 (445)
T PRK14340 305 LIAGFCGETEEDHRATLSLMEEVR--FDSAFMFYYSVRPGTLAARTLPDDVPE 355 (445)
T ss_pred EEEECCCCCHHHHHHHHHHHHhcC--CCEEeeEEecCCCCChhhhhCCCCCCH
Confidence 99999 799999999999999999 8999999999999999985 3 34553
|
|
| >PRK08056 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.4e-18 Score=191.68 Aligned_cols=322 Identities=15% Similarity=0.171 Sum_probs=204.3
Q ss_pred cCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHH
Q psy8199 251 FSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVA 330 (965)
Q Consensus 251 ~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~A 330 (965)
.+++.++|+..| .+++| .+|.+.+|+.+.+..... |+.....++.+.+++.++.+.+++++++|+++++..+
T Consensus 17 ~~~~~~i~l~~~--~~~~~-~p~~~~~a~~~~~~~~~~-----y~~~~~~~lr~~ia~~~~~~~~~i~it~Ga~~~l~~~ 88 (356)
T PRK08056 17 ISPDQLLDFSAN--INPLG-MPVSLKRAIIDNLDCAER-----YPDVEYRHLHQALARHHQVPASWILAGNGETESIFAV 88 (356)
T ss_pred CChhhEEEeccc--cCCCC-CCHHHHHHHHHHHHhccc-----CcCccHHHHHHHHHHHhCcChhhEEECCCHHHHHHHH
Confidence 456788998765 45677 678899999887765432 3333457788888888877788999999999999988
Q ss_pred HHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHH
Q psy8199 331 LKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFD 410 (965)
Q Consensus 331 l~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 410 (965)
++.. . ++ .+++..++|..+...+...+ ..+..+|.....+.. .| ++
T Consensus 89 ~~~l-~--------~g-~viv~~P~y~~~~~~~~~~g-------------~~~~~v~~~~~~~~~----------~~-~~ 134 (356)
T PRK08056 89 VSGL-K--------PR-RAMIVTPGFAEYRRALQQVG-------------CEIRRYSLREADGWQ----------LT-DA 134 (356)
T ss_pred HHHh-C--------CC-CEEEeCCCcHHHHHHHHHcC-------------CeEEEEecccccCCC----------cc-HH
Confidence 8754 2 33 46778888876632222111 123334332111100 12 23
Q ss_pred HHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCccee---
Q psy8199 411 LEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL--- 487 (965)
Q Consensus 411 le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDiv--- 487 (965)
+++.+. +++.+|++.. ++|++|.+ .+.+.+++|.++|++||+++|+||+|.+|...+..+.. .....+.++
T Consensus 135 ~~~~~~---~~~k~v~l~~-p~NPTG~~-~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~-~~~~~~~~i~~~ 208 (356)
T PRK08056 135 ILEALT---PDLDCLFLCT-PNNPTGLL-PERQLLQAIAERCKSLNIALILDEAFIDFIPDETGFIP-QLADNPHLWVLR 208 (356)
T ss_pred HHHhcc---CCCCEEEEeC-CcCCCCCC-CCHHHHHHHHHHHHhcCCEEEEecchhccCCcchHHHH-HhccCCCEEEEE
Confidence 333443 2334444433 49999985 47888999999999999999999999887533321111 111113333
Q ss_pred eeccccC-CCcccceeeeec-HHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHH
Q psy8199 488 CLSKGIT-GGYLPLSLVMTT-DKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN-KDNILQRISQDMKKITKA 564 (965)
Q Consensus 488 t~sK~l~-gG~~pig~v~~~-~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~-~~~~~~~~~~~~~~l~~~ 564 (965)
+|||.++ .| +++|+++++ +++++.+.. ....++.+.++++++.++|+--. .....+.++++.+++.+.
T Consensus 209 S~SK~~~~~G-~RiG~~v~~~~~~~~~l~~--------~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~ 279 (356)
T PRK08056 209 SLTKFYAIPG-LRLGYLVNSDDAAVARMRR--------QQMPWSINAFAALAGEVILQDRAYQQATWQWLAEEGARFYQA 279 (356)
T ss_pred echhhccCcc-hhheeeecCCHHHHHHHHH--------hCCCCchhHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 6899887 45 899999984 677776654 12345567788888777774100 112344556666666666
Q ss_pred HHcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecC-------CEEEEeCCcccCHHHHHHH
Q psy8199 565 LTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG-------NTVYLMPPYILNKNEIQHM 637 (965)
Q Consensus 565 L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~-------~~lR~~p~~~~t~~~i~~~ 637 (965)
|+.+ +++...++.|.++++.+. .+ ...+.+.|.++||.++++. +++|++ ..+.++.+.+
T Consensus 280 L~~~---~~~~~~~~~~~~~~~~~~-~~-------~~~~~~~l~~~gI~v~~~~~f~~~~~~~iRis---~~~~~~~~~l 345 (356)
T PRK08056 280 LCAL---PLLTVWPGRANYLFLRCE-RP-------DIDLQRALLTQRILIRSCANYPGLDSRYYRVA---IRSAAENERL 345 (356)
T ss_pred HhcC---CCcEEcCCCCcEEEEEcC-CC-------hHHHHHHHHHCCeEEEECCCCCCCCCCEEEEE---EcCHHHHHHH
Confidence 6544 344444556777766553 11 2357788889999998632 589999 4567778888
Q ss_pred HHhhhc
Q psy8199 638 TSAIFQ 643 (965)
Q Consensus 638 ~~~l~~ 643 (965)
++++.+
T Consensus 346 ~~~l~~ 351 (356)
T PRK08056 346 LAALRN 351 (356)
T ss_pred HHHHHH
Confidence 777754
|
|
| >PRK14335 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.8e-19 Score=200.30 Aligned_cols=193 Identities=10% Similarity=0.163 Sum_probs=157.9
Q ss_pred eEeEeeccCCCCCCCCCCCCCCcCCCCcccccCCCHHHHHHHHHHHHHCCCCEEEEeeccCCCCc-----ccHHHHHHHH
Q psy8199 682 AVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKD-----RDLDNIENMI 756 (965)
Q Consensus 682 ~~~i~~~s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~-----~~~~~~~~~~ 756 (965)
.+.+.+ ++|||++|.||..+...++ ++.+++++|+++++.+.+.|+++|.|.+....... .....+.+++
T Consensus 153 ~~~i~I-~rGC~~~CsfC~~p~~rG~----~rsr~~e~Vv~Ei~~l~~~G~~ei~l~g~~~~~y~~~~~~~~~~~~~~Ll 227 (455)
T PRK14335 153 QSFIPI-MNGCNNFCSYCIVPYVRGR----EISRDLDAILQEIDVLSEKGVREITLLGQNVNSYRGRDREGNIVTFPQLL 227 (455)
T ss_pred eEEEEh-hcCCCCCCCCCCcccCCCC----CccCCHHHHHHHHHHHHHCCCeEEEEEeecccccccccccCCccCHHHHH
Confidence 355667 8999999999997753322 34579999999999999999999999886543110 0112466777
Q ss_pred HHHHh-----cCcE-e---EEecCCCCHHHHHHHHH--hCCCeEeccCCC-CHHHHhcccCCCCHHHHHHHHHHHHHc--
Q psy8199 757 CEVKK-----IGLE-T---CLTLGMLNENQAYRLKK--VGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNV-- 822 (965)
Q Consensus 757 ~~i~~-----~~~~-i---~~~~~~~~~e~l~~Lk~--aG~~~i~i~~es-~~~~~~~i~~~~~~~~~~~~i~~~~~~-- 822 (965)
+.+.+ .++. + ++++..++++.++.|++ +|+.++++++|| ++++++.|+++++.+++.++++.+++.
T Consensus 228 ~~l~~~~~~~~~i~~ir~~s~~p~~i~~ell~~m~~~~~gc~~l~iglQSgsd~vLk~m~R~~t~e~~~~~v~~ir~~~p 307 (455)
T PRK14335 228 RHIVRRAEVTDQIRWIRFMSSHPKDLSDDLIATIAQESRLCRLVHLPVQHGSNGVLKRMNRSYTREHYLSLVGKLKASIP 307 (455)
T ss_pred HHHHHhhcccCCceEEEEeecCcccCCHHHHHHHHhCCCCCCeEEEccCcCCHHHHHHcCCCCCHHHHHHHHHHHHHhCC
Confidence 66631 2232 2 34677789999999998 589999999999 999999999999999999999999998
Q ss_pred CCceeeeEEEec-CCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCCCC-CCCHHH
Q psy8199 823 GINICCGGIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSS-ILDPLE 881 (965)
Q Consensus 823 Gi~v~~~~i~Gl-~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~~~-~~~~~~ 881 (965)
|+.+.+++|+|+ |||.+++.++++++++++ ++.+.++.|.|.||||++..+ ..+.+.
T Consensus 308 gi~i~~d~IvGfPgET~edf~~Tl~~i~~l~--~~~~~~~~~sp~pGT~~~~~~~~v~~~~ 366 (455)
T PRK14335 308 NVALSTDILIGFPGETEEDFEQTLDLMREVE--FDSAFMYHYNPREGTPAYDFPDRIPDEV 366 (455)
T ss_pred CCEEEEEEEEeCCCCCHHHHHHHHHHHHhcC--CCeEEEEEecCCCCCchhhCCCCCCHHH
Confidence 999999999999 799999999999999999 899999999999999999865 455543
|
|
| >PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.5e-19 Score=201.32 Aligned_cols=186 Identities=15% Similarity=0.171 Sum_probs=154.7
Q ss_pred EeEeeccCCCCCCCCCCCCCCcCCCCcccccCCCHHHHHHHHHHHHHCCCCEEEEeeccCCCC---cccHHHHHHHHHHH
Q psy8199 683 VLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELK---DRDLDNIENMICEV 759 (965)
Q Consensus 683 ~~i~~~s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~---~~~~~~~~~~~~~i 759 (965)
+.+.+ |+|||++|.||..+...+ +++.+++|+|+++++.+.+.|+++|.|.+...... ..+...+.++++.+
T Consensus 159 a~v~i-srGCp~~CsFC~ip~~rG----~~rsr~~e~Vv~Ei~~l~~~g~~ei~l~d~n~~~yG~d~~~~~~l~~Ll~~l 233 (502)
T PRK14326 159 AWVSI-SVGCNNTCTFCIVPSLRG----KEKDRRPGDILAEVQALVDEGVLEVTLLGQNVNAYGVSFGDRGAFSKLLRAC 233 (502)
T ss_pred EEEEE-ccCCCCCCccCceeccCC----CcccCCHHHHHHHHHHHHHCCCceEEEEeecccccccCCCCHHHHHHHHHHH
Confidence 56777 999999999999876433 23557999999999999999999999987644211 01234566666666
Q ss_pred Hhc-C---cEeE-EecCCCCHHHHHHHHHhC--CCeEeccCCC-CHHHHhcccCCCCHHHHHHHHHHHHHc--CCceeee
Q psy8199 760 KKI-G---LETC-LTLGMLNENQAYRLKKVG--LDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNV--GINICCG 829 (965)
Q Consensus 760 ~~~-~---~~i~-~~~~~~~~e~l~~Lk~aG--~~~i~i~~es-~~~~~~~i~~~~~~~~~~~~i~~~~~~--Gi~v~~~ 829 (965)
.+. + +.+. .++..++++.++.|+++| +.++++++|| ++++++.|+++++.+++.++++.+++. |+.+.++
T Consensus 234 ~~i~~l~~ir~~~~~p~~~~~ell~~m~~~g~~~~~l~lglQSgsd~iLk~m~R~~t~~~~~~~v~~lr~~~~~i~i~~~ 313 (502)
T PRK14326 234 GEIDGLERVRFTSPHPAEFTDDVIEAMAETPNVCPQLHMPLQSGSDRVLRAMRRSYRSERFLGILEKVRAAMPDAAITTD 313 (502)
T ss_pred HhcCCccEEEEeccChhhCCHHHHHHHHhcCCcCCcEEeccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeEEEE
Confidence 542 3 2332 245667999999999998 8999999999 999999999999999999999999996 7889999
Q ss_pred EEEec-CCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCCCC
Q psy8199 830 GIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSS 875 (965)
Q Consensus 830 ~i~Gl-~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~~~ 875 (965)
+|+|+ |||.+|+.++++++.+++ ++.+.++.|.|.||||+++.+
T Consensus 314 ~IvGfPgET~edf~~Tl~~i~~~~--~~~~~~f~~sp~pGT~~~~~~ 358 (502)
T PRK14326 314 IIVGFPGETEEDFQATLDVVREAR--FSSAFTFQYSKRPGTPAAEME 358 (502)
T ss_pred EEEECCCCCHHHHHHHHHHHHHcC--CCEEEEEeecCCCCChHHhCc
Confidence 99999 799999999999999999 888888899999999999764
|
|
| >PLN02187 rooty/superroot1 | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.6e-18 Score=197.62 Aligned_cols=350 Identities=11% Similarity=0.035 Sum_probs=210.6
Q ss_pred ecCCcccccccccchhccCC--CCCHHHHHHHHHHHhhcc--ccccCCCCcHHHHHHHHHHHhhcC--CCCCeEEEcCCh
Q psy8199 250 TFSGKRYLDAISSWWVNLFG--HSNSYINKALKNQLNKLE--HVMLSNLTHKPVIKLSEKLSSLTQ--YKLGHCFYGSDG 323 (965)
Q Consensus 250 d~dG~~ylD~~~~~~~~~lG--h~~p~v~~av~~~~~~~~--~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~~~sG 323 (965)
..+++.++++..|.. ..+. -.++++.+++.+.+.... .|....+..+.+..+++.+.+..+ .+.++|++|+|+
T Consensus 62 ~~~~~~vi~l~~Gdp-~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lR~aiA~~~~~~~~~~~~~~~I~it~G~ 140 (462)
T PLN02187 62 KDVNKTILPLGHGDP-SVYPCFRTCIEAEDAVVDVLRSGKGNSYGPGAGILPARRAVADYMNRDLPHKLTPEDIFLTAGC 140 (462)
T ss_pred cCCCCCeEECCCCCC-CCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCChHHHHHHHHHHHHHhcCCCCCcccEEEeCCH
Confidence 345677888776632 1111 135678899888776532 222233344556666666655433 356799999999
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCC-CCCCCCCCChhH
Q psy8199 324 ASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPD-SRNINKGNSANE 402 (965)
Q Consensus 324 seA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 402 (965)
++|+..++....+ +++.|++.+++|.++...+...+. .+..++... ....
T Consensus 141 ~~al~~~~~~l~~--------pGd~Vlv~~P~y~~y~~~~~~~g~-------------~~~~~~l~~~~~~~-------- 191 (462)
T PLN02187 141 NQGIEIVFESLAR--------PNANILLPRPGFPHYDARAAYSGL-------------EVRKFDLLPEKEWE-------- 191 (462)
T ss_pred HHHHHHHHHHhcC--------CCCEEEEeCCCCccHHHHHHHcCC-------------EEEEEeCccccCCc--------
Confidence 9999999987643 568899999999887433222221 223333321 1111
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccc-cccccC
Q psy8199 403 IARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFF-ACEHAE 481 (965)
Q Consensus 403 ~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~-~~~~~~ 481 (965)
.|+++|++++. ....+++++.| +|++|.+. +.+.+++|.++|++||+++|+||+|..|-..+..+ ....+.
T Consensus 192 ---~d~~~l~~~~~--~~~~~v~i~nP--~NPTG~v~-s~e~l~~i~~~a~~~~i~iI~DE~Y~~l~f~~~~~~s~~~~~ 263 (462)
T PLN02187 192 ---IDLEGIEAIAD--ENTVAMVVINP--NNPCGNVY-SHDHLKKVAETARKLGIMVISDEVYDRTIFGDNPFVSMGKFA 263 (462)
T ss_pred ---cCHHHHHHhcC--CCcEEEEEeCC--CCCCCCcc-CHHHHHHHHHHHHHCCCEEEEeccccccccCCCCceeHHHhc
Confidence 36788887775 23456777777 89999776 78889999999999999999999999864334322 222221
Q ss_pred CCccee---eeccccCCCcccceeeeec--HHH---HHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc---ccH
Q psy8199 482 IWPDFL---CLSKGITGGYLPLSLVMTT--DKI---YNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK---DNI 550 (965)
Q Consensus 482 ~~pDiv---t~sK~l~gG~~pig~v~~~--~~i---~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~---~~~ 550 (965)
-...++ +|||.++..++++|+++++ +.+ ++.+..- .. ....+.+.+.++++++.++|+.-.+ +..
T Consensus 264 ~~~~vi~l~SfSK~f~~pGlRiG~~v~~~p~~~~~~~~~~~~~---~~-~~~~~~~~s~~~Q~a~~~~L~~~~~~~l~~~ 339 (462)
T PLN02187 264 SIVPVLTLAGISKGWVVPGWKIGWIALNDPEGVFETTKVLQSI---KQ-NLDVTPDPATIIQAALPAILEKADKNFFAKK 339 (462)
T ss_pred cCCcEEEEecchhhcCCccceeEEEEecCchhHHHHHHHHHHH---HH-hccccCCCCHHHHHHHHHHHhcCcHHHHHHH
Confidence 112244 5899854433999999983 222 2233220 00 1112223478899999888853111 123
Q ss_pred HHHHHHHHHHHHHHHHcccCCCcee-eeece-eEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecC-----CEEEE
Q psy8199 551 LQRISQDMKKITKALTSLITHPKII-NFRQK-GMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG-----NTVYL 623 (965)
Q Consensus 551 ~~~~~~~~~~l~~~L~~l~~~~~i~-~v~g~-G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~-----~~lR~ 623 (965)
.+.++++.+.+.+.|+++ +.+. ...+. |+++++.+............+.+.+.+.++||.+.|+. +++|+
T Consensus 340 ~~~l~~~r~~l~~~L~~~---~~~~~~~~P~gg~fl~~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~fg~~~~iRi 416 (462)
T PLN02187 340 NKILKHNVDLVCDRLKDI---PCVVCPKKPESCTYLLTKLELSLMDNIKDDIDFCVKLAREENLVFLPGDALGLKNWMRI 416 (462)
T ss_pred HHHHHHHHHHHHHHHhhC---CCCcCCCCCCEeEEEEeecChhhCCCCCCHHHHHHHHHhhCCEEEECccccCCCCeEEE
Confidence 444555566666666543 4332 22344 45666555310000000112223455678999999852 78999
Q ss_pred eCCcccCHHHHHHHHHhhhcccc
Q psy8199 624 MPPYILNKNEIQHMTSAIFQTFN 646 (965)
Q Consensus 624 ~p~~~~t~~~i~~~~~~l~~~~~ 646 (965)
+ +...++.+++.++++.+.+.
T Consensus 417 s--~~~~~e~l~~al~rL~~~l~ 437 (462)
T PLN02187 417 T--IGVEAHMLEDALERLKGFCT 437 (462)
T ss_pred E--eCCCHHHHHHHHHHHHHHHH
Confidence 9 66778889999988876543
|
|
| >PLN02656 tyrosine transaminase | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.3e-18 Score=192.34 Aligned_cols=345 Identities=17% Similarity=0.110 Sum_probs=213.9
Q ss_pred cCCcccccccccchhccC-CCCCHHHHHHHHHHHhhc--cccccCCCCcHHHHHHHHHHHhhcC--CCCCeEEEcCChhH
Q psy8199 251 FSGKRYLDAISSWWVNLF-GHSNSYINKALKNQLNKL--EHVMLSNLTHKPVIKLSEKLSSLTQ--YKLGHCFYGSDGAS 325 (965)
Q Consensus 251 ~dG~~ylD~~~~~~~~~l-Gh~~p~v~~av~~~~~~~--~~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~~~sGse 325 (965)
..|+.++++..|...... -..++.+.+++.+.+... ..|....+..+.+..+++.+....+ ...++|++++|+++
T Consensus 28 ~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~ 107 (409)
T PLN02656 28 ENGKRVISLGMGDPTAYSCFHTTHVAQEAVVDALQSNKFNGYAPTVGLPQARRAIAEYLSRDLPYKLSLDDVFITSGCTQ 107 (409)
T ss_pred ccCCeeeecCCCCCCcCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCcccEEEeCChHH
Confidence 367899999877543221 335788999998887652 2333334455666777777765543 34579999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCC-CCCCCCCCCChhHHH
Q psy8199 326 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTP-DSRNINKGNSANEIA 404 (965)
Q Consensus 326 A~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 404 (965)
|+..++.+... ++++|++.+++|.++.......+ ..+..+|.. .....
T Consensus 108 al~~~~~~l~~--------~gd~Vlv~~p~y~~~~~~~~~~g-------------~~~~~i~~~~~~~~~---------- 156 (409)
T PLN02656 108 AIDVALSMLAR--------PGANILLPRPGFPIYELCAAFRH-------------LEVRYVDLLPEKGWE---------- 156 (409)
T ss_pred HHHHHHHHHhC--------CCCeEEEeCCCCCcHHHHHHHcC-------------CEEEEEeCCCcCCCC----------
Confidence 99999887643 56789999999976632222211 123333331 11111
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccc-cccccCCC
Q psy8199 405 RCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFF-ACEHAEIW 483 (965)
Q Consensus 405 ~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~-~~~~~~~~ 483 (965)
.|++++++++.+ ...+++++.| +|++|.+. +.+.+++|.++|++||+++|+||+|.+|-..+..+ ....++-.
T Consensus 157 -~d~~~l~~~~~~--~~~~v~l~~P--~NPtG~~~-s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~ 230 (409)
T PLN02656 157 -VDLDAVEALADQ--NTVALVIINP--GNPCGNVY-SYQHLKKIAETAEKLKILVIADEVYGHLAFGSNPFVPMGVFGSI 230 (409)
T ss_pred -CCHHHHHHHhcc--CceEEEEECC--CCCCCCCC-CHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCcccHHHhccc
Confidence 267788877752 3455666666 88999876 67779999999999999999999999875444321 11112212
Q ss_pred ccee---eeccccCCCcccceeeeec--------HHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc---cc
Q psy8199 484 PDFL---CLSKGITGGYLPLSLVMTT--------DKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK---DN 549 (965)
Q Consensus 484 pDiv---t~sK~l~gG~~pig~v~~~--------~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~---~~ 549 (965)
..++ +|||.++..++++|+++++ +++++.+.. .. ....+.++++++++.++|+...+ ..
T Consensus 231 ~~vi~~~SfSK~f~~pGlRiG~~i~~~~~~~~~~~~~~~~~~~------~~-~~~~~~s~~~q~a~~~~l~~~~~~~~~~ 303 (409)
T PLN02656 231 VPVLTLGSLSKRWIVPGWRLGWFVTTDPSGSFRDPKIVERIKK------YF-DILGGPATFIQAAVPTILEQTDESFFKK 303 (409)
T ss_pred CcEEEEcccchhccCcceeEEEEEEeCcccccccHHHHHHHHH------HH-hhhcCCCHHHHHHHHHHHhcCcHHHHHH
Confidence 2233 6899744433899999984 577777654 11 11224578899999888863111 12
Q ss_pred HHHHHHHHHHHHHHHHHcccCCCcee-eeecee-EEEEEEEeecCccch-hhHHHHHHHHHHHcCcEEeecC-----CEE
Q psy8199 550 ILQRISQDMKKITKALTSLITHPKII-NFRQKG-MIWAFDVIIEDPEQI-ETFSKKFFVAALKNELLLRPIG-----NTV 621 (965)
Q Consensus 550 ~~~~~~~~~~~l~~~L~~l~~~~~i~-~v~g~G-~~~~i~~~~~~~~~~-~~~~~~~~~~l~~~Gi~~~~~~-----~~l 621 (965)
..+.++++.+.+.+.|+.+ +.+. ..++.| +++++.+. ...... ......+.+.+.++||.+.|+. +++
T Consensus 304 ~~~~~~~~r~~~~~~L~~~---~~~~~~~~p~gg~~~w~~l~-~~~~~~~~~~~~~~~~~l~~~gV~v~pg~~fg~~~~i 379 (409)
T PLN02656 304 TINILKQSSDICCDRIKEI---PCITCPHKPEGSMAVMVKLN-LSLLEDISDDIDFCFKLAREESVIILPGTAVGLKNWL 379 (409)
T ss_pred HHHHHHHHHHHHHHHHhhC---CCCcCCcCCCeEEEEEEecc-hhhcCCCCCHHHHHHHHHHhCCEEEecchhcCCCCeE
Confidence 3344555555565655543 3332 234555 45555543 100000 0111224467788999999852 689
Q ss_pred EEeCCcccCHHHHHHHHHhhhccc
Q psy8199 622 YLMPPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 622 R~~p~~~~t~~~i~~~~~~l~~~~ 645 (965)
|++ +..+++++++.++++.+.+
T Consensus 380 Ri~--~~~~~e~l~eal~rl~~~~ 401 (409)
T PLN02656 380 RIT--FAADPSSLEEALGRIKSFY 401 (409)
T ss_pred EEE--eCCCHHHHHHHHHHHHHHH
Confidence 999 5568888998888887543
|
|
| >PLN00143 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.8e-18 Score=193.01 Aligned_cols=348 Identities=12% Similarity=0.050 Sum_probs=215.6
Q ss_pred EEecCCcccccccccchhccCCC--CCHHHHHHHHHHHhhc--cccccCCCCcHHHHHHHHHHHhhcC--CCCCeEEEcC
Q psy8199 248 LITFSGKRYLDAISSWWVNLFGH--SNSYINKALKNQLNKL--EHVMLSNLTHKPVIKLSEKLSSLTQ--YKLGHCFYGS 321 (965)
Q Consensus 248 ~~d~dG~~ylD~~~~~~~~~lGh--~~p~v~~av~~~~~~~--~~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~~~ 321 (965)
+-..+|+..|++..|... .+|+ .+|.+.+++.+.++.. .+|....+..+.+..+++.+.+..+ ...++|++|+
T Consensus 26 ~~~~~~~~~i~l~~G~p~-~~~~~~~p~~~~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~I~it~ 104 (409)
T PLN00143 26 FNEDDHRLAISFGFGDPS-CFECFRTTNIAEDAIVEAVRSAKFNSYAPTGGILPARRAIADYLSNDLPYQLSPDDVYLTL 104 (409)
T ss_pred cccCCCCceeeCCCCCCC-CCCCCCCCHHHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCHhhEEEec
Confidence 445667889998877442 2221 5778889998887653 3343445566777778877766543 3567999999
Q ss_pred ChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChh
Q psy8199 322 DGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSAN 401 (965)
Q Consensus 322 sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (965)
|+++|+..+++.... +++.|++.+++|+++.......+. ....++.....+..
T Consensus 105 G~~~al~~~~~~l~~--------~gd~v~v~~P~y~~~~~~~~~~g~-------------~~~~~~~~~~~~~~------ 157 (409)
T PLN00143 105 GCKHAAEIIIKVLAR--------PEANILLPRPGFPDVETYAIFHHL-------------EIRHFDLLPEKGWE------ 157 (409)
T ss_pred ChHHHHHHHHHHHcC--------CCCEEEEcCCCCcCHHHHHHHcCC-------------EEEEEeccCCCCCc------
Confidence 999999999987643 568899999999887433332221 22223321100100
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccccc-cccccc
Q psy8199 402 EIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKF-FACEHA 480 (965)
Q Consensus 402 ~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~-~~~~~~ 480 (965)
.|+++|++++. ....+.++++| +|++|.+. +.+.+++|.++|++|++++|+||+|..|...+.. .....+
T Consensus 158 ----~d~~~l~~~~~--~~~~~~~~~nP--~NPTG~~~-s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~ 228 (409)
T PLN00143 158 ----VDLDAVEAIAD--ENTIAMVIINP--GNPCGSVY-SYEHLNKIAETARKLGILVIADEVYGHIVFGSKPFVPMGLF 228 (409)
T ss_pred ----CCHHHHHHhcc--cCCEEEEEECC--CCCCCCcc-CHHHHHHHHHHHHHcCCeEEEEccccccccCCCCCcchhhh
Confidence 26788888775 23456777777 89999876 7778999999999999999999999987544432 122222
Q ss_pred CCCccee---eeccccCCCcccceeeeec--HHH------HHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc--
Q psy8199 481 EIWPDFL---CLSKGITGGYLPLSLVMTT--DKI------YNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK-- 547 (965)
Q Consensus 481 ~~~pDiv---t~sK~l~gG~~pig~v~~~--~~i------~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~-- 547 (965)
.-.+.++ +|||.++..++++|+++++ +.+ ++.+.. .....++ .+.++++++.++|+.-.+
T Consensus 229 ~~~~~vi~~~SfSK~f~~pGlRvG~~v~~~p~~~~~~~~~~~~~~~------~~~~~~~-~~~~~q~a~~~~l~~~~~~~ 301 (409)
T PLN00143 229 ASIVPVITLGSISKRWMIPGWGLGWLVTCDPSGLLQICEIADSIKK------ALNPAPF-PPTFIQAAIPEILEKTTEDF 301 (409)
T ss_pred cccCcEEEEccchhhcCCCccceEEEEeeCchhhhhhHHHHHHHHH------HHhccCC-CCchHHHHHHHHHhcChHHH
Confidence 2222344 6899854433899999983 333 232322 1111223 477888888888752101
Q ss_pred -ccHHHHHHHHHHHHHHHHHcccCCCceee-eece-eEEEEEEEeecCccchhhHHHHHH-HHHHHcCcEEeecC-----
Q psy8199 548 -DNILQRISQDMKKITKALTSLITHPKIIN-FRQK-GMIWAFDVIIEDPEQIETFSKKFF-VAALKNELLLRPIG----- 618 (965)
Q Consensus 548 -~~~~~~~~~~~~~l~~~L~~l~~~~~i~~-v~g~-G~~~~i~~~~~~~~~~~~~~~~~~-~~l~~~Gi~~~~~~----- 618 (965)
+...+.+++..+++.+.|+++ +.... .++. |+++++.+. ............+. +.+.++||.+.|+.
T Consensus 302 ~~~~~~~~~~~~~~~~~~L~~~---~~~~~~~~p~gg~f~w~~l~-~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~ 377 (409)
T PLN00143 302 FSKTINILRAALAFCYDKLKEI---PCIMCPQKAEGAFFALVKLN-LLLLEDIEDDMEFCLKLAKEESLIILPGVTVGLK 377 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC---CCCCCCCCCCeeEEEEEecc-hhhcCCCCCHHHHHHHHHHhCCEEEeCccccCCC
Confidence 223455555555566655543 32221 2333 556666653 10000000122343 45578999999853
Q ss_pred CEEEEeCCcccCHHHHHHHHHhhhccc
Q psy8199 619 NTVYLMPPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 619 ~~lR~~p~~~~t~~~i~~~~~~l~~~~ 645 (965)
+++|++ +..+++++++.++++.+.+
T Consensus 378 ~~iRi~--~~~~~~~l~~al~rl~~~l 402 (409)
T PLN00143 378 NWLRIT--FAVEQSSLEDGLGRLKSFC 402 (409)
T ss_pred CeEEEE--EcCCHHHHHHHHHHHHHHH
Confidence 689999 5677889999998887654
|
|
| >PRK08363 alanine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.4e-18 Score=193.22 Aligned_cols=345 Identities=14% Similarity=0.066 Sum_probs=213.5
Q ss_pred CCcccccccccchhc-cCCCCCHHHHHHHHHHHhhc-cccccCCCCcHHHHHHHHHHHhhcC--CCCCeEEEcCChhHHH
Q psy8199 252 SGKRYLDAISSWWVN-LFGHSNSYINKALKNQLNKL-EHVMLSNLTHKPVIKLSEKLSSLTQ--YKLGHCFYGSDGASAV 327 (965)
Q Consensus 252 dG~~ylD~~~~~~~~-~lGh~~p~v~~av~~~~~~~-~~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~~~sGseA~ 327 (965)
+|+.++|+..|.... .++ .++.+.+++.+.+... ..|....+..+.++.+++.+.+..+ .+.+++++++|+++|+
T Consensus 28 ~~~~~i~l~~g~p~~~~~~-p~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al 106 (398)
T PRK08363 28 KGIKVIRLNIGDPVKFDFQ-PPEHMKEAYCRAIKEGHNYYGPSEGLPELREAIVKREKRKNGVDITPDDVRVTAAVTEAL 106 (398)
T ss_pred cCCCeEEEeCCCCCcCCCC-CCHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHH
Confidence 467899998886532 444 4788999998877543 2233334455666667766665443 3567999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEe-cCCCCCCCCCCCChhHHHHH
Q psy8199 328 EVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYII-TTPDSRNINKGNSANEIARC 406 (965)
Q Consensus 328 ~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 406 (965)
..++.... .+++.|++.+++|.++...+...+. ....+ +....... .
T Consensus 107 ~~~~~~~~--------~~gd~Vl~~~p~y~~~~~~~~~~g~-------------~~v~~~~~~~~~~~-----------~ 154 (398)
T PRK08363 107 QLIFGALL--------DPGDEILIPGPSYPPYTGLVKFYGG-------------VPVEYRTIEEEGWQ-----------P 154 (398)
T ss_pred HHHHHHhC--------CCCCEEEEcCCCCcchHHHHHHcCC-------------EEEEeccccccCCc-----------C
Confidence 99988663 3668899999999887433322222 11122 11111011 2
Q ss_pred HHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcce
Q psy8199 407 AIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDF 486 (965)
Q Consensus 407 d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDi 486 (965)
|++++++++.+ ...+.+++.| +|++|.+. +.+.+++|.++|++||+++|+||+|..+-..+.......+.-..++
T Consensus 155 d~~~l~~~~~~--~~~~v~l~~p--~NPtG~~~-~~~~~~~l~~~a~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~v 229 (398)
T PRK08363 155 DIDDIRKKITE--KTKAIAVINP--NNPTGALY-EKKTLKEILDIAGEHDLPVISDEIYDLMTYEGKHVSPGSLTKDVPV 229 (398)
T ss_pred CHHHHHhhCCc--ceEEEEEECC--CCCCCcCc-CHHHHHHHHHHHHHcCeEEEEhhhhhhhccCCcccCHHHcCcCCcE
Confidence 56777777642 2234445555 89999876 6777999999999999999999999876433332121112212234
Q ss_pred e---eeccccCCCcccceeeee--cHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc--ccHHHHHHHHHH
Q psy8199 487 L---CLSKGITGGYLPLSLVMT--TDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK--DNILQRISQDMK 559 (965)
Q Consensus 487 v---t~sK~l~gG~~pig~v~~--~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~--~~~~~~~~~~~~ 559 (965)
+ +|||.++..++++|++++ ++++++.+... ... ....+++.+++++.++.++|+...+ .+..++++++.+
T Consensus 230 i~~~SfSK~~~~~GlRiG~~~~~~~~~~~~~l~~~--~~~-~~~~~~~~s~~~q~~~~~~l~~~~~~l~~~~~~~~~~~~ 306 (398)
T PRK08363 230 IVMNGLSKVYFATGWRLGYIYFVDPEGKLAEVREA--IDK-LARIRLCPNTPAQFAAIAGLTGPMDYLEEYMKKLKERRD 306 (398)
T ss_pred EEEecchhccCCccceEEEEEEeCcHHHHHHHHHH--HHH-HhcccccCChHHHHHHHHHHhCChHHHHHHHHHHHHHHH
Confidence 4 689985443389999987 66666554431 000 1112456788888888888852110 123455566666
Q ss_pred HHHHHHHcccCCCceeeeeceeEEEEE-EEeecCccchhhHHHHHHHHHHHcCcEEeec-------CCEEEEeCCcccCH
Q psy8199 560 KITKALTSLITHPKIINFRQKGMIWAF-DVIIEDPEQIETFSKKFFVAALKNELLLRPI-------GNTVYLMPPYILNK 631 (965)
Q Consensus 560 ~l~~~L~~l~~~~~i~~v~g~G~~~~i-~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-------~~~lR~~p~~~~t~ 631 (965)
++.+.|+++ +++....+.|.|+.+ .+. .... ......+.+.|.++||.+.|+ .+++|++ +..++
T Consensus 307 ~l~~~L~~~---~~~~~~~p~g~~~~~~~l~-~~~~--~~~~~~~~~~l~~~gV~v~~g~~f~~~~~~~iRis--~~~~~ 378 (398)
T PRK08363 307 YIYKRLNEI---PGISTTKPQGAFYIFPRIE-EGPW--KDDKEFVLDVLHEAHVLFVHGSGFGEYGAGHFRLV--FLPPV 378 (398)
T ss_pred HHHHHHhcC---CCCEecCCCeEEEEEEEec-cCCC--CCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEE--ecCCH
Confidence 666666543 455545667776665 443 1000 011222345567899999873 2589999 55678
Q ss_pred HHHHHHHHhhhccc
Q psy8199 632 NEIQHMTSAIFQTF 645 (965)
Q Consensus 632 ~~i~~~~~~l~~~~ 645 (965)
+++++.++++.+.+
T Consensus 379 ~~l~~~l~~l~~~~ 392 (398)
T PRK08363 379 EILEEAMDRFEEFM 392 (398)
T ss_pred HHHHHHHHHHHHHH
Confidence 88999888887543
|
|
| >PRK09105 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.5e-18 Score=193.05 Aligned_cols=316 Identities=12% Similarity=0.001 Sum_probs=205.7
Q ss_pred cccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHH
Q psy8199 254 KRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKM 333 (965)
Q Consensus 254 ~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~ 333 (965)
+.++|+..|. +++| .+|.+.+++.+.+....+ |+.....+|.+.+++.++.+.++|++++|+++++..++..
T Consensus 43 ~~~i~l~~~~--~~~~-~~~~~~~a~~~~~~~~~~-----Y~~~~~~~Lr~aia~~~~v~~e~I~it~Gs~~ai~~~~~~ 114 (370)
T PRK09105 43 EGAVFLNANE--CPLG-PSPAARDAAARSAALSGR-----YDLELEDDLRTLFAAQEGLPADHVMAYAGSSEPLNYAVLA 114 (370)
T ss_pred CCcEEecCCC--CCCC-CCHHHHHHHHHHHHHhcC-----CCCchHHHHHHHHHHHhCcChhhEEEcCChHHHHHHHHHH
Confidence 3455555542 3455 578999999887654322 3333467888888888887889999999999999999886
Q ss_pred HHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHH
Q psy8199 334 SFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEI 413 (965)
Q Consensus 334 a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~ 413 (965)
... ++++|++.+++|.++...+...+. .+..+|..... . .|++++++
T Consensus 115 l~~--------~gd~Vli~~P~y~~~~~~~~~~g~-------------~~~~v~~~~~~-~-----------~d~~~l~~ 161 (370)
T PRK09105 115 FTS--------PTAGLVTADPTYEAGWRAADAQGA-------------PVAKVPLRADG-A-----------HDVKAMLA 161 (370)
T ss_pred HcC--------CCCEEEEeCCChHHHHHHHHHcCC-------------eEEEecCCCCC-C-----------CCHHHHHh
Confidence 642 568899999999877433222221 23333332111 0 25666665
Q ss_pred HHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCccee---eec
Q psy8199 414 LLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL---CLS 490 (965)
Q Consensus 414 ~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDiv---t~s 490 (965)
.. ......++++| +|++|.+. +.+.++++.+.|+ +|+++|+||+|..|+.. .......+..++++ +||
T Consensus 162 ~~---~~~~~v~l~nP--~NPTG~~~-~~~~l~~l~~~~~-~~~~lIvDEaY~~f~~~--~s~~~~~~~~~~vi~~~SfS 232 (370)
T PRK09105 162 AD---PNAGLIYICNP--NNPTGTVT-PRADIEWLLANKP-AGSVLLVDEAYIHFSDA--PSVVDLVAQRKDLIVLRTFS 232 (370)
T ss_pred cC---CCCCEEEEeCC--CCCCCcCc-CHHHHHHHHHhCC-CCcEEEEECchHHhccC--cchHHHHhhCCCEEEEeccc
Confidence 42 22334556666 89999876 6676888877754 59999999999877431 11122223345655 589
Q ss_pred cccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHHHccc
Q psy8199 491 KGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN-KDNILQRISQDMKKITKALTSLI 569 (965)
Q Consensus 491 K~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~-~~~~~~~~~~~~~~l~~~L~~l~ 569 (965)
|.++..++++|++++++++++.+.. + ..+..+.+++.++.++|+... -+...++++++.+++.+.|+++
T Consensus 233 K~~g~~GlRiG~~v~~~~~i~~l~~------~---~~~~~~~~~~~aa~~~L~~~~~~~~~~~~~~~~r~~l~~~L~~~- 302 (370)
T PRK09105 233 KLYGMAGMRLGLAAARPDLLAKLAR------F---GHNPLPVPAAAAGLASLRDPKLVPQRRAENAAVREDTIAWLKKK- 302 (370)
T ss_pred HhhcCCccceeeeecCHHHHHHHHh------c---CCCCcCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHC-
Confidence 9886422899999999999988865 1 234467778888888875211 0123445556666666666553
Q ss_pred CCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEee----cCCEEEEeCCcccCHHHHHHHHHhhhc
Q psy8199 570 THPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRP----IGNTVYLMPPYILNKNEIQHMTSAIFQ 643 (965)
Q Consensus 570 ~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~----~~~~lR~~p~~~~t~~~i~~~~~~l~~ 643 (965)
++...++.|.|+.+.+. .+ ..++.+.|.++||.++. ..+++|++. .++++++.+++++..
T Consensus 303 ---g~~~~~~~~~f~~~~~~-~~-------~~~l~~~L~~~gI~v~~~~~~~~~~~Ris~---~~~~~~~~l~~al~~ 366 (370)
T PRK09105 303 ---GYKCTPSQANCFMVDVK-RP-------AKAVADAMAKQGVFIGRSWPIWPNWVRVTV---GSEEEMAAFRSAFAK 366 (370)
T ss_pred ---CCCcCCCCCcEEEEeCC-CC-------HHHHHHHHHHCCcEEecCCCCCCCeEEEEc---CCHHHHHHHHHHHHH
Confidence 34445677887765542 11 34678888899999842 237899993 367788888877754
|
|
| >PRK05904 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.3e-19 Score=194.23 Aligned_cols=212 Identities=11% Similarity=0.125 Sum_probs=165.1
Q ss_pred CCCeEEEeEeEeeccCCCCCCCCCCCCCCcCCCC-cccccCCCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHH
Q psy8199 675 DANEIELAVLLSIKTGGCTEDCGYCPQSTHYNTE-ITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIE 753 (965)
Q Consensus 675 ~g~~~~~~~~i~~~s~~C~~~C~fC~~~~~~~~~-~~~~~~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~ 753 (965)
.+.++.++..| ..|+.+|.||.|.+..... ...+...-.+++..+++......++.+++.||. | ...+.+.+.
T Consensus 3 ~~~~~~lYiHi----PFC~~kC~yC~f~~~~~~~~~~~~~~~~~~~l~~ei~~~~~~~~~tiy~GGGT-P-s~L~~~~l~ 76 (353)
T PRK05904 3 NKKTKHLYIHI----PFCQYICTFCDFKRILKTPQTKKIFKDFLKNIKMHIKNFKIKQFKTIYLGGGT-P-NCLNDQLLD 76 (353)
T ss_pred CCCeeEEEEEe----CCccCcCCCCCCeeccCCcccHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCc-c-ccCCHHHHH
Confidence 35556655555 4599999999987642211 112222234555555544433457888887663 3 345667777
Q ss_pred HHHHHHHhc-----CcEeEEecCCCCHHHHHHHHHhCCCeEeccCCC-CHHHHhcccCCCCHHHHHHHHHHHHHcCCc-e
Q psy8199 754 NMICEVKKI-----GLETCLTLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGIN-I 826 (965)
Q Consensus 754 ~~~~~i~~~-----~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~~es-~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~-v 826 (965)
++++.+++. .+.+.+++..++++.++.|+++|++++++|+|| ++++++.+.+.++.++..++++.++++|+. +
T Consensus 77 ~ll~~i~~~~~~~~eitiE~nP~~lt~e~l~~lk~~G~nrisiGvQS~~d~vL~~l~R~~~~~~~~~ai~~lr~~G~~~v 156 (353)
T PRK05904 77 ILLSTIKPYVDNNCEFTIECNPELITQSQINLLKKNKVNRISLGVQSMNNNILKQLNRTHTIQDSKEAINLLHKNGIYNI 156 (353)
T ss_pred HHHHHHHHhcCCCCeEEEEeccCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcE
Confidence 777777652 345666889999999999999999999999999 999999999999999999999999999996 9
Q ss_pred eeeEEEec-CCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCCCC-CCCHHHHHHHHHHHHHHCC
Q psy8199 827 CCGGIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSS-ILDPLEFIRTIAVARITMP 894 (965)
Q Consensus 827 ~~~~i~Gl-~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~~~-~~~~~~~~~~ia~~R~~lp 894 (965)
+..+|+|+ |||.+++.++++.+.+++ ++.+.++.+.|.|||++.+.. .++.++..++...++..+.
T Consensus 157 ~~dlI~GlPgqt~e~~~~tl~~~~~l~--p~~is~y~L~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~L~ 224 (353)
T PRK05904 157 SCDFLYCLPILKLKDLDEVFNFILKHK--INHISFYSLEIKEGSILKKYHYTIDEDKEAEQLNYIKAKFN 224 (353)
T ss_pred EEEEeecCCCCCHHHHHHHHHHHHhcC--CCEEEEEeeEecCCChHhhcCCCCChHHHHHHHHHHHHHHH
Confidence 99999999 699999999999999999 999999999999999998753 2466666777777776663
|
|
| >PRK05764 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.1e-18 Score=193.52 Aligned_cols=341 Identities=14% Similarity=0.105 Sum_probs=212.5
Q ss_pred CcccccccccchhccCCCCCHHHHHHHHHHHhhc-cccccCCCCcHHHHHHHHHHHhhcC--CCCCeEEEcCChhHHHHH
Q psy8199 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKL-EHVMLSNLTHKPVIKLSEKLSSLTQ--YKLGHCFYGSDGASAVEV 329 (965)
Q Consensus 253 G~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~-~~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~~~sGseA~~~ 329 (965)
+...+|+.+|... ++ .+|++.+++.+.+... ..|....+....+..+++.+.+..+ ...+++++++|+++|+..
T Consensus 30 ~~~~~~l~~~~~~--~~-~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~ 106 (393)
T PRK05764 30 GRDVISLGAGEPD--FD-TPEHIKEAAIEALDDGKTKYTPAAGIPELREAIAAKLKRDNGLDYDPSQVIVTTGAKQALYN 106 (393)
T ss_pred cCCEEEeCCCCCC--CC-CCHHHHHHHHHHHhcCCCCcCCCCChHHHHHHHHHHHHHHhCCCCCHHHEEEeCCcHHHHHH
Confidence 4567888887643 32 5789999998877642 2232233345556666666655443 345689999999999999
Q ss_pred HHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHH
Q psy8199 330 ALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIF 409 (965)
Q Consensus 330 Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 409 (965)
++..+.. +++.|++.+++|.++...+...+. ....+|........ .|++
T Consensus 107 ~~~~~~~--------~gd~vl~~~p~y~~~~~~~~~~g~-------------~~~~~~~~~~~~~~----------~d~~ 155 (393)
T PRK05764 107 AFMALLD--------PGDEVIIPAPYWVSYPEMVKLAGG-------------VPVFVPTGEENGFK----------LTVE 155 (393)
T ss_pred HHHHhcC--------CCCEEEecCCCCcchHHHHHHcCC-------------EEEEEecCcccCCc----------CCHH
Confidence 8887643 567899999998776333222211 22333332110000 2578
Q ss_pred HHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccccc-ccccc--cCCCcce
Q psy8199 410 DLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKF-FACEH--AEIWPDF 486 (965)
Q Consensus 410 ~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~-~~~~~--~~~~pDi 486 (965)
++++.+.. ...+++++.| +|++|.+. +.+.+++|.++|++||+++|+||+|..+...|.. ..... .+..+.+
T Consensus 156 ~l~~~l~~--~~~~v~~~~p--~NPtG~~~-~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~ 230 (393)
T PRK05764 156 QLEAAITP--KTKALILNSP--SNPTGAVY-SPEELEAIADVAVEHDIWVLSDEIYEKLVYDGAEFTSIASLSPELRDRT 230 (393)
T ss_pred HHHHhhCc--cceEEEEECC--CCCCCccc-CHHHHHHHHHHHHHCCcEEEEeccccceeeCCCCcccHHHcCCCCcCCE
Confidence 88887742 2223444555 88888776 6677999999999999999999999876433321 11111 1222223
Q ss_pred e---eeccccC-CCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc--ccHHHHHHHHHHH
Q psy8199 487 L---CLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK--DNILQRISQDMKK 560 (965)
Q Consensus 487 v---t~sK~l~-gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~--~~~~~~~~~~~~~ 560 (965)
+ +|||.++ .| +++|++++++++++.+.. .....+.+.+++++.++.+.|+...+ +.+.+..+++.+.
T Consensus 231 i~~~s~SK~~~~~G-~RiG~i~~~~~~~~~~~~------~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~ 303 (393)
T PRK05764 231 ITVNGFSKAYAMTG-WRLGYAAGPKELIKAMSK------LQSHSTSNPTSIAQYAAVAALNGPQDEVEEMRQAFEERRDL 303 (393)
T ss_pred EEEecCcccccCcc-ceeEEEecCHHHHHHHHH------HHhhcccCCChHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Confidence 3 5899887 45 799999999999888765 12223456788898888888852110 1234444445555
Q ss_pred HHHHHHcccCCCceeeeeceeEE-EEEEEeecCccchhhHHHHHHHHHH-HcCcEEeecC-----CEEEEeCCcccCHHH
Q psy8199 561 ITKALTSLITHPKIINFRQKGMI-WAFDVIIEDPEQIETFSKKFFVAAL-KNELLLRPIG-----NTVYLMPPYILNKNE 633 (965)
Q Consensus 561 l~~~L~~l~~~~~i~~v~g~G~~-~~i~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~~-----~~lR~~p~~~~t~~~ 633 (965)
+.+.|++ ++++....+.|.+ +++.+. .........+.++.+.+. ++||.+.++. +++|++ +..++++
T Consensus 304 l~~~L~~---~~g~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~vRis--~~~~~~~ 377 (393)
T PRK05764 304 MVDGLNE---IPGLECPKPEGAFYVFPNVS-KLLGKSITDSLEFAEALLEEAGVAVVPGIAFGAPGYVRLS--YATSLED 377 (393)
T ss_pred HHHHHhh---CCCCcccCCCcceEEEEecc-cccccccCCHHHHHHHHHHhCCEEEccccccCCCCEEEEE--ecCCHHH
Confidence 6665554 3455555566654 444443 110000001245666665 6799998742 689999 6678999
Q ss_pred HHHHHHhhhccc
Q psy8199 634 IQHMTSAIFQTF 645 (965)
Q Consensus 634 i~~~~~~l~~~~ 645 (965)
++++++++.+.+
T Consensus 378 ~~~~i~~l~~~~ 389 (393)
T PRK05764 378 LEEGLERIERFL 389 (393)
T ss_pred HHHHHHHHHHHH
Confidence 999999887644
|
|
| >PRK08912 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.5e-18 Score=192.56 Aligned_cols=335 Identities=10% Similarity=0.064 Sum_probs=212.1
Q ss_pred cccccccccchhccCCCCCHHHHHHHHHHHhh-ccccccCCCCcHHHHHHHHHHHhhcC--CCCC-eEEEcCChhHHHHH
Q psy8199 254 KRYLDAISSWWVNLFGHSNSYINKALKNQLNK-LEHVMLSNLTHKPVIKLSEKLSSLTQ--YKLG-HCFYGSDGASAVEV 329 (965)
Q Consensus 254 ~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~-~~~~~~~~~~~~~~~~la~~l~~~~~--~~~~-~v~~~~sGseA~~~ 329 (965)
...+|+..|... ++ .+|++.+++.+.+.. ...|....+..+.+..+++.+.+..+ .+.+ ++++|+|+++|+..
T Consensus 26 ~~~i~l~~g~p~--~~-~p~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~ 102 (387)
T PRK08912 26 HGAINLGQGFPD--DP-GPEDVRRAAADALLDGSNQYPPMMGLPELRQAVAAHYARFQGLDLDPETEVMVTSGATEALAA 102 (387)
T ss_pred CCeEEccCCCCC--CC-CCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcccEEEeCCcHHHHHH
Confidence 467888887643 33 368888888877654 23344344456677778877776544 3455 89999999999988
Q ss_pred HHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHH
Q psy8199 330 ALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIF 409 (965)
Q Consensus 330 Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 409 (965)
++..... +++.|++.+++|.++.......+ ..+..+|.+..... .|++
T Consensus 103 ~~~~~~~--------~gd~Vlv~~p~y~~~~~~~~~~g-------------~~~~~~~~~~~~~~-----------~~~~ 150 (387)
T PRK08912 103 ALLALVE--------PGDEVVLFQPLYDAYLPLIRRAG-------------GVPRLVRLEPPHWR-----------LPRA 150 (387)
T ss_pred HHHHhcC--------CCCEEEEeCCCchhhHHHHHHcC-------------CEEEEEecCcccCc-----------CCHH
Confidence 8876532 56789999999977643222211 12333443211111 2567
Q ss_pred HHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccccc-cc-ccccCCCccee
Q psy8199 410 DLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKF-FA-CEHAEIWPDFL 487 (965)
Q Consensus 410 ~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~-~~-~~~~~~~pDiv 487 (965)
++++.+.. ...+.+++.| +|++|.+. +.+.+++|.++|++|++++|+||+|..+-..+.. -. ....+....++
T Consensus 151 ~l~~~~~~--~~~~v~l~~p--~NPtG~~~-s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i 225 (387)
T PRK08912 151 ALAAAFSP--RTKAVLLNNP--LNPAGKVF-PREELALLAEFCQRHDAVAICDEVWEHVVFDGRRHIPLMTLPGMRERTV 225 (387)
T ss_pred HHHHHhCc--cceEEEEeCC--CCCcCccc-CHHHHHHHHHHHHHCCeEEEEhhhhhhcccCCCCCcChhhCCCccCceE
Confidence 88877752 2234445545 99999776 6777999999999999999999999766333321 11 11122222222
Q ss_pred ---eeccccC-CCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHH
Q psy8199 488 ---CLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK--DNILQRISQDMKKI 561 (965)
Q Consensus 488 ---t~sK~l~-gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~--~~~~~~~~~~~~~l 561 (965)
+|||.++ .| +++|++++++++++.+.. .....+++.++..++++.++|....+ +++.++++++.+++
T Consensus 226 ~~~S~SK~~g~~G-lRiG~~~~~~~~~~~l~~------~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l 298 (387)
T PRK08912 226 KIGSAGKIFSLTG-WKVGFVCAAPPLLRVLAK------AHQFLTFTTPPNLQAAVAYGLGKPDDYFEGMRADLARSRDRL 298 (387)
T ss_pred EEeechhhccCcC-ceeEEEecCHHHHHHHHH------HHhhccccCChHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 6899887 56 899999999999888765 12223466677777777777742111 23455666666677
Q ss_pred HHHHHcccCCCceeeeeceeE-EEEEEEeecCccchhhHHHHHHHHHH-HcCcEEeec---------CCEEEEeCCcccC
Q psy8199 562 TKALTSLITHPKIINFRQKGM-IWAFDVIIEDPEQIETFSKKFFVAAL-KNELLLRPI---------GNTVYLMPPYILN 630 (965)
Q Consensus 562 ~~~L~~l~~~~~i~~v~g~G~-~~~i~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~---------~~~lR~~p~~~~t 630 (965)
.+.|++. ++....+.|. ++++.+. ..+. ......+++.+. ++||.+.|+ .+++|++ +...
T Consensus 299 ~~~L~~~----g~~~~~~~g~~~l~~~l~-~~~~--~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~iRl~--~~~~ 369 (387)
T PRK08912 299 AAGLRRI----GFPVLPSQGTYFLTVDLA-PLGL--AEDDVAFCRRLVEEAGVAAIPVSAFYEEDPVTSVVRFC--FAKR 369 (387)
T ss_pred HHHHHhC----CCcccCCCcceEEEeccc-ccCC--CCCHHHHHHHHHhcCCEEEecchhhCCCCCCCCEEEEE--EeCC
Confidence 7766654 3444455555 4445553 1000 011345667765 679999873 2689999 5567
Q ss_pred HHHHHHHHHhhhcc
Q psy8199 631 KNEIQHMTSAIFQT 644 (965)
Q Consensus 631 ~~~i~~~~~~l~~~ 644 (965)
++.+++.++++.+.
T Consensus 370 ~~~l~~~l~rl~~~ 383 (387)
T PRK08912 370 DATLDEAVERLAAA 383 (387)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888887654
|
|
| >PLN03026 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.8e-18 Score=193.57 Aligned_cols=318 Identities=12% Similarity=0.105 Sum_probs=205.3
Q ss_pred CCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHH
Q psy8199 252 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVAL 331 (965)
Q Consensus 252 dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al 331 (965)
.+..++|+..|. +++| .+|.+.+++.+. .... .|+.....+|.+.+++.++.+.++|++++|+++++..++
T Consensus 50 ~~~~~i~l~~n~--~p~~-~~~~v~~a~~~~-~~~~-----~Yp~~~~~~lr~~ia~~~~~~~~~I~~t~Ga~~~i~~~~ 120 (380)
T PLN03026 50 KPEDIVKLDANE--NPYG-PPPEVLEALGNM-KFPY-----VYPDPESRRLRAALAEDSGLESENILVGCGADELIDLLM 120 (380)
T ss_pred CccceEEccCCC--CCCC-CCHHHHHHHHhh-Hhhc-----cCCCCCHHHHHHHHHHHhCcChhhEEEcCCHHHHHHHHH
Confidence 356788887763 4555 568888887642 2211 233334567888888888777789999999999999988
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHH
Q psy8199 332 KMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDL 411 (965)
Q Consensus 332 ~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l 411 (965)
+.... ++++|++.+++|..+...+...+. .+..+|..... . .|+++|
T Consensus 121 ~~~~~--------~gd~Vlv~~P~y~~y~~~~~~~g~-------------~~~~v~~~~~~-~-----------~d~~~l 167 (380)
T PLN03026 121 RCVLD--------PGDKIIDCPPTFGMYVFDAAVNGA-------------EVIKVPRTPDF-S-----------LDVPRI 167 (380)
T ss_pred HHhcC--------CCCEEEEcCCChHHHHHHHHHcCC-------------EEEEeecCCCC-C-----------cCHHHH
Confidence 76532 567899999999765322222111 22333332111 1 367888
Q ss_pred HHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCccee---e
Q psy8199 412 EILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL---C 488 (965)
Q Consensus 412 e~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDiv---t 488 (965)
++++.. .++.+|++.. ++|++|.+.+ .+++.++++.. +++|+||+|..|...+... ....-.++++ +
T Consensus 168 ~~~~~~--~~~~~v~l~~-P~NPTG~~~~----~~~l~~l~~~~-~~vi~DeaY~~~~~~~~~~--~~~~~~~~viv~~S 237 (380)
T PLN03026 168 VEAVET--HKPKLLFLTS-PNNPDGSIIS----DDDLLKILELP-ILVVLDEAYIEFSTQESRM--KWVKKYDNLIVLRT 237 (380)
T ss_pred HHHHhc--cCCcEEEEeC-CCCCCCCCCC----HHHHHHHHhcC-CEEEEECcchhhcCCcchH--HHHHhCCCEEEEec
Confidence 887732 2345555555 5999999886 45556666544 8999999998774322211 1111224444 6
Q ss_pred eccccC-CCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHHH
Q psy8199 489 LSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN-KDNILQRISQDMKKITKALT 566 (965)
Q Consensus 489 ~sK~l~-gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~-~~~~~~~~~~~~~~l~~~L~ 566 (965)
|||.++ .| +++|++++++++++.+.. ....++.+.+++.++.++|+..+ -++..+.+++..+++.+.|+
T Consensus 238 fSK~~glaG-lRiGy~~~~~~~i~~l~~--------~~~~~~~~~~~q~aa~~aL~~~~~~~~~~~~~~~~r~~l~~~L~ 308 (380)
T PLN03026 238 FSKRAGLAG-LRVGYGAFPLSIIEYLWR--------AKQPYNVSVAAEVAACAALSNPKYLEDVKNALVEERERLFGLLK 308 (380)
T ss_pred chHhhcCcc-ccceeeecCHHHHHHHHH--------hcCCCCCCHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899886 45 899999999999988765 11245678888999888884211 02245556666677777776
Q ss_pred cccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec-----CCEEEEeCCcccCHHHHHHHHHhh
Q psy8199 567 SLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-----GNTVYLMPPYILNKNEIQHMTSAI 641 (965)
Q Consensus 567 ~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-----~~~lR~~p~~~~t~~~i~~~~~~l 641 (965)
++ +.+...++.|.|+.+.+. +. ....++.+.|.++||.++++ .+++||+ ..+.++.+.+.+++
T Consensus 309 ~~---~~~~~~p~~~~f~~~~~~--~~----~~~~~~~~~l~~~gI~v~~~~~~~~~~~lRis---~~~~~~~~~l~~al 376 (380)
T PLN03026 309 EV---PFLEPYPSDANFILCRVT--SG----RDAKKLKEDLAKMGVMVRHYNSKELKGYIRVS---VGKPEHTDALMEAL 376 (380)
T ss_pred HC---CCCeECCCCCeEEEEECC--CC----CCHHHHHHHHHHCCeEEEECCCCCCCCEEEEe---cCCHHHHHHHHHHH
Confidence 54 333334556777777653 11 11346788888999999874 2689999 33677788887776
Q ss_pred h
Q psy8199 642 F 642 (965)
Q Consensus 642 ~ 642 (965)
+
T Consensus 377 ~ 377 (380)
T PLN03026 377 K 377 (380)
T ss_pred H
Confidence 5
|
|
| >KOG0257|consensus | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.8e-19 Score=185.00 Aligned_cols=275 Identities=14% Similarity=0.181 Sum_probs=191.1
Q ss_pred CHHHHHHHHHHHhhc--cccccCCCCcHHHHHHHHHHHhhcCC---CCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCc
Q psy8199 272 NSYINKALKNQLNKL--EHVMLSNLTHKPVIKLSEKLSSLTQY---KLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNK 346 (965)
Q Consensus 272 ~p~v~~av~~~~~~~--~~~~~~~~~~~~~~~la~~l~~~~~~---~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~ 346 (965)
+.-|.+|+++.+... ..|+...+..++...|++++++.++. ..++|+.|+|+.+|+..++..... .+
T Consensus 46 P~fv~ea~~~~~~~~~~~qYt~~~G~p~L~~aL~k~~se~~~~~~~~~~eVlVT~GA~~ai~~~~~~l~~--------~G 117 (420)
T KOG0257|consen 46 PKFVTEAAKNAAKEPSTNQYTRGYGLPQLRKALAKAYSEFYGGLLDPDDEVLVTAGANEAISSALLGLLN--------PG 117 (420)
T ss_pred cHHHHHHHHHHhccchhccccccCCchHHHHHHHHHHHHHhccccCCcccEEEecCchHHHHHHHHHHcC--------CC
Confidence 344788888888763 34555667778888999999996653 345899999999999999887764 68
Q ss_pred eEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEE
Q psy8199 347 KKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAII 426 (965)
Q Consensus 347 ~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii 426 (965)
+.||+++|.|..|......+++.+.+. |.... ++.....+-..|.++||.++. +++.+|+
T Consensus 118 DeVii~eP~fd~Y~~~~~maG~tpv~v-------------~~~~~----~g~~~s~~~~~D~~~le~~~t---~kTk~Ii 177 (420)
T KOG0257|consen 118 DEVIVFEPFFDCYIPQVVMAGGTPVFV-------------PLKPK----EGNVSSSDWTLDPEELESKIT---EKTKAII 177 (420)
T ss_pred CEEEEecCcchhhhhHHhhcCCcceee-------------ccccc----cccccCccccCChHHHHhhcc---CCccEEE
Confidence 999999999999988777777644322 21100 000000111257899999986 3455555
Q ss_pred EccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccc-cccccc-cCCCccee---eecc--ccCCCccc
Q psy8199 427 IEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK-FFACEH-AEIWPDFL---CLSK--GITGGYLP 499 (965)
Q Consensus 427 ~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~-~~~~~~-~~~~pDiv---t~sK--~l~gG~~p 499 (965)
++. ++|++|.+. +.+.|++|.++|++||+++|+||||..+-..|. +..+.. -|+.-..+ ++|| +++| |+
T Consensus 178 ~nt-PhNPtGkvf-sReeLe~ia~l~~k~~~lvisDevYe~~v~d~~~h~r~aslPgm~ertitvgS~gKtf~~TG--Wr 253 (420)
T KOG0257|consen 178 LNT-PHNPTGKVF-SREELERIAELCKKHGLLVISDEVYEWLVYDGNKHIRIASLPGMYERTITVGSFGKTFGVTG--WR 253 (420)
T ss_pred EeC-CCCCcCccc-CHHHHHHHHHHHHHCCEEEEEhhHhHHHhhCCCcceeeecCCchhheEEEeccccceeeeee--ee
Confidence 555 599999876 788899999999999999999999997766664 222222 23332333 5789 4556 99
Q ss_pred ceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh---c-------ccHHHHHHHHHHHHHHHHHccc
Q psy8199 500 LSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN---K-------DNILQRISQDMKKITKALTSLI 569 (965)
Q Consensus 500 ig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~---~-------~~~~~~~~~~~~~l~~~L~~l~ 569 (965)
+|++++++.++..... ......|..+...+.|..+++..-. + .++...++++++.|.+.|.++
T Consensus 254 lGW~igp~~L~~~~~~------vh~~~~~~~~Tp~q~A~a~a~~~~~~~~~p~~~y~~~~~~~~y~~krdil~k~L~~l- 326 (420)
T KOG0257|consen 254 LGWAIGPKHLYSALFP------VHQNFVFTCPTPIQEASAAAFALELACLQPGGSYFITELVKEYKEKRDILAKALEEL- 326 (420)
T ss_pred eeeeechHHhhhhHHH------HhhccccccCcHHHHHHHHHHhhhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 9999998888876654 3344556666666666666664322 1 125667788888999999887
Q ss_pred CCCceeeeeceeEEEEEEE
Q psy8199 570 THPKIINFRQKGMIWAFDV 588 (965)
Q Consensus 570 ~~~~i~~v~g~G~~~~i~~ 588 (965)
++...-++|.++.+..
T Consensus 327 ---g~~v~~p~gayyl~ad 342 (420)
T KOG0257|consen 327 ---GLKVTGPEGAYYLWAD 342 (420)
T ss_pred ---CCccccCCCceEEEEe
Confidence 5556667787766654
|
|
| >PRK15481 transcriptional regulatory protein PtsJ; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.5e-18 Score=196.66 Aligned_cols=328 Identities=13% Similarity=0.020 Sum_probs=208.4
Q ss_pred cccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHH
Q psy8199 254 KRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKM 333 (965)
Q Consensus 254 ~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~ 333 (965)
...+|+.+|.. ..-..|.+.+++.+.......|....+..+....+++.+....+ ..++|++|+|+++|+..+++.
T Consensus 85 ~~~i~L~~g~p---~~~~~p~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~-~~~~Iiit~G~~~al~~~~~~ 160 (431)
T PRK15481 85 TPLHDLAGGNP---DPQRLPDLSRYFARLSRTPRLYGDAPVSPELHAWAARWLRDDCP-VAFEIDLTSGAIDAIERLLCA 160 (431)
T ss_pred chhhhhhcCCC---ChhHhHHHHHHHHHhhhhhhhcCCcCCCHHHHHHHHHHHhhccC-CcCeEEEecCcHHHHHHHHHH
Confidence 34667665522 22124667777776554433343333444555555555544332 245899999999999999987
Q ss_pred HHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHH
Q psy8199 334 SFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEI 413 (965)
Q Consensus 334 a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~ 413 (965)
... +++.|++.+++|.++...+...+. .+..+|.... + .|+++|++
T Consensus 161 l~~--------pgd~Vlv~~P~y~~~~~~~~~~g~-------------~~~~v~~~~~-g------------~~~~~l~~ 206 (431)
T PRK15481 161 HLL--------PGDSVAVEDPCFLSSINMLRYAGF-------------SASPVSVDAE-G------------MQPEKLER 206 (431)
T ss_pred hCC--------CCCEEEEeCCCcHHHHHHHHHcCC-------------eEEeeccCCC-C------------CCHHHHHH
Confidence 643 568899999999888443333322 2333333211 1 25788888
Q ss_pred HHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhc-CCeEEEeccccCCCcccccccccccCCCccee---ee
Q psy8199 414 LLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNY-NIHLIADEIAVGCGRTGKFFACEHAEIWPDFL---CL 489 (965)
Q Consensus 414 ~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~-g~llI~DEv~tg~gr~G~~~~~~~~~~~pDiv---t~ 489 (965)
+++. ++.++++.|-.+|++|.+. +.+.+++|.++|++| ++++|.||+|..|...+...... ...+.++ +|
T Consensus 207 ~~~~---~~k~i~~~p~p~NPTG~~~-s~~~~~~l~~la~~~~~~~ii~De~Y~~~~~~~~~~~~~--~~~~~vi~~~Sf 280 (431)
T PRK15481 207 ALAQ---GARAVILTPRAHNPTGCSL-SARRAAALRNLLARYPQVLVIIDDHFALLSSSPYHSVIP--QTTQRWALIRSV 280 (431)
T ss_pred HHhc---CCCEEEECCCCCCCCCccC-CHHHHHHHHHHHHhcCCceEEecCchhhhccCCCCCCCc--CCCCCEEEEeee
Confidence 8853 3444444322499999877 778899999999999 99999999998774322111111 1224444 68
Q ss_pred ccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc----ccHHHHHHHHHHHHHHHH
Q psy8199 490 SKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK----DNILQRISQDMKKITKAL 565 (965)
Q Consensus 490 sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~----~~~~~~~~~~~~~l~~~L 565 (965)
||.++.| +++|++++++++++.+.. .....+++.+.+++.++.++|+.-.- ....+.++++.+.+.+.|
T Consensus 281 SK~~~~G-lRiG~~i~~~~~~~~~~~------~~~~~~~~~s~~~q~a~~~~l~~~~~~~~l~~~~~~~~~~r~~~~~~L 353 (431)
T PRK15481 281 SKALGPD-LRLAFVASDSATSARLRL------RLNSGTQWVSHLLQDLVYACLTDPEYQARLAQARLFYAQRRQKLARAL 353 (431)
T ss_pred ccccCCC-ceeEEEeCCHHHHHHHHH------HHhccccCCCHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999866 899999999999888754 11223455788999999888852110 123444555555566655
Q ss_pred HcccCCCceee-eeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecC--------CEEEEeCCcccCHHHHHH
Q psy8199 566 TSLITHPKIIN-FRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG--------NTVYLMPPYILNKNEIQH 636 (965)
Q Consensus 566 ~~l~~~~~i~~-v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~--------~~lR~~p~~~~t~~~i~~ 636 (965)
++. ++.. .+..|+++++.+. + ....+.+.|.++||.+.|+. +++|++... .+++++++
T Consensus 354 ~~~----~~~~~~p~gg~f~~~~l~--~------~~~~~~~~l~~~gV~v~pg~~f~~~~~~~~iRis~~~-~~~~~i~~ 420 (431)
T PRK15481 354 QQY----GIAIPSPGDGLNLWLPLD--T------DSQATALTLAKSGWLVREGEAFGVSAPSHGLRITLST-LNDAEINR 420 (431)
T ss_pred HHc----CCccccCCCeEEEEEECC--C------CHHHHHHHHHHCCcEEecCCccccCCCCCeEEEEcCC-CChHHHHH
Confidence 543 3333 3445666666653 1 13457778889999998731 479999542 56889999
Q ss_pred HHHhhhccc
Q psy8199 637 MTSAIFQTF 645 (965)
Q Consensus 637 ~~~~l~~~~ 645 (965)
+++++.+++
T Consensus 421 ~~~~l~~~~ 429 (431)
T PRK15481 421 LAADLHQAL 429 (431)
T ss_pred HHHHHHHHh
Confidence 998886653
|
|
| >PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.5e-19 Score=200.26 Aligned_cols=191 Identities=14% Similarity=0.184 Sum_probs=155.8
Q ss_pred EeEeeccCCCCCCCCCCCCCCcCCCCcccccCCCHHHHHHHHHHHHHCCCCEEEEeeccCCCCccc---HHHHHHHHHHH
Q psy8199 683 VLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRD---LDNIENMICEV 759 (965)
Q Consensus 683 ~~i~~~s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~---~~~~~~~~~~i 759 (965)
..+.+ ++|||++|.||..+...+ +++.+++++|+++++.+.+.|++++.|++........+ ...+.++++.+
T Consensus 149 ~~i~i-~rGC~~~CsfC~~p~~~g----~~Rsr~~e~Iv~Ei~~l~~~G~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l 223 (439)
T PRK14328 149 AFVTI-MYGCNNFCTYCIVPYVRG----RERSRKPEDIIAEIKELVSEGYKEVTLLGQNVNSYGKDLEEKIDFADLLRRV 223 (439)
T ss_pred EEEEH-HhCcCCCCCCCCcccccC----CcccCCHHHHHHHHHHHHHCCCcEEEEeccccCcCCcCCCCCcCHHHHHHHH
Confidence 45677 999999999999875432 23567999999999999999999999988754321111 12356666666
Q ss_pred Hh-cC---cEe-EEecCCCCHHHHHHHHHhC--CCeEeccCCC-CHHHHhcccCCCCHHHHHHHHHHHHHc--CCceeee
Q psy8199 760 KK-IG---LET-CLTLGMLNENQAYRLKKVG--LDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNV--GINICCG 829 (965)
Q Consensus 760 ~~-~~---~~i-~~~~~~~~~e~l~~Lk~aG--~~~i~i~~es-~~~~~~~i~~~~~~~~~~~~i~~~~~~--Gi~v~~~ 829 (965)
.+ .+ +.+ +.++..++++.++.|+++| +.++++++|| ++++++.|+++++.+++.++++.++++ ++.+.++
T Consensus 224 ~~~~~~~~ir~~~~~P~~i~~ell~~l~~~~~~~~~l~iglQSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~~~i~i~~d 303 (439)
T PRK14328 224 NEIDGLERIRFMTSHPKDLSDDLIEAIADCDKVCEHIHLPVQSGSNRILKKMNRHYTREYYLELVEKIKSNIPDVAITTD 303 (439)
T ss_pred HhcCCCcEEEEecCChhhcCHHHHHHHHhCCCcCceeeeCCCcCCHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCEEEEE
Confidence 54 22 333 2356678999999999996 9999999999 999999999999999999999999997 7788899
Q ss_pred EEEec-CCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCCCC-CCCHH
Q psy8199 830 GIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSS-ILDPL 880 (965)
Q Consensus 830 ~i~Gl-~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~~~-~~~~~ 880 (965)
+|+|+ |||.+|+.++++++.+++ ++.+.++.|.|.||||++..+ ..+.+
T Consensus 304 ~IvG~PgET~ed~~~tl~~i~~l~--~~~~~~~~~sp~pGT~~~~~~~~v~~~ 354 (439)
T PRK14328 304 IIVGFPGETEEDFEETLDLVKEVR--YDSAFTFIYSKRKGTPAAKMEDQVPED 354 (439)
T ss_pred EEEECCCCCHHHHHHHHHHHHhcC--CCcccceEecCCCCChhhhCCCCCCHH
Confidence 99999 799999999999999999 899999999999999999753 34543
|
|
| >TIGR01574 miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.9e-19 Score=199.58 Aligned_cols=193 Identities=13% Similarity=0.154 Sum_probs=158.2
Q ss_pred eEeEeeccCCCCCCCCCCCCCCcCCCCcccccCCCHHHHHHHHHHHHHCCCCEEEEeeccCCCC-cc----cHHHHHHHH
Q psy8199 682 AVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELK-DR----DLDNIENMI 756 (965)
Q Consensus 682 ~~~i~~~s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~-~~----~~~~~~~~~ 756 (965)
.+.+.+ ++||+++|.||..+...+ +++.+++++|+++++.+.+.|++++.|++...... .. ....+.+++
T Consensus 146 ~~~v~i-~rGC~~~CsfC~~~~~~G----~~rsr~~e~I~~Ei~~l~~~g~~ei~l~~~~~~~y~g~d~~~~~~~l~~Ll 220 (438)
T TIGR01574 146 KSFINI-MIGCNKFCTYCIVPYTRG----DEISRPFDDILQEVQKLAEKGVREITLLGQNVNAYRGKDFEGKTMDFSDLL 220 (438)
T ss_pred eEEeeh-hcCCCCCCCCCCeeeecC----CCcccCHHHHHHHHHHHHHcCCeEEEEEecccCCccCCCCCCCcccHHHHH
Confidence 356777 899999999998765322 23557999999999999999999999987543221 11 123567777
Q ss_pred HHHHh-cCc-EeE---EecCCCCHHHHHHHHHhC--CCeEeccCCC-CHHHHhcccCCCCHHHHHHHHHHHHHc--CCce
Q psy8199 757 CEVKK-IGL-ETC---LTLGMLNENQAYRLKKVG--LDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNV--GINI 826 (965)
Q Consensus 757 ~~i~~-~~~-~i~---~~~~~~~~e~l~~Lk~aG--~~~i~i~~es-~~~~~~~i~~~~~~~~~~~~i~~~~~~--Gi~v 826 (965)
+.+.+ .++ .+. .++..++++.++.|+++| +.++++++|| ++++++.|+++++.+++.++++.++++ |+.+
T Consensus 221 ~~l~~~~~~~~ir~~~~~p~~l~~ell~~l~~~g~~~~~l~iglQSgsd~vLk~m~R~~t~~~~~~~v~~ir~~~~~i~i 300 (438)
T TIGR01574 221 RELSTIDGIERIRFTSSHPLDFDDDLIEVFANNPKLCKSMHLPVQSGSSEILKLMKRGYTREWYLNLVRKLRAACPNVSI 300 (438)
T ss_pred HHHHhcCCceEEEEecCCcccCCHHHHHHHHhCCCccCceeeCCCcCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeE
Confidence 77764 333 222 356678999999999999 9999999999 999999999999999999999999997 7888
Q ss_pred eeeEEEec-CCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCCCCC-CCHHH
Q psy8199 827 CCGGIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSI-LDPLE 881 (965)
Q Consensus 827 ~~~~i~Gl-~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~~~~-~~~~~ 881 (965)
.+++|+|+ |||.+|+.++++++.+++ ++.+.++.|.|.||||+++.+. .+.+.
T Consensus 301 ~~d~IvG~PgEt~ed~~~tl~~i~~~~--~~~~~~~~~sp~pGT~~~~~~~~v~~~~ 355 (438)
T TIGR01574 301 STDIIVGFPGETEEDFEETLDLLREVE--FDSAFSFIYSPRPGTPAADMPDQIPEEI 355 (438)
T ss_pred eeCEEEeCCCCCHHHHHHHHHHHHhcC--CCeeeeEEecCCCCCchhhCCCCCCHHH
Confidence 99999999 799999999999999999 8999999999999999998653 34433
|
Hits to this model span all major groups of bacteria and eukaryotes, but not archaea, which are known to lack this particular tRNA modification. The enzyme from Thermotoga maritima has been cloned, expressed, spectroscopically characterized and shown to complement the E. coli MiaB enzyme. |
| >TIGR03540 DapC_direct LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.1e-18 Score=191.00 Aligned_cols=333 Identities=12% Similarity=0.030 Sum_probs=210.0
Q ss_pred CCcccccccccchhccCCCCCHHHHHHHHHHHhhc--cccccCCCCcHHHHHHHHHHHhhcCC--CCC-eEEEcCChhHH
Q psy8199 252 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKL--EHVMLSNLTHKPVIKLSEKLSSLTQY--KLG-HCFYGSDGASA 326 (965)
Q Consensus 252 dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~--~~~~~~~~~~~~~~~la~~l~~~~~~--~~~-~v~~~~sGseA 326 (965)
.|...+|+.+|.. .++ .+|.+.+++.+.+... ..|....+..+.+..+++.+.+..+. ..+ +|++|+|+++|
T Consensus 27 ~~~~~~~l~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~vi~t~G~~~~ 103 (383)
T TIGR03540 27 EGVDVISLGIGDP--DLP-TPKHIVEALCKAAENPENHRYPSYEGMLAYRQAVADWYKRRFGVELDPETEVLSLIGSKEG 103 (383)
T ss_pred cCCCeEEeCCCCC--CCC-CCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCeEEECCCcHHH
Confidence 4667888887743 345 3788899998876542 22333334456677777777765443 334 68999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHH
Q psy8199 327 VEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARC 406 (965)
Q Consensus 327 ~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (965)
+..++++..+ +++.|++.+++|.++.......+. .+..+|.....+.. .
T Consensus 104 l~~~~~~~~~--------~gd~vlv~~P~y~~~~~~~~~~G~-------------~v~~v~~~~~~g~~----------~ 152 (383)
T TIGR03540 104 IAHIPLAFVN--------PGDIVLVPDPGYPVYRIGTLFAGG-------------EPYEMPLKEENGFL----------P 152 (383)
T ss_pred HHHHHHHhCC--------CCCEEEEeCCCCcchHHHHHhcCC-------------EEEEEecCcccCCc----------c
Confidence 9999887643 568899999999887443333222 23333332111100 2
Q ss_pred HHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccc-ccccccc-CCC-
Q psy8199 407 AIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK-FFACEHA-EIW- 483 (965)
Q Consensus 407 d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~-~~~~~~~-~~~- 483 (965)
|++++++.+.+ ++.+|++.. ++|++|.+. +.+.+++|.++|++||+++|+||+|..+...+. ......+ +..
T Consensus 153 d~~~l~~~~~~---~~~~v~i~~-P~NPtG~~~-~~~~~~~i~~~a~~~~~~ii~De~y~~l~~~~~~~~~~~~~~~~~~ 227 (383)
T TIGR03540 153 DFDAIPEDIAK---KAKLMFINY-PNNPTGAVA-PLKFFKELVEFAKEYNIIVCHDNAYSEITFDGYKAPSFLEVDGAKD 227 (383)
T ss_pred CHHHHHhhccc---cceEEEEeC-CCCCcCccC-CHHHHHHHHHHHHHcCEEEEEecchhhhccCCCCCcCcccCCCccc
Confidence 67778777642 345555553 489999776 788899999999999999999999987643332 1111111 111
Q ss_pred --cceeeeccccC-CCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc--ccHHHHHHHHH
Q psy8199 484 --PDFLCLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK--DNILQRISQDM 558 (965)
Q Consensus 484 --pDivt~sK~l~-gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~--~~~~~~~~~~~ 558 (965)
..+-+|||.++ .| +++|++++++++++.+.. +....+.+.+.+++.++.++|+...+ ++..+.++++.
T Consensus 228 ~~i~~~SfSK~~g~~G-lRiG~~i~~~~l~~~~~~------~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~ 300 (383)
T TIGR03540 228 VGIEFHSLSKTYNMTG-WRIGMAVGNADLIAGLGK------VKTNVDSGVFQAIQYAAIAALNGPQDVVKEIRKIYQRRR 300 (383)
T ss_pred CEEEEEecccccCCcc-ceeeEEeCCHHHHHHHHH------HHHhcccCCChHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 22347999886 45 899999999999887764 11122334466778887777753210 12344555556
Q ss_pred HHHHHHHHcccCCCceeeeeceeEE-EEEEEeecCccchhhHHHHHHHHHH-HcCcEEeec-------CCEEEEeCCccc
Q psy8199 559 KKITKALTSLITHPKIINFRQKGMI-WAFDVIIEDPEQIETFSKKFFVAAL-KNELLLRPI-------GNTVYLMPPYIL 629 (965)
Q Consensus 559 ~~l~~~L~~l~~~~~i~~v~g~G~~-~~i~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~-------~~~lR~~p~~~~ 629 (965)
+.+.+.|++. ++....+.|.+ +.+.+. +.. ....+.+.|+ ++||.+.|+ .+++||+ +..
T Consensus 301 ~~~~~~L~~~----~~~~~~~~~~~~~~~~l~--~~~----~~~~~~~~ll~~~gi~v~~g~~f~~~~~~~~Ris--~~~ 368 (383)
T TIGR03540 301 DLLLEALKKI----GIDVEKPKATFYVWVPVP--EGY----TSAEFAARLLEETGVVVTPGVGFGEYGEGYIRIS--LTV 368 (383)
T ss_pred HHHHHHHHhC----CCEecCCCcceEEEEECC--CCC----CHHHHHHHHHHHCCEEEecchhhCccCCCeEEEE--ecC
Confidence 6666666543 34444555554 555553 211 1345777764 689999874 2589999 456
Q ss_pred CHHHHHHHHHhhh
Q psy8199 630 NKNEIQHMTSAIF 642 (965)
Q Consensus 630 t~~~i~~~~~~l~ 642 (965)
+++.+.+.++++.
T Consensus 369 ~~~~l~~~l~~l~ 381 (383)
T TIGR03540 369 PDERLEEAVARIK 381 (383)
T ss_pred CHHHHHHHHHHHh
Confidence 7777887777654
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation. |
| >PRK06107 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.4e-18 Score=192.11 Aligned_cols=341 Identities=14% Similarity=0.087 Sum_probs=216.8
Q ss_pred CCcccccccccchhccCCCCCHHHHHHHHHHHhhc-cccccCCCCcHHHHHHHHHHHhhcCC--CCCeEEEcCChhHHHH
Q psy8199 252 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKL-EHVMLSNLTHKPVIKLSEKLSSLTQY--KLGHCFYGSDGASAVE 328 (965)
Q Consensus 252 dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~-~~~~~~~~~~~~~~~la~~l~~~~~~--~~~~v~~~~sGseA~~ 328 (965)
.|...+|+..|.+. ++ .+|.+.+++.+.++.. ..|....+..+.+..+++.+.+.++. ..+++++++|+++|+.
T Consensus 31 ~~~~~i~l~~g~p~--~~-~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~ 107 (402)
T PRK06107 31 AGRSIVDLTVGEPD--FD-TPDHIKQAAVAAIERGETKYTLVNGTPALRKAIIAKLERRNGLHYADNEITVGGGAKQAIF 107 (402)
T ss_pred ccCCEEEcCCCCCC--CC-CCHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHH
Confidence 35677888777542 33 3788999998887642 23444456667888899988877654 4578999999999999
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHH
Q psy8199 329 VALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAI 408 (965)
Q Consensus 329 ~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 408 (965)
.+++... .+++.|++.+++|.++........+ ....++.+...+.. .|+
T Consensus 108 ~~~~~~~--------~~gd~vl~~~p~y~~y~~~~~~~~~-------------~~~~v~~~~~~~~~----------~~~ 156 (402)
T PRK06107 108 LALMATL--------EAGDEVIIPAPYWVSYPDMVLANDG-------------TPVIVACPEEQGFK----------LTP 156 (402)
T ss_pred HHHHHhc--------CCCCEEEEecCCCcCHHHHHHHcCC-------------EEEEecCCcccCCC----------CCH
Confidence 9987543 2568899999988877433222211 12223322111100 256
Q ss_pred HHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhc-CCeEEEeccccCCCccccccc-cccc--CCCc
Q psy8199 409 FDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNY-NIHLIADEIAVGCGRTGKFFA-CEHA--EIWP 484 (965)
Q Consensus 409 ~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~-g~llI~DEv~tg~gr~G~~~~-~~~~--~~~p 484 (965)
+++++++.+ ...+++++.| +|++|.+. +.+.+++|.++|++| |+++|+||+|..+...+..+. .... +...
T Consensus 157 ~~l~~~~~~--~~~~v~l~~p--~NPtG~~~-s~~~~~~l~~~a~~~~~~~iI~De~y~~l~~~~~~~~~~~~~~~~~~~ 231 (402)
T PRK06107 157 EALEAAITP--RTRWLILNAP--SNPTGAVY-SRAELRALADVLLRHPHVLVLTDDIYDHIRFDDEPTPHLLAAAPELRD 231 (402)
T ss_pred HHHHhhcCc--CceEEEEECC--CCCCCcCc-CHHHHHHHHHHHHHcCCeEEEEehhccccccCCCCCCCHHHhCcCccC
Confidence 778877742 2334445545 88999765 777899999999998 999999999987644342211 1111 2223
Q ss_pred cee---eeccccC-CCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhccc----HHHHHHH
Q psy8199 485 DFL---CLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDN----ILQRISQ 556 (965)
Q Consensus 485 Div---t~sK~l~-gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~----~~~~~~~ 556 (965)
.++ +|||.++ .| +++|++++++++++.+.. +....+.+.+.++++++..+|+. .+. ..+.+++
T Consensus 232 ~vi~~~S~SK~~~~pG-lRiG~~~~~~~~~~~~~~------~~~~~~~~~s~~~q~~~~~~l~~--~~~~~~~~~~~~~~ 302 (402)
T PRK06107 232 RVLVTNGVSKTYAMTG-WRIGYAAGPADLIAAINK------LQSQSSSCPSSISQAAAAAALNG--DQSFVTESVAVYKQ 302 (402)
T ss_pred CEEEEeccchhhcCcc-cceeeeecCHHHHHHHHH------HHHhcccCCChHHHHHHHHHhcC--ChHHHHHHHHHHHH
Confidence 455 4699886 45 899999999999988765 22334566788999999888842 122 2344455
Q ss_pred HHHHHHHHHHcccCCCceeeeeceeEEE-EEEEeec-C---ccch-hhHHHHHHH-HHHHcCcEEeecC-----CEEEEe
Q psy8199 557 DMKKITKALTSLITHPKIINFRQKGMIW-AFDVIIE-D---PEQI-ETFSKKFFV-AALKNELLLRPIG-----NTVYLM 624 (965)
Q Consensus 557 ~~~~l~~~L~~l~~~~~i~~v~g~G~~~-~i~~~~~-~---~~~~-~~~~~~~~~-~l~~~Gi~~~~~~-----~~lR~~ 624 (965)
+.+.+.+.|++ ++++....+.|.|+ ++.+..- + .... ......+.. .+.++||.+.|+. +++|++
T Consensus 303 ~~~~~~~~L~~---~~g~~~~~p~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~Fg~~~~iRis 379 (402)
T PRK06107 303 RRDYALALLNA---IPGLSCLVPDGAFYLYVNCAGLIGKTTPEGKVLETDQDVVLYLLDSAGVAVVQGTAYGLSPYFRLS 379 (402)
T ss_pred HHHHHHHHHhc---CCCCcccCCCcceEEeeecccccccccccccCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEE
Confidence 55555555544 34555455666654 4444100 0 0000 001234544 4467899999852 689999
Q ss_pred CCcccCHHHHHHHHHhhhccc
Q psy8199 625 PPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 625 p~~~~t~~~i~~~~~~l~~~~ 645 (965)
+..+++++++.++++.+.+
T Consensus 380 --~~~~~e~l~~~l~~l~~~l 398 (402)
T PRK06107 380 --IATSLETLEEACARIERAV 398 (402)
T ss_pred --eCCCHHHHHHHHHHHHHHH
Confidence 5578999999998887544
|
|
| >PRK09276 LL-diaminopimelate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.6e-18 Score=191.33 Aligned_cols=334 Identities=10% Similarity=0.015 Sum_probs=207.5
Q ss_pred CCcccccccccchhccCCCCCHHHHHHHHHHHhhc--cccccCCCCcHHHHHHHHHHHhhcCC--CCC-eEEEcCChhHH
Q psy8199 252 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKL--EHVMLSNLTHKPVIKLSEKLSSLTQY--KLG-HCFYGSDGASA 326 (965)
Q Consensus 252 dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~--~~~~~~~~~~~~~~~la~~l~~~~~~--~~~-~v~~~~sGseA 326 (965)
.|..++|+..|.. .++ .+|.+.+++.+.++.. ..|....+..+.+..+++.+.+..+. +.+ .+++|+|+++|
T Consensus 29 ~~~~~i~l~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~ii~t~G~~~~ 105 (385)
T PRK09276 29 RGVDVISLGIGDP--DLP-TPDHIIEAMCKAVEDPENHQYPSYEGMLEFRKAVADWYKRRFGVELDPETEVISLIGSKEG 105 (385)
T ss_pred cCCCEEEecCCCC--CCC-CCHHHHHHHHHHHhCCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHHH
Confidence 3566788887743 333 4778999998877542 22332334456667777777655442 344 58899999999
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHH
Q psy8199 327 VEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARC 406 (965)
Q Consensus 327 ~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (965)
+..+++.... +++.|++.+++|.++...+...+. .+..+|.....+.. .
T Consensus 106 i~~~~~~~~~--------~gd~Vl~~~P~y~~~~~~~~~~g~-------------~~~~v~~~~~~g~~----------~ 154 (385)
T PRK09276 106 IAHIPLAFVN--------PGDVVLVPDPGYPVYKIGTIFAGG-------------EPYFMPLKEENGFL----------P 154 (385)
T ss_pred HHHHHHHhCC--------CCCEEEEcCCCCcChHHHHHHcCC-------------EEEEEecCCCCCCc----------C
Confidence 9999887643 568899999999887433322221 22333332111100 2
Q ss_pred HHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccc-cc-cccC---
Q psy8199 407 AIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFF-AC-EHAE--- 481 (965)
Q Consensus 407 d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~-~~-~~~~--- 481 (965)
|++++++.+. .++.+|++.+ ++|++|.+. +.+.+++|.++|++||+++|+||+|..|...+... .. ...+
T Consensus 155 d~~~l~~~~~---~~~~~v~l~~-p~NPtG~~~-~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~ 229 (385)
T PRK09276 155 DLDAIPEDVA---KKAKLMFINY-PNNPTGAVA-DLEFFEEVVDFAKKYDIIVCHDAAYSEIAYDGYKPPSFLEVPGAKD 229 (385)
T ss_pred CHHHHHHhcc---ccceEEEEeC-CCCCCCCCC-CHHHHHHHHHHHHHCCcEEEEecchhheecCCCCCCChhccCCCcC
Confidence 5677776664 2345555554 489999876 77779999999999999999999998764333211 11 1111
Q ss_pred CCcceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc--ccHHHHHHHHHH
Q psy8199 482 IWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK--DNILQRISQDMK 559 (965)
Q Consensus 482 ~~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~--~~~~~~~~~~~~ 559 (965)
....+-+|||.++..++++|++++++++++.+..- ....+.+.+++.+.++.++|+.... +...+.++++.+
T Consensus 230 ~~i~~~S~SK~~g~~GlRiG~~i~~~~l~~~~~~~------~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~ 303 (385)
T PRK09276 230 VGIEFHSLSKTYNMTGWRIGFAVGNADLIAGLGKV------KSNVDSGVFQAIQEAGIAALNGPQEVVEELRKIYQERRD 303 (385)
T ss_pred CEEEEecchhhcCCcchhheeeeCCHHHHHHHHHH------HhhccCCCCHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH
Confidence 11233479998853228999999999998887651 1112233456777777777742111 223444555566
Q ss_pred HHHHHHHcccCCCceeeeeceeEE-EEEEEeecCccchhhHHHHHHHHHH-HcCcEEeec-------CCEEEEeCCcccC
Q psy8199 560 KITKALTSLITHPKIINFRQKGMI-WAFDVIIEDPEQIETFSKKFFVAAL-KNELLLRPI-------GNTVYLMPPYILN 630 (965)
Q Consensus 560 ~l~~~L~~l~~~~~i~~v~g~G~~-~~i~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~-------~~~lR~~p~~~~t 630 (965)
++.+.|++. ++....+.|.+ +.+.+. +.. ....+.+.|+ ++||.+.|+ .+++|++ +..+
T Consensus 304 ~l~~~L~~~----~~~~~~~~~~~~~~v~~~--~~~----~~~~l~~~ll~~~gi~v~~g~~f~~~~~~~~Ris--~~~~ 371 (385)
T PRK09276 304 ILVEGLRKL----GLEVEPPKATFYVWAPVP--KGY----TSAEFATLLLDKAGVVVTPGNGFGEYGEGYFRIA--LTVP 371 (385)
T ss_pred HHHHHHHhC----CCcccCCCcceEEEEECC--CCC----CHHHHHHHHHHhCCEEECCchhhCCCCCCeEEEE--eCCC
Confidence 666666553 34434455554 555543 211 1345667765 579999884 2589999 4567
Q ss_pred HHHHHHHHHhhh
Q psy8199 631 KNEIQHMTSAIF 642 (965)
Q Consensus 631 ~~~i~~~~~~l~ 642 (965)
++++.++++++.
T Consensus 372 ~~~l~~~l~~l~ 383 (385)
T PRK09276 372 DERIEEAVERIK 383 (385)
T ss_pred HHHHHHHHHHHh
Confidence 788888877764
|
|
| >cd00609 AAT_like Aspartate aminotransferase family | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.9e-18 Score=191.71 Aligned_cols=323 Identities=14% Similarity=0.090 Sum_probs=208.8
Q ss_pred hccCCCCCHHHHHHHHHHHhh--ccccccCCCCcHHHHHHHHHHHhhcC--CCCCeEEEcCChhHHHHHHHHHHHHHHHh
Q psy8199 265 VNLFGHSNSYINKALKNQLNK--LEHVMLSNLTHKPVIKLSEKLSSLTQ--YKLGHCFYGSDGASAVEVALKMSFHYWYN 340 (965)
Q Consensus 265 ~~~lGh~~p~v~~av~~~~~~--~~~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~~~sGseA~~~Al~~a~~~~~~ 340 (965)
..++++ +|.+++++.+.-.. ...+....+..+....+++.+....+ .+.+.+++++||++|+..+++.+..
T Consensus 7 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~t~a~~~~~~~~~~---- 81 (350)
T cd00609 7 EPDFPP-PPEVLEALAAAALRAGLLGYYPDPGLPELREAIAEWLGRRGGVDVPPEEIVVTNGAQEALSLLLRALLN---- 81 (350)
T ss_pred CCCCCC-CHHHHHHHHHHhhccCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHhCC----
Confidence 445554 45555555541111 11122233445555666666665542 2366899999999999999987743
Q ss_pred cCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCC
Q psy8199 341 KGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHN 420 (965)
Q Consensus 341 ~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~ 420 (965)
.+++|++.+++|++........+ .....++........ .+.+.++... .+
T Consensus 82 ----~g~~vl~~~~~~~~~~~~~~~~~-------------~~~~~i~~~~~~~~~----------~~~~~~~~~~---~~ 131 (350)
T cd00609 82 ----PGDEVLVPDPTYPGYEAAARLAG-------------AEVVPVPLDEEGGFL----------LDLELLEAAK---TP 131 (350)
T ss_pred ----CCCEEEEcCCCchhHHHHHHHCC-------------CEEEEEecccccCCc----------cCHHHHHhhc---Cc
Confidence 46789999988877633222211 233344443211110 0013333332 45
Q ss_pred cEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccccccc-ccccC-CCccee--eeccccC-C
Q psy8199 421 KIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFA-CEHAE-IWPDFL--CLSKGIT-G 495 (965)
Q Consensus 421 ~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~-~~~~~-~~pDiv--t~sK~l~-g 495 (965)
++++|++++ +++++|.+. +.+.+++|.++|+++|+++|+||++++++..+.... ....+ ...|++ +++|.++ +
T Consensus 132 ~~~~v~i~~-~~~~tG~~~-~~~~l~~l~~~~~~~~~~~ivD~a~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~~~ 209 (350)
T cd00609 132 KTKLLYLNN-PNNPTGAVL-SEEELEELAELAKKHGILIISDEAYAELVYDGEPPPALALLDAYERVIVLRSFSKTFGLP 209 (350)
T ss_pred cceEEEEEC-CCCCCCccc-CHHHHHHHHHHHHhCCeEEEEecchhhceeCCcccccccCcCccCcEEEEeecccccCCc
Confidence 788999999 899999865 678899999999999999999999998765554321 11111 122443 6899998 5
Q ss_pred CcccceeeeecH-HHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHH--hcccHHHHHHHHHHHHHHHHHcccCCC
Q psy8199 496 GYLPLSLVMTTD-KIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIF--NKDNILQRISQDMKKITKALTSLITHP 572 (965)
Q Consensus 496 G~~pig~v~~~~-~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~--~~~~~~~~~~~~~~~l~~~L~~l~~~~ 572 (965)
| .++|++++++ ++.+.+.. .....+++.++.++.++.++|+.. ..+...++++++.+++.+.|++..
T Consensus 210 g-~~~G~i~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~--- 279 (350)
T cd00609 210 G-LRIGYLIAPPEELLERLKK------LLPYTTSGPSTLSQAAAAAALDDGEEHLEELRERYRRRRDALLEALKELG--- 279 (350)
T ss_pred c-cceEEEecCHHHHHHHHHH------HHHhcccCCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHhcC---
Confidence 6 6999999998 78888765 223346677888888888888765 224456777778888888887652
Q ss_pred cee-eeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec-------CCEEEEeCCcccCHHHHHHHHHhhh
Q psy8199 573 KII-NFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-------GNTVYLMPPYILNKNEIQHMTSAIF 642 (965)
Q Consensus 573 ~i~-~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-------~~~lR~~p~~~~t~~~i~~~~~~l~ 642 (965)
... .....|.+..+.+. .. .....+.+.|.+.||.+.+. +.++|++++.. .++++.++++++
T Consensus 280 ~~~~~~~~~g~~~~~~~~--~~----~~~~~~~~~l~~~gi~i~~~~~~~~~~~~~iRi~~~~~--~~~i~~~~~al~ 349 (350)
T cd00609 280 PLVVVKPSGGFFLWLDLP--EG----DDEEFLERLLLEAGVVVRPGSAFGEGGEGFVRLSFATP--EEELEEALERLA 349 (350)
T ss_pred CccccCCCccEEEEEecC--CC----ChHHHHHHHHHhCCEEEecccccccCCCCeEEEEeeCC--HHHHHHHHHHhh
Confidence 111 34455777777664 11 12334567777889998864 36899998877 899999998875
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi |
| >TIGR01578 MiaB-like-B MiaB-like tRNA modifying enzyme, archaeal-type | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.4e-18 Score=196.54 Aligned_cols=192 Identities=15% Similarity=0.255 Sum_probs=151.2
Q ss_pred eEeEeeccCCCCCCCCCCCCCCcCCCCcccccCCCHHHHHHHHHHHHHCCCCEEEEeeccCCCC----cccHHHHHHHHH
Q psy8199 682 AVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELK----DRDLDNIENMIC 757 (965)
Q Consensus 682 ~~~i~~~s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~----~~~~~~~~~~~~ 757 (965)
...+.+ ++|||++|+||..+...+ +++.+++|+|+++++.+.+.|++++.|++...... ...+..+++.+.
T Consensus 134 ~~~i~i-srGC~~~CsfC~ip~~~G----~~rsr~~e~Vl~Ei~~l~~~G~~ei~l~g~d~~~yg~d~~~~l~~Ll~~l~ 208 (420)
T TIGR01578 134 IEIIPI-NQGCLGNCSYCITKHARG----KLASYPPEKIVEKARQLVAEGCKEIWITSQDTGAYGRDIGSRLPELLRLIT 208 (420)
T ss_pred EEEEEE-ccCCCCCCCCCccccCCC----CcccCCHHHHHHHHHHHHHCCCeEEEEEeeccccccCCCCcCHHHHHHHHH
Confidence 366777 999999999998765322 35668999999999999999999999987543211 112344444443
Q ss_pred HHHh-cCcEeEE-ecC---CCCHHHHHHHHHhC-CCeEeccCCC-CHHHHhcccCCCCHHHHHHHHHHHHHc--CCceee
Q psy8199 758 EVKK-IGLETCL-TLG---MLNENQAYRLKKVG-LDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNV--GINICC 828 (965)
Q Consensus 758 ~i~~-~~~~i~~-~~~---~~~~e~l~~Lk~aG-~~~i~i~~es-~~~~~~~i~~~~~~~~~~~~i~~~~~~--Gi~v~~ 828 (965)
.+.. ..+.+.. ++. .++++.++.++..+ +.++++++|| ++++++.|+++++.+++.++++.+++. |+.+.+
T Consensus 209 ~i~~~~~ir~~~~~p~~~~~~~~~l~~~~~~~~~~~~l~iglQSgsd~iL~~m~R~~~~~~~~~~i~~i~~~~~~i~i~~ 288 (420)
T TIGR01578 209 EIPGEFRLRVGMMNPKNVLEILDELANVYQHEKVYKFLHLPVQSGSDSVLKEMKREYTVSDFEDIVDKFRERFPDLTLST 288 (420)
T ss_pred hCCCCcEEEEcCCCCCcccccCHHHHHHHhcccccCceEeCCccCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEe
Confidence 3322 1233322 221 34677788777655 6899999999 999999999999999999999999998 899999
Q ss_pred eEEEec-CCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCCCCCCCHH
Q psy8199 829 GGIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPL 880 (965)
Q Consensus 829 ~~i~Gl-~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~~~~~~~~ 880 (965)
++|+|+ |||.+++.++++++.+++ ++.+.++.|+|.||||++..+..+.+
T Consensus 289 ~~IvG~PgET~ed~~~t~~~~~~~~--~~~i~~~~~~p~pGT~~~~~~~v~~~ 339 (420)
T TIGR01578 289 DIIVGFPTETDDDFEETMELLRKYR--PEKINITKFSPRPGTPAAKMKRIPTN 339 (420)
T ss_pred eEEEeCCCCCHHHHHHHHHHHHHhC--CCEEEEEEeeCCCCCcccCCCCCCHH
Confidence 999999 799999999999999999 89999999999999999987665554
|
This clade is a member of a subfamily (TIGR00089) and spans the archaea and eukaryotes. The only archaeal miaB-like genes are in this clade, while eukaryotes have sequences described by this model as well as ones falling within the scope of the MiaB equivalog model. |
| >PRK08636 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1e-17 Score=191.03 Aligned_cols=344 Identities=12% Similarity=0.045 Sum_probs=211.3
Q ss_pred CCcccccccccchhccCCCCCHHHHHHHHHHHhh--ccccccCCCCcHHHHHHHHHHHhhcC--CCCC-eEEEcCChhHH
Q psy8199 252 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNK--LEHVMLSNLTHKPVIKLSEKLSSLTQ--YKLG-HCFYGSDGASA 326 (965)
Q Consensus 252 dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~--~~~~~~~~~~~~~~~~la~~l~~~~~--~~~~-~v~~~~sGseA 326 (965)
.|..++|+..|. +.+..++.+.+++.+.+.. ...|....+..+.+..+++.+.+..+ ...+ +|++|+|+++|
T Consensus 31 ~~~~~~~l~~g~---p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lR~~ia~~l~~~~~~~~~~~~~I~it~G~~~a 107 (403)
T PRK08636 31 AGEDIIDFSMGN---PDGPTPQHIIDKLCESAQKPKTHGYSVSKGIYKLRLAICNWYKRKYNVDLDPETEVVATMGSKEG 107 (403)
T ss_pred cCCCEEEcCCcC---CCCCCCHHHHHHHHHHhcCCccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEECCChHHH
Confidence 466789987763 3343467788887776543 22344344556677888888877654 3455 79999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHH
Q psy8199 327 VEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARC 406 (965)
Q Consensus 327 ~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (965)
+..++++... +++.|++.+++|.++.......+. .+..+|.+.... ++.+.+ .
T Consensus 108 l~~~~~~l~~--------~gd~Vlv~~P~y~~~~~~~~~~g~-------------~~~~v~~~~~~~--~~~d~~----~ 160 (403)
T PRK08636 108 YVHLVQAITN--------PGDVAIVPDPAYPIHSQAFILAGG-------------NVHKMPLEYNED--FELDED----Q 160 (403)
T ss_pred HHHHHHHhCC--------CCCEEEEcCCCCcchHHHHHhcCC-------------EEEEEecccccc--CccChh----h
Confidence 9999987643 678999999999887433333222 233333321000 001110 0
Q ss_pred HHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccccc-ccccccCCCcc
Q psy8199 407 AIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKF-FACEHAEIWPD 485 (965)
Q Consensus 407 d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~-~~~~~~~~~pD 485 (965)
-.+.++++++++..++.++++.. ++|++|.+. +.+-+++|.++|++|++++|.||+|..|-..+.. .....+.-.+|
T Consensus 161 l~~~l~~~~~~~~~~~~~i~~~~-P~NPTG~~~-s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~~~~~~~~~~~ 238 (403)
T PRK08636 161 FFENLEKALRESSPKPKYVVVNF-PHNPTTATV-EKSFYERLVALAKKERFYIISDIAYADITFDGYKTPSILEVEGAKD 238 (403)
T ss_pred hhhHHHHHHhhccCCceEEEEeC-CCCCCCccC-CHHHHHHHHHHHHHcCcEEEEeccchhhccCCCCCCChhcCCCccc
Confidence 12356666665434455555553 489999876 6777999999999999999999999877433321 11111111223
Q ss_pred e-e---eeccccC-CCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccH----HHHHHH
Q psy8199 486 F-L---CLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNI----LQRISQ 556 (965)
Q Consensus 486 i-v---t~sK~l~-gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~----~~~~~~ 556 (965)
. + +|||.++ .| +++|++++++++++.+.. ......++.+.+++.++..+++- .+.+ .+..++
T Consensus 239 ~~i~~~S~SK~~~~~G-lRiG~iv~~~~li~~~~~------~~~~~~~~~~~~~q~~~~~~~~~--~~~~~~~~~~~~~~ 309 (403)
T PRK08636 239 VAVESYTLSKSYNMAG-WRVGFVVGNKKLVGALKK------IKSWLDYGMFTPIQVAATIALDG--DQSCVEEIRETYRK 309 (403)
T ss_pred cEEEEEecccccCCcc-ceeeeeeCCHHHHHHHHH------HHHHhcccCChHHHHHHHHHHhC--cHHHHHHHHHHHHH
Confidence 2 2 5899985 45 899999999999888765 11222345566677776666541 1223 333444
Q ss_pred HHHHHHHHHHcccCCCceeeeec-eeEEEEEEEeecCccchhhHHHHHHHHH-HHcCcEEeec-------CCEEEEeCCc
Q psy8199 557 DMKKITKALTSLITHPKIINFRQ-KGMIWAFDVIIEDPEQIETFSKKFFVAA-LKNELLLRPI-------GNTVYLMPPY 627 (965)
Q Consensus 557 ~~~~l~~~L~~l~~~~~i~~v~g-~G~~~~i~~~~~~~~~~~~~~~~~~~~l-~~~Gi~~~~~-------~~~lR~~p~~ 627 (965)
+.+.+.+.|+.. ++....+ .|+++++.+. +.... .....+...+ .++||.+.|+ .+++|++ +
T Consensus 310 ~~~~l~~~L~~~----~~~~~~p~~g~~~~~~l~--~~~~~-~~~~~l~~~ll~~~gV~v~pg~~f~~~~~~~iRi~--~ 380 (403)
T PRK08636 310 RRDVLIESFANA----GWELQKPRASMFVWAKIP--EPARH-LGSLEFSKQLLTEAKVAVSPGIGFGEYGDEYVRIA--L 380 (403)
T ss_pred HHHHHHHHHHHC----CCcccCCCcceEEEEECC--CccCC-CCHHHHHHHHHHhCCEEEecchhhCcCCCCeEEEE--e
Confidence 445555555442 3443344 4666666653 11000 0134566554 4789999874 2689999 5
Q ss_pred ccCHHHHHHHHHhhhccc
Q psy8199 628 ILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 628 ~~t~~~i~~~~~~l~~~~ 645 (965)
..+++.+++.++++...+
T Consensus 381 ~~~~~~l~~~~~rl~~~l 398 (403)
T PRK08636 381 IENENRIRQAARNIKKFL 398 (403)
T ss_pred cCCHHHHHHHHHHHHHHH
Confidence 578888999888886544
|
|
| >PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.4e-18 Score=196.05 Aligned_cols=191 Identities=12% Similarity=0.153 Sum_probs=157.1
Q ss_pred eEeEeeccCCCCCCCCCCCCCCcCCCCcccccCCCHHHHHHHHHHHHHCCCCEEEEeeccCCCCccc---HHHHHHHHHH
Q psy8199 682 AVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRD---LDNIENMICE 758 (965)
Q Consensus 682 ~~~i~~~s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~---~~~~~~~~~~ 758 (965)
.+.+.+ ++|||++|.||..+...+ +++.+++++|+++++.+.+.|+++|.+++........+ .+.+.++++.
T Consensus 125 ~a~i~i-~rGC~~~CsFC~ip~~rG----~~rsrs~e~Iv~Ei~~l~~~G~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~ 199 (418)
T PRK14336 125 SANVTI-MQGCDNFCTYCVVPYRRG----REKSRSIAEIGCEVAELVRRGSREVVLLGQNVDSYGHDLPEKPCLADLLSA 199 (418)
T ss_pred EEEEEe-ccCCCCCCccCCccccCC----CCccCCHHHHHHHHHHHHHCCCeEEEEEecCccccccCCCCcccHHHHHHH
Confidence 355677 899999999998765322 34668999999999999999999999988754321111 2457777777
Q ss_pred HHhc-C-cEeE---EecCCCCHHHHHHHHHh--CCCeEeccCCC-CHHHHhcccCCCCHHHHHHHHHHHHHc--CCceee
Q psy8199 759 VKKI-G-LETC---LTLGMLNENQAYRLKKV--GLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNV--GINICC 828 (965)
Q Consensus 759 i~~~-~-~~i~---~~~~~~~~e~l~~Lk~a--G~~~i~i~~es-~~~~~~~i~~~~~~~~~~~~i~~~~~~--Gi~v~~ 828 (965)
+.+. + ..+. .++..++++.++.|++. ++.++++++|| ++++++.|+++++.+++.++++.++++ |+.+.+
T Consensus 200 l~~~~~~~~ir~~~~~p~~i~~ell~~l~~~~~~~~~l~lglQSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~pgi~i~~ 279 (418)
T PRK14336 200 LHDIPGLLRIRFLTSHPKDISQKLIDAMAHLPKVCRSLSLPVQAGDDTILAAMRRGYTNQQYRELVERLKTAMPDISLQT 279 (418)
T ss_pred HHhcCCccEEEEeccChhhcCHHHHHHHHhcCccCCceecCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHhhCCCCEEEE
Confidence 7652 2 2332 24566789999999995 59999999999 999999999999999999999999998 999999
Q ss_pred eEEEec-CCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCC-C-CCCCH
Q psy8199 829 GGIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYG-S-SILDP 879 (965)
Q Consensus 829 ~~i~Gl-~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~-~-~~~~~ 879 (965)
++|+|+ |||.+++.++++++.+++ ++.+.++.|.|.||||++. . ...+.
T Consensus 280 d~IvGfPGET~edf~~tl~fi~~~~--~~~~~v~~ysp~pGT~a~~~~~~~v~~ 331 (418)
T PRK14336 280 DLIVGFPSETEEQFNQSYKLMADIG--YDAIHVAAYSPRPQTVAARDMADDVPV 331 (418)
T ss_pred EEEEECCCCCHHHHHHHHHHHHhcC--CCEEEeeecCCCCCChhHhhCccCCCH
Confidence 999999 799999999999999999 8999999999999999984 4 33444
|
|
| >PRK05942 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.7e-18 Score=191.14 Aligned_cols=335 Identities=11% Similarity=0.010 Sum_probs=208.2
Q ss_pred CCcccccccccchhccCCCCCHHHHHHHHHHHhhc--cccccCCCCcHHHHHHHHHHHhhcC--CCCC-eEEEcCChhHH
Q psy8199 252 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKL--EHVMLSNLTHKPVIKLSEKLSSLTQ--YKLG-HCFYGSDGASA 326 (965)
Q Consensus 252 dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~--~~~~~~~~~~~~~~~la~~l~~~~~--~~~~-~v~~~~sGseA 326 (965)
.|+.++|+..|. +.+..++++.+++.+.+... ..|....+..+.+..+++.+.+..+ .+.+ .+++|+|+++|
T Consensus 33 ~g~~~i~l~~g~---p~~~~p~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~i~vt~G~~~a 109 (394)
T PRK05942 33 QGLDLIDLGMGN---PDGAAPQPVIEAAIAALADPQNHGYPPFEGTASFRQAITDWYHRRYGVELDPDSEALPLLGSKEG 109 (394)
T ss_pred cCCCeEEcCCCC---CCCCCCHHHHHHHHHHHhCCCCccCCCCCCCHHHHHHHHHHHHHHHCCCcCCCCeEEEccChHHH
Confidence 366789997763 34445677888887776432 2233333445667777777766544 2455 58899999999
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHH
Q psy8199 327 VEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARC 406 (965)
Q Consensus 327 ~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (965)
+..++.... .++++|++.+++|.++.......+. .+..+|....... ..
T Consensus 110 l~~~~~~~~--------~~gd~Vlv~~P~y~~~~~~~~~~g~-------------~~~~v~~~~~~~~----------~~ 158 (394)
T PRK05942 110 LTHLALAYV--------NPGDVVLVPSPAYPAHFRGPLIAGA-------------QIYPIILKPENDW----------LI 158 (394)
T ss_pred HHHHHHHhC--------CCCCEEEEcCCCCcchHHHHHHcCC-------------EEEEeecCCccCC----------cc
Confidence 999887663 3578899999999886433222211 2223332111000 03
Q ss_pred HHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccc-ccccccc----C
Q psy8199 407 AIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK-FFACEHA----E 481 (965)
Q Consensus 407 d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~-~~~~~~~----~ 481 (965)
|++++++.+. +++.+|++.. ++|++|.+. +.+.+++|.++|++||+++|+||+|..|...+. ..+.... +
T Consensus 159 d~~~l~~~~~---~~~k~i~l~~-P~NPtG~~~-s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~ 233 (394)
T PRK05942 159 DLSSIPEEVA---QQAKILYFNY-PSNPTTATA-PREFFEEIVAFARKYEIMLVHDLCYAELAFDGYQPTSLLEIPGAKD 233 (394)
T ss_pred CHHHHHHhcc---ccceEEEEcC-CCCCCCCcC-CHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCCChhhCCCccc
Confidence 6778877774 2455555553 399999776 777899999999999999999999987643332 1111111 1
Q ss_pred CCcceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc--ccHHHHHHHHHH
Q psy8199 482 IWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK--DNILQRISQDMK 559 (965)
Q Consensus 482 ~~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~--~~~~~~~~~~~~ 559 (965)
....+-+|||.++..++++|++++++++++.+.. ......++.+.+++.++.++|+...+ +...++++++.+
T Consensus 234 ~~i~~~SfSK~~~~~GlRiG~i~~~~~l~~~l~~------~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~ 307 (394)
T PRK05942 234 IGVEFHTLSKTYNMAGWRVGFVVGNRHIIQGLRT------LKTNLDYGIFSALQKAAETALQLPDSYLQQVQERYRTRRD 307 (394)
T ss_pred cEEEEecchhccCChhhheeeeecCHHHHHHHHH------HHhhcccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 1122347899885323899999999999988865 11223455677888888888863221 234555666666
Q ss_pred HHHHHHHcccCCCceeeeeceeE-EEEEEEeecCccchhhHHHHHHH-HHHHcCcEEeec-------CCEEEEeCCcccC
Q psy8199 560 KITKALTSLITHPKIINFRQKGM-IWAFDVIIEDPEQIETFSKKFFV-AALKNELLLRPI-------GNTVYLMPPYILN 630 (965)
Q Consensus 560 ~l~~~L~~l~~~~~i~~v~g~G~-~~~i~~~~~~~~~~~~~~~~~~~-~l~~~Gi~~~~~-------~~~lR~~p~~~~t 630 (965)
++.+.|++. ++....+.|. ++++.+. .... ..++.. .+.++||.+.|+ .+++|++.+ .+
T Consensus 308 ~~~~~L~~~----~~~~~~~~~~~f~~~~~~--~~~~----~~~~~~~~l~~~gV~v~~g~~f~~~~~~~iRis~~--~~ 375 (394)
T PRK05942 308 FLIQGLGEL----GWNIPPTKATMYLWVPCP--VGMG----STDFALNVLQKTGVVVTPGNAFGEGGEGYVRISLI--AD 375 (394)
T ss_pred HHHHHHHHC----CCeecCCCeeeEEEEECC--CCCC----HHHHHHHHHHHCCEEEeCChhhCcCCCCeEEEEec--CC
Confidence 666666543 3444455565 5555553 1111 223444 455789999763 268999953 45
Q ss_pred HHHHHHHHHhhhc
Q psy8199 631 KNEIQHMTSAIFQ 643 (965)
Q Consensus 631 ~~~i~~~~~~l~~ 643 (965)
.+.+.+.++++.+
T Consensus 376 ~~~l~~~l~~l~~ 388 (394)
T PRK05942 376 CDRLGEALDRLKQ 388 (394)
T ss_pred HHHHHHHHHHHHH
Confidence 5666666666543
|
|
| >PRK14807 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.7e-18 Score=188.90 Aligned_cols=315 Identities=12% Similarity=0.137 Sum_probs=204.7
Q ss_pred cccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHH
Q psy8199 256 YLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSF 335 (965)
Q Consensus 256 ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~ 335 (965)
.+|+..|. +.++ .+|.+++++.+.+.... ...++.+...++.+.++++++...++|++++|+++|+..+++...
T Consensus 24 ~~~l~~~~--~~~~-~p~~~~~a~~~~~~~~~---~~~y~~~~~~~lr~~ia~~~~~~~~~i~it~G~~~~l~~~~~~l~ 97 (351)
T PRK14807 24 KYKMDANE--TPFE-LPEEVIKNIQEIVKSSQ---VNIYPDPTAEKLREELARYCSVVPTNIFVGNGSDEIIHLIMLAFI 97 (351)
T ss_pred eeEccCCC--CCCC-CCHHHHHHHHHHhhcCc---ccCCCCccHHHHHHHHHHHhCCCcccEEEecCHHHHHHHHHHHhc
Confidence 35665553 2444 57889999988775321 122333445778888888887777899999999999998888653
Q ss_pred HHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHH
Q psy8199 336 HYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILL 415 (965)
Q Consensus 336 ~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l 415 (965)
.++++|++.+++|.++.......+. .+..++.... +. .|++++++++
T Consensus 98 --------~~gd~Vlv~~p~y~~~~~~~~~~g~-------------~~~~v~~~~~-~~-----------~d~~~l~~~~ 144 (351)
T PRK14807 98 --------NKGDVVIYPHPSFAMYSVYSKIAGA-------------VEIPVKLKED-YT-----------YDVGSFIKVI 144 (351)
T ss_pred --------CCCCEEEEeCCChHHHHHHHHHcCC-------------eEEEeecCCC-CC-----------CCHHHHHHHh
Confidence 2568899999999876332222221 2233333211 11 2577888887
Q ss_pred HhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCccee---eeccc
Q psy8199 416 KKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL---CLSKG 492 (965)
Q Consensus 416 ~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDiv---t~sK~ 492 (965)
.. .++.+|++.. ++|++|.+.+ .+++.++|++++.++|+||+|.+|. +.... ......++++ +|||.
T Consensus 145 ~~--~~~k~v~l~~-p~NPtG~~~~----~~~l~~l~~~~~~~~ivDe~y~~~~--~~~~~-~~~~~~~~vi~~~S~SK~ 214 (351)
T PRK14807 145 EK--YQPKLVFLCN-PNNPTGSVIE----REDIIKIIEKSRGIVVVDEAYFEFY--GNTIV-DVINEFENLIVLRTLSKA 214 (351)
T ss_pred hc--cCCCEEEEeC-CCCCCCCCCC----HHHHHHHHHhCCCEEEEeCcchhhc--ccchH-HHhhhCCCEEEEecchHh
Confidence 53 2345555445 5999998886 5667888888888999999998762 32111 1111123444 68998
Q ss_pred cC-CCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcccCC
Q psy8199 493 IT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITH 571 (965)
Q Consensus 493 l~-gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~~~ 571 (965)
++ .| +++|++++++++++.+..- ...++.+++++.++.+.|+.-.-++..+.++++.+++.+.|++ .
T Consensus 215 ~~~~G-lRiG~~v~~~~~~~~~~~~--------~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~r~~l~~~l~~---~ 282 (351)
T PRK14807 215 FGLAG-LRVGYAVANENILKYLNLV--------KSPYNINSLSQVIALKVLRTGVLKERVNYILNERERLIKELSK---I 282 (351)
T ss_pred cccch-hceeeeecCHHHHHHHHHc--------cCCCCcCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh---C
Confidence 86 55 8999999999999888651 1234567888888888885311122334555566666666654 3
Q ss_pred CceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecC------CEEEEeCCcccCHHHHHHHHHhhhc
Q psy8199 572 PKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG------NTVYLMPPYILNKNEIQHMTSAIFQ 643 (965)
Q Consensus 572 ~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~------~~lR~~p~~~~t~~~i~~~~~~l~~ 643 (965)
+++...++.|.++.+.+. + ...+.+.|.++||.+++.. +++|++ ..+.++.+.+++.+.+
T Consensus 283 ~g~~~~~~~~~~~~i~~~--~-------~~~~~~~l~~~gV~v~~~~~~~~~~~~iRis---~~~~~~~~~l~~~l~~ 348 (351)
T PRK14807 283 PGIKVYPSKTNFILVKFK--D-------ADYVYQGLLERGILVRDFSKVEGLEGALRIT---VSSCEANDYLINGLKE 348 (351)
T ss_pred CCcEECcCCccEEEEEcC--C-------HHHHHHHHHHCCEEEEECCCCCCCCCeEEEE---cCCHHHHHHHHHHHHH
Confidence 455444556777666553 1 3467788889999997642 589999 3456777788777654
|
|
| >cd06502 TA_like Low-specificity threonine aldolase (TA) | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.4e-18 Score=191.06 Aligned_cols=321 Identities=17% Similarity=0.127 Sum_probs=203.8
Q ss_pred cccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHH
Q psy8199 258 DAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHY 337 (965)
Q Consensus 258 D~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~ 337 (965)
||.|. +++| .+|.+.+++.+.+... . ..++.+...++++.++++++ .+.+++++||++|+..+++....
T Consensus 1 ~~~~~---~~~~-~~~~v~~a~~~~~~~~---~-~~~~~~~~~~l~~~~a~~~g--~~~~~~~~~gt~a~~~~~~~l~~- 69 (338)
T cd06502 1 DFRSD---TVTG-PTPEMLEAMAAANVGD---D-VYGEDPTTAKLEARAAELFG--KEAALFVPSGTAANQLALAAHTQ- 69 (338)
T ss_pred Ccccc---cCCC-CCHHHHHHHHhcccCC---c-ccCCCHHHHHHHHHHHHHhC--CCeEEEecCchHHHHHHHHHhcC-
Confidence 45554 5677 7899999998765322 1 22456778899999999986 56888999999999999886632
Q ss_pred HHhcCCCCceEEEEEcCCccCCccccc---cccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHH
Q psy8199 338 WYNKGFLNKKKFICLQNSYHGETLGAL---AVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEIL 414 (965)
Q Consensus 338 ~~~~g~~~~~~vi~~~~~yHg~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~ 414 (965)
+++.|++.+++| .+..... ...| .....++... .. .|+++|+++
T Consensus 70 -------~gd~v~~~~~~~-~~~~~~~~~~~~~g------------~~~~~v~~~~--~~-----------~d~~~l~~~ 116 (338)
T cd06502 70 -------PGGSVICHETAH-IYTDEAGAPEFLSG------------VKLLPVPGEN--GK-----------LTPEDLEAA 116 (338)
T ss_pred -------CCCeEEEecCcc-eeeecCCcHHHHcC------------ceEEeecCCC--Cc-----------CCHHHHHHH
Confidence 456777666554 3321110 0111 1223333221 11 377889888
Q ss_pred HHhCC----CcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCC--cccccccccccCCCccee-
Q psy8199 415 LKKNH----NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCG--RTGKFFACEHAEIWPDFL- 487 (965)
Q Consensus 415 l~~~~----~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~g--r~G~~~~~~~~~~~pDiv- 487 (965)
+.+.. .++.+|+++. ++|+ |.+. +.+.+++|.++|++||+++|+||+|..+. ..|. ....+...+|++
T Consensus 117 i~~~~~~~~~~~~~v~l~~-p~n~-g~~~-~~~~l~~i~~~~~~~~~~livDea~~~~~~~~~~~--~~~~~~~~~d~~~ 191 (338)
T cd06502 117 IRPRDDIHFPPPSLVSLEN-TTEG-GTVY-PLDELKAISALAKENGLPLHLDGARLANAAAALGV--ALKTYKSGVDSVS 191 (338)
T ss_pred hhccCCCcCCcceEEEEEe-ecCC-cccc-CHHHHHHHHHHHHHcCCeEeechHHHHHHHHhcCC--CHHHHHhcCCEEE
Confidence 86421 2456666665 5666 4444 77789999999999999999999874211 1121 111222346666
Q ss_pred -eeccccCCCccccee-eeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Q psy8199 488 -CLSKGITGGYLPLSL-VMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKAL 565 (965)
Q Consensus 488 -t~sK~l~gG~~pig~-v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L 565 (965)
+++|.++. |.|+ +++++++++.+... ...++++++.+++++++++++|+.-......+++.++.+++.+.|
T Consensus 192 ~s~sK~~~~---~~g~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~l~~~L 264 (338)
T cd06502 192 FCLSKGGGA---PVGAVVVGNRDFIARARRR----RKQAGGGMRQSGFLAAAGLAALENDLWLRRLRHDHEMARRLAEAL 264 (338)
T ss_pred EeccccCCC---ccceEEECCHHHHHHHHHH----HHHhCCChhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHH
Confidence 57787754 3354 45788888877541 012345666777888888888853111234577777888888888
Q ss_pred HcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHH---HcCcEEeecC-CEEEEeCCcccCHHHHHHHHHhh
Q psy8199 566 TSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAAL---KNELLLRPIG-NTVYLMPPYILNKNEIQHMTSAI 641 (965)
Q Consensus 566 ~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~---~~Gi~~~~~~-~~lR~~p~~~~t~~~i~~~~~~l 641 (965)
+++. +....+.+.++.+.+. .. ......+.+.+. ++|+++.+.+ +.+||+|++.+++++++++++++
T Consensus 265 ~~~~----~~~~~~~~~~~~v~~~-~~----~~~~~~l~~~l~~~~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l 335 (338)
T cd06502 265 EELG----GLESEVQTNIVLLDPV-EA----NAVFVELSKEAIERRGEGVLFYAWGEGGVRFVTHWDTTEEDVDELLSAL 335 (338)
T ss_pred HhcC----CCcccccCCeEEEecC-Cc----cHHHHHHHHHHHHhhhCCEEEEecCCCeEEEEeecCCCHHHHHHHHHHH
Confidence 7651 1223345666666543 11 122223434443 7899998764 89999999999999999999887
Q ss_pred hc
Q psy8199 642 FQ 643 (965)
Q Consensus 642 ~~ 643 (965)
..
T Consensus 336 ~~ 337 (338)
T cd06502 336 KA 337 (338)
T ss_pred hc
Confidence 53
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway. |
| >PLN02721 threonine aldolase | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.6e-18 Score=189.02 Aligned_cols=332 Identities=14% Similarity=0.139 Sum_probs=204.5
Q ss_pred ccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHH
Q psy8199 255 RYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMS 334 (965)
Q Consensus 255 ~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a 334 (965)
+++|+.++.+. ...|.+.+|+.+. ..... ..+.++...+|.+.++++++ .+.+++++||++++..++.+.
T Consensus 6 ~~~~~~~~~~~----~~~~~~~~a~~~~--~~~~~--~~~~~~~~~~l~~~la~~~~--~~~~~~~~~Gs~a~~~~l~~~ 75 (353)
T PLN02721 6 RVVDLRSDTVT----KPTDAMRAAMANA--EVDDD--VLGYDPTALRLEEEMAKIFG--KEAALFVPSGTMGNLISVLVH 75 (353)
T ss_pred hhhhhhccccc----CCCHHHHHHHHhc--cCCCc--ccCCCHHHHHHHHHHHHHhC--CceeEEecCccHHHHHHHHHH
Confidence 67888888665 2578999998764 11111 22345667899999999995 456889999999998887765
Q ss_pred HHHHHhcCCCCceEEEEEcCCccC-Cccc-cccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHH
Q psy8199 335 FHYWYNKGFLNKKKFICLQNSYHG-ETLG-ALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLE 412 (965)
Q Consensus 335 ~~~~~~~g~~~~~~vi~~~~~yHg-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le 412 (965)
.. .++++|++.+++|.. +..+ ..... ......+|.... +. .|+++++
T Consensus 76 ~~-------~~gd~Vl~~~~~~~~~~~~~~~~~~~------------g~~~~~v~~~~~-~~-----------~d~~~l~ 124 (353)
T PLN02721 76 CD-------VRGSEVILGDNSHIHLYENGGISTLG------------GVHPRTVKNNED-GT-----------MDLDAIE 124 (353)
T ss_pred cc-------CCCCeEEEcCccceehhcccchhhhc------------CceeEecCCCcC-CC-----------cCHHHHH
Confidence 32 256789998888632 2110 01111 112233332111 11 3788999
Q ss_pred HHHHhC----CCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccccc-ccccccCCCcc--
Q psy8199 413 ILLKKN----HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKF-FACEHAEIWPD-- 485 (965)
Q Consensus 413 ~~l~~~----~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~-~~~~~~~~~pD-- 485 (965)
+++++. .+++++|++++ ++++.|...++.+.+++|.++|++||+++|+||+|. ++-.... ..........|
T Consensus 125 ~~i~~~~~~~~~~~~~v~l~~-~~~np~G~~~~~~~l~~l~~l~~~~g~~livD~a~~-~~~~~~~~~~~~~~~~~~d~~ 202 (353)
T PLN02721 125 AAIRPKGDDHFPTTRLICLEN-THANCGGRCLSVEYTDKVGELAKRHGLKLHIDGARI-FNASVALGVPVHRLVKAADSV 202 (353)
T ss_pred HHHHhccCCCCCcceEEEEec-cccccCCccccHHHHHHHHHHHHHcCCEEEEEchhh-hcchhhhCCCHHHHhhhCCEE
Confidence 888642 13577888888 666655555688889999999999999999999985 4321100 00010111234
Q ss_pred eeeeccccCCCccccee-eeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Q psy8199 486 FLCLSKGITGGYLPLSL-VMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKA 564 (965)
Q Consensus 486 ivt~sK~l~gG~~pig~-v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~ 564 (965)
++++||++++ |+|+ +++++++++.+..- ... .+++....+..+++++.+++...+ ..++..++.+++.+.
T Consensus 203 ~~s~sK~l~~---~~G~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~l~~~ 273 (353)
T PLN02721 203 SVCLSKGLGA---PVGSVIVGSKSFIRKAKRL---RKT-LGGGMRQVGVLAAAALVALQENVP--KLEDDHKKAKLLAEG 273 (353)
T ss_pred EEecccccCC---ceeeEEecCHHHHHhHHHH---HHh-cCCCeehhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 3478999874 5675 66788887765430 000 111111112333444455543211 234445667777777
Q ss_pred HHcccCCCcee--eeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecC-CEEEEeCCcccCHHHHHHHHHhh
Q psy8199 565 LTSLITHPKII--NFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG-NTVYLMPPYILNKNEIQHMTSAI 641 (965)
Q Consensus 565 L~~l~~~~~i~--~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~-~~lR~~p~~~~t~~~i~~~~~~l 641 (965)
|+++ +++. ...+.+.++.+.+. +.. ......+++.|.++||.+++.+ +.+|+++++.+++++++++++++
T Consensus 274 L~~~---~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~L~~~gi~v~~~~~~~lR~~~~~~~~~~~i~~~~~~l 346 (353)
T PLN02721 274 LNQI---KGLRVNVAAVETNIVYFDIT--DGS--RITAEKLCKSLEEHGVLLMPGNSSRIRVVTHHQISDSDVQYTLSCF 346 (353)
T ss_pred HHhC---CCcEEecCCccceEEEEEcc--CCc--cccHHHHHHHHHhCCcEEecCCCceEEEEecCcCCHHHHHHHHHHH
Confidence 7655 3332 12344667777664 110 0124568889999999999876 78999999899999999999998
Q ss_pred hccc
Q psy8199 642 FQTF 645 (965)
Q Consensus 642 ~~~~ 645 (965)
.+.+
T Consensus 347 ~~~~ 350 (353)
T PLN02721 347 QQAA 350 (353)
T ss_pred HHHh
Confidence 7643
|
|
| >PRK07550 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.1e-17 Score=190.16 Aligned_cols=337 Identities=11% Similarity=0.017 Sum_probs=212.7
Q ss_pred CCcccccccccchhccCCCCCHHHHHHHHHHHhhc--cccccCCCCcHHHHHHHHHHHhhcC--CCCCeEEEcCChhHHH
Q psy8199 252 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKL--EHVMLSNLTHKPVIKLSEKLSSLTQ--YKLGHCFYGSDGASAV 327 (965)
Q Consensus 252 dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~--~~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~~~sGseA~ 327 (965)
.|+.++|+.++... +. .++.+.+++.+.+... ..|....+..+.+..+++.+.+..+ ...+++++++|+++|+
T Consensus 27 ~~~~~i~l~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al 103 (386)
T PRK07550 27 ADGPLIDLSQAVPG--YP-PPPELLRALAEAAADPAAHLYGPVEGLPELREAYAAHYSRLYGAAISPEQVHITSGCNQAF 103 (386)
T ss_pred cCCCeEEeCCCCCC--CC-CCHHHHHHHHHHHhCcCCcCCCCCCCCHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHH
Confidence 35678999887642 22 3677888888766432 1232233556667788888876654 3457999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHH
Q psy8199 328 EVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCA 407 (965)
Q Consensus 328 ~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 407 (965)
..++++... ++++|++.+++|.++....... ...+..++.....+.. .|
T Consensus 104 ~~~~~~l~~--------~gd~Vlv~~p~y~~~~~~~~~~-------------g~~~~~v~~~~~~~~~----------~~ 152 (386)
T PRK07550 104 WAAMVTLAG--------AGDEVILPLPWYFNHKMWLDML-------------GIRPVYLPCDEGPGLL----------PD 152 (386)
T ss_pred HHHHHHhcC--------CCCEEEEcCCCCcchHHHHHhc-------------CCEEEEEecCCCcCCC----------CC
Confidence 988887643 5678999999997763221111 1123333332111110 26
Q ss_pred HHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccc-c-ccccccCCCcc
Q psy8199 408 IFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK-F-FACEHAEIWPD 485 (965)
Q Consensus 408 ~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~-~-~~~~~~~~~pD 485 (965)
++++++++++ ...+.+++.| +|++|.+. +.+.+++|.++|++||+++|+||+|..|...+. . ..+...+...+
T Consensus 153 ~~~l~~~~~~--~~~~v~~~~P--~NPtG~~~-~~~~~~~i~~~~~~~~~~iI~Dd~y~~~~~~~~~~~~~~~~~~~~~~ 227 (386)
T PRK07550 153 PAAAEALITP--RTRAIALVTP--NNPTGVVY-PPELLHELYDLARRHGIALILDETYRDFDSGGGAPHDLFADPDWDDT 227 (386)
T ss_pred HHHHHHHhcc--cCcEEEEeCC--CCCCCccc-CHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCcchhhCCCcccc
Confidence 7888888863 2234455555 78899866 688899999999999999999999987732211 1 11111111223
Q ss_pred ee---eeccccC-CCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc--ccHHHHHHHHHH
Q psy8199 486 FL---CLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK--DNILQRISQDMK 559 (965)
Q Consensus 486 iv---t~sK~l~-gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~--~~~~~~~~~~~~ 559 (965)
++ +|||.++ .| +++|++++++++++.+.. .....+.+.+.+++.++.++|+.+.+ +...+.++++.+
T Consensus 228 ~i~~~S~SK~~g~~G-~RiG~i~~~~~~~~~~~~------~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~ 300 (386)
T PRK07550 228 LVHLYSFSKSYALTG-HRVGAVVASPARIAEIEK------FMDTVAICAPRIGQIAVAWGLPNLADWRAGNRAEIARRRD 300 (386)
T ss_pred EEEEecchhhccCcc-cceEeeecCHHHHHHHHH------HHhhcccCCCcHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 43 7899987 45 899999999998887765 23334556678888888887754321 223445566666
Q ss_pred HHHHHHHcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHH-HcCcEEeec-------CCEEEEeCCcccCH
Q psy8199 560 KITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAAL-KNELLLRPI-------GNTVYLMPPYILNK 631 (965)
Q Consensus 560 ~l~~~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~-------~~~lR~~p~~~~t~ 631 (965)
++.+.|... +++......|.++++.+. ..+ ....+++..|. ++||.+.|+ ++++|++.. ..++
T Consensus 301 ~l~~~L~~~---~~~~~~~~g~~~~~~~~~-~~~----~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~-~~~~ 371 (386)
T PRK07550 301 AFRAVFARL---PGWELLASGAYFAYVRHP-FPD----RPSREVARRLAKEAGILCLPGTMFGPGQEGYLRLAFA-NADV 371 (386)
T ss_pred HHHHHHHhC---CCceeCCCceEEEEecCC-CCC----CCHHHHHHHHHHhcCEEEeCchhhCCCCCCEEEEEee-cCCH
Confidence 666666543 233222233445555543 101 11345767664 689999873 258999964 2468
Q ss_pred HHHHHHHHhhhc
Q psy8199 632 NEIQHMTSAIFQ 643 (965)
Q Consensus 632 ~~i~~~~~~l~~ 643 (965)
++++++++++.+
T Consensus 372 ~~~~~~~~~l~~ 383 (386)
T PRK07550 372 AGIGELVERLRA 383 (386)
T ss_pred HHHHHHHHHHHh
Confidence 889999888764
|
|
| >PRK09082 methionine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.2e-18 Score=191.26 Aligned_cols=331 Identities=10% Similarity=0.061 Sum_probs=214.0
Q ss_pred cccccccccchhccCCCCCHHHHHHHHHHHhhc-cccccCCCCcHHHHHHHHHHHhhcCCC--CC-eEEEcCChhHHHHH
Q psy8199 254 KRYLDAISSWWVNLFGHSNSYINKALKNQLNKL-EHVMLSNLTHKPVIKLSEKLSSLTQYK--LG-HCFYGSDGASAVEV 329 (965)
Q Consensus 254 ~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~-~~~~~~~~~~~~~~~la~~l~~~~~~~--~~-~v~~~~sGseA~~~ 329 (965)
+.++|+..|.. .++ .+|.+.+++.+.++.. ..|....+..+.+..+++.+.+.++.. .+ ++++++||++|+..
T Consensus 30 ~~~i~l~~g~~--~~~-~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~~a~~l~~~~~~~~~~~~~i~~t~G~~~al~~ 106 (386)
T PRK09082 30 HGAINLSQGFP--DFD-GPPYLVEALAYAMAAGHNQYPPMTGVAALREAIAAKTARLYGRQYDADSEITVTAGATEALFA 106 (386)
T ss_pred CCEEEecCCCC--CCC-CCHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCHHHHHHH
Confidence 46788887743 233 4788999998877542 233334456667788888888776533 23 79999999999999
Q ss_pred HHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHH
Q psy8199 330 ALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIF 409 (965)
Q Consensus 330 Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 409 (965)
++..... ++++|++.+++|.++.......+ ..+..++....... .|++
T Consensus 107 ~~~~~~~--------~gd~Vli~~p~y~~~~~~~~~~g-------------~~~~~~~~~~~~~~-----------~d~~ 154 (386)
T PRK09082 107 AILALVR--------PGDEVIVFDPSYDSYAPAIELAG-------------GRAVRVALQPPDFR-----------VDWQ 154 (386)
T ss_pred HHHHHcC--------CCCEEEEeCCCchhhHHHHHHcC-------------CEEEEEecCccccc-----------CCHH
Confidence 9986642 56889999999877633222221 12333333111111 3678
Q ss_pred HHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccccc--ccccccCCCccee
Q psy8199 410 DLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKF--FACEHAEIWPDFL 487 (965)
Q Consensus 410 ~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~--~~~~~~~~~pDiv 487 (965)
++++.+. +++.+|++.. ++|++|.+. +.+.+++|.++|++||+++|+||+|..+-..+.. ......+..+.++
T Consensus 155 ~l~~~~~---~~~~~v~l~~-p~NPtG~~~-~~~~~~~i~~~a~~~~i~li~De~y~~~~~~~~~~~s~~~~~~~~~~~i 229 (386)
T PRK09082 155 RFAAAIS---PRTRLIILNT-PHNPSGTVW-SAADMRALWQLIAGTDIYVLSDEVYEHIVFDGAGHASVLRHPELRERAF 229 (386)
T ss_pred HHHHhcC---ccceEEEEeC-CCCCCCcCC-CHHHHHHHHHHHHHCCEEEEEehhhhhhccCCCCCCChhhCcCccCcEE
Confidence 8888775 2455555655 589999876 6777999999999999999999999766433321 1122223333444
Q ss_pred ---eeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhccc----HHHHHHHHHHH
Q psy8199 488 ---CLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDN----ILQRISQDMKK 560 (965)
Q Consensus 488 ---t~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~----~~~~~~~~~~~ 560 (965)
+|||.++..++++|++++++++++.+.. ......++.+++++.++.+.|+. .+. +.+.++++.+.
T Consensus 230 ~~~S~SK~~~~~G~RiG~iv~~~~l~~~~~~------~~~~~~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~~ 301 (386)
T PRK09082 230 VVSSFGKTYHVTGWKVGYCVAPAALSAEFRK------VHQYNTFTVNTPAQLALADYLRA--EPEHYLELPAFYQAKRDR 301 (386)
T ss_pred EEeechhhccchhhhhhhhhCCHHHHHHHHH------HHhhhcCCCChHHHHHHHHHHhC--ChHHHHHHHHHHHHHHHH
Confidence 6899986322899999999999988765 22234566788888887777642 222 33445566666
Q ss_pred HHHHHHcccCCCceeeeeceeEE-EEEEEeecCccchhhHHHHHHHHH-HHcCcEEeecC---------CEEEEeCCccc
Q psy8199 561 ITKALTSLITHPKIINFRQKGMI-WAFDVIIEDPEQIETFSKKFFVAA-LKNELLLRPIG---------NTVYLMPPYIL 629 (965)
Q Consensus 561 l~~~L~~l~~~~~i~~v~g~G~~-~~i~~~~~~~~~~~~~~~~~~~~l-~~~Gi~~~~~~---------~~lR~~p~~~~ 629 (965)
+.+.|++. ++...++.|.+ +++.+..-+. ....++.+.| .++||.+.|+. +++|++ +..
T Consensus 302 ~~~~L~~~----~~~~~~~~g~~~~~~~~~~~~~----~~~~~~~~~l~~~~~v~v~pg~~f~~~~~~~~~~Ri~--~~~ 371 (386)
T PRK09082 302 FRAALANS----RFKLLPCEGTYFQLVDYSAISD----LDDVEFCQWLTREHGVAAIPLSVFYADPFPHRLVRLC--FAK 371 (386)
T ss_pred HHHHHHhC----CCcccCCCeeEEEEEeccccCC----CCHHHHHHHHHHhCCEEEeCcHHhCCCCCCCCEEEEE--ecC
Confidence 66666553 34444555555 4445530011 1134566665 57899987731 579999 556
Q ss_pred CHHHHHHHHHhhh
Q psy8199 630 NKNEIQHMTSAIF 642 (965)
Q Consensus 630 t~~~i~~~~~~l~ 642 (965)
+++.+++.++++.
T Consensus 372 ~~~~l~~~~~rl~ 384 (386)
T PRK09082 372 QEETLDAAAERLC 384 (386)
T ss_pred CHHHHHHHHHHHh
Confidence 8888998888775
|
|
| >PRK07777 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.3e-18 Score=191.08 Aligned_cols=334 Identities=8% Similarity=0.053 Sum_probs=210.9
Q ss_pred cccccccccchhccCCCCCHHHHHHHHHHHhh-ccccccCCCCcHHHHHHHHHHHhhcCCC--CC-eEEEcCChhHHHHH
Q psy8199 254 KRYLDAISSWWVNLFGHSNSYINKALKNQLNK-LEHVMLSNLTHKPVIKLSEKLSSLTQYK--LG-HCFYGSDGASAVEV 329 (965)
Q Consensus 254 ~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~-~~~~~~~~~~~~~~~~la~~l~~~~~~~--~~-~v~~~~sGseA~~~ 329 (965)
..++|+..|..... .++.+.+++.+.+.. ...|....+..+.+..+++.+.+..+.. .+ ++++|+||++|+..
T Consensus 24 ~~~i~l~~g~p~~~---~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~ 100 (387)
T PRK07777 24 TGAVNLGQGFPDED---GPPEMLEAAQEAIAGGVNQYPPGPGIPELRAAIAAQRRRRYGLEYDPDTEVLVTVGATEAIAA 100 (387)
T ss_pred CCeEEccCCCCCCC---CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHHH
Confidence 36788888764332 256788888776654 2233333445566677777776665432 33 79999999999999
Q ss_pred HHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCC-CCCCCCCChhHHHHHHH
Q psy8199 330 ALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDS-RNINKGNSANEIARCAI 408 (965)
Q Consensus 330 Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~ 408 (965)
++.... .++++|++..++|+++.......+. ....++.... .... .|+
T Consensus 101 ~~~~~~--------~~gd~vli~~p~y~~~~~~~~~~g~-------------~~~~~~~~~~~~~~~----------~d~ 149 (387)
T PRK07777 101 AVLGLV--------EPGDEVLLIEPYYDSYAAVIAMAGA-------------HRVPVPLVPDGRGFA----------LDL 149 (387)
T ss_pred HHHHhc--------CCCCEEEEeCCCchhhHHHHHHCCC-------------EEEEeecCCccCCCc----------CCH
Confidence 887553 3567899999999887422222211 1222222111 0000 267
Q ss_pred HHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccc-ccccccc-CCCcce
Q psy8199 409 FDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK-FFACEHA-EIWPDF 486 (965)
Q Consensus 409 ~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~-~~~~~~~-~~~pDi 486 (965)
++|++++.+ ++.+|++.+ ++|++|.+. +.+.+++|.++|++|++++|+||+|.++...+. +.....+ +...++
T Consensus 150 ~~l~~~~~~---~~~~v~l~~-p~NPtG~~~-~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~ 224 (387)
T PRK07777 150 DALRAAVTP---RTRALIVNS-PHNPTGTVL-TAAELAAIAELAVEHDLLVITDEVYEHLVFDGARHLPLATLPGMRERT 224 (387)
T ss_pred HHHHHhcCc---ccEEEEEcC-CCCCCCccC-CHHHHHHHHHHHHhcCcEEEEeccchhcccCCCCcccHhhCCCCcCcE
Confidence 888877742 455666666 689999876 778899999999999999999999987744332 1122211 222222
Q ss_pred e---eeccccC-CCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh--cccHHHHHHHHHHH
Q psy8199 487 L---CLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN--KDNILQRISQDMKK 560 (965)
Q Consensus 487 v---t~sK~l~-gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~--~~~~~~~~~~~~~~ 560 (965)
+ +|||.++ .| +++|++++++++++.+.. .....++..+++.+.++..+|+..+ ...+.+.++++.+.
T Consensus 225 i~~~S~SK~~g~~G-lRiG~~~~~~~l~~~~~~------~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~ 297 (387)
T PRK07777 225 VTISSAAKTFNVTG-WKIGWACGPAPLIAAVRA------AKQYLTYVGGAPFQPAVAHALDHEDAWVAALRDSLQAKRDR 297 (387)
T ss_pred EEEeechhhccCcC-ceeEEEecCHHHHHHHHH------HHhhcccCCCCHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 2 6899987 45 899999999998887764 1233455556666666666664211 12345566677777
Q ss_pred HHHHHHcccCCCceeeeeceeEEEE-EEEeecCccchhhHHHHHHHHHH-HcCcEEeec----------CCEEEEeCCcc
Q psy8199 561 ITKALTSLITHPKIINFRQKGMIWA-FDVIIEDPEQIETFSKKFFVAAL-KNELLLRPI----------GNTVYLMPPYI 628 (965)
Q Consensus 561 l~~~L~~l~~~~~i~~v~g~G~~~~-i~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~----------~~~lR~~p~~~ 628 (965)
+.+.|++. ++....+.|.++. +.+. ..+. .....+++.|. ++||.+.|+ .+++|++ +.
T Consensus 298 l~~~L~~~----~~~~~~~~g~~~~~~~~~-~~~~---~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~~~~~Ri~--~~ 367 (387)
T PRK07777 298 LAAGLAEA----GFEVHDSAGTYFLCADPR-PLGY---DDGTEFCRALPERVGVAAIPMSVFYDPADAWNHLVRFA--FC 367 (387)
T ss_pred HHHHHHhC----CCCccCCCcceEEEeccc-ccCC---CCHHHHHHHHHHhCCEEEeCchHhCCCCcCCCCeEEEE--ec
Confidence 77777654 3333445555544 4542 1110 11346778886 679999763 1479999 55
Q ss_pred cCHHHHHHHHHhhhc
Q psy8199 629 LNKNEIQHMTSAIFQ 643 (965)
Q Consensus 629 ~t~~~i~~~~~~l~~ 643 (965)
.+++++++.++++.+
T Consensus 368 ~~~~~l~~~l~~l~~ 382 (387)
T PRK07777 368 KRDDTLDEAIRRLRA 382 (387)
T ss_pred CCHHHHHHHHHHHHH
Confidence 688899999888764
|
|
| >PTZ00377 alanine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.4e-17 Score=193.77 Aligned_cols=329 Identities=13% Similarity=0.115 Sum_probs=206.3
Q ss_pred CHHHHHHHHHHHhhc----cccccCCCCcHHHHHHHHHHHhhcC--CCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCC
Q psy8199 272 NSYINKALKNQLNKL----EHVMLSNLTHKPVIKLSEKLSSLTQ--YKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLN 345 (965)
Q Consensus 272 ~p~v~~av~~~~~~~----~~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~ 345 (965)
+..+++++.+.++.. ..|....+..+.++.+++.+.+..+ .+.++|++|+|+++|+..++++... .+
T Consensus 90 P~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~~-------~~ 162 (481)
T PTZ00377 90 PADVVARAKEYLNAIGGGTGAYTDSAGYPFVRKAVAAFIERRDGVPKDPSDIFLTDGASSGIKLLLQLLIG-------DP 162 (481)
T ss_pred CHHHHHHHHHHHHhCCCcccCcCcccCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHHHHHHHhcc-------CC
Confidence 456778877665542 2244444566677777777776533 3567999999999999999987742 25
Q ss_pred ceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhC---CCcE
Q psy8199 346 KKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKN---HNKI 422 (965)
Q Consensus 346 ~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~---~~~~ 422 (965)
++.|++.+++|.++.......++ ..+.+|.....+.. .|+++|++++.+. ..++
T Consensus 163 gD~Vlv~~P~y~~y~~~~~~~g~-------------~~v~v~~~~~~~~~----------~d~~~l~~~l~~~~~~~~~~ 219 (481)
T PTZ00377 163 SDGVMIPIPQYPLYSAAITLLGG-------------KQVPYYLDEEKGWS----------LDQEELEEAYEQAVRNGITP 219 (481)
T ss_pred CCEEEECCCCchhHHHHHHHcCC-------------EEEEEEeccccCCC----------CCHHHHHHHHHHHHhcCCCe
Confidence 68899999999988544333332 22333332111100 2678888888642 1245
Q ss_pred E-EEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccc-ccc-cccc--cCCCc------cee---e
Q psy8199 423 A-AIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTG-KFF-ACEH--AEIWP------DFL---C 488 (965)
Q Consensus 423 a-aii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G-~~~-~~~~--~~~~p------Div---t 488 (965)
. .++++| +|++|.+. +.+.+++|.++|++||+++|+||+|..+...+ ..+ +... .++.+ .++ +
T Consensus 220 k~l~l~~P--~NPTG~~~-s~e~~~~i~~~a~~~~~~iI~De~Y~~l~~~~~~~~~s~~~~~~~l~~~~~~~~~vi~~~S 296 (481)
T PTZ00377 220 RALVVINP--GNPTGQVL-TRDVMEEIIKFCYEKGIVLMADEVYQENIYDGEKPFISFRKVLLELPAEYNTDVELVSFHS 296 (481)
T ss_pred eEEEEECC--CCCCCcCC-CHHHHHHHHHHHHHCCCEEEEehhhHhhccCCCCCcccHHHHHHhhcccccCCeEEEEEec
Confidence 4 556666 89999876 78889999999999999999999998764322 111 1110 12222 244 5
Q ss_pred eccccC--CCcccceeeee---cHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh--c----------ccHH
Q psy8199 489 LSKGIT--GGYLPLSLVMT---TDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN--K----------DNIL 551 (965)
Q Consensus 489 ~sK~l~--gG~~pig~v~~---~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~--~----------~~~~ 551 (965)
|||++. .| |++|++++ ++++++.+.. . ...+++.+++++.++.++|+-.. + ....
T Consensus 297 ~SK~~~~~~G-lRiG~~~~~~~p~~li~~l~~------~-~~~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~~ 368 (481)
T PTZ00377 297 TSKGIIGECG-RRGGYFELTNIPPEVREQIYK------L-ASINLCSNVVGQLMTGLMCNPPREGDASYPLYKRERDAIF 368 (481)
T ss_pred CCcccccCCc-CceEEEEEeCCCHHHHHHHHH------H-hheecCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHHH
Confidence 899753 25 89999986 8899888865 1 22344678899999988885210 0 1112
Q ss_pred HHHHHHHHHHHHHHHcccCCCceeeeeceeEEEEE-EEeecCccch------hhHHHHH-HHHHHHcCcEEeecC-----
Q psy8199 552 QRISQDMKKITKALTSLITHPKIINFRQKGMIWAF-DVIIEDPEQI------ETFSKKF-FVAALKNELLLRPIG----- 618 (965)
Q Consensus 552 ~~~~~~~~~l~~~L~~l~~~~~i~~v~g~G~~~~i-~~~~~~~~~~------~~~~~~~-~~~l~~~Gi~~~~~~----- 618 (965)
+.++++.+.+.+.|++ .+++....++|.|+.+ .+........ ......+ ...+.++||.+.|+.
T Consensus 369 ~~~~~rr~~l~~~L~~---~~g~~~~~p~gg~fl~~~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~F~~~ 445 (481)
T PTZ00377 369 TSLKRRAELLTDELNK---IEGVSCQPVEGAMYAFPRIELPEKAIQEAKERGLAPDVLYCLELLESTGIVVVPGSGFGQK 445 (481)
T ss_pred HHHHHHHHHHHHHHhc---CCCcEeecCCeeEEEEeeccCchhhHHHHHhcCCCcHHHHHHHHHHHcCEEEeCCcccCCC
Confidence 2334555555555544 4567777787766655 3320000000 0001223 455668899998732
Q ss_pred ---CEEEEeCCcccCHHHHHHHHHhhhcccc
Q psy8199 619 ---NTVYLMPPYILNKNEIQHMTSAIFQTFN 646 (965)
Q Consensus 619 ---~~lR~~p~~~~t~~~i~~~~~~l~~~~~ 646 (965)
+++|++ +..++++++++++++.+.+.
T Consensus 446 ~~~~~~Rls--~~~~~e~l~~~l~rl~~~~~ 474 (481)
T PTZ00377 446 PGTYHFRIT--ILPPEEQIEEMVKKIKEFHE 474 (481)
T ss_pred CCCCEEEEE--ECCCHHHHHHHHHHHHHHHH
Confidence 489999 56778899999998876543
|
|
| >PRK05839 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.4e-17 Score=187.77 Aligned_cols=331 Identities=12% Similarity=0.018 Sum_probs=206.4
Q ss_pred cCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcC--CCCCeEEEcCChhHHHH
Q psy8199 251 FSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQ--YKLGHCFYGSDGASAVE 328 (965)
Q Consensus 251 ~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~~~sGseA~~ 328 (965)
..|+.++|+..|.. +++ .++.+.+++.+.......|....+..+.++.+++.+.+..+ ...++|++|+|+++|+.
T Consensus 21 ~~~~~~i~l~~~~p--~~~-~~~~~~~a~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~g~~~~~~~I~it~G~~~al~ 97 (374)
T PRK05839 21 NKEYKGLDLTIGEP--QFE-TPKFIQDALKNNAHLLNKYPKSAGEESLREAQRGFFKRRFKIELKENELIPTFGTREVLF 97 (374)
T ss_pred cCCCCeEEcCCCCC--CCC-CCHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHH
Confidence 34889999988754 455 36888888887665555555455666788888888888765 45789999999999998
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHH
Q psy8199 329 VALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAI 408 (965)
Q Consensus 329 ~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 408 (965)
.++++...- .+++.|++..++|.++...+...+. .+..+|.....+.. .|+
T Consensus 98 ~~~~~~~~~------~~gd~vlv~~P~y~~~~~~~~~~g~-------------~v~~v~~~~~~~~~----------~d~ 148 (374)
T PRK05839 98 NFPQFVLFD------KQNPTIAYPNPFYQIYEGAAIASRA-------------KVLLMPLTKENDFT----------PSL 148 (374)
T ss_pred HHHHHHhcC------CCCCEEEECCCCchhhHHHHHhcCC-------------EEEEeecccccCCc----------CCc
Confidence 887755320 2467899999999887443322221 23333332111000 012
Q ss_pred HHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccccccccccc----C--C
Q psy8199 409 FDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHA----E--I 482 (965)
Q Consensus 409 ~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~----~--~ 482 (965)
.+. .++ ...+.++++| +|++|.+. +.+.+++|.++|++||+++|+||+|..|...+...+.... + .
T Consensus 149 ~~~--~~~---~~k~v~i~nP--~NPTG~~~-s~~~l~~i~~~~~~~~~~ii~DE~Y~~~~~~~~~~s~~~~~~~~~~~~ 220 (374)
T PRK05839 149 NEK--ELQ---EVDLVILNSP--NNPTGRTL-SLEELIEWVKLALKHDFILINDECYSEIYENTPPPSLLEASILVGNES 220 (374)
T ss_pred chh--hhc---cccEEEEeCC--CCCcCccc-CHHHHHHHHHHHHHcCCEEEeccchhhcccCCCCCCHhhhhcccCccc
Confidence 111 121 2234455556 99999876 6778999999999999999999999877322222111110 1 1
Q ss_pred Cccee---eeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHH
Q psy8199 483 WPDFL---CLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMK 559 (965)
Q Consensus 483 ~pDiv---t~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~ 559 (965)
.++++ +|||.++..++++|++++++++++.+.. .....+++.+.+++.++.++|. +++..++.++.-+
T Consensus 221 ~~~vi~~~SfSK~~~~~GlRiG~ii~~~~~~~~~~~------~~~~~~~~~~~~~q~~~~~~l~---~~~~~~~~~~~~~ 291 (374)
T PRK05839 221 FKNVLVINSISKRSSAPGLRSGFIAGDASILKKYKA------YRTYLGCASPLPLQKAAAVAWL---DDEHAEFFRNIYA 291 (374)
T ss_pred cCcEEEEeccccccCCccceeEEEecCHHHHHHHHH------HHhhcCCCCChHHHHHHHHHhc---cchHHHHHHHHHH
Confidence 13444 6899765433899999999999887754 1112234567777887777663 2333333333222
Q ss_pred HHHHHHHcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHH-HcCcEEeec---------CCEEEEeCCccc
Q psy8199 560 KITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAAL-KNELLLRPI---------GNTVYLMPPYIL 629 (965)
Q Consensus 560 ~l~~~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~---------~~~lR~~p~~~~ 629 (965)
.-++.+.+.. ++. .+..|.++.+.+. + ..++.+.|. ++||.+.|+ .+++|++ +..
T Consensus 292 ~~~~~~~~~l---~~~-~p~gg~fi~~~~~--~-------~~~~~~~l~~~~gi~v~pg~~f~~~~~~~~~iRis--~~~ 356 (374)
T PRK05839 292 KNLKLAREIL---GIT-IPPATFYVWLPVD--N-------DEEFTKKLYQNEGIKVLPGSFLGRNGIGKGYVRIA--LVY 356 (374)
T ss_pred HHHHHHHHhc---CCC-CCCeeEEEEEeCC--C-------hHHHHHHHHHHCCEEEeCchhhCCCCCCCCeEEEE--ecC
Confidence 2223232221 112 3344666666553 1 235667776 499999873 2689999 456
Q ss_pred CHHHHHHHHHhhhccc
Q psy8199 630 NKNEIQHMTSAIFQTF 645 (965)
Q Consensus 630 t~~~i~~~~~~l~~~~ 645 (965)
+++++.++++++.+.+
T Consensus 357 ~~~~~~~~l~~l~~~l 372 (374)
T PRK05839 357 DTPKLEKALEIIKTYL 372 (374)
T ss_pred CHHHHHHHHHHHHHHh
Confidence 7888999888876543
|
|
| >PRK14862 rimO ribosomal protein S12 methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.4e-18 Score=195.38 Aligned_cols=198 Identities=15% Similarity=0.184 Sum_probs=157.9
Q ss_pred EeEeeccCCCCCCCCCCCCCCcCCCCcccccCCCHHHHHHHHHHHHHCCCCEEEEeeccCCCCccc-------------H
Q psy8199 683 VLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRD-------------L 749 (965)
Q Consensus 683 ~~i~~~s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~-------------~ 749 (965)
+.+.+ |+|||++|.||..+..++ +++.+++++|+++++.+.+.|++++.+.+........+ .
T Consensus 141 a~v~i-srGCp~~CsFC~ip~~~G----~~rsr~~e~Vv~Ei~~l~~~g~kei~l~~~d~~~yg~d~~~~~~~~~~~~~~ 215 (440)
T PRK14862 141 AYLKI-SEGCNHRCTFCIIPSMRG----DLVSRPIGDVLREAERLVKAGVKELLVISQDTSAYGVDVKYRTGFWNGRPVK 215 (440)
T ss_pred EEEEe-ccCCCCCCccCCcccccC----CccccCHHHHHHHHHHHHHCCCceEEEEecChhhhccccccccccccccchh
Confidence 44566 999999999998775433 35668999999999999999999999985432100000 3
Q ss_pred HHHHHHHHHHHhcCcEeEE---ecCCCCHHHHHHHHHhCCC--eEeccCCC-CHHHHhcccCCCCHHHHHHHHHHHHHc-
Q psy8199 750 DNIENMICEVKKIGLETCL---TLGMLNENQAYRLKKVGLD--YYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNV- 822 (965)
Q Consensus 750 ~~~~~~~~~i~~~~~~i~~---~~~~~~~e~l~~Lk~aG~~--~i~i~~es-~~~~~~~i~~~~~~~~~~~~i~~~~~~- 822 (965)
.++.++++.+.+.++.+.+ .+...+++.++.|++ |.. .+.+++|| ++++++.|++..++++.+++++.+++.
T Consensus 216 ~~~~~Ll~~l~~~~~~~r~~~~~p~~~~dell~~m~~-g~~~~~l~IglESgs~~vLk~m~r~~~~~~~~~~i~~lr~~~ 294 (440)
T PRK14862 216 TRMTDLCEALGELGAWVRLHYVYPYPHVDEVIPLMAE-GKILPYLDIPFQHASPRVLKRMKRPASVEKTLERIKKWREIC 294 (440)
T ss_pred hHHHHHHHHHHhcCCEEEEecCCCCcCCHHHHHHHhc-CCCccccccccccCCHHHHHhcCCCCCHHHHHHHHHHHHHHC
Confidence 5788888888876663332 333457899999999 654 78899999 999999999999999999999999996
Q ss_pred -CCceeeeEEEec-CCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCCC-CCCCHHHHHHHHHH
Q psy8199 823 -GINICCGGIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGS-SILDPLEFIRTIAV 888 (965)
Q Consensus 823 -Gi~v~~~~i~Gl-~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~~-~~~~~~~~~~~ia~ 888 (965)
|+.+.+++|+|+ |||.+++.++++++++++ ++.+.++.|.|.||||.... ...++++..+....
T Consensus 295 ~~i~i~t~~IvGfPgET~edf~~tl~fi~e~~--~d~~~~f~ysP~pGT~a~~~~~~v~~~~~~~r~~~ 361 (440)
T PRK14862 295 PDLTIRSTFIVGFPGETEEDFQMLLDFLKEAQ--LDRVGCFKYSPVEGATANDLPDQVPEEVKEERWAR 361 (440)
T ss_pred CCceecccEEEECCCCCHHHHHHHHHHHHHcC--CCeeeeEeecCCCCCchhhCCCCCCHHHHHHHHHH
Confidence 788889999998 799999999999999999 89999999999999998643 34666554444333
|
|
| >PRK08361 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=8e-18 Score=191.34 Aligned_cols=335 Identities=16% Similarity=0.128 Sum_probs=207.8
Q ss_pred cccccccccchhccCCCCCHHHHHHHHHHHhhc-cccccCCCCcHHHHHHHHHHHhhcC--CCCCeEEEcCChhHHHHHH
Q psy8199 254 KRYLDAISSWWVNLFGHSNSYINKALKNQLNKL-EHVMLSNLTHKPVIKLSEKLSSLTQ--YKLGHCFYGSDGASAVEVA 330 (965)
Q Consensus 254 ~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~-~~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~~~sGseA~~~A 330 (965)
..++|+..|.. .++. ++.+.+++.+.+... ..|....+..+....+++.+.+..+ .+.+++++++|+++|+..+
T Consensus 33 ~~~i~l~~~~~--~~~~-~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~ 109 (391)
T PRK08361 33 ENVISLGIGEP--DFDT-PKNIKEAAKRALDEGWTHYTPNAGIPELREAIAEYYKKFYGVDVDVDNVIVTAGAYEATYLA 109 (391)
T ss_pred cCeEEcCCCCC--CCCC-CHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCcccEEEeCChHHHHHHH
Confidence 45788877643 3443 688889988876542 2232233445566667766655443 3567999999999999999
Q ss_pred HHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCC-CCCCCCCChhHHHHHHHH
Q psy8199 331 LKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDS-RNINKGNSANEIARCAIF 409 (965)
Q Consensus 331 l~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~ 409 (965)
++.... +++.|++.+++|.++...+.. .| ..+..+|.... .+. .|++
T Consensus 110 ~~~l~~--------~g~~Vlv~~p~y~~~~~~~~~-~g------------~~~~~v~~~~~~~~~-----------~d~~ 157 (391)
T PRK08361 110 FESLLE--------EGDEVIIPDPAFVCYVEDAKI-AE------------AKPIRIPLREENEFQ-----------PDPD 157 (391)
T ss_pred HHHhcC--------CCCEEEEcCCCCcccHHHHHH-cC------------CEEEEEecCCccCCC-----------CCHH
Confidence 886632 567899999999776322211 11 12333333211 111 3678
Q ss_pred HHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccc-cccccccCCCccee-
Q psy8199 410 DLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK-FFACEHAEIWPDFL- 487 (965)
Q Consensus 410 ~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~-~~~~~~~~~~pDiv- 487 (965)
++++.+.+ ++.++++.. ++|++|.+. +.+.+++|.++|+++++++|+||+|..|...+. ...........+++
T Consensus 158 ~l~~~i~~---~~~~v~i~~-p~NPtG~~~-~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~i~~ 232 (391)
T PRK08361 158 ELLELITK---RTRMIVINY-PNNPTGATL-DKEVAKAIADIAEDYNIYILSDEPYEHFLYEGAKHYPMIKYAPDNTILA 232 (391)
T ss_pred HHHHhccc---ccEEEEEeC-CCCCCCcCc-CHHHHHHHHHHHHHcCeEEEEEcccccceeCCCCCCCHhhcCCCCEEEE
Confidence 88887753 344444544 489999766 677799999999999999999999987633222 11111111112233
Q ss_pred -eeccccC-CCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcc----cHHHHHHHHHHHH
Q psy8199 488 -CLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKD----NILQRISQDMKKI 561 (965)
Q Consensus 488 -t~sK~l~-gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~----~~~~~~~~~~~~l 561 (965)
+|||.++ .| +++|++++++++++.+.. .....+++.+.+.+.++.++|+.-... ...+.++++.+.+
T Consensus 233 ~s~SK~~~~~G-lRiG~~~~~~~~~~~~~~------~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 305 (391)
T PRK08361 233 NSFSKTFAMTG-WRLGFVIAPEQVIKDMIK------LHAYIIGNVASFVQIAGIEALRSKESWKAVEEMRKEYNERRKLV 305 (391)
T ss_pred ecCchhcCCcH-hhhhhhccCHHHHHHHHH------HHhhhccCCChHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHH
Confidence 6899887 45 899999999998887654 112234556778888888877421111 1233344444445
Q ss_pred HHHHHcccCCCceeeeeceeEE-EEEEEeecCccchhhHHHHHHHHHH-HcCcEEeec-------CCEEEEeCCcccCHH
Q psy8199 562 TKALTSLITHPKIINFRQKGMI-WAFDVIIEDPEQIETFSKKFFVAAL-KNELLLRPI-------GNTVYLMPPYILNKN 632 (965)
Q Consensus 562 ~~~L~~l~~~~~i~~v~g~G~~-~~i~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~-------~~~lR~~p~~~~t~~ 632 (965)
.+.|+. .+++....+.|.+ +++.+. ..+. ...++.+.|. ++||.+.|+ .+++|++ +..+++
T Consensus 306 ~~~L~~---~~~~~~~~p~g~~~~~~~l~-~~~~----~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~--~~~~~~ 375 (391)
T PRK08361 306 LKRLKE---MPHIKVFEPKGAFYVFANID-ETGM----SSEDFAEWLLEKARVVVIPGTAFGKAGEGYIRIS--YATSKE 375 (391)
T ss_pred HHHHHh---CCCCeecCCCEEEEEEEECC-CCCC----CHHHHHHHHHHhCCEEEcCchhhCCCCCCEEEEE--ecCCHH
Confidence 555544 3455555666654 444553 1111 1335666665 579999873 2589999 556788
Q ss_pred HHHHHHHhhhccc
Q psy8199 633 EIQHMTSAIFQTF 645 (965)
Q Consensus 633 ~i~~~~~~l~~~~ 645 (965)
+++++++++.+.+
T Consensus 376 ~l~~al~~l~~~l 388 (391)
T PRK08361 376 KLIEAMERMEKAL 388 (391)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888776543
|
|
| >PRK14330 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2e-18 Score=196.77 Aligned_cols=184 Identities=15% Similarity=0.204 Sum_probs=150.9
Q ss_pred EeEeeccCCCCCCCCCCCCCCcCCCCcccccCCCHHHHHHHHHHHHHCCCCEEEEeeccCCCCc---ccHHHHHHHHHHH
Q psy8199 683 VLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKD---RDLDNIENMICEV 759 (965)
Q Consensus 683 ~~i~~~s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~---~~~~~~~~~~~~i 759 (965)
+.+.+ ++|||++|.||..+...+ +++.+++++|+++++.+.+.|++++.|++....... .+...+.++++.+
T Consensus 142 ~~v~i-~rGC~~~CsFC~ip~~~G----~~rsr~~e~Iv~Ei~~l~~~g~kei~l~~~n~~~yg~~~~~~~~l~~Ll~~~ 216 (434)
T PRK14330 142 AWVTI-IYGCNRFCTYCIVPYTRG----REKSRPMEDILEEVEKLAKQGYREVTFLGQNVDAYGKDLKDGSSLAKLLEEA 216 (434)
T ss_pred EEEEc-ccCCCCCCCCCceECcCC----CCccCCHHHHHHHHHHHHHCCCcEEEEEEecccccccCCCCCccHHHHHHHH
Confidence 45777 899999999999765332 245689999999999999999999999875432110 1123455666555
Q ss_pred Hh-cCcE-eE---EecCCCCHHHHHHHHHhC--CCeEeccCCC-CHHHHhcccCCCCHHHHHHHHHHHHHc--CCceeee
Q psy8199 760 KK-IGLE-TC---LTLGMLNENQAYRLKKVG--LDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNV--GINICCG 829 (965)
Q Consensus 760 ~~-~~~~-i~---~~~~~~~~e~l~~Lk~aG--~~~i~i~~es-~~~~~~~i~~~~~~~~~~~~i~~~~~~--Gi~v~~~ 829 (965)
.+ .++. +. .++..++++.++.|+++| +.++++++|| +++.++.|+++++.+++.++++.+++. |+.+.++
T Consensus 217 ~~~~~~~~~~~~~~~p~~~~~ell~~l~~~~~~~~~l~iglQSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~~~i~i~~d 296 (434)
T PRK14330 217 SKIEGIERIWFLTSYPTDFSDELIEVIANSPKVAKSIHLPVQSGSNRILKLMNRRYTREEYLELIEKIRSKVPDASISSD 296 (434)
T ss_pred HhcCCceEEEEecCChhhcCHHHHHHHhcCCcccCceecCcCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEE
Confidence 43 2332 21 244667899999999998 7899999999 999999999999999999999999996 7889999
Q ss_pred EEEec-CCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCC
Q psy8199 830 GIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYG 873 (965)
Q Consensus 830 ~i~Gl-~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~ 873 (965)
+|+|+ |||.+++.++++++.+++ ++.+.++.|.|.||||+++
T Consensus 297 ~IvGfPgET~edf~~tl~fi~~~~--~~~~~~~~~sp~pGT~~~~ 339 (434)
T PRK14330 297 IIVGFPTETEEDFMETVDLVEKAQ--FERLNLAIYSPREGTVAWK 339 (434)
T ss_pred EEEECCCCCHHHHHHHHHHHHhcC--CCEEeeeeccCCCCChhhh
Confidence 99999 799999999999999999 9999999999999999987
|
|
| >PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.7e-18 Score=196.11 Aligned_cols=186 Identities=13% Similarity=0.205 Sum_probs=155.3
Q ss_pred EeEeeccCCCCCCCCCCCCCCcCCCCcccccCCCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcc---cHHHHHHHHHHH
Q psy8199 683 VLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDR---DLDNIENMICEV 759 (965)
Q Consensus 683 ~~i~~~s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~---~~~~~~~~~~~i 759 (965)
..+.+ ++|||++|.||..+...+ +.+.+++++|+++++.+.+.|+++|.|++........ ..+.+.++++.+
T Consensus 157 ~~i~I-~rGC~~~CsfC~~p~~~G----~~rsr~~e~Il~ei~~l~~~G~keI~l~g~~~~~yG~d~~~~~~l~~Ll~~l 231 (459)
T PRK14338 157 VHVPI-IYGCNMSCSYCVIPLRRG----RERSRPLAEIVEEVRRIAARGAKEITLLGQIVDSYGHDLPGRPDLADLLEAV 231 (459)
T ss_pred EEEEc-ccCCCCCCCcCCeeccCC----CCccCCHHHHHHHHHHHHHCCCeEEEEeeecCCCcccccCChHHHHHHHHHH
Confidence 45667 899999999998765322 2456799999999999999999999998853221111 134577788877
Q ss_pred Hhc-Cc---Ee-EEecCCCCHHHHHHHHHh--CCCeEeccCCC-CHHHHhcccCCCCHHHHHHHHHHHHHc--CCceeee
Q psy8199 760 KKI-GL---ET-CLTLGMLNENQAYRLKKV--GLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNV--GINICCG 829 (965)
Q Consensus 760 ~~~-~~---~i-~~~~~~~~~e~l~~Lk~a--G~~~i~i~~es-~~~~~~~i~~~~~~~~~~~~i~~~~~~--Gi~v~~~ 829 (965)
.+. ++ .+ +.++..++++.++.|++. |+.++++++|| ++++++.|+++++.+++.++++.+++. |+.+.++
T Consensus 232 ~~~~gi~~ir~~~~~p~~i~~ell~~l~~~~~~~~~v~lglQSgsd~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~i~~d 311 (459)
T PRK14338 232 HEIPGLERLRFLTSHPAWMTDRLIHAVARLPKCCPHINLPVQAGDDEVLKRMRRGYTVARYRELIARIREAIPDVSLTTD 311 (459)
T ss_pred HhcCCcceEEEEecChhhcCHHHHHHHhcccccccceecCcccCCHHHHHhccCCCCHHHHHHHHHHHHHhCCCCEEEEE
Confidence 763 43 33 336678899999999995 58999999999 999999999999999999999999998 7889999
Q ss_pred EEEec-CCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCCCC
Q psy8199 830 GIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSS 875 (965)
Q Consensus 830 ~i~Gl-~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~~~ 875 (965)
+|+|+ |||.+|+.++++++.+++ ++.+.++.|.|.|||+++..+
T Consensus 312 ~IvG~PgET~ed~~~ti~~l~~l~--~~~v~i~~ysp~pGT~~~~~~ 356 (459)
T PRK14338 312 IIVGHPGETEEQFQRTYDLLEEIR--FDKVHIAAYSPRPGTLAAEME 356 (459)
T ss_pred EEEECCCCCHHHHHHHHHHHHHcC--CCEeEEEecCCCCCChhhhCc
Confidence 99999 799999999999999999 899999999999999998754
|
|
| >PRK08207 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.8e-18 Score=193.99 Aligned_cols=201 Identities=19% Similarity=0.235 Sum_probs=156.7
Q ss_pred CCCCCCCCCCCCCCcCCCCcccccCCCHHHHHHHHHHHHH------CCCCEEEEeeccCCCCcccHHHHHHHHHHHHhc-
Q psy8199 690 GGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKS------DGATRFCMGAAWRELKDRDLDNIENMICEVKKI- 762 (965)
Q Consensus 690 ~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~------~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~- 762 (965)
..||.+|.||+|+.............-.+.++++++...+ .++..+.|.||.. ...+.+.+.++++.+++.
T Consensus 171 PFC~~~C~YCsf~s~~~~~~~~~~~~Y~~aL~~EI~~~~~~~~~~~~~v~tIyfGGGTP--t~L~~~~L~~Ll~~i~~~f 248 (488)
T PRK08207 171 PFCPTRCLYCSFPSYPIKGYKGLVEPYLEALHYEIEEIGKYLKEKGLKITTIYFGGGTP--TSLTAEELERLLEEIYENF 248 (488)
T ss_pred CCCCCcCCCCCCccccCCCCcchHHHHHHHHHHHHHHHHhhhcccCCceeEEEEeCCCc--cCCCHHHHHHHHHHHHHhc
Confidence 6799999999988642111111000124556666654432 2466788866643 334566667777666542
Q ss_pred ----Cc-EeEE---ecCCCCHHHHHHHHHhCCCeEeccCCC-CHHHHhcccCCCCHHHHHHHHHHHHHcCC-ceeeeEEE
Q psy8199 763 ----GL-ETCL---TLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGI-NICCGGII 832 (965)
Q Consensus 763 ----~~-~i~~---~~~~~~~e~l~~Lk~aG~~~i~i~~es-~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi-~v~~~~i~ 832 (965)
++ .+++ ++..++++.++.|+++|++++++|+|| ++++++.+.+.+++++..++++.++++|+ .+++.+|+
T Consensus 249 ~~~~~~~EiTvE~grPd~it~e~L~~Lk~~Gv~RISIGvQS~~d~vLk~igR~ht~e~v~~ai~~ar~~Gf~~In~DLI~ 328 (488)
T PRK08207 249 PDVKNVKEFTVEAGRPDTITEEKLEVLKKYGVDRISINPQTMNDETLKAIGRHHTVEDIIEKFHLAREMGFDNINMDLII 328 (488)
T ss_pred cccCCceEEEEEcCCCCCCCHHHHHHHHhcCCCeEEEcCCcCCHHHHHHhCCCCCHHHHHHHHHHHHhCCCCeEEEEEEe
Confidence 22 4444 566899999999999999999999999 99999999999999999999999999999 89999999
Q ss_pred ec-CCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCC----CCCCCHHHHHHHHHHHHHHCC
Q psy8199 833 GL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYG----SSILDPLEFIRTIAVARITMP 894 (965)
Q Consensus 833 Gl-~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~----~~~~~~~~~~~~ia~~R~~lp 894 (965)
|+ |||.+++.++++.+.+++ ++.++++.+.|.|||++.. ...++.++..+++..++..+.
T Consensus 329 GLPgEt~ed~~~tl~~l~~L~--pd~isv~~L~i~~gT~l~~~~~~~~~~~~~~~~~m~~~a~~~l~ 393 (488)
T PRK08207 329 GLPGEGLEEVKHTLEEIEKLN--PESLTVHTLAIKRASRLTENKEKYKVADREEIEKMMEEAEEWAK 393 (488)
T ss_pred CCCCCCHHHHHHHHHHHHhcC--cCEEEEEeceEcCCChHHHhcCcCCCcCHHHHHHHHHHHHHHHH
Confidence 99 799999999999999999 9999999999999999974 235677888888888887764
|
|
| >PRK07683 aminotransferase A; Validated | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.8e-17 Score=187.91 Aligned_cols=335 Identities=14% Similarity=0.105 Sum_probs=208.3
Q ss_pred cccccccccchhccCCCCCHHHHHHHHHHHhhc-cccccCCCCcHHHHHHHHHHHhhcC--CCCC-eEEEcCChhHHHHH
Q psy8199 254 KRYLDAISSWWVNLFGHSNSYINKALKNQLNKL-EHVMLSNLTHKPVIKLSEKLSSLTQ--YKLG-HCFYGSDGASAVEV 329 (965)
Q Consensus 254 ~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~-~~~~~~~~~~~~~~~la~~l~~~~~--~~~~-~v~~~~sGseA~~~ 329 (965)
..++|+..|.+. ++ .++.+.+++.+.++.. ..|....+..+.+..+++.+.+..+ .+.+ ++++++|+++|+..
T Consensus 28 ~~~i~l~~~~p~--~~-~~~~~~~a~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~~I~~t~G~~~al~~ 104 (387)
T PRK07683 28 DNLISLTIGQPD--FP-TPSHVKEAAKRAITENYTSYTHNAGLLELRKAACNFVKDKYDLHYSPESEIIVTIGASEAIDI 104 (387)
T ss_pred CCeEEecCCCCC--CC-CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHH
Confidence 467888776432 33 3678899999887652 2232233456666777777765433 2456 89999999999999
Q ss_pred HHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHH
Q psy8199 330 ALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIF 409 (965)
Q Consensus 330 Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 409 (965)
+++.... +++.|++..++|.++.......+. .+..++....... .|.+
T Consensus 105 ~~~~l~~--------~gd~Vl~~~p~y~~~~~~~~~~g~-------------~~~~~~~~~~~~~-----------~~~~ 152 (387)
T PRK07683 105 AFRTILE--------PGTEVILPAPIYPGYEPIIRLCGA-------------KPVFIDTRSTGFR-----------LTAE 152 (387)
T ss_pred HHHHhCC--------CCCEEEEcCCCccchHHHHHHcCC-------------EEEEeecCcccCC-----------CCHH
Confidence 9876532 567899999999887433322221 2333333211110 2457
Q ss_pred HHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccccccccccc-CCCccee-
Q psy8199 410 DLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHA-EIWPDFL- 487 (965)
Q Consensus 410 ~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~-~~~pDiv- 487 (965)
++++.+.+ ++.+|++.. ++|++|.+. +.+.+++|.++|+++|+++|+||+|..+...+.......+ +...+++
T Consensus 153 ~l~~~~~~---~~~~i~i~~-p~NPtG~~~-s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~ 227 (387)
T PRK07683 153 ALENAITE---KTRCVVLPY-PSNPTGVTL-SKEELQDIADVLKDKNIFVLSDEIYSELVYEQPHTSIAHFPEMREKTIV 227 (387)
T ss_pred HHHHhcCc---CceEEEEeC-CCCCCCcCC-CHHHHHHHHHHHHHcCeEEEEecccccceeCCCcCChhhccCCcCCeEE
Confidence 77777642 334444443 489999866 7777999999999999999999999876433322121112 2222333
Q ss_pred --eeccccC-CCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHH
Q psy8199 488 --CLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK--DNILQRISQDMKKIT 562 (965)
Q Consensus 488 --t~sK~l~-gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~--~~~~~~~~~~~~~l~ 562 (965)
+|||.++ .| +++|++++++++++.+.. .......+.+.+++.++.+.|+.-.. +...++++++.+.+.
T Consensus 228 ~~s~SK~~~~pG-lRiG~i~~~~~l~~~~~~------~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 300 (387)
T PRK07683 228 INGLSKSHSMTG-WRIGFLFAPSYLAKHILK------VHQYNVTCASSISQYAALEALTAGKDDAKMMRHQYKKRRDYVY 300 (387)
T ss_pred EeeccccccCcc-ceeEEEEcCHHHHHHHHH------HHHhccCCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHH
Confidence 6899887 45 899999999999888764 11112234567788888777752111 123444555666666
Q ss_pred HHHHcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHH-HHHcCcEEeec-------CCEEEEeCCcccCHHHH
Q psy8199 563 KALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVA-ALKNELLLRPI-------GNTVYLMPPYILNKNEI 634 (965)
Q Consensus 563 ~~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~-l~~~Gi~~~~~-------~~~lR~~p~~~~t~~~i 634 (965)
+.|.+. ++....+.|.++.+......... ...+... +.++||.+.|+ .+++|++ +..+++++
T Consensus 301 ~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~Ri~--~~~~~~~~ 370 (387)
T PRK07683 301 NRLISM----GLDVEKPTGAFYLFPSIGHFTMS----SFDFALDLVEEAGLAVVPGSAFSEYGEGYVRLS--YAYSIETL 370 (387)
T ss_pred HHHHHc----CCcccCCCeeEEEEEecccCCCC----HHHHHHHHHHhCCEEEcCchhhCCCCCCeEEEE--ecCCHHHH
Confidence 666543 34444566665544432011111 2234444 56789999873 2689999 55688888
Q ss_pred HHHHHhhhccc
Q psy8199 635 QHMTSAIFQTF 645 (965)
Q Consensus 635 ~~~~~~l~~~~ 645 (965)
.++++++.+.+
T Consensus 371 ~~al~~l~~~l 381 (387)
T PRK07683 371 KEGLDRLEAFL 381 (387)
T ss_pred HHHHHHHHHHH
Confidence 88888887543
|
|
| >KOG0259|consensus | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.5e-17 Score=169.60 Aligned_cols=338 Identities=15% Similarity=0.097 Sum_probs=217.3
Q ss_pred ccccccccchhccCCC--CCHHHHHHHHHHHhhc--cccccCCCCcHHHHHHHHHHHhhcCC--CCCeEEEcCChhHHHH
Q psy8199 255 RYLDAISSWWVNLFGH--SNSYINKALKNQLNKL--EHVMLSNLTHKPVIKLSEKLSSLTQY--KLGHCFYGSDGASAVE 328 (965)
Q Consensus 255 ~ylD~~~~~~~~~lGh--~~p~v~~av~~~~~~~--~~~~~~~~~~~~~~~la~~l~~~~~~--~~~~v~~~~sGseA~~ 328 (965)
.+|-+..|-. ..+|- ..++..+||.+++..+ ..|..+.+....+.+.|+++.+..+. ..+.|++|+|.++|++
T Consensus 62 ~iipl~~GDP-sv~~~~~ts~~a~~Av~~al~Sgk~N~Yaps~G~~~AR~AVAeYl~~~l~~kl~a~DV~ltsGC~qAIe 140 (447)
T KOG0259|consen 62 PILPLGHGDP-SVYPCFRTSQEAEQAVVDALRSGKGNGYAPSVGILPARRAVAEYLNRDLPNKLTADDVVLTSGCSQAIE 140 (447)
T ss_pred eeccCCCCCC-CccccccCCHHHHHHHHHHHhcCCCCCcCCccccHHHHHHHHHHhhcCCCCccCcCceEEeccchHHHH
Confidence 5555544433 22221 3678899999998764 34455556667778888887776653 3569999999999999
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEec-CCCCCCCCCCCChhHHHHHH
Q psy8199 329 VALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIIT-TPDSRNINKGNSANEIARCA 407 (965)
Q Consensus 329 ~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d 407 (965)
.|+.+..+ ++..|+...++|.-|...+....= ++.... .|+.... .|
T Consensus 141 ~~i~~LA~--------p~aNILlPrPGfp~Y~~~a~~~~l-------------EVR~ydlLPe~~we-----------ID 188 (447)
T KOG0259|consen 141 LAISSLAN--------PGANILLPRPGFPLYDTRAIYSGL-------------EVRYYDLLPEKDWE-----------ID 188 (447)
T ss_pred HHHHHhcC--------CCCceecCCCCCchHHHhhhhcCc-------------eeEeecccCcccce-----------ec
Confidence 99996643 667899999999776332222110 111111 1211111 48
Q ss_pred HHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccc-ccccccc-CCCcc
Q psy8199 408 IFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK-FFACEHA-EIWPD 485 (965)
Q Consensus 408 ~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~-~~~~~~~-~~~pD 485 (965)
++.+|+++++ .++|.||++| +|+.|.+. +.+-|++|.++|+++|+++|+||||..+-.-++ +.....+ .+.|-
T Consensus 189 L~~veal~DE--NT~AivviNP--~NPcGnVy-s~~HL~kiae~A~klgi~vIaDEVY~~~vfg~~pfvpmg~fssiVPV 263 (447)
T KOG0259|consen 189 LDGVEALADE--NTVAIVVINP--NNPCGNVY-SEDHLKKIAETAKKLGIMVIADEVYGHTVFGDKPFVPMGKFSSIVPV 263 (447)
T ss_pred hHHHHHhhcc--CeeEEEEeCC--CCCCcccc-cHHHHHHHHHHHHHhCCeEEehhhcceeecCCCCccchhhccccCce
Confidence 9999999874 4567777887 78888765 888899999999999999999999987644444 3334444 33443
Q ss_pred ee--eeccccCCCcccceeeeecH--------HHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcc---cHHH
Q psy8199 486 FL--CLSKGITGGYLPLSLVMTTD--------KIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKD---NILQ 552 (965)
Q Consensus 486 iv--t~sK~l~gG~~pig~v~~~~--------~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~---~~~~ 552 (965)
+. .+||++---+|++|+++..+ .+.+.+.. + ..-+-+.+.+-|+|.-..|+.-.++ .-..
T Consensus 264 itlggisKrW~VPGWRlGWi~~hD~~gvf~~~~~~q~~~~------~-~~~~~~p~TiiQ~AlP~IL~kTp~efF~k~~~ 336 (447)
T KOG0259|consen 264 ITLGGISKRWIVPGWRLGWIALHDPRGVFRDTKVVQGIKN------F-LDIIPGPATIIQGALPDILEKTPEEFFDKKLS 336 (447)
T ss_pred EeecccccccccCCceeeeEEEecccccccchHHHHHHHH------H-HhccCCccHhHHHHhHHHHHhChHHHHHHHHH
Confidence 33 36897644339999987643 22233322 1 1233344566666666666543221 1234
Q ss_pred HHHHHHHHHHHHHHcccCCCcee-eeeceeEEEEEEEeec----CccchhhHHHHHHHHH-HHcCcEEeecC-----CEE
Q psy8199 553 RISQDMKKITKALTSLITHPKII-NFRQKGMIWAFDVIIE----DPEQIETFSKKFFVAA-LKNELLLRPIG-----NTV 621 (965)
Q Consensus 553 ~~~~~~~~l~~~L~~l~~~~~i~-~v~g~G~~~~i~~~~~----~~~~~~~~~~~~~~~l-~~~Gi~~~~~~-----~~l 621 (965)
.++.+.+.--+.|++ .|++. .++++|.|+.+.-... +-+... .|+..| .|+.+++-|+. |++
T Consensus 337 ~lk~na~l~y~~Lk~---IP~l~cp~kPeg~mylmv~l~~s~~~~~~dD~----dFc~kL~~Eesv~~LPG~af~~~nw~ 409 (447)
T KOG0259|consen 337 FLKSNADLCYSRLKD---IPCLTCPVKPEGCMYLMVKLNLSLFPDIEDDV----DFCQKLAREESVICLPGQAFGLKNWL 409 (447)
T ss_pred HHHhhHHHHHHHHhc---CCCcccCcCCCcceEEEeccchhhhccccccH----HHHHHHhhhcceEEeccccccCCCeE
Confidence 445555555555554 58887 8899999887753310 111112 344444 47889888853 899
Q ss_pred EEeCCcccCHHHHHHHHHhhhcccc
Q psy8199 622 YLMPPYILNKNEIQHMTSAIFQTFN 646 (965)
Q Consensus 622 R~~p~~~~t~~~i~~~~~~l~~~~~ 646 (965)
|++ ++...+.++++++++++...
T Consensus 410 Ri~--i~~~~~~leea~~Rik~Fc~ 432 (447)
T KOG0259|consen 410 RIV--ITVEEEMLEEAFSRIKEFCD 432 (447)
T ss_pred EEE--EccChHHHHHHHHHHHHHHH
Confidence 999 88999999999999987443
|
|
| >PRK07392 threonine-phosphate decarboxylase; Validated | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.6e-18 Score=188.44 Aligned_cols=303 Identities=14% Similarity=0.120 Sum_probs=189.6
Q ss_pred ccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHH
Q psy8199 255 RYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMS 334 (965)
Q Consensus 255 ~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a 334 (965)
..+|+..+ .++++ .+|.+.+++.+.+.....|. .....+|.+.+++.++.+.++|++++|+++++..+++..
T Consensus 23 ~~i~l~~~--~n~~~-~~~~~~~a~~~~~~~~~~Y~-----~~~~~~Lr~aia~~~~v~~~~I~it~G~~~~i~~~~~~l 94 (360)
T PRK07392 23 AILDFSAS--INPLG-PPESVIAAIQSALSALRHYP-----DPDYRELRLALAQHHQLPPEWILPGNGAAELLTWAGREL 94 (360)
T ss_pred cEEEeCCc--CCCCC-CCHHHHHHHHHHHHHhhcCC-----CcCHHHHHHHHHHHhCcChhhEEECCCHHHHHHHHHHHh
Confidence 56887655 35566 67899999988776543332 222346667777777767889999999999999888764
Q ss_pred HHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHH
Q psy8199 335 FHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEIL 414 (965)
Q Consensus 335 ~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~ 414 (965)
.+++.|++.+++|.++...+...+. .+..+|........ ....+++++++.
T Consensus 95 ---------~~g~~vlv~~P~y~~~~~~~~~~g~-------------~~~~v~~~~~~~~~-------~~~~~~~~~~~~ 145 (360)
T PRK07392 95 ---------AQLRAVYLITPAFGDYRRALRAFGA-------------TVKELPLPLDQPSP-------GLTLRLQTLPPQ 145 (360)
T ss_pred ---------CCCCeEEEECCCcHHHHHHHHHcCC-------------eEEEEecccccCCc-------ccccCHHHHHHh
Confidence 2346899999999888544333322 22333322111000 000134444433
Q ss_pred HHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccccccc-ccccCCCccee---eec
Q psy8199 415 LKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFA-CEHAEIWPDFL---CLS 490 (965)
Q Consensus 415 l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~-~~~~~~~pDiv---t~s 490 (965)
. ......++++| +|++|.+.+ .++|.++++++++ +|+||+|..|...+.... ....+-.+.++ +||
T Consensus 146 ~---~~~~~~~l~nP--~NPTG~~~~----~~~l~~l~~~~~~-~IiDE~y~~~~~~~~~~s~~~~~~~~~~vi~i~S~S 215 (360)
T PRK07392 146 L---TPNDGLLLNNP--HNPTGKLWS----REAILPLLEQFAL-VVVDEAFMDFLPPDAEQSLIPCLAEYPNLIILRSLT 215 (360)
T ss_pred c---cCCCEEEEeCC--CCCCCCCcC----HHHHHHHHHHCCE-EEEECchhhhccCccccchHHHhhcCCCEEEEEech
Confidence 2 23345566666 999999886 4467788888885 666999998854443211 11122234444 689
Q ss_pred cccC-CCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHHHcc
Q psy8199 491 KGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN-KDNILQRISQDMKKITKALTSL 568 (965)
Q Consensus 491 K~l~-gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~-~~~~~~~~~~~~~~l~~~L~~l 568 (965)
|.++ .| +++|++++++++++.+.. ....++.+.+++.++.++|+.-. .+...+.++++.+++.+.|+.
T Consensus 216 K~~~l~G-lRiG~~v~~~~~~~~~~~--------~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~- 285 (360)
T PRK07392 216 KFYSLPG-LRLGYAIAHPDRLQRWQQ--------WRDPWPVNGLAAAAAIAALADRDFQQQTWAWLPPAREALFQGLAS- 285 (360)
T ss_pred hhhcCCc-hheeeeeCCHHHHHHHHh--------hCCCCCCCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 9887 56 899999999999888764 11346678999999988885211 111233455556666666654
Q ss_pred cCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHH-HHcCcEEeecC-------CEEEEe
Q psy8199 569 ITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAA-LKNELLLRPIG-------NTVYLM 624 (965)
Q Consensus 569 ~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l-~~~Gi~~~~~~-------~~lR~~ 624 (965)
.+++....+.|.++.+.+. . ...++.+.+ .++||.+.|+. +++|++
T Consensus 286 --~~~~~~~~~~~~fl~~~~~-~-------~~~~l~~~ll~~~gv~v~pg~~f~~~~~~~iRi~ 339 (360)
T PRK07392 286 --LPGLTPLPSAANFLLVQSQ-G-------SALQLQEKLLQQHRILIRDCLSFPELGDRYFRVA 339 (360)
T ss_pred --CCCcEECCCCCCEEEEEcC-C-------CHHHHHHHHHhhCCEEEEeCCCCCCCCCCEEEEE
Confidence 3455444555667666553 1 134566665 56799998742 589999
|
|
| >PRK05664 threonine-phosphate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.80 E-value=1e-17 Score=185.52 Aligned_cols=299 Identities=10% Similarity=0.074 Sum_probs=196.3
Q ss_pred cccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHH
Q psy8199 254 KRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKM 333 (965)
Q Consensus 254 ~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~ 333 (965)
..++|+.++. +++|...+.+.+ ..+.. |+... .+|.+.+++.++ .++|++++|+++|+..++.+
T Consensus 20 ~~~i~l~~ne--~p~~~~~~~~~~---~~~~~--------yp~~~-~~Lr~~ia~~~~--~~~I~it~Gs~~al~~~~~~ 83 (330)
T PRK05664 20 ADWLDLSTGI--APWPWPVPAIPA---DAWAR--------LPETD-DGLEAAARAYYG--APQLLPVAGSQAAIQALPRL 83 (330)
T ss_pred HHheeecCCc--CCCCCCCcccCH---HHHHh--------CCCCh-HHHHHHHHHHhC--CCCEEECcCHHHHHHHHHHc
Confidence 4678888774 677876554432 12222 22222 577888888884 58999999999999877531
Q ss_pred HHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHH
Q psy8199 334 SFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEI 413 (965)
Q Consensus 334 a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~ 413 (965)
.++++|++.+++|.++...+...+. .+..+| ++++++
T Consensus 84 ----------~~gd~v~v~~P~y~~~~~~~~~~g~-------------~~~~v~--------------------~~~~~~ 120 (330)
T PRK05664 84 ----------RAPGRVGVLSPCYAEHAHAWRRAGH-------------QVRELD--------------------EAEVEA 120 (330)
T ss_pred ----------cCCCEEEEcCCChHHHHHHHHHcCC-------------eEEEec--------------------hhhHhh
Confidence 2567899999999888443333222 222322 134555
Q ss_pred HHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCccee---eec
Q psy8199 414 LLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL---CLS 490 (965)
Q Consensus 414 ~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDiv---t~s 490 (965)
++. .....++++| +|++|.+. +.+.+++|.++|+++|+++|.||+|..+.... +...+.-.++++ +||
T Consensus 121 ~~~---~~~~v~l~nP--~NPTG~~~-s~~~l~~l~~~~~~~~~~iI~DE~y~~~~~~~---s~~~~~~~~~vi~~~SfS 191 (330)
T PRK05664 121 ALD---SLDVLVVVNP--NNPTGRRF-DPARLLAWHARLAARGGWLVVDEAFMDNTPQH---SLAACAHRPGLIVLRSFG 191 (330)
T ss_pred hhc---CCCEEEEeCC--cCCCCCcc-CHHHHHHHHHHHHhcCCEEEEECCcccCCCcc---cccccccCCCEEEEeecc
Confidence 553 1225677888 79999877 67779999999999999999999998663211 111222234444 689
Q ss_pred cccC-CCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHHHcc
Q psy8199 491 KGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN-KDNILQRISQDMKKITKALTSL 568 (965)
Q Consensus 491 K~l~-gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~-~~~~~~~~~~~~~~l~~~L~~l 568 (965)
|.++ .| +++|++++++++++.+.. ...+++.+.+++.++.++|+... .+...+.++++.+++.+.|++.
T Consensus 192 K~~gl~G-lRiG~~v~~~~l~~~~~~--------~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~r~~l~~~L~~~ 262 (330)
T PRK05664 192 KFFGLAG-ARLGFVLAEPALLRALAE--------LLGPWTVSGPTRWLAQAALADTPWQRRQRERLLAASQRLAALLRRH 262 (330)
T ss_pred ccccCCC-cceEEEEeCHHHHHHHHH--------hcCCCCCCHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 9887 56 899999999999988865 12345667888888888886321 1234566666777777777654
Q ss_pred cCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecC--CEEEEeCCcccCHHHHHHHHHhhhcc
Q psy8199 569 ITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG--NTVYLMPPYILNKNEIQHMTSAIFQT 644 (965)
Q Consensus 569 ~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~--~~lR~~p~~~~t~~~i~~~~~~l~~~ 644 (965)
++....+.++++.+.+. + ...+.+.|.++||.+++.+ +++|++. ..+.++.+++.++++..
T Consensus 263 ----~~~~~~~~~~f~~~~~~--~-------~~~~~~~l~~~gi~v~~f~~~~~iRis~--~~~~~~~~~l~~al~~~ 325 (330)
T PRK05664 263 ----GLTPAGGCALFQWVRTE--D-------AAALHEFLARRGILTRLFEQPASLRFGL--PADEADWARLDQALLAY 325 (330)
T ss_pred ----CCcccCCcceEEEEecC--C-------HHHHHHHHHHCCeEEEECCCCCeEEEEC--CCCHHHHHHHHHHHHHH
Confidence 22222233345544431 1 3467788999999998753 6899993 33667788777776543
|
|
| >TIGR03538 DapC_gpp succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.80 E-value=2e-17 Score=188.22 Aligned_cols=335 Identities=12% Similarity=0.042 Sum_probs=211.3
Q ss_pred EecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcC----CCCC-eEEEcCCh
Q psy8199 249 ITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQ----YKLG-HCFYGSDG 323 (965)
Q Consensus 249 ~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~----~~~~-~v~~~~sG 323 (965)
.+..|+.++|+..|.. .++ .++.+.+++.+.+.....|....+..+.+..+++.+.+..+ .+.+ ++++|+|+
T Consensus 23 ~~~~~~~~i~l~~~~p--~~~-~~~~~~~a~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~~~i~it~Ga 99 (393)
T TIGR03538 23 TPPASKPPIALSIGEP--KHP-TPAFVLEALRENLHGLSTYPTTKGLPELRQAIARWLERRFDLPTGVDPERHVLPVNGT 99 (393)
T ss_pred hhhcCCCeEEecCCCC--CCC-CCHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHhhCCcccCCCCceEEECCCc
Confidence 3456889999887743 444 47889999988776544455455566777888888877643 2443 79999999
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCc-eEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhH
Q psy8199 324 ASAVEVALKMSFHYWYNKGFLNK-KKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANE 402 (965)
Q Consensus 324 seA~~~Al~~a~~~~~~~g~~~~-~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (965)
++|+..++++... ++. ..|++.+++|.++...+...+ ..+..+|.....+..
T Consensus 100 ~~al~~~~~~l~~-------~gd~~~vlv~~P~y~~~~~~~~~~g-------------~~~~~v~~~~~~~~~------- 152 (393)
T TIGR03538 100 REALFAFAQAVIN-------PGQAPLVVMPNPFYQIYEGAALLAG-------------AEPYFLNCTAENGFL------- 152 (393)
T ss_pred HHHHHHHHHHHcC-------CCCcceEEecCCCCcchHHHHHhcC-------------CeEEEeeccccCCCC-------
Confidence 9999999987653 232 248889999987743222221 123334432111110
Q ss_pred HHHHHHHHHHHHHHhCCCcEEE-EEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccc--cccc---
Q psy8199 403 IARCAIFDLEILLKKNHNKIAA-IIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTG--KFFA--- 476 (965)
Q Consensus 403 ~~~~d~~~le~~l~~~~~~~aa-ii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G--~~~~--- 476 (965)
.|++++++++.+ ++.+ ++++| +|++|.+. +.+.+++|.++|++|++++|.||+|..+...+ ....
T Consensus 153 ---~d~~~l~~~~~~---~~k~i~l~~p--~NPtG~~~-s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~ 223 (393)
T TIGR03538 153 ---PDFDAVPESVWR---RCQLLFVCSP--GNPTGAVL-SLDTLKKLIELADQYGFIIASDECYSELYFDEGNPPAGLLQ 223 (393)
T ss_pred ---CCHHHHHHHHhh---cceEEEEeCC--CCCcCccc-CHHHHHHHHHHHHHCCEEEEECcchhhcccCCCCCCcCHHH
Confidence 256778777653 3344 44555 99999866 78889999999999999999999998764332 1111
Q ss_pred -ccccCC--Cccee---eeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh-ccc
Q psy8199 477 -CEHAEI--WPDFL---CLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN-KDN 549 (965)
Q Consensus 477 -~~~~~~--~pDiv---t~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~-~~~ 549 (965)
....+. .+.++ +|||.++..++++|++++++++++.+.. .....+++.+++.+.++.+++..-+ -..
T Consensus 224 ~~~~~~~~~~~~vi~i~S~SK~~~~~GlRvG~~i~~~~l~~~~~~------~~~~~~~~~~~~~q~~~~~~l~~~~~~~~ 297 (393)
T TIGR03538 224 AAAQLGRDDFRRCLVFHSLSKRSNLPGLRSGFVAGDAEILKAFLR------YRTYHGCAMPIPTQLASIAAWNDEQHVRE 297 (393)
T ss_pred hcccccccccccEEEEecchhhcCCcccceEEEecCHHHHHHHHH------HHHhhccCcCHHHHHHHHHHhcChHHHHH
Confidence 111121 23344 6899754322899999999999887764 1122345567888888887773100 011
Q ss_pred HHHHHHHHHHHHHHHHHcccCCCceee-eeceeEEEEEEEeecCccchhhHHHHHHHHHH-HcCcEEeec----------
Q psy8199 550 ILQRISQDMKKITKALTSLITHPKIIN-FRQKGMIWAFDVIIEDPEQIETFSKKFFVAAL-KNELLLRPI---------- 617 (965)
Q Consensus 550 ~~~~~~~~~~~l~~~L~~l~~~~~i~~-v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~---------- 617 (965)
..+.++++.+.+.+.|++. +.. .+..|+++++.+. .+ ..++.+.++ ++||.+.|+
T Consensus 298 ~~~~~~~~~~~~~~~L~~~-----~~~~~p~gg~f~~~~~~-~~-------~~~~~~~l~~~~gV~v~pg~~f~~~~~~~ 364 (393)
T TIGR03538 298 NRALYREKFAAVLEILGQV-----LDLELPDAGFYLWPKVP-GD-------DEAFARALYEEENVTVLPGRFLAREAEGV 364 (393)
T ss_pred HHHHHHHHHHHHHHHHHhh-----CcccCCCeeEEEEEECC-CC-------HHHHHHHHHHHCCEEEeCCccccccccCC
Confidence 2334445555555555442 122 2334556666553 11 235666765 689998653
Q ss_pred ---CCEEEEeCCcccCHHHHHHHHHhhhc
Q psy8199 618 ---GNTVYLMPPYILNKNEIQHMTSAIFQ 643 (965)
Q Consensus 618 ---~~~lR~~p~~~~t~~~i~~~~~~l~~ 643 (965)
.+++||+ +..++++++++++++.+
T Consensus 365 ~~~~~~~Ris--~~~~~~~l~~~l~~l~~ 391 (393)
T TIGR03538 365 NPGEGRVRIA--LVAPLEECVEAAERIRS 391 (393)
T ss_pred CCCCCEEEEE--ecCCHHHHHHHHHHHHH
Confidence 2579999 55678899998888754
|
This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PRK14337 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.4e-18 Score=194.86 Aligned_cols=192 Identities=14% Similarity=0.155 Sum_probs=156.6
Q ss_pred eEeEeeccCCCCCCCCCCCCCCcCCCCcccccCCCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcc----cHHHHHHHHH
Q psy8199 682 AVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDR----DLDNIENMIC 757 (965)
Q Consensus 682 ~~~i~~~s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~----~~~~~~~~~~ 757 (965)
.+.+.+ ++|||++|.||..+...+ +++.+++++|+++++.+.+.|+++|.|++........ ....+.++++
T Consensus 149 ~a~v~i-~rGC~~~CsFC~ip~~rG----~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~~~~~yg~d~~~~~~~l~~Ll~ 223 (446)
T PRK14337 149 SAFVNI-MQGCDNFCAYCIVPYTRG----RQKSRSSAAVLDECRALVDRGAREITLLGQNVNSYGQDKHGDGTSFAQLLH 223 (446)
T ss_pred EEEEEe-ccCCCCCCcCCCcccCCC----CCeeCCHHHHHHHHHHHHHCCCeEEEEEecCccccccCCCCCCccHHHHHH
Confidence 456777 899999999998764322 3456899999999999999999999998864321100 1134666777
Q ss_pred HHHhc-C---cEe-EEecCCCCHHHHHHHHHh--CCCeEeccCCC-CHHHHhcccCCCCHHHHHHHHHHHHHc--CCcee
Q psy8199 758 EVKKI-G---LET-CLTLGMLNENQAYRLKKV--GLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNV--GINIC 827 (965)
Q Consensus 758 ~i~~~-~---~~i-~~~~~~~~~e~l~~Lk~a--G~~~i~i~~es-~~~~~~~i~~~~~~~~~~~~i~~~~~~--Gi~v~ 827 (965)
.+.+. + +.+ +.++..++++.++.|++. |+.++++++|| ++++++.|+++++.+++.++++.+++. |+.+.
T Consensus 224 ~l~~~~g~~~ir~~~~~p~~i~~ell~~l~~~~~~~~~l~iglQSgsd~vLk~M~R~~t~e~~~~~v~~lr~~~~~i~i~ 303 (446)
T PRK14337 224 KVAALPGLERLRFTTPHPKDIAPEVIEAFGELPNLCPRLHLPLQSGSDRILKAMGRKYDMARYLDIVTDLRAARPDIALT 303 (446)
T ss_pred HHHhcCCCcEEEEccCCcccCCHHHHHHHHhCCcccCeEEECCCCCCHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCeEE
Confidence 66652 3 233 235667789999999994 69999999999 999999999999999999999999997 68899
Q ss_pred eeEEEec-CCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCCCCC-CCHH
Q psy8199 828 CGGIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSI-LDPL 880 (965)
Q Consensus 828 ~~~i~Gl-~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~~~~-~~~~ 880 (965)
+++|+|+ |||.+|+.++++++.+++ ++.+.++.|.|.||||.+..+. .+.+
T Consensus 304 ~d~IvG~PgET~ed~~~tl~~l~~~~--~~~~~~f~ysp~pgT~a~~~~~~v~~~ 356 (446)
T PRK14337 304 TDLIVGFPGETEEDFEQTLEAMRTVG--FASSFSFCYSDRPGTRAEMLPGKVPEE 356 (446)
T ss_pred EeEEEECCCCCHHHHHHHHHHHHhcC--CCeeEEEecCCCCCCccccCCCCCCHH
Confidence 9999999 799999999999999999 8999999999999999988643 4554
|
|
| >PRK14333 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.7e-18 Score=197.63 Aligned_cols=192 Identities=11% Similarity=0.190 Sum_probs=155.5
Q ss_pred EeEeeccCCCCCCCCCCCCCCcCCCCcccccCCCHHHHHHHHHHHHHCCCCEEEEeeccCCCC----------cccHHHH
Q psy8199 683 VLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELK----------DRDLDNI 752 (965)
Q Consensus 683 ~~i~~~s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~----------~~~~~~~ 752 (965)
..+.+ ++|||++|.||..+...+. .+.+++++|+++++.+.+.|++++.|++...... ......+
T Consensus 150 a~i~i-~~GC~~~CsFC~ip~~rG~----~rsr~~e~V~~Ei~~l~~~g~kei~l~~~~~~~yg~d~~~~~p~~~~~~~l 224 (448)
T PRK14333 150 AWVNV-IYGCNERCTYCVVPSVRGK----EQSRTPEAIRAEIEELAAQGYKEITLLGQNIDAYGRDLPGTTPEGRHQHTL 224 (448)
T ss_pred EEEEh-hcCCCCCCCCCceecccCC----CcccCHHHHHHHHHHHHHCCCcEEEEEecccchhcCCCCCccccccccccH
Confidence 45677 9999999999998754332 3457899999999999999999999976322100 0012367
Q ss_pred HHHHHHHHh-cCc---Ee-EEecCCCCHHHHHHHHHh--CCCeEeccCCC-CHHHHhcccCCCCHHHHHHHHHHHHHc--
Q psy8199 753 ENMICEVKK-IGL---ET-CLTLGMLNENQAYRLKKV--GLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNV-- 822 (965)
Q Consensus 753 ~~~~~~i~~-~~~---~i-~~~~~~~~~e~l~~Lk~a--G~~~i~i~~es-~~~~~~~i~~~~~~~~~~~~i~~~~~~-- 822 (965)
.++++.+.+ .++ .+ +.++..++++.++.|+++ |+.++++++|| ++++++.|++.++.+++.++++.++++
T Consensus 225 ~~Ll~~i~~~~~~~rir~~~~~p~~~~~eli~~~~~~~~~~~~l~igiQSgsd~vLk~m~R~~t~e~~~~~i~~lr~~~p 304 (448)
T PRK14333 225 TDLLYYIHDVEGIERIRFATSHPRYFTERLIKACAELPKVCEHFHIPFQSGDNEILKAMARGYTHEKYRRIIDKIREYMP 304 (448)
T ss_pred HHHHHHHHhcCCCeEEEECCCChhhhhHHHHHHHhcCCcccccccCCCccCCHHHHHhcCCCCCHHHHHHHHHHHHHhCC
Confidence 777777766 232 22 224566789999999996 58999999999 999999999999999999999999999
Q ss_pred CCceeeeEEEec-CCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCCCC-CCCHHH
Q psy8199 823 GINICCGGIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSS-ILDPLE 881 (965)
Q Consensus 823 Gi~v~~~~i~Gl-~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~~~-~~~~~~ 881 (965)
|+.+.+++|+|+ |||.+++.++++++++++ ++.+.++.|.|.||||++..+ ..+.+.
T Consensus 305 ~i~i~~d~IvGfPgET~edf~~tl~~l~~~~--~~~~~~~~~sp~pGT~~~~~~~~v~~~~ 363 (448)
T PRK14333 305 DASISADAIVGFPGETEAQFENTLKLVEEIG--FDQLNTAAYSPRPGTPAALWDNQLSEEV 363 (448)
T ss_pred CcEEEeeEEEECCCCCHHHHHHHHHHHHHcC--CCEEeeeeeecCCCCchhhCCCCCCHHH
Confidence 778999999999 799999999999999999 899999999999999998753 345543
|
|
| >PRK14808 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.2e-17 Score=185.12 Aligned_cols=313 Identities=12% Similarity=0.104 Sum_probs=201.1
Q ss_pred EEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcC---CCCCeEEEcCChh
Q psy8199 248 LITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQ---YKLGHCFYGSDGA 324 (965)
Q Consensus 248 ~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~---~~~~~v~~~~sGs 324 (965)
-+...|+..+|+..| .+++| .+|.+++++.+.+..... ..|+.....+|.+.+++.++ .+.++|++|+|++
T Consensus 13 ~~~~~~~~~i~l~~~--~~~~~-~p~~~~~~~~~~~~~~~~---~~Y~~~~~~~Lr~aia~~~~~~~~~~~~i~it~Ga~ 86 (335)
T PRK14808 13 PYETEKRDRTYLALN--ENPFP-FPEDLVDEVFRRLNSDTL---RIYYDSPDEELIEKILSYLDTDFLSKNNVSVGNGAD 86 (335)
T ss_pred CCCCCCCceeEecCC--CCCCC-CCHHHHHHHHHHhhhhhh---hcCCCCChHHHHHHHHHHhCCCCCCcceEEEcCCHH
Confidence 344577889998776 34566 578899999887654211 11222234455566666554 4678999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHH
Q psy8199 325 SAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIA 404 (965)
Q Consensus 325 eA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (965)
+++..+++.. +.|++.+++|.++...+...+. .+..+|......
T Consensus 87 ~~i~~~~~~~------------d~v~v~~P~y~~~~~~~~~~g~-------------~~~~v~~~~~~~----------- 130 (335)
T PRK14808 87 EIIYVMMLMF------------DRSVFFPPTYSCYRIFAKAVGA-------------KFLEVPLTKDLR----------- 130 (335)
T ss_pred HHHHHHHHHh------------CcEEECCCCHHHHHHHHHHcCC-------------eEEEecCCCcCC-----------
Confidence 9999888744 3489999999888544444332 223333321100
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCc
Q psy8199 405 RCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWP 484 (965)
Q Consensus 405 ~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~p 484 (965)
++.. .+. .....++++| +|++|.+.+ .+.+ .+++ ++++++|+||+|..|. +..+. ....-.+
T Consensus 131 ---~~~~--~~~---~~~~i~i~nP--~NPTG~~~s-~~~l---~~l~-~~~~~ii~DE~Y~~f~--~~~~~-~~~~~~~ 192 (335)
T PRK14808 131 ---IPEV--NVG---EGDVVFIPNP--NNPTGHVFE-REEI---ERIL-KTGAFVALDEAYYEFH--GESYV-DLLKKYE 192 (335)
T ss_pred ---CChh--Hcc---CCCEEEEeCC--CCCCCCCcC-HHHH---HHHH-hcCCEEEEECchhhhc--CCchH-HHHHhCC
Confidence 0011 111 2335566666 999998875 4434 4445 5899999999998873 22111 1111123
Q ss_pred cee---eeccccC-CCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc-ccHHHHHHHHHH
Q psy8199 485 DFL---CLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK-DNILQRISQDMK 559 (965)
Q Consensus 485 Div---t~sK~l~-gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~-~~~~~~~~~~~~ 559 (965)
+++ +|||.++ .| +++|++++++++++.+.. .. .+++.+.+++.++.++|+..+. .+..+.+++..+
T Consensus 193 ~vi~~~S~SK~~~l~G-lRvG~~v~~~~~~~~l~~------~~--~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~r~ 263 (335)
T PRK14808 193 NLAVIRTFSKAFSLAA-QRIGYVVSSEKFIDAYNR------VR--LPFNVSYVSQMFAKVALDHREIFEERTKFIVEERE 263 (335)
T ss_pred CEEEEEechhhccCcc-cceEEEEeCHHHHHHHHH------hc--CCCCCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 444 6899887 45 899999999999988865 11 3466678888888888863211 122344455555
Q ss_pred HHHHHHHcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecCCEEEEeCCcccCHHHHHHHHH
Q psy8199 560 KITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTS 639 (965)
Q Consensus 560 ~l~~~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~lR~~p~~~~t~~~i~~~~~ 639 (965)
++.+.|+++ ++....+.|.|+.+.+. .. ....+.+.|.++||+++...+.+|++ ..+.++.+++++
T Consensus 264 ~l~~~L~~~----g~~~~~~~g~f~~~~l~-~~------~~~~~~~~l~~~Gi~V~~~~~~~Ris---i~~~~~~~~~~~ 329 (335)
T PRK14808 264 RMKSALREM----GYRITDSRGNFVFIFME-KE------EKERLLEHLRAKNIAVRSFREGVRIT---IGKREENDMILK 329 (335)
T ss_pred HHHHHHHHC----CCEECCCCCeEEEEeCC-Cc------cHHHHHHHHHHCCeEEEECCCCeEEe---cCCHHHHHHHHH
Confidence 666666553 34555678998887764 11 12467788999999999877889999 667788888888
Q ss_pred hhhc
Q psy8199 640 AIFQ 643 (965)
Q Consensus 640 ~l~~ 643 (965)
++.+
T Consensus 330 ~l~~ 333 (335)
T PRK14808 330 ELEV 333 (335)
T ss_pred HHHh
Confidence 7753
|
|
| >PRK08175 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.6e-17 Score=187.30 Aligned_cols=339 Identities=14% Similarity=0.096 Sum_probs=213.1
Q ss_pred CcccccccccchhccCCCCCHHHHHHHHHHHhhc--cccccCCCCcHHHHHHHHHHHhhcCC--CCC-eEEEcCChhHHH
Q psy8199 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKL--EHVMLSNLTHKPVIKLSEKLSSLTQY--KLG-HCFYGSDGASAV 327 (965)
Q Consensus 253 G~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~--~~~~~~~~~~~~~~~la~~l~~~~~~--~~~-~v~~~~sGseA~ 327 (965)
|+.++|+..| .+.+..+|.+.+++.+.+... ..|....+..+.+..+++.+.+..+. ..+ ++++|+|+++++
T Consensus 28 ~~~~i~l~~g---~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~i~~t~G~~~~l 104 (395)
T PRK08175 28 GEDIIDFSMG---NPDGPTPPHIVEKLCEVAQRPDTHGYSTSRGIPRLRRAISRWYQDRYDVDIDPESEAIVTIGSKEGL 104 (395)
T ss_pred CCCeEEcCCC---CCCCCCCHHHHHHHHHHHhCCCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHHHH
Confidence 6788998776 344445777888888776432 22333344556677777777665432 345 799999999999
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHH
Q psy8199 328 EVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCA 407 (965)
Q Consensus 328 ~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 407 (965)
..++..... ++++|++.+++|..+.......+ .....+|..... .+
T Consensus 105 ~~~~~~~~~--------~gd~Vlv~~P~y~~~~~~~~~~g-------------~~~~~v~~~~~~-------------~~ 150 (395)
T PRK08175 105 AHLMLATLD--------HGDTVLVPNPSYPIHIYGAVIAG-------------AQVRSVPLVEGV-------------DF 150 (395)
T ss_pred HHHHHHhCC--------CCCEEEEcCCCCcchHHHHHHcC-------------CeEEEEecccCC-------------Cc
Confidence 888775532 56889999999977643322211 122333332110 13
Q ss_pred HHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccc-cccccCCCcce
Q psy8199 408 IFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFF-ACEHAEIWPDF 486 (965)
Q Consensus 408 ~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~-~~~~~~~~pDi 486 (965)
.+++++++++...++.+|++.. ++|++|.+. +.+.+++|.++|++||+++|+||+|..+-..+... ......-.+|.
T Consensus 151 ~~~l~~~l~~~~~~~~~v~i~~-p~NPtG~~~-~~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~~~~~~ 228 (395)
T PRK08175 151 FNELERAIRESYPKPKMMILGF-PSNPTAQCV-ELEFFEKVVALAKRYDVLVVHDLAYADIVYDGWKAPSIMQVPGAKDV 228 (395)
T ss_pred HHHHHHHHhhccCCceEEEEeC-CCCCCCCCC-CHHHHHHHHHHHHHcCcEEEEecchHhhccCCCCCcchhcCCCcccC
Confidence 5777777765434566666664 489999766 77779999999999999999999998763333211 11111111232
Q ss_pred ----eeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc--ccHHHHHHHHHHH
Q psy8199 487 ----LCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK--DNILQRISQDMKK 560 (965)
Q Consensus 487 ----vt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~--~~~~~~~~~~~~~ 560 (965)
-+|||.++..++++|++++++++++.+.. ......++.+++++.++.++|+..+. +.+.+.++++.+.
T Consensus 229 ~i~~~S~SK~~g~pGlRiG~~~~~~~l~~~~~~------~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~ 302 (395)
T PRK08175 229 AVEFFTLSKSYNMAGWRIGFMVGNPELVSALAR------IKSYHDYGTFTPLQVAAIAALEGDQQCVRDIAEQYKRRRDV 302 (395)
T ss_pred EEEEeeccccccCcchhheeeeCCHHHHHHHHH------HHhhcccCCCcHHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence 36899986433899999999999988765 12223455667788888777752111 1234445555666
Q ss_pred HHHHHHcccCCCceeeeec-eeEEEEEEEeecCccchhhHHHHHHHHHH-HcCcEEeec-------CCEEEEeCCcccCH
Q psy8199 561 ITKALTSLITHPKIINFRQ-KGMIWAFDVIIEDPEQIETFSKKFFVAAL-KNELLLRPI-------GNTVYLMPPYILNK 631 (965)
Q Consensus 561 l~~~L~~l~~~~~i~~v~g-~G~~~~i~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~-------~~~lR~~p~~~~t~ 631 (965)
+.+.|+.+ ++....+ .|+++.+++. +... ......+++.+. +.||.+.|+ .+++||+ +..++
T Consensus 303 ~~~~L~~~----~~~~~~p~~g~~i~i~l~--~~~~-~~~~~~~~~~l~~~~gv~v~p~~~f~~~~~~~lRis--~~~~~ 373 (395)
T PRK08175 303 LVKGLHEA----GWMVEMPKASMYVWAKIP--EPYA-AMGSLEFAKKLLNEAKVCVSPGIGFGDYGDTHVRFA--LIENR 373 (395)
T ss_pred HHHHHHHc----CCcccCCCEEEEEEEECC--cccC-CCCHHHHHHHHHHhCCEEEeCchhhCcCCCCeEEEE--eCCCH
Confidence 66666554 3333333 5777777765 2100 001345666655 789999874 2589998 44678
Q ss_pred HHHHHHHHhhhccc
Q psy8199 632 NEIQHMTSAIFQTF 645 (965)
Q Consensus 632 ~~i~~~~~~l~~~~ 645 (965)
+.+.++++++.+.+
T Consensus 374 ~~~~~al~~l~~~l 387 (395)
T PRK08175 374 DRIRQAIRGIKAMF 387 (395)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888876544
|
|
| >PRK03321 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.5e-18 Score=191.70 Aligned_cols=315 Identities=14% Similarity=0.136 Sum_probs=203.8
Q ss_pred ccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHH
Q psy8199 255 RYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMS 334 (965)
Q Consensus 255 ~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a 334 (965)
.++|+..+. ..+| .+|.+.+++.+.+..... ++.....++.+.++++++.+.+++++++|.++++..++...
T Consensus 23 ~~i~l~~~~--~~~~-~~~~~~~a~~~~~~~~~~-----y~~~g~~~lr~~ia~~~~~~~~~I~~~~G~~~~l~~~~~~~ 94 (352)
T PRK03321 23 GAIKLSSNE--TPFG-PLPSVRAAIARAAAGVNR-----YPDMGAVELRAALAEHLGVPPEHVAVGCGSVALCQQLVQAT 94 (352)
T ss_pred cceeccCCC--CCCC-CCHHHHHHHHHHHHhcCc-----CCCCcHHHHHHHHHHHhCcCHHHEEECCCHHHHHHHHHHHh
Confidence 478887663 3355 467899999877665432 23345677888888887666779999998888888777654
Q ss_pred HHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHH
Q psy8199 335 FHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEIL 414 (965)
Q Consensus 335 ~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~ 414 (965)
. .+++.|++..++|..+....... | .....+|.... .. .|+++++++
T Consensus 95 ~--------~~gd~Vli~~p~y~~~~~~~~~~-g------------~~~~~v~~~~~-~~-----------~~~~~l~~~ 141 (352)
T PRK03321 95 A--------GPGDEVIFAWRSFEAYPILVQVA-G------------ATPVQVPLTPD-HT-----------HDLDAMAAA 141 (352)
T ss_pred c--------CCCCEEEeCCCCHHHHHHHHHHc-C------------CEEEEccCCCC-CC-----------CCHHHHHHh
Confidence 3 25678988888875442111111 1 12233333211 11 267888887
Q ss_pred HHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHh--cCCeEEEeccccCCCccccc-ccccccCCCccee---e
Q psy8199 415 LKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNN--YNIHLIADEIAVGCGRTGKF-FACEHAEIWPDFL---C 488 (965)
Q Consensus 415 l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~--~g~llI~DEv~tg~gr~G~~-~~~~~~~~~pDiv---t 488 (965)
++. ++.+|++.. ++|++|.+.+ .+++.++|++ +++++|+||+|.+|...+.. .+.......++++ +
T Consensus 142 ~~~---~~~~v~l~~-p~NPtG~~~~----~~~l~~l~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S 213 (352)
T PRK03321 142 ITD---RTRLIFVCN-PNNPTGTVVT----PAELARFLDAVPADVLVVLDEAYVEYVRDDDVPDGLELVRDHPNVVVLRT 213 (352)
T ss_pred hcc---CCCEEEEeC-CCCCcCCCcC----HHHHHHHHHhCCCCeEEEEechHHHhccCcCCCcHHHHHhhCCCEEEEec
Confidence 753 334444444 5899998876 4455555554 69999999999877544321 1222223345666 6
Q ss_pred eccccC-CCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHH---HHHHHHHHHHHHH
Q psy8199 489 LSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNIL---QRISQDMKKITKA 564 (965)
Q Consensus 489 ~sK~l~-gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~---~~~~~~~~~l~~~ 564 (965)
|||.++ .| +++|++++++++++.+.. ...+++.+++++.++.++|+.. +.+. +++.+..+++.+.
T Consensus 214 ~SK~~g~~G-lRiG~~v~~~~~~~~~~~--------~~~~~~~s~~~q~~a~~~l~~~--~~~~~~~~~~~~~r~~~~~~ 282 (352)
T PRK03321 214 FSKAYGLAG-LRVGYAVGHPEVIAALRK--------VAVPFSVNSLAQAAAIASLAAE--DELLERVDAVVAERDRVRAA 282 (352)
T ss_pred chHHhhhHH-HhhhhhcCCHHHHHHHHH--------hcCCCCCCHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHH
Confidence 899987 45 899999999999998875 2346778999999998888522 2232 3333334455555
Q ss_pred HHcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecC-CEEEEeCCcccCHHHHHHHHHhhhc
Q psy8199 565 LTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG-NTVYLMPPYILNKNEIQHMTSAIFQ 643 (965)
Q Consensus 565 L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~-~~lR~~p~~~~t~~~i~~~~~~l~~ 643 (965)
|++. ++...++.|.++.+.+. + .+..+.+.|.++||.+.+.+ +.+|++ ..+.++.+++++++..
T Consensus 283 L~~~----~~~~~~~~g~~i~i~l~--~------~~~~~~~~l~~~gI~v~~~~~~~iRi~---~~~~~~~~~~~~al~~ 347 (352)
T PRK03321 283 LRAA----GWTVPPSQANFVWLPLG--E------RTADFAAAAAEAGVVVRPFAGEGVRVT---IGAPEENDAFLRAARA 347 (352)
T ss_pred HHHC----CCccCCCCCCEEEEeCC--C------CHHHHHHHHHHCCEEEEccCCCcEEEe---eCCHHHHHHHHHHHHH
Confidence 5443 33333456887777653 1 13467788899999999864 579999 4688889998888765
Q ss_pred c
Q psy8199 644 T 644 (965)
Q Consensus 644 ~ 644 (965)
.
T Consensus 348 ~ 348 (352)
T PRK03321 348 W 348 (352)
T ss_pred H
Confidence 4
|
|
| >TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.7e-17 Score=189.46 Aligned_cols=341 Identities=13% Similarity=0.062 Sum_probs=206.0
Q ss_pred Ccccccccccchhc--cCCCCCHHHHHHHHHHHhhc--cccccCCCCcHHHHHHHHHHHhhc-CCCCCeEEEcCChhHHH
Q psy8199 253 GKRYLDAISSWWVN--LFGHSNSYINKALKNQLNKL--EHVMLSNLTHKPVIKLSEKLSSLT-QYKLGHCFYGSDGASAV 327 (965)
Q Consensus 253 G~~ylD~~~~~~~~--~lGh~~p~v~~av~~~~~~~--~~~~~~~~~~~~~~~la~~l~~~~-~~~~~~v~~~~sGseA~ 327 (965)
|+.++++..|.... .++ .++.+.+++.+.+... ..|....+..+....+++.+.+.. ....++|++++|+++|+
T Consensus 30 ~~~~i~l~~g~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~aia~~~~~~~~~~~~~~i~~t~G~~~al 108 (401)
T TIGR01264 30 EKPMIKLSIGDPTVFGNLP-TDPEVMQAMKDSLDSGKYNGYAPTVGALSAREAIASYYHNPDGPIEADDVVLCSGCSHAI 108 (401)
T ss_pred CCCeeecCCCCCCCcCCCC-CCHHHHHHHHHHHhccCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHEEECcChHHHH
Confidence 57788888775422 233 4788999998877652 112222333444555555554321 13457899999999999
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCC-CCCCCCCChhHHHHH
Q psy8199 328 EVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDS-RNINKGNSANEIARC 406 (965)
Q Consensus 328 ~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 406 (965)
..++.+... +++.|++.+++|..+.......+ ..+..++.+.. ... .
T Consensus 109 ~~~~~~l~~--------~gd~v~i~~P~y~~~~~~~~~~g-------------~~v~~~~~~~~~~~~-----------~ 156 (401)
T TIGR01264 109 EMCIAALAN--------AGQNILVPRPGFPLYETLAESMG-------------IEVKLYNLLPDKSWE-----------I 156 (401)
T ss_pred HHHHHHhCC--------CCCEEEEeCCCChhHHHHHHHcC-------------CEEEEeecCCccCCC-----------C
Confidence 999886643 56789999999977632222211 12233332211 111 2
Q ss_pred HHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcc-
Q psy8199 407 AIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPD- 485 (965)
Q Consensus 407 d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pD- 485 (965)
|++++++.+.+ +..+|++.. ++|++|.+. +.+.+++|.++|+++|+++|+||+|..|-..+..+. ....+.++
T Consensus 157 d~~~l~~~~~~---~~~~v~~~~-p~NPtG~~~-~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~-~~~~~~~~~ 230 (401)
T TIGR01264 157 DLKQLESLIDE---KTAALIVNN-PSNPCGSVF-SRQHLEEILAVAERQCLPIIADEIYGDMVFSGATFE-PLASLSSTV 230 (401)
T ss_pred CHHHHHHHhcc---CceEEEEcC-CCCCCCCCC-CHHHHHHHHHHHHHCCCEEEEEhhhhhhccCCcccc-cHHHcCCCC
Confidence 67788877753 234444433 489999866 677899999999999999999999998754443111 11122232
Q ss_pred -ee---eeccccCCCcccceeeeecH------HHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc---ccHHH
Q psy8199 486 -FL---CLSKGITGGYLPLSLVMTTD------KIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK---DNILQ 552 (965)
Q Consensus 486 -iv---t~sK~l~gG~~pig~v~~~~------~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~---~~~~~ 552 (965)
++ +|||.++..++++|++++++ ++++.+.. . ...+++.+++++.++.+.|+...+ +...+
T Consensus 231 ~vi~~~SfSK~~~~~GlRiG~iv~~~~~~~~~~~~~~~~~------~-~~~~~~~~~~~q~a~~~~l~~~~~~~l~~~~~ 303 (401)
T TIGR01264 231 PILSCGGLAKRWLVPGWRLGWIIIHDRRGILRDIRDGLVK------L-SQRILGPCTIVQGALPSILLRTPQEYFDGTLS 303 (401)
T ss_pred cEEEEccCcccCCCccceEEEEEecCcchhHHHHHHHHHH------H-hhccCCCCcHHHHHHHHHHHhCcHHHHHHHHH
Confidence 43 68997443238999999863 34444432 1 112345678899988888853111 12344
Q ss_pred HHHHHHHHHHHHHHcccCCCceeee-eceeEEEEEEEeecCccchhhHHHHHHHHHH-HcCcEEeecC-----CEEEEeC
Q psy8199 553 RISQDMKKITKALTSLITHPKIINF-RQKGMIWAFDVIIEDPEQIETFSKKFFVAAL-KNELLLRPIG-----NTVYLMP 625 (965)
Q Consensus 553 ~~~~~~~~l~~~L~~l~~~~~i~~v-~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~~-----~~lR~~p 625 (965)
.++++.+++.+.|+++ +++..+ +..|+|+.+.+. ............+.+.++ ++||++.|+. +++|++
T Consensus 304 ~~~~~r~~l~~~L~~~---~~~~~~~p~~g~f~~~~~~-~~~~~~~~~~~~~~~~l~~~~gI~v~pg~~f~~~~~iRis- 378 (401)
T TIGR01264 304 VLESNAMLCYGALAAV---PGLRPVMPSGAMYMMVGIE-MEHFPEFKNDVEFTERLVAEQSVFCLPGSCFEYPGFFRVV- 378 (401)
T ss_pred HHHHHHHHHHHHHHhC---CCCcccCCCeeeEEEEEec-ccccCCCCCHHHHHHHHHHhCCEEEeCchhcCCCCeEEEE-
Confidence 4555555666666543 444433 445677777663 100000001335666665 7899998742 689999
Q ss_pred CcccCHHHHHHHHHhhhccc
Q psy8199 626 PYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 626 ~~~~t~~~i~~~~~~l~~~~ 645 (965)
+...++++++.++++.+.+
T Consensus 379 -~~~~~~~l~~~l~rl~~~~ 397 (401)
T TIGR01264 379 -LTVPVVMMEEACSRIQEFC 397 (401)
T ss_pred -EcCCHHHHHHHHHHHHHHH
Confidence 5567888998888876543
|
This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs. |
| >PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.2e-18 Score=193.98 Aligned_cols=194 Identities=14% Similarity=0.186 Sum_probs=153.2
Q ss_pred eEeEeeccCCCCCCCCCCCCCCcCCCCcccccCCCHHHHHHHHHHHHHCCCCEEEEeeccCCC---CcccHHHHHHHHHH
Q psy8199 682 AVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWREL---KDRDLDNIENMICE 758 (965)
Q Consensus 682 ~~~i~~~s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~---~~~~~~~~~~~~~~ 758 (965)
...+.+ ++||+++|.||..+...+. .+.+++++|+++++.+.+.|+++|.|++..... .......+.++++.
T Consensus 139 ~~~l~i-srGC~~~CsfC~~p~~~g~----~~sr~~e~Iv~Ei~~l~~~G~keI~l~g~~~~~yG~d~~~~~~~~~Ll~~ 213 (440)
T PRK14334 139 SAHLTI-MRGCNHHCTYCIVPTTRGP----EVSRHPDLILRELELLKAAGVQEVTLLGQNVNSYGVDQPGFPSFAELLRL 213 (440)
T ss_pred EEEEEe-ccCCCCCCcCCCcchhcCC----CccCCHHHHHHHHHHHHHCCCeEEEEEeccccccccCCCCcCCHHHHHHH
Confidence 456677 9999999999988753222 234789999999999999999999997732110 00011234455555
Q ss_pred HHhcCc---EeEE-ecCCCCHHHHHHHHHh--CCCeEeccCCC-CHHHHhcccCCCCHHHHHHHHHHHHHcCC--ceeee
Q psy8199 759 VKKIGL---ETCL-TLGMLNENQAYRLKKV--GLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGI--NICCG 829 (965)
Q Consensus 759 i~~~~~---~i~~-~~~~~~~e~l~~Lk~a--G~~~i~i~~es-~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi--~v~~~ 829 (965)
+.+.++ .+.. ++..++++.++.|+++ |+.++++++|| ++++++.|++.++.+++.++++.++++|. .+.+.
T Consensus 214 l~~~~i~~ir~~~~~p~~i~~ell~~l~~~~~g~~~l~igvQSgs~~vLk~m~R~~~~~~~~~~v~~lr~~~~~i~i~~d 293 (440)
T PRK14334 214 VGASGIPRVKFTTSHPMNFTDDVIAAMAETPAVCEYIHLPVQSGSDRVLRRMAREYRREKYLERIAEIREALPDVVLSTD 293 (440)
T ss_pred HHhcCCcEEEEccCCcccCCHHHHHHHHhcCcCCCeEEeccccCCHHHHHHhCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 544443 3322 5677899999999994 59999999999 99999999999999999999999999975 46789
Q ss_pred EEEec-CCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCCC-CCCCHHHH
Q psy8199 830 GIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGS-SILDPLEF 882 (965)
Q Consensus 830 ~i~Gl-~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~~-~~~~~~~~ 882 (965)
+|+|+ |||.+++.++++++.+++ ++.+.++.|.|.||||++.. ...++++.
T Consensus 294 ~IvG~PgEt~ed~~~tl~~i~~l~--~~~i~~f~ysp~pGT~~~~~~~~v~~~~~ 346 (440)
T PRK14334 294 IIVGFPGETEEDFQETLSLYDEVG--YDSAYMFIYSPRPGTPSYKHFQDLPREVK 346 (440)
T ss_pred EEEECCCCCHHHHHHHHHHHHhcC--CCEeeeeEeeCCCCChhHhccCCCCHHHH
Confidence 99999 799999999999999999 99999999999999999764 34555443
|
|
| >TIGR03402 FeS_nifS cysteine desulfurase NifS | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.4e-17 Score=188.76 Aligned_cols=333 Identities=11% Similarity=0.059 Sum_probs=205.2
Q ss_pred cccccccchhccCCCCCHHHHHHHHHHHhhccccccCCC-----CcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHH
Q psy8199 256 YLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNL-----THKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVA 330 (965)
Q Consensus 256 ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~-----~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~A 330 (965)
|||..+... .++.|.+|+.+.+........... ..+...++.+.++++++...++++|++||++|+..+
T Consensus 2 yld~aa~~~------~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~i~~t~~~t~a~~~a 75 (379)
T TIGR03402 2 YLDNNATTR------VDPEVLEAMLPYFTEYFGNPSSMHSFGGEVGKAVEEAREQVAKLLGAEPDEIIFTSGGTESDNTA 75 (379)
T ss_pred cCCCcCCCC------CCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCcHHHHHHHH
Confidence 888776533 689999999988764211110111 123456777889999987778999999999999999
Q ss_pred HHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHH
Q psy8199 331 LKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFD 410 (965)
Q Consensus 331 l~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 410 (965)
++.+.... ++++.|++....|++.......+ ......+..+|.+.. +. .|+++
T Consensus 76 l~~~~~~~-----~~~~~vv~~~~~~~s~~~~~~~~----------~~~G~~v~~v~~~~~-g~-----------~~~~~ 128 (379)
T TIGR03402 76 IKSALAAQ-----PEKRHIITTAVEHPAVLSLCQHL----------EKQGYKVTYLPVDEE-GR-----------LDLEE 128 (379)
T ss_pred HHHHHHhc-----CCCCeEEEcccccHHHHHHHHHH----------HHcCCEEEEEccCCC-Cc-----------CCHHH
Confidence 98765421 34466776666665431111000 001123444444221 11 36788
Q ss_pred HHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcceeeec
Q psy8199 411 LEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS 490 (965)
Q Consensus 411 le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~s 490 (965)
++++++ +++.+|++.. +++++|.+.| +++|.++|++||+++|+|++|+ +|.. ..+.....+|++++|
T Consensus 129 l~~~i~---~~~~lv~i~~-~~n~tG~~~~----~~~I~~l~~~~g~~vivD~~~~-~g~~----~~~~~~~~~D~~~~s 195 (379)
T TIGR03402 129 LRAAIT---DDTALVSVMW-ANNETGTIFP----IEEIGEIAKERGALFHTDAVQA-VGKI----PIDLKEMNIDMLSLS 195 (379)
T ss_pred HHHhcC---CCcEEEEEEc-ccCCeeeccc----HHHHHHHHHHcCCEEEEECccc-cccc----ccCcccCCCCEEEEc
Confidence 888885 3456677766 7899999887 7899999999999999999996 5432 223334568999998
Q ss_pred --cccCCCcccceeeeecHHHH-HhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHH
Q psy8199 491 --KGITGGYLPLSLVMTTDKIY-NSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK--DNILQRISQDMKKITKAL 565 (965)
Q Consensus 491 --K~l~gG~~pig~v~~~~~i~-~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~--~~~~~~~~~~~~~l~~~L 565 (965)
| +.|. ..+|+++.+++.. .....++........+ +.|..+..+..++++.+.+ +...++.+++.+++++.|
T Consensus 196 ~~K-~~gp-~G~g~l~v~~~~~~~p~~~g~~~~~~~~~g--t~~~~~~~~l~~al~~~~~~~~~~~~~~~~l~~~l~~~l 271 (379)
T TIGR03402 196 GHK-LHGP-KGVGALYIRKGTRFRPLLRGGHQERGRRAG--TENVPGIVGLGKAAELATEHLEEENTRVRALRDRLEAGL 271 (379)
T ss_pred HHH-cCCC-CceEEEEECCCCCCCCcccCCccCCCcCCC--CccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 9 6553 4688888776541 1111101100011122 3456666777777776643 223456666666777666
Q ss_pred HcccCCCceeeeec---e-eEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec------------------------
Q psy8199 566 TSLITHPKIINFRQ---K-GMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI------------------------ 617 (965)
Q Consensus 566 ~~l~~~~~i~~v~g---~-G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~------------------------ 617 (965)
.+ ..+++..... . ..++.+.+. .. ....+...|.++||.++.+
T Consensus 272 ~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~-----~~~~~~~~l~~~gI~v~~g~~c~~~~~~~~~~~~~lg~~~~~~ 342 (379)
T TIGR03402 272 LA--RIPDARLNGDPTKRLPNTVNISFE--YI-----EGEAILLLLDMEGICASSGSACTSGSLEPSHVLRAMGVPHTAA 342 (379)
T ss_pred Hh--hCCCEEEeCCCccCCCCEEEEEec--CC-----CHHHHHHhhccCCEEEEchhhcCCCCCCcCHHHHHcCCChhhc
Confidence 53 1233321111 1 123333332 10 1235777788899998742
Q ss_pred CCEEEEeCCcccCHHHHHHHHHhhhccccc
Q psy8199 618 GNTVYLMPPYILNKNEIQHMTSAIFQTFNE 647 (965)
Q Consensus 618 ~~~lR~~p~~~~t~~~i~~~~~~l~~~~~~ 647 (965)
.+.+|++++...|++||+++++.+.+.+..
T Consensus 343 ~~~vR~S~~~~~t~~di~~~~~~l~~~~~~ 372 (379)
T TIGR03402 343 HGSIRFSLSRYNTEEDIDYVLEVLPPIIAR 372 (379)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHHHH
Confidence 257999999999999999999998875543
|
Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403. |
| >COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.3e-17 Score=169.85 Aligned_cols=324 Identities=14% Similarity=0.144 Sum_probs=220.0
Q ss_pred CCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCC--CCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceE
Q psy8199 271 SNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQY--KLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKK 348 (965)
Q Consensus 271 ~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~--~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~ 348 (965)
.+|+|.+|+++.++.+... .+....+....+.....+.... ..+.++|+++.--++..+|+.... +++.
T Consensus 39 ~pp~i~~Al~~rvdhGvfG-Y~~~~~~~~~ai~~w~~~r~~~~i~~e~i~~~p~VVpgi~~~I~~~T~--------~gd~ 109 (388)
T COG1168 39 TPPEIIEALRERVDHGVFG-YPYGSDELYAAIAHWFKQRHQWEIKPEWIVFVPGVVPGISLAIRALTK--------PGDG 109 (388)
T ss_pred CCHHHHHHHHHHHhcCCCC-CCCCCHHHHHHHHHHHHHhcCCCCCcceEEEcCcchHhHHHHHHHhCc--------CCCe
Confidence 5799999999999886322 2333444677888888877653 456899999999999999988754 6788
Q ss_pred EEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCC--CCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEE
Q psy8199 349 FICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPD--SRNINKGNSANEIARCAIFDLEILLKKNHNKIAAII 426 (965)
Q Consensus 349 vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii 426 (965)
|++..|.||.. ..+....++. +...|.-. .... .|+++||+++.+ ......|+
T Consensus 110 Vvi~tPvY~PF-~~~i~~n~R~------------~i~~pL~~~~~~y~-----------iD~~~LE~~~~~-~~vkl~iL 164 (388)
T COG1168 110 VVIQTPVYPPF-YNAIKLNGRK------------VIENPLVEDDGRYE-----------IDFDALEKAFVD-ERVKLFIL 164 (388)
T ss_pred eEecCCCchHH-HHHHhhcCcE------------EEeccccccCCcEE-----------ecHHHHHHHHhc-CCccEEEE
Confidence 99999999876 2333333322 22222211 1111 389999999974 22357888
Q ss_pred EccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccc-ccccccccC--CCcceeee---ccccCCCcccc
Q psy8199 427 IEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTG-KFFACEHAE--IWPDFLCL---SKGITGGYLPL 500 (965)
Q Consensus 427 ~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G-~~~~~~~~~--~~pDivt~---sK~l~gG~~pi 500 (965)
|+| +|++|.+ ++.+.|.+|.+||.+||+++|+||++..+-..| +++.+...+ ..-..+|+ ||++.-.++..
T Consensus 165 CnP--HNP~Grv-wt~eeL~~i~elc~kh~v~VISDEIHaDlv~~g~~h~~~a~ls~~~a~~~it~~saSKtFNlaGL~~ 241 (388)
T COG1168 165 CNP--HNPTGRV-WTKEELRKIAELCLRHGVRVISDEIHADLVLGGHKHIPFASLSERFADNSITLTSASKTFNLAGLKC 241 (388)
T ss_pred eCC--CCCCCcc-ccHHHHHHHHHHHHHcCCEEEeecccccccccCCCccchhhcChhhhcceEEEeeccccccchhhhh
Confidence 888 8888865 599999999999999999999999999886667 444443322 22233433 78764322788
Q ss_pred eeeee-cHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHcccCCCceeee
Q psy8199 501 SLVMT-TDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK--DNILQRISQDMKKITKALTSLITHPKIINF 577 (965)
Q Consensus 501 g~v~~-~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v 577 (965)
++++. ++++-+.+.+. ....+..+.|.+++.|..++.+.-+. +.+.+.++.+.+++.+.+.+ ..|.+...
T Consensus 242 a~~Ii~n~~lr~~~~~~-----l~~~~~~~~n~lg~~A~~aAY~~G~~WLd~L~~yl~~N~~~~~~~l~~--~~P~v~v~ 314 (388)
T COG1168 242 AYIIISNRELRAKFLKR-----LKRNGLHGPSALGIIATEAAYNQGEPWLDELLEYLKDNRDYVADFLNK--HLPGVKVT 314 (388)
T ss_pred eeEEecCHHHHHHHHHH-----HHHhcCCCCchHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHh--hCCCcEEe
Confidence 87665 45553444331 12234456789999999999975432 45778888889998888865 35788888
Q ss_pred eceeEEEEE-EEeecCccchhhHHHHHHHHHH-HcCcEEee------cC-CEEEEeCCcccCHHHHHHHHHhhhccc
Q psy8199 578 RQKGMIWAF-DVIIEDPEQIETFSKKFFVAAL-KNELLLRP------IG-NTVYLMPPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 578 ~g~G~~~~i-~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~------~~-~~lR~~p~~~~t~~~i~~~~~~l~~~~ 645 (965)
.++|..+.+ ++. .-+-+ ..++.+.|+ +.+|.+.+ .| +++|+. ++.+.+.++++++++..++
T Consensus 315 ~p~gTYL~WLD~r-~l~l~----d~~l~~~ll~~akVal~~G~~FG~~g~gf~RlN--~acpr~~L~eal~ri~~al 384 (388)
T COG1168 315 EPQGTYLAWLDCR-ELGLD----DSELAEFLLEEAKVALSPGSTFGEEGSGFVRLN--FACPRAILEEALERLKRAL 384 (388)
T ss_pred cCCCceeeeeecc-ccCCC----hHHHHHHHHHhhcEeccCCCccCcCCCceEEEe--cCCCHHHHHHHHHHHHHHH
Confidence 899986554 443 11111 123444444 45666654 23 789999 8899999999999887554
|
|
| >PRK05387 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=9.1e-18 Score=188.60 Aligned_cols=316 Identities=13% Similarity=0.129 Sum_probs=200.5
Q ss_pred CcccccccccchhccCCCCCHHHHHHHHHHHhh-ccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHH
Q psy8199 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNK-LEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVAL 331 (965)
Q Consensus 253 G~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~-~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al 331 (965)
++.++|+.+|.. +++ .+|.+.+++.+.+.. ..+ |+.....+|.+.++++++.+.++|++|+|+++|+..++
T Consensus 23 ~~~~i~l~~~~~--~~~-~~~~~~~a~~~~~~~~~~~-----y~~~~~~~lr~aia~~~~~~~~~I~it~G~~~al~~~~ 94 (353)
T PRK05387 23 LAKLIKLNTNEN--PYP-PSPKVLEAIRAALGDDLRL-----YPDPNADALRQAIAAYYGLDPEQVFVGNGSDEVLAHAF 94 (353)
T ss_pred ccceeeccCCCC--CCC-CCHHHHHHHHHHhhhhhhc-----CCCCcHHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHH
Confidence 356889887743 455 378899999887654 222 23333467778888877777789999999999999999
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHH
Q psy8199 332 KMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDL 411 (965)
Q Consensus 332 ~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l 411 (965)
+...+ +++.|++.+++|..+.......+ ..+..+|..... . .|++++
T Consensus 95 ~~l~~--------~gd~vlv~~P~y~~~~~~~~~~g-------------~~~~~v~~~~~~-~-----------~d~~~l 141 (353)
T PRK05387 95 LAFFN--------HDRPLLFPDITYSFYPVYAGLYG-------------IPYEEIPLDDDF-S-----------IDVEDY 141 (353)
T ss_pred HHhcC--------CCCEEEEeCCCHHHHHHHHHHcC-------------CEEEEeecCCCC-C-----------CCHHHH
Confidence 87643 56889999999966632221111 123333332111 1 245555
Q ss_pred HHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhc-CCeEEEeccccCCCcccccccccccCCCccee---
Q psy8199 412 EILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNY-NIHLIADEIAVGCGRTGKFFACEHAEIWPDFL--- 487 (965)
Q Consensus 412 e~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~-g~llI~DEv~tg~gr~G~~~~~~~~~~~pDiv--- 487 (965)
++ .....++++| +|++|.+.+ . +++.++++.+ ++++|+||+|..|+. .. .....+..++++
T Consensus 142 ~~------~~~~v~~~~P--~NPtG~~~~-~---~~~~~l~~~~~~~~livDe~y~~~~~--~~-~~~~~~~~~~~i~~~ 206 (353)
T PRK05387 142 LR------PNGGIIFPNP--NAPTGIALP-L---AEIERILAANPDSVVVIDEAYVDFGG--ES-AIPLIDRYPNLLVVQ 206 (353)
T ss_pred Hh------cCCEEEEeCC--CCCCCCCCC-H---HHHHHHHHhCCCcEEEEeCcccccCC--cc-hHHHHhhCCCEEEEE
Confidence 42 1234566677 999998875 3 4444444443 999999999987742 11 111112223333
Q ss_pred eeccccC-CCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHH
Q psy8199 488 CLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN-KDNILQRISQDMKKITKAL 565 (965)
Q Consensus 488 t~sK~l~-gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~-~~~~~~~~~~~~~~l~~~L 565 (965)
+|||.++ .| +++|++++++++++.+..-. ....+++.+.+++.++.++|+..+ -++..+++.++.+++.+.|
T Consensus 207 S~SK~~~~~G-lR~G~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L 280 (353)
T PRK05387 207 TFSKSRSLAG-LRVGFAIGHPELIEALNRVK-----NSFNSYPLDRLAQAGAIAAIEDEAYFEETRAKVIATRERLVEEL 280 (353)
T ss_pred ehhHhhcchh-hhceeeecCHHHHHHHHHhh-----ccCCCCCcCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899886 45 89999999999988876510 111355678889988888884211 1234555666666677766
Q ss_pred HcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecC-----CEEEEeCCcccCHHHHHHHHHh
Q psy8199 566 TSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG-----NTVYLMPPYILNKNEIQHMTSA 640 (965)
Q Consensus 566 ~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~-----~~lR~~p~~~~t~~~i~~~~~~ 640 (965)
++. ++...++.|.++.+.+. . .....+.+.|.++||.+++.+ +++|++. .+.+++++++++
T Consensus 281 ~~~----g~~~~~~~~~~~~~~~~--~-----~~~~~~~~~l~~~gi~v~~~~~~~~~~~iRis~---~~~~~~~~~~~~ 346 (353)
T PRK05387 281 EAL----GFEVLPSKANFVFARHP--S-----HDAAELAAKLRERGIIVRHFNKPRIDQFLRITI---GTDEEMEALVDA 346 (353)
T ss_pred HHC----CCeECCCcCcEEEEECC--C-----CCHHHHHHHHHHCCEEEEECCCCCCCCeEEEEe---CCHHHHHHHHHH
Confidence 654 33333445556555442 1 113467788899999997542 5899993 367889998888
Q ss_pred hhcc
Q psy8199 641 IFQT 644 (965)
Q Consensus 641 l~~~ 644 (965)
+.+.
T Consensus 347 L~~~ 350 (353)
T PRK05387 347 LKEI 350 (353)
T ss_pred HHHH
Confidence 7653
|
|
| >PRK07568 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=3e-17 Score=187.51 Aligned_cols=334 Identities=15% Similarity=0.146 Sum_probs=205.6
Q ss_pred CcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhh-cCCCCCeEEEcCChhHHHHHHH
Q psy8199 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSL-TQYKLGHCFYGSDGASAVEVAL 331 (965)
Q Consensus 253 G~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~-~~~~~~~v~~~~sGseA~~~Al 331 (965)
|..++|+..|.. .++ .++.+.+++.+.......|....+..+.+..+++.+... .+.+.++|++++||++|+..++
T Consensus 29 ~~~~i~l~~~~~--~~~-~~~~~~~a~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~i~~t~G~~~al~~~~ 105 (397)
T PRK07568 29 GIKVYHLNIGQP--DIK-TPEVFFEAIKNYDEEVLAYSHSQGIPELREAFAKYYKKWGIDVEPDEILITNGGSEAILFAM 105 (397)
T ss_pred CCCEEEecCCCC--CCC-CCHHHHHHHHHHhcCCcCcCCCCCCHHHHHHHHHHHHHhCCCCCcceEEEcCChHHHHHHHH
Confidence 445777766643 223 367888888766544323333334455556666655421 1235679999999999999988
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHH
Q psy8199 332 KMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDL 411 (965)
Q Consensus 332 ~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l 411 (965)
.... .++++|++.+++|..+....... ...+..++.....+ +...++++|
T Consensus 106 ~~l~--------~~gd~Vl~~~p~y~~~~~~~~~~-------------g~~~~~v~~~~~~g---------~~~~~~~~l 155 (397)
T PRK07568 106 MAIC--------DPGDEILVPEPFYANYNGFATSA-------------GVKIVPVTTKIEEG---------FHLPSKEEI 155 (397)
T ss_pred HHhc--------CCCCEEEEecCCCccHHHHHHHc-------------CCEEEEeecCcccC---------CCCCCHHHH
Confidence 7653 25678999999887653221111 11223333211000 000145778
Q ss_pred HHHHHhCCCcEEEE-EEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccccc-ccc-cccCCCccee-
Q psy8199 412 EILLKKNHNKIAAI-IIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKF-FAC-EHAEIWPDFL- 487 (965)
Q Consensus 412 e~~l~~~~~~~aai-i~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~-~~~-~~~~~~pDiv- 487 (965)
++++.+ ++.+| ++.| +|++|.+. +.+.+++|.++|+++|+++|+||+|.+|...+.. ... ...+..++++
T Consensus 156 ~~~~~~---~~~~v~i~~p--~NPtG~~~-~~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~s~~~~~~~~~~~i~ 229 (397)
T PRK07568 156 EKLITP---KTKAILISNP--GNPTGVVY-TKEELEMLAEIAKKHDLFLISDEVYREFVYDGLKYTSALSLEGLEDRVII 229 (397)
T ss_pred HHhcCc---cceEEEEECC--CCCCCccC-CHHHHHHHHHHHHHCCcEEEEeccchhcccCCCCccChhhcCCCcCCEEE
Confidence 777742 34445 4555 88899765 6777999999999999999999999988655532 122 2223334555
Q ss_pred --eeccccCC-Ccccceeeeec-HHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHH
Q psy8199 488 --CLSKGITG-GYLPLSLVMTT-DKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK--DNILQRISQDMKKI 561 (965)
Q Consensus 488 --t~sK~l~g-G~~pig~v~~~-~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~--~~~~~~~~~~~~~l 561 (965)
+|||.++. | +++|+++++ +++++.+.. . ...+++.+++++.++.++|+..++ +.+.+.++++.+.+
T Consensus 230 ~~S~SK~~~~~G-~R~G~~~~~~~~~~~~~~~------~-~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l 301 (397)
T PRK07568 230 IDSVSKRYSACG-ARIGCLISKNKELIAAAMK------L-CQARLSPPTLEQIGAAALLDTPESYFDEVREEYKKRRDIL 301 (397)
T ss_pred EecchhhccCCC-cceEEEecCCHHHHHHHHH------H-hhccCCCCcHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHH
Confidence 68999875 5 899999984 678776654 1 112456778888888888753111 12344455566666
Q ss_pred HHHHHcccCCCceeeeeceeEE-EEEEEeecCccchhhHHHHHHHHHHH------cCcEEeec----------CCEEEEe
Q psy8199 562 TKALTSLITHPKIINFRQKGMI-WAFDVIIEDPEQIETFSKKFFVAALK------NELLLRPI----------GNTVYLM 624 (965)
Q Consensus 562 ~~~L~~l~~~~~i~~v~g~G~~-~~i~~~~~~~~~~~~~~~~~~~~l~~------~Gi~~~~~----------~~~lR~~ 624 (965)
.+.|+++ +++....+.|.+ +.+.+. . . ....+.+.+.+ .||.+.|+ .+++|++
T Consensus 302 ~~~L~~~---~~~~~~~p~g~~~~~~~l~--~-~----~~~~~~~~l~~~~~~~~~gv~v~pg~~f~~~~~~~~~~iRls 371 (397)
T PRK07568 302 YEELNKI---PGVVCEKPKGAFYIIAKLP--V-D----DAEDFAKWLLTDFNYNGETVMVAPASGFYATPGLGKNEIRIA 371 (397)
T ss_pred HHHHhcC---CCceecCCCcceEEEEecC--C-C----CHHHHHHHHHhhcccccceEEEeCchHhcCCCCCCCCeEEEE
Confidence 6666543 445545556655 455553 1 1 13345566654 69998873 1589999
Q ss_pred CCcccCHHHHHHHHHhhhccc
Q psy8199 625 PPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 625 p~~~~t~~~i~~~~~~l~~~~ 645 (965)
+..+.++++++++++.+.+
T Consensus 372 --~~~~~~~~~~~~~~l~~~l 390 (397)
T PRK07568 372 --YVLNEEDLKRAMEILKEAL 390 (397)
T ss_pred --EeCCHHHHHHHHHHHHHHH
Confidence 5567899999998887544
|
|
| >PRK13520 L-tyrosine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.3e-17 Score=186.83 Aligned_cols=320 Identities=13% Similarity=0.051 Sum_probs=201.9
Q ss_pred CCCHHHHHHHHHHHhhcccccc-CCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceE
Q psy8199 270 HSNSYINKALKNQLNKLEHVML-SNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKK 348 (965)
Q Consensus 270 h~~p~v~~av~~~~~~~~~~~~-~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~ 348 (965)
|.+|++++++.+++........ .........++++.++++++...+.+++++||++|+..+++.++... ..++++
T Consensus 31 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~~~~ggt~a~~~a~~~~~~~~----~~~~~~ 106 (371)
T PRK13520 31 EPHPIARKAHEMFLETNLGDPGLFPGTAKLEEEAVEMLGELLHLPDAYGYITSGGTEANIQAVRAARNLA----KAEKPN 106 (371)
T ss_pred CchHHHHHHHHHHHhcCCCCcccCccHHHHHHHHHHHHHHHhCCCCCCeEEecCcHHHHHHHHHHHHhhc----cCCCce
Confidence 4789999999998865311111 11223334788899999987555578999999999999999886531 113567
Q ss_pred EEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEc
Q psy8199 349 FICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIE 428 (965)
Q Consensus 349 vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~e 428 (965)
|++.+.++..+...+ ......+..+|.+... ..|+++|++++++ .....+++.
T Consensus 107 vl~~~~~h~s~~~~~-------------~~~g~~~~~v~~~~~~------------~~d~~~l~~~i~~--~~~~vi~~~ 159 (371)
T PRK13520 107 IVVPESAHFSFDKAA-------------DMLGVELRRAPLDDDY------------RVDVKAVEDLIDD--NTIGIVGIA 159 (371)
T ss_pred EEecCcchHHHHHHH-------------HHcCceEEEecCCCCC------------cCCHHHHHHHHhh--CCEEEEEEc
Confidence 888876654331111 1111234445543211 1378999998863 222333344
Q ss_pred cccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCC----cccccccccccCCCcceeeec--cccCCCccccee
Q psy8199 429 PLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCG----RTGKFFACEHAEIWPDFLCLS--KGITGGYLPLSL 502 (965)
Q Consensus 429 p~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~g----r~G~~~~~~~~~~~pDivt~s--K~l~gG~~pig~ 502 (965)
+ ++++|.+.| +++|.++|++||+++|+||+|+++. +.+..+..... ..|.+++| |.+.+| +|+|+
T Consensus 160 ~--~~~tG~~~~----l~~I~~l~~~~g~~livD~a~~~~~~~~~~~~~~~~~~~~--~vd~~~~s~~K~~~a~-~~~G~ 230 (371)
T PRK13520 160 G--TTELGQVDP----IPELSKIALENGIFLHVDAAFGGFVIPFLDDPPNFDFSLP--GVDSITIDPHKMGLAP-IPAGG 230 (371)
T ss_pred C--CcCCcccCC----HHHHHHHHHHcCCCEEEEecchhHHHHhhcCCCCccccCC--CCceEEECCccccCcc-CCceE
Confidence 4 678898887 9999999999999999999998652 11111122212 34666653 533334 68987
Q ss_pred eee-cHHHHHhhhccCCc----ccccccCCCCCCHHHHHHHHHHHHHHhccc---HHHHHHHHHHHHHHHHHcccCCCce
Q psy8199 503 VMT-TDKIYNSIYYKNNI----NIFLHSHSYSGNPLACCAALATLEIFNKDN---ILQRISQDMKKITKALTSLITHPKI 574 (965)
Q Consensus 503 v~~-~~~i~~~~~~~~~~----~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~---~~~~~~~~~~~l~~~L~~l~~~~~i 574 (965)
++. ++++++.+....+. ..+.+.+|. ++..++++.++|+.+.+++ ..++..++.+++.+.|+++ ++
T Consensus 231 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~gt~--~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~----g~ 304 (371)
T PRK13520 231 ILFRDESYLDALAVDTPYLTSKKQATLTGTR--SGAGVAATYAVMKYLGREGYRKVVERCMENTRWLAEELKER----GF 304 (371)
T ss_pred EEEcCHHHHHhhcccCccccCCCCcceEeec--cChHHHHHHHHHhhhcHhHHHHHHHHHHHHHHHHHHHHHhC----CC
Confidence 775 55577665421000 001112233 3345777888888765443 6677788888888888765 23
Q ss_pred e-eeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecC--CEEEEeCCcccCHHHHHHHHHhhhcc
Q psy8199 575 I-NFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG--NTVYLMPPYILNKNEIQHMTSAIFQT 644 (965)
Q Consensus 575 ~-~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~--~~lR~~p~~~~t~~~i~~~~~~l~~~ 644 (965)
. .+.+...++.+.+. + ...+.+.|.++||.+.+.. +.+|++++..+++++++.+++.+.+.
T Consensus 305 ~~~~~~~~~~v~~~~~--~-------~~~v~~~L~~~gi~v~~~~~~~~iRis~~~~~t~edi~~~~~~l~~~ 368 (371)
T PRK13520 305 EPVIEPVLNIVAFDDP--N-------PDEVREKLRERGWRVSVTRCPEALRIVCMPHVTREHIENFLEDLKEV 368 (371)
T ss_pred EEecCCCceEEEEecC--C-------HHHHHHHHHHCCceeccCCCCCEEEEEEECCCCHHHHHHHHHHHHHH
Confidence 2 23344556655542 1 3467788999999987653 67999988889999999999988754
|
|
| >PRK07337 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.5e-17 Score=187.16 Aligned_cols=336 Identities=13% Similarity=0.055 Sum_probs=209.1
Q ss_pred CcccccccccchhccCCCCCHHHHHHHHHHHhh-ccccccCCCCcHHHHHHHHHHHhhcC--CCCCeEEEcCChhHHHHH
Q psy8199 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNK-LEHVMLSNLTHKPVIKLSEKLSSLTQ--YKLGHCFYGSDGASAVEV 329 (965)
Q Consensus 253 G~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~-~~~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~~~sGseA~~~ 329 (965)
|..++|+..+.. .++ .+|.+.+++.+.+.. ...|....+..+.+..+++.+.+..+ ...+++++++|+++|+..
T Consensus 29 ~~~~i~l~~~~~--~~~-~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~t~G~~~al~~ 105 (388)
T PRK07337 29 GRDIIHMGIGEP--DFT-APEPVVEAAARALRRGVTQYTSALGLAPLREAIAAWYARRFGLDVAPERIVVTAGASAALLL 105 (388)
T ss_pred CCCEEEeCCcCC--CCC-CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCChHhEEEecCcHHHHHH
Confidence 445677766643 233 368889999887754 22233333445666777777765544 256789999999999998
Q ss_pred HHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCC-CCCCCCCChhHHHHHHH
Q psy8199 330 ALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDS-RNINKGNSANEIARCAI 408 (965)
Q Consensus 330 Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~ 408 (965)
++..... +++.|++.+++|.++.......+. .+..+|.... .+. .|+
T Consensus 106 ~~~~l~~--------~gd~Vlv~~p~y~~~~~~~~~~g~-------------~~~~~~~~~~~~~~-----------~~~ 153 (388)
T PRK07337 106 ACLALVE--------RGDEVLMPDPSYPCNRHFVAAAEG-------------RPVLVPSGPAERFQ-----------LTA 153 (388)
T ss_pred HHHHhcC--------CCCEEEEeCCCchhhHHHHHHcCC-------------EEEEeecCCccCCc-----------CCH
Confidence 8876532 568899999999876332222111 2233333210 111 256
Q ss_pred HHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCccee-
Q psy8199 409 FDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL- 487 (965)
Q Consensus 409 ~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDiv- 487 (965)
+++++.+.. ...+.+++.| +|++|.+. +.+.+++|.++|++||+++|+||+|.+|...+..... ....++++
T Consensus 154 ~~l~~~~~~--~~~~v~l~~p--~NPtG~~~-~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~--~~~~~~vi~ 226 (388)
T PRK07337 154 ADVEAAWGE--RTRGVLLASP--SNPTGTSI-APDELRRIVEAVRARGGFTIVDEIYQGLSYDAAPVSA--LSLGDDVIT 226 (388)
T ss_pred HHHHhhcCc--cceEEEEECC--CCCCCcCc-CHHHHHHHHHHHHHCCCEEEEeccccccccCCCCcCh--hhccCCEEE
Confidence 788877752 3344455555 88999766 6778999999999999999999999887544432111 12335655
Q ss_pred --eeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh---cccHHHHHHHHHHHHH
Q psy8199 488 --CLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN---KDNILQRISQDMKKIT 562 (965)
Q Consensus 488 --t~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~---~~~~~~~~~~~~~~l~ 562 (965)
+|||.++..++++|++++++++++.+.. .......+.+++++.++.++++.-. -....+.++++.+++.
T Consensus 227 ~~S~SK~~~~~G~RiG~~~~~~~l~~~l~~------~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~ 300 (388)
T PRK07337 227 INSFSKYFNMTGWRLGWLVVPEALVGTFEK------LAQNLFICASALAQHAALACFEPDTLAIYERRRAEFKRRRDFIV 300 (388)
T ss_pred EEechhhcCCchhheeeeecCHHHHHHHHH------HHHHhccCCChHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHH
Confidence 5799886322899999999998887764 1222334567888888877774110 0123444555666666
Q ss_pred HHHHcccCCCcee-ee-eceeEEEEEEEeecCccchhhHHHHHHHH-HHHcCcEEeec--------CCEEEEeCCcccCH
Q psy8199 563 KALTSLITHPKII-NF-RQKGMIWAFDVIIEDPEQIETFSKKFFVA-ALKNELLLRPI--------GNTVYLMPPYILNK 631 (965)
Q Consensus 563 ~~L~~l~~~~~i~-~v-~g~G~~~~i~~~~~~~~~~~~~~~~~~~~-l~~~Gi~~~~~--------~~~lR~~p~~~~t~ 631 (965)
+.|+++ ++. .+ +..|+++++++. ............+.+. +.++||.+.|+ .+++|++ +..++
T Consensus 301 ~~L~~~----~~~~~~~p~~g~f~~~~~~-~~~~~~~~~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~Ri~--~~~~~ 373 (388)
T PRK07337 301 PALESL----GFKVPVMPDGAFYVYADCR-GVAHPAAGDSAALTQAMLHDAGVVLVPGRDFGPHAPRDYIRLS--YATSM 373 (388)
T ss_pred HHHHhc----CCccccCCCeeEEEEEecc-cccCCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCCEEEEE--ecCCH
Confidence 666553 222 12 334667777764 1000000113356655 45789999763 2589999 45578
Q ss_pred HHHHHHHHhhhc
Q psy8199 632 NEIQHMTSAIFQ 643 (965)
Q Consensus 632 ~~i~~~~~~l~~ 643 (965)
+.+.+.++++.+
T Consensus 374 ~~l~~~l~rl~~ 385 (388)
T PRK07337 374 SRLEEAVARLGK 385 (388)
T ss_pred HHHHHHHHHHHH
Confidence 888888887764
|
|
| >PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.7e-17 Score=187.33 Aligned_cols=333 Identities=14% Similarity=0.131 Sum_probs=207.8
Q ss_pred ccccccccchhccCCCCCHHHHHHHHHHHh-hc-cccccCCCCcHHHHHHHHHHHhhcC------CCCC-eEEEcCChhH
Q psy8199 255 RYLDAISSWWVNLFGHSNSYINKALKNQLN-KL-EHVMLSNLTHKPVIKLSEKLSSLTQ------YKLG-HCFYGSDGAS 325 (965)
Q Consensus 255 ~ylD~~~~~~~~~lGh~~p~v~~av~~~~~-~~-~~~~~~~~~~~~~~~la~~l~~~~~------~~~~-~v~~~~sGse 325 (965)
+.||+.++ ...+++++|.+.+++.+..+ .. ........+.....+|.+.++++++ .+.+ .+++++|..+
T Consensus 2 ~~I~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~~~~G~~~ 79 (363)
T PF00155_consen 2 DVINLGSN--APLLLSQNPPPPAAIKAAIRGAATSSSFLGYPPPQGYPELREAIADFLGRRYGVPVDPEANILVTSGAQA 79 (363)
T ss_dssp TEEESSSS--STSSTTSSHHHHHHHHHHHHHHHHHTGCTSSTCTTHHHHHHHHHHHHHHHHHTHHTTGGEGEEEESHHHH
T ss_pred CEEEEECC--CCCCcccccchHHHHHHHHHHhhcccccccCCCchhhHHHHHHHHHHhhhccCcccccceEEEEeccccc
Confidence 46787776 34455566666666655443 11 1111122233345666666666654 4566 7777776666
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHH
Q psy8199 326 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIAR 405 (965)
Q Consensus 326 A~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (965)
++..++.+... .+++.|++.+++|.++.......+. .+..+|....... .
T Consensus 80 ~~~~~~~~~~~-------~~~~~vlv~~P~y~~~~~~~~~~g~-------------~~~~~~~~~~~~~----------~ 129 (363)
T PF00155_consen 80 ALFLLLRLLKI-------NPGDTVLVPDPCYPSYIEAARLLGA-------------EVIPVPLDSENDF----------H 129 (363)
T ss_dssp HHHHHHHHHHS-------STTSEEEEEESSSTHHHHHHHHTTS-------------EEEEEEEEETTTT----------E
T ss_pred chhhhhhcccc-------cccccceecCCccccccccccccCc-------------eeeeccccccccc----------c
Confidence 66666655521 3568899999999887333222221 2223331100011 1
Q ss_pred HHHHHHHHHHHhC-CC--cEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccc-c-cccc
Q psy8199 406 CAIFDLEILLKKN-HN--KIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFF-A-CEHA 480 (965)
Q Consensus 406 ~d~~~le~~l~~~-~~--~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~-~-~~~~ 480 (965)
.|+++|++.+++. .+ +..+|++.. ++|++|... +.+.+++|.++|++||+++|+||+|..+......+ . ....
T Consensus 130 ~d~~~l~~~l~~~~~~~~~~~~v~~~~-p~nPtG~~~-~~~~l~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~ 207 (363)
T PF00155_consen 130 LDPEALEEALDELPSKGPRPKAVLICN-PNNPTGSVL-SLEELRELAELAREYNIIIIVDEAYSDLIFGDPDFGPIRSLL 207 (363)
T ss_dssp ETHHHHHHHHHTSHTTTETEEEEEEES-SBTTTTBB---HHHHHHHHHHHHHTTSEEEEEETTTTGBSSSSHTHHHHGHH
T ss_pred ccccccccccccccccccccceeeecc-ccccccccc-ccccccchhhhhcccccceeeeeceeccccCCCccCcccccc
Confidence 4789999999864 22 345666666 699999866 77779999999999999999999998764332211 1 2222
Q ss_pred CCCccee---eeccccCC-CcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc-----ccHH
Q psy8199 481 EIWPDFL---CLSKGITG-GYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK-----DNIL 551 (965)
Q Consensus 481 ~~~pDiv---t~sK~l~g-G~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~-----~~~~ 551 (965)
.-.++++ +|||+++- | +++|++++++++++.+.. ...++..+.+.++++.+.|..... +...
T Consensus 208 ~~~~~vi~~~S~SK~~g~~G-lRvG~i~~~~~~~~~l~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 278 (363)
T PF00155_consen 208 DEDDNVIVVGSLSKSFGLPG-LRVGYIVAPPELIERLRR--------FQRSGLSSSPMQAAAAAALSDPELVEKWLEELR 278 (363)
T ss_dssp TTTSTEEEEEESTTTTTSGG-GTEEEEEEEHHHHHHHHH--------HHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccceeeeeccccccccc-cccccccchhhhhhhhhh--------ccccccccchhhHHHHHhhhcccccccccccch
Confidence 3334433 68998863 5 899999999999988875 122333377777777777754321 3355
Q ss_pred HHHHHHHHHHHHHHHcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHc-CcEEeec-----CCEEEEeC
Q psy8199 552 QRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKN-ELLLRPI-----GNTVYLMP 625 (965)
Q Consensus 552 ~~~~~~~~~l~~~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~-Gi~~~~~-----~~~lR~~p 625 (965)
++++++.+++.+.|++. ++....+.+.++.+... + ......+.+.|.++ ||.+.|+ .+++|++.
T Consensus 279 ~~l~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~~~--~----~~~~~~l~~~L~~~~gi~v~pg~~~~~~~~iRi~~ 348 (363)
T PF00155_consen 279 ERLRENRDLLREALEEI----GITVLPPEAGFFLWVRL--D----PNDAEELAQELLEEYGILVRPGSYFGVPGYIRISL 348 (363)
T ss_dssp HHHHHHHHHHHHHHHHT----TSEEEHHSBSSEEEEEE--S----HHHHHHHHHHHHHHHTEEEEEGGGGTSTTEEEEEG
T ss_pred hhHHHHHHHHHHHHHHh----hhheeeccCccEEEEEc--c----cchHHHHHHHHHHhCCEEEEecCCCCCCCEEEEEe
Confidence 66666777777777654 45555554554444432 1 11345688888887 9999984 36999996
Q ss_pred CcccCHHHHHHHHHhh
Q psy8199 626 PYILNKNEIQHMTSAI 641 (965)
Q Consensus 626 ~~~~t~~~i~~~~~~l 641 (965)
..+++++++++++++
T Consensus 349 -a~~~~e~~~~~~~~l 363 (363)
T PF00155_consen 349 -ASHSEEDLEEALERL 363 (363)
T ss_dssp -GCSCHHHHHHHHHHH
T ss_pred -ccCCHHHHHHHHhhC
Confidence 589999999999875
|
On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A .... |
| >TIGR03539 DapC_actino succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.9e-17 Score=185.65 Aligned_cols=321 Identities=11% Similarity=-0.010 Sum_probs=204.6
Q ss_pred cCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcC---CCCCeEEEcCChhHHH
Q psy8199 251 FSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQ---YKLGHCFYGSDGASAV 327 (965)
Q Consensus 251 ~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~---~~~~~v~~~~sGseA~ 327 (965)
..+..++|+.+|.. ....+|.+.+++.+.... ..|....+..+.+.++++.+.+..+ .+.+++++|+|+++|+
T Consensus 18 ~~~~~~i~l~~~~p---~~~~~~~~~~~~~~~~~~-~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~I~it~G~~~~i 93 (357)
T TIGR03539 18 SHPDGIVDLSVGTP---VDPVPPLIRAALAAAADA-PGYPQTWGTPELREAIVDWLERRRGVPGLDPTAVLPVIGTKELV 93 (357)
T ss_pred hCCCCeEEccCCCC---CCCCCHHHHHHHHHHHhh-CCCCcccCCHHHHHHHHHHHHHhcCCCCCCcCeEEEccChHHHH
Confidence 35667899888743 233578888888776543 2333344556777888888877643 3568999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHH
Q psy8199 328 EVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCA 407 (965)
Q Consensus 328 ~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 407 (965)
..++.++.. .+++.|++.+++|.++...+...+ ...++.+ +
T Consensus 94 ~~~~~~l~~-------~~gd~Vl~~~p~y~~~~~~~~~~g---------------~~~~~v~-----------------~ 134 (357)
T TIGR03539 94 AWLPTLLGL-------GPGDTVVIPELAYPTYEVGALLAG---------------ATPVAAD-----------------D 134 (357)
T ss_pred HHHHHHHcC-------CCCCEEEECCCCcHHHHHHHHhcC---------------CEEeccC-----------------C
Confidence 888775421 256889999999987743322221 1122221 1
Q ss_pred HHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccccccc-ccc--cC-CC
Q psy8199 408 IFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFA-CEH--AE-IW 483 (965)
Q Consensus 408 ~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~-~~~--~~-~~ 483 (965)
++.++ ..++.+|+++. ++|++|.+. +.+.+++|.++|++||+++|.||+|..|...+.... ... .+ ..
T Consensus 135 ~~~l~------~~~~~~v~~~~-p~NPtG~~~-~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~ 206 (357)
T TIGR03539 135 PTELD------PVGPDLIWLNS-PGNPTGRVL-SVDELRAIVAWARERGAVVASDECYLELGWEGRPVSILDPRVCGGDH 206 (357)
T ss_pred hhhcC------ccCccEEEEeC-CCCCcCccC-CHHHHHHHHHHHHHcCeEEEEecchhhhccCCCCccceecccCCCcc
Confidence 22221 13456666665 699999876 677799999999999999999999987754443211 110 11 11
Q ss_pred ccee---eeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh-cccHHHHHHHHHH
Q psy8199 484 PDFL---CLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN-KDNILQRISQDMK 559 (965)
Q Consensus 484 pDiv---t~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~-~~~~~~~~~~~~~ 559 (965)
..++ +|||.++..++++|++++++++++.+.. ......++.+++++.++.++|+... .....+.++++.+
T Consensus 207 ~~vi~~~S~SK~~~~~G~R~G~~i~~~~~~~~~~~------~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~ 280 (357)
T TIGR03539 207 TGLLAVHSLSKRSNLAGYRAGFVAGDPALVAELLT------VRKHAGLMVPAPVQAAMVAALGDDGHVAEQKARYAARRA 280 (357)
T ss_pred ccEEEEeccccccCCCceeEEEEecCHHHHHHHHH------HHhhcccCCCHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 2233 6899874322899999999999887754 1222345678888888888774211 1123444455555
Q ss_pred HHHHHHHcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec-------CCEEEEeCCcccCHH
Q psy8199 560 KITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-------GNTVYLMPPYILNKN 632 (965)
Q Consensus 560 ~l~~~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-------~~~lR~~p~~~~t~~ 632 (965)
++.+.|++. ++...++.|.++.+... .. ....+.+.|.++||.+.|+ .+++|++. ..+++
T Consensus 281 ~~~~~L~~~----g~~~~~p~~~~~~~~~~-~~------~~~~~~~~l~~~gV~v~pg~~f~~~~~~~iRis~--~~~~~ 347 (357)
T TIGR03539 281 QLKPALEKA----GFRIDHSEAGLYLWATR-GE------DAWDTVDRLAELGILVAPGDFYGPAGSQHVRVAL--TATDE 347 (357)
T ss_pred HHHHHHHHc----CCCCcCCCccEEEEEEC-CC------CHHHHHHHHHhCCEEECCccccCCCCCCeEEEEe--cCCHH
Confidence 566655543 33334455665444332 11 1335777888999999874 26899994 45788
Q ss_pred HHHHHHHhh
Q psy8199 633 EIQHMTSAI 641 (965)
Q Consensus 633 ~i~~~~~~l 641 (965)
++++.++++
T Consensus 348 ~i~~~~~~l 356 (357)
T TIGR03539 348 RIAAAVARL 356 (357)
T ss_pred HHHHHHHhh
Confidence 888888765
|
This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PRK09265 aminotransferase AlaT; Validated | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.6e-17 Score=186.76 Aligned_cols=343 Identities=15% Similarity=0.121 Sum_probs=208.7
Q ss_pred cCCcccccccccchhccCCCC-CHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhc--CCCCCeEEEcCChhHHH
Q psy8199 251 FSGKRYLDAISSWWVNLFGHS-NSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLT--QYKLGHCFYGSDGASAV 327 (965)
Q Consensus 251 ~dG~~ylD~~~~~~~~~lGh~-~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~--~~~~~~v~~~~sGseA~ 327 (965)
..|+..+|+..|.. .++++. +|++.+++.+.+.....|....+..+.++.+++.+.... +...++|++++|+++++
T Consensus 30 ~~~~~~i~l~~g~p-~~~~~~~~~~i~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~i~~t~G~~~~l 108 (404)
T PRK09265 30 EEGHKILKLNIGNP-APFGFEAPDEILRDVIRNLPTAQGYSDSKGLFSARKAIMQYYQQKGIPDVDVDDIYIGNGVSELI 108 (404)
T ss_pred HcCCCeEEecCCCC-CcCCCCCCHHHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHhccCCCCCCcccEEEeCChHHHH
Confidence 35778899887744 356654 778999988776544334333344455666666654322 34667999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHH
Q psy8199 328 EVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCA 407 (965)
Q Consensus 328 ~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 407 (965)
..+++... .++++|++.+++|..+.......+. ....++........ .|
T Consensus 109 ~~~~~~~~--------~~gd~Vlv~~p~y~~~~~~~~~~g~-------------~~v~~~~~~~~~~~----------~d 157 (404)
T PRK09265 109 VMAMQALL--------NNGDEVLVPAPDYPLWTAAVSLSGG-------------KPVHYLCDEEAGWF----------PD 157 (404)
T ss_pred HHHHHHhC--------CCCCEEEEeCCCCcChHHHHHHcCC-------------EEEEEecccccCCC----------CC
Confidence 99888663 2567899999999876433222221 12222221100000 25
Q ss_pred HHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccccc-ccccccCCCcc-
Q psy8199 408 IFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKF-FACEHAEIWPD- 485 (965)
Q Consensus 408 ~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~-~~~~~~~~~pD- 485 (965)
++++++.+.. ...+++++.| +|++|.+. +.+.+++|.++|++||+++|+||+|..|-..+.. ..... +.++
T Consensus 158 ~~~l~~~~~~--~~~~v~l~~P--~NPtG~~~-~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~--~~~~~ 230 (404)
T PRK09265 158 LDDIRSKITP--RTKAIVIINP--NNPTGAVY-SKELLEEIVEIARQHNLIIFADEIYDKILYDGAVHISIAS--LAPDL 230 (404)
T ss_pred HHHHHHhccc--cceEEEEECC--CCCCCcCC-CHHHHHHHHHHHHHCCCEEEEehhhhhccCCCCCcCCHHH--cCCCc
Confidence 6778877742 2234555666 88999876 6777999999999999999999999877433321 11111 1222
Q ss_pred -ee---eeccccCCCcccceeeee--cHH----HHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc-ccHH---
Q psy8199 486 -FL---CLSKGITGGYLPLSLVMT--TDK----IYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK-DNIL--- 551 (965)
Q Consensus 486 -iv---t~sK~l~gG~~pig~v~~--~~~----i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~-~~~~--- 551 (965)
++ +|||.++..++++|++++ +++ +++.+.. ....+++.+.+++.++.++|+..+. ..+.
T Consensus 231 ~vi~~~S~SK~~~~pGlRiG~~v~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~ 303 (404)
T PRK09265 231 LCVTFNGLSKAYRVAGFRVGWMVLSGPKKHAKGYIEGLDM-------LASMRLCANVPAQHAIQTALGGYQSINELILPG 303 (404)
T ss_pred eEEEEecchhhccCcccceEEEEEeCchHHHHHHHHHHHH-------HhccccCCCcHHHHHHHHHhcCchhHHHHHHHH
Confidence 33 579988542389999986 343 3333221 1123456778888888888842111 1121
Q ss_pred HHHHHHHHHHHHHHHcccCCCceeeeecee-EEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec-------CCEEEE
Q psy8199 552 QRISQDMKKITKALTSLITHPKIINFRQKG-MIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-------GNTVYL 623 (965)
Q Consensus 552 ~~~~~~~~~l~~~L~~l~~~~~i~~v~g~G-~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-------~~~lR~ 623 (965)
+++.++.+.+.+.|++ ++++....+.| +++++.+. ..........+.+.+.+.++||.+.|+ .+++|+
T Consensus 304 ~~~~~~r~~~~~~L~~---~~~~~~~~p~~g~~l~~~~~-~~~~~~~~~~~~~~~~l~~~gv~v~pg~~F~~~~~~~~Ri 379 (404)
T PRK09265 304 GRLYEQRDRAWELLNA---IPGVSCVKPKGALYAFPKLD-PKVYPIHDDEQFVLDLLLQEKVLLVQGTGFNWPEPDHFRI 379 (404)
T ss_pred HHHHHHHHHHHHHHhc---CCCCcccCCCcceEEEEEec-ccccCCCCHHHHHHHHHHhCCEEEECchhhCCCCCCeEEE
Confidence 2344555555555544 34555455554 45555553 110000111334667788999999874 258999
Q ss_pred eCCcccCHHHHHHHHHhhhccc
Q psy8199 624 MPPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 624 ~p~~~~t~~~i~~~~~~l~~~~ 645 (965)
+ +..+++++++.++++.+.+
T Consensus 380 ~--~~~~~e~l~~~l~rl~~~l 399 (404)
T PRK09265 380 V--TLPRVDDLEEAIGRIGRFL 399 (404)
T ss_pred E--eCCCHHHHHHHHHHHHHHH
Confidence 9 5578899999998887644
|
|
| >smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.2e-18 Score=179.06 Aligned_cols=185 Identities=23% Similarity=0.364 Sum_probs=150.8
Q ss_pred eEeeccCCCCCCCCCCCCCCcCCCCcccccCCCHHHHHHHHHHHHHCC-----CCEEEEeeccCCCCcc-cHHHHHHHHH
Q psy8199 684 LLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDG-----ATRFCMGAAWRELKDR-DLDNIENMIC 757 (965)
Q Consensus 684 ~i~~~s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g-----~~~i~l~~g~~~~~~~-~~~~~~~~~~ 757 (965)
.+.+ |++|+++|.||......+ . .+..+++++.++++.+.+.| .+.+.+++|+..+... .+..+++.++
T Consensus 4 ~i~~-t~~C~~~C~yC~~~~~~~---~-~~~~~~e~i~~~~~~~~~~~~~~~~~~~i~~~gg~~~~~~~~~~~~~~~~~~ 78 (216)
T smart00729 4 LYII-TRGCPRRCTFCSFPSARG---K-LRSRYLEALVREIELLAEKGEKEILVGTVFIGGGTPTLLSPEQLEELLEAIR 78 (216)
T ss_pred EEEe-cCchhccCCcCCcCcccc---c-hhHHHHHHHHHHHHHHHhcccCCcceeEEEECCCCCCCCCHHHHHHHHHHHH
Confidence 4556 999999999998776431 1 44478999999999886654 4677787776543321 2344444444
Q ss_pred HHHhc----CcEeEEecCCCCHHHHHHHHHhCCCeEeccCCC-CHHHHhcccCCCCHHHHHHHHHHHHHcC-CceeeeEE
Q psy8199 758 EVKKI----GLETCLTLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVG-INICCGGI 831 (965)
Q Consensus 758 ~i~~~----~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~~es-~~~~~~~i~~~~~~~~~~~~i~~~~~~G-i~v~~~~i 831 (965)
..... .+.+.++.+.++++.++.|+++|++.+.+++++ +++.++.++++.++++++++++.++++| +.+..+++
T Consensus 79 ~~~~~~~~~~~~~~tn~~~~~~~~~~~l~~~~~~~i~isl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~v~~~~~ 158 (216)
T smart00729 79 EILGLADDVEITIETRPGTLTEELLEALKEAGVNRVSLGVQSGSDEVLKAINRGHTVEDVLEAVEKLREAGPIKVSTDLI 158 (216)
T ss_pred HhCCCCCCeEEEEEeCcccCCHHHHHHHHHcCCCeEEEecccCCHHHHHHhcCCCCHHHHHHHHHHHHHhCCcceEEeEE
Confidence 43321 244556778899999999999999999999999 9999999999999999999999999999 89999999
Q ss_pred EecC-CCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCCCC
Q psy8199 832 IGLS-ESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSS 875 (965)
Q Consensus 832 ~Gl~-et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~~~ 875 (965)
+|++ ++.+++.+.++++++++ ++.+.+++++|.|||+++..+
T Consensus 159 ~g~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~p~~~t~~~~~~ 201 (216)
T smart00729 159 VGLPGETEEDFEETLKLLKELG--PDRVSIFPLSPRPGTPLAKLY 201 (216)
T ss_pred ecCCCCCHHHHHHHHHHHHHcC--CCeEEeeeeeeCCCChHHHhc
Confidence 9995 99999999999999999 899999999999999998755
|
This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases. |
| >PRK06425 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.4e-17 Score=184.72 Aligned_cols=281 Identities=13% Similarity=0.085 Sum_probs=186.1
Q ss_pred CCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCc
Q psy8199 293 NLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSF 372 (965)
Q Consensus 293 ~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~ 372 (965)
.|+.+...+|.+.+++.++...++|++++|+++++..++++. . + +.+++.+++|..+...+...+.
T Consensus 36 ~Yp~~~~~~lr~~ia~~~~~~~~~I~it~Gs~~~l~~~~~~~-~--------~-~~vv~~~P~y~~y~~~~~~~G~---- 101 (332)
T PRK06425 36 IYPEISYTDIEDQIKIYTQGLKIKVLIGPGLTHFIYRLLSYI-N--------V-GNIIIVEPNFNEYKGYAFTHGI---- 101 (332)
T ss_pred cCcCcCHHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHHh-C--------C-CcEEEeCCChHHHHHHHHHcCC----
Confidence 466777889999999999888889999999999999888632 1 3 3578889999888554444332
Q ss_pred cchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHH
Q psy8199 373 KEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREIC 452 (965)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~ 452 (965)
.+..+|... .. .|.+.++ +. ...+.++++| +|++|.+. +.+.+++|.++|
T Consensus 102 ---------~v~~vp~~~--~~-----------~~~~~l~----~~-~~k~v~l~nP--~NPTG~~~-s~~~~~~l~~~a 151 (332)
T PRK06425 102 ---------RISALPFNL--IN-----------NNPEILN----NY-NFDLIFIVSP--DNPLGNLI-SRDSLLTISEIC 151 (332)
T ss_pred ---------eEEEEeCCc--cc-----------CcHHHHh----hc-CCCEEEEeCC--CCCcCCcc-CHHHHHHHHHHH
Confidence 233444321 00 1233332 21 2234556666 99999876 677799999999
Q ss_pred HhcCCeEEEeccccCCCcccccccccccCCCccee---eeccccC-CCcccceeeeecHHHHHhhhccCCcccccccCCC
Q psy8199 453 NNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL---CLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSY 528 (965)
Q Consensus 453 ~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDiv---t~sK~l~-gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~ 528 (965)
++||+++|+||+|..|...+........+-.++++ +|||.++ .| +++|++++++++++.+.. ....+
T Consensus 152 ~~~~~~iI~DE~Y~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~G-lRiGy~v~~~~li~~l~~--------~~~~~ 222 (332)
T PRK06425 152 RKKGALLFIDEAFIDFVPNRAEEDVLLNRSYGNVIIGRSLTKILGIPS-LRIGYIATDDYNMKISRK--------ITEPW 222 (332)
T ss_pred HHcCCEEEEecchhccccccchhHHHHhccCCCEEEEeecHHhcCCch-hhheeeecCHHHHHHHHH--------cCCCC
Confidence 99999999999999885333111111122224555 6899887 56 899999999999988865 12233
Q ss_pred CCCHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHHHcccCCCceeee-eceeEEEEEEEeecCccchhhHHHHHHHH
Q psy8199 529 SGNPLACCAALATLEIFN-KDNILQRISQDMKKITKALTSLITHPKIINF-RQKGMIWAFDVIIEDPEQIETFSKKFFVA 606 (965)
Q Consensus 529 ~~~~~~~aaa~a~L~~~~-~~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v-~g~G~~~~i~~~~~~~~~~~~~~~~~~~~ 606 (965)
..+.+++++. ...+.-. .+...+.++++.+++.+.|+++ ++..+ .+.|.|+.+.+. + ...+.+.
T Consensus 223 ~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~----g~~~~~~~~g~f~~~~~~--~-------~~~~~~~ 288 (332)
T PRK06425 223 SVCDPAIDFI-RSIDLDYVAKHSLDIMENERSYLINNLEAM----GFRAAGDPSANFITFMIP--D-------AHDFYSY 288 (332)
T ss_pred ccCHHHHHHH-HHhhhHHHHHHHHHHHHHHHHHHHHHHHHC----CCEECCCCCceEEEEEcC--C-------HHHHHHH
Confidence 3444443322 2221100 1234566667777777777654 34433 467888777653 1 3467788
Q ss_pred HHHcCcEEeec-------CCEEEEeCCcccCHHHHHHHHHhhhc
Q psy8199 607 ALKNELLLRPI-------GNTVYLMPPYILNKNEIQHMTSAIFQ 643 (965)
Q Consensus 607 l~~~Gi~~~~~-------~~~lR~~p~~~~t~~~i~~~~~~l~~ 643 (965)
|.++||.++|+ .+++|++ ..+.++.+.+++++.+
T Consensus 289 l~~~gi~v~~~~~f~~~~~~~iRis---~~~~~~~~~l~~al~~ 329 (332)
T PRK06425 289 LLKNGILVRLLDDYECLGEQYIRIA---IRRRSFNIKLVNALRN 329 (332)
T ss_pred HHHCCeEEEECCCCCCCCCCEEEEE---eCCHHHHHHHHHHHHH
Confidence 88999999874 2589999 5677889999888764
|
|
| >PRK01688 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.5e-18 Score=190.91 Aligned_cols=284 Identities=14% Similarity=0.168 Sum_probs=191.7
Q ss_pred CCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCc
Q psy8199 293 NLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSF 372 (965)
Q Consensus 293 ~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~ 372 (965)
.|+.....+|.+.+++.++.+.++|++++|++|++..+++.... ++++.|++.+++|..+...+...+.
T Consensus 53 ~Yp~~~~~~l~~~~a~~~g~~~~~I~~~~Gs~e~i~~~~~~~~~-------~g~~~vli~~P~y~~y~~~~~~~G~---- 121 (351)
T PRK01688 53 RYPECQPKAVIENYAAYAGVKPEQVLVSRGADEGIELLIRAFCE-------PGKDAILYCPPTYGMYSVSAETIGV---- 121 (351)
T ss_pred cCCCCChHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHHHhcC-------CCCCEEEEcCCCHHHHHHHHHHcCC----
Confidence 45555567999999999988889999999999999999987633 3447899999999776432222211
Q ss_pred cchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHH
Q psy8199 373 KEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREIC 452 (965)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~ 452 (965)
.+..+|..... . .|++++++++. +....++++| +|++|.+. +.+.+++|.+.|
T Consensus 122 ---------~~~~v~~~~~~-~-----------~d~~~l~~~~~---~~~lv~l~nP--nNPTG~~~-~~~~l~~l~~~~ 174 (351)
T PRK01688 122 ---------EIRTVPTLDNW-Q-----------LDLPAIADNLD---GVKVVYVCSP--NNPTGNLI-NPQDLRTLLELT 174 (351)
T ss_pred ---------EEEEeecCCCC-C-----------CCHHHHHHhcc---CCcEEEEeCC--CCCCCCCC-CHHHHHHHHHhC
Confidence 23334432211 1 26777877662 2334566666 99999877 666788888888
Q ss_pred HhcCCeEEEeccccCCCcccccccccccCCCccee---eeccccC-CCcccceeeeecHHHHHhhhccCCcccccccCCC
Q psy8199 453 NNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL---CLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSY 528 (965)
Q Consensus 453 ~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDiv---t~sK~l~-gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~ 528 (965)
++ ++++|+||+|..|... ..........++++ ||||++| .| +++|++++++++++.+.. ....+
T Consensus 175 ~~-~~~vivDEay~~f~~~--~s~~~~~~~~~n~iv~rSfSK~~glaG-lRiGy~i~~~~~i~~l~~--------~~~~~ 242 (351)
T PRK01688 175 RG-KAIVVADEAYIEFCPQ--ASLAGWLAEYPHLVILRTLSKAFALAG-LRCGFTLANEEVINLLLK--------VIAPY 242 (351)
T ss_pred CC-CcEEEEECchhhcCCC--CChHHHHhhCCCEEEEecchHhhcCHH-HHHhHHhCCHHHHHHHHh--------ccCCC
Confidence 76 6899999999887421 11112222345655 6899886 34 899999999999988865 12345
Q ss_pred CCCHHHHHHHHHHHHHHh---cccHHHHHHHHHHHHHHHHHcccCCCcee-eeeceeEEEEEEEeecCccchhhHHHHHH
Q psy8199 529 SGNPLACCAALATLEIFN---KDNILQRISQDMKKITKALTSLITHPKII-NFRQKGMIWAFDVIIEDPEQIETFSKKFF 604 (965)
Q Consensus 529 ~~~~~~~aaa~a~L~~~~---~~~~~~~~~~~~~~l~~~L~~l~~~~~i~-~v~g~G~~~~i~~~~~~~~~~~~~~~~~~ 604 (965)
+.+.+++++|.++|+.-. -.+..+.+.+..+++.+.|+.+ +++. ..++.|+|+.+.+. + ...+.
T Consensus 243 ~v~~~~~~~a~~~L~~~~~~~~~~~~~~~~~~r~~l~~~L~~~---~~~~~~~ps~~nfi~~~~~--~-------~~~l~ 310 (351)
T PRK01688 243 PLSTPVADIAAQALSPQGIAAMRERVAEINANRQWLIAALKEI---PCVEQVFDSETNYILARFT--A-------SSAVF 310 (351)
T ss_pred CCCHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhC---CCCCeECCCCCcEEEEEcC--C-------HHHHH
Confidence 667778888888775210 0122344455566676666544 4443 34566777776553 1 34678
Q ss_pred HHHHHcCcEEeec------CCEEEEeCCcccCHHHHHHHHHhh
Q psy8199 605 VAALKNELLLRPI------GNTVYLMPPYILNKNEIQHMTSAI 641 (965)
Q Consensus 605 ~~l~~~Gi~~~~~------~~~lR~~p~~~~t~~~i~~~~~~l 641 (965)
+.|.++||.+++. .+++|++ ..+.++++.+++++
T Consensus 311 ~~L~~~gi~vr~~~~~~~~~~~iRis---~~~~~e~~~l~~al 350 (351)
T PRK01688 311 KSLWDQGIILRDQNKQPGLSNCLRIT---IGTREECQRVIDAL 350 (351)
T ss_pred HHHHHCCeEEEECCCcCCCCCeEEEe---CCCHHHHHHHHHhh
Confidence 8899999999863 2689999 44789999988776
|
|
| >TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.4e-17 Score=182.59 Aligned_cols=270 Identities=13% Similarity=0.149 Sum_probs=178.5
Q ss_pred HHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhc
Q psy8199 298 PVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYT 377 (965)
Q Consensus 298 ~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~ 377 (965)
...++.+.++++++...+++++++|+++++..+.++. .++ +|++.+++|+++.......
T Consensus 48 ~~~~lr~~la~~~~~~~~~i~~t~G~~~~i~~~~~~l---------~~g-~vl~~~p~y~~~~~~~~~~----------- 106 (330)
T TIGR01140 48 EYDELRAAAAAYYGLPAASVLPVNGAQEAIYLLPRLL---------APG-RVLVLAPTYSEYARAWRAA----------- 106 (330)
T ss_pred cHHHHHHHHHHHhCCChhhEEECCCHHHHHHHHHHHh---------CCC-eEEEeCCCcHHHHHHHHHc-----------
Confidence 3477888888888766789999999999988865543 234 6999999998873221111
Q ss_pred ccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCC
Q psy8199 378 SLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNI 457 (965)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~ 457 (965)
+....+.+ |++++++.+.+ ..+++++.| +|++|.+. +.+.+++|.++|++||+
T Consensus 107 ----g~~~~~~~-----------------d~~~l~~~~~~---~~~v~i~~p--~NPtG~~~-~~~~~~~l~~~a~~~~~ 159 (330)
T TIGR01140 107 ----GHEVVELP-----------------DLDRLPAALEE---LDVLVLCNP--NNPTGRLI-PPETLLALAARLRARGG 159 (330)
T ss_pred ----CCEEEEeC-----------------CHHHHHhhccc---CCEEEEeCC--CCCCCCCC-CHHHHHHHHHHhHhcCC
Confidence 12222221 45777777632 224556666 88999866 78889999999999999
Q ss_pred eEEEeccccCCCcccccccccccCCCccee---eeccccC-CCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHH
Q psy8199 458 HLIADEIAVGCGRTGKFFACEHAEIWPDFL---CLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPL 533 (965)
Q Consensus 458 llI~DEv~tg~gr~G~~~~~~~~~~~pDiv---t~sK~l~-gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~ 533 (965)
++|+||+|.+|...... ....+..++++ +|||.++ .| +++|++++++++++.+.. ...+++.+++
T Consensus 160 ~ii~De~y~~~~~~~~~--~~~~~~~~~~i~~~S~SK~~g~~G-~R~G~i~~~~~~~~~l~~--------~~~~~~~s~~ 228 (330)
T TIGR01140 160 WLVVDEAFIDFTPDASL--APQAARFPGLVVLRSLTKFFGLAG-LRLGFVVAHPALLARLRE--------ALGPWTVNGP 228 (330)
T ss_pred EEEEECcccccCCccch--hhHhccCCCEEEEEecchhhcCch-hhhhheeCCHHHHHHHHh--------cCCCCCchHH
Confidence 99999999877532111 11112224444 7899987 45 899999999999988865 2235667888
Q ss_pred HHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHHHcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCc
Q psy8199 534 ACCAALATLEIFN-KDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNEL 612 (965)
Q Consensus 534 ~~aaa~a~L~~~~-~~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi 612 (965)
+++++.+.|+.-. .....++++.+.+++.+.|+++ +.+....+.|+|+++.+. + ..++.+.|.++||
T Consensus 229 ~q~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~---~~~~~~~~~~~f~~~~~~--~-------~~~l~~~l~~~gi 296 (330)
T TIGR01140 229 ARAAGRAALADTAWQAATRARLAAERARLAALLARL---GGLEVVGGTALFLLVRTP--D-------AAALHEALARRGI 296 (330)
T ss_pred HHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhC---CCceECCCCCeEEEEEcC--C-------HHHHHHHHHHCCE
Confidence 8888887775211 0123455555555555555543 434444556777777653 1 2468889999999
Q ss_pred EEeecC-------CEEEEeCCcccCHHHHHHHHHhh
Q psy8199 613 LLRPIG-------NTVYLMPPYILNKNEIQHMTSAI 641 (965)
Q Consensus 613 ~~~~~~-------~~lR~~p~~~~t~~~i~~~~~~l 641 (965)
++.|+. +++|++. ....++ +.++.++
T Consensus 297 ~v~pg~~f~~~~~~~iRi~~--~~~~~~-~~~~~~l 329 (330)
T TIGR01140 297 LIRDFDNFPGLDPRYLRFAL--PTDEEN-DRLEEAL 329 (330)
T ss_pred EEEECCCCCCCCCCEEEEEe--cCHHHH-HHHHHhh
Confidence 998742 5899994 333344 6666554
|
This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella. |
| >PRK05957 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.9e-17 Score=183.88 Aligned_cols=333 Identities=15% Similarity=0.077 Sum_probs=210.6
Q ss_pred ccccccccchhccCCCCCHHHHHHHHHHHhhcc--ccccCCCCcHHHHHHHHHHHhhcCCC---CCeEEEcCChhHHHHH
Q psy8199 255 RYLDAISSWWVNLFGHSNSYINKALKNQLNKLE--HVMLSNLTHKPVIKLSEKLSSLTQYK---LGHCFYGSDGASAVEV 329 (965)
Q Consensus 255 ~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~--~~~~~~~~~~~~~~la~~l~~~~~~~---~~~v~~~~sGseA~~~ 329 (965)
.++|+..|.. .++ .++.+.+|+.+.+.... .+....+..+.+..+++.+++.++.. .+++++++|+++|+..
T Consensus 28 ~~~~l~~g~~--~~~-~~~~~~~a~~~~~~~~~~~~Y~~~~G~~~lr~~~~~~l~~~~g~~~~~~~~i~~t~G~~~~l~~ 104 (389)
T PRK05957 28 GTISLGQGVV--SYP-PPPEAIEALNNFLANPENHKYQAVQGIPPLLEAITQKLQQDNGIELNNEQAIVVTAGSNMAFMN 104 (389)
T ss_pred CeEEccCCCC--CCC-CCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCChHHHHHH
Confidence 3566665533 233 47788999988765432 23334455677888999998887643 5689999999999988
Q ss_pred HHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHH
Q psy8199 330 ALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIF 409 (965)
Q Consensus 330 Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 409 (965)
++.... .+++.|++.+++|.++....... ...+..+|...... .|++
T Consensus 105 ~~~~~~--------~~gd~Vlv~~P~y~~~~~~~~~~-------------g~~~~~v~~~~~~~------------~d~~ 151 (389)
T PRK05957 105 AILAIT--------DPGDEIILNTPYYFNHEMAITMA-------------GCQPILVPTDDNYQ------------LQPE 151 (389)
T ss_pred HHHHhc--------CCCCEEEEeCCCCcCHHHHHHhc-------------CCEEEEeecCCCCC------------cCHH
Confidence 887653 25688999999986653221111 11233333321111 3678
Q ss_pred HHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccccc-cc-ccccCCCcce-
Q psy8199 410 DLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKF-FA-CEHAEIWPDF- 486 (965)
Q Consensus 410 ~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~-~~-~~~~~~~pDi- 486 (965)
++++++.+ ++.+|++.. ++|++|.+. +.+.+++|.++|++||+++|+||+|..|...+.. .. ....+..+.+
T Consensus 152 ~l~~~i~~---~~klv~~~~-p~NPtG~~~-~~~~~~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i 226 (389)
T PRK05957 152 AIEQAITP---KTRAIVTIS-PNNPTGVVY-PEALLRAVNQICAEHGIYHISDEAYEYFTYDGVKHFSPGSIPGSGNHTI 226 (389)
T ss_pred HHHHhcCc---CceEEEEeC-CCCCCCcCc-CHHHHHHHHHHHHHcCcEEEEeccchhccCCCCCccChhhCCCccCcEE
Confidence 88888752 344444444 599999877 6777999999999999999999999877433221 11 1111222233
Q ss_pred --eeeccccC-CCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh--cccHHHHHHHHHHHH
Q psy8199 487 --LCLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN--KDNILQRISQDMKKI 561 (965)
Q Consensus 487 --vt~sK~l~-gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~--~~~~~~~~~~~~~~l 561 (965)
-+|||.++ .| +++|++++++++++.+.. .......+.+.+++.++..+|+.-. -++..++++++.+.+
T Consensus 227 ~~~S~SK~~g~~G-lRiG~~~~~~~~~~~~~~------~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~r~~l 299 (389)
T PRK05957 227 SLYSLSKAYGFAS-WRIGYMVIPIHLLEAIKK------IQDTILICPPVVSQYAALGALQVGKSYCQQHLPEIAQVRQIL 299 (389)
T ss_pred EEecchhhccCcc-ceeEEEecCHHHHHHHHH------HHhhcccCCCcHHHHHHHHHHhCChHHHHHHHHHHHHHHHHH
Confidence 36899886 45 899999999999988865 1222234456678888877774210 022344556666666
Q ss_pred HHHHHcccCCCce-eeeecee-EEEEEEEeecCccchhhHHHHHHHHHH-HcCcEEeec-------CCEEEEeCCcccCH
Q psy8199 562 TKALTSLITHPKI-INFRQKG-MIWAFDVIIEDPEQIETFSKKFFVAAL-KNELLLRPI-------GNTVYLMPPYILNK 631 (965)
Q Consensus 562 ~~~L~~l~~~~~i-~~v~g~G-~~~~i~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~-------~~~lR~~p~~~~t~ 631 (965)
.+.|+.+ +++ ....+.| +++++.+. ... ...++.+.|. ++||.+.|+ ++++|++.. ..++
T Consensus 300 ~~~L~~~---~~~~~~~~~~gg~~~~~~~~--~~~----~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~-~~~~ 369 (389)
T PRK05957 300 LKSLGQL---QDRCTLHPANGAFYCFLKVN--TDL----NDFELVKQLIREYRVAVIPGTTFGMKNGCYLRIAYG-ALQK 369 (389)
T ss_pred HHHHHhc---CCCccccCCCeeEEEEEeCC--CCC----ChHHHHHHHHHHCCEEEccchhhCCCCCCEEEEEEe-cCCH
Confidence 6666554 332 2234454 45555553 111 1345767776 689999884 248999943 2578
Q ss_pred HHHHHHHHhhhccc
Q psy8199 632 NEIQHMTSAIFQTF 645 (965)
Q Consensus 632 ~~i~~~~~~l~~~~ 645 (965)
+++.+.++++.+.+
T Consensus 370 ~~l~~~~~~l~~~~ 383 (389)
T PRK05957 370 ATAKEGIERLVQGL 383 (389)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888876543
|
|
| >PRK06855 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.4e-17 Score=186.17 Aligned_cols=345 Identities=14% Similarity=0.084 Sum_probs=204.5
Q ss_pred CcccccccccchhccCCCC-CHHHHHHHHHHHhhc--cccccCCCCcHHHHHHHHHHHhhcC--CCCCeEEEcCChhHHH
Q psy8199 253 GKRYLDAISSWWVNLFGHS-NSYINKALKNQLNKL--EHVMLSNLTHKPVIKLSEKLSSLTQ--YKLGHCFYGSDGASAV 327 (965)
Q Consensus 253 G~~ylD~~~~~~~~~lGh~-~p~v~~av~~~~~~~--~~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~~~sGseA~ 327 (965)
|+..+++..|.. ...+.. ++.+.+++.+.+... ..|....+..+.++.+++.+.+..+ .+.++|++|+|+++|+
T Consensus 31 g~~~~~~~~G~p-~~~~~~~p~~~~~a~~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~I~it~G~~~al 109 (433)
T PRK06855 31 GVKITWENIGDP-IAKGEKIPDWMKEIVAELVMDDKSYGYCPTKGVLETREFLAELNNKRGGAQITPDDIIFFNGLGDAI 109 (433)
T ss_pred cccccccccCCC-cccCCCCCHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHhccCCCCCHhHEEEcCcHHHHH
Confidence 455666654422 112344 667788888776442 2244445566777888888877543 3567999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHH
Q psy8199 328 EVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCA 407 (965)
Q Consensus 328 ~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 407 (965)
..++.++ .+++.|++.+++|+++........+ ...+.+|.....+.. .|
T Consensus 110 ~~~~~l~---------~~Gd~Vlv~~P~Y~~~~~~~~~~~g------------~~~v~v~~~~~~~~~----------~d 158 (433)
T PRK06855 110 AKIYGLL---------RREARVIGPSPAYSTHSSAEAAHAG------------YPPVTYRLDPENNWY----------PD 158 (433)
T ss_pred HHHHHhc---------CCCCeEEEeCCCCchHHHHHHHhcC------------CeEEEEecccccCCC----------CC
Confidence 8887532 3568899999999987422111111 011222321100000 26
Q ss_pred HHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccccc-ccc-cccCCCcc
Q psy8199 408 IFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKF-FAC-EHAEIWPD 485 (965)
Q Consensus 408 ~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~-~~~-~~~~~~pD 485 (965)
+++|++++.+.+...++++++| +|++|.+. +.+.+++|.++|++||+++|.||+|..+-..+.. ... ....-.+.
T Consensus 159 ~~~l~~~~~~~~~~~~i~l~~P--~NPTG~~~-s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~sl~~~~~~~~~ 235 (433)
T PRK06855 159 LDDLENKVKYNPSIAGILLINP--DNPTGAVY-PKEILREIVDIAREYDLFIICDEIYNNIVYNGKKTVPLSEVIGDVPG 235 (433)
T ss_pred HHHHHHHHhcCCCceEEEEECC--CCCCCcCC-CHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCCHHHHcCcCCe
Confidence 7889988864333345566767 89999866 7888999999999999999999999988544431 111 11110111
Q ss_pred e--eeeccccC-CCcccceeeeec-----H---HHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccH----
Q psy8199 486 F--LCLSKGIT-GGYLPLSLVMTT-----D---KIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNI---- 550 (965)
Q Consensus 486 i--vt~sK~l~-gG~~pig~v~~~-----~---~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~---- 550 (965)
+ -+|||.++ .| +++|+++++ + ++++.+.. . .....+.+.+++.++.++|+--.-++.
T Consensus 236 I~~~S~SK~~~~pG-lRiG~ii~p~~~~~~~~~~~~~~~~~------~-~~~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~ 307 (433)
T PRK06855 236 IALKGISKELPWPG-SRCGWIEVYNADKDEVFKKYINSILN------A-KMIEVCSTTLPQMAIPRIMSHPEYKNYLKER 307 (433)
T ss_pred EEEecCccccCCCc-ceEEEEEEeCCchhhHHHHHHHHHHH------h-hccccCCChHHHHHHHHhhcCCcHHHHHHHH
Confidence 2 26899886 45 899999972 2 23333322 1 112345678888888888742110122
Q ss_pred HHHHHHHHHHHHHHHHcccCCCceeeeeceeEE-EEEEEeecCc--------cch---hh-----------HHHHHH-HH
Q psy8199 551 LQRISQDMKKITKALTSLITHPKIINFRQKGMI-WAFDVIIEDP--------EQI---ET-----------FSKKFF-VA 606 (965)
Q Consensus 551 ~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~G~~-~~i~~~~~~~--------~~~---~~-----------~~~~~~-~~ 606 (965)
.+.++++.+.+.+.|++ .+++...++.|.| +++.+. ... ... .. ....+. ..
T Consensus 308 ~~~~~~r~~~~~~~L~~---~~~~~~~~p~gg~~~w~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 383 (433)
T PRK06855 308 NKRYEKRSNIAYEKLKD---VPGLKVNRTNGAFYMTVVFE-DGVLNNKQSLPIENPEVKEYVEGLVKGPVSPDKRFVYYL 383 (433)
T ss_pred HHHHHHHHHHHHHHHhc---CCCeeccCCCeeEEEeeccc-cccccccccCCcchhhhHHHHHHHHhcCCCchHHHHHHH
Confidence 33334444444454443 3455555676654 444443 110 000 00 022344 44
Q ss_pred HHHcCcEEeecC------CEEEEeCCcccCHHHHHHHHHhhhccc
Q psy8199 607 ALKNELLLRPIG------NTVYLMPPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 607 l~~~Gi~~~~~~------~~lR~~p~~~~t~~~i~~~~~~l~~~~ 645 (965)
+.++||.+.|+. +.+|++-.. .+++++++.++++.+.+
T Consensus 384 ~~~~gV~v~PG~~F~~~~~~~Rls~~~-~~~~~i~~~~~~l~~~~ 427 (433)
T PRK06855 384 LASTGICVVPLSSFCTELNGFRVTLLE-RDEEKFEWIYQTLAEKI 427 (433)
T ss_pred HHHcCEEEecCCcCCCCCCceEEEECC-CcHHHHHHHHHHHHHHH
Confidence 668899998852 368999432 48899999998887654
|
|
| >PRK04870 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.8e-17 Score=186.17 Aligned_cols=318 Identities=12% Similarity=0.133 Sum_probs=204.2
Q ss_pred CcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCC-CeEEEcCChhHHHHHHH
Q psy8199 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKL-GHCFYGSDGASAVEVAL 331 (965)
Q Consensus 253 G~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~-~~v~~~~sGseA~~~Al 331 (965)
++.++|+..| .++++ .+|++++++.+.+..... ..|+.....+|.+.++++++... +++++++|+++++..++
T Consensus 25 ~~~~i~l~~~--~~~~~-~~~~~~~~~~~~~~~~~~---~~Y~~~~~~~lr~~ia~~~~~~~~~~I~~t~G~~~~i~~~~ 98 (356)
T PRK04870 25 ATGMVKLDAM--ENPYR-LPAELRAELGERLAEVAL---NRYPDPRAAALKAALRAAMGVPAGADVLLGNGSDELIQLLA 98 (356)
T ss_pred CCCceeCcCC--CCCCC-CCHHHHHHHHHHhhcccc---ccCCCCCHHHHHHHHHHHhCcCCCCcEEEcCCHHHHHHHHH
Confidence 5678888766 34555 588999999988764211 12223334677777777776443 48999999999999888
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHH
Q psy8199 332 KMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDL 411 (965)
Q Consensus 332 ~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l 411 (965)
++... +++.|++.+++|.++...+...+ ..++.+|..+. +. .|++++
T Consensus 99 ~~~~~--------~gd~vlv~~P~y~~~~~~~~~~g-------------~~~~~i~~~~~-~~-----------~d~~~l 145 (356)
T PRK04870 99 LACAK--------PGATVLAPEPGFVMYRMSAKLAG-------------LEFVGVPLTAD-FT-----------LDLPAM 145 (356)
T ss_pred HHhcC--------CCCEEEECCCCHHHHHHHHHHcC-------------CEEEEecCCCC-CC-----------CCHHHH
Confidence 76632 56889999999987633222221 12333333211 11 267888
Q ss_pred HHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCccee---e
Q psy8199 412 EILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL---C 488 (965)
Q Consensus 412 e~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDiv---t 488 (965)
++++... ++.+|++.. ++|++|.+. +.+.+++|.++| ++++|+||+|..|... .+. ....-.++++ +
T Consensus 146 ~~~~~~~--~~~~v~l~~-p~NPtG~~~-~~~~~~~i~~~~---~~~ii~De~y~~~~~~-~~~--~~~~~~~~vi~~~S 215 (356)
T PRK04870 146 LAAIAEH--RPALVFLAY-PNNPTGNLF-DDADVERIIEAA---PGLVVVDEAYQPFAGD-SWL--PRLARFPNLLVMRT 215 (356)
T ss_pred HHHhhcC--CCCEEEEcC-CCCCCCCCC-CHHHHHHHHHHC---CCEEEEECCchhhcCc-chH--HHHhhCCCEEEEec
Confidence 8888632 344444443 489999877 556677777776 7899999999877421 111 1111123343 6
Q ss_pred eccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHHHc
Q psy8199 489 LSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN-KDNILQRISQDMKKITKALTS 567 (965)
Q Consensus 489 ~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~-~~~~~~~~~~~~~~l~~~L~~ 567 (965)
||| .+..++++|++++++++++.+..- ...++.+.++++++..+|+... -++..++++++.+++.+.|++
T Consensus 216 ~SK-~~~~GlRiG~~i~~~~~i~~~~~~--------~~~~~~~~~~q~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~ 286 (356)
T PRK04870 216 VSK-LGLAGLRLGYLAGHPAWIAELDKV--------RPPYNVNVLTQATALFALEHVDVLDAQAAQLRAERTRLAAALAA 286 (356)
T ss_pred chh-hhhHHHhhhhhhCCHHHHHHHHHc--------cCCCcCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 899 433228999999999999887651 1234567888888877775321 122445566666666666654
Q ss_pred ccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec-------CCEEEEeCCcccCHHHHHHHHHh
Q psy8199 568 LITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-------GNTVYLMPPYILNKNEIQHMTSA 640 (965)
Q Consensus 568 l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-------~~~lR~~p~~~~t~~~i~~~~~~ 640 (965)
+ +++...+..|.++.+.+. + ...+.+.|.++||.++++ .+++|++ ..+.++.++++++
T Consensus 287 ~---~~~~~~~~~~~~~~~~~~--~-------~~~~~~~l~~~gI~v~~~~~f~~~~~~~iRis---~~~~~~~~~l~~a 351 (356)
T PRK04870 287 L---PGVTVFPSAANFILVRVP--D-------AAAVFDGLKTRGVLVKNLSGMHPLLANCLRVT---VGTPEENAQFLAA 351 (356)
T ss_pred C---CCcEECCCCCeEEEEECC--C-------HHHHHHHHHHCCEEEEECCCCCCCCCCeEEEe---CCCHHHHHHHHHH
Confidence 4 455444556777766552 1 245778889999999863 2589999 3478889988888
Q ss_pred hhc
Q psy8199 641 IFQ 643 (965)
Q Consensus 641 l~~ 643 (965)
+.+
T Consensus 352 l~~ 354 (356)
T PRK04870 352 LKA 354 (356)
T ss_pred HHH
Confidence 764
|
|
| >PRK05166 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.8e-17 Score=186.89 Aligned_cols=320 Identities=13% Similarity=0.101 Sum_probs=202.5
Q ss_pred CcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHH
Q psy8199 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALK 332 (965)
Q Consensus 253 G~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~ 332 (965)
+..++|+..| .+++| .+|.+.+++.+.......| +...-.+|.+.+++.++.+.+++++++|+++++..++.
T Consensus 35 ~~~~i~l~~~--~~~~~-~~~~~~~al~~~~~~~~~Y-----~~~~g~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~ 106 (371)
T PRK05166 35 VPRIAKLGSN--ENPLG-PSPAVRRAFADIAELLRLY-----PDPQGRALREAIAARTGVPADRIILGNGSEDLIAVICR 106 (371)
T ss_pred CcceEEcCCC--CCCCC-CCHHHHHHHHHHHHHhhcC-----CCCcHHHHHHHHHHHhCcCHHHEEEcCCHHHHHHHHHH
Confidence 4478998876 34566 5788998887755443222 22222367777888877677899999999999988887
Q ss_pred HHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHH
Q psy8199 333 MSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLE 412 (965)
Q Consensus 333 ~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le 412 (965)
... .+++.|++.+++|.++.......+ ..+..++..... . .|+++++
T Consensus 107 ~~~--------~~gd~vli~~P~y~~~~~~~~~~g-------------~~~~~v~~~~~~-~-----------~~~~~l~ 153 (371)
T PRK05166 107 AVL--------RPGDRVVTLYPSFPLHEDYPTMMG-------------ARVERVTVTPDL-G-----------FDLDALC 153 (371)
T ss_pred Hhc--------CCCCEEEEcCCChHHHHHHHHHcC-------------CeEEEeecCCCC-C-----------CCHHHHH
Confidence 653 256789999999976632221111 123333332111 1 2577888
Q ss_pred HHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccccc-cccccc-CCCccee---
Q psy8199 413 ILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKF-FACEHA-EIWPDFL--- 487 (965)
Q Consensus 413 ~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~-~~~~~~-~~~pDiv--- 487 (965)
+++.+. ....++.+| +|++|.+. +.+.+++|.++|++ ++++|+||+|..|-..+.. ...... ...++++
T Consensus 154 ~~~~~~--~~~v~l~~p--~NPtG~~~-~~~~~~~l~~~~~~-~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~vi~i~ 227 (371)
T PRK05166 154 AAVARA--PRMLMFSNP--SNPVGSWL-TADQLARVLDATPP-ETLIVVDEAYAEYAAGDDYPSALTLLKARGLPWIVLR 227 (371)
T ss_pred HhhhcC--CCEEEEeCC--CCCCCCCC-CHHHHHHHHHhCCC-CcEEEEECcHHHhcCCcCcccHHHHHhhcCCCEEEEe
Confidence 877542 223445566 89999877 66668888888865 8999999999877422211 111111 1223444
Q ss_pred eeccccC-CCcccceeeee-cHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHH
Q psy8199 488 CLSKGIT-GGYLPLSLVMT-TDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN-KDNILQRISQDMKKITKA 564 (965)
Q Consensus 488 t~sK~l~-gG~~pig~v~~-~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~-~~~~~~~~~~~~~~l~~~ 564 (965)
+|||.++ .| +++|++++ ++++++.+.. ....++.+.+++.++.++|..-. -+...+..+++.+++.+.
T Consensus 228 SfSK~~~l~G-lRiG~~i~~~~~l~~~~~~--------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~ 298 (371)
T PRK05166 228 TFSKAYGLAG-LRVGYGLVSDPELVGLLDR--------VRTPFNVNGAAQAAALAALDDEEHLAKGVALALAERERLKKE 298 (371)
T ss_pred echHhhhcch-hheeeeecCCHHHHHHHHH--------hccCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 5899887 56 89999765 6788887754 12345678888888888874210 012334455556666666
Q ss_pred HHcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec-----CCEEEEeCCcccCHHHHHHHHH
Q psy8199 565 LTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-----GNTVYLMPPYILNKNEIQHMTS 639 (965)
Q Consensus 565 L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-----~~~lR~~p~~~~t~~~i~~~~~ 639 (965)
|++. ++...++.|+++.+.+. .+ ...+.+.|.++||.+.|+ .+++|++. .+.++.+.+.+
T Consensus 299 L~~~----g~~~~p~~g~fl~~~~~-~~-------~~~l~~~l~~~gi~v~p~~~~~~~~~iRi~~---~~~~~~~~l~~ 363 (371)
T PRK05166 299 LAEM----GYRIAPSRANFLFFDAR-RP-------ASAVAEALLRQGVIVKPWKQPGFETFIRVSI---GSPEENDHFVA 363 (371)
T ss_pred HHHC----cCeeCCCcCCEEEEeCC-CC-------HHHHHHHHHHCCeEEecCCCCCCCCeEEEEc---CCHHHHHHHHH
Confidence 6554 33334566777766542 11 346788888999999875 26899993 35556666666
Q ss_pred hhhc
Q psy8199 640 AIFQ 643 (965)
Q Consensus 640 ~l~~ 643 (965)
+++.
T Consensus 364 ~l~~ 367 (371)
T PRK05166 364 ALDK 367 (371)
T ss_pred HHHH
Confidence 6543
|
|
| >PRK06959 putative threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.5e-17 Score=184.47 Aligned_cols=300 Identities=12% Similarity=0.076 Sum_probs=198.0
Q ss_pred cccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCC-CCeEEEcCChhHHHHHHHH
Q psy8199 254 KRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYK-LGHCFYGSDGASAVEVALK 332 (965)
Q Consensus 254 ~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~-~~~v~~~~sGseA~~~Al~ 332 (965)
.+++|+.++. +++|...+.+.. ..+ ..|+... .+|.+.+++.++.. .++|++++|++|++.....
T Consensus 24 ~~~i~ls~Ne--np~~~~~~~~~~---~~~--------~~Yp~~~-~~L~~~ia~~~~~~~~~~I~i~~Gs~e~i~~l~~ 89 (339)
T PRK06959 24 DAWLDLSTGI--NPHGYPVPPVPA---DAW--------RRLPEDD-DGLAACAARYYGAPDAAHVLPVAGSQAAIRALPA 89 (339)
T ss_pred hhhceeccCC--CCCCCCCCCCCH---HHH--------HhCCCch-HHHHHHHHHHhCCCCcccEEECcCHHHHHHHHHH
Confidence 5789998884 788876433321 111 1244444 78999999998765 4799999999999975543
Q ss_pred HHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHH
Q psy8199 333 MSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLE 412 (965)
Q Consensus 333 ~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le 412 (965)
+. .++ .+++.+++|.++...+...+. .+..++.. .+.++
T Consensus 90 ~~---------~~g-~v~v~~P~y~~y~~~~~~~g~-------------~~~~v~~~------------------~~~~~ 128 (339)
T PRK06959 90 LL---------PRG-RVGIAPLAYSEYAPAFARHGH-------------RVVPLDEA------------------ADTLP 128 (339)
T ss_pred hc---------CCC-eEEEcCCCcHHHHHHHHHCCC-------------EEEeeccc------------------chhcc
Confidence 22 133 488899999887443333221 12222210 01111
Q ss_pred HHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCccee---ee
Q psy8199 413 ILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL---CL 489 (965)
Q Consensus 413 ~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDiv---t~ 489 (965)
+ ....+++++| +|++|.+. +.+.++++.+.|+++++++|+||+|..|... . ......+ .++++ ||
T Consensus 129 ~------~~~~v~l~nP--nNPTG~~~-s~~~l~~l~~~~~~~~~~vI~DEay~~~~~~-~-s~~~~~~-~~~vi~l~Sf 196 (339)
T PRK06959 129 A------ALTHLIVVNP--NNPTAERL-PAARLLRWHAQLAARGGTLIVDEAFADTLPA-A-SLAAHTD-RPGLVVLRSV 196 (339)
T ss_pred c------cCCEEEEeCC--CCCCCCCC-CHHHHHHHHHHHHHcCCEEEEECCCccCCCc-c-cchhccC-CCCEEEEecC
Confidence 1 1125788888 89999876 6666888888899999999999999877421 1 1111111 24554 68
Q ss_pred ccccC-CCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHHHc
Q psy8199 490 SKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN-KDNILQRISQDMKKITKALTS 567 (965)
Q Consensus 490 sK~l~-gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~-~~~~~~~~~~~~~~l~~~L~~ 567 (965)
||.++ .| +++|++++++++++.+.. ....++.+.++++++.++|+--. .+...+.+++..+++.+.|++
T Consensus 197 SK~~gl~G-lRiGy~v~~~~li~~l~~--------~~~~~~vs~~~q~a~~~~L~~~~~~~~~~~~~~~~r~~l~~~L~~ 267 (339)
T PRK06959 197 GKFFGLAG-VRAGFVLAAPALLAALRD--------ALGAWTVSGPARHAVRAAFADAAWQAAMRERLAADGARLAALLRA 267 (339)
T ss_pred hhhcCCcc-hheEEEecCHHHHHHHHH--------hcCCCCCcHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99887 45 899999999999998876 12356678899999999885211 123456666677777777766
Q ss_pred ccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecC--CEEEEeCCcccCHHHHHHHHHhhhccc
Q psy8199 568 LITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG--NTVYLMPPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 568 l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~--~~lR~~p~~~~t~~~i~~~~~~l~~~~ 645 (965)
+ ++. +.+.++++.+.+. + ...+.+.|.++||+++..+ +++|++ +..+.++.+.+++++.+..
T Consensus 268 ~----g~~-~~~~~~f~~~~~~--~-------~~~l~~~l~~~GI~vr~~~~~~~lRis--i~~~~~e~~~l~~al~~~~ 331 (339)
T PRK06959 268 H----GFA-VHATPLFSWTDDP--R-------AAALHAALARRGIWTRYFAPPPSVRFG--LPADEAEWQRLEDALAECV 331 (339)
T ss_pred C----CCC-ccCcceEEEEeCC--C-------HHHHHHHHHhCCeEEEECCCCCeEEEE--CCCCHHHHHHHHHHHHHHH
Confidence 5 222 2234555555432 1 3467889999999998754 689999 4467788999988886544
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.1e-17 Score=198.20 Aligned_cols=346 Identities=12% Similarity=0.073 Sum_probs=220.2
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCC---eEEEcCC
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLG---HCFYGSD 322 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~---~v~~~~s 322 (965)
.++.+.+|..+|++..|. +.++ .+|.+.+|+.+.+....+ ..+..+....+++++++..+...+ ++++++|
T Consensus 689 ~~~~~~~g~~vI~LsinE--~d~p-pPp~V~eAi~eal~~~~~---s~g~pdlr~aLa~~la~~~Gv~~d~~e~IIvt~G 762 (1082)
T PLN02672 689 LSVSGSQESSLIHMDVDE--SFLP-VPSAVKASIFESFVRQNI---SESETDPRPSILQFIKSNYGFPTDSCTEFVYGDT 762 (1082)
T ss_pred cCCcccCCCCEEEEeCCC--CCCC-CCHHHHHHHHHHHhhcCC---CCCChHHHHHHHHHHHHHhCcCCCCCCEEEEeCC
Confidence 577888899999998773 4566 688999999887765322 223455688999999998776554 7999999
Q ss_pred hhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhH
Q psy8199 323 GASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANE 402 (965)
Q Consensus 323 GseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (965)
+++++..++....+ +++.|++..++|..+...+...+. .+..+|.....+..
T Consensus 763 s~elL~lll~aLl~--------pGD~VLVp~PtY~~Y~~~a~~~Ga-------------~vv~Vpl~~e~gf~------- 814 (1082)
T PLN02672 763 SLALFNKLVLCCVQ--------EGGTLCFPAGSNGTYVSAAKFLKA-------------NFRRIPTKSSDGFK------- 814 (1082)
T ss_pred HHHHHHHHHHHHcC--------CCCEEEEeCCChHHHHHHHHHcCC-------------EEEEEecccccCCC-------
Confidence 88888888776643 568999999999888544333322 23344432111111
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccc---ccc-
Q psy8199 403 IARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFF---ACE- 478 (965)
Q Consensus 403 ~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~---~~~- 478 (965)
.|+++|++++... ...+.+++.| .+|++|.+. +.+.+++|.++|++||+++|+||+|.++-..+... .+.
T Consensus 815 ---lD~d~Le~al~~~-~~~~I~L~nP-nhNPTG~v~-S~eeLe~Llela~k~di~VIsDEaYsdL~Fd~~~~s~~sl~s 888 (1082)
T PLN02672 815 ---LTAKTLASTLETV-KKPWVYISGP-TINPTGLLY-SNSEIEEILSVCAKYGARVIIDTSFSGLEYDTSGWGGWDLKS 888 (1082)
T ss_pred ---CCHHHHHHHhccC-CCCEEEEECc-CCCCcCccC-CHHHHHHHHHHHHHcCCEEEEeCCCCccccCCCCCcccchhh
Confidence 2678888887532 2346778888 448999765 78889999999999999999999998775544321 110
Q ss_pred ---cc-CCCc--cee---eeccccCCCcccceeeeecH-HHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcc
Q psy8199 479 ---HA-EIWP--DFL---CLSKGITGGYLPLSLVMTTD-KIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKD 548 (965)
Q Consensus 479 ---~~-~~~p--Div---t~sK~l~gG~~pig~v~~~~-~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~ 548 (965)
.+ ...+ .++ +|||.++.+++++|++++++ ++++.+..- . .....+..+..+++++++.++. +..
T Consensus 889 ~l~~~~~~sks~nVIvL~SfSKkf~lpGLRIGylIap~~eLi~~l~~~---~--~~s~~~~~~q~Aaaaalall~~-~~~ 962 (1082)
T PLN02672 889 ILSRLKSSNPSFAVALLGGLSTELLSGGHEFGFLALNDSVLIDAFHSA---P--GLSRPHSTLKYTIKKLLGLKNQ-KSS 962 (1082)
T ss_pred HHHHhccccCCceEEEEeCcHHhhccHHHHheeEEeCCHHHHHHHHHh---h--hhcCCCcHHHHHHHHHHHHHhc-cCc
Confidence 11 1112 233 68996655449999999864 488877541 0 0111112223344444433310 111
Q ss_pred -------cHHHHHHHHHHHHHHHHHcccCCCceeeeeceeEEEEEEEeecC-------ccc-----hhhHHHHHHHHHHH
Q psy8199 549 -------NILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIED-------PEQ-----IETFSKKFFVAALK 609 (965)
Q Consensus 549 -------~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~G~~~~i~~~~~~-------~~~-----~~~~~~~~~~~l~~ 609 (965)
+..+.++++.+++.+.|++. ++...++.|.|+.+.....- ... .......+++.|++
T Consensus 963 ~~~~~l~e~r~~Lk~rRd~L~e~L~~~----Gi~v~~PeGGFfLwl~l~~~l~~~~~~~~~~~~~~~~lds~efae~LLe 1038 (1082)
T PLN02672 963 DLLDGVAEQKKILKSRAERLKETLEAC----GWDVLEPQGGISMVAKPSAYLGKTVKLKSIDGDTGIKLDSSNIREAILK 1038 (1082)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHC----CCeEecCCcEEEEEEEccccccccccccccccccccCCCHHHHHHHHHH
Confidence 22344566666666666553 45566778777766532000 000 00123467788876
Q ss_pred c-CcEEeec-----CCEEEEeCCcccCHHHHHHHHHhhhc
Q psy8199 610 N-ELLLRPI-----GNTVYLMPPYILNKNEIQHMTSAIFQ 643 (965)
Q Consensus 610 ~-Gi~~~~~-----~~~lR~~p~~~~t~~~i~~~~~~l~~ 643 (965)
+ ||.+.|+ .+++||+ +..++++++++++++.+
T Consensus 1039 e~GVaV~PGs~FG~~g~~RIs--fa~~~e~LeeALerL~k 1076 (1082)
T PLN02672 1039 STGLCINSSSWTGIPGYCRFS--FALEDSEFDRALKAIAR 1076 (1082)
T ss_pred cCCEEEecCcccCCCCeEEEE--ecCCHHHHHHHHHHHHH
Confidence 5 9999884 2689999 66788899999988765
|
|
| >PRK07379 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=8.2e-18 Score=188.87 Aligned_cols=205 Identities=13% Similarity=0.169 Sum_probs=160.8
Q ss_pred eccCCCCCCCCCCCCCCcCCCCcccccC-C----CHHHHHHHHHHHHH--CCCCEEEEeeccCCCCcccHHHHHHHHHHH
Q psy8199 687 IKTGGCTEDCGYCPQSTHYNTEITATKI-L----SIESVITAAQKAKS--DGATRFCMGAAWRELKDRDLDNIENMICEV 759 (965)
Q Consensus 687 ~~s~~C~~~C~fC~~~~~~~~~~~~~~~-~----~~eei~~~~~~~~~--~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i 759 (965)
+.-..|+..|.||.|.........+.+. . =.+.+.++++.... .+++.++|.||.. ...+.+.+.++++.+
T Consensus 15 iHiPFC~~~C~YC~f~~~~~~~~~~~~~~~~~~~Y~~~L~~Ei~~~~~~~~~i~~iy~GGGTp--s~l~~~~l~~ll~~i 92 (400)
T PRK07379 15 IHIPFCRRRCFYCDFPISVVGDRTRGGTSGLIEEYVEVLCQEIAITPSFGQPLQTVFFGGGTP--SLLSVEQLERILTTL 92 (400)
T ss_pred EEeccccCcCCCCCCccccccccccccccchHHHHHHHHHHHHHHhhccCCceeEEEECCCcc--ccCCHHHHHHHHHHH
Confidence 3346799999999986531111000000 0 13456666654322 2578888877743 334567777777777
Q ss_pred Hhc-------CcEeEEecCCCCHHHHHHHHHhCCCeEeccCCC-CHHHHhcccCCCCHHHHHHHHHHHHHcCCc-eeeeE
Q psy8199 760 KKI-------GLETCLTLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGIN-ICCGG 830 (965)
Q Consensus 760 ~~~-------~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~~es-~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~-v~~~~ 830 (965)
++. .+.+.++++.++.+.++.|+++|++++++|+|| ++++++.+.+.++.++..++++.++++|+. ++..+
T Consensus 93 ~~~~~~~~~~eit~E~~P~~lt~e~l~~l~~~GvnrislGvQS~~d~~L~~l~R~~~~~~~~~ai~~l~~~G~~~v~~dl 172 (400)
T PRK07379 93 DQRFGIAPDAEISLEIDPGTFDLEQLQGYRSLGVNRVSLGVQAFQDELLALCGRSHRVKDIFAAVDLIHQAGIENFSLDL 172 (400)
T ss_pred HHhCCCCCCCEEEEEeCCCcCCHHHHHHHHHCCCCEEEEEcccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEEe
Confidence 652 234456788999999999999999999999999 999999999999999999999999999997 89999
Q ss_pred EEec-CCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCCC------CCCCHHHHHHHHHHHHHHCCC
Q psy8199 831 IIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGS------SILDPLEFIRTIAVARITMPT 895 (965)
Q Consensus 831 i~Gl-~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~~------~~~~~~~~~~~ia~~R~~lp~ 895 (965)
|+|+ |||.+++.++++.+.+++ ++.|+++.++|.|||++.+. ..++.++..++...++..|..
T Consensus 173 I~GlPgqt~e~~~~tl~~~~~l~--p~~is~y~L~~~pgT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~L~~ 242 (400)
T PRK07379 173 ISGLPHQTLEDWQASLEAAIALN--PTHLSCYDLVLEPGTAFGKQYQPGKAPLPSDETTAAMYRLAQEILTQ 242 (400)
T ss_pred ecCCCCCCHHHHHHHHHHHHcCC--CCEEEEecceecCCchhHHHhhcCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 9999 699999999999999999 99999999999999998752 456788888898888888753
|
|
| >PRK10874 cysteine sulfinate desulfinase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=7.3e-17 Score=184.35 Aligned_cols=336 Identities=12% Similarity=0.073 Sum_probs=211.8
Q ss_pred CcccccccccchhccCCCCCHHHHHHHHHHHhhcccc-ccC-----CCCcHHHHHHHHHHHhhcCC-CCCeEEEcCChhH
Q psy8199 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHV-MLS-----NLTHKPVIKLSEKLSSLTQY-KLGHCFYGSDGAS 325 (965)
Q Consensus 253 G~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~-~~~-----~~~~~~~~~la~~l~~~~~~-~~~~v~~~~sGse 325 (965)
+..|||..+. |-.++.+.+++.+.+...... +.. ....+...++.+.++++++. ..+.|+|++|+++
T Consensus 19 ~~~yld~a~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~~i~~~~~~t~ 92 (401)
T PRK10874 19 AGVYLDSAAT------ALKPQAVIEATQQFYSLSAGNVHRSQFAAAQRLTARYEAAREQVAQLLNAPDAKNIVWTRGTTE 92 (401)
T ss_pred ceEEEeCCcc------cCCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCHHH
Confidence 5679997664 336788999998887653111 100 01233456788889999986 6779999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHH
Q psy8199 326 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIAR 405 (965)
Q Consensus 326 A~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (965)
++..+++..... ...++++||+.++.|++........ .......+..+|.+... .
T Consensus 93 ~i~~~~~~~~~~----~~~~gd~vl~~~~~~~s~~~~~~~~---------~~~~g~~v~~v~~~~~~-~----------- 147 (401)
T PRK10874 93 SINLVAQSYARP----RLQPGDEIIVSEAEHHANLVPWLMV---------AQQTGAKVVKLPLGADR-L----------- 147 (401)
T ss_pred HHHHHHHHhhhc----cCCCcCEEEECCcchHHHHHHHHHH---------HHHhCCEEEEEecCCCC-c-----------
Confidence 999998865310 0035678999998886631100000 00011233444443211 1
Q ss_pred HHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcc
Q psy8199 406 CAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPD 485 (965)
Q Consensus 406 ~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pD 485 (965)
.|++++++.+. +++.+|++.. +++++|.+.| +++|.++|+++|+++|+|++|. +|.. ........+|
T Consensus 148 ~d~~~l~~~i~---~~t~lv~i~~-~~n~tG~~~~----~~~i~~l~~~~g~~~ivD~a~~-~g~~----~~~~~~~~~d 214 (401)
T PRK10874 148 PDVDLLPELIT---PRTRILALGQ-MSNVTGGCPD----LARAITLAHQAGMVVMVDGAQG-AVHF----PADVQALDID 214 (401)
T ss_pred CCHHHHHHhcC---cCcEEEEEeC-CcccccCcCC----HHHHHHHHHHcCCEEEEECCcc-cccc----cCCchhcCCC
Confidence 36788888885 3455566655 6899999987 8999999999999999999995 4332 1222234578
Q ss_pred eeeec--cccCCCcccceeeeecHHHHHhhhcc--CCc--------------ccccccCCCCCCHHHHHHHHHHHHHHhc
Q psy8199 486 FLCLS--KGITGGYLPLSLVMTTDKIYNSIYYK--NNI--------------NIFLHSHSYSGNPLACCAALATLEIFNK 547 (965)
Q Consensus 486 ivt~s--K~l~gG~~pig~v~~~~~i~~~~~~~--~~~--------------~~~~~~~t~~~~~~~~aaa~a~L~~~~~ 547 (965)
++++| |.++- ..+|++++++++++.+..- +.. .+... ..-+.|..++++..++++.+.+
T Consensus 215 ~~~~s~~K~~gp--~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-e~Gt~~~~~~~al~~al~~l~~ 291 (401)
T PRK10874 215 FYAFSGHKLYGP--TGIGVLYGKSELLEAMSPWQGGGKMLTEVSFDGFTPQSAPWRF-EAGTPNVAGVIGLSAALEWLAD 291 (401)
T ss_pred EEEEecccccCC--CccEEEEEchHHHhcCCCeecCCcceEeeccCccCCCCChhhc-cCCCcCHHHHHHHHHHHHHHHH
Confidence 88766 95432 3478888999988765420 000 00000 0012355577777777776654
Q ss_pred cc---HHHHHHHHHHHHHHHHHcccCCCceeeee-ceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec------
Q psy8199 548 DN---ILQRISQDMKKITKALTSLITHPKIINFR-QKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI------ 617 (965)
Q Consensus 548 ~~---~~~~~~~~~~~l~~~L~~l~~~~~i~~v~-g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~------ 617 (965)
.+ ..++.+++.+++.+.|+++ |++..+. ..+.++.+.+. . .. ...+.+.|.++||.++++
T Consensus 292 ~g~~~~~~~~~~l~~~l~~~l~~~---~g~~~~~~~~~~i~~~~~~--~----~~-~~~~~~~L~~~gI~v~~g~~~~~~ 361 (401)
T PRK10874 292 IDINQAESWSRSLATLAEDALAKL---PGFRSFRCQDSSLLAFDFA--G----VH-HSDLVTLLAEYGIALRAGQHCAQP 361 (401)
T ss_pred hCHHHHHHHHHHHHHHHHHHHhcC---CCEEEeCCCCCcEEEEEEC--C----cC-HHHHHHHHHHCCcEEeccccchHH
Confidence 32 4556666667777766544 4554332 33446666553 1 11 245777888999998752
Q ss_pred -------CCEEEEeCCcccCHHHHHHHHHhhhccc
Q psy8199 618 -------GNTVYLMPPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 618 -------~~~lR~~p~~~~t~~~i~~~~~~l~~~~ 645 (965)
.+.+|+++....++++++.+++.+.+.+
T Consensus 362 ~~~~~g~~~~iRiS~~~~nt~edid~ll~al~~~~ 396 (401)
T PRK10874 362 LLAALGVTGTLRASFAPYNTQSDVDALVNAVDRAL 396 (401)
T ss_pred HHHHhCCCCEEEEEecccCCHHHHHHHHHHHHHHH
Confidence 2589999999999999999999887643
|
|
| >PTZ00376 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=2e-17 Score=188.51 Aligned_cols=339 Identities=10% Similarity=0.047 Sum_probs=203.7
Q ss_pred CcccccccccchhccCCCCCHHHHHHHHHHH----h--hccccccCCCCcHHHHHHHHHHHhhcC--CCCCeEEE--cCC
Q psy8199 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQL----N--KLEHVMLSNLTHKPVIKLSEKLSSLTQ--YKLGHCFY--GSD 322 (965)
Q Consensus 253 G~~ylD~~~~~~~~~lGh~~p~v~~av~~~~----~--~~~~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~--~~s 322 (965)
+...+|+..|.... +. .++.+.+++.+++ . ....|....+..+.++.+++.+.+..+ ...++|.+ +++
T Consensus 28 ~~~~i~l~~g~~~~-~~-~~~~~~~~~~~a~~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~v~~~~t~G 105 (404)
T PTZ00376 28 SPSKVNLGIGAYRD-EN-GKPYVLESVRKAEKIIAEKNLDKEYLPIEGLQSFIEAAQKLLFGEASYALAEKRIATVQALS 105 (404)
T ss_pred CcccEecccceeEC-CC-CCEehhhHHHHHHHHhccccCCCCCCCCCCCHHHHHHHHHHhcCCCccccccCeEEEeeccC
Confidence 44668887764211 11 1223344444443 2 122344445666677777777655432 24568884 899
Q ss_pred hhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecC-CCCCCCCCCCChh
Q psy8199 323 GASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITT-PDSRNINKGNSAN 401 (965)
Q Consensus 323 GseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 401 (965)
|++|+..++.+.+.+. .+++.|++.+++|+++.......+. .+..+|. ++....
T Consensus 106 ~~~al~~~~~~l~~~~-----~~Gd~Vlv~~P~y~~~~~~~~~~G~-------------~~~~v~l~~~~~~~------- 160 (404)
T PTZ00376 106 GTGALRLGFEFLKRFL-----PAGTTVYVSNPTWPNHVNIFKSAGL-------------NVKEYRYYDPKTKG------- 160 (404)
T ss_pred cchHHHHHHHHHHHhc-----CCCCEEEEcCCCchhHHHHHHHcCC-------------ceeeccccCcccCC-------
Confidence 9999999887554331 3568999999999998543333332 2333333 111111
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccc---cccccc
Q psy8199 402 EIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTG---KFFACE 478 (965)
Q Consensus 402 ~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G---~~~~~~ 478 (965)
.|++.+++++++...+..++++.. ++|++|.+. +.+.+++|.++|++||+++|.||+|.+|...+ ......
T Consensus 161 ----~d~~~l~~~~~~~~~~~~~~~~~~-p~NPTG~~~-s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~ 234 (404)
T PTZ00376 161 ----LDFDGMLEDLRTAPNGSVVLLHAC-AHNPTGVDP-TEEQWKEIADVMKRKNLIPFFDMAYQGFASGDLDKDAYAIR 234 (404)
T ss_pred ----cCHHHHHHHHHhCCCCCEEEEeCC-CCCCCCCCC-CHHHHHHHHHHHHhCCcEEEEehhhcCccCCCHHHHHHHHH
Confidence 367888888865433334555444 499999876 78889999999999999999999999875432 111111
Q ss_pred cc-CCCccee---eeccccC-CCcccceee---eecHHHHHhhhccCCcccccccCCCC-CCHHHHHHHHHHHHHHh---
Q psy8199 479 HA-EIWPDFL---CLSKGIT-GGYLPLSLV---MTTDKIYNSIYYKNNINIFLHSHSYS-GNPLACCAALATLEIFN--- 546 (965)
Q Consensus 479 ~~-~~~pDiv---t~sK~l~-gG~~pig~v---~~~~~i~~~~~~~~~~~~~~~~~t~~-~~~~~~aaa~a~L~~~~--- 546 (965)
.+ ...++++ +|||.++ .| +++|++ ++++++++.+... .. ....+++. .+++++.++.++|+.-.
T Consensus 235 ~~~~~~~~vi~i~SfSK~~~~~G-lRvG~~~~~~~~~~~~~~l~~~--~~-~~~~~~~~~~~~~~q~~~~~~l~~~~~~~ 310 (404)
T PTZ00376 235 LFAERGVEFLVAQSFSKNMGLYG-ERIGALHIVCANKEEAANVLSQ--LK-LIIRPMYSSPPIHGARIADRILSDPELRA 310 (404)
T ss_pred HHHhcCCcEEEEEeCCCcccccc-cccceEEEEeCCHHHHHHHHHH--HH-HHHhhhcCCCchHHHHHHHHHhCCHHHHH
Confidence 11 1122444 6899887 56 899998 5677655543220 00 01123333 46788888888884211
Q ss_pred -----cccHHHHHHHHHHHHHHHHHcccCCC-ceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHc-CcEEeecCC
Q psy8199 547 -----KDNILQRISQDMKKITKALTSLITHP-KIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKN-ELLLRPIGN 619 (965)
Q Consensus 547 -----~~~~~~~~~~~~~~l~~~L~~l~~~~-~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~-Gi~~~~~~~ 619 (965)
-....++++++.+.+.+.|++. ..+ .+....+.|.|+.+.-. ...+++.|.++ ||.+.|++
T Consensus 311 ~~~~~~~~~~~~~~~~r~~l~~~L~~~-~~~~~~~~~~p~gg~f~~~~~----------~~~~~~~L~~~~~v~v~p~~- 378 (404)
T PTZ00376 311 EWLSELKEMSGRIQNMRQLLYDELKAL-GSPGDWEHIINQIGMFSFTGL----------TKEQVERLIEKYHIYLLDNG- 378 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCcccccccCceEEEecCC----------CHHHHHHHHHhCCEeecCCC-
Confidence 0122345566677777777665 222 23344566666555322 12455666655 99999874
Q ss_pred EEEEeCCcc-cCHHHHHHHHHhhhcc
Q psy8199 620 TVYLMPPYI-LNKNEIQHMTSAIFQT 644 (965)
Q Consensus 620 ~lR~~p~~~-~t~~~i~~~~~~l~~~ 644 (965)
|++ +. .+.++++.+++++...
T Consensus 379 --Ris--~~~~~~~~~~~~~~~l~~~ 400 (404)
T PTZ00376 379 --RIS--VAGLTSKNVDYVAEAIHDV 400 (404)
T ss_pred --eEE--EeccCHHhHHHHHHHHHHH
Confidence 888 43 7899999999998754
|
|
| >TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA | Back alignment and domain information |
|---|
Probab=99.78 E-value=7.2e-17 Score=184.23 Aligned_cols=335 Identities=11% Similarity=0.066 Sum_probs=210.5
Q ss_pred CcccccccccchhccCCCCCHHHHHHHHHHHhhccccc-cCCC-----CcHHHHHHHHHHHhhcCCC-CCeEEEcCChhH
Q psy8199 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVM-LSNL-----THKPVIKLSEKLSSLTQYK-LGHCFYGSDGAS 325 (965)
Q Consensus 253 G~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~-~~~~-----~~~~~~~la~~l~~~~~~~-~~~v~~~~sGse 325 (965)
+..|||..+. |..++.+.+++.+.+....... ...+ ..+...++.+.++++++.. .+.|+|++|+|+
T Consensus 16 ~~iyld~a~~------~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~~i~~t~g~t~ 89 (398)
T TIGR03392 16 GTVYLDSAAT------ALKPQAVIDATQQFYRLSSGTVHRSQHQQAQSLTARYELARQQVARFLNAPDAENIVWTRGTTE 89 (398)
T ss_pred CeEEeeCccc------cCCCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCChHH
Confidence 4689997664 3367899999988775421110 0111 1234567888899988763 679999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHH
Q psy8199 326 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIAR 405 (965)
Q Consensus 326 A~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (965)
++..++...... ...++++|++.++.|++....... ........+..+|.+.. +.
T Consensus 90 ~l~~~~~~~~~~----~~~~gd~Vl~~~~~~~s~~~~~~~---------~~~~~g~~v~~v~~~~~-~~----------- 144 (398)
T TIGR03392 90 SINLVAQSYARP----RLQPGDEIIVSEAEHHANLIPWLM---------VAQQTGAKVVKLPIGAD-LL----------- 144 (398)
T ss_pred HHHHHHHHhhhc----cCCCCCEEEECCcchhHHHHHHHH---------HHHHcCcEEEEEecCCC-CC-----------
Confidence 999998765210 002567899999888763110000 00111123444444321 11
Q ss_pred HHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcc
Q psy8199 406 CAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPD 485 (965)
Q Consensus 406 ~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pD 485 (965)
.|++++++++.+ ++.+|++.. ++|++|.+.+ +++|.++|+++|+++|+|++|. +|.. ........+|
T Consensus 145 ~~~~~l~~~i~~---~t~lv~i~~-~~n~tG~~~~----~~~i~~~~~~~~~~~ivD~a~~-~~~~----~~~~~~~~~d 211 (398)
T TIGR03392 145 PDIRQLPELLTP---RTRILALGQ-MSNVTGGCPD----LARAITLAHQYGAVVVVDGAQG-VVHG----PPDVQALDID 211 (398)
T ss_pred cCHHHHHHHhcc---CceEEEEEC-ccccccccCC----HHHHHHHHHHcCCEEEEEhhhh-cCCC----CCChhhcCCC
Confidence 367888888853 455566655 6999999987 8899999999999999999996 4322 1222234579
Q ss_pred eeeec--cccCCCcccceeeeecHHHHHhhhcc--CCcc--------------cc-cccCCCCCCHHHHHHHHHHHHHHh
Q psy8199 486 FLCLS--KGITGGYLPLSLVMTTDKIYNSIYYK--NNIN--------------IF-LHSHSYSGNPLACCAALATLEIFN 546 (965)
Q Consensus 486 ivt~s--K~l~gG~~pig~v~~~~~i~~~~~~~--~~~~--------------~~-~~~~t~~~~~~~~aaa~a~L~~~~ 546 (965)
+.++| |.++. ..+|++++++++++.+..- +... +. ...+ +.|..+++++.++++.+.
T Consensus 212 ~~~~s~~K~~gp--~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~G--T~~~~~~~a~~~al~~l~ 287 (398)
T TIGR03392 212 FYAFSGHKLYGP--TGIGVLYGKTELLEAMPPWQGGGKMLSHVSFDGFIPQAVPHRFEAG--TPNIAGVIGLSAALEWLT 287 (398)
T ss_pred EEEEecccccCC--CceEEEEEcHHHHhhCCCeecCCceEeeccccccccCCChhhccCC--CCCHHHHHHHHHHHHHHH
Confidence 99888 95432 3589999999887765320 0000 00 0011 234557777778887765
Q ss_pred cc---cHHHHHHHHHHHHHHHHHcccCCCceeee-eceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec-----
Q psy8199 547 KD---NILQRISQDMKKITKALTSLITHPKIINF-RQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI----- 617 (965)
Q Consensus 547 ~~---~~~~~~~~~~~~l~~~L~~l~~~~~i~~v-~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~----- 617 (965)
+. ...++.+++.+++.+.|.++ +++... ...+.++.+.+. . . ....+.+.|.++||.++++
T Consensus 288 ~~g~~~i~~~~~~l~~~l~~~l~~l---~g~~~~~~~~~~i~~~~~~--~----~-~~~~l~~~L~~~gI~v~~g~~~~~ 357 (398)
T TIGR03392 288 DIDIAAAEAWSVSLADLAEERLAQL---PGFRSFRCPGSSLLAFDFA--G----V-HHSDLAALLAESGIALRAGQHCAQ 357 (398)
T ss_pred HhCHHHHHHHHHHHHHHHHHHHhcC---CCeEEeCCCCCcEEEEEeC--C----c-CHHHHHHHHHhCCEEEecCccchH
Confidence 43 34455666666666666554 444322 123445555543 1 1 1235777888999998753
Q ss_pred --------CCEEEEeCCcccCHHHHHHHHHhhhccc
Q psy8199 618 --------GNTVYLMPPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 618 --------~~~lR~~p~~~~t~~~i~~~~~~l~~~~ 645 (965)
++.+|++++...|++|++.+++.+.+.+
T Consensus 358 ~~~~~~g~~~~iRvS~~~~~t~~ei~~l~~~l~~~~ 393 (398)
T TIGR03392 358 PLMAALGVSGTLRASFAPYNTQQDVDALVDAVGAAL 393 (398)
T ss_pred HHHHHhCCCCEEEEEeeccCCHHHHHHHHHHHHHHH
Confidence 2589999999999999999999887643
|
Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems. |
| >PLN02231 alanine transaminase | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.1e-17 Score=188.70 Aligned_cols=329 Identities=15% Similarity=0.172 Sum_probs=209.4
Q ss_pred CHHHHHHHHHHHhhc-----cccccCCCCcHHHHHHHHHHHhhcC--CCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCC
Q psy8199 272 NSYINKALKNQLNKL-----EHVMLSNLTHKPVIKLSEKLSSLTQ--YKLGHCFYGSDGASAVEVALKMSFHYWYNKGFL 344 (965)
Q Consensus 272 ~p~v~~av~~~~~~~-----~~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~ 344 (965)
+.++++++.+.+... ..|+.+.+..+.+..+++.+.+..+ .+.++|++|+|+++|+..++++... .
T Consensus 142 p~~~i~~a~~~l~~~~~~~~~~Y~~s~G~~~lReaIA~~~~~r~g~~~~pe~I~iT~Ga~~ai~~~~~~l~~-------~ 214 (534)
T PLN02231 142 SADAIERAWQILDQIPGRATGAYSHSQGIKGLRDAIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR-------S 214 (534)
T ss_pred CHHHHHHHHHHHHhcCCccccCcCCCCCcHHHHHHHHHHHHhccCCCCCcccEEEeCCHHHHHHHHHHHhcc-------C
Confidence 456666666666541 2244455666777788888776543 4567999999999999999997743 2
Q ss_pred CceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhC---CCc
Q psy8199 345 NKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKN---HNK 421 (965)
Q Consensus 345 ~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~---~~~ 421 (965)
+++.|++..++|.++.......++ ..+.++........ .|+++|++++++. ..+
T Consensus 215 ~gd~Vli~~P~Y~~y~~~~~~~g~-------------~~v~~~l~~~~~~~----------~d~~~Le~~l~~~~~~~~~ 271 (534)
T PLN02231 215 EKDGILCPIPQYPLYSASIALHGG-------------TLVPYYLDEATGWG----------LEISELKKQLEDARSKGIT 271 (534)
T ss_pred CCCEEEEeCCCChhHHHHHHHcCC-------------EEEEEecCcccCCC----------CCHHHHHHHHHHHhhcCCC
Confidence 568899999999988544333322 12233321110000 2678888888642 113
Q ss_pred EE-EEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcc-cccc-ccccc----CC---Cccee---e
Q psy8199 422 IA-AIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRT-GKFF-ACEHA----EI---WPDFL---C 488 (965)
Q Consensus 422 ~a-aii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~-G~~~-~~~~~----~~---~pDiv---t 488 (965)
+. .++++| +|++|.+. +.+.+++|.++|++||+++|+||+|..+-.. +..+ .+... |. ...++ +
T Consensus 272 ~k~ivl~nP--~NPTG~vl-s~e~l~~Iv~~a~~~~l~lI~DEvY~~l~y~~~~~~~s~~~~~~~~g~~~~~~~vi~l~S 348 (534)
T PLN02231 272 VRALVVINP--GNPTGQVL-AEENQRDIVEFCKQEGLVLLADEVYQENVYVPDKKFHSFKKVARSMGYGEKDISLVSFQS 348 (534)
T ss_pred eEEEEEeCC--CCCCCcCC-CHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCcccHHHHHhhhccccCCceEEEEec
Confidence 44 566666 89999766 7888999999999999999999999987442 3221 21111 11 12345 6
Q ss_pred eccccCC--Ccccceeeee---cHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHH-------H----h-cccHH
Q psy8199 489 LSKGITG--GYLPLSLVMT---TDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEI-------F----N-KDNIL 551 (965)
Q Consensus 489 ~sK~l~g--G~~pig~v~~---~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~-------~----~-~~~~~ 551 (965)
|||++.| | +++|++++ ++++++.+.. ....+.+.+.++++++..+++- . + .+.+.
T Consensus 349 ~SK~~~g~pG-lRiGy~~~~~~~~~l~~~l~k-------~~~~~~~s~~~~Q~~~~~~l~~p~~~~~~y~~~~~~~~~i~ 420 (534)
T PLN02231 349 VSKGYYGECG-KRGGYMEVTGFTSDVREQIYK-------VASVNLCSNISGQILASLVMSPPKPGDESYESYMAEKDGIL 420 (534)
T ss_pred cCcccccCCc-cceEEEEEecCCHHHHHHHHH-------HHhhhcCCChHHHHHHHHHhCCCCCCcchHHHHHHHHHHHH
Confidence 7998743 5 89999876 6788887765 1223345567778877777731 1 0 11234
Q ss_pred HHHHHHHHHHHHHHHcccCCCceeeeeceeEEEEEE-EeecCcc-ch-----hhHHHHHHHHHH-HcCcEEeecC-----
Q psy8199 552 QRISQDMKKITKALTSLITHPKIINFRQKGMIWAFD-VIIEDPE-QI-----ETFSKKFFVAAL-KNELLLRPIG----- 618 (965)
Q Consensus 552 ~~~~~~~~~l~~~L~~l~~~~~i~~v~g~G~~~~i~-~~~~~~~-~~-----~~~~~~~~~~l~-~~Gi~~~~~~----- 618 (965)
+.++++.+.+.+.|+++ +++...++.|.|+.+. +.-.... .. ......++..++ +.||.+.|+.
T Consensus 421 ~~~~~r~~~l~~~L~~~---~gi~~~~p~Ggfylw~~l~lp~~~~~~~~~~~~~~d~~~~~~Ll~~~GV~vvPGs~Fg~~ 497 (534)
T PLN02231 421 SSLARRAKTLEDALNSL---EGVTCNKAEGAMYLFPRIHLPQKAIKAAEAAKTAPDAFYCKRLLNATGIVVVPGSGFGQV 497 (534)
T ss_pred HHHHHHHHHHHHHHhcC---CCceecCCCeeeEEeccccCcHHHHHHHhhcCCCcHHHHHHHHHHhcCEEEeCCcccCCC
Confidence 56666777777777654 5677778889988872 2100000 00 000122445454 6799998842
Q ss_pred ---CEEEEeCCcccCHHHHHHHHHhhhcccc
Q psy8199 619 ---NTVYLMPPYILNKNEIQHMTSAIFQTFN 646 (965)
Q Consensus 619 ---~~lR~~p~~~~t~~~i~~~~~~l~~~~~ 646 (965)
.++|++ +..+++++++.++++.+...
T Consensus 498 ~g~~~~Rit--~~~~~e~l~eal~RL~~~~~ 526 (534)
T PLN02231 498 PGTWHFRCT--ILPQEDKIPAIVSRLTEFHK 526 (534)
T ss_pred CCCCeEEEE--eCCCHHHHHHHHHHHHHHHH
Confidence 359998 67788999999999876443
|
|
| >PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.1e-17 Score=182.37 Aligned_cols=321 Identities=11% Similarity=0.003 Sum_probs=203.6
Q ss_pred ecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcC---CCCCeEEEcCChhHH
Q psy8199 250 TFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQ---YKLGHCFYGSDGASA 326 (965)
Q Consensus 250 d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~---~~~~~v~~~~sGseA 326 (965)
..++..++|+..|. +....+|.+.+++.+..... .|....+..+.+..+++.+.+..+ .+.+++++|+|+++|
T Consensus 23 ~~~~~~~i~l~~~~---p~~~~~~~~~~~~~~~~~~~-~Y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~~I~it~G~~~~ 98 (364)
T PRK07865 23 AAHPDGIVDLSVGT---PVDPVPPVIQEALAAAADAP-GYPTTAGTPELREAIVGWLARRRGVTGLDPAAVLPVIGSKEL 98 (364)
T ss_pred HhcCCCEEEcCCCC---CCCCCCHHHHHHHHHHHhhC-CCCCccCCHHHHHHHHHHHHHHcCCCCCCcccEEEccChHHH
Confidence 34556788988774 33434688888887655432 343344556777888888877654 346799999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHH
Q psy8199 327 VEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARC 406 (965)
Q Consensus 327 ~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (965)
+..++.++.. .+++.|++.+++|.++.......+ ...++.+
T Consensus 99 i~~~~~~l~~-------~~gd~Vl~~~p~y~~~~~~~~~~g---------------~~~~~~~----------------- 139 (364)
T PRK07865 99 VAWLPTLLGL-------GPGDVVVIPELAYPTYEVGARLAG---------------ATVVRAD----------------- 139 (364)
T ss_pred HHHHHHHHcC-------CCCCEEEECCCCcccHHHHHHhcC---------------CEEEecC-----------------
Confidence 9887665411 256889999999987733322221 1122221
Q ss_pred HHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccccccc-ccc--cCC-
Q psy8199 407 AIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFA-CEH--AEI- 482 (965)
Q Consensus 407 d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~-~~~--~~~- 482 (965)
++++++. .++.+|++++ ++|++|.+. +.+.+++|.++|++||+++|.||+|..|...+.... ... .+.
T Consensus 140 ~~~~l~~------~~~~~v~~~~-p~NPtG~~~-~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~ 211 (364)
T PRK07865 140 SLTELGP------QRPALIWLNS-PSNPTGRVL-GVDHLRKVVAWARERGAVVASDECYLELGWDAEPVSILDPRVCGGD 211 (364)
T ss_pred ChhhCCc------ccceEEEEcC-CCCCCCccC-CHHHHHHHHHHHHHcCCEEEEecchhhhccCCCCCccccccccCCc
Confidence 1222221 3455666665 699999877 677799999999999999999999987754443211 111 011
Q ss_pred Cccee---eeccccC-CCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh-cccHHHHHHHH
Q psy8199 483 WPDFL---CLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN-KDNILQRISQD 557 (965)
Q Consensus 483 ~pDiv---t~sK~l~-gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~-~~~~~~~~~~~ 557 (965)
.+.++ +|||.++ .| +++|++++++++++.+.. .....+++.++++++++.++|+..+ .+...+.++++
T Consensus 212 ~~~~i~~~S~SK~~~~~G-lRiG~i~~~~~~~~~~~~------~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~ 284 (364)
T PRK07865 212 HTGLLAVHSLSKQSNLAG-YRAGFVAGDPALVAELLE------VRKHAGMMVPAPVQAAMVAALGDDAHVREQRERYARR 284 (364)
T ss_pred cceEEEEeechhccCCCc-eeeEEEecCHHHHHHHHH------HHHhcCCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 12333 6899885 34 899999999999887764 1222345567888888877774211 01233444555
Q ss_pred HHHHHHHHHcccCCCceeeeeceeEEE-EEEEeecCccchhhHHHHHHHHHHHcCcEEeec-------CCEEEEeCCccc
Q psy8199 558 MKKITKALTSLITHPKIINFRQKGMIW-AFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-------GNTVYLMPPYIL 629 (965)
Q Consensus 558 ~~~l~~~L~~l~~~~~i~~v~g~G~~~-~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-------~~~lR~~p~~~~ 629 (965)
.+.+.+.|++. ++....+.|.++ .+.+. . ....+.+.|.++||.+.|+ .+++|++ +..
T Consensus 285 ~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~--~------~~~~~~~~l~~~gv~v~pg~~f~~~~~~~iRi~--~~~ 350 (364)
T PRK07865 285 RAVLRPALEAA----GFRVDHSEAGLYLWATRG--E------DCWDTVAWLAERGILVAPGDFYGPAGAQHVRVA--LTA 350 (364)
T ss_pred HHHHHHHHHHc----CCcccCCCccEEEEEeCC--C------CHHHHHHHHHHCCEEEeCccccCcCCCCEEEEE--ecC
Confidence 55555555543 343344555544 33332 1 1234667888999999873 2589999 445
Q ss_pred CHHHHHHHHHhhh
Q psy8199 630 NKNEIQHMTSAIF 642 (965)
Q Consensus 630 t~~~i~~~~~~l~ 642 (965)
++++++++++++.
T Consensus 351 ~~~~~~~~~~~l~ 363 (364)
T PRK07865 351 TDERIAAAVERLA 363 (364)
T ss_pred CHHHHHHHHHHhh
Confidence 7899999988764
|
|
| >PRK08599 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=7.3e-18 Score=189.26 Aligned_cols=199 Identities=14% Similarity=0.166 Sum_probs=158.3
Q ss_pred CCCCCCCCCCCCCCcCCCCcccccCCCHHHHHHHHHHHHHC---CCCEEEEeeccCCCCcccHHHHHHHHHHHHhc----
Q psy8199 690 GGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSD---GATRFCMGAAWRELKDRDLDNIENMICEVKKI---- 762 (965)
Q Consensus 690 ~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~---g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~---- 762 (965)
..|+.+|.||.++...... ......++.++++++.+... +++.+++.+|. | ...+.+++.++++.+++.
T Consensus 9 PfC~~~C~yC~~~~~~~~~--~~~~~y~~~l~~Ei~~~~~~~~~~i~~i~~gGGt-p-t~l~~~~l~~ll~~i~~~~~~~ 84 (377)
T PRK08599 9 PFCEHICYYCDFNKVFIKN--QPVDEYLDALIKEMNTYAIRPFDKLKTIYIGGGT-P-TALSAEQLERLLTAIHRNLPLS 84 (377)
T ss_pred CCcCCCCCCCCCeeeccCc--cCHHHHHHHHHHHHHHhhhcCCCceeEEEeCCCC-c-ccCCHHHHHHHHHHHHHhCCCC
Confidence 5699999999987642221 11113468888888665544 56777776553 3 234466777777777652
Q ss_pred ---CcEeEEecCCCCHHHHHHHHHhCCCeEeccCCC-CHHHHhcccCCCCHHHHHHHHHHHHHcCCc-eeeeEEEec-CC
Q psy8199 763 ---GLETCLTLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGIN-ICCGGIIGL-SE 836 (965)
Q Consensus 763 ---~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~~es-~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~-v~~~~i~Gl-~e 836 (965)
.+.+.++++.++.+.++.|+++|++++++|+|| +++.++.+++.++.++..++++.++++|++ ++.++|+|+ ||
T Consensus 85 ~~~eit~e~~p~~l~~e~l~~l~~~G~~rvsiGvqS~~~~~l~~l~r~~~~~~~~~~i~~l~~~g~~~v~~dli~GlPgq 164 (377)
T PRK08599 85 GLEEFTFEANPGDLTKEKLQVLKDSGVNRISLGVQTFNDELLKKIGRTHNEEDVYEAIANAKKAGFDNISIDLIYALPGQ 164 (377)
T ss_pred CCCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEeeecCCCCC
Confidence 234566889999999999999999999999999 999999999999999999999999999997 789999999 79
Q ss_pred CHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCCC------CCCCHHHHHHHHHHHHHHCC
Q psy8199 837 SRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGS------SILDPLEFIRTIAVARITMP 894 (965)
Q Consensus 837 t~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~~------~~~~~~~~~~~ia~~R~~lp 894 (965)
|.+++.++++.+.+++ ++.+.++.++|.|||++... +.++.+...++...++..+.
T Consensus 165 t~~~~~~~l~~~~~l~--~~~i~~y~l~~~pgT~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~ 226 (377)
T PRK08599 165 TIEDFKESLAKALALD--IPHYSAYSLILEPKTVFYNLMRKGKLRLPGEDLEAEMYEYLMDEME 226 (377)
T ss_pred CHHHHHHHHHHHHccC--CCEEeeeceeecCCChhHHHHhcCCCCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999 99999999999999998742 23456666777777776664
|
|
| >PRK08354 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=8.1e-17 Score=176.83 Aligned_cols=295 Identities=16% Similarity=0.164 Sum_probs=190.4
Q ss_pred cCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHH
Q psy8199 251 FSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVA 330 (965)
Q Consensus 251 ~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~A 330 (965)
.+...++|+..+ .++++ +|.+.+++.+.++... .++ ....+.+.+++.++ +++++|+|+++|+..+
T Consensus 5 ~~~~~~i~l~~~--~np~~--p~~~~~a~~~~~~~~~-----~yp--~~~~l~~~ia~~~~---~~I~vt~G~~~al~~~ 70 (311)
T PRK08354 5 IREEGLIDFSAS--VNPYP--PEWLDEMFERAKEISG-----RYT--YYEWLEEEFSKLFG---EPIVITAGITEALYLI 70 (311)
T ss_pred CCccceeEecCC--CCCCC--CHHHHHHHHHHHHHhh-----cCC--ChHHHHHHHHHHHC---CCEEECCCHHHHHHHH
Confidence 344568998876 45665 5889999987765432 222 23567888888875 4799999999999877
Q ss_pred HHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHH
Q psy8199 331 LKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFD 410 (965)
Q Consensus 331 l~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 410 (965)
+.++ .+++.|++.+++|.++...+...+.+ + ++.+ .|++.
T Consensus 71 ~~~~---------~~gd~vlv~~P~y~~~~~~~~~~g~~-------------~--~~~~----------------~d~~~ 110 (311)
T PRK08354 71 GILA---------LRDRKVIIPRHTYGEYERVARFFAAR-------------I--IKGP----------------NDPEK 110 (311)
T ss_pred HHhh---------CCCCeEEEeCCCcHHHHHHHHHcCCE-------------E--eecC----------------CCHHH
Confidence 6433 24678999999998885444333321 1 1111 14677
Q ss_pred HHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCccee---
Q psy8199 411 LEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL--- 487 (965)
Q Consensus 411 le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDiv--- 487 (965)
|++.+++ ....++++| +|++|.+. +.+.+++|.++|++||+++|+||+|.+|...+... . .+.++
T Consensus 111 l~~~~~~---~~~vi~~~P--~NPTG~~~-~~~~l~~l~~~a~~~~~~li~De~y~~f~~~~~~~-----~-~~~vi~~~ 178 (311)
T PRK08354 111 LEELVER---NSVVFFCNP--NNPDGKFY-NFKELKPLLDAVEDRNALLILDEAFIDFVKKPESP-----E-GENIIKLR 178 (311)
T ss_pred HHHhhcC---CCEEEEecC--CCCCCCcc-CHHHHHHHHHHhhhcCcEEEEeCcchhcccccccc-----C-CCcEEEEe
Confidence 7777642 235677787 89999866 77789999999999999999999998874332211 1 23344
Q ss_pred eeccccC-CCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Q psy8199 488 CLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALT 566 (965)
Q Consensus 488 t~sK~l~-gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~ 566 (965)
+|||.++ .| +++|++++ +.+.+.. ....+..+.++++++.+.++ +. .++++++.+++.+..+
T Consensus 179 S~SK~~~l~G-lRiG~~v~---~~~~l~~--------~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~ 241 (311)
T PRK08354 179 TFTKSYGLPG-IRVGYVKG---FEEAFRS--------VRMPWSIGSTGYAFLEFLIE----DD-FEHLRKTMPLIWREKE 241 (311)
T ss_pred ccHhhcCCcc-ceeeeeee---hHHHHHH--------cCCCccCCHHHHHHHHHHHH----hH-HHHHHHHHHHHHHHHH
Confidence 6899887 56 89999998 4444443 11234445666665555543 11 2344444444444443
Q ss_pred cccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecC-----CEEEEeCCcccCHHHHHHHHHhh
Q psy8199 567 SLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG-----NTVYLMPPYILNKNEIQHMTSAI 641 (965)
Q Consensus 567 ~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~-----~~lR~~p~~~~t~~~i~~~~~~l 641 (965)
.+.... ...+.|.|+.+++. + ..++.+.|.++||.++|+. +++||+ ....++.+++.+++
T Consensus 242 ~l~~~l---~~~~~~~~~~~~~~--~-------~~~~~~~l~~~gv~v~~g~~f~~~~~iRi~---~~~~~~~~~l~~al 306 (311)
T PRK08354 242 RFEKAL---YVKSDANFFIKDVG--D-------AEKFVEFLKRNGILVRDCTSFGLPGYIRFS---VRDREENEKLIRAL 306 (311)
T ss_pred HHHHhc---CCCCCCcEEEEECC--C-------HHHHHHHHHHCCeEEEecccCCCCCeEEEE---eCCHHHHHHHHHHH
Confidence 331111 23566777766542 1 3457788899999999853 689999 44555667776666
Q ss_pred hc
Q psy8199 642 FQ 643 (965)
Q Consensus 642 ~~ 643 (965)
+.
T Consensus 307 ~~ 308 (311)
T PRK08354 307 RE 308 (311)
T ss_pred HH
Confidence 54
|
|
| >PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated | Back alignment and domain information |
|---|
Probab=99.78 E-value=1e-16 Score=183.30 Aligned_cols=336 Identities=10% Similarity=0.044 Sum_probs=211.6
Q ss_pred CcccccccccchhccCCCCCHHHHHHHHHHHhhccc-cccCCC-----CcHHHHHHHHHHHhhcCC-CCCeEEEcCChhH
Q psy8199 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEH-VMLSNL-----THKPVIKLSEKLSSLTQY-KLGHCFYGSDGAS 325 (965)
Q Consensus 253 G~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~-~~~~~~-----~~~~~~~la~~l~~~~~~-~~~~v~~~~sGse 325 (965)
+..|||..+.. ..++.+++++.+.+..... ...... ..+...++.+.++++++. +.++|+|++|+++
T Consensus 23 ~~iYld~a~~~------~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~ 96 (406)
T PRK09295 23 PLAYLDSAASA------QKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKQAALFINARSAEELVFVRGTTE 96 (406)
T ss_pred ceEEEeCcccc------cCCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHcCcCCCCeEEEeCCHHH
Confidence 45899987653 2678999999888764311 100111 223456788889998875 4679999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHH
Q psy8199 326 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIAR 405 (965)
Q Consensus 326 A~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (965)
++..+++..... ...++++|++.+..||+....... ........+..++.+.. +.
T Consensus 97 ~l~~~~~~~~~~----~~~~gd~vl~~~~~~~s~~~~~~~---------~~~~~g~~v~~v~~~~~-~~----------- 151 (406)
T PRK09295 97 GINLVANSWGNS----NVRAGDNIIISEMEHHANIVPWQM---------LCARVGAELRVIPLNPD-GT----------- 151 (406)
T ss_pred HHHHHHHHhhhh----cCCCcCEEEECcchhhHHHHHHHH---------HHHHcCcEEEEEecCCC-CC-----------
Confidence 999888754210 002457888888777664211000 00011123444443321 11
Q ss_pred HHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcc
Q psy8199 406 CAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPD 485 (965)
Q Consensus 406 ~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pD 485 (965)
.|+++|++++. +++.+|++.. ++|++|.+.| +++|.++|+++|+++|+|++|+ +|.. ........+|
T Consensus 152 ~d~~~l~~~i~---~~t~lv~l~~-~~n~tG~~~~----~~~i~~~~~~~~~~vivD~a~~-~g~~----~~~~~~~~~D 218 (406)
T PRK09295 152 LQLETLPALFD---ERTRLLAITH-VSNVLGTENP----LAEMIALAHQHGAKVLVDGAQA-VMHH----PVDVQALDCD 218 (406)
T ss_pred CCHHHHHHhcC---CCcEEEEEec-chhcccccCC----HHHHHHHHHHcCCEEEEEcccc-cCcc----ccCchhcCCC
Confidence 26788888875 3456666666 6899999988 8999999999999999999996 5432 1222234578
Q ss_pred eeeec--cccCCCcccceeeeecHHHHHhhhcc--CCcc--c--cccc----------CCCCCCHHHHHHHHHHHHHHhc
Q psy8199 486 FLCLS--KGITGGYLPLSLVMTTDKIYNSIYYK--NNIN--I--FLHS----------HSYSGNPLACCAALATLEIFNK 547 (965)
Q Consensus 486 ivt~s--K~l~gG~~pig~v~~~~~i~~~~~~~--~~~~--~--~~~~----------~t~~~~~~~~aaa~a~L~~~~~ 547 (965)
++++| |.+ |. ..+|++++++++++.+..- +... . .... -+-+.|..+++++.++|+.+.+
T Consensus 219 ~~~~s~~K~~-gp-~G~G~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~ 296 (406)
T PRK09295 219 FYVFSGHKLY-GP-TGIGILYVKEALLQEMPPWEGGGSMIATVSLTEGTTWAKAPWRFEAGTPNTGGIIGLGAALDYVSA 296 (406)
T ss_pred EEEeehhhcc-CC-CCcEEEEEchHhHhhCCCcccCCceeeeeecCCccccCCchhhcCCCCccHHHHHHHHHHHHHHHH
Confidence 88766 844 32 3578999998887654310 0000 0 0000 0113567788888889988765
Q ss_pred c---cHHHHHHHHHHHHHHHHHcccCCCceeeee--ceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec-----
Q psy8199 548 D---NILQRISQDMKKITKALTSLITHPKIINFR--QKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI----- 617 (965)
Q Consensus 548 ~---~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~--g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~----- 617 (965)
. .+.++.+++.+++.++|.++ +++.... ..+.++.+.+. . .....+.+.|.++||.++.+
T Consensus 297 ~g~~~i~~~~~~l~~~l~~~l~~~---~~~~~~~~~~~~~iv~~~~~--~-----~~~~~~~~~L~~~gI~v~~g~~c~~ 366 (406)
T PRK09295 297 LGLNNIAEYEQNLMHYALSQLESV---PDLTLYGPQNRLGVIAFNLG--K-----HHAYDVGSFLDNYGIAVRTGHHCAM 366 (406)
T ss_pred hCHHHHHHHHHHHHHHHHHHHhcC---CCEEEeCCCCCceEEEEEEC--C-----cCHHHHHHHHHhCCeEEeccccchH
Confidence 3 35566777777777777654 3333221 12445666553 1 11234667788999988642
Q ss_pred --------CCEEEEeCCcccCHHHHHHHHHhhhcc
Q psy8199 618 --------GNTVYLMPPYILNKNEIQHMTSAIFQT 644 (965)
Q Consensus 618 --------~~~lR~~p~~~~t~~~i~~~~~~l~~~ 644 (965)
.+.+|++|+...|++|++.+++++.+.
T Consensus 367 ~~~~~~~~~~~iRiS~~~ynt~~did~l~~~l~~i 401 (406)
T PRK09295 367 PLMAYYNVPAMCRASLAMYNTHEEVDRLVAGLQRI 401 (406)
T ss_pred HHHHHHCCCCEEEEEccCCCCHHHHHHHHHHHHHH
Confidence 147999999999999999999988653
|
|
| >PRK05799 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=6e-18 Score=189.91 Aligned_cols=200 Identities=20% Similarity=0.284 Sum_probs=157.6
Q ss_pred cCCCCCCCCCCCCCCcCCCCcccccCCCHHHHHHHHHHHHH-CCCCEEEEeeccCCCCcccHHHHHHHHHHHHhc----C
Q psy8199 689 TGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKS-DGATRFCMGAAWRELKDRDLDNIENMICEVKKI----G 763 (965)
Q Consensus 689 s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~-~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~----~ 763 (965)
-..|+.+|.||.+....+.. ......++.++++++.... .+++.+++.+|... ..+.+.+..+++.+++. +
T Consensus 10 iPfC~~~C~yC~~~~~~~~~--~~~~~y~~~l~~Ei~~~~~~~~~~~i~~gGGtps--~l~~~~l~~L~~~i~~~~~~~~ 85 (374)
T PRK05799 10 IPFCKQKCLYCDFPSYSGKE--DLMMEYIKALSKEIRNSTKNKKIKSIFIGGGTPT--YLSLEALEILKETIKKLNKKED 85 (374)
T ss_pred eCCccCCCCCCCCCcccCCc--chHHHHHHHHHHHHHhhcCCCceeEEEECCCccc--CCCHHHHHHHHHHHHhCCCCCC
Confidence 36699999999987642221 1111236778887765432 35778888766433 23345555555555442 2
Q ss_pred --cEeEEecCCCCHHHHHHHHHhCCCeEeccCCC-CHHHHhcccCCCCHHHHHHHHHHHHHcCCc-eeeeEEEec-CCCH
Q psy8199 764 --LETCLTLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGIN-ICCGGIIGL-SESR 838 (965)
Q Consensus 764 --~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~~es-~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~-v~~~~i~Gl-~et~ 838 (965)
+.+.+++..++++.++.|+++|++++++|+|| +++.++.+++.++.++..++++.++++|+. +++++|+|+ |||.
T Consensus 86 ~eitie~~p~~~t~e~l~~l~~~G~~rvsiGvqS~~d~~L~~l~R~~~~~~~~~ai~~l~~~g~~~v~~dli~GlPgqt~ 165 (374)
T PRK05799 86 LEFTVEGNPGTFTEEKLKILKSMGVNRLSIGLQAWQNSLLKYLGRIHTFEEFLENYKLARKLGFNNINVDLMFGLPNQTL 165 (374)
T ss_pred CEEEEEeCCCcCCHHHHHHHHHcCCCEEEEECccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCH
Confidence 33456788899999999999999999999999 999999999999999999999999999996 899999999 7999
Q ss_pred HHHHHHHHHHHhcCCCCCceeeccccccCCCCCCC------CCCCCHHHHHHHHHHHHHHCC
Q psy8199 839 DQRAELIFQLANLNPYPESVPINNLVQIKGTPLYG------SSILDPLEFIRTIAVARITMP 894 (965)
Q Consensus 839 ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~------~~~~~~~~~~~~ia~~R~~lp 894 (965)
+++.++++.+.+++ ++.+.++.++|.||||+++ ...++.++..++...++..|.
T Consensus 166 e~~~~~l~~~~~l~--~~~is~y~l~~~pgT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~l~ 225 (374)
T PRK05799 166 EDWKETLEKVVELN--PEHISCYSLIIEEGTPFYNLYENGKLKLPDEEEEREMYHYTIEFLK 225 (374)
T ss_pred HHHHHHHHHHHhcC--CCEEEEeccEecCCCHHHHHHhcCCCCCCChHHHHHHHHHHHHHHH
Confidence 99999999999999 9999999999999999864 234677788888888877764
|
|
| >TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.8e-17 Score=181.97 Aligned_cols=318 Identities=15% Similarity=0.166 Sum_probs=200.9
Q ss_pred CHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCC--eEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEE
Q psy8199 272 NSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLG--HCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKF 349 (965)
Q Consensus 272 ~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~--~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~v 349 (965)
.|.+.+++.... .+ ......+...++.+.+++.++...+ .+++++||+++++.++..... +++++
T Consensus 11 ~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~la~~~~~~~~~~~i~~~~~gt~~l~~~~~~~~~--------~~~~v 77 (355)
T TIGR03301 11 SATVRDAMLVDW---CH--WDSEFNDVTDQVRDRLLALAGGDDNHTCVLLQGSGTFAVEATIGSLVP--------RDGKL 77 (355)
T ss_pred CHHHHHHhhhhc---cC--CCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCcHHHHHHHHHhccC--------CCCeE
Confidence 566666665521 11 1111236678899999998875443 577899999999999987642 45677
Q ss_pred EEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEcc
Q psy8199 350 ICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEP 429 (965)
Q Consensus 350 i~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep 429 (965)
++..+++++....... .........++.+... . .|++++++++.+++ ++..|++-.
T Consensus 78 i~~~~~~~~~~~~~~a-----------~~~g~~~~~i~~~~~~-~-----------~d~~~l~~~l~~~~-~~~~v~~~~ 133 (355)
T TIGR03301 78 LVLINGAYGERLAKIC-----------EYLGIPHTDLNFSEYE-P-----------PDLNRIEEALAADP-DITHVATVH 133 (355)
T ss_pred EEECCCchhhHHHHHH-----------HHcCCceEEEecCCCC-C-----------CCHHHHHHHHHhCC-CceEEEEEe
Confidence 7777777665211110 0011123344432111 1 36788999887543 343443322
Q ss_pred ccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCccee--eeccccCCCcccceeeeecH
Q psy8199 430 LVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL--CLSKGITGGYLPLSLVMTTD 507 (965)
Q Consensus 430 ~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDiv--t~sK~l~gG~~pig~v~~~~ 507 (965)
+++++|.+.+ +++|.++|++||+++|+|++++ +|.. .+....+ ..|++ +++|+++|+ ..+|++++++
T Consensus 134 -~~~~~G~~~~----~~~i~~l~~~~~~~livD~~~s-~g~~--~~~~~~~--~~d~~~~s~~K~l~~~-~G~g~~~~~~ 202 (355)
T TIGR03301 134 -HETTTGILNP----LEAIAKVARSHGAVLIVDAMSS-FGAI--PIDIEEL--DVDALIASANKCLEGV-PGFGFVIARR 202 (355)
T ss_pred -cCCcccchhH----HHHHHHHHHHcCCEEEEEeccc-cCCc--ccchhhc--CccEEEecCCcccccC-CceeEEEECH
Confidence 3677888876 8999999999999999999886 6522 2333333 35654 678998765 3579999999
Q ss_pred HHHHhhhccCCccccc-------------ccCCCCCCHHHHHHHHHHHHHHhccc----HHHHHHHHHHHHHHHHHcccC
Q psy8199 508 KIYNSIYYKNNINIFL-------------HSHSYSGNPLACCAALATLEIFNKDN----ILQRISQDMKKITKALTSLIT 570 (965)
Q Consensus 508 ~i~~~~~~~~~~~~~~-------------~~~t~~~~~~~~aaa~a~L~~~~~~~----~~~~~~~~~~~l~~~L~~l~~ 570 (965)
++++.+.. ...++. ....++.++.++.++.++|+.+.+++ ..++.+++.+++.+.|+++ .
T Consensus 203 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~L~~~-g 279 (355)
T TIGR03301 203 DLLEASAG--NARSLYLDLYDQWAYMEKTGKWRFTPPTHTVYAFAQALEELEAEGGVPARIARYRRNRELLVDGLRAL-G 279 (355)
T ss_pred HHHHHhhC--CCCCceeeHHHHHHHhhhcCCCCCCCcHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHc-C
Confidence 98887652 111110 01234567788888888888775433 4566777888888888765 1
Q ss_pred CCcee-eeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecC----CEEEEeCCcccCHHHHHHHHHhhhcc
Q psy8199 571 HPKII-NFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG----NTVYLMPPYILNKNEIQHMTSAIFQT 644 (965)
Q Consensus 571 ~~~i~-~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~----~~lR~~p~~~~t~~~i~~~~~~l~~~ 644 (965)
...+. .....+.++.+.+. ... ......+.+.|.++||.+.++. +.+||+++..++.++++++++.+.++
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~l~~~gi~i~~~~~~~~~~iRis~~~~~~~~~i~~~~~~l~~~ 354 (355)
T TIGR03301 280 FQPLLPERWQSPIIVSFLYP-DDP---DFDFDDFYQELKERGFVIYPGKLTLADTFRIGTIGEIDAADIERLLEAIKDA 354 (355)
T ss_pred CeeecCCCCCCCcEEEEECC-CCC---cchHHHHHHHHHHCCEEEECCccccccEEEEecCCCCCHHHHHHHHHHHHhh
Confidence 11111 11223445555543 110 0113467888999999998753 68999988888999999999988653
|
This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different. |
| >PRK09257 aromatic amino acid aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.9e-17 Score=183.89 Aligned_cols=337 Identities=10% Similarity=0.016 Sum_probs=206.1
Q ss_pred ccccccccchhccCCCCC--HHHHHHHHHHHhhc--cccccCCCCcHHHHHHHHHHHhhcCC--CCCeE--EEcCChhHH
Q psy8199 255 RYLDAISSWWVNLFGHSN--SYINKALKNQLNKL--EHVMLSNLTHKPVIKLSEKLSSLTQY--KLGHC--FYGSDGASA 326 (965)
Q Consensus 255 ~ylD~~~~~~~~~lGh~~--p~v~~av~~~~~~~--~~~~~~~~~~~~~~~la~~l~~~~~~--~~~~v--~~~~sGseA 326 (965)
..+|+..|..+.+-++.+ +.+.+++.+.++.. ..|....+..+.++.+++.+.+..+. +.+++ +.|+|+++|
T Consensus 27 ~~i~l~~g~~~~~~~~~p~~~~l~~a~~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~i~v~iT~Ga~~a 106 (396)
T PRK09257 27 DKVNLGVGVYKDEQGRTPVLRAVKKAEARLLETETTKNYLPIEGLAAYRQAVQELLFGADSPALAAGRVATVQTPGGTGA 106 (396)
T ss_pred CcEecceeeEECCCCCEeccHHHHHHHHHhcccccCCCcCCCCCCHHHHHHHHHHhcCCCCcccccCeEEEEecCCccHH
Confidence 568888876433333333 67888887766432 23444556677777888777655321 45666 999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCC-CCCCCCCCCChhHHHH
Q psy8199 327 VEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTP-DSRNINKGNSANEIAR 405 (965)
Q Consensus 327 ~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 405 (965)
+..++++.... .+++.|++.+++|.++.......+. .++.+|.. .....
T Consensus 107 l~~~~~~l~~~------~pGd~Vlv~~P~y~~~~~~~~~~g~-------------~~v~v~~~~~~~~~----------- 156 (396)
T PRK09257 107 LRVGADFLKRA------FPDAKVWVSDPTWPNHRAIFEAAGL-------------EVKTYPYYDAATKG----------- 156 (396)
T ss_pred HHHHHHHHHHh------CCCCeEEECCCCcccHHHHHHHcCC-------------cEEEEeccccccCc-----------
Confidence 99998755321 2568999999999988443333222 33344431 11111
Q ss_pred HHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcc-cc-cccccc-cCC
Q psy8199 406 CAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRT-GK-FFACEH-AEI 482 (965)
Q Consensus 406 ~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~-G~-~~~~~~-~~~ 482 (965)
.|++++++++.+...+..++++.. .+|++|.+. +.+.+++|.++|++||+++|.||+|.+|... +. ...... .+.
T Consensus 157 ~d~~~l~~~~~~~~~~~~~~i~~~-p~NPTG~~~-s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~ 234 (396)
T PRK09257 157 LDFDAMLADLSQAPAGDVVLLHGC-CHNPTGADL-TPEQWDELAELLKERGLIPFLDIAYQGFGDGLEEDAYGLRAFAAA 234 (396)
T ss_pred cCHHHHHHHHHhCCCCCEEEEeCC-CCCCCCCCC-CHHHHHHHHHHHHhCCcEEEEeccccccccchHHHHHHHHHHHhc
Confidence 378888888865433344555444 599999876 7888999999999999999999999988532 11 111111 122
Q ss_pred Cccee---eeccccCC-Ccccceeeee---cHHH----HHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHH------
Q psy8199 483 WPDFL---CLSKGITG-GYLPLSLVMT---TDKI----YNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIF------ 545 (965)
Q Consensus 483 ~pDiv---t~sK~l~g-G~~pig~v~~---~~~i----~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~------ 545 (965)
.++++ +|||.++- | +++|++++ +++. +..+.. .......+.+++++.++.+.|+.-
T Consensus 235 ~~~vi~i~SfSK~~~~~G-lRiG~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~ 307 (396)
T PRK09257 235 GLELLVASSFSKNFGLYG-ERVGALSVVAEDAEEADRVLSQLKA------TIRTNYSNPPAHGAAIVATILNDPELRAEW 307 (396)
T ss_pred CCcEEEEEEcCCcCcccc-ccceeEEEEeCCHHHHHHHHHHHHH------HhhhhcCCCcHHHHHHHHHHhCCHHHHHHH
Confidence 23444 68998875 6 89999873 3333 333322 111222334677777777776421
Q ss_pred h--cccHHHHHHHHHHHHHHHHHcccCCCceeeeeceeEEEEE-EEeecCccchhhHHHHHHHHHHHcCcEEeecCCEEE
Q psy8199 546 N--KDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAF-DVIIEDPEQIETFSKKFFVAALKNELLLRPIGNTVY 622 (965)
Q Consensus 546 ~--~~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~G~~~~i-~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~lR 622 (965)
. -+...+.++++.+.+.+.|++...-..+....+.|.|+.+ .+. ...+.+.+.++||.+.|.+ |
T Consensus 308 ~~~~~~~r~~~~~rr~~l~~~L~~~~~~~~~~~~~p~gg~~~w~~l~----------~~~~~~l~~~~~V~~~p~~---r 374 (396)
T PRK09257 308 EAELEEMRERIKAMRQLLVEALKAKGPSRDFDFIARQRGMFSYSGLT----------PEQVDRLREEFGVYAVGSG---R 374 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccceEEEecCCC----------HHHHHHHHHcCCEEEcCCC---e
Confidence 0 0124455566666666666554110123444555555444 331 1233445568899998853 7
Q ss_pred EeCCcccCHHHHHHHHHhhhcc
Q psy8199 623 LMPPYILNKNEIQHMTSAIFQT 644 (965)
Q Consensus 623 ~~p~~~~t~~~i~~~~~~l~~~ 644 (965)
|+.+ ..++++++++++++.++
T Consensus 375 i~~~-~~~~~~i~~~~~~i~~~ 395 (396)
T PRK09257 375 INVA-GLNESNIDYVAEAIAAV 395 (396)
T ss_pred EEEe-eCCHHHHHHHHHHHHhh
Confidence 8732 38999999999988653
|
|
| >PRK05660 HemN family oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=2e-17 Score=184.61 Aligned_cols=198 Identities=12% Similarity=0.171 Sum_probs=156.4
Q ss_pred cCCCCCCCCCCCCCCcCCCCcccccCCC----HHHHHHHHHHHH----HCCCCEEEEeeccCCCCcccHHHHHHHHHHHH
Q psy8199 689 TGGCTEDCGYCPQSTHYNTEITATKILS----IESVITAAQKAK----SDGATRFCMGAAWRELKDRDLDNIENMICEVK 760 (965)
Q Consensus 689 s~~C~~~C~fC~~~~~~~~~~~~~~~~~----~eei~~~~~~~~----~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~ 760 (965)
-..|+.+|.||.+.+..... ..+ .+.++++++... ..+++.|+|.||.. ...+.+.+.++++.++
T Consensus 13 iPFC~~~C~yC~f~~~~~~~-----~~~~~~Y~~~l~~Ei~~~~~~~~~~~v~ti~~GGGtP--s~l~~~~l~~ll~~l~ 85 (378)
T PRK05660 13 IPWCVQKCPYCDFNSHALKG-----EVPEDEYVDHLLADLDADLPLVQGREVHSIFIGGGTP--SLFSAEAIQRLLDGVR 85 (378)
T ss_pred eCCccCcCCCCCCeecCCCC-----cCCHHHHHHHHHHHHHHHhHhccCCceeEEEeCCCcc--ccCCHHHHHHHHHHHH
Confidence 36799999999987542111 122 233444443211 24688899877743 3445677777777776
Q ss_pred h-----c--CcEeEEecCCCCHHHHHHHHHhCCCeEeccCCC-CHHHHhcccCCCCHHHHHHHHHHHHHcCCc-eeeeEE
Q psy8199 761 K-----I--GLETCLTLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGIN-ICCGGI 831 (965)
Q Consensus 761 ~-----~--~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~~es-~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~-v~~~~i 831 (965)
+ . .+.+.++++.++.+.++.|+++|++++++|+|| +++.++.+++.++.++.+++++.++++|+. ++..+|
T Consensus 86 ~~~~~~~~~eit~e~np~~l~~e~l~~Lk~~Gv~risiGvqS~~~~~L~~l~r~~~~~~~~~ai~~~~~~G~~~v~~dli 165 (378)
T PRK05660 86 ARLPFAPDAEITMEANPGTVEADRFVGYQRAGVNRISIGVQSFSEEKLKRLGRIHGPDEAKRAAKLAQGLGLRSFNLDLM 165 (378)
T ss_pred HhCCCCCCcEEEEEeCcCcCCHHHHHHHHHcCCCEEEeccCcCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEEee
Confidence 5 2 244566889999999999999999999999999 999999999999999999999999999995 689999
Q ss_pred Eec-CCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCCC--CCCCHHHHHHHHHHHHHHCCC
Q psy8199 832 IGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGS--SILDPLEFIRTIAVARITMPT 895 (965)
Q Consensus 832 ~Gl-~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~~--~~~~~~~~~~~ia~~R~~lp~ 895 (965)
+|+ ++|.+++.++++.+.+++ ++.+.++.++|.|||++... ..++.++...+...+...+..
T Consensus 166 ~Glpgqt~~~~~~~l~~~~~l~--p~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~L~~ 230 (378)
T PRK05660 166 HGLPDQSLEEALDDLRQAIALN--PPHLSWYQLTIEPNTLFGSRPPVLPDDDALWDIFEQGHQLLTA 230 (378)
T ss_pred cCCCCCCHHHHHHHHHHHHhcC--CCeEEeeccEeccCCcccccCCCCcCHHHHHHHHHHHHHHHHH
Confidence 999 699999999999999999 99999999999999999864 234566777777777776643
|
|
| >PRK09058 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.2e-17 Score=188.06 Aligned_cols=200 Identities=13% Similarity=0.184 Sum_probs=161.0
Q ss_pred CCCCCCCCCCCCCCcCCCCcccccCCCHHHHHHHHHHHHH------CCCCEEEEeeccCCCCcccHHHHHHHHHHHHhc-
Q psy8199 690 GGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKS------DGATRFCMGAAWRELKDRDLDNIENMICEVKKI- 762 (965)
Q Consensus 690 ~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~------~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~- 762 (965)
..|+.+|.||.|....... .......+.++++++...+ ..++.|+|.||. | ...+.+.+.++++.+++.
T Consensus 69 PFC~~~C~yC~f~~~~~~~--~~~~~Y~~~L~~Ei~~~~~~~~~~~~~i~~iy~GGGT-P-s~L~~~~l~~ll~~i~~~~ 144 (449)
T PRK09058 69 PFCRTHCTFCGFFQNAWNP--EAVARYTDALIRELAMEADSPLTQSAPIHAVYFGGGT-P-TALSAEDLARLITALREYL 144 (449)
T ss_pred CCcCCcCCCCCCcCcCCch--hhHHHHHHHHHHHHHHHhhccccCCCeeeEEEECCCc-c-ccCCHHHHHHHHHHHHHhC
Confidence 5699999999986531111 1111346777888776543 247778886664 2 345567777777777651
Q ss_pred ------CcEeEEecCCCCHHHHHHHHHhCCCeEeccCCC-CHHHHhcccCCCCHHHHHHHHHHHHHcC-CceeeeEEEec
Q psy8199 763 ------GLETCLTLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVG-INICCGGIIGL 834 (965)
Q Consensus 763 ------~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~~es-~~~~~~~i~~~~~~~~~~~~i~~~~~~G-i~v~~~~i~Gl 834 (965)
.+.+.+++..++++.++.|+++|++++++|+|| ++++++.+.+.++.++..++++.++++| ..+++.+|+|+
T Consensus 145 ~l~~~~eitiE~~p~~~t~e~l~~l~~aGvnRiSiGVQSf~d~vLk~lgR~~~~~~~~~~i~~l~~~g~~~v~~DlI~Gl 224 (449)
T PRK09058 145 PLAPDCEITLEGRINGFDDEKADAALDAGANRFSIGVQSFNTQVRRRAGRKDDREEVLARLEELVARDRAAVVCDLIFGL 224 (449)
T ss_pred CCCCCCEEEEEeCcCcCCHHHHHHHHHcCCCEEEecCCcCCHHHHHHhCCCCCHHHHHHHHHHHHhCCCCcEEEEEEeeC
Confidence 233555788899999999999999999999999 9999999999999999999999999999 58999999999
Q ss_pred -CCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCC------CCCC-CHHHHHHHHHHHHHHCCC
Q psy8199 835 -SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYG------SSIL-DPLEFIRTIAVARITMPT 895 (965)
Q Consensus 835 -~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~------~~~~-~~~~~~~~ia~~R~~lp~ 895 (965)
|+|.+++.++++.+.+++ ++.|.++.+.|.|||++++ .+++ +.++..++...++..|..
T Consensus 225 PgqT~e~~~~~l~~~~~l~--~~~is~y~L~~~pgT~l~~~~~~g~l~~~~~~~~~~~my~~~~~~L~~ 291 (449)
T PRK09058 225 PGQTPEIWQQDLAIVRDLG--LDGVDLYALNLLPGTPLAKAVEKGKLPPPATPAERADMYAYGVEFLAK 291 (449)
T ss_pred CCCCHHHHHHHHHHHHhcC--CCEEEEeccccCCCCHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 799999999999999999 9999999999999999875 2334 778888999998888753
|
|
| >TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase | Back alignment and domain information |
|---|
Probab=99.77 E-value=8.6e-18 Score=187.08 Aligned_cols=201 Identities=13% Similarity=0.140 Sum_probs=154.3
Q ss_pred cCCCCCCCCCCCCCCcCCCCcccccCCCHHHHHHHHHHH-HHCC---CCEEEEeeccCCCCcccHHHHHHHHHHHHh---
Q psy8199 689 TGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKA-KSDG---ATRFCMGAAWRELKDRDLDNIENMICEVKK--- 761 (965)
Q Consensus 689 s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~-~~~g---~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~--- 761 (965)
-..|+.+|.||.+....... .... .-.+.+.+++... ...+ ++.+++.||... ..+.+.+.++++.+++
T Consensus 7 iPFC~~~C~yC~f~~~~~~~-~~~~-~y~~~l~~Ei~~~~~~~~~~~v~~i~~GGGtPs--~l~~~~l~~ll~~i~~~~~ 82 (360)
T TIGR00539 7 IPFCENKCGYCDFNSYENKS-GPKE-EYTQALCQDLKHALSQTDQEPLESIFIGGGTPN--TLSVEAFERLFESIYQHAS 82 (360)
T ss_pred eCCCcCcCCCCCCcccCcCc-cCHH-HHHHHHHHHHHHHHHhcCCCcccEEEeCCCchh--cCCHHHHHHHHHHHHHhCC
Confidence 36799999999987642211 0000 0134444444432 2233 778888777432 3345666666655553
Q ss_pred --cC--cEeEEecCCCCHHHHHHHHHhCCCeEeccCCC-CHHHHhcccCCCCHHHHHHHHHHHHHcCCc-eeeeEEEec-
Q psy8199 762 --IG--LETCLTLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGIN-ICCGGIIGL- 834 (965)
Q Consensus 762 --~~--~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~~es-~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~-v~~~~i~Gl- 834 (965)
.+ +.+.++++.++++.++.|+++|++++++|+|| ++++++.+.+.+++++..++++.++++|+. ++.++|+|+
T Consensus 83 ~~~~~eitie~np~~lt~e~l~~l~~~Gv~risiGvqS~~~~~l~~lgR~~~~~~~~~ai~~l~~~G~~~v~~dli~GlP 162 (360)
T TIGR00539 83 LSDDCEITTEANPELITAEWCKGLKGAGINRLSLGVQSFRDDKLLFLGRQHSAKNIAPAIETALKSGIENISLDLMYGLP 162 (360)
T ss_pred CCCCCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCChHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEeccCCCC
Confidence 22 34566889999999999999999999999999 999999999999999999999999999995 899999999
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCCC--CCCCHHHHHHHHHHHHHHCCC
Q psy8199 835 SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGS--SILDPLEFIRTIAVARITMPT 895 (965)
Q Consensus 835 ~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~~--~~~~~~~~~~~ia~~R~~lp~ 895 (965)
++|.+++.++++.+.+++ ++.+.++.++|.|||++++. ..++.++..++...++..+..
T Consensus 163 gqt~~~~~~~l~~~~~l~--~~~is~y~l~~~~gT~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 223 (360)
T TIGR00539 163 LQTLNSLKEELKLAKELP--INHLSAYALSVEPNTNFEKNAKKLPDDDSCAHFDEVVREILEG 223 (360)
T ss_pred CCCHHHHHHHHHHHHccC--CCEEEeecceEcCCChhhhhhhcCcCHHHHHHHHHHHHHHHHH
Confidence 799999999999999999 99999999999999999863 235677777887777776643
|
Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo. |
| >TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.1e-16 Score=180.33 Aligned_cols=344 Identities=13% Similarity=0.044 Sum_probs=204.8
Q ss_pred CCcccccccccchhc-cCCCCCHHHHHHHHHHHhhc--cccccCCCCcHHHHHHHHHHHhhcC--CCCCeEEEcCChhHH
Q psy8199 252 SGKRYLDAISSWWVN-LFGHSNSYINKALKNQLNKL--EHVMLSNLTHKPVIKLSEKLSSLTQ--YKLGHCFYGSDGASA 326 (965)
Q Consensus 252 dG~~ylD~~~~~~~~-~lGh~~p~v~~av~~~~~~~--~~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~~~sGseA 326 (965)
.|..++|+..|.... +.=..++++.+++.+.+... ..+....+..+.+..+++.+....+ ...+++++++||++|
T Consensus 29 ~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~l~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~ii~t~G~t~a 108 (403)
T TIGR01265 29 PEKPIIPLSHGDPSVFGNLRTDPEAEEAVKDALRSGKFNGYAPSVGALAAREAVAEYLSSDLPGKLTADDVVLTSGCSQA 108 (403)
T ss_pred cCCCeEEeCCCCCCccCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCHHHEEEecChHHH
Confidence 477899998876531 11124688999998877542 1222222333344555555543222 235689999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCC-CCCCCCCChhHHHH
Q psy8199 327 VEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDS-RNINKGNSANEIAR 405 (965)
Q Consensus 327 ~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 405 (965)
+..+++.... ++++|++.+++|.++...+...+ ..+..++.+.. ...
T Consensus 109 l~~~~~~l~~--------~gd~Vlv~~p~y~~~~~~~~~~g-------------~~~~~~~~~~~~~~~----------- 156 (403)
T TIGR01265 109 IEICIEALAN--------PGANILVPRPGFPLYDTRAAFSG-------------LEVRLYDLLPEKDWE----------- 156 (403)
T ss_pred HHHHHHHhCC--------CCCEEEEeCCCchhHHHHHHHcC-------------CEEEEecCCcccCCc-----------
Confidence 9999987642 56789999998866532221111 12333332111 111
Q ss_pred HHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccccc-ccccccCCCc
Q psy8199 406 CAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKF-FACEHAEIWP 484 (965)
Q Consensus 406 ~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~-~~~~~~~~~p 484 (965)
.|++++++++.. ....++++.| +|++|.+. +.+.+++|.++|+++|+++|+||+|..|...+.. .....+.-.+
T Consensus 157 ~d~~~l~~~~~~--~~~~v~i~~p--~NPtG~~~-~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~ 231 (403)
T TIGR01265 157 IDLDGLEALADE--KTVAIVVINP--SNPCGSVF-SRDHLQKIAEVARKLGIPIIADEIYGHMVFGDAPFIPMASFASIV 231 (403)
T ss_pred cCHHHHHHHhCc--CccEEEEecC--CCCCCCCC-CHHHHHHHHHHHHHCCCEEEEEccccccccCCCCccchhhhccCC
Confidence 267888877742 2334455555 88999765 6677999999999999999999999988544432 2222221122
Q ss_pred cee---eeccccCCCcccceeeeec--HH-----HHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc---ccHH
Q psy8199 485 DFL---CLSKGITGGYLPLSLVMTT--DK-----IYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK---DNIL 551 (965)
Q Consensus 485 Div---t~sK~l~gG~~pig~v~~~--~~-----i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~---~~~~ 551 (965)
+++ +|||.++..++++|+++++ ++ +++.+.. ....+.+.+++++.++.++|+.-.+ ....
T Consensus 232 ~vi~~~S~SK~~~~pGlRiG~~v~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~ 304 (403)
T TIGR01265 232 PVLSLGGISKRWVVPGWRLGWIIIHDPHGIFRDTVLQGLKN-------LLQRILGPATIVQGALPDILENTPQEFFDGKI 304 (403)
T ss_pred cEEEEeecccccCCCcceEEEEEEeCchhhhHHHHHHHHHH-------HhhhhcCCChHHHHHHHHHHHhChHHHHHHHH
Confidence 344 6899854433899999874 23 3333322 1112455688888888888853111 1234
Q ss_pred HHHHHHHHHHHHHHHcccCCCceeeeec-eeEEEEEEEeecCccchhhHHHHHHHHH-HHcCcEEeecC-----CEEEEe
Q psy8199 552 QRISQDMKKITKALTSLITHPKIINFRQ-KGMIWAFDVIIEDPEQIETFSKKFFVAA-LKNELLLRPIG-----NTVYLM 624 (965)
Q Consensus 552 ~~~~~~~~~l~~~L~~l~~~~~i~~v~g-~G~~~~i~~~~~~~~~~~~~~~~~~~~l-~~~Gi~~~~~~-----~~lR~~ 624 (965)
++++++.+.+.+.|+. ++++..+.+ .|+++.+.+. ............+...+ .++||.+.|+. +++|++
T Consensus 305 ~~~~~~~~~l~~~L~~---~~~~~~~~p~~g~f~~~~~~-~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~iRis 380 (403)
T TIGR01265 305 SVLKSNAELCYEELKD---IPGLVCPKPEGAMYLMVKLE-LELFPEIKDDVDFCEKLVREESVICLPGSAFGLPNWVRIT 380 (403)
T ss_pred HHHHHHHHHHHHHHhc---CCCceecCCCceeEEEEecc-ccccCCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEE
Confidence 4455555556665544 345543334 4667777664 11000000133565664 57899998742 689999
Q ss_pred CCcccCHHHHHHHHHhhhccc
Q psy8199 625 PPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 625 p~~~~t~~~i~~~~~~l~~~~ 645 (965)
+...++.+++.++++.+.+
T Consensus 381 --~~~~~~~l~~~l~~l~~~~ 399 (403)
T TIGR01265 381 --ITVPESMLEEACSRIKEFC 399 (403)
T ss_pred --ecCCHHHHHHHHHHHHHHH
Confidence 5567888888888876543
|
This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley. |
| >TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.6e-16 Score=179.86 Aligned_cols=328 Identities=12% Similarity=0.089 Sum_probs=202.2
Q ss_pred cccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCC-----CcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHH
Q psy8199 254 KRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNL-----THKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVE 328 (965)
Q Consensus 254 ~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~-----~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~ 328 (965)
..|||..+. |-.++.+.+++.+.+..........+ ..+...++.+.++++++...+.+++++|+++++.
T Consensus 18 ~~yl~~~~~------~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ia~~~~~~~~~v~~~~~~t~~l~ 91 (397)
T TIGR01976 18 RVFFDNPAG------TQIPQSVADAVSAALTRSNANRGGAYESSRRADQVVDDAREAVADLLNADPPEVVFGANATSLTF 91 (397)
T ss_pred eEEecCCcc------CCCCHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHcCCCCCeEEEeCCHHHHHH
Confidence 478987654 33688999999988765311100111 2244678889999998766668999999999988
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHH
Q psy8199 329 VALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAI 408 (965)
Q Consensus 329 ~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 408 (965)
.++....... .++++|++.++.|++......... ......+..++.+...+. .|+
T Consensus 92 ~~~~~~~~~~-----~~gd~vl~~~~~~~s~~~~~~~~~---------~~~g~~~~~~~~~~~~~~-----------~~~ 146 (397)
T TIGR01976 92 LLSRAISRRW-----GPGDEVIVTRLDHEANISPWLQAA---------ERAGAKVKWARVDEATGE-----------LHP 146 (397)
T ss_pred HHHHHHHhcC-----CCCCEEEEcCCchHhHHHHHHHHH---------HhcCCEEEEEeccccCCC-----------cCH
Confidence 7776553211 245788888877655311100000 000112334443211111 367
Q ss_pred HHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcceee
Q psy8199 409 FDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLC 488 (965)
Q Consensus 409 ~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt 488 (965)
+++++.+. +++.+|+++. +++++|.+.+ +++|.++|++||+++|+||++. +|. + ........+|+++
T Consensus 147 ~~l~~~i~---~~~~lv~i~~-~~n~tG~~~~----~~~i~~~~~~~~~~~ivD~a~~-~~~-~---~~~~~~~~~d~~~ 213 (397)
T TIGR01976 147 DDLASLLS---PRTRLVAVTA-ASNTLGSIVD----LAAITELVHAAGALVVVDAVHY-APH-G---LIDVQATGADFLT 213 (397)
T ss_pred HHHHHhcC---CCceEEEEeC-CCCCCCccCC----HHHHHHHHHHcCCEEEEehhhh-ccc-c---CCCHHHcCCCEEE
Confidence 88888885 3456666666 6899999887 9999999999999999999985 331 1 1112223478775
Q ss_pred --eccccCCCcccceeeeecHHHHHhhhccCC-------cccccccCCCCCCHHHHHHHHHHHHHHhccc----------
Q psy8199 489 --LSKGITGGYLPLSLVMTTDKIYNSIYYKNN-------INIFLHSHSYSGNPLACCAALATLEIFNKDN---------- 549 (965)
Q Consensus 489 --~sK~l~gG~~pig~v~~~~~i~~~~~~~~~-------~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~---------- 549 (965)
++|.+ | .++|++++++++++.+..... ...+ ..+ +.+...+++..++++.+.+.+
T Consensus 214 ~s~~K~~--g-~~~G~l~~~~~~~~~l~~~~~~~~~~~~~~~~-~~g--t~~~~~~~~l~~al~~~~~~g~~~~~~~~~~ 287 (397)
T TIGR01976 214 CSAYKFF--G-PHMGILWGRPELLMNLPPYKLTFSYDTGPERF-ELG--TPQYELLAGVVAAVDYLAGLGESANGSRRER 287 (397)
T ss_pred Eechhhc--C-CceEEEEEcHHHHhhCCCccccCccCCCcchh-cCC--CCCHHHHHHHHHHHHHHHHhCcccccchhhh
Confidence 56876 3 478999999998876653100 0001 111 234455566666676654321
Q ss_pred -------HHHHHHHHHHHHHHHHHcccCCCceeeee-----ceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec
Q psy8199 550 -------ILQRISQDMKKITKALTSLITHPKIINFR-----QKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI 617 (965)
Q Consensus 550 -------~~~~~~~~~~~l~~~L~~l~~~~~i~~v~-----g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~ 617 (965)
..++..++.+++++.|+++ +++..+. ..+.++.+.+. + .....+.++|.++||+++.+
T Consensus 288 ~~~~~~~~~~~~~~l~~~l~~~L~~~---~~~~~~~~~~~~~~~~~~~~~~~--~-----~~~~~l~~~L~~~gI~v~~~ 357 (397)
T TIGR01976 288 LVASFQAIDAYENRLAEYLLVGLSDL---PGVTLYGVARLAARVPTVSFTVH--G-----LPPQRVVRRLADQGIDAWAG 357 (397)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcC---CCEEEeCCCCccCCCceEEEEeC--C-----cCHHHHHHHHHHCCeEEEeC
Confidence 2344455666666666554 3333222 24556665543 1 11345778899999999753
Q ss_pred ----------------CCEEEEeCCcccCHHHHHHHHHhh
Q psy8199 618 ----------------GNTVYLMPPYILNKNEIQHMTSAI 641 (965)
Q Consensus 618 ----------------~~~lR~~p~~~~t~~~i~~~~~~l 641 (965)
++.+|++++...++++++++++.+
T Consensus 358 ~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l 397 (397)
T TIGR01976 358 HFYAVRLLRRLGLNDEGGVVRVGLAHYNTAEEVDRLLEAL 397 (397)
T ss_pred ccchHHHHHHhCCCCCCCeEEEEeeccCCHHHHHHHHHhC
Confidence 258999999999999999998764
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase. |
| >PRK09057 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.9e-17 Score=183.64 Aligned_cols=202 Identities=9% Similarity=0.114 Sum_probs=163.4
Q ss_pred cCCCCCCCCCCCCCCcCCCCcccccCCCHHHHHHHHHHHHH----CCCCEEEEeeccCCCCcccHHHHHHHHHHHHhc--
Q psy8199 689 TGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKS----DGATRFCMGAAWRELKDRDLDNIENMICEVKKI-- 762 (965)
Q Consensus 689 s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~----~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~-- 762 (965)
-..|...|.||.|.+...... .. ..-.+.+.++++...+ ..++.++|.||. +...+.+.+.++++.+++.
T Consensus 11 IPFC~~kC~yC~f~~~~~~~~-~~-~~Y~~aL~~Ei~~~~~~~~~~~i~tiy~GGGT--Ps~l~~~~L~~ll~~i~~~f~ 86 (380)
T PRK09057 11 WPFCLAKCPYCDFNSHVRHAI-DQ-ARFAAAFLRELATEAARTGPRTLTSIFFGGGT--PSLMQPETVAALLDAIARLWP 86 (380)
T ss_pred eCCcCCcCCCCCCcccCcCcC-CH-HHHHHHHHHHHHHHHHHcCCCCcCeEEeCCCc--cccCCHHHHHHHHHHHHHhCC
Confidence 367999999999876422111 00 0124666677664433 357889987774 3355677777888777751
Q ss_pred -----CcEeEEecCCCCHHHHHHHHHhCCCeEeccCCC-CHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEec-C
Q psy8199 763 -----GLETCLTLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL-S 835 (965)
Q Consensus 763 -----~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~~es-~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl-~ 835 (965)
.+.+.+++..++.+.++.|+++|++++++|+|| ++++++.+.+.++.++..++++.+++++..++..+|+|+ |
T Consensus 87 ~~~~~eit~E~~P~~i~~e~L~~l~~~GvnrislGvQS~~d~vL~~l~R~~~~~~~~~ai~~~~~~~~~v~~dli~GlPg 166 (380)
T PRK09057 87 VADDIEITLEANPTSVEAGRFRGYRAAGVNRVSLGVQALNDADLRFLGRLHSVAEALAAIDLAREIFPRVSFDLIYARPG 166 (380)
T ss_pred CCCCccEEEEECcCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHhCccEEEEeecCCCC
Confidence 345667899999999999999999999999999 999999999999999999999999999889999999999 7
Q ss_pred CCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCC------CCCCCHHHHHHHHHHHHHHCCCC
Q psy8199 836 ESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYG------SSILDPLEFIRTIAVARITMPTS 896 (965)
Q Consensus 836 et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~------~~~~~~~~~~~~ia~~R~~lp~~ 896 (965)
+|.+++.++++.+.+++ ++.|.++.++|.|||++++ ...++.++..++...++.+|...
T Consensus 167 qt~~~~~~~l~~~~~l~--p~~is~y~L~~~~gT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~L~~~ 231 (380)
T PRK09057 167 QTLAAWRAELKEALSLA--ADHLSLYQLTIEEGTAFYGLHAAGKLILPDEDLAADLYELTQEITAAA 231 (380)
T ss_pred CCHHHHHHHHHHHHhcC--CCeEEeecceecCCChHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHc
Confidence 99999999999999999 9999999999999999875 23467788888888888887543
|
|
| >PLN02368 alanine transaminase | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.8e-17 Score=183.36 Aligned_cols=256 Identities=14% Similarity=0.114 Sum_probs=171.4
Q ss_pred ccccCCCCcHHHHHHHHHHHhhcC--CCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCcccccc
Q psy8199 288 HVMLSNLTHKPVIKLSEKLSSLTQ--YKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALA 365 (965)
Q Consensus 288 ~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~ 365 (965)
+|....+..+.++.+++.+.+..+ .+.++|++|+|+++|+..++.+... .+++.|++.+++|.++......
T Consensus 102 ~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~~-------~pGd~Vli~~P~Y~~y~~~~~~ 174 (407)
T PLN02368 102 AYSDSRGLPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQILNAVIR-------GEKDGVLVPVPQYPLYSATISL 174 (407)
T ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEcccHHHHHHHHHHHHcC-------CCCCEEEEeCCCCccHHHHHHH
Confidence 344444556778888888876644 3567999999999999999887642 2578899999999988544333
Q ss_pred ccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhC---CCcEE-EEEEccccccCCCcccCC
Q psy8199 366 VTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKN---HNKIA-AIIIEPLVQCAGGMIMYD 441 (965)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~---~~~~a-aii~ep~v~~~~G~~~~~ 441 (965)
.++ .++.+|........ .|+++|++.+.+. ..++. .++++| +|++|.+. +
T Consensus 175 ~g~-------------~~v~v~~~~~~~~~----------~d~~~le~~i~~~~~~~~~~k~l~l~nP--~NPTG~v~-s 228 (407)
T PLN02368 175 LGG-------------TLVPYYLEESENWG----------LDVNNLRQSVAQARSKGITVRAMVIINP--GNPTGQCL-S 228 (407)
T ss_pred cCC-------------EEEEEecccccCCC----------CCHHHHHHHHHHHhhcCCCeEEEEEECC--CCCCCccC-C
Confidence 332 22333332111000 2678888888632 11345 566666 99999876 7
Q ss_pred hHHHHHHHHHHHhcCCeEEEeccccCCCcccc--cccc-ccc-CC------Cccee---eeccccC--CCcccceeee--
Q psy8199 442 SIYLKLVREICNNYNIHLIADEIAVGCGRTGK--FFAC-EHA-EI------WPDFL---CLSKGIT--GGYLPLSLVM-- 504 (965)
Q Consensus 442 ~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~--~~~~-~~~-~~------~pDiv---t~sK~l~--gG~~pig~v~-- 504 (965)
.+.+++|.++|++||+++|.||+|..+...+. +.+. +.. ++ .+.++ +|||++. .| |++|+++
T Consensus 229 ~e~l~~l~~~a~~~~~~II~DE~Y~~l~y~~~~~~~s~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~~G-lRiGy~i~~ 307 (407)
T PLN02368 229 EANLREILKFCYQERLVLLGDEVYQQNIYQDERPFISAKKVLMDMGPPISKEVQLVSFHTVSKGYWGECG-QRGGYFEMT 307 (407)
T ss_pred HHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcccHHHHHhhhcccccccceEEEEecCCcccccCCc-cceEEEEEe
Confidence 88899999999999999999999998754442 2121 111 11 12444 5799873 35 8999998
Q ss_pred -ecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHH-----------hc-ccHHHHHHHHHHHHHHHHHcccCC
Q psy8199 505 -TTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIF-----------NK-DNILQRISQDMKKITKALTSLITH 571 (965)
Q Consensus 505 -~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~-----------~~-~~~~~~~~~~~~~l~~~L~~l~~~ 571 (965)
+++++++.+.. . ...+++.+.+++.++.++|+-- ++ ..+.+..+++.+.+.+.|+++
T Consensus 308 ~~~~~li~~~~~------~-~~~~~~~~~~~Q~aa~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~L~~~--- 377 (407)
T PLN02368 308 NIPPKTVEEIYK------V-ASIALSPNVSGQIFMGLMVNPPKPGDISYDQFVRESKGILESLRRRARMMTDGFNSC--- 377 (407)
T ss_pred CCCHHHHHHHHH------H-hcccCCCCcHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---
Confidence 48888888765 1 2235667889999999988521 10 123455566666666666554
Q ss_pred CceeeeeceeEEEEEE
Q psy8199 572 PKIINFRQKGMIWAFD 587 (965)
Q Consensus 572 ~~i~~v~g~G~~~~i~ 587 (965)
+++....++|.|+.+.
T Consensus 378 ~g~~~~~P~Gafy~~~ 393 (407)
T PLN02368 378 KNVVCNFTEGAMYSFP 393 (407)
T ss_pred CCeEeCCCCeeeEecc
Confidence 6777888999998874
|
|
| >cd06453 SufS_like Cysteine desulfurase (SufS)-like | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.9e-16 Score=177.96 Aligned_cols=328 Identities=12% Similarity=0.112 Sum_probs=205.7
Q ss_pred cccccccchhccCCCCCHHHHHHHHHHHhhccccccCCC-------CcHHHHHHHHHHHhhcCCC-CCeEEEcCChhHHH
Q psy8199 256 YLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNL-------THKPVIKLSEKLSSLTQYK-LGHCFYGSDGASAV 327 (965)
Q Consensus 256 ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~-------~~~~~~~la~~l~~~~~~~-~~~v~~~~sGseA~ 327 (965)
|||..+ .|-.+|.+.+++.+.+...... ...+ ......++.+.+++.++.. .+++++++|+++|+
T Consensus 2 yl~~~~------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~g~t~a~ 74 (373)
T cd06453 2 YLDNAA------TSQKPQPVIDAIVDYYRHYNAN-VHRGVHELSARATDAYEAAREKVARFINAPSPDEIIFTRNTTEAI 74 (373)
T ss_pred cccCcc------ccCCCHHHHHHHHHHHHhcCCC-CCCCccHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCCHHHHH
Confidence 677654 3446889999998877543111 1111 1233456778888888755 56899999999999
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHH
Q psy8199 328 EVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCA 407 (965)
Q Consensus 328 ~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 407 (965)
..+++.+... ..++++|++.++.|.+......... ......+..++.... +. .|
T Consensus 75 ~~~~~~l~~~-----~~~g~~vl~~~~~~~~~~~~~~~~~---------~~~g~~~~~v~~~~~-~~-----------~d 128 (373)
T cd06453 75 NLVAYGLGRA-----NKPGDEIVTSVMEHHSNIVPWQQLA---------ERTGAKLKVVPVDDD-GQ-----------LD 128 (373)
T ss_pred HHHHHHhhhc-----CCCCCEEEECcchhHHHHHHHHHHH---------hhcCcEEEEeecCCC-CC-----------cC
Confidence 9999876430 0145778888776654211000000 001113344443211 11 36
Q ss_pred HHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCccee
Q psy8199 408 IFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL 487 (965)
Q Consensus 408 ~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDiv 487 (965)
++++++.+.+ ++.+|++.. +++++|.+.+ +++|.++|++||+++|+|++++ +|.. ........+|++
T Consensus 129 ~~~l~~~l~~---~~~~v~~~~-~~~~tG~~~~----~~~i~~~~~~~~~~li~D~a~~-~~~~----~~~~~~~~~d~~ 195 (373)
T cd06453 129 LEALEKLLTE---RTKLVAVTH-VSNVLGTINP----VKEIGEIAHEAGVPVLVDGAQS-AGHM----PVDVQDLGCDFL 195 (373)
T ss_pred HHHHHHHhcC---CceEEEEeC-cccccCCcCC----HHHHHHHHHHcCCEEEEEhhhh-cCce----eeeccccCCCEE
Confidence 7888888853 566677666 6888998887 8899999999999999999986 4332 112223457999
Q ss_pred eec--cccCCCcccceeeeecHHHHHhhhccCCc----cc-------c---c-ccCCCCCCHHHHHHHHHHHHHHhccc-
Q psy8199 488 CLS--KGITGGYLPLSLVMTTDKIYNSIYYKNNI----NI-------F---L-HSHSYSGNPLACCAALATLEIFNKDN- 549 (965)
Q Consensus 488 t~s--K~l~gG~~pig~v~~~~~i~~~~~~~~~~----~~-------~---~-~~~t~~~~~~~~aaa~a~L~~~~~~~- 549 (965)
++| |.+++ ..+|++++++++++.+..-... .. + . .....+.+..++.+..++++.+.+.+
T Consensus 196 ~~s~~K~~~~--~g~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~l~~~g~ 273 (373)
T cd06453 196 AFSGHKMLGP--TGIGVLYGKEELLEEMPPYGGGGEMIEEVSFEETTYADLPHKFEAGTPNIAGAIGLGAAIDYLEKIGM 273 (373)
T ss_pred EeccccccCC--CCcEEEEEchHHhhcCCCeecCCCccccccccccccCCCccccCCCCCCHHHHHHHHHHHHHHHHcCH
Confidence 888 98876 4689999999888766531000 00 0 0 00011234445556666777766543
Q ss_pred --HHHHHHHHHHHHHHHHHcccCCCceeee---eceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec-------
Q psy8199 550 --ILQRISQDMKKITKALTSLITHPKIINF---RQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI------- 617 (965)
Q Consensus 550 --~~~~~~~~~~~l~~~L~~l~~~~~i~~v---~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~------- 617 (965)
+.++.+++.+++.+.|+++ +++..+ ...+.++.+.+. + ....++.+.|.++||.+.++
T Consensus 274 ~~~~~~~~~~~~~l~~~l~~~---~~~~~~~~~~~~~~~~~~~~~--~-----~~~~~i~~~l~~~gi~i~~g~~~~~~~ 343 (373)
T cd06453 274 EAIAAHEHELTAYALERLSEI---PGVRVYGDAEDRAGVVSFNLE--G-----IHPHDVATILDQYGIAVRAGHHCAQPL 343 (373)
T ss_pred HHHHHHHHHHHHHHHHHHhcC---CCeEEeCCccccCCeEEEEEC--C-----cCHHHHHHHHHHCCEEeccCccchhHH
Confidence 4555566666666666554 444322 234667777653 1 11346778889999988632
Q ss_pred ------CCEEEEeCCcccCHHHHHHHHHhh
Q psy8199 618 ------GNTVYLMPPYILNKNEIQHMTSAI 641 (965)
Q Consensus 618 ------~~~lR~~p~~~~t~~~i~~~~~~l 641 (965)
.+.+|++++..+++++++++++.+
T Consensus 344 ~~~~~~~~~iRis~~~~~t~~di~~~~~~l 373 (373)
T cd06453 344 MRRLGVPGTVRASFGLYNTEEEIDALVEAL 373 (373)
T ss_pred HHHhCCCCeEEEEecCCCCHHHHHHHHhhC
Confidence 358999999999999999998764
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine. |
| >TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.75 E-value=9.2e-17 Score=180.84 Aligned_cols=297 Identities=9% Similarity=0.048 Sum_probs=183.1
Q ss_pred cHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccch
Q psy8199 296 HKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEI 375 (965)
Q Consensus 296 ~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~ 375 (965)
++...++.+.++++++ .+.+.+++||++|+..++..... ++++|++....|+.. +.+....+
T Consensus 50 ~~~~~~~~e~lA~~~g--~~~~~i~~g~~~a~~~~~~~l~~--------~gd~Vl~~~~~h~s~-~~~~~~~g------- 111 (370)
T TIGR02539 50 KPPIHDFLEDLAEFLG--MDEARVTHGAREGKFAVMHALCK--------EGDWVVLDGLAHYTS-YVAAERAG------- 111 (370)
T ss_pred chHHHHHHHHHHHHhC--CCceEEECChHHHHHHHHHHhhC--------CCCEEEECCcccHHH-HHHHHHcC-------
Confidence 3466778888999984 56788899999999999886642 456777755554332 22222221
Q ss_pred hcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhC----CCcEEEEEEccccccCCCcccCChHHHHHHHHH
Q psy8199 376 YTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKN----HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREI 451 (965)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~----~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l 451 (965)
..+..+|........ .|+++|++.+.+. ..++.+|+++. +++++|.+.+ +++|.++
T Consensus 112 -----~~~~~~~~~~~~~~~----------~d~~~l~~~l~~~~~~~~~~~~lv~~~~-p~~~~G~~~~----l~~i~~l 171 (370)
T TIGR02539 112 -----LNVKEVPHTGHPEYK----------VDPEGYGEVIEEVEDESGKPPVLALLTH-VDGEYGNLPD----AGKVAKV 171 (370)
T ss_pred -----CEEEEEecCCcccCC----------cCHHHHHHHHHHhhhccCCCcEEEEEEC-CCCCCccccC----HHHHHHH
Confidence 122333322100000 3788888888642 12455666665 6889998887 8899999
Q ss_pred HHhcCCeEEEeccccCCCcccccccccccCCCccee--eeccccCCCcccceeeeecHHHHHhhhccCCcccccc-----
Q psy8199 452 CNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL--CLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLH----- 524 (965)
Q Consensus 452 ~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDiv--t~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~----- 524 (965)
|++||+++|+||+|. +|..+.. ..+..+|++ +++|++++| .|+|++++++++++.+... ..++..
T Consensus 172 a~~~~~~livDea~~-~g~~~~~----~~~~~~di~v~s~sK~~~~~-g~~G~l~~~~~~i~~l~~~--~~~~~~~~~~~ 243 (370)
T TIGR02539 172 CREKGVPLLLNCAYT-VGRMPVS----AKEIGADFIVGSGHKSMAAS-GPCGVLGMSEEWEDIVLRK--SRYSPVKEVEL 243 (370)
T ss_pred HHHcCCeEEEECccc-cCCcCCC----HHHcCCCEEEeeCcccccCC-CCEEEEEECHHHHhhhccc--ccCCccceeee
Confidence 999999999999997 4432211 112246765 689999876 4899999999999887652 111111
Q ss_pred -cCCCCCCHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHcccCCCcee---eeeceeEEEEEEEeecCc--cchh
Q psy8199 525 -SHSYSGNPLACCAALATLEIFNK-DNILQRISQDMKKITKALTSLITHPKII---NFRQKGMIWAFDVIIEDP--EQIE 597 (965)
Q Consensus 525 -~~t~~~~~~~~aaa~a~L~~~~~-~~~~~~~~~~~~~l~~~L~~l~~~~~i~---~v~g~G~~~~i~~~~~~~--~~~~ 597 (965)
+++. ...+++++.++|+...+ -....+..++.++++++|+++ ++. ...+.+.++.+.+..... ....
T Consensus 244 ~~~~~--~~~~~~~~~~al~~~~~~l~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~s~t~~v~~~~~~~~~~~~~~~ 317 (370)
T TIGR02539 244 LGCTS--RGAPIVTMMASFPHVVERVKRWDEEVKKTRWFVAELEDI----GFIQLGQKPKEHDLVKFETPGFHEIAQKHK 317 (370)
T ss_pred ecccc--cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CcEEEccCCCcCceEEEECCchhHHhhhhc
Confidence 1111 12355666667764321 111223334456888888776 222 124456666665420000 0001
Q ss_pred hHHHHHHHHHHHcCcE-EeecC-CEEEEeCCcccCHHHHHHHHHhhhccc
Q psy8199 598 TFSKKFFVAALKNELL-LRPIG-NTVYLMPPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 598 ~~~~~~~~~l~~~Gi~-~~~~~-~~lR~~p~~~~t~~~i~~~~~~l~~~~ 645 (965)
.....+.+.|.++||+ +++.. +++|++. ..+++++++++++.+.+.+
T Consensus 318 ~~~~~~~~~L~e~GI~~ir~~~~~~iRis~-~~~t~e~i~~l~~~L~~~~ 366 (370)
T TIGR02539 318 RRGYFLYEELKKRGIHGIRSGQTKYFKLSV-YGLTKEQVEYVVDSFEEIV 366 (370)
T ss_pred cccHHHHHHHHhCCCccccCCcceEEEEEe-cCCCHHHHHHHHHHHHHHH
Confidence 1134578899999997 66643 5899996 3689999999999887543
|
Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA. |
| >TIGR01210 conserved hypothetical protein TIGR01210 | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.6e-17 Score=174.68 Aligned_cols=206 Identities=13% Similarity=0.114 Sum_probs=154.5
Q ss_pred CCeEEEeEeEeeccCCCCC----CCCCCCCCCcCCCCcccccCCCHHHHHHHHHHHHHC-CCC----EE-EEeeccC-CC
Q psy8199 676 ANEIELAVLLSIKTGGCTE----DCGYCPQSTHYNTEITATKILSIESVITAAQKAKSD-GAT----RF-CMGAAWR-EL 744 (965)
Q Consensus 676 g~~~~~~~~i~~~s~~C~~----~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~-g~~----~i-~l~~g~~-~~ 744 (965)
|......++|.. |+||++ +|.||++... . ++..++++|.+++++..+. +.+ .+ .+++|.+ +.
T Consensus 10 ~~~~~~~~~i~~-srGC~~~~~g~C~FC~~~~~---~---~r~~s~e~i~~~i~~~~~~~~~~~~~~~ikif~sgsf~D~ 82 (313)
T TIGR01210 10 GFPGKSLTIILR-TRGCYWAREGGCYMCGYLAD---S---SPEVTEENLINQFDEAIEKYKEKIKDFVIKIFTSGSFLDD 82 (313)
T ss_pred CcccceEEEEEe-CCCCCCCCCCcCccCCCCCC---C---CCCCChhHHHHHHHHHHHHhhcccccEEEEEecCCCcCCc
Confidence 333334445555 999999 5999975532 1 2236899999999887754 322 11 2344432 22
Q ss_pred CcccHHHHHHHHHHHHhcC----cEeEEecCCCCHHHHHHHHHhCCC-eEeccCCC-CHHHHh-cccCCCCHHHHHHHHH
Q psy8199 745 KDRDLDNIENMICEVKKIG----LETCLTLGMLNENQAYRLKKVGLD-YYNHNLDT-SPKLYG-DIISTRDYENRLNTLK 817 (965)
Q Consensus 745 ~~~~~~~~~~~~~~i~~~~----~~i~~~~~~~~~e~l~~Lk~aG~~-~i~i~~es-~~~~~~-~i~~~~~~~~~~~~i~ 817 (965)
...+.+.+.++++.+++.+ +.+.+++..++++.++.|+++|++ ++.+|+|| ++++++ .++++++.++..++++
T Consensus 83 ~~~~~~~~~~i~~~l~~~~~~~~i~~esrpd~i~~e~L~~l~~aG~~~~v~iG~ES~~d~~L~~~inKg~t~~~~~~ai~ 162 (313)
T TIGR01210 83 REVPKETRNYIFEKIAQRDNLKEVVVESRPEFIDEEKLEELRKIGVNVEVAVGLETANDRIREKSINKGSTFEDFIRAAE 162 (313)
T ss_pred CcCCHHHHHHHHHHHHhcCCcceEEEEeCCCcCCHHHHHHHHHcCCCEEEEEecCcCCHHHHHHhhCCCCCHHHHHHHHH
Confidence 3345677777777776643 456678899999999999999998 89999999 999995 8999999999999999
Q ss_pred HHHHcCCceeeeEEEecC-----CCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCC------CCCCCHHHHHHHH
Q psy8199 818 NVRNVGINICCGGIIGLS-----ESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYG------SSILDPLEFIRTI 886 (965)
Q Consensus 818 ~~~~~Gi~v~~~~i~Gl~-----et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~------~~~~~~~~~~~~i 886 (965)
.++++|+.+..++|+|++ |+.+++.++++.+..++ +.+++++++|.|||+++. ..++.....++++
T Consensus 163 ~~~~~Gi~v~~~~i~G~P~~se~ea~ed~~~ti~~~~~l~---~~vs~~~l~v~~gT~l~~~~~~G~~~pp~lws~~e~l 239 (313)
T TIGR01210 163 LARKYGAGVKAYLLFKPPFLSEKEAIADMISSIRKCIPVT---DTVSINPTNVQKGTLVEFLWNRGLYRPPWLWSVAEVL 239 (313)
T ss_pred HHHHcCCcEEEEEEecCCCCChhhhHHHHHHHHHHHHhcC---CcEEEECCEEeCCCHHHHHHHcCCCCCCCHHHHHHHH
Confidence 999999999999999984 56677888888888885 899999999999998863 3455445555555
Q ss_pred HHHHH
Q psy8199 887 AVARI 891 (965)
Q Consensus 887 a~~R~ 891 (965)
.-.+.
T Consensus 240 ~e~~~ 244 (313)
T TIGR01210 240 KEAKK 244 (313)
T ss_pred HHHHh
Confidence 55543
|
This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes. |
| >PRK08446 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.9e-17 Score=182.89 Aligned_cols=180 Identities=12% Similarity=0.154 Sum_probs=144.9
Q ss_pred cCCCCCCCCCCCCCCcCCCCcccccCCCHHHHHHHHHHHHH----CCCCEEEEeeccCCCCcccHHHHHHHHHHHHh---
Q psy8199 689 TGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKS----DGATRFCMGAAWRELKDRDLDNIENMICEVKK--- 761 (965)
Q Consensus 689 s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~----~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~--- 761 (965)
-..|+.+|.||.+....... .......+.++++++...+ .+++.|+|.||.. ...+.+.+.+++..+++
T Consensus 7 iPFC~~~C~yC~f~~~~~~~--~~~~~y~~~L~~Ei~~~~~~~~~~~v~~iyfGGGTP--s~l~~~~l~~ll~~i~~~~~ 82 (350)
T PRK08446 7 IPFCESKCGYCAFNSYENKH--DLKKEYMQALCLDLKFELEQFTDEKIESVFIGGGTP--STVSAKFYEPIFEIISPYLS 82 (350)
T ss_pred eCCccCcCCCCCCcCcCCCc--ccHHHHHHHHHHHHHHHHhhccCCceeEEEECCCcc--ccCCHHHHHHHHHHHHHhcC
Confidence 36799999999987642111 1111245777777765432 2678888877743 23445666666665554
Q ss_pred c--CcEeEEecCCCCHHHHHHHHHhCCCeEeccCCC-CHHHHhcccCCCCHHHHHHHHHHHHHcCCc-eeeeEEEec-CC
Q psy8199 762 I--GLETCLTLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGIN-ICCGGIIGL-SE 836 (965)
Q Consensus 762 ~--~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~~es-~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~-v~~~~i~Gl-~e 836 (965)
. .+.+.+++..++++.++.|+++|++++++|+|| +++.++.+.+.++.++..++++.++++|+. ++..+|+|+ ++
T Consensus 83 ~~~eitiE~nP~~~~~e~l~~l~~~GvnRiSiGvQS~~~~~L~~lgR~~~~~~~~~ai~~lr~~g~~~v~iDli~GlPgq 162 (350)
T PRK08446 83 KDCEITTEANPNSATKAWLKGMKNLGVNRISFGVQSFNEDKLKFLGRIHSQKQIIKAIENAKKAGFENISIDLIYDTPLD 162 (350)
T ss_pred CCceEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCCCC
Confidence 2 344566889999999999999999999999999 999999999999999999999999999995 889999999 69
Q ss_pred CHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCCC
Q psy8199 837 SRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGS 874 (965)
Q Consensus 837 t~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~~ 874 (965)
|.+++.++++.+.+++ ++.+.++.+.|.||||+...
T Consensus 163 t~~~~~~~l~~~~~l~--~~~is~y~L~~~~gT~l~~~ 198 (350)
T PRK08446 163 NKKLLKEELKLAKELP--INHLSAYSLTIEENTPFFEK 198 (350)
T ss_pred CHHHHHHHHHHHHhcC--CCEEEeccceecCCChhHHh
Confidence 9999999999999999 99999999999999999763
|
|
| >PLN02450 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.3e-16 Score=183.92 Aligned_cols=308 Identities=16% Similarity=0.106 Sum_probs=187.0
Q ss_pred cccCCCCcHHHHHHHHHHHhhcC----CCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccc
Q psy8199 289 VMLSNLTHKPVIKLSEKLSSLTQ----YKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGAL 364 (965)
Q Consensus 289 ~~~~~~~~~~~~~la~~l~~~~~----~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~ 364 (965)
|....+..+.+..+++.+.+..+ .+.++|++|+|+++++..++.+... +++.|++.+++|.++.....
T Consensus 82 Y~~~~G~~~LR~aiA~~l~~~~~~~~~v~~~~Iiit~Ga~~al~~l~~~l~~--------pGd~Vlv~~P~Y~~~~~~~~ 153 (468)
T PLN02450 82 FQDYHGLPAFKNALAEFMSEIRGNKVTFDPNKLVLTAGATSANETLMFCLAE--------PGDAFLLPTPYYPGFDRDLK 153 (468)
T ss_pred CCCCCChHHHHHHHHHHHHHhhCCCCCcChHHeEEccChHHHHHHHHHHhCC--------CCCEEEECCCCCCchHHHHh
Confidence 33334555677777777776533 3567999999999999998886643 57889999999988743222
Q ss_pred cccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhC---CCcEE-EEEEccccccCCCcccC
Q psy8199 365 AVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKN---HNKIA-AIIIEPLVQCAGGMIMY 440 (965)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~---~~~~a-aii~ep~v~~~~G~~~~ 440 (965)
...| ..++.+|.....+.. .|++++++++.+. +.++. .++++| +|++|.+.
T Consensus 154 ~~~g------------~~~v~v~~~~~~~~~----------~~~~~le~~~~~~~~~~~~~k~v~l~nP--~NPTG~~~- 208 (468)
T PLN02450 154 WRTG------------VEIVPIHCSSSNGFQ----------ITESALEEAYQQAQKLNLKVKGVLITNP--SNPLGTTT- 208 (468)
T ss_pred hcCC------------cEEEEEecCCccCCc----------CCHHHHHHHHHHHHhcCCCeeEEEEecC--CCCCCccc-
Confidence 1111 122333321111100 2457777766542 23454 455555 89999876
Q ss_pred ChHHHHHHHHHHHhcCCeEEEeccccCCCcccccc-c-cccc------C--CCccee---eeccccC-CCcccceeeeec
Q psy8199 441 DSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFF-A-CEHA------E--IWPDFL---CLSKGIT-GGYLPLSLVMTT 506 (965)
Q Consensus 441 ~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~-~-~~~~------~--~~pDiv---t~sK~l~-gG~~pig~v~~~ 506 (965)
+.+.+++|.++|++||+++|+||+|..+-..+..+ . .... + ....++ +|||.++ .| +++|+++++
T Consensus 209 s~e~l~~ll~~a~~~~~~iI~DE~Y~~~~f~~~~~~s~l~~~~~~~~~~~~~~~~vi~l~S~SK~~~l~G-lRiG~li~~ 287 (468)
T PLN02450 209 TRTELNLLVDFITAKNIHLISDEIYSGTVFDSPGFVSVMEVLKDRKLENTDVSNRVHIVYSLSKDLGLPG-FRVGAIYSN 287 (468)
T ss_pred CHHHHHHHHHHHHHCCcEEEEEccccccccCCCCcccHHHHhhhcccccCCCCCcEEEEEeccccCCCCC-ccEEEEEEC
Confidence 78889999999999999999999998764444222 1 1111 1 122333 6899886 55 899999997
Q ss_pred HH-HHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh--c---ccHHHHHHHHHHHHHHHHHcccCCCceeeeece
Q psy8199 507 DK-IYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN--K---DNILQRISQDMKKITKALTSLITHPKIINFRQK 580 (965)
Q Consensus 507 ~~-i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~--~---~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~ 580 (965)
++ +.+.+.. .. .....+.+++.++.++|+--. + ....++++++.+.+.+.|++. ++..+.+.
T Consensus 288 ~~~l~~~~~~------~~--~~~~~s~~~Q~a~~~~L~~~~~~~~~l~~~~~~l~~rr~~l~~~L~~~----gi~~~~~~ 355 (468)
T PLN02450 288 DEMVVSAATK------MS--SFGLVSSQTQYLLSALLSDKKFTKNYLEENQKRLKQRQKKLVSGLEAA----GIKCLKSN 355 (468)
T ss_pred CHHHHHHHHH------Hh--hcCCCCHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHc----CCcccCCC
Confidence 54 5555543 11 112347788888888774210 0 112344445555555555543 44445555
Q ss_pred eE-EEEEEEeecCccc-hhhHHHHHHHHHH-HcCcEEeecC-------CEEEEeCCcc-cCHHHHHHHHHhhhccc
Q psy8199 581 GM-IWAFDVIIEDPEQ-IETFSKKFFVAAL-KNELLLRPIG-------NTVYLMPPYI-LNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 581 G~-~~~i~~~~~~~~~-~~~~~~~~~~~l~-~~Gi~~~~~~-------~~lR~~p~~~-~t~~~i~~~~~~l~~~~ 645 (965)
|. |+++.+. ..... ......++...+. ++||.+.|+. +++|++ +. .+++++++.++++.+.+
T Consensus 356 ~g~flwi~l~-~~~~~~~~~~~~~l~~~ll~~~gV~v~PG~~f~~~~~g~~Rl~--f~~~~~~~l~~~l~ri~~~l 428 (468)
T PLN02450 356 AGLFCWVDMR-HLLKSNTFEAEMELWKKIVYEVKLNISPGSSCHCTEPGWFRVC--FANMSEETLDLAMKRLKSFV 428 (468)
T ss_pred ceEEEEEEch-HhcCcCCchHHHHHHHHHHHhCCEEEeCccccCCCCCCEEEEE--ecCCCHHHHHHHHHHHHHHH
Confidence 55 6666653 11000 0011224555655 5899998852 689999 56 47888999888876543
|
|
| >PRK10534 L-threonine aldolase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.1e-16 Score=178.04 Aligned_cols=321 Identities=15% Similarity=0.112 Sum_probs=198.3
Q ss_pred cccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHH
Q psy8199 256 YLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSF 335 (965)
Q Consensus 256 ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~ 335 (965)
+||+.|+.+ =| .+|.+.+|+.+...... ..++.+...+|.+.+++.++ .+.+++++||++|+..++.+..
T Consensus 1 ~~~~~~~~~---~~-p~~~~~~a~~~~~~~~~----~Y~~~~~~~~L~~~la~~~g--~~~~~v~~~g~~a~~~~l~~~~ 70 (333)
T PRK10534 1 MIDLRSDTV---TR-PSRAMLEAMMAAPVGDD----VYGDDPTVNALQDYAAELSG--KEAALFLPTGTQANLVALLSHC 70 (333)
T ss_pred CcccccccC---CC-CCHHHHHHHHhccCCCc----ccCCCHHHHHHHHHHHHHhC--CCeEEEeCchHHHHHHHHHHhc
Confidence 478888743 33 78999999876544431 12267888999999999984 5677899999999988887553
Q ss_pred HHHHhcCCCCceEEEEEcCCccC-CccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHH
Q psy8199 336 HYWYNKGFLNKKKFICLQNSYHG-ETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEIL 414 (965)
Q Consensus 336 ~~~~~~g~~~~~~vi~~~~~yHg-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~ 414 (965)
. ++++|++..++|.. +........+ ......++.... +. .|+++|+++
T Consensus 71 ~--------~gd~vi~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~-~~-----------~d~~~l~~~ 119 (333)
T PRK10534 71 E--------RGEEYIVGQAAHNYLYEAGGAAVLG-----------SIQPQPIDAAAD-GT-----------LPLDKVAAK 119 (333)
T ss_pred C--------CCCeeEEechhhhhHhcCCchHHhc-----------CceEEeecCCCC-CC-----------CCHHHHHHh
Confidence 2 45677776655531 1100000000 001122222111 11 367888888
Q ss_pred HHhCC---CcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccc-cccccccCCCcc--eee
Q psy8199 415 LKKNH---NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK-FFACEHAEIWPD--FLC 488 (965)
Q Consensus 415 l~~~~---~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~-~~~~~~~~~~pD--ivt 488 (965)
+.++. .++.+|+++. ++ +|.+. +.+.+++|.++|++||+++|+||+|. |+..+. ........-.+| +++
T Consensus 120 i~~~~~~~~~~~lv~l~n-p~--~G~v~-~~~~l~~i~~~~~~~~~~lvvDEA~~-~~~~~~~~~~~~~~~~~~~~~~~s 194 (333)
T PRK10534 120 IKPDDIHFARTRLLSLEN-TH--NGKVL-PREYLKQAWEFTRERNLALHVDGARI-FNAVVAYGCELKEITQYCDSFTIC 194 (333)
T ss_pred hcccCcCcccceEEEEec-CC--CCeec-CHHHHHHHHHHHHHcCCeEEeeHHHH-HHHHHHcCCCHHHHHhcCCEEEEE
Confidence 75310 1344444443 23 47766 67778999999999999999999986 432111 001111111123 457
Q ss_pred eccccCCCcccce-eeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHc
Q psy8199 489 LSKGITGGYLPLS-LVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTS 567 (965)
Q Consensus 489 ~sK~l~gG~~pig-~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~ 567 (965)
|||+++. ++| ++++++++++.+..- .. ..+..++.+.++++++.++|+.. ....++.++.++++.+.|++
T Consensus 195 ~SK~~~~---~~G~~~~~~~~~i~~~~~~---~~-~~~~~~~~~~~~~a~~~~~l~~~--~~~~~~~~~~r~~l~~~L~~ 265 (333)
T PRK10534 195 LSKGLGT---PVGSLLVGNRDYIKRARRW---RK-MTGGGMRQAGILAAAGLYALKHN--VARLQEDHDNAAWLAEQLRE 265 (333)
T ss_pred eEcCCCC---cccceEEcCHHHHHHHHHH---HH-HhCCchhhHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHh
Confidence 9997654 578 577899998877641 00 11222334456677777777532 23344455566788888876
Q ss_pred ccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecCCEEEEeCCcccCHHHHHHHHHhhhc
Q psy8199 568 LITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQ 643 (965)
Q Consensus 568 l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~lR~~p~~~~t~~~i~~~~~~l~~ 643 (965)
+ ++...++.++|+.+.+. + .....+.+.|.++||+++++ ..+|+...+.++.++++++++++..
T Consensus 266 ~----g~~~~~~~~nfv~~~~~--~-----~~~~~~~~~l~~~gi~v~~~-~~~rl~~~~r~t~e~~~~~~~~l~~ 329 (333)
T PRK10534 266 A----GADVMRQDTNMLFVRVG--E-----EQAAALGEYMRERNVLINAS-PIVRLVTHLDVSREQLAEVVAHWRA 329 (333)
T ss_pred C----CCccCCCCceEEEEECC--c-----hhHHHHHHHHHHcCeeecCC-ceEEEEEEeCCCHHHHHHHHHHHHH
Confidence 5 34444567888777653 1 11346778899999999885 4688886666899999999999864
|
|
| >PRK05628 coproporphyrinogen III oxidase; Validated | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.3e-17 Score=183.63 Aligned_cols=202 Identities=15% Similarity=0.180 Sum_probs=156.1
Q ss_pred cCCCCCCCCCCCCCCcCCCCccccc--CCCHHHHHHHHHHHHHC------CCCEEEEeeccCCCCcccHHHHHHHHHHHH
Q psy8199 689 TGGCTEDCGYCPQSTHYNTEITATK--ILSIESVITAAQKAKSD------GATRFCMGAAWRELKDRDLDNIENMICEVK 760 (965)
Q Consensus 689 s~~C~~~C~fC~~~~~~~~~~~~~~--~~~~eei~~~~~~~~~~------g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~ 760 (965)
-..|+.+|.||.+............ ..-.+.+.++++...+. .++.+++.||. | ...+.+.+.++++.++
T Consensus 9 iPFC~~~C~yC~f~~~~~~~~~~~~~~~~Y~~~l~~Ei~~~~~~~~~~~~~i~~i~~GGGT-P-s~l~~~~l~~ll~~i~ 86 (375)
T PRK05628 9 VPFCATRCGYCDFNTYTAAELGGGASPDGYLDALRAELELAAAVLGDPAPPVSTVFVGGGT-P-SLLGAEGLARVLDAVR 86 (375)
T ss_pred eCCcCCcCCCCCCCcccccccccccCHHHHHHHHHHHHHHHHHhhccCCCceeEEEeCCCc-c-ccCCHHHHHHHHHHHH
Confidence 3679999999998754222110000 01156777777654432 36778886664 2 3344566666666666
Q ss_pred h-c----CcEe--EEecCCCCHHHHHHHHHhCCCeEeccCCC-CHHHHhcccCCCCHHHHHHHHHHHHHcCCc-eeeeEE
Q psy8199 761 K-I----GLET--CLTLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGIN-ICCGGI 831 (965)
Q Consensus 761 ~-~----~~~i--~~~~~~~~~e~l~~Lk~aG~~~i~i~~es-~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~-v~~~~i 831 (965)
+ . +.++ .+++..++++.++.|+++|++++++|+|| ++++++.+.+.++.++..++++.++++|+. ++..+|
T Consensus 87 ~~~~~~~~~e~t~e~~p~~i~~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~R~~s~~~~~~a~~~l~~~g~~~v~~dli 166 (375)
T PRK05628 87 DTFGLAPGAEVTTEANPESTSPEFFAALRAAGFTRVSLGMQSAAPHVLAVLDRTHTPGRAVAAAREARAAGFEHVNLDLI 166 (375)
T ss_pred HhCCCCCCCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 4 1 2334 45889999999999999999999999999 999999999999999999999999999997 999999
Q ss_pred Eec-CCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCCC------CCCCHHHHHHHHHHHHHHCC
Q psy8199 832 IGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGS------SILDPLEFIRTIAVARITMP 894 (965)
Q Consensus 832 ~Gl-~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~~------~~~~~~~~~~~ia~~R~~lp 894 (965)
+|+ |||.+++.++++.+.+++ ++.+.++.+.+.|||+++.. +.++.++..++...++.++.
T Consensus 167 ~GlPgqt~~~~~~tl~~~~~l~--~~~i~~y~l~~~~gT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~l~ 234 (375)
T PRK05628 167 YGTPGESDDDWRASLDAALEAG--VDHVSAYALIVEDGTALARRVRRGELPAPDDDVLADRYELADARLS 234 (375)
T ss_pred ccCCCCCHHHHHHHHHHHHhcC--CCEEEeeeeecCCCChHHHHhhcCCCCCCChHHHHHHHHHHHHHHH
Confidence 999 699999999999999999 99999999999999999752 34556667777777776653
|
|
| >PRK07590 L,L-diaminopimelate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.8e-16 Score=178.52 Aligned_cols=343 Identities=9% Similarity=-0.011 Sum_probs=200.9
Q ss_pred CcccccccccchhccCCCCCHHHHHHHHHHHhhc------cccccCCCCcHHHHHHHHHHHhhc--CCCCCeEEEcCChh
Q psy8199 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKL------EHVMLSNLTHKPVIKLSEKLSSLT--QYKLGHCFYGSDGA 324 (965)
Q Consensus 253 G~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~------~~~~~~~~~~~~~~~la~~l~~~~--~~~~~~v~~~~sGs 324 (965)
|..++|+..|. ..++ .+|.+.+++.+.+... ..|....+..+.+..+++.+.+.. +...++|++|+|+.
T Consensus 33 ~~~~i~l~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~ 109 (409)
T PRK07590 33 EAKIIRLGIGD--VTQP-LPPAVIEAMHKAVDEMGTAETFRGYGPEQGYDFLREKIAENDYQARGCDISADEIFISDGAK 109 (409)
T ss_pred CCceEEecCcC--CCCC-CCHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHHhcCCcCChhhEEECCCHH
Confidence 56788887764 3344 4688899998887652 123223344556666666665443 34667999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHH
Q psy8199 325 SAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIA 404 (965)
Q Consensus 325 eA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (965)
+|+...+.+. .++++|++.+++|.++...+...+.... .. -......+..+|........
T Consensus 110 ~al~~l~~~~---------~~gd~V~v~~P~Y~~~~~~~~~~g~~~~-~~-~~~~~~~~~~v~~~~~~~~~--------- 169 (409)
T PRK07590 110 CDTGNILDIF---------GPDNTIAVTDPVYPVYVDTNVMAGRTGE-AN-EDGRYSGIVYLPCTAENNFV--------- 169 (409)
T ss_pred HHHHHHHHhc---------CCCCEEEEeCCCCcchHHHHHHcCCccc-cc-ccccccceeEeecccccCCc---------
Confidence 9988754322 3568899999999988544333332100 00 00000013333331100000
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccccc-cccccc-CC
Q psy8199 405 RCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKF-FACEHA-EI 482 (965)
Q Consensus 405 ~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~-~~~~~~-~~ 482 (965)
.|+ .+ ....+.++++| +|++|.+. +.+.+++|.++|++||+++|.||+|..|-..+.. .....+ +.
T Consensus 170 -~d~-------~~-~~~k~i~l~nP--~NPTG~~~-s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~ 237 (409)
T PRK07590 170 -PEL-------PE-EKVDIIYLCFP--NNPTGTVL-TKEQLKAWVDYAKENGSLILFDAAYEAFISDPSLPHSIYEIEGA 237 (409)
T ss_pred -ccC-------cc-cCceEEEEeCC--CCCcCCcC-CHHHHHHHHHHHHHcCeEEEEEccchhhccCCCCCcchhhCCCc
Confidence 011 11 12234455566 89999876 7888999999999999999999999877433321 111111 11
Q ss_pred Cccee---eeccccC-CCcccceeeeecHHHHHhhhccCCc-----ccccccCCC-CCCHHHHHHHHHHHHHHhc---cc
Q psy8199 483 WPDFL---CLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNI-----NIFLHSHSY-SGNPLACCAALATLEIFNK---DN 549 (965)
Q Consensus 483 ~pDiv---t~sK~l~-gG~~pig~v~~~~~i~~~~~~~~~~-----~~~~~~~t~-~~~~~~~aaa~a~L~~~~~---~~ 549 (965)
...++ +|||.++ .| +++|++++++++++.+..+... .......++ +.+.+++.++.++|+--.. ..
T Consensus 238 ~~~vi~~~SfSK~~~~pG-lRiG~~i~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~~~~ 316 (409)
T PRK07590 238 RECAIEFRSFSKTAGFTG-TRCAYTVVPKELKGKTSDGEGVSLNSLWNRRQSTKFNGVSYIVQRAAEAVYSPEGKAQIKE 316 (409)
T ss_pred ccceEEEecCccccCCcC-ceeEEEEcCHHHhhhccccchhhhHHHHHHHHhhcccCcCHHHHHHHHHHhcCCcHHHHHH
Confidence 11233 6899886 45 8999999999988732100000 000112233 3577888888777742101 12
Q ss_pred HHHHHHHHHHHHHHHHHcccCCCceeeeece-eEEEEEEEeecCccchhhHHHHHHHHHH-HcCcEEeec-------CCE
Q psy8199 550 ILQRISQDMKKITKALTSLITHPKIINFRQK-GMIWAFDVIIEDPEQIETFSKKFFVAAL-KNELLLRPI-------GNT 620 (965)
Q Consensus 550 ~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~-G~~~~i~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~-------~~~ 620 (965)
..+.++++.+++.+.|+.. ++....+. |+++++.+. +.. .+..+...+. +.||.+.|+ .++
T Consensus 317 ~~~~~~~~r~~l~~~L~~~----~~~~~~~~g~~f~wi~~~--~~~----~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~ 386 (409)
T PRK07590 317 LIDYYMENAKIIREGLESA----GFEVYGGVNAPYIWVKTP--DGM----SSWDFFDKLLQEANVVGTPGSGFGPSGEGY 386 (409)
T ss_pred HHHHHHHHHHHHHHHHHhc----CCceecCCcceEEEEECC--CCC----CHHHHHHHHHHHCCEEEeChhHhCCCCCCE
Confidence 3455556666666666553 34444454 556666654 211 1335666665 679999874 258
Q ss_pred EEEeCCcccCHHHHHHHHHhhhc
Q psy8199 621 VYLMPPYILNKNEIQHMTSAIFQ 643 (965)
Q Consensus 621 lR~~p~~~~t~~~i~~~~~~l~~ 643 (965)
+|++ +..+++++++.++++.+
T Consensus 387 iRi~--~~~~~~~l~~~l~rl~~ 407 (409)
T PRK07590 387 FRLS--AFGSRENVLEAMERIKK 407 (409)
T ss_pred EEEE--ccCCHHHHHHHHHHHHh
Confidence 9998 56788999999988764
|
|
| >PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.5e-16 Score=177.18 Aligned_cols=329 Identities=10% Similarity=0.071 Sum_probs=202.3
Q ss_pred ccCCCCCHHHHHHHHHHHhhcccc-----ccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHh
Q psy8199 266 NLFGHSNSYINKALKNQLNKLEHV-----MLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYN 340 (965)
Q Consensus 266 ~~lGh~~p~v~~av~~~~~~~~~~-----~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~ 340 (965)
.-+|.-++++++|+.+........ .......+...++.+.++++++ .+.++|++||++|+..+++....
T Consensus 27 ~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lA~~~g--~~~~~~~~g~t~a~~~al~~l~~---- 100 (387)
T PRK09331 27 QRGGILTPEARKALIEYGDGYSVCDYCPGRLDQIKKPPIADFHEDLAEFLG--MDEARVTHGAREGKFAVMHSLCK---- 100 (387)
T ss_pred hcCCCCCHHHHHHHHHHHhccCCCcccccccccccChHHHHHHHHHHHHhC--CCcEEEeCCHHHHHHHHHHHhcC----
Confidence 346778999999999877432211 1112335567899999999995 56889999999999999987632
Q ss_pred cCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhC--
Q psy8199 341 KGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKN-- 418 (965)
Q Consensus 341 ~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~-- 418 (965)
++++|++...+| .+...++...| ..+..+|.+...... .|++++++++++.
T Consensus 101 ----~gd~Vlv~~~~h-~s~~~~~~~~G------------~~~~~v~~~~~~~~~----------~d~~~l~~~l~~~~~ 153 (387)
T PRK09331 101 ----KGDYVVLDGLAH-YTSYVAAERAG------------LNVREVPKTGYPEYK----------ITPEAYAEKIEEVKE 153 (387)
T ss_pred ----CCCEEEECCCch-HHHHHHHHHcC------------CEEEEEeCccCcCCC----------cCHHHHHHHHHHhhh
Confidence 557777765544 33222222111 123344431011111 4788888888643
Q ss_pred --CCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCccee--eeccccC
Q psy8199 419 --HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL--CLSKGIT 494 (965)
Q Consensus 419 --~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDiv--t~sK~l~ 494 (965)
.+++.+|+++. +++++|.+.+ +++|.++|++||+++|+|++|+ +|..+ +....+| .|++ +++|+++
T Consensus 154 ~~~~~~~lV~l~~-~~~~tG~~~~----l~~I~~la~~~g~~livD~a~~-~g~~~--~~~~~~g--~D~~~~s~~K~l~ 223 (387)
T PRK09331 154 ETGKPPALALLTH-VDGNYGNLAD----AKKVAKVAHEYGIPFLLNGAYT-VGRMP--VDGKKLG--ADFIVGSGHKSMA 223 (387)
T ss_pred ccCCCCEEEEEEC-CCCCCccccc----HHHHHHHHHHcCCEEEEECCcc-cCCcC--CCHHHcC--CCEEEeeCccccc
Confidence 23577777777 7888998887 9999999999999999999996 44321 2222334 4655 5789998
Q ss_pred CCcccceeeeecHHHHHhhhccCCccccc------ccCCCCCCHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHc
Q psy8199 495 GGYLPLSLVMTTDKIYNSIYYKNNINIFL------HSHSYSGNPLACCAALATLEIFNK-DNILQRISQDMKKITKALTS 567 (965)
Q Consensus 495 gG~~pig~v~~~~~i~~~~~~~~~~~~~~------~~~t~~~~~~~~aaa~a~L~~~~~-~~~~~~~~~~~~~l~~~L~~ 567 (965)
++ .++|++++++++++.+.... .++. .+++. ++...++++++|+.+.+ ....++..++.+++++.|.+
T Consensus 224 ~~-~~~G~l~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~~~~aal~~~~~~~~~~~~~~~~~~~l~~~L~~ 298 (387)
T PRK09331 224 AS-APSGVLATTEEYADKVFRTS--RKFGVKEVELLGCTL--RGAPLVTLMASFPHVVERVKRWDEEVKKARWFVDELEK 298 (387)
T ss_pred CC-CCEEEEEECHHHHhhccccc--CCCcccceeeeceec--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 76 58999999999888765421 1111 12222 23344555566655432 22345556677788888876
Q ss_pred ccCCCceeee---eceeEEEEEEEeecCc--cchhhHHHHHHHHHHHcCcEEee-cCCEEEEeCCcccCHHHHHHHHHhh
Q psy8199 568 LITHPKIINF---RQKGMIWAFDVIIEDP--EQIETFSKKFFVAALKNELLLRP-IGNTVYLMPPYILNKNEIQHMTSAI 641 (965)
Q Consensus 568 l~~~~~i~~v---~g~G~~~~i~~~~~~~--~~~~~~~~~~~~~l~~~Gi~~~~-~~~~lR~~p~~~~t~~~i~~~~~~l 641 (965)
+ +++..+ .+...+..++...-+. ......+..+.+.|.++||...+ ....+|...+..+++++++.+++++
T Consensus 299 l---~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~~~~~~~~~i~ri~~~g~t~~di~~l~~aL 375 (387)
T PRK09331 299 I---EGFKQLGEKPRNHDLMKFETPSFDEIAKKHKRRGFFLYEELKKRGIHGIKPGATKEFKLSTYGLTWEQVEYVADAF 375 (387)
T ss_pred C---CCEEEeccCcCcCCeEEEeCCchhHHhhhccccchhHHHHHHHcCceEEccCCceEEEEEeccCCHHHHHHHHHHH
Confidence 5 344322 2234444444320000 00011134588889999998543 3344444434568999999999988
Q ss_pred hccc
Q psy8199 642 FQTF 645 (965)
Q Consensus 642 ~~~~ 645 (965)
.+..
T Consensus 376 ~~i~ 379 (387)
T PRK09331 376 KEIA 379 (387)
T ss_pred HHHH
Confidence 7553
|
|
| >PRK03967 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.4e-16 Score=176.93 Aligned_cols=306 Identities=12% Similarity=0.171 Sum_probs=190.8
Q ss_pred CCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHH
Q psy8199 252 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVAL 331 (965)
Q Consensus 252 dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al 331 (965)
.|...+|+..+. ++++ .+|.+.+++.+.+.... ...|+.....++.+.++++++.+.+++++++|+++++..++
T Consensus 16 ~~~~~i~l~~~~--~~~~-~~~~~~~~~~~~~~~~~---~~~Y~~~g~~~lr~~ia~~~~~~~~~I~~t~G~~~~l~~~~ 89 (337)
T PRK03967 16 EGNYRIWLDKNE--NPFD-LPEELKEEIFEELKRVP---FNRYPHITSDPLREAIAEFYGLDAENIAVGNGSDELISYLV 89 (337)
T ss_pred CCCceEEecCCC--CCCC-CCHHHHHHHHHHhhcCc---cccCCCCCHHHHHHHHHHHhCcCcceEEEcCCHHHHHHHHH
Confidence 445668877663 3454 56889999988775421 12344444567777888877767889999999999997766
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHH
Q psy8199 332 KMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDL 411 (965)
Q Consensus 332 ~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l 411 (965)
+.. .++.|++.+++|..+.......+ ..+..++..... . .|++++
T Consensus 90 ~~~----------~gd~V~v~~P~y~~~~~~~~~~g-------------~~~~~v~~~~~~-~-----------~d~~~l 134 (337)
T PRK03967 90 KLF----------EGKHIVITPPTFGMYSFYAKLNG-------------IPVIDVPLKEDF-T-----------IDGERI 134 (337)
T ss_pred HHh----------CCCeEEEeCCChHHHHHHHHHcC-------------CeEEEeecCCCC-C-----------cCHHHH
Confidence 543 35789999999976532211111 123333332111 1 255667
Q ss_pred HHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCccee---e
Q psy8199 412 EILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL---C 488 (965)
Q Consensus 412 e~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDiv---t 488 (965)
++.+. ...+.+++.| +|++|.+.+ .++|.+++ ++++++|+||+|..|.. .... ......++++ +
T Consensus 135 ~~~~~---~~~~v~~~~P--~NPtG~~~~----~~~l~~i~-~~~~~ii~De~y~~~~~-~~~~--~~~~~~~~vi~l~S 201 (337)
T PRK03967 135 AEKAK---NASAVFICSP--NNPTGNLQP----EEEILKVL-ETGKPVVLDEAYAEFSG-KSLI--GLIDEYPNLILLRT 201 (337)
T ss_pred HHhcc---CCCEEEEeCC--CCCCCCCCC----HHHHHHHH-hcCCEEEEECchhhhcc-cchH--HHHhhCCCEEEEec
Confidence 66542 2224455666 999998876 45566677 47999999999987732 1111 1112234555 5
Q ss_pred eccccC-CCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHH
Q psy8199 489 LSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK-DNILQRISQDMKKITKALT 566 (965)
Q Consensus 489 ~sK~l~-gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~-~~~~~~~~~~~~~l~~~L~ 566 (965)
|||.++ .| +++|++++++++++.+..- ...++.+.++++++.++|+..+. .+..+...+..+++.+.|.
T Consensus 202 ~SK~~~l~G-lRiG~iv~~~~~i~~~~~~--------~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~ 272 (337)
T PRK03967 202 FSKAFGLAG-IRAGYAIANEEIIDALYRI--------KPPFSLNILTMKIVRLALDHYDLIEERIDYIIKERERVRRELG 272 (337)
T ss_pred chHhhcchh-hhheeeecCHHHHHHHHhh--------cCCCCCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 899887 56 8999999999999888651 13456678899999888852110 1122333444455555554
Q ss_pred cccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecC----CEEEEeCCcccCHHHHHHHHHhhh
Q psy8199 567 SLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG----NTVYLMPPYILNKNEIQHMTSAIF 642 (965)
Q Consensus 567 ~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~----~~lR~~p~~~~t~~~i~~~~~~l~ 642 (965)
+. ..++.|+++.+.+ .+.+.|.++||.+++.. +++|++ ..+.++.+++++++.
T Consensus 273 ~~-------~~~~~~~~~~~~~-------------~~~~~l~~~gi~v~~~~~~~~~~~Ri~---~~~~~~~~~l~~~l~ 329 (337)
T PRK03967 273 EY-------AYPSDANFLLLKL-------------DAYDYLLENGIVVRKLSGRLEGHIRVT---VGKREENDEFIKALK 329 (337)
T ss_pred cC-------cCCCCCcEEEEhH-------------HHHHHHHHCCEEEEeCCCCCCCeEEEe---cCCHHHHHHHHHHHH
Confidence 32 1234455554432 15678888999997642 689999 345566667766664
Q ss_pred c
Q psy8199 643 Q 643 (965)
Q Consensus 643 ~ 643 (965)
.
T Consensus 330 ~ 330 (337)
T PRK03967 330 E 330 (337)
T ss_pred H
Confidence 3
|
|
| >PRK08898 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=6e-17 Score=181.79 Aligned_cols=201 Identities=9% Similarity=0.108 Sum_probs=158.4
Q ss_pred cCCCCCCCCCCCCCCcCCCCccccc-CCCHHHHHHHHHHHHH----CCCCEEEEeeccCCCCcccHHHHHHHHHHHHhc-
Q psy8199 689 TGGCTEDCGYCPQSTHYNTEITATK-ILSIESVITAAQKAKS----DGATRFCMGAAWRELKDRDLDNIENMICEVKKI- 762 (965)
Q Consensus 689 s~~C~~~C~fC~~~~~~~~~~~~~~-~~~~eei~~~~~~~~~----~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~- 762 (965)
-..|+.+|.||.|............ ..=.+.+.++++.... ..++.++|.||.. ...+.+.+.+++..+++.
T Consensus 26 IPFC~~~C~yC~f~~~~~~~~~~~~~~~Y~~~l~~ei~~~~~~~~~~~i~siy~GGGTP--s~L~~~~L~~ll~~i~~~~ 103 (394)
T PRK08898 26 FPWCVRKCPYCDFNSHEWKDGGAIPEAAYLDALRADLEQALPLVWGRQVHTVFIGGGTP--SLLSAAGLDRLLSDVRALL 103 (394)
T ss_pred eCCccCcCCCCCCcccccCCCCccCHHHHHHHHHHHHHHHHHhccCCceeEEEECCCCc--CCCCHHHHHHHHHHHHHhC
Confidence 3679999999998764222110000 0124666666664432 2477888877743 445677788888777752
Q ss_pred ------CcEeEEecCCCCHHHHHHHHHhCCCeEeccCCC-CHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEec-
Q psy8199 763 ------GLETCLTLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL- 834 (965)
Q Consensus 763 ------~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~~es-~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl- 834 (965)
.+.+.++++.++.+.++.|+++|++++++|+|| ++++++.+.+.++.++..++++.+++.+..+++++|+|+
T Consensus 104 ~~~~~~eit~E~~p~~~~~e~L~~l~~~GvnrisiGvQS~~~~~L~~l~R~~~~~~~~~~i~~~~~~~~~v~~dlI~GlP 183 (394)
T PRK08898 104 PLDPDAEITLEANPGTFEAEKFAQFRASGVNRLSIGIQSFNDAHLKALGRIHDGAEARAAIEIAAKHFDNFNLDLMYALP 183 (394)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHcCCCeEEEecccCCHHHHHHhCCCCCHHHHHHHHHHHHHhCCceEEEEEcCCC
Confidence 244566889999999999999999999999999 999999999999999999999999998888999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCCCC--CCCHHHHHHHHHHHHHHC
Q psy8199 835 SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSS--ILDPLEFIRTIAVARITM 893 (965)
Q Consensus 835 ~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~~~--~~~~~~~~~~ia~~R~~l 893 (965)
|+|.+++.++++.+.+++ ++.|.++.++|.|||++++.. .++.++..++...++..|
T Consensus 184 gqt~~~~~~~l~~~~~l~--p~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~L 242 (394)
T PRK08898 184 GQTLDEALADVETALAFG--PPHLSLYHLTLEPNTLFAKFPPALPDDDASADMQDWIEARL 242 (394)
T ss_pred CCCHHHHHHHHHHHHhcC--CCEEEEeeeEECCCChhhhccCCCCChHHHHHHHHHHHHHH
Confidence 799999999999999999 999999999999999998643 345566667777776666
|
|
| >PRK06294 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.6e-17 Score=183.07 Aligned_cols=197 Identities=17% Similarity=0.171 Sum_probs=154.6
Q ss_pred CCCCCCCCCCCCCCcCCCC--cccccCCCHHHHHHH-HHHHHH----CCCCEEEEeeccCCCCcccHHHHHHHHHHHHh-
Q psy8199 690 GGCTEDCGYCPQSTHYNTE--ITATKILSIESVITA-AQKAKS----DGATRFCMGAAWRELKDRDLDNIENMICEVKK- 761 (965)
Q Consensus 690 ~~C~~~C~fC~~~~~~~~~--~~~~~~~~~eei~~~-~~~~~~----~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~- 761 (965)
..|+..|.||.|....... ...| .+.++++ +....+ ..++.+++.||. | ...+.+.+.++++.+++
T Consensus 14 PFC~~~C~yC~f~~~~~~~~~~~~y----~~~l~~E~~~~~~~~~~~~~i~~iy~GGGT-P-s~l~~~~l~~ll~~i~~~ 87 (370)
T PRK06294 14 PFCTKKCHYCSFYTIPYKEESVSLY----CNAVLKEGLKKLAPLRCSHFIDTVFFGGGT-P-SLVPPALIQDILKTLEAP 87 (370)
T ss_pred CCccCcCCCCcCcccCCCccCHHHH----HHHHHHHHHHHhhhhccCCceeEEEECCCc-c-ccCCHHHHHHHHHHHHhC
Confidence 6699999999987532111 0011 2333333 222221 246778886663 3 45567778888877765
Q ss_pred --cCcEeEEecCCCCHHHHHHHHHhCCCeEeccCCC-CHHHHhcccCCCCHHHHHHHHHHHHHcCCc-eeeeEEEec-CC
Q psy8199 762 --IGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGIN-ICCGGIIGL-SE 836 (965)
Q Consensus 762 --~~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~~es-~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~-v~~~~i~Gl-~e 836 (965)
..+.+.+++..++++.++.|+++|++++++|+|| +++.++.+.+.++.++..++++.++++|+. ++..+|+|+ |+
T Consensus 88 ~~~eit~E~~P~~~~~~~l~~l~~~G~nrislGvQS~~~~~L~~l~R~~~~~~~~~ai~~~~~~g~~~v~~Dli~GlPgq 167 (370)
T PRK06294 88 HATEITLEANPENLSESYIRALALTGINRISIGVQTFDDPLLKLLGRTHSSSKAIDAVQECSEHGFSNLSIDLIYGLPTQ 167 (370)
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHCCCCEEEEccccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCC
Confidence 2456677899999999999999999999999999 999999999999999999999999999995 899999999 69
Q ss_pred CHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCCC------CCCCHHHHHHHHHHHHHHCC
Q psy8199 837 SRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGS------SILDPLEFIRTIAVARITMP 894 (965)
Q Consensus 837 t~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~~------~~~~~~~~~~~ia~~R~~lp 894 (965)
|.+++.++++.+.+++ ++.++++.++|.|||+++.. ..++.++..++...++..|.
T Consensus 168 t~~~~~~~l~~~~~l~--~~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 229 (370)
T PRK06294 168 SLSDFIVDLHQAITLP--ITHISLYNLTIDPHTSFYKHRKRLLPSIADEEILAEMSLAAEELLT 229 (370)
T ss_pred CHHHHHHHHHHHHccC--CCeEEEeeeEecCCChHHHHHhcCCCCCcCHHHHHHHHHHHHHHHH
Confidence 9999999999999999 99999999999999998752 23566777777777776654
|
|
| >PRK06836 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=8.8e-16 Score=174.59 Aligned_cols=333 Identities=15% Similarity=0.086 Sum_probs=206.6
Q ss_pred CcccccccccchhccCCCCCHHHHHHHHHHHhhc----cccccCCCCcHHHHHHHHHHHhhcC--CCCCeEEEcCChhHH
Q psy8199 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKL----EHVMLSNLTHKPVIKLSEKLSSLTQ--YKLGHCFYGSDGASA 326 (965)
Q Consensus 253 G~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~----~~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~~~sGseA 326 (965)
+...+|+..|.+. + ..++.+.+++.+.+... ..+....+..+.+..+++.+....+ .+.+++++++|+++|
T Consensus 32 ~~~~~~l~~g~p~--~-~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~G~~~a 108 (394)
T PRK06836 32 ADNVFDFSLGNPS--V-PPPAAVKEALRELAEEEDPGLHGYMPNAGYPEVREAIAESLNRRFGTPLTADHIVMTCGAAGA 108 (394)
T ss_pred CCCeEEecCcCCC--C-CCCHHHHHHHHHHHhcCCcCcccCCCCCCCHHHHHHHHHHHHHHhCCCCCcCcEEEeCChHHH
Confidence 3467888776432 2 24678888888766532 2222233444555666666665432 356789999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHH
Q psy8199 327 VEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARC 406 (965)
Q Consensus 327 ~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (965)
+..+++.... +++.|++.+++|.++...... ....+..+|.....+. .
T Consensus 109 l~~~~~~l~~--------~gd~Vli~~p~~~~~~~~~~~-------------~g~~v~~v~~~~~~~~-----------~ 156 (394)
T PRK06836 109 LNVALKAILN--------PGDEVIVFAPYFVEYRFYVDN-------------HGGKLVVVPTDTDTFQ-----------P 156 (394)
T ss_pred HHHHHHHhcC--------CCCEEEEcCCCCccHHHHHHH-------------cCCEEEEEecCCccCc-----------C
Confidence 9998886632 567899999998876322211 1123344443221111 2
Q ss_pred HHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHh------cCCeEEEeccccCCCccccccccccc
Q psy8199 407 AIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNN------YNIHLIADEIAVGCGRTGKFFACEHA 480 (965)
Q Consensus 407 d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~------~g~llI~DEv~tg~gr~G~~~~~~~~ 480 (965)
|++++++++.. ++.+|++.. ++|++|.+. +.+.+++|.++|++ ||+++|.||+|..|-..|.... ...
T Consensus 157 d~~~l~~~~~~---~~~~v~~~~-p~NPtG~~~-~~~~~~~l~~la~~~~~~~~~~~~ii~De~y~~~~~~~~~~~-~~~ 230 (394)
T PRK06836 157 DLDALEAAITP---KTKAVIINS-PNNPTGVVY-SEETLKALAALLEEKSKEYGRPIYLISDEPYREIVYDGAEVP-YIF 230 (394)
T ss_pred CHHHHHhhcCc---CceEEEEeC-CCCCCCcCC-CHHHHHHHHHHHHHhhhccCCCeEEEEeccccccccCCCCCC-ChH
Confidence 67888888852 455566655 589999876 67779999999999 8999999999987743332111 011
Q ss_pred CCCccee---eeccccC-CCcccceeeeecHHHHHh--hhccCCccccc-ccCCCCCCHHHHHHHHHHHHHHhcccHHHH
Q psy8199 481 EIWPDFL---CLSKGIT-GGYLPLSLVMTTDKIYNS--IYYKNNINIFL-HSHSYSGNPLACCAALATLEIFNKDNILQR 553 (965)
Q Consensus 481 ~~~pDiv---t~sK~l~-gG~~pig~v~~~~~i~~~--~~~~~~~~~~~-~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~ 553 (965)
...++++ +|||.++ .| +++|++++++++.+. +... ..... ..+..+.+++++.++...++ +....+.
T Consensus 231 ~~~~~~i~~~S~SK~~~~pG-lRiG~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~q~~~~~~l~---~~~~~~~ 304 (394)
T PRK06836 231 KYYDNSIVVYSFSKSLSLPG-ERIGYIAVNPEMEDADDLVAA--LVFANRILGFVNAPALMQRVVAKCLD---ATVDVSI 304 (394)
T ss_pred HccCcEEEEecchhhccCcc-eeeEEEecCHHHhhhHHHHHH--HHHHhhccccccCCHHHHHHHHHHhC---ChHHHHH
Confidence 1123344 5899997 45 899999998876432 1110 00000 01123456777777766663 2223445
Q ss_pred HHHHHHHHHHHHHcccCCCceeeeeceeE-EEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec-----CCEEEEeCCc
Q psy8199 554 ISQDMKKITKALTSLITHPKIINFRQKGM-IWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-----GNTVYLMPPY 627 (965)
Q Consensus 554 ~~~~~~~l~~~L~~l~~~~~i~~v~g~G~-~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-----~~~lR~~p~~ 627 (965)
.+++.+.+.+.|++. ++....+.|. ++++.+. .. ...++.+.|.++||.+.|+ ++++||+.
T Consensus 305 ~~~~r~~l~~~L~~~----g~~~~~~~gg~~~~~~~~--~~-----~~~~~~~~l~~~gv~v~~g~~f~~~~~iRi~~-- 371 (394)
T PRK06836 305 YKRNRDLLYDGLTEL----GFECVKPQGAFYLFPKSP--EE-----DDVAFCEKAKKHNLLLVPGSGFGCPGYFRLSY-- 371 (394)
T ss_pred HHHHHHHHHHHHHhC----CCEeecCCceEEEEEeCC--CC-----CHHHHHHHHHhCCEEEECchhcCCCCeEEEEe--
Confidence 666667777777653 3444445554 4444442 11 1345667888999999986 36899995
Q ss_pred ccCHHHHHHHHHhhhccc
Q psy8199 628 ILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 628 ~~t~~~i~~~~~~l~~~~ 645 (965)
..+++++.+.++++.+.+
T Consensus 372 ~~~~~~~~~~i~~l~~~l 389 (394)
T PRK06836 372 CVDTETIERSLPAFEKLA 389 (394)
T ss_pred cCCHHHHHHHHHHHHHHH
Confidence 468899999988887554
|
|
| >PRK04781 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.4e-16 Score=178.89 Aligned_cols=284 Identities=10% Similarity=0.097 Sum_probs=183.8
Q ss_pred HHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcc
Q psy8199 299 VIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTS 378 (965)
Q Consensus 299 ~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~ 378 (965)
..+|.+.+++.++.+.++|++++|+++++..++..... ++++.|++.+++|..+...+...
T Consensus 61 ~~~lr~~ia~~~~~~~~~I~~t~G~~~~l~~~~~~~~~-------~g~~~vlv~~p~y~~~~~~~~~~------------ 121 (364)
T PRK04781 61 PPGLRSALAALYGCAPEQLLIGRGSDEAIDLLVRALCV-------PGRDAVLVTPPVFGMYAVCARLQ------------ 121 (364)
T ss_pred HHHHHHHHHHHhCcChHHEEEeCCHHHHHHHHHHHhcC-------CCCCeEEEcCCChHHHHHHHHHc------------
Confidence 46777778887776778999999999999999886633 23367888888775442221111
Q ss_pred cCCCeeEecCCC-CCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCC
Q psy8199 379 LLNKTYIITTPD-SRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNI 457 (965)
Q Consensus 379 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~ 457 (965)
...+..+|... ..+.. .|++++++.+.. .++.+|++.. ++|++|.+. +.+.++++.+.|+ +++
T Consensus 122 -g~~~~~v~~~~~~~~~~----------~d~~~l~~~~~~--~~~~lv~l~~-p~NPTG~~~-~~~~~~~l~~~~~-~~~ 185 (364)
T PRK04781 122 -NAPLVEVPLVDGADGFH----------ADVPAIVAAALA--SNAKLVFLCS-PSNPAGSAI-ALDQIERALQALQ-GKA 185 (364)
T ss_pred -CCEEEEEecCCCccCCC----------cCHHHHHHHHhc--cCCeEEEEcC-CCCCCCCCc-CHHHHHHHHHhCC-CCc
Confidence 11233444311 00100 245666444322 2344444444 499999887 5666777777775 479
Q ss_pred eEEEeccccCCCcccccccccccCCCccee---eeccccC-CCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHH
Q psy8199 458 HLIADEIAVGCGRTGKFFACEHAEIWPDFL---CLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPL 533 (965)
Q Consensus 458 llI~DEv~tg~gr~G~~~~~~~~~~~pDiv---t~sK~l~-gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~ 533 (965)
++|+||+|..|.... ......+..++++ +|||.++ .| +++|++++++++++.+.. ....++.+.+
T Consensus 186 ~iI~Deay~~f~~~~--~~~~~~~~~~~vi~~~SfSK~~gl~G-lRvGy~v~~~~l~~~l~~--------~~~~~~~~~~ 254 (364)
T PRK04781 186 LVVVDEAYGEFSDVP--SAVGLLARYDNLAVLRTLSKAHALAA-ARIGSLIANAELIAVLRR--------CQAPYPVPTP 254 (364)
T ss_pred EEEEeCcchhhcCCc--chHHHHhhCCCEEEEecChhhccccc-ceeeeeeCCHHHHHHHHh--------ccCCCCCCHH
Confidence 999999998874211 1112223335555 6899887 45 899999999999998875 2245677888
Q ss_pred HHHHHHHHHHHHh---cccHHHHHHHHHHHHHHHHHcccCCCcee-eeeceeEEEEEEEeecCccchhhHHHHHHHHHHH
Q psy8199 534 ACCAALATLEIFN---KDNILQRISQDMKKITKALTSLITHPKII-NFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALK 609 (965)
Q Consensus 534 ~~aaa~a~L~~~~---~~~~~~~~~~~~~~l~~~L~~l~~~~~i~-~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~ 609 (965)
++.++.++|+.-. -.+..+.++++.+++.+.|+.+ +++. ..++.|+++.+.+. + ...+.+.|.+
T Consensus 255 ~~~~a~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~---~~~~~~~p~~g~f~~~~~~--~-------~~~~~~~l~~ 322 (364)
T PRK04781 255 CAALAEQALSAPALAVTARRVAEVRAERERLHAALAQL---PGVRRVYPSQGNFLLVRFD--D-------AEAAFQALLA 322 (364)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhC---CCCCeECCCCCcEEEEEcC--C-------HHHHHHHHHH
Confidence 8888888775311 0122344555666677766554 4442 45567888877663 2 2457788899
Q ss_pred cCcEEeec------CCEEEEeCCcccCHHHHHHHHHhhhc
Q psy8199 610 NELLLRPI------GNTVYLMPPYILNKNEIQHMTSAIFQ 643 (965)
Q Consensus 610 ~Gi~~~~~------~~~lR~~p~~~~t~~~i~~~~~~l~~ 643 (965)
+||.++++ ++++|++ ..+.++.+.+++++..
T Consensus 323 ~gI~v~~~~~~~~~~~~~Ris---~~~~~~~~~l~~al~~ 359 (364)
T PRK04781 323 AGVVVRDQRAAPRLSDALRIT---LGTPEQNDRVLAALQR 359 (364)
T ss_pred CCeEEeeCCCCCCCCCeEEEe---CCCHHHHHHHHHHHHH
Confidence 99999874 2689999 4577888888888764
|
|
| >PRK06582 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.8e-17 Score=182.10 Aligned_cols=201 Identities=13% Similarity=0.146 Sum_probs=159.3
Q ss_pred cCCCCCCCCCCCCCCcCCCCcccccCCCHHHHHHHHHHHHH----CCCCEEEEeeccCCCCcccHHHHHHHHHHHHhc--
Q psy8199 689 TGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKS----DGATRFCMGAAWRELKDRDLDNIENMICEVKKI-- 762 (965)
Q Consensus 689 s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~----~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~-- 762 (965)
-..|..+|.||.|.+....... .. .=.+.+.++++...+ ..++.++|.||. | ...+.+.+.++++.+++.
T Consensus 18 iPFC~~~C~yC~f~~~~~~~~~-~~-~Y~~aL~~Ei~~~~~~~~~~~i~tiy~GGGT-P-s~l~~~~l~~ll~~i~~~~~ 93 (390)
T PRK06582 18 WPFCLSKCPYCDFNSHVASTID-HN-QWLKSYEKEIEYFKDIIQNKYIKSIFFGGGT-P-SLMNPVIVEGIINKISNLAI 93 (390)
T ss_pred eCCCcCcCCCCCCeeccCCCCC-HH-HHHHHHHHHHHHHHHHccCCceeEEEECCCc-c-ccCCHHHHHHHHHHHHHhCC
Confidence 3679999999998764221110 00 012344445443332 347788887774 3 345567777777777652
Q ss_pred -----CcEeEEecCCCCHHHHHHHHHhCCCeEeccCCC-CHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEec-C
Q psy8199 763 -----GLETCLTLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL-S 835 (965)
Q Consensus 763 -----~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~~es-~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl-~ 835 (965)
.+.+.+++..++.+.++.|+++|++++++|+|| +++.++.+.+.|+.++.+++++.+++++..++..+|+|+ |
T Consensus 94 ~~~~~eitiE~nP~~~~~e~l~~l~~~GvnRiSiGvQS~~d~~L~~lgR~h~~~~~~~ai~~~~~~~~~v~~DlI~GlPg 173 (390)
T PRK06582 94 IDNQTEITLETNPTSFETEKFKAFKLAGINRVSIGVQSLKEDDLKKLGRTHDCMQAIKTIEAANTIFPRVSFDLIYARSG 173 (390)
T ss_pred CCCCCEEEEEeCCCcCCHHHHHHHHHCCCCEEEEECCcCCHHHHHHcCCCCCHHHHHHHHHHHHHhCCcEEEEeecCCCC
Confidence 345666889999999999999999999999999 999999999999999999999999999789999999999 6
Q ss_pred CCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCC------CCCCCHHHHHHHHHHHHHHCCC
Q psy8199 836 ESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYG------SSILDPLEFIRTIAVARITMPT 895 (965)
Q Consensus 836 et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~------~~~~~~~~~~~~ia~~R~~lp~ 895 (965)
+|.+++.++++.+.+++ ++.|+++.+.+.|||++++ ...++.++..++...++..|..
T Consensus 174 qt~e~~~~~l~~~~~l~--p~his~y~L~i~~gT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~ 237 (390)
T PRK06582 174 QTLKDWQEELKQAMQLA--TSHISLYQLTIEKGTPFYKLFKEGNLILPHSDAAAEMYEWTNHYLES 237 (390)
T ss_pred CCHHHHHHHHHHHHhcC--CCEEEEecCEEccCChHHHHHhcCCCCCCChHHHHHHHHHHHHHHHH
Confidence 99999999999999999 9999999999999999974 2456778888888888887743
|
|
| >PLN02607 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.4e-16 Score=178.04 Aligned_cols=304 Identities=14% Similarity=0.153 Sum_probs=186.7
Q ss_pred CCCCcHHHHHHHHHHHhhcC----CCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCcccccccc
Q psy8199 292 SNLTHKPVIKLSEKLSSLTQ----YKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVT 367 (965)
Q Consensus 292 ~~~~~~~~~~la~~l~~~~~----~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~ 367 (965)
..+..+.+..+|+.+.+.++ ...+++++|+|+++|++.++.+... +++.|++..|.|.++........
T Consensus 94 ~~G~~~LR~aiA~~l~~~~~~~~~v~p~~Ivit~G~t~al~~l~~~l~~--------pGD~Vlv~~P~Y~~f~~~~~~~~ 165 (447)
T PLN02607 94 YHGLKSFRQAMASFMEQIRGGKARFDPDRIVLTAGATAANELLTFILAD--------PGDALLVPTPYYPGFDRDLRWRT 165 (447)
T ss_pred CcchHHHHHHHHHHHHHhcCCCCCcCHHHeEEcCChHHHHHHHHHHhCC--------CCCEEEEcCCCCcchHHHHHhcC
Confidence 34556677788888876543 4567999999999999998776543 67889999999988743221111
Q ss_pred CCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhC---CCcEE-EEEEccccccCCCcccCChH
Q psy8199 368 NIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKN---HNKIA-AIIIEPLVQCAGGMIMYDSI 443 (965)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~---~~~~a-aii~ep~v~~~~G~~~~~~~ 443 (965)
+ ..++.++...... + ..|++++++++.+. +.++. .++++| +|++|.+. +++
T Consensus 166 g------------~~vv~v~~~~~~~---------f-~~~~~~le~a~~~a~~~~~~vk~lll~nP--~NPtG~~~-s~e 220 (447)
T PLN02607 166 G------------VKIVPIHCDSSNN---------F-QVTPQALEAAYQEAEAANIRVRGVLITNP--SNPLGATV-QRS 220 (447)
T ss_pred C------------cEEEEEeCCCCCC---------C-cCCHHHHHHHHHHHHHhCCCeeEEEEeCC--CCCcCccc-CHH
Confidence 1 1122222211100 1 02667787777542 33455 445555 89999765 788
Q ss_pred HHHHHHHHHHhcCCeEEEeccccCCCccccccc-c-c---ccC---CCccee---eeccccC-CCcccceeeee-cHHHH
Q psy8199 444 YLKLVREICNNYNIHLIADEIAVGCGRTGKFFA-C-E---HAE---IWPDFL---CLSKGIT-GGYLPLSLVMT-TDKIY 510 (965)
Q Consensus 444 ~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~-~-~---~~~---~~pDiv---t~sK~l~-gG~~pig~v~~-~~~i~ 510 (965)
.+++|.++|++|++.+|+||+|..+-..+..|. . + ..+ ....++ +|||.++ .| +++|++++ ++++.
T Consensus 221 ~l~~l~~~~~~~~i~lI~DEiYa~~~f~~~~f~S~~s~~~~~~~~~~~~~v~vi~s~SK~fg~~G-lRvG~ivs~n~~l~ 299 (447)
T PLN02607 221 VLEDILDFVVRKNIHLVSDEIYSGSVFSASEFVSVAEIVEARGYKGVAERVHIVYSLSKDLGLPG-FRVGTIYSYNDKVV 299 (447)
T ss_pred HHHHHHHHHHHCCCEEEEeccccccccCCCCcccHHHHHhhcCCCCCcCcEEEEEcchhcCCCCc-ceEEEEEEcCHHHH
Confidence 899999999999999999999987422222121 1 1 111 112233 5899887 45 89999998 66776
Q ss_pred HhhhccCCcccccccCCC-CCCHHHHHHHHHHHHHHhcccHH--------HHHHHHHHHHHHHHHcccCCCceeeeece-
Q psy8199 511 NSIYYKNNINIFLHSHSY-SGNPLACCAALATLEIFNKDNIL--------QRISQDMKKITKALTSLITHPKIINFRQK- 580 (965)
Q Consensus 511 ~~~~~~~~~~~~~~~~t~-~~~~~~~aaa~a~L~~~~~~~~~--------~~~~~~~~~l~~~L~~l~~~~~i~~v~g~- 580 (965)
+.+.. . ..| ..+.+++.++.+.|+ ++++. +++++..+.+.+.|++. ++..+++.
T Consensus 300 ~~~~~------~---~~~~~~s~~~q~~~~~~L~---d~~~~~~~l~~~r~~l~~~~~~~~~~L~~~----gi~~~~~~a 363 (447)
T PLN02607 300 TTARR------M---SSFTLVSSQTQHLLASMLS---DEEFTENYIRTNRERLRKRYEMIVQGLRRA----GIECLKGNA 363 (447)
T ss_pred HHHHH------H---hhcCCCCHHHHHHHHHHhC---CchhHHHHHHHHHHHHHHHHHHHHHHHHhC----CCCcccCCe
Confidence 66654 1 122 346677777666663 33332 22333344444445432 44545554
Q ss_pred eEEEEEEEeecCccchhhHHHHHHHHHH-HcCcEEeecC-------CEEEEeCCcc-cCHHHHHHHHHhhhccccc
Q psy8199 581 GMIWAFDVIIEDPEQIETFSKKFFVAAL-KNELLLRPIG-------NTVYLMPPYI-LNKNEIQHMTSAIFQTFNE 647 (965)
Q Consensus 581 G~~~~i~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~~-------~~lR~~p~~~-~t~~~i~~~~~~l~~~~~~ 647 (965)
|+|+++++...-.........++++++. +.||.+.|+. +++|++ +. .+++.+++.++++...+..
T Consensus 364 g~fvw~~L~~~~~~~~~~~e~~l~~~ll~~~gV~v~pG~~f~~~~~g~fRi~--fa~~~~~~l~~gl~Ri~~~l~~ 437 (447)
T PLN02607 364 GLFCWMNLSPLLETPTREGELALWDSILREVKLNISPGSSCHCSEPGWFRVC--FANMSEDTLEVALKRIHRFMDR 437 (447)
T ss_pred eEEEEEEchHhhcCCCchhHHHHHHHHHHhCCEEEcCccccCCCCCCEEEEE--eccCCHHHHHHHHHHHHHHHHH
Confidence 6777777641000010111235666665 5799998742 699999 66 4789999999998776543
|
|
| >PRK08208 coproporphyrinogen III oxidase; Validated | Back alignment and domain information |
|---|
Probab=99.74 E-value=9.4e-17 Score=182.37 Aligned_cols=210 Identities=13% Similarity=0.149 Sum_probs=163.2
Q ss_pred CCeEEEeEeEeeccCCCCCCCCCCCCCCcCCCCcccccCCCHHHHHHHHHHHHHC----CCCEEEEeeccCCCCcccHHH
Q psy8199 676 ANEIELAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSD----GATRFCMGAAWRELKDRDLDN 751 (965)
Q Consensus 676 g~~~~~~~~i~~~s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~----g~~~i~l~~g~~~~~~~~~~~ 751 (965)
+..+.++..| ..|+.+|.||.+....... ........+.++++++...+. .+..+.+.||. | ...+.+.
T Consensus 37 ~~~~~lYvHI----PFC~~~C~yC~~~~~~~~~-~~~~~~y~~~L~~Ei~~~~~~~~~~~i~~i~~GGGT-P-s~l~~~~ 109 (430)
T PRK08208 37 EDALSLYIHI----PFCEMRCGFCNLFTRTGAD-AEFIDSYLDALIRQAEQVAEALAPARFASFAVGGGT-P-TLLNAAE 109 (430)
T ss_pred CCceEEEEEe----CCccCcCCCCCCccccCCc-cchHHHHHHHHHHHHHHHHHHcCCCceeEEEEcCCc-c-ccCCHHH
Confidence 4444444444 5699999999986542211 011112357777777655432 36677775553 3 3345566
Q ss_pred HHHHHHHHHh---c---C--cEeEEecCCCCHHHHHHHHHhCCCeEeccCCC-CHHHHhcccCCCCHHHHHHHHHHHHHc
Q psy8199 752 IENMICEVKK---I---G--LETCLTLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNV 822 (965)
Q Consensus 752 ~~~~~~~i~~---~---~--~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~~es-~~~~~~~i~~~~~~~~~~~~i~~~~~~ 822 (965)
+.++++.+++ . + +.+.+++..++++.++.|+++|++++++|+|| +++.++.+.+.++.++..++++.++++
T Consensus 110 l~~Ll~~i~~~~~~~~~~~eitiE~~P~~lt~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~R~~~~~~~~~ai~~l~~~ 189 (430)
T PRK08208 110 LEKLFDSVERVLGVDLGNIPKSVETSPATTTAEKLALLAARGVNRLSIGVQSFHDSELHALHRPQKRADVHQALEWIRAA 189 (430)
T ss_pred HHHHHHHHHHhCCCCCCCceEEEEeCcCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHhCCCCCHHHHHHHHHHHHHc
Confidence 6666666654 1 2 23456788899999999999999999999999 899999999999999999999999999
Q ss_pred CCc-eeeeEEEec-CCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCC
Q psy8199 823 GIN-ICCGGIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMP 894 (965)
Q Consensus 823 Gi~-v~~~~i~Gl-~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp 894 (965)
|+. ++..+|+|+ ++|.+++.++++.+.+++ ++.+.++++++.|||++......+.++..++...++..|.
T Consensus 190 g~~~i~~dlI~GlP~qt~e~~~~~l~~~~~l~--~~~is~y~L~~~~~T~l~~~~~~~~~~~~~m~~~~~~~L~ 261 (430)
T PRK08208 190 GFPILNIDLIYGIPGQTHASWMESLDQALVYR--PEELFLYPLYVRPLTGLGRRARAWDDQRLSLYRLARDLLL 261 (430)
T ss_pred CCCeEEEEeecCCCCCCHHHHHHHHHHHHhCC--CCEEEEccccccCCCccchhcCCCHHHHHHHHHHHHHHHH
Confidence 997 579999999 699999999999999999 9999999999999999998766677888888888888774
|
|
| >PLN02376 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.3e-16 Score=179.36 Aligned_cols=303 Identities=15% Similarity=0.132 Sum_probs=186.5
Q ss_pred CCCCcHHHHHHHHHHHhhcC----CCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCcccccccc
Q psy8199 292 SNLTHKPVIKLSEKLSSLTQ----YKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVT 367 (965)
Q Consensus 292 ~~~~~~~~~~la~~l~~~~~----~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~ 367 (965)
..+..+.+..+++.+.+..+ .++++|++|+|+++|++.++.+... +++.|++.+++|.++........
T Consensus 93 ~~G~~~LR~aiA~~l~~~~g~~v~v~pe~Ivit~Ga~~al~~l~~~l~~--------pGD~Vlv~~P~Y~~~~~~~~~~~ 164 (496)
T PLN02376 93 YHGLKKFRQAIAHFMGKARGGKVTFDPERVVMSGGATGANETIMFCLAD--------PGDVFLIPSPYYAAFDRDLRWRT 164 (496)
T ss_pred CCCcHHHHHHHHHHHHHHhCCCCcCChhhEEEccchHHHHHHHHHHhCC--------CCCEEEECCCCccchHHHHHhhC
Confidence 33456677778887776543 4678999999999999999987743 56889999999998843221111
Q ss_pred CCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHh---CCCcEE-EEEEccccccCCCcccCChH
Q psy8199 368 NIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKK---NHNKIA-AIIIEPLVQCAGGMIMYDSI 443 (965)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~---~~~~~a-aii~ep~v~~~~G~~~~~~~ 443 (965)
| ..++.+|........ .|+++++++++. .+.++. .++++| +|++|.+. +.+
T Consensus 165 G------------~~vv~v~~~~~~~~~----------~~~~~le~a~~~a~~~~~~~k~l~l~nP--~NPTG~~~-s~e 219 (496)
T PLN02376 165 G------------VEIIPVPCSSSDNFK----------LTVDAADWAYKKAQESNKKVKGLILTNP--SNPLGTML-DKD 219 (496)
T ss_pred C------------CEEEEEeCCCCccCc----------CCHHHHHHHHHHHHhcCCCeeEEEEcCC--CCCCCccC-CHH
Confidence 1 123333332110000 256666655432 123455 444555 99999876 778
Q ss_pred HHHHHHHHHHhcCCeEEEeccccCCCcccccc-cc-cc---cC---CCcce----eeeccccC-CCcccceeeeec-HHH
Q psy8199 444 YLKLVREICNNYNIHLIADEIAVGCGRTGKFF-AC-EH---AE---IWPDF----LCLSKGIT-GGYLPLSLVMTT-DKI 509 (965)
Q Consensus 444 ~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~-~~-~~---~~---~~pDi----vt~sK~l~-gG~~pig~v~~~-~~i 509 (965)
.+++|.++|++||+++|+||+|..+...+..+ +. +. ++ ..++. -+|||.++ .| +++|+++++ +.+
T Consensus 220 ~l~~L~~~a~~~~i~lI~DEiY~~~~f~~~~~~si~~l~~~~~~~~~~~~~v~vv~S~SK~~glpG-lRvG~li~~~~~l 298 (496)
T PLN02376 220 TLTNLVRFVTRKNIHLVVDEIYAATVFAGGDFVSVAEVVNDVDISEVNVDLIHIVYSLSKDMGLPG-FRVGIVYSFNDSV 298 (496)
T ss_pred HHHHHHHHHHHcCCEEEEEcCccccccCCCCcccHHHhhccccccccCCCeEEEEEeccccCCCCc-ceEEEEEECCHHH
Confidence 89999999999999999999999864444322 11 11 11 12342 26899886 45 899999984 556
Q ss_pred HHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccH--------HHHHHHHHHHHHHHHHcccCCCceeeeecee
Q psy8199 510 YNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNI--------LQRISQDMKKITKALTSLITHPKIINFRQKG 581 (965)
Q Consensus 510 ~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~--------~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~G 581 (965)
.+.+.. . ......+.+++.++.+.|+ +..+ .++++++.+.+.+.|++. ++..+.+.|
T Consensus 299 ~~~~~~-------~-~~~~~vs~~~Q~a~~~~L~---d~~~~~~~l~~~r~~l~~r~~~l~~~L~~~----gi~~~~~~a 363 (496)
T PLN02376 299 VSCARK-------M-SSFGLVSSQTQLMLASMLS---DDQFVDNFLMESSRRLGIRHKVFTTGIKKA----DIACLTSNA 363 (496)
T ss_pred HHHHHH-------H-hhcCCCCHHHHHHHHHHhC---ChhHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCcccCCCc
Confidence 555433 1 1112356778887777763 3222 233344444455555442 444455554
Q ss_pred -EEEEEEEeecCcc--chhhHHHHHHHHHHH-cCcEEeec-------CCEEEEeCCcc-cCHHHHHHHHHhhhcccc
Q psy8199 582 -MIWAFDVIIEDPE--QIETFSKKFFVAALK-NELLLRPI-------GNTVYLMPPYI-LNKNEIQHMTSAIFQTFN 646 (965)
Q Consensus 582 -~~~~i~~~~~~~~--~~~~~~~~~~~~l~~-~Gi~~~~~-------~~~lR~~p~~~-~t~~~i~~~~~~l~~~~~ 646 (965)
+++++++. .... .......++++.+.+ .||.+.|+ .+++|++ +. .+++.+++.++++.+.+.
T Consensus 364 G~flwi~l~-~~~~~~~~~~~e~~l~~~ll~~~gV~v~pGs~F~~~~~g~~Ri~--fa~~~~~~l~~al~rl~~~l~ 437 (496)
T PLN02376 364 GLFAWMDLR-HLLRDRNSFESEIELWHIIIDKVKLNVSPGSSFRCTEPGWFRIC--FANMDDDTLHVALGRIQDFVS 437 (496)
T ss_pred eEEEEEEch-hhhccCCchhHHHHHHHHHHHcCCEEEeCccccCCCCCCEEEEE--eeCCCHHHHHHHHHHHHHHHH
Confidence 77777764 1100 001112356677765 59999884 2689999 55 577888888888876543
|
|
| >PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.2e-15 Score=174.17 Aligned_cols=333 Identities=12% Similarity=0.115 Sum_probs=197.0
Q ss_pred HHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEc
Q psy8199 274 YINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQ 353 (965)
Q Consensus 274 ~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~ 353 (965)
.+.+++.+++..... ....++...+|.+.++++++ .+++++++||++|+..++.+..+ +++ |+..+
T Consensus 58 a~~~a~~~a~~~g~~---~Y~~~~g~~~Lreaia~~~~--~~~vv~t~ggt~A~~~~~~all~--------pGD-Vii~~ 123 (460)
T PRK13238 58 AMSDRQWAAMMRGDE---AYAGSRSYYRLEDAVKDIFG--YPYTIPTHQGRAAEQILFPVLIK--------KGD-VVPSN 123 (460)
T ss_pred hhhHHHHHHHHhCCc---ccCCCCCHHHHHHHHHHHhC--CCcEEECCCHHHHHHHHHHHhCC--------CCC-EEccC
Confidence 477777777755321 12334556788888888884 57899999999999999876633 445 88888
Q ss_pred CCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHH-HHHHHHHHHHHHhCC-CcEEEEEEcccc
Q psy8199 354 NSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIA-RCAIFDLEILLKKNH-NKIAAIIIEPLV 431 (965)
Q Consensus 354 ~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~~le~~l~~~~-~~~aaii~ep~v 431 (965)
+.|..+.......++ ..+.++...... + ...+.+. ..|+++|++++.+.+ +++++|+++. +
T Consensus 124 p~~~~~~~~i~~~G~-------------~~v~v~~~~~~~-~--~~~~~f~g~id~e~Le~~i~~~~~~~tk~Ivl~~-p 186 (460)
T PRK13238 124 YHFDTTRAHIELNGA-------------TAVDLVIDEALD-T--GSRHPFKGNFDLEKLEALIEEVGAENVPFIVMTI-T 186 (460)
T ss_pred CcccchHHHHHHcCC-------------EEEEEecccccc-c--cccccccCCcCHHHHHHHHhhcCCCceeEEEEec-C
Confidence 877665333322222 122333221000 0 0000111 147899999997543 4688888887 7
Q ss_pred ccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccC----CCcc---cccc-ccc-c---cCCCcceeeeccccCCCccc
Q psy8199 432 QCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVG----CGRT---GKFF-ACE-H---AEIWPDFLCLSKGITGGYLP 499 (965)
Q Consensus 432 ~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg----~gr~---G~~~-~~~-~---~~~~pDivt~sK~l~gG~~p 499 (965)
+|++|..+.+.+.+++|+++|++||+++|+|+++.. |+.. |... ... . .+--.|.+++| +.-.|+.|
T Consensus 187 ~NptGG~v~s~~~l~~I~~ia~~~gi~li~Daa~~~e~a~f~~~~e~g~~~~si~~i~~~~~s~~D~~~~S-g~K~g~~~ 265 (460)
T PRK13238 187 NNSAGGQPVSMANLRAVYEIAKKYGIPVVIDAARFAENAYFIKQREPGYKDKSIKEIAREMFSYADGLTMS-AKKDAMVN 265 (460)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECcchhhhhhhhhhccccccCCCHHHHhhhhcccCcEEEEe-cccCCCCc
Confidence 888876667899999999999999999999997742 1100 0000 000 0 01125777776 22112235
Q ss_pred ceeeee-c-HHHHHhhhccCCccccccc-CCCCCCHHHHHHHHH-HHHHHhcccHHHHHHHHHHHHHHHHHcccCCCcee
Q psy8199 500 LSLVMT-T-DKIYNSIYYKNNINIFLHS-HSYSGNPLACCAALA-TLEIFNKDNILQRISQDMKKITKALTSLITHPKII 575 (965)
Q Consensus 500 ig~v~~-~-~~i~~~~~~~~~~~~~~~~-~t~~~~~~~~aaa~a-~L~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~i~ 575 (965)
.|.+++ + +++++.+.. ...+.++ .||++++..+.+|++ +|+...+++..+...++.++|.+.|++. ++.
T Consensus 266 ~GG~i~~~d~~l~~~~~~---~~~~~~g~~t~~g~~~~~~~Ala~~l~e~~~~~~~~~~~~~~~~l~~~L~~~----G~~ 338 (460)
T PRK13238 266 IGGLLCFRDEDLFTECRT---LCILYEGFPTYGGLAGRDMEALAVGLYEGMDEDYLAYRIGQVEYLGEGLEEA----GVP 338 (460)
T ss_pred ceeEEEcChHHHHHHhhh---cccccCCcccccCcHHHHHHHHHhhHHHhhChHHHHHHHHHHHHHHHHHHHC----CCC
Confidence 555444 5 577776654 1112233 388887777444444 5654334455555555678899888774 455
Q ss_pred eeeceeEEEEEEEeecC-cc-chhhH-HHHHHHH-HHHcCcEEeecC------------------CEEEEeCCc-ccCHH
Q psy8199 576 NFRQKGMIWAFDVIIED-PE-QIETF-SKKFFVA-ALKNELLLRPIG------------------NTVYLMPPY-ILNKN 632 (965)
Q Consensus 576 ~v~g~G~~~~i~~~~~~-~~-~~~~~-~~~~~~~-l~~~Gi~~~~~~------------------~~lR~~p~~-~~t~~ 632 (965)
.+.+.|.++.+.-...- +. +...+ ...++.. +.+.||.+.|.+ +.+||..|. ..+.+
T Consensus 339 ~~~p~Gg~~v~~d~~~~~~~~~~~~~~~~~~a~~L~~e~GV~~~~~~~f~~~~~~~~~~~~~~~~~~~Rla~~rr~~~~~ 418 (460)
T PRK13238 339 IQTPAGGHAVFVDAGKFLPHIPAEQFPAQALACELYLEAGIRGVEIGSLLLGRDPKTGEQLPAPAELLRLAIPRRVYTQS 418 (460)
T ss_pred eEccCCceEEEEEchhcCCCCCCCCCchHHHHHHHHHHcCeeeecccceecccCCCCccccCCccceEEEecccccCCHH
Confidence 55566655543322110 00 00111 2345444 458899886522 579999775 45888
Q ss_pred HHHHHHHhhhccc
Q psy8199 633 EIQHMTSAIFQTF 645 (965)
Q Consensus 633 ~i~~~~~~l~~~~ 645 (965)
+++.+.+++....
T Consensus 419 ~~~~~~~~l~~~~ 431 (460)
T PRK13238 419 HMDYVAEALKAVK 431 (460)
T ss_pred HHHHHHHHHHHHH
Confidence 9998888877654
|
|
| >PRK04635 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.4e-16 Score=178.58 Aligned_cols=283 Identities=12% Similarity=0.132 Sum_probs=181.9
Q ss_pred CCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCcc
Q psy8199 294 LTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFK 373 (965)
Q Consensus 294 ~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~ 373 (965)
|+.....+|.+.+++.++...++|++++|+++++..++++... ++++.|++.+++|..+...+...+
T Consensus 57 Yp~~~~~~Lr~aia~~~~~~~~~I~it~Gs~~~i~~~~~~~~~-------~g~d~vlv~~P~y~~y~~~~~~~g------ 123 (354)
T PRK04635 57 YPECQPPELINAYSAYAGVAPEQILTSRGADEAIELLIRAFCE-------PGQDSIACFGPTYGMYAISAETFN------ 123 (354)
T ss_pred CCCCCHHHHHHHHHHHhCcCHHHEEEeCCHHHHHHHHHHHhcC-------CCCCeEEEcCCChHHHHHHHHHcC------
Confidence 3333456788888888887888999999999999999886643 344789999999977643222211
Q ss_pred chhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHH
Q psy8199 374 EIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICN 453 (965)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~ 453 (965)
..+..+|...... .|++.+++ + ......++++| +|++|.+.+ .+.+++|.+.|+
T Consensus 124 -------~~v~~v~~~~~~~------------~~~~~l~~-~---~~~~li~i~nP--~NPTG~~~~-~~~l~~l~~~~~ 177 (354)
T PRK04635 124 -------VGVKALPLTADYQ------------LPLDYIEQ-L---DGAKLVFICNP--NNPTGTVID-RADIEQLIEMTP 177 (354)
T ss_pred -------CEEEEEecCCCCC------------CCHHHHHh-c---cCCCEEEEeCC--CCCCCccCC-HHHHHHHHHhCC
Confidence 1334444322111 14455542 2 12223445555 999998874 555666666655
Q ss_pred hcCCeEEEeccccCCCcccccccccccCCCccee---eeccccC-CCcccceeeeecHHHHHhhhccCCcccccccCCCC
Q psy8199 454 NYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL---CLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYS 529 (965)
Q Consensus 454 ~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDiv---t~sK~l~-gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~ 529 (965)
++++|+||+|..|... . .........++++ +|||.++ .| +++|++++++++++.+.. ....++
T Consensus 178 --~~~vivDeay~~~~~~-~-s~~~~~~~~~~~iv~~S~SK~~~l~G-lRlG~~i~~~~~~~~l~~--------~~~~~~ 244 (354)
T PRK04635 178 --DAIVVVDEAYIEFCPE-Y-SVADLLASYPNLVVLRTLSKAFALAG-ARCGFTLANEELIEILMR--------VIAPYP 244 (354)
T ss_pred --CcEEEEeCchHhhccC-c-chHHHHhhCCCEEEEechHHHhhhhH-HHHhhhhCCHHHHHHHHh--------hcCCCC
Confidence 5999999999877421 1 1111112234544 6899876 45 899999999999988764 112455
Q ss_pred CCHHHHHHHHHHHHHHhc---ccHHHHHHHHHHHHHHHHHcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHH
Q psy8199 530 GNPLACCAALATLEIFNK---DNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVA 606 (965)
Q Consensus 530 ~~~~~~aaa~a~L~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~ 606 (965)
.+.+++.++.++|+.... ....+.++++++++.+.|+++ +++...++.|.|+.+.+. + ...+.+.
T Consensus 245 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~---~~~~~~~~~g~f~~~~~~--~-------~~~~~~~ 312 (354)
T PRK04635 245 VPLPVSEIATQALSEAGLARMKFQVLDLNAQGARLQAALSMY---GGAKVLEGNGNYVLAKFD--D-------VDAVFKA 312 (354)
T ss_pred CCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhC---CCceECCCCCcEEEEECC--C-------HHHHHHH
Confidence 677777777777742111 112344555566666766654 434445667887776653 2 2356778
Q ss_pred HHHcCcEEeec-----CCEEEEeCCcccCHHHHHHHHHhhhc
Q psy8199 607 ALKNELLLRPI-----GNTVYLMPPYILNKNEIQHMTSAIFQ 643 (965)
Q Consensus 607 l~~~Gi~~~~~-----~~~lR~~p~~~~t~~~i~~~~~~l~~ 643 (965)
|.++||.++.. ++++|++ ..+.++++.+++++++
T Consensus 313 l~~~gv~v~~~~~~~~~~~lRis---~~~~e~~~~l~~al~~ 351 (354)
T PRK04635 313 LWDAGIVARAYKDPRLANCIRFS---FSNRAETDKLIGLIRN 351 (354)
T ss_pred HHHCCEEEEECCCCCCCCeEEEE---eCCHHHHHHHHHHHHH
Confidence 88999999754 2689999 4578999999988754
|
|
| >COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.8e-17 Score=177.14 Aligned_cols=191 Identities=13% Similarity=0.215 Sum_probs=154.6
Q ss_pred eEeEeeccCCCCCCCCCCCCCCcCCCCcccccCCCHHHHHHHHHHHHHCCCCEEEEeeccCCCCccc----HHHHHHHHH
Q psy8199 682 AVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRD----LDNIENMIC 757 (965)
Q Consensus 682 ~~~i~~~s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~----~~~~~~~~~ 757 (965)
.+.+.+ +.||+++|+||..+.. ++ +.+.+++++|+++++.+.+.|+++|.|+|.+..-...+ ...+.++++
T Consensus 145 ~A~v~I-~eGCn~~CtfCiiP~~--RG--~~rSr~~e~Il~ev~~Lv~~G~kEI~L~gqdv~aYG~D~~~~~~~l~~Ll~ 219 (437)
T COG0621 145 RAFVKI-QEGCNKFCTFCIIPYA--RG--KERSRPPEDILKEVKRLVAQGVKEIVLTGQDVNAYGKDLGGGKPNLADLLR 219 (437)
T ss_pred EEEEEh-hcCcCCCCCeeeeecc--CC--CccCCCHHHHHHHHHHHHHCCCeEEEEEEEehhhccccCCCCccCHHHHHH
Confidence 466777 9999999999987753 22 23457899999999999999999999998543211112 234666666
Q ss_pred HHHh-cC---cEe-EEecCCCCHHHHHHHHHhC--CCeEeccCCC-CHHHHhcccCCCCHHHHHHHHHHHHH--cCCcee
Q psy8199 758 EVKK-IG---LET-CLTLGMLNENQAYRLKKVG--LDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRN--VGINIC 827 (965)
Q Consensus 758 ~i~~-~~---~~i-~~~~~~~~~e~l~~Lk~aG--~~~i~i~~es-~~~~~~~i~~~~~~~~~~~~i~~~~~--~Gi~v~ 827 (965)
.+.+ .| +.+ +.++..++++.++.+++.. +.++++.+|| |+++++.|+++++.+++++.++.+++ -.+.++
T Consensus 220 ~l~~I~G~~riR~~~~~P~~~~d~lI~~~~~~~kv~~~lHlPvQsGsd~ILk~M~R~yt~e~~~~~i~k~R~~~Pd~~i~ 299 (437)
T COG0621 220 ELSKIPGIERIRFGSSHPLEFTDDLIEAIAETPKVCPHLHLPVQSGSDRILKRMKRGYTVEEYLEIIEKLRAARPDIAIS 299 (437)
T ss_pred HHhcCCCceEEEEecCCchhcCHHHHHHHhcCCcccccccCccccCCHHHHHHhCCCcCHHHHHHHHHHHHHhCCCceEe
Confidence 6655 23 233 3367788999999999952 6889999999 99999999999999999999999987 457889
Q ss_pred eeEEEec-CCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCCC-CCCCH
Q psy8199 828 CGGIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGS-SILDP 879 (965)
Q Consensus 828 ~~~i~Gl-~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~~-~~~~~ 879 (965)
+.+|+|+ |||+||+.++++++++.+ ++.+.++.|-|.||||-+.. .+.+.
T Consensus 300 tDiIVGFPgETeedFe~tl~lv~e~~--fd~~~~F~YSpRpGTpAa~~~~qvp~ 351 (437)
T COG0621 300 TDIIVGFPGETEEDFEETLDLVEEVR--FDRLHVFKYSPRPGTPAALMPDQVPE 351 (437)
T ss_pred ccEEEECCCCCHHHHHHHHHHHHHhC--CCEEeeeecCCCCCCccccCCCCCCH
Confidence 9999999 799999999999999999 99999999999999998854 34444
|
|
| >COG1242 Predicted Fe-S oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.4e-16 Score=154.22 Aligned_cols=220 Identities=20% Similarity=0.285 Sum_probs=171.2
Q ss_pred HHHHHhcCCCeEEEeEeEeeccCCCCCC--------CCCCCCCCcCCCCcccccCCCH-HHHHHHHHHHHHC---CCCEE
Q psy8199 668 KVHRKYFDANEIELAVLLSIKTGGCTED--------CGYCPQSTHYNTEITATKILSI-ESVITAAQKAKSD---GATRF 735 (965)
Q Consensus 668 ~~~~~~~~g~~~~~~~~i~~~s~~C~~~--------C~fC~~~~~~~~~~~~~~~~~~-eei~~~~~~~~~~---g~~~i 735 (965)
.--|++| |.+++-.++- . .-.|||+ |.||+..... ....-+..+. +++.+.+..+.+. +-.-+
T Consensus 13 ~~lr~~f-g~Kv~Kv~ld-~-GF~CPNRDGti~rGGCtFC~~~g~~--d~~~~~~~~i~~Q~~~q~~~~~kK~~~~kyia 87 (312)
T COG1242 13 DYLREKF-GEKVFKVTLD-G-GFSCPNRDGTIGRGGCTFCSVAGSG--DFAGQPKISIAEQFKEQAERMHKKWKRGKYIA 87 (312)
T ss_pred HHHHHHh-CCeeEEEecc-C-CCCCCCCCCcccCCceeeecCCCCC--ccccCcccCHHHHHHHHHHHHHHhhcCCcEEE
Confidence 3336677 7777755433 3 6889985 9999766431 1111222344 4555555544433 33334
Q ss_pred EEeeccCCCCcccHHHHHHHHHHHHh----cCcEeEEecCCCCHHHHHHHHHhCCC---eEeccCCC-CHHHHhcccCCC
Q psy8199 736 CMGAAWRELKDRDLDNIENMICEVKK----IGLETCLTLGMLNENQAYRLKKVGLD---YYNHNLDT-SPKLYGDIISTR 807 (965)
Q Consensus 736 ~l~~g~~~~~~~~~~~~~~~~~~i~~----~~~~i~~~~~~~~~e~l~~Lk~aG~~---~i~i~~es-~~~~~~~i~~~~ 807 (965)
.|+.. +....+.+.+.+.....-. .|+.|.++++.+.+++++.|.+.--. .+.+|+|| ++++.+.|++.|
T Consensus 88 YFQ~~--TNTyApvevLre~ye~aL~~~~VVGLsIgTRPDClpd~VldlL~e~~~r~~vWvELGLQT~h~~Tlk~iNRgH 165 (312)
T COG1242 88 YFQAY--TNTYAPVEVLREMYEQALSEAGVVGLSIGTRPDCLPDDVLDLLAEYNKRYEVWVELGLQTAHDKTLKRINRGH 165 (312)
T ss_pred EEecc--ccccCcHHHHHHHHHHHhCcCCeeEEeecCCCCCCcHHHHHHHHHHhhheEEEEEeccchhhHHHHHHHhccc
Confidence 55555 4446778888888876653 57888999999999999999887432 45789999 999999999999
Q ss_pred CHHHHHHHHHHHHHcCCceeeeEEEec-CCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCC------CCCCCHH
Q psy8199 808 DYENRLNTLKNVRNVGINICCGGIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYG------SSILDPL 880 (965)
Q Consensus 808 ~~~~~~~~i~~~~~~Gi~v~~~~i~Gl-~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~------~~~~~~~ 880 (965)
+++.+.++++.+++.||+|++|+|+|| ||+.+++.++++.+..++ ++-|.+.++...+||||++ ....+.+
T Consensus 166 d~~~y~dav~r~rkrgIkvc~HiI~GLPgE~~~~mleTak~v~~~~--v~GIKlH~LhvvkgT~m~k~Y~~G~l~~ls~e 243 (312)
T COG1242 166 DFACYVDAVKRLRKRGIKVCTHLINGLPGETRDEMLETAKIVAELG--VDGIKLHPLHVVKGTPMEKMYEKGRLKFLSLE 243 (312)
T ss_pred chHHHHHHHHHHHHcCCeEEEEEeeCCCCCCHHHHHHHHHHHHhcC--CceEEEEEEEEecCChHHHHHHcCCceeccHH
Confidence 999999999999999999999999999 699999999999999999 9999999999999999984 4678999
Q ss_pred HHHHHHHHHHHHCCCC
Q psy8199 881 EFIRTIAVARITMPTS 896 (965)
Q Consensus 881 ~~~~~ia~~R~~lp~~ 896 (965)
++.++++-+-..+|+-
T Consensus 244 eYv~~~~d~le~lpp~ 259 (312)
T COG1242 244 EYVELVCDQLEHLPPE 259 (312)
T ss_pred HHHHHHHHHHHhCCcc
Confidence 9999998887777654
|
|
| >TIGR01211 ELP3 histone acetyltransferase, ELP3 family | Back alignment and domain information |
|---|
Probab=99.72 E-value=9.1e-16 Score=174.23 Aligned_cols=213 Identities=18% Similarity=0.268 Sum_probs=168.8
Q ss_pred EEEeEeEeeccCCCC-CCCCCCCCC-------CcCCCC-c-----ccccCCCHHHHHHHHHHHHHCC--CC--EEEEeec
Q psy8199 679 IELAVLLSIKTGGCT-EDCGYCPQS-------THYNTE-I-----TATKILSIESVITAAQKAKSDG--AT--RFCMGAA 740 (965)
Q Consensus 679 ~~~~~~i~~~s~~C~-~~C~fC~~~-------~~~~~~-~-----~~~~~~~~eei~~~~~~~~~~g--~~--~i~l~~g 740 (965)
|.+.++|.- --.|| .+|.||.-. ..|-.. . .+++.-+.+|+...++++...| .+ ++.|.||
T Consensus 66 v~~v~vm~~-p~~cph~~c~~cp~~~~~~~~~~sy~~~ep~~~ra~~~~~dpy~q~~~rl~~l~~~g~~~~kvE~i~~GG 144 (522)
T TIGR01211 66 VAVVAVMTS-PHRCPHGKCLYCPGGPDSENSPQSYTGYEPAAMRGRQNDYDPYEQVTARLEQLEQIGHPVDKVELIIMGG 144 (522)
T ss_pred eEEEEEecC-CccCCCCceEeCCCCCCcCCCCcccCCCCcHhHHHHHcCCCcHHHHHHHHHHHHHhCCCCceEEEEEECC
Confidence 444555543 46799 579999641 111110 0 1334457899999999999876 33 3366666
Q ss_pred cCCCCcccHHHHHHHHHHHHh-----------------------------cCcEeEEecCCCCHHHHHHHHHhCCCeEec
Q psy8199 741 WRELKDRDLDNIENMICEVKK-----------------------------IGLETCLTLGMLNENQAYRLKKVGLDYYNH 791 (965)
Q Consensus 741 ~~~~~~~~~~~~~~~~~~i~~-----------------------------~~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i 791 (965)
.+ ...+.++...+++.+.+ .++.+.+++..++++.++.|+++|++++.+
T Consensus 145 Tf--t~l~~~y~~~fl~~~~~a~~~~~~~~~~~~~~~~~~~~ne~a~~~~vgitiEtRPD~i~~e~L~~L~~~G~~rVsl 222 (522)
T TIGR01211 145 TF--PARDLDYQEWFIKRCLNAMNGFDQELKGNSTLEEAIRINETSKHRCVGLTIETRPDYCREEHIDRMLKLGATRVEL 222 (522)
T ss_pred Cc--ccCCHHHHHHHHHHHHHHhccccccccccchHHHHHHhhhcccCCeEEEEEEEcCCcCCHHHHHHHHHcCCCEEEE
Confidence 44 34555555555554432 234456788999999999999999999999
Q ss_pred cCCC-CHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEec-CCCHHHHHHHHHHHHh---cCCCCCceeecccccc
Q psy8199 792 NLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL-SESRDQRAELIFQLAN---LNPYPESVPINNLVQI 866 (965)
Q Consensus 792 ~~es-~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl-~et~ed~~~~l~~l~~---l~~~~~~i~~~~~~P~ 866 (965)
|+|| ++++++.++++++.++..++++.++++|+.++.++|+|+ |+|.++..++++.+.+ ++ ++.+.++++.+.
T Consensus 223 GVQS~~d~VL~~inRght~~~v~~Ai~~lr~~G~~v~~~LM~GLPgqt~e~~~~t~~~l~~~~~l~--pD~Ikiypl~V~ 300 (522)
T TIGR01211 223 GVQTIYNDILERTKRGHTVRDVVEATRLLRDAGLKVVYHIMPGLPGSSFERDLEMFREIFEDPRFK--PDMLKIYPTLVT 300 (522)
T ss_pred ECccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeEEEEeecCCCCCCHHHHHHHHHHHHhccCCC--cCEEEEecceee
Confidence 9999 999999999999999999999999999999999999999 6999999999999985 88 999999999999
Q ss_pred CCCCCCC------CCCCCHHHHHHHHHHHHHHCCCC
Q psy8199 867 KGTPLYG------SSILDPLEFIRTIAVARITMPTS 896 (965)
Q Consensus 867 ~gT~l~~------~~~~~~~~~~~~ia~~R~~lp~~ 896 (965)
+||+|++ ..+++.++++++++.+...+|++
T Consensus 301 ~gT~L~~~~~~G~y~p~t~ee~v~l~~~~~~~lp~~ 336 (522)
T TIGR01211 301 RGTELYELWKRGEYKPYTTEEAVELIVEIKRMMPKW 336 (522)
T ss_pred CCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCcc
Confidence 9999984 57789999999999999999965
|
The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases. |
| >TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.6e-15 Score=172.91 Aligned_cols=338 Identities=11% Similarity=-0.007 Sum_probs=195.7
Q ss_pred CCcccccccccchhccCCCCCHHHHHHHHHHHhhcc------ccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhH
Q psy8199 252 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLE------HVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGAS 325 (965)
Q Consensus 252 dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~------~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGse 325 (965)
.|..++|+..|.. .++ .+|.+.+++.+.+.+.. .|....+..+.+..+++.+.+. ....+++++|+|+++
T Consensus 31 ~~~~~i~l~~~~~--~~~-~~~~v~~~~~~~~~~~~~~~~~~~Y~p~~g~~~lr~aia~~~~~~-~~~~d~I~it~Ga~~ 106 (402)
T TIGR03542 31 PSADIIRLGIGDT--TQP-LPASVIEAFHNAVDELASEETFRGYGPEQGYPFLREAIAENDYRG-RIDPEEIFISDGAKC 106 (402)
T ss_pred CCCCeEEcCCCCC--CCC-CCHHHHHHHHHHHhcccccccccCCCCCCCCHHHHHHHHHHHHhc-CCCHHHEEECCCcHH
Confidence 4678899887743 333 37888999988776531 1222223344445555543221 346789999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHH
Q psy8199 326 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIAR 405 (965)
Q Consensus 326 A~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (965)
|+...+.+. .++++|++.+++|.++.......+. +..... .........+|.......
T Consensus 107 al~~l~~l~---------~~gd~Vlv~~P~y~~~~~~~~~~g~-~~~~~~-~~~~~~~~~v~~~~~~~~----------- 164 (402)
T TIGR03542 107 DVFRLQSLF---------GSDNTVAVQDPVYPAYVDSNVMAGR-AGVLDD-DGRYSKITYLPCTKENNF----------- 164 (402)
T ss_pred HHHHHHHhc---------CCCCEEEEeCCCCcchHHHHHHcCC-cccccc-ccccceEEEeecchhhCC-----------
Confidence 998754322 2567899999999988544433332 111000 000002223332110000
Q ss_pred HHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccc-cccc-cccCCC
Q psy8199 406 CAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK-FFAC-EHAEIW 483 (965)
Q Consensus 406 ~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~-~~~~-~~~~~~ 483 (965)
+. ++++ .....+.++++| +|++|.+. +.+.+++|.++|++||+++|.||+|..|...+. .... ..-+..
T Consensus 165 -~~-~~~~----~~~~~~i~l~nP--~NPTG~~~-s~~~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~ 235 (402)
T TIGR03542 165 -IP-DLPE----EPKIDIIYLCSP--NNPTGTVL-TKEQLKELVDYANEHGSLILFDAAYSAFISDPSLPHSIFEIPGAK 235 (402)
T ss_pred -CC-Cccc----cCCceEEEEeCC--CCCCCccC-CHHHHHHHHHHHHHcCeEEEEEchhhhhccCCCCCcchhhCCCCc
Confidence 00 1111 112234445555 99999866 777899999999999999999999998743322 1111 111111
Q ss_pred ccee---eeccccC-CCcccceeeeecHHHH--------HhhhccCCcccccccCCC-CCCHHHHHHHHHHHHHHh---c
Q psy8199 484 PDFL---CLSKGIT-GGYLPLSLVMTTDKIY--------NSIYYKNNINIFLHSHSY-SGNPLACCAALATLEIFN---K 547 (965)
Q Consensus 484 pDiv---t~sK~l~-gG~~pig~v~~~~~i~--------~~~~~~~~~~~~~~~~t~-~~~~~~~aaa~a~L~~~~---~ 547 (965)
..++ +|||.++ .| +++|+++++++++ ..+.. ....++ +.+++++.++.+.|+--. -
T Consensus 236 ~~vi~~~SfSK~~g~pG-lRiG~~i~~~~l~~~~~~~~~~~~~~-------~~~~~~~~~s~~~q~~~~~~l~~~~~~~~ 307 (402)
T TIGR03542 236 ECAIEFRSFSKTAGFTG-VRLGWTVVPKELTYADGHSVIQDWER-------RQCTKFNGASYPVQRAAEAAYAGEGLQPI 307 (402)
T ss_pred ccEEEEecCccccCCCC-cceEEEEecHHHhhcchhhHHHHHHH-------HhhhcccCCCHHHHHHHHHHHcCcchhHH
Confidence 1233 7899886 45 8999999998876 22211 111223 357788887777764210 0
Q ss_pred ccHHHHHHHHHHHHHHHHHcccCCCceeeeece-eEEEEEEEeecCccchhhHHHHHHHHHH-HcCcEEeec-------C
Q psy8199 548 DNILQRISQDMKKITKALTSLITHPKIINFRQK-GMIWAFDVIIEDPEQIETFSKKFFVAAL-KNELLLRPI-------G 618 (965)
Q Consensus 548 ~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~-G~~~~i~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~-------~ 618 (965)
....+.++++.+++.+.|+.. ++....+. |.++.+.+. +.. ...++.+.+. +.||.+.|+ .
T Consensus 308 ~~~~~~~~~~~~~~~~~L~~~----~~~~~~~~~~~f~~v~l~--~~~----~~~~l~~~l~~~~gv~v~pg~~f~~~~~ 377 (402)
T TIGR03542 308 LEAISYYMENARILRKALEAA----GFKVYGGEHAPYLWVKTP--EGI----SSWDFFDFLLYQYHVVGTPGSGFGPSGE 377 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHhc----CceecCCCceeEEEEECC--CCC----CHHHHHHHHHHhCCEEEeCchhhCCCCC
Confidence 112344455556666666543 33333444 567777664 110 1235667766 579999874 2
Q ss_pred CEEEEeCCcccCHHHHHHHHHhhhcc
Q psy8199 619 NTVYLMPPYILNKNEIQHMTSAIFQT 644 (965)
Q Consensus 619 ~~lR~~p~~~~t~~~i~~~~~~l~~~ 644 (965)
+++|++ +..+++++.++++++.++
T Consensus 378 ~~iRis--~~~~~~~l~~~l~~l~~~ 401 (402)
T TIGR03542 378 GFVRFS--AFGKRENIVEACERIKEA 401 (402)
T ss_pred CEEEEE--ecCCHHHHHHHHHHHHhh
Confidence 689999 556889999998887653
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). |
| >TIGR01979 sufS cysteine desulfurases, SufS subfamily | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.6e-15 Score=171.86 Aligned_cols=335 Identities=11% Similarity=0.085 Sum_probs=207.9
Q ss_pred cccccccccchhccCCCCCHHHHHHHHHHHhhccccccCC--C----CcHHHHHHHHHHHhhcCCC-CCeEEEcCChhHH
Q psy8199 254 KRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSN--L----THKPVIKLSEKLSSLTQYK-LGHCFYGSDGASA 326 (965)
Q Consensus 254 ~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~--~----~~~~~~~la~~l~~~~~~~-~~~v~~~~sGseA 326 (965)
..|||..+. |-.++.+++|+.+.+.........+ . ..+...++.+.++++++.. .++++|++|+++|
T Consensus 19 ~~yld~~~~------~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~~~~~~~~v~~~~g~t~~ 92 (403)
T TIGR01979 19 LVYLDSAAT------SQKPQQVIDAVAEYYRNSNANVHRGIHTLSVRATEAYEAVREKVAKFINAASDEEIVFTRGTTES 92 (403)
T ss_pred eEEEeCccc------cCCCHHHHHHHHHHHHhCCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCcCCCCeEEEeCCHHHH
Confidence 478987653 3357889999987765431111011 0 1234567778899988765 5689999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHH
Q psy8199 327 VEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARC 406 (965)
Q Consensus 327 ~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (965)
+..++..+... ...++++|++.+..|++........ ..........++...... .
T Consensus 93 l~~~~~~~~~~----~~~~g~~vl~~~~~~~s~~~~~~~~---------~~~~g~~~~~v~~~~~~~------------~ 147 (403)
T TIGR01979 93 INLVAYSWGDS----NLKAGDEIVISEMEHHANIVPWQLL---------AERTGATLKFIPLDDDGT------------L 147 (403)
T ss_pred HHHHHHHhhhh----cCCCCCEEEECcchhhHHHHHHHHH---------HHhcCcEEEEEecCCCCC------------C
Confidence 98888754210 0034677888877766532110000 000111334444332111 2
Q ss_pred HHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcce
Q psy8199 407 AIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDF 486 (965)
Q Consensus 407 d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDi 486 (965)
|++++++.+. +++.+|++.. +++++|.+.+ +++|.++|++||+++|+|++|. +|.. ........+|+
T Consensus 148 ~~~~l~~~i~---~~~~lv~~~~-~~~~tG~~~~----~~~i~~~~~~~~~~~ivD~a~~-~g~~----~~~~~~~~~d~ 214 (403)
T TIGR01979 148 DLDDLEKLLT---EKTKLVAITH-VSNVLGTVNP----VEEIAKLAHQVGAKVLVDGAQA-VPHM----PVDVQALDCDF 214 (403)
T ss_pred CHHHHHHHhc---cCCeEEEEEc-ccccccccCC----HHHHHHHHHHcCCEEEEEchhh-cCcc----ccCccccCCCE
Confidence 5788888875 3466666666 6899999887 8999999999999999999985 4321 11222335788
Q ss_pred ee--eccccCCCcccceeeeecHHHHHhhhcc---CCc-cccc----------cc-CCCCCCHHHHHHHHHHHHHHhc--
Q psy8199 487 LC--LSKGITGGYLPLSLVMTTDKIYNSIYYK---NNI-NIFL----------HS-HSYSGNPLACCAALATLEIFNK-- 547 (965)
Q Consensus 487 vt--~sK~l~gG~~pig~v~~~~~i~~~~~~~---~~~-~~~~----------~~-~t~~~~~~~~aaa~a~L~~~~~-- 547 (965)
++ ++|.++ . ..+|++++++++++.+..- +.. .... .. ..-+.+..+++++.++++.+.+
T Consensus 215 ~~~s~~K~~g-p-~G~g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~~~~g 292 (403)
T TIGR01979 215 YVFSGHKMYG-P-TGIGVLYGKEELLEQMPPFLGGGEMIAEVSFEETTYNEAPHKFEAGTPNIAGVIGLGAAIDYLEAIG 292 (403)
T ss_pred EEEecccccC-C-CCceEEEEchHHHhcCCCeecCCCceeecccCccccCCChhhcCCCCccHHHHHHHHHHHHHHHHhC
Confidence 75 469653 2 3578898998887765320 000 0000 00 0012355567777788877654
Q ss_pred -ccHHHHHHHHHHHHHHHHHcccCCCceeeee-----ceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec----
Q psy8199 548 -DNILQRISQDMKKITKALTSLITHPKIINFR-----QKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI---- 617 (965)
Q Consensus 548 -~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~-----g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~---- 617 (965)
+.+.++..++.+++.+.|+++ +++..+. ..+.++.+.+. . . ....+.+.|.++||.++++
T Consensus 293 ~~~~~~~~~~l~~~l~~~l~~~---~g~~~~~~~~~~~~~~~v~~~~~--~----~-~~~~~~~~L~~~gI~v~~g~~~~ 362 (403)
T TIGR01979 293 LENIEAHEHELTAYALERLGEI---PGLRIYGPRDAEDRGGIISFNVE--G----V-HPHDVGTILDEEGIAVRSGHHCA 362 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC---CCEEEeCCCCccccCceEEEEeC--C----c-CHHHHHHHHhhCCEEEcchhhhh
Confidence 345677777777777777654 3443222 23667777664 1 0 1235677888999998742
Q ss_pred ---------CCEEEEeCCcccCHHHHHHHHHhhhcc
Q psy8199 618 ---------GNTVYLMPPYILNKNEIQHMTSAIFQT 644 (965)
Q Consensus 618 ---------~~~lR~~p~~~~t~~~i~~~~~~l~~~ 644 (965)
++++|++++...++++++++++.+.+.
T Consensus 363 ~~~~~~~~~~~~iRiS~~~~~t~~di~~l~~~l~~~ 398 (403)
T TIGR01979 363 QPLMRRFGVPATCRASFYIYNTEEDIDALVEALKKV 398 (403)
T ss_pred HHHHHHhCCCCEEEEEeccCCCHHHHHHHHHHHHHH
Confidence 358999999999999999999988653
|
This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. |
| >cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.1e-15 Score=172.03 Aligned_cols=319 Identities=14% Similarity=0.104 Sum_probs=197.5
Q ss_pred CCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCC-CeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEE
Q psy8199 271 SNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKL-GHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKF 349 (965)
Q Consensus 271 ~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~-~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~v 349 (965)
.++++.+|+.+.+.. + ......+...++.+.+++.++... ..+++++||++|+..++.... .+++.|
T Consensus 10 ~~~~v~~a~~~~~~~--~--~~~~~~~~~~~~~~~la~~~g~~~~~~~~~~~~~t~al~~~~~~~~--------~~g~~v 77 (356)
T cd06451 10 VPPRVLKAMNRPMLG--H--RSPEFLALMDEILEGLRYVFQTENGLTFLLSGSGTGAMEAALSNLL--------EPGDKV 77 (356)
T ss_pred CCHHHHHHhCCCccC--C--CCHHHHHHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHHHHHHHhC--------CCCCEE
Confidence 356777777543211 1 111123446788899999997533 457899999999999987653 245778
Q ss_pred EEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEcc
Q psy8199 350 ICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEP 429 (965)
Q Consensus 350 i~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep 429 (965)
++.+.+|++...... .......+..+|..... ..|++++++.+.+ .++.+|++..
T Consensus 78 l~~~~~~~~~~~~~~-----------~~~~g~~~~~v~~~~~~------------~~~~~~l~~~i~~--~~~~~v~i~~ 132 (356)
T cd06451 78 LVGVNGVFGDRWADM-----------AERYGADVDVVEKPWGE------------AVSPEEIAEALEQ--HDIKAVTLTH 132 (356)
T ss_pred EEecCCchhHHHHHH-----------HHHhCCCeEEeecCCCC------------CCCHHHHHHHHhc--cCCCEEEEec
Confidence 888776655311100 00111234444432111 1367888888863 2455666655
Q ss_pred ccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcceeee--ccccCCCcccceeeeecH
Q psy8199 430 LVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCL--SKGITGGYLPLSLVMTTD 507 (965)
Q Consensus 430 ~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~--sK~l~gG~~pig~v~~~~ 507 (965)
+++++|.+.+ +++|.++|+++|+++|+|++|. +|.. .+....+ .+|+++. +|.++++ .++|+++.++
T Consensus 133 -~~~~~G~~~~----~~~i~~~a~~~~~~li~D~~~~-~g~~--~~~~~~~--~~d~~~~s~~K~l~~p-~g~G~l~~~~ 201 (356)
T cd06451 133 -NETSTGVLNP----LEGIGALAKKHDALLIVDAVSS-LGGE--PFRMDEW--GVDVAYTGSQKALGAP-PGLGPIAFSE 201 (356)
T ss_pred -cCCCcccccC----HHHHHHHHHhcCCEEEEeeehh-ccCc--ccccccc--CccEEEecCchhccCC-CCcceeEECH
Confidence 5788998877 8899999999999999999985 6532 2222222 3577654 6988875 4689999999
Q ss_pred HHHHhhhc-cCCcccc---------cc---cCCCCCCHHHHHHHHHHHHHHhcc---cHHHHHHHHHHHHHHHHHcccCC
Q psy8199 508 KIYNSIYY-KNNINIF---------LH---SHSYSGNPLACCAALATLEIFNKD---NILQRISQDMKKITKALTSLITH 571 (965)
Q Consensus 508 ~i~~~~~~-~~~~~~~---------~~---~~t~~~~~~~~aaa~a~L~~~~~~---~~~~~~~~~~~~l~~~L~~l~~~ 571 (965)
++++.+.. ......+ .. ..+.+.++.+++++.++++.+... .+.++.+++.+++.+.|+++ ..
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~-g~ 280 (356)
T cd06451 202 RALERIKKKTKPKGFYFDLLLLLKYWGEGYSYPHTPPVNLLYALREALDLILEEGLENRWARHRRLAKALREGLEAL-GL 280 (356)
T ss_pred HHHHHHHhcCCCCceeecHHHHHhhhcccCCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CC
Confidence 88876642 0000000 00 112234566677777888776543 45677778888888888765 11
Q ss_pred Cceeeeecee-EEEEEEEeecCccchhhHHHHHHHHHHHc-CcEEeec-----CCEEEEeCCcccCHHHHHHHHHhhhcc
Q psy8199 572 PKIINFRQKG-MIWAFDVIIEDPEQIETFSKKFFVAALKN-ELLLRPI-----GNTVYLMPPYILNKNEIQHMTSAIFQT 644 (965)
Q Consensus 572 ~~i~~v~g~G-~~~~i~~~~~~~~~~~~~~~~~~~~l~~~-Gi~~~~~-----~~~lR~~p~~~~t~~~i~~~~~~l~~~ 644 (965)
..+....+.+ .+..+.+. ++ .....+.+.|.++ ||.+.++ ++++|++|+..+++++++++++++..+
T Consensus 281 ~~~~~~~~~~~~~~~~~~~--~~----~~~~~~~~~L~~~~gI~~~~g~~~~~~~~iRis~~~~~~~e~v~~~~~~l~~~ 354 (356)
T cd06451 281 KLLAKPELRSPTVTAVLVP--EG----VDGDEVVRRLMKRYNIEIAGGLGPTAGKVFRIGHMGEATREDVLGVLSALEEA 354 (356)
T ss_pred eeccCcccCCCceEEEECC--CC----CCHHHHHHHHHHhCCEEEecccccccCCEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 1111111122 22233322 11 1134678888888 9998753 368999999999999999999988653
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway. |
| >COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.3e-15 Score=169.91 Aligned_cols=335 Identities=13% Similarity=0.154 Sum_probs=222.3
Q ss_pred cccccccccchhccCCCCCHHHHHHHHHHHhhcc-ccccC-----CCCcHHHHHHHHHHHhhcCCC-CCeEEEcCChhHH
Q psy8199 254 KRYLDAISSWWVNLFGHSNSYINKALKNQLNKLE-HVMLS-----NLTHKPVIKLSEKLSSLTQYK-LGHCFYGSDGASA 326 (965)
Q Consensus 254 ~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~-~~~~~-----~~~~~~~~~la~~l~~~~~~~-~~~v~~~~sGseA 326 (965)
-.|+|..++. ..+..|++++.+...... ..+.. ....+..++..+.++++++.+ .+.|+||++.|+|
T Consensus 23 ~vylD~aa~~------~~p~~V~~a~~~~~~~~~an~~r~~~~~~~~~t~~~e~aRe~va~~~~a~~~~eIvft~~tT~a 96 (405)
T COG0520 23 LVYLDNAATS------QKPQAVLDAVAEYYRRYNANVHRGAHTLAEEATDLYEAAREAVARFLNADSSDEIVFTRGTTEA 96 (405)
T ss_pred eEEecCcccc------cCCHHHHHHHHHHHHhhcCCcCcccchHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCChhHH
Confidence 3689987652 368899999998775431 11111 123345567778888999877 4899999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHH
Q psy8199 327 VEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARC 406 (965)
Q Consensus 327 ~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (965)
+........... .+++.||+.+.-+|....- |.....-....+..+|... .+. .
T Consensus 97 ln~va~~l~~~~-----~~gdeIv~s~~EH~sn~~p---------w~~~~~~~Ga~v~~i~~~~-~g~-----------~ 150 (405)
T COG0520 97 LNLVARGLGRSL-----KPGDEIVVSDLEHHSNIVP---------WQELAKRTGAKVRVIPLDD-DGL-----------L 150 (405)
T ss_pred HHHHHHHhhhhh-----cCCCEEEEccCcchhhHHH---------HHHHHHhcCcEEEEEecCC-CCC-----------c
Confidence 998877553211 2458899988777775221 1111111112455666542 111 3
Q ss_pred HHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcce
Q psy8199 407 AIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDF 486 (965)
Q Consensus 407 d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDi 486 (965)
++++++..+ ++++..|.+.- +.|.+|.+.| +++|.++|+++|+++++|-+|+ +|. ...+...+..|+
T Consensus 151 ~~~~~~~~i---~~~Tklvais~-vSn~tG~~~p----v~~I~~la~~~ga~v~VDaaq~-~~h----~~idv~~l~~Df 217 (405)
T COG0520 151 DLDALEKLI---TPKTKLVALSH-VSNVTGTVNP----VKEIAELAHEHGALVLVDAAQA-AGH----LPIDVQELGCDF 217 (405)
T ss_pred CHHHHHHhc---CCCceEEEEEC-ccccccccch----HHHHHHHHHHcCCEEEEECccc-cCc----cCCCchhcCCCE
Confidence 678888766 46788888888 8999999998 9999999999999999999996 432 233334556899
Q ss_pred eeec--cccCCCcccceeeeecHHHHHhhhc---cCCccc-cc--ccCCC----------CCCHHHHHHHHHHHHHHhc-
Q psy8199 487 LCLS--KGITGGYLPLSLVMTTDKIYNSIYY---KNNINI-FL--HSHSY----------SGNPLACCAALATLEIFNK- 547 (965)
Q Consensus 487 vt~s--K~l~gG~~pig~v~~~~~i~~~~~~---~~~~~~-~~--~~~t~----------~~~~~~~aaa~a~L~~~~~- 547 (965)
++|| |.|.|. -.+|.+.+++++.+.+.. ++..-. .. ...++ +.|..+..+..++++++++
T Consensus 218 ~afsgHKwl~gP-~GiGvLy~r~~~l~~l~P~~~gg~~~~~~~~~~~~~~~~~p~rfe~gTpn~~~~i~l~aAl~~~~~i 296 (405)
T COG0520 218 LAFSGHKWLLGP-TGIGVLYVRKELLEELEPFLGGGGMIEYVSRDEGVTLAELPLRFEAGTPNIAGAIGLAAALDYLLEI 296 (405)
T ss_pred EEEcccccccCC-CceEEEEEchHHHhhcCCcccCCCceeeecccccccccCcchhhccCCchHHHHHhHHHHHHHHHHH
Confidence 9998 667664 578999999999987632 110000 00 01111 1233444445566766654
Q ss_pred --ccHHHHHHHHHHHHHHHHHcccCCCceeee----eceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecC---
Q psy8199 548 --DNILQRISQDMKKITKALTSLITHPKIINF----RQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG--- 618 (965)
Q Consensus 548 --~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v----~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~--- 618 (965)
+.+.++.+++.+++.+.|+++ |++... ..++.+++|.+. . .....+...|.++||.++.+.
T Consensus 297 g~~~i~~~e~~L~~~~~~~L~~~---~~v~i~g~~~~~r~~~vsF~v~--~-----~~~~dv~~~L~~~gI~vr~g~~ca 366 (405)
T COG0520 297 GMEAIEAHERELTEYLLEGLSEL---PGVEIYGPPDADRGGIVSFNVK--G-----IHPHDVATLLDEKGIAVRAGHHCA 366 (405)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcC---CCeEEecCCcccCceEEEEEeC--C-----CCHHHHHHHHHhCCeEEEeccccc
Confidence 446677777777777777665 444321 135777887775 1 124567889999998888642
Q ss_pred ----------CEEEEeCCcccCHHHHHHHHHhhhcc
Q psy8199 619 ----------NTVYLMPPYILNKNEIQHMTSAIFQT 644 (965)
Q Consensus 619 ----------~~lR~~p~~~~t~~~i~~~~~~l~~~ 644 (965)
..+|+++.+..|.+|++.+++.+++.
T Consensus 367 ~p~~~~~~~~~~iR~S~~~YNt~edid~l~~aL~~~ 402 (405)
T COG0520 367 QPLHRLLGVDATIRASLHLYNTEEDVDRLLEALKKA 402 (405)
T ss_pred cHHHHhcCCCCceEEEEeecCCHHHHHHHHHHHHHH
Confidence 23999999999999999999988764
|
|
| >TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.3e-15 Score=169.28 Aligned_cols=321 Identities=12% Similarity=0.064 Sum_probs=200.2
Q ss_pred CCHHHHHHHHHHHhhc-cccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEE
Q psy8199 271 SNSYINKALKNQLNKL-EHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKF 349 (965)
Q Consensus 271 ~~p~v~~av~~~~~~~-~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~v 349 (965)
.+|.+.+|+...+... ..........+...++.+.++++++.+.+.+++++||++++..++..++.... .+ .+++.|
T Consensus 32 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~-~~g~~v 109 (373)
T TIGR03812 32 PHPIAVKAYDMFIETNLGDPGLFPGTKKIEEEVVGSLGNLLHLPDAYGYIVSGGTEANIQAVRAAKNLAR-EE-KRTPNI 109 (373)
T ss_pred chHHHHHHHHHHhhcCCCCcccCccHHHHHHHHHHHHHHHhCCCCCCeEEeccHHHHHHHHHHHHHHHHh-cc-CCCcEE
Confidence 5778888887765432 11111112234457888999999976666888999999999999887654210 00 133678
Q ss_pred EEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEcc
Q psy8199 350 ICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEP 429 (965)
Q Consensus 350 i~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep 429 (965)
++.+++|.++...+ ... ...+..++.+... ..|++++++++.+ ...+.+++.|
T Consensus 110 l~~~~~h~~~~~~~-~~~------------G~~~~~v~~~~~~------------~~d~~~l~~~l~~--~~~~vv~~~~ 162 (373)
T TIGR03812 110 IVPESAHFSFEKAA-EML------------GLELRYAPLDEDY------------TVDVKDVEDLIDD--NTIGIVGIAG 162 (373)
T ss_pred EECCcchHHHHHHH-HHc------------CCeEEEEeeCCCC------------CcCHHHHHHHHhh--CcEEEEEECC
Confidence 88887775542111 111 1123444432211 1378889888864 2345566666
Q ss_pred ccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccc--c-c---cccccCCCcceeeec--cccCCCcccce
Q psy8199 430 LVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK--F-F---ACEHAEIWPDFLCLS--KGITGGYLPLS 501 (965)
Q Consensus 430 ~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~--~-~---~~~~~~~~pDivt~s--K~l~gG~~pig 501 (965)
.+++|.+.+ +++|.++|+++|+++|+|++|.++ ..+. . . .....-...|.+++| | ++.+..|.|
T Consensus 163 --~~~tG~~~~----~~~i~~l~~~~~~~livD~a~~~~-~~~~~~~~~~~~~~d~~~~~~d~~~~s~~K-~~~~~~~~G 234 (373)
T TIGR03812 163 --TTELGQIDD----IEELSKIALENGIYLHVDAAFGGF-VIPFLKKGYNPPPFDFSLPGVQSITIDPHK-MGLSPIPAG 234 (373)
T ss_pred --CCCCCccCC----HHHHHHHHHHcCCeEEEEcCchhH-HHHHHhcCCCCCCccccCCCCCEEEECccc-cCCCcCCce
Confidence 678898877 899999999999999999999743 1110 0 0 011101134666654 6 333225787
Q ss_pred eee-ecHHHHHhhhccCCcccccccC---C--CCCCHHHHHHHHHHHHHHhcc---cHHHHHHHHHHHHHHHHHcccCCC
Q psy8199 502 LVM-TTDKIYNSIYYKNNINIFLHSH---S--YSGNPLACCAALATLEIFNKD---NILQRISQDMKKITKALTSLITHP 572 (965)
Q Consensus 502 ~v~-~~~~i~~~~~~~~~~~~~~~~~---t--~~~~~~~~aaa~a~L~~~~~~---~~~~~~~~~~~~l~~~L~~l~~~~ 572 (965)
+++ .++++++.+... .++..+. + .+.++.+++++.++|+.+.++ +..++..++.++|+++|+++ +
T Consensus 235 ~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~gt~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~~l~~~L~~~---g 308 (373)
T TIGR03812 235 GILFRSKSYLKYLSVD---APYLTVKKQATITGTRSGASAAATYAVIKYLGREGYRKIVAECMENTRYLVEELKKI---G 308 (373)
T ss_pred EEEEeCHHHHhhhccc---CcccCCCCCcceEeechhHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhC---C
Confidence 655 577777766421 1121111 0 123456788888889877543 36788888899999988775 2
Q ss_pred ceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec--CCEEEEeCCcccCHHHHHHHHHhhhc
Q psy8199 573 KIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI--GNTVYLMPPYILNKNEIQHMTSAIFQ 643 (965)
Q Consensus 573 ~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~--~~~lR~~p~~~~t~~~i~~~~~~l~~ 643 (965)
....+.+...++.+.+. + ...+.+.|.++|+++.+. .+.+|++++..+++++++.+++++.+
T Consensus 309 ~~~~~~~~~~~v~~~~~--~-------~~~v~~~L~~~gi~v~~~~~~~~iRis~~~~~t~edid~l~~~L~~ 372 (373)
T TIGR03812 309 FEPVIEPVLNIVAFEVD--D-------PEEVRKKLRDRGWYVSVTRCPKALRIVVMPHVTREHIEEFLEDLKE 372 (373)
T ss_pred CeEEcCCCceEEEEEeC--C-------HHHHHHHHHHCCceeccCCCCCEEEEEEECCCCHHHHHHHHHHHhh
Confidence 11122344455555442 1 235778899999999865 36899999888999999999998764
|
Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions. |
| >PRK09440 avtA valine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.2e-15 Score=172.93 Aligned_cols=345 Identities=14% Similarity=0.105 Sum_probs=198.4
Q ss_pred ccccccccchhccCCCCC--HHHHHHHHHHHhhc------cccccCCCCcHHHHHHHHHHHhhcC--CCCCeEEEcCChh
Q psy8199 255 RYLDAISSWWVNLFGHSN--SYINKALKNQLNKL------EHVMLSNLTHKPVIKLSEKLSSLTQ--YKLGHCFYGSDGA 324 (965)
Q Consensus 255 ~ylD~~~~~~~~~lGh~~--p~v~~av~~~~~~~------~~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~~~sGs 324 (965)
..+|+..|... + ... +.+.+++.+.+... ..|....+..+.+..+++.+.+..+ ...++|++|+|++
T Consensus 31 ~~i~l~~g~p~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~v~~~~I~it~Ga~ 107 (416)
T PRK09440 31 GAIMLGGGNPA--H-IPEMEDYFRDLLADLLASGKLTEALGNYDGPQGKDELIEALAALLNERYGWNISPQNIALTNGSQ 107 (416)
T ss_pred CceeccCCCCC--c-cCCHHHHHHHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEEccChH
Confidence 45777765321 1 111 34566666655431 1233334455677777877766543 3567999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCceEEEE-EcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHH
Q psy8199 325 SAVEVALKMSFHYWYNKGFLNKKKFIC-LQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEI 403 (965)
Q Consensus 325 eA~~~Al~~a~~~~~~~g~~~~~~vi~-~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (965)
+|+..++.+.... .+...++.|++ .+++|+++...+...+. +.... ....+.+...+ . +
T Consensus 108 ~al~~~~~~l~~~---~~~~~gd~v~i~~~P~y~~y~~~~~~~~~-------~~~~~--~~~~~~~~~~~-~-------~ 167 (416)
T PRK09440 108 SAFFYLFNLFAGR---RADGSLKKILFPLAPEYIGYADAGLEEDL-------FVSYR--PNIELLPEGQF-K-------Y 167 (416)
T ss_pred HHHHHHHHHHhcc---ccCCCCCeEEEecCCCchhhHHHhhccCc-------eeecc--ccccccccccc-c-------c
Confidence 9999988866420 00013567888 69999998543221110 00000 01111111000 0 0
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCC
Q psy8199 404 ARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIW 483 (965)
Q Consensus 404 ~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~ 483 (965)
..|+++|+ +. ....+.++++| +|++|.+. +.+.+++|.++|++|++++|+||+|..+- ....+........
T Consensus 168 -~~d~~~l~--~~--~~~~~i~l~~P--~NPTG~~~-s~~~~~~l~~~a~~~~~~iI~De~Y~~~~-~~~~~~~~~~~~~ 238 (416)
T PRK09440 168 -HVDFEHLH--ID--EDTGAICVSRP--TNPTGNVL-TDEELEKLDALARQHNIPLLIDNAYGPPF-PGIIFSEATPLWN 238 (416)
T ss_pred -CCCHHHcc--cC--CCceEEEEecC--CCCCCccC-CHHHHHHHHHHHHHcCCcEEEeCCccccC-CCcchhhcCcccc
Confidence 02456665 22 22234455555 89999876 77789999999999999999999995321 1100000000112
Q ss_pred ccee---eeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh--c---ccHHHHHH
Q psy8199 484 PDFL---CLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN--K---DNILQRIS 555 (965)
Q Consensus 484 pDiv---t~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~--~---~~~~~~~~ 555 (965)
+.++ +|||....| +++|++++++++++.+.. .......+.+.+++.++.++|+--. . ..+....+
T Consensus 239 ~~vI~~~SfSK~~~pG-lRiG~~i~~~~l~~~~~~------~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~ 311 (416)
T PRK09440 239 PNIILCMSLSKLGLPG-VRCGIVIADEEIIEALSN------MNGIISLAPGRLGPAIAAEMIESGDLLRLSETVIRPFYR 311 (416)
T ss_pred CCeEEEecccccCCCc-ceEEEEeCCHHHHHHHHH------HHHHhccCCCcHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 3444 689964445 899999999999888765 1222334568889988888884211 0 01222334
Q ss_pred HHHHHHHHHHHcccCCCceeeeece-eEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec-----C---------CE
Q psy8199 556 QDMKKITKALTSLITHPKIINFRQK-GMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-----G---------NT 620 (965)
Q Consensus 556 ~~~~~l~~~L~~l~~~~~i~~v~g~-G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-----~---------~~ 620 (965)
++.+.+.+.|.+......+....+. |+++++.+. .... ....+.+.|.++||.+.|+ + ++
T Consensus 312 ~r~~~~~~~L~~~l~~~~~~~~~p~gg~fiw~~~~-~~~~----~~~~~~~~l~~~gV~v~pg~~F~~~~~~~~~~~~~~ 386 (416)
T PRK09440 312 QKVQLAIALLRRYLPDEPCLIHKPEGAIFLWLWFK-DLPI----TTEELYQRLKARGVLVVPGHYFFPGLDEDWPHAHQC 386 (416)
T ss_pred HHHHHHHHHHHHhcccCCeEEecCCCceEEEEECC-CCCC----CHHHHHHHHHHCCEEEechHhhCCCCccccCCcCce
Confidence 4445555555443111123334565 566666664 1011 1345777788999999873 1 37
Q ss_pred EEEeCCcccCHHHHHHHHHhhhccc
Q psy8199 621 VYLMPPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 621 lR~~p~~~~t~~~i~~~~~~l~~~~ 645 (965)
+|++ +..+.++++++++++.+.+
T Consensus 387 iRis--~~~~~~~l~~~i~~l~~~~ 409 (416)
T PRK09440 387 IRMN--YVQDDEEIEKGIAILAEEV 409 (416)
T ss_pred EEEE--ecCCHHHHHHHHHHHHHHH
Confidence 9999 4457899999998887654
|
|
| >TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase | Back alignment and domain information |
|---|
Probab=99.71 E-value=8.2e-16 Score=176.45 Aligned_cols=201 Identities=11% Similarity=0.195 Sum_probs=156.4
Q ss_pred cCCCCCCCCCCCCCCcCCCCcccccCCCHHHHHHHHHHHHH-----CCCCEEEEeeccCCCCcccHHHHHHHHHHHHhc-
Q psy8199 689 TGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKS-----DGATRFCMGAAWRELKDRDLDNIENMICEVKKI- 762 (965)
Q Consensus 689 s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~-----~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~- 762 (965)
-..|+.+|.||.+....... ........+.++++++...+ .+++.|.|.||... ..+.+++.++++.+++.
T Consensus 56 iPFC~~~C~yC~~~~~~~~~-~~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~I~fgGGtP~--~l~~~~l~~ll~~i~~~~ 132 (455)
T TIGR00538 56 IPFCHKACYFCGCNVIITRQ-KHKADPYLDALEKEIALVAPLFDGNRHVSQLHWGGGTPT--YLSPEQISRLMKLIRENF 132 (455)
T ss_pred eCCccCcCCCCCCCccCCCC-cchHHHHHHHHHHHHHHHHHhcCCCCceEEEEECCCCcC--CCCHHHHHHHHHHHHHhC
Confidence 36799999999987643211 11111236777877776532 36888888777432 33567777777777652
Q ss_pred ----C--cEeEEecCCCCHHHHHHHHHhCCCeEeccCCC-CHHHHhcccCCCCHHHHHHHHHHHHHcCCc-eeeeEEEec
Q psy8199 763 ----G--LETCLTLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGIN-ICCGGIIGL 834 (965)
Q Consensus 763 ----~--~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~~es-~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~-v~~~~i~Gl 834 (965)
+ +.+.+++..++++.++.|+++|++++.+|+|| ++++++.+++.++.++..++++.++++|+. +...+|+|+
T Consensus 133 ~~~~~~eitie~np~~l~~e~l~~lk~~G~~risiGvqS~~~~~l~~l~r~~~~~~~~~ai~~l~~~G~~~v~~dli~Gl 212 (455)
T TIGR00538 133 PFNADAEISIEIDPRYITKDVIDALRDEGFNRLSFGVQDFNKEVQQAVNRIQPEEMIFELMNHAREAGFTSINIDLIYGL 212 (455)
T ss_pred CCCCCCeEEEEeccCcCCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEeeC
Confidence 2 44566788899999999999999999999999 999999999999999999999999999995 889999999
Q ss_pred -CCCHHHHHHHHHHHHhcCCCCCceeeccccccCCC-CCC----CCCCCCHHHHHHHHHHHHHHCC
Q psy8199 835 -SESRDQRAELIFQLANLNPYPESVPINNLVQIKGT-PLY----GSSILDPLEFIRTIAVARITMP 894 (965)
Q Consensus 835 -~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT-~l~----~~~~~~~~~~~~~ia~~R~~lp 894 (965)
++|.+++.++++.+.+++ ++.+.++.+.+.|++ +.. ....++.++..+++..++..+.
T Consensus 213 Pgqt~e~~~~tl~~~~~l~--~~~is~y~L~~~p~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~L~ 276 (455)
T TIGR00538 213 PKQTKESFAKTLEKVAELN--PDRLAVFNYAHVPWVKPAQRKIPEAALPSAEEKLDILQETIAFLT 276 (455)
T ss_pred CCCCHHHHHHHHHHHHhcC--CCEEEEecCccccchhHHHhcccccCCCCHHHHHHHHHHHHHHHH
Confidence 699999999999999999 999999999776653 222 2234578888888777766553
|
This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein. |
| >PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.1e-15 Score=173.32 Aligned_cols=339 Identities=12% Similarity=0.091 Sum_probs=209.6
Q ss_pred CcccccccccchhccCCCCCHHHHHHHHHHHhhccccccC--CC----CcHHHHHHHHHHHhhcCCC-CCeEEEcCChhH
Q psy8199 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLS--NL----THKPVIKLSEKLSSLTQYK-LGHCFYGSDGAS 325 (965)
Q Consensus 253 G~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~--~~----~~~~~~~la~~l~~~~~~~-~~~v~~~~sGse 325 (965)
+..|||..+. |..++.|.+++.+.+......... .+ ..+...++.+.++++++.. .++|+|++|+|+
T Consensus 32 ~~iyLd~a~~------~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~ 105 (424)
T PLN02855 32 KLVYLDNAAT------SQKPAAVLDALQDYYEEYNSNVHRGIHALSAKATDAYELARKKVAAFINASTSREIVFTRNATE 105 (424)
T ss_pred CeEEeeCccc------cCCCHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCHHH
Confidence 4578997543 336788999998877653211101 11 1223457778899998764 469999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHH
Q psy8199 326 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIAR 405 (965)
Q Consensus 326 A~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (965)
|+..+++..... ...++++|++.+..|++........ .......+..++......
T Consensus 106 al~~i~~~~~~~----~~~~gd~vl~~~~~~~s~~~~~~~~---------a~~~g~~v~~v~~~~~~~------------ 160 (424)
T PLN02855 106 AINLVAYTWGLA----NLKPGDEVILSVAEHHSNIVPWQLV---------AQKTGAVLKFVGLTPDEV------------ 160 (424)
T ss_pred HHHHHHHHhhhh----cCCCcCEEEECCCccHHHHHHHHHH---------HHHcCCEEEEEecCCCCC------------
Confidence 999888743100 0034577888887765431111000 001112334444321111
Q ss_pred HHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcc
Q psy8199 406 CAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPD 485 (965)
Q Consensus 406 ~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pD 485 (965)
.|++++++.+.+ ++.+|++.. +++++|.+.| +++|.++|+++|+++|+|++|. +|.. ........+|
T Consensus 161 ~~~~~l~~~i~~---~t~lv~i~~-~~n~tG~~~~----~~~I~~l~~~~g~~vivD~a~~-~g~~----~~~~~~~~~d 227 (424)
T PLN02855 161 LDVEQLKELLSE---KTKLVATHH-VSNVLGSILP----VEDIVHWAHAVGAKVLVDACQS-VPHM----PVDVQTLGAD 227 (424)
T ss_pred cCHHHHHHHhcc---CceEEEEeC-ccccccccCC----HHHHHHHHHHcCCEEEEEhhhh-cCCc----CCCchhcCCC
Confidence 367888888852 556667776 7999999988 8899999999999999999995 5432 1222233478
Q ss_pred eee--eccccCCCcccceeeeecHHHHHhhhcc--CCcc---cc---------cccCCC-CCCHHHHHHHHHHHHHHhc-
Q psy8199 486 FLC--LSKGITGGYLPLSLVMTTDKIYNSIYYK--NNIN---IF---------LHSHSY-SGNPLACCAALATLEIFNK- 547 (965)
Q Consensus 486 ivt--~sK~l~gG~~pig~v~~~~~i~~~~~~~--~~~~---~~---------~~~~t~-~~~~~~~aaa~a~L~~~~~- 547 (965)
+++ +.| +.|. ..+|++++++++++.+..- +... .+ ...... +.+..+.++..++|+.+.+
T Consensus 228 ~~~~s~~K-~~gp-~G~G~l~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~ 305 (424)
T PLN02855 228 FLVASSHK-MCGP-TGIGFLWGKSDLLESMPPFLGGGEMISDVFLDHSTYAPPPSRFEAGTPAIGEAIGLGAAIDYLSEI 305 (424)
T ss_pred EEEeeccc-ccCC-CccEEEEEchhhhhcCCCEecCCCceeeeecCccccCCChhhccCCChHHHHHHHHHHHHHHHHHh
Confidence 875 568 4442 3589999998887665321 0000 00 000011 2345566777778877654
Q ss_pred --ccHHHHHHHHHHHHHHHHHcccCCCceeee-------eceeEEEEEEEeecCccchhhHHHHHHHHHHHc-CcEEeec
Q psy8199 548 --DNILQRISQDMKKITKALTSLITHPKIINF-------RQKGMIWAFDVIIEDPEQIETFSKKFFVAALKN-ELLLRPI 617 (965)
Q Consensus 548 --~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v-------~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~-Gi~~~~~ 617 (965)
+.+.++.+++.+++++.|+++ +++..+ ...+.++.+.+. . .....+.+.|.++ ||.++.+
T Consensus 306 g~~~i~~~~~~l~~~l~~~L~~~---~g~~i~~~~~~~~~~r~~~v~~~~~--~-----~~~~~v~~~L~~~~gI~v~~g 375 (424)
T PLN02855 306 GMDRIHEYEVELGTYLYEKLSSV---PGVRIYGPKPSEGVGRAALCAFNVE--G-----IHPTDLSTFLDQQHGVAIRSG 375 (424)
T ss_pred CHHHHHHHHHHHHHHHHHHHhcC---CCEEEeCCCcccccCcccEEEEEEC--C-----cCHHHHHHHhcccCCEEEech
Confidence 335566777777777777654 343322 123456666653 1 0133577788777 9988742
Q ss_pred -------------CCEEEEeCCcccCHHHHHHHHHhhhccccc
Q psy8199 618 -------------GNTVYLMPPYILNKNEIQHMTSAIFQTFNE 647 (965)
Q Consensus 618 -------------~~~lR~~p~~~~t~~~i~~~~~~l~~~~~~ 647 (965)
.+.+|+++++..+.+|++++++.+.+....
T Consensus 376 ~~c~~~~~~~~g~~~~iRiS~~~ynt~~di~~l~~~l~~~~~~ 418 (424)
T PLN02855 376 HHCAQPLHRYLGVNASARASLYFYNTKEEVDAFIHALKDTIAF 418 (424)
T ss_pred hhhhHHHHHHhCCCCeEEEEeccCCCHHHHHHHHHHHHHHHHH
Confidence 157999999999999999999998765543
|
|
| >COG0320 LipA Lipoate synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.3e-16 Score=152.29 Aligned_cols=194 Identities=23% Similarity=0.341 Sum_probs=160.5
Q ss_pred cCCCCCCCCCCCCCCcCCCCcccccCCCHHHHHHHHHHHHHCCCCEEEEeeccC-CCCcccHHHHHHHHHHHHhcCcEeE
Q psy8199 689 TGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWR-ELKDRDLDNIENMICEVKKIGLETC 767 (965)
Q Consensus 689 s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~l~~g~~-~~~~~~~~~~~~~~~~i~~~~~~i~ 767 (965)
...|..+|.||..... .+. .++++|-.+.++..+.+|.+.+.|++... ++.+.....+.+.+++|++.++.+.
T Consensus 77 G~~CTR~C~FC~V~~g-~P~-----~lD~~EP~rvAeaV~~mgLkyVViTsVdRDDL~DGGA~hfa~~i~~Ire~~P~t~ 150 (306)
T COG0320 77 GDICTRRCRFCDVKTG-RPN-----PLDPDEPERVAEAVKDMGLKYVVITSVDRDDLPDGGAQHFAECIRAIRELNPQTT 150 (306)
T ss_pred cchhccCCCccccCCC-CCC-----CCCCchHHHHHHHHHHhCCCeEEEEeeccccccccchHHHHHHHHHHHhhCCCce
Confidence 7899999999987652 222 48899999999999999999999999876 6677789999999999998654433
Q ss_pred E----ecCCCCHHHHHHHHHhCCCeEeccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcC--CceeeeEEEecCCCHHHH
Q psy8199 768 L----TLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVG--INICCGGIIGLSESRDQR 841 (965)
Q Consensus 768 ~----~~~~~~~e~l~~Lk~aG~~~i~i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~G--i~v~~~~i~Gl~et~ed~ 841 (965)
+ ....-.++.++.+.++|.+.+++++||.++++..++++.+|++-++.++.+++.+ +.+.+++|+|||||.+++
T Consensus 151 iEvL~PDF~G~~~al~~v~~~~pdV~nHNvETVprL~~~VRp~A~Y~~SL~~L~~~k~~~P~i~TKSgiMlGLGEt~~Ev 230 (306)
T COG0320 151 IEVLTPDFRGNDDALEIVADAGPDVFNHNVETVPRLYPRVRPGATYERSLSLLERAKELGPDIPTKSGLMVGLGETDEEV 230 (306)
T ss_pred EEEeCccccCCHHHHHHHHhcCcchhhcccccchhcccccCCCCcHHHHHHHHHHHHHhCCCcccccceeeecCCcHHHH
Confidence 3 3233388999999999999999999999999999999999999999999999998 899999999999999999
Q ss_pred HHHHHHHHhcCCCCCceeeccccccCCCCCCCCCCCCHHHHHHHHHHHH
Q psy8199 842 AELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVAR 890 (965)
Q Consensus 842 ~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~~~~~~~~~~~~~ia~~R 890 (965)
.++++-|++.+ .+.+.+..|+...---+.-..-.+++++...-.++.
T Consensus 231 ~e~m~DLr~~g--vdilTiGQYlqPS~~HlpV~ryv~PeeF~~~~~~a~ 277 (306)
T COG0320 231 IEVMDDLRSAG--VDILTIGQYLQPSRKHLPVQRYVTPEEFDELEEVAE 277 (306)
T ss_pred HHHHHHHHHcC--CCEEEeccccCCccccCCceeccCHHHHHHHHHHHH
Confidence 99999999999 899999888654332233334456666665544444
|
|
| >PLN02397 aspartate transaminase | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.4e-15 Score=171.87 Aligned_cols=340 Identities=8% Similarity=-0.017 Sum_probs=192.8
Q ss_pred cccccccccchhccCCCCCHHHHHHHHHH----Hhhc--cccccCCCCcHHHHHHHHHHHhhcCCC--CCeE--EEcCCh
Q psy8199 254 KRYLDAISSWWVNLFGHSNSYINKALKNQ----LNKL--EHVMLSNLTHKPVIKLSEKLSSLTQYK--LGHC--FYGSDG 323 (965)
Q Consensus 254 ~~ylD~~~~~~~~~lGh~~p~v~~av~~~----~~~~--~~~~~~~~~~~~~~~la~~l~~~~~~~--~~~v--~~~~sG 323 (965)
...|++..|....+- .+|.+.+++.++ +... .+|....+..+.+..+++++.+..... .+++ ..+.+|
T Consensus 48 ~~~l~l~~g~~p~~~--~~p~~~~~~~~a~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~~~~~~~~~i~~~~i~~g 125 (423)
T PLN02397 48 PVKLNLGVGAYRTEE--GKPVVLNVVRKAEQRLLAGSRNKEYLPIEGLAEFNKLSAKLAYGADSPAIKENRVATVQCLSG 125 (423)
T ss_pred cceEecccceeeCCC--CCcccchHHHHHHHHhhccCCCCCCCCcCCCHHHHHHHHHHHcCCCCchhhcCeeEeeecccc
Confidence 455777666322222 234444555444 2211 124444555666677777665443211 1233 113444
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecC-CCCCCCCCCCChhH
Q psy8199 324 ASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITT-PDSRNINKGNSANE 402 (965)
Q Consensus 324 seA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 402 (965)
+.|...++.+.... .++++|++.+++|.++...+...++ ..+.+|. +.....
T Consensus 126 ~Ga~~l~~~~~~~~------~pGd~Vlv~~P~y~~y~~~~~~~g~-------------~~~~v~l~~~~~~~-------- 178 (423)
T PLN02397 126 TGSLRLGAEFLARF------YPGSTIYIPNPTWGNHHNIFRDAGV-------------PVRTYRYYDPKTRG-------- 178 (423)
T ss_pred hHHHHHHHHHHHHh------CCCCEEEEeCCCchhHHHHHHHcCC-------------eEEEeecccCcCCc--------
Confidence 44444333333322 2568899999999888444333332 2233332 111111
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccc---ccccccc
Q psy8199 403 IARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTG---KFFACEH 479 (965)
Q Consensus 403 ~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G---~~~~~~~ 479 (965)
.|++.+++.+.+...++.++++.. ++|++|.+. +.+.+++|.++|++||+++|+||+|.+|...+ .......
T Consensus 179 ---~d~~~l~~~l~~~~~~~~~i~~~~-P~NPTG~v~-s~e~l~~i~~~a~~~~~~vI~De~Y~~l~~~~~~~~~~~~~~ 253 (423)
T PLN02397 179 ---LDFDGLLEDLKAAPDGSFVLLHAC-AHNPTGVDP-TPEQWEQISDLIKSKNHLPFFDSAYQGFASGDLDADAQSVRM 253 (423)
T ss_pred ---cCHHHHHHHHHhCCCCCEEEEeCC-CCCCCCCCC-CHHHHHHHHHHHHhCCcEEEEecccCCccCCchhhhhHHHHH
Confidence 366777777754434455555554 599999876 78889999999999999999999999985422 1111111
Q ss_pred c-CCCccee---eeccccC-CCcccceeee--e-cHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh-----
Q psy8199 480 A-EIWPDFL---CLSKGIT-GGYLPLSLVM--T-TDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN----- 546 (965)
Q Consensus 480 ~-~~~pDiv---t~sK~l~-gG~~pig~v~--~-~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~----- 546 (965)
+ ...++++ +|||.++ .| |++|+++ + ++++++.+... .........++.+.++++++.++|+.-.
T Consensus 254 ~~~~~~~vI~~~SfSK~~~~~G-~RvG~~v~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~q~~~~~~L~~~~~~~~~ 330 (423)
T PLN02397 254 FVEDGHEILVAQSYAKNMGLYG-ERVGALSVVCKSADVAVRVKSQ--LKLIARPMYSNPPIHGASIVATILGDPELFSEW 330 (423)
T ss_pred HHhcCCcEEEEEECcccCCCcc-ccceEEEEEeCCHHHHHHHHHH--HHHHHhcccCCCcHHHHHHHHHHhCCHHHHHHH
Confidence 1 1112344 6899887 35 9999974 3 55554433210 0001111223456678877777774210
Q ss_pred ---cccHHHHHHHHHHHHHHHHHcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHH-HHcCcEEeecCCEEE
Q psy8199 547 ---KDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAA-LKNELLLRPIGNTVY 622 (965)
Q Consensus 547 ---~~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l-~~~Gi~~~~~~~~lR 622 (965)
-++..++++++.+.+.+.|+++..-..+..+.++|.|+.+.-. + ..+++.| .+.||.+.+.+ |
T Consensus 331 ~~~~~~~~~~~~~rr~~l~~~L~~~~~~~~~~~~~p~gg~fl~~~l--~--------~~~~~~Ll~~~~V~v~~~~---R 397 (423)
T PLN02397 331 TKELKGMADRIISMRQKLYDALEARGSPGDWSHITKQIGMFSFTGL--N--------KEQVDRMTKEYHIYMTRDG---R 397 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccCCceEEEecCC--C--------HHHHHHHHHhCCEEECCCC---e
Confidence 1234556777777787877765110124456678887766432 1 1354555 47799997643 8
Q ss_pred EeCCcc-cCHHHHHHHHHhhhccc
Q psy8199 623 LMPPYI-LNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 623 ~~p~~~-~t~~~i~~~~~~l~~~~ 645 (965)
++ ++ .+.+.++++++++.+++
T Consensus 398 i~--~~~~~~~~i~~~~~~i~~~~ 419 (423)
T PLN02397 398 IS--MAGLSSKNVPYLADAIHAVV 419 (423)
T ss_pred EE--EeeCCHHHHHHHHHHHHHHH
Confidence 88 44 88899999999988764
|
|
| >TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.9e-15 Score=168.96 Aligned_cols=334 Identities=13% Similarity=0.078 Sum_probs=197.2
Q ss_pred cccccccchhccCCCCCHHHHHHHHHHHhhcccc--ccCCCCcHHHHHHHHHH---HhhcCC-CCCeEEEcCChhHHHHH
Q psy8199 256 YLDAISSWWVNLFGHSNSYINKALKNQLNKLEHV--MLSNLTHKPVIKLSEKL---SSLTQY-KLGHCFYGSDGASAVEV 329 (965)
Q Consensus 256 ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~--~~~~~~~~~~~~la~~l---~~~~~~-~~~~v~~~~sGseA~~~ 329 (965)
|+|..++.. .++.|++++.+.+...... ....+.......+.+.+ .+.++. ..++++|++|++||+..
T Consensus 2 yld~aa~~~------~~~~v~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~i~~t~g~teal~~ 75 (382)
T TIGR03403 2 YLDNNATTM------LDPKVKELMDPFFCDIYGNPNSLHQFGTATHPAIAEALDKLYKGINARDLDDIIITSCATESNNW 75 (382)
T ss_pred cccCcCCCC------CCHHHHHHHHHHHHhcCcCCccccHHHHHHHHHHHHHHHHHHHHcCcCCCCeEEEeCCHHHHHHH
Confidence 889877654 6889999999887653111 11112222233343333 333432 46799999999999999
Q ss_pred HHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHH
Q psy8199 330 ALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIF 409 (965)
Q Consensus 330 Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 409 (965)
+++.+.... . -.+++++|++.+..|+........+ ......+..+|.+.. +. .|++
T Consensus 76 ~~~~~~~~~-~-~~~~~~~vi~~~~e~ps~~~~~~~~----------~~~G~~v~~v~~~~~-g~-----------~d~~ 131 (382)
T TIGR03403 76 VLKGVYFDE-I-LKGGKNHIITTEVEHPAVRATCAFL----------ESLGVEVTYLPINEQ-GT-----------ITAE 131 (382)
T ss_pred HHHHHHHhh-c-ccCCCCEEEEcCCccHHHHHHHHHH----------HHCCCEEEEEecCCC-CC-----------CCHH
Confidence 988652100 0 0123456777765444332111000 011123445554321 11 2678
Q ss_pred HHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcceeee
Q psy8199 410 DLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCL 489 (965)
Q Consensus 410 ~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~ 489 (965)
+|++++.+ ++.+|++.. ++|++|.+.+ +++|.++|+++|+++|+|++|. +|.. ........+|++++
T Consensus 132 ~l~~~i~~---~t~lv~~~~-~~n~tG~~~~----~~~I~~la~~~g~~~ivD~a~~-~g~~----~~~~~~~~~D~~~~ 198 (382)
T TIGR03403 132 QVREAITE---KTALVSVMW-ANNETGMIFP----IKEIGEICKERGVLFHTDAVQA-IGKI----PVDVQKAGVDFLSF 198 (382)
T ss_pred HHHHhccc---CCeEEEEEc-ccCCCccccC----HHHHHHHHHHcCCEEEEechhh-cCCC----ccCccccCCCEEEE
Confidence 88888753 345666666 6899999987 8899999999999999999986 4321 12222345799988
Q ss_pred c--cccCCCcccceeeeecHHHH-HhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHH
Q psy8199 490 S--KGITGGYLPLSLVMTTDKIY-NSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK--DNILQRISQDMKKITKA 564 (965)
Q Consensus 490 s--K~l~gG~~pig~v~~~~~i~-~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~--~~~~~~~~~~~~~l~~~ 564 (965)
| |. .|. ..+|++..++... .....++.+.... ...+.|..++.++.++|+...+ +...++++++.+++.++
T Consensus 199 s~~K~-~gp-~G~g~l~vr~~~~~~p~~~g~~~~~~~--~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~ 274 (382)
T TIGR03403 199 SAHKF-HGP-KGVGGLYIRKGVELTPLFHGGEHMGGR--RSGTLNVPYIVAMGEAMRLANEYLDFEKSHVRRLRDRLEDA 274 (382)
T ss_pred cchhh-CCC-CceEEEEECCCCCCCCcccCCCCCCCc--ccCCcChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 7 84 332 2367777765431 1111100000001 1234577777777788876543 22345666677777777
Q ss_pred HHcccCCCceeeeece----eEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec-----------------------
Q psy8199 565 LTSLITHPKIINFRQK----GMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI----------------------- 617 (965)
Q Consensus 565 L~~l~~~~~i~~v~g~----G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~----------------------- 617 (965)
|.++ +++..+.+. ..++.+.+. . .. ...+...|.++||.++.+
T Consensus 275 L~~~---~~~~~~~~~~~~~~~~~~~~~~--~----~~-~~~~~~~L~~~gI~v~~g~~c~~~~~~~~~v~~~~g~~~~~ 344 (382)
T TIGR03403 275 LLEL---PDVFVVGDREHRVPNTILISIK--G----VE-GEAMLWDLNKAGIAASTGSACASEDLEANPVMVAIGADKEL 344 (382)
T ss_pred HhcC---CCEEEECCCCCCcCCEEEEEeC--C----CC-HHHHHHhhccCCEEEEchhccCCCCCCcCHHHHHcCCChHH
Confidence 6554 454433221 335555543 1 01 234556688899999831
Q ss_pred -CCEEEEeCCcccCHHHHHHHHHhhhcccc
Q psy8199 618 -GNTVYLMPPYILNKNEIQHMTSAIFQTFN 646 (965)
Q Consensus 618 -~~~lR~~p~~~~t~~~i~~~~~~l~~~~~ 646 (965)
++.+|++++...|.+|++++++++.+.+.
T Consensus 345 ~~~~iR~s~~~~~t~~did~~~~~l~~~~~ 374 (382)
T TIGR03403 345 AHTAIRLSLSRFTTEEEIDYTIEVFKKAVQ 374 (382)
T ss_pred hCeeEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 25799999999999999999999876543
|
Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation. |
| >TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.1e-15 Score=168.56 Aligned_cols=299 Identities=16% Similarity=0.182 Sum_probs=189.7
Q ss_pred cHHHHHHHHHHHhhcCCCC--CeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCcc
Q psy8199 296 HKPVIKLSEKLSSLTQYKL--GHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFK 373 (965)
Q Consensus 296 ~~~~~~la~~l~~~~~~~~--~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~ 373 (965)
.+..+++.+.++++++... +.+++++|||+|++.++..... +++++++...++++.....
T Consensus 34 ~~~~~~~r~~la~l~~~~~~~~~i~~t~~~t~al~~~~~~l~~--------~~~~vlv~~~~~~~~~~~~---------- 95 (363)
T TIGR02326 34 NIVVEQIRQQLLALATAEEGYTSVLLQGSGTFAVEAVIGSAVP--------KDGKLLVVINGAYGARIVQ---------- 95 (363)
T ss_pred HHHHHHHHHHHHHHhCCCCCceEEEEcCCCHHHHHHHHHhcCC--------CCCeEEEEeCChhhHHHHH----------
Confidence 3445677888899887543 3689999999999999876532 4456666666676652110
Q ss_pred chhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHH
Q psy8199 374 EIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICN 453 (965)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~ 453 (965)
........+..++.+.... .|++++++++.+++ ++..|.+-- +.+++|.+.| +++|.++|+
T Consensus 96 -~a~~~g~~~~~v~~~~~~~------------~d~~~l~~~l~~~~-~~~~v~~~~-~~~~tG~~~~----i~~I~~l~~ 156 (363)
T TIGR02326 96 -IAEYLGIPHHVVDTGEVEP------------PDVVEVEAILAADP-AITHIALVH-CETTTGILNP----IEAVAKLAH 156 (363)
T ss_pred -HHHHcCCceEEEeCCCCCC------------CCHHHHHHHHhhCC-CccEEEEEe-ecCCccccCc----HHHHHHHHH
Confidence 0011122344555432111 36788888887543 333344433 4778999887 899999999
Q ss_pred hcCCeEEEeccccCCCcccccccccccCCCcceee--eccccCCCcccceeeeecHHHHHhhhccCCccccc--------
Q psy8199 454 NYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLC--LSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFL-------- 523 (965)
Q Consensus 454 ~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt--~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~-------- 523 (965)
+||+++|+|.+|+ +|.. .+.... ..+|+++ ++|++.|+ ..+|+++++++.++.+... ..++.
T Consensus 157 ~~g~~livD~~~~-~g~~--~~~~~~--~~~D~~~~s~~K~l~~p-~G~G~l~~~~~~~~~~~~~--~~~~~~~~~~~~~ 228 (363)
T TIGR02326 157 RHGKVTIVDAMSS-FGGI--PIDIAE--LHIDYLISSANKCIQGV-PGFGFVIARQAELAACKGN--ARSLSLDLYDQWR 228 (363)
T ss_pred HcCCEEEEEcccc-ccCc--ccchhh--cCccEEEecCccccccC-CcceEEEECHHHHHHhhcC--CCceeecHHHHHH
Confidence 9999999999885 6532 222332 3468775 57988775 3679999998877654321 01000
Q ss_pred ------ccCCCCCCHHHHHHHHHHHHHHhcc----cHHHHHHHHHHHHHHHHHcccCCCceeee-eceeEEEEEEEeecC
Q psy8199 524 ------HSHSYSGNPLACCAALATLEIFNKD----NILQRISQDMKKITKALTSLITHPKIINF-RQKGMIWAFDVIIED 592 (965)
Q Consensus 524 ------~~~t~~~~~~~~aaa~a~L~~~~~~----~~~~~~~~~~~~l~~~L~~l~~~~~i~~v-~g~G~~~~i~~~~~~ 592 (965)
....|+.++.++.+..++|+.+.++ +..++..++.+++++.|+++ ....+..- ...+.+..+.+. ..
T Consensus 229 ~~~~~~~~~~ft~~~~~~~al~~al~~l~~~g~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~-~~ 306 (363)
T TIGR02326 229 CMEDNHGKWRFTSPTHVVHAFAQALLELEKEGGVAARHQRYQQNQKTLVAGMRAL-GFEPLLDDEIQSPIITSFYSP-ED 306 (363)
T ss_pred HHhccCCCCCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHc-CCeeccCcccCCceEEEEECC-CC
Confidence 0123456777888888888776443 35567778888888888765 11111110 012333444443 11
Q ss_pred ccchhhHHHHHHHHHHHcCcEEeec----CCEEEEeCCcccCHHHHHHHHHhhhcc
Q psy8199 593 PEQIETFSKKFFVAALKNELLLRPI----GNTVYLMPPYILNKNEIQHMTSAIFQT 644 (965)
Q Consensus 593 ~~~~~~~~~~~~~~l~~~Gi~~~~~----~~~lR~~p~~~~t~~~i~~~~~~l~~~ 644 (965)
. ......+.+.|.++||.+.++ .+.+|+++....+.++++.+++++.+.
T Consensus 307 ~---~~~~~~v~~~L~~~gi~v~~g~~~~~~~iRi~~~~~~~~edv~~~l~~l~~~ 359 (363)
T TIGR02326 307 P---DYRFADFYQRLKEQGFVIYPGKVSQVDCFRIGNIGEVDAADITRLLTAIGKA 359 (363)
T ss_pred C---CCCHHHHHHHHHHCCEEEECCcCCCCCEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 0 001335778889999999875 368999976668999999999988764
|
Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli. |
| >PRK02948 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.7e-15 Score=171.97 Aligned_cols=330 Identities=13% Similarity=0.077 Sum_probs=202.7
Q ss_pred ccccccccchhccCCCCCHHHHHHHHHHHhhccccccCC-----CCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHH
Q psy8199 255 RYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSN-----LTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEV 329 (965)
Q Consensus 255 ~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~-----~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~ 329 (965)
.|||..+. |..++.+++|+.+.+.......... ......+++.+.++++++...+.|+|++|+++|+..
T Consensus 2 ~yld~a~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~i~~~~g~t~a~~~ 75 (381)
T PRK02948 2 IYLDYAAT------TPMSKEALQTYQKAASQYFGNESSLHDIGGTASSLLQVCRKTFAEMIGGEEQGIYFTSGGTESNYL 75 (381)
T ss_pred EeccCCCC------CCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCcHHHHHHH
Confidence 47887654 3368999999988776421110011 122445677888999987677899999999999999
Q ss_pred HHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHH
Q psy8199 330 ALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIF 409 (965)
Q Consensus 330 Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 409 (965)
++..+.... . .+++.|++.. ..|.+........ ......+..+|.... +. .|++
T Consensus 76 ~~~~~~~~~---~-~~g~~vv~~~-~~h~s~~~~~~~~---------~~~g~~v~~v~~~~~-~~-----------~d~~ 129 (381)
T PRK02948 76 AIQSLLNAL---P-QNKKHIITTP-MEHASIHSYFQSL---------ESQGYTVTEIPVDKS-GL-----------IRLV 129 (381)
T ss_pred HHHHHHHhc---c-CCCCEEEECC-cccHHHHHHHHHH---------HhCCCEEEEEeeCCC-CC-----------CCHH
Confidence 988765310 0 1345555544 4444322211110 001112333443211 11 3788
Q ss_pred HHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCccee--
Q psy8199 410 DLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL-- 487 (965)
Q Consensus 410 ~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDiv-- 487 (965)
+|++.+. +++..|+++. +++++|.+.+ +++|.++|+++|+++|+|++++ ||... ...+.+ ..|++
T Consensus 130 ~l~~~l~---~~~~lv~~~~-~~n~tG~~~~----~~~I~~l~~~~~~~vivD~~~~-~g~~~--~~~~~~--~~d~~~~ 196 (381)
T PRK02948 130 DLERAIT---PDTVLASIQH-ANSEIGTIQP----IAEIGALLKKYNVLFHSDCVQT-FGKLP--IDVFEM--GIDSLSV 196 (381)
T ss_pred HHHHhcC---CCCEEEEEEC-CcCCcEeehh----HHHHHHHHHHcCCEEEEEChhh-ccccc--cCcccC--CCCEEEe
Confidence 8888875 2456677776 6999999987 8899999999999999998885 76432 222223 36776
Q ss_pred eeccccCCCcccceeeeecHHH-HHhhhccCC-cccccccCCCCCCHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHH
Q psy8199 488 CLSKGITGGYLPLSLVMTTDKI-YNSIYYKNN-INIFLHSHSYSGNPLACCAALATLEIFNK--DNILQRISQDMKKITK 563 (965)
Q Consensus 488 t~sK~l~gG~~pig~v~~~~~i-~~~~~~~~~-~~~~~~~~t~~~~~~~~aaa~a~L~~~~~--~~~~~~~~~~~~~l~~ 563 (965)
+++|.++. ..+|++++++++ +..+..++. ...+ ..++.|.++++++.++|+.+.+ ++..++++++.+++.+
T Consensus 197 s~~K~~gp--~G~G~l~~~~~~~~~~~~~~~~~~~~~---~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~ 271 (381)
T PRK02948 197 SAHKIYGP--KGVGAVYINPQVRWKPVFPGTTHEKGF---RPGTVNVPGIAAFLTAAENILKNMQEESLRFKELRSYFLE 271 (381)
T ss_pred cHHhcCCC--CcEEEEEEcCCCCCCCcccCCCCCCCc---CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46796542 347888887764 211111000 0011 2235678888888899886532 3456778888888888
Q ss_pred HHHcccCCCceeeeec-----eeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec---------------------
Q psy8199 564 ALTSLITHPKIINFRQ-----KGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI--------------------- 617 (965)
Q Consensus 564 ~L~~l~~~~~i~~v~g-----~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~--------------------- 617 (965)
.|+++ ... +. ..+ ...+..+.+. . .. ...+...|.++||.++.+
T Consensus 272 ~L~~~-~~~-v~-~~~~~~~~~~~i~~~~~~--~----~~-~~~~~~~l~~~gI~v~~g~~c~~~~~~p~~~~~~~~~~~ 341 (381)
T PRK02948 272 QIQTL-PLP-IE-VEGHSTSCLPHIIGVTIK--G----IE-GQYTMLECNRRGIAISTGSACQVGKQEPSKTMLAIGKTY 341 (381)
T ss_pred HHhcC-CCC-EE-EeCCCccCcCCEEEEEeC--C----CC-HHHHHHhcccCCEEEEchHhcCCCCCCCCHHHHHcCCCh
Confidence 88765 111 11 111 1123333332 1 01 234566778899999741
Q ss_pred ---CCEEEEeCCcccCHHHHHHHHHhhhcc
Q psy8199 618 ---GNTVYLMPPYILNKNEIQHMTSAIFQT 644 (965)
Q Consensus 618 ---~~~lR~~p~~~~t~~~i~~~~~~l~~~ 644 (965)
++++|+++...++++|++.+++.+.+.
T Consensus 342 ~~~~~~lRis~~~~~t~~di~~l~~~l~~~ 371 (381)
T PRK02948 342 EEAKQFVRFSFGQQTTKDQIDTTIHALETI 371 (381)
T ss_pred HHhCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 258999999999999999999988754
|
|
| >TIGR01814 kynureninase kynureninase | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.9e-15 Score=170.03 Aligned_cols=339 Identities=15% Similarity=0.136 Sum_probs=199.9
Q ss_pred CCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCC------CCcHHHHHHHHHHHhhcCCCCCeEEEcCChhH
Q psy8199 252 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSN------LTHKPVIKLSEKLSSLTQYKLGHCFYGSDGAS 325 (965)
Q Consensus 252 dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~------~~~~~~~~la~~l~~~~~~~~~~v~~~~sGse 325 (965)
++..|||..+ +|-.++.+.+|+.+.++........+ .......++ +++ ++++...++++|++|+|+
T Consensus 26 ~~~iyld~~a------~g~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~l~g~~~~~v~~~~~~t~ 97 (406)
T TIGR01814 26 NAVIYLDGNS------LGLMPKAARNALKEELDKWAKIAIRGHNTGKAPWFTLDESL-LKL-RLVGAKEDEVVVMNTLTI 97 (406)
T ss_pred CCcEEecCCC------cCcCcHHHHHHHHHHHHHHHHhhhccCccCCCChhhhhhhh-ccc-cccCCCCCcEEEeCCchH
Confidence 3457888544 33357888999988776532111000 111222233 334 777767789999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCe----eEecCCCCCCCCCCCChh
Q psy8199 326 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKT----YIITTPDSRNINKGNSAN 401 (965)
Q Consensus 326 A~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 401 (965)
++..+++.... .+ .++..|++.+..| .+....+.... ......+ ..++... .+.
T Consensus 98 ~l~~~~~~~~~----~~-~~~~~i~~~~~~~-~s~~~~~~~~~--------~~~g~~~~~~~~~~~~~~-~g~------- 155 (406)
T TIGR01814 98 NLHLLLASFYK----PT-PKRYKILLEAKAF-PSDHYAIESQL--------QLHGLTVEESMVQIEPRE-EET------- 155 (406)
T ss_pred HHHHHHHHhcC----Cc-CCccEEEecCCCC-ChHHHHHHHHH--------HhcCCCcccceEEeccCC-CCc-------
Confidence 99998876521 01 1123455544454 43222111000 0000011 1222211 010
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccC
Q psy8199 402 EIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAE 481 (965)
Q Consensus 402 ~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~ 481 (965)
.+++++++.++...+++++|+++. +++.+|.+.| +++|.++|+++|+++++|++|+ +|.. .+..+.+
T Consensus 156 ----~~~~~l~~~~~~~~~~t~lv~~~~-v~~~tG~~~~----~~~i~~~~~~~g~~~~vD~aq~-~G~~--~id~~~~- 222 (406)
T TIGR01814 156 ----LRLEDILDTIEKNGDDIAVILLSG-VQYYTGQLFD----MAAITRAAHAKGALVGFDLAHA-VGNV--PLDLHDW- 222 (406)
T ss_pred ----cCHHHHHHHHHhcCCCeEEEEEec-cccccceecC----HHHHHHHHHHcCCEEEEEcccc-cCCc--ccccccC-
Confidence 256777777765456788999999 8999999998 9999999999999999999997 5533 2233333
Q ss_pred CCcceeee--ccccCCCcccceeeeecHHHHHhhhcc--C---Cccc--ccccCC----------CCCCHHHHHHHHHHH
Q psy8199 482 IWPDFLCL--SKGITGGYLPLSLVMTTDKIYNSIYYK--N---NINI--FLHSHS----------YSGNPLACCAALATL 542 (965)
Q Consensus 482 ~~pDivt~--sK~l~gG~~pig~v~~~~~i~~~~~~~--~---~~~~--~~~~~t----------~~~~~~~~aaa~a~L 542 (965)
.+|++++ .|.|.||. . |+++.+++....+... + .... +....+ .+.|..++++..++|
T Consensus 223 -gvD~~~~s~hK~l~g~p-G-~~l~v~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al 299 (406)
T TIGR01814 223 -GVDFACWCTYKYLNAGP-G-AGAFVHEKHAHTERPRLAGWWGHARPTRFKMDNTLGLIPCGFRISNPPILSVAALRGSL 299 (406)
T ss_pred -CCCEEEEcCccccCCCC-C-eEEEEehhhhhhcCCCCCcccCCCCccccccccccCCCccceeeCCccHHHHHHHHHHH
Confidence 4677765 58887763 3 4444444333222110 0 0000 000001 123556788888899
Q ss_pred HHHhc---ccHHHHHHHHHHHHHHHHHcccC-CCceeee-----eceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcE
Q psy8199 543 EIFNK---DNILQRISQDMKKITKALTSLIT-HPKIINF-----RQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELL 613 (965)
Q Consensus 543 ~~~~~---~~~~~~~~~~~~~l~~~L~~l~~-~~~i~~v-----~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~ 613 (965)
+.+.+ +...++.+.+.+++++.|+++.. .+++..+ ...+.++.+.+. .+ ...+.+.|.++||+
T Consensus 300 ~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~i~~~~~~~~r~~~v~~~~~-~~-------~~~~~~~L~~~gi~ 371 (406)
T TIGR01814 300 DIFDQAGMEALRKKSLLLTDYLEELIKARCGGPPVLTIITPRDHAQRGCQLSLTHP-VP-------GKAVFQALIKRGVI 371 (406)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEeCCCChhhcCCeEEEEec-CC-------HHHHHHHHHHCCEE
Confidence 98855 34566777777778777765411 2233211 123455666542 11 34577888899998
Q ss_pred EeecC-CEEEEeC-CcccCHHHHHHHHHhhhcc
Q psy8199 614 LRPIG-NTVYLMP-PYILNKNEIQHMTSAIFQT 644 (965)
Q Consensus 614 ~~~~~-~~lR~~p-~~~~t~~~i~~~~~~l~~~ 644 (965)
+...+ +.+|++| ++..++++++.+++++.+.
T Consensus 372 v~~~~~~~iRiS~~~~~nt~~did~l~~~l~~~ 404 (406)
T TIGR01814 372 GDKREPSVIRVAPVPLYNTFVDVYDAVNVLEEI 404 (406)
T ss_pred EeccCCCeEEEechhccCCHHHHHHHHHHHHHH
Confidence 87543 6899999 7899999999999988653
|
This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen. |
| >TIGR02006 IscS cysteine desulfurase IscS | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.5e-15 Score=171.36 Aligned_cols=328 Identities=12% Similarity=0.131 Sum_probs=196.8
Q ss_pred cccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCC-------CcHHHHHHHHHHHhhcCCCCCeEEEcCChhHH
Q psy8199 254 KRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNL-------THKPVIKLSEKLSSLTQYKLGHCFYGSDGASA 326 (965)
Q Consensus 254 ~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~-------~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA 326 (965)
+.|||..+.. ..++.+.+++.+.+..... ..... ..+...++.+.++++++.+.++++|++|||+|
T Consensus 4 ~~yld~aa~~------~~~~~v~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~v~~~~g~t~a 76 (402)
T TIGR02006 4 PIYLDYAATT------PVDPRVAEKMMPYLTEKFG-NPASRSHSFGWEAEEAVENARNQVAELIGADSREIVFTSGATES 76 (402)
T ss_pred cEEeeCCcCC------CCCHHHHHHHHHHHHhcCC-CCChhhhHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCCHHHH
Confidence 4689987653 2589999999887754211 11111 12345667788999998777899999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHH
Q psy8199 327 VEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARC 406 (965)
Q Consensus 327 ~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (965)
++.+++.+..... .++++|++.... |.+......... .....+..+|.... +. .
T Consensus 77 ~~~~l~~l~~~~~----~~g~~Vi~~~~~-h~s~~~~~~~~~---------~~g~~v~~v~~~~~-~~-----------~ 130 (402)
T TIGR02006 77 NNLAIKGIAHFYK----SKGNHIITSKTE-HKAVLDTCRYLE---------REGFEVTYLPPKSN-GL-----------I 130 (402)
T ss_pred HHHHHHHHHHhhc----CCCCEEEECCCc-cHHHHHHHHHHH---------hcCCEEEEEccCCC-Cc-----------C
Confidence 9999887653210 244667766654 443222211000 00113344443321 11 2
Q ss_pred HHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcce
Q psy8199 407 AIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDF 486 (965)
Q Consensus 407 d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDi 486 (965)
|++++++++. +++.+|++.. +++++|.+.+ +++|.++|+++|+++|+|++|+ +|.. .++..+..+|+
T Consensus 131 d~~~l~~~l~---~~~~lv~v~~-~~n~tG~~~~----~~~I~~l~~~~g~~livD~a~a-~g~~----~~~~~~~~~D~ 197 (402)
T TIGR02006 131 DLEELKAAIR---DDTILVSIMH-VNNEIGVIQD----IAAIGEICRERKVFFHVDAAQS-VGKI----PINVNELKVDL 197 (402)
T ss_pred CHHHHHHhcC---CCCEEEEEEC-CCcCceeccc----HHHHHHHHHHcCCEEEEEcchh-cCCc----ccCccccCCCE
Confidence 6788888775 3456777777 7999999887 8999999999999999999996 5432 22233456899
Q ss_pred eeec--cccCCCcccceeeeecHHHHHhhhc---cCCc-ccccccCCCCCCHHHHHHHHHHHHHHhc--ccHHHHHHHHH
Q psy8199 487 LCLS--KGITGGYLPLSLVMTTDKIYNSIYY---KNNI-NIFLHSHSYSGNPLACCAALATLEIFNK--DNILQRISQDM 558 (965)
Q Consensus 487 vt~s--K~l~gG~~pig~v~~~~~i~~~~~~---~~~~-~~~~~~~t~~~~~~~~aaa~a~L~~~~~--~~~~~~~~~~~ 558 (965)
+++| |.++ . ..+|+++.+++....+.. ++.. +.+. ..+.+..++++..++|+.+.+ +...++.+++.
T Consensus 198 ~~~s~~K~~g-p-~G~G~l~~~~~~~~~~~~~~~g~~~~~~~~---~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~ 272 (402)
T TIGR02006 198 MSISGHKIYG-P-KGIGALYVRRKPRVRLEALIHGGGHERGMR---SGTLPTHQIVGMGEAFRIAKEEMAQDTAHVLALR 272 (402)
T ss_pred EEEehhhhcC-C-CceEEEEEccCCCCCCCceecCCCccCCcc---CCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 9998 9543 2 458888888654432221 1000 0011 113355566666688877653 23456666777
Q ss_pred HHHHHHHHcccCCCceeee-----ecee-EEEEEEEeecCccchhhHHHHHHHHHHHcCcEEee----------------
Q psy8199 559 KKITKALTSLITHPKIINF-----RQKG-MIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRP---------------- 616 (965)
Q Consensus 559 ~~l~~~L~~l~~~~~i~~v-----~g~G-~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~---------------- 616 (965)
+++++.|+++ +++... +..+ ..+.+... + .+.+...+ +|+.++.
T Consensus 273 ~~l~~~l~~~---~~v~~~~~~~~~~p~~~~v~f~~~--~-------~~~~~~~l--~~i~v~~G~~c~~~~~~~~~~l~ 338 (402)
T TIGR02006 273 DRLLNGIKSI---EEVYLNGDLEHRVPGNLNVSFNYV--E-------GESLIMAL--KDLAVSSGSACTSASLEPSYVLR 338 (402)
T ss_pred HHHHHHHhcC---CCEEEeCCccccCCCeEEEEEeCc--C-------HHHHHHhc--CCEEEechhhcCCCCCCccHHHH
Confidence 7777777654 333211 1111 12222211 1 11222222 2443321
Q ss_pred --------cCCEEEEeCCcccCHHHHHHHHHhhhcccc
Q psy8199 617 --------IGNTVYLMPPYILNKNEIQHMTSAIFQTFN 646 (965)
Q Consensus 617 --------~~~~lR~~p~~~~t~~~i~~~~~~l~~~~~ 646 (965)
..+.+|+++....|++|++++++.+.+...
T Consensus 339 ~lg~~~~~~~~~vR~S~~~~~t~edid~l~~~l~~~~~ 376 (402)
T TIGR02006 339 ALGINDELAHSSIRFTIGRFTTEEEIDYAVKLVKSAID 376 (402)
T ss_pred HcCCChhhcCceEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence 136899999999999999999999876544
|
This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors. |
| >PRK09275 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.9e-15 Score=172.88 Aligned_cols=334 Identities=14% Similarity=0.083 Sum_probs=186.4
Q ss_pred CCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhh-cCC---C--CCeEEEcCChhHHHHHHHHHHHHHHHhcC
Q psy8199 269 GHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSL-TQY---K--LGHCFYGSDGASAVEVALKMSFHYWYNKG 342 (965)
Q Consensus 269 Gh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~-~~~---~--~~~v~~~~sGseA~~~Al~~a~~~~~~~g 342 (965)
|...|+.+..+.+++.. .+|+.+.+..+.++++++.+.+. ... . .++|+.|+|+++|+..++....... .
T Consensus 111 ~~~~~~~v~e~~~~~~~-~~Y~~~~g~~~lreaia~~~~~~~~~~~~~~~~~~~I~vT~Ga~~al~~~~~aL~~~~-l-- 186 (527)
T PRK09275 111 GFDADEFVYELVDGIIG-DNYPVPDRMLKHTEKIVKDYLRQEMCGGRPPKGEFDLFAVEGGTAAMCYIFDSLKENG-L-- 186 (527)
T ss_pred CCCCCHHHHHHHHHHhc-CCCCCCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHHHHHHHHHHhhhh-c--
Confidence 44545544335565533 34555667777788888755432 111 1 3489999999999999888521100 0
Q ss_pred CCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCC-CCCCCCCCCChhHHHHHHHHHHHHHHHhCCCc
Q psy8199 343 FLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTP-DSRNINKGNSANEIARCAIFDLEILLKKNHNK 421 (965)
Q Consensus 343 ~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~ 421 (965)
-.++++|++.+|+|..+...+...+. ....+.++.. ..... .|+++|++++. ++
T Consensus 187 l~pGD~Vlv~~P~y~~Y~~~~~l~g~-----------~~~~v~v~~~~~~~f~-----------~d~~~l~~~~~---~~ 241 (527)
T PRK09275 187 LKAGDKIALMTPIFTPYLEIPELPRY-----------DLEVVHINADEENEWQ-----------YPDSELEKLRD---PS 241 (527)
T ss_pred CCCCCEEEEeCCChHHHHHHHHHcCC-----------CeEEEEeecCcccCCC-----------CCHHHHHhhcC---CC
Confidence 03678999999999887433222211 0111222211 11111 25677777664 34
Q ss_pred EEEEE-EccccccCCCcccCChHHHHHHHHHHHh--cCCeEEEeccccCCCcccccccccccCCCc-cee---eeccccC
Q psy8199 422 IAAII-IEPLVQCAGGMIMYDSIYLKLVREICNN--YNIHLIADEIAVGCGRTGKFFACEHAEIWP-DFL---CLSKGIT 494 (965)
Q Consensus 422 ~aaii-~ep~v~~~~G~~~~~~~~l~~l~~l~~~--~g~llI~DEv~tg~gr~G~~~~~~~~~~~p-Div---t~sK~l~ 494 (965)
+.+|+ ++| +|++|.+. +++.+++|.++|++ +|+++|+||+|..|.. .+... ....| .++ +|||.++
T Consensus 242 tkai~l~nP--~NPTG~v~-s~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~--~~~s~--~~~~~~~~I~v~SfSK~f~ 314 (527)
T PRK09275 242 IKALFLVNP--SNPPSVAM-SDESLEKIADIVNEKRPDLMIITDDVYGTFVD--DFRSL--FAVLPYNTILVYSFSKYFG 314 (527)
T ss_pred CCEEEEeCC--cCCcCCCC-CHHHHHHHHHHHHhcCCCcEEEECCCChhhcc--cccCH--HHhCCCCEEEEeehhhhcc
Confidence 44444 556 89999766 78889999999965 5999999999987742 21111 11123 333 6899775
Q ss_pred CCcccceeeeecHH-----HHHhhhcc--------------------------CCcccccccCCCCCCHHHHHH-HH---
Q psy8199 495 GGYLPLSLVMTTDK-----IYNSIYYK--------------------------NNINIFLHSHSYSGNPLACCA-AL--- 539 (965)
Q Consensus 495 gG~~pig~v~~~~~-----i~~~~~~~--------------------------~~~~~~~~~~t~~~~~~~~aa-a~--- 539 (965)
-.+|++|+++++++ +++.+... ...+.+...+|.+.+.+.|.+ |+
T Consensus 315 mtG~RlG~i~~~~~~v~~~~i~~l~~~~~~~~~~ry~~~~~~p~~~~fidrlvad~~~v~~~~t~~~s~p~Q~a~al~~~ 394 (527)
T PRK09275 315 ATGWRLGVIALHEDNVFDKLIAKLPEEKKKELDKRYSSLTTDPEKLKFIDRLVADSRQVALNHTAGLSTPQQVQMALFSL 394 (527)
T ss_pred CcHhHHhhhhcCchhHHHHHHHhccHHHHHHHHhhhhhccCCcchhhhHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHH
Confidence 32299999999875 33322000 000123334566666666665 32
Q ss_pred -HHHHHHhccc----HHHHHHHHHHHHHHHHHcccCCCceeeeeceeEEEEEEEeecCcc--chhh---------HHHHH
Q psy8199 540 -ATLEIFNKDN----ILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPE--QIET---------FSKKF 603 (965)
Q Consensus 540 -a~L~~~~~~~----~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~--~~~~---------~~~~~ 603 (965)
+.|+. .+. ..+.++++.+.+.+.| .. .+...++.|.|+.+.-...-.. .... ...++
T Consensus 395 ~all~~--~~~~~~~~~~~~~~Rr~~l~~~L----g~-~~~~~~p~g~fY~~~di~~~~~~~~g~~f~~~l~~~~~~~~f 467 (527)
T PRK09275 395 FALLDE--EDAYKKAMKDIIRRRYKALYEGL----GL-PEPEDPNNAAYYTLIDLEEWAEKNYGKEFADYLKKNYSPVDL 467 (527)
T ss_pred HHHHhC--chHHHHHHHHHHHHHHHHHHHHc----CC-CCcCCCCCeeEEEEEEhHHhhhhccCchhhhhhhccCCHHHH
Confidence 22331 122 2333444444443333 11 1222356777666543211000 0000 12345
Q ss_pred HHHHH-HcCcEEeecC------CEEEEeCCcc-cCHHHHHHHHHhhhccccc
Q psy8199 604 FVAAL-KNELLLRPIG------NTVYLMPPYI-LNKNEIQHMTSAIFQTFNE 647 (965)
Q Consensus 604 ~~~l~-~~Gi~~~~~~------~~lR~~p~~~-~t~~~i~~~~~~l~~~~~~ 647 (965)
+.+|. +.||.+.|+. +++|++ ++ .+++++.++.+++.+.+.+
T Consensus 468 ~~~Ll~e~gV~v~PG~~Fg~~~~~vRis--~a~~~~~~~~~~~~rl~~~l~~ 517 (527)
T PRK09275 468 LFRLAEETGVVLLPGGGFGGPEWSVRVS--LANLNEEDYAKIGKAIRKLLDE 517 (527)
T ss_pred HHHHHhcCCEEEeCchhhCCCCCeEEEE--EecCCHHHHHHHHHHHHHHHHH
Confidence 45554 6799998852 579999 66 5788999999888766543
|
|
| >PRK13347 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=9.3e-16 Score=175.49 Aligned_cols=200 Identities=13% Similarity=0.204 Sum_probs=152.2
Q ss_pred CCCCCCCCCCCCCCcCCCCcccccCCCHHHHHHHHHHHHH-----CCCCEEEEeeccCCCCcccHHHHHHHHHHHHhc--
Q psy8199 690 GGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKS-----DGATRFCMGAAWRELKDRDLDNIENMICEVKKI-- 762 (965)
Q Consensus 690 ~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~-----~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~-- 762 (965)
..|+.+|.||.+.+.......... .-.+.++++++...+ .++..++|.||.. ...+.+++.++++.+++.
T Consensus 58 PfC~~~C~yC~~~~~~~~~~~~~~-~y~~~L~~Ei~~~~~~~~~~~~v~~i~fgGGTP--s~l~~~~l~~ll~~i~~~~~ 134 (453)
T PRK13347 58 PFCRSLCWFCGCNTIITQRDAPVE-AYVAALIREIRLVAASLPQRRRVSQLHWGGGTP--TILNPDQFERLMAALRDAFD 134 (453)
T ss_pred CCccccCCCCCCcCcCccccchHH-HHHHHHHHHHHHHHHhcCCCCeEEEEEEcCccc--ccCCHHHHHHHHHHHHHhCC
Confidence 569999999998753221100000 114666666664433 2567788877743 334567777777777652
Q ss_pred -----CcEeEEecCCCCHHHHHHHHHhCCCeEeccCCC-CHHHHhcccCCCCHHHHHHHHHHHHHcCCc-eeeeEEEec-
Q psy8199 763 -----GLETCLTLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGIN-ICCGGIIGL- 834 (965)
Q Consensus 763 -----~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~~es-~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~-v~~~~i~Gl- 834 (965)
.+.+.+++..++++.++.|+++|++++++|+|| ++++++.+++.++.++..++++.++++|+. ++..+|+|+
T Consensus 135 ~~~~~e~tie~~p~~lt~e~l~~L~~~G~~rvsiGvQS~~~~vl~~l~R~~~~~~~~~ai~~lr~~G~~~v~~dli~GlP 214 (453)
T PRK13347 135 FAPEAEIAVEIDPRTVTAEMLQALAALGFNRASFGVQDFDPQVQKAINRIQPEEMVARAVELLRAAGFESINFDLIYGLP 214 (453)
T ss_pred CCCCceEEEEeccccCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEEeCC
Confidence 234566888999999999999999999999999 999999999999999999999999999996 899999999
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCC-----CCCCCCCCHHHHHHHHHHHHHHCC
Q psy8199 835 SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTP-----LYGSSILDPLEFIRTIAVARITMP 894 (965)
Q Consensus 835 ~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~-----l~~~~~~~~~~~~~~ia~~R~~lp 894 (965)
++|.+++.++++.+.+++ ++.+.++.+...|++. ......++.++.+++...+...|.
T Consensus 215 gqt~e~~~~tl~~~~~l~--p~~i~~y~l~~~p~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~L~ 277 (453)
T PRK13347 215 HQTVESFRETLDKVIALS--PDRIAVFGYAHVPSRRKNQRLIDEAALPDAEERLRQARAVADRLL 277 (453)
T ss_pred CCCHHHHHHHHHHHHhcC--CCEEEEeccccccchhhHHhcCCccCCcCHHHHHHHHHHHHHHHH
Confidence 699999999999999999 9999998886544421 122344677787888777777663
|
|
| >PRK07908 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=4e-15 Score=166.55 Aligned_cols=308 Identities=11% Similarity=0.066 Sum_probs=188.8
Q ss_pred CcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHH
Q psy8199 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALK 332 (965)
Q Consensus 253 G~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~ 332 (965)
+..++|+..+. ++++ .++.+.+++.+.+.....|.. .....++.+.++++++...+++++|+|+++|+..+++
T Consensus 21 ~~~~~~l~~~~--~~~~-~~~~~~~~~~~~~~~~~~Y~~----~~g~~~lr~aia~~~~~~~~~I~it~Ga~~al~~~~~ 93 (349)
T PRK07908 21 GPGLLDFAVNV--RHDT-PPEWLRERLAARLGDLAAYPS----TEDERRARAAVAARHGRTPDEVLLLAGAAEGFALLAR 93 (349)
T ss_pred CCCeEEecCCC--CCCC-CCHHHHHHHHHHhhHhhcCCC----ccchHHHHHHHHHHhCcChhhEEECCCHHHHHHHHHh
Confidence 56799998763 3344 578899999988765422221 2234566677777777778899999999999988776
Q ss_pred HHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHH
Q psy8199 333 MSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLE 412 (965)
Q Consensus 333 ~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le 412 (965)
. .+ +.+++..++|.++...... .| ..+..+|...... .|++++
T Consensus 94 -l---------~~-~~viv~~P~y~~~~~~~~~-~G------------~~i~~v~~~~~~~------------~d~~~l- 136 (349)
T PRK07908 94 -L---------RP-RRAAVVHPSFTEPEAALRA-AG------------IPVHRVVLDPPFR------------LDPAAV- 136 (349)
T ss_pred -c---------CC-CeEEEeCCCChHHHHHHHH-cC------------CEEEeeccCcccC------------cChhHh-
Confidence 2 13 4577788888665322111 11 1222333221110 123322
Q ss_pred HHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCccee---ee
Q psy8199 413 ILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL---CL 489 (965)
Q Consensus 413 ~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDiv---t~ 489 (965)
.+ ...+.++++| +|++|.+.+ .++|.++|+ ++.++|+||+|..|. .+........+ .++++ +|
T Consensus 137 ---~~--~~~~i~l~np--~NPTG~~~~----~~~l~~l~~-~~~~iIvDe~y~~~~-~~~~~~l~~~~-~~~~i~i~S~ 202 (349)
T PRK07908 137 ---PD--DADLVVIGNP--TNPTSVLHP----AEQLLALRR-PGRILVVDEAFADAV-PGEPESLAGDD-LPGVLVLRSL 202 (349)
T ss_pred ---cc--CCCEEEEcCC--CCCCCCCcC----HHHHHHHHh-cCCEEEEECcchhhc-cCCcccccccc-CCCEEEEeec
Confidence 21 1224445566 899999886 346777786 478899999998762 23322221122 23544 57
Q ss_pred ccccC-CCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHH--Hh-cccHHHHHHHHHHHHHHHH
Q psy8199 490 SKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEI--FN-KDNILQRISQDMKKITKAL 565 (965)
Q Consensus 490 sK~l~-gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~--~~-~~~~~~~~~~~~~~l~~~L 565 (965)
||.++ .| +++|++++++++++.+... ...+..+++.++++.+.++- .. -+...++++++.+++.+.|
T Consensus 203 SK~~~l~G-lRiG~~~~~~~~~~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L 273 (349)
T PRK07908 203 TKTWSLAG-LRVGYALGAPDVLARLTRG--------RAHWPVGTLQLEAIAACCAPRAVAEAAADAARLAADRAEMVAGL 273 (349)
T ss_pred ccccCCcc-ceeeeeecCHHHHHHHHhc--------CCCCCccHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 99886 55 8999999999998887651 12244556666655554430 00 0123455555666666666
Q ss_pred HcccCCCceeeee-ceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec-------CCEEEEeCCcccCHHHHHHH
Q psy8199 566 TSLITHPKIINFR-QKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-------GNTVYLMPPYILNKNEIQHM 637 (965)
Q Consensus 566 ~~l~~~~~i~~v~-g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-------~~~lR~~p~~~~t~~~i~~~ 637 (965)
+++ ++.... ..|.++++.+. + ...+.+.|.++||.+.|+ .+++|++. .++++++++
T Consensus 274 ~~~----~~~~~~p~~g~~~~~~~~--~-------~~~~~~~l~~~gI~v~~g~~f~~~~~~~vRis~---~~~~~~~~l 337 (349)
T PRK07908 274 RAV----GARVVDPAAAPFVLVRVP--D-------AELLRKRLRERGIAVRRGDTFPGLDPDYLRLAV---RPRAEVPVL 337 (349)
T ss_pred HhC----CcEeccCCCceEEEEECC--c-------HHHHHHHHHhCCEEEEECCCCCCCCCCeEEEEe---CCCccHHHH
Confidence 543 344333 45777777653 1 245777888999999873 26899994 577788888
Q ss_pred HHhhhc
Q psy8199 638 TSAIFQ 643 (965)
Q Consensus 638 ~~~l~~ 643 (965)
++++..
T Consensus 338 ~~al~~ 343 (349)
T PRK07908 338 VQALAE 343 (349)
T ss_pred HHHHHH
Confidence 887764
|
|
| >TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.8e-15 Score=166.94 Aligned_cols=330 Identities=15% Similarity=0.142 Sum_probs=201.5
Q ss_pred cccccccchhccCCCCCHHHHHHHHHHHhhcc-ccccCCCC-----cHHHHHHHHHHHhhcCCCC-CeEEEcCChhHHHH
Q psy8199 256 YLDAISSWWVNLFGHSNSYINKALKNQLNKLE-HVMLSNLT-----HKPVIKLSEKLSSLTQYKL-GHCFYGSDGASAVE 328 (965)
Q Consensus 256 ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~-~~~~~~~~-----~~~~~~la~~l~~~~~~~~-~~v~~~~sGseA~~ 328 (965)
|||..++. ...++.+.+++.+.++... ......+. .+...++.+.++++++... ++++|++|+++|+.
T Consensus 2 yld~a~~~-----~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~g~t~al~ 76 (376)
T TIGR01977 2 YFDNAATT-----YPKPDEVYEAMADFYKNYGGSPGRGRYRLALRASREVEETRQLLAKLFNAPSSAHVVFTNNATTALN 76 (376)
T ss_pred CccCcccC-----CCCCHHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHHHHHHHHHHhCcCCCCeEEEeCCHHHHHH
Confidence 67765431 1146789999988877642 11111122 2556788889999987543 48999999999999
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHH
Q psy8199 329 VALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAI 408 (965)
Q Consensus 329 ~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 408 (965)
.++.... .++++|++....|++......... ......+..++.... + ..|+
T Consensus 77 ~~~~~~~--------~~gd~vl~~~~~~~~~~~~~~~~~---------~~~g~~~~~v~~~~~-~-----------~~d~ 127 (376)
T TIGR01977 77 IALKGLL--------KEGDHVITTPMEHNSVARPLECLK---------EQIGVEITIVKCDNE-G-----------LISP 127 (376)
T ss_pred HHHHhcc--------CCCCEEEECcchhhHHHHHHHHHH---------HHcCcEEEEEecCCC-C-----------CcCH
Confidence 8887532 256778887766544311000000 000112333333211 1 1367
Q ss_pred HHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcceee
Q psy8199 409 FDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLC 488 (965)
Q Consensus 409 ~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt 488 (965)
+++++++. +++.+|++.. +++++|.+.+ +++|.++|+++|+++|+|++++ +|... +..+ ...+|+++
T Consensus 128 ~~l~~~~~---~~~~~v~~~~-~~n~tG~~~~----~~~i~~l~~~~~~~livD~a~~-~g~~~--~~~~--~~~~D~~~ 194 (376)
T TIGR01977 128 ERIKRAIK---TNTKLIVVSH-ASNVTGTILP----IEEIGELAQENGIFFILDAAQT-AGVIP--IDMT--ELAIDMLA 194 (376)
T ss_pred HHHHHhcC---CCCeEEEEEC-CCCCccccCC----HHHHHHHHHHcCCEEEEEhhhc-cCccC--CCch--hcCCCEEE
Confidence 88888874 3456666666 6899999887 8899999999999999999996 55331 1122 23478886
Q ss_pred ec--cccCCCcccceeeeecHHH-HHhhhccCCc-cc--cc------c-cCCCCCCHHHHHHHHHHHHHHhcc---cHHH
Q psy8199 489 LS--KGITGGYLPLSLVMTTDKI-YNSIYYKNNI-NI--FL------H-SHSYSGNPLACCAALATLEIFNKD---NILQ 552 (965)
Q Consensus 489 ~s--K~l~gG~~pig~v~~~~~i-~~~~~~~~~~-~~--~~------~-~~t~~~~~~~~aaa~a~L~~~~~~---~~~~ 552 (965)
+| |.++|. ...|+++.+++. +..+..++.. .. +. . ....+.+..++++..++|+.+.+. .+.+
T Consensus 195 ~s~~K~l~~p-~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~ 273 (376)
T TIGR01977 195 FTGHKGLLGP-QGTGGLYIREGIKLKPLKSGGTGSHSALIDQPSELPDRFESGTLNTPGIAGLNAGIKFIEKIGIANIAK 273 (376)
T ss_pred ecccccccCC-CCceEEEEcCCcCcCceecCCCccccccccccccchhhccCCCCCHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 65 888763 245666665543 2222211000 00 00 0 001134566677777888877653 3567
Q ss_pred HHHHHHHHHHHHHHcccCCCceeee-----eceeEEEEEEEeecCccchhhHHHHHHHHHHHc-CcEEeec---------
Q psy8199 553 RISQDMKKITKALTSLITHPKIINF-----RQKGMIWAFDVIIEDPEQIETFSKKFFVAALKN-ELLLRPI--------- 617 (965)
Q Consensus 553 ~~~~~~~~l~~~L~~l~~~~~i~~v-----~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~-Gi~~~~~--------- 617 (965)
+.+++.+++.+.|.++ +++..+ ...+.++.+.+. + . ....+.+.|.++ ||.++.+
T Consensus 274 ~~~~l~~~~~~~l~~~---~~~~~~~~~~~~~~~~~v~~~~~--~----~-~~~~~~~~L~~~~gi~v~~g~~~~~~~~~ 343 (376)
T TIGR01977 274 KECMLTEKLLNGLREI---NKVKIYGPADPANRVGVVSFTVE--G----I-DSEEVADILDEKFDIATRTGLHCAPLAHK 343 (376)
T ss_pred HHHHHHHHHHHHHhcC---CCeEEeCCCCccccCCeEEEEEC--C----C-CHHHHHHHHhccCCEEEEcccccchHHHH
Confidence 7778888888888654 333211 113456666553 1 1 134677888877 8887542
Q ss_pred ------CCEEEEeCCcccCHHHHHHHHHhhhc
Q psy8199 618 ------GNTVYLMPPYILNKNEIQHMTSAIFQ 643 (965)
Q Consensus 618 ------~~~lR~~p~~~~t~~~i~~~~~~l~~ 643 (965)
.+.+|+++...+|+++++.+++++.+
T Consensus 344 ~~g~~~~~~iRis~~~~~t~~dv~~~~~~l~~ 375 (376)
T TIGR01977 344 TIGTFATGTIRLSLGYFNTEEEIEKLLEALSE 375 (376)
T ss_pred HhCCCCCCeEEEecCCCCCHHHHHHHHHHHhh
Confidence 26899999999999999999998764
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown. |
| >COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.1e-15 Score=156.15 Aligned_cols=333 Identities=13% Similarity=0.113 Sum_probs=200.8
Q ss_pred ccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHH
Q psy8199 257 LDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFH 336 (965)
Q Consensus 257 lD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~ 336 (965)
+||.|.++. | .+|++.+|+.++-... ...++..+...++.++++++++ ...++|++|||.||..||....+
T Consensus 2 ~~f~SDn~~---g-~~~~m~eam~~a~~~~---~~~YG~D~~~~~~e~~~ae~~g--~~a~~Fv~sGT~aN~lal~~~~~ 72 (342)
T COG2008 2 IDFRSDNVA---G-PTPEMREALAAANAVG---DDVYGEDPTTNALEQRIAELFG--KEAALFVPSGTQANQLALAAHCQ 72 (342)
T ss_pred CccccCccC---C-CCHHHHHHHHhccccC---CCCCCCCHHHHHHHHHHHHHhC--CceEEEecCccHHHHHHHHHhcC
Confidence 577776553 2 5899999998764321 2234667888899999999995 49999999999999999997753
Q ss_pred HHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHH
Q psy8199 337 YWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLK 416 (965)
Q Consensus 337 ~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~ 416 (965)
+...+| ....-|-++..+-.. .+..+...++..+..... .+++++++.+.
T Consensus 73 --------~~~~vi-~~~~aHi~~~E~Ga~-----------~~~~~~~~~~~~~g~~Gk----------lt~e~v~~~i~ 122 (342)
T COG2008 73 --------PGESVI-CHETAHIYTDECGAP-----------EFFGGGQKLPIVPGADGK----------LTPEDVEAAIR 122 (342)
T ss_pred --------CCCeEE-EeccccceecccCcH-----------HHHcCCceeccCCCCCCC----------cCHHHHHHhhc
Confidence 334444 444556654322110 011122233322211111 37888888776
Q ss_pred h---CCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcceeeecccc
Q psy8199 417 K---NHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGI 493 (965)
Q Consensus 417 ~---~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~sK~l 493 (965)
. +...+..++.|. -.+++|.+ +|.++|++|.++|++||+.|++|-+.-.-.-....-+...+.-.-|+++|+-.-
T Consensus 123 ~~d~~~~~~~~~~~e~-~~te~GtV-y~l~el~~i~~~~k~~~l~LHmDGAR~~nA~valg~~~~~~~~~~D~v~~~~tK 200 (342)
T COG2008 123 PDDIHHAPTPLAVLEN-TATEGGTV-YPLDELEAISAVCKEHGLPLHMDGARLANALVALGVALKTIKSYVDSVSFCLTK 200 (342)
T ss_pred CCCcccCCCceEEEee-ccCCCcee-cCHHHHHHHHHHHHHhCCceeechHHHHHHHHHcCCCHHHHHhhCCEEEEeccc
Confidence 4 233455555555 35566765 588889999999999999999996431000000000111122235777654333
Q ss_pred CCCcccceeee-ecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcccCCC
Q psy8199 494 TGGYLPLSLVM-TTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHP 572 (965)
Q Consensus 494 ~gG~~pig~v~-~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~ 572 (965)
+|| +|+|+++ ++.++++.+..-. -+.|+-+.-..+-.++++..|+.---.....+..++.++|.+++++. |
T Consensus 201 ~g~-~~~gAiv~gn~~~~~~a~~~r----K~~Ggl~~k~r~laA~~~~~l~~~~~~~~~~Han~mA~~La~~~~~~---~ 272 (342)
T COG2008 201 GGG-APVGAIVFGNRDFAKRARRWR----KRAGGLMRKARFLAAQGLYALEDDVWRLAADHANAMAARLAEGLEAK---P 272 (342)
T ss_pred CCc-ceeeeEEEcCHHHHHHHHHHH----HHhcccHhhhhHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhhhhc---C
Confidence 344 6888765 5777776664310 13455555555555666666642100112233444477888877644 4
Q ss_pred cee-eeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecCCEEEEeCCcccCHHHHHHHHHhhhc
Q psy8199 573 KII-NFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQ 643 (965)
Q Consensus 573 ~i~-~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~lR~~p~~~~t~~~i~~~~~~l~~ 643 (965)
++. ..+.+.+++.+.+. + + ..........+...|++..+.+..+||..++..+++++++++..+..
T Consensus 273 G~~~~~~~~tN~vf~~l~--~--~-~i~~l~~~~~~~~~~~~~~~~~~~vRfvts~a~~~edv~~~~~~~~~ 339 (342)
T COG2008 273 GVKLAFPVETNMVFVRLP--E--S-AIEALRLAGALFYRGVLIGAHGEIVRFVTSWATSEEDVDELVAAIKA 339 (342)
T ss_pred CceeccCCcccEEEEECC--h--H-HHHHHHhhchhheeeeeccCCCceEEEEeeccCCHHHHHHHHHHHHH
Confidence 555 33368888888775 1 0 01122334456667777766545899999999999999999887764
|
|
| >cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.1e-15 Score=166.55 Aligned_cols=325 Identities=10% Similarity=0.088 Sum_probs=193.0
Q ss_pred CCCCCHHHHHHHHHHHhhcccccc-C----CCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcC
Q psy8199 268 FGHSNSYINKALKNQLNKLEHVML-S----NLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKG 342 (965)
Q Consensus 268 lGh~~p~v~~av~~~~~~~~~~~~-~----~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g 342 (965)
=|+..|++++++.+.-...+.... . ...++...++.+++++.++ .+++++++||++|+..++.....
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g--~~~i~~~~g~t~al~~~l~~~~~------ 81 (361)
T cd06452 10 GGRLTPEARKALIEWGDGYSVCDFCRGRLDEIEKPPIKDFHHDLAEFLG--MDEARVTPGAREGKFAVMHSLCE------ 81 (361)
T ss_pred CCCCCHHHHHHHHHHhcccCCccccccccccccCchHHHHHHHHHHHcC--CceEEEeCCHHHHHHHHHHHhcC------
Confidence 456788888888776533221110 1 1224567899999999996 48999999999999999887632
Q ss_pred CCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCC---
Q psy8199 343 FLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNH--- 419 (965)
Q Consensus 343 ~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~--- 419 (965)
++++|++...+|.+.. .+.... ...+..++....... ..|++++++++++..
T Consensus 82 --~gd~Vl~~~~~~~~~~-~~~~~~------------g~~~~~v~~~~~~~~----------~~d~~~l~~~l~~~~~~~ 136 (361)
T cd06452 82 --KGDWVVVDGLAHYTSY-VAAERA------------GLNVREVPNTGHPEY----------HITPEGYAEVIEEVKDEF 136 (361)
T ss_pred --CCCEEEEcCCcchHHH-HHHHhc------------CCEEEEEecCCCCCc----------ccCHHHHHHHHHHHhhcc
Confidence 5577888766654431 111111 112334443211000 136788888876421
Q ss_pred -CcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCccee--eeccccCCC
Q psy8199 420 -NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL--CLSKGITGG 496 (965)
Q Consensus 420 -~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDiv--t~sK~l~gG 496 (965)
.++.+|++.. +++++|...+ +++|.++|+++|+++|+||+|. +|.. .+....++ .|++ +++|+++++
T Consensus 137 ~~~~~lv~l~~-p~n~tG~~~~----~~~i~~~~~~~~~~vivD~a~~-~g~~--~~~~~~~~--~d~~~~s~~K~l~~~ 206 (361)
T cd06452 137 GKPPALALLTH-VDGNYGNLHD----AKKIAKVCHEYGVPLLLNGAYT-VGRM--PVSGKELG--ADFIVGSGHKSMAAS 206 (361)
T ss_pred CCCceEEEEEC-CCCCCeeecc----HHHHHHHHHHcCCeEEEECCcc-cCCc--CCCHHHcC--CCEEEecCCccccCC
Confidence 2455666655 5888998766 8999999999999999999996 4322 12222334 3555 578999766
Q ss_pred cccceeeeecHHHHHhhhccCCc----ccccccCCCCCCHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHcccCC
Q psy8199 497 YLPLSLVMTTDKIYNSIYYKNNI----NIFLHSHSYSGNPLACCAALATLEIFNK-DNILQRISQDMKKITKALTSLITH 571 (965)
Q Consensus 497 ~~pig~v~~~~~i~~~~~~~~~~----~~~~~~~t~~~~~~~~aaa~a~L~~~~~-~~~~~~~~~~~~~l~~~L~~l~~~ 571 (965)
.++|++++++++++.+...... .....++|. ++..+++++++++.+.+ -....+..++.+++.+.|+++
T Consensus 207 -~~~G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~l--- 280 (361)
T cd06452 207 -APIGVLATTEEWADIVFRTSQMFKIKEVELLGCTL--RGAPLVTLMASFPHVKERVKRWDEEVEKARWFVAELEKI--- 280 (361)
T ss_pred -CCeEEEEECHHHHHHHhccccccccceeeeecccc--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---
Confidence 4899999999998887542110 000111221 22334455556654321 112222234456777777654
Q ss_pred Cceeee---eceeEEEEEEEeecCc-cc--hhhHHHHHHHHHHHcCcEEeecC--CEEEEeCCcccCHHHHHHHHHhhhc
Q psy8199 572 PKIINF---RQKGMIWAFDVIIEDP-EQ--IETFSKKFFVAALKNELLLRPIG--NTVYLMPPYILNKNEIQHMTSAIFQ 643 (965)
Q Consensus 572 ~~i~~v---~g~G~~~~i~~~~~~~-~~--~~~~~~~~~~~l~~~Gi~~~~~~--~~lR~~p~~~~t~~~i~~~~~~l~~ 643 (965)
+++..+ .+...++.++.. .-- .. .......+.+.|+++||.+...+ +.+|++. ...++++++.+++++++
T Consensus 281 ~g~~v~~~~~~~~n~~~~~~~-~~~~~~~~~~~~~~~~~~~L~~~gI~~~~~~~~~~~ri~~-~g~~~e~~~~l~~al~~ 358 (361)
T cd06452 281 EGIKQLGEKPKNHDLMFFETP-SFDEIAKKHKRRGYFLYSELKKRGIHGIKPGLTRYFKLST-YGLTWEQVEYVVDAFKE 358 (361)
T ss_pred CCeEEECCCCCCCceEEEEcC-CcchhhhhccccchhHHHHHHHcCceEEcCCCceEEEEEe-cCCCHHHHHHHHHHHHH
Confidence 344322 244556555532 000 00 00112257888999999965432 5788885 34799999999998764
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface. |
| >KOG1368|consensus | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.8e-15 Score=149.35 Aligned_cols=324 Identities=13% Similarity=0.123 Sum_probs=213.6
Q ss_pred ccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHH
Q psy8199 255 RYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMS 334 (965)
Q Consensus 255 ~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a 334 (965)
+..|+-|-.-.. .-.++++||.++.-.- .-.+..+...+|.++.++++ +.+.-+|.+||+..|.+|++.-
T Consensus 22 ~~vDLRSDTvT~----PTdeMr~am~eA~vgD----dVyGeD~tt~rLE~~vA~l~--GKEAgLFv~SGTmgNllaIm~H 91 (384)
T KOG1368|consen 22 RSVDLRSDTVTV----PTDEMRRAMAEASVGD----DVYGEDPTTNRLEQRVAELF--GKEAGLFVPSGTMGNLLAIMVH 91 (384)
T ss_pred eccccccccccC----ChHHHHHHHhhcccCc----ccccCCccHHHHHHHHHHHh--CccceeeecccccccHHHHHHH
Confidence 567777654322 2356777777654221 12345667789999999999 5788999999999999999987
Q ss_pred HHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHH
Q psy8199 335 FHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEIL 414 (965)
Q Consensus 335 ~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~ 414 (965)
+. .++..||+ +.--|-+.+..-..+ ...++...|..+... .+-+++++|++
T Consensus 92 c~-------~rg~eii~-gd~~HI~~~E~gg~s-----------~l~gv~~~tv~~e~d----------gtm~ledIe~~ 142 (384)
T KOG1368|consen 92 CH-------QRGSEIIV-GDRAHIHRYEQGGIS-----------QLAGVHVRTVKNEND----------GTMDLEDIEAA 142 (384)
T ss_pred hc-------CCCceEEe-ccchheeehhccChh-----------hhccceeEeeeeCCC----------CeeeHHHHHHh
Confidence 65 23444544 334455432211111 112232323211111 12478999999
Q ss_pred HHhC-----CCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCC-------
Q psy8199 415 LKKN-----HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEI------- 482 (965)
Q Consensus 415 l~~~-----~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~------- 482 (965)
+... .+.+..|.+|. -+++.|....|-+|+.++.++|++||+.|++|-+.- | .+.-..|+
T Consensus 143 ir~~~GD~H~p~T~LIclEN-T~~~~Gg~vlPle~~~~v~~lak~~glkLH~DGARi-~------NAavasgV~vk~i~~ 214 (384)
T KOG1368|consen 143 IRVPKGDCHMPPTKLICLEN-THNNCGGKVLPLEELDRVKALAKRHGLKLHMDGARI-F------NAAVASGVPVKKICS 214 (384)
T ss_pred hcCCCCCccCCCceEEEeec-cccccCceEeeHHHHHHHHHHHhccCCeeecchhhh-h------hHHHHcCCCHHHHHH
Confidence 9743 34578899998 677777677799999999999999999999997532 1 12222222
Q ss_pred Ccce--eeeccccCCCccccee-eeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHH
Q psy8199 483 WPDF--LCLSKGITGGYLPLSL-VMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMK 559 (965)
Q Consensus 483 ~pDi--vt~sK~l~gG~~pig~-v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~ 559 (965)
.-|- +||||+|+. |+|. +++++++++....-. -..|+.+....+-||||+.+|+. .-..+....++..
T Consensus 215 ~fDSVsiCLSKglgA---PVGSViVG~k~FI~kA~~~R----KalGGGmRQsGvLaaaaLval~~--~~~~L~~dHk~A~ 285 (384)
T KOG1368|consen 215 AFDSVSICLSKGLGA---PVGSVIVGSKDFIDKARHFR----KALGGGMRQSGVLAAAALVALDE--NVPLLRADHKRAK 285 (384)
T ss_pred hhhhhhhhhhccCCC---CcccEEEccHHHHHHHHHHH----HHhcCchhHHHHHHHHHHHHhhc--chHHHHHHHHHHH
Confidence 2343 589999976 8885 557888876443200 12456666777888888888863 3336777778888
Q ss_pred HHHHHHHcccCCCcee-eee-ceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecC-CEEEEeCCcccCHHHHHH
Q psy8199 560 KITKALTSLITHPKII-NFR-QKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG-NTVYLMPPYILNKNEIQH 636 (965)
Q Consensus 560 ~l~~~L~~l~~~~~i~-~v~-g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~-~~lR~~p~~~~t~~~i~~ 636 (965)
.|.+.++.. +.+. .|. .+..|..+++. .. .-.++.+++.+.+.|+++.+.. ..+|+..+..+++++++.
T Consensus 286 ~lAe~~~~~---~~i~v~v~a~etNiv~~~l~-q~----~~~~~~l~~~~~k~gi~lm~~~s~r~Rivlh~Qvt~~~ve~ 357 (384)
T KOG1368|consen 286 ELAEYINTP---EEIRVEVPAVETNIVNMVLC-QA----RLTAEELCKFLEKNGILLMGGASRRIRIVLHHQVTDEDVEY 357 (384)
T ss_pred HHHHHhccc---cceeeecchhhcceeeeecc-cc----cCCHHHHHHHHHHCCeEEeeccccceEEEEEEecCHHHHHH
Confidence 888877654 2233 444 56778777764 11 1124578889999999988754 579999889999999998
Q ss_pred HHHhhh
Q psy8199 637 MTSAIF 642 (965)
Q Consensus 637 ~~~~l~ 642 (965)
+...+.
T Consensus 358 ~~~~~~ 363 (384)
T KOG1368|consen 358 VKSVLS 363 (384)
T ss_pred HHHHHH
Confidence 887774
|
|
| >PRK09249 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.6e-15 Score=173.80 Aligned_cols=200 Identities=12% Similarity=0.190 Sum_probs=154.5
Q ss_pred CCCCCCCCCCCCCCcCCCCcccccCCCHHHHHHHHHHHHH-----CCCCEEEEeeccCCCCcccHHHHHHHHHHHHhc--
Q psy8199 690 GGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKS-----DGATRFCMGAAWRELKDRDLDNIENMICEVKKI-- 762 (965)
Q Consensus 690 ~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~-----~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~-- 762 (965)
..|+.+|.||.+........ .......+.++++++...+ .++..+.|.||... ..+.+.+.++++.+++.
T Consensus 57 PFC~~~C~yC~~~~~~~~~~-~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~i~~gGGtPs--~l~~~~l~~ll~~l~~~~~ 133 (453)
T PRK09249 57 PFCRSLCYYCGCNKIITRDH-EKADPYLDALEKEIALVAALLGPGRPVSQLHWGGGTPT--FLSPEQLRRLMALLREHFN 133 (453)
T ss_pred CCccccCCCCCCcccCCCCc-chHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCcccc--cCCHHHHHHHHHHHHHhCC
Confidence 66999999999875422111 1111234667777764433 35778888777433 34567777777777652
Q ss_pred ---C--cEeEEecCCCCHHHHHHHHHhCCCeEeccCCC-CHHHHhcccCCCCHHHHHHHHHHHHHcCC-ceeeeEEEec-
Q psy8199 763 ---G--LETCLTLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGI-NICCGGIIGL- 834 (965)
Q Consensus 763 ---~--~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~~es-~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi-~v~~~~i~Gl- 834 (965)
+ +.+.+++..++++.++.|+++|++++++|+|| ++++++.+++.++.++.+++++.++++|+ .++..+|+|+
T Consensus 134 ~~~~~e~tie~np~~lt~e~l~~l~~aG~~risiGvqS~~~~~L~~l~r~~~~~~~~~ai~~l~~~G~~~v~~dli~GlP 213 (453)
T PRK09249 134 FAPDAEISIEIDPRELDLEMLDALRELGFNRLSLGVQDFDPEVQKAVNRIQPFEFTFALVEAARELGFTSINIDLIYGLP 213 (453)
T ss_pred CCCCCEEEEEecCCcCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCcEEEEEEccCC
Confidence 2 34556888899999999999999999999999 99999999999999999999999999999 8999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCC-----CCCCCCCHHHHHHHHHHHHHHCC
Q psy8199 835 SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPL-----YGSSILDPLEFIRTIAVARITMP 894 (965)
Q Consensus 835 ~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l-----~~~~~~~~~~~~~~ia~~R~~lp 894 (965)
++|.+++.++++.+.+++ ++.+.++.+.+.|++.. .....++.++..+++..+...+.
T Consensus 214 gqt~e~~~~~l~~~~~l~--~~~i~~y~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 276 (453)
T PRK09249 214 KQTPESFARTLEKVLELR--PDRLAVFNYAHVPWLFKAQRKIDEADLPSPEEKLAILQQTIETLT 276 (453)
T ss_pred CCCHHHHHHHHHHHHhcC--CCEEEEccCccchhhhhHhcCCCcccCCCHHHHHHHHHHHHHHHH
Confidence 799999999999999999 99999999886555421 12234577888888877776663
|
|
| >PLN02951 Molybderin biosynthesis protein CNX2 | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.4e-15 Score=166.46 Aligned_cols=203 Identities=17% Similarity=0.265 Sum_probs=156.6
Q ss_pred CCeEEEeEeEeeccCCCCCCCCCCCCCCcCCCCcccccCCCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHH
Q psy8199 676 ANEIELAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENM 755 (965)
Q Consensus 676 g~~~~~~~~i~~~s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~ 755 (965)
|..+. +.-+++ |..|+.+|.||....... .......++.+++.+.++.+.+.|++.|.++||+ |+...+ +.++
T Consensus 54 gr~~~-~lrisv-T~~CNlrC~yC~~~~~~~-~~~~~~~ls~eei~~~i~~~~~~Gv~~I~~tGGE-Pllr~d---l~el 126 (373)
T PLN02951 54 GRRHN-YLRISL-TERCNLRCQYCMPEEGVE-LTPKSHLLSQDEIVRLAGLFVAAGVDKIRLTGGE-PTLRKD---IEDI 126 (373)
T ss_pred CCccc-EEEEEE-cCCcCcCCCCCCCCcCCC-CCCccccCCHHHHHHHHHHHHHCCCCEEEEECCC-Ccchhh---HHHH
Confidence 44443 334677 999999999997542111 1112345899999999999999999999998765 655543 5566
Q ss_pred HHHHHhc-CcE-eE-EecCCCCHHHHHHHHHhCCCeEeccCCC-CHHHHhcccCCCCHHHHHHHHHHHHHcCC-ceeeeE
Q psy8199 756 ICEVKKI-GLE-TC-LTLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGI-NICCGG 830 (965)
Q Consensus 756 ~~~i~~~-~~~-i~-~~~~~~~~e~l~~Lk~aG~~~i~i~~es-~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi-~v~~~~ 830 (965)
++.+++. ++. +. +++|.+..+.++.|+++|++++++++++ +++.|+.+.+...+++++++++.++++|+ ++...+
T Consensus 127 i~~l~~~~gi~~i~itTNG~lL~~~~~~L~~aGld~VnISLDsl~~e~~~~itr~~~~~~vl~~I~~a~~~G~~~vkin~ 206 (373)
T PLN02951 127 CLQLSSLKGLKTLAMTTNGITLSRKLPRLKEAGLTSLNISLDTLVPAKFEFLTRRKGHDRVLESIDTAIELGYNPVKVNC 206 (373)
T ss_pred HHHHHhcCCCceEEEeeCcchHHHHHHHHHhCCCCeEEEeeccCCHHHHHHHhcCCCHHHHHHHHHHHHHcCCCcEEEEE
Confidence 6666653 543 43 3567666778999999999999999999 89999999987889999999999999998 577776
Q ss_pred EEecCCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCCCCCCCHHHHHHHHHH
Q psy8199 831 IIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAV 888 (965)
Q Consensus 831 i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~~~~~~~~~~~~~ia~ 888 (965)
++-.|.+.+++.+.++++++.+ ..+.+..|+|+.++++......+..++++.+..
T Consensus 207 vv~~g~N~~Ei~~li~~a~~~g---i~vr~ie~mP~~~~~~~~~~~~~~~ei~~~l~~ 261 (373)
T PLN02951 207 VVMRGFNDDEICDFVELTRDKP---INVRFIEFMPFDGNVWNVKKLVPYAEMMDRIEQ 261 (373)
T ss_pred EecCCCCHHHHHHHHHHHHhCC---CeEEEEEcccCCCCccccccCCCHHHHHHHHHH
Confidence 6655789999999999999987 457888899999997766556677777777654
|
|
| >TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.1e-14 Score=160.56 Aligned_cols=323 Identities=15% Similarity=0.160 Sum_probs=192.4
Q ss_pred cccccccccchhccCCCC--CHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHH
Q psy8199 254 KRYLDAISSWWVNLFGHS--NSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVAL 331 (965)
Q Consensus 254 ~~ylD~~~~~~~~~lGh~--~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al 331 (965)
+.+|+....+ .+||-+ ++++++|+.+.++.+ ....+...+++++++++++ .+++++++||++|+.+++
T Consensus 8 ~~~ina~g~~--t~~g~s~~~~~v~~a~~~~~~~~------~~~~~~~~~~~~~~a~~~g--~~~~~~~~g~t~al~~al 77 (363)
T TIGR01437 8 KKVINASGKM--TILGVSTVSDEVADAQKRGAQNY------FEIKELVNKTGEYIANLLG--VEDAVIVSSASAGIAQSV 77 (363)
T ss_pred ceEEECCcEe--ecCCCCCCCHHHHHHHHHHHhcC------CCHHHHHHHHHHHHHHhhC--CCeEEEEcCHHHHHHHHH
Confidence 3456654433 678866 899999999987653 1346778889999999985 568999999999999999
Q ss_pred HHHHHHHHhcCC-----------CCceEEEEEcCCccCCc--c-ccccccCCcCccchhcccCCCeeEecCCCCCCCCCC
Q psy8199 332 KMSFHYWYNKGF-----------LNKKKFICLQNSYHGET--L-GALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKG 397 (965)
Q Consensus 332 ~~a~~~~~~~g~-----------~~~~~vi~~~~~yHg~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (965)
+.+..- |. -.++.||+..+.|..+. . .++..+| ...++++... .
T Consensus 78 ~al~~~----Gd~~~~~~~~~s~~~~~eVi~~~~~~~~~~~~~~~~~~~~g------------~~~v~v~~~~---~--- 135 (363)
T TIGR01437 78 AAVITR----GNRYLVENLHDSKIEVNEVVLPKGHNVDYGAPVETMVRLGG------------GKVVEAGYAN---E--- 135 (363)
T ss_pred HHHhcC----CCcchhhcccccccccceEEEECccchhcCCchHHHHHhcC------------CeEEEEcCCC---C---
Confidence 977430 10 01236777665554331 0 1111111 0122222210 1
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCcEEEEE-EccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccccccc
Q psy8199 398 NSANEIARCAIFDLEILLKKNHNKIAAII-IEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFA 476 (965)
Q Consensus 398 ~~~~~~~~~d~~~le~~l~~~~~~~aaii-~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~ 476 (965)
.|++++++++.+ ++++++ +++ ..+.+|.+.+ +++|.++|++||+++|+|++|. . ... .
T Consensus 136 --------~d~~~le~ai~~---~t~ai~~v~~-~~~~~g~~~~----~~~i~~~a~~~gi~vivD~a~~-~--~~~--~ 194 (363)
T TIGR01437 136 --------CSAEQLEAAITE---KTAAILYIKS-HHCVQKSMLS----VEDAAQVAQEHNLPLIVDAAAE-E--DLQ--K 194 (363)
T ss_pred --------CCHHHHHHhcCh---hceEEEEEec-CCCCcCCcCC----HHHHHHHHHHcCCeEEEECCCC-C--chH--H
Confidence 368899998863 334444 444 3567787776 8899999999999999999996 2 111 1
Q ss_pred ccccCCCcceeeec--cccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc--ccHHH
Q psy8199 477 CEHAEIWPDFLCLS--KGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK--DNILQ 552 (965)
Q Consensus 477 ~~~~~~~pDivt~s--K~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~--~~~~~ 552 (965)
...+| .|++++| |.++| +..|++++++++++.+.... .. .+..+.....++++..++++.+.+ .+..+
T Consensus 195 ~~~~g--~D~~~~S~~K~l~g--p~~G~l~~~~~~i~~~~~~~--~~--~~~~~~~~~~~~~gl~aAl~~~~~~~~~~~~ 266 (363)
T TIGR01437 195 YYRLG--ADLVIYSGAKAIEG--PTSGLVLGKKKYIEWVKLQS--KG--IGRAMKVGKENILGLTAALEQYLSTGKESGA 266 (363)
T ss_pred HHHcC--CCEEEEeCCcccCC--CceEEEEEcHHHHHHHHhcc--CC--CcceeccCHHHHHHHHHHHHHHHccCcccHH
Confidence 11123 5888764 88876 46888888888877653210 00 001111112334455556655432 23444
Q ss_pred HHHHHHHHHHHHHHcccCCCceeee---eceeE---EEEEEEeecCccchhhHHHHHHHHHHHcC--cEEee---cCCEE
Q psy8199 553 RISQDMKKITKALTSLITHPKIINF---RQKGM---IWAFDVIIEDPEQIETFSKKFFVAALKNE--LLLRP---IGNTV 621 (965)
Q Consensus 553 ~~~~~~~~l~~~L~~l~~~~~i~~v---~g~G~---~~~i~~~~~~~~~~~~~~~~~~~~l~~~G--i~~~~---~~~~l 621 (965)
...++.+++.++|.++ |++... ...+. ...+.+. ... ..-....+.+.|.++| |.+++ ..+.+
T Consensus 267 ~~~~~~~~l~~~L~~i---~g~~~~~~~~~~~~~~~~~~v~~~-~~~--~g~~~~~l~~~L~~~~~~I~~r~~~~~~~~~ 340 (363)
T TIGR01437 267 EMVAKLTPFIEALNTL---KGVSASIVQDEAGRDIARAEIRFD-ESE--LGMTAADVVQALRQGEPAIYTRGYKANEGII 340 (363)
T ss_pred HHHHHHHHHHHHHhcC---CCeEEEEecCCCCCcCceEEEEEe-ccC--CCCCHHHHHHHHhcCCCCEEEeeeeecCCeE
Confidence 4455566777777765 444322 11111 1222232 100 0112456778888777 77774 23689
Q ss_pred EEeCCcccCHHHHHHHHHhhhcc
Q psy8199 622 YLMPPYILNKNEIQHMTSAIFQT 644 (965)
Q Consensus 622 R~~p~~~~t~~~i~~~~~~l~~~ 644 (965)
++.|+ +.+++|++.+++++.+.
T Consensus 341 ~l~~~-~~~~~e~~~~~~~l~~~ 362 (363)
T TIGR01437 341 EIDPR-SVTGGQLDIIVERIREI 362 (363)
T ss_pred EEEee-cCCHHHHHHHHHHHHHh
Confidence 99988 46799999999988653
|
This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation. |
| >PRK13034 serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.2e-14 Score=165.11 Aligned_cols=329 Identities=13% Similarity=0.062 Sum_probs=192.8
Q ss_pred ccccccccchhccCCCCCHHHHHHHHHHH-hhcccc-ccCCC--CcHHHHHHHH----HHHhhcCCCCCeE-EEcCChhH
Q psy8199 255 RYLDAISSWWVNLFGHSNSYINKALKNQL-NKLEHV-MLSNL--THKPVIKLSE----KLSSLTQYKLGHC-FYGSDGAS 325 (965)
Q Consensus 255 ~ylD~~~~~~~~~lGh~~p~v~~av~~~~-~~~~~~-~~~~~--~~~~~~~la~----~l~~~~~~~~~~v-~~~~sGse 325 (965)
+.|.+.++- +. -||.+.+|+..++ ...+.. ..+.. .++...+|.+ +++++++ .+.+ ++++||+.
T Consensus 29 ~~~~l~~se--n~---~~p~v~~a~~~~~~~~~~~g~~gsr~~~G~~~~~~lE~~~~~~la~l~g--~~~alv~~~SG~~ 101 (416)
T PRK13034 29 DHLELIASE--NF---TSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEFVDEVEALAIERAKQLFG--CDYANVQPHSGSQ 101 (416)
T ss_pred cCeeecccc--cC---CCHHHHHHhcchhhcCCCCCCCCCcccCCChHHHHHHHHHHHHHHHHhC--CCceEEecCCcHH
Confidence 455555442 22 3899999999885 554221 11111 2577788887 9999985 4567 45799999
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHH
Q psy8199 326 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIAR 405 (965)
Q Consensus 326 A~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (965)
|+.+++.... .++++|++.+.+|.+... .+..+.+.. ... .......... ...
T Consensus 102 A~~~~l~al~--------~~GD~Vl~~~~~~~~~~~----~g~~~~~~~---~~~-~~~~~~~~~~-----------~~~ 154 (416)
T PRK13034 102 ANGAVYLALL--------KPGDTILGMSLSHGGHLT----HGAKVSLSG---KWY-NAVQYGVDRL-----------TGL 154 (416)
T ss_pred HHHHHHHHhc--------CCCCEEEEcCccceeeee----cCCcceecc---cee-eeEEcccccc-----------cCC
Confidence 9999998763 366788887766544111 111110000 000 0011111000 001
Q ss_pred HHHHHHHHHHHhCCCcEEEEEE-ccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCc
Q psy8199 406 CAIFDLEILLKKNHNKIAAIII-EPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWP 484 (965)
Q Consensus 406 ~d~~~le~~l~~~~~~~aaii~-ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~p 484 (965)
.|++++++++... +..+|++ ++ +. |...+ +++|.++|++||+++|+|++|+ +|-.+........+ ..
T Consensus 155 ~d~~~le~~l~~~--~~klVi~~~~-~~---g~~~d----l~~l~~la~~~g~~livD~Aha-~G~~~~g~~~~~~~-~~ 222 (416)
T PRK13034 155 IDYDEVEELAKEH--KPKLIIAGFS-AY---PRELD----FARFREIADEVGALLMVDMAHI-AGLVAAGEHPNPFP-HA 222 (416)
T ss_pred cCHHHHHHHHhhc--CCeEEEECCC-cc---ccccC----HHHHHHHHHHcCCEEEEeCccc-ccCcccCCCCCCCC-Cc
Confidence 4778888888542 3466777 45 33 44444 8889999999999999999986 66554321111112 36
Q ss_pred cee--eeccccCCCcccceeeeecHH-HHHhhhccCCcccccccCCCC-CCHHHHH-HHHHHHHHHhc--ccHHHHHHHH
Q psy8199 485 DFL--CLSKGITGGYLPLSLVMTTDK-IYNSIYYKNNINIFLHSHSYS-GNPLACC-AALATLEIFNK--DNILQRISQD 557 (965)
Q Consensus 485 Div--t~sK~l~gG~~pig~v~~~~~-i~~~~~~~~~~~~~~~~~t~~-~~~~~~a-aa~a~L~~~~~--~~~~~~~~~~ 557 (965)
|++ +++|+++|+ .-|+++++++ +.+.+.. ....+..+ .+|...+ ++++.++.+.. .+..+++.++
T Consensus 223 Di~~~s~~K~l~g~--~GG~v~~~~~~~~~~~~~------~~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~l~~~ 294 (416)
T PRK13034 223 HVVTTTTHKTLRGP--RGGMILTNDEEIAKKINS------AVFPGLQGGPLMHVIAAKAVAFGEALQPEFKTYAKQVIAN 294 (416)
T ss_pred eEEEEeCcccCCCC--CCeEEEECcHHHHHHHHh------hcCCcccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 776 467999764 2356666554 4333332 11111111 2233333 34445554432 2357899999
Q ss_pred HHHHHHHHHcccCCCceeeee--ceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEee-----------cCCEEEEe
Q psy8199 558 MKKITKALTSLITHPKIINFR--QKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRP-----------IGNTVYLM 624 (965)
Q Consensus 558 ~~~l~~~L~~l~~~~~i~~v~--g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~-----------~~~~lR~~ 624 (965)
.++|+++|+++ ++.... +...+..+.+. +. ......+.+.|.++||++.+ ....+|++
T Consensus 295 a~~l~~~L~~~----G~~~~~~~~~t~i~~v~~~--~~---~~~~~~~~~~L~~~GI~v~~~~~p~~~~~p~~~~~lR~~ 365 (416)
T PRK13034 295 AQALAEVLKER----GYDLVSGGTDNHLLLVDLR--PK---GLSGKDAEQALERAGITVNKNTVPGDTESPFVTSGIRIG 365 (416)
T ss_pred HHHHHHHHHHc----CCEeccCCCCCcEEEEEcC--CC---CCCHHHHHHHHHhCCcEEeccCCCCCCcCCCCCCeeEeC
Confidence 99999999765 222221 35566666654 21 11123455778889999864 12479999
Q ss_pred CCc----ccCHHHHHHHHHhhhcccc
Q psy8199 625 PPY----ILNKNEIQHMTSAIFQTFN 646 (965)
Q Consensus 625 p~~----~~t~~~i~~~~~~l~~~~~ 646 (965)
++. .+++++++++++.+.+.+.
T Consensus 366 ~~~~t~~~~~~~di~~l~~~l~~~~~ 391 (416)
T PRK13034 366 TPAGTTRGFGEAEFREIANWILDVLD 391 (416)
T ss_pred cHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence 888 7789999999999887654
|
|
| >PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.67 E-value=7.7e-15 Score=165.83 Aligned_cols=323 Identities=15% Similarity=0.180 Sum_probs=211.8
Q ss_pred cccccccchhccCCCCCHHHHHHHHHHHhhccccc---cCC---CCcHHHHHHHHHHHhhcCCCC-CeEEEcCChhHHHH
Q psy8199 256 YLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVM---LSN---LTHKPVIKLSEKLSSLTQYKL-GHCFYGSDGASAVE 328 (965)
Q Consensus 256 ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~---~~~---~~~~~~~~la~~l~~~~~~~~-~~v~~~~sGseA~~ 328 (965)
|||..+. |..++.|.+++.+.+....... ... ...+...+..+.++++++... +.++|++|+|+|++
T Consensus 2 Yld~~~~------~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~lg~~~~~~v~~~~~~t~a~~ 75 (371)
T PF00266_consen 2 YLDNAGT------GPMPKSVLEAISDYLRNFYANPHSGVSHRSREFAEILEEAREALAKLLGAPPDEEVVFTSNGTEALN 75 (371)
T ss_dssp EEBTSSS-------B-BHHHHHHHHHHHHHSGSSTSTSSSTTSHHHHHHHHHHHHHHHHHHTSSTTEEEEEESSHHHHHH
T ss_pred EeeCCCc------cCCCHHHHHHHHHHHHHhhhcCcccccchhhhhhHHHHHHHHHHHHhcCCccccccccccccchhhh
Confidence 7776554 3478999999999877642111 111 123445678888999998777 78999999999999
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHH
Q psy8199 329 VALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAI 408 (965)
Q Consensus 329 ~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 408 (965)
.++....... .++++|++....|++........ .......+..++.+... . .|+
T Consensus 76 ~~~~~l~~~~-----~~g~~vl~~~~~~~s~~~~~~~~---------~~~~g~~v~~i~~~~~~-~-----------~~~ 129 (371)
T PF00266_consen 76 AVASSLLNPL-----KPGDEVLVTSNEHPSNRYPWEEI---------AKRKGAEVRVIPADPGG-S-----------LDL 129 (371)
T ss_dssp HHHHHHHHHG-----TTTCEEEEEESSHHHHHHHHHHH---------HHHTTEEEEEEEEGTTS-S-----------CSH
T ss_pred hhhhcccccc-----ccccccccccccccccccccccc---------cccchhhhccccccccc-h-----------hhh
Confidence 9998774321 46788999988887763111110 00111233344432211 1 267
Q ss_pred HHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcceee
Q psy8199 409 FDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLC 488 (965)
Q Consensus 409 ~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt 488 (965)
+++++.|. +++..|.+.- +.+.+|...| +++|.++|+++|+++++|-+++ +|.. ........+|+++
T Consensus 130 ~~~~~~l~---~~~~lv~~~~-~~~~tG~~~p----i~~I~~~~~~~~~~~~vD~~~~-~g~~----~id~~~~~~D~~~ 196 (371)
T PF00266_consen 130 EDLEEALN---PDTRLVSISH-VENSTGVRNP----IEEIAKLAHEYGALLVVDAAQS-AGCV----PIDLDELGADFLV 196 (371)
T ss_dssp HHHHHHHH---TTESEEEEES-BETTTTBBSS----HHHHHHHHHHTTSEEEEE-TTT-TTTS----S--TTTTTESEEE
T ss_pred hhhhhhhc---cccceEEeec-ccccccEEee----eceehhhhhccCCceeEechhc-cccc----cccccccccceee
Confidence 88888885 4677777777 7888999988 9999999999999999999986 6533 2223344579998
Q ss_pred ec--cccCCCcccceeeeecHHHHHhhhccCC-cc---------------cc-cccCCCCCCHHHHHHHHHHHHHHhc--
Q psy8199 489 LS--KGITGGYLPLSLVMTTDKIYNSIYYKNN-IN---------------IF-LHSHSYSGNPLACCAALATLEIFNK-- 547 (965)
Q Consensus 489 ~s--K~l~gG~~pig~v~~~~~i~~~~~~~~~-~~---------------~~-~~~~t~~~~~~~~aaa~a~L~~~~~-- 547 (965)
+| | |+|+ ..+|.++.+++..+.+..... .. .. ...+ +.+..+..+..++|+.+.+
T Consensus 197 ~s~~K-l~gp-~G~g~l~v~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~G--T~~~~~~~~l~~al~~~~~~g 272 (371)
T PF00266_consen 197 FSSHK-LGGP-PGLGFLYVRPEAIERLRPAKPGGGYLDFPSLQEYGLADDARRFEGG--TPNVPAIYALNEALKLLEEIG 272 (371)
T ss_dssp EESTS-TTSS-STEEEEEEEHHHHHHHHTSSSSSSTTTHHHHHHHCHHSTTTGSSSS--S--HHHHHHHHHHHHHHHHHH
T ss_pred ecccc-cCCC-Cchhhheehhhhhhccccccccccccccccchhccccccccccccc--ceeeehhhhHHHHHhhhhccc
Confidence 76 8 8776 478999999988887743100 00 00 0111 2355667777788887743
Q ss_pred -ccHHHHHHHHHHHHHHHHHcccCCCcee-----eeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec----
Q psy8199 548 -DNILQRISQDMKKITKALTSLITHPKII-----NFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI---- 617 (965)
Q Consensus 548 -~~~~~~~~~~~~~l~~~L~~l~~~~~i~-----~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~---- 617 (965)
+.+.++..++.+++.+.|.++ +.+. .-...+.++.+.+. . .....+.+.|.++||.+..+
T Consensus 273 ~~~i~~~~~~l~~~~~~~l~~~---~~~~~~~~~~~~~~~~i~~~~~~--~-----~~~~~~~~~L~~~~I~~~~G~~~~ 342 (371)
T PF00266_consen 273 IERIRERIRELAEYLREALEEL---PGIEVLGPDDEPRRPSIVSFNLP--G-----SDADDVVKYLEERGIAVSTGSACA 342 (371)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT---TTEEESSSSCGGBGTTEEEEEET--T-----SSHHHHHHHHHHHTEEEEESTTTC
T ss_pred cccchhhhhhHHHHHHhhhhcC---CceeEeeecccccccceEEEeec--C-----CCHHHHHHHHhhcCEEEeccCccc
Confidence 345677777788888887765 3322 12334666777664 1 11356778888889998862
Q ss_pred ---------CCEEEEeCCcccCHHHHHHH
Q psy8199 618 ---------GNTVYLMPPYILNKNEIQHM 637 (965)
Q Consensus 618 ---------~~~lR~~p~~~~t~~~i~~~ 637 (965)
++.+|++++...|.+|++++
T Consensus 343 ~~~~~~~~~~~~iRvS~~~~nt~~dv~~l 371 (371)
T PF00266_consen 343 GPSLDILGMGGVIRVSLHYYNTEEDVDRL 371 (371)
T ss_dssp HHHHHHHHTTTEEEEE-GTTSSHHHHHHH
T ss_pred HHHHHHhCCCCEEEEeccCCCCHHHHhhC
Confidence 26999999999999999874
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B .... |
| >cd01335 Radical_SAM Radical SAM superfamily | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.4e-15 Score=152.50 Aligned_cols=191 Identities=25% Similarity=0.437 Sum_probs=147.1
Q ss_pred cCCCCCCCCCCCCCCcCCCCcccccCCCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHhc--CcEe
Q psy8199 689 TGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI--GLET 766 (965)
Q Consensus 689 s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~--~~~i 766 (965)
|++|+++|.||......... .......+++.+.+......+...+.+++|+ ++... .+.++++.+++. +..+
T Consensus 4 ~~~C~~~C~fC~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~gge-p~~~~---~~~~~i~~~~~~~~~~~~ 77 (204)
T cd01335 4 TRGCNLNCGFCSNPASKGRG--PESPPEIEEILDIVLEAKERGVEVVILTGGE-PLLYP---ELAELLRRLKKELPGFEI 77 (204)
T ss_pred CCccCCcCCCCCCCCCCCCC--ccccccHHHHHHHHHHHHhcCceEEEEeCCc-CCccH---hHHHHHHHHHhhCCCceE
Confidence 89999999999987643322 1111122466667777777788888886654 53332 778888888875 5554
Q ss_pred --EEecCCCCHHHHHHHHHhCCCeEeccCCC-CHHHHhccc-CCCCHHHHHHHHHHHHHcCCceeeeEEEecC-CCHHHH
Q psy8199 767 --CLTLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDII-STRDYENRLNTLKNVRNVGINICCGGIIGLS-ESRDQR 841 (965)
Q Consensus 767 --~~~~~~~~~e~l~~Lk~aG~~~i~i~~es-~~~~~~~i~-~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~-et~ed~ 841 (965)
.++...++++.++.|+++|+..+.+++|+ ++..++.++ +..++++++++++.+++.|+.+.+.+++|++ ++.+++
T Consensus 78 ~i~T~~~~~~~~~~~~l~~~g~~~i~i~le~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~g~~~~~~~~~ 157 (204)
T cd01335 78 SIETNGTLLTEELLKELKELGLDGVGVSLDSGDEEVADKIRGSGESFKERLEALKELREAGLGLSTTLLVGLGDEDEEDD 157 (204)
T ss_pred EEEcCcccCCHHHHHHHHhCCCceEEEEcccCCHHHHHHHhcCCcCHHHHHHHHHHHHHcCCCceEEEEEecCCChhHHH
Confidence 44555558999999999999999999999 899999998 7889999999999999999999999999996 666999
Q ss_pred HHHHHHHHhcCCCCCceeeccccccCCCCCC-CCCCCCHHHHHHHH
Q psy8199 842 AELIFQLANLNPYPESVPINNLVQIKGTPLY-GSSILDPLEFIRTI 886 (965)
Q Consensus 842 ~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~-~~~~~~~~~~~~~i 886 (965)
.++++.+.+... +..+.+++|.|.|||+++ ..+..+.....+++
T Consensus 158 ~~~~~~l~~~~~-~~~~~~~~~~p~~~t~~~~~~~~~~~~~~~~~~ 202 (204)
T cd01335 158 LEELELLAEFRS-PDRVSLFRLLPEEGTPLELAAPVVPAEKLLRLI 202 (204)
T ss_pred HHHHHHHHhhcC-cchhhhhhhcccCCCeeeeccccccHHHHHHHh
Confidence 999999998752 678999999999999998 23334444444443
|
Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o |
| >TIGR03801 asp_4_decarbox aspartate 4-decarboxylase | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.3e-15 Score=168.92 Aligned_cols=339 Identities=12% Similarity=0.071 Sum_probs=181.0
Q ss_pred CCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHH-HHHhhcC---CCCC--eEEEcCChhHHHHHHHHHHHHHHHhc
Q psy8199 268 FGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSE-KLSSLTQ---YKLG--HCFYGSDGASAVEVALKMSFHYWYNK 341 (965)
Q Consensus 268 lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~-~l~~~~~---~~~~--~v~~~~sGseA~~~Al~~a~~~~~~~ 341 (965)
.|...|+++.++.+.+... +|..+.+..+..+++++ .+.+..+ ...+ +|+.|+||++|+..++....... .
T Consensus 104 p~~~~~~~~~~~~~~~~~~-~Y~~p~g~~~~~e~iv~~y~~~~~~~~~~~~~~~~V~it~Gat~al~~~~~~l~~~~--l 180 (521)
T TIGR03801 104 LGFDPDAFLYEMCDGIIGD-NYPVPDRMLPHSEKIVHQYLIQEMCGNKPPPGEFDLFAVEGGTAAMCYIFDSLKANE--L 180 (521)
T ss_pred CCCCCCHHHHHHHHHhhcC-CCCCCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHHHHHHHHHHhHhh--c
Confidence 4555677777777765322 33333444555666664 3343322 1223 89999999999999887521100 0
Q ss_pred CCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCc
Q psy8199 342 GFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNK 421 (965)
Q Consensus 342 g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~ 421 (965)
. .++++|++.+++|..+...+...+. ...++.++...... ++ ...|. .|.+++++++. ++
T Consensus 181 l-~pGD~Vlv~~P~y~~y~~~~~l~~~-----------g~~vv~i~~~~~~~--~g--~~~~~-~d~~~l~~~~~---~~ 240 (521)
T TIGR03801 181 L-KKGDKIALMTPIFTPYLEIPELPRY-----------DFEVVRIKADEMTE--DG--THTWQ-YPDKELEKLRD---PS 240 (521)
T ss_pred C-CCCCEEEEeCCCcHHHHHHHHHhcC-----------CcEEEEeecccccc--cc--cccCC-CCHHHHHHhcC---CC
Confidence 0 3678999999999887332211110 11222233211000 00 00011 25677776653 34
Q ss_pred EEE-EEEccccccCCCcccCChHHHHHHHHHHHhc--CCeEEEeccccCCCcccccccccccCCCc-cee---eeccccC
Q psy8199 422 IAA-IIIEPLVQCAGGMIMYDSIYLKLVREICNNY--NIHLIADEIAVGCGRTGKFFACEHAEIWP-DFL---CLSKGIT 494 (965)
Q Consensus 422 ~aa-ii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~--g~llI~DEv~tg~gr~G~~~~~~~~~~~p-Div---t~sK~l~ 494 (965)
+.+ ++++| +|++|.+. +++.+++|.++|++| ++++|+||+|..|.. .+.+. ....| .++ +|||.++
T Consensus 241 ~kai~l~nP--~NPTG~vl-s~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~--~~~sl--~~~~~~~vI~v~SfSK~fg 313 (521)
T TIGR03801 241 IKALFVVNP--SNPPSVAM-SDESIEKIVDIVANDRPDLMILTDDVYGTFVD--DFRSL--FAELPYNTIGVYSFSKYFG 313 (521)
T ss_pred CcEEEEeCC--CCCCCCCC-CHHHHHHHHHHHHhcCCCeEEEECCCchhhcc--cccch--hhhCCCCEEEEEcchhhcc
Confidence 444 45666 89999876 788899999999987 999999999987742 21111 11223 333 5899775
Q ss_pred CCcccceeeeecHH-HHHhhh------------cc------------------CCcccccccCCCCCCHHHHH-----HH
Q psy8199 495 GGYLPLSLVMTTDK-IYNSIY------------YK------------------NNINIFLHSHSYSGNPLACC-----AA 538 (965)
Q Consensus 495 gG~~pig~v~~~~~-i~~~~~------------~~------------------~~~~~~~~~~t~~~~~~~~a-----aa 538 (965)
-.+|++|+++++++ +++.+. .. ...+.+...+|.+.+.+.+. ++
T Consensus 314 ~~G~RlG~i~~~~~~v~d~li~~lp~~~~~~l~~ry~~~~~~p~~~~fidr~vadsr~v~~~~~~g~s~p~Q~q~al~a~ 393 (521)
T TIGR03801 314 ATGWRLGTIALHKDNIFDKLIAELPEEKKKELDKRYSSLTTEPRKLKFIDRLVADSRQVALNHTAGLSTPQQVQMALFSL 393 (521)
T ss_pred CchhhhhhhhcCchHHHHHHHHhccHHHHHHHhhhhccccCChhhhhhHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHH
Confidence 32299999999754 222111 00 00011222344544554443 33
Q ss_pred HHHHHHHhcccH----HHHHHHHHHHHHHHHHcccCCCceeeeeceeEEEEEEEeecCcc--chhh---------HHHHH
Q psy8199 539 LATLEIFNKDNI----LQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPE--QIET---------FSKKF 603 (965)
Q Consensus 539 ~a~L~~~~~~~~----~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~--~~~~---------~~~~~ 603 (965)
.+.|+. .+.. .+.++++.+.+.+.| ..+ +...++.|.++.+.....-.. .... ...++
T Consensus 394 ~all~~--~~~y~~~~~~~~~~R~~~l~~~L----g~~-~~~~~~~g~~Y~~~di~~~~~~~~~~~f~~~l~~~~~~~~~ 466 (521)
T TIGR03801 394 FALMDK--ENAYKAETKDICRRREKLLFRGL----GLP-LQEDPNDVAYYTLIDLEEWAEKNYGEEFSSYLKKNYSPVDV 466 (521)
T ss_pred HHHhcc--chhHHHHHHHHHHHHHHHHHHhc----CCC-CcCCCCCeEEEEEeehHHHHHHhcchHHHHHHhccCCHHHH
Confidence 334431 1223 333344444444433 111 122345665555433211000 0001 12245
Q ss_pred HHHHH-HcCcEEeecC------CEEEEeCCcc-cCHHHHHHHHHhhhccc
Q psy8199 604 FVAAL-KNELLLRPIG------NTVYLMPPYI-LNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 604 ~~~l~-~~Gi~~~~~~------~~lR~~p~~~-~t~~~i~~~~~~l~~~~ 645 (965)
+.+|. +.||.+.|+. +++|++ ++ .+++++.++.+++.+.+
T Consensus 467 ~~~L~~e~gV~v~PG~~Fg~~~~~vRis--la~l~~~~~~~~~~rl~~~~ 514 (521)
T TIGR03801 467 LFRLAEETGIVLLPGGGFGGPEWSVRVS--LANLNEYDYAEIGRAIRKIL 514 (521)
T ss_pred HHHHHHhCCEEEeCchhcCCCCCeEEEE--ecCCCHHHHHHHHHHHHHHH
Confidence 55554 7799998852 479999 55 68888999988887654
|
This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1). |
| >COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.1e-14 Score=163.26 Aligned_cols=338 Identities=14% Similarity=0.122 Sum_probs=223.7
Q ss_pred cCCcccccccccchhccCCCC-CHHHHHHHHHHHhhc-----cccccCCCCcHHHHHHHHHHHhhcC--CCCCeEEEcCC
Q psy8199 251 FSGKRYLDAISSWWVNLFGHS-NSYINKALKNQLNKL-----EHVMLSNLTHKPVIKLSEKLSSLTQ--YKLGHCFYGSD 322 (965)
Q Consensus 251 ~dG~~ylD~~~~~~~~~lGh~-~p~v~~av~~~~~~~-----~~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~~~s 322 (965)
.+....+||..|+.. + .+- ...+.+++.+.+... ..+....+..+++..+++++....+ ...++|++|+|
T Consensus 86 ~~~~~~i~f~~g~p~-~-~~fp~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~~ia~~l~~~~g~~~~~~~IiiT~G 163 (459)
T COG1167 86 EDDPSVIDFAGGLPD-P-SLFPLEALRRALARVLRNYGASLALQYGPTAGLPELREAIAAYLLARRGISCEPEQIVITSG 163 (459)
T ss_pred cCCCceecCCCCCCC-c-ccCCHHHHHHHHHHHHhhcchhhhhcCCCCCCcHHHHHHHHHHHHHhcCCccCcCeEEEeCC
Confidence 445678888877532 2 222 334555555554322 2233334556777788888873333 35669999999
Q ss_pred hhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhH
Q psy8199 323 GASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANE 402 (965)
Q Consensus 323 GseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (965)
..+|+++++++..+ +++.|++=+++|++.. ..+......+..+|. +..+.
T Consensus 164 ~q~al~l~~~~l~~--------pGd~v~vE~PtY~~~~-------------~~~~~~g~~~~~vp~--d~~G~------- 213 (459)
T COG1167 164 AQQALDLLLRLLLD--------PGDTVLVEDPTYPGAL-------------QALEALGARVIPVPV--DEDGI------- 213 (459)
T ss_pred HHHHHHHHHHHhCC--------CCCEEEEcCCCcHHHH-------------HHHHHcCCcEEecCC--CCCCC-------
Confidence 99999999988753 6789999999999872 222222233344443 22222
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccc-cccccC
Q psy8199 403 IARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFF-ACEHAE 481 (965)
Q Consensus 403 ~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~-~~~~~~ 481 (965)
|+++|++.++.+ ++.++.+.|..||++|... +.+--++|.++|++||+++|=|++|..|-..+..- +...++
T Consensus 214 ----~~e~le~~~~~~--~~k~~y~~P~~qNPtG~tm-s~~rR~~Ll~lA~~~~~~IIEDD~y~el~~~~~p~~~l~~ld 286 (459)
T COG1167 214 ----DPEALEEALAQW--KPKAVYVTPTFQNPTGVTM-SLERRKALLALAEKYDVLIIEDDYYGELRYDGPPPPPLKALD 286 (459)
T ss_pred ----CHHHHHHHHhhc--CCcEEEECCCCCCCCCCcc-CHHHHHHHHHHHHHcCCeEEeeCcchhhhcCCCCCCChHhhC
Confidence 789999998753 6788999997889999877 66778999999999999999999998875444321 122222
Q ss_pred C---CcceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHH-
Q psy8199 482 I---WPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQD- 557 (965)
Q Consensus 482 ~---~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~- 557 (965)
- ..-+-+|||.++-| +++|++++++++++.+.. ..+..+.+.+.+.+++...-|. +..+.++++++
T Consensus 287 ~~~rViy~gSFSK~l~Pg-lRlG~vv~p~~~~~~~~~------~k~~~~~~~s~~~Q~~la~~l~---~G~~~~hl~~lR 356 (459)
T COG1167 287 APGRVIYLGSFSKTLAPG-LRLGYVVAPPELIEKLLR------LKQAADLGPSSLSQAALAAFLL---SGHYDRHLRRLR 356 (459)
T ss_pred CCCCEEEEeeehhhcccc-cceeeeeCCHHHHHHHHH------HHHHhcCCCChHHHHHHHHHHH---cCCHHHHHHHHH
Confidence 1 11233899999988 799999999999988875 3456677788888887776664 22333333333
Q ss_pred ------HHHHHHHHHcccCCC-cee-eeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec----------CC
Q psy8199 558 ------MKKITKALTSLITHP-KII-NFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI----------GN 619 (965)
Q Consensus 558 ------~~~l~~~L~~l~~~~-~i~-~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~----------~~ 619 (965)
.+.+.+.|.+. .+ .+. ..+..|+++++.+. ++ .....+.+.+.++|+.+.|. .+
T Consensus 357 ~~y~~rr~~l~~~L~~~--~~~~~~~~~p~gG~flwl~l~--~~----~~~~~l~~~a~~~gv~i~~~g~~f~~~~~~~~ 428 (459)
T COG1167 357 REYARRRDALLEALAEY--LPELATWTRPEGGLFLWLELP--EG----IDARELLAAALEKGVVVTPLGSAFSADGDPRN 428 (459)
T ss_pred HHHHHHHHHHHHHHHHh--CCCCeeeecCCceEEEEEEcC--CC----CCHHHHHHHHHHCCCEEEcCCccccCCCCCCC
Confidence 33333333332 12 333 23334788888886 21 11456888999999999872 25
Q ss_pred EEEEeCCcccCHHHHHHHHHhhhcccc
Q psy8199 620 TVYLMPPYILNKNEIQHMTSAIFQTFN 646 (965)
Q Consensus 620 ~lR~~p~~~~t~~~i~~~~~~l~~~~~ 646 (965)
.+|++.+ ..+++++++.+.++...+.
T Consensus 429 ~~Rl~~s-~~~~e~i~~gi~~l~~~~~ 454 (459)
T COG1167 429 GLRLSFS-SPSEEEIEEGIKRLAALLR 454 (459)
T ss_pred eEEEEcC-CCCHHHHHHHHHHHHHHHH
Confidence 8999976 3457788888887766543
|
|
| >PRK08637 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.6e-14 Score=163.94 Aligned_cols=309 Identities=9% Similarity=0.052 Sum_probs=184.4
Q ss_pred ccCCCCcHHHHHHHHHHHhhcC----CCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCcccccc
Q psy8199 290 MLSNLTHKPVIKLSEKLSSLTQ----YKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALA 365 (965)
Q Consensus 290 ~~~~~~~~~~~~la~~l~~~~~----~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~ 365 (965)
....+..+.+..+++.+.+..+ ...+++++|+|+++|+..++++... +++.|++.+|+|..+......
T Consensus 41 ~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~~--------~gd~Vlv~~P~y~~~~~~~~~ 112 (388)
T PRK08637 41 APPQGIPELRDLWQEKMLRENPSLSGKKMSLPIVTNALTHGLSLVADLFVD--------QGDTVLLPDHNWGNYKLTFNT 112 (388)
T ss_pred CCCCCCHHHHHHHHHHHhccCccccccccceeeEccchHHHHHHHHHHhcC--------CCCEEEEcCCCCccHHHHHHH
Confidence 3344556666777777665432 1235789999999999999887643 568899999999887432111
Q ss_pred ccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHh--CCCcEEEEEEccccccCCCcccCChH
Q psy8199 366 VTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKK--NHNKIAAIIIEPLVQCAGGMIMYDSI 443 (965)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~--~~~~~aaii~ep~v~~~~G~~~~~~~ 443 (965)
..| ..++.+|....... .|++++++.++. ...+...++.+| +|++|.+. +.+
T Consensus 113 ~~g------------~~vv~v~~~~~~~~-----------~d~~~l~~~~~~~~~~~~~~~~~~~P--~NPTG~~~-s~~ 166 (388)
T PRK08637 113 RRG------------AEIVTYPIFDEDGG-----------FDTDALKEALQAAYNKGKVIVILNFP--NNPTGYTP-TEK 166 (388)
T ss_pred hcC------------CEEEEecccCCCCc-----------CCHHHHHHHHHhhccCCCEEEEEeCC--CCCCCCCC-CHH
Confidence 111 13344443211111 267888887762 122333444445 99999765 788
Q ss_pred HHHHHHHHHHh-----cCCeEEEeccccCCCcccccc-c-cc-ccCCCcce--e---eeccccCCCcccceeeeec----
Q psy8199 444 YLKLVREICNN-----YNIHLIADEIAVGCGRTGKFF-A-CE-HAEIWPDF--L---CLSKGITGGYLPLSLVMTT---- 506 (965)
Q Consensus 444 ~l~~l~~l~~~-----~g~llI~DEv~tg~gr~G~~~-~-~~-~~~~~pDi--v---t~sK~l~gG~~pig~v~~~---- 506 (965)
.+++|.++|++ |++++|.||+|.+|-..+... . +. ..+..+++ + +|||.++..++++|+++.+
T Consensus 167 ~~~~l~~~~~~~~~~~~~~~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~~~s~SK~~~~pGlRlG~~~~~~~~~ 246 (388)
T PRK08637 167 EATAIVEAIKELADAGTKVVAVVDDAYFGLFYEDSYKESLFAALANLHSNILAVKLDGATKEEFVWGFRVGFITFGTKAG 246 (388)
T ss_pred HHHHHHHHHHHHHhcCCcEEEEecccchhcccCCccchhhHHHhhcccccceEEEeccccccCCCcccceEEEEEccccC
Confidence 89999998875 999999999999875444321 1 11 12333343 2 5899655433899998853
Q ss_pred --HHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHH-------HHHHHcccCCCceeee
Q psy8199 507 --DKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKI-------TKALTSLITHPKIINF 577 (965)
Q Consensus 507 --~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l-------~~~L~~l~~~~~i~~v 577 (965)
+++++.+.... ........++.|.++++++.++|+ +..+.+++++..+.+ .+.|++..-.+++...
T Consensus 247 ~~~~l~~~~~~~~--~~~~~~~~~~~s~~~q~a~~~~l~---~~~~~~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~~~~ 321 (388)
T PRK08637 247 SSQTVKEALEKKV--KGLIRSNISNGPHPSQSAVLRALN---SPEFDKEKQEKFQILKERYEKTKEVLYDGKYDDAWQAY 321 (388)
T ss_pred CcHHHHHHHHHHH--HHHhhcccCCCCcHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccc
Confidence 67777664300 000111234678889999988884 333444444333333 3333221000134444
Q ss_pred ecee-EEEEEEEeecCccchhhHHHHHHHHHH-HcCcEEeecC-CEEEEeCCcccCHHHHHHHHHhhhccc
Q psy8199 578 RQKG-MIWAFDVIIEDPEQIETFSKKFFVAAL-KNELLLRPIG-NTVYLMPPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 578 ~g~G-~~~~i~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~~-~~lR~~p~~~~t~~~i~~~~~~l~~~~ 645 (965)
++.| +++++.+. + ....++.+.|. ++||.+.+.+ +++||+... .+.+++++.++++.+++
T Consensus 322 ~~~~g~~~~~~l~--~-----~~~~~l~~~l~~~~gv~~~~~~~~~iRi~~~~-~~~~~i~~~~~~l~~~~ 384 (388)
T PRK08637 322 PFNSGYFMCLKLK--G-----VDAEELRVHLLEKYGIGTIALNETDLRIAFSC-VEEEDIPELFDSIYKAI 384 (388)
T ss_pred cccceEEEEecCC--h-----HHHHHHHHHHhhhcceEEEeccCCceEEEeec-CCHHHHHHHHHHHHHHH
Confidence 5444 55555553 1 11346777775 6799877644 689999443 67888999888876544
|
|
| >PRK13361 molybdenum cofactor biosynthesis protein A; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.3e-15 Score=161.83 Aligned_cols=202 Identities=19% Similarity=0.247 Sum_probs=153.2
Q ss_pred CCeEEEeEeEeeccCCCCCCCCCCCCCCcCCCCcccccCCCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHH
Q psy8199 676 ANEIELAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENM 755 (965)
Q Consensus 676 g~~~~~~~~i~~~s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~ 755 (965)
|..+. +.-+++ |+.||++|.||..... ........++.||+.+.++++.+.|++.|.|+||+ |+...+ +.++
T Consensus 10 gr~i~-~l~i~i-T~~CNl~C~yC~~~~~--~~~~~~~~ls~eei~~li~~~~~~Gv~~I~~tGGE-Pllr~d---l~~l 81 (329)
T PRK13361 10 GRTVT-YLRLSV-TDRCDFRCVYCMSEDP--CFLPRDQVLSLEELAWLAQAFTELGVRKIRLTGGE-PLVRRG---CDQL 81 (329)
T ss_pred CCccC-eEEEEe-cCCccccCCCCCCCCC--CcCCccCCCCHHHHHHHHHHHHHCCCCEEEEECcC-CCcccc---HHHH
Confidence 56554 234567 9999999999974421 11123345899999999999999999999998765 666544 4555
Q ss_pred HHHHHhcC-c-EeE-EecCCCCHHHHHHHHHhCCCeEeccCCC-CHHHHhcccCCCCHHHHHHHHHHHHHcCC-ceeeeE
Q psy8199 756 ICEVKKIG-L-ETC-LTLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGI-NICCGG 830 (965)
Q Consensus 756 ~~~i~~~~-~-~i~-~~~~~~~~e~l~~Lk~aG~~~i~i~~es-~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi-~v~~~~ 830 (965)
++.+++.+ + .+. +++|.+..+.++.|+++|+++++++++| +++.++++.+..++++.+++++.++++|+ ++..+.
T Consensus 82 i~~i~~~~~l~~i~itTNG~ll~~~~~~L~~aGl~~v~ISlDs~~~e~~~~i~~~g~~~~vl~~i~~~~~~Gi~~v~in~ 161 (329)
T PRK13361 82 VARLGKLPGLEELSLTTNGSRLARFAAELADAGLKRLNISLDTLRPELFAALTRNGRLERVIAGIDAAKAAGFERIKLNA 161 (329)
T ss_pred HHHHHhCCCCceEEEEeChhHHHHHHHHHHHcCCCeEEEEeccCCHHHhhhhcCCCCHHHHHHHHHHHHHcCCCceEEEE
Confidence 66566532 2 232 2445555679999999999999999999 89999999998899999999999999999 787777
Q ss_pred EEecCCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCC-CCCCCCCCHHHHHHHHHH
Q psy8199 831 IIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTP-LYGSSILDPLEFIRTIAV 888 (965)
Q Consensus 831 i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~-l~~~~~~~~~~~~~~ia~ 888 (965)
++-.|++.+++.+.++++++++ ++ +.+..++|..+.. +......+.+++.+.+..
T Consensus 162 v~~~g~N~~ei~~~~~~~~~~g--i~-~~~ie~mP~g~~~~~~~~~~~~~~e~~~~l~~ 217 (329)
T PRK13361 162 VILRGQNDDEVLDLVEFCRERG--LD-IAFIEEMPLGEIDERRRARHCSSDEVRAIIET 217 (329)
T ss_pred EEECCCCHHHHHHHHHHHHhcC--Ce-EEEEecccCCCccchhhccCcCHHHHHHHHHH
Confidence 6645799999999999999998 54 5577788876533 223345688888777644
|
|
| >TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.7e-15 Score=162.28 Aligned_cols=204 Identities=17% Similarity=0.268 Sum_probs=154.7
Q ss_pred CCeEEEeEeEeeccCCCCCCCCCCCCCCcCCCCcccccCCCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHH
Q psy8199 676 ANEIELAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENM 755 (965)
Q Consensus 676 g~~~~~~~~i~~~s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~ 755 (965)
|..+. +..+++ |+.|+++|.||...............++.+++.+.++.+.+.|++.|.++||+ |+...+ +.++
T Consensus 6 gr~~~-~l~i~v-T~~CNl~C~yC~~~~~~~~~~~~~~~ls~eei~~~i~~~~~~gv~~V~ltGGE-Pll~~~---l~~l 79 (334)
T TIGR02666 6 GRRID-YLRISV-TDRCNLRCVYCMPEGGGLDFLPKEELLTFEEIERLVRAFVGLGVRKVRLTGGE-PLLRKD---LVEL 79 (334)
T ss_pred CCccC-eEEEEe-cCccCcCCCCCCCCcCCCCcCCccCCCCHHHHHHHHHHHHHCCCCEEEEECcc-ccccCC---HHHH
Confidence 55554 344667 99999999999865411111123346899999999999999999999998765 665544 4455
Q ss_pred HHHHHh-cCc-EeEE-ecCCCCHHHHHHHHHhCCCeEeccCCC-CHHHHhcccC-CCCHHHHHHHHHHHHHcCCc-eeee
Q psy8199 756 ICEVKK-IGL-ETCL-TLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIIS-TRDYENRLNTLKNVRNVGIN-ICCG 829 (965)
Q Consensus 756 ~~~i~~-~~~-~i~~-~~~~~~~e~l~~Lk~aG~~~i~i~~es-~~~~~~~i~~-~~~~~~~~~~i~~~~~~Gi~-v~~~ 829 (965)
++.+++ .++ .+.+ ++|.+..+.++.|+++|++.+++++++ +++.++++.+ +.++++++++++.++++|+. +..+
T Consensus 80 i~~i~~~~gi~~v~itTNG~ll~~~~~~L~~~gl~~v~ISld~~~~~~~~~i~~~~~~~~~vl~~i~~l~~~G~~~v~in 159 (334)
T TIGR02666 80 VARLAALPGIEDIALTTNGLLLARHAKDLKEAGLKRVNVSLDSLDPERFAKITRRGGRLEQVLAGIDAALAAGLEPVKLN 159 (334)
T ss_pred HHHHHhcCCCCeEEEEeCchhHHHHHHHHHHcCCCeEEEecccCCHHHhheeCCCCCCHHHHHHHHHHHHHcCCCcEEEE
Confidence 555554 345 4433 466767789999999999999999999 8999999985 67999999999999999997 8888
Q ss_pred EEEecCCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCC-CCCCCCHHHHHHHHHH
Q psy8199 830 GIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLY-GSSILDPLEFIRTIAV 888 (965)
Q Consensus 830 ~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~-~~~~~~~~~~~~~ia~ 888 (965)
+++..|.+.+++.+.++++++++ . .+.+..|+|..++..+ .....+.+++++.++.
T Consensus 160 ~vv~~g~n~~ei~~l~~~~~~~g--v-~~~~ie~mp~~~~~~~~~~~~~~~~ei~~~l~~ 216 (334)
T TIGR02666 160 TVVMRGVNDDEIVDLAEFAKERG--V-TLRFIELMPLGEGNGWREKKFVSADEILERLEQ 216 (334)
T ss_pred EEEeCCCCHHHHHHHHHHHHhcC--C-eEEEEeccCCCCCccchhhcccCHHHHHHHHHh
Confidence 87766899999999999999998 4 4677778898776432 3344567777766543
|
The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine. |
| >PLN02409 serine--glyoxylate aminotransaminase | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.2e-14 Score=163.04 Aligned_cols=301 Identities=15% Similarity=0.100 Sum_probs=192.7
Q ss_pred cHHHHHHHHHHHhhcCCCC-CeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccc
Q psy8199 296 HKPVIKLSEKLSSLTQYKL-GHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKE 374 (965)
Q Consensus 296 ~~~~~~la~~l~~~~~~~~-~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~ 374 (965)
.+...++.++++++++.+. +.+++++||+++++.++.... .++++|++.+.+|++.... .
T Consensus 41 ~~~~~~~~~~l~~~~g~~~~~~vi~~~~gt~a~~~a~~~~~--------~~Gd~Vlv~~~~~~~~~~~-----------~ 101 (401)
T PLN02409 41 PALTKELLEDVKYIFKTKSGTPFIFPTTGTGAWESALTNTL--------SPGDKVVSFRIGQFSLLWI-----------D 101 (401)
T ss_pred HHHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHhcC--------CCCCEEEEeCCCchhHHHH-----------H
Confidence 4556778888888887554 468999999999999887553 3668899999777654211 1
Q ss_pred hhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCC-CcEEEEEEccccccCCCcccCChHHHHHHHHH--
Q psy8199 375 IYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNH-NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREI-- 451 (965)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~-~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l-- 451 (965)
........+..++.+.... .|++++++++++.+ .++.+|++.. +.+++|.+.| +++|.++
T Consensus 102 ~~~~~g~~v~~v~~~~~~~------------~~~~~l~~~l~~~~~~~~k~v~~~~-~~~~tG~~~~----~~~i~~l~~ 164 (401)
T PLN02409 102 QMQRLNFDVDVVESPWGQG------------ADLDILKSKLRQDTNHKIKAVCVVH-NETSTGVTND----LAGVRKLLD 164 (401)
T ss_pred HHHHcCCceEEEECCCCCC------------CCHHHHHHHHhhCcCCCccEEEEEe-ecccccccCC----HHHHHHHHh
Confidence 1111122344555432111 25788888887521 2566677766 6788999987 8888888
Q ss_pred HHhcCCeEEEeccccCCCcccccccccccCCCcceeee--ccccCCCcccceeeeecHHHHHhhhccCCccccc------
Q psy8199 452 CNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCL--SKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFL------ 523 (965)
Q Consensus 452 ~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~--sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~------ 523 (965)
|+++|+++|+|++++ +|.. .........|++++ +|++++. ..+|++++++++++.+.... ..++.
T Consensus 165 ~~~~g~~~vvD~v~s-~g~~----~id~~~~~~D~~~~s~~K~l~~P-~G~G~l~~~~~~~~~~~~~~-~~~~~~~~~~~ 237 (401)
T PLN02409 165 CAQHPALLLVDGVSS-IGAL----DFRMDEWGVDVALTGSQKALSLP-TGLGIVCASPKALEASKTAK-SPRVFFDWADY 237 (401)
T ss_pred hhccCcEEEEEcccc-cCCc----cccccccCccEEEEcCccccCcC-CCcceeEECHHHHHHHhcCC-CCCeecCHHHH
Confidence 999999999999986 5421 22222334677754 6988775 46899999999887765311 01110
Q ss_pred ----ccC---CCCCCHHHHHHHHHHHHHHhc---ccHHHHHHHHHHHHHHHHHcccCCCceeee-ec-eeEEEEEEEeec
Q psy8199 524 ----HSH---SYSGNPLACCAALATLEIFNK---DNILQRISQDMKKITKALTSLITHPKIINF-RQ-KGMIWAFDVIIE 591 (965)
Q Consensus 524 ----~~~---t~~~~~~~~aaa~a~L~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v-~g-~G~~~~i~~~~~ 591 (965)
..+ .++.+...+.+..++|+.+.+ +...++.+++.+++++.|+++ ....+..- .. .+.+..+.+.
T Consensus 238 ~~~~~~g~~~~~Tp~~~~~~al~~al~~~~~~G~e~i~~~~~~l~~~l~~~L~~~-g~~~~~~~~~~~s~~v~~~~~p-- 314 (401)
T PLN02409 238 LKFYKLGTYWPYTPSIQLLYGLRAALDLIFEEGLENVIARHARLGEATRLAVEAW-GLKLCTKKPEWRSDTVTAVVVP-- 314 (401)
T ss_pred HHHHhcCCCCCCCccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCeeccCChhhcccceEEEeCC--
Confidence 111 234556678888888887654 346677778888888888765 11111110 11 1233444432
Q ss_pred CccchhhHHHHHHHHH-HHcCcEEeec-----CCEEEEeCCcccCHHHHHHHHHhhhcccc
Q psy8199 592 DPEQIETFSKKFFVAA-LKNELLLRPI-----GNTVYLMPPYILNKNEIQHMTSAIFQTFN 646 (965)
Q Consensus 592 ~~~~~~~~~~~~~~~l-~~~Gi~~~~~-----~~~lR~~p~~~~t~~~i~~~~~~l~~~~~ 646 (965)
++ .....+.+.+ .+.|+.+..+ +..+|++..-..+.+++..++.++.+++.
T Consensus 315 ~~----~~~~~l~~~l~~~~~i~i~~G~~~~~~~~~Rig~~g~~~~~~~~~~~~~~~~~l~ 371 (401)
T PLN02409 315 EG----IDSAEIVKNAWKKYNLSLGLGLNKVAGKVFRIGHLGNVNELQLLGALAGVEMVLK 371 (401)
T ss_pred CC----CCHHHHHHHHHHhCCEEEEcCCCcccCCEEEEcCCCCCCHHHHHHHHHHHHHHHH
Confidence 11 1123455555 4679998753 46899999888999999999988876543
|
|
| >cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn) | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.6e-14 Score=157.98 Aligned_cols=305 Identities=14% Similarity=0.094 Sum_probs=190.4
Q ss_pred HHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCc
Q psy8199 277 KALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSY 356 (965)
Q Consensus 277 ~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~y 356 (965)
+++.+.+....+ +..+...++.+.++++++ .+++++++||++|+..+++.+.. .++++|++...+|
T Consensus 3 ~~~~~~~~~~~~-----~~~~~~~~~~~~la~~~~--~~~~~~~~sgt~al~~~l~~l~~-------~~gd~vl~~~~~~ 68 (352)
T cd00616 3 EAVEEVLDSGWL-----TLGPKVREFEKAFAEYLG--VKYAVAVSSGTAALHLALRALGI-------GPGDEVIVPSFTF 68 (352)
T ss_pred HHHHHHHHcCCc-----cCCHHHHHHHHHHHHHhC--CCeEEEECCHHHHHHHHHHHcCC-------CCCCEEEeCCcch
Confidence 456665555321 335678899999999995 47899999999999999987632 2567899999999
Q ss_pred cCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCC
Q psy8199 357 HGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGG 436 (965)
Q Consensus 357 Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G 436 (965)
|+........+ ....+++....... .|++++++.+. +++++|++.. ..|
T Consensus 69 ~~~~~~~~~~g-------------~~~~~~~~~~~~~~-----------~d~~~l~~~i~---~~~~~v~~~~----~~G 117 (352)
T cd00616 69 VATANAILLLG-------------ATPVFVDIDPDTYN-----------IDPELIEAAIT---PRTKAIIPVH----LYG 117 (352)
T ss_pred HHHHHHHHHcC-------------CeEEEEecCCCcCC-----------cCHHHHHHhcC---cCCeEEEEEC----CCC
Confidence 87633222211 12333333211111 36788888774 3566666644 357
Q ss_pred cccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcceeeec----cccCCCcccceeeeec-HHHHH
Q psy8199 437 MIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS----KGITGGYLPLSLVMTT-DKIYN 511 (965)
Q Consensus 437 ~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~s----K~l~gG~~pig~v~~~-~~i~~ 511 (965)
...+ +++|+++|+++|+++|+|++|+ +|.. +.....+...|+.++| |.+++| +.|+++.+ +++++
T Consensus 118 ~~~~----~~~i~~l~~~~~i~li~D~a~~-~g~~---~~~~~~~~~~d~~~~S~~~~K~~~~~--~gg~~~~~~~~~~~ 187 (352)
T cd00616 118 NPAD----MDAIMAIAKRHGLPVIEDAAQA-LGAT---YKGRKVGTFGDAGAFSFHPTKNLTTG--EGGAVVTNDEELAE 187 (352)
T ss_pred CcCC----HHHHHHHHHHcCCeEEEECCCC-CCCe---ECCEEcccCcceeEEcCCCCCCCccc--CceEEEECCHHHHH
Confidence 6655 8999999999999999999997 4432 1111223335777766 988654 45667665 46665
Q ss_pred hhhc---cCCcc------cccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcccCCCceeeee---c
Q psy8199 512 SIYY---KNNIN------IFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFR---Q 579 (965)
Q Consensus 512 ~~~~---~~~~~------~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~---g 579 (965)
.+.. .+... ....+.++..+++.++.++..++.+ +...++.+++.+++++.|.++.....+.... .
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~l~~~--~~~~~~~~~~~~~~~~~L~~~~g~~~~~~~~~~~~ 265 (352)
T cd00616 188 RARLLRNHGRDRDRFKYEHEILGYNYRLSEIQAAIGLAQLEKL--DEIIARRREIAERYKELLADLPGIRLPDVPPGVKH 265 (352)
T ss_pred HHHHHHHcCCCCCCCccccceeeeccCcCHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHhcCCCCccCCCCCCCCce
Confidence 4432 11100 0012234456788888887777655 3467788888999999887653221111111 1
Q ss_pred eeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEee----c------------------------CCEEEEeCCcccCH
Q psy8199 580 KGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRP----I------------------------GNTVYLMPPYILNK 631 (965)
Q Consensus 580 ~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~----~------------------------~~~lR~~p~~~~t~ 631 (965)
...++.+.+. +. .......+.+.|.++||.+.. . .+.+|+.+....++
T Consensus 266 ~~~~~~~~~~--~~--~~~~~~~v~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~l~~~~~~t~ 341 (352)
T cd00616 266 SYHLYVIRLD--PE--AGESRDELIEALKEAGIETRVHYPPLHHQPPYKKLLGYPPGDLPNAEDLAERVLSLPLHPSLTE 341 (352)
T ss_pred eeEEEEEEEC--Cc--CCCCHHHHHHHHHHCCCCeeeecCccccCHhhhhccCCCcCCChHHHHHHhCeEEccCCCCCCH
Confidence 2344555443 10 011244678888899996641 0 14799999999999
Q ss_pred HHHHHHHHhhh
Q psy8199 632 NEIQHMTSAIF 642 (965)
Q Consensus 632 ~~i~~~~~~l~ 642 (965)
++++.++++++
T Consensus 342 ~di~~i~~~l~ 352 (352)
T cd00616 342 EEIDRVIEALR 352 (352)
T ss_pred HHHHHHHHHhC
Confidence 99999988763
|
AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein |
| >COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.4e-14 Score=151.68 Aligned_cols=204 Identities=19% Similarity=0.269 Sum_probs=157.7
Q ss_pred CCeEEEeEeEeeccCCCCCCCCCCCCCCcCCCCcccccCCCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHH
Q psy8199 676 ANEIELAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENM 755 (965)
Q Consensus 676 g~~~~~~~~i~~~s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~ 755 (965)
|..+. .--+++ |..|+++|.||-....+. ..++...+|+|||...++.+.+.|++.|-|+||+ |+...++..|.+.
T Consensus 7 gR~~~-~LRiSv-TdrCNfrC~YCm~eg~~~-~~~~~~~Ls~eei~~~~~~~~~~Gv~kvRlTGGE-PllR~dl~eIi~~ 82 (322)
T COG2896 7 GRPVR-YLRISV-TDRCNFRCTYCMPEGPLA-FLPKEELLSLEEIRRLVRAFAELGVEKVRLTGGE-PLLRKDLDEIIAR 82 (322)
T ss_pred CCEec-eEEEEE-ecCcCCcccccCCCCCcc-cCcccccCCHHHHHHHHHHHHHcCcceEEEeCCC-chhhcCHHHHHHH
Confidence 44443 234566 999999999997554111 1122346899999999999999999999998886 6677666665555
Q ss_pred HHHHHhcCcEeEE-ecCCCCHHHHHHHHHhCCCeEeccCCC-CHHHHhcccCCCCHHHHHHHHHHHHHcCC-ceeeeEEE
Q psy8199 756 ICEVKKIGLETCL-TLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGI-NICCGGII 832 (965)
Q Consensus 756 ~~~i~~~~~~i~~-~~~~~~~e~l~~Lk~aG~~~i~i~~es-~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi-~v~~~~i~ 832 (965)
++.+ .--.+++ ++|.+-....+.||+||+++|+++++| +++.|++|.....++++++.|+.|.++|+ +|..++.+
T Consensus 83 l~~~--~~~~islTTNG~~L~~~a~~Lk~AGl~rVNVSLDsld~e~f~~IT~~~~~~~Vl~GI~~A~~~Gl~pVKlN~Vv 160 (322)
T COG2896 83 LARL--GIRDLSLTTNGVLLARRAADLKEAGLDRVNVSLDSLDPEKFRKITGRDRLDRVLEGIDAAVEAGLTPVKLNTVL 160 (322)
T ss_pred Hhhc--ccceEEEecchhhHHHHHHHHHHcCCcEEEeecccCCHHHHHHHhCCCcHHHHHHHHHHHHHcCCCceEEEEEE
Confidence 5544 1223444 478888999999999999999999999 99999999987779999999999999999 58888888
Q ss_pred ecCCCHHHHHHHHHHHHhcCCCCCceeeccccccCC-CCCCCCCCCCHHHHHHHHHH
Q psy8199 833 GLSESRDQRAELIFQLANLNPYPESVPINNLVQIKG-TPLYGSSILDPLEFIRTIAV 888 (965)
Q Consensus 833 Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~g-T~l~~~~~~~~~~~~~~ia~ 888 (965)
=-|-+..++.+.++++++.+ ..+.+-.|+|... +.+......+..++.+.+.-
T Consensus 161 ~kgvNd~ei~~l~e~~~~~~---~~lrfIE~m~~g~~~~~~~~~~~~~~~i~~~l~~ 214 (322)
T COG2896 161 MKGVNDDEIEDLLEFAKERG---AQLRFIELMPLGEGNSWRLDKYLSLDEILRKLEE 214 (322)
T ss_pred ecCCCHHHHHHHHHHHhhcC---CceEEEEEeecCcccchhhhccccHHHHHHHHHh
Confidence 55789999999999999998 4678888888764 22222235677777777666
|
|
| >PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.7e-14 Score=159.38 Aligned_cols=298 Identities=14% Similarity=0.141 Sum_probs=186.7
Q ss_pred HHHHHHHHHHHhhcCCCC--CeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccc
Q psy8199 297 KPVIKLSEKLSSLTQYKL--GHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKE 374 (965)
Q Consensus 297 ~~~~~la~~l~~~~~~~~--~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~ 374 (965)
+...++.+.++++++... +.+++++||+++++.++..... +++++++.+.+|.|.....
T Consensus 37 ~~~~~~~~~l~~l~~~~~~~~~i~~~~~gt~~l~~~~~~l~~--------~~~~vlv~~~~~~~~~~~~----------- 97 (368)
T PRK13479 37 ALTASVRAKLVAIATGEEGYTCVPLQGSGTFSVEAAIGSLVP--------RDGKVLVPDNGAYGARIAQ----------- 97 (368)
T ss_pred HHHHHHHHHHHHHhCCCCCceEEEEcCCcHHHHHHHHHhccC--------CCCeEEEEeCCchHHHHHH-----------
Confidence 467788888999887533 4578999999999999987632 4567777777666642100
Q ss_pred hhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHh
Q psy8199 375 IYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNN 454 (965)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~ 454 (965)
........+..+|.+.... .|++++++++.+.+ ++..|.+.. +++++|...| +++|.++|++
T Consensus 98 ~~~~~g~~~~~i~~~~~~~------------~d~~~l~~~l~~~~-~~~~v~~~~-~~~~tG~~~~----~~~i~~l~~~ 159 (368)
T PRK13479 98 IAEYLGIAHVVLDTGEDEP------------PDAAEVEAALAADP-RITHVALVH-CETTTGILNP----LDEIAAVAKR 159 (368)
T ss_pred HHHHcCCcEEEEECCCCCC------------CCHHHHHHHHHhCC-CCcEEEEEc-ccCccccccC----HHHHHHHHHH
Confidence 0011112344555432111 36788888886533 333333333 4788999887 8899999999
Q ss_pred cCCeEEEeccccCCCcccccccccccCCCcceee--eccccCCCcccceeeeecHHHHHhhhccCCccccc---------
Q psy8199 455 YNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLC--LSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFL--------- 523 (965)
Q Consensus 455 ~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt--~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~--------- 523 (965)
+|+++|+|.++ +||.. ..... ...+|+++ ++|.+.|. ..+|++++++++++.+... ..++.
T Consensus 160 ~~~~livDa~~-~~g~~--~~~~~--~~~~d~~v~s~~K~l~g~-~G~G~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 231 (368)
T PRK13479 160 HGKRLIVDAMS-SFGAI--PIDIA--ELGIDALISSANKCIEGV-PGFGFVIARRSELEACKGN--SRSLSLDLYDQWAY 231 (368)
T ss_pred cCCEEEEEccc-ccCCc--ccccc--ccCceEEEecCccccccC-CCceEEEECHHHHHHhhcC--CCCeeecHHHHHhh
Confidence 99999999777 47532 22222 23467764 57888664 3579999999988776542 11110
Q ss_pred ----ccCCCCCCHHHHHHHHHHHHHHhcc----cHHHHHHHHHHHHHHHHHcccCCCce-ee-eeceeEEEEEEEeecCc
Q psy8199 524 ----HSHSYSGNPLACCAALATLEIFNKD----NILQRISQDMKKITKALTSLITHPKI-IN-FRQKGMIWAFDVIIEDP 593 (965)
Q Consensus 524 ----~~~t~~~~~~~~aaa~a~L~~~~~~----~~~~~~~~~~~~l~~~L~~l~~~~~i-~~-v~g~G~~~~i~~~~~~~ 593 (965)
....|+.+..++++..++++.+.++ +..+++.++.+++++.|+++ ....+ .. .+. ..+..+.+. ..
T Consensus 232 ~~~~~~~~~t~~~~~~~~l~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~-~~~~~~~~~--~~ 307 (368)
T PRK13479 232 MEKTGQWRFTPPTHVVAAFYQALLELEEEGGVPARGARYANNQRTLVAGMRAL-GFEPLLDAEIQS-PIIVTFHAP--AD 307 (368)
T ss_pred hcccCCCCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHc-CCcccCCchhcC-ceEEEEECC--CC
Confidence 1112456777777777888766432 34566777788888887765 11111 10 111 122333322 11
Q ss_pred cchhhHHHHHHHHHHHcCcEEeec----CCEEEEeCCcccCHHHHHHHHHhhhccc
Q psy8199 594 EQIETFSKKFFVAALKNELLLRPI----GNTVYLMPPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 594 ~~~~~~~~~~~~~l~~~Gi~~~~~----~~~lR~~p~~~~t~~~i~~~~~~l~~~~ 645 (965)
. ......+.+.|.++||.++++ .+.+|++.....+.++++.+++.+.+.+
T Consensus 308 ~--~~~~~~l~~~L~~~gi~v~~g~~~~~~~iRis~~~~~t~edi~~~l~~L~~~l 361 (368)
T PRK13479 308 P--AYDFKEFYERLKEQGFVIYPGKLTQVDTFRIGCIGDVDAADIRRLVAAIAEAL 361 (368)
T ss_pred C--CcCHHHHHHHHHHCCEEEecCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHH
Confidence 0 001346888899999999874 2589998655679999999999887654
|
|
| >cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT) | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.2e-14 Score=160.46 Aligned_cols=331 Identities=14% Similarity=0.080 Sum_probs=187.3
Q ss_pred cccccccccchhccCCCCCHHHHHHHHHHHh-hcc--cc-ccCCCCc---HHHHH-HHHHHHhhcCCCCCeEEEcCChhH
Q psy8199 254 KRYLDAISSWWVNLFGHSNSYINKALKNQLN-KLE--HV-MLSNLTH---KPVIK-LSEKLSSLTQYKLGHCFYGSDGAS 325 (965)
Q Consensus 254 ~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~-~~~--~~-~~~~~~~---~~~~~-la~~l~~~~~~~~~~v~~~~sGse 325 (965)
+++|.+..+-. + -+|+|.+|+.+.+. ... .. ....... +..++ .++.++++++.....+++ +||++
T Consensus 19 ~~~~~~~~~~~--~---~~~~v~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~v~~-~sgt~ 92 (402)
T cd00378 19 RETLELIASEN--F---TSPAVMEAMGSDLTNKYAEGYPGKRYYGGCEYVDEIEDLAIERAKKLFGAEYANVQP-HSGSQ 92 (402)
T ss_pred HhCeeeeccCC--c---CCHHHHHHhcccccccccCCCCCCcccCCchHHHHHHHHHHHHHHHHhCCCceeeec-CCcHH
Confidence 56788766532 2 38999999987652 221 11 1101112 22233 334566777654434444 57999
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCC--CCCCCCCChhHH
Q psy8199 326 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDS--RNINKGNSANEI 403 (965)
Q Consensus 326 A~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 403 (965)
|+..++..... ++++|++.++.|.+....... .. ..........++.+.. .+.
T Consensus 93 a~~~~l~~l~~--------~Gd~Vl~~~~~~~~~~~~~~~-~~-------~~~~g~~~~~~~~~~~~~~~~--------- 147 (402)
T cd00378 93 ANLAVYFALLE--------PGDTIMGLDLSHGGHLTHGSF-TK-------VSASGKLFESVPYGVDPETGL--------- 147 (402)
T ss_pred HHHHHHHHhcC--------CCCEEEEecCccCcccccccc-cc-------ccccceeEEEecCCcCcccCC---------
Confidence 99999887643 567899999988665221100 00 0000011223333211 111
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEE-ccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccc-cCCCcccccccccccC
Q psy8199 404 ARCAIFDLEILLKKNHNKIAAIII-EPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIA-VGCGRTGKFFACEHAE 481 (965)
Q Consensus 404 ~~~d~~~le~~l~~~~~~~aaii~-ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~-tg~gr~G~~~~~~~~~ 481 (965)
.|++++++++.+. ++.+|++ +| . .|...+ +++|.++|++||+++|+||+| .|+...|... . ...
T Consensus 148 --id~~~l~~~i~~~--~~~~v~~~~~-~---~~~~~~----~~~I~~l~~~~~~~li~D~a~~~g~~~~g~~~-~-~~~ 213 (402)
T cd00378 148 --IDYDALEKMALEF--KPKLIVAGAS-A---YPRPID----FKRFREIADEVGAYLLVDMAHVAGLVAGGVFP-N-PLP 213 (402)
T ss_pred --cCHHHHHHHHHhC--CCCEEEecCc-c---cCCCcC----HHHHHHHHHhcCCEEEEEccchhhhhhcccCC-C-ccc
Confidence 3788898888642 2334444 44 2 244444 889999999999999999996 4432222111 1 111
Q ss_pred CCccee--eeccccCCCcccceeeeecH-HHHHhhhccCCcccccccCCCCC-CHHHHHHHHHHHHHHhc---ccHHHHH
Q psy8199 482 IWPDFL--CLSKGITGGYLPLSLVMTTD-KIYNSIYYKNNINIFLHSHSYSG-NPLACCAALATLEIFNK---DNILQRI 554 (965)
Q Consensus 482 ~~pDiv--t~sK~l~gG~~pig~v~~~~-~i~~~~~~~~~~~~~~~~~t~~~-~~~~~aaa~a~L~~~~~---~~~~~~~ 554 (965)
..|++ +++|+++| ++.|++++++ ++++.+... ...+.++. ++..++++..++..... ++..+++
T Consensus 214 -~~dv~~~s~sK~l~G--~~gg~i~~~~~~~~~~l~~~------~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~ 284 (402)
T cd00378 214 -GADVVTTTTHKTLRG--PRGGLILTRKGELAKKINSA------VFPGLQGGPHLHVIAAKAVALKEALEPEFKAYAKQV 284 (402)
T ss_pred -CCcEEEeccccCCCC--CCceEEEeccHHHHHHHHHH------hCccccCCchHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 35765 57899955 6889988876 888777541 11111222 22333333344443322 3456778
Q ss_pred HHHHHHHHHHHHcccCCCceeee-e-ceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEee-----------cCCEE
Q psy8199 555 SQDMKKITKALTSLITHPKIINF-R-QKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRP-----------IGNTV 621 (965)
Q Consensus 555 ~~~~~~l~~~L~~l~~~~~i~~v-~-g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~-----------~~~~l 621 (965)
+++.+++.+.|.++ ++..+ . ..+.++++.+. ..+. ....+.+.|.++||.+.+ ..+.+
T Consensus 285 ~~~~~~l~~~L~~~----g~~~~~~~~~~~~v~v~~~-~~~~----~~~~~~~~l~~~gI~v~~~~~p~~~~~~~~~~~l 355 (402)
T cd00378 285 VENAKALAEALKER----GFKVVSGGTDNHLVLVDLR-PKGI----TGKAAEDALEEAGITVNKNTLPWDPSSPFVPSGI 355 (402)
T ss_pred HHHHHHHHHHHHhC----CCeEeecCCCCeEEEEeCC-ccCC----CHHHHHHHHHHcCcEEcCCcCCCCCCCCCCCCee
Confidence 88888888888765 23222 1 23556656653 1111 123456678889999963 12579
Q ss_pred EEeCCcc----cCHHHHHHHHHhhhccccc
Q psy8199 622 YLMPPYI----LNKNEIQHMTSAIFQTFNE 647 (965)
Q Consensus 622 R~~p~~~----~t~~~i~~~~~~l~~~~~~ 647 (965)
|+++... +++++++.+++.+.+.+.+
T Consensus 356 Ri~~~~~~~~~~~~~di~~~~~~l~~~~~~ 385 (402)
T cd00378 356 RIGTPAMTTRGMGEEEMEEIADFIARALKD 385 (402)
T ss_pred EecCHHHHHhCCCHHHHHHHHHHHHHHHhc
Confidence 9987664 4789999999988765543
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites. |
| >PRK08629 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.8e-14 Score=162.52 Aligned_cols=198 Identities=12% Similarity=0.108 Sum_probs=149.0
Q ss_pred cCCCCCCCCCCCCCCcCCCCcccccCCCHHHHHHHHHHHHHCC--CCEEEEeeccCCCCcccHHHHHHHHHHHHhc----
Q psy8199 689 TGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDG--ATRFCMGAAWRELKDRDLDNIENMICEVKKI---- 762 (965)
Q Consensus 689 s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g--~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~---- 762 (965)
-..|+..|.||.|.+..... ...+ .-.+.+.++++...+.| +..+++.||. |.. . .+.+.+++..+++.
T Consensus 59 IPFC~~~C~yC~f~~~~~~~-~~~~-~Y~~~L~~Ei~~~~~~~~~~~siy~GGGT-Ps~-l-~~~L~~ll~~i~~~f~i~ 133 (433)
T PRK08629 59 VPFCHTLCPYCSFHRFYFKE-DKAR-AYFISLRKEMEMVKELGYDFESMYVGGGT-TTI-L-EDELAKTLELAKKLFSIK 133 (433)
T ss_pred eCCccCcCCCCCCcCcCCCc-chHH-HHHHHHHHHHHHHHhcCCceEEEEECCCc-ccc-C-HHHHHHHHHHHHHhCCCc
Confidence 36699999999988642111 1111 12577888887666554 5667776553 422 2 46677777777652
Q ss_pred CcEeEEecCCCCHHHHHHHHHhCCCeEeccCCC-CHHHHhcccCCCCHHHH---HHHHHHHHHcCCceeeeEEEec-CCC
Q psy8199 763 GLETCLTLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENR---LNTLKNVRNVGINICCGGIIGL-SES 837 (965)
Q Consensus 763 ~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~~es-~~~~~~~i~~~~~~~~~---~~~i~~~~~~Gi~v~~~~i~Gl-~et 837 (965)
.+.+.+++..++++.++.|+++ ++++++|+|| ++++++.+++.++.+.. ++.++.+++.+..+++.+|+|+ |||
T Consensus 134 eis~E~~P~~lt~e~L~~l~~~-vnrlsiGVQS~~d~vLk~~gR~h~~~~~~~~~~~l~~~~~~~~~v~~DlI~GlPgqT 212 (433)
T PRK08629 134 EVSCESDPNHLDPPKLKQLKGL-IDRLSIGVQSFNDDILKMVDRYEKFGSGQETFEKIMKAKGLFPIINVDLIFNFPGQT 212 (433)
T ss_pred eEEEEeCcccCCHHHHHHHHHh-CCeEEEecCcCCHHHHHHcCCCCChhHHHHHHHHHHHHhccCCeEEEEEEccCCCCC
Confidence 3455678999999999999999 9999999999 99999999998876555 5555555444456899999999 699
Q ss_pred HHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCC---CCCCCHHHHHHHHHHHHHHCC
Q psy8199 838 RDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYG---SSILDPLEFIRTIAVARITMP 894 (965)
Q Consensus 838 ~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~---~~~~~~~~~~~~ia~~R~~lp 894 (965)
.+++.++++.+.+++ ++.|.++++++.|+|.... .+.++.++..++..+++..+.
T Consensus 213 ~e~~~~~l~~~~~l~--p~~is~y~L~~~~~t~~~~~~~~~~p~~d~~~~~~~~~~~~l~ 270 (433)
T PRK08629 213 DEVLQHDLDIAKRLD--PRQITTYPLMKSHQTRKSVKGSLGASQKDNERQYYQIINELFG 270 (433)
T ss_pred HHHHHHHHHHHHhCC--CCEEEEccceeccCchhhhcCCCCCcCHHHHHHHHHHHHHHHC
Confidence 999999999999999 9999999999999997542 234566677778888877775
|
|
| >TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.8e-14 Score=160.56 Aligned_cols=241 Identities=15% Similarity=0.200 Sum_probs=158.6
Q ss_pred cCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCc
Q psy8199 291 LSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQ 370 (965)
Q Consensus 291 ~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~ 370 (965)
...+.++...+++++++++.+ .+.+++++||++|+..+++.... ++++|++.... ||.+.....
T Consensus 48 y~r~~~p~~~~le~~la~l~g--~~~~~~~~sG~~Ai~~al~al~~--------~Gd~Vl~~~~~-~~~t~~~~~----- 111 (380)
T TIGR01325 48 YSRYANPTVAAFEERIAALEG--AERAVATATGMSAIQAALMTLLQ--------AGDHVVASRSL-FGSTVGFIS----- 111 (380)
T ss_pred eecCCCchHHHHHHHHHHHhC--CCcEEEECCHHHHHHHHHHHHhC--------CCCEEEEecCC-cchHHHHHH-----
Confidence 356778889999999999985 47889999999999999976532 45678776654 454322111
Q ss_pred CccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHH
Q psy8199 371 SFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVRE 450 (965)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~ 450 (965)
.........+.+++. .|+++++++++ +++++|++|. ++|+.|.+.+ +++|.+
T Consensus 112 ---~~~~~~g~~v~~v~~-----------------~d~~~l~~~i~---~~tklV~le~-p~np~g~~~d----l~~I~~ 163 (380)
T TIGR01325 112 ---EILPRFGIEVSFVDP-----------------TDLNAWEAAVK---PNTKLVFVET-PSNPLGELVD----IAALAE 163 (380)
T ss_pred ---HHHHHhCCEEEEECC-----------------CCHHHHHHhcC---CCceEEEEEC-CCCCCCeeeC----HHHHHH
Confidence 001111123444443 25677777774 3578899998 8999998876 999999
Q ss_pred HHHhcCCeEEEeccccCCCcccccccccccCCCcceee--eccccCCCcccc-eeeeecHHHHHhhhccCCcccccccCC
Q psy8199 451 ICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLC--LSKGITGGYLPL-SLVMTTDKIYNSIYYKNNINIFLHSHS 527 (965)
Q Consensus 451 l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt--~sK~l~gG~~pi-g~v~~~~~i~~~~~~~~~~~~~~~~~t 527 (965)
+|+++|+++|+||++..+ ... .-....+|+++ ++|.++|+...+ |++++++++++.+.... ..++.
T Consensus 164 la~~~gi~livD~a~~~~-~~~-----~pl~~g~Divv~S~sK~l~g~g~~~gG~vv~~~~~~~~l~~~~----~~~g~- 232 (380)
T TIGR01325 164 LAHAIGALLVVDNVFATP-VLQ-----QPLKLGADVVVYSATKHIDGQGRVMGGVIAGSEELMAEVAVYL----RHTGP- 232 (380)
T ss_pred HHHHcCCEEEEECCCccc-ccC-----CchhhCCCEEEeeccceecCCCCeEEEEEEeCHHHHHHHHHHH----HhhCC-
Confidence 999999999999998632 111 11234578885 789998744555 67778888877665410 01222
Q ss_pred CCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHccc-----CCCcee----------eeeceeEEEEEEEe
Q psy8199 528 YSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLI-----THPKII----------NFRQKGMIWAFDVI 589 (965)
Q Consensus 528 ~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~-----~~~~i~----------~v~g~G~~~~i~~~ 589 (965)
..+|..++.++..|+.+.. ..++..++..++.+.|++.. .+|++. ...|-|.|+.|++.
T Consensus 233 -~~~p~~a~~~l~~l~tl~~--r~~~~~~~a~~la~~L~~~p~v~~V~yp~l~s~~~~~~~~~~~~g~g~~~s~~l~ 306 (380)
T TIGR01325 233 -AMSPFNAWVLLKGLETLSL--RMQKQFDSALAIAEWLQAQPQVQAVYYPGLPDHPQHELARRQQSGGGTVIGFDVA 306 (380)
T ss_pred -CCCHHHHHHHHhccCcHHH--HHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEC
Confidence 3456777777776766543 35566667777777776542 134322 12467889999985
|
This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis. |
| >PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed | Back alignment and domain information |
|---|
Probab=99.62 E-value=3e-14 Score=157.50 Aligned_cols=203 Identities=18% Similarity=0.267 Sum_probs=153.2
Q ss_pred CCeEEEeEeEeeccCCCCCCCCCCCCCCcCCCCcccccCCCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHH
Q psy8199 676 ANEIELAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENM 755 (965)
Q Consensus 676 g~~~~~~~~i~~~s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~ 755 (965)
|+.+. +.-+++ |.+|+.+|.||..... .......+.++.+++.+.++.+.+.|++.|.|+||+ |+...+ +.++
T Consensus 13 ~r~~~-~l~i~v-T~~Cnl~C~yC~~~~~-~~~~~~~~~ls~eei~~~i~~~~~~gi~~I~~tGGE-Pll~~~---l~~l 85 (331)
T PRK00164 13 GRKFT-YLRISV-TDRCNFRCTYCMPEGY-LPFLPKEELLSLEEIERLVRAFVALGVRKVRLTGGE-PLLRKD---LEDI 85 (331)
T ss_pred CCccC-eEEEEE-cCCcCcCCCCCCCccC-CCCCCccccCCHHHHHHHHHHHHHCCCCEEEEECCC-CcCccC---HHHH
Confidence 55554 344667 9999999999976531 111123456899999999999989999999998865 666544 4555
Q ss_pred HHHHHhc--CcEeEE-ecCCCCHHHHHHHHHhCCCeEeccCCC-CHHHHhcccCCCCHHHHHHHHHHHHHcCC-ceeeeE
Q psy8199 756 ICEVKKI--GLETCL-TLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGI-NICCGG 830 (965)
Q Consensus 756 ~~~i~~~--~~~i~~-~~~~~~~e~l~~Lk~aG~~~i~i~~es-~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi-~v~~~~ 830 (965)
++.+++. ...+.+ ++|.+..+.++.|+++|++.+.+++++ +++.++.+.+..++++++++++.++++|+ .+...+
T Consensus 86 i~~i~~~~~~~~i~itTNG~ll~~~~~~L~~agl~~i~ISlds~~~e~~~~i~~~~~~~~vl~~i~~~~~~g~~~v~i~~ 165 (331)
T PRK00164 86 IAALAALPGIRDLALTTNGYLLARRAAALKDAGLDRVNVSLDSLDPERFKAITGRDRLDQVLAGIDAALAAGLTPVKVNA 165 (331)
T ss_pred HHHHHhcCCCceEEEEcCchhHHHHHHHHHHcCCCEEEEEeccCCHHHhccCCCCCCHHHHHHHHHHHHHCCCCcEEEEE
Confidence 5555543 223332 445555678999999999999999999 99999999998999999999999999999 888777
Q ss_pred EEecCCCHHHHHHHHHHHHhcCCCCCceeeccccccCCC-CCCCCCCCCHHHHHHHHHH
Q psy8199 831 IIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGT-PLYGSSILDPLEFIRTIAV 888 (965)
Q Consensus 831 i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT-~l~~~~~~~~~~~~~~ia~ 888 (965)
++-.|.+.+++.+.++++++++ . .+.+..|+|.... .+......+.+++.+.+..
T Consensus 166 vv~~g~n~~ei~~l~~~~~~~g--v-~v~~ie~~p~~~~~~~~~~~~~~~~~~~~~l~~ 221 (331)
T PRK00164 166 VLMKGVNDDEIPDLLEWAKDRG--I-QLRFIELMPTGEGNEWFRKHHLSGAEIRARLAE 221 (331)
T ss_pred EEECCCCHHHHHHHHHHHHhCC--C-eEEEEEeeECCCCcchhhhcCCCHHHHHHHHHh
Confidence 6645889999999999999998 4 4667778887654 3334445677777776654
|
|
| >PRK00011 glyA serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.2e-13 Score=156.49 Aligned_cols=331 Identities=13% Similarity=0.095 Sum_probs=188.5
Q ss_pred cccccccccchhccCCCCCHHHHHHHHHHHhh-cccccc-CCC--CcHHHHHH----HHHHHhhcCCCCCeEEEcCChhH
Q psy8199 254 KRYLDAISSWWVNLFGHSNSYINKALKNQLNK-LEHVML-SNL--THKPVIKL----SEKLSSLTQYKLGHCFYGSDGAS 325 (965)
Q Consensus 254 ~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~-~~~~~~-~~~--~~~~~~~l----a~~l~~~~~~~~~~v~~~~sGse 325 (965)
+.+|++.++-.. -+|+|.+|+...+.. .+.... ..+ ..+....+ .+.+++.++.....+++ +||++
T Consensus 25 ~~~~~l~~~~n~-----~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~~~~i~~-~sgt~ 98 (416)
T PRK00011 25 EEHIELIASENF-----VSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGAEYANVQP-HSGSQ 98 (416)
T ss_pred hcCeeeecccCc-----CCHHHHHHHhchhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhCCCceeeec-CCchH
Confidence 567888776332 589999998776532 111110 111 11223333 33678888755444544 57899
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCcccc--ccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHH
Q psy8199 326 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGA--LAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEI 403 (965)
Q Consensus 326 A~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (965)
|+..++.... .++++|++..+.|.+..... ....+ ....+..++.....+
T Consensus 99 al~~~l~~l~--------~~gd~Vl~~~~~~~~~~~~~~~~~~~~----------~g~~~~~~~~~~~~~---------- 150 (416)
T PRK00011 99 ANAAVYFALL--------KPGDTILGMDLAHGGHLTHGSPVNFSG----------KLYNVVSYGVDEETG---------- 150 (416)
T ss_pred HHHHHHHHhc--------CCCCEEEEeccccCCcccccccccccc----------ceeeEeecCcCcccC----------
Confidence 9999887663 25678999988876542111 11111 000122222211001
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCC
Q psy8199 404 ARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIW 483 (965)
Q Consensus 404 ~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~ 483 (965)
..|++++++++++. ++.+|++.. +..|...+ +++|.++|++||+++|+||+|. +|..+........+ .
T Consensus 151 -~~d~~~l~~~i~~~--~~k~v~~~~---~~~~~~~~----~~~I~~la~~~~~~livD~a~~-~g~~~~g~~~~~~~-~ 218 (416)
T PRK00011 151 -LIDYDEVEKLALEH--KPKLIIAGA---SAYSRPID----FKRFREIADEVGAYLMVDMAHI-AGLVAAGVHPSPVP-H 218 (416)
T ss_pred -CcCHHHHHHHHHhc--CCCEEEECC---CcCCCccC----HHHHHHHHHHcCCEEEEECcch-hcccccCccCCCCC-C
Confidence 14788999888642 334455532 23344444 8999999999999999999985 33332110011112 3
Q ss_pred ccee--eeccccCCCcccceeeeec-HHHHHhhhccCCcccccccCCCCC-CHHHHHHHHHH-HHHHhc--ccHHHHHHH
Q psy8199 484 PDFL--CLSKGITGGYLPLSLVMTT-DKIYNSIYYKNNINIFLHSHSYSG-NPLACCAALAT-LEIFNK--DNILQRISQ 556 (965)
Q Consensus 484 pDiv--t~sK~l~gG~~pig~v~~~-~~i~~~~~~~~~~~~~~~~~t~~~-~~~~~aaa~a~-L~~~~~--~~~~~~~~~ 556 (965)
.|++ +++|+++| .+.|+++++ +++++.+... ...++++. ....++++..+ ++.+.+ ++..++.++
T Consensus 219 ~di~~~S~~K~l~g--~~gg~i~~~~~~~~~~l~~~------~~~~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~ 290 (416)
T PRK00011 219 ADVVTTTTHKTLRG--PRGGLILTNDEELAKKINSA------VFPGIQGGPLMHVIAAKAVAFKEALEPEFKEYAQQVVK 290 (416)
T ss_pred CcEEEecCCcCCCC--CCceEEEeCCHHHHHHHHHH------hCccccCCccHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 5766 57899965 578889885 6888777541 11112222 22233333333 333322 346788888
Q ss_pred HHHHHHHHHHcccCCCceeeee--ceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEee----c-------CCEEEE
Q psy8199 557 DMKKITKALTSLITHPKIINFR--QKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRP----I-------GNTVYL 623 (965)
Q Consensus 557 ~~~~l~~~L~~l~~~~~i~~v~--g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~----~-------~~~lR~ 623 (965)
+.+++++.|+++ ++.... ..+.++.+.+. ..+ .....+.+.|.++||.+.. . .+.+|+
T Consensus 291 ~~~~l~~~L~~~----g~~~~~~~~~~~~~~i~~~-~~~----~~~~~~~~~L~~~GI~v~~~~~p~~~~~~~~~~~~Ri 361 (416)
T PRK00011 291 NAKALAEALAER----GFRVVSGGTDNHLVLVDLR-SKG----LTGKEAEAALEEANITVNKNAVPFDPRSPFVTSGIRI 361 (416)
T ss_pred HHHHHHHHHHhC----CCeeeecCCCCeEEEEeCc-ccC----CCHHHHHHHHHHcCcEEccCcCCCCCCCCCCCCceEe
Confidence 999999998775 232221 23456666553 110 0134577788899999872 1 245888
Q ss_pred eCC----cccCHHHHHHHHHhhhccccc
Q psy8199 624 MPP----YILNKNEIQHMTSAIFQTFNE 647 (965)
Q Consensus 624 ~p~----~~~t~~~i~~~~~~l~~~~~~ 647 (965)
... ..+++++++.+++.+.+.+..
T Consensus 362 ~~~~~~~~~~t~~di~~l~~~l~~~~~~ 389 (416)
T PRK00011 362 GTPAITTRGFKEAEMKEIAELIADVLDN 389 (416)
T ss_pred cCHHHhhcCcCHHHHHHHHHHHHHHHhc
Confidence 542 256799999999988765443
|
|
| >PLN02651 cysteine desulfurase | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.8e-14 Score=160.65 Aligned_cols=320 Identities=13% Similarity=0.076 Sum_probs=193.1
Q ss_pred cccccccchhccCCCCCHHHHHHHHHHHhhccccccC------CCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHH
Q psy8199 256 YLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLS------NLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEV 329 (965)
Q Consensus 256 ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~------~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~ 329 (965)
|||..+. +.-++++.+++.+.+......... ....+...++.++++++++.+.+.++|++|||+|+..
T Consensus 2 Yld~a~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~v~~t~~~t~a~~~ 75 (364)
T PLN02651 2 YLDMQAT------TPIDPRVLDAMLPFLIEHFGNPHSRTHLYGWESEDAVEKARAQVAALIGADPKEIIFTSGATESNNL 75 (364)
T ss_pred cccCcCC------CCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHH
Confidence 7887654 236899999998877542110000 0113345678888999998767799999999999999
Q ss_pred HHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHH
Q psy8199 330 ALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIF 409 (965)
Q Consensus 330 Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 409 (965)
++..+..... .++++|++.+..|+........+ ......+..+|.... +. .|++
T Consensus 76 ~l~~~~~~~~----~~g~~vl~~~~~h~s~~~~~~~~----------~~~g~~v~~v~~~~~-~~-----------~d~~ 129 (364)
T PLN02651 76 AIKGVMHFYK----DKKKHVITTQTEHKCVLDSCRHL----------QQEGFEVTYLPVKSD-GL-----------VDLD 129 (364)
T ss_pred HHHHHHHhcc----CCCCEEEEcccccHHHHHHHHHH----------HhcCCEEEEEccCCC-Cc-----------CCHH
Confidence 9987644211 24567777665554431111000 001113444444321 11 2678
Q ss_pred HHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcceeee
Q psy8199 410 DLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCL 489 (965)
Q Consensus 410 ~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~ 489 (965)
+++++++ +++.+|++.. +++++|.+.| +++|.++|++||+++++|.+|+ +|.. .+......+|++++
T Consensus 130 ~l~~~i~---~~t~lv~v~~-~~n~tG~~~~----l~~I~~~~~~~g~~~~vD~a~~-~g~~----~~~~~~~~~D~~~~ 196 (364)
T PLN02651 130 ELAAAIR---PDTALVSVMA-VNNEIGVIQP----VEEIGELCREKKVLFHTDAAQA-VGKI----PVDVDDLGVDLMSI 196 (364)
T ss_pred HHHHhcC---CCcEEEEEEC-CCCCceeccc----HHHHHHHHHHcCCEEEEEcchh-hCCc----ccCcccCCCCEEEe
Confidence 8888885 3467777777 7899999988 9999999999999999999997 4421 22223345799988
Q ss_pred c--cccCCCcccceeeeecHHHHHhhhcc---CCcccccccCCCCCCHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHH
Q psy8199 490 S--KGITGGYLPLSLVMTTDKIYNSIYYK---NNINIFLHSHSYSGNPLACCAALATLEIFNK--DNILQRISQDMKKIT 562 (965)
Q Consensus 490 s--K~l~gG~~pig~v~~~~~i~~~~~~~---~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~--~~~~~~~~~~~~~l~ 562 (965)
| | + +|...+|+++.+++....+... +........ .+.|..++.+..++|+.+.+ +...++.+++.+++.
T Consensus 197 s~hK-~-~gp~G~g~l~v~~~~~~~l~p~~~g~~~~~~~~~--GT~~~~~~~~l~~al~~~~~~~~~i~~~~~~l~~~l~ 272 (364)
T PLN02651 197 SGHK-I-YGPKGVGALYVRRRPRVRLEPLMSGGGQERGRRS--GTENTPLVVGLGAACELAMKEMDYDEKHMKALRERLL 272 (364)
T ss_pred chhh-h-CCCCceEEEEEcCCCCCCCCccccCCCccCCccC--CCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 5 6 5 4434688888888765544321 111000111 23456677778888887753 234566666777777
Q ss_pred HHHHcccCCCceeeee------ceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec-------------------
Q psy8199 563 KALTSLITHPKIINFR------QKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI------------------- 617 (965)
Q Consensus 563 ~~L~~l~~~~~i~~v~------g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~------------------- 617 (965)
+.|++. .+++.... ....+..|.+. . . ....+...|.+ |.++.+
T Consensus 273 ~~l~~~--~~~~~i~~~~~~~~~~~~i~~~~~~--~-~----~~~~~~~~L~~--i~v~~g~~c~~~~~~~~~~~~~~g~ 341 (364)
T PLN02651 273 NGLRAK--LGGVRVNGPRDPEKRYPGTLNLSFA--Y-V----EGESLLMGLKE--VAVSSGSACTSASLEPSYVLRALGV 341 (364)
T ss_pred HHHHhh--CCCEEEECCCCcccCcCCEEEEEeC--C-C----CHHHHHHHhCC--EEEEchhhcCCCCCCcCHHHHHcCC
Confidence 766542 23332211 11335555553 1 0 12345555543 555311
Q ss_pred -----CCEEEEeCCcccCHHHHH
Q psy8199 618 -----GNTVYLMPPYILNKNEIQ 635 (965)
Q Consensus 618 -----~~~lR~~p~~~~t~~~i~ 635 (965)
.+.+|++++...|++||+
T Consensus 342 ~~~~~~~~vR~S~~~~~t~~did 364 (364)
T PLN02651 342 PEEMAHGSLRLGVGRFTTEEEVD 364 (364)
T ss_pred ChHHhCceEEEEcCCCCCHHHcC
Confidence 258999999999999874
|
|
| >COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.8e-14 Score=150.27 Aligned_cols=219 Identities=15% Similarity=0.236 Sum_probs=164.3
Q ss_pred EEEeEeEeeccCCCCC-CCCCCCCCC------cCCCCcc------cccCCCHHHHHHHHHHHHHCCCC----EEEEeecc
Q psy8199 679 IELAVLLSIKTGGCTE-DCGYCPQST------HYNTEIT------ATKILSIESVITAAQKAKSDGAT----RFCMGAAW 741 (965)
Q Consensus 679 ~~~~~~i~~~s~~C~~-~C~fC~~~~------~~~~~~~------~~~~~~~eei~~~~~~~~~~g~~----~i~l~~g~ 741 (965)
+.+.+++- +-.+||+ +|.||...- .+....+ ..+.-+-.|+...++++...|.. ++.|.||.
T Consensus 65 vaVVaVmt-~p~~CPHg~CvfCpgg~~~~spQSytg~ep~~~R~~~~~ydpY~q~~~Rl~qL~~igh~~~KvEliimGGT 143 (515)
T COG1243 65 VAVVAVMT-SPHGCPHGRCVFCPGGPDKDSPQSYTGEEPAALRAIKNRYDPYEQVRARLKQLETIGHTSDKVELIIMGGT 143 (515)
T ss_pred ceEEEEec-CCCCCCCCeEEeCCCCCCCCCCcccCCCCchhhhHhhccCCcHHHHHHHHHHHHHcCCCcceEEEEEeccc
Confidence 44434332 2689997 999997662 1111100 11223457888888888888732 56777776
Q ss_pred CCCCcccHHHHHHHH----HHHH-------------------hcCcEeEEecCCCCHHHHHHHHHhCCCeEeccCCC-CH
Q psy8199 742 RELKDRDLDNIENMI----CEVK-------------------KIGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDT-SP 797 (965)
Q Consensus 742 ~~~~~~~~~~~~~~~----~~i~-------------------~~~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~~es-~~ 797 (965)
++ ..+.++=..++ +.+. -.|+.+.+.+...+++.++.|++.|++++.+|+|| .+
T Consensus 144 Ft--a~~~~yqe~Fi~~~~~amn~f~~~le~a~~~ne~~~~r~vgitiETRPD~~~ee~ld~mlkyG~TrVELGVQSiyd 221 (515)
T COG1243 144 FT--ALSLEYQEWFLKVALKAMNDFGYDLEEAQRKNETAELRCVGITIETRPDYIDEEHLDQMLKYGVTRVELGVQSIYD 221 (515)
T ss_pred cc--CCCHHHHHHHHHHHHHhhhccchhHHHHHHhhcccccceeEEEEecCccccCHHHHHHHHhcCCcEEEEeeeeHHH
Confidence 54 33333322222 2222 13577888999999999999999999999999999 89
Q ss_pred HHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEec-CCCHHHHHHHHHHHHhcCC-CCCceeeccccccCCCCCCC--
Q psy8199 798 KLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL-SESRDQRAELIFQLANLNP-YPESVPINNLVQIKGTPLYG-- 873 (965)
Q Consensus 798 ~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl-~et~ed~~~~l~~l~~l~~-~~~~i~~~~~~P~~gT~l~~-- 873 (965)
++++...++|+.++..++.+.++++|++++.|+|.|| |.+.|--+++.+.+-+.+. .|+.+.+++-...+||+|++
T Consensus 222 ~Vl~~~~RGHtvedv~~a~rLlKd~GfKv~~HiMpGLPgs~~erDl~~f~~~f~~p~f~PDmlKIYPtLVi~gT~Ly~mw 301 (515)
T COG1243 222 DVLERTKRGHTVEDVVEATRLLKDAGFKVGYHIMPGLPGSDFERDLESFREIFEDPRFRPDMLKIYPTLVIEGTELYEMW 301 (515)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHhcCcEEEEEecCCCCCCChHHHHHHHHHHHhCCCCCCCeEEEeeeEEECCchHHHHH
Confidence 9999999999999999999999999999999999999 5666655555555555444 38999999999999999984
Q ss_pred ----CCCCCHHHHHHHHHHHHHHCCCCceecc
Q psy8199 874 ----SSILDPLEFIRTIAVARITMPTSRIRMS 901 (965)
Q Consensus 874 ----~~~~~~~~~~~~ia~~R~~lp~~~i~i~ 901 (965)
..|.+.++.+++++.+-.++|++ +++.
T Consensus 302 k~G~Ykpy~~EEaVeli~~i~~~~p~w-vRV~ 332 (515)
T COG1243 302 KRGLYKPYTTEEAVELIVEIYRLEPKW-VRVI 332 (515)
T ss_pred HcCCCCCCCHHHHHHHHHHHHHhcCCC-cEEE
Confidence 58889999999999999999987 5444
|
|
| >COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.4e-14 Score=160.02 Aligned_cols=201 Identities=14% Similarity=0.222 Sum_probs=155.6
Q ss_pred cCCCCCCCCCCCCCCcCCCCcccccCCCHHHHHHHHHHHHHC-----CCCEEEEeeccCCCCcccHHHHHHHHHHHHhc-
Q psy8199 689 TGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSD-----GATRFCMGAAWRELKDRDLDNIENMICEVKKI- 762 (965)
Q Consensus 689 s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~-----g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~- 762 (965)
-..|...|.||.++........... .=.+-+.++++..... .++.+++.||.. .....+.+..++..+++.
T Consensus 41 iPFC~~~C~YC~fn~~~~~~~~~~~-~Y~~aL~~Ei~~~~~~~~~~~~v~ti~~GGGTP--slL~~~~l~~ll~~l~~~~ 117 (416)
T COG0635 41 IPFCVSKCPYCDFNSHVTKRGQPVD-EYLDALLEEIELVAALLGGQREVKTIYFGGGTP--SLLSPEQLERLLKALRELF 117 (416)
T ss_pred cccccccCCCCCCeeeccCCCChHH-HHHHHHHHHHHHHHhhcCCCCeEEEEEECCCcc--ccCCHHHHHHHHHHHHHhc
Confidence 4679999999999875443310000 0124455555444333 267888877743 344556666666666541
Q ss_pred -------CcEeEEecCCCCHHHHHHHHHhCCCeEeccCCC-CHHHHhcccCCCCHHHHHHHHHHHHHcCC-ceeeeEEEe
Q psy8199 763 -------GLETCLTLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGI-NICCGGIIG 833 (965)
Q Consensus 763 -------~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~~es-~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi-~v~~~~i~G 833 (965)
-+.+.++++.++.+.++.|+++|++++++|+|| ++++.+.+.+.++.++..++++.+++.|+ .++..+|||
T Consensus 118 ~~~~~~~EitiE~nP~~~~~e~~~~l~~~GvNRiSlGVQsf~~~~lk~lgR~h~~~~~~~a~~~~~~~g~~~in~DLIyg 197 (416)
T COG0635 118 NDLDPDAEITIEANPGTVEAEKFKALKEAGVNRISLGVQSFNDEVLKALGRIHDEEEAKEAVELARKAGFTSINIDLIYG 197 (416)
T ss_pred ccCCCCceEEEEeCCCCCCHHHHHHHHHcCCCEEEeccccCCHHHHHHhcCCCCHHHHHHHHHHHHHcCCCcEEEEeecC
Confidence 233455889999999999999999999999999 99999999999999999999999999999 799999999
Q ss_pred c-CCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCCCC-----CCCHHHHHHHHHHHHHHCC
Q psy8199 834 L-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSS-----ILDPLEFIRTIAVARITMP 894 (965)
Q Consensus 834 l-~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~~~-----~~~~~~~~~~ia~~R~~lp 894 (965)
+ ++|.+++.++++.+.+++ |+.|+++.|.-.|+|++.... .++.++.+.+.......+-
T Consensus 198 lP~QT~~~~~~~l~~a~~l~--pdhis~y~L~~~p~t~~~~~~~~~~~lP~~d~~~~~~~~~~e~L~ 262 (416)
T COG0635 198 LPGQTLESLKEDLEQALELG--PDHLSLYSLAIEPGTKFAQRKIKGKALPDEDEKADMYELVEELLE 262 (416)
T ss_pred CCCCCHHHHHHHHHHHHhCC--CCEEEEeeeecCCCchhhhhcccCCCCcChHHHHHHHHHHHHHHH
Confidence 9 699999999999999999 999999999999999987532 3566666777777666664
|
|
| >PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation | Back alignment and domain information |
|---|
Probab=99.61 E-value=8.6e-15 Score=145.08 Aligned_cols=160 Identities=21% Similarity=0.359 Sum_probs=119.8
Q ss_pred EeeccCCCCCCCCCCCCCCcCCCCcccccCCCHHHHHHHHHHH-HHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHhcC
Q psy8199 685 LSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKA-KSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIG 763 (965)
Q Consensus 685 i~~~s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~-~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~~ 763 (965)
|++ |++|+++|.||..... ........++++++++.++++ .+.|...+.++ |++|+...+...++..+......+
T Consensus 1 i~~-~~~C~~~C~fC~~~~~--~~~~~~~~~~~e~i~~~~~~~~~~~~~~~i~~~-~gep~~~~~~~~~~~~~~~~~~~~ 76 (166)
T PF04055_consen 1 IET-TRGCNLNCSFCYYPRS--RRKNKPREMSPEEILEEIKELKQDKGVKEIFFG-GGEPTLHPDFIELLELLRKIKKRG 76 (166)
T ss_dssp EEE-ESEESS--TTTSTTTT--CCTCGCEECHHHHHHHHHHHHHHHTTHEEEEEE-SSTGGGSCHHHHHHHHHHHCTCTT
T ss_pred CEE-CcCcCccCCCCCCCcc--CCCcccccCCHHHHHHHHHHHhHhcCCcEEEEe-ecCCCcchhHHHHHHHHHHhhccc
Confidence 345 8999999999997753 112234458999999999999 58886666664 545655544444444444332124
Q ss_pred c--EeEEecCCCCHHHHHHHHHhCCCeEeccCCC-CHH-HHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEec-CCCH
Q psy8199 764 L--ETCLTLGMLNENQAYRLKKVGLDYYNHNLDT-SPK-LYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL-SESR 838 (965)
Q Consensus 764 ~--~i~~~~~~~~~e~l~~Lk~aG~~~i~i~~es-~~~-~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl-~et~ 838 (965)
. .+.++....+++.++.|+++|++.+.++++| +++ ..+.+.+..++++++++++.++++|++....+++|+ ++|.
T Consensus 77 ~~i~~~t~~~~~~~~~l~~l~~~~~~~i~~~l~s~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~i~~~~~~~~ 156 (166)
T PF04055_consen 77 IRISINTNGTLLDEELLDELKKLGVDRIRISLESLDEESVLRIINRGKSFERVLEALERLKEAGIPRVIIFIVGLPGEND 156 (166)
T ss_dssp EEEEEEEESTTHCHHHHHHHHHTTCSEEEEEEBSSSHHHHHHHHSSTSHHHHHHHHHHHHHHTTSETEEEEEEEBTTTSH
T ss_pred cceeeeccccchhHHHHHHHHhcCccEEecccccCCHHHhhhhhcCCCCHHHHHHHHHHHHHcCCCcEEEEEEEeCCCCH
Confidence 4 4455666667999999999999999999999 888 777777889999999999999999998566667777 7999
Q ss_pred HHHHHHHHHH
Q psy8199 839 DQRAELIFQL 848 (965)
Q Consensus 839 ed~~~~l~~l 848 (965)
+|+.++++++
T Consensus 157 ~e~~~~~~~i 166 (166)
T PF04055_consen 157 EEIEETIRFI 166 (166)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHhCcC
Confidence 9999999875
|
Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A .... |
| >KOG0633|consensus | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.9e-14 Score=137.70 Aligned_cols=287 Identities=16% Similarity=0.154 Sum_probs=193.3
Q ss_pred HHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhccc
Q psy8199 300 IKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSL 379 (965)
Q Consensus 300 ~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~ 379 (965)
.+++..+++..|...+.+....|..|.+++.||+.+. +|+++|+...++|..++..+....
T Consensus 72 k~ls~a~~~dkpLt~dnic~GvGsDE~ID~iiR~~c~-------PGkeKIl~cPPtysMY~v~A~iNd------------ 132 (375)
T KOG0633|consen 72 KRLSDALAQDKPLTSDNICVGVGSDELIDLIIRCVCD-------PGKEKILDCPPTYSMYVVDAAIND------------ 132 (375)
T ss_pred chhhhhcccCCCCCccceEEecCcHHHHHHHHhheec-------CCccceeecCCcceeEEEEeecCC------------
Confidence 4566666666776778999999999999999998877 799999999999988765443322
Q ss_pred CCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeE
Q psy8199 380 LNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHL 459 (965)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~ll 459 (965)
.+++.+|...++. .+.+++.+.++. .+.+.++++.+ +.|++|.+. ..+.+..|-+.-+ +.++
T Consensus 133 -~eVvkvpl~pdF~------------lnvdai~evl~~-ds~iK~~F~tS-PgNPtg~~i-k~~di~KiLe~p~--nglV 194 (375)
T KOG0633|consen 133 -AEVVKVPLNPDFS------------LNVDAIAEVLEL-DSKIKCIFLTS-PGNPTGSII-KEDDILKILEMPD--NGLV 194 (375)
T ss_pred -ceEEEecCCCCcc------------ccHHHHHHHHhc-cccceEEEEcC-CCCCCcccc-cHHHHHHHHhCCC--CcEE
Confidence 2456666543322 357777777764 34567666666 589999877 4555666655544 7999
Q ss_pred EEeccccCCCcccccccccccCCCccee---eeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHH
Q psy8199 460 IADEIAVGCGRTGKFFACEHAEIWPDFL---CLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACC 536 (965)
Q Consensus 460 I~DEv~tg~gr~G~~~~~~~~~~~pDiv---t~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~a 536 (965)
++||+|-.| +|......+..--|+++ ||||++|-.++++|+...+.++++.+.. .-..|+.+.++-.
T Consensus 195 VvDEAYidF--sg~~S~~~lV~kYpNLivlqTlSKsfGLAGiRvG~~~~~~~ia~iln~--------~KaPYNiS~~~s~ 264 (375)
T KOG0633|consen 195 VVDEAYIDF--SGVESRMKLVKKYPNLIVLQTLSKSFGLAGIRVGYGAFPLSIAEILNR--------AKAPYNISVAGSV 264 (375)
T ss_pred EEeeeeEee--ccccccchHhHhCCceeehhhhhhhcCcceeEeecccccHHHHHHHHh--------ccCCccccchhHH
Confidence 999999887 44333333334458887 5899666533899999999999988865 2356777777777
Q ss_pred HHHHHHH--HHh-cccHHHHHHHHHHHHHHHHHcccCCCceee--eeceeEEEEEEEeecCccchhhHHHHH-HHHHHHc
Q psy8199 537 AALATLE--IFN-KDNILQRISQDMKKITKALTSLITHPKIIN--FRQKGMIWAFDVIIEDPEQIETFSKKF-FVAALKN 610 (965)
Q Consensus 537 aa~a~L~--~~~-~~~~~~~~~~~~~~l~~~L~~l~~~~~i~~--v~g~G~~~~i~~~~~~~~~~~~~~~~~-~~~l~~~ 610 (965)
+|+++|. .+. -++..+.+.+...+|...|.++ |.+.. -....+|+.+++..++ ...+..+ .+.+..+
T Consensus 265 ~AL~Als~~n~kkme~~rdaiv~er~RL~keLt~v---~~~~~~~gg~daNFiLi~v~~~~----n~~akkly~q~at~~ 337 (375)
T KOG0633|consen 265 AALAALSDSNGKKMEDVRDAIVRERERLFKELTEV---PFLNDYPGGSDANFILIEVTGGD----NGMAKKLYKQDATKM 337 (375)
T ss_pred HHHHhcCcccchHHHHHHHHHHHHHHHHHHHhhcC---ccccCCCCcccccEEEEEEcCCC----cHHHHHHHHHHHHhc
Confidence 8888775 111 1234455555566666666655 33332 2335678888876222 2234444 4455688
Q ss_pred CcEEeecC------CEEEEeCCcccCHHHHHHHHHhhhc
Q psy8199 611 ELLLRPIG------NTVYLMPPYILNKNEIQHMTSAIFQ 643 (965)
Q Consensus 611 Gi~~~~~~------~~lR~~p~~~~t~~~i~~~~~~l~~ 643 (965)
||.++-.| +.+|++ ..++|+-.-+++.+++
T Consensus 338 gVvVRfrgse~~c~G~lRit---vGt~EentvL~k~~K~ 373 (375)
T KOG0633|consen 338 GVVVRFRGSEEGCKGYLRIT---VGTPEENTVLMKCLKQ 373 (375)
T ss_pred ceEEEEcCCccccceeEEEE---cCCcccchHHHHHHHh
Confidence 99998643 689999 6677777766666543
|
|
| >cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.3e-14 Score=158.04 Aligned_cols=240 Identities=15% Similarity=0.150 Sum_probs=163.9
Q ss_pred CCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcC
Q psy8199 292 SNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQS 371 (965)
Q Consensus 292 ~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~ 371 (965)
..+.++...+|+++++++.+ .+.+++++||++|+..+++.... ++++|++....|++........
T Consensus 35 ~r~~~p~~~~le~~la~l~g--~~~a~~~~sG~~Ai~~~l~~l~~--------~gd~Vl~~~~~y~~~~~~~~~~----- 99 (369)
T cd00614 35 SRIGNPTVDALEKKLAALEG--GEAALAFSSGMAAISTVLLALLK--------AGDHVVASDDLYGGTYRLFERL----- 99 (369)
T ss_pred ECCCChhHHHHHHHHHHHHC--CCCEEEEcCHHHHHHHHHHHHcC--------CCCEEEECCCCcchHHHHHHHH-----
Confidence 45678889999999999985 46788899999999999987643 5678999888887752111000
Q ss_pred ccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHH
Q psy8199 372 FKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREI 451 (965)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l 451 (965)
.......+.+++. .|+++++++++ +++.+|++|+ ++|++|.+.+ +++|.++
T Consensus 100 ----~~~~g~~~~~v~~-----------------~d~~~l~~~i~---~~~~~v~~e~-~~np~g~~~d----l~~i~~l 150 (369)
T cd00614 100 ----LPKLGIEVTFVDP-----------------DDPEALEAAIK---PETKLVYVES-PTNPTLKVVD----IEAIAEL 150 (369)
T ss_pred ----HhhcCeEEEEeCC-----------------CCHHHHHHhcC---CCCeEEEEEC-CCCCCCeecC----HHHHHHH
Confidence 0011112333332 25678888775 3578899998 8999998887 9999999
Q ss_pred HHhcCCeEEEeccccCCCcccccccccccCCCccee--eeccccCCCc-ccceeeeecH-HHHHhhhccCCcccccccCC
Q psy8199 452 CNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL--CLSKGITGGY-LPLSLVMTTD-KIYNSIYYKNNINIFLHSHS 527 (965)
Q Consensus 452 ~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDiv--t~sK~l~gG~-~pig~v~~~~-~i~~~~~~~~~~~~~~~~~t 527 (965)
|++||+++|+|+++.. +.. .......+|++ +++|.++|.. ...|++++++ ++++.+... ....+
T Consensus 151 a~~~g~~livD~t~~~-~~~-----~~~~~~g~Divv~S~tK~l~g~~~~~gG~v~~~~~~l~~~l~~~------~~~~g 218 (369)
T cd00614 151 AHEHGALLVVDNTFAT-PYL-----QRPLELGADIVVHSATKYIGGHSDVIAGVVVGSGEALIQRLRFL------RLALG 218 (369)
T ss_pred HHHcCCEEEEECCCcc-hhc-----CChhhhCCcEEEeccceeccCCCCceEEEEEeCcHHHHHHHHHH------HHhhC
Confidence 9999999999999852 211 11123356887 6789998632 4678888877 787777641 11123
Q ss_pred CCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcccC-----CCcee----------eeeceeEEEEEEEe
Q psy8199 528 YSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLIT-----HPKII----------NFRQKGMIWAFDVI 589 (965)
Q Consensus 528 ~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~~-----~~~i~----------~v~g~G~~~~i~~~ 589 (965)
...+|..+++++..|+.+. ...++..++.+++.+.|++... +|++. ...+.|.++.|++.
T Consensus 219 ~~~~p~~a~~~l~~l~tl~--~r~~~~~~na~~la~~L~~~~~v~~V~~p~l~~~~~~~~~~~~~~g~g~i~s~~l~ 293 (369)
T cd00614 219 TILSPFDAWLLLRGLKTLP--LRMERHSENALKVAEFLEKHPKVERVYYPGLPSHPQHELAKKQMSGYGGVFSFELK 293 (369)
T ss_pred CCCCHHHHHHHHcCCCCHH--HHHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCchHHHHHHhcCCCceEEEEEeC
Confidence 3467888887777775443 2466777788888888876531 33221 12467899999985
|
This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life. |
| >cd06450 DOPA_deC_like DOPA decarboxylase family | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.5e-13 Score=154.02 Aligned_cols=309 Identities=14% Similarity=0.033 Sum_probs=177.3
Q ss_pred HHHHHHHHHhhc-cccccCCCCcHHHHHHHHHHHhhcCCC--CCeEEEcCChhHHHHHHHHHHHHHHHh----cC-CCCc
Q psy8199 275 INKALKNQLNKL-EHVMLSNLTHKPVIKLSEKLSSLTQYK--LGHCFYGSDGASAVEVALKMSFHYWYN----KG-FLNK 346 (965)
Q Consensus 275 v~~av~~~~~~~-~~~~~~~~~~~~~~~la~~l~~~~~~~--~~~v~~~~sGseA~~~Al~~a~~~~~~----~g-~~~~ 346 (965)
+.+.+...++.. ..+.......+...+++++++++++.+ ...++|++||++|+..++.+++..... .+ .++.
T Consensus 15 ~~~~~~~~~n~~~~~y~~~~~~~~le~~~~~~~~~~~g~~~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~~~~~~~ 94 (345)
T cd06450 15 LLEMLTSAKNAIDFTWDESPAATEMEAEVVNWLAKLFGLPSEDADGVFTSGGSESNLLALLAARDRARKRLKAGGGRGID 94 (345)
T ss_pred HHHHHHHhcCCCCcccccCchhHHHHHHHHHHHHHHhCCCCCCCCEEEeCChhHHHHHHHHHHHHHhhhhhhcccccccC
Confidence 444554444432 222223344566677888888887643 347999999999999999988753211 00 1122
Q ss_pred eEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhC---CCcEE
Q psy8199 347 KKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKN---HNKIA 423 (965)
Q Consensus 347 ~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~---~~~~a 423 (965)
+.+|+....+|.+...+.... ...+..+|..... . .|+++|++++.+. +.++.
T Consensus 95 ~~~v~~~~~~h~~~~~~~~~~------------g~~~~~v~~~~~~-~-----------~d~~~l~~~i~~~~~~~~~~~ 150 (345)
T cd06450 95 KLVIVCSDQAHVSVEKAAAYL------------DVKVRLVPVDEDG-R-----------MDPEALEAAIDEDKAEGLNPI 150 (345)
T ss_pred CeEEEEcCcchhHHHHHHHHH------------hcCeEEeeeCCCC-C-----------cCHHHHHHHHHHHHHCCCCcE
Confidence 335555555555422222111 1234444432211 1 3788888888641 22344
Q ss_pred EEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCC-Cccee--eeccccCCCcccc
Q psy8199 424 AIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEI-WPDFL--CLSKGITGGYLPL 500 (965)
Q Consensus 424 aii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~-~pDiv--t~sK~l~gG~~pi 500 (965)
+|++.- +++++|.+.+ +++|.++|++||+++|+|++|.++............++ ..|.+ +++|.++++ .++
T Consensus 151 ~v~~~~-~~~~tG~~~~----~~~i~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~l~~p-~g~ 224 (345)
T cd06450 151 MVVATA-GTTDTGAIDP----LEEIADLAEKYDLWLHVDAAYGGFLLPFPEPRHLDFGIERVDSISVDPHKYGLVP-LGC 224 (345)
T ss_pred EEEEec-ccCCCCCCCC----HHHHHHHHHHhCCeEEEechhhHHHhhChhhHHHhcCccccCEEEEchhHhhCCC-cch
Confidence 444443 4778898766 89999999999999999999975421111000001111 35755 467977665 466
Q ss_pred eeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcccCCCceeee-ec
Q psy8199 501 SLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINF-RQ 579 (965)
Q Consensus 501 g~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v-~g 579 (965)
|+++.+ .+++.+++..+....-++..++..++.+++.+.|+++ +++..+ .+
T Consensus 225 g~~~~~-------------------------~~~~~~~l~~l~~~g~~~~~~~~~~~~~~l~~~L~~~---~~~~~~~~~ 276 (345)
T cd06450 225 SAVLVR-------------------------ALKLWATLRRFGRDGYGEHIDRIVDLAKYLAELIRAD---PGFELLGEP 276 (345)
T ss_pred HHHHHH-------------------------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC---CCeEEecCC
Confidence 655444 2333333333322111345667777788888877665 344322 24
Q ss_pred eeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec-----CCEEEEeCCccc-CHHHHHHHHHhhhc
Q psy8199 580 KGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-----GNTVYLMPPYIL-NKNEIQHMTSAIFQ 643 (965)
Q Consensus 580 ~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-----~~~lR~~p~~~~-t~~~i~~~~~~l~~ 643 (965)
.+.++.+.+. .+. ........+.+.|.++|+++.+. +.++|+++...+ +.++++++++.+.+
T Consensus 277 ~~~iv~f~~~-~~~-~~~~~~~~i~~~L~~~g~~~~~~~~~~~~~~lRis~~~~~~t~~di~~l~~~l~~ 344 (345)
T cd06450 277 NLSLVCFRLK-PSV-KLDELNYDLSDRLNERGGWHVPATTLGGPNVLRFVVTNPLTTRDDADALLEDIER 344 (345)
T ss_pred ceeEEEEEEC-Ccc-hhhHHHHHHHHHHHhcCCEEEEeeEECCeEEEEEEecCCCCCHHHHHHHHHHHHh
Confidence 5667777664 110 00112346888899997554431 358999988765 99999999988754
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine. |
| >TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.3e-14 Score=153.55 Aligned_cols=200 Identities=19% Similarity=0.267 Sum_probs=150.8
Q ss_pred CCeEEEeEeEeeccCCCCCCCCCCCCCCcCCCCcccccCCCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHH
Q psy8199 676 ANEIELAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENM 755 (965)
Q Consensus 676 g~~~~~~~~i~~~s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~ 755 (965)
|..+.. ..+++ |+.|+.+|.||....... ...+.++.|++.+.++.+.+.|++.|.|+||+ |+...+ +.++
T Consensus 6 gr~~~~-l~i~v-T~~CNl~C~yC~~~~~~~---~~~~~ls~eei~~~i~~~~~~gi~~I~~tGGE-Pll~~~---l~~i 76 (302)
T TIGR02668 6 GRPVTS-LRISV-TDRCNLSCFYCHMEGEDR---SGGNELSPEEIERIVRVASEFGVRKVKITGGE-PLLRKD---LIEI 76 (302)
T ss_pred CCccCe-EEEEE-cccccCCCCCCCccccCC---CccCcCCHHHHHHHHHHHHHcCCCEEEEECcc-cccccC---HHHH
Confidence 555432 35667 999999999997653211 12345899999999988888999999998765 666544 4556
Q ss_pred HHHHHhcCc-EeEE-ecCCCCHHHHHHHHHhCCCeEeccCCC-CHHHHhcccCCCCHHHHHHHHHHHHHcCCc-eeeeEE
Q psy8199 756 ICEVKKIGL-ETCL-TLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGIN-ICCGGI 831 (965)
Q Consensus 756 ~~~i~~~~~-~i~~-~~~~~~~e~l~~Lk~aG~~~i~i~~es-~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~-v~~~~i 831 (965)
++.+++.++ .+++ ++|.+..+.++.|+++|++.+++++++ +++.++.+.+..++++.+++++.++++|+. +...++
T Consensus 77 v~~l~~~g~~~v~i~TNG~ll~~~~~~l~~~g~~~v~iSld~~~~~~~~~i~~~~~~~~vl~~i~~~~~~G~~~v~i~~v 156 (302)
T TIGR02668 77 IRRIKDYGIKDVSMTTNGILLEKLAKKLKEAGLDRVNVSLDTLDPEKYKKITGRGALDRVIEGIESAVDAGLTPVKLNMV 156 (302)
T ss_pred HHHHHhCCCceEEEEcCchHHHHHHHHHHHCCCCEEEEEecCCCHHHhhhccCCCcHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 666666555 4433 456666889999999999999999999 899999999988999999999999999996 877777
Q ss_pred EecCCCHHHHHHHHHHHHhcCCCCCceeeccccccCCC-CCCCCCCCCHHHHHHHHH
Q psy8199 832 IGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGT-PLYGSSILDPLEFIRTIA 887 (965)
Q Consensus 832 ~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT-~l~~~~~~~~~~~~~~ia 887 (965)
+-.|++.+++.+.++++++++ . .+.+..++|.... ........+..++...+.
T Consensus 157 ~~~g~n~~ei~~~~~~~~~~g--~-~~~~ie~~p~~~~~~~~~~~~~~~~~i~~~l~ 210 (302)
T TIGR02668 157 VLKGINDNEIPDMVEFAAEGG--A-ILQLIELMPPGEGEKEFKKYHEDIDPIEEELE 210 (302)
T ss_pred EeCCCCHHHHHHHHHHHHhcC--C-EEEEEEEeECCCCccchhhceecHHHHHHHHH
Confidence 655799999999999999998 4 4677777886532 222223345566555543
|
This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666). |
| >PRK14012 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.5e-13 Score=155.11 Aligned_cols=332 Identities=12% Similarity=0.115 Sum_probs=192.1
Q ss_pred cccccccccchhccCCCCCHHHHHHHHHHHh--h-cccccc----CCC-CcHHHHHHHHHHHhhcCCCCCeEEEcCChhH
Q psy8199 254 KRYLDAISSWWVNLFGHSNSYINKALKNQLN--K-LEHVML----SNL-THKPVIKLSEKLSSLTQYKLGHCFYGSDGAS 325 (965)
Q Consensus 254 ~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~--~-~~~~~~----~~~-~~~~~~~la~~l~~~~~~~~~~v~~~~sGse 325 (965)
+.|+|..+. +..++.+.+++.+.+. . ....+. ..+ ..+...++.+.++++++.+.+.++|++|||+
T Consensus 4 ~iyld~a~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~g~~~~~v~~~~g~t~ 77 (404)
T PRK14012 4 PIYLDYSAT------TPVDPRVAEKMMPYLTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLIGADPREIVFTSGATE 77 (404)
T ss_pred eEEecCcCC------CCCCHHHHHHHHHHHHhcccCcCCCchhhHHHHHHHHHHHHHHHHHHHHcCcCcCeEEEeCCHHH
Confidence 468897664 3368999999988775 2 111100 000 1234567788899999866778999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHH
Q psy8199 326 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIAR 405 (965)
Q Consensus 326 A~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (965)
|+..+++.+..... .+++.|++.+..|+.. ..+.... ......+.+++.+.. +.
T Consensus 78 al~~~l~~l~~~~~----~~gd~Vi~~~~~~~s~-~~~~~~~---------~~~g~~~~~v~~~~~-g~----------- 131 (404)
T PRK14012 78 SDNLAIKGAAHFYQ----KKGKHIITSKTEHKAV-LDTCRQL---------EREGFEVTYLDPQSN-GI----------- 131 (404)
T ss_pred HHHHHHHHHHHhhc----CCCCEEEEecCccHHH-HHHHHHH---------HhCCCEEEEEccCCC-Cc-----------
Confidence 99999987643210 2456777776665443 1111100 000112344443321 11
Q ss_pred HHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcc
Q psy8199 406 CAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPD 485 (965)
Q Consensus 406 ~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pD 485 (965)
.|+++|++++. .++.+|++.. +++++|.+.+ +++|.++|+++|+++|+|++|+ +|.. ........+|
T Consensus 132 ~d~~~l~~~i~---~~t~lv~~~~-~~n~tG~~~~----~~~I~~la~~~g~~vivD~a~~-~g~~----~~~~~~~~~D 198 (404)
T PRK14012 132 IDLEKLEAAMR---DDTILVSIMH-VNNEIGVIQD----IAAIGEICRERGIIFHVDAAQS-VGKV----PIDLSKLKVD 198 (404)
T ss_pred CCHHHHHHhcC---CCCEEEEEEC-cCCCccchhh----HHHHHHHHHHcCCEEEEEcchh-cCCc----ccCcccCCCC
Confidence 26788888885 3456777777 7899998887 8999999999999999999996 4432 1112234589
Q ss_pred eeeec--cccCCCcccceeeeecHHHHHhhhc---cCC-cccccccCCCCCCHHHHHHHHHHHHHHhc--ccHHHHHHHH
Q psy8199 486 FLCLS--KGITGGYLPLSLVMTTDKIYNSIYY---KNN-INIFLHSHSYSGNPLACCAALATLEIFNK--DNILQRISQD 557 (965)
Q Consensus 486 ivt~s--K~l~gG~~pig~v~~~~~i~~~~~~---~~~-~~~~~~~~t~~~~~~~~aaa~a~L~~~~~--~~~~~~~~~~ 557 (965)
++++| |.++. .++|+++++++....+.. ++. ...+ ..+| .+.....+..++++.+.. +...++.+++
T Consensus 199 ~~~~s~~K~~gp--~g~G~l~~~~~~~~~~~~~~~g~~~~~~~-~~gt--~~~~~~~~l~~al~~~~~~~~~~~~~~~~l 273 (404)
T PRK14012 199 LMSFSAHKIYGP--KGIGALYVRRKPRVRLEAQMHGGGHERGM-RSGT--LPTHQIVGMGEAARIAKEEMATENERIRAL 273 (404)
T ss_pred EEEEehhhccCC--CceEEEEEecCCCCCCCceecCCCccCCc-cCCC--cCHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 99887 95543 357888887654322211 000 0001 1122 233333344455554432 3355667777
Q ss_pred HHHHHHHHHcccCCCceeee-----eceeE-EEEEEEeecCccchhhHHHHHHHHHHHcCcEE----ee-----------
Q psy8199 558 MKKITKALTSLITHPKIINF-----RQKGM-IWAFDVIIEDPEQIETFSKKFFVAALKNELLL----RP----------- 616 (965)
Q Consensus 558 ~~~l~~~L~~l~~~~~i~~v-----~g~G~-~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~----~~----------- 616 (965)
.+++.+.|+++ +++... +..+. .+.+... + ...+...+.+.+|-. .+
T Consensus 274 ~~~l~~~L~~~---~~i~~~~~~~~~~~~~~~~~~~~~--~-------~~~~~~~l~~~~i~~g~~~~~~~~~~~~~~~~ 341 (404)
T PRK14012 274 RDRLWNGIKDI---EEVYLNGDLEQRVPGNLNVSFNYV--E-------GESLIMALKDLAVSSGSACTSASLEPSYVLRA 341 (404)
T ss_pred HHHHHHHHhcC---CCEEEeCCccccCCCEEEEEEeCc--C-------HHHHHHhCCCeEEEchhhhCCCCCCCCHHHHH
Confidence 77777777654 333211 11111 2232221 1 112333332222111 11
Q ss_pred -------cCCEEEEeCCcccCHHHHHHHHHhhhccccc
Q psy8199 617 -------IGNTVYLMPPYILNKNEIQHMTSAIFQTFNE 647 (965)
Q Consensus 617 -------~~~~lR~~p~~~~t~~~i~~~~~~l~~~~~~ 647 (965)
..+.+|++++...++++++.+++.+.+....
T Consensus 342 ~~~~~~~~~~~iRls~~~~~t~~dvd~~~~~l~~~~~~ 379 (404)
T PRK14012 342 LGLNDELAHSSIRFSLGRFTTEEEIDYAIELVRKSIGK 379 (404)
T ss_pred cCCChhhcCceEEEEecCCCCHHHHHHHHHHHHHHHHH
Confidence 1268999999999999999999998875443
|
|
| >cd00617 Tnase_like Tryptophanase family (Tnase) | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.9e-13 Score=152.25 Aligned_cols=350 Identities=14% Similarity=0.138 Sum_probs=194.6
Q ss_pred cCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHH
Q psy8199 251 FSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVA 330 (965)
Q Consensus 251 ~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~A 330 (965)
..|..|||+.+-.+. ..+.+++.+++..... ....++...+|.+.+++.+ +.+++++++||++|+..+
T Consensus 17 ~~~~v~iDlltds~t-------~ams~~~~~a~~~gd~---~Y~~~~g~~~Leeaia~~~--g~~~vv~t~~Gt~Al~la 84 (431)
T cd00617 17 RSEDVYIDLLTDSGT-------GAMSDYQWAAMMLGDE---AYAGSKSFYDLEDAVQDLF--GFKHIIPTHQGRGAENIL 84 (431)
T ss_pred CCCCcCCCCCCCCCc-------HHHHHHHHHHHHhCCC---ccCCCCCHHHHHHHHHHHH--CCCeEEEcCCHHHHHHHH
Confidence 345678999876542 4455555555544321 1233455678889999998 467999999999999999
Q ss_pred HHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHH-HHHHH
Q psy8199 331 LKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIA-RCAIF 409 (965)
Q Consensus 331 l~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~ 409 (965)
+.+... +++.| ...+.|..+.......++.+ ++++....... .....+. ..|++
T Consensus 85 ~~al~~--------pGD~V-~~~~~f~~~~~~i~~~Ga~p-------------v~v~i~~~~~~---~~~~pf~gniD~e 139 (431)
T cd00617 85 FSILLK--------PGRTV-PSNMHFDTTRGHIEANGAVP-------------VDLVIDEAHDA---QELIPFKGNIDVA 139 (431)
T ss_pred HHHhCC--------CCCEE-ccCCcccchHHHHHhCCCEe-------------EEEeccccccc---ccccCCCCCcCHH
Confidence 886632 34544 56666655533333333321 22222110000 0000010 13789
Q ss_pred HHHHHHHhC-CCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCC----------Cccccccc--
Q psy8199 410 DLEILLKKN-HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGC----------GRTGKFFA-- 476 (965)
Q Consensus 410 ~le~~l~~~-~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~----------gr~G~~~~-- 476 (965)
+|+++|.+. ..++++|+++. .+|++|..+.+.+.+++|+++|++||++||.|+++.-. |..+....
T Consensus 140 ~Le~~I~~~~~~~~~~I~v~~-p~N~~gG~~~s~~~l~~i~eia~~~gi~li~DaAr~~~na~~i~~r~~g~~~~si~ei 218 (431)
T cd00617 140 KLEKLIDEVGAENIPYIVLTI-TNNTAGGQPVSMANLREVRELAHKYGIPVVLDAARFAENAYFIKEREEGYRDKSIAEI 218 (431)
T ss_pred HHHHHhCcccCCCccEEEEEC-CcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhHhhhhhhhcccccccCCCHHHH
Confidence 999999754 23477777775 57776555668899999999999999999999996411 11111100
Q ss_pred -ccccCCCcceeeec--cccCCCcccce-eeeecH-HHHHhhhccCCcccccccCCCCCCHHHHHHHHH-HHHHHhcccH
Q psy8199 477 -CEHAEIWPDFLCLS--KGITGGYLPLS-LVMTTD-KIYNSIYYKNNINIFLHSHSYSGNPLACCAALA-TLEIFNKDNI 550 (965)
Q Consensus 477 -~~~~~~~pDivt~s--K~l~gG~~pig-~v~~~~-~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a-~L~~~~~~~~ 550 (965)
.+.+. --|..++| |..+ .++| ++++++ ++++.+.... ..+....|++|....+.+|++ +|+...+.+.
T Consensus 219 ~~e~~s-~sd~~~mS~~K~~~---~~~GG~i~~~d~~l~~~~~~~~--~~~~~~~~~gG~~~r~~~A~A~gL~e~~~~~~ 292 (431)
T cd00617 219 AREMFS-YADGCTMSAKKDGL---VNIGGFLALRDDELYEEARQRV--VLYEGFVTYGGMAGRDMEALAQGLREAVEEDY 292 (431)
T ss_pred HHHhhc-cCCEEEEEeecCCC---CccceEEEeCcHHHHHHHHHhc--cccCCccccccccHHHHHHHHHHHHhcccHHH
Confidence 00011 13444444 3222 2445 677775 5887765311 001111234443333333333 6654222334
Q ss_pred HHHHHHHHHHHHHHHHcccCCCceeeeeceeEEEEEEEeecC-cc-chhh-HHHHHH-HHHHHcCcEEee----------
Q psy8199 551 LQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIED-PE-QIET-FSKKFF-VAALKNELLLRP---------- 616 (965)
Q Consensus 551 ~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~G~~~~i~~~~~~-~~-~~~~-~~~~~~-~~l~~~Gi~~~~---------- 616 (965)
++...+..++|.+.|++. ++..+.+.|.++.+.....- +. +... -+..++ +.+.+.||.+..
T Consensus 293 l~~~~~~r~~l~~~L~~~----G~~v~~P~Ggh~v~~d~~~~~~~~~~~~~~~~~la~~L~~e~gV~~~~~g~~~~~~~~ 368 (431)
T cd00617 293 LRHRVEQVRYLGDRLDEA----GVPIVEPAGGHAVFIDAREFLPHIPQEQFPAQALAAELYLEAGVRAVELGIFSAGRDP 368 (431)
T ss_pred HHHHHHHHHHHHHHHHHC----CCCccCCCcceEEEEEhHHhcCCCCcccCcHHHHHHHHHHHcCeeEEeecceecccCC
Confidence 444444557788888765 55556666665444332110 00 0000 133454 445577887531
Q ss_pred -c-------CCEEEEeCCc-ccCHHHHHHHHHhhhcccccH
Q psy8199 617 -I-------GNTVYLMPPY-ILNKNEIQHMTSAIFQTFNEL 648 (965)
Q Consensus 617 -~-------~~~lR~~p~~-~~t~~~i~~~~~~l~~~~~~~ 648 (965)
. -+.+|+..|. ..|.++++.+.+.+.......
T Consensus 369 ~~~~~~~~~~~~~rl~~prr~~t~~~~~~~~~~~~~~~~~~ 409 (431)
T cd00617 369 NTGENKYPELELVRLAIPRRVYTQDHMDYVAAAVIALYERR 409 (431)
T ss_pred CCCcccCCccceeEEeccccccCHHHHHHHHHHHHHHHhhH
Confidence 1 1579999887 789999998888877655443
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia. |
| >PRK00955 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=7.2e-14 Score=159.42 Aligned_cols=185 Identities=14% Similarity=0.149 Sum_probs=136.3
Q ss_pred EeEeEeeccCCCCCCCCCCCCCCcCCCCcccccCCCHHHHHHHHHHHHHC-CCCEEEE-eeccC-CC-------------
Q psy8199 681 LAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSD-GATRFCM-GAAWR-EL------------- 744 (965)
Q Consensus 681 ~~~~i~~~s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~-g~~~i~l-~~g~~-~~------------- 744 (965)
+...|.+ ++||+++|+||+.+.+.++ .++.+++++|+++++.+.+. |++++.. ++|-+ ..
T Consensus 292 i~~sI~i-~RGC~g~CSFCaIp~~rGr---~~rSRs~esIv~Evk~L~~~~gfkg~I~DlgGptan~Yg~~c~~~~~~~~ 367 (620)
T PRK00955 292 VKFSITS-HRGCFGGCSFCAITFHQGR---FIQSRSQESILREAKELTEMPDFKGYIHDVGGPTANFRKMACKKQLKCGA 367 (620)
T ss_pred EEEEEEe-eCCCCCCCCCCCeecccCC---cceecCHHHHHHHHHHHHhccCCeEEEEeCCCCCcccccccccccccccc
Confidence 3456666 9999999999988765343 24568999999999999887 7888742 22210 00
Q ss_pred --------------CcccHHHHHHHHHHHHh-cCc-EeEEecC----C----CCHHHHHHHHHhCCC-eEeccCCC-CHH
Q psy8199 745 --------------KDRDLDNIENMICEVKK-IGL-ETCLTLG----M----LNENQAYRLKKVGLD-YYNHNLDT-SPK 798 (965)
Q Consensus 745 --------------~~~~~~~~~~~~~~i~~-~~~-~i~~~~~----~----~~~e~l~~Lk~aG~~-~i~i~~es-~~~ 798 (965)
...+...+.++++++++ .++ .+.++.| . .+++.++.|.+..+. .+.+++|+ +++
T Consensus 368 c~~~~clfp~~c~nl~~d~~~l~~LLr~l~~l~gvkrv~isSGIR~D~l~~~~~~~~l~eL~~~~vsg~L~IapESgSd~ 447 (620)
T PRK00955 368 CKNKQCLFPKPCKNLDVDHKEYLELLRKVRKLPGVKKVFIRSGIRYDYLLHDKNDEFFEELCEHHVSGQLKVAPEHISDR 447 (620)
T ss_pred ccccccccCccccccCcChHHHHHHHHHHhccCCceEEEeecceeccccccCCcHHHHHHHHHHhcCCCceeCcCCCChH
Confidence 01134578889988887 354 3444333 2 234578888886554 79999999 999
Q ss_pred HHhcccCCCCHHH---HHHH-HHHHHHcCCc--eeeeEEEec-CCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCC
Q psy8199 799 LYGDIISTRDYEN---RLNT-LKNVRNVGIN--ICCGGIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPL 871 (965)
Q Consensus 799 ~~~~i~~~~~~~~---~~~~-i~~~~~~Gi~--v~~~~i~Gl-~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l 871 (965)
+++.|++. +.+. .++. .+.++++|+. +.+.+|+|+ |||.+|+.++++++++++ .+.+.++.|+|.|||+-
T Consensus 448 VLk~M~K~-~~~~~~~f~~~~~~i~~~~G~~~~I~~yfIvGfPGETeEDf~et~eflkel~--~~~~qV~~fTP~PGT~A 524 (620)
T PRK00955 448 VLKLMGKP-SREVYDKFVKKFDRINKKLGKKQYLVPYLMSSHPGSTLEDAIELAEYTKDLG--YQPEQVQDFYPTPGTLS 524 (620)
T ss_pred HHHHhCCC-CHHHHHHHHHHHHHhhhhcCCCccEEEEEEEECCCCCHHHHHHHHHHHHHcC--CCcceeeeeecCCCcch
Confidence 99999986 3333 3332 3456678876 889999999 799999999999999999 89999999999999865
Q ss_pred C
Q psy8199 872 Y 872 (965)
Q Consensus 872 ~ 872 (965)
.
T Consensus 525 t 525 (620)
T PRK00955 525 T 525 (620)
T ss_pred h
Confidence 4
|
|
| >PRK01254 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.9e-14 Score=158.08 Aligned_cols=185 Identities=15% Similarity=0.229 Sum_probs=144.1
Q ss_pred EeEeeccCCCCCCCCCCCCCCcCCCCcccccCCCHHHHHHHHHHHHHC--CCCEEE--EeeccCCC--------------
Q psy8199 683 VLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSD--GATRFC--MGAAWREL-------------- 744 (965)
Q Consensus 683 ~~i~~~s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~--g~~~i~--l~~g~~~~-------------- 744 (965)
..|.+ ++||+.+|+||+.+.+.++ .++.+|+++|+++++.+.+. |++++. +.|.....
T Consensus 374 ~sV~i-~RGC~g~CSFCaI~~hqGr---~irSRS~esIL~Ea~~L~~~~pGfKgii~DLgGptaN~YG~~c~d~~~~~~C 449 (707)
T PRK01254 374 FSVNI-MRGCFGGCSFCSITEHEGR---IIQSRSEESIINEIEAIRDKVPGFTGVISDLGGPTANMYRLRCKSPRAEQTC 449 (707)
T ss_pred EEEEE-ccCCCCCCCccccccccCC---eeeeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCcccccccccccccccccc
Confidence 45566 9999999999998865443 24568999999999999863 999988 44322111
Q ss_pred -------------CcccHHHHHHHHHHHHh-cCc-EeEEecC------CCCHHHHHHHHHhCCC-eEeccCCC-CHHHHh
Q psy8199 745 -------------KDRDLDNIENMICEVKK-IGL-ETCLTLG------MLNENQAYRLKKVGLD-YYNHNLDT-SPKLYG 801 (965)
Q Consensus 745 -------------~~~~~~~~~~~~~~i~~-~~~-~i~~~~~------~~~~e~l~~Lk~aG~~-~i~i~~es-~~~~~~ 801 (965)
...+...+.++++++++ .|+ .+.+..+ ..+++.++.|.+..+. ++.+.+|+ ++++++
T Consensus 450 ~~~~Cl~P~~C~nL~~dh~~l~eLLrkLr~IpGVKkVrI~SgiR~Dl~l~d~elIeel~~~hV~g~LkVppEH~Sd~VLk 529 (707)
T PRK01254 450 RRLSCVYPDICPHLDTDHEPTINLYRRARDLKGIKKILIASGVRYDLAVEDPRYVKELVTHHVGGYLKIAPEHTEEGPLS 529 (707)
T ss_pred ccccccCcccccccCCCHHHHHHHHHHHHhCCCceEEEEEcCCCccccccCHHHHHHHHHhCCccccccccccCCHHHHH
Confidence 11234578999999987 354 3333222 2268899999988876 88999999 999999
Q ss_pred cccCC--CCHHHHHHHHHHHHH-cC--CceeeeEEEec-CCCHHHHHHHHHHHHhcCCCCCceeeccccccC---CCCCC
Q psy8199 802 DIIST--RDYENRLNTLKNVRN-VG--INICCGGIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIK---GTPLY 872 (965)
Q Consensus 802 ~i~~~--~~~~~~~~~i~~~~~-~G--i~v~~~~i~Gl-~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~---gT~l~ 872 (965)
.|+++ .+++++.+.++.+++ .| +.+.+.||+|+ |||.+|+.++++++++++ ...-.++.|+|.| +|.|+
T Consensus 530 ~M~Kp~~~~~e~F~e~f~rirk~~gk~q~LipyfIvGhPGeTeeDf~eLaefLkel~--f~~eQVQ~FTPtP~t~~T~MY 607 (707)
T PRK01254 530 KMMKPGMGSYDRFKELFDKYSKEAGKEQYLIPYFISAHPGTTDEDMVNLALWLKKNR--FRLDQVQNFYPSPMANATTMY 607 (707)
T ss_pred HhCCCCcccHHHHHHHHHHHHHHCCCCeEEEEeEEEECCCCCHHHHHHHHHHHHHhC--CCcceeeeeecCCCcCchHHH
Confidence 99987 688999999999876 45 45667999998 899999999999999999 7888888999999 78777
Q ss_pred C
Q psy8199 873 G 873 (965)
Q Consensus 873 ~ 873 (965)
.
T Consensus 608 y 608 (707)
T PRK01254 608 Y 608 (707)
T ss_pred h
Confidence 4
|
|
| >COG1032 Fe-S oxidoreductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2e-14 Score=169.55 Aligned_cols=196 Identities=20% Similarity=0.291 Sum_probs=145.1
Q ss_pred eEeEeeccCCCCCCCCCCCCCCcCCCCcccccCCCHHHHHHHHHHHHHCCCCEEEEeeccC-CCCcc--cHHHHHHHHH-
Q psy8199 682 AVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWR-ELKDR--DLDNIENMIC- 757 (965)
Q Consensus 682 ~~~i~~~s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~l~~g~~-~~~~~--~~~~~~~~~~- 757 (965)
...+++ ++|||++|.||+.+..+ .++.++++.++++++...+.|.+.+.+..+.. ..... ..+...+.+.
T Consensus 199 ~~~ve~-~RGCp~~C~FC~~~~~~-----~~r~~~~~~v~~ei~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~ 272 (490)
T COG1032 199 AFSVET-SRGCPRGCRFCSITKHF-----KYRRRRPERVVEEIKELIEEGGKRVVFFVDDIFLYGSPALNDEKRFELLSL 272 (490)
T ss_pred EEEEEe-ccCCCCCCCCCCCcccc-----cccCCCHHHHHHHHHHHHHHhhhcCcccccceeecCCccccchhhcccchH
Confidence 466777 99999999999977643 24557899999999888887766644222111 10010 1122222222
Q ss_pred HHHhcC------cEeE---EecCCCC-HHHHHHHHHhCCCeEeccCCC-CHHHHhcccCCCCHHHHHH-HHHHHHHcCCc
Q psy8199 758 EVKKIG------LETC---LTLGMLN-ENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLN-TLKNVRNVGIN 825 (965)
Q Consensus 758 ~i~~~~------~~i~---~~~~~~~-~e~l~~Lk~aG~~~i~i~~es-~~~~~~~i~~~~~~~~~~~-~i~~~~~~Gi~ 825 (965)
.+.+.. ..+. .....++ ++.++.++++|..++.+|+|| +++.++.+.++++.++.++ +++.+++.|+.
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~r~d~~~~~~~~~~~~~~g~~~~~iG~Esgs~~~l~~~~k~~~~~~~~~~a~~~~~~~~~~ 352 (490)
T COG1032 273 ELIERGLRKGCRVHISAPSLRADTVTDEELLKLLREAGLRRVYIGIESGSEELLKKINKGITTEEVLEEAVKIAKEHGLR 352 (490)
T ss_pred HHHHHhcccCceeeeeccccCchhcCHHHHHHHHhhCCCcceEEeccCCCHHHHHHHhCCCChHHHHHHHHHHHHhCCce
Confidence 222211 1222 3456676 999999999999999999999 9999999999999999995 99999999999
Q ss_pred eeeeEEEec-CCCHHHHHHH---HHHHHhcCCCCC-ceeeccccccCCCCCCCCCCCCHHHHHHH
Q psy8199 826 ICCGGIIGL-SESRDQRAEL---IFQLANLNPYPE-SVPINNLVQIKGTPLYGSSILDPLEFIRT 885 (965)
Q Consensus 826 v~~~~i~Gl-~et~ed~~~~---l~~l~~l~~~~~-~i~~~~~~P~~gT~l~~~~~~~~~~~~~~ 885 (965)
+..++|+|+ |||.+|..++ ++.+.+++ .. .+.++.|+|.|+|+++...........+.
T Consensus 353 ~~~~~i~G~pget~ed~~~t~~~~~~~~~~~--~~~~~~~~~~~p~p~t~~~~~~~~~~~~~~~~ 415 (490)
T COG1032 353 VKLYFIVGLPGETEEDVKETIELAKFIKKLG--PKLYVSPSPFVPLPGTPLQEMPKLENELLKRR 415 (490)
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHHHHHHhC--ccceEEEeeeeCCCCCchhhcccccchhhhhh
Confidence 999999999 6999999998 67777777 54 79999999999999998765444433333
|
|
| >PLN02242 methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.1e-13 Score=156.58 Aligned_cols=257 Identities=12% Similarity=0.095 Sum_probs=163.5
Q ss_pred cCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCc
Q psy8199 291 LSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQ 370 (965)
Q Consensus 291 ~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~ 370 (965)
++.+.++...+|+++++++. +.+.+++++||++|+..++....+ ++++|++.++.|.++.........
T Consensus 70 Y~r~~~Pt~~~LE~~lA~l~--g~~~~l~~~sG~~Ai~~al~al~~--------~GD~Vl~~~~~Y~~~~~~~~~~~~-- 137 (418)
T PLN02242 70 YSRHFNPTVLNLGRQMAALE--GTEAAYCTASGMSAISSVLLQLCS--------SGGHVVASNTLYGGTHALLAHFLP-- 137 (418)
T ss_pred ccCCCChhHHHHHHHHHHHh--CCCeEEEEccHHHHHHHHHHHHhC--------CCCEEEEcCCcHHHHHHHHHHhhh--
Confidence 34567889999999999998 467888999999999999987643 568899888887554211000000
Q ss_pred CccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHH
Q psy8199 371 SFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVRE 450 (965)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~ 450 (965)
........+++. .|++++++++++ .++.+|++|. ++|++|.+.+ +++|.+
T Consensus 138 ------~~~G~~~~~~d~-----------------~d~e~l~~~i~~--~~tklV~les-p~NPtG~v~d----l~~I~~ 187 (418)
T PLN02242 138 ------RKCNITTTFVDI-----------------TDLEAVKKAVVP--GKTKVLYFES-ISNPTLTVAD----IPELAR 187 (418)
T ss_pred ------hccCceEEEcCC-----------------CCHHHHHHhcCc--CCCEEEEEec-CCCCCCcccC----HHHHHH
Confidence 000111222221 267888888752 2467888888 8999998876 999999
Q ss_pred HHHhcCCeEEEeccccCCCcccccccccccCCCccee--eeccccCCCcccc-eeeeecHHHHHhhhccCCccccccc--
Q psy8199 451 ICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL--CLSKGITGGYLPL-SLVMTTDKIYNSIYYKNNINIFLHS-- 525 (965)
Q Consensus 451 l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDiv--t~sK~l~gG~~pi-g~v~~~~~i~~~~~~~~~~~~~~~~-- 525 (965)
+|++||+++|+||+|+.+. .. ...+| .|++ +|||.++|+.+++ |++++++++++.+.. +..+
T Consensus 188 la~~~gi~livDea~~~~~-~~----~~~~g--~divv~S~SK~l~g~g~~~gG~iv~~~~li~~l~~------~~~~~~ 254 (418)
T PLN02242 188 IAHEKGVTVVVDNTFAPMV-LS----PARLG--ADVVVHSISKFISGGADIIAGAVCGPAELVNSMMD------LHHGAL 254 (418)
T ss_pred HHHHhCCEEEEECCCCccC-CC----HHHcC--CcEEEEeCccccCCCCCceEEEEEcCHHHHHHHHH------Hhhhhh
Confidence 9999999999999996442 21 11223 5666 6899998755674 888889988887764 1111
Q ss_pred CCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHccc---CCCceee----------e---eceeEEEEEEEe
Q psy8199 526 HSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLI---THPKIIN----------F---RQKGMIWAFDVI 589 (965)
Q Consensus 526 ~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~---~~~~i~~----------v---~g~G~~~~i~~~ 589 (965)
..++..+..+.|++..+..-.-+...++.+++.+++.+.|++.. .+|++.. . .|.|.|++|++.
T Consensus 255 ~~~g~~~~~~~A~l~~~~l~tl~~r~~~~~~~a~~la~~L~~~~~~V~yP~l~~~p~~~~~~~~~~~~~g~g~~~sf~l~ 334 (418)
T PLN02242 255 MLLGPTMNPKVAFELSERLPHLSLRMKEHCRRAMEYAKRMKELGLKVIYPGLEDHPQHALLKSMANKGYGFGGLLCLDMD 334 (418)
T ss_pred hccCCCCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHhCCCEEECCCCCCCccHHHHHHhcccCCCceeEEEEEEC
Confidence 12223333444444443211112245677788888888887651 2333211 1 367889999985
Q ss_pred ecCccchhhHHHHHHHHHH
Q psy8199 590 IEDPEQIETFSKKFFVAAL 608 (965)
Q Consensus 590 ~~~~~~~~~~~~~~~~~l~ 608 (965)
+ ...+.+|.+.+.
T Consensus 335 --~----~~~~~~f~~~l~ 347 (418)
T PLN02242 335 --T----EERANRLMRYLQ 347 (418)
T ss_pred --C----HHHHHHHHHHhh
Confidence 2 223445555554
|
|
| >PF06968 BATS: Biotin and Thiamin Synthesis associated domain; InterPro: IPR010722 Biotin synthase (BioB), 2 | Back alignment and domain information |
|---|
Probab=99.56 E-value=5e-15 Score=128.58 Aligned_cols=93 Identities=39% Similarity=0.644 Sum_probs=73.3
Q ss_pred eeccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeCCccccCCCCCCh
Q psy8199 859 PINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTN 938 (965)
Q Consensus 859 ~~~~~~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~ 938 (965)
|++.|.|.+|||+++.++.++++++|+++++|+++|+..|+++++++....+.+..++.+|||++++|++++|+++++.+
T Consensus 1 pin~l~P~~Gtpl~~~~~l~~~e~lr~ia~~Rl~~P~a~I~la~gr~~~~~~~~~~~~~sg~n~~~~G~ylt~~g~~~~~ 80 (93)
T PF06968_consen 1 PINFLRPIPGTPLEDPPPLSDEEFLRIIAAFRLLLPEAGIRLAGGREALLRDLQPLTFMSGANSIMVGGYLTTSGNRSVD 80 (93)
T ss_dssp EEEE----TTSTTTTS----HHHHHHHHHHHHHHSTTSEEEEECCHHHCSCCHHHHHHCCT--EEE-CSBTSSSCTSHHH
T ss_pred CeeeEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCcceEeecCccccCHHHHHHHHhcccceeEECCccccCCCCCHH
Confidence 45668999999999999999999999999999999999999999998776778889999999999999987666658999
Q ss_pred hhHHHHHHcCCCc
Q psy8199 939 DDSKLLKKLGINT 951 (965)
Q Consensus 939 ~~~~~~~~~g~~~ 951 (965)
++.+||+++|+.|
T Consensus 81 ~d~~~i~~lG~~P 93 (93)
T PF06968_consen 81 EDIEMIEKLGLEP 93 (93)
T ss_dssp HHHHHHHHTT-ES
T ss_pred HHHHHHHHcCCCC
Confidence 9999999999976
|
8.1.6 from EC, catalyses the last step of the biotin biosynthetic pathway. The reaction consists in the introduction of a sulphur atom into dethiobiotin. BioB functions as a homodimer []. Thiamin synthesis if a complex process involving at least six gene products (ThiFSGH, ThiI and ThiJ). Two of the proteins required for the biosynthesis of the thiazole moiety of thiamine (vitamin B(1)) are ThiG and ThiH (this entry) and form a heterodimer[]. Both of these reactions are thought of involve the binding of co-factors, and both function as dimers [, ]. This domain therefore may be involved in co-factor binding or dimerisation.; GO: 0051536 iron-sulfur cluster binding, 0051186 cofactor metabolic process; PDB: 1R30_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A. |
| >KOG1358|consensus | Back alignment and domain information |
|---|
Probab=99.56 E-value=7e-14 Score=144.82 Aligned_cols=335 Identities=19% Similarity=0.174 Sum_probs=220.5
Q ss_pred EecCCcccccccccchhccCCCC-CHHHHHHHHHHHhhccccc--c--CCCCcHHHHHHHHHHHhhcCCCCCeEEEcCCh
Q psy8199 249 ITFSGKRYLDAISSWWVNLFGHS-NSYINKALKNQLNKLEHVM--L--SNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDG 323 (965)
Q Consensus 249 ~d~dG~~ylD~~~~~~~~~lGh~-~p~v~~av~~~~~~~~~~~--~--~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sG 323 (965)
+..||+.++++.|. +.||.. ++++.+.+...+.+++-.+ + +.++-+...++.++|++..+ .+..+.-+-|
T Consensus 89 ~~i~G~~~~N~aS~---NfL~l~~~~~ike~a~~~lrkyGvGsCGPrGFYGt~DvHldlE~~iakF~G--~E~aivYs~g 163 (467)
T KOG1358|consen 89 VTIDGKDVLNFASA---NFLGLIENEEIKEEASFTLRKYGVGSCGPRGFYGTIDVHLDLEKRIAKFMG--TEDAIVYSYG 163 (467)
T ss_pred eEecCceeecccch---hhhhhcccHHHHHHHHHHHHHhCCCCcCCCcccccceeecccHHHHHHhhC--Ccceeeeccc
Confidence 34799999999886 667765 8999999999998864321 1 23566778899999999995 4544444557
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHH
Q psy8199 324 ASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEI 403 (965)
Q Consensus 324 seA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (965)
-.++..++.+. +++..|++.+..-+-...-++.++. ..+.+ |
T Consensus 164 F~ti~S~ipaf---------sKrGDIi~~de~~nfaIq~GlqlSR------------S~i~~-----------------F 205 (467)
T KOG1358|consen 164 FSTIESAIPAF---------SKRGDIIFVDEAVNFAIQKGLQLSR------------STISY-----------------F 205 (467)
T ss_pred cchhhhcchhh---------hccCcEEEEehhhhHHHHHHHhhhh------------heeEE-----------------e
Confidence 88888888876 3567777776544322111111111 11111 1
Q ss_pred HHHHHHHHHHHHHhCC----------CcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccc
Q psy8199 404 ARCAIFDLEILLKKNH----------NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK 473 (965)
Q Consensus 404 ~~~d~~~le~~l~~~~----------~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~ 473 (965)
.+||+++||+.+.+.. .....|++|. +..++|.+.| +.+|.++..||..-+|+||..+ ||-.|+
T Consensus 206 khndm~~lerll~E~~~~~~K~~k~~~~Rrfiv~EG-l~~N~g~i~p----l~~iv~lk~Kyk~RvildEs~S-fG~lg~ 279 (467)
T KOG1358|consen 206 KHNDMEDLERLLPEQEDEDQKNPKKALTRRFIVVEG-LYANTGDICP----LPEIVKLKNKYKFRVILDESLS-FGVLGK 279 (467)
T ss_pred cCCCHHHHHHhccCcchhhhhccccccceEEEEEEe-eccCCCcccc----cHHHHHHHhhheEEEEEecccc-cccccc
Confidence 2268888887774432 1256899999 8999999998 8999999999999999999997 776665
Q ss_pred --cccccccCCC---cceeeecc--ccCCCcccceeeeecHHHHHhhhccCCcccccccCCC--CCCHHHHHHHHHHHHH
Q psy8199 474 --FFACEHAEIW---PDFLCLSK--GITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSY--SGNPLACCAALATLEI 544 (965)
Q Consensus 474 --~~~~~~~~~~---pDivt~sK--~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~--~~~~~~~aaa~a~L~~ 544 (965)
.+..+|+++. .|+++.|- +++.|+ |.++|+.-+++.-+-. ..++-| +-+|....||..++++
T Consensus 280 ~GrGvteH~~v~~~~iDiv~~sm~~alas~G---gFc~G~~~i~~hQrLS------g~~Y~fSAslPp~la~aa~~ai~i 350 (467)
T KOG1358|consen 280 TGRGVTEHFGVPITDIDIVTASMETALASGG---GFCAGKSFIADHQRLS------GSGYCFSASLPPYLAGAAIKAILI 350 (467)
T ss_pred cCccccccCCCCccceeeeeecccccccccC---ceeecceeeEeeeecc------ccceeeeccCchhhhhhHHHHHHH
Confidence 4678899885 46666543 565432 4555654444322211 122223 3467788888899988
Q ss_pred Hhc-ccHHHHHHHHHHHHHHHHHcccCCCcee-eeeceeEEEEEEEeecCccc--hhhHHHHHHHHHHHcCcEEee----
Q psy8199 545 FNK-DNILQRISQDMKKITKALTSLITHPKII-NFRQKGMIWAFDVIIEDPEQ--IETFSKKFFVAALKNELLLRP---- 616 (965)
Q Consensus 545 ~~~-~~~~~~~~~~~~~l~~~L~~l~~~~~i~-~v~g~G~~~~i~~~~~~~~~--~~~~~~~~~~~l~~~Gi~~~~---- 616 (965)
++. ++..+.++.....+...|... .++. .-.....++.+.+...+++. ...+.+++.+.+..+|+++..
T Consensus 351 ~~~~p~~~~~L~~k~~~~H~~l~~~---s~~~v~~~~~SPi~hl~l~~~~~s~e~e~~lL~eivd~~i~~~~ll~~a~~~ 427 (467)
T KOG1358|consen 351 EEWNPEIVQPLRAKVAKFHAALSSN---SGFIVSGSPESPIIHLQLERSYGSREKEEKLLEEIVDKCIAEGVLLTRAKYL 427 (467)
T ss_pred HhhCcchhhhhhccccccchhhhcC---CceEEecCcCCceeeeeecccccchHHHHHHHHHHHHHHHhhcceehhhhhh
Confidence 764 557777887777777777653 1111 11223445555554222221 223455677888877887753
Q ss_pred -------cCCEEEEeCCcccCHHHHHHHHHhhhcc
Q psy8199 617 -------IGNTVYLMPPYILNKNEIQHMTSAIFQT 644 (965)
Q Consensus 617 -------~~~~lR~~p~~~~t~~~i~~~~~~l~~~ 644 (965)
...++|++....+++++++++.+.+++.
T Consensus 428 ~~~e~~~~~pSiri~~~a~~seeel~ra~~~ik~~ 462 (467)
T KOG1358|consen 428 EKLERCPIPPSIRICVSAGMSEEELERAAELIKEV 462 (467)
T ss_pred hhcccCCCCCcEEEEEeCCCCHHHHHHHHHHHHHH
Confidence 1258999999999999999998887654
|
|
| >PRK07049 methionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.9e-13 Score=153.76 Aligned_cols=244 Identities=14% Similarity=0.136 Sum_probs=158.1
Q ss_pred CCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcC
Q psy8199 292 SNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQS 371 (965)
Q Consensus 292 ~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~ 371 (965)
+.+.++....|.+.|+++.+ .+.+++++||++|+..++..... ++++|++.++.|.++.......
T Consensus 78 ~R~~~Pt~~~Le~~lA~leg--~~~~iv~~sG~~Ai~~~l~al~~--------~Gd~Vv~~~p~Y~~~~~~~~~~----- 142 (427)
T PRK07049 78 SRFNHPNSEIVEDRLAVYEG--AESAALFSSGMSAIATTLLAFVR--------PGDVILHSQPLYGGTETLLAKT----- 142 (427)
T ss_pred cCCCCcCHHHHHHHHHHHhC--CCcEEEEccHHHHHHHHHHHHhC--------CCCEEEEcCCCcccHHHHHHHH-----
Confidence 45677888899999999984 56799999999999988876643 5688999999998873321110
Q ss_pred ccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhC--CCcEEEEEEccccccCCCcccCChHHHHHHH
Q psy8199 372 FKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKN--HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVR 449 (965)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~--~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~ 449 (965)
........+.++.. .|++++++++.+. ..++.+|++|. ++|++|.+.+ ++++.
T Consensus 143 ----l~~~Gi~~v~~~~~----------------~d~~~l~~~l~~~~~~~~tklv~les-P~NPtg~v~d----~~~l~ 197 (427)
T PRK07049 143 ----FRNFGVGAVGFADG----------------LSEAAIGAAAEAAAAKGRVSLILIET-PANPTNSLVD----VAAVR 197 (427)
T ss_pred ----HHhcCcEEEEEeCC----------------CCHHHHHHHHHhhccCCCceEEEEEC-CCCCCCcccC----HHHHH
Confidence 00000111222211 1445666666432 23577888888 8999998875 44555
Q ss_pred HHHHh------cCCeEEEeccccCCCcccccccccccCCCccee--eeccccCC-CcccceeeeecHHHHHhhhccCCcc
Q psy8199 450 EICNN------YNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL--CLSKGITG-GYLPLSLVMTTDKIYNSIYYKNNIN 520 (965)
Q Consensus 450 ~l~~~------~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDiv--t~sK~l~g-G~~pig~v~~~~~i~~~~~~~~~~~ 520 (965)
++|++ +++++|+||++.++.... .. ....|++ ++||.++| +.+++|++++++++++.+..
T Consensus 198 ~la~~~~~~~~~~~~vvvDety~~~~~~~---pl---~~g~divv~S~SK~~gG~~glr~G~vv~~~~l~~~l~~----- 266 (427)
T PRK07049 198 RVADAIEARQGHRPIIACDNTLLGPVFQK---PL---EHGADLSVYSLTKYVGGHSDLVAGAVLGRKALIRQVRA----- 266 (427)
T ss_pred HHHHHhhhcccCCCEEEEECCccccccCC---cc---ccCCCEEEEcCceeecCCCCcEEEEEECCHHHHHHHHH-----
Confidence 55554 799999999976442111 11 1234666 68999985 44899999999998887764
Q ss_pred cccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHccc-----CCCce--e----------eeeceeEE
Q psy8199 521 IFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLI-----THPKI--I----------NFRQKGMI 583 (965)
Q Consensus 521 ~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~-----~~~~i--~----------~v~g~G~~ 583 (965)
.........+|..+.+++..|+.+.. ..++..++.+.+.+.|++.. .+|+. . ...|-|.+
T Consensus 267 -~~~~~g~~ls~~~a~l~~r~L~tl~~--R~~~~~~~a~~la~~L~~~p~V~~v~yp~~l~~~~~~~~~~~~~~~g~g~~ 343 (427)
T PRK07049 267 -LRSAIGTQLDPHSCWMLGRSLETLVL--RMERANRNARAVAEFLRDHPKVEKLHYLPFLDPDSAYGAVYKRQCTGAGST 343 (427)
T ss_pred -HHHhcCCCCCHHHHHHHHcCCChHHH--HHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCCCccHHHHHhhCCCCccE
Confidence 11122334678888888887765532 24555777777777776542 13421 1 12356889
Q ss_pred EEEEEe
Q psy8199 584 WAFDVI 589 (965)
Q Consensus 584 ~~i~~~ 589 (965)
+.|++.
T Consensus 344 ~s~~~~ 349 (427)
T PRK07049 344 FSFDIK 349 (427)
T ss_pred EEEEEc
Confidence 999985
|
|
| >PRK06767 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.2e-13 Score=153.71 Aligned_cols=263 Identities=14% Similarity=0.120 Sum_probs=167.0
Q ss_pred cCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCc
Q psy8199 291 LSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQ 370 (965)
Q Consensus 291 ~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~ 370 (965)
...+.++...+|+++++++.+ .+..++++||+.|+..++.... .++++||+.++.|.+. ........
T Consensus 55 y~r~~~pt~~~Le~~lA~l~G--~~~al~~~sG~~Ai~~~l~al~--------~~Gd~Vv~~~~~y~~~-~~~~~~~~-- 121 (386)
T PRK06767 55 YSRLGNPTVKLFEERMAVLEG--GEEALAFGSGMAAISATLIGFL--------KAGDHIICSNGLYGCT-YGFLEVLE-- 121 (386)
T ss_pred ccCCCCcchHHHHHHHHHHhC--CCcEEEECCHHHHHHHHHHHHh--------CCCCEEEEcCCcHHHH-HHHHHHHH--
Confidence 345677788999999999996 4677888999999988876553 2567888887766433 22211110
Q ss_pred CccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHH
Q psy8199 371 SFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVRE 450 (965)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~ 450 (965)
......+.+++. .|++++++++. +++.+|++|. ++|++|.+.+ +++|.+
T Consensus 122 ------~~~gi~~~~~~~-----------------~d~~~l~~~i~---~~tklV~les-p~NptG~v~d----l~~I~~ 170 (386)
T PRK06767 122 ------EKFMITHSFCDM-----------------ETEADIENKIR---PNTKLIFVET-PINPTMKLID----LKQVIR 170 (386)
T ss_pred ------hhcCeEEEEeCC-----------------CCHHHHHHhhC---cCceEEEEeC-CCCCCceecC----HHHHHH
Confidence 000011222221 25677887775 3567888887 7999998887 899999
Q ss_pred HHHhcCCeEEEeccccCCCcccccccccccCCCcceee--eccccCCCcccc-eeeeecHHHHHhhhccCCcccccccCC
Q psy8199 451 ICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLC--LSKGITGGYLPL-SLVMTTDKIYNSIYYKNNINIFLHSHS 527 (965)
Q Consensus 451 l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt--~sK~l~gG~~pi-g~v~~~~~i~~~~~~~~~~~~~~~~~t 527 (965)
+|+++|+++|+||+|. .+..+.. .....|+++ ++|.++|...++ |+++++++.++.+... .. ...++.
T Consensus 171 la~~~g~~vivD~a~a-~~~~~~p-----l~~g~Div~~S~sK~l~g~g~~~gG~v~~~~~~i~~~~~~--~~-~~~g~~ 241 (386)
T PRK06767 171 VAKRNGLLVIVDNTFC-SPYLQRP-----LELGCDAVVHSATKYIGGHGDVVAGVTICKTRALAEKIRP--MR-KDIGGI 241 (386)
T ss_pred HHHHcCCEEEEECCCc-ccccCCc-----hhcCCcEEEecCcceecCCCCceeEEEEeChHHHHHHHHH--HH-HHhCCC
Confidence 9999999999999985 2222211 112347764 579998743675 7888888877654320 00 011222
Q ss_pred CCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcccCCCceeee------------eceeEEEEEEEeecCccc
Q psy8199 528 YSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINF------------RQKGMIWAFDVIIEDPEQ 595 (965)
Q Consensus 528 ~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v------------~g~G~~~~i~~~~~~~~~ 595 (965)
.+|..+++++..|+.+. ...++.+++..++.+.|++. |++..| ++.|.|+.|++. ++
T Consensus 242 --~~~~~a~l~~~~L~tl~--~r~~~~~~~a~~la~~L~~~---p~v~~v~~p~~~~~~~~~~~~gg~vsf~l~-~~--- 310 (386)
T PRK06767 242 --MAPFDAWLLLRGLKTLA--VRMDRHCDNAEKIVSFLKNH---DAVEGVWYPEGELASRQMKRGGGVISFSIK-GG--- 310 (386)
T ss_pred --CCHHHHHHHHcCCCcHH--HHHHHHHHHHHHHHHHHHcC---CCccEEECCCcHHHHHhCCCCCceEEEEEc-CC---
Confidence 35776676666665443 24567778888888888765 444322 356789999885 22
Q ss_pred hhhHHHHHHHHHHHcCcEEeecC
Q psy8199 596 IETFSKKFFVAALKNELLLRPIG 618 (965)
Q Consensus 596 ~~~~~~~~~~~l~~~Gi~~~~~~ 618 (965)
.....+|.+.|...++.+..++
T Consensus 311 -~~~~~~f~~~l~~~~~~~s~G~ 332 (386)
T PRK06767 311 -KEETQAFINDLHFITIAVSLGD 332 (386)
T ss_pred -HHHHHHHHHhCCccEEecCCCC
Confidence 1224467777776666555444
|
|
| >smart00876 BATS Biotin and Thiamin Synthesis associated domain | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.8e-14 Score=125.55 Aligned_cols=93 Identities=51% Similarity=0.818 Sum_probs=84.8
Q ss_pred eeccccccCCCCCCCC-CCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeCCccccCCCCCC
Q psy8199 859 PINNLVQIKGTPLYGS-SILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKT 937 (965)
Q Consensus 859 ~~~~~~P~~gT~l~~~-~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~ 937 (965)
+++.|.|.+|||+++. ++.+.++++|++|++|+++|+..|+++++++.+..+.+..++.+|||+++.|+.++|+.|...
T Consensus 1 pin~l~P~~gTp~~~~~~~~~~~~~l~~ia~~Rl~~P~~~I~~~~gr~~~~~~~~~~~l~aGan~~~~G~~~lt~~g~~~ 80 (94)
T smart00876 1 PINRLRPIEGTPLEDPPPPVSPEEFLRTIAAARLALPDAGIRLSTGREALLRDLQALCFSAGANSIFGGDKYLTTSGPRS 80 (94)
T ss_pred CCCccccCCCCCcccCCCCCCHHHHHHHHHHHHHHCCCcceEEecCCchhcchHHHHhhhccCceeeeCCccccCCCcCc
Confidence 5788999999999987 889999999999999999999999999999888788888899999999999985668888888
Q ss_pred hhhHHHHHHcCCCc
Q psy8199 938 NDDSKLLKKLGINT 951 (965)
Q Consensus 938 ~~~~~~~~~~g~~~ 951 (965)
.++++|++++|+.+
T Consensus 81 ~~d~~~i~~~g~~~ 94 (94)
T smart00876 81 ADDVAMLEKLGLEP 94 (94)
T ss_pred HHHHHHHHHcCCCC
Confidence 99999999999864
|
Biotin synthase (BioB), , catalyses the last step of the biotin biosynthetic pathway. The reaction consists in the introduction of a sulphur atom into dethiobiotin. BioB functions as a homodimer PUBMED:12482614. Thiamin synthesis if a complex process involving at least six gene products (ThiFSGH, ThiI and ThiJ). Two of the proteins required for the biosynthesis of the thiazole moiety of thiamine (vitamin B(1)) are ThiG and ThiH (this entry) and form a heterodimerPUBMED:12650933. Both of these reactions are thought of involve the binding of co-factors, and both function as dimers PUBMED:12482614, PUBMED:12650933. This domain therefore may be involved in co-factor binding or dimerisation. |
| >PRK08133 O-succinylhomoserine sulfhydrylase; Validated | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.9e-13 Score=151.52 Aligned_cols=240 Identities=14% Similarity=0.185 Sum_probs=152.6
Q ss_pred CCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcC
Q psy8199 292 SNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQS 371 (965)
Q Consensus 292 ~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~ 371 (965)
+.+.++...+++++++++.+ .+.+++++||++|+..++.... .++++||+.+..|.+. ....
T Consensus 56 ~r~~~p~~~~le~~la~l~g--~~~~v~~ssG~~Ai~~al~al~--------~~Gd~Vi~~~~~y~~t-~~~~------- 117 (390)
T PRK08133 56 SRFTNPTVTMFQERLAALEG--AEACVATASGMAAILAVVMALL--------QAGDHVVSSRSLFGST-VSLF------- 117 (390)
T ss_pred ECCCChHHHHHHHHHHHHhC--CCcEEEECCHHHHHHHHHHHHh--------CCCCEEEEccCcchhH-HHHH-------
Confidence 45667788999999999985 4678999999999999987653 2567888877666543 1110
Q ss_pred ccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHH
Q psy8199 372 FKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREI 451 (965)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l 451 (965)
..........+.+++. .|++++++++. +++.+|++|. ++|++|.+.+ +++|.++
T Consensus 118 -~~~~~~~G~~v~~vd~-----------------~d~~~l~~~i~---~~tklV~ie~-p~NptG~v~d----l~~I~~l 171 (390)
T PRK08133 118 -EKIFARFGIETTFVDL-----------------TDLDAWRAAVR---PNTKLFFLET-PSNPLTELAD----IAALAEI 171 (390)
T ss_pred -HHHHHHcCcEEEEECC-----------------CCHHHHHHhcC---cCCeEEEEEC-CCCCCCCcCC----HHHHHHH
Confidence 0001111123344433 25677888774 4577888887 7999998876 8999999
Q ss_pred HHhcCCeEEEeccccCCCcccccccccccCCCcceee--eccccCCCcccc-eeeeecHHHHHhhhccCCcccccccCCC
Q psy8199 452 CNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLC--LSKGITGGYLPL-SLVMTTDKIYNSIYYKNNINIFLHSHSY 528 (965)
Q Consensus 452 ~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt--~sK~l~gG~~pi-g~v~~~~~i~~~~~~~~~~~~~~~~~t~ 528 (965)
|++||+++|+|+++... ..... .....|+++ ++|.++|...++ |++++++++++.+.. .......
T Consensus 172 a~~~gi~livD~t~~~~-~~~~p-----l~~g~Divv~S~sK~~~g~g~~~GG~vv~~~~~~~~~~~------~~~~~g~ 239 (390)
T PRK08133 172 AHAAGALLVVDNCFCTP-ALQQP-----LKLGADVVIHSATKYLDGQGRVLGGAVVGSKELMEEVFG------FLRTAGP 239 (390)
T ss_pred HHHcCCEEEEECCCccc-ccCCc-----hhhCCcEEEeecceeecCCcceEeEEEEcCHHHHHHHHH------HHHHhCC
Confidence 99999999999998522 11111 122357774 679987754677 566677776655542 1111223
Q ss_pred CCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHccc-----CCCceee----------eeceeEEEEEEEe
Q psy8199 529 SGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLI-----THPKIIN----------FRQKGMIWAFDVI 589 (965)
Q Consensus 529 ~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~-----~~~~i~~----------v~g~G~~~~i~~~ 589 (965)
..+|..+..++..|+.+.. ..++..++...+.+.|++.. .+|++.. ..|-|.|+.|++.
T Consensus 240 ~~~~~~a~~~l~gl~tl~~--R~~~~~~~a~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~g~g~~~s~~l~ 313 (390)
T PRK08133 240 TLSPFNAWVFLKGLETLSL--RMEAHSANALALAEWLEAHPGVERVFYPGLPSHPQHELAKRQQKGGGAIVSFEVK 313 (390)
T ss_pred CCCHHHHHHHHcccchHHH--HHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHHhCCCCceEEEEEEc
Confidence 4566666666666654432 23444556666666665431 2333221 3467889999985
|
|
| >PRK13580 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=3e-12 Score=143.35 Aligned_cols=215 Identities=11% Similarity=0.093 Sum_probs=138.7
Q ss_pred HHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccccccccccc-C-CC
Q psy8199 406 CAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHA-E-IW 483 (965)
Q Consensus 406 ~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~-~-~~ 483 (965)
.|.+++++.+.+..+ ..+++ . ..+. +...| +++|+++|++||+++++|++|+ +|-.|-....+.+ . -.
T Consensus 207 iD~d~l~~~~~~~~p--lvii~-g-~S~~-~~~~d----l~~i~eia~~~gA~L~VD~AH~-~Gligg~~~~~~~~~~~~ 276 (493)
T PRK13580 207 LDYDEIAALAREFKP--LILVA-G-YSAY-PRRVN----FAKLREIADEVGAVLMVDMAHF-AGLVAGKVFTGDEDPVPH 276 (493)
T ss_pred cCHHHHHHHHhhcCC--EEEEe-C-cccc-CCCcC----HHHHHHHHHHcCCEEEEECchh-hceeccccchhhcCCCCC
Confidence 478899988875322 33333 3 3344 44556 9999999999999999999996 6655421111111 1 14
Q ss_pred ccee--eeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcc---cHHHHHHHHH
Q psy8199 484 PDFL--CLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKD---NILQRISQDM 558 (965)
Q Consensus 484 pDiv--t~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~---~~~~~~~~~~ 558 (965)
.|++ |++|++.|. ..|++++++++.+.+.. ..++.+++. .+..++++..++..+.++ ...+++.++.
T Consensus 277 ~D~vtgT~hKaL~GP--~GG~I~~~~~l~~~L~~---a~P~i~gg~---l~p~iAA~avAl~e~~~~ef~~y~~~l~~Na 348 (493)
T PRK13580 277 ADIVTTTTHKTLRGP--RGGLVLAKKEYADAVDK---GCPLVLGGP---LPHVMAAKAVALAEARTPEFQKYAQQVVDNA 348 (493)
T ss_pred CcEEEeCChhhccCC--CeEEEEecHHHHHHHhh---CCCcccCCC---ccHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 6877 568999763 34778889998888753 223443332 233444444455554433 3688999999
Q ss_pred HHHHHHHHcccCCCceeee--eceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEee-------c----CCEEEEeC
Q psy8199 559 KKITKALTSLITHPKIINF--RQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRP-------I----GNTVYLMP 625 (965)
Q Consensus 559 ~~l~~~L~~l~~~~~i~~v--~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~-------~----~~~lR~~p 625 (965)
++|++.|.+. ++..+ .....++.+++. +. ......+.+.|.+.||++.+ . ...|||++
T Consensus 349 ~~La~~L~~~----G~~vv~ggTdshIV~V~lg--~~---~~~g~~a~~~L~e~GI~vn~i~~Ptvp~g~~~~srLRIg~ 419 (493)
T PRK13580 349 RALAEGFLKR----GARLVTGGTDNHLVLIDVT--SF---GLTGRQAESALLDAGIVTNRNSIPSDPNGAWYTSGIRLGT 419 (493)
T ss_pred HHHHHHHHhc----CCCccCCCCCCCEEEEEeC--CH---HHHHHHHHHHHHHCCeEEccccCCCCCCCCCCCceEEecc
Confidence 9999999875 32222 134567777764 21 11123566789999999863 1 25799999
Q ss_pred Cc----ccCHHHHHHHHHhhhccccc
Q psy8199 626 PY----ILNKNEIQHMTSAIFQTFNE 647 (965)
Q Consensus 626 ~~----~~t~~~i~~~~~~l~~~~~~ 647 (965)
+. .+++++++++.+.+.+++..
T Consensus 420 ~A~ttrg~teedi~~iad~l~~~l~~ 445 (493)
T PRK13580 420 PALTTLGMGSDEMDEVAELIVKVLSN 445 (493)
T ss_pred chhhhcCCCHHHHHHHHHHHHHHHHh
Confidence 88 55799999999998765543
|
|
| >PRK08247 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.54 E-value=7e-13 Score=148.56 Aligned_cols=237 Identities=14% Similarity=0.179 Sum_probs=154.2
Q ss_pred cCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCc
Q psy8199 291 LSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQ 370 (965)
Q Consensus 291 ~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~ 370 (965)
...+.++...+|+++++++.+ .+..++++||++|+..++.+. .++++||+.++.|++.......
T Consensus 46 y~r~~~pt~~~le~~la~l~g--~~~~~~~~sG~~ai~~~~~ll---------~~Gd~Vl~~~~~y~~t~~~~~~----- 109 (366)
T PRK08247 46 YSRTGNPTRGVLEQAIADLEG--GDQGFACSSGMAAIQLVMSLF---------RSGDELIVSSDLYGGTYRLFEE----- 109 (366)
T ss_pred ccCCCCchHHHHHHHHHHHhC--CCcEEEEcCHHHHHHHHHHHh---------CCCCEEEEecCCcCcHHHHHHH-----
Confidence 456788889999999999985 455788999999998776432 2568899999999874211100
Q ss_pred CccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHH
Q psy8199 371 SFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVRE 450 (965)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~ 450 (965)
........+.+++. .|++++++++. +++.+|++|. ++|+.|... .+++|.+
T Consensus 110 ----~~~~~G~~v~~vd~-----------------~d~~~l~~~i~---~~tklv~le~-P~NP~~~~~----dl~~I~~ 160 (366)
T PRK08247 110 ----HWKKWNVRFVYVNT-----------------ASLKAIEQAIT---PNTKAIFIET-PTNPLMQET----DIAAIAK 160 (366)
T ss_pred ----HhhccCceEEEECC-----------------CCHHHHHHhcc---cCceEEEEEC-CCCCCCcHH----HHHHHHH
Confidence 00011122334332 26788888875 3567888877 688876544 4999999
Q ss_pred HHHhcCCeEEEeccccCCCcccccccccccCCCccee--eeccccCCC-cccceeeeec-HHHHHhhhccCCcccccccC
Q psy8199 451 ICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL--CLSKGITGG-YLPLSLVMTT-DKIYNSIYYKNNINIFLHSH 526 (965)
Q Consensus 451 l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDiv--t~sK~l~gG-~~pig~v~~~-~~i~~~~~~~~~~~~~~~~~ 526 (965)
+|++||+++|+||+|.. +..+.. .....|++ +++|.++|. -...|+++++ +++.+.+.. .....
T Consensus 161 la~~~g~~lIvD~t~~~-~~~~~p-----~~~g~di~i~S~sK~~~g~~d~~~G~iv~~~~~l~~~~~~------~~~~~ 228 (366)
T PRK08247 161 IAKKHGLLLIVDNTFYT-PVLQRP-----LEEGADIVIHSATKYLGGHNDVLAGLVVAKGQELCERLAY------YQNAA 228 (366)
T ss_pred HHHHcCCEEEEECCCcc-ccccCc-----hhcCCcEEEeecceeccCCCceeeeEEecChHHHHHHHHH------HHHhc
Confidence 99999999999999831 111111 12235666 578988762 2356777776 667665543 11223
Q ss_pred CCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcccCCCceee--eeceeEEEEEEEe
Q psy8199 527 SYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIIN--FRQKGMIWAFDVI 589 (965)
Q Consensus 527 t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~i~~--v~g~G~~~~i~~~ 589 (965)
+...+|..+..++..|+.+.. ..++.+++.+.+.+.|++ +|++.. .++.|.|++|++.
T Consensus 229 g~~~s~~~a~l~~~~l~tl~~--r~~~~~~~a~~l~~~L~~---~p~v~~v~~P~~gg~~sf~~~ 288 (366)
T PRK08247 229 GAVLSPFDSWLLIRGMKTLAL--RMRQHEENAKAIAAFLNE---QPGVTDVLYPGRGGMLSFRLQ 288 (366)
T ss_pred CCCCChHHHHHHHhccCcHHH--HHHHHHHHHHHHHHHHHh---CCCeeEEecCCcCcEEEEEEC
Confidence 344577777777777764432 344556677777777654 466653 4457999999874
|
|
| >TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB | Back alignment and domain information |
|---|
Probab=99.54 E-value=8.1e-13 Score=149.00 Aligned_cols=209 Identities=17% Similarity=0.265 Sum_probs=160.0
Q ss_pred EeEeeccCCCCCCCCCCCCCCc-C--CCCcccccCCCHHHHHHHHHHHHHC--CCCEEEEeeccCCCCcccHHHHHHHHH
Q psy8199 683 VLLSIKTGGCTEDCGYCPQSTH-Y--NTEITATKILSIESVITAAQKAKSD--GATRFCMGAAWRELKDRDLDNIENMIC 757 (965)
Q Consensus 683 ~~i~~~s~~C~~~C~fC~~~~~-~--~~~~~~~~~~~~eei~~~~~~~~~~--g~~~i~l~~g~~~~~~~~~~~~~~~~~ 757 (965)
..+.+ +.+|+.+|.||..... . .+.....+.++++|+++.+....+. ++..+.|.|.++|+.. .+...+.++
T Consensus 26 ~~~~v-t~~CNl~C~yC~~~~~~~~esrpg~~~~~Ltpee~~~~i~~v~~~~~~~~~V~iaG~GEPLl~--~e~~~~~l~ 102 (442)
T TIGR01290 26 MHLAV-APACNIQCNYCNRKYDCANESRPGVVSELLTPEQALRKARQVAAEIPQLSVVGIAGPGDPLAN--IGKTFQTLE 102 (442)
T ss_pred EEEec-CCCCCCcCcCCCCCCCCCcCCCCccccccCCHHHHHHHHHHHHHhcCCCCEEEEecCCCcccC--ccccHHHHH
Confidence 45667 9999999999974321 0 0111123458999999999887764 5677888774667554 456777777
Q ss_pred HHHhc--CcEeEE-ecCCCCHHHHHHHHHhCCCeEeccCCC-CHHHHhcccC----------CC-----CHHHHHHHHHH
Q psy8199 758 EVKKI--GLETCL-TLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIIS----------TR-----DYENRLNTLKN 818 (965)
Q Consensus 758 ~i~~~--~~~i~~-~~~~~~~e~l~~Lk~aG~~~i~i~~es-~~~~~~~i~~----------~~-----~~~~~~~~i~~ 818 (965)
.+++. ++.+++ ++|.+..+.++.|++.|++.+.+++.+ +++.++++.+ +. .+++.++.++.
T Consensus 103 ~~~~~~~~i~i~lsTNG~~l~e~i~~L~~~gvd~V~islka~d~e~~~~Iy~~v~~~g~~~tG~~~~~il~e~~l~~l~~ 182 (442)
T TIGR01290 103 LVARQLPDVKLCLSTNGLMLPEHVDRLVDLGVGHVTITINAIDPAVGEKIYPWVWYEGERYTGREAADLLIERQLEGLEK 182 (442)
T ss_pred HHHHhcCCCeEEEECCCCCCHHHHHHHHHCCCCeEEEeccCCCHHHHhhcchhhccccccccCcchHHHHHHHHHHHHHH
Confidence 77764 677766 567777999999999999999999999 9999988741 11 25677899999
Q ss_pred HHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccccccC--CCCCC--CCCCCCHHHHHHHHHHHHHHCC
Q psy8199 819 VRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIK--GTPLY--GSSILDPLEFIRTIAVARITMP 894 (965)
Q Consensus 819 ~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~--gT~l~--~~~~~~~~~~~~~ia~~R~~lp 894 (965)
+.+.|+.+....++-.|.+++++.+.++++++++ ...+.+.+|.|.| |+++. ..++++.+++.++...++..+|
T Consensus 183 l~~~G~~v~v~~vlIpGiND~~i~~l~~~~~~lg--~~~~nl~p~~~~p~~G~~~~~~~~~~ps~e~l~~~~~~~~~~~~ 260 (442)
T TIGR01290 183 LTERGILVKVNSVLIPGINDEHLVEVSKQVKELG--AFLHNVMPLISAPEHGTVYGLNGQREPDPDELAALRDRLEMGTP 260 (442)
T ss_pred HHhCCCeEEEEEEeeCCcCHHHHHHHHHHHHhCC--CcEEEeecCCCccccCCccCcCCCCCcCHHHHHHHHHHHHhhhh
Confidence 9999998777666655677899999999999999 7778889999888 88764 4577888888888888877776
Q ss_pred CC
Q psy8199 895 TS 896 (965)
Q Consensus 895 ~~ 896 (965)
.+
T Consensus 261 ~~ 262 (442)
T TIGR01290 261 QM 262 (442)
T ss_pred hh
Confidence 44
|
This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model. |
| >TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.1e-12 Score=137.94 Aligned_cols=195 Identities=18% Similarity=0.252 Sum_probs=143.8
Q ss_pred cCCCCCCCCCCCCCCcCCCCcccccCCCHHHHHHHHHHHHHCC---CCEEEEeeccCCCCcccHHHHHHHHHHHHhcCcE
Q psy8199 689 TGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDG---ATRFCMGAAWRELKDRDLDNIENMICEVKKIGLE 765 (965)
Q Consensus 689 s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g---~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~~~~ 765 (965)
|.+||++|.||.....+.. ...+.++++++++++..+.... ...|.++|| .|+.. .+.+.++++.+++.++.
T Consensus 22 ~~gCnl~C~~C~~~~~~~~--~~~~~~s~e~i~~~i~~~~~~~~~~~~~I~~~GG-EPll~--~~~~~~li~~~~~~g~~ 96 (235)
T TIGR02493 22 MQGCPLRCQYCHNPDTWDL--KGGTEVTPEELIKEVGSYKDFFKASGGGVTFSGG-EPLLQ--PEFLSELFKACKELGIH 96 (235)
T ss_pred ECCCCCcCCCCCChhhccC--CCCEECCHHHHHHHHHHhHHHHhcCCCeEEEeCc-ccccC--HHHHHHHHHHHHHCCCC
Confidence 7899999999986532221 1234589999999888766542 256888775 46444 45567888888887765
Q ss_pred eEE-ecCCCC--HHHHHHHHHhCCCeEeccCCC-CHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEec--CCCHH
Q psy8199 766 TCL-TLGMLN--ENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL--SESRD 839 (965)
Q Consensus 766 i~~-~~~~~~--~e~l~~Lk~aG~~~i~i~~es-~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl--~et~e 839 (965)
+.+ ++|.+. .+.++.+.+ .++.+.+++++ +++.++++.+. ++++.+++++.+++.|+++...+++.. .++.+
T Consensus 97 ~~i~TNG~~~~~~~~~~~ll~-~~d~v~isl~~~~~~~~~~~~g~-~~~~v~~~i~~l~~~g~~~~v~~vv~~~~~~n~~ 174 (235)
T TIGR02493 97 TCLDTSGFLGGCTEAADELLE-YTDLVLLDIKHFNPEKYKKLTGV-SLQPTLDFAKYLAKRNKPIWIRYVLVPGYTDSEE 174 (235)
T ss_pred EEEEcCCCCCccHHHHHHHHH-hCCEEEEeCCCCCHHHHHHHHCC-CcHHHHHHHHHHHhCCCcEEEEEeeeCCcCCCHH
Confidence 544 455433 556666666 47899999999 89999998765 789999999999999998776666654 46889
Q ss_pred HHHHHHHHHHhcCCCCCceeecccccc---------CCCCCCCCCCCCHHHHHHHHHHHHH
Q psy8199 840 QRAELIFQLANLNPYPESVPINNLVQI---------KGTPLYGSSILDPLEFIRTIAVARI 891 (965)
Q Consensus 840 d~~~~l~~l~~l~~~~~~i~~~~~~P~---------~gT~l~~~~~~~~~~~~~~ia~~R~ 891 (965)
++.+.++++.+++. ...+.+.+|.|. +..++.+.++++.+++.++.+++|.
T Consensus 175 ei~~l~~~~~~l~~-~~~~~~~p~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (235)
T TIGR02493 175 DIEALAEFVKTLPN-VERVEVLPYHQLGVYKWEALGIEYPLEGVKPPNKEQLERAAEIFKE 234 (235)
T ss_pred HHHHHHHHHHhCCC-CceEEecCCCcccHHHHHHcCCcCccCCCCCCCHHHHHHHHHHHhh
Confidence 99999999999982 356667777764 2334566788899999888887764
|
An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue. |
| >PRK08249 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.1e-13 Score=149.91 Aligned_cols=241 Identities=13% Similarity=0.138 Sum_probs=162.1
Q ss_pred cCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCc
Q psy8199 291 LSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQ 370 (965)
Q Consensus 291 ~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~ 370 (965)
.+++.++...+++++++++.+ .+.+++++||++|+..++..... ++++||+.++.|++........
T Consensus 58 y~r~~~p~~~~le~~lA~l~g--~~~~i~~ssG~~Ai~~~l~all~--------~GD~Vi~~~~~y~~~~~~~~~~---- 123 (398)
T PRK08249 58 YSRNTNPTVQAFEEKVRILEG--AEAATAFSTGMAAISNTLYTFLK--------PGDRVVSIKDTYGGTNKIFTEF---- 123 (398)
T ss_pred ccCCCChHHHHHHHHHHHHhC--CCeEEEeCChHHHHHHHHHHhcC--------CCCEEEEcCCchHHHHHHHHHH----
Confidence 356778889999999999985 56788889999999999876532 5688999999997642110000
Q ss_pred CccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHH
Q psy8199 371 SFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVRE 450 (965)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~ 450 (965)
.......+.+++. .|+++++++++ +++.+|++|. ++|++|.+.+ +++|.+
T Consensus 124 -----~~~~Gi~v~~vd~-----------------~d~e~l~~~i~---~~tklV~ie~-p~NPtg~v~d----l~~I~~ 173 (398)
T PRK08249 124 -----LPRMGVDVTLCET-----------------GDHEQIEAEIA---KGCDLLYLET-PTNPTLKIVD----IERLAA 173 (398)
T ss_pred -----HhhCCeEEEEcCC-----------------CCHHHHHHhcC---CCCeEEEEEC-CCCCCCccCC----HHHHHH
Confidence 0001111222221 26788888885 3567888887 7899999887 899999
Q ss_pred HHHhcCCeEEEeccccCCCcccccccccccCCCccee--eeccccCCCcccc-eeeeecHHHHHhhhccCCcccccccCC
Q psy8199 451 ICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL--CLSKGITGGYLPL-SLVMTTDKIYNSIYYKNNINIFLHSHS 527 (965)
Q Consensus 451 l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDiv--t~sK~l~gG~~pi-g~v~~~~~i~~~~~~~~~~~~~~~~~t 527 (965)
+|++||+++|+|++|..+. ... ......|++ +++|.++|..-.+ |++++++++++.+.. +.....
T Consensus 174 la~~~gi~livD~t~a~~~-~~~-----~l~~~~Divv~S~sK~l~g~~~~~gG~vv~~~~l~~~l~~------~~~~~g 241 (398)
T PRK08249 174 AAKKVGALVVVDNTFATPI-NQN-----PLALGADLVIHSATKFLSGHADALGGVVCGSKELMEQVYH------YREING 241 (398)
T ss_pred HHHHcCCEEEEECCcCccc-cCC-----chhhCCCEEeccCceecCCCCCceEEEEECCHHHHHHHHH------HHHhcC
Confidence 9999999999999987331 111 112346766 4689998632344 667778888877654 122233
Q ss_pred CCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHccc-----CCCceee----------eeceeEEEEEEEe
Q psy8199 528 YSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLI-----THPKIIN----------FRQKGMIWAFDVI 589 (965)
Q Consensus 528 ~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~-----~~~~i~~----------v~g~G~~~~i~~~ 589 (965)
...+|..++.++..|+.+.. ..++..++.+++.+.|++.. .+|++.. ..|-|.+++|++.
T Consensus 242 ~~~s~~~a~l~l~~l~tL~~--R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~sf~~~ 316 (398)
T PRK08249 242 ATMDPMSAYLILRGMKTLKL--RVRQQQESAMALAKYLQTHPKVEAVYYPGLETHPNHEIAKAQMRGFGGILSFVLK 316 (398)
T ss_pred CCCCHHHHHHHHhCcchHHH--HHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEEc
Confidence 45678888888888876642 35666777788888887532 2444321 2467889999985
|
|
| >COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.2e-12 Score=127.74 Aligned_cols=343 Identities=14% Similarity=0.167 Sum_probs=197.1
Q ss_pred cccccchhccCCCCCHH----HHHHHHHHHhh----------ccccccCCCCcHHHHHHHHHHHhhcCCCC--CeEEEcC
Q psy8199 258 DAISSWWVNLFGHSNSY----INKALKNQLNK----------LEHVMLSNLTHKPVIKLSEKLSSLTQYKL--GHCFYGS 321 (965)
Q Consensus 258 D~~~~~~~~~lGh~~p~----v~~av~~~~~~----------~~~~~~~~~~~~~~~~la~~l~~~~~~~~--~~v~~~~ 321 (965)
|..-+-+...||-++|. +.+..++...+ +..|..+.+.......|++.+.+.++.+. +.+.+||
T Consensus 25 d~Lrt~g~imLggGNPa~iPem~~~f~~~~aemla~~~~~e~~cnY~~pQG~~~li~ala~~l~~~ygwnit~~NIalTn 104 (417)
T COG3977 25 DGLRTPGAIMLGGGNPARIPEMDDYFQDLLAEMLASGKATEALCNYDGPQGKAVLIDALAKMLRREYGWNITAQNIALTN 104 (417)
T ss_pred hhccCCCceeeCCCCcccChhHHHHHHHHHHHHHhcchHHHHHhcCCCCcchhHHHHHHHHHHHHHhCCCCccceeeecC
Confidence 33333345666666654 44444332222 12334455667778899999999887654 4788999
Q ss_pred ChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChh
Q psy8199 322 DGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSAN 401 (965)
Q Consensus 322 sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (965)
+...|.-.+..+.-.++ .-| +.|.-++-..+-|-||....+. ...|....+....++.-
T Consensus 105 GSQs~fFYlfNlF~G~~-sdG-~~k~illPLaPeYiGY~d~~l~-------~d~fVs~kP~iel~~~g------------ 163 (417)
T COG3977 105 GSQSAFFYLFNLFAGRR-SDG-TEKKILLPLAPEYIGYADAGLE-------EDLFVSAKPNIELLPAG------------ 163 (417)
T ss_pred CccchHHHHHHHhcCcc-CCC-cceeEeeccChhhccccccccC-------ccceeeccCCccccccc------------
Confidence 87777776666553321 112 1233355567788888543322 11122222222222210
Q ss_pred HHHH-HHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccccccccccc
Q psy8199 402 EIAR-CAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHA 480 (965)
Q Consensus 402 ~~~~-~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~ 480 (965)
.+.+ .|.++|. ..+.+.+|++.- +.|++|.+. +++.+.+|.+|+++||++||+|.+|. .=.-|--|.-...
T Consensus 164 ~FKY~vDF~~l~-----i~e~~g~ic~SR-PtNPTGNVl-TdeE~~kldalA~~~giPliIDnAYg-~PFP~iifsd~~~ 235 (417)
T COG3977 164 QFKYHVDFEHLH-----IGESTGAICVSR-PTNPTGNVL-TDEELAKLDALARQHGIPLIIDNAYG-VPFPGIIFSDATP 235 (417)
T ss_pred ceeeccCHHHcc-----cccccceEEecC-CCCCCCCcc-cHHHHHHHHHHhhhcCCcEEEecccC-CCCCceecccccc
Confidence 0111 2445443 246789999987 789999877 77789999999999999999999983 3222221211111
Q ss_pred CCCccee---eecc-ccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHH-----HhcccHH
Q psy8199 481 EIWPDFL---CLSK-GITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEI-----FNKDNIL 551 (965)
Q Consensus 481 ~~~pDiv---t~sK-~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~-----~~~~~~~ 551 (965)
--.++++ ++|| ||.| .+.|.++++++++.++..... --+......+.|.|...++- +.++-+.
T Consensus 236 ~w~~NiilC~SLSK~GLPG--~R~GIiIane~viqaitnmn~------iisLap~~~G~Aia~~mie~gdl~rlseqVIr 307 (417)
T COG3977 236 LWNENIILCMSLSKLGLPG--SRCGIIIANEKVIQAITNMNG------IISLAPGRMGPAIAAEMIESGDLLRLSEQVIR 307 (417)
T ss_pred cCCCCEEEEeehhhcCCCC--cceeEEEccHHHHHHHHhccc------eeeecCCCccHHHHHHHhhcchHHHHHHHhhh
Confidence 1235665 4578 6766 799999999999998865211 01111222333333333321 1111122
Q ss_pred HHHHHHHHHHHHHHHc-ccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecC------------
Q psy8199 552 QRISQDMKKITKALTS-LITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG------------ 618 (965)
Q Consensus 552 ~~~~~~~~~l~~~L~~-l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~------------ 618 (965)
.-.+.+.+...+.|++ +.+.+. .--+++|.++.+-.- .| -.-..+.++++|+++|+++.|+.
T Consensus 308 PFY~~~~q~~~~~l~~~lp~~~~-~iHkpEGAIFlWLWf-~d---LPItt~~LYq~LKa~Gvl~VPG~~FFpGl~~ewpH 382 (417)
T COG3977 308 PFYRNRVQTTIAILRRYLPEYRC-LIHKPEGAIFLWLWF-KD---LPITTEELYQRLKARGVLMVPGHYFFPGLDKEWPH 382 (417)
T ss_pred HHHHHHHHHHHHHHHHhcCccce-eeecCCcceeehhhh-cc---CCCCHHHHHHHHHhCeEEEecccccCCCCCCCCCC
Confidence 2233333333344433 233332 345788887766543 22 11225579999999999998742
Q ss_pred --CEEEEeCCcccCHHHHHHHHHhhhcc
Q psy8199 619 --NTVYLMPPYILNKNEIQHMTSAIFQT 644 (965)
Q Consensus 619 --~~lR~~p~~~~t~~~i~~~~~~l~~~ 644 (965)
.++|++ ++-+++.++.-+.++.+.
T Consensus 383 ~hqC~Rmn--~~~~~~~ie~Gva~lae~ 408 (417)
T COG3977 383 THQCMRMN--YVPEPEKIEKGVAILAEE 408 (417)
T ss_pred ccceEEEe--cCCCHHHHHHHHHHHHHH
Confidence 479999 889999999888777643
|
|
| >TIGR03235 DNA_S_dndA cysteine desulfurase DndA | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.2e-12 Score=146.91 Aligned_cols=301 Identities=13% Similarity=0.044 Sum_probs=176.6
Q ss_pred cccccccchhccCCCCCHHHHHHHHHHHhhccccccCCC-------CcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHH
Q psy8199 256 YLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNL-------THKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVE 328 (965)
Q Consensus 256 ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~-------~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~ 328 (965)
|||..+. |..++.+.+|+.+.+..... ..... ..+...++.++++++++.+.+.++|++|+++|++
T Consensus 1 yld~a~~------~~~~~~v~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~v~~~~g~t~a~~ 73 (353)
T TIGR03235 1 YLDHNAT------TPIDPAVAEAMLPWLLEEFG-NPSSRTHEFGHNAKKAVERARKQVAEALGADTEEVIFTSGATESNN 73 (353)
T ss_pred CCCCCCC------CCCCHHHHHHHHHHHHhcCC-CCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHH
Confidence 6776554 33689999999988754211 11111 1234578888999999877779999999999999
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHH
Q psy8199 329 VALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAI 408 (965)
Q Consensus 329 ~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 408 (965)
.+++...... ..++++.|++.. ..|.+........ ......+..++.+.. +. .|+
T Consensus 74 ~~l~~l~~~~---~~~g~~~vi~~~-~~~~s~~~~~~~~---------~~~G~~v~~v~~~~~-~~-----------~d~ 128 (353)
T TIGR03235 74 LAILGLARAG---EQKGKKHIITSA-IEHPAVLEPIRAL---------ERNGFTVTYLPVDES-GR-----------IDV 128 (353)
T ss_pred HHHHHHHHhc---ccCCCCeeeEcc-cccHHHHHHHHHH---------HhcCCEEEEEccCCC-Cc-----------CCH
Confidence 9988764321 012234555544 4444322221110 001123444444321 11 367
Q ss_pred HHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcceee
Q psy8199 409 FDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLC 488 (965)
Q Consensus 409 ~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt 488 (965)
++|++++. +++.+|+++. +++++|.+.+ +++|.++|+++|+++|+|+++. +|.. ........+|+++
T Consensus 129 ~~l~~~l~---~~~~lv~~~~-~~n~tG~~~~----~~~I~~l~~~~~~~~ivD~a~~-~g~~----~~~~~~~~~D~~~ 195 (353)
T TIGR03235 129 DELADAIR---PDTLLVSIMH-VNNETGSIQP----IREIAEVLEAHEAFFHVDAAQV-VGKI----TVDLSADRIDLIS 195 (353)
T ss_pred HHHHHhCC---CCCEEEEEEc-ccCCceeccC----HHHHHHHHHHcCCEEEEEchhh-cCCc----cccccccCCCEEE
Confidence 88888874 3457777777 7999999987 8999999999999999999986 5432 1222223479988
Q ss_pred ec--cccCCCcccceeeeecHHHHHhhhc-----cCCcccccccCCCCCCHHHHHHHHHHHHHHhc--ccHHHHHHHHHH
Q psy8199 489 LS--KGITGGYLPLSLVMTTDKIYNSIYY-----KNNINIFLHSHSYSGNPLACCAALATLEIFNK--DNILQRISQDMK 559 (965)
Q Consensus 489 ~s--K~l~gG~~pig~v~~~~~i~~~~~~-----~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~--~~~~~~~~~~~~ 559 (965)
+| |.+ |...+|+++++++....... ++...... ...+.|+...++..++|+.+.+ +...++.+++.+
T Consensus 196 ~s~~K~~--gp~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~ 271 (353)
T TIGR03235 196 CSGHKIY--GPKGIGALVIRKRGKPKAPLKPIMFGGGQERGL--RPGTLPVHLIVGMGEAAEIARRNAQAWEVKLRAMRN 271 (353)
T ss_pred eehhhcC--CCCceEEEEEccCcccccccCceeeCCCCcCcc--ccCCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 77 863 32347888888774322110 00000001 1123456666777777876642 345677777777
Q ss_pred HHHHHHHcccCCCceeeee----ceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec
Q psy8199 560 KITKALTSLITHPKIINFR----QKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI 617 (965)
Q Consensus 560 ~l~~~L~~l~~~~~i~~v~----g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~ 617 (965)
+++++|++. ++..+. ....+..+.+. . . ....+...|.+ ||.+.++
T Consensus 272 ~l~~~l~~~----g~~~~~~~~~~~~~i~~~~~~--~----~-~~~~v~~~L~~-~i~v~~g 321 (353)
T TIGR03235 272 QLRDALQTL----GVKLNGDPAETIPHILNFSID--G----V-NSEALIVNLRA-DAAVSTG 321 (353)
T ss_pred HHHHHhccC----CeEEeCCcccccCCEEEEEeC--C----c-CHHHHHHHHhC-CeEEEch
Confidence 887777552 333221 11224444332 1 1 13356677754 8888764
|
This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase. |
| >PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.3e-12 Score=147.17 Aligned_cols=175 Identities=21% Similarity=0.330 Sum_probs=140.5
Q ss_pred EeEeEeeccCCCCCCCCCCCCCCcCCCCcccccCCCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHH
Q psy8199 681 LAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVK 760 (965)
Q Consensus 681 ~~~~i~~~s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~ 760 (965)
+...+++ |+.|+.+|.||........ ....++.+++.+.++++.+.|+..|.|+||+ |+... .+.++++.++
T Consensus 16 ~~l~i~i-T~~CNl~C~~C~~~~~~~~---~~~~~~~e~~~~ii~~~~~~g~~~v~~~GGE-Pll~~---~~~~il~~~~ 87 (378)
T PRK05301 16 LWLLAEL-TYRCPLQCPYCSNPLDLAR---HGAELSTEEWIRVLREARALGALQLHFSGGE-PLLRK---DLEELVAHAR 87 (378)
T ss_pred eEEEEEe-cCccCcCCCCCCCcccccc---ccCCCCHHHHHHHHHHHHHcCCcEEEEECCc-cCCch---hHHHHHHHHH
Confidence 4456777 9999999999976532111 1235899999999999989999999998764 65553 3667777777
Q ss_pred hcCc--EeEEecCCCCHHHHHHHHHhCCCeEeccCCC-CHHHHhcccCC-CCHHHHHHHHHHHHHcCCceeeeEEEecCC
Q psy8199 761 KIGL--ETCLTLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIIST-RDYENRLNTLKNVRNVGINICCGGIIGLSE 836 (965)
Q Consensus 761 ~~~~--~i~~~~~~~~~e~l~~Lk~aG~~~i~i~~es-~~~~~~~i~~~-~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~e 836 (965)
+.++ .+.+|...++++.++.|+++|++.+.+++++ +++.++.+++. .++++.+++++.+++.|+++...+++ ...
T Consensus 88 ~~g~~~~i~TNG~ll~~~~~~~L~~~g~~~v~iSldg~~~e~~d~irg~~g~f~~~~~~i~~l~~~g~~v~i~~vv-~~~ 166 (378)
T PRK05301 88 ELGLYTNLITSGVGLTEARLAALKDAGLDHIQLSFQDSDPELNDRLAGTKGAFAKKLAVARLVKAHGYPLTLNAVI-HRH 166 (378)
T ss_pred HcCCcEEEECCCccCCHHHHHHHHHcCCCEEEEEecCCCHHHHHHHcCCCchHHHHHHHHHHHHHCCCceEEEEEe-ecC
Confidence 6555 4555666789999999999999999999999 89999999875 48999999999999999998766554 468
Q ss_pred CHHHHHHHHHHHHhcCCCCCceeecccccc
Q psy8199 837 SRDQRAELIFQLANLNPYPESVPINNLVQI 866 (965)
Q Consensus 837 t~ed~~~~l~~l~~l~~~~~~i~~~~~~P~ 866 (965)
+.+++.+.++++.+++ ++.+.+..+.|.
T Consensus 167 N~~~i~~~~~~~~~lg--v~~i~~~~~~~~ 194 (378)
T PRK05301 167 NIDQIPRIIELAVELG--ADRLELANTQYY 194 (378)
T ss_pred CHHHHHHHHHHHHHcC--CCEEEEeccccc
Confidence 9999999999999999 888877755543
|
|
| >PRK06234 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=9.7e-13 Score=148.87 Aligned_cols=261 Identities=13% Similarity=0.125 Sum_probs=167.4
Q ss_pred cCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCc
Q psy8199 291 LSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQ 370 (965)
Q Consensus 291 ~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~ 370 (965)
...++++...+|.++++++.+ .+.+++++||+.|+..++..... ++++|++.++.|.+. ......
T Consensus 58 Y~r~~~p~~~~Le~~iA~~~g--~~~~l~~~sG~~Ai~~al~~ll~--------~Gd~Vl~~~~~y~~~-~~~~~~---- 122 (400)
T PRK06234 58 YSRLGNPTSTEVENKLALLEG--GEAAVVAASGMGAISSSLWSALK--------AGDHVVASDTLYGCT-FALLNH---- 122 (400)
T ss_pred ccCCCCccHHHHHHHHHHHhC--CCcEEEEcCHHHHHHHHHHHHhC--------CCCEEEEecCccchH-HHHHHH----
Confidence 345677888999999999986 45789999999999988875532 567888888766443 211100
Q ss_pred CccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHH
Q psy8199 371 SFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVRE 450 (965)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~ 450 (965)
........+.+++. .|++++++++. +++.+|++|. ++|++|.+.+ +++|.+
T Consensus 123 ----~~~~~G~~v~~vd~-----------------~d~e~l~~~i~---~~tklI~ies-P~NPtG~v~d----l~~I~~ 173 (400)
T PRK06234 123 ----GLTRYGVEVTFVDT-----------------SNLEEVRNALK---ANTKVVYLET-PANPTLKVTD----IKAISN 173 (400)
T ss_pred ----HHhhCCeEEEEECC-----------------CCHHHHHHHhc---cCCeEEEEEC-CCCCCCCcCC----HHHHHH
Confidence 00001112233332 26788888885 3567888887 7999998887 999999
Q ss_pred HHHhc--CCeEEEeccccCCCcccccccccccCCCccee--eeccccCCCcccc-eeeeecHHHHHhhhccCCccccccc
Q psy8199 451 ICNNY--NIHLIADEIAVGCGRTGKFFACEHAEIWPDFL--CLSKGITGGYLPL-SLVMTTDKIYNSIYYKNNINIFLHS 525 (965)
Q Consensus 451 l~~~~--g~llI~DEv~tg~gr~G~~~~~~~~~~~pDiv--t~sK~l~gG~~pi-g~v~~~~~i~~~~~~~~~~~~~~~~ 525 (965)
+|+++ |+++|+||+|..+ ..+.. .+...|++ +++|.++|..+++ |++++++++++.+.... ....
T Consensus 174 la~~~~~~i~livDea~~~~-~~~~~-----l~~g~Divv~S~sK~l~g~g~~~gG~v~~~~~~~~~l~~~~----~~~~ 243 (400)
T PRK06234 174 IAHENNKECLVFVDNTFCTP-YIQRP-----LQLGADVVVHSATKYLNGHGDVIAGFVVGKEEFINQVKLFG----IKDM 243 (400)
T ss_pred HHHhcCCCCEEEEECCCCch-hcCCc-----hhhCCcEEEeeccccccCCCCceeEEEEecHHHHHHHHHHH----HHHh
Confidence 99997 9999999998632 22211 12346776 4679998743565 88889988887765310 0111
Q ss_pred CCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHccc-----CCCcee----------eeeceeEEEEEEEee
Q psy8199 526 HSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLI-----THPKII----------NFRQKGMIWAFDVII 590 (965)
Q Consensus 526 ~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~-----~~~~i~----------~v~g~G~~~~i~~~~ 590 (965)
.+...+|..++.++..|+.+. ...++.+++..++.+.|++.. .+|++. ...+.|.++.|++.
T Consensus 244 ~g~~l~p~~a~l~~~~l~tl~--~r~~~~~~na~~~a~~L~~~~~V~~V~~p~l~~~~~~~~~~~~~~~~g~l~s~~l~- 320 (400)
T PRK06234 244 TGSVIGPFEAFLIIRGMKTLQ--IRMEKHCKNAMKVAKFLESHPAVEKVYYPGLESFEYYELAKKQMSLPGAMISFELK- 320 (400)
T ss_pred cCCCCCHHHHHHHHhccCcHH--HHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCCcHHHHHHhCCCCCceEEEEec-
Confidence 234567888888877776543 245666677777777776531 233321 12356889999885
Q ss_pred cCccchhhHHHHHHHHHHHcCc
Q psy8199 591 EDPEQIETFSKKFFVAALKNEL 612 (965)
Q Consensus 591 ~~~~~~~~~~~~~~~~l~~~Gi 612 (965)
++ ...+.+|.+.|.-.++
T Consensus 321 ~~----~~~~~~f~~~l~~~~~ 338 (400)
T PRK06234 321 GG----VEEGKVVMNNVKLATL 338 (400)
T ss_pred Cc----HHHHHHHHHhCCcceE
Confidence 22 1223456666554443
|
|
| >KOG0256|consensus | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.3e-12 Score=132.02 Aligned_cols=286 Identities=17% Similarity=0.134 Sum_probs=176.0
Q ss_pred CCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCC--
Q psy8199 313 KLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPD-- 390 (965)
Q Consensus 313 ~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 390 (965)
+++++..+++++.||++.+-+.. .+++..++..|.|.|......--+ ++..+|..-
T Consensus 145 dP~~~Vv~~G~T~ane~l~fcLa--------dpgdafLvPtPyY~gfdrdl~~rT--------------gveivpv~c~S 202 (471)
T KOG0256|consen 145 DPERVVVTNGATSANETLMFCLA--------DPGDAFLVPTPYYPGFDRDLRWRT--------------GVEIVPVHCSS 202 (471)
T ss_pred CccceEEecccchhhHHHHHHhc--------CCCceeeecCCCCCcccccceecc--------------CceEEEEEeec
Confidence 56799999999999998877654 377889999999999843322222 222333211
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhC---CCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccC
Q psy8199 391 SRNINKGNSANEIARCAIFDLEILLKKN---HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVG 467 (965)
Q Consensus 391 ~~~~~~~~~~~~~~~~d~~~le~~l~~~---~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg 467 (965)
..+. ..+.++||+++.+. +.++..+++-. ++|+-|+.. +++.|..+.++|.++++-||+||||+|
T Consensus 203 s~~f----------~itv~alE~A~~~A~~~~~kVkGvlitN-PsNPLG~~~-~~e~L~~ll~Fa~~kniHvI~DEIya~ 270 (471)
T KOG0256|consen 203 SNGF----------QITVEALEAALNQARKLGLKVKGVLITN-PSNPLGTTL-SPEELISLLNFASRKNIHVISDEIYAG 270 (471)
T ss_pred CCCc----------cccHHHHHHHHHHHHHhCCceeEEEEeC-CCCCCCCcc-CHHHHHHHHHHHhhcceEEEeehhhcc
Confidence 1111 13677888777543 45566555444 489999876 677799999999999999999999997
Q ss_pred CCcccc-cccc-ccc---CCCccee----eeccccCCCcccceeeeec-HHHHHhhhccCCcccccccCCCCCCHHHHHH
Q psy8199 468 CGRTGK-FFAC-EHA---EIWPDFL----CLSKGITGGYLPLSLVMTT-DKIYNSIYYKNNINIFLHSHSYSGNPLACCA 537 (965)
Q Consensus 468 ~gr~G~-~~~~-~~~---~~~pDiv----t~sK~l~gG~~pig~v~~~-~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aa 537 (965)
--.... +-+. +.. ...||.+ .+||=+|-.++++|++... +.+..+..+ + ++-...++..+.-
T Consensus 271 sVF~~~~F~Sv~ev~~~~~~~~~rvHivyslSKD~GlpGfRvGviYS~ne~VvsaA~k------m--ssf~~vSs~tQ~~ 342 (471)
T KOG0256|consen 271 SVFDKSEFRSVLEVRKDPHLDPDRVHIVYSLSKDFGLPGFRVGVIYSNNEDVVSAATK------M--SSFGLVSSQTQYL 342 (471)
T ss_pred cccCccCceEHHHHhhccccCCCcEEEEEEeccccCCCceEEEEEEecChHHHHHHHH------H--hhccCCcHHHHHH
Confidence 322221 2111 111 2245644 6899555423899998875 566666654 1 1122245555555
Q ss_pred HHHHHHH--Hhc---ccHHHHHHHHHHHHHHHHHcccCCCceeee-eceeEEEEEEEeec-CccchhhHHHHHHHHHHHc
Q psy8199 538 ALATLEI--FNK---DNILQRISQDMKKITKALTSLITHPKIINF-RQKGMIWAFDVIIE-DPEQIETFSKKFFVAALKN 610 (965)
Q Consensus 538 a~a~L~~--~~~---~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v-~g~G~~~~i~~~~~-~~~~~~~~~~~~~~~l~~~ 610 (965)
+..-|.- ..+ .+...+++..-+++.++|+++ +|... ++.|+|.++++..- +..+.+. ...+++++.++
T Consensus 343 la~LLSD~~f~~~yl~en~~Rl~~rh~~~~~gLk~l----gI~cl~s~AGlF~wvDlr~lL~s~tfe~-El~Lw~~i~~~ 417 (471)
T KOG0256|consen 343 LASLLSDEEFTREYLRENNKRLRIRHRYIVEGLKAL----GIPCLKSNAGLFCWVDLRKLLTSLTFEG-ELELWERILDN 417 (471)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHHHHHHHhhHHhc----CCceeecCCeeEEEEEhHHhcCcCChHH-HHHHHHHHHHh
Confidence 5444421 100 224566777777888888876 55544 45688888887410 1111111 22466777766
Q ss_pred -CcEEeecC-------CEEEEeCCcccCHHHHHHHHHhhhcccc
Q psy8199 611 -ELLLRPIG-------NTVYLMPPYILNKNEIQHMTSAIFQTFN 646 (965)
Q Consensus 611 -Gi~~~~~~-------~~lR~~p~~~~t~~~i~~~~~~l~~~~~ 646 (965)
++.+.|+. +|.|+.-+ .+.++.++-+++++...+.
T Consensus 418 vklnlSpG~s~~C~EpGWFRvcFA-n~~~~t~~~am~Ri~~~~~ 460 (471)
T KOG0256|consen 418 VKLNLSPGSSCHCHEPGWFRVCFA-NMSEETLEVAMRRLKQFLD 460 (471)
T ss_pred hccccCCCCcceecCCCeEEEEec-cCCHHHHHHHHHHHHHHHH
Confidence 99988853 79998832 4444444447777765443
|
|
| >KOG1549|consensus | Back alignment and domain information |
|---|
Probab=99.50 E-value=8.8e-13 Score=141.47 Aligned_cols=341 Identities=15% Similarity=0.083 Sum_probs=201.2
Q ss_pred cccccccccchhccCCCCCHHHHHHHHHHHhhc-cccccC--CCCcHH-HHHHHHHHHhhcCCCCCeEEEcCChhHHHHH
Q psy8199 254 KRYLDAISSWWVNLFGHSNSYINKALKNQLNKL-EHVMLS--NLTHKP-VIKLSEKLSSLTQYKLGHCFYGSDGASAVEV 329 (965)
Q Consensus 254 ~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~-~~~~~~--~~~~~~-~~~la~~l~~~~~~~~~~v~~~~sGseA~~~ 329 (965)
.-|||..+. |-.+|.|.+|+.+.+... +..+.. ++-.+. .++..+.++++.+.+..+++||+++|||+.+
T Consensus 44 ~vyld~~at------~p~~~~Vldam~~~~~~~~~nPh~~~y~w~~~~~~E~aR~~VAklInAd~~dIiFts~ATEs~Nl 117 (428)
T KOG1549|consen 44 PVYLDNQAT------GPMDPRVLDAMLPYLLEYLGNPHSRSYGWKAEDAVEAAREQVAKLINADPSDIVFTSGATESNNL 117 (428)
T ss_pred cEEEecCcC------CCCCHHHHHHHHHHHHHhhcCCCccccchhhhHHHHHHHHHHHHHhCCCCCcEEEeCCchHHHHH
Confidence 468887664 337999999999987664 222211 122222 4556667888888888889999999999999
Q ss_pred HHHH-HHHHHHhcCCCCce-EEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHH
Q psy8199 330 ALKM-SFHYWYNKGFLNKK-KFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCA 407 (965)
Q Consensus 330 Al~~-a~~~~~~~g~~~~~-~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 407 (965)
+++- ++.+. . +.. +||.+.. -|.+........-+. ...+.++|.+.... .|
T Consensus 118 vl~~v~~~~~----~-~~~k~iitl~~-eH~~v~~s~~~l~~~---------g~~Vt~lpv~~~~~------------~d 170 (428)
T KOG1549|consen 118 VLKGVARFFG----D-KTKKHIITLQT-EHPCVLDSCRALQEE---------GLEVTYLPVEDSGL------------VD 170 (428)
T ss_pred HHHHhhcccc----c-cccceEEEecc-cCcchhHHHHHHHhc---------CeEEEEeccCcccc------------cc
Confidence 9995 43331 1 122 5666654 455433222211111 13567778763221 47
Q ss_pred HHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCccee
Q psy8199 408 IFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL 487 (965)
Q Consensus 408 ~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDiv 487 (965)
++.+++.|+ +++.+|.+.- ++|+.|.++| +++|.++|+++|+.+++|-+|. .|.. ..+...+.+|++
T Consensus 171 ~~~~~~~i~---~~T~lv~I~~-Vnn~~gv~~P----v~EI~~icr~~~v~v~~DaAQa-vG~i----~vDV~eln~D~~ 237 (428)
T KOG1549|consen 171 ISKLREAIR---SKTRLVSIMH-VNNEIGVLQP----VKEIVKICREEGVQVHVDAAQA-VGKI----PVDVQELNADFL 237 (428)
T ss_pred HHHHHHhcC---CCceEEEEEe-cccCcccccc----HHHHHHHhCcCCcEEEeehhhh-cCCc----cccHHHcCchhe
Confidence 889998885 5788888998 9999999999 9999999999999999999995 6543 445556779999
Q ss_pred eec--cccCCCcccceeeeecHH-----HHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc--ccHHHHHHHHH
Q psy8199 488 CLS--KGITGGYLPLSLVMTTDK-----IYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK--DNILQRISQDM 558 (965)
Q Consensus 488 t~s--K~l~gG~~pig~v~~~~~-----i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~--~~~~~~~~~~~ 558 (965)
+++ |.++- -++|++.+++. +...+..+++.+.+.. +|- +...+...-++.+.... ......+.+..
T Consensus 238 s~s~HK~ygp--~~iGaLYvr~~~~~~~~~p~~~GGgq~r~~rs-GT~--~~~~~~~~gsA~e~~~~~~~~~~~~~~~~~ 312 (428)
T KOG1549|consen 238 SISAHKIYGP--PGIGALYVRRKRPRLRVEPPLSGGGQERGLRS-GTV--ATPLAVGLGSAAEFVNKEMAYDEAIIKRLS 312 (428)
T ss_pred eeecccccCC--CcceEEEEccCCCcccccCcccCCcccccccc-CCc--CchhhhhhHHHHHHHHhhcchhHHHHHHHH
Confidence 887 54443 34999988861 1122333333333433 332 22333333344444332 22334444556
Q ss_pred HHHHHHHHc-ccC--CCcee-eeeceeEEEEEEEeec--------C-----ccchhhHHHHHHHHHHHcCcEEeecCCEE
Q psy8199 559 KKITKALTS-LIT--HPKII-NFRQKGMIWAFDVIIE--------D-----PEQIETFSKKFFVAALKNELLLRPIGNTV 621 (965)
Q Consensus 559 ~~l~~~L~~-l~~--~~~i~-~v~g~G~~~~i~~~~~--------~-----~~~~~~~~~~~~~~l~~~Gi~~~~~~~~l 621 (965)
.++..++.. ... ..+.. .-.+....+++....+ + +..+.....+....++..|+-.......+
T Consensus 313 ~~ll~~i~~~~~~~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~s~~a~~~~~~epsy~l~~~G~~~~~~~~~i 392 (428)
T KOG1549|consen 313 EKLLMGIGQSLPEVTLNGSGKSRYPGLVSLSFPYVEGESLLMDLKDVALSSGSACTSASLEPSYVLRAIGVDEDLAHSSI 392 (428)
T ss_pred HHHHHHHhhhCchhhccCCcccccccceeeecccccCcchhhhhhhhhhcccchhhcCCCCcchhhhhcCcchhhhccee
Confidence 666555533 111 11111 1111222333331100 0 00000000122344556666444445789
Q ss_pred EEeCCcccCHHHHHHHHHhhhccc
Q psy8199 622 YLMPPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 622 R~~p~~~~t~~~i~~~~~~l~~~~ 645 (965)
||+.....++++++.+.+.+.+..
T Consensus 393 Ris~G~y~t~~di~~~~~~i~~~v 416 (428)
T KOG1549|consen 393 RISIGRYTTEEDIDYLVDAIKKLV 416 (428)
T ss_pred EEeeeeeCcHHHHHHHHHHHHHHH
Confidence 999999999999999998876543
|
|
| >PRK00451 glycine dehydrogenase subunit 1; Validated | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.7e-12 Score=148.75 Aligned_cols=286 Identities=15% Similarity=0.112 Sum_probs=169.4
Q ss_pred HHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhccc
Q psy8199 300 IKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSL 379 (965)
Q Consensus 300 ~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~ 379 (965)
.++.+.++++++.+.+++.+++||+++++.++...+. .++++|++.++.|+.+ ..++.... ...
T Consensus 115 ~e~~~~la~l~g~~~~~v~~~~g~t~~~~~~~~a~~~-------~~g~~Vlv~~~~~~~~-~~~~~~~~--------~~~ 178 (447)
T PRK00451 115 FEYQTMICELTGMDVANASMYDGATALAEAALMAVRI-------TKRKKVLVSGAVHPEY-REVLKTYL--------KGQ 178 (447)
T ss_pred HHHHHHHHHHhCCCcceEEecCcHHHHHHHHHHHHHh-------cCCCEEEEeCccCHHH-HHHHHHHH--------HhC
Confidence 4444677899887777899999999988877764432 2567788877655333 22211100 001
Q ss_pred CCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeE
Q psy8199 380 LNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHL 459 (965)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~ll 459 (965)
...+..+|.... . .|+++|++++. +++++|++.. + +++|.+.+ +++|.++|+++|+++
T Consensus 179 G~~~~~v~~~~~--~-----------~d~~~l~~~i~---~~t~~v~l~~-p-n~tG~v~~----l~~I~~~a~~~~~~~ 236 (447)
T PRK00451 179 GIEVVEVPYEDG--V-----------TDLEALEAAVD---DDTAAVVVQY-P-NFFGVIED----LEEIAEIAHAGGALF 236 (447)
T ss_pred CcEEEEecCCCC--C-----------CCHHHHHHhcC---CCeEEEEEEC-C-CCCCeeCC----HHHHHHHHHHCCCEE
Confidence 123344444321 1 36888888874 4577888877 5 77898876 999999999999999
Q ss_pred EE--eccccCCCcccccccccccCCCcceeee-----ccccCCCcccceeeeecHHHHHhhhcc---------CC-----
Q psy8199 460 IA--DEIAVGCGRTGKFFACEHAEIWPDFLCL-----SKGITGGYLPLSLVMTTDKIYNSIYYK---------NN----- 518 (965)
Q Consensus 460 I~--DEv~tg~gr~G~~~~~~~~~~~pDivt~-----sK~l~gG~~pig~v~~~~~i~~~~~~~---------~~----- 518 (965)
|+ |.+..|+ .. ... ....|++++ ||.+..|++.+|++.+++++++.+... +.
T Consensus 237 iv~~d~~~~g~--~~---~~~--~~~~D~~~~s~~k~~~~~~~~Gpg~G~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 309 (447)
T PRK00451 237 IVGVDPVSLGL--LK---PPG--EYGADIVVGEGQPLGIPLSFGGPYLGFFATRKKLVRQMPGRLVGETVDADGKRGFVL 309 (447)
T ss_pred EEEcChHHhcc--CC---Ccc--cCCCCEEEECCCcCCCCCCCCCCCchHHHhhHHHHhhCCCCEeeeecccCCCeeeEe
Confidence 98 6553221 11 111 234677754 554332226889998999888764210 00
Q ss_pred -------cccccccC-CCCCCHHHH-HHHHHHHHHHhc---ccHHHHHHHHHHHHHHHHHcccCCCceeeeeceeEEEE-
Q psy8199 519 -------INIFLHSH-SYSGNPLAC-CAALATLEIFNK---DNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWA- 585 (965)
Q Consensus 519 -------~~~~~~~~-t~~~~~~~~-aaa~a~L~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~G~~~~- 585 (965)
...+.++. +++.+...+ .++.++|+.+.+ +...++..++.+++.++|+++ +++... .|.++.
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~aaa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~---~g~~~~--~~~~~~~ 384 (447)
T PRK00451 310 TLQAREQHIRREKATSNICTNQALNALAAAIYMSLLGPEGLRELAEQNHQKAHYLAERLAEI---GGVELF--DGPFFNE 384 (447)
T ss_pred eccccccccccccccccccccHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHhhc---CCEEec--CCCeEEE
Confidence 00011111 122222222 333334554433 335667777777888877654 444333 222222
Q ss_pred --EEEeecCccchhhHHHHHHHHHHHcCcEEe----ec----CCEEEEeCCcccCHHHHHHHHHhhhc
Q psy8199 586 --FDVIIEDPEQIETFSKKFFVAALKNELLLR----PI----GNTVYLMPPYILNKNEIQHMTSAIFQ 643 (965)
Q Consensus 586 --i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~----~~----~~~lR~~p~~~~t~~~i~~~~~~l~~ 643 (965)
+.+. . ...++.++|.++|+... +. .+.+|++++...++++++++++.+.+
T Consensus 385 ~~v~~~-------~-~~~~~~~~L~~~gi~~~~~~~~~~~~~~~~~rvs~~~~~t~e~i~~l~~~L~~ 444 (447)
T PRK00451 385 FVVRLP-------K-PAEEVNEALLEKGILGGYDLGRYYPELGNHLLVCVTEKRTKEDIDALVAALGE 444 (447)
T ss_pred EEEecC-------C-CHHHHHHHHHhcCCCCCcccccccCCcCCEEEEecCCCCCHHHHHHHHHHHHH
Confidence 2221 0 13468888999987642 21 25899999988999999999998864
|
|
| >PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=8.8e-12 Score=140.54 Aligned_cols=283 Identities=16% Similarity=0.131 Sum_probs=166.0
Q ss_pred HHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEE
Q psy8199 273 SYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICL 352 (965)
Q Consensus 273 p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~ 352 (965)
++-.+++.+.+..... +..+...++.++++++++ .+.+++++||++|+.+|++.... .++++||+.
T Consensus 14 ~~e~~~~~~~l~~~~~-----~~g~~~~~le~~la~~~g--~~~~v~~~sgt~al~lal~al~~-------~~Gd~Viv~ 79 (379)
T PRK11658 14 DEELAAVKEVLRSGWI-----TTGPKNQALEQAFCQLTG--NQHAIAVSSATAGMHITLMALGI-------GPGDEVITP 79 (379)
T ss_pred HHHHHHHHHHHHcCCc-----cCCHhHHHHHHHHHHHhC--CCeEEEECCHHHHHHHHHHHcCC-------CCCCEEEEC
Confidence 5557778777765311 234668899999999985 46789999999999999986511 356889999
Q ss_pred cCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccc
Q psy8199 353 QNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQ 432 (965)
Q Consensus 353 ~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~ 432 (965)
+++|.+........+ ..+++++....... .|++++++++. +++.+|+ | .
T Consensus 80 ~~~~~~~~~~~~~~G-------------~~~v~vd~~~~~~~-----------~d~~~l~~~i~---~~tkav~--~--~ 128 (379)
T PRK11658 80 SLTWVSTLNMIVLLG-------------ATPVMVDVDRDTLM-----------VTPEAIEAAIT---PRTKAII--P--V 128 (379)
T ss_pred CCcHHHHHHHHHHcC-------------CEEEEEecCCCcCC-----------cCHHHHHHhcc---cCCeEEE--E--e
Confidence 988877632222211 13344443211111 26788888885 3455665 3 2
Q ss_pred cCCCcccCChHHHHHHHHHHHhcCCeEEEecccc-CCCcccccccccccCCCcceeeec--cccCCCcccceeeeec-HH
Q psy8199 433 CAGGMIMYDSIYLKLVREICNNYNIHLIADEIAV-GCGRTGKFFACEHAEIWPDFLCLS--KGITGGYLPLSLVMTT-DK 508 (965)
Q Consensus 433 ~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-g~gr~G~~~~~~~~~~~pDivt~s--K~l~gG~~pig~v~~~-~~ 508 (965)
+..|...+ +++|.++|++||+++|.|++|+ |.-..|.. ...+|. ++.+|+ |.|++| ..|+++.+ ++
T Consensus 129 ~~~G~~~d----~~~i~~~a~~~gi~vi~D~a~a~g~~~~~~~--~g~~g~--~~~Sf~~~K~l~~g--~GG~v~~~~~~ 198 (379)
T PRK11658 129 HYAGAPAD----LDAIRAIGERYGIPVIEDAAHAVGTYYKGRH--IGARGT--AIFSFHAIKNITCA--EGGLVVTDDDE 198 (379)
T ss_pred CCCCCcCC----HHHHHHHHHHcCCeEEEECCCccCCeECCee--cCCCCC--EEEeCCCCCcCccc--CceEEEECCHH
Confidence 34677665 8899999999999999999997 22122221 122343 667775 678775 56777764 66
Q ss_pred HHHhhhc---cCCc-cc--------------ccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcccC
Q psy8199 509 IYNSIYY---KNNI-NI--------------FLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLIT 570 (965)
Q Consensus 509 i~~~~~~---~~~~-~~--------------~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~~ 570 (965)
+++.+.. .+.. .. +..|..+..+.+.+|.++.-|+.++ +..++-+++.+++.+.|.++.-
T Consensus 199 ~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~G~n~~~~~l~AAl~~~ql~~l~--~~~~~r~~~a~~~~~~L~~~~~ 276 (379)
T PRK11658 199 LADRLRSLKFHGLGVDAFDRQTQGRAPQAEVLTPGYKYNLADINAAIALVQLAKLE--ALNARRREIAARYLQALADLPF 276 (379)
T ss_pred HHHHHHHHHHcCCCcchhhhhcccCCCcceeeccccccCcCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhcCCCC
Confidence 6655432 1100 00 0112334445566666666665543 3567777788888888876521
Q ss_pred CCc-eeeeeceeE--EEEEEEeecCccchhhHHHHHHHHHHHcCcEEe
Q psy8199 571 HPK-IINFRQKGM--IWAFDVIIEDPEQIETFSKKFFVAALKNELLLR 615 (965)
Q Consensus 571 ~~~-i~~v~g~G~--~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~ 615 (965)
... ......... ++.+.+. .. ......+.+.+.|.++||.++
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~r~~~~~~L~~~gI~~~ 321 (379)
T PRK11658 277 QPLSLPAWPHQHAWHLFIIRVD-EE--RCGISRDALMEALKERGIGTG 321 (379)
T ss_pred ccCcCCCCCCceeEEEEEEEEC-Cc--cccCCHHHHHHHHHHCCCCCc
Confidence 100 001011112 2333332 11 001124568888999998654
|
|
| >TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.7e-12 Score=137.90 Aligned_cols=210 Identities=14% Similarity=0.186 Sum_probs=147.5
Q ss_pred HHHHHHHhcCC-CeEEEeEeEeeccCCCCCCCCCCCCCCcCCCCcccccCCCHHHHHHHHHHHHHCCCCEEEEeeccCCC
Q psy8199 666 AQKVHRKYFDA-NEIELAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWREL 744 (965)
Q Consensus 666 a~~~~~~~~~g-~~~~~~~~i~~~s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~ 744 (965)
++-+-+++..+ +.+.+...+++ |+.|+.+|.||....... .. ....++.|++++.+. +.|+..|.|.|| +|+
T Consensus 12 ~~~~~~~~~~~~~~~Pl~l~le~-T~~CNL~C~~C~~~~~~~-~~-~~~~ls~ee~~~~i~---e~g~~~V~i~GG-EPL 84 (318)
T TIGR03470 12 GAYIIKQKLNGRKRFPLVLMLEP-LFRCNLACAGCGKIQYPA-EI-LKQRLSVEECLRAVD---ECGAPVVSIPGG-EPL 84 (318)
T ss_pred HHHHHHHHHhcCCCCCCEEEEec-ccccCcCCcCCCCCcCCC-cc-cccCCCHHHHHHHHH---HcCCCEEEEeCc-ccc
Confidence 34343444323 33455666777 999999999998654221 11 123489999987765 468888888775 576
Q ss_pred CcccHHHHHHHHHHHHhcCcEeEE-ecCCCCHHHHHHHHHhCCCeEeccCCCCHHHHhccc-CCCCHHHHHHHHHHHHHc
Q psy8199 745 KDRDLDNIENMICEVKKIGLETCL-TLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDII-STRDYENRLNTLKNVRNV 822 (965)
Q Consensus 745 ~~~~~~~~~~~~~~i~~~~~~i~~-~~~~~~~e~l~~Lk~aG~~~i~i~~es~~~~~~~i~-~~~~~~~~~~~i~~~~~~ 822 (965)
...+ +.++++.+++.+..+.+ ++|.+-.+.+..++++|...+.+++++.++.+..+. ...+++..+++++.+++.
T Consensus 85 L~pd---l~eiv~~~~~~g~~v~l~TNG~ll~~~~~~l~~~~~~~i~VSLDG~~e~hd~~~~~~g~f~~~l~~I~~l~~~ 161 (318)
T TIGR03470 85 LHPE---IDEIVRGLVARKKFVYLCTNALLLEKKLDKFEPSPYLTFSVHLDGLREHHDASVCREGVFDRAVEAIREAKAR 161 (318)
T ss_pred cccc---HHHHHHHHHHcCCeEEEecCceehHHHHHHHHhCCCcEEEEEEecCchhhchhhcCCCcHHHHHHHHHHHHHC
Confidence 6644 45566666654544333 445555667899999999999999999667777764 457899999999999999
Q ss_pred CCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCCCCCCCHHHHHHHHHH
Q psy8199 823 GINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAV 888 (965)
Q Consensus 823 Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~~~~~~~~~~~~~ia~ 888 (965)
|+++...+.+-.+++.+++.+.++++.+++ ++.+.+.+.+|....+-.+ ...+.++..+++..
T Consensus 162 G~~v~v~~tv~~~~n~~ei~~~~~~~~~lG--v~~i~i~p~~~~~~a~~~~-~~l~~~e~~~~~~~ 224 (318)
T TIGR03470 162 GFRVTTNTTLFNDTDPEEVAEFFDYLTDLG--VDGMTISPGYAYEKAPDQD-HFLGRRQTKKLFRE 224 (318)
T ss_pred CCcEEEEEEEeCCCCHHHHHHHHHHHHHcC--CCEEEEecCcccccccccc-cccCHHHHHHHHHH
Confidence 998887666534789999999999999999 8888888777765444322 23456665555444
|
The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH |
| >PRK08045 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.6e-12 Score=143.01 Aligned_cols=241 Identities=11% Similarity=0.130 Sum_probs=158.1
Q ss_pred cCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCc
Q psy8199 291 LSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQ 370 (965)
Q Consensus 291 ~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~ 370 (965)
.++++++...+|+++|+++.+ .+.+++++||++|+..++.... .++++|++.++.|++..........
T Consensus 46 Y~R~~~pt~~~L~~~lA~l~g--~~~~i~~~sg~~Ai~~~l~~l~--------~~GD~Vl~~~~~y~~~~~~~~~~~~-- 113 (386)
T PRK08045 46 YSRRGNPTRDVVQRALAELEG--GAGAVLTNTGMSAIHLVTTVFL--------KPGDLLVAPHDCYGGSYRLFDSLAK-- 113 (386)
T ss_pred eeCCCCccHHHHHHHHHHHhC--CCeEEEECCHHHHHHHHHHHHc--------CCCCEEEEcCCCcHHHHHHHHHHHh--
Confidence 456788889999999999986 3579999999999999988653 3668899999999764211111000
Q ss_pred CccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHH
Q psy8199 371 SFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVRE 450 (965)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~ 450 (965)
.....+.+++. .|++++++++. +++.+|++|. ++|++|.+.+ +++|.+
T Consensus 114 -------~~gi~v~~vd~-----------------~d~e~l~~~l~---~~tklV~l~s-P~NPtG~v~d----i~~I~~ 161 (386)
T PRK08045 114 -------RGCYRVLFVDQ-----------------GDEQALRAALA---EKPKLVLVES-PSNPLLRVVD----IAKICH 161 (386)
T ss_pred -------hCCeEEEEeCC-----------------CCHHHHHHhcc---cCCeEEEEEC-CCCCCCEecC----HHHHHH
Confidence 00001222211 25677888775 3467778887 7999998887 889999
Q ss_pred HHHhcCCeEEEeccccCCCcccccccccccCCCccee--eeccccCCC-cccceeeee-cHHHHHhhhccCCcccccccC
Q psy8199 451 ICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL--CLSKGITGG-YLPLSLVMT-TDKIYNSIYYKNNINIFLHSH 526 (965)
Q Consensus 451 l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDiv--t~sK~l~gG-~~pig~v~~-~~~i~~~~~~~~~~~~~~~~~ 526 (965)
+|+++|+++|+||+|.... . ........|++ +++|.++|. -...|++++ ++++.+.+.. .....
T Consensus 162 ia~~~g~~vivDeay~~~~-~-----~~pl~~gaDivv~S~tK~l~G~~d~~~G~vi~~~~~~~~~l~~------~~~~~ 229 (386)
T PRK08045 162 LAREAGAVSVVDNTFLSPA-L-----QNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAW------WANNI 229 (386)
T ss_pred HHHHcCCEEEEECCCCccc-c-----CCchhhCCCEEEeecceeccCCCCceeEEEEeCcHHHHHHHHH------HHHhc
Confidence 9999999999999986431 1 11123345776 478988752 134677766 4667665543 11223
Q ss_pred CCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHccc-----CCCceee----------eeceeEEEEEEEe
Q psy8199 527 SYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLI-----THPKIIN----------FRQKGMIWAFDVI 589 (965)
Q Consensus 527 t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~-----~~~~i~~----------v~g~G~~~~i~~~ 589 (965)
+...+|+.+..++..|+.+.. -.++..++...+.+.|++-. .+|++.. ..|.|.|++|++.
T Consensus 230 g~~~~p~~~~l~~rgl~tl~~--R~~~~~~na~~la~~L~~~p~v~~V~yp~l~~~p~~~~~~~~~~g~g~~~s~~~~ 305 (386)
T PRK08045 230 GVTGGAFDSYLLLRGLRTLVP--RMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELD 305 (386)
T ss_pred CCCCCHHHHHHHHhhhccHHH--HHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEec
Confidence 445788888888888876542 24566666777777776431 1333221 2467889999985
|
|
| >PTZ00094 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.4e-11 Score=142.04 Aligned_cols=344 Identities=14% Similarity=0.048 Sum_probs=193.8
Q ss_pred cccccccccchhccCCCCCHHHHHHHHHHHhhc---cccc-cCCCCc---HHHHH-HHHHHHhhcCCCCCeEEEc---CC
Q psy8199 254 KRYLDAISSWWVNLFGHSNSYINKALKNQLNKL---EHVM-LSNLTH---KPVIK-LSEKLSSLTQYKLGHCFYG---SD 322 (965)
Q Consensus 254 ~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~---~~~~-~~~~~~---~~~~~-la~~l~~~~~~~~~~v~~~---~s 322 (965)
++.|.++++-. ...|.+.+++...+.+. +..+ ...... +..++ ..++++++++...+.+.|+ +|
T Consensus 34 ~~~l~l~~sen-----~~s~~v~~~~~~~l~~~y~~g~p~s~~~~g~~~~~~iE~~ar~~~a~lf~a~~~~~~~~~~~~s 108 (452)
T PTZ00094 34 IEGLELIASEN-----FTSRAVLECLGSCFTNKYAEGLPGNRYYGGNEVVDKIENLCQKRALEAFGLDPEEWGVNVQPYS 108 (452)
T ss_pred HcCeeEecccc-----cCCHHHHHHhcchhhccccCCCCCccccccchHHHHHHHHHHHHHHHHhCCCcccceeecCCCc
Confidence 45677665522 24799999998877542 1110 001111 22232 3346778887666666676 79
Q ss_pred hhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhH
Q psy8199 323 GASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANE 402 (965)
Q Consensus 323 GseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (965)
|++||..++....+ ++++|++. ..-||............ ....... .....+++....
T Consensus 109 gt~an~~v~~al~~--------~gd~Ii~~-~~ehg~~l~~~~~l~~~--~~~~~~~--~~~~~~~~~~~~--------- 166 (452)
T PTZ00094 109 GSPANFAVYTALLQ--------PHDRIMGL-DLPSGGHLTHGFYTAKK--KVSATSI--YFESLPYQVNEK--------- 166 (452)
T ss_pred hHHHHHHHHHHhcC--------CCCEEEec-ccccCCccccccccccc--cccccee--eeeeeecccCCC---------
Confidence 99999998887632 45677765 44566543321100000 0000000 011111111100
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccccc-ccccccC
Q psy8199 403 IARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKF-FACEHAE 481 (965)
Q Consensus 403 ~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~-~~~~~~~ 481 (965)
...|+++|++++++...+ .|++. .+..|...| +++|.++|+++|+++++|++|+ +|..+.. +.....
T Consensus 167 -g~id~~~L~~~l~~~~~~--lvi~~---~s~~g~~~d----i~~I~~i~~~~ga~l~vDaaq~-~G~i~~~~~~~~~~- 234 (452)
T PTZ00094 167 -GLIDYDKLEELAKAFRPK--LIIAG---ASAYPRDID----YKRFREICDSVGAYLMADIAHT-SGLVAAGVLPSPFP- 234 (452)
T ss_pred -CCcCHHHHHHHHHHhCCC--EEEEe---CCCCCCccC----HHHHHHHHHHcCCEEEEeccch-hccccCCCCCCCCC-
Confidence 115789999998653333 33341 345777887 9999999999999999999996 6665421 111111
Q ss_pred CCcceeeec--cccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcc---cHHHHHHH
Q psy8199 482 IWPDFLCLS--KGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKD---NILQRISQ 556 (965)
Q Consensus 482 ~~pDivt~s--K~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~---~~~~~~~~ 556 (965)
..|++++| |++.|. .-|++++++++.+.+...-. ........-+.++.++++..++|+.+... ...+++.+
T Consensus 235 -~~D~l~~S~hK~l~GP--~Gg~l~~~~~~~~~l~~~~~-~~~~p~~~G~~~~~~iaal~~al~~~~~~~~~~~~~~i~~ 310 (452)
T PTZ00094 235 -YADVVTTTTHKSLRGP--RSGLIFYRKKVKPDIENKIN-EAVFPGLQGGPHNHQIAAIAVQLKEVQSPEWKEYAKQVLK 310 (452)
T ss_pred -CCcEEEcCCccCCCCC--CceEEEEecccchHHHHhhc-cccCCCCCCCchHHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence 47888765 888773 23566667655443322000 00110111134667888888889887542 46788888
Q ss_pred HHHHHHHHHHcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEee----c------CCEEEEeCC
Q psy8199 557 DMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRP----I------GNTVYLMPP 626 (965)
Q Consensus 557 ~~~~l~~~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~----~------~~~lR~~p~ 626 (965)
+.++|.+.|.+. ..+.+..- ....+..+.+. .. ......+...|.++||++.. . .+.+|++|+
T Consensus 311 l~~~l~~~L~~~-g~~v~~~~-~~~~~~~v~~~-~~----~~~~~~~~~~L~~~gI~vs~~~~p~~~~~~~~~~vRis~~ 383 (452)
T PTZ00094 311 NAKALAAALEKR-GYDLVTGG-TDNHLVLVDLR-PF----GITGSKMEKLLDAVNISVNKNTIPGDKSALNPSGVRLGTP 383 (452)
T ss_pred HHHHHHHHHHhC-CcEEecCC-CCCceEeecCC-cC----CCCHHHHHHHHHHCCcEEecccCCCCCcCCCCCeEEECCH
Confidence 999999988663 11111100 11123333332 11 11133566777778999842 1 268999997
Q ss_pred cccC----HHHHHHHHHhhhccccc
Q psy8199 627 YILN----KNEIQHMTSAIFQTFNE 647 (965)
Q Consensus 627 ~~~t----~~~i~~~~~~l~~~~~~ 647 (965)
...+ +++++++++.+.+.+..
T Consensus 384 ~~tt~g~~~~di~~l~~~l~~~~~~ 408 (452)
T PTZ00094 384 ALTTRGAKEKDFKFVADFLDRAVKL 408 (452)
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 7765 99999999988776543
|
|
| >PRK04366 glycine dehydrogenase subunit 2; Validated | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.3e-11 Score=143.05 Aligned_cols=334 Identities=14% Similarity=0.118 Sum_probs=190.8
Q ss_pred CCCHHHHHHHHHHHh--hcccc---ccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCC
Q psy8199 270 HSNSYINKALKNQLN--KLEHV---MLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFL 344 (965)
Q Consensus 270 h~~p~v~~av~~~~~--~~~~~---~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~ 344 (965)
|.+|.+++++.+... ..+.| ..+.+..+...++.+.++++++.+ ...++.++|+.+...++.+++.+...+|..
T Consensus 81 ~~~p~i~~~~~~~~~~~~~tpYq~e~~sqG~lel~~~~~~~la~l~G~~-~~~l~~~~GA~a~~~~l~~~r~~~~~~Gd~ 159 (481)
T PRK04366 81 KYNPKINEKVARLPGFAELHPLQPEETVQGALELMYELQEWLKEITGMD-AVTLQPAAGAHGELTGLLMIRAYHEARGDT 159 (481)
T ss_pred CCCHHHHHHHHhCcchhcCCCCCChhhhhHHHHHHHHHHHHHHHHhCCC-ceEEEeCcHHHHHHHHHHHHHHHhhccCcC
Confidence 457888888876522 22222 112234455678888899998643 234455677777766665555443334433
Q ss_pred CceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEE
Q psy8199 345 NKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAA 424 (965)
Q Consensus 345 ~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aa 424 (965)
++++|++.++.|+.+. .+.... ...++.+|.... +. .|+++|++++. +++++
T Consensus 160 ~~~~Vlv~~~~hp~~~-~~~~~~------------G~~vv~v~~~~~-~~-----------~D~e~L~~~i~---~~t~~ 211 (481)
T PRK04366 160 KRTEVIVPDSAHGTNP-ASAAMA------------GFKVVEIPSNED-GL-----------VDLEALKAAVG---EDTAA 211 (481)
T ss_pred CCCEEEEcCCccHhHH-HHHHHc------------CCEEEEeecCCC-CC-----------cCHHHHHhhcc---cCCeE
Confidence 5668888887665543 222111 123444444211 11 37888888875 34455
Q ss_pred EEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcceeeec--cccC----CCcc
Q psy8199 425 IIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS--KGIT----GGYL 498 (965)
Q Consensus 425 ii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~s--K~l~----gG~~ 498 (965)
|++.. ++ ++|.+ ...+++|.++|+++|+++|+|+++. .+-.|.. ....+ ..|+++++ |.++ .|+-
T Consensus 212 V~v~~-Pn-~tG~~---~~dl~eI~~~a~~~gal~iVD~a~~-~~~~g~~-~~~~~--GaD~~~~~~hK~l~~P~g~Ggp 282 (481)
T PRK04366 212 LMLTN-PN-TLGLF---ERNILEIAEIVHEAGGLLYYDGANL-NAILGKA-RPGDM--GFDVVHLNLHKTFSTPHGGGGP 282 (481)
T ss_pred EEEeC-CC-Ccccc---chHHHHHHHHHHHcCCEEEEEecCh-hhhcccC-Ccccc--CCCEEEEechhhcCCCCCCCCC
Confidence 54433 24 77754 1238999999999999999999985 3223321 12223 36888763 7665 2323
Q ss_pred cceeeeecHHHHHhhhcc--C-Cccccc----------ccCCCCCCHHHHHHHHHHHHHHhcccH---HHHHHHHHHHHH
Q psy8199 499 PLSLVMTTDKIYNSIYYK--N-NINIFL----------HSHSYSGNPLACCAALATLEIFNKDNI---LQRISQDMKKIT 562 (965)
Q Consensus 499 pig~v~~~~~i~~~~~~~--~-~~~~~~----------~~~t~~~~~~~~aaa~a~L~~~~~~~~---~~~~~~~~~~l~ 562 (965)
.+|++.+++++.+.+... + ....+. ..-.++++.+.+.++...+..+..+++ .++...+.++|.
T Consensus 283 ~~G~l~~~~~~~~~lp~~~v~~~g~~~~l~~~r~~~i~r~~a~t~~~l~~~~a~~~l~~~G~~Gl~~~a~~~~~~a~~l~ 362 (481)
T PRK04366 283 GSGPVGVKEELAPFLPVPVVEKDGDRYRLDYDRPKSIGRVRAFYGNFGVLVRAYAYIRSLGAEGLREVSEDAVLNANYLK 362 (481)
T ss_pred CeeeeeehhhhHhhCCCCeeeccCCceeecccccccCCCcccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777888777665310 0 000000 111223445555666666666554533 355566788999
Q ss_pred HHHHcccCCCceeeeecee-EEEEEEEeecCccchhhHHHHHHHHHHHcCcEEe----e--cCCEEEEeCCcccCHHHHH
Q psy8199 563 KALTSLITHPKIINFRQKG-MIWAFDVIIEDPEQIETFSKKFFVAALKNELLLR----P--IGNTVYLMPPYILNKNEIQ 635 (965)
Q Consensus 563 ~~L~~l~~~~~i~~v~g~G-~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~----~--~~~~lR~~p~~~~t~~~i~ 635 (965)
++|+++...+ . .+.. ..+.+.+. .-.........+.++|.++|+... | ..+.+|++|....|.++||
T Consensus 363 ~~L~~~~~~~---~-~~~~~~~~~~~~~--~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~~~l~is~~e~~t~edid 436 (481)
T PRK04366 363 ARLKDIYDLP---Y-DRPCMHEFVLSGK--KLKETGVRTLDIAKRLLDYGFHPPTIYFPLIVPEALMIEPTETESKETLD 436 (481)
T ss_pred HHhHhhCccc---C-CCCeeEEEEEECc--cccccCCCHHHHHHHHHHCCccCCccccccccCCeEEEcccCCCCHHHHH
Confidence 9998761111 1 1100 11222210 000001124568899999999865 1 1468999999999999999
Q ss_pred HHHHhhhccccc
Q psy8199 636 HMTSAIFQTFNE 647 (965)
Q Consensus 636 ~~~~~l~~~~~~ 647 (965)
.+++.+.+...+
T Consensus 437 ~l~~~l~~i~~~ 448 (481)
T PRK04366 437 AFIAAMKQIAEE 448 (481)
T ss_pred HHHHHHHHHHHH
Confidence 999998766543
|
|
| >TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.7e-11 Score=137.40 Aligned_cols=282 Identities=13% Similarity=0.063 Sum_probs=172.1
Q ss_pred HHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEE
Q psy8199 273 SYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICL 352 (965)
Q Consensus 273 p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~ 352 (965)
++..+++.+.+..... .+..+...++++.+++.+ +.+++++++||++|+..+++.+. ..++++||+.
T Consensus 11 ~~e~~a~~~~~~~~~~----~~~g~~~~~~e~~la~~~--g~~~~v~~~sgt~aL~~~l~al~-------~~pGd~Viv~ 77 (376)
T TIGR02379 11 GQELEYIAEAISEGKL----SGDGPFSRRCETWLENRT--GTKKALLTPSCTAALEMAALLLD-------IQPGDEVIMP 77 (376)
T ss_pred HHHHHHHHHHHHcCCc----cCCcHHHHHHHHHHHHHh--CCCeEEEeCCHHHHHHHHHHHcC-------CCCcCEEEEC
Confidence 5557788887765321 123567889999999987 56899999999999998887541 1367889999
Q ss_pred cCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccc
Q psy8199 353 QNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQ 432 (965)
Q Consensus 353 ~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~ 432 (965)
..+|.+........+ ..+++++....... .|++++++++. +++.+|+ | .
T Consensus 78 ~~t~~~~~~~~~~~G-------------~~~v~vd~d~~~~~-----------~d~~~le~~i~---~~tk~Ii--p--~ 126 (376)
T TIGR02379 78 SYTFVSTANAFVLRG-------------AKIVFVDIRPDTMN-----------IDETLIESAIT---HRTKAIV--P--V 126 (376)
T ss_pred CCCcHHHHHHHHHcC-------------CEEEEEecCCCcCC-----------CCHHHHHHhcC---cCceEEE--E--e
Confidence 998877533222221 13344443321111 26788888875 3455664 4 3
Q ss_pred cCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcceeeec----cccCCCcccceeeeec-H
Q psy8199 433 CAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS----KGITGGYLPLSLVMTT-D 507 (965)
Q Consensus 433 ~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~s----K~l~gG~~pig~v~~~-~ 507 (965)
+.+|...+ +++|.++|++||+++|.|++|+ +|.. +.-...|..-|+.+|| |.++.| ...|+++.+ +
T Consensus 127 ~~~G~~~d----~~~I~~la~~~~i~vIeDaa~~-~g~~---~~~~~~g~~~~~~~fSf~~~K~l~~g-~~gG~v~~~~~ 197 (376)
T TIGR02379 127 HYAGVACD----MDTIMALANKHQLFVIEDAAQG-VMST---YKGRALGSIGHLGTFSFHETKNYTSG-GEGGALLINDQ 197 (376)
T ss_pred CCCCCccC----HHHHHHHHHHCCCEEEEECccc-cCCc---cCCcccCCCCCEEEEeCCCCCcCccc-CCceEEEECCH
Confidence 45677665 8899999999999999999997 4321 1111223334788888 988766 367877765 6
Q ss_pred HHHHhhhc---cCCcc-c-----------ccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcccC--
Q psy8199 508 KIYNSIYY---KNNIN-I-----------FLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLIT-- 570 (965)
Q Consensus 508 ~i~~~~~~---~~~~~-~-----------~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~~-- 570 (965)
++++.+.. .+... . ...+..+..+.+.++.+++.|+.+.+ ..++-++..++..+.|..+..
T Consensus 198 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~n~~~~~~~Aa~g~~qL~~l~~--~~~~r~~~~~~y~~~L~~~~~~~ 275 (376)
T TIGR02379 198 AFIERAEIIREKGTNRSQFFRGEVDKYTWRDIGSSYLPSELQAAYLWAQLEQADR--INQDRLATWQLYQDALKPLEEKG 275 (376)
T ss_pred HHHHHHHHHHHhCCCCccccccCCCcceeeeecccCCccHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHHhccCCcCC
Confidence 77766543 11100 0 01234445566777777777876643 456666667777777765421
Q ss_pred ---CCcee-eeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEe
Q psy8199 571 ---HPKII-NFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLR 615 (965)
Q Consensus 571 ---~~~i~-~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~ 615 (965)
.|.+. .....-.++.+.+. .. ...+++.+.|.++||..+
T Consensus 276 ~~~~~~~~~~~~~~~~~~~i~~~--~~----~~r~~l~~~L~~~gI~~~ 318 (376)
T TIGR02379 276 IIELPSIPNGCQHNAHMFYIKLK--DE----DDRNELIKYLKEQEIMAV 318 (376)
T ss_pred eeeCCCCCCCCeeeeEEEEEEEC--Cc----CCHHHHHHHHHHCCCCcc
Confidence 11111 11111112333332 11 124578889999999765
|
This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041). |
| >PRK08861 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=2e-12 Score=144.42 Aligned_cols=241 Identities=13% Similarity=0.112 Sum_probs=153.8
Q ss_pred cCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCc
Q psy8199 291 LSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQ 370 (965)
Q Consensus 291 ~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~ 370 (965)
++++.++....|+++++++.+ .+.+++++||++|+..++.... .++++|++.++.|.+.... ..
T Consensus 47 Y~R~~npt~~~Le~~lA~leg--~e~ivvt~gg~~Ai~~~l~all--------~~Gd~Il~~~~~y~~~~~~-~~----- 110 (388)
T PRK08861 47 YTRSGNPNRGLLEQTLSELES--GKGAVVTNCGTSALNLWVSALL--------GPDDLIVAPHDCYGGTYRL-FN----- 110 (388)
T ss_pred ccCCCCchHHHHHHHHHHHhC--CCeEEEECCHHHHHHHHHHHHc--------CCCCEEEEcCCchHHHHHH-HH-----
Confidence 456788889999999999985 6899999999999999997663 2568899988888653110 00
Q ss_pred CccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHH
Q psy8199 371 SFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVRE 450 (965)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~ 450 (965)
.........+.+++. .|++++++++. +++.+|++|. ++|++|.+.+ +++|.+
T Consensus 111 ---~~~~~~gi~v~~vd~-----------------~d~e~l~~~i~---~~tklV~les-P~NPtG~v~d----l~~I~~ 162 (388)
T PRK08861 111 ---TRANKGDFKVQFVDQ-----------------SDAAALDAALA---KKPKLILLET-PSNPLVRVVD----IAELCQ 162 (388)
T ss_pred ---HHHhcCCeEEEEECC-----------------CCHHHHHHhcC---cCCeEEEEEC-CCCCCCcccC----HHHHHH
Confidence 000000112223221 25678887774 3567888887 7999999887 889999
Q ss_pred HHHhcCCeEEEeccccCCCcccccccccccCCCcceee--eccccCCC-cccceeeeec-HHHHHhhhccCCcccccccC
Q psy8199 451 ICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLC--LSKGITGG-YLPLSLVMTT-DKIYNSIYYKNNINIFLHSH 526 (965)
Q Consensus 451 l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt--~sK~l~gG-~~pig~v~~~-~~i~~~~~~~~~~~~~~~~~ 526 (965)
+|+++|+++|+||+|... .. ..-.....|+++ ++|.++|. -...|+++++ +++++.+.. .....
T Consensus 163 la~~~gi~vIvDea~~~~-~~-----~~pl~~GaDivv~S~tK~l~G~~d~~gG~i~~~~~~~~~~~~~------~~~~~ 230 (388)
T PRK08861 163 KAKAVGALVAVDNTFLTP-VL-----QKPLELGADFVIHSTTKYINGHSDVIGGVLITKTKEHAEELAW------WGNCI 230 (388)
T ss_pred HHHHcCCEEEEECCcccc-cc-----CCCcccCCCEEEeecceeccCCCcceeEEEEecHHHHHHHHHH------HHhcc
Confidence 999999999999998621 11 111233478875 56888762 1335666664 556554432 11112
Q ss_pred CCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHccc-----CCCcee----------eeeceeEEEEEEEe
Q psy8199 527 SYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLI-----THPKII----------NFRQKGMIWAFDVI 589 (965)
Q Consensus 527 t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~-----~~~~i~----------~v~g~G~~~~i~~~ 589 (965)
....+|..+...+..|+.+.- -.++-.++...+.+.|++-. .+|++. ...|-|.++.|++.
T Consensus 231 G~~~~p~~a~l~~rgl~Tl~l--R~~~~~~~a~~~a~~L~~~p~v~~V~yP~l~~~p~~~~~~~~~~g~gg~~sf~~~ 306 (388)
T PRK08861 231 GATGTPFDSYMTLRGIRTLGA--RMRVHEESAQQILAYLQTQSLVGTIYHPSLPEHPGHEIAKKQQSGFGSMLSFEFA 306 (388)
T ss_pred CCCCChHHHHHHHhcCCCHHH--HHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCchHHHHHHhCCCCCceEEEEeC
Confidence 234567777776666654431 23444556666666665431 234322 13467889999985
|
|
| >PRK06460 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.8e-12 Score=141.98 Aligned_cols=240 Identities=15% Similarity=0.135 Sum_probs=149.4
Q ss_pred CCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcC
Q psy8199 292 SNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQS 371 (965)
Q Consensus 292 ~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~ 371 (965)
+...++...+|+++++++.+. +..+.++||++|+..++....+ ++++|++..+.|.+.-..
T Consensus 40 ~r~~~p~~~~L~~~lA~l~g~--~~~v~~~sG~~ai~~~l~al~~--------~Gd~Vl~~~~~~~~ty~~--------- 100 (376)
T PRK06460 40 SREANPTVLELTKKIVELENA--EMGVAFSSGMGAISTTALALLK--------PGNSVLVHRDMFGRSYRF--------- 100 (376)
T ss_pred eCCCCccHHHHHHHHHHHhCC--CcEEEeCCHHHHHHHHHHHHhC--------CCCEEEEecCCcCcHHHH---------
Confidence 456677888999999999863 3445558889999988876532 567888876655332100
Q ss_pred ccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHH
Q psy8199 372 FKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREI 451 (965)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l 451 (965)
+..........+..++.. +.+.+++++ .+++.+|++|. ++|++|.+.+ +++|.++
T Consensus 101 ~~~~~~~~G~~v~~~~~~-----------------~~~~l~~~~---~~~tklV~l~s-p~NPtG~v~d----~~~I~~l 155 (376)
T PRK06460 101 FTDYLKNWGVNVDASNPG-----------------SDNIIEKAK---SKRYDVVFVEN-ITNPLLRVVD----ITELSKV 155 (376)
T ss_pred HHHHHHhhCcEEEEECCC-----------------CHHHHHHhc---CCCceEEEEEC-CCCCCCcccC----HHHHHHH
Confidence 000000011122333221 122344433 23567788888 7999999887 7789999
Q ss_pred HHhcCCeEEEeccccCCCcccccccccccCCCccee--eeccccCCC-cccceeeeecHHHHHhhhccCCcccccccCCC
Q psy8199 452 CNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL--CLSKGITGG-YLPLSLVMTTDKIYNSIYYKNNINIFLHSHSY 528 (965)
Q Consensus 452 ~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDiv--t~sK~l~gG-~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~ 528 (965)
|++||+++|+||+|..+ ... .......|++ ++||.++|. ...+|++++++++++.+.. +....+.
T Consensus 156 a~~~g~~vivDea~~~~-~~~-----~~l~~~~divv~S~sK~l~G~~~~~~G~~~~~~~l~~~l~~------~~~~~g~ 223 (376)
T PRK06460 156 CKENGSILIVDATFSTP-INQ-----KPLELGADIVVHSASKFLAGHNDVIAGLAAGYGKLLNVIDQ------MRRTLGT 223 (376)
T ss_pred HHHcCCEEEEECCcCcc-ccC-----ChhhcCCCEEEeecceeccCCCCceEEEEecCHHHHHHHHH------HHHhcCC
Confidence 99999999999998632 111 1111235766 578988751 1357889999998887764 1112233
Q ss_pred CCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHccc-----CCCceee----------eeceeEEEEEEEe
Q psy8199 529 SGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLI-----THPKIIN----------FRQKGMIWAFDVI 589 (965)
Q Consensus 529 ~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~-----~~~~i~~----------v~g~G~~~~i~~~ 589 (965)
+.+|..+..++..++.++ ...+++.++.+++.+.|++.. .+|++.. ..|.|.|++|++.
T Consensus 224 ~~~~~~a~~~l~~~~~l~--~r~~~~~~n~~~l~~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~g~gg~~s~~~~ 297 (376)
T PRK06460 224 SLDPHAAYLTLRGIKTLK--IRMDVINRNAEQIAEFLEGHPKVVKVYYPGLKSHVDYEIARRVLKGFGGVLSFEVN 297 (376)
T ss_pred CCCHHHHHHHHhchhhHH--HHHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEc
Confidence 355666666656666554 346777888888888887542 1333221 2467899999985
|
|
| >PRK07810 O-succinylhomoserine sulfhydrylase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=4e-12 Score=143.52 Aligned_cols=240 Identities=15% Similarity=0.148 Sum_probs=157.0
Q ss_pred CCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcC
Q psy8199 292 SNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQS 371 (965)
Q Consensus 292 ~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~ 371 (965)
..+.++...+|+++++++.+ .+.+++++||+.|+..++.... .++++|++.+..|.+. .....
T Consensus 65 ~r~~~p~~~~le~~lA~l~g--~~~al~~~sG~~Ai~~~l~all--------~~Gd~Vl~~~~~~~~t-~~~~~------ 127 (403)
T PRK07810 65 SRYGNPTVSMFEERLRLIEG--AEACFATASGMSAVFTALGALL--------GAGDRLVAARSLFGSC-FVVCN------ 127 (403)
T ss_pred eCCCCchHHHHHHHHHHHhC--CCcEEEECChHHHHHHHHHHHh--------CCCCEEEEccCCcchH-HHHHH------
Confidence 56778889999999999985 5689999999999999887653 2567888776554332 21110
Q ss_pred ccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHH
Q psy8199 372 FKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREI 451 (965)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l 451 (965)
.........+.+++. .|++++++++. +++.+|++|. +.|++|.+.+ +++|.++
T Consensus 128 --~~~~~~G~~v~~vd~-----------------~d~~~l~~ai~---~~tklV~~es-p~Nptg~v~d----l~~I~~l 180 (403)
T PRK07810 128 --EILPRWGVETVFVDG-----------------EDLSQWEEALS---VPTQAVFFET-PSNPMQSLVD----IAAVSEL 180 (403)
T ss_pred --HHHHHcCcEEEEECC-----------------CCHHHHHHhcC---cCceEEEEEC-CCCCCCeecC----HHHHHHH
Confidence 001111123334332 36788888885 3567889998 8999998886 9999999
Q ss_pred HHhcCCeEEEeccccCCCcccccccccccCCCcceee--eccccCCCcccc-eeeeecHHHHH-hhhccCCcccccccCC
Q psy8199 452 CNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLC--LSKGITGGYLPL-SLVMTTDKIYN-SIYYKNNINIFLHSHS 527 (965)
Q Consensus 452 ~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt--~sK~l~gG~~pi-g~v~~~~~i~~-~~~~~~~~~~~~~~~t 527 (965)
|+++|+++|+||++. .+..... . ....|+++ ++|.++|....+ |+++++++.+. .+.. +.....
T Consensus 181 a~~~g~~vivD~a~a-~~~~~~~--~---~~gaDivv~S~tK~l~g~g~~~gG~v~~~~~~~~~~l~~------~~~~~g 248 (403)
T PRK07810 181 AHAAGAKVVLDNVFA-TPLLQRG--L---PLGADVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQK------LMRHTG 248 (403)
T ss_pred HHHcCCEEEEECCCC-ccccCCh--h---hcCCcEEEccCCceecCCcCceeEEEEeChHHHHHHHHH------HHHHhC
Confidence 999999999999986 2211111 1 22358775 579887632566 66777776554 2322 111222
Q ss_pred CCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHccc-----CCCceee----------eeceeEEEEEEEe
Q psy8199 528 YSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLI-----THPKIIN----------FRQKGMIWAFDVI 589 (965)
Q Consensus 528 ~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~-----~~~~i~~----------v~g~G~~~~i~~~ 589 (965)
...+|..++.++..|+.+.. ..++-.++..++.+.|++.. .+|++.. ..+-|.++.|++.
T Consensus 249 ~~~s~~~a~l~l~~L~tl~~--R~~~~~~~a~~~a~~L~~~p~v~~V~yP~l~~~p~~~~~~~~~~g~g~~~s~~l~ 323 (403)
T PRK07810 249 PALSAFNAWVLLKGLETLAL--RVRHSNASALRIAEFLEGHPAVRWVRYPFLPSHPQYDLAKRQMSGGGTVVTFELD 323 (403)
T ss_pred CCCCHHHHHHHHhccCcHHH--HHHHHHHHHHHHHHHHhcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEc
Confidence 35688888888888876643 35666667777777776432 1232221 1267889999985
|
|
| >TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.2e-12 Score=139.05 Aligned_cols=195 Identities=13% Similarity=0.133 Sum_probs=148.0
Q ss_pred EeEeeccCCCCCCCCCCCCCCcCCCCcccccCCCHHHHHHHHHHHHHC-CCCEEEEeeccCCCCcccHHHHHHHHHHHHh
Q psy8199 683 VLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSD-GATRFCMGAAWRELKDRDLDNIENMICEVKK 761 (965)
Q Consensus 683 ~~i~~~s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~-g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~ 761 (965)
..+.+ |++|+.+|.||..+...+.. ....++.+++.+.+.++.+. ++.+|.|+||+ |+. .+.+.+.++++.+++
T Consensus 90 vll~v-T~~C~~~Cr~C~r~~~~~~~--~~~~l~~~e~~~~i~~i~~~~~I~~VilSGGD-Pl~-~~~~~L~~ll~~l~~ 164 (321)
T TIGR03822 90 VLLKP-VHVCPVYCRFCFRREMVGPE--GLGVLSPAELDAAFAYIADHPEIWEVILTGGD-PLV-LSPRRLGDIMARLAA 164 (321)
T ss_pred EEEEe-cCCCCCcCcCCCchhhcCCc--ccCcCCHHHHHHHHHHHHhCCCccEEEEeCCC-ccc-CCHHHHHHHHHHHHh
Confidence 44556 99999999999765422211 12346788888888888765 89999887774 543 234567777777766
Q ss_pred cC----cEeEE-----ecCCCCHHHHHHHHHhCCCeEeccCCC-CHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEE
Q psy8199 762 IG----LETCL-----TLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGI 831 (965)
Q Consensus 762 ~~----~~i~~-----~~~~~~~e~l~~Lk~aG~~~i~i~~es-~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i 831 (965)
.+ +.+.+ ++..++++.++.|+++|. .+.+++++ .++.+ .++.+++++.++++|+.+....+
T Consensus 165 i~~v~~iri~Tr~~v~~p~rit~ell~~L~~~g~-~v~i~l~~~h~~el--------~~~~~~ai~~L~~~Gi~v~~q~v 235 (321)
T TIGR03822 165 IDHVKIVRFHTRVPVADPARVTPALIAALKTSGK-TVYVALHANHAREL--------TAEARAACARLIDAGIPMVSQSV 235 (321)
T ss_pred CCCccEEEEeCCCcccChhhcCHHHHHHHHHcCC-cEEEEecCCChhhc--------CHHHHHHHHHHHHcCCEEEEEee
Confidence 43 23433 345679999999999995 57899998 44322 37899999999999998876544
Q ss_pred E--ecCCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
Q psy8199 832 I--GLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTS 896 (965)
Q Consensus 832 ~--Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~ 896 (965)
+ |.+++.+++.++.+.+.+++ +....++.+.|.+||... ..+.++..+++..+|-.++..
T Consensus 236 Ll~gvNd~~~~l~~l~~~l~~~g--v~pyyl~~~~p~~g~~~f---~~~~~~~~~i~~~l~~~~~g~ 297 (321)
T TIGR03822 236 LLRGVNDDPETLAALMRAFVECR--IKPYYLHHLDLAPGTAHF---RVTIEEGQALVRALRGRISGL 297 (321)
T ss_pred EeCCCCCCHHHHHHHHHHHHhcC--CeeEEEEecCCCCCcccc---cCcHHHHHHHHHHHHHhCCCC
Confidence 4 77899999999999999999 888889999999998654 368899999999999888765
|
Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc. |
| >PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.9e-12 Score=144.78 Aligned_cols=240 Identities=13% Similarity=0.134 Sum_probs=157.4
Q ss_pred CCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcC
Q psy8199 292 SNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQS 371 (965)
Q Consensus 292 ~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~ 371 (965)
..+.++...+|+++++++.+ .+....++||+.|+..++.... .++++|++.++.|.+.........
T Consensus 60 ~r~~~p~~~~Le~~lA~l~G--~~~~~~~~sG~~Ai~~~l~~~l--------~~Gd~Vl~~~~~y~~~~~~~~~~~---- 125 (398)
T PRK07504 60 SRYSNPTVDMFEKRMCALEG--AEDARATASGMAAVTAAILCQV--------KAGDHVVAARALFGSCRYVVETLL---- 125 (398)
T ss_pred ecCCCchHHHHHHHHHHHhC--CCeeeEecCHHHHHHHHHHHHh--------CCCCEEEEcCCchhHHHHHHHHHH----
Confidence 45677888999999999985 4566678899999988776543 256889998888866522111000
Q ss_pred ccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHH
Q psy8199 372 FKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREI 451 (965)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l 451 (965)
......+.+++. .|++++++++. +++.+|++|. ++|++|.+.+ +++|.++
T Consensus 126 -----~~~G~~v~~vd~-----------------~d~e~l~~ai~---~~tklV~les-p~NptG~v~d----l~~I~~l 175 (398)
T PRK07504 126 -----PRYGIESTLVDG-----------------LDLDNWEKAVR---PNTKVFFLES-PTNPTLEVID----IAAVAKI 175 (398)
T ss_pred -----hhcCeEEEEECC-----------------CCHHHHHHhcC---cCceEEEEEC-CCCCCcEecC----HHHHHHH
Confidence 001112233321 36788888774 4567888888 7999998887 9999999
Q ss_pred HHhcCCeEEEeccccCCCcccccccccccCCCcceee--eccccCCCcccce-eeeecHHHHHh-hhccCCcccccccCC
Q psy8199 452 CNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLC--LSKGITGGYLPLS-LVMTTDKIYNS-IYYKNNINIFLHSHS 527 (965)
Q Consensus 452 ~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt--~sK~l~gG~~pig-~v~~~~~i~~~-~~~~~~~~~~~~~~t 527 (965)
|+++|+++|+||+|..+ ..... .....|+++ ++|.++|..+++| +++++++.+.. +.. +.....
T Consensus 176 a~~~gi~lvvD~a~a~~-~~~~~-----~~~gaDivv~S~sK~l~g~g~~~GG~vv~~~~~i~~~~~~------~~~~~g 243 (398)
T PRK07504 176 ANQAGAKLVVDNVFATP-LFQKP-----LELGAHIVVYSATKHIDGQGRCLGGVVLSDKAWIEEHLQD------YFRHTG 243 (398)
T ss_pred HHHcCCEEEEECCcccc-ccCCc-----hhhCCCEEEeeccccccCCccceEEEEEeCcHHHHHHHHH------HHHHhC
Confidence 99999999999998632 11111 122367775 5799977437886 56667665542 321 111122
Q ss_pred CCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHccc-----CCCceee----------eeceeEEEEEEEe
Q psy8199 528 YSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLI-----THPKIIN----------FRQKGMIWAFDVI 589 (965)
Q Consensus 528 ~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~-----~~~~i~~----------v~g~G~~~~i~~~ 589 (965)
...+|..++.++..|+.+.. ..++..++..++.+.|++.. .+|++.. .+|-|.|+.|++.
T Consensus 244 ~~~s~~~A~~~l~~L~tl~~--R~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~~~~~~~~~~~~g~g~~~s~~~~ 318 (398)
T PRK07504 244 PSLSPFNAWTLLKGLETLPV--RVRQQTESAAAIADFLAGHPKVARVIYPGRADHPQADIIAKQMTGGSTLVAFELK 318 (398)
T ss_pred CCCCHHHHHHHHhccchHHH--HHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHHhCCCCccEEEEEeC
Confidence 34678888888888877643 35555677778877776532 2344321 2356889999985
|
|
| >COG2100 Predicted Fe-S oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.7e-12 Score=129.53 Aligned_cols=197 Identities=17% Similarity=0.220 Sum_probs=145.6
Q ss_pred cCCCCCCCCCCCCCCcCCC--CcccccCCCHHHHHHHHHHHHHC--CCCEEEEeeccCCCCcccHHHHHHHHHHHHh-cC
Q psy8199 689 TGGCTEDCGYCPQSTHYNT--EITATKILSIESVITAAQKAKSD--GATRFCMGAAWRELKDRDLDNIENMICEVKK-IG 763 (965)
Q Consensus 689 s~~C~~~C~fC~~~~~~~~--~~~~~~~~~~eei~~~~~~~~~~--g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~-~~ 763 (965)
|.+|+.||.||+....... ....| ..++|.+++......+. +.-+.++-+.+.|+... .+.++++++++ .+
T Consensus 114 ~tgCnlnCIfCSVdeGp~SrtR~~dy-~Vd~eyLl~w~~kVa~~KgkglEaHlDGqGEP~lYP---~l~~lVqalk~~~~ 189 (414)
T COG2100 114 STGCNLNCIFCSVDEGPYSRTRKLDY-VVDPEYLLEWFEKVARFKGKGLEAHLDGQGEPLLYP---HLVDLVQALKEHKG 189 (414)
T ss_pred CccccceeEEEeccCCcccceeccce-EecHHHHHHHHHHHHhhhCCCeEEEecCCCCCccch---hHHHHHHHHhcCCC
Confidence 7899999999987642111 11222 36799999888776654 35678888888786654 45555555554 23
Q ss_pred ---cEeEEecCCCCHHHHHHHHHhCCCeEeccCCC-CHHHHhcccC--CCCHHHHHHHHHHHHHcCCceeeeEEEecCCC
Q psy8199 764 ---LETCLTLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIIS--TRDYENRLNTLKNVRNVGINICCGGIIGLSES 837 (965)
Q Consensus 764 ---~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~~es-~~~~~~~i~~--~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et 837 (965)
+.+.++...++++.+++|.+||+|++++++++ +|+.-+.+.+ ..+.+..++..+.+.++||.+-..-++=.|-+
T Consensus 190 v~vVSmQTng~~L~~~lv~eLeeAGLdRiNlSv~aLDpk~Ak~L~G~~dYdv~kvle~aE~i~~a~idvlIaPv~lPG~N 269 (414)
T COG2100 190 VEVVSMQTNGVLLSKKLVDELEEAGLDRINLSVDALDPKLAKMLAGRKDYDVKKVLEVAEYIANAGIDVLIAPVWLPGVN 269 (414)
T ss_pred ceEEEEeeCceeccHHHHHHHHHhCCceEEeecccCCHHHHHHhcCccccCHHHHHHHHHHHHhCCCCEEEeeeecCCcC
Confidence 45567889999999999999999999999999 9999988887 56889999999999999998876666655788
Q ss_pred HHHHHHHHHHHHhcCC--CCCceeeccccccC-C-CCCCCCCCCCHHHHHHHHHHHH
Q psy8199 838 RDQRAELIFQLANLNP--YPESVPINNLVQIK-G-TPLYGSSILDPLEFIRTIAVAR 890 (965)
Q Consensus 838 ~ed~~~~l~~l~~l~~--~~~~i~~~~~~P~~-g-T~l~~~~~~~~~~~~~~ia~~R 890 (965)
++|+...++++++++. .-..+.++.|.|++ | .| ....+++-.++.+-++-.-
T Consensus 270 D~E~~~iIe~A~~iGaGkk~p~lgiQkyipyk~GRkp-~~~k~~~fkeFYrwLrelE 325 (414)
T COG2100 270 DDEMPKIIEWAREIGAGKKWPPLGIQKYIPYKFGRKP-VIAKVWPFKEFYRWLRELE 325 (414)
T ss_pred hHHHHHHHHHHHHhCCCCCCCCcceEEeeeecccCCc-cccccCcHHHHHHHHHHHH
Confidence 8999999999999875 22334577778875 2 22 2234566677776665543
|
|
| >TIGR01328 met_gam_lyase methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.1e-12 Score=143.15 Aligned_cols=243 Identities=16% Similarity=0.136 Sum_probs=158.3
Q ss_pred cCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCc
Q psy8199 291 LSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQ 370 (965)
Q Consensus 291 ~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~ 370 (965)
...+.++...+|+++++++.+ .+.+++++||+.|+..++.... .++++|++.++.|.+. ......
T Consensus 53 y~r~~~p~~~~le~~lA~l~g--~~~av~~~sG~~Ai~~~l~al~--------~~Gd~Vi~~~~~y~~t-~~~~~~---- 117 (391)
T TIGR01328 53 YSRLGNPTVSNLEGRIAFLEG--TEAAVATSSGMGAIAATLLTIL--------KAGDHLISDECLYGCT-FALLEH---- 117 (391)
T ss_pred eeCCCCchHHHHHHHHHHHhC--CCcEEEECCHHHHHHHHHHHHh--------CCCCEEEEecCcchHH-HHHHHH----
Confidence 356677888999999999995 4668899999999998887653 2567788887766443 111110
Q ss_pred CccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHH
Q psy8199 371 SFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVRE 450 (965)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~ 450 (965)
........+.+++. .|++++++++. +++.+|++|. ++|++|.+.+ +++|.+
T Consensus 118 ----~~~~~G~~~~~vd~-----------------~d~e~l~~~i~---~~tklV~le~-p~Np~G~v~d----l~~I~~ 168 (391)
T TIGR01328 118 ----ALTKFGIQVDFINM-----------------AIPEEVKAHIK---DNTKIVYFET-PANPTMKLID----MERVCR 168 (391)
T ss_pred ----HHhcCCeEEEEECC-----------------CCHHHHHHhhc---cCCeEEEEEC-CCCCCCcccC----HHHHHH
Confidence 00011112333332 25777887774 3567888887 7899998876 999999
Q ss_pred HHHhcCCeEEEeccccCCCcccccccccccCCCcceee--eccccCCCccc-ceeeeecHHHHHhhhccCCcccccccCC
Q psy8199 451 ICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLC--LSKGITGGYLP-LSLVMTTDKIYNSIYYKNNINIFLHSHS 527 (965)
Q Consensus 451 l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt--~sK~l~gG~~p-ig~v~~~~~i~~~~~~~~~~~~~~~~~t 527 (965)
+|+++|+++|+||++. .+..+.. .+...|+++ ++|.++|...+ .|++++++++++.+.... .....+
T Consensus 169 la~~~gi~livD~a~a-~~~~~~~-----~~~g~Divv~S~sK~lgg~g~~~gG~v~~~~~li~~l~~~~----~~~~~g 238 (391)
T TIGR01328 169 DAHSQGVKVIVDNTFA-TPMLTNP-----VALGVDVVVHSATKYIGGHGDVVAGLICGKAELLQQIRMVG----IKDMTG 238 (391)
T ss_pred HHHHcCCEEEEECCCc-hhccCCc-----hhcCCCEEEccccccccCCCCceEEEEEcCHHHHHHHHHHH----HHhCCC
Confidence 9999999999999985 2222221 233467764 67999863245 467778888887665310 000112
Q ss_pred CCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHccc-----CCCcee----------eeeceeEEEEEEEe
Q psy8199 528 YSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLI-----THPKII----------NFRQKGMIWAFDVI 589 (965)
Q Consensus 528 ~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~-----~~~~i~----------~v~g~G~~~~i~~~ 589 (965)
...+|..++.++..|+.+. ...++.+++.+++.+.|++.. .+|++. ..++-|.+++|++.
T Consensus 239 ~~l~~~~a~l~l~~L~tl~--~r~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~~~~~~~~~~~~~~g~~~s~~~~ 313 (391)
T TIGR01328 239 SVISPFDAWLILRGLKTLN--IRMKRHSENAMKVAEYLKSHPAVEKVYYPGFEDHPGHDIAAKQMRMGGGMITFELK 313 (391)
T ss_pred CCCCcHHHHHHHhCcCcHH--HHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCCCceEEEEeC
Confidence 3457777777777675543 236667777888888886542 233322 13466889999985
|
This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine. |
| >KOG1357|consensus | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.5e-12 Score=137.61 Aligned_cols=309 Identities=15% Similarity=0.126 Sum_probs=193.0
Q ss_pred CHHHHHHHHHHHhhcccc----ccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCce
Q psy8199 272 NSYINKALKNQLNKLEHV----MLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKK 347 (965)
Q Consensus 272 ~p~v~~av~~~~~~~~~~----~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~ 347 (965)
+-...+++.+.+++.+.. ....+..+...++.+..++..+ .+..+..+-|...|..-+-.. -++.
T Consensus 153 ~g~ca~~~~~~~~kygl~~css~~e~G~~~~hkelE~l~A~f~g--~e~a~vF~mGf~TNs~~~p~l---------~~~g 221 (519)
T KOG1357|consen 153 VGPCAEASLKSFDKYGLSRCSSRHEAGTTEEHKELEELVARFLG--VEDAIVFSMGFATNSMNIPSL---------LGKG 221 (519)
T ss_pred CCcCChHHHHHHHHhcccccccchhcccHHHHHHHHHHHHHhcC--CcceEEEeccccccccCccee---------ecCC
Confidence 333444445555554332 1223678888999999999985 344443344555554444333 2455
Q ss_pred EEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhC---------
Q psy8199 348 KFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKN--------- 418 (965)
Q Consensus 348 ~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~--------- 418 (965)
..|..|.--|++-.....++|. ... .+.+||.++||++|++.
T Consensus 222 sLIiSDelNHaSi~~GaRLSgA-------------tiR----------------VfkHNdm~~LEr~Lrd~I~~gqP~Th 272 (519)
T KOG1357|consen 222 SLIISDELNHASLITGARLSGA-------------TTR----------------VFRHNDMQGLERLLRDAIVYGQPKTH 272 (519)
T ss_pred cceeeccccchheeccccccCc-------------eEE----------------EEecCCHHHHHHHHHHHHhcCCCCcC
Confidence 6677777888886555555541 111 12347899999998763
Q ss_pred -CCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccC--CCcccccccccccCCCc---cee--eec
Q psy8199 419 -HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVG--CGRTGKFFACEHAEIWP---DFL--CLS 490 (965)
Q Consensus 419 -~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg--~gr~G~~~~~~~~~~~p---Div--t~s 490 (965)
+.+...|++|. +.++.|.+.. |.++.+++++|.+.|+.||+++. .|++| .+.++++|+.| |++ ||.
T Consensus 273 rp~kki~iiveg-iysmEg~iv~----Lp~vvalkkkykayl~lDEAHSiGA~g~tG-rgvce~~g~d~~dvDImMGtft 346 (519)
T KOG1357|consen 273 RPWKKILICVEG-IYSMEGTIVD----LPEVVALKKKYKAYLYLDEAHSIGAMGATG-RGVCEYFGVDPEDVDIMMGTFT 346 (519)
T ss_pred Ccchheeeeecc-ceeccCeecc----cHHHHHhhccccEEEEeeccccccccCCCC-cceeeccCCCchhheeecceeh
Confidence 22456788999 9999999998 88899999999999999999983 33444 35778888754 444 788
Q ss_pred cccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc-------ccHHHHHHHHHHHHHH
Q psy8199 491 KGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK-------DNILQRISQDMKKITK 563 (965)
Q Consensus 491 K~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~-------~~~~~~~~~~~~~l~~ 563 (965)
|+.++++ |++.+++++++.++.. .....++ | .-+|+.+.-.+.+++.+.- ....++++++..+++.
T Consensus 347 KSfga~G---Gyiagsk~lid~lrt~--s~~~~ya-t-~~sppvaqq~~ssl~~i~G~dgt~~g~~k~~~l~~ns~yfr~ 419 (519)
T KOG1357|consen 347 KSFGAAG---GYIAGSKELIDYLRTP--SPSALYA-T-SLSPPVAQQILTSVKHIMGEDGTNRGRQKIERLAENSRYFRW 419 (519)
T ss_pred hhccccc---ceecCcHHHHhhhccC--CCceeec-c-cCChHHHHHHHHHHHhhcCCCcccHHHHHHHHHHhhhHHHHH
Confidence 8776542 6788999999988762 1112222 2 2345555566677777653 1256777888888888
Q ss_pred HHHcccCCCceeee-eceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec--------CCEEEEeCCcccCHHHH
Q psy8199 564 ALTSLITHPKIINF-RQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI--------GNTVYLMPPYILNKNEI 634 (965)
Q Consensus 564 ~L~~l~~~~~i~~v-~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~--------~~~lR~~p~~~~t~~~i 634 (965)
.|+.. ++-.. .-......+-+. .......+.+.|+++++-+... ....||..+..++.|++
T Consensus 420 ~l~~~----gfivyG~~dSpVvplll~------~~~k~~~f~r~~l~~nigvVvvgfPatpl~e~r~R~c~Sa~ht~e~l 489 (519)
T KOG1357|consen 420 ELQKM----GFIVYGNNDSPVVPLLLY------GPAKIVAFSREMLERNIGVVVVGFPATPLLESRARFCLSASHTKEDL 489 (519)
T ss_pred hhhcC----cEEEecCCCCCcceeeec------CcccccHHHHHHHhcCceEEEEeCCCchHHHhHHHhhhcccccHHHH
Confidence 87664 11100 000100001111 0111224667888887655421 14678998899999999
Q ss_pred HHHHHhhhc
Q psy8199 635 QHMTSAIFQ 643 (965)
Q Consensus 635 ~~~~~~l~~ 643 (965)
+.+++.+..
T Consensus 490 d~~l~~i~~ 498 (519)
T KOG1357|consen 490 DRALEVIDR 498 (519)
T ss_pred HHHHHHHhh
Confidence 998887654
|
|
| >TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.6e-12 Score=142.16 Aligned_cols=240 Identities=12% Similarity=0.126 Sum_probs=159.0
Q ss_pred CCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcC
Q psy8199 292 SNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQS 371 (965)
Q Consensus 292 ~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~ 371 (965)
.++.++...+|++.++++.+ .+.+++++||++|+..++.... .++++|++.++.|.+...........
T Consensus 46 ~R~~~p~~~~le~~lA~l~g--~~~v~~~~gg~~Ai~~~l~all--------~~GD~Vl~~~p~y~~~~~~~~~~~~~-- 113 (382)
T TIGR02080 46 SRSGNPTRDLLQQALAELEG--GAGAVVTNTGMSAIHLVTTALL--------GPDDLLVAPHDCYGGTYRLLNALAKK-- 113 (382)
T ss_pred cCCCCchHHHHHHHHHHHhC--CCcEEEEcCHHHHHHHHHHHHc--------CCCCEEEEcCCCcHHHHHHHHHHHhh--
Confidence 56788889999999999985 4789999999999999988663 35688999999997642111010000
Q ss_pred ccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHH
Q psy8199 372 FKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREI 451 (965)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l 451 (965)
....+.+++. .|+++++++++ +++.+|+++. ++|++|.+.+ +++|.++
T Consensus 114 -------~~~~v~~~d~-----------------~d~~~l~~ai~---~~tklV~l~~-p~NPtG~~~d----l~~I~~l 161 (382)
T TIGR02080 114 -------GCFRVLFVDQ-----------------GDEQALRAALA---QKPKLVLIET-PSNPLLRVVD----IAKICHL 161 (382)
T ss_pred -------cCeEEEEECC-----------------CCHHHHHHhcC---cCceEEEEEC-CCCCCCEecC----HHHHHHH
Confidence 0011122211 25678888875 3467777877 7999998887 8899999
Q ss_pred HHhcCCeEEEeccccCCCcccccccccccCCCccee--eeccccCC-Ccccceeeee-cHHHHHhhhccCCcccccccCC
Q psy8199 452 CNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL--CLSKGITG-GYLPLSLVMT-TDKIYNSIYYKNNINIFLHSHS 527 (965)
Q Consensus 452 ~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDiv--t~sK~l~g-G~~pig~v~~-~~~i~~~~~~~~~~~~~~~~~t 527 (965)
|+++|+++|+||+|..+ .... -.....|++ +++|.++| +....|++++ ++++.+.+.. +....+
T Consensus 162 a~~~g~~vvvD~a~~~~-~~~~-----pl~~gaDivv~S~sK~l~G~~~~~~G~i~~~~~~~~~~l~~------~~~~~g 229 (382)
T TIGR02080 162 AKAVGAVVVVDNTFLSP-ALQN-----PLALGADLVLHSCTKYLNGHSDVIAGAVIAKDPQVAEELAW------WANNLG 229 (382)
T ss_pred HHHcCCEEEEECCCccc-ccCC-----chhhCCCEEEeecceeccCCCCceeEEEEeCCHHHHHHHHH------HHHccC
Confidence 99999999999999632 1111 112235776 57898875 2246777766 5667665543 122234
Q ss_pred CCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHccc-----CCCceee----------eeceeEEEEEEEe
Q psy8199 528 YSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLI-----THPKIIN----------FRQKGMIWAFDVI 589 (965)
Q Consensus 528 ~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~-----~~~~i~~----------v~g~G~~~~i~~~ 589 (965)
...+|+.+..++..|+.+... .++..++...+.+.|++.. .+|++.. ..|.|.|+.|++.
T Consensus 230 ~~~sp~~a~l~lr~l~tl~~R--~~~~~~na~~~a~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~ 304 (382)
T TIGR02080 230 VTGGAFDSYLTLRGLRTLVAR--MRLQQRNAQAIVEYLQTQPLVKKIYYPGLPDHPGHEIAARQQKGFGAMLSFELK 304 (382)
T ss_pred CCCCHHHHHHHHcccchHHHH--HHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEec
Confidence 457888888888777766432 5566677777777776431 2333221 2467889999985
|
This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine. |
| >PRK07582 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.46 E-value=6.4e-12 Score=140.54 Aligned_cols=279 Identities=14% Similarity=0.109 Sum_probs=173.2
Q ss_pred CCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcC
Q psy8199 292 SNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQS 371 (965)
Q Consensus 292 ~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~ 371 (965)
..++++...+|+++++++. + +.+++++||++|+..++.... .++++||+.+++|+++.......
T Consensus 46 ~ry~~p~~~~Le~~lA~l~--~-~~~v~~~sG~~Ai~~~l~all--------~~Gd~Vl~~~~~y~~~~~~~~~~----- 109 (366)
T PRK07582 46 GRASNPTWRALEAALGELE--G-AEALVFPSGMAAITAVLRALL--------RPGDTVVVPADGYYQVRALAREY----- 109 (366)
T ss_pred ECCCCccHHHHHHHHHHHc--C-CCEEEECCHHHHHHHHHHHhc--------CCCCEEEEeCCCcHhHHHHHHHH-----
Confidence 4577888899999999988 3 467777889999998886543 35688999999998763321100
Q ss_pred ccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHH
Q psy8199 372 FKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREI 451 (965)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l 451 (965)
.......+.+++... +. +. + .+++..|++|. ++|++|.+.+ +++|.++
T Consensus 110 ----l~~~G~~v~~v~~~~----------------~~---~~-~---~~~t~lV~le~-p~NPtg~v~d----i~~I~~~ 157 (366)
T PRK07582 110 ----LAPLGVTVREAPTAG----------------MA---EA-A---LAGADLVLAET-PSNPGLDVCD----LAALAAA 157 (366)
T ss_pred ----HhcCeEEEEEECCCC----------------hH---HH-h---ccCceEEEEEC-CCCCCCCccC----HHHHHHH
Confidence 000111234444321 10 11 1 13466777777 7888887766 9999999
Q ss_pred HHhcCCeEEEecccc-CCCcccccccccccCCCccee--eeccccCC-Ccccceeeeec-HHHHHhhhccCCcccccccC
Q psy8199 452 CNNYNIHLIADEIAV-GCGRTGKFFACEHAEIWPDFL--CLSKGITG-GYLPLSLVMTT-DKIYNSIYYKNNINIFLHSH 526 (965)
Q Consensus 452 ~~~~g~llI~DEv~t-g~gr~G~~~~~~~~~~~pDiv--t~sK~l~g-G~~pig~v~~~-~~i~~~~~~~~~~~~~~~~~ 526 (965)
|+++|+++|+||+|. .+| . .-.....|++ +++|.++| +..++|+++++ +++++.+.. +....
T Consensus 158 a~~~g~~lvVD~t~~~~~~---~----~p~~~g~Divv~S~sK~l~G~~g~~~G~v~~~~~~l~~~l~~------~~~~~ 224 (366)
T PRK07582 158 AHAAGALLVVDNTTATPLG---Q----RPLELGADLVVASDTKALTGHSDLLLGYVAGRDPELMAAVER------WRLLA 224 (366)
T ss_pred HHHcCCEEEEECCCCCccc---c----CchhcCCcEEEecccccccCCCCeeEEEEEcCcHHHHHHHHH------HHHHh
Confidence 999999999999984 222 1 1112346777 46899876 22578888874 677776653 11112
Q ss_pred CCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcccC-----CCceee----------eeceeEEEEEEEeec
Q psy8199 527 SYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLIT-----HPKIIN----------FRQKGMIWAFDVIIE 591 (965)
Q Consensus 527 t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~~-----~~~i~~----------v~g~G~~~~i~~~~~ 591 (965)
+...+|..+..++..|+.+. -..++..++...+.+.|++... +|++.. ..|.|.++.|++.
T Consensus 225 g~~~~~~~a~l~~r~l~tl~--~R~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~~~gg~~s~~~~-- 300 (366)
T PRK07582 225 GAIPGPFEAWLAHRSLGTLG--LRFARQCANALAVAELLAGHPAVRGVRYPGLPGDPAHEVAARQMRRFGGLVSFELA-- 300 (366)
T ss_pred CCCCCHHHHHHHHhccccHH--HHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHhhCCCCcceEEEEeC--
Confidence 23456888777777776443 2346777788888888876432 333321 1257889999985
Q ss_pred CccchhhHHHHHHHHHHHcCcEEe--------------------ecCCEEEEeCCcccCHHHHHHHHHhhh
Q psy8199 592 DPEQIETFSKKFFVAALKNELLLR--------------------PIGNTVYLMPPYILNKNEIQHMTSAIF 642 (965)
Q Consensus 592 ~~~~~~~~~~~~~~~l~~~Gi~~~--------------------~~~~~lR~~p~~~~t~~~i~~~~~~l~ 642 (965)
+ .. ...+.+.+.+++.. ..++.||+++.+-..++.++++.+++.
T Consensus 301 ~----~~---~~~~~~~~l~~~~~~~s~G~~~sl~~~~~~~~~~~~~~liR~svGlE~~~dli~dl~~al~ 364 (366)
T PRK07582 301 D----AA---AAERFVAASRLVVAATSFGGVHTSADRRARWGDAVPEGFVRLSCGIEDTDDLVADLERALD 364 (366)
T ss_pred C----HH---HHHHHHHhCCcceecccCCCccchhhhHHHcCCCCCCCeEEEEeccCCHHHHHHHHHHHHh
Confidence 2 11 12233333344332 012579999887777777776666553
|
|
| >TIGR01788 Glu-decarb-GAD glutamate decarboxylase | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.9e-11 Score=136.66 Aligned_cols=338 Identities=9% Similarity=-0.001 Sum_probs=194.3
Q ss_pred CCHHHHHHHHHHHhh-ccccccCCCCcHHHHHHHHHHHhhcCCC-C-CeEEE--cCChhHHHHHHHHHHHHHHHh----c
Q psy8199 271 SNSYINKALKNQLNK-LEHVMLSNLTHKPVIKLSEKLSSLTQYK-L-GHCFY--GSDGASAVEVALKMSFHYWYN----K 341 (965)
Q Consensus 271 ~~p~v~~av~~~~~~-~~~~~~~~~~~~~~~~la~~l~~~~~~~-~-~~v~~--~~sGseA~~~Al~~a~~~~~~----~ 341 (965)
.+|++.+++...+.. .......+...+..++..+.++++++.+ . +++.| |+||||||..|++.++..+.. .
T Consensus 53 ~~p~~~~~~~~~l~~~~~np~s~~~~~~le~~~~~~la~llg~~~~~~~~~g~~TsGgTEAn~~al~~ar~~~~~~~~~~ 132 (431)
T TIGR01788 53 MEPEARKLMDETINKNMIDKDEYPQTAEIENRCVNMLADLWHAPAKDAEAVGTSTIGSSEAIMLGGLAMKWRWRKRMEAA 132 (431)
T ss_pred CCHHHHHHHHHHHhcCCCCcccCccHHHHHHHHHHHHHHHhCCCCCCCCCeEEEechHHHHHHHHHHHHHHHHHHHHHhc
Confidence 489999999888863 2222112333466778888899998754 2 35655 899999999999988753221 1
Q ss_pred CCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCc
Q psy8199 342 GFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNK 421 (965)
Q Consensus 342 g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~ 421 (965)
|.......++....-|-+..-+....+ ..+..+|.....+. .|+++|+++|.+ +
T Consensus 133 g~~~~~~~ii~s~~~H~sv~ka~~~lg------------~~v~~i~~d~~~~~-----------vd~~~L~~~i~~---~ 186 (431)
T TIGR01788 133 GKPTDKPNLVMGSNVQVCWEKFARYFD------------VELREVPMDPGRYV-----------IDPEQVVEAVDE---N 186 (431)
T ss_pred CCCCCCcEEEEcCcchHHHHHHHHHcC------------ceeEEEecCCCcee-----------eCHHHHHHHHhh---C
Confidence 211112234444444554322222111 23445554321111 378999999863 3
Q ss_pred EEEEEEccccccCCCcccCChHHHHHHHHHHHhc------CCeEEEeccccCCCc---ccc-cccccccCCCcceeeecc
Q psy8199 422 IAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNY------NIHLIADEIAVGCGR---TGK-FFACEHAEIWPDFLCLSK 491 (965)
Q Consensus 422 ~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~------g~llI~DEv~tg~gr---~G~-~~~~~~~~~~pDivt~sK 491 (965)
+.+|++.- +++++|.+.| +++|.++|+++ |+++++|-+|.|+-. .++ .+.+. ....|.++++-
T Consensus 187 t~lV~~t~-g~t~tG~idp----i~~I~~i~~~~~~~~~~~~~~HvDaaq~g~~~p~~~~~~~~~~~--~~~~DSis~s~ 259 (431)
T TIGR01788 187 TIGVVCIL-GTTYTGEYED----VKALNDALDEYNAKTGWDIPIHVDAASGGFIAPFVYPDLEWDFR--LPRVKSINVSG 259 (431)
T ss_pred CeEEEEEe-CCCCCcccCC----HHHHHHHHHHHHhhhCCCceEEEecccHHHHHHHhCCCchhhcC--CCCceEEEECc
Confidence 45666665 7899999999 99999999999 999999999986421 122 11111 22468899885
Q ss_pred cc-CCCcccceeeeecHH--HHHhhhccCCcc-cccccCCCCCCHH--HHHHHHHHHHHHhcc---cHHHHHHHHHHHHH
Q psy8199 492 GI-TGGYLPLSLVMTTDK--IYNSIYYKNNIN-IFLHSHSYSGNPL--ACCAALATLEIFNKD---NILQRISQDMKKIT 562 (965)
Q Consensus 492 ~l-~gG~~pig~v~~~~~--i~~~~~~~~~~~-~~~~~~t~~~~~~--~~aaa~a~L~~~~~~---~~~~~~~~~~~~l~ 562 (965)
.- +.|...+|+++.+++ +.+.+......- .-....|..+... ..++...+|..+... ...++..++.++|.
T Consensus 260 HK~~~~P~g~G~l~~r~~~~l~~~~~~~~~yl~~~~~~~t~~~sR~g~~al~~w~~l~~lG~~G~~~i~~~~~~la~~l~ 339 (431)
T TIGR01788 260 HKYGLVYPGVGWVIWRDEEALPEELIFHVNYLGGDEPTFTLNFSRPANQVIAQYYNFLRLGREGYRKIMQNSLDVARYLA 339 (431)
T ss_pred hhccCCCCCcEEEEEeChHHcchhheecccccCCCCCCcceecCchHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHH
Confidence 33 324467888888764 333332100000 0000112222221 223334445444433 34566667788888
Q ss_pred HHHHcccCCCceeeee--ceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEe----ec---C-CEEEEeCCcccCHH
Q psy8199 563 KALTSLITHPKIINFR--QKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLR----PI---G-NTVYLMPPYILNKN 632 (965)
Q Consensus 563 ~~L~~l~~~~~i~~v~--g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~----~~---~-~~lR~~p~~~~t~~ 632 (965)
++|++. |.+..+. ....++.|.+. .+. ........+.+.|.++|+.+. |. + -.+|++.-.-++.+
T Consensus 340 ~~L~~~---~~~el~~~~~~~~iV~Fr~~-~~~-~~~~~~~~l~~~L~~~G~~~~~~~~p~~~~~~~~lR~~~~~~~~~~ 414 (431)
T TIGR01788 340 EEIAKL---GPFEIISDGSGIPLVAFKLK-DDA-DPGYTLYDLSHRLRERGWIVPAYTLPKNAEDIVVMRIVVREGFSRD 414 (431)
T ss_pred HHHHhC---CCEEEeeCCCCceEEEEEeC-CCC-CCCcCHHHHHHHHHHCCCcccCCCCCCccCCeEEEEEEecCCCCHH
Confidence 877665 4444222 24556666654 111 001113467888999998642 21 1 25788755556788
Q ss_pred HHHHHHHhhhcccc
Q psy8199 633 EIQHMTSAIFQTFN 646 (965)
Q Consensus 633 ~i~~~~~~l~~~~~ 646 (965)
.++++++.+..++.
T Consensus 415 ~~~~~~~~~~~~~~ 428 (431)
T TIGR01788 415 LAELLIEDIEAALA 428 (431)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888887765543
|
This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA). |
| >TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E | Back alignment and domain information |
|---|
Probab=99.45 E-value=6.8e-12 Score=140.51 Aligned_cols=174 Identities=19% Similarity=0.285 Sum_probs=137.0
Q ss_pred EeEeEeeccCCCCCCCCCCCCCCcCCCCcccccCCCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHH
Q psy8199 681 LAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVK 760 (965)
Q Consensus 681 ~~~~i~~~s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~ 760 (965)
+...+++ |+.|+.+|.||........ ....++.+++.+.+.++.+.|+..+.|+|| +|+... .+.++++.++
T Consensus 7 ~~l~iei-T~~CNl~C~~C~~~~~~~~---~~~~l~~e~~~~ii~~~~~~g~~~v~~~GG-EPll~~---~~~~ii~~~~ 78 (358)
T TIGR02109 7 LWLLAEL-THRCPLQCPYCSNPLELAR---RKAELTTEEWTDVLTQAAELGVLQLHFSGG-EPLARP---DLVELVAHAR 78 (358)
T ss_pred cEEEEee-ccccCcCCCCCCCChhccc---ccCCCCHHHHHHHHHHHHhcCCcEEEEeCc-cccccc---cHHHHHHHHH
Confidence 3455677 9999999999976432111 223489999999999999999999999876 465553 3566777777
Q ss_pred hcCcE--eEEecCCCCHHHHHHHHHhCCCeEeccCCC-CHHHHhcccCC-CCHHHHHHHHHHHHHcCCceeeeEEEecCC
Q psy8199 761 KIGLE--TCLTLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIIST-RDYENRLNTLKNVRNVGINICCGGIIGLSE 836 (965)
Q Consensus 761 ~~~~~--i~~~~~~~~~e~l~~Lk~aG~~~i~i~~es-~~~~~~~i~~~-~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~e 836 (965)
+.++. +.+|...++++.++.|+++|++.+.+++++ +++.+.++++. .+++..+++++.++++|+++...+++ ..+
T Consensus 79 ~~g~~~~l~TNG~ll~~e~~~~L~~~g~~~v~iSldg~~~e~~d~~rg~~g~f~~v~~~i~~l~~~g~~v~v~~vv-~~~ 157 (358)
T TIGR02109 79 RLGLYTNLITSGVGLTEARLDALADAGLDHVQLSFQGVDEALADRIAGYKNAFEQKLAMARAVKAAGLPLTLNFVI-HRH 157 (358)
T ss_pred HcCCeEEEEeCCccCCHHHHHHHHhCCCCEEEEeCcCCCHHHHHHhcCCccHHHHHHHHHHHHHhCCCceEEEEEe-ccC
Confidence 66654 455556689999999999999999999999 78999998764 47999999999999999988665544 368
Q ss_pred CHHHHHHHHHHHHhcCCCCCceeeccccc
Q psy8199 837 SRDQRAELIFQLANLNPYPESVPINNLVQ 865 (965)
Q Consensus 837 t~ed~~~~l~~l~~l~~~~~~i~~~~~~P 865 (965)
+.+++.+.++++.+++ ++.+.+..+.+
T Consensus 158 N~~~l~~~~~~~~~lg--~~~i~~~~~~~ 184 (358)
T TIGR02109 158 NIDQIPEIIELAIELG--ADRVELATTQY 184 (358)
T ss_pred CHHHHHHHHHHHHHcC--CCEEEEEeeec
Confidence 9999999999999999 78777764433
|
This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases. |
| >PRK08776 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=7.2e-12 Score=141.42 Aligned_cols=241 Identities=14% Similarity=0.133 Sum_probs=156.4
Q ss_pred cCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCc
Q psy8199 291 LSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQ 370 (965)
Q Consensus 291 ~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~ 370 (965)
.+.+.++...+|+++++++.+ .+..++++||++|+..++..... ++++|++..+.|++.....
T Consensus 54 y~R~~~p~~~~Le~~lA~l~g--~~~~v~~~sG~~Ai~~~l~all~--------pGD~Vvv~~p~Y~~t~~~~------- 116 (405)
T PRK08776 54 YTRSGNPTRDLLGEALAELEG--GAGGVITATGMGAINLVLNALLQ--------PGDTLVVPHDAYGGSWRLF------- 116 (405)
T ss_pred ccCCCChHHHHHHHHHHHHhC--CCceEEEcCHHHHHHHHHHHHhC--------CCCEEEEccCCchHHHHHH-------
Confidence 356777888899999999886 34567778899999888876632 5688999999997632100
Q ss_pred CccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHH
Q psy8199 371 SFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVRE 450 (965)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~ 450 (965)
+.........+..++. .|+++|+++++ +++.+|+++. ++|++|.+.+ +++|.+
T Consensus 117 --~~~~~~~g~~v~~v~~-----------------~d~~~l~~~i~---~~tklV~l~~-P~NPtG~v~d----l~~I~~ 169 (405)
T PRK08776 117 --NALAKKGHFALITADL-----------------TDPRSLADALA---QSPKLVLIET-PSNPLLRITD----LRFVIE 169 (405)
T ss_pred --HHHHHhcCcEEEEECC-----------------CCHHHHHHhcC---cCCeEEEEEC-CCCCCCccCC----HHHHHH
Confidence 0000001112233322 25678888775 2456677776 6899998865 999999
Q ss_pred HHHhcCCeEEEeccccCCCcccccccccccCCCcceee--eccccCCC-cccceeeee-cHHHHHhhhccCCcccccccC
Q psy8199 451 ICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLC--LSKGITGG-YLPLSLVMT-TDKIYNSIYYKNNINIFLHSH 526 (965)
Q Consensus 451 l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt--~sK~l~gG-~~pig~v~~-~~~i~~~~~~~~~~~~~~~~~ 526 (965)
+|+++|+++|+||+|...... ... ....|+++ .+|.++|. ....|++++ ++++.+.+.. .....
T Consensus 170 la~~~gi~vIvD~a~a~~~~~---~pl---~~gaDivv~S~tK~l~g~~~~~~G~vv~~~~~l~~~l~~------~~~~~ 237 (405)
T PRK08776 170 AAHKVGALTVVDNTFLSPALQ---KPL---EFGADLVLHSTTKYINGHSDVVGGAVVARDAELHQQLVW------WANAL 237 (405)
T ss_pred HHHHcCCEEEEECCCcccccC---Ccc---cccCCEEEecCceeecCCCCceEEEEEeCCHHHHHHHHH------HHHhc
Confidence 999999999999998632111 111 23457775 46888752 234676666 4666665543 11122
Q ss_pred CCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHccc-----CCCcee----------eeeceeEEEEEEEe
Q psy8199 527 SYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLI-----THPKII----------NFRQKGMIWAFDVI 589 (965)
Q Consensus 527 t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~-----~~~~i~----------~v~g~G~~~~i~~~ 589 (965)
.+..+|+.+.+++..|+.+. ...++..++...+.+.|++.. .+|++. ...|-|.|++|++.
T Consensus 238 g~~~s~~~a~l~~~gl~tl~--~r~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~ 313 (405)
T PRK08776 238 GLTGSPFDAFLTLRGLRTLD--ARLRVHQENADAIAALLDGHAAVNQVYYPGLASHPGHALAARQQKGFGAMLSFELE 313 (405)
T ss_pred CCCCCHHHHHHHHhhhCcHH--HHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCcCHHHHHhcCCCCceEEEEEEc
Confidence 34568999988888777663 256777778888888876542 133322 12467889999985
|
|
| >PRK07269 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.44 E-value=8.7e-12 Score=138.80 Aligned_cols=235 Identities=16% Similarity=0.201 Sum_probs=155.4
Q ss_pred cCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCc
Q psy8199 291 LSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQ 370 (965)
Q Consensus 291 ~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~ 370 (965)
.+++.++...+|+++++++. +.++++.++||++|+.+++.+. .++++||+....|++..... ...
T Consensus 48 Y~R~~~p~~~~le~~lA~le--g~~~~v~~~sG~aAi~~~l~~l---------~~GD~VI~~~~~yg~~~~~~-~~~--- 112 (364)
T PRK07269 48 YTRTKNPTRAKLEETLAAIE--SADYALATSSGMSAIVLAFSVF---------PVGSKVVAVRDLYGGSFRWF-NQQ--- 112 (364)
T ss_pred eeCCCCccHHHHHHHHHHHh--CCCeEEEeCCHHHHHHHHHHHh---------CCCCEEEEecCCcCchHHHH-HHH---
Confidence 35677888999999999998 5689999999999999998533 25688999888875542110 000
Q ss_pred CccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHH
Q psy8199 371 SFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVRE 450 (965)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~ 450 (965)
... .++ .+... .|++++++++. +++.+|++|. +.|++|.+.+ +++|.+
T Consensus 113 -----~~~--~~~-~~~~~----------------~d~~~l~~~i~---~~TklV~les-P~NPtg~~~d----i~~I~~ 160 (364)
T PRK07269 113 -----EKE--GRF-HFTYA----------------NTEEELIAAIE---EDTDIVYIET-PTNPLMVEFD----IEKVAK 160 (364)
T ss_pred -----Hhc--CcE-EEEec----------------CCHHHHHHhcC---cCceEEEEEC-CCCCCCeeeC----HHHHHH
Confidence 000 011 01110 25678888885 3567888888 7899998776 999999
Q ss_pred HHHhcCCeEEEeccccCCCcccccccccccCCCcceeee--ccccCC-Ccccceeeee-cHHHHHhhhccCCcccccccC
Q psy8199 451 ICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCL--SKGITG-GYLPLSLVMT-TDKIYNSIYYKNNINIFLHSH 526 (965)
Q Consensus 451 l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~--sK~l~g-G~~pig~v~~-~~~i~~~~~~~~~~~~~~~~~ 526 (965)
+|+++|+++|+||++... . ...-.+...|++++ +|.++| |-.-.|++++ ++++++.+.. .....
T Consensus 161 la~~~gi~vvvD~t~~~~-~-----~~~pl~~gaDivv~S~tK~l~g~~d~~gG~v~~~~~~l~~~~~~------~~~~~ 228 (364)
T PRK07269 161 LAHAKGAKVIVDNTFYSP-I-----YQRPIELGADIVLHSATKYLSGHNDVLAGVVVTNDLELYEKLFY------NLNTT 228 (364)
T ss_pred HHHHcCCEEEEECCCccc-c-----cCCchhhCCcEEEecCceeccCCCcccceEEEeCcHHHHHHHHH------HHHHh
Confidence 999999999999996321 1 11223456788865 588876 2112356666 4667665543 11111
Q ss_pred CCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcccCCCceee--eeceeEEEEEEEe
Q psy8199 527 SYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIIN--FRQKGMIWAFDVI 589 (965)
Q Consensus 527 t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~i~~--v~g~G~~~~i~~~ 589 (965)
....+|..++.++..|+.+. ...++-+++..++.+.|++ +|.+.. .+|.|.+++|++.
T Consensus 229 G~~~s~~~a~l~~~~L~tL~--~r~~~~~~na~~~a~~L~~---~p~v~~v~ypg~gg~~sf~~~ 288 (364)
T PRK07269 229 GAVLSPFDSYLLMRGLKTLS--LRMERSTANAQEVVAFLKK---SPAVKEVLYTGKGGMISFKVA 288 (364)
T ss_pred CCCCCHHHHHHHHcCCCcHH--HHHHHHHHHHHHHHHHHHh---CCCccEEeCCCcCcEEEEEEC
Confidence 23568888888888886653 2356666777777776654 565542 3678999999985
|
|
| >COG2516 Biotin synthase-related enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.9e-12 Score=131.73 Aligned_cols=250 Identities=17% Similarity=0.282 Sum_probs=173.6
Q ss_pred cCCCCCCCCCCCCCCcCCCC--c-----ccccCCCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHH-
Q psy8199 689 TGGCTEDCGYCPQSTHYNTE--I-----TATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVK- 760 (965)
Q Consensus 689 s~~C~~~C~fC~~~~~~~~~--~-----~~~~~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~- 760 (965)
-.+|..+|.||++++..... . ..|+....+++++...+... .+++++++.-..+ ....++..++++++
T Consensus 38 ~~~c~~~ca~c~~ar~s~a~p~~~~lsRv~w~~v~l~~~~~~~~~~~g-~~~rici~~i~~p---~~~~d~~~i~~~~~~ 113 (339)
T COG2516 38 PGGCIADCAYCPQARSSTANPPKKVLSRVEWPAVALEEVLKRLFYDLG-NFKRICIQQIAYP---RALNDLKLILERLHI 113 (339)
T ss_pred CCceeechhhChhhhhcccCCCcceeeecccccchHHHHHhHhhhhhc-ccccccceeeccc---cccchhhhhhhhhhh
Confidence 48999999999987632211 0 13444456777766554332 3788888777655 23445555666666
Q ss_pred hcCcEeEEe--cCCCC-HHHHHHHHHhCCCeEeccCCC-CHHHHhcccC----CCCHHHHHHHHHHHHH-cC-CceeeeE
Q psy8199 761 KIGLETCLT--LGMLN-ENQAYRLKKVGLDYYNHNLDT-SPKLYGDIIS----TRDYENRLNTLKNVRN-VG-INICCGG 830 (965)
Q Consensus 761 ~~~~~i~~~--~~~~~-~e~l~~Lk~aG~~~i~i~~es-~~~~~~~i~~----~~~~~~~~~~i~~~~~-~G-i~v~~~~ 830 (965)
+.+..++++ ..... .+.+...++.|.+++.+.++. ++++|+++.+ .|+|++..+.++.+.+ .| -++..|+
T Consensus 114 ~~~~~itiseci~~~~~~~~l~e~~klg~d~l~V~~daa~~~~~e~v~~~s~s~~S~e~~~~~l~~~~~~~~k~rv~ihl 193 (339)
T COG2516 114 RLGDPITISECITAVSLKEELEEYRKLGADYLGVAEDAANEELFEKVRKTSGSPHSWERYWEFLEKVAEAFGKGRVGIHL 193 (339)
T ss_pred ccCCceehhhhhhcccchHHHHHHHhcchhhhhHHHHhcCHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhccCCcceeE
Confidence 456555554 33333 899999999999999999999 9999999943 4789999999999777 45 6899999
Q ss_pred EEecCCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchh
Q psy8199 831 IIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGET 910 (965)
Q Consensus 831 i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~ 910 (965)
++|+||+++++++++..++..+ -.+.+..|.|..||.|++..+++.+.+.++ .++|.++.+-.+.+.... |.+
T Consensus 194 iVglGesD~~~ve~~~~v~~~g---~~v~Lfaf~P~~gt~me~r~~~pve~Yrk~-q~a~yli~~G~v~~~~~~---fde 266 (339)
T COG2516 194 IVGLGESDKDIVETIKRVRKRG---GIVSLFAFTPLKGTQMENRKPPPVERYRKI-QVARYLIGNGEVDLEDFE---FDE 266 (339)
T ss_pred EeccCCchHHHHHHHHHHHhcC---ceEEEEEecccccccccCCCCCcHHHHHHH-HHHHHHHhcCccchhhcc---ccc
Confidence 9999999999999999999998 778999999999999999988666665555 677788876655544322 333
Q ss_pred hHHHHhhcCccEE--eeCCccccCCCCC----ChhhHHHHHHcCCCcch
Q psy8199 911 TQAFCFLAGANSI--FYGDKLLTTDNTK----TNDDSKLLKKLGINTRN 953 (965)
Q Consensus 911 ~~~~~l~~Gan~~--~~g~~~~t~~~~~----~~~~~~~~~~~g~~~~~ 953 (965)
...+ +. +.-.. +.-..+.|.+|.+ ..+ .|++--|+.+..
T Consensus 267 ~g~l-I~-~ip~~~ev~p~pf~t~gC~~cnRP~~n--~~~e~p~r~~~n 311 (339)
T COG2516 267 FGNL-ID-SIPKVMEVPPSPFRTRGCPGCNRPYPN--FMFELPGREPYN 311 (339)
T ss_pred ccce-ec-ccccccCCCccccccCCCCCCCCCCcc--hHhhccCCcccc
Confidence 2222 11 11111 1112355666642 222 677777776544
|
|
| >PRK07503 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.6e-12 Score=142.67 Aligned_cols=242 Identities=15% Similarity=0.153 Sum_probs=156.1
Q ss_pred CCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcC
Q psy8199 292 SNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQS 371 (965)
Q Consensus 292 ~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~ 371 (965)
..+..+...+|++.++++.+ .+..+.++||+.|+..+++... .++++||+..+.| |.+......
T Consensus 60 ~r~~~p~~~~le~~lA~l~g--~~~~i~~~sG~~Al~~~l~~ll--------~~Gd~Viv~~~~y-~~t~~~~~~----- 123 (403)
T PRK07503 60 SRISNPTLALLEQRMASLEG--GEAAVALASGMGAITATLWTLL--------RPGDEVIVDQTLY-GCTFAFLHH----- 123 (403)
T ss_pred eCCCCchHHHHHHHHHHHhC--CCcEEEEcCHHHHHHHHHHHHc--------CCCCEEEEccCcc-chHHHHHHH-----
Confidence 45677788999999999985 3557788899999999987542 3567888887766 332211100
Q ss_pred ccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHH
Q psy8199 372 FKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREI 451 (965)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l 451 (965)
........+.+++. .|++++++++. +++.+|++|. ++|++|.+.+ +++|.++
T Consensus 124 ---~~~~~G~~v~~vd~-----------------~d~~~l~~~i~---~~tklV~le~-p~NPtG~~~d----i~~I~~l 175 (403)
T PRK07503 124 ---GLGEFGVTVRHVDL-----------------TDPAALKAAIS---DKTRMVYFET-PANPNMRLVD----IAAVAEI 175 (403)
T ss_pred ---HHhhCCEEEEEeCC-----------------CCHHHHHHhcC---ccCcEEEEeC-CCCCCCeeeC----HHHHHHH
Confidence 00011112333332 25678888875 3567888887 7999998876 8999999
Q ss_pred HHhcCCeEEEeccccCCCcccccccccccCCCccee--eeccccCC-CcccceeeeecHHHHHhhhccCCcccccccCCC
Q psy8199 452 CNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL--CLSKGITG-GYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSY 528 (965)
Q Consensus 452 ~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDiv--t~sK~l~g-G~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~ 528 (965)
|+++|+++|+|++|... ..+.. .+...|++ +++|.++| |-...|++++++++++.+.... .......
T Consensus 176 a~~~gi~lIvD~a~a~~-~~~~~-----l~~g~Di~v~S~tK~l~g~gd~~gG~v~~~~~l~~~l~~~~----~~~~~g~ 245 (403)
T PRK07503 176 AHGAGAKVVVDNTYCTP-YLQRP-----LELGADLVVHSATKYLGGHGDITAGLVVGGKALADRIRLEG----LKDMTGA 245 (403)
T ss_pred HHHcCCEEEEECCCccc-ccCCc-----hhhCCCEEEccccccccCCCceeEEEEEcCHHHHHHHHhhh----HHhCcCC
Confidence 99999999999999632 22221 23346776 46899987 3245788888888877765200 1112235
Q ss_pred CCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHccc-----CCCceee----------eeceeEEEEEEEe
Q psy8199 529 SGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLI-----THPKIIN----------FRQKGMIWAFDVI 589 (965)
Q Consensus 529 ~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~-----~~~~i~~----------v~g~G~~~~i~~~ 589 (965)
..+|+.++.++..|+.+.. ..++..++..++.+.|++.. .+|+... ..+.|.++.+++.
T Consensus 246 ~~s~~~a~l~l~~L~tl~~--r~~~~~~na~~~a~~L~~~p~v~~V~~P~l~~~~~~~~~~~~~~~~g~~~s~~~~ 319 (403)
T PRK07503 246 VMSPFDAFLLMRGLKTLAL--RMDRHCASAQAVAEWLARHPAVELVHYPGLPSFAQHALAQRQMALPGGMIAFELK 319 (403)
T ss_pred CCCHHHHHHHHcCcchHHH--HHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCCCceEEEEEC
Confidence 5688888888887776532 23444566666666665431 1333211 2346888888885
|
|
| >PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.43 E-value=7.5e-12 Score=142.03 Aligned_cols=247 Identities=16% Similarity=0.184 Sum_probs=157.1
Q ss_pred cCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCc
Q psy8199 291 LSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQ 370 (965)
Q Consensus 291 ~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~ 370 (965)
+++..++...+|+++++++.+ .+.+++++||++|+.+++..+.. ++++|++..+.|++.. ......
T Consensus 52 y~r~~~pt~~~Le~~lA~l~g--~~~~l~~ssG~~Ai~~al~al~~--------~Gd~Vl~~~~~Y~~t~-~~~~~~--- 117 (425)
T PRK06084 52 YTRIMNPTNDVLEQRVAALEG--GVGALAVASGMAAITYAIQTIAE--------AGDNIVSVAKLYGGTY-NLLAHT--- 117 (425)
T ss_pred ccCCCCchHHHHHHHHHHHhC--CCceeEehhHHHHHHHHHHHHhC--------CCCEEEEeCCCcchHH-HHHHHh---
Confidence 355677788899999999985 45778899999999999987643 4678999999998642 211100
Q ss_pred CccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHH
Q psy8199 371 SFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVRE 450 (965)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~ 450 (965)
.......+.+++. .|++++++++++ ++.+|++|+ ++|++|.+.+ +++|.+
T Consensus 118 -----l~~~gi~v~~~d~-----------------~d~e~le~ai~~---~tklV~les-p~NPtG~v~d----l~~I~~ 167 (425)
T PRK06084 118 -----LPRIGIETRFAAH-----------------DDIAALEALIDE---RTKAVFCES-IGNPAGNIID----IQALAD 167 (425)
T ss_pred -----cccceeEEEEECC-----------------CCHHHHHHHhcc---CCcEEEEeC-CCCCCCeecC----HHHHHH
Confidence 0000112223322 267888888853 567888888 8999998887 899999
Q ss_pred HHHhcCCeEEEeccccCCCcccccccccccCCCccee--eeccccCCCcccceeeeec-HHH-HHhh-------hcc---
Q psy8199 451 ICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL--CLSKGITGGYLPLSLVMTT-DKI-YNSI-------YYK--- 516 (965)
Q Consensus 451 l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDiv--t~sK~l~gG~~pig~v~~~-~~i-~~~~-------~~~--- 516 (965)
+|++||+++|+|+++. .+... ......+|++ +++|.++|....+|.+++. +.+ .... ...
T Consensus 168 la~~~~i~vVvD~a~a-~~~~~-----~p~~~gaDivv~S~tK~l~G~g~~~gG~v~~~~~~~~~~~~~~~~~~~~~~~~ 241 (425)
T PRK06084 168 AAHRHGVPLIVDNTVA-TPVLC-----RPFEHGADIVVHSLTKYIGGHGTSIGGIVVDSGKFPWAEHKERFALLNTPDPS 241 (425)
T ss_pred HHHHcCCEEEEECCCc-ccccC-----ChhhcCCCEEEECchhcccccccceeEEEEeCCccchhhccccccccccCCcc
Confidence 9999999999999986 22221 2223457877 5689998744677766653 321 0000 000
Q ss_pred ----------CC-c------ccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHccc-----CCCce
Q psy8199 517 ----------NN-I------NIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLI-----THPKI 574 (965)
Q Consensus 517 ----------~~-~------~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~-----~~~~i 574 (965)
+. . .....+.....+|..++.++..|+.+.. ..++-.++..++.+.|++.. .+|++
T Consensus 242 ~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~l~~~~a~l~lrgl~tl~~--R~~~~~~na~~la~~L~~~p~v~~V~yP~l 319 (425)
T PRK06084 242 YHGVTYTEAFGPAAFIGRCRVVPLRNMGAALSPFNAFLILQGLETLAL--RMERHTENALKVARYLQQHPQVAWVKYAGL 319 (425)
T ss_pred cccchhhhhcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHcCcCcHHH--HHHHHHHHHHHHHHHHHhCCCccEEECCCC
Confidence 00 0 0001122334577777777777765532 35666777777888777542 23433
Q ss_pred ee----------eec-eeEEEEEEEe
Q psy8199 575 IN----------FRQ-KGMIWAFDVI 589 (965)
Q Consensus 575 ~~----------v~g-~G~~~~i~~~ 589 (965)
.. ..+ -|.|++|++.
T Consensus 320 ~~~p~~~~~~~~~~g~~gg~~s~~~~ 345 (425)
T PRK06084 320 PDHPEHELARRYMGGKPASILSFGIK 345 (425)
T ss_pred CCcccHHHHHHhCCCCcceEEEEEec
Confidence 21 234 5889999985
|
|
| >TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.43 E-value=7.9e-12 Score=142.32 Aligned_cols=166 Identities=14% Similarity=0.136 Sum_probs=119.7
Q ss_pred CCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcC
Q psy8199 292 SNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQS 371 (965)
Q Consensus 292 ~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~ 371 (965)
+.+.++...+|+++++++.+ .+.+++++||++|+..++..+.. ++++||+.++.|+|.... .
T Consensus 52 sr~~~p~~~~le~~lA~l~g--~~~~v~~~sG~~Ai~~al~~l~~--------~Gd~Vl~~~~~y~~t~~~-~------- 113 (418)
T TIGR01326 52 SRLMNPTTDVLEQRIAALEG--GVAALAVASGQAAITYAILNLAQ--------AGDNIVSSSYLYGGTYNL-F------- 113 (418)
T ss_pred ECCCChhHHHHHHHHHHHhC--CCeEEEEccHHHHHHHHHHHHhC--------CCCEEEEECCCcHHHHHH-H-------
Confidence 56678888999999999985 47899999999999999986643 567899999888774211 0
Q ss_pred ccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHH
Q psy8199 372 FKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREI 451 (965)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l 451 (965)
..........+.+++. .|++++++++. +++.+|++|. ++|++|.+.+ +++|.++
T Consensus 114 -~~~~~~~G~~v~~v~~-----------------~d~~~l~~~l~---~~t~~V~le~-p~NPtg~v~d----l~~I~~l 167 (418)
T TIGR01326 114 -KHTLKRLGIEVRFVDP-----------------DDPEEFEKAID---ENTKAVFAET-IGNPAINVPD----IEAIAEV 167 (418)
T ss_pred -HHHHHHcCcEEEEECC-----------------CCHHHHHHhcC---cCCeEEEEEC-CCCCCCeecC----HHHHHHH
Confidence 0001111122334332 25788888875 3567888898 8999998876 8999999
Q ss_pred HHhcCCeEEEeccccCCCcccccccccccCCCccee--eeccccCCCcccceeeeecH
Q psy8199 452 CNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL--CLSKGITGGYLPLSLVMTTD 507 (965)
Q Consensus 452 ~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDiv--t~sK~l~gG~~pig~v~~~~ 507 (965)
|++||+++|+||++. .+. ........+|++ +++|.++|..+++|++++++
T Consensus 168 a~~~~i~livD~t~~-~~~-----~~~~l~~g~Divv~S~sK~l~g~G~~lGg~v~~~ 219 (418)
T TIGR01326 168 AHAHGVPLIVDNTFA-TPY-----LCRPIDHGADIVVHSATKYIGGHGTAIGGVIVDG 219 (418)
T ss_pred HHHcCCEEEEECCCc-hhh-----cCCchhcCCeEEEECccccccCCccceEEEEEec
Confidence 999999999999985 221 122223347887 57899988448999888854
|
This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities. |
| >PRK05968 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=7.1e-12 Score=141.29 Aligned_cols=260 Identities=11% Similarity=0.018 Sum_probs=160.2
Q ss_pred CCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcC
Q psy8199 292 SNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQS 371 (965)
Q Consensus 292 ~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~ 371 (965)
..+..+...+|+++++++.+ .+..++++||+.|+..++.... .++++||+....|++.....
T Consensus 58 ~r~~~p~~~~le~~lA~l~g--~~~av~~~sG~~Ai~~al~al~--------~~Gd~Vl~~~~~y~~t~~~~-------- 119 (389)
T PRK05968 58 SRGDNPTVRAFEEMLAKLEG--AEDARGFASGMAAISSTVLSFV--------EPGDRIVAVRHVYPDAFRLF-------- 119 (389)
T ss_pred cCCCChhHHHHHHHHHHHhC--CCcEEEECCHHHHHHHHHHHHh--------CCCCEEEEeCCCchHHHHHH--------
Confidence 45667778999999999985 4566777899999998887543 25688999998887641100
Q ss_pred ccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHH
Q psy8199 372 FKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREI 451 (965)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l 451 (965)
..........+.+++. .|++++++++. ++.+|++|. +.|+.+.+ ..+++|.++
T Consensus 120 -~~~~~~~G~~v~~vd~-----------------~d~~~l~~~i~----~tklV~ie~-pt~~~~~~----~dl~~i~~l 172 (389)
T PRK05968 120 -ETILKRMGVEVDYVDG-----------------RDEEAVAKALP----GAKLLYLES-PTSWVFEL----QDVAALAAL 172 (389)
T ss_pred -HHHHHHcCceEEEeCC-----------------CCHHHHHHhcc----cCCEEEEEC-CCCCCCcH----HHHHHHHHH
Confidence 0000111112333322 25677877762 345677776 56665544 349999999
Q ss_pred HHhcCCeEEEeccccCCCcccccccccccCCCcceee--eccccCC-CcccceeeeecHHHHHhhhccCCcccccccCCC
Q psy8199 452 CNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLC--LSKGITG-GYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSY 528 (965)
Q Consensus 452 ~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt--~sK~l~g-G~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~ 528 (965)
|++||+++|+|+++..+ ..... .. .| .|+++ ++|.++| |....|++++++++++.+... ..+. .+ .
T Consensus 173 a~~~gi~vivD~a~a~~-~~~~p--~~-~g--~Divv~S~tK~l~g~~~~~gG~i~~~~~~~~~l~~~--~~~~-~g--~ 241 (389)
T PRK05968 173 AKRHGVVTMIDNSWASP-VFQRP--IT-LG--VDLVIHSASKYLGGHSDTVAGVVAGSKEHIARINAE--AYPY-LG--A 241 (389)
T ss_pred HHHcCCEEEEECCCcch-hccCc--hh-cC--CcEEEeeccccccCCCCeEEEEEEECHHHHHHHHHH--HHHh-CC--C
Confidence 99999999999998532 11111 11 23 47764 6799887 323457777888888766531 0011 12 2
Q ss_pred CCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcccCCCceeee-------------eceeEEEEEEEeecCccc
Q psy8199 529 SGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINF-------------RQKGMIWAFDVIIEDPEQ 595 (965)
Q Consensus 529 ~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v-------------~g~G~~~~i~~~~~~~~~ 595 (965)
..+|..++.++..|+.+. ...++-.++.+++.+.|++. |.+..| .+.|.++.|++. ++
T Consensus 242 ~~~~~~A~~~l~~L~tl~--~r~~~~~~~a~~la~~L~~~---p~v~~v~~p~l~~~~~~~~~g~g~~~sf~~~--~~-- 312 (389)
T PRK05968 242 KLSPFEAWLLLRGLRTLP--LRMKAHEASALEIARRLKAH---PVVERVCHPALANHPPAGLSGTSGLFSFIFR--EG-- 312 (389)
T ss_pred CCChHHHHHHHcccCcHH--HHHHHHHHHHHHHHHHHHhC---CCccEEECCCCCCChHHhCCCCceEEEEEEC--CH--
Confidence 346777777777776552 23455556677777777654 433322 255778888885 21
Q ss_pred hhhHHHHHHHHHHHcCcEEeecC
Q psy8199 596 IETFSKKFFVAALKNELLLRPIG 618 (965)
Q Consensus 596 ~~~~~~~~~~~l~~~Gi~~~~~~ 618 (965)
....+|.+.|...++.+..++
T Consensus 313 --~~~~~f~~~L~~~~~~~s~G~ 333 (389)
T PRK05968 313 --IDVRAFADALKLFRLGVSWGG 333 (389)
T ss_pred --HHHHHHHHhCCccEEecCCCC
Confidence 124467777766665554433
|
|
| >PRK07811 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.3e-11 Score=139.20 Aligned_cols=240 Identities=13% Similarity=0.110 Sum_probs=152.6
Q ss_pred CCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcC
Q psy8199 292 SNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQS 371 (965)
Q Consensus 292 ~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~ 371 (965)
..+..+...+|.++++++.+ .+..+.++||++|+..++..... ++++||+.++.|.+.........
T Consensus 56 ~r~~~p~~~~Le~~lA~~~g--~~~~i~~~sG~~Ai~~~l~all~--------~Gd~Vl~~~~~y~~t~~~~~~~~---- 121 (388)
T PRK07811 56 ARTGNPTRTALEEQLAALEG--GAYGRAFSSGMAATDCLLRAVLR--------PGDHIVIPNDAYGGTFRLIDKVF---- 121 (388)
T ss_pred cCCCCccHHHHHHHHHHHhC--CCceEEeCCHHHHHHHHHHHHhC--------CCCEEEEcCCCchHHHHHHHHhC----
Confidence 45667778899999999985 34556668899999999987643 56789999988865421110000
Q ss_pred ccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHH
Q psy8199 372 FKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREI 451 (965)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l 451 (965)
......+.+++. .|++++++++. +++.+|++|. ++|++|.+.+ +++|.++
T Consensus 122 -----~~~gi~~~~~d~-----------------~d~e~l~~~i~---~~tklV~ie~-p~NPtg~~~d----l~~I~~l 171 (388)
T PRK07811 122 -----TRWGVEYTPVDL-----------------SDLDAVRAAIT---PRTKLIWVET-PTNPLLSITD----IAALAEL 171 (388)
T ss_pred -----cCCCeEEEEeCC-----------------CCHHHHHHhcC---cCCeEEEEEC-CCCCcceecC----HHHHHHH
Confidence 001112223222 26788888875 3567888887 7899988766 9999999
Q ss_pred HHhcCCeEEEeccccCCCcccccccccccCCCcceee--eccccCC-Ccccceeeeec-HHHHHhhhccCCcccccccCC
Q psy8199 452 CNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLC--LSKGITG-GYLPLSLVMTT-DKIYNSIYYKNNINIFLHSHS 527 (965)
Q Consensus 452 ~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt--~sK~l~g-G~~pig~v~~~-~~i~~~~~~~~~~~~~~~~~t 527 (965)
|+++|+++|+||++... ..+.. .+...|+++ ++|.++| |-...|+++++ +++.+.+.. ......
T Consensus 172 a~~~gi~lIvD~a~a~~-~~~~p-----~~~gaDivv~S~sK~l~g~~~~~gG~vv~~~~~l~~~~~~------~~~~~g 239 (388)
T PRK07811 172 AHDAGAKVVVDNTFASP-YLQQP-----LALGADVVVHSTTKYIGGHSDVVGGALVTNDEELDEAFAF------LQNGAG 239 (388)
T ss_pred HHHcCCEEEEECCCCcc-ccCCc-----hhhCCcEEEecCceeecCCCCcEEEEEEECCHHHHHHHHH------HHHhcC
Confidence 99999999999998632 22221 123467774 6799986 22345777764 566554432 111222
Q ss_pred CCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHccc-----CCCcee----------eeeceeEEEEEEEe
Q psy8199 528 YSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLI-----THPKII----------NFRQKGMIWAFDVI 589 (965)
Q Consensus 528 ~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~-----~~~~i~----------~v~g~G~~~~i~~~ 589 (965)
...+|..++.++..|+.+. ...++..++...+.+.|++.. .+|++. ...|-|.|++|++.
T Consensus 240 ~~~s~~~a~l~~~~L~tl~--~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~ 314 (388)
T PRK07811 240 AVPGPFDAYLTLRGLKTLA--VRMDRHSENAEAVAEFLAGHPEVSTVLYPGLPSHPGHEVAARQMRGFGGMVSVRLA 314 (388)
T ss_pred CCCCHHHHHHHHhccCcHH--HHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCchHHHHHHhcCCCCceEEEEeC
Confidence 3345776666666665443 235556667777777776532 233321 13466889999985
|
|
| >PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.5e-11 Score=129.86 Aligned_cols=196 Identities=13% Similarity=0.190 Sum_probs=143.2
Q ss_pred cCCCCCCCCCCCCCCcCCCCcccccCCCHHHHHHHHHHHHHC---CCCEEEEeeccCCCCcccHHHHHHHHHHHHhcCcE
Q psy8199 689 TGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSD---GATRFCMGAAWRELKDRDLDNIENMICEVKKIGLE 765 (965)
Q Consensus 689 s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~---g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~~~~ 765 (965)
+.+|+++|.||..+..... ...+.++++++++++...... ....|.++|| +|+.. .+.+.++++.+++.++.
T Consensus 27 ~~gCnl~C~~C~~~~~~~~--~~~~~lt~eei~~~i~~~~~~~~~~~~~V~~sGG-EPll~--~~~~~~l~~~~k~~g~~ 101 (246)
T PRK11145 27 FQGCLMRCLYCHNRDTWDT--HGGKEVTVEELMKEVVTYRHFMNASGGGVTASGG-EAILQ--AEFVRDWFRACKKEGIH 101 (246)
T ss_pred ECCCCCcCCCCCCHHHCCC--CCCeEcCHHHHHHHHHHhHHHHhcCCCeEEEeCc-cHhcC--HHHHHHHHHHHHHcCCC
Confidence 7999999999986532111 122348999999998765432 3456888665 46443 56667888888888877
Q ss_pred eEE-ecCCC--CHHHHHHHHHhCCCeEeccCCC-CHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecC--CCHH
Q psy8199 766 TCL-TLGML--NENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLS--ESRD 839 (965)
Q Consensus 766 i~~-~~~~~--~~e~l~~Lk~aG~~~i~i~~es-~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~--et~e 839 (965)
+++ ++|.+ ..+.++.+.+ .+|.+.+++++ +++.++++.+. +.+..++.++.+.+.|+++...+++..| ++.+
T Consensus 102 i~l~TNG~~~~~~~~~~~ll~-~~d~v~islk~~~~e~~~~~~g~-~~~~~l~~i~~l~~~g~~v~i~~~li~g~nd~~~ 179 (246)
T PRK11145 102 TCLDTNGFVRRYDPVIDELLD-VTDLVMLDLKQMNDEIHQNLVGV-SNHRTLEFARYLAKRNQKTWIRYVVVPGWTDDDD 179 (246)
T ss_pred EEEECCCCCCcchHHHHHHHH-hCCEEEECCCcCChhhcccccCC-ChHHHHHHHHHHHhCCCcEEEEEEEECCCCCCHH
Confidence 655 45665 3578888776 48999999999 89999988764 4578889999999999977766666554 7778
Q ss_pred HHHHHHHHHHhcCCCCCceeeccccccCCC---------CCCCCCCCCHHHHHHHHHHHHHH
Q psy8199 840 QRAELIFQLANLNPYPESVPINNLVQIKGT---------PLYGSSILDPLEFIRTIAVARIT 892 (965)
Q Consensus 840 d~~~~l~~l~~l~~~~~~i~~~~~~P~~gT---------~l~~~~~~~~~~~~~~ia~~R~~ 892 (965)
++.+.++++++++. ...+.+.+|.|.++. ++.+.++++.+++.++..+++..
T Consensus 180 ei~~l~~~l~~l~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~~ 240 (246)
T PRK11145 180 SAHRLGEFIKDMGN-IEKIELLPYHELGKHKWEAMGEEYKLDGVKPPSKETMERVKGILEQY 240 (246)
T ss_pred HHHHHHHHHHhcCC-cceEEEecCCccchhHHHHcCCcccccCCCCCCHHHHHHHHHHHHHc
Confidence 99999999998851 456777788776543 44456778888888877777654
|
|
| >TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial | Back alignment and domain information |
|---|
Probab=99.43 E-value=1e-11 Score=138.77 Aligned_cols=265 Identities=13% Similarity=0.081 Sum_probs=165.5
Q ss_pred CCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcC
Q psy8199 292 SNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQS 371 (965)
Q Consensus 292 ~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~ 371 (965)
++..++....|+++++++.+ .+.+++++||++|+..++.... .++++||+.++.|+++.......
T Consensus 45 ~r~gnPt~~~lE~~lA~l~g--~~~~~~~~sG~~Ai~~al~all--------~~GD~Vl~~~~~y~~t~~~~~~~----- 109 (377)
T TIGR01324 45 GRRGTLTHFALQDAMCELEG--GAGCYLYPSGLAAVTNSILAFV--------KAGDHVLMVDSAYEPTRYFCDIV----- 109 (377)
T ss_pred cCCCCccHHHHHHHHHHHhC--CCcEEEECcHHHHHHHHHHHhc--------CCCCEEEEcCCCcHHHHHHHHHH-----
Confidence 34567788899999999985 5789999999999999998653 35788999999998753211000
Q ss_pred ccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHH
Q psy8199 372 FKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREI 451 (965)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l 451 (965)
.......+.++.. .+.+++++++. +++.+|++|. +.|++|.+.+ +++|.++
T Consensus 110 ----~~~~gi~v~~~d~-----------------~~~e~l~~~i~---~~tklV~les-p~Np~g~~~d----l~~I~~l 160 (377)
T TIGR01324 110 ----LKRMGVDITYYDP-----------------LIGEDIATLIQ---PNTKVLFLEA-PSSITFEIQD----IPAIAKA 160 (377)
T ss_pred ----HHhcCcEEEEECC-----------------CCHHHHHHhcC---CCceEEEEEC-CCCCCCcHHH----HHHHHHH
Confidence 0001111222211 11256777764 4578899998 7888887765 9999999
Q ss_pred HHhcCCeEEEeccccCCCcccccccccccCCCcceee--eccccCCC-cccceeeeecHHHHHhhhccCCcccccccCCC
Q psy8199 452 CNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLC--LSKGITGG-YLPLSLVMTTDKIYNSIYYKNNINIFLHSHSY 528 (965)
Q Consensus 452 ~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt--~sK~l~gG-~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~ 528 (965)
|+++|+++|+|++|. .|..... .....|+++ ++|.++|. -.-.|+++++++.++.+.. .......
T Consensus 161 a~~~g~~livD~t~a-~g~~~~p-----l~~gaDivv~S~tK~l~G~~d~~gG~v~~~~~~~~~l~~------~~~~~G~ 228 (377)
T TIGR01324 161 ARNPGIVIMIDNTWA-AGLLFKP-----LEHGVDISIQAGTKYLVGHSDIMIGTVVANARTWDQLRE------HSYLMGQ 228 (377)
T ss_pred HHHcCCEEEEECCCc-cccccCc-----cccCceEEEecCceeccCCCCceEEEEEeCHHHHHHHHH------HHHHhCC
Confidence 999999999999996 3333221 233568876 47998762 1345778888877665543 1111223
Q ss_pred CCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHccc-----CCCceee----------eeceeEEEEEEEeecCc
Q psy8199 529 SGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLI-----THPKIIN----------FRQKGMIWAFDVIIEDP 593 (965)
Q Consensus 529 ~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~-----~~~~i~~----------v~g~G~~~~i~~~~~~~ 593 (965)
..+|..+...+..|+.+.- ..++..++..++.+.|++-. .+|++.. ..+-|.|+.|++. ...
T Consensus 229 ~l~p~~a~~~~rgl~tl~~--R~~~~~~~a~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~~~g~~~s~~l~-~~~ 305 (377)
T TIGR01324 229 MVDADDAYTTLRGLRTLGV--RLKQHQESSLAIAKWLSEQPEVARVLHPALPSCPGHEFWKRDFSGSSGLFSFVLQ-RLT 305 (377)
T ss_pred CCCHHHHHHHHhhhhhHHH--HHHHHHHHHHHHHHHHHhCCCcCEEECCCCCCCccHHHHHHhccCCCceEEEEEC-CCC
Confidence 3467777777777765532 24555556566666665431 2343221 2366889999985 211
Q ss_pred cchhhHHHHHHHHHHHcCcEEeecC
Q psy8199 594 EQIETFSKKFFVAALKNELLLRPIG 618 (965)
Q Consensus 594 ~~~~~~~~~~~~~l~~~Gi~~~~~~ 618 (965)
...+.+|.+.|.-.++.+.-++
T Consensus 306 ---~~~~~~~~~~l~~~~~~~slG~ 327 (377)
T TIGR01324 306 ---QKQVHAFLDHLQLFGLGYSWGG 327 (377)
T ss_pred ---HHHHHHHHHhCCcceEeccCCC
Confidence 2224456666654454444333
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >PRK08574 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.4e-11 Score=138.49 Aligned_cols=239 Identities=14% Similarity=0.131 Sum_probs=154.6
Q ss_pred CCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcC
Q psy8199 292 SNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQS 371 (965)
Q Consensus 292 ~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~ 371 (965)
.++.++...+|+++++++.+ .+.++.++||+.|+..++.... .++++|++..+.|++.......+ .
T Consensus 48 ~r~~np~~~~lE~~lA~l~g--~~~~l~~~sG~~Ai~~~l~~ll--------~~GD~Vlv~~~~y~~~~~~~~~~-~--- 113 (385)
T PRK08574 48 SREENPTLRPLEEALAKLEG--GVDALAFNSGMAAISTLFFSLL--------KAGDRVVLPMEAYGTTLRLLKSL-E--- 113 (385)
T ss_pred ECCCCccHHHHHHHHHHHhC--CCcEEEeCCHHHHHHHHHHHHh--------CCCCEEEEcCCCchhHHHHHHHh-h---
Confidence 45677888899999999985 4678888999999999987653 25688999988887653211111 0
Q ss_pred ccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHH
Q psy8199 372 FKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREI 451 (965)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l 451 (965)
.....+.++. .|++++++++.+ .++.+|++|. ++|++|.+.+ +++|.++
T Consensus 114 ------~~g~~v~~~~------------------~d~~~l~~~i~~--~~tklV~ie~-p~NPtG~v~d----l~~I~~l 162 (385)
T PRK08574 114 ------KFGVKVVLAY------------------PSTEDIIEAIKE--GRTKLVFIET-MTNPTLKVID----VPEVAKA 162 (385)
T ss_pred ------ccCcEEEEEC------------------CCHHHHHHhcCc--cCceEEEEEC-CCCCCCEecC----HHHHHHH
Confidence 0001111211 145778887752 2567888888 8999998887 8899999
Q ss_pred HHhcCCeEEEeccccCCCcccccccccccCCCccee--eeccccCCCcccc-eeeee-cHHHHHhhhccCCcccccccCC
Q psy8199 452 CNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL--CLSKGITGGYLPL-SLVMT-TDKIYNSIYYKNNINIFLHSHS 527 (965)
Q Consensus 452 ~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDiv--t~sK~l~gG~~pi-g~v~~-~~~i~~~~~~~~~~~~~~~~~t 527 (965)
|+++|+++|+|+++. .+-.... . ..| .|++ +++|.++|..-.+ |++++ ++++++.+.. +....+
T Consensus 163 a~~~gi~livD~t~a-~~~~~~~--l-~~G--aDivv~S~sK~l~g~~d~~gG~vi~~~~~~~~~~~~------~~~~~g 230 (385)
T PRK08574 163 AKELGAILVVDNTFA-TPLLYRP--L-RHG--ADFVVHSLTKYIAGHNDVVGGVAVAWSGEFLEELWE------WRRRLG 230 (385)
T ss_pred HHHcCCEEEEECCCC-ccccCCh--h-hhC--CcEEEeeCceeecCCCCceeEEEEECcHHHHHHHHH------HHHhcC
Confidence 999999999999984 2211111 1 123 5776 4689997621233 53444 6777766543 111123
Q ss_pred CCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHccc-----CCCceee----------e--eceeEEEEEEEe
Q psy8199 528 YSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLI-----THPKIIN----------F--RQKGMIWAFDVI 589 (965)
Q Consensus 528 ~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~-----~~~~i~~----------v--~g~G~~~~i~~~ 589 (965)
...+|..++.++..|+.+.. ..++..++..++.+.|+... .+|++.. . .|-|.|+.|++.
T Consensus 231 ~~~~p~~a~l~l~~l~tL~~--R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~~~g~g~~~s~~l~ 307 (385)
T PRK08574 231 TIMQPFEAYLVLRGLKTLEV--RFERQCRNAMAIAEFLSEHPKVAEVYYPGLPSDPYHGVAKRLFGKDLYGGVVSFRVK 307 (385)
T ss_pred CCCCHHHHHHHHcccCcHHH--HHHHHHHHHHHHHHHHHcCCCcCEEECCCCCCCchHHHHHHhCCCCCcceEEEEEeC
Confidence 34568878888777776542 35555667777777776532 2344321 1 257889999985
|
|
| >PLN03226 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.5e-11 Score=136.32 Aligned_cols=335 Identities=12% Similarity=0.009 Sum_probs=187.1
Q ss_pred ccccccccchhccCCCCCHHHHHHHHHHH-hhcccc-ccCC---C--CcHHHHHHHHH-HHhhcCCCCCeEEE---cCCh
Q psy8199 255 RYLDAISSWWVNLFGHSNSYINKALKNQL-NKLEHV-MLSN---L--THKPVIKLSEK-LSSLTQYKLGHCFY---GSDG 323 (965)
Q Consensus 255 ~ylD~~~~~~~~~lGh~~p~v~~av~~~~-~~~~~~-~~~~---~--~~~~~~~la~~-l~~~~~~~~~~v~~---~~sG 323 (965)
+-|.++++- .+..|.+.+|+...+ .++... .... + ..+..++++.. ..+.++...+.+.+ .+||
T Consensus 35 ~~l~liase-----n~~s~~v~~a~~s~~~~ky~~G~~g~r~~~G~~~~d~lE~~~~~~~~~~f~~~~~~~~~nv~~~SG 109 (475)
T PLN03226 35 KGLELIASE-----NFTSRAVMEALGSCLTNKYSEGLPGARYYGGNEYIDQIETLCQKRALEAFRLDPEKWGVNVQPLSG 109 (475)
T ss_pred cCeeEecCC-----ccCCHHHHHHHhhHHhccccCCCCCCcCcCCChhHHHHHHHHHHHHHHHhCCCcceeEEecCcCch
Confidence 455655542 235799999998888 443211 1011 1 22333444443 44556433333333 4899
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCceEEEEEcC-----CccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCC
Q psy8199 324 ASAVEVALKMSFHYWYNKGFLNKKKFICLQN-----SYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGN 398 (965)
Q Consensus 324 seA~~~Al~~a~~~~~~~g~~~~~~vi~~~~-----~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (965)
+.||.+++....+ ++++|+..+- -.|++......++.... ....++++....
T Consensus 110 ~~AN~av~~aL~~--------pgD~Il~~d~~~gGhl~H~~~~~g~~~s~~~~----------~~~~~~y~~~~~----- 166 (475)
T PLN03226 110 SPANFAVYTALLQ--------PHDRIMGLDLPHGGHLSHGYQTDGKKISATSI----------YFESMPYRLDES----- 166 (475)
T ss_pred HHHHHHHHHHhCC--------CCCEEEECCCCcCcchhhhhhhcccccccceE----------EEEeeeeeecCC-----
Confidence 9999999987743 6688888553 22443222222221100 001112211000
Q ss_pred ChhHHHHHHHHHHHHHHHhCCCcEEEEEE-ccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccc
Q psy8199 399 SANEIARCAIFDLEILLKKNHNKIAAIII-EPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFAC 477 (965)
Q Consensus 399 ~~~~~~~~d~~~le~~l~~~~~~~aaii~-ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~ 477 (965)
-...|+++|++++.+... ..|++ ++ + .|...+ +++|+++|+++|+++++|++|. +|-.+.....
T Consensus 167 ----~g~iD~d~Le~~l~~~~p--klIv~~~S-~---~s~~~D----~a~i~~ia~~~ga~LlvD~AH~-~Gli~~~~~~ 231 (475)
T PLN03226 167 ----TGLIDYDKLEKKAMLFRP--KLIIAGAS-A---YPRDWD----YARMRKIADKVGALLMCDMAHI-SGLVAAQEAA 231 (475)
T ss_pred ----CCCcCHHHHHHHHhhcCC--eEEEEecC-c---CCCccC----HHHHHHHHHHcCCEEEEEchhh-hCcccCCCCC
Confidence 001378999998865432 33444 55 3 344444 7789999999999999999996 6555432211
Q ss_pred cccCCCcceee--eccccCCCcccceeeeecHHHH-----------HhhhccCCcccccccCCCCCCHHHHHHHHHHHHH
Q psy8199 478 EHAEIWPDFLC--LSKGITGGYLPLSLVMTTDKIY-----------NSIYYKNNINIFLHSHSYSGNPLACCAALATLEI 544 (965)
Q Consensus 478 ~~~~~~pDivt--~sK~l~gG~~pig~v~~~~~i~-----------~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~ 544 (965)
..++ ..|+++ ++|+|.|. +-|++++++++. +....-.... ..+.+-+.++..+++..++|+.
T Consensus 232 ~p~~-~~Div~~t~hK~L~GP--~Gg~I~~~~~~~~~~~~g~~~~~d~~~~i~~a~--~~~~~g~p~~~~iaal~aAl~~ 306 (475)
T PLN03226 232 SPFE-YCDVVTTTTHKSLRGP--RGGMIFFRKGPKPPKGQGEGAVYDYEDKINFAV--FPGLQGGPHNHTIAALAVALKQ 306 (475)
T ss_pred CCCC-CCeEEEecCcccccCC--CceEEEEchhhcccccCCCccHHHHHHHhcccc--CCccCCCchHHHHHHHHHHHHH
Confidence 1122 478774 67999773 235666776544 2210000111 1122223456677778888998
Q ss_pred Hhccc---HHHHHHHHHHHHHHHHHcccCCCceeeeec--eeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec--
Q psy8199 545 FNKDN---ILQRISQDMKKITKALTSLITHPKIINFRQ--KGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-- 617 (965)
Q Consensus 545 ~~~~~---~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g--~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-- 617 (965)
+.+.+ +.+++.++.++|.+.|.+. ++.-+.+ ...+..+++. ..+ -...++.+.|.+.||++..+
T Consensus 307 i~~~~~~~~~~~~~~na~~L~~~L~~~----G~~l~~~~t~~hi~lv~~~-~~g----i~~~~~~~~L~~~~I~~nk~~~ 377 (475)
T PLN03226 307 AMTPEFKAYQKQVKANAAALANRLMSK----GYKLVTGGTDNHLVLWDLR-PLG----LTGSRVEKVLDLAHITLNKNAV 377 (475)
T ss_pred HhCcCHHHHHHHHHHHHHHHHHHHHhC----CCEEEcCCCCCCEEEEEcc-CCC----CCHHHHHHHHHHCCCEECCCCC
Confidence 86543 5788899999999988764 3332221 2355666663 111 01234667788899988532
Q ss_pred --------CCEEEE----eCCcccCHHHHHHHHHhhhcccc
Q psy8199 618 --------GNTVYL----MPPYILNKNEIQHMTSAIFQTFN 646 (965)
Q Consensus 618 --------~~~lR~----~p~~~~t~~~i~~~~~~l~~~~~ 646 (965)
...+|+ .....+++++++++.+.+.+++.
T Consensus 378 p~~~~~~~~~giRiGt~~lt~~g~~~~d~~~ia~~i~~~~~ 418 (475)
T PLN03226 378 PGDSSALVPGGVRIGTPAMTSRGLVEKDFEKVAEFLHRAVT 418 (475)
T ss_pred CCCcccCCCCCcccCcHHHHHCCCCHHHHHHHHHHHHHHHH
Confidence 245887 44566788899988888766554
|
|
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.6e-11 Score=141.98 Aligned_cols=314 Identities=13% Similarity=0.114 Sum_probs=190.8
Q ss_pred CCcHHHHHHHHHHHhhcCCCCCeEEEcC-ChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCc
Q psy8199 294 LTHKPVIKLSEKLSSLTQYKLGHCFYGS-DGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSF 372 (965)
Q Consensus 294 ~~~~~~~~la~~l~~~~~~~~~~v~~~~-sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~ 372 (965)
+.-+...++.+.+++++ +.+.+.+-+ ||+.|..+++.+.|.|+..+|+++|+++++.. +-||+........|
T Consensus 540 G~lq~i~elq~~l~eLt--Gmd~~Sl~p~sGA~gE~A~Lmair~yh~~~Ge~~r~~vLIp~-saHgtNpasa~~~G---- 612 (954)
T PRK12566 540 GYRAMIDELEAWLCAIT--GFDAICMQPNSGAQGEYAGLLAIRRYHRSRGQSQRDICLIPS-SAHGTNPASAQMAG---- 612 (954)
T ss_pred CHHHHHHHHHHHHHHHH--CCCeEeecCCchHHHHHHHHHHHHHHHHhcCCCCCCEEEecc-cccccCHHHHHHCC----
Confidence 34455678999999999 567666655 89999989999999999999998887766655 77777543322211
Q ss_pred cchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHH
Q psy8199 373 KEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREIC 452 (965)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~ 452 (965)
..++.+|... .+. .|+++|+++++++.+++++|++.- + +..|.+. .-+++|.++|
T Consensus 613 --------ieVv~Vp~D~-~G~-----------iDle~L~a~I~~~~~~laaVmiT~-P-nt~Gv~e---~~V~eI~~ia 667 (954)
T PRK12566 613 --------MRVVIVECDP-DGN-----------VDLDDLKAKAAAAGDRLSCLMITY-P-STHGVYE---EGIREICEVV 667 (954)
T ss_pred --------CEEEEeccCC-CCC-----------cCHHHHHHHhhccCCCEEEEEEEe-c-CcCceec---chHHHHHHHH
Confidence 2344444421 111 489999999976667888888865 2 3344332 2289999999
Q ss_pred HhcCCeEEEeccccCCCcccccccccc-cCCCcceeeec--ccc----CCCcccceeeeecHHHHHhhhccC-----C--
Q psy8199 453 NNYNIHLIADEIAVGCGRTGKFFACEH-AEIWPDFLCLS--KGI----TGGYLPLSLVMTTDKIYNSIYYKN-----N-- 518 (965)
Q Consensus 453 ~~~g~llI~DEv~tg~gr~G~~~~~~~-~~~~pDivt~s--K~l----~gG~~pig~v~~~~~i~~~~~~~~-----~-- 518 (965)
+++|+++++|-++. .+-. .... -.+..|+++++ |.+ ++|+.-+|.+.+++++...+.... .
T Consensus 668 h~~Galv~vDgA~~-~a~~----~l~~Pg~~GADi~~~s~HKtf~~P~G~GGP~vG~iav~~~L~pfLp~~P~~d~~G~~ 742 (954)
T PRK12566 668 HQHGGQVYMDGANL-NAQV----GLARPADIGADVSHMNLHKTFCIPHGGGGPGMGPIGVRAHLAPFVANHPVVPVEGPD 742 (954)
T ss_pred HHcCCEEEEEeeCh-hhcc----CCCChhhcCCCEEEecCCcccCcCccCCCCccchhhhhhhhhhhccCCCCcCCCCCC
Confidence 99999999999885 2211 1111 13456998876 855 345445677777776665554311 0
Q ss_pred cccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHH----HHHHHHHHHHHHcccCCCceeeeec-eeE-E--EEEEEee
Q psy8199 519 INIFLHSHSYSGNPLACCAALATLEIFNKDNILQRI----SQDMKKITKALTSLITHPKIINFRQ-KGM-I--WAFDVII 590 (965)
Q Consensus 519 ~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~----~~~~~~l~~~L~~l~~~~~i~~v~g-~G~-~--~~i~~~~ 590 (965)
.+....+....++.+...++..-++.+-.+ +.++ ..+..++.++|.+... +.. .+ .+. + +.+.+.
T Consensus 743 ~r~ga~S~~~~gsa~~l~~A~~Yi~~lG~e--Lk~aa~~ailnAnYla~rL~~~~~---v~~-~~~~~~~~hEfii~~~- 815 (954)
T PRK12566 743 PNNGAVSAAPWGSASILPISWMYIAMMGPQ--LADASEVAILSANYLANQLGGAFP---VLY-RGRNERVAHECILDLR- 815 (954)
T ss_pred CCCCceeecccchHHHHHHHHHHHHHHCHH--HHHHHHHHHHHHHHHHHHhHhhCC---CCc-CCCCCCeeeEEEEEcc-
Confidence 000111122233333334444444444433 3332 3477788888865311 111 11 111 1 222221
Q ss_pred cCccchhhHHHHHHHHHHHcCcEEe----ecCCEEEEeCCcccCHHHHHHHHHhhhcccccHHHH
Q psy8199 591 EDPEQIETFSKKFFVAALKNELLLR----PIGNTVYLMPPYILNKNEIQHMTSAIFQTFNELDEV 651 (965)
Q Consensus 591 ~~~~~~~~~~~~~~~~l~~~Gi~~~----~~~~~lR~~p~~~~t~~~i~~~~~~l~~~~~~~~e~ 651 (965)
.-..........+.++|.+.|+... |..+.+|++|....+.+++|++++++.....+.++.
T Consensus 816 ~l~~~~g~~~~dvakRL~d~Gihapt~~fPv~~~LmIepTE~eskeEIDrf~eAL~~I~~e~~~v 880 (954)
T PRK12566 816 PLKAQTGISEEDVAKRLMDYGFHAPTMSFPVPGTLMVEPTESESKAELDRFVEAMLSIRAEIGKV 880 (954)
T ss_pred ccccccCCCHHHHHHHHHHCCcEEeEEeeccCCEEEEEeeeeCCHHHHHHHHHHHHHHHHHHHHH
Confidence 0000001113458888889888654 446799999999999999999999998776655443
|
|
| >PRK07050 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.8e-11 Score=137.94 Aligned_cols=263 Identities=12% Similarity=0.065 Sum_probs=157.2
Q ss_pred cCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCc
Q psy8199 291 LSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQ 370 (965)
Q Consensus 291 ~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~ 370 (965)
++.+.++...+|+++++++.+ .+.+++++||++|+..++.... .++++||+.++.|.++......
T Consensus 59 Y~r~~~pt~~~Le~~lA~l~g--~~~~l~~~sgt~Ai~~~l~al~--------~~GD~Vl~~~~~y~~~~~~~~~----- 123 (394)
T PRK07050 59 YGLHATPTSLALAQRLAEIEG--GRHALLQPSGLAAISLVYFGLV--------KAGDDVLIPDNAYGPNRDHGEW----- 123 (394)
T ss_pred cCCCCCHHHHHHHHHHHHHhC--CCeEEEeccHHHHHHHHHHHHh--------CCCCEEEEecCCcccHHHHHHH-----
Confidence 356788888999999999985 5799999999999999998663 3678999999999765311000
Q ss_pred CccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHH
Q psy8199 371 SFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVRE 450 (965)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~ 450 (965)
........+.+++.. +.+++++++. +++.+|++|. +.|++|... .+++|.+
T Consensus 124 ----~~~~~Gi~v~~vd~~-----------------~~~~l~~~i~---~~tklV~le~-p~Np~~~~~----di~~I~~ 174 (394)
T PRK07050 124 ----LARDFGITVRFYDPL-----------------IGAGIADLIQ---PNTRLIWLEA-PGSVTMEVP----DVPAITA 174 (394)
T ss_pred ----HHHhcCeEEEEECCC-----------------CHHHHHHhcC---CCCeEEEEEC-CCCCCccHh----hHHHHHH
Confidence 000111122333211 2356777764 3567788887 678776544 4999999
Q ss_pred HHHhcCCeEEEeccccCCCcccccccccccCCCccee--eeccccCCC-cccceeeee-cHHHHHhhhccCCcccccccC
Q psy8199 451 ICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL--CLSKGITGG-YLPLSLVMT-TDKIYNSIYYKNNINIFLHSH 526 (965)
Q Consensus 451 l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDiv--t~sK~l~gG-~~pig~v~~-~~~i~~~~~~~~~~~~~~~~~ 526 (965)
+|+++|+++|+|++|. .+-. +.-.....|++ +++|.++|| -.+.|++++ ++++++.+.. .....
T Consensus 175 ia~~~gi~livD~a~a-~~~~-----~~~l~~GaDi~v~S~tK~~~g~~~~~gG~v~~~~~~~~~~~~~------~~~~~ 242 (394)
T PRK07050 175 AARARGVVTAIDNTYS-AGLA-----FKPFEHGVDISVQALTKYQSGGSDVLMGATITADAELHAKLKL------ARMRL 242 (394)
T ss_pred HHHHcCCEEEEECCcc-cccc-----cCHHHcCCeEEEEECCceecCCCCeeEEEEEECCHHHHHHHHH------HHHhc
Confidence 9999999999999986 2211 11112234766 578998764 245777776 5677776643 11111
Q ss_pred CCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHccc-----CCCcee----------eeeceeEEEEEEEeec
Q psy8199 527 SYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLI-----THPKII----------NFRQKGMIWAFDVIIE 591 (965)
Q Consensus 527 t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~-----~~~~i~----------~v~g~G~~~~i~~~~~ 591 (965)
+.+.+|..+..++..|+.+.. -+++..++..++.+.|++.. .+|++. ...+-|.++.|++. .
T Consensus 243 G~~~~~~~a~l~lr~l~tl~~--Rl~~~~~~a~~la~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~~~g~~~s~~l~-~ 319 (394)
T PRK07050 243 GIGVSADDCSLVLRGLPSLQV--RLAAHDRSALEVAEWLKARPEIATVLHPALPDCPGHAFWMRDFTGAGGLFSVVFD-E 319 (394)
T ss_pred CCCCCHHHHHHHHcCCCcHHH--HHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEEC-C
Confidence 224456655555443432221 24445555666666665431 123221 12355778888875 2
Q ss_pred CccchhhHHHHHHHHHHHcCcEE
Q psy8199 592 DPEQIETFSKKFFVAALKNELLL 614 (965)
Q Consensus 592 ~~~~~~~~~~~~~~~l~~~Gi~~ 614 (965)
+. ......++.+.|...++-+
T Consensus 320 ~~--~~~~~~~~~~~l~~~~~~~ 340 (394)
T PRK07050 320 RY--SPAQVDAFVEALELFAIGW 340 (394)
T ss_pred CC--CHHHHHHHHHcCCCCeecc
Confidence 10 1122445666666555433
|
|
| >PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.1e-11 Score=138.76 Aligned_cols=245 Identities=15% Similarity=0.182 Sum_probs=154.6
Q ss_pred CCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcC
Q psy8199 292 SNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQS 371 (965)
Q Consensus 292 ~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~ 371 (965)
.+..++...+|+++++++.+ .+.+++++||+.|+.++++.+.. ++++||+....|+|.....
T Consensus 58 ~r~~~p~~~~le~~lA~l~g--~~~al~~~SG~~Ai~~al~all~--------pGd~VIv~~~~y~~t~~~~-------- 119 (427)
T PRK05994 58 TRITNPTNAVLEERVAALEG--GTAALAVASGHAAQFLVFHTLLQ--------PGDEFIAARKLYGGSINQF-------- 119 (427)
T ss_pred ECCCCccHHHHHHHHHHHhC--CCcEEEEcCHHHHHHHHHHHHhC--------CCCEEEEecCcchhHHHHH--------
Confidence 34556778899999999985 45688999999999999987643 5688999999997752110
Q ss_pred ccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHH
Q psy8199 372 FKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREI 451 (965)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l 451 (965)
..........+.+++. .|++++++++. +++++|++|. ++|++|.+.+ +++|.++
T Consensus 120 -~~~~~~~G~~v~~vd~-----------------~d~~~l~~ai~---~~tklV~ves-p~NptG~v~d----l~~I~~l 173 (427)
T PRK05994 120 -GHAFKSFGWQVRWADA-----------------DDPASFERAIT---PRTKAIFIES-IANPGGTVTD----IAAIAEV 173 (427)
T ss_pred -HHHHHhcCcEEEEECC-----------------CCHHHHHHhcC---cCCeEEEEEC-CCCCCCeecC----HHHHHHH
Confidence 0001111122333332 25678888875 3578888898 8999998887 8999999
Q ss_pred HHhcCCeEEEeccccCCCcccccccccccCCCcceee--eccccCCCcccceeeeec-HH--------------------
Q psy8199 452 CNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLC--LSKGITGGYLPLSLVMTT-DK-------------------- 508 (965)
Q Consensus 452 ~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt--~sK~l~gG~~pig~v~~~-~~-------------------- 508 (965)
|++||+++|+|++++. +. ...-+...+|+++ ++|.++|-.-++|.++.. ..
T Consensus 174 a~~~gi~livD~a~a~-~~-----~~~pl~~gaDivv~S~tK~lgg~~~~~gG~v~~~~~~~~~~~k~~~~~~~~~~~~~ 247 (427)
T PRK05994 174 AHRAGLPLIVDNTLAS-PY-----LIRPIEHGADIVVHSLTKFLGGHGNSMGGIIVDGGTFDWSKSGKYPMLSEPRPEYH 247 (427)
T ss_pred HHHcCCEEEEECCccc-cc-----cCCccccCCcEEEEcCccccCCCCCcEEEEEEeCCccccccccccccccCCcchhh
Confidence 9999999999999862 11 2233345689886 679887622356655542 21
Q ss_pred ---HHHhhh---cc--CCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHccc-----CCCcee
Q psy8199 509 ---IYNSIY---YK--NNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLI-----THPKII 575 (965)
Q Consensus 509 ---i~~~~~---~~--~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~-----~~~~i~ 575 (965)
+.+.+. .. .... .........+|..++.++.-|+.+. ...++-.++..++.+.|++.. .+|++.
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~-~~~~~G~~~~~~~A~l~~~~l~tL~--~r~~~~~~~a~~la~~L~~~p~v~~v~yP~l~ 324 (427)
T PRK05994 248 GLVLHETFGNFAFAIAARVL-GLRDLGPAISPFNAFLILTGIETLP--LRMQRHSDNALAVAEWLKGHPKVSWVNYAGLP 324 (427)
T ss_pred hhhHHHHhhhhhhHHHHHHH-HHHhcCCCCCHHHHHHHHcCcccHH--HHHHHHHHHHHHHHHHHHhCCCccEEECCCCC
Confidence 111000 00 0000 0001112356777777777666553 235666777778888776542 234332
Q ss_pred e-----------eeceeEEEEEEEe
Q psy8199 576 N-----------FRQKGMIWAFDVI 589 (965)
Q Consensus 576 ~-----------v~g~G~~~~i~~~ 589 (965)
. ..|-|.+++|++.
T Consensus 325 ~~~~~~~~~~~~~~g~g~~~sf~l~ 349 (427)
T PRK05994 325 DDPYHALAQKYSPKGAGAVFTFGLK 349 (427)
T ss_pred CCccHHHHHHhcCCCceEEEEEEec
Confidence 1 2467889999985
|
|
| >KOG2672|consensus | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.3e-12 Score=125.81 Aligned_cols=194 Identities=22% Similarity=0.341 Sum_probs=152.1
Q ss_pred EEEeEeEeeccCCCCCCCCCCCCCCcCCCCcccccCCCHHHHHHHHHHHHHCCCCEEEEeeccC-CCCcccHHHHHHHHH
Q psy8199 679 IELAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWR-ELKDRDLDNIENMIC 757 (965)
Q Consensus 679 ~~~~~~i~~~s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~l~~g~~-~~~~~~~~~~~~~~~ 757 (965)
..-.+++-. ..-|..+|+||+......+. .+++-|-...++.+++.|...|.|++... ++++...+.|.+.++
T Consensus 109 ~ATATIMlm-GDTCTRGCRFCsVKTsR~Pp-----PlDp~EPeNTAeAIasWgl~YiVlTSVDRDDlpDgGa~HiAkTVq 182 (360)
T KOG2672|consen 109 TATATIMLM-GDTCTRGCRFCSVKTSRNPP-----PLDPNEPENTAEAIASWGLDYIVLTSVDRDDLPDGGANHIAKTVQ 182 (360)
T ss_pred ceeEEEEee-cCccccCcceeeeecCCCCc-----CCCCCCcccHHHHHHHcCCCeEEEEecccccCcCcchHHHHHHHH
Confidence 334456666 89999999999977532222 36666667777778889999999999876 667788999999999
Q ss_pred HHHhcCcEe---EEecCCC-CHHHHHHHHHhCCCeEeccCCCCHHHHhcccC-CCCHHHHHHHHHHHHHc--CCceeeeE
Q psy8199 758 EVKKIGLET---CLTLGML-NENQAYRLKKVGLDYYNHNLDTSPKLYGDIIS-TRDYENRLNTLKNVRNV--GINICCGG 830 (965)
Q Consensus 758 ~i~~~~~~i---~~~~~~~-~~e~l~~Lk~aG~~~i~i~~es~~~~~~~i~~-~~~~~~~~~~i~~~~~~--Gi~v~~~~ 830 (965)
.||+..+++ ++.+... +.+.++.+...|+|.+.+++||.+++-..++. ..+|.+-+..++.+++. ++-..+.+
T Consensus 183 ~iK~k~p~ilvE~L~pDF~Gd~~~Ve~va~SGLDV~AHNvETVe~Ltp~VRD~RA~yrQSL~VLk~aK~~~P~litktsi 262 (360)
T KOG2672|consen 183 KIKEKAPEILVECLTPDFRGDLKAVEKVAKSGLDVYAHNVETVEELTPFVRDPRANYRQSLSVLKHAKEVKPGLITKTSI 262 (360)
T ss_pred HHHhhCcccchhhcCccccCchHHHHHHHhcCccceecchhhHHhcchhhcCcccchHHhHHHHHHHHhhCCCceehhhh
Confidence 999866555 3333333 77889999999999999999998888888875 45899999999999984 46667889
Q ss_pred EEecCCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCCCCCCCHH
Q psy8199 831 IIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPL 880 (965)
Q Consensus 831 i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~~~~~~~~ 880 (965)
|.|+|||+|++..+++.+++.+ .+.+.+..|++.-.--+.-..-.+++
T Consensus 263 Mlglgetdeei~~tl~dLr~~~--vdv~t~gqym~ptkrhl~v~eyvtpe 310 (360)
T KOG2672|consen 263 MLGLGETDEEIKQTLKDLRAAD--VDVVTFGQYMQPTKRHLKVKEYVTPE 310 (360)
T ss_pred hhccCCCHHHHHHHHHHHHHcC--CcEEecccccCCccccceeEEeeCHH
Confidence 9999999999999999999999 89999888877544333333333443
|
|
| >PRK13762 tRNA-modifying enzyme; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.4e-11 Score=131.66 Aligned_cols=214 Identities=14% Similarity=0.138 Sum_probs=156.6
Q ss_pred cCCCeEEEeEeEeeccCCCCCCCCCCCCCCcCCCC--cccccCCCHHHHHHHHHHHHH---C---C--------------
Q psy8199 674 FDANEIELAVLLSIKTGGCTEDCGYCPQSTHYNTE--ITATKILSIESVITAAQKAKS---D---G-------------- 731 (965)
Q Consensus 674 ~~g~~~~~~~~i~~~s~~C~~~C~fC~~~~~~~~~--~~~~~~~~~eei~~~~~~~~~---~---g-------------- 731 (965)
|+|-.-..|..+..+..+|+++|.||......... ....++.++++|++++..... . |
T Consensus 50 fygi~s~~c~q~~P~~~~C~~rC~fC~r~~~~~~~~~~~~~~~~~peeiv~~~~~~~~~~i~g~~g~~~v~~~~~~ea~~ 129 (322)
T PRK13762 50 FYGIESHRCVQMTPVVAWCNQRCLFCWRPLEEDVGLELKEPEWDDPEEIVEESIKEQRKLLSGYKGNPKVDREKFEEAME 129 (322)
T ss_pred cccccchheeccCchhHHHhccCceeeccCCCCcccccCCCCCCCHHHHHHHHHHHHHHHhhccCCCCCCCHHHhhhccC
Confidence 43544445555665345599999999754322211 223456789999999976532 1 2
Q ss_pred CCEEEEeeccCCCCcccHHHHHHHHHHHHhcCcEeEE-ecCCCCHHHHHHHHHhCCCeEeccCCC-CHHHHhcccC---C
Q psy8199 732 ATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCL-TLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIIS---T 806 (965)
Q Consensus 732 ~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~~~~i~~-~~~~~~~e~l~~Lk~aG~~~i~i~~es-~~~~~~~i~~---~ 806 (965)
.+.+.|++++.|+.. .++.++++.+++.++.+.+ ++|.+ ++.++.| +++++.+.+++++ +++.++++++ .
T Consensus 130 ~~~v~iSl~GEPlL~---p~l~eli~~~k~~Gi~~~L~TNG~~-~e~l~~L-~~~~d~i~VSLda~~~e~~~~i~~~~~~ 204 (322)
T PRK13762 130 PKHVAISLSGEPTLY---PYLPELIEEFHKRGFTTFLVTNGTR-PDVLEKL-EEEPTQLYVSLDAPDEETYKKINRPVIP 204 (322)
T ss_pred CCEEEEeCCccccch---hhHHHHHHHHHHcCCCEEEECCCCC-HHHHHHH-HhcCCEEEEEccCCCHHHHHHHhCCCCC
Confidence 346888867777654 4688888888888887765 55654 7888999 7899999999999 8999999976 3
Q ss_pred CCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccccccCCC--CCCCCCCCCHHHHHH
Q psy8199 807 RDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGT--PLYGSSILDPLEFIR 884 (965)
Q Consensus 807 ~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT--~l~~~~~~~~~~~~~ 884 (965)
.+++..++.++.+++.|.++...+.+-.|.+..+..+.++++++++ ++.|.+.+|+|.... .+.....++.+++.+
T Consensus 205 ~~~~~vl~~L~~l~~~~~~~~ir~tlv~g~Nd~e~~~~a~l~~~~~--~~~Iel~~y~~~G~~k~~l~~~~~p~~eev~~ 282 (322)
T PRK13762 205 DAWERILETLELLPSKKTRTVIRITLVKGYNMHDPEGFAKLIERAN--PDFVEVKAYMHVGYSRNRLTRDNMPSHEEVRE 282 (322)
T ss_pred CcHHHHHHHHHHHHhCCCCEEEEEEEECCcCccHHHHHHHHHHHcC--CCEEEEECCeECCCccccccccCCcCHHHHHH
Confidence 5899999999999999987766555544555555558888999998 899999889887554 233445678899999
Q ss_pred HHHHHHHHCC
Q psy8199 885 TIAVARITMP 894 (965)
Q Consensus 885 ~ia~~R~~lp 894 (965)
+...++....
T Consensus 283 ~~~~l~~~~~ 292 (322)
T PRK13762 283 FAKELAEYTG 292 (322)
T ss_pred HHHHHHHhcC
Confidence 9888877654
|
|
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.39 E-value=9.8e-11 Score=142.29 Aligned_cols=312 Identities=13% Similarity=0.129 Sum_probs=194.5
Q ss_pred cHHHHHHHHHHHhhcCCCCCeEEEcCChh----HHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcC
Q psy8199 296 HKPVIKLSEKLSSLTQYKLGHCFYGSDGA----SAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQS 371 (965)
Q Consensus 296 ~~~~~~la~~l~~~~~~~~~~v~~~~sGs----eA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~ 371 (965)
.+...++.+.|+++++ .+.|.|+++++ +|+..+++.. ++.+|...|+ +++...+-||+........|
T Consensus 567 ~~~~~~~r~~la~i~g--~~~v~f~pnaga~ge~a~~~vi~~~---~~~~Gd~~r~-~vli~~~aH~sn~a~a~~~G--- 637 (993)
T PLN02414 567 QEMFEDLGDLLCEITG--FDSFSLQPNAGAAGEYAGLMVIRAY---HLSRGDHHRN-VCIIPVSAHGTNPASAAMCG--- 637 (993)
T ss_pred HHHHHHHHHHHHHHhC--CCeEEEcCCCcHHHHHHHHHHHHHH---HhccCCCCCC-EEEeCCCcCccCHHHHHHCC---
Confidence 4455789999999994 69999998887 6776666655 4444544444 45555688998554433322
Q ss_pred ccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHH
Q psy8199 372 FKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREI 451 (965)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l 451 (965)
..++.+|.... +. .|+++|+++++++.+++++|++.- +++.+|...+ +++|.++
T Consensus 638 ---------~~vv~v~~d~~-G~-----------vDle~L~~~i~~~~~~ta~V~vt~-pSn~gg~e~~----I~eI~~i 691 (993)
T PLN02414 638 ---------MKIVVVGTDAK-GN-----------INIEELRKAAEAHKDNLAALMVTY-PSTHGVYEEG----IDEICDI 691 (993)
T ss_pred ---------CEEEEeccCCC-CC-----------cCHHHHHHHHhccCCCeEEEEEEC-CCccccccch----HHHHHHH
Confidence 24455554321 11 489999999986556788888876 6778887777 9999999
Q ss_pred HHhcCCeEEEeccccCCCcccccccccccCCCcceeee--ccccC----CCcccceeeeecHHHHHhhhccC--Ccccc-
Q psy8199 452 CNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCL--SKGIT----GGYLPLSLVMTTDKIYNSIYYKN--NINIF- 522 (965)
Q Consensus 452 ~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~--sK~l~----gG~~pig~v~~~~~i~~~~~~~~--~~~~~- 522 (965)
|+++|+++++|-++. .+..+ ...-..+..|++++ .|.++ +|+-.+|.+.+++++...+-... ....+
T Consensus 692 ah~~Galv~vDgAq~-~a~~~---l~~p~~~GaD~~~~s~HK~f~~P~G~GGPg~G~l~~~~~L~p~lPg~~v~~~~~~~ 767 (993)
T PLN02414 692 IHDNGGQVYMDGANM-NAQVG---LTSPGFIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVPTGGIP 767 (993)
T ss_pred HHHcCCEEEEEecCH-HhccC---cCCccccCCCEEEecCCccCCcCcccCCCCeeeEEEchhhcccCCCCccccCCCcc
Confidence 999999999999985 22111 11112334799887 47554 34346888988888776654210 00000
Q ss_pred ---cc--cCCCC----CCHHHHHHHHHHHHHHhcccH---HHHHHHHHHHHHHHHHcccCCCceeeeeceeE-E--EEEE
Q psy8199 523 ---LH--SHSYS----GNPLACCAALATLEIFNKDNI---LQRISQDMKKITKALTSLITHPKIINFRQKGM-I--WAFD 587 (965)
Q Consensus 523 ---~~--~~t~~----~~~~~~aaa~a~L~~~~~~~~---~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~G~-~--~~i~ 587 (965)
.. .+|.. |+.+.+.++..-+..+-.+++ .++...+..++.++|.+.. .+......|. + +.+.
T Consensus 768 ~r~~~s~iGt~~~a~~g~al~l~~A~~yi~~lG~~Gl~~~a~~a~~nAnYl~~rL~~~~---~~~~~~~~~~~~hEfv~~ 844 (993)
T PLN02414 768 RPEKTQPLGTISAAPWGSALILPISYTYIAMMGSEGLTDASKIAILNANYMAKRLEGHY---PVLFRGKNGTCAHEFIID 844 (993)
T ss_pred cccCCCCcCCccchhhhhHHHHHHHHHHHHHHCHhHHHHHHHHHHHHHHHHHHHHHhhC---CccccCCCCCeeeeEEEe
Confidence 00 12322 444455555555665555555 6667778889999887632 1111111222 1 1112
Q ss_pred EeecCccchhhHHHHHHHHHHHcCcEEe----ecCCEEEEeCCcccCHHHHHHHHHhhhcccccHHH
Q psy8199 588 VIIEDPEQIETFSKKFFVAALKNELLLR----PIGNTVYLMPPYILNKNEIQHMTSAIFQTFNELDE 650 (965)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~l~~~Gi~~~----~~~~~lR~~p~~~~t~~~i~~~~~~l~~~~~~~~e 650 (965)
+. .-+......+..+.++|.+.|+... |..+.+|++|.-..+.+++|++++++.....+..+
T Consensus 845 ~~-~l~~~~g~~~~di~krL~d~Gihapt~~~pv~~~lmiepTE~~skeelDrf~~al~~i~~e~~~ 910 (993)
T PLN02414 845 LR-PFKNTAGIEPEDVAKRLMDYGFHAPTMSWPVPGTLMIEPTESESKAELDRFCDALISIREEIAD 910 (993)
T ss_pred cc-ccccccCCCHHHHHHHHHHcCcEEeeeccccCCEEEEEeeeeCCHHHHHHHHHHHHHHHHHHHH
Confidence 11 0000001113568888999998764 44578999999999999999999999776655443
|
|
| >PRK02769 histidine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.6e-10 Score=128.99 Aligned_cols=290 Identities=14% Similarity=0.125 Sum_probs=178.8
Q ss_pred CcHHHHHHHHHHHhhcCCCCCe--EEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCc
Q psy8199 295 THKPVIKLSEKLSSLTQYKLGH--CFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSF 372 (965)
Q Consensus 295 ~~~~~~~la~~l~~~~~~~~~~--v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~ 372 (965)
..+...+..+.++++++...+. .+||+||||||..|+..+|.+. +++.|++ ...-|.+..-+....+
T Consensus 63 ~~~~e~~~~~~~a~l~g~~~~~~~G~~TsGgTean~~a~~~ar~~~------~~~~ii~-s~~~H~Sv~ka~~~lg---- 131 (380)
T PRK02769 63 SFDFERDVMNFFAELFKIPFNESWGYITNGGTEGNLYGCYLARELF------PDGTLYY-SKDTHYSVSKIARLLR---- 131 (380)
T ss_pred hHHHHHHHHHHHHHHhCCCCCCCCEEEecChHHHHHHHHHHHHHhC------CCcEEEe-CCCceehHHHHHHHcC----
Confidence 3445567788888988754444 4899999999999999998752 2344444 4455655433322222
Q ss_pred cchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHH
Q psy8199 373 KEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREIC 452 (965)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~ 452 (965)
.+...+|... .+. .|+++|++++.+.+..+.+|++.- +++++|.+.| +++|.++|
T Consensus 132 --------~~~~~V~~~~-~g~-----------id~~~L~~~i~~~~~~t~lvv~t~-gtt~tG~idp----i~~I~~i~ 186 (380)
T PRK02769 132 --------IKSRVITSLP-NGE-----------IDYDDLISKIKENKNQPPIIFANI-GTTMTGAIDN----IKEIQEIL 186 (380)
T ss_pred --------CCCceeccCC-CCc-----------CcHHHHHHHHHhCCCCcEEEEEEe-CCCCCcccCC----HHHHHHHH
Confidence 1222333321 111 378999999976544566777776 7899999998 99999999
Q ss_pred HhcC---CeEEEeccccCCCcccc-----cccccccCCCcceeeeccc-cCCCcccceeeeecHHHHHhhhccCCccccc
Q psy8199 453 NNYN---IHLIADEIAVGCGRTGK-----FFACEHAEIWPDFLCLSKG-ITGGYLPLSLVMTTDKIYNSIYYKNNINIFL 523 (965)
Q Consensus 453 ~~~g---~llI~DEv~tg~gr~G~-----~~~~~~~~~~pDivt~sK~-l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~ 523 (965)
++|| +++++|-+|.|+ ..-. .+.+. . ..|.+++|-. +.|+..+.|+++.+++..+.+...... ...
T Consensus 187 ~~~g~~~~~lHVDaA~gg~-~~p~~~~~~~~d~~--~-~vDsis~s~HK~~~~P~g~G~l~~r~~~~~~~~~~~~y-l~~ 261 (380)
T PRK02769 187 KKIGIDDYYIHADAALSGM-ILPFVNNPPPFSFA--D-GIDSIAISGHKFIGSPMPCGIVLAKKKYVERISVDVDY-IGS 261 (380)
T ss_pred HHhCCCceEEEEEecccce-eecccCccccCCcc--C-CCCEEEECCcccCCCCCCcEEEEEehhhhhhcccCccc-cCC
Confidence 9998 699999999764 2210 11111 2 5799998742 334347889999998776655321000 000
Q ss_pred ccCCCCCC--HHHHHHHHHHHHHHhccc---HHHHHHHHHHHHHHHHHcccCCCceeee-eceeEEEEEEEeecCccchh
Q psy8199 524 HSHSYSGN--PLACCAALATLEIFNKDN---ILQRISQDMKKITKALTSLITHPKIINF-RQKGMIWAFDVIIEDPEQIE 597 (965)
Q Consensus 524 ~~~t~~~~--~~~~aaa~a~L~~~~~~~---~~~~~~~~~~~l~~~L~~l~~~~~i~~v-~g~G~~~~i~~~~~~~~~~~ 597 (965)
...|+.|. ..+.++..++|+.+..++ ..++..++.+++.++|++. ++..+ .+..+.+.|... .
T Consensus 262 ~d~t~~GSR~g~~~l~lw~aL~~lg~~G~~~~~~~~~~la~~l~~~L~~~----g~~~~~~p~~~~v~f~~~------~- 330 (380)
T PRK02769 262 RDQTISGSRNGHTALLLWAAIRSLGSKGLRQRVQHCLDMAQYAVDRLQAN----GIPAWRNPNSITVVFPCP------S- 330 (380)
T ss_pred CCCCccCCCCcHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhC----CCEEEcCCCceEEEEcCC------C-
Confidence 11233333 345666677777765543 4566777888888888653 33322 233333333221 1
Q ss_pred hHHHHHHHHHHHcCcEEeecCCEEEEeCCcccCHHHHHHHHHhhhcc
Q psy8199 598 TFSKKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQT 644 (965)
Q Consensus 598 ~~~~~~~~~l~~~Gi~~~~~~~~lR~~p~~~~t~~~i~~~~~~l~~~ 644 (965)
..+ .+|..+.+.++.+|+.....++.+.++++++.+...
T Consensus 331 ---~~~-----~~~w~l~~~~~~~hi~~~~~~~~~~~~~f~~dl~~~ 369 (380)
T PRK02769 331 ---ERI-----WKKWHLATSGNQAHIITMPHHNKQQIDSLIDELIFD 369 (380)
T ss_pred ---HHH-----HhCeeEcccCCEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 112 156666665667777766778888899888777653
|
|
| >PLN03032 serine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.6e-10 Score=127.68 Aligned_cols=313 Identities=12% Similarity=0.055 Sum_probs=187.7
Q ss_pred CHHHHHHHHHHHhh-ccc-cccCC---CCcHHHHHHHHHHHhhcCCCCCeE--EEcCChhHHHHHHHHHHHHHHHhcCCC
Q psy8199 272 NSYINKALKNQLNK-LEH-VMLSN---LTHKPVIKLSEKLSSLTQYKLGHC--FYGSDGASAVEVALKMSFHYWYNKGFL 344 (965)
Q Consensus 272 ~p~v~~av~~~~~~-~~~-~~~~~---~~~~~~~~la~~l~~~~~~~~~~v--~~~~sGseA~~~Al~~a~~~~~~~g~~ 344 (965)
++.+++++.+.+.+ .+. ..... ...+...++.+.++++++.+.+.+ +||+||||||..|+..+|.+.
T Consensus 36 ~~~~~~~~~~~~~~~~gnP~s~~~~g~~a~~~e~~v~~~ia~llg~~~~~~~G~fTsGGTEaNl~al~~ar~~~------ 109 (374)
T PLN03032 36 DYGELSQLMKYSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELEKDEYWGYITTCGTEGNLHGILVGREVF------ 109 (374)
T ss_pred ChHHHHHHHHhcccCCCCCcccCCCCccHHHHHHHHHHHHHHHhCCCCccCCEEEeCchHHHHHHHHHHHHHhC------
Confidence 34456666666543 211 11111 234556778888999997666665 999999999999999998752
Q ss_pred CceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEE
Q psy8199 345 NKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAA 424 (965)
Q Consensus 345 ~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aa 424 (965)
++ .+++....-|-+..-+....+ .+...+|.... +. -|+++|+++|++....+.+
T Consensus 110 ~~-~~vi~s~~~H~Sv~kaa~~lg------------~~~~~V~~d~~-g~-----------id~~~L~~~i~~~~~~~~l 164 (374)
T PLN03032 110 PD-GILYASRESHYSVFKAARMYR------------MEAVKVPTLPS-GE-----------IDYDDLERALAKNRDKPAI 164 (374)
T ss_pred CC-cEEEeCCCceeHHHHHHHHcC------------CCCeEeeeCCC-Cc-----------CcHHHHHHHHHHcCCCCEE
Confidence 22 255666666766443333222 12334554321 11 4889999999764334566
Q ss_pred EEEccccccCCCcccCChHHHHHHHHHHHhcC-----CeEEEeccccCCCccc-----ccccccccCCCcceeeeccccC
Q psy8199 425 IIIEPLVQCAGGMIMYDSIYLKLVREICNNYN-----IHLIADEIAVGCGRTG-----KFFACEHAEIWPDFLCLSKGIT 494 (965)
Q Consensus 425 ii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g-----~llI~DEv~tg~gr~G-----~~~~~~~~~~~pDivt~sK~l~ 494 (965)
|++.- .++++|.+.| +++|.++|++|| +++++|-+|.|+ ..- ..+.+ ....|.++++-.-.
T Consensus 165 vv~ta-gtt~tG~idp----i~eI~~i~~~~g~~~~~~~lHvDaA~gg~-~~p~~~~~~~~~~---~~~vDSis~s~HK~ 235 (374)
T PLN03032 165 LNVNI-GTTVKGAVDD----LDRILRILKELGYTEDRFYIHCDGALFGL-MMPFVSRAPEVTF---RKPIGSVSVSGHKF 235 (374)
T ss_pred EEEEe-cCcCCccCCC----HHHHHHHHHHhCCCCCCeeEEEEccchhh-hhhccCCCcccCC---CcCCcEEEECcccc
Confidence 66665 6889999998 999999999997 489999999753 211 00111 12478899885433
Q ss_pred CC-cccceeeeecHHHHHhhhccCCcccccccCCCCCC--HHHHHHHHHHHHHHhccc---HHHHHHHHHHHHHHHHHcc
Q psy8199 495 GG-YLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGN--PLACCAALATLEIFNKDN---ILQRISQDMKKITKALTSL 568 (965)
Q Consensus 495 gG-~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~--~~~~aaa~a~L~~~~~~~---~~~~~~~~~~~l~~~L~~l 568 (965)
+| ..++|+++.+++..+.+...... -.....|..|+ ....++..++|+.+..++ ..++..++.+++.+.|++.
T Consensus 236 ~g~P~g~G~ll~r~~~~~~~~~~~~Y-l~~~d~ti~gSR~g~~~l~~w~~l~~~G~~g~~~~~~~~~~~a~~l~~~l~~~ 314 (374)
T PLN03032 236 LGCPMPCGVALTRKKHVKALSQNVEY-LNSRDATIMGSRNGHAPLYLWYTLRRKGYRGIKRDVQHCMRNAHYLKDRLTEA 314 (374)
T ss_pred cCCCcCeEEEEEEchhhHhhccCCcc-cCCCCCcccCCCchHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 33 47888999988777655331000 00011234443 244556667777665554 4566667788888888764
Q ss_pred cCCCcee-eeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecCCEEEEeCCcccCHHHHHHHHHhhhc
Q psy8199 569 ITHPKII-NFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQ 643 (965)
Q Consensus 569 ~~~~~i~-~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~lR~~p~~~~t~~~i~~~~~~l~~ 643 (965)
++. ...+..+.+.|... . .. . ..+|..+.+.++.+++.....++.+.++++++.+.+
T Consensus 315 ----~~~~~~~p~~~~V~f~~~--~-------~~----~-~~~~w~l~~~~~~~hi~vm~~~~~~~id~fi~dl~~ 372 (374)
T PLN03032 315 ----GLTCRLNELSSTVVFERP--M-------DE----A-FIKKWQLACEGDIAHVVVMPNVTVEKLDEFVEELVE 372 (374)
T ss_pred ----CCcEEECCCceEEEEcCC--C-------cH----h-HhheeeecccCCEEEEEECCCCCHHHHHHHHHHHhc
Confidence 222 22233333333211 0 11 1 225655555555666665556778899999887654
|
|
| >PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.4e-10 Score=130.82 Aligned_cols=280 Identities=13% Similarity=0.064 Sum_probs=166.6
Q ss_pred HHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEE
Q psy8199 273 SYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICL 352 (965)
Q Consensus 273 p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~ 352 (965)
++-.+++.+.+..... ....+...++++.+++.+ +.+++++++||++|+..++.++.- .++++||+.
T Consensus 11 ~~~~~~~~~~l~~~~~----~g~~~~~~~~e~~la~~~--g~~~~v~~~sgt~al~~~l~~~~~-------~~Gd~Viv~ 77 (375)
T PRK11706 11 GTELDYIQQAMSSGKL----CGDGGFTRRCQQWLEQRF--GSAKVLLTPSCTAALEMAALLLDI-------QPGDEVIMP 77 (375)
T ss_pred HHHHHHHHHHHHcCCc----cCCCHHHHHHHHHHHHHh--CCCeEEEECCHHHHHHHHHHHhCC-------CCCCEEEEC
Confidence 3446677777665421 123466788889899988 468999999999999988775421 356889999
Q ss_pred cCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccc
Q psy8199 353 QNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQ 432 (965)
Q Consensus 353 ~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~ 432 (965)
..+|.+........+. ..++++....... .|++++++++.+ ++.+|++ +
T Consensus 78 ~~t~~~~~~~~~~~G~-------------~~v~~d~d~~~~~-----------~d~~~le~~i~~---~tk~i~~---~- 126 (375)
T PRK11706 78 SYTFVSTANAFVLRGA-------------KIVFVDIRPDTMN-----------IDETLIEAAITP---KTRAIVP---V- 126 (375)
T ss_pred CCCcHHHHHHHHHcCC-------------EEEEEecCCCcCC-----------cCHHHHHHhcCC---CCeEEEE---e-
Confidence 9888776433322221 2233333211111 367888888853 4555554 2
Q ss_pred cCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcc--cccccccccCCCcceeeec----cccCCCcccceeeeec
Q psy8199 433 CAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRT--GKFFACEHAEIWPDFLCLS----KGITGGYLPLSLVMTT 506 (965)
Q Consensus 433 ~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~--G~~~~~~~~~~~pDivt~s----K~l~gG~~pig~v~~~ 506 (965)
+.+|...+ +++|.++|++||+++|.|++|+ +|.. |.. .|---|+.+|| |.++.| ...+.+..+
T Consensus 127 ~~~G~~~~----~~~i~~la~~~~i~vIeD~a~a-~g~~~~~~~-----~g~~~~~~~~Sf~~~K~l~~g-~gG~~~~~~ 195 (375)
T PRK11706 127 HYAGVACE----MDTIMALAKKHNLFVVEDAAQG-VMSTYKGRA-----LGTIGHIGCFSFHETKNYTAG-EGGALLIND 195 (375)
T ss_pred CCCCCccC----HHHHHHHHHHcCCEEEEECccc-cccccCCee-----eecCcCEEEEeCCCCcccccc-CCeEEEECC
Confidence 34676554 7899999999999999999997 4431 221 12223778888 988655 233445556
Q ss_pred HHHHHhhhc---cCCcc-c-----------ccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcccCC
Q psy8199 507 DKIYNSIYY---KNNIN-I-----------FLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITH 571 (965)
Q Consensus 507 ~~i~~~~~~---~~~~~-~-----------~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~~~ 571 (965)
+++++.+.. .+... . ...+.++..+.+.++.+++-|+.++ ...++-+++.+++.+.|..+...
T Consensus 196 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~ql~~l~--~~~~~R~~~~~~~~~~L~~~~~~ 273 (375)
T PRK11706 196 PALIERAEIIREKGTNRSQFFRGQVDKYTWVDIGSSYLPSELQAAYLWAQLEAAD--RINQRRLALWQRYYDALAPLAEA 273 (375)
T ss_pred HHHHHHHHHHHHcCCCcchhhccCCCcceeeecccccCcCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhcCCCcC
Confidence 777654332 11000 0 0123344445677777777776653 34566677777777877665321
Q ss_pred Ccee--eee----ceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEe
Q psy8199 572 PKII--NFR----QKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLR 615 (965)
Q Consensus 572 ~~i~--~v~----g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~ 615 (965)
+.+. ... ....++.+.+. +. ...+++.+.|.++||.++
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~--~~----~~r~~l~~~L~~~gI~~~ 317 (375)
T PRK11706 274 GRIELPSIPDDCKHNAHMFYIKLR--DL----EDRSALINFLKEAGIMAV 317 (375)
T ss_pred CeeecCCCCCCCceeeEEEEEEEC--Cc----CCHHHHHHHHHHCCCCcc
Confidence 1121 111 12223444332 11 124578889999999865
|
|
| >PRK09028 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.2e-11 Score=135.99 Aligned_cols=239 Identities=13% Similarity=0.125 Sum_probs=151.4
Q ss_pred CCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCc
Q psy8199 293 NLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSF 372 (965)
Q Consensus 293 ~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~ 372 (965)
...++....|+++++++.+ .+.+++++||++|+..++.... .++++||+.++.|.+.......
T Consensus 57 r~~npt~~~Le~~iA~le~--~~~~~~~~sG~~Ai~~~l~all--------~~GD~Vvv~~~~Y~~t~~l~~~------- 119 (394)
T PRK09028 57 RRGTPTHFAFQAAIVELEG--GAGTALYPSGAAAISNALLSFL--------KAGDHLLMVDSCYEPTRDLCDK------- 119 (394)
T ss_pred CCCCchHHHHHHHHHHHhC--CCcEEEECCHHHHHHHHHHHHh--------CCCCEEEEECCCcHHHHHHHHH-------
Confidence 3345566789999998874 3578899999999999987653 3678999999998665321100
Q ss_pred cchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHH
Q psy8199 373 KEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREIC 452 (965)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~ 452 (965)
........+.+++. .+.+++++++. +++.+|++|. +.|++|.+.+ +++|.++|
T Consensus 120 --~l~~~Gi~v~~v~~-----------------~~~e~l~~~l~---~~TklV~les-psNPtg~v~d----l~~I~~la 172 (394)
T PRK09028 120 --ILKGFGIETTYYDP-----------------MIGEGIRELIR---PNTKVLFLES-PGSITMEVQD----VPTLSRIA 172 (394)
T ss_pred --hhhhcceEEEEECC-----------------CCHHHHHHhcC---cCceEEEEEC-CCCCCCcHHH----HHHHHHHH
Confidence 00011112223221 13466777764 4578999998 8999887765 99999999
Q ss_pred HhcCCeEEEeccccCCCcccccccccccCCCcceee--eccccCCC-cccceeeeecHHHHHhhhccCCcccccccCCCC
Q psy8199 453 NNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLC--LSKGITGG-YLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYS 529 (965)
Q Consensus 453 ~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt--~sK~l~gG-~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~ 529 (965)
+++|+++|+|++|.. + ..+.-+....|+++ ..|.++|. -.-.|+++.++++++.+... . ...| ..
T Consensus 173 ~~~g~~lvvD~t~a~----p--~~~~Pl~~GaDivv~S~tK~l~Gh~d~~~G~~~~~~~~~~~l~~~---~-~~~G--~~ 240 (394)
T PRK09028 173 HEHDIVVMLDNTWAS----P--INSRPFEMGVDISIQAATKYIVGHSDVMLGTATANEKHWDQLREH---S-YLMG--QC 240 (394)
T ss_pred HHcCCEEEEECCccc----c--ccCCccccCceEEEEeCCeEecCCCCEEEEEEECCHHHHHHHHHH---H-HhcC--CC
Confidence 999999999999962 1 11222344578885 56988762 23356666677766655430 0 0112 23
Q ss_pred CCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHccc-----CCCcee----------eeeceeEEEEEEEe
Q psy8199 530 GNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLI-----THPKII----------NFRQKGMIWAFDVI 589 (965)
Q Consensus 530 ~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~-----~~~~i~----------~v~g~G~~~~i~~~ 589 (965)
.+|..+...+..|+.+.- ..++-.++...+.+.|++-. .+|++. ...|-|.|++|++.
T Consensus 241 ~~p~~a~l~~rgl~TL~l--R~~~~~~na~~la~~L~~~p~v~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~ 313 (394)
T PRK09028 241 TSPDDVYLAMRGLRTLGV--RLAQHEKNALKVANWLATRPEVDHVRHPAFETCPGHEFFKRDFSGSNGLFSFVLK 313 (394)
T ss_pred CCHHHHHHHHcccCcHHH--HHHHHHHHHHHHHHHHhcCCCccEEECCCCCCCccHHHHHHhccCCCceEEEEEC
Confidence 567777777666655432 24555666666777776432 133322 12366889999985
|
|
| >TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic | Back alignment and domain information |
|---|
Probab=99.37 E-value=4e-11 Score=134.68 Aligned_cols=261 Identities=15% Similarity=0.183 Sum_probs=158.0
Q ss_pred CCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCc
Q psy8199 293 NLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSF 372 (965)
Q Consensus 293 ~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~ 372 (965)
....+...+|+++++++.+ .+.+++++||+.|+..++.+. .++++||+.+..|++.... +
T Consensus 43 r~~~p~~~~le~~la~l~g--~~~~l~~~sG~~al~~~l~ll---------~~Gd~Vl~~~~~y~~~~~~-~-------- 102 (378)
T TIGR01329 43 RSGNPTRTALESLLAKLDK--ADRAFAFSSGMAALDVITRLL---------NNGDEIIAGDDLYGGTDRL-L-------- 102 (378)
T ss_pred CCCChHHHHHHHHHHHHhC--CCcEEEECCHHHHHHHHHHHh---------CCCCEEEEcCCCchHHHHH-H--------
Confidence 3456678899999999985 377888899999988766532 3567899888887654211 0
Q ss_pred cchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHH
Q psy8199 373 KEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREIC 452 (965)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~ 452 (965)
..........+.+++. .|+++++++++ +++.+|++|. +.|++|.+.+ +++|.++|
T Consensus 103 ~~~~~~~G~~v~~vd~-----------------~d~~~le~~i~---~~tklv~le~-psnptg~v~d----l~~I~~la 157 (378)
T TIGR01329 103 TQVVPRSGVVVVHVDT-----------------TDLDKVKAALG---PKTKLVLLES-PTNPLQKIVD----IRKISEMA 157 (378)
T ss_pred HHHHHHcCcEEEEeCC-----------------CCHHHHHHhcC---cCceEEEEEC-CCCCCCeeec----HHHHHHHH
Confidence 0000111122334432 25678888875 4578888888 7999998887 99999999
Q ss_pred HhcCCeEEEeccccCCCcccccccccccCCCcceee--eccccCCC-cccceeeeec-HHHHHhhhccCCcccccccCCC
Q psy8199 453 NNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLC--LSKGITGG-YLPLSLVMTT-DKIYNSIYYKNNINIFLHSHSY 528 (965)
Q Consensus 453 ~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt--~sK~l~gG-~~pig~v~~~-~~i~~~~~~~~~~~~~~~~~t~ 528 (965)
++||+++|+|+++. .+.... ..+...|+++ .+|.++|+ ....|+++++ +++.+.+.. .......
T Consensus 158 ~~~g~~vivD~a~~-~~~~~~-----~l~~g~Di~v~S~tK~l~G~~~~~~G~v~~~~~~~~~~~~~------~~~~~G~ 225 (378)
T TIGR01329 158 HAQNALVVVDNTMM-SPLLCN-----PLELGADIVYHSATKFLAGHSDVMAGVLAVKGEEIAKKVYF------LQNSTGS 225 (378)
T ss_pred HHcCCEEEEECCCc-ccccCC-----hhhcCCcEEEEecceeccCCccceeEEEEeCcHHHHHHHHH------HHHhcCC
Confidence 99999999999974 221111 1123468875 57988763 1346777674 455454433 1111123
Q ss_pred CCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHccc-----CCCceee----------eeceeEEEEEEEeecCc
Q psy8199 529 SGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLI-----THPKIIN----------FRQKGMIWAFDVIIEDP 593 (965)
Q Consensus 529 ~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~-----~~~~i~~----------v~g~G~~~~i~~~~~~~ 593 (965)
..+|..++.++..|+.+. ...++-.++...+.+.|++.. .+|++.. ..+.|.+++|++. +
T Consensus 226 ~~~~~~a~l~~~~l~tl~--~R~e~~~~na~~la~~L~~~~~v~~v~~p~l~~~p~~~l~~~~~~g~~~~~sf~~~--~- 300 (378)
T TIGR01329 226 GLAPFDCWLLLRGIKTLA--IRIEKQQENARAIAMFLSTHPRVKKVRYAGLPSHPGFHLHFSQAKGAGSVLSFETG--S- 300 (378)
T ss_pred cCCHHHHHHHHccCCCHH--HHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCcceEEEEEEC--C-
Confidence 346666655544444332 234555556666666665321 1232211 2356789999884 2
Q ss_pred cchhhHHHHHHHHHHHcCcEEeecC
Q psy8199 594 EQIETFSKKFFVAALKNELLLRPIG 618 (965)
Q Consensus 594 ~~~~~~~~~~~~~l~~~Gi~~~~~~ 618 (965)
...+.+|.+.|...++.++.++
T Consensus 301 ---~~~~~~~~~~L~~~~i~~s~G~ 322 (378)
T TIGR01329 301 ---VALSKRLVEATKLFSITVSFGS 322 (378)
T ss_pred ---HHHHHHHHHhCcCcccccCCCC
Confidence 2224467777766666665554
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >PRK08064 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=7.2e-11 Score=133.21 Aligned_cols=239 Identities=13% Similarity=0.135 Sum_probs=146.0
Q ss_pred CCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcC
Q psy8199 292 SNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQS 371 (965)
Q Consensus 292 ~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~ 371 (965)
.+...+...+++++++++.+. +..+.++||+.|+..++... .++++||+.++.|++.......
T Consensus 49 ~r~~~p~~~~le~~lA~l~g~--~~~v~~~sG~~ai~~~l~~l---------~~Gd~Vlv~~~~y~~~~~~~~~------ 111 (390)
T PRK08064 49 SRSGNPTREALEDIIAELEGG--TKGFAFASGMAAISTAFLLL---------SKGDHVLISEDVYGGTYRMITE------ 111 (390)
T ss_pred cCCCChhHHHHHHHHHHHhCC--CCeEEECCHHHHHHHHHHHh---------CCCCEEEEccCccchHHHHHHH------
Confidence 455677888999999999863 34666788999998888522 2567899999988764211100
Q ss_pred ccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHH
Q psy8199 372 FKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREI 451 (965)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l 451 (965)
........+.+++. .|++++++++. +++.+|++|. ++|++|.+.+ +++|.++
T Consensus 112 ---~~~~~G~~v~~v~~-----------------~d~~~l~~~l~---~~tklV~l~~-p~NptG~~~d----l~~I~~l 163 (390)
T PRK08064 112 ---VLSRFGIEHTFVDM-----------------TNLEEVAQNIK---PNTKLFYVET-PSNPLLKVTD----IRGVVKL 163 (390)
T ss_pred ---HHHHcCCEEEEECC-----------------CCHHHHHHhcC---CCceEEEEEC-CCCCCcEecc----HHHHHHH
Confidence 00111123444443 25677877774 3567888887 7999998886 8999999
Q ss_pred HHhcCCeEEEeccccCCCcccccccccccCCCcceee--eccccCCCc-ccceeeee-cHHHHHhhhccCCcccccccCC
Q psy8199 452 CNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLC--LSKGITGGY-LPLSLVMT-TDKIYNSIYYKNNINIFLHSHS 527 (965)
Q Consensus 452 ~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt--~sK~l~gG~-~pig~v~~-~~~i~~~~~~~~~~~~~~~~~t 527 (965)
|+++|+++|+||+|..+ .... . .....|+++ ++|.++|.. .-.|++++ ++++++.+.. +.....
T Consensus 164 a~~~g~~vvvD~a~~~~-~~~~--~---~~~g~Divv~S~tK~~~G~~~~laG~~v~~~~~~~~~l~~------~~~~~g 231 (390)
T PRK08064 164 AKAIGCLTFVDNTFLTP-LLQK--P---LDLGADVVLHSATKFLAGHSDVLAGLAVVKDEELAQKLYF------LQNSFG 231 (390)
T ss_pred HHHcCCEEEEECCCCcc-cccC--c---hhhCCcEEEeecceeccCCccceeEEEEeCCHHHHHHHHH------HHHhcC
Confidence 99999999999998632 1111 1 122357775 579886521 12355555 4677776654 222223
Q ss_pred CCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHccc-----CCCcee----------eeeceeEEEEEEEe
Q psy8199 528 YSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLI-----THPKII----------NFRQKGMIWAFDVI 589 (965)
Q Consensus 528 ~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~-----~~~~i~----------~v~g~G~~~~i~~~ 589 (965)
...+|..+..++..++.+. ...++..++...+.+.|++.. .+|++. ...+.|.+++|++.
T Consensus 232 ~~~~~~~a~l~~~gl~tl~--~R~~~~~~~a~~la~~L~~~~~v~~v~yp~l~~~p~~~~~~~~~~g~gg~~sf~~~ 306 (390)
T PRK08064 232 AVLGVQDCWLVLRGLKTLH--VRLEHSSETANKIALYLQEHPKVQNVYYPGLQTHLGFDIQQSQATSAGAVLSFTLQ 306 (390)
T ss_pred CCCCHHHHHHHHcccCcHH--HHHHHHHHHHHHHHHHHhcCCCcceEECCCCCCCccHHHHHHhCCCcceEEEEEEC
Confidence 3345555555444444322 124444555556666665432 123221 23467889999985
|
|
| >COG1031 Uncharacterized Fe-S oxidoreductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.6e-11 Score=128.25 Aligned_cols=204 Identities=16% Similarity=0.260 Sum_probs=150.6
Q ss_pred HHHHHHHHHhcCCCeEEEeEeEeeccCCCCCC----CCCCCCCCcCCCCcccccCCCHHHHHHHHHHHHHCCCCEEEEee
Q psy8199 664 FRAQKVHRKYFDANEIELAVLLSIKTGGCTED----CGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGA 739 (965)
Q Consensus 664 ~~a~~~~~~~~~g~~~~~~~~i~~~s~~C~~~----C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~l~~ 739 (965)
-..+.+.++|-....+.+ .-|+. .++|+.. |+||.-+.. +. -..+++|.|+++++.+.+.|+++|.+.-
T Consensus 167 ~~GA~vv~qHP~yp~~vi-~EiET-yRGC~r~~~ggCSFCtEp~~-g~----~~~R~~e~Vv~EVkaLY~~GvrhFRlGR 239 (560)
T COG1031 167 PLGAEVVKQHPNYPEYVI-CEIET-YRGCPRRVSGGCSFCTEPVR-GR----PEFRPPEDVVEEVKALYRAGVRHFRLGR 239 (560)
T ss_pred hccchHHHhCCCCcceEE-EEEee-ccCCcccccCCCccccCcCc-CC----cccCCHHHHHHHHHHHHHhccceeeecc
Confidence 345567677653333443 44555 8999976 999987753 21 1247899999999999999999987642
Q ss_pred -------ccC----CCCcccHHHHHHHHHHHHhcCcEeEE------ecCCC------CHHHHHHHHHhCC--CeEeccCC
Q psy8199 740 -------AWR----ELKDRDLDNIENMICEVKKIGLETCL------TLGML------NENQAYRLKKVGL--DYYNHNLD 794 (965)
Q Consensus 740 -------g~~----~~~~~~~~~~~~~~~~i~~~~~~i~~------~~~~~------~~e~l~~Lk~aG~--~~i~i~~e 794 (965)
+.. +.+....+.+.++++.+++.-+.+.+ |+..+ +++.++.+.+.|- +...+|+|
T Consensus 240 Q~difsy~~~~~g~e~P~PnPealekL~~Gir~~AP~l~tLHiDNaNP~tIa~yp~eSr~i~K~ivky~TpGnVaAfGlE 319 (560)
T COG1031 240 QADIFSYGADDNGGEVPRPNPEALEKLFRGIRNVAPNLKTLHIDNANPATIARYPEESREIAKVIVKYGTPGNVAAFGLE 319 (560)
T ss_pred ccceeeecccccCCCCCCCCHHHHHHHHHHHHhhCCCCeeeeecCCCchhhhcChHHHHHHHHHHHhhCCCCceeeeecc
Confidence 111 12344578899999999874433311 33332 6677788888773 77899999
Q ss_pred C-CHHHHhcccCCCCHHHHHHHHHHHHHcC-------C---ceeeeEEEec-CCCHHHHHHHHHHHHhcCC---CCCcee
Q psy8199 795 T-SPKLYGDIISTRDYENRLNTLKNVRNVG-------I---NICCGGIIGL-SESRDQRAELIFQLANLNP---YPESVP 859 (965)
Q Consensus 795 s-~~~~~~~i~~~~~~~~~~~~i~~~~~~G-------i---~v~~~~i~Gl-~et~ed~~~~l~~l~~l~~---~~~~i~ 859 (965)
| +|.+.++-+-..+.|+.++|++...+.| + --+.++++|| |||.|...-..++|+++=+ ....|.
T Consensus 320 saDp~V~r~NnL~~spEEvl~AV~ivn~vG~~rg~nGlP~lLPGINfv~GL~GEtkeT~~ln~efL~~ild~gllvRRIN 399 (560)
T COG1031 320 SADPRVARKNNLNASPEEVLEAVEIVNEVGGGRGYNGLPYLLPGINFVFGLPGETKETYELNYEFLKEILDEGLLVRRIN 399 (560)
T ss_pred ccCHHHHhhccccCCHHHHHHHHHHHHHhcCccCcCCCccccccceeEecCCCccHHHHHhhHHHHHHHHhcCceEEEee
Confidence 9 8999888887889999999999999865 3 3468899999 8999999988888888532 356788
Q ss_pred eccccccCCCCCCCC
Q psy8199 860 INNLVQIKGTPLYGS 874 (965)
Q Consensus 860 ~~~~~P~~gT~l~~~ 874 (965)
+-..+++|||||+..
T Consensus 400 IRqV~~fpgT~~~~~ 414 (560)
T COG1031 400 IRQVVVFPGTPMWER 414 (560)
T ss_pred eeeEeecCCCchhhh
Confidence 888899999999865
|
|
| >TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.1e-10 Score=128.55 Aligned_cols=285 Identities=13% Similarity=0.050 Sum_probs=163.5
Q ss_pred HHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEE
Q psy8199 273 SYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICL 352 (965)
Q Consensus 273 p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~ 352 (965)
++-.+++.+.+.... + ...+...++.+.++++++ .++.++++||++|+..+++.+.- .++++|++.
T Consensus 10 ~~~~~~v~~~~~~~~-~----~~g~~~~~le~~la~~~g--~~~~v~~~sgt~al~~~l~al~~-------~~Gd~Viv~ 75 (380)
T TIGR03588 10 QDDIDAVVEVLKSDF-L----TQGPTVPAFEEALAEYVG--AKYAVAFNSATSALHIACLALGV-------GPGDRVWTT 75 (380)
T ss_pred HHHHHHHHHHHhcCC-c----cCChhHHHHHHHHHHHHC--CCeEEEEcCHHHHHHHHHHHcCC-------CCCCEEEeC
Confidence 455777877776532 1 124556788999999985 45677788999999999986521 356889999
Q ss_pred cCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhC-CCcEEEEEEcccc
Q psy8199 353 QNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKN-HNKIAAIIIEPLV 431 (965)
Q Consensus 353 ~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~-~~~~aaii~ep~v 431 (965)
.++|++........+ ...++++....... .|++++++.+.+. .+++.+|++
T Consensus 76 ~~~~~~~~~~~~~~G-------------~~~~~~~~~~~~~~-----------~d~~~l~~~i~~~~~~~t~~v~~---- 127 (380)
T TIGR03588 76 PITFVATANCALYCG-------------AKVDFVDIDPDTGN-----------IDEDALEKKLAAAKGKLPKAIVP---- 127 (380)
T ss_pred CcchHHHHHHHHHcC-------------CEEEEEecCCCcCC-----------cCHHHHHHHhhcccCCCceEEEE----
Confidence 988876632221111 12334443111111 3778888888632 124555553
Q ss_pred ccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCC--Ccceeeec----cccCCCcccceeeee
Q psy8199 432 QCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEI--WPDFLCLS----KGITGGYLPLSLVMT 505 (965)
Q Consensus 432 ~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~--~pDivt~s----K~l~gG~~pig~v~~ 505 (965)
.+..|...+ +++|.++|++||+++|.|++|+ +|-. +.....|. .-|+.++| |.++.| ..|+++.
T Consensus 128 ~~~~G~~~~----~~~i~~l~~~~~~~lI~D~a~a-~g~~---~~~~~~g~~~~~d~~~~S~~~~K~~~~~--~GG~v~~ 197 (380)
T TIGR03588 128 VDFAGKSVD----MQAIAALAKKHGLKIIEDASHA-LGAE---YGGKPVGNCRYADATVFSFHPVKIITTA--EGGAVTT 197 (380)
T ss_pred eCCCCccCC----HHHHHHHHHHcCCEEEEECCCc-ccCc---cCCEeCCCccccceEEEecCCCCccccc--CceEEEE
Confidence 233576555 8999999999999999999997 4321 11112232 34888876 777654 3455665
Q ss_pred c-HHHHHhhhc---cCCcc-c---------------ccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Q psy8199 506 T-DKIYNSIYY---KNNIN-I---------------FLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKAL 565 (965)
Q Consensus 506 ~-~~i~~~~~~---~~~~~-~---------------~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L 565 (965)
+ +++.+.+.. .+... . ...+..+..+.+.++.+++.|+.+ +...++-+++.+++.+.|
T Consensus 198 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~n~~m~~l~aa~g~~qL~~l--~~~~~~r~~~~~~~~~~L 275 (380)
T TIGR03588 198 NDEELAERMRLLRSHGITKDPLLFEKQDEGPWYYEQQELGFNYRMTDIQAALGLSQLKKL--DRFVAKRREIAARYDRLL 275 (380)
T ss_pred CCHHHHHHHHHHHHCCCCCCcccccccccCcceeeeeccccccCccHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHh
Confidence 3 556554432 11000 0 001222334566667777777655 346677788888888888
Q ss_pred HcccCCCceeeeec-ee--EEEEEEEeecCccchhhHHHHHHHHHHHcCcEEe
Q psy8199 566 TSLITHPKIINFRQ-KG--MIWAFDVIIEDPEQIETFSKKFFVAALKNELLLR 615 (965)
Q Consensus 566 ~~l~~~~~i~~v~g-~G--~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~ 615 (965)
..+..........+ .. .++.+.+...+ ....+.+.+.|.++||.++
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~r~~l~~~L~~~gI~~~ 324 (380)
T TIGR03588 276 KDLPYFTPLTIPLGSKSAWHLYPILLDQEF----GCTRKEVFEALRAAGIGVQ 324 (380)
T ss_pred cCCCCccCCCCCCCCEeEEEEEEEEECCcC----CCCHHHHHHHHHHCCCCcc
Confidence 76521110111111 11 22223232001 1124567888899999765
|
This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species. |
| >PRK05967 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.9e-11 Score=132.81 Aligned_cols=241 Identities=12% Similarity=0.068 Sum_probs=150.5
Q ss_pred cCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCc
Q psy8199 291 LSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQ 370 (965)
Q Consensus 291 ~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~ 370 (965)
+++..++....|+++++.+-+ .+..++++||++|+..++.... .++++||+.++.|.++......
T Consensus 58 YsR~gnPt~~~Le~~la~le~--~~~~v~~sSG~aAi~~~l~all--------~~GD~Vlv~~~~Y~~~~~l~~~----- 122 (395)
T PRK05967 58 YGTRGTPTTDALCKAIDALEG--SAGTILVPSGLAAVTVPFLGFL--------SPGDHALIVDSVYYPTRHFCDT----- 122 (395)
T ss_pred cCCCCChHHHHHHHHHHHHhC--CCCEEEECcHHHHHHHHHHHhc--------CCCCEEEEccCCcHHHHHHHHH-----
Confidence 346678888999999998764 3455677779999999987653 3678999999999876321100
Q ss_pred CccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHH
Q psy8199 371 SFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVRE 450 (965)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~ 450 (965)
........+.+++. .+.++++++++ +++.+|++|. +.|+.+.+.+ +++|.+
T Consensus 123 ----~l~~~Gi~v~~vd~-----------------~~~e~l~~al~---~~TklV~les-PsNP~l~v~d----l~~I~~ 173 (395)
T PRK05967 123 ----MLKRLGVEVEYYDP-----------------EIGAGIAKLMR---PNTKVVHTEA-PGSNTFEMQD----IPAIAE 173 (395)
T ss_pred ----HHHhcCeEEEEeCC-----------------CCHHHHHHhcC---cCceEEEEEC-CCCCCCcHHH----HHHHHH
Confidence 01111123333322 12356777775 4578899997 6888776665 999999
Q ss_pred HHHhcCCeEEEeccccCCCcccccccccccCCCcceee--eccccCC-CcccceeeeecHHHHHhhhccCCcccccccCC
Q psy8199 451 ICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLC--LSKGITG-GYLPLSLVMTTDKIYNSIYYKNNINIFLHSHS 527 (965)
Q Consensus 451 l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt--~sK~l~g-G~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t 527 (965)
+|+++|+++|+|+++... ..+.-.....|+++ .+|.++| |-.-.|+++++++.++.+... . ...|
T Consensus 174 la~~~g~~vvVD~t~a~p------~~~~pl~~GaDivv~S~tKy~~Gh~d~~~G~v~~~~~~~~~l~~~---~-~~~G-- 241 (395)
T PRK05967 174 AAHRHGAIVMMDNTWATP------LYFRPLDFGVDISIHAATKYPSGHSDILLGTVSANEKCWPQLLEA---H-GTLG-- 241 (395)
T ss_pred HHHHhCCEEEEECCccCc------eecChhHcCCCEEEEecccccCCCCCeeEEEEEcCHHHHHHHHHH---H-HHcC--
Confidence 999999999999998632 11222334567774 6798877 224456677777765554320 0 0112
Q ss_pred CCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHccc-----CCCcee----------eeeceeEEEEEEEe
Q psy8199 528 YSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLI-----THPKII----------NFRQKGMIWAFDVI 589 (965)
Q Consensus 528 ~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~-----~~~~i~----------~v~g~G~~~~i~~~ 589 (965)
-..+|..+...+..|+.+.- -.++-.++...+.+.|++-. .+|++. ...|-|.+++|++.
T Consensus 242 ~~~~p~da~l~~rgl~Tl~l--R~~~~~~na~~lA~~L~~hp~v~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~ 316 (395)
T PRK05967 242 LCAGPDDTYQILRGLRTMGI--RLEHHRKSALEIARWLEGRPDVARVLHPALPSFPGHEIWKRDFSGASGIFSFVLA 316 (395)
T ss_pred CCCCHHHHHHHHcCcccHHH--HHHHHHHHHHHHHHHHHhCCCCcEEECCCCCCCccHHHHHHhCCCCceEEEEEEc
Confidence 23567777766666655432 13444555556666665431 233322 12466889999985
|
|
| >PLN02509 cystathionine beta-lyase | Back alignment and domain information |
|---|
Probab=99.34 E-value=1e-10 Score=132.88 Aligned_cols=237 Identities=14% Similarity=0.180 Sum_probs=149.4
Q ss_pred CCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCcc
Q psy8199 294 LTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFK 373 (965)
Q Consensus 294 ~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~ 373 (965)
..++...+++++++++. +.+.+++++||+.|+.+++.+. .++++||+.++.|+++.......
T Consensus 130 ~gnpt~~aLE~~lA~le--g~e~ai~~~SG~aAi~~il~ll---------~~GD~VI~~~~~y~~t~~ll~~~------- 191 (464)
T PLN02509 130 SGNPTRDALESLLAKLD--KADRAFCFTSGMAALSAVTHLI---------KNGEEIVAGDDVYGGSDRLLSQV------- 191 (464)
T ss_pred CCCHHHHHHHHHHHHHh--CCCEEEEeCcHHHHHHHHHHHh---------CCCCEEEEcCCchhhHHHHHHHH-------
Confidence 34567888889999987 4567888899998876555322 36788999999987652111000
Q ss_pred chhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHH
Q psy8199 374 EIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICN 453 (965)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~ 453 (965)
.......+.+++. .|++++++++. +++.+|++|. +.|++|.+.+ +++|.++|+
T Consensus 192 --l~~~G~~v~~vd~-----------------~d~e~l~~ai~---~~TklV~les-PsNPtG~i~D----l~~I~~lAk 244 (464)
T PLN02509 192 --VPRSGVVVKRVNT-----------------TNLDEVAAAIG---PQTKLVWLES-PTNPRQQISD----IRKIAEMAH 244 (464)
T ss_pred --HHHCCeEEEEeCC-----------------CCHHHHHHhCC---cCCeEEEEEC-CCCCCCCHHH----HHHHHHHHH
Confidence 0000111223221 25677887774 4567888888 8999998765 999999999
Q ss_pred hcCCeEEEeccccCCCcccccccccccCCCcceee--eccccCC-Ccccceeeeec-HHHHHhhhccCCcccccccCCCC
Q psy8199 454 NYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLC--LSKGITG-GYLPLSLVMTT-DKIYNSIYYKNNINIFLHSHSYS 529 (965)
Q Consensus 454 ~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt--~sK~l~g-G~~pig~v~~~-~~i~~~~~~~~~~~~~~~~~t~~ 529 (965)
+||+++|+||++. .+..+. -.+...|+++ ++|.++| |-.-.|++.++ +.+.+.+.. ........
T Consensus 245 ~~g~~lIVD~A~a-~~~~~~-----pl~~gaDivv~S~tK~l~G~gdv~gG~v~~~~~~l~~~~~~------~~~~~g~~ 312 (464)
T PLN02509 245 AQGALVLVDNSIM-SPVLSR-----PLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYF------LQNSEGSG 312 (464)
T ss_pred HcCCEEEEECCcc-ccccCC-----hhhcCCcEEEecCcccccCCCccceeEEEeccHHHHHHHHH------HHHhcCCC
Confidence 9999999999984 322222 1234568875 5798877 31224555554 344443221 01111122
Q ss_pred CCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHccc-----CCCcee----------eeeceeEEEEEEEe
Q psy8199 530 GNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLI-----THPKII----------NFRQKGMIWAFDVI 589 (965)
Q Consensus 530 ~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~-----~~~~i~----------~v~g~G~~~~i~~~ 589 (965)
.+|..++.++..|+.+.. ..++..++.+++.+.|++.. .+|++. ...|-|.|+.|++.
T Consensus 313 l~p~~A~l~lr~L~tL~~--R~~r~~~nA~~la~~L~~~p~V~~V~yPgL~~~p~~~l~~~~~~g~gg~~sf~~~ 385 (464)
T PLN02509 313 LAPFDCWLCLRGIKTMAL--RIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITG 385 (464)
T ss_pred cCHHHHHHHHhhhhhHHH--HHHHHHHHHHHHHHHHhcCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEeC
Confidence 478888888888887743 46777778888888887542 234322 13466889999873
|
|
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=4e-10 Score=137.88 Aligned_cols=313 Identities=15% Similarity=0.127 Sum_probs=183.6
Q ss_pred HHHHHHHHHHHhhcCCCCCeEEEc-CChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccch
Q psy8199 297 KPVIKLSEKLSSLTQYKLGHCFYG-SDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEI 375 (965)
Q Consensus 297 ~~~~~la~~l~~~~~~~~~~v~~~-~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~ 375 (965)
+...++.+.++++++ .+.+.+. ++|+.|+..++.++|.|+..+|..+|++|++. .+-||+...+....|
T Consensus 542 ~~i~e~q~~l~eltG--~d~~sl~~~~ga~ge~agL~a~r~~~~~~G~~~r~~vlis-~~aH~snp~sa~~~G------- 611 (954)
T PRK05367 542 ELIDQLEAWLAEITG--YDAVSLQPNAGAQGEYAGLLAIRAYHESRGEGHRDVCLIP-SSAHGTNPASAVMAG------- 611 (954)
T ss_pred HHHHHHHHHHHHHHC--CCCEEECccHHHHHHHHHHHHHHHHhhccCCCCCCEEEEE-chhhhhhHHHHHHCC-------
Confidence 455678889999995 5566664 47788888888888888777776556666555 566776544332222
Q ss_pred hcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcc-cCChHHHHHHHHHHHh
Q psy8199 376 YTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMI-MYDSIYLKLVREICNN 454 (965)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~-~~~~~~l~~l~~l~~~ 454 (965)
..++.++.... +. .|+++|+++++++..++++|++.- ... .|.+ .+ +++|.++|++
T Consensus 612 -----~~vv~v~~d~~-G~-----------iD~~~L~~~i~~~~~~la~V~it~-pst-~G~~e~~----I~eI~~i~h~ 668 (954)
T PRK05367 612 -----MKVVVVACDEN-GN-----------IDLDDLRAKAEEHADNLAAIMITY-PST-HGVFEET----IREICEIVHE 668 (954)
T ss_pred -----CEEEEECCCCC-CC-----------cCHHHHHHHHhccCCCeEEEEEEc-CCC-CeeecCC----HHHHHHHHHH
Confidence 23455554321 11 478999999976545677776643 233 3443 45 8999999999
Q ss_pred cCCeEEEeccccCCCcccccccccccCCCcceeeec--cccC----CCcccceeeeecHHHHHhhhccCC-cccccc-cC
Q psy8199 455 YNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS--KGIT----GGYLPLSLVMTTDKIYNSIYYKNN-INIFLH-SH 526 (965)
Q Consensus 455 ~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~s--K~l~----gG~~pig~v~~~~~i~~~~~~~~~-~~~~~~-~~ 526 (965)
+|+++++|.++.+ +-.+. . .--....|+++++ |.++ +|+-.+|.+.+++.+...+..... ...... .+
T Consensus 669 ~G~~v~VDgA~~~-al~~l--~-~pg~~GADi~~~s~HK~f~~P~G~GGPg~G~l~vr~~l~p~lpg~~v~~~~~~~~~g 744 (954)
T PRK05367 669 HGGQVYLDGANMN-AQVGL--A-RPGDIGADVSHLNLHKTFCIPHGGGGPGVGPIGVKAHLAPFLPGHPVQIAGGETGIG 744 (954)
T ss_pred cCCEEEEECcChh-hccCC--C-ChhhcCCCEEEecCcccCCCCcCCCCCceEEEeecccccccCCCCccCcCCCCCCcC
Confidence 9999999999952 11111 1 1112347998876 8653 443457778888766654432100 000000 01
Q ss_pred CCCCCHH----HHHHHHHHHHHHhcccHHHHHH---HHHHHHHHHHHcccCCCcee---eeeceeEEEEEEEeecCccch
Q psy8199 527 SYSGNPL----ACCAALATLEIFNKDNILQRIS---QDMKKITKALTSLITHPKII---NFRQKGMIWAFDVIIEDPEQI 596 (965)
Q Consensus 527 t~~~~~~----~~aaa~a~L~~~~~~~~~~~~~---~~~~~l~~~L~~l~~~~~i~---~v~g~G~~~~i~~~~~~~~~~ 596 (965)
+....+. .+..+...+..+-.+++.+..+ .+.+++.++|++....+... .+.. . +.+++..-....
T Consensus 745 ~v~ta~~g~al~~~~a~~yi~~~G~~Glr~~a~~~~~~A~Yl~~~L~~~~~~~~~~~~~~~~~-e--~i~~~~~~~~~~- 820 (954)
T PRK05367 745 AVSAAPFGSASILPISWMYIRMMGAEGLRQATEVAILNANYIAKRLKDHYPVLYTGANGRVAH-E--CILDLRPLKEST- 820 (954)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhhcCccccCCCCCccc-c--eEEEeecccccC-
Confidence 2222233 1112333344444455655555 78889999887642111000 1111 1 222221000000
Q ss_pred hhHHHHHHHHHHHcCcEEee----cCCEEEEeCCcccCHHHHHHHHHhhhcccccHHH
Q psy8199 597 ETFSKKFFVAALKNELLLRP----IGNTVYLMPPYILNKNEIQHMTSAIFQTFNELDE 650 (965)
Q Consensus 597 ~~~~~~~~~~l~~~Gi~~~~----~~~~lR~~p~~~~t~~~i~~~~~~l~~~~~~~~e 650 (965)
......+.++|.+.|+.... ..+.++++|.-..+.+++|++++++.....+..+
T Consensus 821 g~~~~di~krL~d~G~~~~t~~~pv~~~l~i~ptE~~s~~elDr~~~al~~i~~e~~~ 878 (954)
T PRK05367 821 GITVDDIAKRLIDYGFHAPTMSFPVAGTLMVEPTESESKAELDRFCDAMIAIRAEIDE 878 (954)
T ss_pred CCCHHHHHHHHHHCCCeEeecCCccCCEEEEEeeecCCHHHHHHHHHHHHHHHHHHHH
Confidence 11245688999999987643 3578999999999999999999998766554443
|
|
| >PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.6e-10 Score=127.32 Aligned_cols=270 Identities=16% Similarity=0.104 Sum_probs=158.0
Q ss_pred HHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHH-HHhcCCCCceEEEEEcCCccCCccccccccCCcCccch
Q psy8199 297 KPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHY-WYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEI 375 (965)
Q Consensus 297 ~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~-~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~ 375 (965)
+...++.++++++++ .+++++++||++|+..|+.++... ....+-.++++||+..++|.+........+.
T Consensus 63 ~~~~~fe~~lA~~~g--~~~~v~~~sGt~al~~aL~al~~~~~~~~~~~pGd~VIv~~~t~~a~~~~v~~~G~------- 133 (438)
T PRK15407 63 RFNDAFEKKLAEFLG--VRYALLVNSGSSANLLAFSALTSPKLGDRALKPGDEVITVAAGFPTTVNPIIQNGL------- 133 (438)
T ss_pred hhHHHHHHHHHHHhC--CCeEEEECCHHHHHHHHHHHHhhccccccCCCCCCEEEECCCCcHHHHHHHHHcCC-------
Confidence 446789999999985 568999999999999999866321 0011223568899999999766433322221
Q ss_pred hcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhc
Q psy8199 376 YTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNY 455 (965)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~ 455 (965)
..++++....... .|++++++++. +++++|++.+ + .|... .+++|+++|++|
T Consensus 134 ------~pv~vdvd~~~~~-----------id~~~le~~i~---~~tkaVi~~~-~---~G~p~----dl~~I~~la~~~ 185 (438)
T PRK15407 134 ------VPVFVDVELPTYN-----------IDASLLEAAVS---PKTKAIMIAH-T---LGNPF----DLAAVKAFCDKH 185 (438)
T ss_pred ------EEEEEecCCCcCC-----------cCHHHHHHHcC---cCCeEEEEeC-C---CCChh----hHHHHHHHHHHC
Confidence 1223332110111 26788888874 4567777766 3 34322 389999999999
Q ss_pred CCeEEEeccccCCCcccccccccccCCCcceeeec----cccCCCcccceeeeecH-HHHHhhh---ccCCcc-------
Q psy8199 456 NIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS----KGITGGYLPLSLVMTTD-KIYNSIY---YKNNIN------- 520 (965)
Q Consensus 456 g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~s----K~l~gG~~pig~v~~~~-~i~~~~~---~~~~~~------- 520 (965)
|++||.|++|+ +|-.-. -...|-.-|+.+|| |.++.| .-|+++.++ ++.+.+. ..+...
T Consensus 186 gi~vIeDaa~a-~G~~~~---g~~~G~~gd~~~fSf~~~k~~~~g--eGG~l~t~d~~l~~~~~~~~~~G~~~~~~~~~~ 259 (438)
T PRK15407 186 NLWLIEDNCDA-LGSTYD---GRMTGTFGDIATLSFYPAHHITMG--EGGAVFTNDPLLKKIIESFRDWGRDCWCAPGCD 259 (438)
T ss_pred CCEEEEECccc-hhhhcC---CeeeeccCceEEEeCCCCCCcccc--CceEEEECCHHHHHHHHHHHHhCcccccccccc
Confidence 99999999997 542211 01112223777775 667655 237777764 4433222 111100
Q ss_pred --------------c------c---cccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcccCCCceeee
Q psy8199 521 --------------I------F---LHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINF 577 (965)
Q Consensus 521 --------------~------~---~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v 577 (965)
+ + ..|..+.-+.+.+|.++.-|+.+. +..++-+++.+++.+.|..+...-.+...
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~n~rmsel~AAig~~qL~~l~--~~~~~R~~~a~~y~~~L~~~~~~~~~~~~ 337 (438)
T PRK15407 260 NTCGKRFGWQLGELPFGYDHKYTYSHLGYNLKITDMQAAIGLAQLEKLP--GFIEARKANFAYLKEGLASLEDFLILPEA 337 (438)
T ss_pred cccccccccccccccccccccccccccccccCccHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhccCCCccccCcC
Confidence 0 0 123445567888888888888764 35677778888888888654210001111
Q ss_pred -ec-eeE--EEEEEEeecCccchhhHHHHHHHHHHHcCcEEe
Q psy8199 578 -RQ-KGM--IWAFDVIIEDPEQIETFSKKFFVAALKNELLLR 615 (965)
Q Consensus 578 -~g-~G~--~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~ 615 (965)
.+ ... ++.+.+. +.. ....+++.+.|.++||-.+
T Consensus 338 ~~~~~~~~~~~~i~~~--~~~--~~~Rd~l~~~L~~~GI~~~ 375 (438)
T PRK15407 338 TPNSDPSWFGFPITVK--EDA--GFTRVELVKYLEENKIGTR 375 (438)
T ss_pred CCCCeeEEEEEEEEEC--CcC--CCCHHHHHHHHHHCCCCcc
Confidence 11 122 2333332 110 1124578889999999654
|
|
| >TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.4e-10 Score=117.61 Aligned_cols=157 Identities=15% Similarity=0.276 Sum_probs=115.9
Q ss_pred cCCCCCCCCCCCCCCcCCCCcccccCCCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHhcCcEeEE
Q psy8199 689 TGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCL 768 (965)
Q Consensus 689 s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~~~~i~~ 768 (965)
|++||.+|.||..+... .......++++++.+.+.... ..++.+.++|| +|+... + +.++++.+++.++.+.+
T Consensus 23 t~~Cnl~C~~C~~~~~~--~~~~~~~~~~~~i~~~i~~~~-~~~~~i~~sGG-EPll~~--~-l~~li~~~~~~g~~v~i 95 (191)
T TIGR02495 23 FQGCNLKCPYCHNPELI--DREGSGEIEVEFLLEFLRSRQ-GLIDGVVITGG-EPTLQA--G-LPDFLRKVRELGFEVKL 95 (191)
T ss_pred cCCCCCCCCCCCCcccc--CCCCCCcCCHHHHHHHHHHhc-CCCCeEEEECC-cccCcH--h-HHHHHHHHHHCCCeEEE
Confidence 89999999999875321 112234589999999988653 24678888775 465542 2 77777777777777766
Q ss_pred ecCCCCHHHHHHHHHhC-CCeEeccCCCCHHHHhcccC-CCCHH-HHHHHHHHHHHcCCceeeeEEEecC-CCHHHHHHH
Q psy8199 769 TLGMLNENQAYRLKKVG-LDYYNHNLDTSPKLYGDIIS-TRDYE-NRLNTLKNVRNVGINICCGGIIGLS-ESRDQRAEL 844 (965)
Q Consensus 769 ~~~~~~~e~l~~Lk~aG-~~~i~i~~es~~~~~~~i~~-~~~~~-~~~~~i~~~~~~Gi~v~~~~i~Gl~-et~ed~~~~ 844 (965)
.....+++.++.+.++| ++.+.++++++++.+..+.+ +.+++ +.+++++.+++.|+.+....++-.+ ...+++.+.
T Consensus 96 ~TNg~~~~~l~~l~~~g~~~~v~isl~~~~~~~~~~~g~~~~~~~~~~~~i~~l~~~gi~~~i~~~v~~~~~~~~ei~~~ 175 (191)
T TIGR02495 96 DTNGSNPRVLEELLEEGLVDYVAMDVKAPPEKYPELYGLEKNGSNNILKSLEILLRSGIPFELRTTVHRGFLDEEDLAEI 175 (191)
T ss_pred EeCCCCHHHHHHHHhcCCCcEEEEeccCChHHHHHHHCCCCchHHHHHHHHHHHHHcCCCEEEEEEEeCCCCCHHHHHHH
Confidence 43334788899999999 69999999997777777754 45665 8999999999999987766666543 336788888
Q ss_pred HHHHHhcC
Q psy8199 845 IFQLANLN 852 (965)
Q Consensus 845 l~~l~~l~ 852 (965)
++++.+++
T Consensus 176 ~~~l~~~~ 183 (191)
T TIGR02495 176 ATRIKENG 183 (191)
T ss_pred HHHhccCC
Confidence 88887764
|
This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD. |
| >PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.5e-10 Score=131.55 Aligned_cols=246 Identities=15% Similarity=0.154 Sum_probs=151.6
Q ss_pred CCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcC
Q psy8199 292 SNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQS 371 (965)
Q Consensus 292 ~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~ 371 (965)
.+..++....|++.++++.+ .+.+++++||+.|+..++.... .++++|++.++.|++.....
T Consensus 59 ~r~~~p~~~~Le~~lA~leg--~~~al~~~sG~~Ai~~al~~ll--------~~GD~Vlv~~~~y~~t~~~~-------- 120 (431)
T PRK08248 59 TRIMNPTTDVFEKRIAALEG--GIGALAVSSGQAAITYSILNIA--------SAGDEIVSSSSLYGGTYNLF-------- 120 (431)
T ss_pred ECCCCchHHHHHHHHHHHhC--CCcEEEECCHHHHHHHHHHHHh--------CCCCEEEEccCchhhHHHHH--------
Confidence 45567778899999999985 5788999999999999987653 25688999988886642111
Q ss_pred ccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHH
Q psy8199 372 FKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREI 451 (965)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l 451 (965)
..........+.+++. .|+++++++++ +++.+|+++. +.|++|.+.+ +++|.++
T Consensus 121 -~~~~~~~Gv~v~~vd~-----------------~d~e~l~~ai~---~~tklV~l~s-p~NPtG~v~d----i~~I~~l 174 (431)
T PRK08248 121 -AHTLPKLGITVKFVDP-----------------SDPENFEAAIT---DKTKALFAET-IGNPKGDVLD----IEAVAAI 174 (431)
T ss_pred -HHHHHhCCEEEEEECC-----------------CCHHHHHHhcC---CCCeEEEEEC-CCCCCCcccC----HHHHHHH
Confidence 0001111123344432 25788888875 3567788887 7899999887 8899999
Q ss_pred HHhcCCeEEEeccccCCCcccccccccccCCCcceee--eccccCCCcccceeeeec-HHHH-H---h---hhcc-----
Q psy8199 452 CNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLC--LSKGITGGYLPLSLVMTT-DKIY-N---S---IYYK----- 516 (965)
Q Consensus 452 ~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt--~sK~l~gG~~pig~v~~~-~~i~-~---~---~~~~----- 516 (965)
|+++|+++|+|+++.. +.. ..-.....|+++ ++|.++|....+|++++. .+.. . . +...
T Consensus 175 a~~~gi~vIvD~t~a~-~~~-----~~pl~~gaDivv~S~tK~lgg~g~~~Gg~v~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (431)
T PRK08248 175 AHEHGIPLIVDNTFAS-PYL-----LRPIEHGADIVVHSATKFIGGHGTSIGGVIVDSGKFDWKGSGKFPGLTEPDPSYH 248 (431)
T ss_pred HHHcCCEEEEeCCCCc-ccc-----CChhHcCCCEEEEcCccccCCCCCceEEEEEeCCccccccccccccccCCccccc
Confidence 9999999999999751 111 111133468875 569888743577766653 3210 0 0 0000
Q ss_pred --------C-------CcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHccc-----CCCceee
Q psy8199 517 --------N-------NINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLI-----THPKIIN 576 (965)
Q Consensus 517 --------~-------~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~-----~~~~i~~ 576 (965)
+ .............+|..+...+..|+.+.. ..++-.++..++.+.|++.. .+|++..
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~p~~a~l~~rgl~tl~~--R~~~~~~nA~~la~~L~~~p~v~~V~yPgl~s 326 (431)
T PRK08248 249 GLVYTDAVGEAAYITKARVQLLRDLGAALSPFNSFLLLQGLETLHL--RMERHSENALAVAKFLEEHEAVEWVSYPGLPS 326 (431)
T ss_pred cchhhhhhchhhHHHHHHHHHHHhcCCCCCHHHHHHHhcCcCcHHH--HHHHHHHHHHHHHHHHHhCCCcceEECCCCCC
Confidence 0 000000111234566666666665554421 35666677778888877542 2333221
Q ss_pred ----------e-eceeEEEEEEEe
Q psy8199 577 ----------F-RQKGMIWAFDVI 589 (965)
Q Consensus 577 ----------v-~g~G~~~~i~~~ 589 (965)
. .|-|.|++|++.
T Consensus 327 ~p~~~~~~~~~~~g~gg~~sf~l~ 350 (431)
T PRK08248 327 HPSYELAKKYLPKGQGAILTFGIK 350 (431)
T ss_pred CccHHHHHHhCcCCCceEEEEEec
Confidence 1 356889999985
|
|
| >PRK03080 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.3e-10 Score=130.99 Aligned_cols=315 Identities=10% Similarity=0.010 Sum_probs=178.6
Q ss_pred CHH-HHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCC-CCCeEEEcC-ChhHHHHHHHHHHHHHHHhcCCCCceE
Q psy8199 272 NSY-INKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQY-KLGHCFYGS-DGASAVEVALKMSFHYWYNKGFLNKKK 348 (965)
Q Consensus 272 ~p~-v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~-~~~~v~~~~-sGseA~~~Al~~a~~~~~~~g~~~~~~ 348 (965)
+|+ |.+|+...+-.. .+......+...+..+.++++++. ..++|+|++ |||++++.++..... +++..
T Consensus 24 ~~~~v~~a~~~~~~~~--~hr~~~f~~~~~~~r~~l~~l~~~~~~~~v~~~~gs~T~~~~~~~~~l~~-------~~~~~ 94 (378)
T PRK03080 24 RPGWQLEALADALLGR--SHRQKPVKALLKRVIEGTRELLSLPEGYEVGIVPGSDTGAWEMALWSLLG-------ARRVD 94 (378)
T ss_pred ChHHHHHHHHhhhccc--CcCCHHHHHHHHHHHHHHHHHhCCCCCceEEEECCchHHHHHHHHHhcCC-------CCcce
Confidence 677 888887543211 111222345556777788888874 234788875 999999999875521 12333
Q ss_pred EEEEcCCccCCccccccccCCcCccchhcccCC-CeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEE
Q psy8199 349 FICLQNSYHGETLGALAVTNIQSFKEIYTSLLN-KTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIII 427 (965)
Q Consensus 349 vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ 427 (965)
++. . +.||........ ..... ++..++.+... . .|++++ +. . + .|.+
T Consensus 95 vi~-~-g~f~~~~~~~~~----------~~~g~~~v~~~~~~~g~--~----------~d~~~i----~~-~-~--~V~~ 142 (378)
T PRK03080 95 HLA-W-ESFGSKWATDVV----------KQLKLEDPRVLEADYGS--L----------PDLSAV----DF-D-R--DVVF 142 (378)
T ss_pred EEE-e-CHHHHHHHHHHH----------hhcCCCCceEeccCCCC--C----------CCHhhc----CC-C-C--CEEE
Confidence 333 3 566663221100 00111 33333332110 0 123332 21 1 2 2344
Q ss_pred ccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcceeeec--cccCCCcccceeeee
Q psy8199 428 EPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS--KGITGGYLPLSLVMT 505 (965)
Q Consensus 428 ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~s--K~l~gG~~pig~v~~ 505 (965)
.- +.+.+|.+.| +++|.+ +++|+++|+|-+|+ +|.. .+..+ + .|++++| |.|+|. ..+|.+..
T Consensus 143 ~h-~~t~tG~~~p----i~~I~~--~~~g~~~vVDa~qs-~G~~--pidv~--~--iD~~~~s~~K~l~~P-~G~g~l~v 207 (378)
T PRK03080 143 TW-NGTTTGVRVP----VARWIG--ADREGLTICDATSA-AFAL--PLDWS--K--LDVYTFSWQKVLGGE-GGHGMAIL 207 (378)
T ss_pred Ee-cCCccceecc----chhhcc--ccCCCeEEEecccc-cccC--CCCHH--H--CcEEEEehhhhCCCC-CceEEEEE
Confidence 44 5678899998 777777 78899999999987 5422 22222 2 4888876 888774 35889999
Q ss_pred cHHHHHhhhccC-Ccc--------------c-ccccCCCCCC-HHHHHHHHHHHHHHhcc-c---HHHHHHHHHHHHHHH
Q psy8199 506 TDKIYNSIYYKN-NIN--------------I-FLHSHSYSGN-PLACCAALATLEIFNKD-N---ILQRISQDMKKITKA 564 (965)
Q Consensus 506 ~~~i~~~~~~~~-~~~--------------~-~~~~~t~~~~-~~~~aaa~a~L~~~~~~-~---~~~~~~~~~~~l~~~ 564 (965)
+++.++.+.... .+. . ...++|.+.. ..+..+..++|+.+.+. + ..++.+++.+++++.
T Consensus 208 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gG~e~i~~r~~~l~~~l~~~ 287 (378)
T PRK03080 208 SPRAVERLESYTPARPIPKFFRLTKGGKAIENSFKGQTINTPSMLTVEDYLDQLDWANSIGGLDALIARTAANASVLYDW 287 (378)
T ss_pred CHHHHHhhhcccCCCCCchhheeccchHHhhhhhcCCcccCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 998887654310 000 0 0112343333 33555667888887654 3 445666677777777
Q ss_pred HHcccCCCcee-eeece-eEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec-----CCEEEEeCCcccCHHHHHHH
Q psy8199 565 LTSLITHPKII-NFRQK-GMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-----GNTVYLMPPYILNKNEIQHM 637 (965)
Q Consensus 565 L~~l~~~~~i~-~v~g~-G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-----~~~lR~~p~~~~t~~~i~~~ 637 (965)
|+++.....+. .-... +.+..+.+. +. .......+...+.++|++++.+ ++.+|+++....+.++++.+
T Consensus 288 l~~~~~~~~~~~~~~~~s~~i~~~~~~--~~--~~~~~~~~~~~l~~~~i~v~~g~~~~~~~~vRis~~~~~t~~di~~l 363 (378)
T PRK03080 288 AEKTPWATPLVADPATRSNTSVTLDFV--DA--QAAVDAAAVAKLLRENGAVDIEPYRDAPNGLRIWCGPTVEPADVEAL 363 (378)
T ss_pred HHhCCCcccccCCccccCccEEEEEcC--Cc--hHHHHHHHHHHHHHcCCeeccccccCCCCcEEEecCCCCCHHHHHHH
Confidence 77652111111 00112 245666543 10 0012223556677778887642 36899999999999999999
Q ss_pred HHhhhcccc
Q psy8199 638 TSAIFQTFN 646 (965)
Q Consensus 638 ~~~l~~~~~ 646 (965)
++.+.+++.
T Consensus 364 ~~al~~~~~ 372 (378)
T PRK03080 364 TPWLDWAFE 372 (378)
T ss_pred HHHHHHHHH
Confidence 999876543
|
|
| >PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.1e-10 Score=127.77 Aligned_cols=243 Identities=14% Similarity=0.167 Sum_probs=154.5
Q ss_pred CCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCcc
Q psy8199 294 LTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFK 373 (965)
Q Consensus 294 ~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~ 373 (965)
..++....|++.++++.+ ...++.++||+.|+.+++..+. .++++||+....|.+.......
T Consensus 58 ~~nPtv~~lE~~la~leg--~~~av~~~SG~aAi~~al~all--------~~GD~VI~~~~~Y~~T~~~~~~-------- 119 (432)
T PRK06702 58 IGNPTLAAFEQKLAELEG--GVGAVATASGQAAIMLAVLNIC--------SSGDHLLCSSTVYGGTFNLFGV-------- 119 (432)
T ss_pred CCCcHHHHHHHHHHHHhC--CCcEEEECCHHHHHHHHHHHhc--------CCCCEEEECCCchHHHHHHHHH--------
Confidence 346778999999999984 4678889999999999998653 3678999999999765221000
Q ss_pred chhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHH
Q psy8199 374 EIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICN 453 (965)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~ 453 (965)
........+.++... .|+++++++|. +++.+|++|. +.|+++.+++ +++|.++|+
T Consensus 120 -~l~~~Gi~v~~vd~~----------------~d~~~l~~~I~---~~Tk~I~~e~-pgnP~~~v~D----i~~I~~iA~ 174 (432)
T PRK06702 120 -SLRKLGIDVTFFNPN----------------LTADEIVALAN---DKTKLVYAES-LGNPAMNVLN----FKEFSDAAK 174 (432)
T ss_pred -HHHHCCCEEEEECCC----------------CCHHHHHHhCC---cCCeEEEEEc-CCCccccccC----HHHHHHHHH
Confidence 011111233343220 26788888885 3567888998 7888888877 999999999
Q ss_pred hcCCeEEEeccccCCCcccccccccccCCCccee--eeccccCCCcccce-eeeecH----------HHHH---------
Q psy8199 454 NYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL--CLSKGITGGYLPLS-LVMTTD----------KIYN--------- 511 (965)
Q Consensus 454 ~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDiv--t~sK~l~gG~~pig-~v~~~~----------~i~~--------- 511 (965)
+||+++|+|+++. .+..++-+....|++ +++|-++|...-+| +++... ++.+
T Consensus 175 ~~gi~livD~T~~------tP~~~~pl~~GADIvv~S~TKy~~Ghsd~l~G~v~~~~~~~w~~~~~~~l~~~~~~~~~~~ 248 (432)
T PRK06702 175 ELEVPFIVDNTLA------TPYLCQAFEHGANIIVHSTTKYIDGHASSLGGIVIDGGNFDWTNGKYPELVEPDPSYHGVS 248 (432)
T ss_pred HcCCEEEEECCCC------chhhCChhhcCCCEEEEccccccCCCcceeceEEEeCCCcccccccccccccccccccccc
Confidence 9999999999863 123344344557877 47897776222333 333211 1110
Q ss_pred --------h-hhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHccc-----CCCceee-
Q psy8199 512 --------S-IYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLI-----THPKIIN- 576 (965)
Q Consensus 512 --------~-~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~-----~~~~i~~- 576 (965)
. +.. .............+|..+..++..|+.+. -..++-.++...+.+.|++.. .+|++..
T Consensus 249 ~~~~~~~~~~~~~--~~~~~~~~~g~~~sp~~a~l~~rgL~Tl~--lR~~r~~~Na~~la~~L~~~p~V~~V~yPgl~~~ 324 (432)
T PRK06702 249 YVQNFGAAAYIVK--ARVQLLRDYGNCMSPFNAYISNIGLETLH--LRMERHSENALAVAKWLADHERIEWVNYPGLDSN 324 (432)
T ss_pred hhhccchhhHHHH--HHHHHHHHccCCCCHHHHHHHHhccCcHH--HHHHHHHHHHHHHHHHHHhCCCcceEECCCCCCC
Confidence 0 000 00001112334778998888888887553 235666678888888887542 2344321
Q ss_pred ---------e-eceeEEEEEEEe
Q psy8199 577 ---------F-RQKGMIWAFDVI 589 (965)
Q Consensus 577 ---------v-~g~G~~~~i~~~ 589 (965)
. .|-|.|+.|++.
T Consensus 325 p~~~l~~~~~~~g~gg~~sf~l~ 347 (432)
T PRK06702 325 ENYSLAQKYLKKGASGVLTFGIK 347 (432)
T ss_pred ccHHHHHHhCcCCCceEEEEEec
Confidence 1 467889999985
|
|
| >PRK04311 selenocysteine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.1e-09 Score=122.23 Aligned_cols=332 Identities=13% Similarity=0.107 Sum_probs=190.3
Q ss_pred EEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhcccc--cc-CCCCcHHHHHHHHHHHhhcCCCCCeEEEcCCh
Q psy8199 247 KLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHV--ML-SNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDG 323 (965)
Q Consensus 247 ~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~--~~-~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sG 323 (965)
.++...|..|.+..+... -++++.+|+.+.+...... .. .+...+....+.+.++++++ .+.+++++||
T Consensus 80 ~vinatg~v~~tNlg~s~------l~~~v~eav~~~~~~~~~le~~l~~g~~g~r~~~~e~~lA~l~G--ae~a~vv~sg 151 (464)
T PRK04311 80 PVINATGVVLHTNLGRAL------LSEAAIEAVTEAARGYSNLEYDLATGKRGSRDRALAALLCALTG--AEDALVVNNN 151 (464)
T ss_pred ceecCCccEEeccCCCCC------CCHHHHHHHHHHHhcccccccchhhcccchHHHHHHHHHHHHhC--CCeEEEECCH
Confidence 466666766666543311 4789999999887654211 01 12223445688899999985 5678899999
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCceEEEEEcCC-cc-CCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChh
Q psy8199 324 ASAVEVALKMSFHYWYNKGFLNKKKFICLQNS-YH-GETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSAN 401 (965)
Q Consensus 324 seA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~-yH-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (965)
+.|+..++... .++++||+.++. || |.+... ............++...+ .
T Consensus 152 taAl~l~l~~l---------~~GdeVIvs~~e~~~~ggs~~i---------~~~~~~~G~~l~~v~~~~---~------- 203 (464)
T PRK04311 152 AAAVLLALNAL---------AAGKEVIVSRGELVEIGGAFRI---------PDVMRQAGARLVEVGTTN---R------- 203 (464)
T ss_pred HHHHHHHHHHh---------CCCCEEEEcchhhhhcCcchhh---------HHHHHHCCcEEEEECCCC---C-------
Confidence 99999888543 356778887763 32 221110 000001111223333211 0
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEEEccccccC--CC--cccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccc----
Q psy8199 402 EIARCAIFDLEILLKKNHNKIAAIIIEPLVQCA--GG--MIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK---- 473 (965)
Q Consensus 402 ~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~--~G--~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~---- 473 (965)
.++++++++|. +++++|+++. ..|. .| ...+ +++|.++|++||+++|+|.. .|-.+.
T Consensus 204 ----t~~~dle~aI~---~~TklV~~vh-~sN~~i~G~~~~~d----l~eI~~lak~~gi~vivD~g---sG~l~~~~~~ 268 (464)
T PRK04311 204 ----THLRDYEQAIN---ENTALLLKVH-TSNYRIEGFTKEVS----LAELAALGKEHGLPVVYDLG---SGSLVDLSQY 268 (464)
T ss_pred ----CCHHHHHHhcC---ccCeEEEEEc-CCCccccccCCcCC----HHHHHHHHHHcCCeEEEECC---Ccccccchhc
Confidence 24678888885 3567777766 4443 34 3445 99999999999999999984 222221
Q ss_pred -----cccccccCCCcceeeec--cccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh
Q psy8199 474 -----FFACEHAEIWPDFLCLS--KGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN 546 (965)
Q Consensus 474 -----~~~~~~~~~~pDivt~s--K~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~ 546 (965)
....+......|+++|| |.++|. ..|++++++++++.+...+ ..-.+..+-...++-.++|....
T Consensus 269 gl~~~p~~~~~l~~GaDiv~fSg~K~LgGp--~~G~i~g~~~li~~l~~~~------~~r~lr~dk~~l~~l~~~l~~~~ 340 (464)
T PRK04311 269 GLPDEPTVQELLAAGVDLVTFSGDKLLGGP--QAGIIVGKKELIARLKKHP------LKRALRVDKLTLAALEATLRLYL 340 (464)
T ss_pred cCCCCCchhhHHhcCCcEEEecCcccccCC--ceEEEEEcHHHHHHHhhch------hHHHHhcchHHHHHHHHHHHHHh
Confidence 11112223468999998 888774 3788889999988775411 11222334445555555555221
Q ss_pred c--ccH------------HHHHHHHHHHHHHHHHcccCCCc--eeeee-----ceeEE-------EEEEEeecCccchhh
Q psy8199 547 K--DNI------------LQRISQDMKKITKALTSLITHPK--IINFR-----QKGMI-------WAFDVIIEDPEQIET 598 (965)
Q Consensus 547 ~--~~~------------~~~~~~~~~~l~~~L~~l~~~~~--i~~v~-----g~G~~-------~~i~~~~~~~~~~~~ 598 (965)
+ +.+ .++..++.+++.+.|+.... ++ +..+. |-|.+ +.+.+. .. .-
T Consensus 341 ~~~~~~~~i~~l~~l~~~~~~~~~~A~~la~~L~~~~~-~~~~~~~~~~~~~~gggs~p~~~~~~~~v~~~-~~----~~ 414 (464)
T PRK04311 341 DPEKLAEEIPTLRLLTRSPEELRARAERLAAALKAALG-AAFAVEVVPSFSQVGGGSLPVDRLPSAAVTLT-PK----DR 414 (464)
T ss_pred ChhhhhhhCcHHHHhcCCHHHHHHHHHHHHHHHHhccC-CCeeEEEEEccCccCCCCCcCCCCCeEEEEEe-CC----CC
Confidence 1 111 25566667777777755311 11 11111 11211 223332 11 11
Q ss_pred HHHHHHHHHHH--cCcEEeecCCEEEEeCCcccCHHHHHHHHHhhhcc
Q psy8199 599 FSKKFFVAALK--NELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQT 644 (965)
Q Consensus 599 ~~~~~~~~l~~--~Gi~~~~~~~~lR~~p~~~~t~~~i~~~~~~l~~~ 644 (965)
.+..+.++|++ -.|+.+...+.+.+-| .++.+++++.+++++.+.
T Consensus 415 ~~~~l~~~lr~~~~~i~~r~~~~~~~ld~-r~~~~~~~~~~~~~~~~~ 461 (464)
T PRK04311 415 SLEALAARLRLLPPPVIGRIEDGRLLLDL-RTLEEEDEERLAAALLEA 461 (464)
T ss_pred CHHHHHHHHhcCCCCEEEEEECCEEEEEe-CcCCHHHHHHHHHHHHHH
Confidence 23467777775 4577777777888875 477888888888887654
|
|
| >PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.29 E-value=2e-10 Score=128.84 Aligned_cols=240 Identities=13% Similarity=0.073 Sum_probs=141.9
Q ss_pred cCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCc
Q psy8199 291 LSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQ 370 (965)
Q Consensus 291 ~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~ 370 (965)
+..+.++....|+++++++.+ .+..++++||+.|+.+++.+. .++++|++.++.|++........
T Consensus 44 y~r~~~p~~~~Le~~la~l~g--~~~al~~~SG~~Al~~~l~~l---------~pGd~Vi~~~~~y~~t~~~~~~~---- 108 (380)
T PRK06176 44 YSRSGNPTRFALEELIADLEG--GVKGFAFASGLAGIHAVFSLF---------QSGDHVLLGDDVYGGTFRLFDKV---- 108 (380)
T ss_pred ccCCCChhHHHHHHHHHHHhC--CCCEEEECCHHHHHHHHHHHc---------CCCCEEEEcCCChhHHHHHHHHH----
Confidence 356677888999999999985 456788899999998666432 25688999998886652111000
Q ss_pred CccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHH
Q psy8199 371 SFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVRE 450 (965)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~ 450 (965)
.......+.+++. .|+++++++++ +++.+|++|. ++|++|.+.+ +++|.+
T Consensus 109 -----~~~~gi~v~~vd~-----------------~d~e~l~~ai~---~~t~lV~les-P~Nptg~~~d----i~~I~~ 158 (380)
T PRK06176 109 -----LVKNGLSCTIIDT-----------------SDLSQIKKAIK---PNTKALYLET-PSNPLLKITD----LAQCAS 158 (380)
T ss_pred -----HHhcCeEEEEcCC-----------------CCHHHHHHhcC---cCceEEEEEC-CCCCCceecC----HHHHHH
Confidence 0111112233322 25778888774 3578888887 7899998876 899999
Q ss_pred HHHhcCCeEEEeccccCCCcccccccccccCCCcceeee--ccccCCCccc-ceeeeec-HHHHHhhhccCCcccccccC
Q psy8199 451 ICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCL--SKGITGGYLP-LSLVMTT-DKIYNSIYYKNNINIFLHSH 526 (965)
Q Consensus 451 l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~--sK~l~gG~~p-ig~v~~~-~~i~~~~~~~~~~~~~~~~~ 526 (965)
+|++||+++|+|++++.. ..+.. .+...|++++ +|.++|..-. .|+++++ +++.+.+.. +....
T Consensus 159 la~~~gi~vivD~t~a~~-~~~~p-----~~~gaDivv~S~tK~l~g~~d~~gG~vv~~~~~~~~~~~~------~~~~~ 226 (380)
T PRK06176 159 VAKDHGLLTIVDNTFATP-YYQNP-----LLLGADIVVHSGTKYLGGHSDVVAGLVTTNNEALAQEIAF------FQNAI 226 (380)
T ss_pred HHHHcCCEEEEECCcccc-ccCCc-----cccCCCEEEecCceeccCCccceeeEEEecHHHHHHHHHH------HHHHh
Confidence 999999999999998632 11221 2345688865 5988762112 3455653 556554432 11111
Q ss_pred CCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHccc-----CCCcee----------eeeceeEEEEEEEe
Q psy8199 527 SYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLI-----THPKII----------NFRQKGMIWAFDVI 589 (965)
Q Consensus 527 t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~-----~~~~i~----------~v~g~G~~~~i~~~ 589 (965)
....+|..+......|+.+.. ..++..++..++.+.|++.. .+|++. ...|-|.+++|++.
T Consensus 227 G~~~~~~~~~l~~~gl~tl~~--R~~~~~~~a~~la~~L~~~p~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~s~~~~ 302 (380)
T PRK06176 227 GGVLGPQDSWLLQRGIKTLGL--RMEAHQKNALCVAEFLEKHPKVEKVYYPGLPTHPNHELAKKQMRGFSGMLSFTLK 302 (380)
T ss_pred cCCCCHHHHHHHHhccCcHHH--HHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEC
Confidence 111245544444444432211 12333344445555554321 123221 13467889999985
|
|
| >COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.2e-09 Score=118.41 Aligned_cols=320 Identities=14% Similarity=0.120 Sum_probs=191.9
Q ss_pred CHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCC-CeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEE
Q psy8199 272 NSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKL-GHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFI 350 (965)
Q Consensus 272 ~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~-~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi 350 (965)
+|+|.+|+.+..-. +.+.-......++.+.|...++... +-+++..||+-|+|+|+..... ++++|+
T Consensus 17 ~~~V~~am~~~~~~----h~s~~F~~~~~~~~~~L~~v~~t~~~~~~ll~gsGt~amEAav~sl~~--------pgdkVL 84 (383)
T COG0075 17 PPRVLLAMARPMVG----HRSPDFVGIMKEVLEKLRKVFGTENGDVVLLSGSGTLAMEAAVASLVE--------PGDKVL 84 (383)
T ss_pred CHHHHHHhcCCCCC----CCCHHHHHHHHHHHHHHHHHhcCCCCcEEEEcCCcHHHHHHHHHhccC--------CCCeEE
Confidence 46666665543211 1111223344566666777775433 5567789999999999987643 678888
Q ss_pred EEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCC--cEEEEEEc
Q psy8199 351 CLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHN--KIAAIIIE 428 (965)
Q Consensus 351 ~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~--~~aaii~e 428 (965)
+...+..|.-+ .....-+..++..+..+.... .++++++++|++.++ -++++.+|
T Consensus 85 v~~nG~FG~R~-----------~~ia~~~g~~v~~~~~~wg~~------------v~p~~v~~~L~~~~~~~~V~~vH~E 141 (383)
T COG0075 85 VVVNGKFGERF-----------AEIAERYGAEVVVLEVEWGEA------------VDPEEVEEALDKDPDIKAVAVVHNE 141 (383)
T ss_pred EEeCChHHHHH-----------HHHHHHhCCceEEEeCCCCCC------------CCHHHHHHHHhcCCCccEEEEEecc
Confidence 88888777632 222222223343333322111 368999999985432 23444455
Q ss_pred cccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcceeee--ccccCCCcccceeeeec
Q psy8199 429 PLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCL--SKGITGGYLPLSLVMTT 506 (965)
Q Consensus 429 p~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~--sK~l~gG~~pig~v~~~ 506 (965)
. ++|+..| +++|.++|++||+++|+|-|-+ +| |..+-.+.||+ |+++- -|+|++- -.+|.+..+
T Consensus 142 T----STGvlnp----l~~I~~~~k~~g~l~iVDaVsS-~G--g~~~~vd~wgi--Dv~itgSQK~l~~P-PGla~v~~S 207 (383)
T COG0075 142 T----STGVLNP----LKEIAKAAKEHGALLIVDAVSS-LG--GEPLKVDEWGI--DVAITGSQKALGAP-PGLAFVAVS 207 (383)
T ss_pred C----cccccCc----HHHHHHHHHHcCCEEEEEeccc-CC--CcccchhhcCc--cEEEecCchhccCC-CccceeEEC
Confidence 4 6888888 9999999999999999999876 65 44566666775 66654 4899874 356788889
Q ss_pred HHHHHhhhccCCc---------cccc---ccCCCCCCHHHHHHHHHHHHHHhccc---HHHHHHHHHHHHHHHHHcccCC
Q psy8199 507 DKIYNSIYYKNNI---------NIFL---HSHSYSGNPLACCAALATLEIFNKDN---ILQRISQDMKKITKALTSLITH 571 (965)
Q Consensus 507 ~~i~~~~~~~~~~---------~~~~---~~~t~~~~~~~~aaa~a~L~~~~~~~---~~~~~~~~~~~l~~~L~~l~~~ 571 (965)
++.++.+...... ..++ ..+.|+.+.....+..++|+.+.+++ ..++-+++++.++++++++ ..
T Consensus 208 ~~a~e~~~~~~~~~~ylDL~~~~~~~~~~~~~p~Tppv~~i~aL~~al~~i~~EGle~r~~RH~~~~~a~r~~~~al-Gl 286 (383)
T COG0075 208 ERALEAIEERKHPSFYLDLKKWLKYMEKKGSTPYTPPVNLIYALREALDLILEEGLEARIARHRRLAEALRAGLEAL-GL 286 (383)
T ss_pred HHHHHHHhcCCCCceeecHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CC
Confidence 9888877652111 0011 22334444456777778999887654 5666777888888888876 11
Q ss_pred Cceeeeecee-EEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec-----CCEEEEeCCcccCHHHHHHHHHhhhccc
Q psy8199 572 PKIINFRQKG-MIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-----GNTVYLMPPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 572 ~~i~~v~g~G-~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-----~~~lR~~p~~~~t~~~i~~~~~~l~~~~ 645 (965)
..+.+..-.. .+..+... .+ ..........+.+.|+.+.++ +..+||.--=..+..++..++.+++.++
T Consensus 287 ~~~~~~~~~s~tvta~~~P--~g---~~~~~~~~~~~~~~g~~i~gg~~~l~gkifRIGhMG~~~~~dv~~~l~ale~~L 361 (383)
T COG0075 287 ELFADPERRSPTVTAIKVP--EG---VDDKKVRRALLKEYGVEIAGGQGPLKGKIFRIGHMGNVRPEDVLAALAALEAAL 361 (383)
T ss_pred ccccCcccCCCceEEEECC--CC---CCcHHHHHHHHHhCCEEecccccccCccEEEEecCccCCHHHHHHHHHHHHHHH
Confidence 1111111111 22333322 11 011112223344558887753 3589998555567777777777766554
Q ss_pred c
Q psy8199 646 N 646 (965)
Q Consensus 646 ~ 646 (965)
.
T Consensus 362 ~ 362 (383)
T COG0075 362 R 362 (383)
T ss_pred H
Confidence 3
|
|
| >PRK14460 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.6e-10 Score=123.62 Aligned_cols=188 Identities=16% Similarity=0.231 Sum_probs=141.8
Q ss_pred cCCCCCCCCCCCCCCcCCCCcccccCCCHHHHHHHHHHH---H-HC--C---CCEEEEeeccCCCCcccHHHHHHHHHHH
Q psy8199 689 TGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKA---K-SD--G---ATRFCMGAAWRELKDRDLDNIENMICEV 759 (965)
Q Consensus 689 s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~---~-~~--g---~~~i~l~~g~~~~~~~~~~~~~~~~~~i 759 (965)
..+|+.+|.||..... + ..+.++++||++++... . +. | ++.|.+.|+++|+.. ++.+.+.++.+
T Consensus 109 q~GC~~~C~FC~tg~~---g--~~rnlt~~EI~~qv~~~~~~~~~~g~g~~~i~nIvfmGmGEPLln--~~~v~~~l~~l 181 (354)
T PRK14460 109 QVGCAMGCTFCSTGTM---G--FERNMTMGEILGQVLVAREHLGDNGPDHPILRNLVFMGMGEPLLN--LDEVMRSLRTL 181 (354)
T ss_pred CCCcCCCCccCCCCCC---C--CCcCCCHHHHHHHHHHHHHHHhhccCCCcceeEEEEecCCcccCC--HHHHHHHHHHH
Confidence 6899999999974432 1 13358999999998433 2 22 2 678889887778654 78889999988
Q ss_pred Hh-cCc-----EeEE-ecCCCCHHHHHHHHHhCCCeEeccCCC-CHHHHhcccCC---CCHHHHHHHHHH-HHHcCCce-
Q psy8199 760 KK-IGL-----ETCL-TLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIIST---RDYENRLNTLKN-VRNVGINI- 826 (965)
Q Consensus 760 ~~-~~~-----~i~~-~~~~~~~e~l~~Lk~aG~~~i~i~~es-~~~~~~~i~~~---~~~~~~~~~i~~-~~~~Gi~v- 826 (965)
++ .++ .+++ +.|. .+.++.|.++|+..+.+++++ +++.++++.+. .+.++.+++++. ..+.|-++
T Consensus 182 ~~~~Gl~~~~r~itvsT~G~--~~~i~~L~~~~l~~L~iSLha~~~e~r~~i~p~~~~~~l~~ll~al~~~~~~~~~~v~ 259 (354)
T PRK14460 182 NNEKGLNFSPRRITVSTCGI--EKGLRELGESGLAFLAVSLHAPNQELRERIMPKAARWPLDDLIAALKSYPLKTRERVT 259 (354)
T ss_pred hhhhccCCCCCeEEEECCCC--hHHHHHHHhCCCcEEEEeCCCCCHHHHHHhcCccccCCHHHHHHHHHHHHHhcCCeEE
Confidence 75 354 3444 3454 678999999999999999999 99999999874 478888888875 34455444
Q ss_pred -eeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCCCCCCCHHHHHHHHHHHHH
Q psy8199 827 -CCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARI 891 (965)
Q Consensus 827 -~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~~~~~~~~~~~~~ia~~R~ 891 (965)
..-+|-|.+++.+|+.+.+++++.++ ..|.+-+|.|.+|.++ ++++.+++.+...+++.
T Consensus 260 iey~LI~GvNDs~ed~~~l~~~l~~~~---~~VnLIpyn~~~g~~y---~~p~~e~v~~f~~~l~~ 319 (354)
T PRK14460 260 FEYLLLGGVNDSLEHARELVRLLSRTK---CKLNLIVYNPAEGLPY---SAPTEERILAFEKYLWS 319 (354)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhcCC---CcEEEEcCCCCCCCCC---CCCCHHHHHHHHHHHHH
Confidence 45666677899999999999999986 4688888888888875 46688887777666654
|
|
| >PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.8e-10 Score=122.76 Aligned_cols=189 Identities=12% Similarity=0.145 Sum_probs=137.5
Q ss_pred cCCCCCCCCCCCCCCcCCCCcccccCCCHHHHHHHHHHH--------HHCCCCEEEEeeccCCCCcccHHHHHHHHHHHH
Q psy8199 689 TGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKA--------KSDGATRFCMGAAWRELKDRDLDNIENMICEVK 760 (965)
Q Consensus 689 s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~--------~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~ 760 (965)
..+|+.+|.||..... + ..+.++.+||++++..+ ...+++.|.+.|-++|+.. .+.+.++++.++
T Consensus 128 q~GCnl~C~FC~tg~~---g--~~rnLt~~EI~~qv~~~~~~~~~~~~~~~v~nIvfmGmGEPLln--~d~v~~~i~~l~ 200 (368)
T PRK14456 128 QAGCALRCSFCATGQM---G--FRRNLTAGEITGQVFALSDMLAERNRERGITNIVFMGMGEPLLN--TDNVFEAVLTLS 200 (368)
T ss_pred cCCCCCCCCCCCCCCC---C--CCCCCCHHHHHHHHHHHHHHHHhhhccCCccEEEEeCcCccccC--HHHHHHHHHHHh
Confidence 7899999999975432 1 12348999999987443 2357899999995567555 456777777776
Q ss_pred hc----Cc---EeEEecCCCCHHHHHHHHHhCCC-eEeccCCC-CHHHHhcccC----CCCHHHHHHHHH-HHHHcCCce
Q psy8199 761 KI----GL---ETCLTLGMLNENQAYRLKKVGLD-YYNHNLDT-SPKLYGDIIS----TRDYENRLNTLK-NVRNVGINI 826 (965)
Q Consensus 761 ~~----~~---~i~~~~~~~~~e~l~~Lk~aG~~-~i~i~~es-~~~~~~~i~~----~~~~~~~~~~i~-~~~~~Gi~v 826 (965)
+. ++ .++++.-.+.+ .+++|.++|++ .+.+++++ +++.++++.+ ..+.++.+++++ .+.+.|.++
T Consensus 201 ~~~~~~~is~r~ItisT~Gl~~-~i~~L~~~gl~~~LaiSL~a~~~e~r~~i~P~~~~~~~l~~l~~~i~~~~~~~g~~V 279 (368)
T PRK14456 201 TRKYRFSISQRKITISTVGITP-EIDRLATSGLKTKLAVSLHSADQEKRERLMPQAARDYPLDELREALIGYASKTGEPV 279 (368)
T ss_pred ccccccCcCcCeeEEECCCChH-HHHHHHHcCCCceEEEEecCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 53 12 33343222444 57999999996 89999999 9999999963 558899999998 477788665
Q ss_pred e--eeEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCCCCCCCHHHHHHHHHHHHH
Q psy8199 827 C--CGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARI 891 (965)
Q Consensus 827 ~--~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~~~~~~~~~~~~~ia~~R~ 891 (965)
. .-+|-|..++.+|+.+++++++.+. ..|.+-+|.|.++.++ .+++.+.+.+...+++.
T Consensus 280 ~ieyvLI~GvNDs~eda~~L~~~l~~~~---~~VnlIpyn~~~~~~~---~~ps~e~i~~F~~~L~~ 340 (368)
T PRK14456 280 TLVYMLLEGINDSPEDARKLIRFASRFF---CKINLIDYNSIVNIKF---EPVCSSTRERFRDRLLD 340 (368)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHHHhcCC---CeeEEeeeccCCCCCC---CCCCHHHHHHHHHHHHH
Confidence 4 5566677899999999999999985 4566667777777665 35677777776666654
|
|
| >PRK07671 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.7e-10 Score=127.79 Aligned_cols=240 Identities=15% Similarity=0.121 Sum_probs=148.1
Q ss_pred cCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCc
Q psy8199 291 LSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQ 370 (965)
Q Consensus 291 ~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~ 370 (965)
+..+.++...+|+++++++.+ .+..++++||+.|+..++.++ .++++||+.++.|.+........
T Consensus 44 y~r~~~p~~~~Le~~lA~l~g--~~~~~~~~sG~aai~~~~~~l---------~~Gd~Viv~~~~y~~~~~~~~~~---- 108 (377)
T PRK07671 44 YSRTGNPTRAALEELIAVLEG--GHAGFAFGSGMAAITAVMMLF---------SSGDHVILTDDVYGGTYRVMTKV---- 108 (377)
T ss_pred cCCCCChHHHHHHHHHHHHhC--CCceEEeCCHHHHHHHHHHHh---------CCCCEEEECCCccchHHHHHHHH----
Confidence 346678888999999999985 456677888998887665432 35688999999886542110000
Q ss_pred CccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHH
Q psy8199 371 SFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVRE 450 (965)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~ 450 (965)
.......+.+++. .|++++++++. +++.+|++|. ++|++|.+.+ +++|.+
T Consensus 109 -----~~~~G~~v~~v~~-----------------~d~~~l~~ai~---~~tklV~le~-P~NPtg~~~d----l~~I~~ 158 (377)
T PRK07671 109 -----LNRFGIEHTFVDT-----------------SNLEEVEEAIR---PNTKAIYVET-PTNPLLKITD----IKKIST 158 (377)
T ss_pred -----HhcCCeEEEEECC-----------------CCHHHHHHhcC---CCCeEEEEEC-CCCCCCcccC----HHHHHH
Confidence 0001112333332 26788888875 3567888887 7899998776 999999
Q ss_pred HHHhcCCeEEEeccccCCCcccccccccccCCCcceee--eccccCCCc-ccceeeee-cHHHHHhhhccCCcccccccC
Q psy8199 451 ICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLC--LSKGITGGY-LPLSLVMT-TDKIYNSIYYKNNINIFLHSH 526 (965)
Q Consensus 451 l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt--~sK~l~gG~-~pig~v~~-~~~i~~~~~~~~~~~~~~~~~ 526 (965)
+|+++|+++|+||++... ..+.. .....|+++ ++|.++|.. .-.|++++ ++++++.+.. +....
T Consensus 159 la~~~g~~lvvD~a~~~~-~~~~p-----~~~g~Divv~S~sK~l~G~~~~~~G~~v~~~~~l~~~~~~------~~~~~ 226 (377)
T PRK07671 159 IAKEKGLLTIVDNTFMTP-YWQSP-----ISLGADIVLHSATKYLGGHSDVVAGLVVVNSPELAEDLHF------VQNST 226 (377)
T ss_pred HHHHcCCEEEEECCCCcc-ccCCh-----hhhCCeEEEecCcccccCCccceeEEEEeCcHHHHHHHHH------HHHhh
Confidence 999999999999998531 12221 223457774 679887621 12344555 5567665543 11111
Q ss_pred CCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHccc-----CCCcee----------eeeceeEEEEEEEe
Q psy8199 527 SYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLI-----THPKII----------NFRQKGMIWAFDVI 589 (965)
Q Consensus 527 t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~-----~~~~i~----------~v~g~G~~~~i~~~ 589 (965)
.-..+|..+..++..++.+.. ..++..++..++.+.|++.. .+|++. ...|-|.++.|++.
T Consensus 227 g~~~~~~~a~l~~~~l~tl~~--R~~~~~~na~~la~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~s~~~~ 302 (377)
T PRK07671 227 GGILGPQDSWLLLRGLKTLGI--RMEEHETNSRAIAEFLNNHPAVNKVYYPGLPSHPNHELAKEQANGFGGMISFDVG 302 (377)
T ss_pred cCCCCHHHHHHHHcCcChHHH--HHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEeC
Confidence 223456666666665554432 35555667777777776432 233322 12466889999883
|
|
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.6e-09 Score=128.23 Aligned_cols=312 Identities=12% Similarity=0.137 Sum_probs=193.5
Q ss_pred HHHHHHHHHHHhhcCCCCC-eEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccch
Q psy8199 297 KPVIKLSEKLSSLTQYKLG-HCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEI 375 (965)
Q Consensus 297 ~~~~~la~~l~~~~~~~~~-~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~ 375 (965)
+...++.+.|+++++ .+ -.++.++|+.|..+++.++|.|+..+|+.+|++|+ ...+-||+...+....|
T Consensus 530 q~i~elq~~l~eltG--md~~Sl~p~aGA~gE~agL~aiR~y~~~rge~~R~~vl-ip~saHgtnPasa~~~G------- 599 (939)
T TIGR00461 530 ELIAQLEKWLCSITG--FDAISLQPNSGAQGEYAGLRVIRSYHESRGENHRNICL-IPVSAHGTNPASAAMAG------- 599 (939)
T ss_pred HHHHHHHHHHHHHHC--CCCcccCCchHHHHHHHHHHHHHHHHHhcCCCCCCEEE-EEccccCcCHHHHHHCC-------
Confidence 556789999999995 44 44567888888888999999999888886665554 45578888544432222
Q ss_pred hcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhc
Q psy8199 376 YTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNY 455 (965)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~ 455 (965)
..++.+|... .+. .|+++|+++++++.+++++|++.- +++ .|.+.++ +++|.++|+++
T Consensus 600 -----~~Vv~V~~d~-~G~-----------iDle~L~~~i~~~~~~taaV~iT~-pst-~G~~e~~---I~eI~~iah~~ 657 (939)
T TIGR00461 600 -----MQVVPVNCDQ-DGN-----------IDLVDLKNKAEQHGDELAAVMVTY-PST-HGVFEPT---IQHACDIVHSF 657 (939)
T ss_pred -----CEEEEeccCC-CCC-----------cCHHHHHHHHhhcCCceEEEEEEe-CCc-Cceeccc---HHHHHHHHHHc
Confidence 1344555421 111 488999999986556788888765 344 5665443 89999999999
Q ss_pred CCeEEEeccccC-CCcccccccccccCCCcceeeec--cccC----CCcccceeeeecHHHHHhhhccC--C-------c
Q psy8199 456 NIHLIADEIAVG-CGRTGKFFACEHAEIWPDFLCLS--KGIT----GGYLPLSLVMTTDKIYNSIYYKN--N-------I 519 (965)
Q Consensus 456 g~llI~DEv~tg-~gr~G~~~~~~~~~~~pDivt~s--K~l~----gG~~pig~v~~~~~i~~~~~~~~--~-------~ 519 (965)
|.++++|-++.. .+ + ...--....|+++++ |.++ +|+-.+|.+.+++++...+..+. . .
T Consensus 658 G~~v~VDgAq~~al~--~---l~~Pg~~GaDi~~~s~HKtf~~P~G~GGPg~G~i~vr~~L~~~lPg~~v~~t~d~~gre 732 (939)
T TIGR00461 658 GGQVYLDGANMNAQV--G---LTSPGDLGADVCHLNLHKTFCIPHGGGGPGMGPIGVKSHLIPFLPKHDVVSMITGIGGS 732 (939)
T ss_pred CCEEEEEecChhhCC--C---CCCccccCCCEEEecCCccCCCCCCCCCCCeEEEEEhhhchhhcCCCcccccccCCCCc
Confidence 999999999853 21 1 111113457999885 8665 23346788888887655443210 0 0
Q ss_pred cc-ccccCCCCCCHHHHHHHHHHHHHHhcccH---HHHHHHHHHHHHHHHHcccCCCceeeeec-eeEE---EEEEEeec
Q psy8199 520 NI-FLHSHSYSGNPLACCAALATLEIFNKDNI---LQRISQDMKKITKALTSLITHPKIINFRQ-KGMI---WAFDVIIE 591 (965)
Q Consensus 520 ~~-~~~~~t~~~~~~~~aaa~a~L~~~~~~~~---~~~~~~~~~~l~~~L~~l~~~~~i~~v~g-~G~~---~~i~~~~~ 591 (965)
.. ...++...++.+.+..+...|..+-.+++ .+..-.+..|+.++|.+. .+.+ ..+ .|.+ +.+++. .
T Consensus 733 q~Iga~s~~~~g~a~~~l~a~~yi~~lG~~GL~~~a~~ailnAnYl~~rL~~~--~~~l--~~~~~~~~~hEfv~~~~-~ 807 (939)
T TIGR00461 733 KSIGSVSAAPYGSASILPISWMYIKMMGNEGLPKASVVAILNANYMATRLKDH--YPIL--FVGTLKHVAHECILDLR-P 807 (939)
T ss_pred cccccccccccCcHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcc--Cccc--ccCCCCceeEEEEEecc-c
Confidence 00 01112234555555556666666665544 344445778888888753 1111 111 1221 222221 0
Q ss_pred CccchhhHHHHHHHHHHHcCcEEe----ecCCEEEEeCCcccCHHHHHHHHHhhhcccccHHH
Q psy8199 592 DPEQIETFSKKFFVAALKNELLLR----PIGNTVYLMPPYILNKNEIQHMTSAIFQTFNELDE 650 (965)
Q Consensus 592 ~~~~~~~~~~~~~~~l~~~Gi~~~----~~~~~lR~~p~~~~t~~~i~~~~~~l~~~~~~~~e 650 (965)
...........+.++|.+.|+... |..+.+.+.|.-..+.++||++++++.....+.++
T Consensus 808 ~~~~~g~~~~dIakrL~d~G~hapt~~~pv~g~lmiepTE~eskeelD~f~~al~~I~~e~~~ 870 (939)
T TIGR00461 808 LKAKTGIEAIDVAKRLQDYGFHAPTLSFPVPGTLMVEPTESESLEELDRFCDAMIAIKEEINA 870 (939)
T ss_pred hhhhcCCCHHHHHHHHHhCCeeccccCCccCCeEEEEeeccCCHHHHHHHHHHHHHHHHHHHH
Confidence 000111234578899999999753 22357888888999999999999998766554443
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes | Back alignment and domain information |
|---|
Probab=99.27 E-value=8.1e-11 Score=116.95 Aligned_cols=166 Identities=24% Similarity=0.250 Sum_probs=112.6
Q ss_pred HHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhccc
Q psy8199 300 IKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSL 379 (965)
Q Consensus 300 ~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~ 379 (965)
.++.+++++.++.+.+.+.+++||++|++.+++.++. .+++|++.++.||+.........+
T Consensus 3 ~~~~~~l~~~~~~~~~~~~~~~~~t~a~~~~~~~~~~--------~~~~v~~~~~~~~~~~~~~~~~~g----------- 63 (170)
T cd01494 3 EELEEKLARLLQPGNDKAVFVPSGTGANEAALLALLG--------PGDEVIVDANGHGSRYWVAAELAG----------- 63 (170)
T ss_pred HHHHHHHHHHcCCCCCcEEEeCCcHHHHHHHHHHhCC--------CCCEEEEeecccceehhhHHHhcC-----------
Confidence 4677888888855677899999999999999998743 367899999999887421111111
Q ss_pred CCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeE
Q psy8199 380 LNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHL 459 (965)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~ll 459 (965)
.....++.+...... .+.+.+++... ..+++++++++ +++++|...+ +++|.++|+++|+++
T Consensus 64 -~~~~~v~~~~~~~~~----------~~~~~~~~~~~--~~~~~~v~~~~-~~~~~g~~~~----~~~l~~~~~~~~~~l 125 (170)
T cd01494 64 -AKPVPVPVDDAGYGG----------LDVAILEELKA--KPNVALIVITP-NTTSGGVLVP----LKEIRKIAKEYGILL 125 (170)
T ss_pred -CEEEEeccCCCCccc----------hhhhhhhhccc--cCceEEEEEec-CcCCCCeEcC----HHHHHHHHHHcCCEE
Confidence 123333332111100 12223433222 46789999998 8888888776 589999999999999
Q ss_pred EEeccccCCCcccccccccccCCCcceeeec--cccCCCcccceeeeec
Q psy8199 460 IADEIAVGCGRTGKFFACEHAEIWPDFLCLS--KGITGGYLPLSLVMTT 506 (965)
Q Consensus 460 I~DEv~tg~gr~G~~~~~~~~~~~pDivt~s--K~l~gG~~pig~v~~~ 506 (965)
|+|+++.++...... .......+|+++.| |.+++ .++|+++++
T Consensus 126 i~D~a~~~~~~~~~~--~~~~~~~~d~~~~s~~K~~~~--~~~G~l~~~ 170 (170)
T cd01494 126 LVDAASAGGASPAPG--VLIPEGGADVVTFSLHKNLGG--EGGGVVIVK 170 (170)
T ss_pred EEecccccccccccc--cccccccCCEEEEEcccccCC--CceEEEEeC
Confidence 999999876543222 12223458999877 99977 478887754
|
PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis |
| >PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.27 E-value=4e-10 Score=127.81 Aligned_cols=242 Identities=12% Similarity=0.112 Sum_probs=148.0
Q ss_pred CCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcC
Q psy8199 292 SNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQS 371 (965)
Q Consensus 292 ~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~ 371 (965)
.+..++....|+++++++.+ .+.+++++||+.|+..++.... .++++||+....|.+. ...+..
T Consensus 64 sr~~~p~~~~Le~~lA~l~g--~~~av~~sSG~aAi~~al~all--------~~Gd~Vv~~~~~y~~t-~~~~~~----- 127 (436)
T PRK07812 64 TRIMNPTQDVVEQRIAALEG--GVAALLLASGQAAETFAILNLA--------GAGDHIVSSPRLYGGT-YNLFHY----- 127 (436)
T ss_pred cCCCCchHHHHHHHHHHHhC--CCeEEEEccHHHHHHHHHHHHh--------CCCCEEEEeCCcchHH-HHHHHH-----
Confidence 34557778899999999984 5678999999999999997553 2567888887776443 111000
Q ss_pred ccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHH
Q psy8199 372 FKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREI 451 (965)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l 451 (965)
........+.+++.+ .|+++++++++ +++.+|++|. +.|+.|.+.+ +++|.++
T Consensus 128 ---~l~~~Gi~v~~vdd~----------------~d~e~l~~ai~---~~tklV~ie~-~sNp~G~v~D----l~~I~~l 180 (436)
T PRK07812 128 ---TLPKLGIEVSFVEDP----------------DDLDAWRAAVR---PNTKAFFAET-ISNPQIDVLD----IPGVAEV 180 (436)
T ss_pred ---HhhcCeEEEEEECCC----------------CCHHHHHHhCC---CCCeEEEEEC-CCCCCCeecC----HHHHHHH
Confidence 000011123333211 26778887774 4578899998 8999999988 9999999
Q ss_pred HHhcCCeEEEeccccCCCcccccccccccCCCcceee--eccccCCCcccceeeee-cHHH-------------------
Q psy8199 452 CNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLC--LSKGITGGYLPLSLVMT-TDKI------------------- 509 (965)
Q Consensus 452 ~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt--~sK~l~gG~~pig~v~~-~~~i------------------- 509 (965)
|++||+++|+|+++. .+.. ........|+++ ++|.++|..--+|.++. +..+
T Consensus 181 a~~~gi~liVD~t~a-~~~~-----~~pl~~GaDivv~S~tK~lgg~G~~i~G~vv~~~~~~~~~~~~~~~~~~~~~~~~ 254 (436)
T PRK07812 181 AHEAGVPLIVDNTIA-TPYL-----IRPLEHGADIVVHSATKYLGGHGTAIAGVIVDGGTFDWTQGRFPGFTTPDPSYHG 254 (436)
T ss_pred HHHcCCEEEEECCCc-cccc-----CCchhcCCCEEEEecccccCCCCCeEEEEEEcCCccccccccccccccCCccccc
Confidence 999999999999875 2211 111233478774 67988762123444443 2211
Q ss_pred -----------HHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHccc-----CCCc
Q psy8199 510 -----------YNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLI-----THPK 573 (965)
Q Consensus 510 -----------~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~-----~~~~ 573 (965)
+..... ..........+|..+...+..|+.+.. ..++-.++..++.+.|++.. .+|+
T Consensus 255 ~~~~~~~~~~~~~~~~~-----~~~~~~G~~l~p~~a~l~~rgl~tL~~--R~~~~~~nA~~la~~L~~~p~v~~V~yPg 327 (436)
T PRK07812 255 VVFAELGPPAYALKARV-----QLLRDLGSAISPFNAFLIAQGLETLSL--RIERHVANAQRVAEFLEARDEVASVNYAG 327 (436)
T ss_pred chhhhcchhHHHHHHHH-----HHHHhcCCCCCHHHHHHHhcCcCcHHH--HHHHHHHHHHHHHHHHHhCCCccEEECCC
Confidence 000000 001112234567776666666654432 35666677777888777542 2343
Q ss_pred eee----------e-eceeEEEEEEEe
Q psy8199 574 IIN----------F-RQKGMIWAFDVI 589 (965)
Q Consensus 574 i~~----------v-~g~G~~~~i~~~ 589 (965)
+.. . .|-|.+++|++.
T Consensus 328 l~s~p~~~~~~~~~~~g~gg~~sf~l~ 354 (436)
T PRK07812 328 LPSSPWYERAKRLAPKGTGAVLSFELA 354 (436)
T ss_pred CCCCccHHHHHHhCcCCCceEEEEEec
Confidence 221 1 467889999985
|
|
| >TIGR00474 selA seryl-tRNA(sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.2e-09 Score=119.54 Aligned_cols=328 Identities=14% Similarity=0.131 Sum_probs=185.4
Q ss_pred EEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhcccc--cc-CCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChh
Q psy8199 248 LITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHV--ML-SNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGA 324 (965)
Q Consensus 248 ~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~--~~-~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGs 324 (965)
++...|..|.+..+. +.-++++++|+.+.+...... .. .+........+++.++++++ .+.+++++||+
T Consensus 76 vinatg~v~~tNlg~------s~l~~~vieAv~~~~~~y~~l~~~l~~g~~g~r~~~le~~lA~l~g--ae~alvv~sg~ 147 (454)
T TIGR00474 76 VINATGVVLHTNLGR------APLAEEAIEAVTDAARGYSNLEYDLETGKRGSRYSHVEGLLCELTG--AEDALVVNNNA 147 (454)
T ss_pred eeCCCCcEEeccCCC------CCCCHHHHHHHHHHHhcccchhccccccccchHHHHHHHHHHHHhC--CCcEEEECCHH
Confidence 566667766665432 124799999999988764211 01 12233456788899999985 45677789999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCceEEEEEcCCcc--CCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhH
Q psy8199 325 SAVEVALKMSFHYWYNKGFLNKKKFICLQNSYH--GETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANE 402 (965)
Q Consensus 325 eA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yH--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (965)
.|+..++... .++++||+.++.+. |.+.... ............++..+ .
T Consensus 148 aAi~l~l~~l---------~~GdeVIvs~~e~v~~ggs~~i~---------~~~~~~G~~~~~v~~~~---~-------- 198 (454)
T TIGR00474 148 AAVLLALNTL---------AKGKEVIVSRGELVEIGGSFRIP---------DVMEQSGAKLVEVGTTN---R-------- 198 (454)
T ss_pred HHHHHHHHHh---------CCcCEEEECCChhhhhcchhhHH---------HHHHHcCCEEEEeCCCC---C--------
Confidence 9998888543 35678888876642 2111000 00011111223332211 0
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEEEccccccC--CC--cccCChHHHHHHHHHHHhcCCeEEEeccccCCCccccc----
Q psy8199 403 IARCAIFDLEILLKKNHNKIAAIIIEPLVQCA--GG--MIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKF---- 474 (965)
Q Consensus 403 ~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~--~G--~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~---- 474 (965)
.+++++++++. +++++|+++. ..|. .| .+.+ +++|.++|++||+++|+|-. +|-.+..
T Consensus 199 ---~~l~dle~aI~---~~T~lv~~~h-~sN~~~~G~~~~~d----l~~I~~la~~~g~~vivD~~---sG~l~~~~~~g 264 (454)
T TIGR00474 199 ---THLKDYEDAIT---ENTALLLKVH-TSNYRIVGFTEEVS----IAELVALGREHGLPVMEDLG---SGSLVDLSRYG 264 (454)
T ss_pred ---CCHHHHHHhcC---cCCEEEEEEc-cCcccccCCCCCCC----HHHHHHHHHHcCCeEEEECC---Ccccccchhcc
Confidence 25788888875 4567777766 4443 35 3555 99999999999999999953 3322221
Q ss_pred -----ccccccCCCcceeeec--cccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc
Q psy8199 475 -----FACEHAEIWPDFLCLS--KGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK 547 (965)
Q Consensus 475 -----~~~~~~~~~pDivt~s--K~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~ 547 (965)
...+......|+++|| |.++|. ..|++++++++++.+.... + .-.+...-+..++..++|....+
T Consensus 265 l~~~p~~~~~~~~GaDiv~fSg~K~LgGp--~~G~i~g~~~~i~~l~~~~----l--~r~lr~~k~~la~l~~~l~~~~~ 336 (454)
T TIGR00474 265 LPDEPTVQEVIAAGVDLVTFSGDKLLGGP--QAGIIVGKKELIERLKKNP----L--TRALRVDKLTLAALEATLRLYLD 336 (454)
T ss_pred CCCCcccccHhHcCCCEEEecCccccCCC--eEEEEEECHHHHHhhhhch----h--HHHHhhChHHHHHHHHHHHHHhC
Confidence 1112233458999999 988774 3678889998887665411 1 11112233344444455543221
Q ss_pred cc--H------------HHHHHHHHHHHHHHHHcccCCCce--eeeec-----eeEE-------EEEEEeecCccchhhH
Q psy8199 548 DN--I------------LQRISQDMKKITKALTSLITHPKI--INFRQ-----KGMI-------WAFDVIIEDPEQIETF 599 (965)
Q Consensus 548 ~~--~------------~~~~~~~~~~l~~~L~~l~~~~~i--~~v~g-----~G~~-------~~i~~~~~~~~~~~~~ 599 (965)
+. + .++..++..++.+.|++... +++ ..+.. -|.| +.+.+. .. .-.
T Consensus 337 ~~~a~~~~~~l~~l~~~~~~~~~~A~~la~~L~~~~~-~~~~~~~~~~~~~~ggg~~p~~~l~~~~v~~~-~~----~~~ 410 (454)
T TIGR00474 337 PEKALEKIPTLRMLTQSPEELRARAERLAKRLKAALG-PGFELEIVPGLSQVGGGSLPDERLPSYAVTLT-PD----GLS 410 (454)
T ss_pred chhhhhhchHHHHhccCHHHHHHHHHHHHHHHHhhcc-CCceEEEEEcCCcccCCCCcCCCCCeEEEEEe-cC----CCC
Confidence 11 1 23555667777777755311 111 11111 1221 233332 11 111
Q ss_pred HHHHHHHHHHcC--cEEeecCCEEEEeCCcccCHHHHHHHHHhh
Q psy8199 600 SKKFFVAALKNE--LLLRPIGNTVYLMPPYILNKNEIQHMTSAI 641 (965)
Q Consensus 600 ~~~~~~~l~~~G--i~~~~~~~~lR~~p~~~~t~~~i~~~~~~l 641 (965)
+..+.++|++.. |+.+...+.+.+-+ .++.+++++.+++++
T Consensus 411 ~~~l~~~lr~~~~~ii~r~~~~~~~ld~-r~~~~~~~~~~~~~~ 453 (454)
T TIGR00474 411 AEKLEARLRELPPPIIGRIEDDRFLLDL-RTLLEDEEELLIEAL 453 (454)
T ss_pred HHHHHHHHhcCCCCEEEEEECCEEEEEe-CcCCHHHHHHHHHHh
Confidence 346777777554 77776667787875 477788888877764
|
In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on. |
| >cd00615 Orn_deC_like Ornithine decarboxylase family | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.8e-11 Score=129.81 Aligned_cols=231 Identities=12% Similarity=0.096 Sum_probs=134.6
Q ss_pred CCCcHHHHHHHHHHHhhcCCCCCeEEE-cCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcC
Q psy8199 293 NLTHKPVIKLSEKLSSLTQYKLGHCFY-GSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQS 371 (965)
Q Consensus 293 ~~~~~~~~~la~~l~~~~~~~~~~v~~-~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~ 371 (965)
..+.....++.+.+++.++ .++++| ++|+++|+..++..+. .++++|++..++|... ..++...|.
T Consensus 55 ~~~~g~i~~~~~~~A~~~g--a~~~~~~~~Gst~a~~~~l~al~--------~~gd~Vlv~~~~h~s~-~~~~~~~g~-- 121 (294)
T cd00615 55 LDPTGPIKEAQELAARAFG--AKHTFFLVNGTSSSNKAVILAVC--------GPGDKILIDRNCHKSV-INGLVLSGA-- 121 (294)
T ss_pred CCCChHHHHHHHHHHHHhC--CCCEEEEcCcHHHHHHHHHHHcC--------CCCCEEEEeCCchHHH-HHHHHHCCC--
Confidence 3456667788888899885 455665 8888999999887663 2567788877665333 333333221
Q ss_pred ccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHH
Q psy8199 372 FKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREI 451 (965)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l 451 (965)
...+++.+..... +. ....|++++++++++.++..++++++| +.+|.+.+ +++|.++
T Consensus 122 ----------~~~~v~~~~~~~~--~~----~~~i~~~~l~~~l~~~~~~k~v~l~~p---~~~G~~~d----l~~I~~~ 178 (294)
T cd00615 122 ----------VPVYLKPERNPYY--GI----AGGIPPETFKKALIEHPDAKAAVITNP---TYYGICYN----LRKIVEE 178 (294)
T ss_pred ----------EEEEecCccCccc--Cc----CCCCCHHHHHHHHHhCCCceEEEEECC---CCCCEecC----HHHHHHH
Confidence 1222222110000 00 001367889988875433344555555 46788876 8999999
Q ss_pred HHhcCCeEEEeccccCCCcccccccccccCCCcceee--eccccCCCcccceeee-ecHHHH--HhhhccCCcccccccC
Q psy8199 452 CNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLC--LSKGITGGYLPLSLVM-TTDKIY--NSIYYKNNINIFLHSH 526 (965)
Q Consensus 452 ~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt--~sK~l~gG~~pig~v~-~~~~i~--~~~~~~~~~~~~~~~~ 526 (965)
|++||+++|+||+|......+..+.........|+++ ++|.++| ++.|+++ .+.+.. +.+.. .+....
T Consensus 179 ~~~~g~~livDeA~~~~~~~~~~~~~~~~~~~~div~~S~hK~l~g--~~~~~~l~~~~~~~~~~~~~~-----~~~~~~ 251 (294)
T cd00615 179 AHHRGLPVLVDEAHGAHFRFHPILPSSAAMAGADIVVQSTHKTLPA--LTQGSMIHVKGDLVNPDRVNE-----ALNLHQ 251 (294)
T ss_pred HHhcCCeEEEECcchhhhccCcccCcchhhcCCcEEEEchhcccch--HhHHHHHHhCCCcCCHHHHHH-----HHHHHC
Confidence 9999999999999864211111111112223467774 5798755 4554433 333321 11211 111123
Q ss_pred CCCCCHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHH
Q psy8199 527 SYSGNPLACCAALATLEIFNK--DNILQRISQDMKKITKALT 566 (965)
Q Consensus 527 t~~~~~~~~aaa~a~L~~~~~--~~~~~~~~~~~~~l~~~L~ 566 (965)
|.+.+.+.+++..++++.+.. +++.+++.++.+++++.|+
T Consensus 252 ttsps~~~~asl~~a~~~~~~~g~~~~~~~~~~~~~~r~~l~ 293 (294)
T cd00615 252 STSPSYLILASLDVARAMMALEGKELVEELIELALYARQEIN 293 (294)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 445566677777777776643 3467777777888877764
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life. |
| >PRK08114 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.4e-10 Score=125.06 Aligned_cols=241 Identities=13% Similarity=0.118 Sum_probs=158.0
Q ss_pred cCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCc
Q psy8199 291 LSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQ 370 (965)
Q Consensus 291 ~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~ 370 (965)
+++..++....|+++|+++- +.+.+++++||+.|+.+++.... .++++||+.+..|++......
T Consensus 56 YsR~~nPt~~~le~~la~LE--g~~~a~~~~SGmaAi~~~~~~ll--------~~GD~Vv~~~~~Yg~t~~l~~------ 119 (395)
T PRK08114 56 YGRRGTLTHFSLQEAMCELE--GGAGCALYPCGAAAVANAILAFV--------EQGDHVLMTGTAYEPTQDFCS------ 119 (395)
T ss_pred ccCCCChhHHHHHHHHHHHh--CCCeEEEEhHHHHHHHHHHHHHc--------CCCCEEEEeCCCcHHHHHHHH------
Confidence 45677888999999999987 45788889999999999887553 256788888877766522110
Q ss_pred CccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHH
Q psy8199 371 SFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVRE 450 (965)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~ 450 (965)
.........+.+++. .|.++++++++ +++.+|++|. +.|+.|.+.+ +++|.+
T Consensus 120 ---~~l~~~Gi~v~~vd~-----------------~d~~~l~~~l~---~~TrlV~~Et-psNp~~~v~D----I~~Ia~ 171 (395)
T PRK08114 120 ---KILSKLGVTTTWFDP-----------------LIGADIAKLIQ---PNTKVVFLES-PGSITMEVHD----VPAIVA 171 (395)
T ss_pred ---HHHHhcCcEEEEECC-----------------CCHHHHHHhcC---CCceEEEEEC-CCCCCCEeec----HHHHHH
Confidence 011111223344332 25677888885 4578999999 9999999998 999999
Q ss_pred HHHhcC--CeEEEeccccCCCcccccccccccCCCcceeee--ccccCCCc-ccceeeeecHHHHHhhhccCCccccccc
Q psy8199 451 ICNNYN--IHLIADEIAVGCGRTGKFFACEHAEIWPDFLCL--SKGITGGY-LPLSLVMTTDKIYNSIYYKNNINIFLHS 525 (965)
Q Consensus 451 l~~~~g--~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~--sK~l~gG~-~pig~v~~~~~i~~~~~~~~~~~~~~~~ 525 (965)
+|+++| +++|+|.+++. +. .++-.....|+++. .|.++|.. .-.|+++.++++++.+... . ...|
T Consensus 172 ia~~~g~g~~lvVDnT~a~----p~--~~~pl~~GaDivv~S~tKyl~Ghsdv~~G~v~~~~~~~~~l~~~---~-~~~G 241 (395)
T PRK08114 172 AVRSVNPDAVIMIDNTWAA----GV--LFKALDFGIDISIQAGTKYLVGHSDAMIGTAVANARCWEQLREN---S-YLMG 241 (395)
T ss_pred HHHHhCCCCEEEEECCCcc----cc--ccCHHHcCCcEEEEcCcccccCCCcceeEEEEcCHHHHHHHHHH---H-Hhcc
Confidence 999985 99999999852 21 24444556898875 58887731 3456666777766655420 0 1122
Q ss_pred CCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHccc-----CCCcee----------eeeceeEEEEEEEe
Q psy8199 526 HSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLI-----THPKII----------NFRQKGMIWAFDVI 589 (965)
Q Consensus 526 ~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~-----~~~~i~----------~v~g~G~~~~i~~~ 589 (965)
. ..+|..+...+..|+.+.- -.++-.++...+.+.|++.. .+|++. ...|-|.|+.|++.
T Consensus 242 ~--~~~p~~a~l~~rgl~TL~l--R~~~~~~na~~va~~L~~hp~V~~V~yPgl~~~p~~~~~~~~~~g~gg~~sf~l~ 316 (395)
T PRK08114 242 Q--MVDADTAYMTSRGLRTLGV--RLRQHEESSLKVAEWLAEHPEVARVNHPALPGCKGHEFWKRDFTGSSGLFSFVLK 316 (395)
T ss_pred C--CCCHHHHHHHHcCCCcHHH--HHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCccHHHHHhhCCCCceEEEEEec
Confidence 2 3467777766666654431 24555666667777776432 233322 12467889999985
|
|
| >PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.1e-09 Score=123.11 Aligned_cols=283 Identities=17% Similarity=0.147 Sum_probs=167.1
Q ss_pred HHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEE
Q psy8199 273 SYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICL 352 (965)
Q Consensus 273 p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~ 352 (965)
.+..+++.+.++.. +. ....+...++++++++.+ +..+++.++||+.|+.+|++++-- .++++||+.
T Consensus 5 ~e~~~~v~~~l~s~-~~---~~~g~~~~~fE~~~a~~~--g~~~~~~~~sgt~Al~~al~~l~~-------~~gdeVi~p 71 (363)
T PF01041_consen 5 EEEIDAVLEVLRSG-WL---STYGPYVEEFEKEFAEYF--GVKYAVAVSSGTSALHLALRALGL-------GPGDEVIVP 71 (363)
T ss_dssp HHHHHHHHHHHHHT-CC---SSSSHHHHHHHHHHHHHH--TSSEEEEESSHHHHHHHHHHHTTG-------GTTSEEEEE
T ss_pred HHHHHHHHHHHHhC-Cc---cCCCHHHHHHHHHHHHHh--CCCeEEEeCChhHHHHHHHHhcCC-------CcCceEecC
Confidence 45566777777664 21 122578899999999999 578999999999999999997522 467899999
Q ss_pred cCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccc
Q psy8199 353 QNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQ 432 (965)
Q Consensus 353 ~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~ 432 (965)
.-+|.+.......++. ..+++........ .|++++++++. +++.+|++-.
T Consensus 72 ~~t~~~~~~ai~~~G~-------------~pv~~Di~~~~~~-----------id~~~~~~~i~---~~t~ai~~~h--- 121 (363)
T PF01041_consen 72 AYTFPATASAILWAGA-------------EPVFVDIDPETLN-----------IDPEALEKAIT---PKTKAILVVH--- 121 (363)
T ss_dssp SSS-THHHHHHHHTT--------------EEEEE-BETTTSS-----------B-HHHHHHHHH---TTEEEEEEE----
T ss_pred CCcchHHHHHHHHhcc-------------EEEEEeccCCcCC-----------cCHHHHHHHhc---cCccEEEEec---
Confidence 8888776544444443 2233333212222 38899999996 3456666633
Q ss_pred cCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcceeeec----cccCCCcccceeeeec-H
Q psy8199 433 CAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS----KGITGGYLPLSLVMTT-D 507 (965)
Q Consensus 433 ~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~s----K~l~gG~~pig~v~~~-~ 507 (965)
.-|.... +.+|.++|+++|+.||-|-+|+ +|-. +.-...|-.-|+.+|| |.++.| --|+++.+ +
T Consensus 122 -~~G~~~d----~~~i~~~~~~~~i~lIeD~a~a-~g~~---~~g~~~G~~gd~~~fSf~~~K~i~~g--eGG~v~~~~~ 190 (363)
T PF01041_consen 122 -LFGNPAD----MDAIRAIARKHGIPLIEDAAQA-FGAR---YKGRPVGSFGDIAIFSFHPTKIITTG--EGGAVVTNDP 190 (363)
T ss_dssp -GGGB-------HHHHHHHHHHTT-EEEEE-TTT-TT-E---ETTEETTSSSSEEEEESSTTSSS-SS--S-EEEEESTH
T ss_pred -CCCCccc----HHHHHHHHHHcCCcEEEccccc-cCce---eCCEeccCCCCceEecCCCCCCCcCC--CCeeEEecHH
Confidence 3344443 9999999999999999999997 5421 1112223344888876 887654 23677775 4
Q ss_pred HHHHhhh---ccCCc----cccc----ccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcccCCCceee
Q psy8199 508 KIYNSIY---YKNNI----NIFL----HSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIIN 576 (965)
Q Consensus 508 ~i~~~~~---~~~~~----~~~~----~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~i~~ 576 (965)
++.+.+. ..+.. ..+. .+..+..+++.++.+++-|+.+. ...++-+++.+++.+.|..+ +++..
T Consensus 191 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~n~rm~~~~AAigl~QL~~L~--~~~~~R~~~a~~y~~~L~~~---~~~~~ 265 (363)
T PF01041_consen 191 ELAERARALRNHGRSRDAFRRYRHELPPGYNFRMSELQAAIGLAQLKRLD--EIIARRRENAQRYREALAGI---PGIKP 265 (363)
T ss_dssp HHHHHHHHHTBTTEETSECSTTEESSSS--B-B-BHHHHHHHHHHHHTHH--HHHHHHHHHHHHHHHHHTTG---TTEEE
T ss_pred HHHHHhhhhhccCcCccccccccccccCCcccccHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHhcC---CCccc
Confidence 4544443 21111 1111 23445677888888888887654 34566677788888888765 33211
Q ss_pred ---eece--eEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEee
Q psy8199 577 ---FRQK--GMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRP 616 (965)
Q Consensus 577 ---v~g~--G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~ 616 (965)
.... ...+.+.+...+... ...+.+.+.|.++||-..+
T Consensus 266 ~~~~~~~~~~~~~~f~i~~~~~~~--~~rd~l~~~L~~~GI~~~~ 308 (363)
T PF01041_consen 266 PPIPDGAERSSYYRFPIRLPDEAL--ADRDELVEALRARGIETRP 308 (363)
T ss_dssp EGCGTTTEEBCESSEEEEETCCGC--STHHHHHHHHHHTTBEEBC
T ss_pred cccccccccccccccccccccccc--chHHHHHHHHHHCCCcccc
Confidence 1111 233333332122110 1255788999999998765
|
The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A .... |
| >PRK05939 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=7.6e-10 Score=124.73 Aligned_cols=165 Identities=11% Similarity=0.121 Sum_probs=113.6
Q ss_pred cCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCc
Q psy8199 291 LSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQ 370 (965)
Q Consensus 291 ~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~ 370 (965)
+.+..++...+|+++++++.+ .+..+.++||+.|+..++....+ ++++||+.+..|.+.......
T Consensus 41 Y~r~g~p~~~~lE~~la~leg--~~~~v~~ssG~~Ai~~~l~all~--------~Gd~Vv~~~~~y~~t~~~~~~----- 105 (397)
T PRK05939 41 YARQGTPTTAALEAKITKMEG--GVGTVCFATGMAAIAAVFLTLLR--------AGDHLVSSQFLFGNTNSLFGT----- 105 (397)
T ss_pred cCCCCCHHHHHHHHHHHHHhC--CCeEEEeCCHHHHHHHHHHHHcC--------CCCEEEECCCccccHHHHHHH-----
Confidence 345567888999999999985 45677778899999999876532 567899888777554211000
Q ss_pred CccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHH
Q psy8199 371 SFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVRE 450 (965)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~ 450 (965)
.......+.+++. .|++++++++. +++.+|++|. ++|++|.+.+ +++|.+
T Consensus 106 -----l~~~G~~v~~v~~-----------------~d~e~l~~~l~---~~tklV~ves-p~NptG~v~d----l~~I~~ 155 (397)
T PRK05939 106 -----LRGLGVEVTMVDA-----------------TDVQNVAAAIR---PNTRMVFVET-IANPGTQVAD----LAGIGA 155 (397)
T ss_pred -----HHhcCCEEEEECC-----------------CCHHHHHHhCC---CCCeEEEEEC-CCCCCCCHHh----HHHHHH
Confidence 0011123344433 25788888874 4577888888 8999998866 999999
Q ss_pred HHHhcCCeEEEeccccCCCcccccccccccCCCccee--eeccccCCCcccceeeeec
Q psy8199 451 ICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL--CLSKGITGGYLPLSLVMTT 506 (965)
Q Consensus 451 l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDiv--t~sK~l~gG~~pig~v~~~ 506 (965)
+|+++|+++|+|++|.... .++-.....|++ +++|.++|....+|+++..
T Consensus 156 la~~~gi~livD~t~a~~~------~~~~~~~gaDivv~S~sK~~~g~g~~igg~v~~ 207 (397)
T PRK05939 156 LCRERGLLYVVDNTMTSPW------LFRPKDVGASLVINSLSKYIAGHGNALGGAVTD 207 (397)
T ss_pred HHHHcCCEEEEECCccccc------ccCccccCCEEEEecCeecccCCCCeEEEEEec
Confidence 9999999999999985211 122222346776 5789998733677776663
|
|
| >PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=1e-09 Score=120.44 Aligned_cols=188 Identities=11% Similarity=0.200 Sum_probs=137.6
Q ss_pred cCCCCCCCCCCCCCCcCCCCcccccCCCHHHHHHHHHHHHH------CCCCEEEEeeccCCCCcccHHHHHHHHHHHHh-
Q psy8199 689 TGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKS------DGATRFCMGAAWRELKDRDLDNIENMICEVKK- 761 (965)
Q Consensus 689 s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~------~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~- 761 (965)
..||+.+|.||...... ..+.++++||++++..... .|+..|.+.|++.|+.. .+.+.++++.+++
T Consensus 116 qvGC~~~C~FC~t~~~~-----~~r~lt~~EIv~qv~~~~~~~~~~g~~v~~Vv~~GmGEPLln--~~~v~~~l~~l~~~ 188 (356)
T PRK14455 116 QVGCRIGCTFCASTLGG-----LKRDLEAGEIVAQVMLVQKYLDETEERVSHIVVMGIGEPFDN--YDNVMDFLRIINDD 188 (356)
T ss_pred CCCCCCCCCcCCCCCCC-----CCccCCHHHHHHHHHHHHHHHhhcCCCcceEEEeccccccCC--HHHHHHHHHHHhcc
Confidence 68999999999865421 2446899999998875322 35788899897778554 6889999999986
Q ss_pred cCc-----EeEEe-cCCCCHHHHHHHHHhCCC-eEeccCCC-CHHHHhcccC---CCCHHHHHHHHHHHHH-cCCcee--
Q psy8199 762 IGL-----ETCLT-LGMLNENQAYRLKKVGLD-YYNHNLDT-SPKLYGDIIS---TRDYENRLNTLKNVRN-VGINIC-- 827 (965)
Q Consensus 762 ~~~-----~i~~~-~~~~~~e~l~~Lk~aG~~-~i~i~~es-~~~~~~~i~~---~~~~~~~~~~i~~~~~-~Gi~v~-- 827 (965)
.++ +++++ .|.. + .+..|.+.++. .+.+++.+ +++.++++.+ ..+.++.+++++.+.+ .+.++.
T Consensus 189 ~g~~~s~r~itvsT~G~~-~-~i~~l~d~~l~~~LaiSL~a~~~e~r~~l~pi~~~~~l~~Il~~l~~~~~~~~~~v~ie 266 (356)
T PRK14455 189 KGLAIGARHITVSTSGIA-P-KIYDFADEGLQINLAISLHAPNNELRSSLMPINRAYPLEKLMEAIEYYIEKTNRRVTFE 266 (356)
T ss_pred cCcccCCCceEEEecCch-H-hHHHHHhcccCeeEEeccCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 465 44453 3443 3 45566676643 35689999 9999997654 5678999999997765 555555
Q ss_pred eeEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCCCCCCCHHHHHHHHHHHHH
Q psy8199 828 CGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARI 891 (965)
Q Consensus 828 ~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~~~~~~~~~~~~~ia~~R~ 891 (965)
.-+|=|.+++.+++.+.+++++.++ ..|.+.+|.|.++.++ .+++.+++.+...+++.
T Consensus 267 y~lI~gvNDs~ed~~~La~ll~~l~---~~VnLIPynp~~~~ky---~~ps~e~l~~f~~~L~~ 324 (356)
T PRK14455 267 YILLGGVNDQVEHAEELADLLKGIK---CHVNLIPVNPVPERDY---VRTPKEDIFAFEDTLKK 324 (356)
T ss_pred EEEeCCCCCCHHHHHHHHHHHhcCC---CcEEEEecCcCCCCCC---cCCCHHHHHHHHHHHHH
Confidence 4555567899999999999999986 5688888888877654 34577777777666654
|
|
| >PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.23 E-value=6.6e-10 Score=126.27 Aligned_cols=246 Identities=15% Similarity=0.175 Sum_probs=149.1
Q ss_pred CCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcC
Q psy8199 292 SNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQS 371 (965)
Q Consensus 292 ~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~ 371 (965)
++..++...+++++++++.+ .+.+++++||++|+..++.... .++++||+.+..|++.......
T Consensus 59 ~R~~~p~~~~le~~lA~l~g--~~~av~~sSGt~Al~~al~~ll--------~~Gd~Vi~~~~~y~~t~~~~~~------ 122 (433)
T PRK08134 59 SRISNPTVAVLEERVAALEG--GVGAIATASGQAALHLAIATLM--------GAGSHIVASSALYGGSHNLLHY------ 122 (433)
T ss_pred ecCcChHHHHHHHHHHHHhC--CCcEEEeCCHHHHHHHHHHHHh--------CCCCEEEEeCCccHHHHHHHHH------
Confidence 45567788999999999985 3468999999999999988653 2567899988888764211100
Q ss_pred ccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHH
Q psy8199 372 FKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREI 451 (965)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l 451 (965)
........+.+++. .|+++++++|. +++.+|++|. +.|++|.+.+ +++|.++
T Consensus 123 ---~l~~~Gi~v~~vd~-----------------~d~~~l~~~i~---~~TklV~~e~-~~np~g~v~D----i~~I~~l 174 (433)
T PRK08134 123 ---TLRRFGIETTFVKP-----------------GDIDGWRAAIR---PNTRLLFGET-LGNPGLEVLD----IPTVAAI 174 (433)
T ss_pred ---HHhhCCeEEEEECC-----------------CCHHHHHHhcC---CCCeEEEEEC-CCcccCcccC----HHHHHHH
Confidence 00011123344432 26788888885 4578889998 7899999888 9999999
Q ss_pred HHhcCCeEEEeccccCCCcccccccccccCCCcceeeec--cccCCCcccceeeeec-HHH-------HHhhhccC-Cc-
Q psy8199 452 CNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS--KGITGGYLPLSLVMTT-DKI-------YNSIYYKN-NI- 519 (965)
Q Consensus 452 ~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~s--K~l~gG~~pig~v~~~-~~i-------~~~~~~~~-~~- 519 (965)
|++||+++|+|.+|. .+.. ..-.....|++++| |.++|-.--+|.++.. ... ...+...- ..
T Consensus 175 a~~~gi~livD~t~a-~~~~-----~~pl~~GaD~vv~S~tK~l~g~g~~~gG~v~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (433)
T PRK08134 175 AHEAGVPLLVDSTFT-TPYL-----LRPFEHGADLVYHSATKFLGGHGTAIGGVLVDGGRFDWEASGKFPELTEPYAGFH 248 (433)
T ss_pred HHHcCCEEEEECCCc-cccc-----CCchhcCCCEEEeccccccCCCCCceEEEEEecCccccccccccccccCCccccc
Confidence 999999999999985 2211 11123457888765 7676521234444331 110 00000000 00
Q ss_pred ----------cc--------ccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHccc-----CCCceee
Q psy8199 520 ----------NI--------FLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLI-----THPKIIN 576 (965)
Q Consensus 520 ----------~~--------~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~-----~~~~i~~ 576 (965)
.. .........+|..++..+..|+.+. ...++-.++..++.+.|++.. .+|++..
T Consensus 249 g~~~~~~~~~~~~~~~~~~~~~~~~G~~ls~~~A~l~~~gL~tl~--~R~~~~~~nA~~la~~L~~~p~V~~V~yP~l~~ 326 (433)
T PRK08134 249 GMVFAEESTVAAFLLRARREGLRDFGACLSPMNAWQLLQGIETLP--LRMERHVANTRKVVAFLASHPAVARVAHPELES 326 (433)
T ss_pred ccchhhccchhHHHHHHHHHHHHhcCCCCCHHHHHHHhcCCCcHH--HHHHHHHHHHHHHHHHHHhCCCccEEECCCCCC
Confidence 00 0011112346666666666665443 235566667777777776542 2344321
Q ss_pred ----------e-eceeEEEEEEEe
Q psy8199 577 ----------F-RQKGMIWAFDVI 589 (965)
Q Consensus 577 ----------v-~g~G~~~~i~~~ 589 (965)
. .|-|.|+.|++.
T Consensus 327 ~p~~~~~~~~~~~g~gg~~s~~l~ 350 (433)
T PRK08134 327 HPDHALAKRLLPRGAGSVFSFDLK 350 (433)
T ss_pred CccHHHHHHhCCCCCceEEEEEec
Confidence 1 467889999985
|
|
| >PLN02724 Molybdenum cofactor sulfurase | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.8e-09 Score=129.90 Aligned_cols=352 Identities=14% Similarity=0.115 Sum_probs=195.9
Q ss_pred cccccccccchhccCCCCCHHHHHH-HHHHHhhc-ccccc----CCCCcHHHHHHHHHHHhhcCCCCC--eEEEcCChhH
Q psy8199 254 KRYLDAISSWWVNLFGHSNSYINKA-LKNQLNKL-EHVML----SNLTHKPVIKLSEKLSSLTQYKLG--HCFYGSDGAS 325 (965)
Q Consensus 254 ~~ylD~~~~~~~~~lGh~~p~v~~a-v~~~~~~~-~~~~~----~~~~~~~~~~la~~l~~~~~~~~~--~v~~~~sGse 325 (965)
..|||..++.. -.|..+++ +.+.+... ...+. +....+..++..++++++++...+ .|+||+|+|+
T Consensus 35 ~iYLD~Aatt~------~~~~~V~~~~~~~~~~~~~np~s~~~~s~~~~~~~e~aR~~ia~~lga~~~~~~VvFtsnaT~ 108 (805)
T PLN02724 35 VVYLDHAGATL------YSESQLEAALADFSSNVYGNPHSQSDSSMRSSDTIESARQQVLEYFNAPPSDYACVFTSGATA 108 (805)
T ss_pred CEeEeCCCCCC------CCHHHHHHHHHHHHhhccCCCCcCcchhhhHHHHHHHHHHHHHHHhCCCccceEEEEeCChHH
Confidence 58999877633 24444444 44444432 11110 112344567778889999986554 5899999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHH
Q psy8199 326 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIAR 405 (965)
Q Consensus 326 A~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (965)
|+..+..... + .++++||+. ...|.+......... .....+..++.+........... .. .
T Consensus 109 alnlva~~l~-~------~~gd~Iv~t-~~eH~svl~~~~~a~---------~~G~~v~~v~~~~~~~~~~~~~g-~~-~ 169 (805)
T PLN02724 109 ALKLVGETFP-W------SSESHFCYT-LENHNSVLGIREYAL---------EKGAAAIAVDIEEAANQPTNSQG-SV-V 169 (805)
T ss_pred HHHHHHHHCC-C------CCCCeEEEe-eccccchHHHHHHHH---------HcCCeEEeccchhcccccccccc-cc-c
Confidence 9998865431 1 245666664 455655332211100 00112333333210000000000 00 0
Q ss_pred HHHHHHHHHHH----h---CCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhc--------CCeEEEeccccCCCc
Q psy8199 406 CAIFDLEILLK----K---NHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNY--------NIHLIADEIAVGCGR 470 (965)
Q Consensus 406 ~d~~~le~~l~----~---~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~--------g~llI~DEv~tg~gr 470 (965)
.+.++|++.+. . ..+++..|.+.- +.|.+|.+.| ++.+..+++.. ++++++|-+|+ +|.
T Consensus 170 ~~~~~l~~~~~~~l~~~~~~~~~t~LVa~~~-vsN~tG~i~p----i~~i~~~~~~~~~~~~~~g~~~v~vDaaQ~-~g~ 243 (805)
T PLN02724 170 VKSRGLQRRNTSKLQKREDDGEAYNLFAFPS-ECNFSGAKFP----LDLVKLIKDNQHSNFSKSGRWMVLLDAAKG-CGT 243 (805)
T ss_pred cchhhhhhhhhhhhccccccCCCcceEEEEc-cccCCCCcCC----HHHHHHHHHhcccccccCcceEEEeehhhh-cCC
Confidence 01134554431 1 123445666766 8899999998 66565555432 36899999996 543
Q ss_pred ccccccccccCCCcceeeec--cccCCCcccceeeeecHHHHHhhhc---cCCccc-----------------ccccCCC
Q psy8199 471 TGKFFACEHAEIWPDFLCLS--KGITGGYLPLSLVMTTDKIYNSIYY---KNNINI-----------------FLHSHSY 528 (965)
Q Consensus 471 ~G~~~~~~~~~~~pDivt~s--K~l~gG~~pig~v~~~~~i~~~~~~---~~~~~~-----------------~~~~~t~ 528 (965)
. ..+...+.+|+++|| |.++ |...+|++++++++.+.+.. ++.... ..-.+
T Consensus 244 ~----piDv~~~~~Dfl~~S~HK~~G-gP~G~G~L~vr~~~~~~l~p~~~GGg~~~~~~~~~~~~~~~~~~~~rfE~G-- 316 (805)
T PLN02724 244 S----PPDLSRYPADFVVVSFYKIFG-YPTGLGALLVRRDAAKLLKKKYFGGGTVAASIADIDFVKRRERVEQRFEDG-- 316 (805)
T ss_pred C----CCChhhcCCCEEEEecceecc-CCCCceEEEEehhhhhhhcCCccCCCceEEEecccceeeccccHHHHhcCC--
Confidence 2 333334568999987 6554 33458999999887765532 111100 00111
Q ss_pred CCCHHHHHHHHHHHHHHhc---ccHHHHHHHHHHHHHHHHHcccC---CCceeee---------eceeEEEEEEEeecCc
Q psy8199 529 SGNPLACCAALATLEIFNK---DNILQRISQDMKKITKALTSLIT---HPKIINF---------RQKGMIWAFDVIIEDP 593 (965)
Q Consensus 529 ~~~~~~~aaa~a~L~~~~~---~~~~~~~~~~~~~l~~~L~~l~~---~~~i~~v---------~g~G~~~~i~~~~~~~ 593 (965)
+.|.+++++..++|+.+.+ +.+.++.+.+.+++.+.|.++.. .|++... ..++.+++|.+...++
T Consensus 317 T~n~~~i~~l~aal~~l~~ig~~~I~~~~~~L~~~l~~~L~~l~~~~g~~~v~iyg~~~~~~~~~~r~~ivsFnv~~~~~ 396 (805)
T PLN02724 317 TISFLSIAALRHGFKLLNRLTISAIAMHTWALTHYVANSLRNLKHGNGAPVCVLYGNHTFKLEFHIQGPIVTFNLKRADG 396 (805)
T ss_pred CcchhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCCCCCcccccCEEEEEEEcCCC
Confidence 2456677777778877654 45678888899999999987732 1233211 1356678887752221
Q ss_pred cchhhHHHHHHHHHHHcCcEEeec----------------------------------------CCEEEEeCCcccCHHH
Q psy8199 594 EQIETFSKKFFVAALKNELLLRPI----------------------------------------GNTVYLMPPYILNKNE 633 (965)
Q Consensus 594 ~~~~~~~~~~~~~l~~~Gi~~~~~----------------------------------------~~~lR~~p~~~~t~~~ 633 (965)
..- . ...+...+.++||.++.+ .+++|+|..+..|.+|
T Consensus 397 ~~v-~-~~~v~~l~~~~gI~vR~G~~Ca~~~~~~~lg~~~~~l~~~~~~~~~c~~~~~~~~~~~~G~vRvS~g~ynt~eD 474 (805)
T PLN02724 397 SWV-G-HREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHKDLQANFEAGHVCWDDQDVIHGRPTGAVRVSFGYMSTFED 474 (805)
T ss_pred CEe-C-HHHHHHHHHhcCcEEeeccccCchHHHHHcCCCHHHHHHHhhcCCccCchhheecCcccceEEEEcCccCCHHH
Confidence 111 0 112333334567766420 1679999999999999
Q ss_pred HHHHHHhhhccc
Q psy8199 634 IQHMTSAIFQTF 645 (965)
Q Consensus 634 i~~~~~~l~~~~ 645 (965)
++.+++.+.+..
T Consensus 475 vd~lv~~l~~~~ 486 (805)
T PLN02724 475 CQKFIDFIISSF 486 (805)
T ss_pred HHHHHHHHHHHh
Confidence 999999988744
|
|
| >TIGR00238 KamA family protein | Back alignment and domain information |
|---|
Probab=99.21 E-value=7.3e-10 Score=120.93 Aligned_cols=192 Identities=14% Similarity=0.164 Sum_probs=138.9
Q ss_pred eEeeccCCCCCCCCCCCCCCcCCCCcccccCCCHHHHHHHHHHHHHC-CCCEEEEeeccCCCCcccHHHHHHHHHHHHh-
Q psy8199 684 LLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSD-GATRFCMGAAWRELKDRDLDNIENMICEVKK- 761 (965)
Q Consensus 684 ~i~~~s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~-g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~- 761 (965)
.+.+ |++|+.+|.||..+...... ...+.+++.+.+..+.+. |+++|.|+||+ |+.. +-+.+.++++.+++
T Consensus 116 ll~~-T~gCn~~C~yC~~~~~~~~~----~~~~~~~~~~~i~~i~~~~~i~eV~lsGGD-PLl~-~d~~L~~ll~~L~~i 188 (331)
T TIGR00238 116 LFLV-KGGCAVNCRYCFRRHFPYKE----NPGNKKKWQKALDYIAEHPEIIEILISGGD-PLMA-KDHELEWLLKRLEEI 188 (331)
T ss_pred EEEe-CCCCCCCCcCCCCCCcCCCC----CCccHHHHHHHHHHHHhCCCcCEEEEECCc-cccC-CHHHHHHHHHHHHhc
Confidence 4555 99999999999754321111 112357777777776654 89999998875 5443 22345666666655
Q ss_pred ---cCcEeEEec-----CCCCHHHHHHHHHhCCCeEeccCCC-CHHHHhcccCCCCHHHHHHHHHHHHHcCCcee--eeE
Q psy8199 762 ---IGLETCLTL-----GMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGINIC--CGG 830 (965)
Q Consensus 762 ---~~~~i~~~~-----~~~~~e~l~~Lk~aG~~~i~i~~es-~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~--~~~ 830 (965)
..+.+.++. ..++++.++.|+++|+..+.+.... .+++ .+...++++.++++|+.+. +.+
T Consensus 189 ~~~~~IRi~tr~~~~~P~rit~el~~~L~~~~~~~~~vsh~nh~~Ei---------~~~~~~ai~~L~~aGi~v~~qtvL 259 (331)
T TIGR00238 189 PHLVRLRIGTRLPVVIPQRITDELCELLASFELQLMLVTHINHCNEI---------TEEFAEAMKKLRTVNVTLLNQSVL 259 (331)
T ss_pred CCccEEEeecCCCccCchhcCHHHHHHHHhcCCcEEEEccCCChHhC---------CHHHHHHHHHHHHcCCEEEeecce
Confidence 245554432 3369999999999999988888766 3332 2678899999999999776 445
Q ss_pred EEecCCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
Q psy8199 831 IIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTS 896 (965)
Q Consensus 831 i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~ 896 (965)
+-|..++.+++.++.+.+.+++ +.-..++.+.|..|+ .+-..+.++..+++..+|-.++..
T Consensus 260 l~gvnD~~~~l~~L~~~l~~~g--V~pyyl~~~~~~~g~---~~f~~~~~~~~~i~~~l~~~~sG~ 320 (331)
T TIGR00238 260 LRGVNDRAQILAKLSIALFKVG--IIPYYLHYLDKVQGA---KHFLVPDAEAAQIVKELARLTSGY 320 (331)
T ss_pred ECCcCCCHHHHHHHHHHHhhcC--eecCeecCcCCCCCc---ccccCCHHHHHHHHHHHHhcCCCC
Confidence 5555688999999999999998 777777888888887 334578999999999999888764
|
Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein. |
| >PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=99.20 E-value=9.6e-10 Score=122.15 Aligned_cols=240 Identities=15% Similarity=0.202 Sum_probs=151.7
Q ss_pred cccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccC
Q psy8199 289 VMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTN 368 (965)
Q Consensus 289 ~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~ 368 (965)
+.++++.++....|+++|+++.+ -+.++.++||..|+.+++..... .+++|++.+..|+|.....
T Consensus 47 ~~Y~R~gnPt~~~le~~la~Le~--g~~a~~~~SGmaAi~~~l~~ll~--------~Gd~iv~~~~~Y~~t~~~~----- 111 (386)
T PF01053_consen 47 YIYSRYGNPTVRALEQRLAALEG--GEDALLFSSGMAAISAALLALLK--------PGDHIVASDDLYGGTYRLL----- 111 (386)
T ss_dssp CSBTTTC-HHHHHHHHHHHHHHT---SEEEEESSHHHHHHHHHHHHS---------TTBEEEEESSSSHHHHHHH-----
T ss_pred cceeccccccHHHHHHHHHHhhc--ccceeeccchHHHHHHHHHhhcc--------cCCceEecCCccCcchhhh-----
Confidence 44567788999999999999984 47899999999999999886654 4688999999998862111
Q ss_pred CcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHH
Q psy8199 369 IQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLV 448 (965)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l 448 (965)
..........+.++.. .|+++++++++ +++.+|++|+ +.|+...+++ +++|
T Consensus 112 ----~~~l~~~gv~v~~~d~-----------------~d~~~l~~~l~---~~t~~v~~Es-psNP~l~v~D----l~~i 162 (386)
T PF01053_consen 112 ----EELLPRFGVEVTFVDP-----------------TDLEALEAALR---PNTKLVFLES-PSNPTLEVPD----LEAI 162 (386)
T ss_dssp ----HHCHHHTTSEEEEEST-----------------TSHHHHHHHHC---TTEEEEEEES-SBTTTTB-------HHHH
T ss_pred ----hhhhcccCcEEEEeCc-----------------hhHHHHHhhcc---ccceEEEEEc-CCCccccccc----HHHH
Confidence 1111122223444432 37899999985 4799999999 8888877776 9999
Q ss_pred HHHHHhcC-CeEEEeccccCCCcccccccccccCCCcceee--eccccCC-Ccccceeeeec--HHHHHhhhccCCcccc
Q psy8199 449 REICNNYN-IHLIADEIAVGCGRTGKFFACEHAEIWPDFLC--LSKGITG-GYLPLSLVMTT--DKIYNSIYYKNNINIF 522 (965)
Q Consensus 449 ~~l~~~~g-~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt--~sK~l~g-G~~pig~v~~~--~~i~~~~~~~~~~~~~ 522 (965)
+++|+++| +++|+|...... ..+.-+....|+++ .+|-++| |=.-.|+++++ +++++.+... ..
T Consensus 163 ~~~a~~~g~~~~vVDnT~atp------~~~~pL~~GaDivv~S~TKyl~Ghsdv~~G~vv~~~~~~~~~~l~~~----~~ 232 (386)
T PF01053_consen 163 AKLAKEHGDILVVVDNTFATP------YNQNPLELGADIVVHSATKYLSGHSDVMGGAVVVNGSSELYDRLREF----RR 232 (386)
T ss_dssp HHHHHHTTT-EEEEECTTTHT------TTC-GGGGT-SEEEEETTTTTTTSSSE-EEEEEESSHHHHHHHHHHH----HH
T ss_pred HHHHHHhCCceEEeeccccce------eeeccCcCCceEEEeeccccccCCcceeeEEEEECchhhhhhhhcch----hh
Confidence 99999998 999999976321 22333334478875 5688876 22335666654 4676655431 01
Q ss_pred cccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcccCCCceee------------------eeceeEEE
Q psy8199 523 LHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIIN------------------FRQKGMIW 584 (965)
Q Consensus 523 ~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~i~~------------------v~g~G~~~ 584 (965)
..|.+ .+|..+...+..|+.+.- ..++..++...+.+.|++- |.|.. ..|-|.++
T Consensus 233 ~~G~~--~~p~da~ll~rgl~Tl~~--R~~~~~~nA~~lA~~L~~h---p~V~~V~yPgl~s~p~~~~~~~~~~g~ggl~ 305 (386)
T PF01053_consen 233 LLGAT--LSPFDAWLLLRGLRTLPL--RMERQNENAEALAEFLEEH---PKVKRVYYPGLPSHPQHELAKRQMSGGGGLL 305 (386)
T ss_dssp HHT-B----HHHHHHHHHHHTTHHH--HHHHHHHHHHHHHHHHHTS---TTEEEEEETTSTTSTTHHHHHHHCSSCTSEE
T ss_pred hcCcc--chHHHHHHHhcCCCcHHH--HHHHHHHHHHHHHHHHHhC---CCCCeEEEcccccccceeeeeecccccCcee
Confidence 12222 356666655555544321 2555666777777777543 33332 23666799
Q ss_pred EEEEe
Q psy8199 585 AFDVI 589 (965)
Q Consensus 585 ~i~~~ 589 (965)
+|++.
T Consensus 306 sf~l~ 310 (386)
T PF01053_consen 306 SFELK 310 (386)
T ss_dssp EEEES
T ss_pred EEEec
Confidence 99996
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B .... |
| >COG4277 Predicted DNA-binding protein with the Helix-hairpin-helix motif [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.1e-10 Score=114.48 Aligned_cols=193 Identities=12% Similarity=0.164 Sum_probs=142.7
Q ss_pred cCCCCCCCCCCCCCCcCCCCcccccCCCHHHHHHHHHHHHHC-CCCEEEEeeccCCCCcccHHHHHHHHHHHHh-cCcEe
Q psy8199 689 TGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSD-GATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLET 766 (965)
Q Consensus 689 s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~-g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~-~~~~i 766 (965)
||.|-++|.||-.+.. ...++.+ ++++||++.-....+. -+..+++.+|--..+++..|...+.++.++- .+..-
T Consensus 61 TN~CiyDC~YCINr~s--~~~pra~-ftp~Eiv~ltlnfYrRnYIeGLFLSSGvi~~~DyTmE~mi~var~LRle~~f~G 137 (404)
T COG4277 61 TNFCIYDCAYCINRSS--NDTPRAR-FTPEEIVDLTLNFYRRNYIEGLFLSSGVIKNPDYTMEEMIEVARILRLEHKFRG 137 (404)
T ss_pred hhhHHHhhHHHhcccc--CCCcccc-cCHHHHHHHHHHHHHHhhhhhheeccccccCcchHHHHHHHHHHHHhhccccCc
Confidence 8999999999986542 3344566 8999999997766655 5778888888766677888999999888873 33333
Q ss_pred EEecCCCCHHHHHHHHHhC--CCeEeccCCC-CHHHHhcccCCCCHHHHHHHHHHHHH---------------cCC-c--
Q psy8199 767 CLTLGMLNENQAYRLKKVG--LDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRN---------------VGI-N-- 825 (965)
Q Consensus 767 ~~~~~~~~~e~l~~Lk~aG--~~~i~i~~es-~~~~~~~i~~~~~~~~~~~~i~~~~~---------------~Gi-~-- 825 (965)
.++...+....-+..+++| +|++++++|. .++.++.+-+.+.+.+.++.+..++. -.+ +
T Consensus 138 YIHlK~IPgas~~li~eaglyadRvSiNIElp~~~~lk~lap~K~p~dI~r~Mg~ir~~i~e~~e~~~r~r~tp~fapaG 217 (404)
T COG4277 138 YIHLKIIPGASPDLIKEAGLYADRVSINIELPTDDGLKLLAPEKDPTDILRSMGWIRLKILENAEDKRRKRHTPEFAPAG 217 (404)
T ss_pred EEEEEecCCCCHHHHHHHhhhhheeEEeEecCCcchhhhhCCCCChHHHHHHHHHHHHHHhhcccchhhhccCccccCCC
Confidence 4443333333444555677 6999999999 89999999999988888888777665 111 2
Q ss_pred eeeeEEEec-CCCHHHHHHHHHHHHh-cCCCCCceeeccccccCCCCCCCCCCCCHHHHHHHH
Q psy8199 826 ICCGGIIGL-SESRDQRAELIFQLAN-LNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTI 886 (965)
Q Consensus 826 v~~~~i~Gl-~et~ed~~~~l~~l~~-l~~~~~~i~~~~~~P~~gT~l~~~~~~~~~~~~~~i 886 (965)
-++.+|+|- |||+++++..-..+.. .. ...|.++.|.|.|++|+.....++.....++.
T Consensus 218 QSTQmivGA~~~tD~~Ilsrs~~ly~~y~--lkRVyySaf~Pv~~s~~lp~~~pplmRehRLY 278 (404)
T COG4277 218 QSTQMIVGADGETDEDILSRSENLYGRYS--LKRVYYSAFSPVPSSPLLPDDKPPLMREHRLY 278 (404)
T ss_pred CceEEEEecCCCchHHHHHHHHHHhhccc--eeEEEeecccccCCCCCCcccCCchhHHHHHH
Confidence 347899999 8999999988887766 34 67889999999999998764444444434443
|
|
| >PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.9e-09 Score=117.84 Aligned_cols=188 Identities=16% Similarity=0.167 Sum_probs=135.1
Q ss_pred cCCCCCCCCCCCCCCcCCCCcccccCCCHHHHHHHHHHHHH-CCCCEEEEeeccCCCCcccHHHHHHHHHHHHh-cCc--
Q psy8199 689 TGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKS-DGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGL-- 764 (965)
Q Consensus 689 s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~-~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~-~~~-- 764 (965)
+.+|+.+|.||..... + ..+.++.+||++++..+.+ .+++.+.++|.+.|+. .++.+++.++.+++ .++
T Consensus 110 q~GC~~~C~FC~tg~~-~----~~r~lt~~EI~~qv~~~~~~~~i~~IvfmG~GEPl~--n~~~vi~~l~~l~~~~gl~~ 182 (349)
T PRK14463 110 QVGCAMGCAFCLTGTF-R----LTRNLTTAEIVNQVCAVKRDVPVRNIVFMGMGEPLA--NLDNVIPALQILTDPDGLQF 182 (349)
T ss_pred cCCcCCCCccCCCCCC-C----CCCCCCHHHHHHHHHHHHhcCCccEEEEecCCcchh--cHHHHHHHHHHhhcccccCc
Confidence 8999999999974431 1 1345899999999877654 3789999999666754 57888998888874 454
Q ss_pred ---EeEE-ecCCCCHHHHHHHHHhCCCeEeccCCC-CHHHHhccc---CCCCHHHHHHHHHHHHH-cCCcee--eeEEEe
Q psy8199 765 ---ETCL-TLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDII---STRDYENRLNTLKNVRN-VGINIC--CGGIIG 833 (965)
Q Consensus 765 ---~i~~-~~~~~~~e~l~~Lk~aG~~~i~i~~es-~~~~~~~i~---~~~~~~~~~~~i~~~~~-~Gi~v~--~~~i~G 833 (965)
.+.+ +.|. .+ .+..|.+..-..+.+++++ +++.++++. +..+.++.+++++...+ .+-++. ..+|-|
T Consensus 183 s~r~itVsTnGl-~~-~i~~l~~~~~~~LaiSL~a~~~e~r~~I~pink~~~l~~l~~a~~~~~~~~~~~v~ieyvLI~G 260 (349)
T PRK14463 183 STRKVTVSTSGL-VP-EMEELGREVTVNLAVSLNATTDEVRDRIMPVNRRYPLAELLAACKAFPLPGRRKITIEYVMIRG 260 (349)
T ss_pred CCceEEEECCCc-hH-HHHHHhhccCeEEEEeCCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhcCCeEEEEEEEeCC
Confidence 4554 3343 33 3444444333345689999 999999984 45688888888877654 334554 456666
Q ss_pred cCCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCCCCCCCHHHHHHHHHHHHH
Q psy8199 834 LSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARI 891 (965)
Q Consensus 834 l~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~~~~~~~~~~~~~ia~~R~ 891 (965)
.+++.+++.+..++++.++ ..|.+.+|.|.+|. ..++++.+++.+...+++.
T Consensus 261 vNDs~e~~~~L~~ll~~l~---~~vnlIPyn~~~~~---~~~~ps~e~i~~f~~~L~~ 312 (349)
T PRK14463 261 LNDSLEDAKRLVRLLSDIP---SKVNLIPFNEHEGC---DFRSPTQEAIDRFHKYLLD 312 (349)
T ss_pred CCCCHHHHHHHHHHHhccC---ceEEEEecCCCCCC---CCCCCCHHHHHHHHHHHHH
Confidence 7899999999999999987 46777778777764 4466788887777766664
|
|
| >PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.3e-09 Score=116.66 Aligned_cols=192 Identities=14% Similarity=0.174 Sum_probs=140.0
Q ss_pred cCCCCCCCCCCCCCCcCCCCcccccCCCHHHHHHHHHHHHH---C--------CCCEEEEeeccCCCCcccHHHHHHHHH
Q psy8199 689 TGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKS---D--------GATRFCMGAAWRELKDRDLDNIENMIC 757 (965)
Q Consensus 689 s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~---~--------g~~~i~l~~g~~~~~~~~~~~~~~~~~ 757 (965)
..||+.+|.||+.... .-.+.++++||++++..+.+ . .++.|.|.|-++|+. .++.+.++++
T Consensus 128 QvGC~m~C~FCatg~~-----g~~RnLt~~EIv~Qv~~~~~~~~~~~~~~~~~~i~nVvfmGmGEPLl--N~d~V~~~i~ 200 (373)
T PRK14459 128 QAGCGMACPFCATGQG-----GLTRNLSTAEIVEQVRAAARALRDGEVPGGPGRLSNVVFMGMGEPLA--NYKRVVAAVR 200 (373)
T ss_pred cCCCCCcCCCCCCCCC-----CCCCccCHHHHHHHHHHHHHHhhhcccccCCCceeEEEEecCCcchh--hHHHHHHHHH
Confidence 6899999999985431 12345999999999976643 1 166788888455743 3788999999
Q ss_pred HHHh-----cCc---EeEEecCCCCHHHHHHHHHhCCC-eEeccCCC-CHHHHhcccCC---CCHHHHHHHHHHH-HHcC
Q psy8199 758 EVKK-----IGL---ETCLTLGMLNENQAYRLKKVGLD-YYNHNLDT-SPKLYGDIIST---RDYENRLNTLKNV-RNVG 823 (965)
Q Consensus 758 ~i~~-----~~~---~i~~~~~~~~~e~l~~Lk~aG~~-~i~i~~es-~~~~~~~i~~~---~~~~~~~~~i~~~-~~~G 823 (965)
.+++ .++ .++++.--+ ...+++|.+.+++ .+.+++.+ +++.++++.+. .+.++.+++++.. ++.|
T Consensus 201 ~l~~~~~~g~gis~r~ITvST~Gl-~~~i~~la~~~l~~~LavSLha~d~e~R~~l~p~n~~~~l~~ll~a~~~~~~~~g 279 (373)
T PRK14459 201 RITAPAPEGLGISARNVTVSTVGL-VPAIRKLADEGLPVTLAVSLHAPDDELRDELVPVNTRWKVDEVLDAARYYADATG 279 (373)
T ss_pred HHhCcccccCCccCCEEEEECcCc-hhHHHHHHHhcCCeEEEEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhC
Confidence 8876 344 566644333 2467888888887 89999999 99999999873 6789999996664 4678
Q ss_pred Ccee--eeEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCCCCCCCHHHHHHHHHHHHH
Q psy8199 824 INIC--CGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARI 891 (965)
Q Consensus 824 i~v~--~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~~~~~~~~~~~~~ia~~R~ 891 (965)
.++. .-+|=|.+++.++..+..++++.++.....|.+.+|.|.++.++ ..++.+.+.+...+.+.
T Consensus 280 rrv~ieyvLi~GvNDs~e~a~~L~~llk~~~~~~~~VNLIpyNp~~~~~y---~~~~~~~~~~F~~~L~~ 346 (373)
T PRK14459 280 RRVSIEYALIRDINDQPWRADLLGKKLHGRGGGWVHVNLIPLNPTPGSKW---TASPPEVEREFVRRLRA 346 (373)
T ss_pred CEEEEEEEEeCCCCCCHHHHHHHHHHHhhccCCCeEEEEEccCCCCCCCC---cCCCHHHHHHHHHHHHH
Confidence 7665 45555667999999999999999831125688888888887754 34566766666665553
|
|
| >PRK14468 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.8e-09 Score=116.31 Aligned_cols=188 Identities=14% Similarity=0.164 Sum_probs=137.3
Q ss_pred cCCCCCCCCCCCCCCcCCCCcccccCCCHHHHHHHHHHHHHC------CCCEEEEeeccCCCCcccHHHHHHHHHHHHh-
Q psy8199 689 TGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSD------GATRFCMGAAWRELKDRDLDNIENMICEVKK- 761 (965)
Q Consensus 689 s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~------g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~- 761 (965)
+.+|+.+|.||..... ...+.++.+||++++...... .++.|.|+|.++|+.. ++.+.+.++.+..
T Consensus 100 q~GC~l~C~fC~tg~~-----g~~r~Lt~~EI~~qv~~~~~~~g~~~~~i~~Vvf~GmGEPlln--~~~v~~~i~~l~~~ 172 (343)
T PRK14468 100 MVGCPAGCAFCATGAM-----GFGRNLTAAEILDQVLAVAGHEGISPREIRNVVLMGMGEPLLN--YENVLKAARIMLHP 172 (343)
T ss_pred cCCCCCcCCCCCCCCC-----CCCCCCCHHHHHHHHHHHHhhcCcCcCCccEEEEeccCccccC--HHHHHHHHHHhccc
Confidence 7899999999975432 123458999999998765443 2578889886667554 7888888888743
Q ss_pred cCc-----EeEE-ecCCCCHHHHHHHHHhCCC-eEeccCCC-CHHHHhcccC---CCCHHHHHHHHHH-HHHcCCcee--
Q psy8199 762 IGL-----ETCL-TLGMLNENQAYRLKKVGLD-YYNHNLDT-SPKLYGDIIS---TRDYENRLNTLKN-VRNVGINIC-- 827 (965)
Q Consensus 762 ~~~-----~i~~-~~~~~~~e~l~~Lk~aG~~-~i~i~~es-~~~~~~~i~~---~~~~~~~~~~i~~-~~~~Gi~v~-- 827 (965)
.++ .+++ +.|. ...+++|.+++++ .+.+++.+ +++.++++.+ ..+.++.+++++. .++.+.++.
T Consensus 173 ~g~~l~~r~itvST~G~--~~~i~~L~~~~l~~~LaiSL~a~d~e~r~~i~p~~~~~~l~~ll~~l~~~~~~~~~~V~ie 250 (343)
T PRK14468 173 QALAMSPRRVTLSTVGI--PKGIRRLAEEDLGVRLALSLHAPDEETRQRIIPTAHRYSIAEIMAAVRHYQAVTGRRVTLE 250 (343)
T ss_pred ccccccCceEEEECCCC--hHHHHHHHHhCcCcEEEEEcCCCCHHHHHHhccccccCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 333 3444 3343 4678889999987 69999999 9999999974 3478999999974 455565555
Q ss_pred eeEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCCCCCCCHHHHHHHHHHHHH
Q psy8199 828 CGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARI 891 (965)
Q Consensus 828 ~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~~~~~~~~~~~~~ia~~R~ 891 (965)
.-+|=|..++.|++.+..++++.+. ..|.+.+|.|.++. ...+++.+++.+...+++.
T Consensus 251 yvLI~GvNDs~e~~~~L~~ll~~~~---~~VnLIPynp~~~~---~~~~ps~e~i~~f~~~L~~ 308 (343)
T PRK14468 251 YTMLKGVNDHLWQAELLADLLRGLV---SHVNLIPFNPWEGS---PFQSSPRAQILAFADVLER 308 (343)
T ss_pred EEEeCCCcCCHHHHHHHHHHHhcCC---cEEEEEcCCCCCCC---CCCCCCHHHHHHHHHHHHH
Confidence 5555566799999999999999986 56777777776653 3456788777776666554
|
|
| >PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.6e-09 Score=123.00 Aligned_cols=247 Identities=17% Similarity=0.154 Sum_probs=147.4
Q ss_pred CCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcC
Q psy8199 292 SNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQS 371 (965)
Q Consensus 292 ~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~ 371 (965)
.+..++....++++++++.+ .+..++++||+.|+.+|+.... .++++||+....|++......
T Consensus 64 ~r~~~pt~~~le~~la~l~g--~~~~v~fsSG~~Ai~~al~~ll--------~~Gd~VI~~~~~y~~t~~~~~------- 126 (437)
T PRK05613 64 SRLTNPTVEALENRIASLEG--GVHAVAFASGQAAETAAILNLA--------GAGDHIVTSPRLYGGTETLFL------- 126 (437)
T ss_pred eCccChHHHHHHHHHHHHhC--CCeEEEeCCHHHHHHHHHHHhc--------CCCCEEEECCCccHHHHHHHH-------
Confidence 45667888999999999985 3678888889999998887552 256788888777766411100
Q ss_pred ccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHH
Q psy8199 372 FKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREI 451 (965)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l 451 (965)
.........+.+++.+ .|++++++++. +++.+|++|. +.|+.|.+.+ +++|+++
T Consensus 127 --~~l~~~Gi~v~~vd~~----------------~d~e~l~~~l~---~~tk~V~~e~-~~Np~~~v~d----i~~I~~l 180 (437)
T PRK05613 127 --VTLNRLGIEVTFVENP----------------DDPESWQAAVQ---PNTKAFFGET-FANPQADVLD----IPAVAEV 180 (437)
T ss_pred --HHHHhcCeEEEEECCC----------------CCHHHHHHhCC---ccCeEEEEEC-CCCCCCcccC----HHHHHHH
Confidence 0011112234444322 25678888875 3467788888 7788888887 9999999
Q ss_pred HHhcCCeEEEeccccCCCcccccccccccCCCcceeeec--cccCCCccccee-eeecHHHH-H----------hhhccC
Q psy8199 452 CNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS--KGITGGYLPLSL-VMTTDKIY-N----------SIYYKN 517 (965)
Q Consensus 452 ~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~s--K~l~gG~~pig~-v~~~~~i~-~----------~~~~~~ 517 (965)
|+++|+++|+|.++. .|.. +.-.....|++++| |-++|-.--+|. ++.+.+.. . .+....
T Consensus 181 a~~~gi~livD~t~a-~g~~-----~~p~~~GaDivv~S~~K~l~G~gd~~gG~vv~~~~~~~~~~~~~~~~~~~~~~~~ 254 (437)
T PRK05613 181 AHRNQVPLIVDNTIA-TAAL-----VRPLELGADVVVASLTKFYTGNGSGLGGVLIDGGKFDWTVERDGKPVFPYFVTPD 254 (437)
T ss_pred HHHcCCeEEEECCCc-cccc-----cChHHhCCCEEEeeccceecCCCcceeEEEEecCcccccccccccccCCCCCCCc
Confidence 999999999999985 3221 11112335888765 877762123444 44332210 0 000000
Q ss_pred ------------C-------cccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHccc-----CCCc
Q psy8199 518 ------------N-------INIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLI-----THPK 573 (965)
Q Consensus 518 ------------~-------~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~-----~~~~ 573 (965)
. ............+|..+...+..|+.+.- ..++-.++..++.+.|++.. .+|+
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~p~~a~l~~rgl~TL~l--R~~~~~~nA~~lA~~L~~hp~V~~V~yPg 332 (437)
T PRK05613 255 PAYHGLKYADLGAPAFGLKARAGLLRDTGATLSPFNAWVTAQGLDTLSL--RLERHNENAIKVAEFLNNHEKVAKVNFAG 332 (437)
T ss_pred cccccccccccchHHHHHHHHHHHHHhcCCCCCHHHHHHHHcccCcHHH--HHHHHHHHHHHHHHHHHcCCCcceEECCC
Confidence 0 00011122234567777766666655432 24555667777777776542 2344
Q ss_pred eee-----------eeceeEEEEEEEe
Q psy8199 574 IIN-----------FRQKGMIWAFDVI 589 (965)
Q Consensus 574 i~~-----------v~g~G~~~~i~~~ 589 (965)
+.. ..+-|.|++|++.
T Consensus 333 l~~~p~~~~~~~~~~~g~gg~~sf~l~ 359 (437)
T PRK05613 333 LKDSPWYATKEKLGLKYTGSVLSFDIK 359 (437)
T ss_pred CCCCccHHHHHHhcCCCCceEEEEEec
Confidence 321 1345889999985
|
|
| >KOG0634|consensus | Back alignment and domain information |
|---|
Probab=99.16 E-value=9.9e-09 Score=108.94 Aligned_cols=285 Identities=14% Similarity=0.130 Sum_probs=179.1
Q ss_pred eEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCC
Q psy8199 316 HCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNIN 395 (965)
Q Consensus 316 ~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (965)
.++.++|.+.+.+.+++++.+ .++.|++=+.+|.+. +..+- + .++.++|.+-+...
T Consensus 126 diiit~G~t~~l~~~l~~~~N--------~gd~vlie~~ty~~A-L~s~~------------a--~gv~~ipv~md~~G- 181 (472)
T KOG0634|consen 126 DIIITNGNTDGLFKVLRTLIN--------RGDHVLIEEYTYPSA-LQSME------------A--LGVKIIPVKMDQDG- 181 (472)
T ss_pred eEEEecCCchHHHHHHHHhhc--------CCCceEEecccchHH-HHhcc------------c--cCceEEeccccCCC-
Confidence 789999999999999999976 467788777777544 11111 1 13455565432222
Q ss_pred CCCChhHHHHHHHHHHHHHHHhCC------CcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCC
Q psy8199 396 KGNSANEIARCAIFDLEILLKKNH------NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCG 469 (965)
Q Consensus 396 ~~~~~~~~~~~d~~~le~~l~~~~------~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~g 469 (965)
-+++.|++.+..+. .+-...-+=|--||++|... +.+-=++|.+||++|++++|-||+|- |-
T Consensus 182 ----------i~pE~l~~il~~w~~~~~k~~~p~vlYTIPTgqNPTG~tl-s~errk~iy~LArKyDfLIVeDdpYy-~L 249 (472)
T KOG0634|consen 182 ----------IDPESLEEILSNWKPGSYKKPKPHVLYTIPTGQNPTGNTL-SLERRKKIYQLARKYDFLIVEDDPYY-FL 249 (472)
T ss_pred ----------CCHHHHHHHHhcCCcccccCCCCeEEEeCcCCCCCCCCcc-CHHHHHHHHHHHHHcCEEEEecCccc-ee
Confidence 26788888887652 12344555565788999766 77778999999999999999999985 32
Q ss_pred cccc----------ccc-----------ccccCCCccee---eeccccCCCcccceeeeecHHHHHhhhccCCccccccc
Q psy8199 470 RTGK----------FFA-----------CEHAEIWPDFL---CLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHS 525 (965)
Q Consensus 470 r~G~----------~~~-----------~~~~~~~pDiv---t~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~ 525 (965)
..+. .+. +...+..-.++ +|||-++-| .++|++.+++.+++.+.. ....
T Consensus 250 q~~~y~~~~~~~~p~~s~~~f~k~l~~sflslDtdGrVIr~dSFSKiiaPG-lRlG~it~~~~~l~ril~------~ae~ 322 (472)
T KOG0634|consen 250 QMNTYNPSLELESPAHSSSMFLKSLVPSFLSLDTDGRVIRNDSFSKIIAPG-LRLGWITGNSLFLKRILD------LAEV 322 (472)
T ss_pred eccccCCCccccCccccHHHHHHhhcCCcccccccccEEeccchhhhhcCc-ceeEEeecCHHHHHHHhh------hcce
Confidence 2221 001 00111122233 799999988 799999999977776654 1233
Q ss_pred CCCCCCHHHHHHHHHHHHHHhcccHHHHHHHH-------HHHHHHHHHcccCCCc--ee-eeeceeEEEEEEEe--ecCc
Q psy8199 526 HSYSGNPLACCAALATLEIFNKDNILQRISQD-------MKKITKALTSLITHPK--II-NFRQKGMIWAFDVI--IEDP 593 (965)
Q Consensus 526 ~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~-------~~~l~~~L~~l~~~~~--i~-~v~g~G~~~~i~~~--~~~~ 593 (965)
.|-+.+.+++....+.|+...++++++.+.+. ...+...|.. ..|. .. ..+..|+|+++++. ..+.
T Consensus 323 ~t~~pSg~sq~iv~a~l~~wgqeG~~~wi~~l~~~Yt~Rrn~~l~Al~k--ylp~~~~~~~~P~aGmFiwv~i~~~~~~~ 400 (472)
T KOG0634|consen 323 ATSGPSGFSQGIVYAMLKRWGQEGFLRWIQHLRSSYTERRNALLSALDK--YLPKSVCEYHPPKAGMFIWVEIPYINFDT 400 (472)
T ss_pred eecCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCeeEEecCCcceEEEEEeccccccc
Confidence 55567778888888999877666544443332 2233333322 2232 22 34556888888874 0111
Q ss_pred cc-hhhHHHHHHHHHHHcCcEEeecC-----------C-EEEEeCCcccCHHHHHHHHHhhhcccc
Q psy8199 594 EQ-IETFSKKFFVAALKNELLLRPIG-----------N-TVYLMPPYILNKNEIQHMTSAIFQTFN 646 (965)
Q Consensus 594 ~~-~~~~~~~~~~~l~~~Gi~~~~~~-----------~-~lR~~p~~~~t~~~i~~~~~~l~~~~~ 646 (965)
.. .....+.+...+.++||.+.++. . .+|++-++ .+.+++++.++++..++.
T Consensus 401 ~~~i~q~~e~i~~~~vk~gV~~v~G~~F~v~p~~s~~kiffRls~a~-a~~e~l~~g~~rf~~~ik 465 (472)
T KOG0634|consen 401 KKSINQIEEIIFIKAVKNGVKLVCGSWFMVDPESSWSKIFFRLSIAF-AEPEKLDEGIERFGSVIK 465 (472)
T ss_pred ccchHHHHHHHHHHHHHCCeEEecCceeEEcCccCCCcceEEEEeec-CCHHHHHHHHHHHHHHHH
Confidence 11 12234456778889999887531 2 78888653 345578888877765543
|
|
| >KOG4355|consensus | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.1e-10 Score=115.37 Aligned_cols=251 Identities=14% Similarity=0.176 Sum_probs=165.0
Q ss_pred cCHHHHHHHHHhhhcccccHHHHHHhcCCCchhHHHHHHHHHHHhcCCCeEEEeEeEeeccCCCCCCCCCCCCCCcCCCC
Q psy8199 629 LNKNEIQHMTSAIFQTFNELDEVINLFNLPFNDLLFRAQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHYNTE 708 (965)
Q Consensus 629 ~t~~~i~~~~~~l~~~~~~~~e~l~l~~~~~~~l~~~a~~~~~~~~~g~~~~~~~~i~~~s~~C~~~C~fC~~~~~~~~~ 708 (965)
+.-.+||+.++..++.+.- ..+.||.....-- ...-++|+..+ .-+|.+ ..+|-+.|.||.... ....
T Consensus 145 igvqqidrvvevveetlkg--hsvrll~rr~~ga-ldlpkvrknpl-------ieIi~i-ntgclgaCtyckTkh-arg~ 212 (547)
T KOG4355|consen 145 IGVQQIDRVVEVVEETLKG--HSVRLLTRRTLGA-LDLPKVRKNPL-------IEIISI-NTGCLGACTYCKTKH-ARGL 212 (547)
T ss_pred eehhhhhHHHHHHHHHhcc--ceEeeeecccccc-cCchhhccCCc-------eEEEEe-ccccccccccccccc-cccc
Confidence 4456788888777654432 1223332110000 01125555544 345666 889999999996432 1222
Q ss_pred cccccCCCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcc----cHHHHHHHH-HHHHh-cCcEeEEecCCCCHHHHHHHH
Q psy8199 709 ITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDR----DLDNIENMI-CEVKK-IGLETCLTLGMLNENQAYRLK 782 (965)
Q Consensus 709 ~~~~~~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~----~~~~~~~~~-~~i~~-~~~~i~~~~~~~~~e~l~~Lk 782 (965)
... .+.+++++.++...+.|+.+|.+.+-...-... .+..++..+ +.|.+ ..+.+.+++-+.--+.++.++
T Consensus 213 l~s---y~~dslvervrt~f~egv~eIwltsedTgaygrdig~slp~ll~klv~~iPe~cmlr~gmTnpP~ilehl~e~a 289 (547)
T KOG4355|consen 213 LAS---YPKDSLVERVRTSFEEGVCEIWLTSEDTGAYGRDIGKSLPKLLWKLVEVIPESCMLRAGMTNPPYILEHLEEAA 289 (547)
T ss_pred ccc---CCHHHHHHHHHHHHhcCcEEEEecccccchhhhhhhhhhHHHHHHHHHhcchhhhhhhcCCCCchHHHHHHHHH
Confidence 223 459999999999999999999998754321111 222222222 22222 344444444444344444443
Q ss_pred Hh----CC-CeEeccCCC-CHHHHhcccCCCCHHHHHHHHHHHHH--cCCceeeeEEEec-CCCHHHHHHHHHHHHhcCC
Q psy8199 783 KV----GL-DYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRN--VGINICCGGIIGL-SESRDQRAELIFQLANLNP 853 (965)
Q Consensus 783 ~a----G~-~~i~i~~es-~~~~~~~i~~~~~~~~~~~~i~~~~~--~Gi~v~~~~i~Gl-~et~ed~~~~l~~l~~l~~ 853 (965)
.. .+ ..+++.++| ++.++-+|.+.....+.....+.+.+ -||.+.+.+|.|+ +||+||+.++++.+++.+
T Consensus 290 ~vlrhp~vYsflhvpvqsgsdsvl~emkreyc~~dfk~Vvd~LterVPgi~IATDiIcgFPtETdeDFeeTmeLv~kYK- 368 (547)
T KOG4355|consen 290 FVLRHPRVYSFLHVPVQSGSDSVLTEMKREYCNFDFKIVVDFLTERVPGITIATDIICGFPTETDEDFEETMELVRKYK- 368 (547)
T ss_pred HHhcCCeEEEEEecccccCchhHHHHHHHHHhhhhHHHHHHHHHhhCCCcEEeeeeeecCCCCchHHHHHHHHHHHHcc-
Confidence 32 12 233566899 99999999998888888888888888 7999999999999 699999999999999999
Q ss_pred CCCceeeccccccCCCCCCCCCCCCHHHH----HHHHHHHHHHCCCC
Q psy8199 854 YPESVPINNLVQIKGTPLYGSSILDPLEF----IRTIAVARITMPTS 896 (965)
Q Consensus 854 ~~~~i~~~~~~P~~gT~l~~~~~~~~~~~----~~~ia~~R~~lp~~ 896 (965)
..++-++.|+|.||||-.+....+..+. .++-.++|.+-|..
T Consensus 369 -FPslfInQfyPRpGTPAAkmkki~a~~vkkRTk~ls~lF~sy~pYt 414 (547)
T KOG4355|consen 369 -FPSLFINQFYPRPGTPAAKMKKIPAVEVKKRTKALSELFRSYTPYT 414 (547)
T ss_pred -CchhhhhhcCCCCCChHHhhhcccHHHHHHHHHHHHHHHHhcCCcc
Confidence 7788899999999999988766666444 34455566666654
|
|
| >PRK14469 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.8e-09 Score=116.24 Aligned_cols=188 Identities=15% Similarity=0.206 Sum_probs=135.8
Q ss_pred cCCCCCCCCCCCCCCcCCCCcccccCCCHHHHHHHHHHHHH---CCCCEEEEeeccCCCCcccHHHHHHHHHHHHh----
Q psy8199 689 TGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKS---DGATRFCMGAAWRELKDRDLDNIENMICEVKK---- 761 (965)
Q Consensus 689 s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~---~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~---- 761 (965)
..||+.+|.||..... . ..+.++.+||++++....+ .++..|.+.|-+.|+.. .+.+.++++.+++
T Consensus 108 q~GC~l~C~fC~tg~~---g--~~r~lt~~EI~~qv~~~~~~~~~~v~~Vvf~GmGEPLln--~d~v~~~i~~l~~~~~~ 180 (343)
T PRK14469 108 QVGCPVKCIFCATGQS---G--FVRNLTTGEIVSQILAMEKEEKKKVGNVVYMGMGEPLLN--YENVIKSIKILNHKKMK 180 (343)
T ss_pred cCCCCCcCcCCCCCCC---C--ccccCCHHHHHHHHHHHHHhccCCcCeEEEEccChhhhh--HHHHHHHHHHHhchhcc
Confidence 6999999999974321 1 1234889999999865432 36889999884557544 5667777777753
Q ss_pred -cCc-EeEEe-cCCCCHHHHHHHHHhCCC-eEeccCCC-CHHHHhcccC---CCCHHHHHHHHHHHHH-cCCcee--eeE
Q psy8199 762 -IGL-ETCLT-LGMLNENQAYRLKKVGLD-YYNHNLDT-SPKLYGDIIS---TRDYENRLNTLKNVRN-VGINIC--CGG 830 (965)
Q Consensus 762 -~~~-~i~~~-~~~~~~e~l~~Lk~aG~~-~i~i~~es-~~~~~~~i~~---~~~~~~~~~~i~~~~~-~Gi~v~--~~~ 830 (965)
.+. .++++ .|. .+.++.|.+.|++ .+.+++++ +++.++++.+ ..+.++.+++++...+ .+.++. .-+
T Consensus 181 ~~g~~~itisTnG~--~~~i~~L~~~~l~~~LaiSL~a~~~e~r~~i~p~~~~~~l~~Il~~l~~~~~~~~~~v~i~yvl 258 (343)
T PRK14469 181 NIGIRRITISTVGI--PEKIIQLAEEGLDVKLALSLHAPTNFKRDQIVPLNKKYSIEEIINAVKIYQKKTGNRVTIEYIL 258 (343)
T ss_pred cCCCCeEEEECCCC--hHHHHHHHhhCCCcEEEEEeCCCCHHHHHhhcCcCCCCCHHHHHHHHHHHHHHhCCeEEEEEEE
Confidence 232 45443 343 6788999999998 79999999 8999988753 5689999999887554 355554 446
Q ss_pred EEecCCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCCCCCCCHHHHHHHHHHHHHH
Q psy8199 831 IIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARIT 892 (965)
Q Consensus 831 i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~~~~~~~~~~~~~ia~~R~~ 892 (965)
|-|..++.+|+.+.+++++.++ ..|.+.+|.|.++ ...+++.+++.+...+++..
T Consensus 259 I~g~NDs~ed~~~La~llk~~~---~~VnLIpynp~~~----~~~~ps~e~l~~f~~~l~~~ 313 (343)
T PRK14469 259 IKGFNDEIEDAKKLAELLKGLK---VFVNLIPVNPTVP----GLEKPSRERIERFKEILLKN 313 (343)
T ss_pred ECCCCCCHHHHHHHHHHHhccC---cEEEEEecCCCCc----cCCCCCHHHHHHHHHHHHHC
Confidence 6677799999999999999886 4577777777654 34556777777776666653
|
|
| >TIGR01364 serC_1 phosphoserine aminotransferase | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.1e-09 Score=116.92 Aligned_cols=311 Identities=11% Similarity=0.053 Sum_probs=176.6
Q ss_pred CHHHHHHHHHHHhhccc-----cccCCCCc---HHHHHHHHHHHhhcCC-CCCeEEEcCC-hhHHHHHHHHHHHHHHHhc
Q psy8199 272 NSYINKALKNQLNKLEH-----VMLSNLTH---KPVIKLSEKLSSLTQY-KLGHCFYGSD-GASAVEVALKMSFHYWYNK 341 (965)
Q Consensus 272 ~p~v~~av~~~~~~~~~-----~~~~~~~~---~~~~~la~~l~~~~~~-~~~~v~~~~s-GseA~~~Al~~a~~~~~~~ 341 (965)
+..|++|+.+.+..... ...+.... +...++.+.+.++++. ...+|+|++| ||+|+|+++.....
T Consensus 4 p~~v~~~~~~~~~~~~~~~~~~~~~~hr~~~f~~~~~~~~~~l~~l~~~~~~~~v~~~~gsgT~a~ea~~~nl~~----- 78 (349)
T TIGR01364 4 PEEVLEQAQKELLNFNGTGMSVMEISHRSKEFEAVANEAESDLRELLNIPDNYEVLFLQGGATGQFAAVPLNLLA----- 78 (349)
T ss_pred CHHHHHHHHHHHhCccCCCccccccCCCchHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhcCC-----
Confidence 56788888887764321 11111222 4456777888888863 2346777655 99999999876532
Q ss_pred CCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCc
Q psy8199 342 GFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNK 421 (965)
Q Consensus 342 g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~ 421 (965)
+.+++++...++.|....-+.- -... +..+..+... +++.. .++++++ ++ .+
T Consensus 79 ---~~~~~l~i~~G~fg~r~~~~a~-----------~~g~-~~~~~~~~~~--~~~~~------~~~~~~~--~~---~~ 130 (349)
T TIGR01364 79 ---EGKVADYIVTGAWSKKAAKEAK-----------KYGV-VNVVASGKEG--NYTKI------PDPSTWE--IS---ED 130 (349)
T ss_pred ---CCCeEEEEECCHHHHHHHHHHH-----------HhCC-cEEEeccccC--CCCCC------CCHHhcC--CC---CC
Confidence 4566777766665553211110 0111 1122211000 00000 1333333 11 23
Q ss_pred EEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcceeeec--cccCCCccc
Q psy8199 422 IAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS--KGITGGYLP 499 (965)
Q Consensus 422 ~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~s--K~l~gG~~p 499 (965)
+.+|.+-- .-+++|+..+ ++++.+++++++|-|++ +|. .....+. -|++++| |+++ .-.
T Consensus 131 ~~~v~~th-~ETstGv~~~---------~l~~~~~~l~iVDavss-~g~--~~id~~~----~d~~~~ssqK~lg--P~G 191 (349)
T TIGR01364 131 AAYVHYCA-NETIHGVEFR---------ELPDVKNAPLVADMSSN-ILS--RPIDVSK----FGLIYAGAQKNIG--PAG 191 (349)
T ss_pred CCEEEEcC-CCCcccEecc---------eecccCCCeEEEEcccc-ccC--ccCCHHH----ccEEEEecccccC--CCc
Confidence 33444433 3356777653 67778899999999997 542 2222332 2477765 8773 345
Q ss_pred ceeeeecHHHHHhhhccCCc----cc-ccccCCC-CCCHHHHHHHHHHHHHHhcc-c---HHHHHHHHHHHHHHHHHccc
Q psy8199 500 LSLVMTTDKIYNSIYYKNNI----NI-FLHSHSY-SGNPLACCAALATLEIFNKD-N---ILQRISQDMKKITKALTSLI 569 (965)
Q Consensus 500 ig~v~~~~~i~~~~~~~~~~----~~-~~~~~t~-~~~~~~~aaa~a~L~~~~~~-~---~~~~~~~~~~~l~~~L~~l~ 569 (965)
+|.+.+++++++.+...... .. .....++ +.|-....+..++|+++.++ + +.++.+++.+++++.|+++
T Consensus 192 lg~l~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~~~- 270 (349)
T TIGR01364 192 LTVVIVRKDLLGRASRITPSMLNYKIHAENDSMYNTPPTFAIYVSGLVFKWLKEQGGVKAIEKRNQAKAQLLYDTIDNS- 270 (349)
T ss_pred eEEEEECHHHHhhcccCCCCcchHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhC-
Confidence 89999999988765431000 00 0012233 44555677777899988765 3 4555666777777777665
Q ss_pred CCCcee-e-ee--cee-EEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecC---CEEEEeCCcccCHHHHHHHHHhh
Q psy8199 570 THPKII-N-FR--QKG-MIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG---NTVYLMPPYILNKNEIQHMTSAI 641 (965)
Q Consensus 570 ~~~~i~-~-v~--g~G-~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~---~~lR~~p~~~~t~~~i~~~~~~l 641 (965)
+++. . .. .+. ....|.+. + ......+...+.++|+++.+.. +.+|+++....+.++++.+++++
T Consensus 271 --~gl~~~~~~~~~rs~~v~sf~~~--~----~~~~~~~~~~~~~~Gi~~~~~~~~~g~vRvS~~~~nt~edid~l~~al 342 (349)
T TIGR01364 271 --NGFYRNPVDPRNRSRMNVVFTLG--N----EELEKRFLKEAEERGLVSLKGHRSVGGMRASIYNAMPLEGVQALVDFM 342 (349)
T ss_pred --CCeeccCCCHHHcCCeEEEEecC--C----hhHhHHHHHHHHHCCCcccCCccccCeeEEECcCCCCHHHHHHHHHHH
Confidence 2221 1 11 122 44555543 1 1223456678889999666542 68999999999999999999988
Q ss_pred hc
Q psy8199 642 FQ 643 (965)
Q Consensus 642 ~~ 643 (965)
++
T Consensus 343 ~~ 344 (349)
T TIGR01364 343 KE 344 (349)
T ss_pred HH
Confidence 75
|
This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266). |
| >COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.6e-09 Score=111.08 Aligned_cols=194 Identities=18% Similarity=0.249 Sum_probs=139.8
Q ss_pred cCCCCCCCCCCCCCCcCCC-CcccccCCCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHhcCcEeE
Q psy8199 689 TGGCTEDCGYCPQSTHYNT-EITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETC 767 (965)
Q Consensus 689 s~~C~~~C~fC~~~~~~~~-~~~~~~~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~~~~i~ 767 (965)
+.||+++|.||..+..... .....+..+++++.+.+. ...+...|.+++|+ |. .-.+.+.++++..|+.|+.++
T Consensus 42 ~~GCnlrC~~C~N~~~~~~~~~~~~~~~~~e~l~~~~~--~~~~~~gvt~SGGE-P~--~q~e~~~~~~~~ake~Gl~~~ 116 (260)
T COG1180 42 LQGCNLRCPYCQNPEISQRGREVSGEEVSPEVLVDKAF--YSESGGGVTFSGGE-PT--LQAEFALDLLRAAKERGLHVA 116 (260)
T ss_pred eCCCCCCCCCCCChhHhcccccCchhhcCHHHHHHHhh--hcCCCCEEEEECCc-ch--hhHHHHHHHHHHHHHCCCcEE
Confidence 7999999999987765431 112223344444444332 23367889998775 43 347899999999999999987
Q ss_pred E-ecCCCCHHHHHHHHHhCCCeEeccCCC-CHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEE--ecCCCHHHHHH
Q psy8199 768 L-TLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGII--GLSESRDQRAE 843 (965)
Q Consensus 768 ~-~~~~~~~e~l~~Lk~aG~~~i~i~~es-~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~--Gl~et~ed~~~ 843 (965)
+ ++|..+++.++.|.+. +|.+.+.+-. +++.|+++..... +..++.++.+.+.|+.+....++ |..++.+++.+
T Consensus 117 l~TnG~~~~~~~~~l~~~-~D~v~~DlK~~~~~~y~~~tg~~~-~~vl~~~~~l~~~g~~ve~r~lviPg~~d~~e~i~~ 194 (260)
T COG1180 117 LDTNGFLPPEALEELLPL-LDAVLLDLKAFDDELYRKLTGADN-EPVLENLELLADLGVHVEIRTLVIPGYNDDEEEIRE 194 (260)
T ss_pred EEcCCCCCHHHHHHHHhh-cCeEEEeeccCChHHHHHHhCCCc-HHHHHHHHHHHcCCCeEEEEEEEECCCCCCHHHHHH
Confidence 7 7899999999999998 8999999999 8888999986555 99999999999999977655554 44588999999
Q ss_pred HHHHHHhcCCCCCceeeccccccCCCCCCCCCCCCHHHHHHHHHHHHHH
Q psy8199 844 LIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARIT 892 (965)
Q Consensus 844 ~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~~~~~~~~~~~~~ia~~R~~ 892 (965)
.++++.++.. ..-+.+.+|.| .-.+...++....++-++...++..
T Consensus 195 i~~~i~~~~~-~~p~~~l~fhp--~~~~~~~p~~~~~~le~~~~~a~~~ 240 (260)
T COG1180 195 LAEFIADLGP-EIPIHLLRFHP--DYKLKDLPPTPVETLEEAKKLAKEE 240 (260)
T ss_pred HHHHHHhcCC-cccEEEecccc--CccccccCCCcHHHHHHhHhhhHHH
Confidence 9999998651 33444555544 3334444544555555556665554
|
|
| >TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.5e-09 Score=118.21 Aligned_cols=301 Identities=12% Similarity=0.109 Sum_probs=167.9
Q ss_pred CcHHHHHHHHHHHhhcCCC-CCeEEEcCChh-HHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCc
Q psy8199 295 THKPVIKLSEKLSSLTQYK-LGHCFYGSDGA-SAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSF 372 (965)
Q Consensus 295 ~~~~~~~la~~l~~~~~~~-~~~v~~~~sGs-eA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~ 372 (965)
......++.+.+++.++.. ...++++++|| .|+..++..++.. + ++.+.||+..-+ |-++.-+....|-
T Consensus 103 ~~~l~~~~e~~~~~~~G~~~~~~a~~v~~~Tg~al~laL~alr~~----~-~~gd~VI~p~~t-h~S~~kAi~~~G~--- 173 (444)
T TIGR03531 103 LYKLTNKLVKDFLKLLGLRSIKSAFVVPLATGMSLSLCLSALRHK----R-PKAKYVIWPRID-QKSCIKAISTAGF--- 173 (444)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCEEEEECCHHHHHHHHHHHHcCCc----C-CCCCEEEEECcC-hHHHHHHHHHcCC---
Confidence 3455667778888888632 23799999999 6888887766431 1 134667777665 5555555444441
Q ss_pred cchhcccCCCeeEecC--CCCCCCCCCCChhHHHHHHHHHHHHHHHhCC-CcEEEEEEccccccCCCcccCChHHHHHHH
Q psy8199 373 KEIYTSLLNKTYIITT--PDSRNINKGNSANEIARCAIFDLEILLKKNH-NKIAAIIIEPLVQCAGGMIMYDSIYLKLVR 449 (965)
Q Consensus 373 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~-~~~aaii~ep~v~~~~G~~~~~~~~l~~l~ 449 (965)
..++++. .+.... -|+++|+++|.+.. ..+.+|+..| ..+.+|...+ +++|.
T Consensus 174 ---------~pv~Vd~~~d~~~~~-----------iD~e~Le~aIt~~~~kai~~Vv~Tp-~t~~~g~~dd----L~eIa 228 (444)
T TIGR03531 174 ---------EPRVIETVLDGDELT-----------TDVEDIERAIEEIGPDNILCVLSTT-SCFAPRSPDD----IEEIA 228 (444)
T ss_pred ---------eEEEeeeeecCcCCC-----------cCHHHHHHHHHhccCCCEEEEEEcC-CcCCCcchhC----HHHHH
Confidence 2233331 111111 37899999998543 5677777777 3333333333 99999
Q ss_pred HHHHhcCCeEEEeccccCCCcccccccc--cccCC-Ccceeee--ccccCCCcccceeeee-cHHHHHhhhccCCccccc
Q psy8199 450 EICNNYNIHLIADEIAVGCGRTGKFFAC--EHAEI-WPDFLCL--SKGITGGYLPLSLVMT-TDKIYNSIYYKNNINIFL 523 (965)
Q Consensus 450 ~l~~~~g~llI~DEv~tg~gr~G~~~~~--~~~~~-~pDivt~--sK~l~gG~~pig~v~~-~~~i~~~~~~~~~~~~~~ 523 (965)
++|++||+++|+|++|. ++.. ..... ..... ..|++++ .|.+...++ -|+++. ++++++.+... .
T Consensus 229 ~la~k~gI~lIvDaAyg-~~~~-~~~~~~~~g~~~Grad~vv~s~hK~l~~pg~-Gg~I~~~d~el~~~i~~~------y 299 (444)
T TIGR03531 229 KICANYDIPHIVNNAYG-LQSN-KYMELINKAIKVGRVDAVVSSTDKNFMVPVG-GAIIYSFDENFIQEISKS------Y 299 (444)
T ss_pred HHHHHcCCEEEEECcCc-CcCh-hhhhhhhccccccCCCeEEEeCccCCCCCCC-EEEEEECCHHHHHHHHHh------c
Confidence 99999999999999996 3211 00000 11112 3577765 586653212 244546 57777776541 1
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHccc-CCCc-eeeeeceeEEEEEEEeecCccchhhH
Q psy8199 524 HSHSYSGNPLACCAALATLEIFNK--DNILQRISQDMKKITKALTSLI-THPK-IINFRQKGMIWAFDVIIEDPEQIETF 599 (965)
Q Consensus 524 ~~~t~~~~~~~~aaa~a~L~~~~~--~~~~~~~~~~~~~l~~~L~~l~-~~~~-i~~v~g~G~~~~i~~~~~~~~~~~~~ 599 (965)
.+ .. .+..++.+..+.+..-.+ .++.++..++.+++.+.|+++. ++.. +-.++..-.-+++.+..-. ...
T Consensus 300 ~g-~~-~~s~~~~~~~~ll~~G~~g~~~li~~~~~~a~~l~~~L~~l~~~~~~~~~~~~~n~is~~~~~~~~~----~~~ 373 (444)
T TIGR03531 300 PG-RA-SASPSLDVLITLLSLGSKGYLELLKERKEMYKYLKELLQKLAERHGERLLDTPENPISSAMTLSTLK----GKD 373 (444)
T ss_pred cC-CC-CChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcEeecCCCCceeEEEeccccc----ccC
Confidence 11 21 223445555454433221 3456667778888888888873 3321 2222222223333332100 111
Q ss_pred HHHHHHHHHHcCcE----EeecC---------------------CEEEEeCCcccCHHHHHHHHHhhhcc
Q psy8199 600 SKKFFVAALKNELL----LRPIG---------------------NTVYLMPPYILNKNEIQHMTSAIFQT 644 (965)
Q Consensus 600 ~~~~~~~l~~~Gi~----~~~~~---------------------~~lR~~p~~~~t~~~i~~~~~~l~~~ 644 (965)
...+...|..++|- +.++. ..+-++.++.++.+|++.++++++++
T Consensus 374 ~~~~g~~l~~~~v~g~r~v~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~~~~~~~~~l~~~ 443 (444)
T TIGR03531 374 PTMLGSMLYSRRVTGPRVVTNGDSKTVGGCEFKGYGSHTSNYPCPYITAAAAIGMTKEDVDTFVSRLEKS 443 (444)
T ss_pred HHHHHHHHHhCCCCCceeecCCCceEECCEEeecccccccCCCchhHHHHHHhCCcHHHHHHHHHHHhhc
Confidence 33456667667662 11210 13444455667899999999988764
|
In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein. |
| >TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.2e-08 Score=115.70 Aligned_cols=314 Identities=14% Similarity=0.073 Sum_probs=168.0
Q ss_pred cHHHHHHHHHHHhhcCC-------------CCCeEEEcCChhHHHHHHHHHHHHHHHhc-CC---------C-------C
Q psy8199 296 HKPVIKLSEKLSSLTQY-------------KLGHCFYGSDGASAVEVALKMSFHYWYNK-GF---------L-------N 345 (965)
Q Consensus 296 ~~~~~~la~~l~~~~~~-------------~~~~v~~~~sGseA~~~Al~~a~~~~~~~-g~---------~-------~ 345 (965)
++....+.+.++++++. +...-.|++|||+||..|+.+||...... |. . .
T Consensus 128 t~lE~~v~~wl~~l~~~~~~~~~~~~~~~~~~~~G~~tsGGS~ANl~Al~~AR~~~~~~~~~~~~~~~~gl~~~~~~~~~ 207 (522)
T TIGR03799 128 TPLERQVLGMMHHLVYGQDDDFYRKWMHSADHSLGAFCSGGTVANITALWVARNRLLKADGDFKGVAREGLFAALKHYGY 207 (522)
T ss_pred HHHHHHHHHHHHHHhccCcccchhhcccCCCCCCeEEcCchHHHHHHHHHHHHHHhccccccccccccccchhhhhhccC
Confidence 44455566666666521 01235789999999999999999863211 00 0 0
Q ss_pred ceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHh---CCCcE
Q psy8199 346 KKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKK---NHNKI 422 (965)
Q Consensus 346 ~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~---~~~~~ 422 (965)
...+|+....-|-+..-+....|. ....+..+|.... +. -|+++|+++|++ .+..+
T Consensus 208 ~~~~v~~S~~~H~S~~kaa~~lgl---------g~~~v~~vp~d~~-g~-----------~d~~~L~~~i~~~~~~g~~~ 266 (522)
T TIGR03799 208 DGLAILVSERGHYSLGKAADVLGI---------GRDNLIAIKTDAN-NR-----------IDVDALRDKCAELAEQNIKP 266 (522)
T ss_pred CceEEEECCCchHHHHHHHHHcCC---------CcccEEEEEeCCC-Cc-----------CCHHHHHHHHHHHHHCCCCc
Confidence 122333333445443222111110 0113455665322 11 378888888863 23344
Q ss_pred EEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCC-Ccceeeec--cccCCCccc
Q psy8199 423 AAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEI-WPDFLCLS--KGITGGYLP 499 (965)
Q Consensus 423 aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~-~pDivt~s--K~l~gG~~p 499 (965)
.+|+... ...++|.+.| +++|.++|++||+++++|-+|.|....-..+.....|+ ..|.++++ |.+.+. +.
T Consensus 267 ~~vvata-Gtt~tGaiDp----l~eIa~i~~~~g~~lHVDaA~gg~~~~~~~~r~~l~gle~aDSit~d~HK~l~~P-~g 340 (522)
T TIGR03799 267 LAIVGVA-GTTETGNIDP----LDEMADIAQELGCHFHVDAAWGGATLLSNTYRHLLKGIERADSVTIDAHKQLYVP-MG 340 (522)
T ss_pred EEEEEEe-cCcCCCCcCC----HHHHHHHHHHcCCeEEEEchhhhHHHhCHHHHHHhcCchhCCEEEEChhhcCCcC-cc
Confidence 5555444 3557899998 99999999999999999999975421111011112355 68999998 555443 67
Q ss_pred ceeeeecH-HHHHhhhccCC------cccccccCCCCCCHHH-HHHHHHHHHHHhcc---cHHHHHHHHHHHHHHHHHcc
Q psy8199 500 LSLVMTTD-KIYNSIYYKNN------INIFLHSHSYSGNPLA-CCAALATLEIFNKD---NILQRISQDMKKITKALTSL 568 (965)
Q Consensus 500 ig~v~~~~-~i~~~~~~~~~------~~~~~~~~t~~~~~~~-~aaa~a~L~~~~~~---~~~~~~~~~~~~l~~~L~~l 568 (965)
.|+++.++ +..+.+..... ...+. ..++.+..-+ .....++|+.+... .+.++..++.++|.+.|++.
T Consensus 341 ~G~llvr~~~~~~~~~~~~~Yl~~~~~~d~~-~~~legsR~~~al~lw~aL~~lG~~G~~~ii~~~~~la~~l~~~L~~~ 419 (522)
T TIGR03799 341 AGMVLFKDPALMSAIEHHAEYILRKGSKDLG-SHTLEGSRPGMAMLVYAGLHIIGRKGYELLIDQSIEKAKYFADLIQQQ 419 (522)
T ss_pred cEEEEEeCHHHHHHhccCcchhcCCCCCccc-cceeecCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 88888764 45454432100 00000 0122222112 22355667666543 35566666777777777554
Q ss_pred cCCCceeeee-ceeEEEEEEEeecCc----------------cchhhHHHHHHHHHHHcCcEEee-c--------C---C
Q psy8199 569 ITHPKIINFR-QKGMIWAFDVIIEDP----------------EQIETFSKKFFVAALKNELLLRP-I--------G---N 619 (965)
Q Consensus 569 ~~~~~i~~v~-g~G~~~~i~~~~~~~----------------~~~~~~~~~~~~~l~~~Gi~~~~-~--------~---~ 619 (965)
|.+..+. +.-.++.|.+...+. .........+.+++.+.|..... . + .
T Consensus 420 ---~~~el~~~p~l~iv~Fr~~p~~~~~~l~~~~~~~~~~~~~~~~~ln~~i~~~~~~~G~~~vs~t~l~~~~~~g~~~~ 496 (522)
T TIGR03799 420 ---PDFELVTEPELCLLTYRYVPEEVQQALAKADEEQREKINELLDRLTKFIQKRQREAGKSFVSRTRLTPAQYDHQPTV 496 (522)
T ss_pred ---CCeEEecCCCccEEEEEEeChhhcccccccchhhhhhHHHHHHHHHHHHHHHHHhcCCEEEEEEEecccccCCCCcE
Confidence 4444222 223344444431110 00112334677788888865432 1 1 2
Q ss_pred EEEEeC-CcccCHHHHHHHHHh
Q psy8199 620 TVYLMP-PYILNKNEIQHMTSA 640 (965)
Q Consensus 620 ~lR~~p-~~~~t~~~i~~~~~~ 640 (965)
.+|++. ....+.++++.+++.
T Consensus 497 ~lR~~~~np~tt~~~i~~~l~~ 518 (522)
T TIGR03799 497 VFRVVLANPLTTHEILQDILDE 518 (522)
T ss_pred EEEEEecCCCCCHHHHHHHHHH
Confidence 588864 334677778876653
|
This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent). |
| >PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases | Back alignment and domain information |
|---|
Probab=99.14 E-value=6.5e-11 Score=126.42 Aligned_cols=251 Identities=16% Similarity=0.189 Sum_probs=142.9
Q ss_pred CCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEE
Q psy8199 271 SNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFI 350 (965)
Q Consensus 271 ~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi 350 (965)
.+|++.+|+.++ ... . ...+..+...++.+++++++ +.+.++|++||+.||..|++...+ +.+.||
T Consensus 7 ~~~~m~~a~~~a-~~g-d--~~Yg~D~~~~~l~~~i~~l~--g~e~a~f~~sGT~An~~al~~~~~--------~~~~vi 72 (290)
T PF01212_consen 7 PTPAMLEAMAAA-NVG-D--DAYGEDPTTARLEERIAELF--GKEAALFVPSGTMANQLALRAHLR--------PGESVI 72 (290)
T ss_dssp S-HHEEHHHHHT-TSB----CCTTSSHHHHHHHHHHHHHH--TSSEEEEESSHHHHHHHHHHHHHH--------TTEEEE
T ss_pred CCHHHHHHHHcc-ccC-C--cccCCChhHHHHHHHHHHHc--CCCEEEEeCCCChHHHHHHHHHHh--------cCCcee
Confidence 579999999433 322 1 13567888899999999999 578889999999999999998864 456666
Q ss_pred EEcCCccCCc--cccccccCCcCccchhcccCCCeeEecCCCCC-CCCCCCChhHHHHHHHHHHHHHHHh---CCCcEEE
Q psy8199 351 CLQNSYHGET--LGALAVTNIQSFKEIYTSLLNKTYIITTPDSR-NINKGNSANEIARCAIFDLEILLKK---NHNKIAA 424 (965)
Q Consensus 351 ~~~~~yHg~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~le~~l~~---~~~~~aa 424 (965)
+-+. .|... .++.. ...+...++.+... +. .++++|++.+.+ +..++++
T Consensus 73 ~~~~-aHi~~~E~ga~~-------------~~~G~~~~~l~~~~~G~-----------l~~~~l~~~~~~~~~h~~~~~~ 127 (290)
T PF01212_consen 73 CADT-AHIHFDETGAIE-------------ELSGAKLIPLPSDDDGK-----------LTPEDLEAAIEEHGAHHPQPAV 127 (290)
T ss_dssp EETT-EHHHHSSTTHHH-------------HHTTCEEEEEBECTGTB-----------B-HHHHHHHHHHHTGTSGGEEE
T ss_pred cccc-ceeeeeccchhh-------------HhcCcEEEECCCcccCC-----------CCHHHHHHHhhhccccCCCccE
Confidence 6654 34432 12110 01233333333222 22 378999999877 3467899
Q ss_pred EEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccC--CCcccccccccccCCCcceeeeccccCCCccccee
Q psy8199 425 IIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVG--CGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSL 502 (965)
Q Consensus 425 ii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg--~gr~G~~~~~~~~~~~pDivt~sK~l~gG~~pig~ 502 (965)
|.+|. ..+..|..+++.+.+++|.++|++||+.|++|-+.-. ....|. ....+.-.-|+++||=.-++| .|.|+
T Consensus 128 v~le~-t~~~~GG~~~s~~el~ai~~~a~~~gl~lhmDGARl~~a~~~~~~--~~~e~~~~~D~v~~~~tK~~g-~~~Ga 203 (290)
T PF01212_consen 128 VSLEN-TTELAGGTVYSLEELRAISELAREHGLPLHMDGARLANAAAALGV--SLAEIAAGADSVSFGGTKNGG-APGGA 203 (290)
T ss_dssp EEEES-SBTTTTSB---HHHHHHHHHHHHHHT-EEEEEETTHHHHHCHHHH--HHHHHHTTSSEEEEETTSTT--SSSEE
T ss_pred EEEEe-cCcCCCCeeCCHHHHHHHHHHHHhCceEEEEehhhHHHhhhcccc--cHHHHhhhCCEEEEEEEcccc-cccce
Confidence 99998 6676666677899999999999999999999965310 000011 111111236888765333333 46665
Q ss_pred e-eecHHHHHhhhccCCcccccccCCCCCCHHHHH-H--HHHHHHHHhc-ccHHHHHHHHHHHHHHHHHcc
Q psy8199 503 V-MTTDKIYNSIYYKNNINIFLHSHSYSGNPLACC-A--ALATLEIFNK-DNILQRISQDMKKITKALTSL 568 (965)
Q Consensus 503 v-~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~a-a--a~a~L~~~~~-~~~~~~~~~~~~~l~~~L~~l 568 (965)
+ ++++++++....- .. ..++.+....+-++ . ..+++..++. .....+..++.++|.+.|+.+
T Consensus 204 vl~~~~~~i~~~~~~---~k-~~gg~~~~~G~~~a~~~~~~~~l~~l~~~~~~~~~~~~~A~~La~~l~~~ 270 (290)
T PF01212_consen 204 VLAGNKEFIAKARRQ---RK-RLGGGMRQAGVLAAAELYQFAALRALELWLERARHANAMAKRLAAGLEAL 270 (290)
T ss_dssp EEEESHHHHHHHHHH---HH-HHTHHHHHTTHHHHHHHHHHHHHCHEECSHHHHHCHHHHHHCHHHCHHEE
T ss_pred EEEechHHHHHHHHH---HH-HhccCeeecceeeeechhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHC
Confidence 4 4677755433220 00 11211111111112 0 0122222222 234566677788888888765
|
It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B .... |
| >TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.3e-09 Score=116.60 Aligned_cols=195 Identities=13% Similarity=0.123 Sum_probs=139.9
Q ss_pred EeEeeccCCCCCCCCCCCCCCcCCCCcccccCCCHHHHHHHHHHHHHC-CCCEEEEeeccCCCCccc--HHHHHHHHHHH
Q psy8199 683 VLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSD-GATRFCMGAAWRELKDRD--LDNIENMICEV 759 (965)
Q Consensus 683 ~~i~~~s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~-g~~~i~l~~g~~~~~~~~--~~~~~~~~~~i 759 (965)
.++.+ |+.|+.+|+||...+..+. ....++.+++.+.+.++.+. ++++|.|+||+ |+...+ ++.+++.++.+
T Consensus 110 vLl~v-T~~C~~~CryC~R~~~~g~---~~~~ls~eei~~~i~yI~~~p~I~~VlLSGGD-PLll~d~~L~~iL~~L~~I 184 (417)
T TIGR03820 110 VLFLV-SNTCAMYCRHCTRKRKVGD---RDSIPSKEQILEGIEYIRNTPQIRDVLLSGGD-PLLLSDDYLDWILTELRAI 184 (417)
T ss_pred EEEEE-cCCcCCCCcCCCCcccCCc---ccccCCHHHHHHHHHHHHhcCCCCEEEEeCCc-cccCChHHHHHHHHHHhhc
Confidence 34455 9999999999975542221 22347889999988888875 89999997775 544322 34444444433
Q ss_pred Hhc-CcEeEEe-----cCCCCHHHHHHHHHhCCCeEeccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCcee--eeEE
Q psy8199 760 KKI-GLETCLT-----LGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINIC--CGGI 831 (965)
Q Consensus 760 ~~~-~~~i~~~-----~~~~~~e~l~~Lk~aG~~~i~i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~--~~~i 831 (965)
... .+.+.++ +..++++.++.|++.+...+.+.++..+++ .++..++++.++++|+.+. +.++
T Consensus 185 phV~~IRI~TR~pvv~P~RIT~ell~~Lk~~~~~~v~~h~nhp~Ei---------t~~a~~Al~~L~~aGI~l~nQsVLL 255 (417)
T TIGR03820 185 PHVEVIRIGTRVPVVLPQRITDELVAILKKHHPVWLNTHFNHPREI---------TASSKKALAKLADAGIPLGNQSVLL 255 (417)
T ss_pred CCCceEEEeeccccccccccCHHHHHHHHhcCCeEEEEeCCChHhC---------hHHHHHHHHHHHHcCCEEEeeceEE
Confidence 221 2445554 557799999999999976776666664443 5889999999999999765 5667
Q ss_pred EecCCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
Q psy8199 832 IGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTS 896 (965)
Q Consensus 832 ~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~ 896 (965)
=|.+++.+-+.++.+.+.+++ +.-..++..-|.+|+.- -..+.++.++++..+|-.++..
T Consensus 256 kGVND~~~~l~~L~~~L~~~g--V~PYYl~~~d~v~G~~h---Frv~~~~g~~I~~~lr~~~sG~ 315 (417)
T TIGR03820 256 AGVNDCPRIMKKLVHKLVANR--VRPYYLYQCDLSEGLSH---FRTPVGKGIEIIESLIGHTSGF 315 (417)
T ss_pred CCcCCCHHHHHHHHHHHHHCC--CeeceeeeccCCCCccc---ccCcHHHHHHHHHHHHHhCCCC
Confidence 777899999999999999998 44444455566677643 3468899999999999988654
|
This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region. |
| >PLN02880 tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.1e-08 Score=118.02 Aligned_cols=317 Identities=11% Similarity=0.056 Sum_probs=181.8
Q ss_pred CcHHHHHHHHHHHhhcCCCC-------CeEEEcCChhHHHHHHHHHHHHHHH-hcCCCCc-eEEEEEcCCccCCcccccc
Q psy8199 295 THKPVIKLSEKLSSLTQYKL-------GHCFYGSDGASAVEVALKMSFHYWY-NKGFLNK-KKFICLQNSYHGETLGALA 365 (965)
Q Consensus 295 ~~~~~~~la~~l~~~~~~~~-------~~v~~~~sGseA~~~Al~~a~~~~~-~~g~~~~-~~vi~~~~~yHg~~~~~~~ 365 (965)
.+....++.+.++++++.+. ..-++++|||+||..|+.+||.... ..|..+. .-++.....-|-+..-+..
T Consensus 120 ~~~lE~~vi~wl~~l~g~p~~~~~~~~~gG~~tsggs~anl~al~~AR~~~~~~~g~~~~~~~vv~~S~~aH~Sv~Kaa~ 199 (490)
T PLN02880 120 ATELEMIVLDWLAKLLNLPEQFLSTGNGGGVIQGTASEAVLVVLLAARDRVLRKVGKNALEKLVVYASDQTHSALQKACQ 199 (490)
T ss_pred cHHHHHHHHHHHHHHhCCCchhhcCCCCceEEcCccHHHHHHHHHHHHHHHHHHhcccccCCeEEEEcCCchHHHHHHHH
Confidence 45566677788888885332 2367899999999999999998642 2232221 2234344444666443433
Q ss_pred ccCCcCccchhcccCCCeeEecCCCC-CCCCCCCChhHHHHHHHHHHHHHHHhC---CCcEEEEEEccccccCCCcccCC
Q psy8199 366 VTNIQSFKEIYTSLLNKTYIITTPDS-RNINKGNSANEIARCAIFDLEILLKKN---HNKIAAIIIEPLVQCAGGMIMYD 441 (965)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~~le~~l~~~---~~~~aaii~ep~v~~~~G~~~~~ 441 (965)
+.|-. ...+..+|.+.. .+. -|+++|+++|++. +....+|+..- -..++|.+-|
T Consensus 200 ~lGlg---------~~~v~~Vp~d~~~~~~-----------md~~~L~~~i~~~~~~g~~p~~vvata-GTT~~GaiDp- 257 (490)
T PLN02880 200 IAGIH---------PENCRLLKTDSSTNYA-----------LAPELLSEAISTDLSSGLIPFFLCATV-GTTSSTAVDP- 257 (490)
T ss_pred HcCCC---------HHHEEEeecCCCcCCc-----------CCHHHHHHHHHHHHHCCCccEEEEEec-CCCcCcccCc-
Confidence 33311 112455665421 112 3788888888642 33345555544 4556788887
Q ss_pred hHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCC-Ccceeeec--cccCCCcccceeeeecH--HHHHhhhcc
Q psy8199 442 SIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEI-WPDFLCLS--KGITGGYLPLSLVMTTD--KIYNSIYYK 516 (965)
Q Consensus 442 ~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~-~pDivt~s--K~l~gG~~pig~v~~~~--~i~~~~~~~ 516 (965)
+++|.++|++||+++++|-+|.|+...-..+-....|+ .+|.+++. |.+... ++.|+++.++ .+...+...
T Consensus 258 ---l~eI~~i~~~~~iwlHVDaA~gg~~~~~~~~~~~l~gie~aDSit~d~HKwl~~P-~~~g~llvr~~~~l~~~~~~~ 333 (490)
T PLN02880 258 ---LLELGKIAKSNGMWFHVDAAYAGSACICPEYRHYIDGVEEADSFNMNAHKWFLTN-FDCSLLWVKDRNALIQSLSTN 333 (490)
T ss_pred ---HHHHHHHHHHcCCEEEEehhhHHHHHhCHHHHHHhcCchhcCEEEECchhhcCCC-ccEEEEEEeCHHHHHHHHccC
Confidence 99999999999999999999876422211111123454 58888864 766554 5778888764 222333221
Q ss_pred CCccccc-c-----cCCC--------CCCHHHHHHHHHHHHHHhcccHHHHHH---HHHHHHHHHHHcccCCCceeee-e
Q psy8199 517 NNINIFL-H-----SHSY--------SGNPLACCAALATLEIFNKDNILQRIS---QDMKKITKALTSLITHPKIINF-R 578 (965)
Q Consensus 517 ~~~~~~~-~-----~~t~--------~~~~~~~aaa~a~L~~~~~~~~~~~~~---~~~~~l~~~L~~l~~~~~i~~v-~ 578 (965)
. .+. + ..++ .+-.........+|+.+-.+++.++++ ++.+++.+.|++. +.+..+ +
T Consensus 334 ~---~Yl~~~~~~~~~~~~~~~~~i~~~rr~~alklw~~l~~~G~~g~~~~i~~~~~lA~~~~~~l~~~---~~~el~~~ 407 (490)
T PLN02880 334 P---EFLKNKASQANSVVDYKDWQIPLGRRFRSLKLWMVLRLYGVENLQSYIRNHIKLAKEFEQLVAQD---SRFEVVTP 407 (490)
T ss_pred H---HHhcCccccccCCCChhccCcCCCCcccHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcC---CCEEEecC
Confidence 0 000 0 0000 112222233344566666667777777 7888887777654 444422 2
Q ss_pred ceeEEEEEEEeecCccc---hhhHHHHHHHHHHHcCcEE-ee----cCCEEEEeCCcccC-HHHHHHHHHhhhcc
Q psy8199 579 QKGMIWAFDVIIEDPEQ---IETFSKKFFVAALKNELLL-RP----IGNTVYLMPPYILN-KNEIQHMTSAIFQT 644 (965)
Q Consensus 579 g~G~~~~i~~~~~~~~~---~~~~~~~~~~~l~~~Gi~~-~~----~~~~lR~~p~~~~t-~~~i~~~~~~l~~~ 644 (965)
....++.|.+. ..... .......+.++|.+.|-+. .+ +..++|+++....+ .++++.+++.+.+.
T Consensus 408 ~~~~iv~Fr~~-~~~~~~~~~~~~n~~l~~~l~~~g~~~v~~t~~~g~~~lR~~~~n~~tt~~di~~~~~~i~~~ 481 (490)
T PLN02880 408 RIFSLVCFRLV-PPKNNEDNGNKLNHDLLDAVNSSGKIFISHTVLSGKYVLRFAVGAPLTEERHVTAAWKVLQDE 481 (490)
T ss_pred CceEEEEEEEe-CCCCChhhHHHHHHHHHHHHHhCCCEEEEEEEECCEEEEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 34446666654 11111 1223345677777776543 32 12579998755544 58999988887654
|
|
| >PRK14470 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=7e-09 Score=112.41 Aligned_cols=186 Identities=12% Similarity=0.122 Sum_probs=134.8
Q ss_pred cCCCCCCCCCCCCCCcCCCCcccccCCCHHHHHHHHHHHHHC---CCCEEEEeeccCCCCcccHHHHHHHHHHHHhc---
Q psy8199 689 TGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSD---GATRFCMGAAWRELKDRDLDNIENMICEVKKI--- 762 (965)
Q Consensus 689 s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~---g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~--- 762 (965)
..||+.+|.||...... -.+.++.+||++++....+. .++.+.|.|-+.|+.. .+.+.++++.+++.
T Consensus 104 q~GC~l~C~fC~tg~~g-----~~r~l~~~EI~~qi~~~~~~~~~~i~nIvfmGmGEPllN--~d~v~~~i~~l~~~~~~ 176 (336)
T PRK14470 104 QAGCALGCAFCATGKLG-----LDRSLRSWEIVAQLLAVRADSERPITGVVFMGQGEPFLN--YDEVLRAAYALCDPAGA 176 (336)
T ss_pred CCCcCCCCccccCCCCC-----CCCCCCHHHHHHHHHHHHHhcCCCCCEEEEEecCccccC--HHHHHHHHHHHhCcccc
Confidence 68999999999865421 12347899999988765442 5889999885567544 56777788777741
Q ss_pred ---CcEeEEe-cCCCCHHHHHHHHHhCC-CeEeccCCC-CHHHHhcccCC---CCHHHHHHHHHHHHHcCCcee--eeEE
Q psy8199 763 ---GLETCLT-LGMLNENQAYRLKKVGL-DYYNHNLDT-SPKLYGDIIST---RDYENRLNTLKNVRNVGINIC--CGGI 831 (965)
Q Consensus 763 ---~~~i~~~-~~~~~~e~l~~Lk~aG~-~~i~i~~es-~~~~~~~i~~~---~~~~~~~~~i~~~~~~Gi~v~--~~~i 831 (965)
+..++++ +|. .+ .+++|.+.|. +.+.+++.+ +++.++++.+. .+.++.+++++...+.+-+++ ..+|
T Consensus 177 ~~~~~~ItVsTnG~-~p-~i~~l~~~~~~~~LaiSLhA~~~e~r~~I~p~~~~~~le~il~ai~~~~~~~rri~ieyvLI 254 (336)
T PRK14470 177 RIDGRRISISTAGV-VP-MIRRYTAEGHKFRLCISLNAAIPWKRRALMPIEQGFPLDELVEAIREHAALRGRVTLEYVMI 254 (336)
T ss_pred ccCCCceEEEecCC-hH-HHHHHHhcCCCceEEEecCCCCHHHHHHhcCccccCCHHHHHHHHHHHHHhCCCeEEEEEEE
Confidence 3345543 344 34 4555666665 889999999 99999999763 578999999999888776544 5566
Q ss_pred EecCCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCCCCCCCHHHHHHHHHHHH
Q psy8199 832 IGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVAR 890 (965)
Q Consensus 832 ~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~~~~~~~~~~~~~ia~~R 890 (965)
-|..++.+|+.+..++++.+. ..+.+-+|.|.++ ...+++.+++.+...+.+
T Consensus 255 ~GvNDseeda~~La~llk~l~---~~vnlI~~N~~~~----~~~~p~~~~i~~f~~~l~ 306 (336)
T PRK14470 255 SGVNVGEEDAAALGRLLAGIP---VRLNPIAVNDATG----RYRPPDEDEWNAFRDALA 306 (336)
T ss_pred ecccCCHHHHHHHHHHHhcCC---CeEEEeccCCCCC----CccCCCHHHHHHHHHHHH
Confidence 677899999999999999885 4566666667555 345678888877777664
|
|
| >TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein | Back alignment and domain information |
|---|
Probab=99.13 E-value=2e-09 Score=116.90 Aligned_cols=192 Identities=17% Similarity=0.220 Sum_probs=134.9
Q ss_pred EeeccCCCCCCCCCCCCCCcCCCCcccccCCCHHHHHHHHHHHHHC-CCCEEEEeeccCCCCccc--HHHHHHHHHHHHh
Q psy8199 685 LSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSD-GATRFCMGAAWRELKDRD--LDNIENMICEVKK 761 (965)
Q Consensus 685 i~~~s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~-g~~~i~l~~g~~~~~~~~--~~~~~~~~~~i~~ 761 (965)
+.+ |.+|+.+|.||....... . +. .++.+++.+.+..+.+. +++.|.|+|| +|+...+ +..+++.++.+..
T Consensus 100 ~~~-t~~Cn~~Cr~C~~~~~~~-~--~~-~~~~~~~~~~i~~i~~~~~i~~VvltGG-EPL~~~d~~L~~ll~~l~~i~~ 173 (321)
T TIGR03821 100 LIV-TGGCAINCRYCFRRHFPY-Q--EN-QPNKAQWKEALEYIAQHPEINEVILSGG-DPLMAKDHRLDWLLNLLEQIPH 173 (321)
T ss_pred EEe-CCCcCCcCcCCCCCCcCC-C--CC-CCCHHHHHHHHHHHHhcCCCCEEEEeCc-ccccCCchHHHHHHHHHHhCCC
Confidence 335 999999999997543211 1 11 24556666656666644 8999999886 4655443 4455544444332
Q ss_pred -cCcEeE-----EecCCCCHHHHHHHHHhCCCeEe-ccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEE--E
Q psy8199 762 -IGLETC-----LTLGMLNENQAYRLKKVGLDYYN-HNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGI--I 832 (965)
Q Consensus 762 -~~~~i~-----~~~~~~~~e~l~~Lk~aG~~~i~-i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i--~ 832 (965)
..+.+. ..+..++++.++.|+++|...+. +.++..+++. +...++++.++++|+.+..... =
T Consensus 174 ~~~iri~tr~~~~~p~rit~el~~~L~~~~~~~~~~~h~dh~~Ei~---------d~~~~ai~~L~~~Gi~v~~qtvllk 244 (321)
T TIGR03821 174 LKRLRIHTRLPVVIPDRITSGLCDLLANSRLQTVLVVHINHANEID---------AEVADALAKLRNAGITLLNQSVLLR 244 (321)
T ss_pred CcEEEEecCcceeeHHHhhHHHHHHHHhcCCcEEEEeeCCChHhCc---------HHHHHHHHHHHHcCCEEEecceeeC
Confidence 122332 22346789999999999987774 4776654443 4578899999999997764444 4
Q ss_pred ecCCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
Q psy8199 833 GLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTS 896 (965)
Q Consensus 833 Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~ 896 (965)
|..++.+++.+..+.+.+++ +.-..++.+.|..|+. +-..+.++..+++..+|..++..
T Consensus 245 giNDn~~~l~~L~~~l~~~g--v~pyyl~~~~p~gg~~---~f~v~~~~~~~i~~~l~~~~sG~ 303 (321)
T TIGR03821 245 GVNDNADTLAALSERLFDAG--VLPYYLHLLDKVQGAA---HFDVDDERARALMAELLARLPGY 303 (321)
T ss_pred CCCCCHHHHHHHHHHHHHcC--CeeCcccccCCCCCcc---cccCCHHHHHHHHHHHHHhCCCC
Confidence 66789999999999999999 7777788888888865 24578899999999999888765
|
Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc. |
| >TIGR02618 tyr_phenol_ly tyrosine phenol-lyase | Back alignment and domain information |
|---|
Probab=99.12 E-value=8.9e-09 Score=113.95 Aligned_cols=344 Identities=12% Similarity=0.116 Sum_probs=183.0
Q ss_pred cccccccccchhccCCCCCHHHHHH-HHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHH
Q psy8199 254 KRYLDAISSWWVNLFGHSNSYINKA-LKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALK 332 (965)
Q Consensus 254 ~~ylD~~~~~~~~~lGh~~p~v~~a-v~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~ 332 (965)
..|||+.+-.+. +.+.++ +.. +..+. ....-++...+|.+.+++++ +.+++++++||+.|...+..
T Consensus 38 ~v~iDLltDsgT-------~aMs~~q~a~-~~~GD---e~yag~~s~~~lE~~va~~~--G~~~av~v~sGT~Al~ll~~ 104 (450)
T TIGR02618 38 DVYIDLLTDSGT-------NAMSDKQWAG-LMMGD---EAYAGSRNFYHLERTVRELY--GFKYVVPTHQGRGAENLLSQ 104 (450)
T ss_pred ceEEEcccCCCc-------HHHHHHHHHH-hhhcc---hhhcCCCcHHHHHHHHHHHH--CCCeEEEcCCHHHHHHHHHH
Confidence 478999887653 445444 222 22211 12334566789999999999 57899999999999876532
Q ss_pred HHHHHHHhcCCCCceEEEEEcCCccCCcccc-ccccCCcCccchhcccCCCeeEecCCCC--CCCCCCCChhHH-HHHHH
Q psy8199 333 MSFHYWYNKGFLNKKKFICLQNSYHGETLGA-LAVTNIQSFKEIYTSLLNKTYIITTPDS--RNINKGNSANEI-ARCAI 408 (965)
Q Consensus 333 ~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~d~ 408 (965)
+.. .+++.| .. .+|-.+..+ ....|. .++..+.. .... ..+.+ ...|+
T Consensus 105 l~l--------~pGDeV--ps-n~~f~Tt~ahIe~~Ga--------------v~vDi~~dea~~~~---~~~p~~GniD~ 156 (450)
T TIGR02618 105 IAI--------KPGDYV--PG-NMYFTTTRYHQEKNGA--------------TFVDIIIDEAHDAQ---LNIPFKGNVDL 156 (450)
T ss_pred hCC--------CCcCEE--CC-ceeHHHHHHHHHhCCe--------------EEEeeecccccccc---cCCCCCCCcCH
Confidence 221 234433 33 333222221 222221 11111000 0000 00000 11378
Q ss_pred HHHHHHHHhCC-CcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccc----cccCC-
Q psy8199 409 FDLEILLKKNH-NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFAC----EHAEI- 482 (965)
Q Consensus 409 ~~le~~l~~~~-~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~----~~~~~- 482 (965)
++|+++|.+.. ..++.|.++- ..|..|..+.+.+.+++++++|++||+.||.|-++. ||- + .|-- .+.+.
T Consensus 157 ~~Le~aI~~~~~~~~~lV~~e~-t~N~~GG~pvs~~~l~~I~elA~~~Gl~vi~DaAR~-~gN-A-~~I~~re~g~~~~~ 232 (450)
T TIGR02618 157 KKLQKLIDEVGADKIPYICLAV-TVNLAGGQPVSMANMREVRELCEAHGIKVFYDATRC-VEN-A-YFIKEREQGYEDKS 232 (450)
T ss_pred HHHHHHhccccCcccCceEEEE-ecccCCCeeCCHHHHHHHHHHHHHcCCEEEEEccch-hhC-h-hhhhcccccccCCC
Confidence 99999997532 2444555544 345444455678889999999999999999999875 421 0 1100 01111
Q ss_pred ----------CcceeeeccccCCCcccceeeee--cHHHHHhhhccCCcccccccCCCCCCH-HHHHHHHHHHHHHhccc
Q psy8199 483 ----------WPDFLCLSKGITGGYLPLSLVMT--TDKIYNSIYYKNNINIFLHSHSYSGNP-LACCAALATLEIFNKDN 549 (965)
Q Consensus 483 ----------~pDivt~sK~l~gG~~pig~v~~--~~~i~~~~~~~~~~~~~~~~~t~~~~~-~~~aaa~a~L~~~~~~~ 549 (965)
..|. +++|+.-.+..|+|.+++ ++++++..+.- ...+-..-||++=. -.+.|...+|+...+..
T Consensus 233 i~ei~~e~~~~aD~-~~~S~~Kd~~~~~GG~l~~~d~~l~~k~r~~--~~~~eG~~tyGgla~r~~~ala~gL~e~~~~~ 309 (450)
T TIGR02618 233 IAEILKEMMSYADG-CTMSGKKDCLVNIGGFLCMNDDEMFQSAKEL--VVVFEGMPSYGGLAGRDMEAMAIGIREAVDYE 309 (450)
T ss_pred HHHHHHHHhccCcE-EEEeeccCCCCCCceEEEeCCHHHHHHHHHH--hhhcCCccccCchhhhhHHHHHHHHHHhhhHH
Confidence 2455 444444222258887766 67787766541 00111112444422 23444444565544556
Q ss_pred HHHHHHHHHHHHHHHHHcccCCCceeeeeceeEEEEEEEeecCcc-chhhH-HHHHHH-HHHHcCcEEee----------
Q psy8199 550 ILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPE-QIETF-SKKFFV-AALKNELLLRP---------- 616 (965)
Q Consensus 550 ~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~-~~~~~-~~~~~~-~l~~~Gi~~~~---------- 616 (965)
..++.....++|.+.|.+. ..|.+ -+..|.++.++...--++ +...+ +..+.. ..++.||-..-
T Consensus 310 y~~~r~~~a~~La~~L~~~-Gvpv~--~p~ggh~V~vda~~~lph~~~~~~p~~al~~~ly~~~gir~~e~g~~~~~~~~ 386 (450)
T TIGR02618 310 YIEHRVKQVRYLGDKLKAA-GVPIV--EPVGGHAVFLDARRFLPHIPQDQFPAQSLAASIYVETGVRSMERGIVSAGRNN 386 (450)
T ss_pred HHHHHHHHHHHHHHHHHHC-CCccc--CCCCcceEEEEhHHhCCCCChhhChHHHHHHHHHHHhCccEEeecceecccCC
Confidence 6777777889999999876 33322 234566666665310011 11111 223333 33466764321
Q ss_pred c--------CCEEEEeCCc-ccCHHHHHHHHHhhhcccccH
Q psy8199 617 I--------GNTVYLMPPY-ILNKNEIQHMTSAIFQTFNEL 648 (965)
Q Consensus 617 ~--------~~~lR~~p~~-~~t~~~i~~~~~~l~~~~~~~ 648 (965)
. -..+|++.|. +.|.++++.+.+++.......
T Consensus 387 ~~~~~~~~~~el~rlaiprr~yt~~h~~~v~~~~~~~~~~~ 427 (450)
T TIGR02618 387 VTGEHHRPKLELVRLTIPRRVYTYAHMDVVADGIIKLYKHR 427 (450)
T ss_pred CCCcccCCccceeeeccccccccHhHHHHHHHHHHHHHhhH
Confidence 1 1468887665 558888888888877654443
|
This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212) |
| >PLN02263 serine decarboxylase | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.4e-08 Score=110.85 Aligned_cols=290 Identities=12% Similarity=0.040 Sum_probs=170.6
Q ss_pred CcHHHHHHHHHHHhhcCCCCC--eEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCc
Q psy8199 295 THKPVIKLSEKLSSLTQYKLG--HCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSF 372 (965)
Q Consensus 295 ~~~~~~~la~~l~~~~~~~~~--~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~ 372 (965)
..+...++.+.++++++.+.+ .-++++||||||..|+.+||++. + +.+++....-|-+..-+..+.|
T Consensus 131 s~~~E~~Vi~wla~L~g~p~~~~~G~vtsGGTEaNL~Al~aARe~~------~-~~vvy~S~~aH~Sv~KAa~llg---- 199 (470)
T PLN02263 131 SRQFEVGVLDWFARLWEIEKNEYWGYITNCGTEGNLHGILVGREVF------P-DGILYASRESHYSVFKAARMYR---- 199 (470)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCeEEEeCcHHHHHHHHHHHHHhhc------C-CcEEEEcCCccHHHHHHHHhcC----
Confidence 445566788888888864332 36889999999999999999863 2 2355555555555333322222
Q ss_pred cchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHH
Q psy8199 373 KEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREIC 452 (965)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~ 452 (965)
-+...+|..... . -|+++|+++|.+......+|+..- ...+.|.+-| +++|.++|
T Consensus 200 --------i~~~~Vp~d~~g-~-----------mD~~aL~~aI~~d~~~P~iVvata-GTT~~GAiDp----i~eIa~i~ 254 (470)
T PLN02263 200 --------MECVKVDTLVSG-E-----------IDCADFKAKLLANKDKPAIINVNI-GTTVKGAVDD----LDLVIKTL 254 (470)
T ss_pred --------CcceEeccCCCC-c-----------CcHHHHHHHHHhCCCCcEEEEEEe-cCCCCcCCCC----HHHHHHHH
Confidence 234556653222 1 388999998876543445555544 4556788877 99999999
Q ss_pred HhcCC-----eEEEeccccCCCc----ccccccccccCCCcceeeec--cccCCCcccceeeeecHHHHHhhhccCCccc
Q psy8199 453 NNYNI-----HLIADEIAVGCGR----TGKFFACEHAEIWPDFLCLS--KGITGGYLPLSLVMTTDKIYNSIYYKNNINI 521 (965)
Q Consensus 453 ~~~g~-----llI~DEv~tg~gr----~G~~~~~~~~~~~pDivt~s--K~l~gG~~pig~v~~~~~i~~~~~~~~~~~~ 521 (965)
++||+ ++++|-++.|+-- .-..+. +....|-++++ |-++.. ++.|.++.+++..+.+.... .
T Consensus 255 ~~~g~~~~~iwlHVDAA~GG~~lPf~~~~~~~d---f~~~vDSIsvD~HK~l~~P-~~cgvll~R~~~~~~~~~~~---~ 327 (470)
T PLN02263 255 EECGFSQDRFYIHCDGALFGLMMPFVKRAPKVT---FKKPIGSVSVSGHKFVGCP-MPCGVQITRMEHINVLSSNV---E 327 (470)
T ss_pred HHcCCccCCeeEEEeccchhhHhhhcccccccC---CCcCccEEEECCccccCCC-cCEEEEEEehhhHhhhccCh---H
Confidence 99997 9999999987521 100111 11236777775 554444 68888999877655443210 0
Q ss_pred cc--ccCCCCCCH--HHHHHHHHHHHHHhcccHH---HHHHHHHHHHHHHHHcccCCCceeeeeceeEEEEEEEeecCcc
Q psy8199 522 FL--HSHSYSGNP--LACCAALATLEIFNKDNIL---QRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPE 594 (965)
Q Consensus 522 ~~--~~~t~~~~~--~~~aaa~a~L~~~~~~~~~---~~~~~~~~~l~~~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~ 594 (965)
+. ...|..+.- ...+..-++|+.+..+++. ++..++.+++.++|++. +...-..+..+.+.|... .
T Consensus 328 Yl~~~d~ti~gSR~g~~al~lW~~L~~~G~~G~~~~i~~~~~~A~~l~~~l~~~---g~~~~~~p~s~~V~f~~p--~-- 400 (470)
T PLN02263 328 YLASRDATIMGSRNGHAPIFLWYTLNRKGYRGFQKEVQKCLRNAHYLKDRLREA---GISAMLNELSSTVVFERP--K-- 400 (470)
T ss_pred hhCCCCCCcCCCCCcHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhC---CCeEEeCCCceEEEEecC--c--
Confidence 00 011222221 2234455666665555544 44445677777777665 221123344444444321 0
Q ss_pred chhhHHHHHHHHHHHcCcEEeecCCEEEEeCCcccCHHHHHHHHHhhhcc
Q psy8199 595 QIETFSKKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQT 644 (965)
Q Consensus 595 ~~~~~~~~~~~~l~~~Gi~~~~~~~~lR~~p~~~~t~~~i~~~~~~l~~~ 644 (965)
..+..+|..+...++.+++.....++.+.++++++.+.+.
T Consensus 401 ----------~~~~~~gW~L~~~~~~~Hivvmphv~~~~id~fi~DL~~~ 440 (470)
T PLN02263 401 ----------DEEFVRRWQLACQGNIAHVVVMPSVTIEKLDYFLKELVEK 440 (470)
T ss_pred ----------hHHhhcceEEccCCCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 1123467766665555666554446778888888776543
|
|
| >COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.6e-08 Score=106.56 Aligned_cols=239 Identities=15% Similarity=0.104 Sum_probs=150.4
Q ss_pred HHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEE
Q psy8199 273 SYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICL 352 (965)
Q Consensus 273 p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~ 352 (965)
.+..++|.+.++... .+ .-+...++.+.+++.+ +..+++.++|||.|+..|++++- . .+++.||+.
T Consensus 15 ~~e~~~v~~vl~sg~-i~----~G~~v~~FE~~~ae~~--G~k~ava~~sgT~AL~laL~al~-i------g~GDeVI~p 80 (374)
T COG0399 15 EEELAAVQEVLKSGW-LT----GGPFVRRFEQAFAEYL--GVKYAVAVSSGTAALHLALLALA-I------GPGDEVIVP 80 (374)
T ss_pred hHHHHHHHHHHHcCC-ee----cChHHHHHHHHHHHHh--CCCeEEEecChHHHHHHHHHhcC-C------CCCCEEEec
Confidence 455667777776642 11 2456778999999999 67899999999999999999552 1 467889998
Q ss_pred cCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccc
Q psy8199 353 QNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQ 432 (965)
Q Consensus 353 ~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~ 432 (965)
.-+|-......+..+.. .+|+........ .|.+.+|++|.+ ++.|||.-
T Consensus 81 s~TfvATan~i~~~Ga~-------------PVFvDid~~T~n-----------id~~~ie~aIt~---~tKAIipV---- 129 (374)
T COG0399 81 SFTFVATANAVLLVGAK-------------PVFVDIDPDTLN-----------IDPDLIEAAITP---RTKAIIPV---- 129 (374)
T ss_pred CCchHHHHHHHHHcCCe-------------EEEEecCCcccC-----------CCHHHHHHHccc---CCeEEEEe----
Confidence 87775553333333332 233332211111 378999999963 35665552
Q ss_pred cCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcceeeec----cccCCCcccceeeeec-H
Q psy8199 433 CAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS----KGITGGYLPLSLVMTT-D 507 (965)
Q Consensus 433 ~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~s----K~l~gG~~pig~v~~~-~ 507 (965)
+-.|.... +++|.++|++||++||-|-+|+ +|-+ +--...|---|+.+|| |.|+.| =-|+++.+ +
T Consensus 130 hl~G~~~d----m~~i~~la~~~~l~vIEDaAqa-~Ga~---y~gk~vGt~Gd~~~fSF~~~K~ittg--EGGav~tnd~ 199 (374)
T COG0399 130 HLAGQPCD----MDAIMALAKRHGLPVIEDAAQA-HGAT---YKGKKVGSFGDIGAFSFHATKNLTTG--EGGAVVTNDE 199 (374)
T ss_pred hhccCCCC----HHHHHHHHHHcCCeEEEEcchh-ccCe---ecCcccccccceEEEEecCCCCcccc--CceEEEeCCH
Confidence 22454444 8999999999999999999996 6533 1111223334677765 888654 23667765 4
Q ss_pred HHHHhhhc---cCCcc-------cccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcc
Q psy8199 508 KIYNSIYY---KNNIN-------IFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSL 568 (965)
Q Consensus 508 ~i~~~~~~---~~~~~-------~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l 568 (965)
++++.++. .|... ....|..+.-+-+.+|.+++-|+.++ ++.++-++..++..+.|+++
T Consensus 200 ela~k~~~lr~hG~~~~~~~~y~~~~~G~N~rm~~iqAAigl~QL~~l~--~~~~~R~~~a~~Y~~~l~~~ 268 (374)
T COG0399 200 ELAEKARSLRNHGLSRDAVFKYLHEELGYNYRLTEIQAAIGLAQLERLD--EINERRREIAQIYAEALKGL 268 (374)
T ss_pred HHHHHHHHHHHhCcCCCccccceeeecccccCHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhcC
Confidence 56554432 22211 12234444455666666667676553 46677777788888888766
|
|
| >TIGR00048 radical SAM enzyme, Cfr family | Back alignment and domain information |
|---|
Probab=99.11 E-value=8.3e-09 Score=113.24 Aligned_cols=188 Identities=13% Similarity=0.188 Sum_probs=136.1
Q ss_pred cCCCCCCCCCCCCCCcCCCCcccccCCCHHHHHHHHHHHHH------CCCCEEEEeeccCCCCcccHHHHHHHHHHHHh-
Q psy8199 689 TGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKS------DGATRFCMGAAWRELKDRDLDNIENMICEVKK- 761 (965)
Q Consensus 689 s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~------~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~- 761 (965)
..||+.+|.||..... + ..+.++.+||++++..... .+++.|.+.|.++|+.. ++.+.++++.+++
T Consensus 112 Q~GC~l~C~fC~t~~~---g--~~r~lt~~Eiv~qv~~~~~~~~~~~~~v~nVvfmGmGEPLln--~d~v~~~l~~l~~~ 184 (355)
T TIGR00048 112 QVGCALGCTFCATAKG---G--FNRNLEASEIIGQVLRVQKINNETGERVSNVVFMGMGEPLLN--LNEVVKAMEIMNDD 184 (355)
T ss_pred CCCCCCcCCCCCCCCC---C--CCCCCCHHHHHHHHHHHHHHhhhcCCCeeEEEEecCCchhhC--HHHHHHHHHHhhcc
Confidence 5789999999985432 1 1245899999998765432 24777889886677554 7788888888874
Q ss_pred cC--c---EeEE-ecCCCCHHHHHHHHHhCCC-eEeccCCC-CHHHHhcccC---CCCHHHHHHHHHH-HHHcCCcee--
Q psy8199 762 IG--L---ETCL-TLGMLNENQAYRLKKVGLD-YYNHNLDT-SPKLYGDIIS---TRDYENRLNTLKN-VRNVGINIC-- 827 (965)
Q Consensus 762 ~~--~---~i~~-~~~~~~~e~l~~Lk~aG~~-~i~i~~es-~~~~~~~i~~---~~~~~~~~~~i~~-~~~~Gi~v~-- 827 (965)
.+ + .+++ +.|.. ..++.|.+.+++ .+.+++.+ +++.++++.+ ..+.++.+++++. +++.|.+++
T Consensus 185 ~g~~i~~~~itisT~G~~--~~i~~l~~~~l~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~ll~~l~~~~~~~g~~Vtie 262 (355)
T TIGR00048 185 FGLGISKRRITISTSGVV--PKIDILADKMLQVALAISLHAPNDELRSSLMPINKKYNIETLLAAVRRYLNKTGRRVTFE 262 (355)
T ss_pred cccCcCCCeEEEECCCch--HHHHHHHHhCCCcEEEEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEE
Confidence 33 3 4555 34543 578888888887 57899999 8999999875 3468999988875 566787665
Q ss_pred eeEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCCCCCCCHHHHHHHHHHHHH
Q psy8199 828 CGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARI 891 (965)
Q Consensus 828 ~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~~~~~~~~~~~~~ia~~R~ 891 (965)
.-+|-|+.++.+++.+..++++.++ ..|.+.+|.|.++..+ .+++.+++.+...+++.
T Consensus 263 yvLI~GvNDs~e~a~~La~llk~l~---~~VnLIPynp~~~~~~---~~ps~e~i~~f~~~L~~ 320 (355)
T TIGR00048 263 YVLLDGVNDQVEHAEELAELLKGTK---CKVNLIPWNPFPEADY---ERPSNEQIDRFAKTLMS 320 (355)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCC---CceEEEecccCCCCCC---CCCCHHHHHHHHHHHHH
Confidence 4455566799999999999999986 4577777777766543 45677777776655543
|
A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains. |
| >PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=5.4e-09 Score=116.55 Aligned_cols=314 Identities=11% Similarity=0.036 Sum_probs=177.9
Q ss_pred CCHHHHHHHHHHHhhc-----cccccCCCCc---HHHHHHHHHHHhhcCC-CCCeE-EEcCChhHHHHHHHHHHHHHHHh
Q psy8199 271 SNSYINKALKNQLNKL-----EHVMLSNLTH---KPVIKLSEKLSSLTQY-KLGHC-FYGSDGASAVEVALKMSFHYWYN 340 (965)
Q Consensus 271 ~~p~v~~av~~~~~~~-----~~~~~~~~~~---~~~~~la~~l~~~~~~-~~~~v-~~~~sGseA~~~Al~~a~~~~~~ 340 (965)
.+++|++|+...+.+. +....+.... +...+..+.++++++. ...+| +++.||+.|+|+++.-...
T Consensus 14 ~p~~V~~a~~~~~~~~~~~~~g~~~~~hr~~~f~~~~~~~~~~l~~l~~~~~~~~v~~~~gsgt~~~Ea~~~nl~~---- 89 (360)
T PRK05355 14 LPEEVLEQAQQELLDWNGSGMSVMEISHRSKEFEAVAEEAEADLRELLNIPDNYKVLFLQGGASLQFAMVPMNLLG---- 89 (360)
T ss_pred CCHHHHHHHHHHhhccccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCCchHHHHHHHHhcCC----
Confidence 4789999998876432 1111112222 5667788888888863 22345 4568899999999875533
Q ss_pred cCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHH-HHHhCC
Q psy8199 341 KGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEI-LLKKNH 419 (965)
Q Consensus 341 ~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~-~l~~~~ 419 (965)
+++++++...+..|....-+. ...... ..+..+...+. .+..++++ .+++
T Consensus 90 ----~g~~~l~i~~G~fg~r~~~~a-----------~~~g~~-~~~~~~~~~g~-----------~~~~~~~~~~l~~-- 140 (360)
T PRK05355 90 ----GGKKADYVDTGSWSKKAIKEA-----------KKYGEV-NVAASSEDDGF-----------TYIPPLDEWQLSD-- 140 (360)
T ss_pred ----CCCeEEEEECCHHHHHHHHHH-----------HHhCCc-eEEecccccCC-----------CCCCChhhccCCC--
Confidence 345666665555554321111 001111 12222110110 12223333 4433
Q ss_pred CcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcceeeec--cccCCCc
Q psy8199 420 NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS--KGITGGY 497 (965)
Q Consensus 420 ~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~s--K~l~gG~ 497 (965)
++.+|.+-- .-+++|+..++ +++| ||+++|+|-|++ +|. .....+.+ |++++| |+++ .
T Consensus 141 -~~~~V~~th-~eTstGv~~~~---i~~i------~g~l~vVDavss-~g~--~~idv~~~----d~~~~ssqK~lg--P 200 (360)
T PRK05355 141 -DAAYVHYTS-NETIDGTEFHE---LPDT------GDVPLVADMSSD-ILS--RPIDVSKF----GLIYAGAQKNIG--P 200 (360)
T ss_pred -CCCEEEEcc-CCCcceEecCc---cccc------CCCcEEEEcCcc-ccC--ccCCHHHc----cEEEEecccccc--C
Confidence 233344433 34567877632 4443 899999999997 542 22333322 577776 7773 3
Q ss_pred ccceeeeecHHHHHhhhccCCc----cc-ccccCC-CCCCHHHHHHHHHHHHHHhcc-c---HHHHHHHHHHHHHHHHHc
Q psy8199 498 LPLSLVMTTDKIYNSIYYKNNI----NI-FLHSHS-YSGNPLACCAALATLEIFNKD-N---ILQRISQDMKKITKALTS 567 (965)
Q Consensus 498 ~pig~v~~~~~i~~~~~~~~~~----~~-~~~~~t-~~~~~~~~aaa~a~L~~~~~~-~---~~~~~~~~~~~l~~~L~~ 567 (965)
..+|.+++++++++.+....+. .. .....+ ++.|-....+..++|+.+.+. + +.++.+++.+++++.|++
T Consensus 201 ~Glg~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~aL~~aL~~i~~~gG~e~i~~r~~~l~~~l~~~l~~ 280 (360)
T PRK05355 201 AGLTIVIVREDLLGRALPSIPSMLDYKTHADNDSMYNTPPTFAIYLAGLVFKWLKEQGGVAAMEKRNQEKAALLYDAIDS 280 (360)
T ss_pred CceEEEEECHHHHhhcccCCChHHHHHHHHhcCCccCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHh
Confidence 4589999999988765431000 00 011112 334555777778899988765 3 556666777777777776
Q ss_pred ccCCCcee--eeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec---CCEEEEeCCcccCHHHHHHHHHhhh
Q psy8199 568 LITHPKII--NFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI---GNTVYLMPPYILNKNEIQHMTSAIF 642 (965)
Q Consensus 568 l~~~~~i~--~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~---~~~lR~~p~~~~t~~~i~~~~~~l~ 642 (965)
+.-...+. ..+ .+....|.+. +. .....+...+.++|+.+.+. .+.+|+++....+.+|++.+++.+.
T Consensus 281 ~~~~~~~~~~~~r-s~~v~sf~~~--~~----~~~~~~~~~~~~~Gi~~~~~~~~~g~vRiS~~~~nt~eei~~l~~~l~ 353 (360)
T PRK05355 281 SDFYRNPVAPEDR-SRMNVPFTLA--DE----ELDKKFLAEAKAAGLVGLKGHRSVGGMRASIYNAMPLEGVQALVDFMK 353 (360)
T ss_pred CCCcccCCChhhc-CCcEEEEEcC--Ch----HHHHHHHHHHHHCCCcccCCCCccCcEEEECCCCCCHHHHHHHHHHHH
Confidence 52100001 112 1244555543 21 12245667888999998554 2689999999999999999999887
Q ss_pred cc
Q psy8199 643 QT 644 (965)
Q Consensus 643 ~~ 644 (965)
+.
T Consensus 354 ~~ 355 (360)
T PRK05355 354 EF 355 (360)
T ss_pred HH
Confidence 64
|
|
| >PRK13745 anaerobic sulfatase-maturase; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=7.4e-09 Score=117.59 Aligned_cols=180 Identities=8% Similarity=0.110 Sum_probs=125.2
Q ss_pred eEeEeeccCCCCCCCCCCCCCCcCCC-CcccccCCCHHHHHHHHHHHHHC-CCCEE--EEeeccCCCCccc--HHHHHHH
Q psy8199 682 AVLLSIKTGGCTEDCGYCPQSTHYNT-EITATKILSIESVITAAQKAKSD-GATRF--CMGAAWRELKDRD--LDNIENM 755 (965)
Q Consensus 682 ~~~i~~~s~~C~~~C~fC~~~~~~~~-~~~~~~~~~~eei~~~~~~~~~~-g~~~i--~l~~g~~~~~~~~--~~~~~~~ 755 (965)
...+..++..|+.+|.||........ .......++.+.+.+.++++.+. +...+ .++|| +|+.... +..++++
T Consensus 14 ~~~~kp~~~~CNl~C~yC~~~~~~~~~~~~~~~~ms~e~~~~~i~~~~~~~~~~~v~i~f~GG-EPlL~~~~~~~~~~~~ 92 (412)
T PRK13745 14 YIMLKPVGAVCNLACDYCYYLEKSKLYQENPKHVMSDELLEKFIKEYINSQTMPQVLFTWHGG-ETLMRPLSFYKKALEL 92 (412)
T ss_pred EEEEeecCCCcCCCCcccCCcCCCcccccCccCCCCHHHHHHHHHHHHHcCCCCeEEEEEEcc-ccCCCcHHHHHHHHHH
Confidence 34445435799999999986432110 00112348999999888887764 55554 44555 4655432 2334444
Q ss_pred HHHHH-hcCcE--eEEecCCCCHHHHHHHHHhCCCeEeccCCCCHHHHhcccC----CCCHHHHHHHHHHHHHcCCceee
Q psy8199 756 ICEVK-KIGLE--TCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIIS----TRDYENRLNTLKNVRNVGINICC 828 (965)
Q Consensus 756 ~~~i~-~~~~~--i~~~~~~~~~e~l~~Lk~aG~~~i~i~~es~~~~~~~i~~----~~~~~~~~~~i~~~~~~Gi~v~~ 828 (965)
++... ..++. +.+|...++++.++.|++.++ .+.+++|+.++++...++ ..++++.+++++.+++.|+.+.+
T Consensus 93 ~~~~~~~~~i~~~i~TNG~ll~~e~~~~l~~~~~-~v~ISlDG~~~~hD~~R~~~~g~gsf~~v~~~i~~l~~~gi~~~i 171 (412)
T PRK13745 93 QKKYARGRQIDNCIQTNGTLLTDEWCEFFRENNF-LVGVSIDGPQEFHDEYRKNKMGKPSFVKVMKGINLLKKHGVEWNA 171 (412)
T ss_pred HHHHcCCCceEEEEeecCEeCCHHHHHHHHHcCe-EEEEEecCCHHHhhhhcCCCCCCccHHHHHHHHHHHHHcCCCEEE
Confidence 43222 23444 455777889999999999997 999999997777776663 35899999999999999998765
Q ss_pred eEEEecCCCHHHHHHHHHHHHhcCCCCCceeecccccc
Q psy8199 829 GGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQI 866 (965)
Q Consensus 829 ~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~ 866 (965)
...+ ..++.++..+.++++.+++ ...+.+.+++|.
T Consensus 172 ~~vv-~~~n~~~~~e~~~~~~~lg--~~~~~~~p~~~~ 206 (412)
T PRK13745 172 MAVV-NDFNADYPLDFYHFFKELD--CHYIQFAPIVER 206 (412)
T ss_pred EEEE-cCCccccHHHHHHHHHHcC--CCeEEEEeccCc
Confidence 4443 3577788888999999999 888888888873
|
|
| >PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=9.4e-09 Score=111.66 Aligned_cols=188 Identities=14% Similarity=0.209 Sum_probs=139.6
Q ss_pred cCCCCCCCCCCCCCCcCCCCcccccCCCHHHHHHHHHHHHHC------CCCEEEEeeccCCCCcccHHHHHHHHHHHHh-
Q psy8199 689 TGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSD------GATRFCMGAAWRELKDRDLDNIENMICEVKK- 761 (965)
Q Consensus 689 s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~------g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~- 761 (965)
-.||+.+|.||..... + ..+.++++||++++...... ....+.+.|++.|+.. ++.+.++++.+++
T Consensus 117 QvGC~~~C~FCatg~~-g----~~RnLt~~EIv~QV~~~~~~~~~~~~~~~~vVfmGmGEPL~N--~d~v~~~l~~l~~~ 189 (356)
T PRK14462 117 QVGCKVGCAFCLTAKG-G----FVRNLSAGEIVGQILWIKKDNNIPYEKRVNIVYMGMGEPLDN--LDNVSKAIKIFSEN 189 (356)
T ss_pred cccCCCCCccCCCCCC-C----CcccCCHHHHHHHHHHHHHhhhccccccCCeEEeCCcccccC--HHHHHHHHHHhcCc
Confidence 4799999999975532 1 12458999999999755442 2567888888778554 7889999999997
Q ss_pred cCcE-----eEEe-cCCCCHHHHHHHHHhCC-CeEeccCCC-CHHHHhcccC---CCCHHHHHHHHH-HHHHcCCcee--
Q psy8199 762 IGLE-----TCLT-LGMLNENQAYRLKKVGL-DYYNHNLDT-SPKLYGDIIS---TRDYENRLNTLK-NVRNVGINIC-- 827 (965)
Q Consensus 762 ~~~~-----i~~~-~~~~~~e~l~~Lk~aG~-~~i~i~~es-~~~~~~~i~~---~~~~~~~~~~i~-~~~~~Gi~v~-- 827 (965)
.|+. ++++ .|.. +.+++|.+.++ -.+.+++-+ +++.++++.+ ..+.++.+++++ .+.+.|-+++
T Consensus 190 ~Gl~~~~r~itVsTsG~~--~~i~~L~~~dl~v~LaiSLha~d~e~r~~l~pv~~~~~l~~ll~~l~~y~~~~~~~i~ie 267 (356)
T PRK14462 190 DGLAISPRRQTISTSGLA--SKIKKLGEMNLGVQLAISLHAVDDELRSELMPINKAYNIESIIDAVRKFPIDQRKRVMFE 267 (356)
T ss_pred cCCCcCCCceEEECCCCh--HHHHHHHhcCCCeEEEEECCCCCHHHHHHhCCCCccCCHHHHHHHHHHHHHHhCCeEEEE
Confidence 4663 3553 3444 46777887765 456678999 8999999987 235688999887 4556776555
Q ss_pred eeEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCCCCCCCHHHHHHHHHHHHH
Q psy8199 828 CGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARI 891 (965)
Q Consensus 828 ~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~~~~~~~~~~~~~ia~~R~ 891 (965)
.-+|-|..++.|++..++++++.++ ..|.+-+|.|.++.++ ++++.+++.+...+++.
T Consensus 268 yvLI~GvNDs~e~a~~La~llk~l~---~~VnLIPyn~~~~~~~---~~ps~e~i~~f~~~l~~ 325 (356)
T PRK14462 268 YLVIKDVNDDLKSAKKLVKLLNGIK---AKVNLILFNPHEGSKF---ERPSLEDMIKFQDYLNS 325 (356)
T ss_pred EEEECCCCCCHHHHHHHHHHHhhcC---cEEEEEeCCCCCCCCC---CCCCHHHHHHHHHHHHH
Confidence 5666677899999999999999986 5788888888877654 56788887777666655
|
|
| >TIGR01366 serC_3 phosphoserine aminotransferase, putative | Back alignment and domain information |
|---|
Probab=99.08 E-value=9.7e-09 Score=114.79 Aligned_cols=311 Identities=12% Similarity=0.080 Sum_probs=174.3
Q ss_pred CHHHHHHHHHHHhhcc-ccccCCCCcHHHHHHHHHHHhhcCCC-CCeEEEc-CChhHHHHHHHHHHHHHHHhcCCCCceE
Q psy8199 272 NSYINKALKNQLNKLE-HVMLSNLTHKPVIKLSEKLSSLTQYK-LGHCFYG-SDGASAVEVALKMSFHYWYNKGFLNKKK 348 (965)
Q Consensus 272 ~p~v~~av~~~~~~~~-~~~~~~~~~~~~~~la~~l~~~~~~~-~~~v~~~-~sGseA~~~Al~~a~~~~~~~g~~~~~~ 348 (965)
+|+|.+|+..+..... ..+......+...+..+.++++++.. ..+|+|+ +|||.|++.++..... + +
T Consensus 15 ~~~v~~a~~~~~~~~~~~~hr~~~f~~~~~~~r~~l~~l~~~~~~~~v~f~~gs~T~a~~~~~~~l~~--------~--~ 84 (361)
T TIGR01366 15 RLEQLQALTTTAASLFGTSHRQAPVKNLVGRVREGLAELFSLPDGYEVILGNGGATAFWDAATFGLIE--------K--K 84 (361)
T ss_pred CHHHHHHHHhcCccccccCcCChHHHHHHHHHHHHHHHHhCCCCCceEEEECCchhHHHHHHHHhccc--------c--c
Confidence 6888888765422211 11222333556677788888888743 3378885 7799999999875521 2 2
Q ss_pred EEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEc
Q psy8199 349 FICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIE 428 (965)
Q Consensus 349 vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~e 428 (965)
.+....+.+|....-.+... +....+..++.+... .++..+ .+++..|.+.
T Consensus 85 ~l~i~~G~~~~~~~~~a~~~---------~~~~~~~~~~~~~~~-----------------~~~~~~---~~~~~lV~~~ 135 (361)
T TIGR01366 85 SLHLSFGEFSSKFAKAVKLA---------PWLGEPIIVTADPGS-----------------APEPQA---DPGVDVIAWA 135 (361)
T ss_pred ccEEecCHHHHHHHHHHHhh---------hccCCceEEecCCCC-----------------CCCCcc---CCCCCEEEEc
Confidence 33333344454222222110 000122333332110 111111 2355666666
Q ss_pred cccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcceeeec--cccCCCcccceeeeec
Q psy8199 429 PLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS--KGITGGYLPLSLVMTT 506 (965)
Q Consensus 429 p~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~s--K~l~gG~~pig~v~~~ 506 (965)
- ..+.+|.+.| ++ ++++++|+++|+|-+++ +|.. ....+ . .|++++| |++++- -.++.++.+
T Consensus 136 h-~et~tG~~~p----i~---~I~~~~g~~~iVDavqs-~g~~--~idv~--~--~D~~~~s~~K~lg~~-~Gl~~~~~s 199 (361)
T TIGR01366 136 H-NETSTGVAVP----VR---RPEGSDDALVVIDATSG-AGGL--PVDIA--E--TDVYYFAPQKNFASD-GGLWLAIMS 199 (361)
T ss_pred c-cCCccceecc----cc---cccccCCCeEEEEcCcc-ccCC--CCCHH--H--CCEEEEEchhhcCCC-CceEEEEEC
Confidence 5 6678899887 43 44789999999999997 5421 22222 1 5888886 777652 124455668
Q ss_pred HHHHHhhhcc---CCc-ccc----------cccCCCCCCHH-HHHHHHHHHHHHhcc-c---HHHHHHHHHHHHHHHHHc
Q psy8199 507 DKIYNSIYYK---NNI-NIF----------LHSHSYSGNPL-ACCAALATLEIFNKD-N---ILQRISQDMKKITKALTS 567 (965)
Q Consensus 507 ~~i~~~~~~~---~~~-~~~----------~~~~t~~~~~~-~~aaa~a~L~~~~~~-~---~~~~~~~~~~~l~~~L~~ 567 (965)
+++++.+... +.. ..+ ..+.|.+..++ .+.+..++|+.+.+. + ..++.+++.+++++.|.+
T Consensus 200 ~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gg~e~~~~r~~~l~~~l~~~l~~ 279 (361)
T TIGR01366 200 PAALERIEAIAASGRWVPEFLSLPTAVDNSLKNQTYNTPAIATLALLAEQIDWMNGNGGLDWAVARTADSSSRLYSWAQE 279 (361)
T ss_pred HHHHhhhhcccCCCCCCchhhhHHHHHhccccCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHh
Confidence 8777655421 000 001 01244444444 444677888887654 2 346667777778888877
Q ss_pred ccCC-Cceee--eeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec-----CCEEEEeCCcccCHHHHHHHHH
Q psy8199 568 LITH-PKIIN--FRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-----GNTVYLMPPYILNKNEIQHMTS 639 (965)
Q Consensus 568 l~~~-~~i~~--v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-----~~~lR~~p~~~~t~~~i~~~~~ 639 (965)
+... +.+.. .+. .....+.+. ++. ....+.+.|.++||.+.+. ++.+|++.....+.++++++++
T Consensus 280 ~~~~~~~~~~~~~~s-~~v~~v~~~--~g~----~~~~v~~~L~~~gI~i~~~~~~l~~~~vRis~~~~~t~~di~~l~~ 352 (361)
T TIGR01366 280 RPYATPFVTDPGKRS-QVVGTIDFV--DDI----DAATVAKILRANGIVDTEPYRKLGRNQLRVAMFPAIDPDDVEALTE 352 (361)
T ss_pred CCCcccCCCChhhcc-cceEEEECC--Ccc----CHHHHHHHHHHCCCeeccCccccCCCcEEEEcCCCCCHHHHHHHHH
Confidence 6321 11111 111 111222222 211 1345777888899988753 3579999999999999999999
Q ss_pred hhhcc
Q psy8199 640 AIFQT 644 (965)
Q Consensus 640 ~l~~~ 644 (965)
++.+.
T Consensus 353 al~~~ 357 (361)
T TIGR01366 353 CVDWV 357 (361)
T ss_pred HHHHH
Confidence 98764
|
This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria. |
| >PRK14467 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.3e-08 Score=110.81 Aligned_cols=189 Identities=15% Similarity=0.206 Sum_probs=133.6
Q ss_pred cCCCCCCCCCCCCCCcCCCCcccccCCCHHHHHHHHHHHHH----CCCCEEEEeeccCCCCcccHHHHHHHHHHHHh-cC
Q psy8199 689 TGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKS----DGATRFCMGAAWRELKDRDLDNIENMICEVKK-IG 763 (965)
Q Consensus 689 s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~----~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~-~~ 763 (965)
+.||+.+|.||..... + -.+.++.+||++++..... .++..|.+.|.+.|+.. ++.+.++++.+++ .|
T Consensus 106 q~GC~l~C~FC~t~~~-G----~~rnlt~~EIv~Qv~~~~~~~~~~~v~~VvfmGmGEPL~N--~d~v~~~l~~l~~~~g 178 (348)
T PRK14467 106 QVGCAVGCKFCATAKD-G----LIRNLRTAEIIDQYIQVQKFLGENRIRNVVFMGMGEPLAN--YENVRKAVQIMTSPWG 178 (348)
T ss_pred CCCCCCcCcCCCCCCC-C----CcCCCCHHHHHHHHHHHHHHhccCCCCeEEEEccChhhcC--HHHHHHHHHHHcChhc
Confidence 7999999999986532 1 1245899999999876554 25788999885667544 7899999999975 56
Q ss_pred c-----EeEEe-cCCCCHHHHHHHHHh----CCCeEeccCCC-CHHHHhcccCC---CCHHHHHHHHHHH-HHcCCcee-
Q psy8199 764 L-----ETCLT-LGMLNENQAYRLKKV----GLDYYNHNLDT-SPKLYGDIIST---RDYENRLNTLKNV-RNVGINIC- 827 (965)
Q Consensus 764 ~-----~i~~~-~~~~~~e~l~~Lk~a----G~~~i~i~~es-~~~~~~~i~~~---~~~~~~~~~i~~~-~~~Gi~v~- 827 (965)
+ +++++ .|.. ..++++... .+ .+.+++.+ +++.++++.+. .+.++.+++++.. ++.|-+++
T Consensus 179 l~~~~r~itvsT~G~~--~~i~~l~~~~~l~~v-~LalSLha~~~e~r~~i~p~~~~~~l~~l~~~~~~~~~~~g~~V~i 255 (348)
T PRK14467 179 LDLSKRRITISTSGII--HQIKRMAEDPVMPEV-NLAVSLNASSQKLRERIMPISKTNTLEELMEVLKQYPLPPGRRIML 255 (348)
T ss_pred cCcCCCcEEEECCCCh--hHHHHHHhhccccCe-eEEEECCCCCHHHHHHhcCCccccCHHHHHHHHHHHHHhcCCeEEE
Confidence 6 55553 3443 224444432 34 34589999 89999999974 3677777777653 36676655
Q ss_pred -eeEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCCCCCCCHHHHHHHHHHHHH
Q psy8199 828 -CGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARI 891 (965)
Q Consensus 828 -~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~~~~~~~~~~~~~ia~~R~ 891 (965)
.-+|-|..++.+++.+..++++.++. ...|.+.+|.|.++.+ .++++.+++.+...+++.
T Consensus 256 eyvLIpGvNDs~e~a~~La~~l~~l~~-~~~VnLIPynp~~~~~---~~~ps~e~i~~f~~~L~~ 316 (348)
T PRK14467 256 EYVLIKGVNDSPEDALRLAQLIGKNKK-KFKVNLIPFNPDPELP---YERPELERVYKFQKILWD 316 (348)
T ss_pred EEEEECCccCCHHHHHHHHHHHhcCCC-ceEEEEecCCCCCCCC---CCCCCHHHHHHHHHHHHH
Confidence 45555667999999999999998741 4567777777777664 466788877776666554
|
|
| >PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.2e-08 Score=107.73 Aligned_cols=189 Identities=15% Similarity=0.145 Sum_probs=136.0
Q ss_pred cCCCCCCCCCCCCCCcCCCCcccccCCCHHHHHHHHHHHHHC-CCCEEEEeeccCCCCcccHHHHHHHHHHHHh-cCc--
Q psy8199 689 TGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSD-GATRFCMGAAWRELKDRDLDNIENMICEVKK-IGL-- 764 (965)
Q Consensus 689 s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~-g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~-~~~-- 764 (965)
.-||+.+|.||..... +. .+.++.+||++++....+. ++..|.|.|-+.|+ ..++.+++.++.+++ .++
T Consensus 110 QvGC~~~C~FC~Tg~~---g~--~rnLt~~EIl~Qv~~~~~~~~i~nIvfmGmGEPL--~N~d~vi~al~~l~~~~g~~~ 182 (345)
T PRK14466 110 QVGCKMNCLFCMTGKQ---GF--TGNLTAAQILNQIYSLPERDKLTNLVFMGMGEPL--DNLDEVLKALEILTAPYGYGW 182 (345)
T ss_pred CCCCCCCCCCCCCCCC---CC--CCCCCHHHHHHHHHhhhhcCCCCeEEEeeeCcCc--ccHHHHHHHHHHHhhccccCc
Confidence 5799999999985432 11 1348999999999877543 68999998855575 457888888888875 343
Q ss_pred ---EeEEecCCCCHHHHHHHHHhCCCeEeccCCC-CHHHHhcccCC---CCHHHHHHHHHHHH-HcCCc--eeeeEEEec
Q psy8199 765 ---ETCLTLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIIST---RDYENRLNTLKNVR-NVGIN--ICCGGIIGL 834 (965)
Q Consensus 765 ---~i~~~~~~~~~e~l~~Lk~aG~~~i~i~~es-~~~~~~~i~~~---~~~~~~~~~i~~~~-~~Gi~--v~~~~i~Gl 834 (965)
.++++..-..+..-+.+.+. -..+.+++.+ +++.++++.+. .+.++.+++++... +.|-+ +...+|=|.
T Consensus 183 s~r~ItVsT~G~~~~i~~l~~~~-~~~LavSLha~~~e~R~~i~P~~~~~~l~~l~~al~~y~~~~~rri~~Ey~Li~gv 261 (345)
T PRK14466 183 SPKRITVSTVGLKKGLKRFLEES-ECHLAISLHSPFPEQRRELMPAEKAFSIKEIIDLLKNYDFSKQRRVSFEYIVFKGL 261 (345)
T ss_pred CCceEEEEcCCCchHHHHHhhcc-CcEEEEEcCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHhhCCEEEEEEEEeCCC
Confidence 45543322334333333333 3567899999 99999999874 46899999988843 34434 445666677
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCCCCCCCHHHHHHHHHHHHH
Q psy8199 835 SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARI 891 (965)
Q Consensus 835 ~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~~~~~~~~~~~~~ia~~R~ 891 (965)
+++.||..+..++++.++ ..|.+.+|.|.|+.+ ..+++.+.+.+...+.+.
T Consensus 262 ND~~e~a~~L~~ll~~~~---~~VNLIp~Np~~~~~---~~~~s~~~~~~F~~~L~~ 312 (345)
T PRK14466 262 NDSLKHAKELVKLLRGID---CRVNLIRFHAIPGVD---LEGSDMARMEAFRDYLTS 312 (345)
T ss_pred CCCHHHHHHHHHHHcCCC---ceEEEEecCCCCCCC---CcCCCHHHHHHHHHHHHH
Confidence 899999999999999886 778999999998863 455677777777666665
|
|
| >TIGR03278 methan_mark_10 putative methanogenesis marker protein 10 | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.4e-08 Score=112.39 Aligned_cols=187 Identities=16% Similarity=0.218 Sum_probs=135.7
Q ss_pred cCCCC---CCCCCCCCCCcCCCCcccccCCCHHHHHHHHHHHHHC---CCCEEEEeeccCCCCcccHHHHHHHHHHHHhc
Q psy8199 689 TGGCT---EDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSD---GATRFCMGAAWRELKDRDLDNIENMICEVKKI 762 (965)
Q Consensus 689 s~~C~---~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~---g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~ 762 (965)
-..|. .+|.||..... . ...+.++++|+++++.+.... ....+.+.||+.++.. +++.++++.+++.
T Consensus 29 c~~C~~~~~~C~yC~~~~~---e-~~g~~~t~~evl~ev~~d~~~~~~~~ggVtisGGGepl~~---~~l~eLl~~lk~~ 101 (404)
T TIGR03278 29 CKNCPPGTKGCDYCTRSVW---E-INGDFIPPQVVLGEVQTSLGFRTGRDTKVTISGGGDVSCY---PELEELTKGLSDL 101 (404)
T ss_pred CCcCCCCCCCCCCCCchhh---h-hcCCcCCHHHHHHHHHHHHHHhcCCCCEEEEECCcccccC---HHHHHHHHHHHhC
Confidence 45663 37777753321 1 123458999999999886652 3578899888877554 6788888888887
Q ss_pred CcEeEE--ec--CCCCHHHHHHHHHhCCCeEeccCCC-CHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCC
Q psy8199 763 GLETCL--TL--GMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSES 837 (965)
Q Consensus 763 ~~~i~~--~~--~~~~~e~l~~Lk~aG~~~i~i~~es-~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et 837 (965)
++.+++ ++ +..+++.+++|++.|++.+.+++.+ +++.++++.+....+..++.++.+.+ ++.+...+++=.|-+
T Consensus 102 gi~taI~~TnG~~l~~~e~~~~L~~~gld~v~iSvka~dpe~h~kl~G~~~a~~ILe~L~~L~e-~~~v~~~ivlIPGiN 180 (404)
T TIGR03278 102 GLPIHLGYTSGKGFDDPEIAEFLIDNGVREVSFTVFATDPELRREWMKDPTPEASLQCLRRFCE-SCEVHAASVIIPGVN 180 (404)
T ss_pred CCCEEEeCCCCcccCCHHHHHHHHHcCCCEEEEecccCCHHHHHHHhCCCCHHHHHHHHHHHHh-cCCEEEEEEEeCCcc
Confidence 766654 44 4569999999999999999999999 99999998887777999999999998 566554444434433
Q ss_pred H-HHHHHHHHHHHhcCCCCCceeeccccccCC-------CCCC-CCCCCCHHHHHHH
Q psy8199 838 R-DQRAELIFQLANLNPYPESVPINNLVQIKG-------TPLY-GSSILDPLEFIRT 885 (965)
Q Consensus 838 ~-ed~~~~l~~l~~l~~~~~~i~~~~~~P~~g-------T~l~-~~~~~~~~~~~~~ 885 (965)
+ ++..++++++.+++ +..+.+.+|.+... .++. +..+.+.+++.+.
T Consensus 181 D~eel~~ti~~L~~lg--~~~V~L~~y~~~g~~ky~lg~~~~~~~~~~~~~~e~~~~ 235 (404)
T TIGR03278 181 DGDVLWKTCADLESWG--AKALILMRFANTEEQGLILGNAPIIPGIKPHTVSEFKNI 235 (404)
T ss_pred CcHHHHHHHHHHHHCC--CCEEEEEecccccccccccCCcCcccCCCCCCHHHHHHH
Confidence 3 44469999999999 88888888875321 1222 2455677777766
|
Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon. |
| >PRK13758 anaerobic sulfatase-maturase; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.4e-08 Score=114.58 Aligned_cols=195 Identities=12% Similarity=0.171 Sum_probs=128.1
Q ss_pred EeeccCCCCCCCCCCCCCCcCCC-CcccccCCCHHHHHHHHHHHHHC--CCCEEEEeeccCCCCcccHHHHHHHHHHHHh
Q psy8199 685 LSIKTGGCTEDCGYCPQSTHYNT-EITATKILSIESVITAAQKAKSD--GATRFCMGAAWRELKDRDLDNIENMICEVKK 761 (965)
Q Consensus 685 i~~~s~~C~~~C~fC~~~~~~~~-~~~~~~~~~~eei~~~~~~~~~~--g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~ 761 (965)
+..+|..|+.+|.||........ .......++.+.+.+.++.+.+. +...|.++||+ |+.. +.+.+.++++.+++
T Consensus 8 ~~~~t~~CNl~C~yC~~~~~~~~~~~~~~~~m~~~~~~~~i~~~~~~~~~~~~i~~~GGE-Pll~-~~~~~~~~~~~~~~ 85 (370)
T PRK13758 8 IKPASSGCNLKCTYCFYHSLSDNRNVKSYGIMRDEVLESMVKRVLNEAEGHCSFAFQGGE-PTLA-GLEFFEELMELQRK 85 (370)
T ss_pred EecCCCCcCCCCcccCCcCccccccccccCCCCHHHHHHHHHHHHhccCCceEEEEECCc-cccC-ChHHHHHHHHHHHH
Confidence 33325899999999976532111 11122347777777777665554 34567777664 5443 23444455555554
Q ss_pred cC---c----EeEEecCCCCHHHHHHHHHhCCCeEeccCCCCHHHHhcccC----CCCHHHHHHHHHHHHHcCCceeeeE
Q psy8199 762 IG---L----ETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIIS----TRDYENRLNTLKNVRNVGINICCGG 830 (965)
Q Consensus 762 ~~---~----~i~~~~~~~~~e~l~~Lk~aG~~~i~i~~es~~~~~~~i~~----~~~~~~~~~~i~~~~~~Gi~v~~~~ 830 (965)
.+ + .+.+|...++++.++.|++.|+ .+.+++++.++.+...++ ..+++..+++++.+++.|+++...+
T Consensus 86 ~~~~~~~~~~~i~TNG~ll~~~~~~~l~~~~~-~v~iSlDg~~~~hd~~R~~~~g~~~f~~v~~~i~~l~~~~~~~~i~~ 164 (370)
T PRK13758 86 HNYKNLKIYNSLQTNGTLIDESWAKFLSENKF-LVGLSMDGPKEIHNLNRKDCCGLDTFSKVERAAELFKKYKVEFNILC 164 (370)
T ss_pred hccCCCeEEEEEEecCEecCHHHHHHHHHcCc-eEEEeecCCHHHhccccCCCCCCccHHHHHHHHHHHHHhCCCceEEE
Confidence 32 2 4566777889999999999987 899999997777877763 5689999999999999999887766
Q ss_pred EEecCCCHHHHHHHHHHHHhcCCCCCceeecc-ccccCC-CCCCCCCCCCHHHHHHHH
Q psy8199 831 IIGLSESRDQRAELIFQLANLNPYPESVPINN-LVQIKG-TPLYGSSILDPLEFIRTI 886 (965)
Q Consensus 831 i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~-~~P~~g-T~l~~~~~~~~~~~~~~i 886 (965)
++. ..+.+++.+.++++.+++ ...+.+.+ +.|... ....+ ...+++++.+.+
T Consensus 165 ~v~-~~n~~~l~~i~~~~~~~g--~~~~~~~~~~~p~~~~~~~~~-~~l~~~~~~~~~ 218 (370)
T PRK13758 165 VVT-SNTARHVNKIYKYFKEKD--FKFLQFINCLDPLYEEKGKYN-YSLKPKDYTKFL 218 (370)
T ss_pred Eec-cccccCHHHHHHHHHHcC--CCeEeeeeccCccccccCCCc-CccCHHHHHHHH
Confidence 664 456777888888999998 67665543 344321 11111 234666555443
|
|
| >PLN02590 probable tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.4e-07 Score=108.90 Aligned_cols=321 Identities=13% Similarity=0.056 Sum_probs=177.5
Q ss_pred CcHHHHHHHHHHHhhcCCCC-------CeEEEcCChhHHHHHHHHHHHHHHHh-cCCCCceE-EEEEcCCccCCcccccc
Q psy8199 295 THKPVIKLSEKLSSLTQYKL-------GHCFYGSDGASAVEVALKMSFHYWYN-KGFLNKKK-FICLQNSYHGETLGALA 365 (965)
Q Consensus 295 ~~~~~~~la~~l~~~~~~~~-------~~v~~~~sGseA~~~Al~~a~~~~~~-~g~~~~~~-vi~~~~~yHg~~~~~~~ 365 (965)
.++....+.+.++++++.+. ..-+|++||||||..|+.+||..... .|..+..+ ++.....-|-+..-+..
T Consensus 168 ~t~lE~~vi~wl~~l~glp~~~~~~~~~gG~~~sGgSeAnl~al~aAR~~~~~~~g~~~~~~~vvy~S~~aH~Sv~KAa~ 247 (539)
T PLN02590 168 ATELEIIVLDWLAKLLQLPDHFLSTGNGGGVIQGTGCEAVLVVVLAARDRILKKVGKTLLPQLVVYGSDQTHSSFRKACL 247 (539)
T ss_pred hHHHHHHHHHHHHHHhCCCcccccCCCCceEEcCchHHHHHHHHHHHHHHHHhhhcccCCCCEEEEecCCchHHHHHHHH
Confidence 34555667777888875332 23678999999999999999985432 23222222 33333334544332323
Q ss_pred ccCCcCccchhcccCCCeeEecCCCC-CCCCCCCChhHHHHHHHHHHHHHHHhC---CCcEEEEEEccccccCCCcccCC
Q psy8199 366 VTNIQSFKEIYTSLLNKTYIITTPDS-RNINKGNSANEIARCAIFDLEILLKKN---HNKIAAIIIEPLVQCAGGMIMYD 441 (965)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~~le~~l~~~---~~~~aaii~ep~v~~~~G~~~~~ 441 (965)
+.|- ....++.+|.+.. .+. -|+++|+++|++. +....+|+..- -..++|.+-|
T Consensus 248 ilGl---------g~~~vr~Vp~d~~~~~~-----------md~~~L~~~I~~d~~~g~~P~~VvaTa-GTT~tGaiDp- 305 (539)
T PLN02590 248 IGGI---------HEENIRLLKTDSSTNYG-----------MPPESLEEAISHDLAKGFIPFFICATV-GTTSSAAVDP- 305 (539)
T ss_pred HcCC---------CcccEEEEeCCCCCCCc-----------CCHHHHHHHHHHHHhcCCCcEEEEEEe-CCCCCcccCC-
Confidence 2221 1123556665421 122 3788999888642 22344555544 4556787777
Q ss_pred hHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCC-Ccceeeec--cccCCCcccceeeeecHH--HHHhhhcc
Q psy8199 442 SIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEI-WPDFLCLS--KGITGGYLPLSLVMTTDK--IYNSIYYK 516 (965)
Q Consensus 442 ~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~-~pDivt~s--K~l~gG~~pig~v~~~~~--i~~~~~~~ 516 (965)
+++|.++|++||++|++|-++.|+...-.....-..|+ ..|-+++. |.+.-. ++.|+++.+.. +.+.+...
T Consensus 306 ---l~~Ia~i~~~~g~WlHVDaA~GG~al~~~~~r~~~~Gie~ADSit~D~HK~l~~p-~~cg~llvr~~~~l~~a~~~~ 381 (539)
T PLN02590 306 ---LVPLGNIAKKYGIWLHVDAAYAGNACICPEYRKFIDGIENADSFNMNAHKWLFAN-QTCSPLWVKDRYSLIDALKTN 381 (539)
T ss_pred ---HHHHHHHHHHhCCeEEEecchhhhhhcChhhHHHhcCCccCCEEEECchhhcCcC-cCEEEEEecCHHHHHHHhhcC
Confidence 99999999999999999999987642211111112354 47888764 666555 57888888753 33333210
Q ss_pred C-----C---c---ccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHH---HHHHHHHHHHHHcccCCCceeeee-cee
Q psy8199 517 N-----N---I---NIFLHSHSYSGNPLACCAALATLEIFNKDNILQRI---SQDMKKITKALTSLITHPKIINFR-QKG 581 (965)
Q Consensus 517 ~-----~---~---~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~---~~~~~~l~~~L~~l~~~~~i~~v~-g~G 581 (965)
. . . ..+...+.-.+-+......-.+|+.+-.+.+.+.+ -++.+++.+.|++. |.+.-+. ..=
T Consensus 382 ~~YL~~~~~~~~~~~d~~d~~i~lsRr~raLklW~~lr~~G~~G~~~~i~~~~~lA~~~~~~l~~~---~~fel~~~~~l 458 (539)
T PLN02590 382 PEYLEFKVSKKDTVVNYKDWQISLSRRFRSLKLWMVLRLYGSENLRNFIRDHVNLAKHFEDYVAQD---PSFEVVTTRYF 458 (539)
T ss_pred HHHhCCcccccccCCCccccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCeEEecCCce
Confidence 0 0 0 00111111112334445555666666555554444 45666666666543 4454322 222
Q ss_pred EEEEEEEeecCcc--chhhHHHHHHHHHHHcCcEEe-ec---C-CEEEEeC-CcccCHHHHHHHHHhhhcc
Q psy8199 582 MIWAFDVIIEDPE--QIETFSKKFFVAALKNELLLR-PI---G-NTVYLMP-PYILNKNEIQHMTSAIFQT 644 (965)
Q Consensus 582 ~~~~i~~~~~~~~--~~~~~~~~~~~~l~~~Gi~~~-~~---~-~~lR~~p-~~~~t~~~i~~~~~~l~~~ 644 (965)
.++.|.+...... .......++.+++.+.|.+.. +. | -.+|++. ....++++++.+++.+.+.
T Consensus 459 ~iVcFr~~~~~~~~~~~~~ln~~l~~~l~~~G~~~vs~t~~~g~~~lR~~i~n~~T~~~dv~~~~~~i~~~ 529 (539)
T PLN02590 459 SLVCFRLAPVDGDEDQCNERNRELLAAVNSTGKIFISHTALSGKFVLRFAVGAPLTEEKHVTEAWQIIQKH 529 (539)
T ss_pred EEEEEEecCCCCCHHHHHHHHHHHHHHHHhCCCEEEEeeEECCEEEEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 3444444311101 112344577888888886543 21 2 4788864 3456788899888877543
|
|
| >PRK06434 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.1e-08 Score=114.16 Aligned_cols=237 Identities=16% Similarity=0.197 Sum_probs=147.6
Q ss_pred CCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcC
Q psy8199 292 SNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQS 371 (965)
Q Consensus 292 ~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~ 371 (965)
+++.++...+|+++++++.+ .+.++.++||+.|+.+|+.... .++++||+....|.+......
T Consensus 59 ~r~~~P~~~~lE~~la~leg--~~~av~~sSG~aAi~~al~all--------~~GD~Vl~~~~~yg~t~~~~~------- 121 (384)
T PRK06434 59 TRWGNPTVQAFEEKYAVLEN--AEHALSFSSGMGAITSAILSLI--------KKGKRILSISDLYGQTFYFFN------- 121 (384)
T ss_pred eCCCChhHHHHHHHHHHHhC--CCcEEEeCCHHHHHHHHHHHHh--------CCCCEEEEecCccchHHHHHH-------
Confidence 45677888999999999984 5678999999999999998653 257888887776655421110
Q ss_pred ccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHH
Q psy8199 372 FKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREI 451 (965)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l 451 (965)
.........+.+++.+ +.+.++ ++ ++++.+|++|. +.|+++.+.+ +++|.++
T Consensus 122 --~~~~~~Gi~v~fvd~~-----------------~~~~~~--l~--~~~tklv~~e~-~snpt~~v~D----i~~I~~l 173 (384)
T PRK06434 122 --KVLKTLGIHVDYIDTD-----------------RLNSLD--FD--PSNYDLIYAES-ITNPTLKVPD----IKNVSSF 173 (384)
T ss_pred --HHHHhcCcEEEEECCC-----------------Chhhee--ec--CCCeeEEEEEc-CCCCCceeec----HHHHHHH
Confidence 1111112233444332 111221 22 34678899998 8888887776 9999999
Q ss_pred HHhcCCeEEEeccccCCCcccccccccccCCCcceeeec--cccCC-Ccccceeeee-cHHHHHhhhccCCcccccccCC
Q psy8199 452 CNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS--KGITG-GYLPLSLVMT-TDKIYNSIYYKNNINIFLHSHS 527 (965)
Q Consensus 452 ~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~s--K~l~g-G~~pig~v~~-~~~i~~~~~~~~~~~~~~~~~t 527 (965)
|++++ +++|.++. -+. ...-.+...|++++| |-++| |-.-.|+++. ++++.+.+.. ......
T Consensus 174 a~~~~--lvVD~t~~-s~~-----~~~pl~~gaDivv~S~tK~i~G~~d~~gG~vv~~~~~~~~~~~~------~~~~~G 239 (384)
T PRK06434 174 CHEND--VIVDATFA-SPY-----NQNPLDLGADVVIHSATKYISGHSDVVMGVAGTNNKSIFNNLVE------RRKTLG 239 (384)
T ss_pred HHHcC--eEEECCCC-Ccc-----cCCchhcCCCEEEeecccccCCCCCceEEEEecCcHHHHHHHHH------HHHhcC
Confidence 99998 45698863 111 222334568999876 77876 2112355555 4556555442 111122
Q ss_pred CCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcccC-----CCcee----eeeceeEEEEEEEe
Q psy8199 528 YSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLIT-----HPKII----NFRQKGMIWAFDVI 589 (965)
Q Consensus 528 ~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~~-----~~~i~----~v~g~G~~~~i~~~ 589 (965)
...+|+.++.++.-|+.+. ...++-.++...+.+.|+...+ +|++. ..+|-|.|++|++.
T Consensus 240 ~~~~~~~A~l~~~gL~tL~--~R~~r~~~~a~~~a~~L~~~p~v~~V~yPgl~~~~~~~~g~g~~~sf~l~ 308 (384)
T PRK06434 240 SNPDPIQAYLALRGLKTLG--LRMEKHNKNGMELARFLRDSKKISNVYYPDTEIGKKVLRGFGGMLSFELR 308 (384)
T ss_pred CCCCHHHHHHHHhCCCcHH--HHHHHHHHHHHHHHHHHHcCCCccEEECCChHHHHHhcCCCCceEEEEEC
Confidence 3457887777777666553 2466667777788777765422 33321 12467889999985
|
|
| >cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.4e-08 Score=113.69 Aligned_cols=317 Identities=9% Similarity=0.041 Sum_probs=172.5
Q ss_pred CCHHHHHHHHHHHhhccccccCC--CC------cHHHHHHHHHHHhhcCC-CCCeEEEcCC-hhHHHHHHHHHHHHHHHh
Q psy8199 271 SNSYINKALKNQLNKLEHVMLSN--LT------HKPVIKLSEKLSSLTQY-KLGHCFYGSD-GASAVEVALKMSFHYWYN 340 (965)
Q Consensus 271 ~~p~v~~av~~~~~~~~~~~~~~--~~------~~~~~~la~~l~~~~~~-~~~~v~~~~s-GseA~~~Al~~a~~~~~~ 340 (965)
.++.|++|+.+.+......+... .. .+...+..+.++++++. ..++|+|++| ||+|++.++.....
T Consensus 10 ~p~~V~~a~~~~~~~~~~~~rg~~~~~~r~~~~~~~~~~~r~~l~~l~~~~~~~~vvf~~gs~T~a~~~~~~~l~~---- 85 (355)
T cd00611 10 LPEEVLEQAQKELLDFNGLGMSVMEMSHRSKDFEAIVNEAESDLRELLNIPDNYKVLFLQGGATGQFAAVPLNLLG---- 85 (355)
T ss_pred CCHHHHHHHHHHHhhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhcCC----
Confidence 47899999998875432111100 11 24567788889999874 4567999877 99999999876521
Q ss_pred cCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHH-HHHHHHHHHhCC
Q psy8199 341 KGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCA-IFDLEILLKKNH 419 (965)
Q Consensus 341 ~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~le~~l~~~~ 419 (965)
++ ++..+|+. +.|.-. .. . ...-....+..++.+..... .+ .+..+..+.
T Consensus 86 ~~--~~~~~i~~-g~~~~~-~~--~---------~a~~~g~~~~~~~~~~~g~~-----------~~~~~~~~~~~~--- 136 (355)
T cd00611 86 DK--GTADYVVT-GAWSAK-AA--K---------EAKRYGGVVVIVAAKEEGKY-----------TKIPDVETWDLA--- 136 (355)
T ss_pred CC--CeEEEEEC-CHHHHH-HH--H---------HHHhcCCCcEEEecccccCC-----------CCCCCHhhcCCC---
Confidence 11 12222322 222111 00 0 00001112333333211000 01 111111222
Q ss_pred CcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcceeeeccccCCCccc
Q psy8199 420 NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLP 499 (965)
Q Consensus 420 ~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~sK~l~gG~~p 499 (965)
+++..|.+.- ..+.+|...+ ++++.||+++++|-+|+ +|.. ..-.+.+++ ++..--|.+ | ...
T Consensus 137 ~~~~lV~~~h-~~t~tG~~~~---------~i~~~~g~~~~VDa~qs-~g~~--~idv~~~~~--~~ss~~K~l-G-P~G 199 (355)
T cd00611 137 PDAAYVHYCS-NETIHGVEFD---------EVPDTGGVPLVADMSSN-ILSR--PIDVSKFGV--IYAGAQKNL-G-PAG 199 (355)
T ss_pred CCCCEEEEeC-CcccccEEcc---------eecccCCCeEEEEcccc-ccCC--CCCHHHhCE--EEeeccccc-C-CCc
Confidence 3444555554 5567777532 45667999999999998 5421 233333332 221133755 3 345
Q ss_pred ceeeeecHHHHHhhhccCCc----cc-ccccCCC-CCCHHHHHHHHHHHHHHhcc-c---HHHHHHHHHHHHHHHHHccc
Q psy8199 500 LSLVMTTDKIYNSIYYKNNI----NI-FLHSHSY-SGNPLACCAALATLEIFNKD-N---ILQRISQDMKKITKALTSLI 569 (965)
Q Consensus 500 ig~v~~~~~i~~~~~~~~~~----~~-~~~~~t~-~~~~~~~aaa~a~L~~~~~~-~---~~~~~~~~~~~l~~~L~~l~ 569 (965)
+|.+++++++.+.+....+. .. .....++ +.|-.+..+..++|+++.+. + +.++.+++.+++++.|+++.
T Consensus 200 ~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tpn~~~i~~L~aal~~l~~~gg~e~i~~~~~~l~~~l~~~l~~~~ 279 (355)
T cd00611 200 VTVVIVRKDLLGKARKITPSMLNYKTHADNNSLYNTPPTFAIYMMGLVLKWLKEQGGVEAMEKRNRQKAQLLYDTIDNSN 279 (355)
T ss_pred eEEEEECHHHHhhcccCCCCcccHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCc
Confidence 88999999888654321000 00 0111112 33455777778889988755 3 45566677777777777662
Q ss_pred CC-Cceeeeecee-EEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec---CCEEEEeCCcccCHHHHHHHHHhhhc
Q psy8199 570 TH-PKIINFRQKG-MIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI---GNTVYLMPPYILNKNEIQHMTSAIFQ 643 (965)
Q Consensus 570 ~~-~~i~~v~g~G-~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~---~~~lR~~p~~~~t~~~i~~~~~~l~~ 643 (965)
.. ........+. .++.|.+. + ......+...+.+.|+...+. .+.+|+++....+.+|++.+++.+.+
T Consensus 280 gl~~~~~~~~~rs~~vvsf~~~--~----~~l~~~~~~~~~r~G~~~~~~~~~~g~vR~S~~~~nt~edi~~l~~al~~ 352 (355)
T cd00611 280 GFYRGPVDKRARSRMNVPFRLG--K----EELEKEFLKEAEAAGMIGLKGHRSVGGIRASIYNALSLEGVQALADFMKE 352 (355)
T ss_pred cccccCCCHHHcCceEEEEEcC--C----hhhhHHHHHHHHHCCCcccCCCcccCeEEEEccCCCCHHHHHHHHHHHHH
Confidence 21 0111111122 44666653 1 012234556788999985443 26899999999999999999998765
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine. |
| >COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.4e-09 Score=108.36 Aligned_cols=202 Identities=16% Similarity=0.202 Sum_probs=140.9
Q ss_pred eEeeccCCCCCCCCCCCCCCcCCCC----cccccCCCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHH
Q psy8199 684 LLSIKTGGCTEDCGYCPQSTHYNTE----ITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEV 759 (965)
Q Consensus 684 ~i~~~s~~C~~~C~fC~~~~~~~~~----~~~~~~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i 759 (965)
.+.+ |+.||.+|.||..+...... ...++..+.++|.+++....+ ....+++| +| ...+++.+++++.+
T Consensus 31 VlFv-TG~C~~~CfYCPvs~~r~gkdviyaNErpV~~~eDii~ea~~~~a---~GasiTGG-dP--l~~ieR~~~~ir~L 103 (353)
T COG2108 31 VLFV-TGLCNRSCFYCPVSDERKGKDVIYANERPVKSVEDIIEEAKLMDA---LGASITGG-DP--LLEIERTVEYIRLL 103 (353)
T ss_pred EEEE-ecccCCCcccCcCCHHhcCCcceeecccccCcHHHHHHHHHHhcc---ccccccCC-Ch--HHHHHHHHHHHHHH
Confidence 3445 99999999999877531111 123455678888888876554 44557666 45 35589999999999
Q ss_pred Hh-----cCcEeEEecCCCCHHHHHHHHHhCCCeEeccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEec
Q psy8199 760 KK-----IGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL 834 (965)
Q Consensus 760 ~~-----~~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl 834 (965)
|+ .++++.++.-..+++.++.|.+||+|-|-+... .-.....+.+++.++.|++.|+.++. -|-.+
T Consensus 104 K~efG~~fHiHLYT~g~~~~~e~l~~L~eAGLDEIRfHp~--------~~~~~~~e~~i~~l~~A~~~g~dvG~-EiPai 174 (353)
T COG2108 104 KDEFGEDFHIHLYTTGILATEEALKALAEAGLDEIRFHPP--------RPGSKSSEKYIENLKIAKKYGMDVGV-EIPAI 174 (353)
T ss_pred HHhhccceeEEEeeccccCCHHHHHHHHhCCCCeEEecCC--------CccccccHHHHHHHHHHHHhCcccee-ecCCC
Confidence 96 346677788889999999999999998877652 11134567899999999999998875 44456
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCceeeccccccCCC---------CCCCC----CCCCHHHHHHHHHHHHHHCCCCceecc
Q psy8199 835 SESRDQRAELIFQLANLNPYPESVPINNLVQIKGT---------PLYGS----SILDPLEFIRTIAVARITMPTSRIRMS 901 (965)
Q Consensus 835 ~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT---------~l~~~----~~~~~~~~~~~ia~~R~~lp~~~i~i~ 901 (965)
+.-.+.+.+.++++.+.+ .+++.++.+--..+. ...+. ...|.+..++++..+-.- -...+|.+
T Consensus 175 pg~e~~i~e~~~~~~~~~--~~FlNiNELE~sE~N~~~l~~~gy~~~~~~~~av~GS~E~~Lk~l~~~~~~-~~l~vH~C 251 (353)
T COG2108 175 PGEEEAILEFAKALDENG--LDFLNINELEFSENNYENLLERGYKISDDGSSAVAGSLEAALKVLKWAEEN-WDLTVHYC 251 (353)
T ss_pred cchHHHHHHHHHHHHhcc--cceeeeeeeeeccchHHHHHhcCceeccCCcccccchHHHHHHHHHHHhcc-cCceEEEC
Confidence 666777889999999998 899999877433321 01111 223557777777776543 23336677
Q ss_pred ccc
Q psy8199 902 AGR 904 (965)
Q Consensus 902 ~~~ 904 (965)
++.
T Consensus 252 ss~ 254 (353)
T COG2108 252 SSK 254 (353)
T ss_pred chh
Confidence 654
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 965 | ||||
| 1r30_A | 369 | The Crystal Structure Of Biotin Synthase, An S- Ade | 2e-88 | ||
| 3du4_A | 448 | Crystal Structure Of 7-Keto-8-Aminopelargonic Acid | 1e-73 | ||
| 3dod_A | 448 | Crystal Structure Of Plp Bound 7,8-diaminopelargoni | 2e-73 | ||
| 1qj3_A | 429 | Crystal Structure Of 7,8-Diaminopelargonic Acid Syn | 1e-65 | ||
| 1dty_A | 429 | Crystal Structure Of Adenosylmethionine-8-Amino-7-O | 3e-65 | ||
| 1s0a_A | 429 | Crystal Structure Of The Y17f Mutant Of 7,8- Diamin | 6e-65 | ||
| 1s07_A | 429 | Crystal Structure Of The R253a Mutant Of 7,8-Diamin | 1e-64 | ||
| 1mgv_A | 429 | Crystal Structure Of The R391a Mutant Of 7,8-Diamin | 1e-64 | ||
| 1s09_A | 429 | Crystal Structure Of The Y144f Mutant Of 7,8- Diami | 2e-64 | ||
| 1s08_A | 429 | Crystal Structure Of The D147n Mutant Of 7,8- Diami | 2e-64 | ||
| 1s06_A | 429 | Crystal Structure Of The R253k Mutant Of 7,8- Diami | 2e-64 | ||
| 3tft_A | 457 | Crystal Structure Of 7,8-Diaminopelargonic Acid Syn | 3e-61 | ||
| 3bv0_A | 437 | Crystal Structure Of Plp Bound 7,8-Diaminopelargoni | 3e-60 | ||
| 3lv2_A | 462 | Crystal Structure Of Mycobacterium Tuberculosis 7,8 | 4e-60 | ||
| 1v9f_A | 325 | Crystal Structure Of Catalytic Domain Of Pseudourid | 5e-48 | ||
| 1qyu_A | 349 | Structure Of The Catalytic Domain Of 23s Rrna Pseud | 4e-45 | ||
| 1prz_A | 252 | Crystal Structure Of Pseudouridine Synthase Rlud Ca | 1e-43 | ||
| 3hmu_A | 472 | Crystal Structure Of A Class Iii Aminotransferase F | 7e-40 | ||
| 3i5t_A | 476 | Crystal Structure Of Aminotransferase Prk07036 From | 3e-38 | ||
| 4a6r_A | 459 | Crystal Structure Of The Omega Transaminase From Ch | 8e-38 | ||
| 3n5m_A | 452 | Crystals Structure Of A Bacillus Anthracis Aminotra | 8e-36 | ||
| 4grx_A | 465 | Structure Of An Omega-Aminotransferase From Paracoc | 1e-35 | ||
| 3a8u_X | 449 | Crystal Structure Of Omega-Amino Acid:pyruvate Amin | 3e-35 | ||
| 3nui_A | 478 | Crystal Structure Of Omega-Transferase From Vibrio | 4e-35 | ||
| 4e3q_A | 473 | Pmp-Bound Form Of Aminotransferase Crystal Structur | 1e-32 | ||
| 2eh6_A | 375 | Crystal Structure Of Acetylornithine Aminotransfera | 1e-32 | ||
| 4e3r_A | 473 | Plp-Bound Aminotransferase Mutant Crystal Structure | 3e-32 | ||
| 3nx3_A | 395 | Crystal Structure Of Acetylornithine Aminotransfera | 7e-32 | ||
| 3i4j_A | 430 | Crystal Structure Of Aminotransferase, Class Iii Fr | 1e-30 | ||
| 2e54_A | 385 | Crystal Structure Of Acetylornithine Aminotransfera | 8e-30 | ||
| 3ruy_A | 392 | Crystal Structure Of The Ornithine-Oxo Acid Transam | 8e-30 | ||
| 1vef_A | 395 | Acetylornithine Aminotransferase From Thermus Therm | 2e-29 | ||
| 2ord_A | 397 | Crystal Structure Of Acetylornithine Aminotransfera | 4e-29 | ||
| 4adb_A | 406 | Structural And Functional Study Of Succinyl-ornithi | 4e-29 | ||
| 1szk_A | 426 | The Structure Of Gamma-Aminobutyrate Aminotransfera | 2e-27 | ||
| 1szs_A | 426 | The Structure Of Gamma-aminobutyrate Aminotransfera | 3e-27 | ||
| 1sf2_A | 426 | Structure Of E. Coli Gamma-Aminobutyrate Aminotrans | 3e-27 | ||
| 4a0g_A | 831 | Structure Of Bifunctional Dapa Aminotransferase-Dtb | 5e-27 | ||
| 1szu_A | 426 | The Structure Of Gamma-Aminobutyrate Aminotransfera | 9e-27 | ||
| 2pb0_A | 420 | Structure Of Biosynthetic N-Acetylornithine Aminotr | 3e-26 | ||
| 3q8n_A | 453 | Crystal Structure Of 4-Aminobutyrate Transaminase F | 1e-25 | ||
| 2can_A | 402 | Human Ornithine Aminotransferase Complexed With L-C | 3e-25 | ||
| 1oat_A | 439 | Ornithine Aminotransferase Length = 439 | 4e-25 | ||
| 2byj_A | 439 | Ornithine Aminotransferase Mutant Y85i Length = 439 | 1e-24 | ||
| 3oks_A | 451 | Crystal Structure Of 4-Aminobutyrate Transaminase F | 1e-24 | ||
| 2byl_A | 439 | Structure Of Ornithine Aminotransferase Triple Muta | 3e-24 | ||
| 1d7r_A | 433 | Crystal Structure Of The Complex Of 2,2-Dialkylglyc | 9e-24 | ||
| 1m0n_A | 433 | Structure Of Dialkylglycine Decarboxylase Complexed | 1e-23 | ||
| 1dgd_A | 432 | An Alkali Metal Ion Size-Dependent Switch In The Ac | 1e-23 | ||
| 1z3z_A | 431 | The Crystal Structure Of A Dgd Mutant: Q52a Length | 1e-23 | ||
| 1z7d_A | 433 | Ornithine Aminotransferase Py00104 From Plasmodium | 6e-23 | ||
| 1xpi_A | 231 | Crystal Structure Of The Catalytic Domain Of E. Col | 2e-22 | ||
| 3lg0_A | 422 | Structure Of Plasmodium Falciparum Ornithine Delta- | 2e-22 | ||
| 4a0f_A | 831 | Structure Of Selenomethionine Substituted Bifunctio | 3e-22 | ||
| 3r4t_A | 467 | Crystal Structure Of 4-Aminobutyrate Aminotransfera | 5e-22 | ||
| 3fcr_A | 459 | Crystal Structure Of Putative Aminotransferase (Yp_ | 6e-22 | ||
| 1v9k_A | 228 | The Crystal Structure Of The Catalytic Domain Of Ps | 9e-22 | ||
| 2eo5_A | 419 | Crystal Structure Of 4-Aminobutyrate Aminotransfera | 1e-21 | ||
| 3gju_A | 459 | Crystal Structure Of A Putative Aminotransferase (M | 8e-21 | ||
| 4ffc_A | 453 | Crystal Structure Of A 4-Aminobutyrate Aminotransfe | 4e-20 | ||
| 2i82_A | 217 | Crystal Structure Of Pseudouridine Synthase Rlua: I | 1e-18 | ||
| 2zuk_A | 439 | The Crystal Structure Of Alpha-Amino-Epsilon-Caprol | 4e-17 | ||
| 3dxw_A | 452 | The Crystal Structure Of Alpha-Amino-Epsilon-Caprol | 4e-17 | ||
| 4atp_A | 456 | Structure Of Gaba-Transaminase A1r958 From Arthroba | 9e-12 | ||
| 2jjh_A | 449 | E243 Mutant Of M. Tuberculosis Rv3290c Length = 449 | 1e-11 | ||
| 2jje_A | 449 | Crystal Structure Of T330s Mutant Of Rv3290c From M | 2e-11 | ||
| 2cin_A | 449 | Lysine Aminotransferase From M. Tuberculosis In The | 5e-11 | ||
| 2jjf_A | 449 | N328a Mutant Of M. Tuberculosis Rv3290c Length = 44 | 8e-11 | ||
| 3fqa_A | 427 | Gabaculien Complex Of Gabaculine Resistant Gsam Ver | 2e-10 | ||
| 2gsa_A | 432 | Crystal Structure Of Glutamate-1-Semialdehyde Amino | 2e-10 | ||
| 3fq7_A | 427 | Gabaculine Complex Of Gsam Length = 427 | 2e-10 | ||
| 2hoy_A | 432 | Inter-Subunit Signaling In Gsam Length = 432 | 3e-10 | ||
| 3fq8_A | 427 | M248i Mutant Of Gsam Length = 427 | 3e-10 | ||
| 2e7u_A | 424 | Crystal Structure Of Glutamate-1-Semialdehyde 2,1-A | 1e-09 | ||
| 2cfb_A | 411 | Glutamate-1-Semialdehyde 2,1-Aminomutase From Therm | 1e-09 | ||
| 3bs8_A | 438 | Crystal Structure Of Glutamate 1-Semialdehyde Amino | 2e-09 | ||
| 1ohv_A | 472 | 4-aminobutyrate-aminotransferase From Pig Length = | 1e-07 | ||
| 3k28_A | 429 | Crystal Structure Of A Glutamate-1-Semialdehyde Ami | 2e-07 | ||
| 4e77_A | 429 | 2.0a Crystal Structure Of A Glutamate-1-Semialdehyd | 4e-06 | ||
| 3ciw_A | 348 | X-Ray Structure Of The [fefe]-Hydrogenase Maturase | 4e-04 | ||
| 3iiz_A | 348 | X-Ray Structure Of The Fefe-Hydrogenase Maturase Hy | 4e-04 | ||
| 3cix_A | 348 | X-ray Structure Of The [fefe]-hydrogenase Maturase | 6e-04 | ||
| 3l44_A | 434 | Crystal Structure Of Bacillus Anthracis Heml-1, Glu | 7e-04 |
| >pdb|1R30|A Chain A, The Crystal Structure Of Biotin Synthase, An S- Adenosylmethionine-dependent Radical Enzyme Length = 369 | Back alignment and structure |
|
| >pdb|3DU4|A Chain A, Crystal Structure Of 7-Keto-8-Aminopelargonic Acid Bound 7,8- Diaminopelargonic Acid Synthase In Bacillus Subtilis Length = 448 | Back alignment and structure |
|
| >pdb|3DOD|A Chain A, Crystal Structure Of Plp Bound 7,8-diaminopelargonic Acid Synthase In Bacillus Subtilis Length = 448 | Back alignment and structure |
|
| >pdb|1QJ3|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase In Complex With 7-Keto-8-Aminopelargonic Acid Length = 429 | Back alignment and structure |
|
| >pdb|1DTY|A Chain A, Crystal Structure Of Adenosylmethionine-8-Amino-7-Oxonanoate Aminotransferase With Pyridoxal Phosphate Cofactor. Length = 429 | Back alignment and structure |
|
| >pdb|1S0A|A Chain A, Crystal Structure Of The Y17f Mutant Of 7,8- Diaminopelargonic Acid Synthase Length = 429 | Back alignment and structure |
|
| >pdb|1S07|A Chain A, Crystal Structure Of The R253a Mutant Of 7,8-Diaminopelargonic Acid Synthase Length = 429 | Back alignment and structure |
|
| >pdb|1MGV|A Chain A, Crystal Structure Of The R391a Mutant Of 7,8-Diaminopelargonic Acid Synthase Length = 429 | Back alignment and structure |
|
| >pdb|1S09|A Chain A, Crystal Structure Of The Y144f Mutant Of 7,8- Diaminopelargonic Acid Synthase Length = 429 | Back alignment and structure |
|
| >pdb|1S08|A Chain A, Crystal Structure Of The D147n Mutant Of 7,8- Diaminopelargonic Acid Synthase Length = 429 | Back alignment and structure |
|
| >pdb|1S06|A Chain A, Crystal Structure Of The R253k Mutant Of 7,8- Diaminopelargonic Acid Synthase Length = 429 | Back alignment and structure |
|
| >pdb|3TFT|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase (Bioa) From Mycobacterium Tuberculosis, Pre-Reaction Complex With A 3,6- Dihydropyrid-2-One Heterocycle Inhibitor Length = 457 | Back alignment and structure |
|
| >pdb|3BV0|A Chain A, Crystal Structure Of Plp Bound 7,8-Diaminopelargonic Acid Synthase In Mycobacterium Tuberculosis Length = 437 | Back alignment and structure |
|
| >pdb|3LV2|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis 7,8-Diaminopelargonic Acid Synthase In Complex With Substrate Analog Sinefungin Length = 462 | Back alignment and structure |
|
| >pdb|1V9F|A Chain A, Crystal Structure Of Catalytic Domain Of Pseudouridine Synthase Rlud From Escherichia Coli Length = 325 | Back alignment and structure |
|
| >pdb|1QYU|A Chain A, Structure Of The Catalytic Domain Of 23s Rrna Pseudouridine Synthase Rlud Length = 349 | Back alignment and structure |
|
| >pdb|1PRZ|A Chain A, Crystal Structure Of Pseudouridine Synthase Rlud Catalytic Module Length = 252 | Back alignment and structure |
|
| >pdb|3HMU|A Chain A, Crystal Structure Of A Class Iii Aminotransferase From Silicibacter Pomeroyi Length = 472 | Back alignment and structure |
|
| >pdb|3I5T|A Chain A, Crystal Structure Of Aminotransferase Prk07036 From Rhodobacter Sphaeroides Kd131 Length = 476 | Back alignment and structure |
|
| >pdb|4A6R|A Chain A, Crystal Structure Of The Omega Transaminase From Chromobacterium Violaceum In The Apo Form, Crystallised From Polyacrylic Acid Length = 459 | Back alignment and structure |
|
| >pdb|3N5M|A Chain A, Crystals Structure Of A Bacillus Anthracis Aminotransferase Length = 452 | Back alignment and structure |
|
| >pdb|4GRX|A Chain A, Structure Of An Omega-Aminotransferase From Paracoccus Denitrificans Length = 465 | Back alignment and structure |
|
| >pdb|3A8U|X Chain X, Crystal Structure Of Omega-Amino Acid:pyruvate Aminotransferase Length = 449 | Back alignment and structure |
|
| >pdb|3NUI|A Chain A, Crystal Structure Of Omega-Transferase From Vibrio Fluvialis Js17 Length = 478 | Back alignment and structure |
|
| >pdb|4E3Q|A Chain A, Pmp-Bound Form Of Aminotransferase Crystal Structure From Vibrio Fluvialis Length = 473 | Back alignment and structure |
|
| >pdb|2EH6|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase From Aquifex Aeolicus Vf5 Length = 375 | Back alignment and structure |
|
| >pdb|4E3R|A Chain A, Plp-Bound Aminotransferase Mutant Crystal Structure From Vibrio Fluvialis Length = 473 | Back alignment and structure |
|
| >pdb|3NX3|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase (Argd) From Campylobacter Jejuni Length = 395 | Back alignment and structure |
|
| >pdb|3I4J|A Chain A, Crystal Structure Of Aminotransferase, Class Iii From Deinococcus Radiodurans Length = 430 | Back alignment and structure |
|
| >pdb|2E54|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase From Thermotoga Maritima Length = 385 | Back alignment and structure |
|
| >pdb|3RUY|A Chain A, Crystal Structure Of The Ornithine-Oxo Acid Transaminase Rocd From Bacillus Anthracis Length = 392 | Back alignment and structure |
|
| >pdb|1VEF|A Chain A, Acetylornithine Aminotransferase From Thermus Thermophilus Hb8 Length = 395 | Back alignment and structure |
|
| >pdb|2ORD|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase (Ec 2.6.1.11) (Acoat) (Tm1785) From Thermotoga Maritima At 1.40 A Resolution Length = 397 | Back alignment and structure |
|
| >pdb|4ADB|A Chain A, Structural And Functional Study Of Succinyl-ornithine Transaminase From E. Coli Length = 406 | Back alignment and structure |
|
| >pdb|1SZK|A Chain A, The Structure Of Gamma-Aminobutyrate Aminotransferase Mutant: E211s Length = 426 | Back alignment and structure |
|
| >pdb|1SZS|A Chain A, The Structure Of Gamma-aminobutyrate Aminotransferase Mutant: I50q Length = 426 | Back alignment and structure |
|
| >pdb|1SF2|A Chain A, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase Length = 426 | Back alignment and structure |
|
| >pdb|4A0G|A Chain A, Structure Of Bifunctional Dapa Aminotransferase-Dtb Synthetase From Arabidopsis Thaliana In Its Apo Form. Length = 831 | Back alignment and structure |
|
| >pdb|1SZU|A Chain A, The Structure Of Gamma-Aminobutyrate Aminotransferase Mutant: V241a Length = 426 | Back alignment and structure |
|
| >pdb|2PB0|A Chain A, Structure Of Biosynthetic N-Acetylornithine Aminotransferase From Salmonella Typhimurium: Studies On Substrate Specificity And Inhibitor Binding Length = 420 | Back alignment and structure |
|
| >pdb|3Q8N|A Chain A, Crystal Structure Of 4-Aminobutyrate Transaminase From Mycobacterium Smegmatis Length = 453 | Back alignment and structure |
|
| >pdb|2CAN|A Chain A, Human Ornithine Aminotransferase Complexed With L-Canaline Length = 402 | Back alignment and structure |
|
| >pdb|1OAT|A Chain A, Ornithine Aminotransferase Length = 439 | Back alignment and structure |
|
| >pdb|2BYJ|A Chain A, Ornithine Aminotransferase Mutant Y85i Length = 439 | Back alignment and structure |
|
| >pdb|3OKS|A Chain A, Crystal Structure Of 4-Aminobutyrate Transaminase From Mycobacterium Smegmatis Length = 451 | Back alignment and structure |
|
| >pdb|2BYL|A Chain A, Structure Of Ornithine Aminotransferase Triple Mutant Y85i Y55a G320f Length = 439 | Back alignment and structure |
|
| >pdb|1D7R|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine Decarboxylase With 5pa Length = 433 | Back alignment and structure |
|
| >pdb|1M0N|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With 1- Aminocyclopentanephosphonate Length = 433 | Back alignment and structure |
|
| >pdb|1DGD|A Chain A, An Alkali Metal Ion Size-Dependent Switch In The Active Site Structure Of Dialkylglycine Decarboxylase Length = 432 | Back alignment and structure |
|
| >pdb|1Z3Z|A Chain A, The Crystal Structure Of A Dgd Mutant: Q52a Length = 431 | Back alignment and structure |
|
| >pdb|1Z7D|A Chain A, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii Length = 433 | Back alignment and structure |
|
| >pdb|1XPI|A Chain A, Crystal Structure Of The Catalytic Domain Of E. Coli Pseudouridine Synthase Rluc Length = 231 | Back alignment and structure |
|
| >pdb|3LG0|A Chain A, Structure Of Plasmodium Falciparum Ornithine Delta-Aminotransferase Length = 422 | Back alignment and structure |
|
| >pdb|4A0F|A Chain A, Structure Of Selenomethionine Substituted Bifunctional Dapa Aminotransferase-Dethiobiotin Synthetase From Arabidopsis Thaliana In Its Apo Form. Length = 831 | Back alignment and structure |
|
| >pdb|3R4T|A Chain A, Crystal Structure Of 4-Aminobutyrate Aminotransferase Gabt From Mycobacterium Marinum Covalently Bound To Pyridoxal Phosphate Length = 467 | Back alignment and structure |
|
| >pdb|1V9K|A Chain A, The Crystal Structure Of The Catalytic Domain Of Pseudouridine Synthase Rluc From Escherichia Coli Length = 228 | Back alignment and structure |
|
| >pdb|2EO5|A Chain A, Crystal Structure Of 4-Aminobutyrate Aminotransferase From Sulfolobus Tokodaii Strain7 Length = 419 | Back alignment and structure |
|
| >pdb|4FFC|A Chain A, Crystal Structure Of A 4-Aminobutyrate Aminotransferase (Gabt) From Mycobacterium Abscessus Length = 453 | Back alignment and structure |
|
| >pdb|2I82|A Chain A, Crystal Structure Of Pseudouridine Synthase Rlua: Indirect Sequence Readout Through Protein-induced Rna Structure Length = 217 | Back alignment and structure |
|
| >pdb|2ZUK|A Chain A, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam Racemase From Achromobacter Obae Complexed With Epsilon Caprolactam (Different Binding Mode) Length = 439 | Back alignment and structure |
|
| >pdb|3DXW|A Chain A, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam Racemase From Achromobacter Obae Complexed With Epsilon Caprolactam Length = 452 | Back alignment and structure |
|
| >pdb|4ATP|A Chain A, Structure Of Gaba-Transaminase A1r958 From Arthrobacter Aurescens In Complex With Plp Length = 456 | Back alignment and structure |
|
| >pdb|2JJH|A Chain A, E243 Mutant Of M. Tuberculosis Rv3290c Length = 449 | Back alignment and structure |
|
| >pdb|2JJE|A Chain A, Crystal Structure Of T330s Mutant Of Rv3290c From M. Tuberculosis Length = 449 | Back alignment and structure |
|
| >pdb|2CIN|A Chain A, Lysine Aminotransferase From M. Tuberculosis In The Internal Aldimine Form Length = 449 | Back alignment and structure |
|
| >pdb|2JJF|A Chain A, N328a Mutant Of M. Tuberculosis Rv3290c Length = 449 | Back alignment and structure |
|
| >pdb|3FQA|A Chain A, Gabaculien Complex Of Gabaculine Resistant Gsam Version Length = 427 | Back alignment and structure |
|
| >pdb|2GSA|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase (Aminotransferase, Wild-Type Form) Length = 432 | Back alignment and structure |
|
| >pdb|3FQ7|A Chain A, Gabaculine Complex Of Gsam Length = 427 | Back alignment and structure |
|
| >pdb|2HOY|A Chain A, Inter-Subunit Signaling In Gsam Length = 432 | Back alignment and structure |
|
| >pdb|3FQ8|A Chain A, M248i Mutant Of Gsam Length = 427 | Back alignment and structure |
|
| >pdb|2E7U|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde 2,1-Aminomutase From Thermus Thermophilus Hb8 Length = 424 | Back alignment and structure |
|
| >pdb|2CFB|A Chain A, Glutamate-1-Semialdehyde 2,1-Aminomutase From Thermosynechococcus Elongatus Length = 411 | Back alignment and structure |
|
| >pdb|3BS8|A Chain A, Crystal Structure Of Glutamate 1-Semialdehyde Aminotransferase Complexed With Pyridoxamine-5'-Phosphate From Bacillus Subtilis Length = 438 | Back alignment and structure |
|
| >pdb|1OHV|A Chain A, 4-aminobutyrate-aminotransferase From Pig Length = 472 | Back alignment and structure |
|
| >pdb|3K28|A Chain A, Crystal Structure Of A Glutamate-1-Semialdehyde Aminotransferase From Bacillus Anthracis With Bound Pyridoxal 5'phosphate Length = 429 | Back alignment and structure |
|
| >pdb|4E77|A Chain A, 2.0a Crystal Structure Of A Glutamate-1-Semialdehyde Aminotransferase From Yersinia Pestis Co92 Length = 429 | Back alignment and structure |
|
| >pdb|3CIW|A Chain A, X-Ray Structure Of The [fefe]-Hydrogenase Maturase Hyde From Thermotoga Maritima Length = 348 | Back alignment and structure |
|
| >pdb|3IIZ|A Chain A, X-Ray Structure Of The Fefe-Hydrogenase Maturase Hyde From T. Maritima In Complex With S-Adenosyl-L-Methionine Length = 348 | Back alignment and structure |
|
| >pdb|3CIX|A Chain A, X-ray Structure Of The [fefe]-hydrogenase Maturase Hyde From Thermotoga Maritima In Complex With Thiocyanate Length = 348 | Back alignment and structure |
|
| >pdb|3L44|A Chain A, Crystal Structure Of Bacillus Anthracis Heml-1, Glutamate Semialdehyde Aminotransferase Length = 434 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A* Length = 429 | Back alignment and structure |
|---|
Score = 570 bits (1472), Expect = 0.0
Identities = 141/401 (35%), Positives = 218/401 (54%), Gaps = 15/401 (3%)
Query: 248 LITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLS 307
LI G+R +D +SSWW + G+++ +N A+K+Q++ + HVM +TH P I+L KL
Sbjct: 37 LILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHAPAIELCRKLV 96
Query: 308 SLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVT 367
++T L F G+ AVEVA+KM+ YW KG +++F+ +N YHG+T GA++V
Sbjct: 97 AMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKG-EARQRFLTFRNGYHGDTFGAMSVC 155
Query: 368 NIQS-FKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAII 426
+ + ++ L + P SR E + L+ + ++IAA+I
Sbjct: 156 DPDNSMHSLWKGYLPENLFAPAPQSRM------DGEWDERDMVGFARLMAAHRHEIAAVI 209
Query: 427 IEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDF 486
IEP+VQ AGGM MY +LK +R+IC+ I LIADEIA G GRTGK FACEHAEI PD
Sbjct: 210 IEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHAEIAPDI 269
Query: 487 LCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN 546
LCL K +TGG + LS +TT ++ +I F+H ++ GNPLAC AA A+L I
Sbjct: 270 LCLGKALTGGTMTLSATLTTREVAETISN-GEAGCFMHGPTFMGNPLACAAANASLAILE 328
Query: 547 KDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVA 606
+ Q+++ ++ + L + + R G I +
Sbjct: 329 SGDWQQQVADIEVQLREQLAPARDAEMVADVRVLGAIGVVETTHPVN------MAALQKF 382
Query: 607 ALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNE 647
++ + +RP G +YLMPPYI+ ++Q +T+A+ + +
Sbjct: 383 FVEQGVWIRPFGKLIYLMPPYIILPQQLQRLTAAVNRAVQD 423
|
| >3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} PDB: 3drd_A 3du4_A* Length = 448 | Back alignment and structure |
|---|
Score = 568 bits (1465), Expect = 0.0
Identities = 148/408 (36%), Positives = 230/408 (56%), Gaps = 9/408 (2%)
Query: 248 LITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLS 307
+ +GK Y D SS W+N+ GH ++ A+K QL K+ H L +T+ P +L+E L
Sbjct: 38 VKDINGKEYYDGFSSVWLNVHGHRKKELDDAIKKQLGKIAHSTLLGMTNVPATQLAETLI 97
Query: 308 SLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVT 367
++ KL FY GA A+E+ALKM+F YW N G K+KFI ++N YHG+T+GA++V
Sbjct: 98 DISPKKLTRVFYSDSGAEAMEIALKMAFQYWKNIGKPEKQKFIAMKNGYHGDTIGAVSVG 157
Query: 368 NIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIII 427
+I+ F +Y L+ ++Y P G+ +C +L LL+++H +IAA+ I
Sbjct: 158 SIELFHHVYGPLMFESYKAPIPYVYRSESGDPDECRDQCLR-ELAQLLEEHHEEIAALSI 216
Query: 428 EPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL 487
E +VQ A GMI+ YL VRE+C Y++ +I DE+A G GRTGK FACEH + PD +
Sbjct: 217 ESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTGKMFACEHENVQPDLM 276
Query: 488 CLSKGITGGYLPLSLVMTTDKIYNSIYY-KNNINIFLHSHSYSGNPLACCAALATLEIFN 546
KGITGGYLP+++ T+ IY + Y N+ F H HSY+GN L C AL L +F
Sbjct: 277 AAGKGITGGYLPIAVTFATEDIYKAFYDDYENLKTFFHGHSYTGNQLGCAVALENLALFE 336
Query: 547 KDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFS------ 600
+NI++++++ KK+ L L P + + RQ G + + ++ E E +
Sbjct: 337 SENIVEQVAEKSKKLHFLLQDLHALPHVGDIRQLGFMCGAE-LVRSKETKEPYPADRRIG 395
Query: 601 KKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNEL 648
K + + +L RP+G+ + +PP E+ M + + Q +E+
Sbjct: 396 YKVSLKMRELGMLTRPLGDVIAFLPPLASTAEELSEMVAIMKQAIHEV 443
|
| >3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A* Length = 457 | Back alignment and structure |
|---|
Score = 568 bits (1466), Expect = 0.0
Identities = 125/400 (31%), Positives = 199/400 (49%), Gaps = 18/400 (4%)
Query: 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQY 312
LDA+SSWW + GH + +++AL QL + HVM LTH+P +L++ L +T
Sbjct: 74 PIEVLDAMSSWWTAIHGHGHPALDQALTTQLRVMNHVMFGGLTHEPAARLAKLLVDITPA 133
Query: 313 KLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQS- 371
L F+ G+ +VEVA KM+ YW +G K++ + + YHG+T A+++ +
Sbjct: 134 GLDTVFFSDSGSVSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGG 193
Query: 372 FKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLV 431
++T +L E L ++ ++AA+++EP+V
Sbjct: 194 MHSLWTDVLAAQVFAPQVPRDY----------DPAYSAAFEAQLAQHAGELAAVVVEPVV 243
Query: 432 QCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSK 491
Q AGGM +D YL +R+IC Y + LI DEIA G GRTG FA +HA + PD +C+ K
Sbjct: 244 QGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALFAADHAGVSPDIMCVGK 303
Query: 492 GITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNIL 551
+TGGYL L+ + T + ++I +H ++ NPLAC ++A++E+ +
Sbjct: 304 ALTGGYLSLAATLCTADVAHTISA-GAAGALMHGPTFMANPLACAVSVASVELLLGQDWR 362
Query: 552 QRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNE 611
RI++ +T L + P + + R G I + + P AAL
Sbjct: 363 TRITELAAGLTAGLDTARALPAVTDVRVCGAIGVIE--CDRPVD----LAVATPAALDRG 416
Query: 612 LLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNELDEV 651
+ LRP N VY MPPYI EI +TSA+ + + +
Sbjct: 417 VWLRPFRNLVYAMPPYICTPAEITQITSAMVEVARLVGSL 456
|
| >1r30_A Biotin synthase; SAM radical protein, TIM barrel, FES cluster, transferase; HET: SAM DTB; 3.40A {Escherichia coli} SCOP: c.1.28.1 Length = 369 | Back alignment and structure |
|---|
Score = 521 bits (1343), Expect = e-178
Identities = 175/305 (57%), Positives = 231/305 (75%)
Query: 648 LDEVINLFNLPFNDLLFRAQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHYNT 707
L +V LF P DLLF AQ+VHR++FD +++++ LLSIKTG C EDC YCPQS+ Y T
Sbjct: 32 LSQVTELFEKPLLDLLFEAQQVHRQHFDPRQVQVSTLLSIKTGACPEDCKYCPQSSRYKT 91
Query: 708 EITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETC 767
+ A +++ +E V+ +A+KAK+ G+TRFCMGAAW+ +RD+ +E M+ VK +GLE C
Sbjct: 92 GLEAERLMEVEQVLESARKAKAAGSTRFCMGAAWKNPHERDMPYLEQMVQGVKAMGLEAC 151
Query: 768 LTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINIC 827
+TLG L+E+QA RL GLDYYNHNLDTSP+ YG+II+TR Y+ RL+TL+ VR+ GI +C
Sbjct: 152 MTLGTLSESQAQRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVC 211
Query: 828 CGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIA 887
GGI+GL E+ RA L+ QLANL PESVPIN LV++KGTPL + +D +FIRTIA
Sbjct: 212 SGGIVGLGETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAFDFIRTIA 271
Query: 888 VARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLLKKL 947
VARI MPTS +R+SAGR++M E TQA CF+AGANSIFYG KLLTT N + + D +L +KL
Sbjct: 272 VARIMMPTSYVRLSAGREQMNEQTQAMCFMAGANSIFYGCKLLTTPNPEEDKDLQLFRKL 331
Query: 948 GINTR 952
G+N +
Sbjct: 332 GLNPQ 336
|
| >4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A* Length = 831 | Back alignment and structure |
|---|
Score = 511 bits (1316), Expect = e-168
Identities = 95/453 (20%), Positives = 185/453 (40%), Gaps = 54/453 (11%)
Query: 252 SGKRYLDAISSWWVNLFGHS-NSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLT 310
S + DA +SWW + + + + + + HVM ++P +K +E L
Sbjct: 378 SLSQQFDACASWWTQGPDPTFQAELAREMGYTAARFGHVMFPENVYEPALKCAELLLDGV 437
Query: 311 -QYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLN---------KKKFICLQNSYHGET 360
+ ++ +G++A+E+ALKM+F + K I L+ SYHG+T
Sbjct: 438 GKGWASRVYFSDNGSTAIEIALKMAFRKFCVDHNFCEATEEEKHIVVKVIALRGSYHGDT 497
Query: 361 LGALAVTNIQSFKEIYTSLL----------------NKTYIITTPDSRNINKGNSANEIA 404
LGA+ + N ++ I+ P+S + +
Sbjct: 498 LGAMEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWNISLPESFSEIAPEYGTFTS 557
Query: 405 RCAIFDL--------------------EILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIY 444
R IFD E + + A+IIEP++ AGGM M D ++
Sbjct: 558 RDEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLF 617
Query: 445 LKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVM 504
+++ C N I +I DE+ G R G E PD C +K +TGG +PL++ +
Sbjct: 618 QRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELLGCKPDIACFAKLLTGGMVPLAVTL 677
Query: 505 TTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQR---ISQDMKKI 561
TD +++S + + LH HSYS + + C A ++ F + ++++
Sbjct: 678 ATDAVFDSFSGDSKLKALLHGHSYSAHAMGCATAAKAIQWFKDPETNHNITSQGKTLREL 737
Query: 562 --TKALTSLITHPKIINFRQKGMIWAFDV--IIEDPEQIETFSKKFFVAALKNELLLRPI 617
+ + + +H + G ++A ++ + ++K + ++ + RP+
Sbjct: 738 WDEELVQQISSHSAVQRVVVIGTLFALELKADASNSGYASLYAKSLLIMLREDGIFTRPL 797
Query: 618 GNTVYLMPPYILNKNEIQHMTSAIFQTFNELDE 650
GN +YLM + + + + +++ E +
Sbjct: 798 GNVIYLMCGPCTSPEICRRLLTKLYKRLGEFNR 830
|
| >3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis} Length = 452 | Back alignment and structure |
|---|
Score = 400 bits (1030), Expect = e-130
Identities = 118/415 (28%), Positives = 192/415 (46%), Gaps = 19/415 (4%)
Query: 248 LITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLS 307
+ GKRYLD +S W G+ + +A QL L + +S +H+P IKL+EKL+
Sbjct: 43 VEDIQGKRYLDGMSGLWCVNSGYGRKELAEAAYKQLQTLSYFPMS-QSHEPAIKLAEKLN 101
Query: 308 SLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVT 367
F+ + G+ A E A K++ Y+ KG ++ KF+ YHG T+ +A T
Sbjct: 102 EWLG-GEYVIFFSNSGSEANETAFKIARQYYAQKGEPHRYKFMSRYRGYHGNTMATMAAT 160
Query: 368 NIQSFKEIYTSLLNKTYIITTPDS-RNINKGNSANEIARCAIFDLE-ILLKKNHNKIAAI 425
+ Y + +T PD R C +++ ++ + IAA
Sbjct: 161 GQAQRRYQYEPFASGFLHVTPPDCYRMPGIERENIYDVECVK-EVDRVMTWELSETIAAF 219
Query: 426 IIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPD 485
I+EP + GG++M Y+K V E C + LI+DE+ G GRTGK F + ++ PD
Sbjct: 220 IMEP-IITGGGILMAPQDYMKAVHETCQKHGALLISDEVICGFGRTGKAFGFMNYDVKPD 278
Query: 486 FLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIF 545
+ ++KGIT YLPLS +IY + K F H +++ GNP AC AL LEI
Sbjct: 279 IITMAKGITSAYLPLSATAVKREIYEAFKGKGEYEFFRHINTFGGNPAACALALKNLEII 338
Query: 546 NKDNILQRISQDMKKITKALTSLIT-HPKIINFRQKGMIWAFDVIIEDPEQIETF----S 600
+N+++R +Q + + L I HP + + R KG++ + ++ D E E
Sbjct: 339 ENENLIERSAQMGSLLLEQLKEEIGEHPLVGDIRGKGLLVGIE-LVNDKETKEPIDNDKI 397
Query: 601 KKFFVAALKNELLLRPIG-------NTVYLMPPYILNKNEIQHMTSAIFQTFNEL 648
A + L++ G N + L PP +++ EI + + +
Sbjct: 398 ASVVNACKEKGLIIGRNGMTTAGYNNILTLAPPLVISSEEIAFVIGTLKTAMERI 452
|
| >3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida} Length = 449 | Back alignment and structure |
|---|
Score = 380 bits (978), Expect = e-123
Identities = 104/408 (25%), Positives = 187/408 (45%), Gaps = 7/408 (1%)
Query: 248 LITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLS 307
L+ G++ D++S W GH+ I +A+ QL+ L++ H +L+EK++
Sbjct: 44 LVDDKGRKVYDSLSGLWTCGAGHTRKEIQEAVAKQLSTLDYSPGFQYGHPLSFQLAEKIT 103
Query: 308 SLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVT 367
LT L H F+ G+ A+KM YW KG K K I YHG + ++
Sbjct: 104 DLTPGNLNHVFFTDSGSECALTAVKMVRAYWRLKGQATKTKMIGRARGYHGVNIAGTSLG 163
Query: 368 NIQSFKEIYTSLLNKTYIITTPDS-RNINKGNSANEIARCAIFDLE-ILLKKNHNKIAAI 425
+ ++++ + + N E +L ++ + + IAA+
Sbjct: 164 GVNGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPKEGGIALADELLKLIELHDASNIAAV 223
Query: 426 IIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPD 485
+EP + + G+++ YLK REICN +NI L+ DE+ G GRTG F + + PD
Sbjct: 224 FVEP-LAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRTGSMFGADSFGVTPD 282
Query: 486 FLCLSKGITGGYLPLSLVMTTDKIYNSIY---YKNNINIFLHSHSYSGNPLACCAALATL 542
+C++K +T G +P+ V+ + +IY + F H ++YS +P+AC A LA L
Sbjct: 283 LMCIAKQVTNGAIPMGAVIASTEIYQTFMNQPTPEYAVEFPHGYTYSAHPVACAAGLAAL 342
Query: 543 EIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKK 602
+ K+N++Q +++ KAL + +I+ R G+ A I +
Sbjct: 343 CLLQKENLVQSVAEVAPHFEKALHGIKGAKNVIDIRNFGLAGAIQ-IAPRDGDAIVRPFE 401
Query: 603 FFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNELDE 650
+A K +R G+T+ P + ++ + A+ + N+L +
Sbjct: 402 AGMALWKAGFYVRFGGDTLQFGPTFNSKPQDLDRLFDAVGEVLNKLLD 449
|
| >3nui_A Pyruvate transaminase; amino transferase, transferase; 2.00A {Vibrio fluvialis} Length = 478 | Back alignment and structure |
|---|
Score = 372 bits (958), Expect = e-119
Identities = 100/438 (22%), Positives = 193/438 (44%), Gaps = 19/438 (4%)
Query: 226 LIHPKNNLKLKWRINLPDDISK-----LITFSGKRYLDAISSWWVNLFGHSNSYINKALK 280
++ ++ ++ ++ +G+RYLDA S W + G + + A K
Sbjct: 29 SLYGFTDMP-SLHQRGTVVVTHGEGPYIVDVNGRRYLDANSGLWNMVAGFDHKGLIDAAK 87
Query: 281 NQLNKLE-HVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWY 339
Q + + + LSEKL ++ + G FY + G+ A + +KM +
Sbjct: 88 AQYERFPGYHAFFGRMSDQTVMLSEKLVEVSPFDSGRVFYTNSGSEANDTMVKMLWFLHA 147
Query: 340 NKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDS-RNINKGN 398
+G K+K + N+YHG T + ++T + ++ L +T P R +G
Sbjct: 148 AEGKPQKRKILTRWNAYHGVTAVSASMTGK-PYNSVFGLPLPGFVHLTCPHYWRYGEEGE 206
Query: 399 SANEIARCAIFDLE-ILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNI 457
+ + +LE + ++ + IA EP V AGG+I Y + + I Y+I
Sbjct: 207 TEEQFVARLARELEETIQREGADTIAGFFAEP-VMGAGGVIPPAKGYFQAILPILRKYDI 265
Query: 458 HLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIY-YK 516
+I+DE+ G GRTG + C + PD + SK +T G+ P+ V+ ++ +
Sbjct: 266 PVISDEVICGFGRTGNTWGCVTYDFTPDAIISSKNLTAGFFPMGAVILGPELSKRLETAI 325
Query: 517 NNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIIN 576
I F H + SG+P+ C AL +++ + + + + + + + L + P I
Sbjct: 326 EAIEEFPHGFTASGHPVGCAIALKAIDVVMNEGLAENVRRLAPRFEERLKHIAERPNIGE 385
Query: 577 FRQKGMIWAFDVIIEDPEQIETF------SKKFFVAALKNELLLRPIGNTVYLMPPYILN 630
+R G +WA + ++D F S++ L+ RP+G +V L PP+IL
Sbjct: 386 YRGIGFMWALE-AVKDKASKTPFDGNLSVSERIANTCTDLGLICRPLGQSVVLCPPFILT 444
Query: 631 KNEIQHMTSAIFQTFNEL 648
+ ++ M + + +++
Sbjct: 445 EAQMDEMFDKLEKALDKV 462
|
| >3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A* Length = 460 | Back alignment and structure |
|---|
Score = 349 bits (897), Expect = e-111
Identities = 92/442 (20%), Positives = 182/442 (41%), Gaps = 21/442 (4%)
Query: 226 LIHPKNNLKLKWRINLPDDI------SKLITFSGKRYLDAISSWWVNLFGHSNSYINKAL 279
HP ++ R P I + +G++ +DA + + G+ I A+
Sbjct: 17 FFHPSTHMGTHARGESPTRIMAGGEGVTVWDNNGRKSIDAFAGLYCVNVGYGRQKIADAI 76
Query: 280 KNQLNKLEHV-MLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYW 338
Q L + + I L++ + + ++G G+ A E +K+ ++Y
Sbjct: 77 ATQAKNLAYYHAYVGHGTEASITLAKMIIDRAPKGMSRVYFGLSGSDANETNIKLIWYYN 136
Query: 339 YNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDS-RNINKG 397
G KKK I YHG + ++T + F + P R ++
Sbjct: 137 NVLGRPEKKKIISRWRGYHGSGVMTGSLTGLDLFHNAFDLPRAPVLHTEAPYYFRRTDRS 196
Query: 398 NSANEIARCAIFDLE-ILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYN 456
S + ++ LE ++L + IAA I EP + GG++ + Y + ++ + Y+
Sbjct: 197 MSEEQFSQHCADKLEEMILAEGPETIAAFIGEP-ILGTGGIVPPPAGYWEKIQAVLKKYD 255
Query: 457 IHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIY-Y 515
+ L+ADE+ G GR G F +H I PD + ++KG+T Y PLS V+ D+++ +
Sbjct: 256 VLLVADEVVTGFGRLGTMFGSDHYGIKPDLITIAKGLTSAYAPLSGVIVADRVWQVLVQG 315
Query: 516 KNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALT-SLITHPKI 574
+ + H +YS +P+ A +A LE+ ++ +++ + L ++ H +
Sbjct: 316 SDKLGSLGHGWTYSAHPICVAAGVANLELIDEMDLVTNAGETGAYFRAELAKAVGGHKNV 375
Query: 575 INFRQKGMIWAFDVIIEDPEQIETF------SKKFFVAALKNELLLRPI--GNTVYLMPP 626
R GM+ A + + D + F + A + ++ R + G+ + PP
Sbjct: 376 GEVRGDGMLAAVE-FVADKDDRVFFDASQKIGPQVATALAASGVIGRAMPQGDILGFAPP 434
Query: 627 YILNKNEIQHMTSAIFQTFNEL 648
L + + + S +
Sbjct: 435 LCLTREQADIVVSKTADAVKSV 456
|
| >4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A* Length = 459 | Back alignment and structure |
|---|
Score = 328 bits (842), Expect = e-103
Identities = 104/415 (25%), Positives = 188/415 (45%), Gaps = 15/415 (3%)
Query: 248 LITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHV-MLSNLTHKPVIKLSEKL 306
L G + +D ++ W G+ +A + Q+ +L TH V++LS L
Sbjct: 44 LWDSEGNKIIDGMAGLWCVNVGYGRKDFAEAARRQMEELPFYNTFFKTTHPAVVELSSLL 103
Query: 307 SSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAV 366
+ +T FY + G+ +V+ ++M YW +G KK I N YHG T+G ++
Sbjct: 104 AEVTPAGFDRVFYTNSGSESVDTMIRMVRRYWDVQGKPEKKTLIGRWNGYHGSTIGGASL 163
Query: 367 TNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLE-ILLKKNHNKIAAI 425
++ E + I P K + +E A LE +L+ +K+AA
Sbjct: 164 GGMKYMHEQGDLPIPGMAHIEQPWWYKHGKDMTPDEFGVVAARWLEEKILEIGADKVAAF 223
Query: 426 IIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPD 485
+ EP +Q AGG+I+ + Y + IC Y++ L+ADE+ G GRTG++F +H PD
Sbjct: 224 VGEP-IQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGRTGEWFGHQHFGFQPD 282
Query: 486 FLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIF 545
+KG++ GYLP+ V ++ + F H +YSG+P+ A A +
Sbjct: 283 LFTAAKGLSSGYLPIGAVFVGKRVAEGL---IAGGDFNHGFTYSGHPVCAAVAHANVAAL 339
Query: 546 NKDNILQRISQDM-KKITKALT-SLITHPKIINFRQKGMIWAFDVIIEDPEQIETF---- 599
+ I+QR+ D+ + K + + + R GM+ AF ++++ + E F
Sbjct: 340 RDEGIVQRVKDDIGPYMQKRWRETFSRFEHVDDVRGVGMVQAFT-LVKNKAKRELFPDFG 398
Query: 600 --SKKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNELDEVI 652
+N L++R G+ + PP ++ + E+ M + + E ++ +
Sbjct: 399 EIGTLCRDIFFRNNLIMRACGDHIVSAPPLVMTRAEVDEMLAVAERCLEEFEQTL 453
|
| >3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2} Length = 476 | Back alignment and structure |
|---|
Score = 327 bits (840), Expect = e-102
Identities = 105/412 (25%), Positives = 193/412 (46%), Gaps = 14/412 (3%)
Query: 253 GKRYLDAISSWW-VNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQ 311
G+R +D + W + G+ I A+ +Q L + + P +L+EK+++LT
Sbjct: 53 GRRLIDGPAGMWCAQV-GYGRREIVDAMAHQAMVLPYASPWYMATSPAARLAEKIATLTP 111
Query: 312 YKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQS 371
L F+ + G++AV+ AL+ S Y G KK+ I + YHG T A T
Sbjct: 112 GDLNRIFFTTGGSTAVDSALRFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAACTGRTG 171
Query: 372 FKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLE-ILLKKNHNKIAAIIIEPL 430
+ ++ +++P+ R+ S + + E + + IAA + EP
Sbjct: 172 NWPNFDIAQDRISFLSSPNPRH-AGNRSQEAFLDDLVQEFEDRIESLGPDTIAAFLAEP- 229
Query: 431 VQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHA-EIWPDFLCL 489
+ +GG+I+ + Y + IC ++I I+DE+ G GR G++FA E + PD +
Sbjct: 230 ILASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFGRCGEWFASEKVFGVVPDIITF 289
Query: 490 SKGITGGYLPLSLVMTTDKIYNSIYYKNNINI-FLHSHSYSGNPLACCAALATLEIFNKD 548
+KG+T GY+PL + ++ + I +N F + ++YS P+AC AALA +E+ ++
Sbjct: 290 AKGVTSGYVPLGGLAISEAVLARISGENAKGSWFTNGYTYSNQPVACAAALANIELMERE 349
Query: 549 NILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETF------SKK 602
I+ + + AL SL P + R G++ + DP + + + K
Sbjct: 350 GIVDQAREMADYFAAALASLRDLPGVAETRSVGLVGCVQ-CLLDPTRADGTAEDKAFTLK 408
Query: 603 FFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNELDEVINL 654
+ L++RP+G+ + PP I+++ +I M + + Q E+ L
Sbjct: 409 IDERCFELGLIVRPLGDLCVISPPLIISRAQIDEMVAIMRQAITEVSAAHGL 460
|
| >3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A* Length = 348 | Back alignment and structure |
|---|
Score = 322 bits (827), Expect = e-102
Identities = 68/323 (21%), Positives = 133/323 (41%), Gaps = 25/323 (7%)
Query: 644 TFNELDEVINLFNLPFNDLLFRAQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQST 703
T L E +++ + FN+ LF+ R+ + +E+ + ++ + C ++C YC
Sbjct: 16 TREVLKEALSINDRGFNEALFKLADEIRRKYVGDEVHIRAIIEF-SNVCRKNCLYCGLR- 73
Query: 704 HYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIG 763
N + + ++ E ++ A+ A GA + + D+ I +++ E+KK+G
Sbjct: 74 RDNKNLKRYR-MTPEEIVERARLAVQFGAKTIVLQSGEDPYXMPDV--ISDIVKEIKKMG 130
Query: 764 LETCLTLGMLNENQAYRLKKVGLDYYNHNLDTS-PKLYGDIISTRDYENRLNTLKNVRNV 822
+ L+LG + K+ G D Y +T+ P L+ + +ENRLN L ++ +
Sbjct: 131 VAVTLSLGEWPREYYEKWKEAGADRYLLRHETANPVLHRKLRPDTSFENRLNCLLTLKEL 190
Query: 823 GINICCGGIIGLS-ESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLE 881
G G ++GL ++ D + + L + + V I + TPL D
Sbjct: 191 GYETGAGSMVGLPGQTIDDLVDDLLFLKEHDF--DMVGIGPFIPHPDTPLANEKKGDFTL 248
Query: 882 FIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIF--------------YGD 927
++ +A+ RI +P S I + + + GAN I Y
Sbjct: 249 TLKMVALTRILLPDSNIPATTAMGTIVPGGREITLRCGANVIMPNWTPSPYRQLYQLYPG 308
Query: 928 KLLTTDNTKTNDDS--KLLKKLG 948
K+ + K+++ LG
Sbjct: 309 KICVFEKDTACIPCVMKMIELLG 331
|
| >1v9f_A Ribosomal large subunit pseudouridine synthase D; RNA binding, lyase; 1.70A {Escherichia coli} SCOP: d.265.1.3 PDB: 2ist_A 1qyu_A 1prz_A Length = 325 | Back alignment and structure |
|---|
Score = 321 bits (824), Expect = e-102
Identities = 102/238 (42%), Positives = 142/238 (59%), Gaps = 23/238 (9%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I LDI+YED +III+NK LVVHP GN GT+ + LL YP + +VPRAGIVHRLDK+
Sbjct: 81 IPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHRLDKD 140
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAK++ + LV L+ + R+Y A+ G G ++ I R+P R M V
Sbjct: 141 TTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISRHPTKRTHMAV 200
Query: 147 SKNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNL 203
KPA+T+Y E + + +R L+TGRTHQIRVHM + H +VGD +
Sbjct: 201 HP--MGKPAVTHYRIMEHF-------RVHTRLRLRLETGRTHQIRVHMAHITHPLVGDPV 251
Query: 204 YG------KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLIT 250
YG K S++ I F+RQALHA L L HP + ++++W +P D+ +LI
Sbjct: 252 YGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELIE 309
|
| >3t7v_A Methylornithine synthase PYLB; TIM-barrel fold, mutase, [4Fe-4S]-cluster, SAM, lysine, transferase; HET: SAM MD0; 1.50A {Methanosarcina barkeri} Length = 350 | Back alignment and structure |
|---|
Score = 320 bits (822), Expect = e-101
Identities = 54/339 (15%), Positives = 124/339 (36%), Gaps = 27/339 (7%)
Query: 629 LNKNEIQHMTSAIFQ----TFNELDEVINLFNLPFNDLLFRAQKVHRKYFDANEIELAVL 684
+ +E + + + T N+L +++L + + L+ A + R ++ N + L
Sbjct: 5 MALDEFDSLGDKVIEGYQLTDNDLRTLLSLESKEGLERLYSAARKVRDHYFGNRVFLNCF 64
Query: 685 LSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWREL 744
+ C C +C + L++E + + K G +
Sbjct: 65 IYFS-TYCKNQCSFCYYNCRNEINR---YRLTMEEIKETCKTLKGAGFHMVDLTMGEDPY 120
Query: 745 KDRDLDNIENMICEVKKI-GLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTS-PKLYGD 802
D + ++ VK+ GL ++ G+++ + ++ G ++ +T +LY
Sbjct: 121 YYEDPNRFVELVQIVKEELGLPIMISPGLMDNATLLKAREKGANFLALYQETYDTELYRK 180
Query: 803 IISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINN 862
+ + ++ R+N + + G + G + G+ + + ++ P+ V +
Sbjct: 181 LRVGQSFDGRVNARRFAKQQGYCVEDGILTGVGNDIESTILSLRGMSTN--DPDMVRVMT 238
Query: 863 LVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANS 922
+ +GTPL G L ++ I+V R+ P I S + + AGAN
Sbjct: 239 FLPQEGTPLEGFRDKSNLSELKIISVLRLMFPKRLIPASLDLEGIDG--MVLRLNAGANI 296
Query: 923 IFYG-------------DKLLTTDNTKTNDDSKLLKKLG 948
+ D+ L + + L+ +G
Sbjct: 297 VTSILPPDSQLEGVANYDRDLEERDRDIKSVVRRLEIMG 335
|
| >3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi} Length = 472 | Back alignment and structure |
|---|
Score = 322 bits (828), Expect = e-100
Identities = 112/437 (25%), Positives = 194/437 (44%), Gaps = 23/437 (5%)
Query: 226 LIHPKNNLKLKWRINLPDDISK-----LITFSGKRYLDAISSWWVNLFGHSNSYINKALK 280
+HP + I++ L G+ LDA++ W G+ + +
Sbjct: 23 HLHPFSANN-ALGEEGTRVITRARGVWLNDSEGEEILDAMAGLWCVNIGYGRDELAEVAA 81
Query: 281 NQLNKLEHV-MLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWY 339
Q+ +L + TH P I L++KL+ L L H F+ G+ A + ++M YW
Sbjct: 82 RQMRELPYYNTFFKTTHVPAIALAQKLAELAPGDLNHVFFAGGGSEANDTNIRMVRTYWQ 141
Query: 340 NKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNS 399
NKG K I +N+YHG T+ + A+ + + + +I +
Sbjct: 142 NKGQPEKTVIISRKNAYHGSTVASSALGGMAGMHAQSGLIPDVHHINQPNWWAEGGDMDP 201
Query: 400 ANEIARCAIFDLE-ILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIH 458
A +LE +L+ N++AA I EP VQ AGG+I+ Y ++ IC+ Y+I
Sbjct: 202 EEFGLARAR-ELEEAILELGENRVAAFIAEP-VQGAGGVIVAPDSYWPEIQRICDKYDIL 259
Query: 459 LIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNN 518
LIADE+ G GRTG +F + I P + ++KG++ GY P+ + D++ + I
Sbjct: 260 LIADEVICGFGRTGNWFGTQTMGIRPHIMTIAKGLSSGYAPIGGSIVCDEVAHVI----G 315
Query: 519 INIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKI-TKALTSLITHPKIINF 577
+ F H ++YSG+P+A AL L I ++NIL + + +L HP +
Sbjct: 316 KDEFNHGYTYSGHPVAAAVALENLRILEEENILDHVRNVAAPYLKEKWEALTDHPLVGEA 375
Query: 578 RQKGMIWAFDVIIEDPEQIETF-------SKKFFVAALKNELLLRPIGNTVYLMPPYILN 630
+ GM+ + + + F N L++R +G+ + + PP ++
Sbjct: 376 KIVGMMASIA-LTPNKASRAKFASEPGTIGYICRERCFANNLIMRHVGDRMIISPPLVIT 434
Query: 631 KNEIQHMTSAIFQTFNE 647
EI M I ++ +E
Sbjct: 435 PAEIDEMFVRIRKSLDE 451
|
| >3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, pyridoxal phosphate, PSI-2, protein structure initiative; 1.70A {Deinococcus radiodurans} Length = 430 | Back alignment and structure |
|---|
Score = 319 bits (821), Expect = e-100
Identities = 100/417 (23%), Positives = 185/417 (44%), Gaps = 27/417 (6%)
Query: 248 LITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLS 307
L +G+RYLD S V GH + + + + Q +L V S + + + + +L+
Sbjct: 23 LYDDAGRRYLDGSSGALVANIGHGRAEVGERMAAQAARLPFVHGSQFSSDVLEEYAGRLA 82
Query: 308 SLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVT 367
+ S G+ A E A+K++ Y +G + K I SYHG +LG+LA +
Sbjct: 83 RFVGLPTFRFWAVSGGSEATESAVKLARQYHVERGEPGRFKVITRVPSYHGASLGSLAAS 142
Query: 368 NIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLE-ILLKKNHNKIAAII 426
+ + +E+YT L+ P + A A A L +L ++ +AA +
Sbjct: 143 GMGARRELYTPLMRPEAWPKLPK------PDPARNGAEDAE-GLRALLEREGPETVAAFM 195
Query: 427 IEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAE-IWPD 485
EP+V + + Y + VR+IC+ I IADE+ G GR G A + PD
Sbjct: 196 AEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRCGSPLALSRWSGVTPD 255
Query: 486 FLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIF 545
L KG+ GY PL+ ++ ++Y ++ F+H +Y+G+P++ A L+ L+I
Sbjct: 256 IAVLGKGLAAGYAPLAGLLAAPQVYETV--MGGSGAFMHGFTYAGHPVSVAAGLSVLDIV 313
Query: 546 NKDNILQRISQDMKKITKALTSLIT-HPKIINFRQKGMIWAFDVIIEDPEQIETF----- 599
++++ + ++ L +L P+++ R G++ + D + F
Sbjct: 314 EREDLTGAAKERGAQLLAGLQALQARFPQMMQVRGTGLLLGVVL--GDLATGQAFETPGI 371
Query: 600 SKKFFVAALKNELLLRP--------IGNTVYLMPPYILNKNEIQHMTSAIFQTFNEL 648
+ + AALK L+ P G+ + L PP + E+ + + + ++
Sbjct: 372 ASRIGAAALKRGLITYPGSGAEPNGRGDHLLLGPPLSITAAEVDGLLALLAGALEDV 428
|
| >2i82_A Ribosomal large subunit pseudouridine synthase A; lyase/RNA complex; HET: FOU; 2.05A {Escherichia coli} Length = 217 | Back alignment and structure |
|---|
Score = 284 bits (728), Expect = 9e-90
Identities = 64/217 (29%), Positives = 106/217 (48%), Gaps = 11/217 (5%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
L I+Y+D+ I+++NK +GL+ P + + P+A VHRLD
Sbjct: 10 PWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRI-----QRDYPQAESVHRLDMA 64
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLN-GMINAAIMRNPHNRIKMT 145
+SG++VVA + + L Q + +++Y+A VWG P G+++ ++ + NR K
Sbjct: 65 TSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQK 124
Query: 146 VSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYG 205
V KPA T YE + + + + TGR+HQ+RVHM LGH I+GD Y
Sbjct: 125 VCYE-TGKPAQTEYEVVEYA---ADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYA 180
Query: 206 KKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLP 242
++++ R LHA L + HP + ++
Sbjct: 181 SPEARAM-APRLLLHAEMLTITHPAYGNSMTFKAPAD 216
|
| >1v9k_A Ribosomal large subunit pseudouridine synthase C; pseudouridine syntase, RNA binding, lyase; 2.00A {Escherichia coli} SCOP: d.265.1.3 PDB: 1xpi_A Length = 228 | Back alignment and structure |
|---|
Score = 282 bits (723), Expect = 7e-89
Identities = 71/232 (30%), Positives = 115/232 (49%), Gaps = 21/232 (9%)
Query: 29 LDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSS 88
I+YED+ I++LNK +G VH G G + + L + P +VHRLD+++S
Sbjct: 2 DVIMYEDDHILVLNKPSGTAVHGGSGLSFGVI-EGLRALRP---EARFLELVHRLDRDTS 57
Query: 89 GLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWG-IPKLNGMINAAIMRNPHNRIKMTVS 147
G+++VAK + L QL+ +Q+ YLA+V G + A +++N + V
Sbjct: 58 GVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVR 117
Query: 148 KNFNAKPALTYY---ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLY 204
+ KP+ T + ER +L+RC+ TGRTHQIRVH Q+ GH I D+ Y
Sbjct: 118 VSQEGKPSETRFKVEERY-------AFATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRY 170
Query: 205 G-KKYSKSLI-----FNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLIT 250
G +++ + L NR LHA L HP ++ + + + + +
Sbjct: 171 GDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGLKRCLQ 222
|
| >1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A* Length = 433 | Back alignment and structure |
|---|
Score = 277 bits (711), Expect = 2e-84
Identities = 94/413 (22%), Positives = 178/413 (43%), Gaps = 27/413 (6%)
Query: 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEK 305
S + G+ LD S + GH + I + KL+H+ S + +PV+ L+ +
Sbjct: 35 SFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHLF-SEMLSRPVVDLATR 93
Query: 306 LSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALA 365
L+++T L S GA + E A++M+ K + + S+HG T A +
Sbjct: 94 LANITPPGLDRALLLSTGAESNEAAIRMAKLV------TGKYEIVGFAQSWHGMTGAAAS 147
Query: 366 VTNIQSFKEIYTSLLNKTYIITTPDS-RNINKGNSANEIARCAIFDLEILLKKNHNKIAA 424
T + ++ ++ I P + R + N A + + +++ +++ +AA
Sbjct: 148 ATY-SAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAA 206
Query: 425 IIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWP 484
I EP + +GG+I Y+ ++ C + LI DE G GRTG FAC+ + P
Sbjct: 207 FIAEP-ILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQRDGVTP 265
Query: 485 DFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEI 544
D L LSK + G PL+ ++T+ I + +L ++ +PL L L++
Sbjct: 266 DILTLSKTLGAGL-PLAAIVTSAAIEERAHELG----YLFYTTHVSDPLPAAVGLRVLDV 320
Query: 545 FNKDNILQRISQDM-KKITKALTSLI-THPKIINFRQKGMIWAFDVIIEDPEQIE---TF 599
+D ++ R + M ++ + L L+ I + R +G++ + I++D E
Sbjct: 321 VQRDGLVAR-ANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVE-IVKDRRTKEPADGL 378
Query: 600 SKKFFVAALKNELLLRPI-----GNTVYLMPPYILNKNEIQHMTSAIFQTFNE 647
K + L + + G + PP ++++EI S + Q
Sbjct: 379 GAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQAIER 431
|
| >3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A Length = 451 | Back alignment and structure |
|---|
Score = 255 bits (654), Expect = 5e-76
Identities = 101/407 (24%), Positives = 176/407 (43%), Gaps = 28/407 (6%)
Query: 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQY 312
G R +D S V G+S + +A+++Q+ H ++ + + E+L+ LT
Sbjct: 60 GNRLIDLGSGIAVTTVGNSAPKVVEAVRSQVGDFTHTCFMVTPYEGYVAVCEQLNRLTPV 119
Query: 313 K-LGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVT-NIQ 370
+ + G+ AVE A+K++ + +K + ++YHG T +A+T +
Sbjct: 120 RGDKRSALFNSGSEAVENAVKIA------RSHTHKPAVVAFDHAYHGRTNLTMALTAKVM 173
Query: 371 SFKEIYTSLLNKTYIITTPDS-RNINKGNSANEIARCAIFDLEILLKK--NHNKIAAIII 427
+K+ + + Y R+ G A ++ K + +AA++I
Sbjct: 174 PYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAAKRAITVIDKQIGADNLAAVVI 233
Query: 428 EPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL 487
EP +Q GG I+ +L + + C ++ IADE+ G RTG FACEH I PD +
Sbjct: 234 EP-IQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTGAMFACEHEGIDPDLI 292
Query: 488 CLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK 547
+KGI GG LPLS V +I +S + +Y GNP+AC AALAT+E
Sbjct: 293 VTAKGIAGG-LPLSAVTGRAEIMDSPHVSG------LGGTYGGNPIACAAALATIETIES 345
Query: 548 DNILQRISQDMKKITKALTSLIT-HPKIINFRQKGMIWAFDVIIEDPEQIE---TFSKKF 603
+ ++ R Q K + L L +I + R +G + A + + E +K
Sbjct: 346 EGLVARAQQIEKIMKDRLGRLQAEDDRIGDVRGRGAMIAME--LVKAGTTEPDADLTKAL 403
Query: 604 FVAALKNELLLRPIG---NTVYLMPPYILNKNEIQHMTSAIFQTFNE 647
A +++ G N V +PP + + + + +
Sbjct: 404 CAGAHAAGVIVLSCGTYGNVVRFLPPLSIGDDLLNEGLDVLEEVLRG 450
|
| >2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A* Length = 420 | Back alignment and structure |
|---|
Score = 254 bits (650), Expect = 9e-76
Identities = 97/406 (23%), Positives = 177/406 (43%), Gaps = 39/406 (9%)
Query: 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNL-THKPVIKLSE 304
S++ GK Y+D V GH + + +ALK+Q L H SN+ T++P ++L
Sbjct: 49 SRVWDQQGKEYIDFAGGIAVTALGHCHPALVEALKSQGETLWHT--SNVFTNEPALRLGR 106
Query: 305 KLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGAL 364
KL T + + G A E A K++ HY + K K I N++HG +L +
Sbjct: 107 KLIDAT--FAERVLFMNSGTEANETAFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTV 164
Query: 365 AVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAA 424
+V + + + D ++ DL + + A
Sbjct: 165 SVGGQPKYSDGFGPKP--------ADIIHVPFN------------DLHAVKAVMDDHTCA 204
Query: 425 IIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWP 484
+++EP +Q GG+ +LK +R++C+ + L+ DE+ G GRTG FA H + P
Sbjct: 205 VVVEP-IQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDLFAYMHYGVTP 263
Query: 485 DFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEI 544
D L +K + GG P+S ++TT +I ++ + + H +Y GNPLAC A A +I
Sbjct: 264 DILTSAKALGGG-FPVSAMLTTQEIASAFHVGS------HGSTYGGNPLACAVAGAAFDI 316
Query: 545 FNKDNILQRISQDMKKITKALTSLIT-HPKIINFRQKGMIWAFDVIIEDPEQIETFSKKF 603
N +LQ I ++ + L ++ + R G++ E + + ++ F
Sbjct: 317 INTPEVLQGIHTKRQQFVQHLQAIDEQFDIFSDIRGMGLLIG----AELKPKYKGRARDF 372
Query: 604 FVAALKNELLLRPIG-NTVYLMPPYILNKNEIQHMTSAIFQTFNEL 648
A + +++ G + + P ++ + +I Q ++
Sbjct: 373 LYAGAEAGVMVLNAGADVMRFAPSLVVEEADIHEGMQRFAQAVGKV 418
|
| >2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A Length = 449 | Back alignment and structure |
|---|
Score = 253 bits (649), Expect = 3e-75
Identities = 79/414 (19%), Positives = 157/414 (37%), Gaps = 36/414 (8%)
Query: 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVM----LSNLTHKPVIKLSEKLSS 308
G+RYLD + + G + + + ++ + S++ + + E +
Sbjct: 53 GRRYLDMFTFVASSALGMNPPALVDDREFHAELMQAALNKPSNSDVYSVAMARFVETFAR 112
Query: 309 LTQYK-LGHCFYGSDGASAVEVALKMSFHYWYNKGFLN------KKKFICLQNSYHGETL 361
+ L H F+ GA AVE ALK +F + + + + L+ ++HG +
Sbjct: 113 VLGDPALPHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSG 172
Query: 362 GALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNK 421
L++TN + + I P R + + A+ + +
Sbjct: 173 YTLSLTNTKPTITARFPKFD-WPRIDAPYMRPGLDEPAMAALEAEALRQARAAFETRPHD 231
Query: 422 IAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAE 481
IA + EP +Q GG + + +RE+C+ ++ LI DE+ GCG TG +A + +
Sbjct: 232 IACFVAEP-IQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCGLTGTAWAYQQLD 290
Query: 482 IWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFL----HSHSYSGNPLACCA 537
+ PD + K + + N+F + ++ GN
Sbjct: 291 VAPDIVAFGKKTQVCGVMAGRRVDEVA----------DNVFAVPSRLNSTWGGNLTDMVR 340
Query: 538 ALATLEIFNKDNILQRISQDMKKITKALTSLIT-HPKII-NFRQKGMIWAFDVIIEDPEQ 595
A LE+ + + +R Q K + L L P ++ + R +G++ AF +
Sbjct: 341 ARRILEVIEAEGLFERAVQHGKYLRARLDELAADFPAVVLDPRGRGLMCAFS--LPTTAD 398
Query: 596 IETFSKKFFVAALKNELLLRPIG-NTVYLMPPYILNKNEIQHMTSAIFQTFNEL 648
+ + +++ P G +TV PP ++ EI +A+ +
Sbjct: 399 ----RDELIRQLWQRAVIVLPAGADTVRFRPPLTVSTAEIDAAIAAVRSALPVV 448
|
| >1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A* Length = 426 | Back alignment and structure |
|---|
Score = 252 bits (646), Expect = 3e-75
Identities = 109/408 (26%), Positives = 185/408 (45%), Gaps = 31/408 (7%)
Query: 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQY 312
G+ YLD V GH + + A++ QL KL H L ++P ++L E ++
Sbjct: 40 GREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVPG 99
Query: 313 KLGHC-FYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQS 371
+ G+ AVE A+K++ + I +YHG T LA+T +
Sbjct: 100 DFAKKTLLVTTGSEAVENAVKIARAA------TKRSGTIAFSGAYHGRTHYTLALTGKVN 153
Query: 372 -FKEIYTSLLNKTYIITTPDS-RNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEP 429
+ + Y P I++ ++ I R IF + IAAI+IEP
Sbjct: 154 PYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHR--IFKNDA----APEDIAAIVIEP 207
Query: 430 LVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCL 489
VQ GG +++ +R +C+ + I LIADE+ G GRTG FA E + PD
Sbjct: 208 -VQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGVAPDLTTF 266
Query: 490 SKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDN 549
+K I GG PL+ V ++ +++ +Y+GNP+AC AAL L++F ++N
Sbjct: 267 AKSIAGG-FPLAGVTGRAEVMDAVAPGG------LGGTYAGNPIACVAALEVLKVFEQEN 319
Query: 550 ILQRISQDMKKITKALTSLI-THPKIINFRQKGMIWAFDVIIEDPEQIE---TFSKKFFV 605
+LQ+ + +K+ L ++ HP+I + R G + A + + ED + + + +
Sbjct: 320 LLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAMIAIE-LFEDGDHNKPDAKLTAEIVA 378
Query: 606 AALKNELLLR---PIGNTVYLMPPYILNKNEIQHMTSAIFQTFNELDE 650
A L+L P N + ++ P + +I+ I Q F+E +
Sbjct: 379 RARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQGLEIISQCFDEAKQ 426
|
| >3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A* Length = 439 | Back alignment and structure |
|---|
Score = 251 bits (643), Expect = 1e-74
Identities = 93/411 (22%), Positives = 168/411 (40%), Gaps = 36/411 (8%)
Query: 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLT-Q 311
G+ +D +W G+ + I A+ + + ++ P + L+E+L +
Sbjct: 42 GRELIDLSGAWGAASLGYGHPAIVAAVSAAAANPAGATILSASNAPAVTLAERLLASFPG 101
Query: 312 YKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQS 371
++G G+ A E A + + I +YHG T+G++A +
Sbjct: 102 EGTHKIWFGHSGSDANEAAYRAI------VKATGRSGVIAFAGAYHGCTVGSMAFSGHSV 155
Query: 372 FKEIYTSLLNKTYIITTPDS-RNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPL 430
+ + ++ PD R + + I E L I A IEP
Sbjct: 156 QA--DAAKADGLILLPYPDPYRPYRNDPTGDAILT---LLTEKLAAVPAGSIGAAFIEP- 209
Query: 431 VQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS 490
+Q GG+I+ +L+ +IC + I ++ DE+ VG R+G+ EH PD L L
Sbjct: 210 IQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGRLHCFEHEGFVPDILVLG 269
Query: 491 KGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLH-SHS--YSGNPLACCAALATLEIFNK 547
KG+ GG LPLS V+ +I + GNP++ A LA LE ++
Sbjct: 270 KGLGGG-LPLSAVIAPAEILDC----------ASAFAMQTLHGNPISAAAGLAVLETIDR 318
Query: 548 DNILQRISQDMKKITKALTSLIT-HPKIINFRQKGMIWAFDVIIEDPEQIE---TFSKKF 603
D++ + + + L+ L HP I + R +G+ + ++ D + E + K
Sbjct: 319 DDLPAMAERKGRLLRDGLSELAKRHPLIGDIRGRGLACGME-LVCDRQSREPARAETAKL 377
Query: 604 FVAALKNELLLRPIG---NTVYLMPPYILNKNEIQHMTSAIFQTFNELDEV 651
A + L++ +G N + PP + + +I + + F+EL V
Sbjct: 378 IYRAYQLGLVVYYVGMNGNVLEFTPPLTITETDIHKALDLLDRAFSELSAV 428
|
| >4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus} Length = 453 | Back alignment and structure |
|---|
Score = 249 bits (639), Expect = 7e-74
Identities = 102/405 (25%), Positives = 177/405 (43%), Gaps = 27/405 (6%)
Query: 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQY 312
G ++D + V G S+ + A+ +Q H ++ ++++E L++LT
Sbjct: 63 GNSFIDLGAGIAVTTVGASHPAVAAAIADQATHFTHTCFMVTPYEQYVQVAELLNALTPG 122
Query: 313 KL-GHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVT-NIQ 370
+ GA AVE A+K++ + + + N+YHG T +A+T
Sbjct: 123 DHDKRTALFNSGAEAVENAIKVA------RLATGRPAVVAFDNAYHGRTNLTMALTAKSM 176
Query: 371 SFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPL 430
+K + + Y + G + E AR AI +E + +AAIIIEP
Sbjct: 177 PYKSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARRAISRIETQI--GAQSLAAIIIEP- 233
Query: 431 VQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS 490
+Q GG I+ +L + + + IADE+ G RTG +FA EH I PD + ++
Sbjct: 234 IQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFARTGAWFASEHEGIVPDIVTMA 293
Query: 491 KGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNI 550
KGI GG +PLS V ++ +++Y +Y GNP+ C AA+A L + + ++
Sbjct: 294 KGIAGG-MPLSAVTGRAELMDAVYAGG------LGGTYGGNPVTCAAAVAALGVMRELDL 346
Query: 551 LQRISQDMKKITKALTSLIT-HPKIINFRQKGMIWAFDVIIEDPEQIE---TFSKKFFVA 606
R +T L++L I R +G + A + I P +E +K
Sbjct: 347 PARARAIEASVTSRLSALAEEVDIIGEVRGRGAMLAIE--IVKPGTLEPDAALTKSIAAE 404
Query: 607 ALKNELLLRPIG---NTVYLMPPYILNKNEIQHMTSAIFQTFNEL 648
AL +L+ G N + L+PP ++ + + +A+
Sbjct: 405 ALSQGVLILTCGTFGNVIRLLPPLVIGDDLLDEGITALSDIIRAK 449
|
| >3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp} Length = 395 | Back alignment and structure |
|---|
Score = 246 bits (631), Expect = 2e-73
Identities = 110/406 (27%), Positives = 189/406 (46%), Gaps = 41/406 (10%)
Query: 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNL-THKPVIKLSE 304
L K+YLD S V G++++ N +K Q++KL H SNL ++ + ++
Sbjct: 28 VYLFDDKAKKYLDFSSGIGVCALGYNHAKFNAKIKAQVDKLLHT--SNLYYNENIAAAAK 85
Query: 305 KLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGAL 364
L+ + L F+ + G ++E A+K + Y +NKG + +FI ++S+HG TLGAL
Sbjct: 86 NLAKAS--ALERVFFTNSGTESIEGAMKTARKYAFNKG-VKGGQFIAFKHSFHGRTLGAL 142
Query: 365 AVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAA 424
++T + +++ + L++ + D+ + K + K A
Sbjct: 143 SLTANEKYQKPFKPLIS--------------------GVKFAKYNDISSVEKLVNEKTCA 182
Query: 425 IIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWP 484
II+E VQ GG+ + + K +R++C+ +I LIADEI G GR+GKFFA EHA+I P
Sbjct: 183 IILES-VQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSGKFFAYEHAQILP 241
Query: 485 DFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEI 544
D + +K + G L + + K+ ++ + H +Y GNPL C A EI
Sbjct: 242 DIMTSAKALGCG-LSVGAFVINQKVASNSLEAGD-----HGSTYGGNPLVCAGVNAVFEI 295
Query: 545 FNKDNILQRISQDMKKITKALTSLIT-HPKIINFRQKGMIWAFDVIIEDPEQIETFSKKF 603
F ++ IL+ +++ + ++L LI + G + + K
Sbjct: 296 FKEEKILENVNKLTPYLEQSLDELINEFDFCKKRKGLGFMQGLSLDKSVK------VAKV 349
Query: 604 FVAALKNELLLRPIG-NTVYLMPPYILNKNEIQHMTSAIFQTFNEL 648
+N LLL G N + +PP IL K I M+ + +
Sbjct: 350 IQKCQENALLLISCGENDLRFLPPLILQKEHIDEMSEKLRKALKSF 395
|
| >2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A* Length = 397 | Back alignment and structure |
|---|
Score = 246 bits (631), Expect = 2e-73
Identities = 106/409 (25%), Positives = 187/409 (45%), Gaps = 49/409 (11%)
Query: 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNL-THKPVIKLSE 304
S + G YLD S VN+ GHS+ + +A+K+Q KL H SNL ++P ++L+E
Sbjct: 32 SWIYDEKGNAYLDFTSGIAVNVLGHSHPRLVEAIKDQAEKLIHC--SNLFWNRPQMELAE 89
Query: 305 KLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGAL 364
LS T G F+ + G A E A+K++ Y K K + + NS+HG TLG+L
Sbjct: 90 LLSKNT--FGGKVFFANTGTEANEAAIKIARKYGKKKS-EKKYRILSAHNSFHGRTLGSL 146
Query: 365 AVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAA 424
T +++ + L+ G ++E L +K + A
Sbjct: 147 TATGQPKYQKPFEPLV---------------PG-----FEYFEFNNVEDLRRKMSEDVCA 186
Query: 425 IIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWP 484
+ +EP +Q G++ +L+ R++C+ Y+ L+ DE+ G GRTGK FA + + P
Sbjct: 187 VFLEP-IQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGKLFAYQKYGVVP 245
Query: 485 DFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFL---HSHSYSGNPLACCAALAT 541
D L +KG+ GG +P+ V+ ++ N+ H ++ GNPLAC A +
Sbjct: 246 DVLTTAKGLGGG-VPIGAVIVNER----------ANVLEPGDHGTTFGGNPLACRAGVTV 294
Query: 542 LEIFNKDNILQRISQDMKKITKALTSLIT-HPKIINFRQKGMIWAFDVIIEDPEQIETFS 600
++ K+ L+ + + + K L + + + + R G++ E +
Sbjct: 295 IKELTKEGFLEEVEEKGNYLMKKLQEMKEEYDVVADVRGMGLMIGIQFREEVS------N 348
Query: 601 KKFFVAALKNELLLRPIG-NTVYLMPPYILNKNEIQHMTSAIFQTFNEL 648
++ +N+LL+ P G NT+ +PP + EI + + +
Sbjct: 349 REVATKCFENKLLVVPAGNNTIRFLPPLTVEYGEIDLAVETLKKVLQGI 397
|
| >2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii} Length = 419 | Back alignment and structure |
|---|
Score = 242 bits (621), Expect = 1e-71
Identities = 91/410 (22%), Positives = 179/410 (43%), Gaps = 46/410 (11%)
Query: 253 GKRYLDAISSWWVNLFG-HSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQ 311
G +YLD S VN G S+ + K Q+ KL H ++ + P ++L++KL + +
Sbjct: 41 GNKYLDFTSGIGVNNLGWPSHPEVIKIGIEQMQKLAHAAANDFYNIPQLELAKKLVTYSP 100
Query: 312 YKL-GHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVT-NI 369
F+ + G A+E ++K+ + +K I +HG T G++++T +
Sbjct: 101 GNFQKKVFFSNSGTEAIEASIKVVKNT-------GRKYIIAFLGGFHGRTFGSISLTASK 153
Query: 370 QSFKEIYTSLLNKTYIITTPD----SRNINKGNSANEIARCAIFDLEILLKKNH---NKI 422
+ I + + P+ +IN + +E+ I +E + N ++
Sbjct: 154 AVQRSIVGPFMPGVIHVPYPNPYRNPWHINGYENPSELVNRVIEFIEDYIFVNLVPPEEV 213
Query: 423 AAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEI 482
A I EP +Q GG ++ + ++++ Y I L+ DE+ +G GRTGK FA E+
Sbjct: 214 AGIFFEP-IQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQMGLGRTGKLFAIENFNT 272
Query: 483 WPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIF---LHSHSYSGNPLACCAAL 539
PD + L+K + GG +P+ + + F +HS+++ GN LAC
Sbjct: 273 VPDVITLAKALGGGIMPIGATIFRKDL-----------DFKPGMHSNTFGGNALACAIGS 321
Query: 540 ATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETF 599
++I ++L +++ K + L L R G+ W + + +
Sbjct: 322 KVIDIV--KDLLPHVNEIGKIFAEELQGLADD-----VRGIGLAWGLE--YNEKK----V 368
Query: 600 SKKFFVAALKNELLLRPIG-NTVYLMPPYILNKNEIQHMTSAIFQTFNEL 648
+ + K LLL P G + + ++PP ++++ E + + + +
Sbjct: 369 RDRIIGESFKRGLLLLPAGRSAIRVIPPLVISEEEAKQGLDILKKVIKVV 418
|
| >1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A Length = 433 | Back alignment and structure |
|---|
Score = 241 bits (618), Expect = 3e-71
Identities = 98/404 (24%), Positives = 163/404 (40%), Gaps = 42/404 (10%)
Query: 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPV-IKLSEKLSSLTQ 311
KRY D +S++ GH + I A+ NQ L S L++L
Sbjct: 64 DKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLTIC--SRAFFSVPLGICERYLTNLLG 121
Query: 312 YKLGHCFYGSDGASAVEVALKMSFHYWYNKGFL--NKKKFICLQNSYHGETLGALAVTNI 369
Y + GA A E A K+ + Y + N K + +N++ G TLG ++ +
Sbjct: 122 Y--DKVLMMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTT 179
Query: 370 QSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNK-IAAIIIE 428
+ + P + DLE L ++ + + A I+E
Sbjct: 180 KKCTSNFGPF--------APQFSKVPYD------------DLEALEEELKDPNVCAFIVE 219
Query: 429 PLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLC 488
P +Q G+I+ YL+ V +IC YN+ +ADE+ G GRTGK H + PD +
Sbjct: 220 P-IQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCVHHYNVKPDVIL 278
Query: 489 LSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKD 548
L K ++GG+ P+S V+ D I I H +Y GNPLA + L + +
Sbjct: 279 LGKALSGGHYPISAVLANDDIMLVIKPGE------HGSTYGGNPLAASICVEALNVLINE 332
Query: 549 NILQRISQDMKKITKALTSLI-THPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAA 607
+ + + + L + + + R KG++ A + E + +
Sbjct: 333 KLCENAEKLGGPFLENLKRELKDSKIVRDVRGKGLLCAIEF---KNELVN--VLDICLKL 387
Query: 608 LKNELLLRPI-GNTVYLMPPYILNKNEIQHMTSAIFQTFNELDE 650
+N L+ R + T+ L PP + K ++ T I +T DE
Sbjct: 388 KENGLITRDVHDKTIRLTPPLCITKEQLDECTEIIVKTVKFFDE 431
|
| >3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} Length = 392 | Back alignment and structure |
|---|
Score = 237 bits (608), Expect = 3e-70
Identities = 100/398 (25%), Positives = 176/398 (44%), Gaps = 44/398 (11%)
Query: 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPV-IKLSEKLSSLTQ 311
G RY+D +S++ GH + I AL +Q N++ S H EK++ LT
Sbjct: 35 GNRYMDLLSAYSAVNQGHRHPKIINALIDQANRVTLT--SRAFHSDQLGPWYEKVAKLTN 92
Query: 312 YKLGHCFYGSDGASAVEVALKMSFHYWYNKGFL--NKKKFICLQNSYHGETLGALAVTNI 369
+ GA AVE A+K + + Y+ + N+ + I ++++HG T+GA+++++
Sbjct: 93 K--EMVLPMNTGAEAVETAIKTARRWAYDVKKVEANRAEIIVCEDNFHGRTMGAVSMSSN 150
Query: 370 QSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEP 429
+ +K + + P I G DLE L AA I+EP
Sbjct: 151 EEYKRGFGPM--------LPGIIVIPYG------------DLEALKAAITPNTAAFILEP 190
Query: 430 LVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCL 489
+Q G+ + + +LK E+C N+ +ADEI G GRTGK FAC+ + PD L
Sbjct: 191 -IQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGKVFACDWDNVTPDMYIL 249
Query: 490 SKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDN 549
K + GG P+S I + H ++ GNPLAC ++A LE+ ++
Sbjct: 250 GKALGGGVFPISCAAANRDILGVFEPGS------HGSTFGGNPLACAVSIAALEVLEEEK 303
Query: 550 ILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALK 609
+ +R S + + I +P I R KG+ + + +P ++ +
Sbjct: 304 LTER-SLQLGEKLVGQLKEIDNPMITEVRGKGLFIG--IELNEP------ARPYCEQLKA 354
Query: 610 NELLLRPI-GNTVYLMPPYILNKNEIQHMTSAIFQTFN 646
LL + N + + PP ++++ +++ I +
Sbjct: 355 AGLLCKETHENVIRIAPPLVISEEDLEWAFQKIKAVLS 392
|
| >1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A* Length = 395 | Back alignment and structure |
|---|
Score = 235 bits (601), Expect = 3e-69
Identities = 96/398 (24%), Positives = 170/398 (42%), Gaps = 46/398 (11%)
Query: 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNL-THKPVIKLSE 304
+++ G Y+D + + V GH N + +A+K Q L + +
Sbjct: 37 ARVWDAEGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETLMAM--PQTLPTPMRGEFYR 94
Query: 305 KLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGAL 364
L+++ +L F + G A E ALK + + +KKF+ + G T+G+L
Sbjct: 95 TLTAILPPELNRVFPVNSGTEANEAALKFARAHTG------RKKFVAAMRGFSGRTMGSL 148
Query: 365 AVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAA 424
+VT ++E + L+ I D+E L + + AA
Sbjct: 149 SVTWEPKYREPFLPLV--------EPVEFIPYN------------DVEALKRAVDEETAA 188
Query: 425 IIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWP 484
+I+EP VQ GG+ +L+ REI LI DEI G GRTGK FA EH I P
Sbjct: 189 VILEP-VQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFGIVP 247
Query: 485 DFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEI 544
D L L+K + GG +PL + + +++ S+ H ++ GNPLA A +A +
Sbjct: 248 DILTLAKALGGG-VPLGVAVMREEVARSMPKGG------HGTTFGGNPLAMAAGVAAIRY 300
Query: 545 FNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFF 604
+ + +R ++ + L ++ PKI R G++ ++ + I
Sbjct: 301 LERTRLWERAAELGPWFMEKLRAI-PSPKIREVRGMGLMVGLELKEKAAPYIAR------ 353
Query: 605 VAALKNELLLRPIG-NTVYLMPPYILNKNEIQHMTSAI 641
++ +L G + +PP ++ K +++ + A+
Sbjct: 354 -LEKEHRVLALQAGPTVIRFLPPLVIEKEDLERVVEAV 390
|
| >2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A* Length = 439 | Back alignment and structure |
|---|
Score = 234 bits (599), Expect = 2e-68
Identities = 99/401 (24%), Positives = 180/401 (44%), Gaps = 41/401 (10%)
Query: 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNL-THKPVIKLSEKLSSLTQ 311
G++Y D +SS+ GH + I ALK+Q++KL S + + + E ++ L
Sbjct: 75 GRKYFDFLSSYSAVNQGHCHPKIVNALKSQVDKLTLT--SRAFYNNVLGEYEEYITKLFN 132
Query: 312 YKLGHCFYGSDGASAVEVALKMSFHYWYNKGFL--NKKKFICLQNSYHGETLGALAVTNI 369
Y + G A E A K++ + Y + K K + ++ G TL A++ +
Sbjct: 133 Y--HKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTD 190
Query: 370 QSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKK-NHNKIAAIIIE 428
+ + + P I DL L + +AA ++E
Sbjct: 191 PTSYDGFGPF--------MPGFDIIPYN------------DLPALERALQDPNVAAFMVE 230
Query: 429 PLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLC 488
P +Q G+++ D YL VRE+C + + IADEI G RTG++ A ++ + PD +
Sbjct: 231 P-IQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVRPDIVL 289
Query: 489 LSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKD 548
L K ++GG P+S V+ D I +I H +Y GNPL C A+A LE+ ++
Sbjct: 290 LGKALSGGLYPVSAVLCDDDIMLTIKPGE------HGSTYGGNPLGCRVAIAALEVLEEE 343
Query: 549 NILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAAL 608
N+ + + + I + + + R KG++ A ++I++ + + + K +
Sbjct: 344 NLAEN-ADKLGIILRNELMKLPSDVVTAVRGKGLLNA--IVIKETKDWD--AWKVCLRLR 398
Query: 609 KNELLLRPI-GNTVYLMPPYILNKNEIQHMTSAIFQTFNEL 648
N LL +P G+ + PP ++ ++E++ I +T
Sbjct: 399 DNGLLAKPTHGDIIRFAPPLVIKEDELRESIEIINKTILSF 439
|
| >2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus} Length = 375 | Back alignment and structure |
|---|
Score = 228 bits (585), Expect = 3e-67
Identities = 110/402 (27%), Positives = 187/402 (46%), Gaps = 48/402 (11%)
Query: 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNL-THKPVIKLSE 304
L GK YLD +S VN GH+ + +ALK Q+ KL HV SNL + +L+
Sbjct: 20 VYLYDEEGKEYLDFVSGIGVNSLGHAYPKLTEALKEQVEKLLHV--SNLYENPWQEELAH 77
Query: 305 KLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGAL 364
KL + G F+ + G +VE A+K++ YW +KG NK KFI +NS+HG T G+L
Sbjct: 78 KLVKHF-WTEGKVFFANSGTESVEAAIKLARKYWRDKG-KNKWKFISFENSFHGRTYGSL 135
Query: 365 AVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAA 424
+ T F + + L+ + + D++ + K + A
Sbjct: 136 SATGQPKFHKGFEPLVP--------------------GFSYAKLNDIDSVYKLLDEETAG 175
Query: 425 IIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWP 484
IIIE +Q GG+ +L ++EIC ++ LI DE+ G GRTG+F+A +H + P
Sbjct: 176 IIIEV-IQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGEFYAYQHFNLKP 234
Query: 485 DFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEI 544
D + L+KG+ GG +P+ ++ +++ S + H ++ GNPLAC A ++
Sbjct: 235 DVIALAKGLGGG-VPIGAILAREEVAQSFTPGS------HGSTFGGNPLACRAGTVVVDE 287
Query: 545 FNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFF 604
+ +L + + + L L + + +G++ ++ E K +
Sbjct: 288 V--EKLLPHVREVGNYFKEKLKELGK--GKV--KGRGLMLGLELERE--------CKDYV 333
Query: 605 VAALKNELLLRPIG-NTVYLMPPYILNKNEIQHMTSAIFQTF 645
+ AL+ LL+ + +PP I+ K I S + +
Sbjct: 334 LKALEKGLLINCTAGKVLRFLPPLIIQKEHIDRAISVLREIL 375
|
| >1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A* Length = 472 | Back alignment and structure |
|---|
Score = 219 bits (559), Expect = 2e-62
Identities = 85/431 (19%), Positives = 151/431 (35%), Gaps = 56/431 (12%)
Query: 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKP----VIKLSEKLSS 308
G R LD S G+S+ + K ++ N + L P V KL E L S
Sbjct: 62 GNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFINRPALGILPPENFVEKLRESLLS 121
Query: 309 LTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLN--------------------KKK 348
+ + + G+ + E A K F ++ +K
Sbjct: 122 VAPKGMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYS 181
Query: 349 FICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSR---NINKGNSANEIAR 405
+ ++HG T+G LA T+ ++ +I + I P + + E AR
Sbjct: 182 ILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFD-WPIAPFPRLKYPLEEFVKENQQEEAR 240
Query: 406 C--AIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADE 463
C + DL + +K +A II+EP +Q GG + + +R+I + + DE
Sbjct: 241 CLEEVEDLIVKYRKKKKTVAGIIVEP-IQSEGGDNHASDDFFRKLRDISRKHGCAFLVDE 299
Query: 464 IAVGCGRTGKFFACEHA--EIWPDFLCLSKGITGGYLPLS-LVMTTDKIYNSIYYKNNIN 520
+ G G TGKF+A EH + D + SK + G + Y
Sbjct: 300 VQTGGGSTGKFWAHEHWGLDDPADVMTFSKKMMTG-GFFHKEEFRPNAPYR--------- 349
Query: 521 IFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLI-THPKII-NFR 578
+++ G+P + I ++++L + K + L L +P+ I R
Sbjct: 350 ---IFNTWLGDPSKNLLLAEVINIIKREDLLSNAAHAGKVLLTGLLDLQARYPQFISRVR 406
Query: 579 QKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG-NTVYLMPPYILNKNEIQHM 637
+G +FD D K A ++L G ++ P + +
Sbjct: 407 GRGTFCSFD--TPDES----IRNKLISIARNKGVMLGGCGDKSIRFRPTLVFRDHHAHLF 460
Query: 638 TSAIFQTFNEL 648
+ +
Sbjct: 461 LNIFSDILADF 471
|
| >2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A* Length = 465 | Back alignment and structure |
|---|
Score = 85.3 bits (212), Expect = 2e-17
Identities = 47/235 (20%), Positives = 75/235 (31%), Gaps = 46/235 (19%)
Query: 411 LEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGR 470
LLK++ + AAI++EP + AGG + + +L L+R + LI DE V R
Sbjct: 223 TADLLKRHGHDCAAILVEP-MLGAGGCVPAERAFLDLLRAEASRCGALLIFDE--VMTSR 279
Query: 471 TGKFFACEHAEIWPDFLCLSKGITGGYLPL------SLVMTTDKI----YNSIYYKNNIN 520
A E I D L K I GG + +M ++ +
Sbjct: 280 LSGGGAQEMLGISADLTTLGKYIGGG-MSFGAFGGRRDLM--ERFDPARDGAFA------ 330
Query: 521 IFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLIT---HPKIINF 577
H+ +++ N L A A L +S + L + P
Sbjct: 331 ---HAGTFNNNILTMSAGHAALTQIYTRQAASDLSASGDRFRANLNRIAVENQAPLQFT- 386
Query: 578 RQKGMIWAF--DVIIEDPEQ-----IETFSKKFFVAALKNELLLRPIGNTVYLMP 625
+ I + + FF L+ G +YL P
Sbjct: 387 GLGSLGTIHFSRAPIRSAGDVRAADQQLK-ELFFFHMLRK-------G--IYLAP 431
|
| >2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri} Length = 453 | Back alignment and structure |
|---|
Score = 80.4 bits (199), Expect = 7e-16
Identities = 44/246 (17%), Positives = 80/246 (32%), Gaps = 61/246 (24%)
Query: 411 LEILLKKNHNKIAAIIIEPLVQCAG--GMIMYDSIYLKLVREICNNYNIHLIADEIAVGC 468
+ + + + IAA I EP G+ +L+ E+ Y I DE V
Sbjct: 191 MREVFANHGSDIAAFIAEP---VGSHFGVTPVSDSFLREGAELARQYGALFILDE--VIS 245
Query: 469 G-RTGKFFACEHAEIWPDFLCLSKGITGGYLPLSL------VMT------TDKIYNSIYY 515
G R G ++ PD CL+K GG LP + VM K+
Sbjct: 246 GFRVGNHGMQALLDVQPDLTCLAKASAGG-LPGGILGGREDVMGVLSRGSDRKVL----- 299
Query: 516 KNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLIT---HP 572
H +++GNP+ AA+A ++ +D++ +I+ + +A+ L
Sbjct: 300 --------HQGTFTGNPITAAAAIAAIDTILEDDVCAKINDLGQFAREAMNHLFARKGLN 351
Query: 573 KIINFRQKGMIWAF--------DVIIEDPEQ-----IETFSKKFFVAALKNELLLRPIGN 619
+ + D + ++ +A + G
Sbjct: 352 WLAY-GRFSGFHLMPGLPPNTTDTGSITRAEVARPDVKMI-AAMRMALILE-------G- 401
Query: 620 TVYLMP 625
V +
Sbjct: 402 -VDIGG 406
|
| >3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} Length = 434 | Back alignment and structure |
|---|
Score = 79.8 bits (198), Expect = 8e-16
Identities = 54/238 (22%), Positives = 91/238 (38%), Gaps = 53/238 (22%)
Query: 411 LEILLKKNHNKIAAIIIEPLVQCAG--GMIMYDSIYLKLVREICNNYNIHLIADEIAVGC 468
L+ L K +++AAI++EP G G++ +L+ V E+ + +I DE V
Sbjct: 192 LKEALDKWGHEVAAILVEP---IVGNFGIVEPKPGFLEKVNELVHEAGALVIYDE--VIT 246
Query: 469 G-RTGKFFACEHAEIWPDFLCLSKGITGGYLPL----------SLVMTTDKIYNSIYYKN 517
R A + + PD L K I GG LP+ V Y
Sbjct: 247 AFRFMYGGAQDLLGVTPDLTALGKVIGGG-LPIGAYGGKKEIMEQVAPLGPAY------- 298
Query: 518 NINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLIT---HPKI 574
+ + +GNP + + +A LE+ ++ + +++ + + K +
Sbjct: 299 ------QAGTMAGNPASMASGIACLEVLQQEGLYEKLDELGATLEKGILEQAAKHNIDIT 352
Query: 575 INFRQKGMIWAF--DVIIEDPEQ-----IETFSKKFFVAALKNELLLRPIGNTVYLMP 625
+N R KG + + IED + E F KFF L+ G V L P
Sbjct: 353 LN-RLKGALTVYFTTNTIEDYDAAQDTDGEMF-GKFFKLMLQE-------G--VNLAP 399
|
| >4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis} Length = 429 | Back alignment and structure |
|---|
Score = 79.8 bits (198), Expect = 8e-16
Identities = 54/239 (22%), Positives = 92/239 (38%), Gaps = 54/239 (22%)
Query: 411 LEILLKKNHNKIAAIIIEPLVQCAG--GMIMYDSIYLKLVREICNNYNIHLIADEIAVGC 468
+ ++ ++A II+EP AG I +L +R +C+ + LI DE V
Sbjct: 190 VRQAFEQYPQEVACIIVEP---VAGNMNCIPPLPEFLPGLRALCDEFGALLIIDE--VMT 244
Query: 469 G-RTGKFFACEHAEIWPDFLCLSKGITGGYLPL------SLVMTTDKI--YNSIYYKNNI 519
G R A ++ + PD CL K I GG +P+ VM + + +Y
Sbjct: 245 GFRVALAGAQDYYHVIPDLTCLGKIIGGG-MPVGAFGGRREVM--NALAPTGPVY----- 296
Query: 520 NIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLIT---HPKIIN 576
+ + SGNP+A A A L ++ + + +++ + L P ++N
Sbjct: 297 ----QAGTLSGNPIAMAAGFACLTEISQVGVYETLTELTDSLATGLRHAAKEENIPLVVN 352
Query: 577 FRQKGMIWAFDVIIEDPEQIETFS----------KKFFVAALKNELLLRPIGNTVYLMP 625
GM F + + + + K+FF L+ G VYL P
Sbjct: 353 -HVGGMFGLF---FTNADTVTCYQDVMNCDVERFKRFFHLMLEE-------G--VYLAP 398
|
| >3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A* Length = 427 | Back alignment and structure |
|---|
Score = 79.1 bits (196), Expect = 2e-15
Identities = 58/236 (24%), Positives = 98/236 (41%), Gaps = 49/236 (20%)
Query: 411 LEILLKKNHNKIAAIIIEPLVQCAG--GMIMYDSIYLKLVREICNNYNIHLIADEIAVGC 468
++ L +N +IA +I+EP G G I+ D+ +L+ +REI ++ L+ DE V
Sbjct: 189 VKALFAENPGEIAGVILEP---IVGNSGFIVPDAGFLEGLREITLEHDALLVFDE--VIT 243
Query: 469 G-RTGKFFACEHAEIWPDFLCLSKGITGGYLPL------SLVMTTDKI--YNSIYYKNNI 519
G R E + PD L K I GG LP+ +M + +Y
Sbjct: 244 GFRIAYGGVQEKFGVTPDLTTLGKIIGGG-LPVGAYGGKREIM--QLVAPAGPMY----- 295
Query: 520 NIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLIT---HPKIIN 576
+ + SGNPLA A + TLE+ + + + Q K+++ L ++ H
Sbjct: 296 ----QAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLLAIAQETGHAACGG 351
Query: 577 FRQKGMIWAF--DVIIEDPEQ-----IETFSKKFFVAALKNELLLRPIGNTVYLMP 625
+ GM F + + + E ++ F +F L+ G +YL P
Sbjct: 352 -QVSGMFGFFFTEGPVHNYEDAKKSDLQKF-SRFHRGMLEQ-------G--IYLAP 396
|
| >2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A* Length = 434 | Back alignment and structure |
|---|
Score = 77.5 bits (192), Expect = 5e-15
Identities = 50/238 (21%), Positives = 93/238 (39%), Gaps = 53/238 (22%)
Query: 411 LEILLKKNHNKIAAIIIEPLVQCAG--GMIMYDSIYLKLVREICNNYNIHLIADEIAVGC 468
LE + + ++IA +I+EP G+I +L ++ + LI DE V
Sbjct: 193 LERVFAEYGDRIAGVIVEP---VIANAGVIPPRREFLAALQRLSRESGALLILDE--VVT 247
Query: 469 G-RTGKFFACEHAEIWPDFLCLSKGITGGYLPL----------SLVMTTDKIYNSIYYKN 517
G R G A + I D + L K I GG P+ SL+ K++
Sbjct: 248 GFRLGLEGAQGYFNIEGDIIVLGKIIGGG-FPVGAVAGSREVMSLLTPQGKVF------- 299
Query: 518 NINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLIT---HPKI 574
++ +++ +P+ A LATL+ ++ + + K + +A + ++ P
Sbjct: 300 ------NAGTFNAHPITMAAGLATLKALEEEPVYSVSREAAKALEEAASEVLDRTGLPYT 353
Query: 575 INFRQKGMIWAF--DVIIEDPEQ-----IETFSKKFFVAALKNELLLRPIGNTVYLMP 625
IN R + M+ F + + Q + + K L+ G V++ P
Sbjct: 354 IN-RVESMMQLFIGVEEVSNAAQARKADKKFY-VKLHEEMLRR-------G--VFIAP 400
|
| >3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} PDB: 3bs8_A* Length = 429 | Back alignment and structure |
|---|
Score = 73.3 bits (181), Expect = 1e-13
Identities = 54/236 (22%), Positives = 89/236 (37%), Gaps = 50/236 (21%)
Query: 411 LEILLKKNHNKIAAIIIEPLVQCAG--GMIMYDSIYLKLVREICNNYNIHLIADEIAVGC 468
++ ++ + IA +I+EP AG G++ +L+ +RE+ LI DE V
Sbjct: 190 VKYAFEQFGDDIACVIVEP---VAGNMGVVPPQPGFLEGLREVTEQNGALLIFDE--VMT 244
Query: 469 G-RTGKFFACEHAEIWPDFLCLSKGITGGYLPL------SLVMTTDKI--YNSIYYKNNI 519
G R + + PD CL K I GG LP+ + +M ++ IY
Sbjct: 245 GFRVAYNCGQGYYGVTPDLTCLGKVIGGG-LPVGAYGGKAEIM--RQVAPSGPIY----- 296
Query: 520 NIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLIT---HPKIIN 576
+ + SGNPLA A TL + + + L P IN
Sbjct: 297 ----QAGTLSGNPLAMAAGYETLVQL-TPESYVEFERKAEMLEAGLRKAAEKHGIPHHIN 351
Query: 577 FRQKGMIWAF--DVIIEDPEQ-----IETFSKKFFVAALKNELLLRPIGNTVYLMP 625
R MI F D + + + ++ F ++ ++ G V+L P
Sbjct: 352 -RAGSMIGIFFTDEPVINYDAAKSSNLQFF-AAYYREMVEQ-------G--VFLPP 396
|
| >2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus} Length = 424 | Back alignment and structure |
|---|
Score = 66.7 bits (164), Expect = 1e-11
Identities = 65/237 (27%), Positives = 97/237 (40%), Gaps = 51/237 (21%)
Query: 411 LEILLKKNHNKIAAIIIEPLVQCAG--GMIMYDSIYLKLVREICNNYNIHLIADEIAVGC 468
L +LK+ +IAAII EP G G+++ +LK + E Y + LIADE V
Sbjct: 189 LREVLKRRGEEIAAIIFEP---VVGNAGVLVPTEDFLKALHE-AKAYGVLLIADE--VMT 242
Query: 469 G-RTGKFFACEHAEIWPDFLCLSKGITGGYLPL------SLVMTTDKI--YNSIYYKNNI 519
G R A E + PD + L K + GG LP +M +K+ +Y
Sbjct: 243 GFRLAFGGATELLGLKPDLVTLGKILGGG-LPAAAYAGRREIM--EKVAPLGPVY----- 294
Query: 520 NIFLHSHSYSGNPLACCAALATLEIFNKD-NILQRISQDMKKITKALTSLIT---HPKII 575
+ + SGNPLA A LATLE+ ++ + ++ L ++ P +
Sbjct: 295 ----QAGTLSGNPLAMAAGLATLELLEENPGYYAYLEDLGARLEAGLKEVLKEKGLPHTV 350
Query: 576 NFRQKGMIWAF--DVIIEDPEQ-----IETFSKKFFVAALKNELLLRPIGNTVYLMP 625
N R MI F + + + E F K+FF L G +Y P
Sbjct: 351 N-RVGSMITVFFTEGPVVTFQDARRTDTELF-KRFFHGLLDR-------G--IYWPP 396
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 62.2 bits (150), Expect = 6e-10
Identities = 103/726 (14%), Positives = 200/726 (27%), Gaps = 256/726 (35%)
Query: 68 YPFLINVPRAGIVHRLD-KNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKL 126
Y +++V V D K+ + S + H++ V + W
Sbjct: 18 YKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMS--KDAVSGTLR-LFW----- 69
Query: 127 NGMINAAIMRNPHNRIKMTV----SKNFN----------AKPAL------TYYERLATG- 165
++ ++ V N+ +P++ +RL
Sbjct: 70 ------TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN 123
Query: 166 -IINKKHISLIRCNLKTGRTH--QIRVHMQWLG-HGIVGDNLYGKKYSKSLIFNRQALHA 221
+ K ++S ++ LK R ++R + + G++G GK + AL
Sbjct: 124 QVFAKYNVSRLQPYLKL-RQALLELRPA-KNVLIDGVLG---SGKT---WV-----ALDV 170
Query: 222 YKLGLIHPKNNLKLKWRINLPDDISKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKN 281
K + W+N + NS + +
Sbjct: 171 CL--------------------SYKVQCKMDFKIF-------WLN-LKNCNS--PETVLE 200
Query: 282 QLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYW-YN 340
L KL + + N T + + KL +++ L+ Y
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRI----------------HSIQAELRRLLKSKPYE 244
Query: 341 KGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSA 400
L + L N + + A N+ K ++TT + + ++A
Sbjct: 245 NCLL-----V-LLNVQNAKAWNAF---NLSC----------KI-LLTTRFKQVTDFLSAA 284
Query: 401 NEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREIC--NNYNIH 458
L + ++ Q L RE+ N +
Sbjct: 285 TTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ-------------DLPREVLTTNPRRLS 331
Query: 459 LIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNN 518
+IA+ I + W D + ++ T I +S+ N
Sbjct: 332 IIAESIR------------DGLATW-DN----------WKHVNCDKLTTIIESSL---NV 365
Query: 519 INIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFR 578
+ + + L +F I ++
Sbjct: 366 LEPAEYRKMFD-----------RLSVFPPS----------AHIP---------TILL--- 392
Query: 579 QKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLL--RPIGNTVYLMPPYILNKNEIQH 636
+IW FDVI D + V L L+ +P +T+ + Y+ K ++++
Sbjct: 393 --SLIW-FDVIKSDVMVV--------VNKLHKYSLVEKQPKESTISIPSIYLELKVKLEN 441
Query: 637 MTS---AIFQTFN------------------------------ELDEVINLFNLPFNDLL 663
+ +I +N E E + LF + F D
Sbjct: 442 EYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFR 501
Query: 664 FRAQKV-HRKY-FDANEIELAVLLSIKTGGCTEDCGY----CPQSTHYNTEITATK--IL 715
F QK+ H ++A+ L L +K Y C Y + A +
Sbjct: 502 FLEQKIRHDSTAWNASGSILNTLQQLKF--------YKPYICDNDPKYERLVNAILDFLP 553
Query: 716 SIESVI 721
IE +
Sbjct: 554 KIEENL 559
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 55.6 bits (133), Expect = 8e-08
Identities = 67/462 (14%), Positives = 133/462 (28%), Gaps = 132/462 (28%)
Query: 542 LEIFNKDNILQRISQDMKKI--TKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETF 599
+ F + + + K I + + +I G + F ++ E++
Sbjct: 26 EDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKD----AVSGTLRLFWTLLSKQEEM--- 78
Query: 600 SKKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNELDEVINLFNLPF 659
+KF L+ N +LM P K E + S + + + E + + N F
Sbjct: 79 VQKFVEEVLRI--------NYKFLMSPI---KTEQRQ-PSMMTRMYIEQRDRLYNDNQVF 126
Query: 660 NDL-LFRAQKVHRKYFDANEIELAVLLSIKT---------GGCTEDCGYCPQSTHYNTEI 709
+ R Q ++ A LL ++ G G
Sbjct: 127 AKYNVSRLQPYL-------KLRQA-LLELRPAKNVLIDGVLGS----G------------ 162
Query: 710 TATKILSIESVITAAQKAKSDGA-TRFCMGAAW----RELKDRD-LDNIENMICEVKKIG 763
K + + A S + W L+ ++ ++ ++
Sbjct: 163 ---K-----TWV-ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNW 213
Query: 764 LETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVG 823
+ + +K + + ++ ++ YEN L L NV+N
Sbjct: 214 TS--------RSDHSSNIK--------LRIHSIQAELRRLLKSKPYENCLLVLLNVQNAK 257
Query: 824 I----NICC--------GGII-GLSESRDQRAELIFQLANLNPYPES---------VPIN 861
N+ C + LS + L L P E
Sbjct: 258 AWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP-DEVKSLLLKYLDCRPQ 316
Query: 862 NL-VQI-KGTPLYGSSI-------LDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQ 912
+L ++ P S I L + + + ++ T+ I S E E +
Sbjct: 317 DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL---TTIIESSLNVLEPAEYRK 373
Query: 913 AFCFLAGANSIFYGD-----KLLTT--DNTKTNDDSKLLKKL 947
F L+ +F LL+ + +D ++ KL
Sbjct: 374 MFDRLS----VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKL 411
|
| >1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2 Length = 467 | Back alignment and structure |
|---|
Score = 51.7 bits (123), Expect = 8e-07
Identities = 47/280 (16%), Positives = 80/280 (28%), Gaps = 46/280 (16%)
Query: 299 VIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNS--- 355
L +K L Y + G A + + Y + K + + N
Sbjct: 78 YYDLKDKAKELFNYD--YIIPAHQGRGAENILFPV--LLKYKQKEGKAKNPVFISNFHFD 133
Query: 356 ---YHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLE 412
H E G A+ + ++ + KG+ I L+
Sbjct: 134 TTAAHVELNGCKAINIVTE-------------KAFDSETYDDWKGDFD-------IKKLK 173
Query: 413 ILLKKNH-NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVG---- 467
+ ++ + I AI+ AGG LK V EI + I ++ D
Sbjct: 174 ENIAQHGADNIVAIVSTVTCNSAGGQP-VSMSNLKEVYEIAKQHGIFVVMDSARFCENAY 232
Query: 468 --CGRTGKFFACEHAEIWPDFLCLSKGIT-----GGYLPL-SLVMTTDKIYNSIYYKNNI 519
R K+ E+ D + +T L + LV D +
Sbjct: 233 FIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNIGGLVAIRDNEEIFTLARQRC 292
Query: 520 NIFLHSHSYSGNPLACCAALA--TLEIFNKDNILQRISQD 557
+Y G AA+ E ++ + RI Q
Sbjct: 293 VPMEGFVTYGGLAGRDMAAMVQGLEEGTEEEYLHYRIGQV 332
|
| >2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A* Length = 456 | Back alignment and structure |
|---|
Score = 44.3 bits (104), Expect = 2e-04
Identities = 48/303 (15%), Positives = 85/303 (28%), Gaps = 61/303 (20%)
Query: 297 KPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNS- 355
+ L + L +K H G A + ++ K N
Sbjct: 75 ENFYHLERTVQELFGFK--HIVPTHQGRGAENLLSQL----------AIKPGQYVAGNMY 122
Query: 356 -----YHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFD 410
YH E GA+ V ++ KG+ +
Sbjct: 123 FTTTRYHQEKNGAVFVDIVR-------------DEAHDAGLNIAFKGDID-------LKK 162
Query: 411 LEILLKKNH-NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIAD--EIAVG 467
L+ L+ + IA I + V AGG ++ VRE+ + I + D
Sbjct: 163 LQKLIDEKGAENIAYICLAVTVNLAGGQP-VSMANMRAVRELTEAHGIKVFYDATRCVEN 221
Query: 468 C----GRTGKFFACEHAEIWPDF--------LCLSKGITGGYLPLSLVMTTDK-IYNSIY 514
+ F AEI + + K + D +++S
Sbjct: 222 AYFIKEQEQGFENKSIAEIVHEMFSYADGCTMSGKKDCLVNI--GGFLCMNDDEMFSSA- 278
Query: 515 YKNNINIFLHSHSYSGNPLACCAALAT--LEIFNKDNILQRISQDMKKITKALTSLITHP 572
K + ++ SY G A+A E + I R+ Q K + +
Sbjct: 279 -KELVVVYEGMPSYGGLAGRDMEAMAIGLREAMQYEYIEHRVKQVRYLGDKLKAAGVPIV 337
Query: 573 KII 575
+ +
Sbjct: 338 EPV 340
|
| >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 | Back alignment and structure |
|---|
Score = 41.1 bits (95), Expect = 4e-04
Identities = 14/55 (25%), Positives = 19/55 (34%), Gaps = 28/55 (50%)
Query: 280 KNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMS 334
K L KL+ +SL KL Y D A A +A+K +
Sbjct: 19 KQALKKLQ-------------------ASL---KL----YADDSAPA--LAIKAT 45
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 965 | |||
| 4e3q_A | 473 | Pyruvate transaminase; aminotransferase, transfera | 100.0 | |
| 4atq_A | 456 | 4-aminobutyrate transaminase; transferase; HET: PL | 100.0 | |
| 3i5t_A | 476 | Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N | 100.0 | |
| 4ao9_A | 454 | Beta-phenylalanine aminotransferase; HET: PLP; 1.5 | 100.0 | |
| 3hmu_A | 472 | Aminotransferase, class III; structural genomics, | 100.0 | |
| 4a0g_A | 831 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 100.0 | |
| 3tfu_A | 457 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 100.0 | |
| 4a6r_A | 459 | Omega transaminase; transferase, PLP-binding enzym | 100.0 | |
| 3gju_A | 460 | Putative aminotransferase; pyridoxal phosphate, PL | 100.0 | |
| 3dod_A | 448 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 100.0 | |
| 3n5m_A | 452 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 100.0 | |
| 4ffc_A | 453 | 4-aminobutyrate aminotransferase (GABT); structura | 100.0 | |
| 3oks_A | 451 | 4-aminobutyrate transaminase; ssgcid, transferase, | 100.0 | |
| 3i4j_A | 430 | Aminotransferase, class III; structural GENOMICS,N | 100.0 | |
| 3a8u_X | 449 | Omega-amino acid--pyruvate aminotransferase; large | 100.0 | |
| 1z7d_A | 433 | Ornithine aminotransferase; structural genomics co | 100.0 | |
| 2oat_A | 439 | Ornithine aminotransferase; 5-fluoromethylornithin | 100.0 | |
| 3l44_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha | 100.0 | |
| 1ohv_A | 472 | 4-aminobutyrate aminotransferase; PLP-dependent en | 100.0 | |
| 2yky_A | 465 | Beta-transaminase; transferase; HET: PLP SFE; 1.69 | 100.0 | |
| 3nx3_A | 395 | Acoat, acetylornithine aminotransferase; csgid, st | 100.0 | |
| 3k28_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn | 100.0 | |
| 3dxv_A | 439 | Alpha-amino-epsilon-caprolactam racemase; fold-TYP | 100.0 | |
| 1s0a_A | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 100.0 | |
| 2cjg_A | 449 | L-lysine-epsilon aminotransferase; internal aldimi | 100.0 | |
| 4e77_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase; structur | 100.0 | |
| 1zod_A | 433 | DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, | 100.0 | |
| 2pb2_A | 420 | Acetylornithine/succinyldiaminopimelate aminotran; | 100.0 | |
| 3fq8_A | 427 | Glutamate-1-semialdehyde 2,1-aminomutase; drug res | 100.0 | |
| 2eo5_A | 419 | 419AA long hypothetical aminotransferase; PLP enzy | 100.0 | |
| 2epj_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 100.0 | |
| 2e7u_A | 424 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 100.0 | |
| 3ruy_A | 392 | Ornithine aminotransferase; structural genomics, c | 100.0 | |
| 2cy8_A | 453 | D-phgat, D-phenylglycine aminotransferase; structu | 100.0 | |
| 4adb_A | 406 | Succinylornithine transaminase; transferase, PLP e | 100.0 | |
| 1sff_A | 426 | 4-aminobutyrate aminotransferase; enzyme complexes | 100.0 | |
| 1v9f_A | 325 | Ribosomal large subunit pseudouridine synthase D; | 100.0 | |
| 2i82_A | 217 | Ribosomal large subunit pseudouridine synthase A; | 100.0 | |
| 2ord_A | 397 | Acoat, acetylornithine aminotransferase; TM1785, a | 100.0 | |
| 3t7v_A | 350 | Methylornithine synthase PYLB; TIM-barrel fold, mu | 100.0 | |
| 1r30_A | 369 | Biotin synthase; SAM radical protein, TIM barrel, | 100.0 | |
| 1v9k_A | 228 | Ribosomal large subunit pseudouridine synthase C; | 100.0 | |
| 1vef_A | 395 | Acetylornithine/acetyl-lysine aminotransferase; PL | 100.0 | |
| 3iix_A | 348 | Biotin synthetase, putative; adoMet radical, SAM r | 100.0 | |
| 2eh6_A | 375 | Acoat, acetylornithine aminotransferase; ARGD, str | 100.0 | |
| 2oml_A | 189 | Ribosomal large subunit pseudouridine synthase E; | 100.0 | |
| 2olw_A | 217 | Ribosomal large subunit pseudouridine synthase E; | 99.98 | |
| 3l8a_A | 421 | METC, putative aminotransferase, probable beta-cys | 99.98 | |
| 2w8t_A | 427 | SPT, serine palmitoyltransferase; HET: LLP; 1.25A | 99.97 | |
| 1ksk_A | 234 | Ribosomal small subunit pseudouridine synthase A; | 99.97 | |
| 1vio_A | 243 | Ribosomal small subunit pseudouridine synthase A; | 99.97 | |
| 3tqx_A | 399 | 2-amino-3-ketobutyrate coenzyme A ligase; energy m | 99.96 | |
| 1fc4_A | 401 | 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino | 99.96 | |
| 3kki_A | 409 | CAI-1 autoinducer synthase; quorum sensing, CQSA, | 99.96 | |
| 3fdb_A | 377 | Beta C-S lyase, putative PLP-dependent beta-cystat | 99.96 | |
| 3dzz_A | 391 | Putative pyridoxal 5'-phosphate-dependent C-S LYA; | 99.96 | |
| 1yiz_A | 429 | Kynurenine aminotransferase; glutamine transaminas | 99.95 | |
| 1bs0_A | 384 | Protein (8-amino-7-oxonanoate synthase); PLP-depen | 99.95 | |
| 1d2f_A | 390 | MALY protein; aminotransferase fold, large PLP-bin | 99.95 | |
| 3kax_A | 383 | Aminotransferase, classes I and II; PLP, C-S lyase | 99.95 | |
| 4dq6_A | 391 | Putative pyridoxal phosphate-dependent transferas; | 99.95 | |
| 3a2b_A | 398 | Serine palmitoyltransferase; vitamin B6-dependent | 99.95 | |
| 2gml_A | 237 | Ribosomal large subunit pseudouridine synthase F; | 99.94 | |
| 3jtx_A | 396 | Aminotransferase; NP_283882.1, structural genomics | 99.94 | |
| 3b46_A | 447 | Aminotransferase BNA3; kynurenine aminotransferase | 99.94 | |
| 1c7n_A | 399 | Cystalysin; transferase, aminotransferase, pyridox | 99.94 | |
| 3dh3_A | 290 | Ribosomal large subunit pseudouridine synthase F; | 99.94 | |
| 2x5d_A | 412 | Probable aminotransferase; HET: LLP PLP; 2.25A {Ps | 99.94 | |
| 1vp4_A | 425 | Aminotransferase, putative; structural genomics, j | 99.94 | |
| 2zc0_A | 407 | Alanine glyoxylate transaminase; alanine:glyoxylat | 99.94 | |
| 3ftb_A | 361 | Histidinol-phosphate aminotransferase; structural | 99.94 | |
| 3ly1_A | 354 | Putative histidinol-phosphate aminotransferase; st | 99.94 | |
| 3euc_A | 367 | Histidinol-phosphate aminotransferase 2; YP_297314 | 99.94 | |
| 2o1b_A | 404 | Aminotransferase, class I; aminotrasferase; HET: P | 99.94 | |
| 1lc5_A | 364 | COBD, L-threonine-O-3-phosphate decarboxylase; PLP | 99.94 | |
| 1j32_A | 388 | Aspartate aminotransferase; HET: PLP; 2.10A {Phorm | 99.94 | |
| 2dou_A | 376 | Probable N-succinyldiaminopimelate aminotransfera; | 99.94 | |
| 3ffh_A | 363 | Histidinol-phosphate aminotransferase; APC88260, l | 99.94 | |
| 3aow_A | 448 | Putative uncharacterized protein PH0207; protein-P | 99.94 | |
| 3ezs_A | 376 | Aminotransferase ASPB; NP_207418.1, structural gen | 99.94 | |
| 2zyj_A | 397 | Alpha-aminodipate aminotransferase; alpha-aminoadi | 99.93 | |
| 3nra_A | 407 | Aspartate aminotransferase; structural genomics, j | 99.93 | |
| 2z61_A | 370 | Probable aspartate aminotransferase 2; amino acid | 99.93 | |
| 3dyd_A | 427 | Tyrosine aminotransferase; PLP, SGC, structural ge | 99.93 | |
| 1o4s_A | 389 | Aspartate aminotransferase; TM1255, structural gen | 99.93 | |
| 3h14_A | 391 | Aminotransferase, classes I and II; YP_167802.1, S | 99.93 | |
| 3piu_A | 435 | 1-aminocyclopropane-1-carboxylate synthase; fruit | 99.93 | |
| 3b1d_A | 392 | Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ | 99.88 | |
| 1u08_A | 386 | Hypothetical aminotransferase YBDL; alpha beta pro | 99.93 | |
| 1v2d_A | 381 | Glutamine aminotransferase; PLP, riken structural | 99.93 | |
| 3cq5_A | 369 | Histidinol-phosphate aminotransferase; PLP, PMP, a | 99.93 | |
| 1gd9_A | 389 | Aspartate aminotransferase; pyridoxal enzyme, temp | 99.93 | |
| 3g0t_A | 437 | Putative aminotransferase; NP_905498.1, putative a | 99.93 | |
| 1iay_A | 428 | ACC synthase 2, 1-aminocyclopropane-1-carboxylate | 99.93 | |
| 3ele_A | 398 | Amino transferase; RER070207001803, structural gen | 99.93 | |
| 1xi9_A | 406 | Putative transaminase; alanine aminotransferase, s | 99.93 | |
| 2o0r_A | 411 | RV0858C (N-succinyldiaminopimelate aminotransfera; | 99.93 | |
| 2bwn_A | 401 | 5-aminolevulinate synthase; tetrapyrrole biosynthe | 99.92 | |
| 3hdo_A | 360 | Histidinol-phosphate aminotransferase; PSI-II, his | 99.92 | |
| 2gb3_A | 409 | Aspartate aminotransferase; TM1698, structural gen | 99.92 | |
| 1fg7_A | 356 | Histidinol phosphate aminotransferase; HISC, histi | 99.92 | |
| 1elu_A | 390 | L-cysteine/L-cystine C-S lyase; FES cluster biosyn | 99.92 | |
| 3fvs_A | 422 | Kynurenine--oxoglutarate transaminase 1; alpha bet | 99.92 | |
| 2ay1_A | 394 | Aroat, aromatic amino acid aminotransferase; HET: | 99.92 | |
| 2x5f_A | 430 | Aspartate_tyrosine_phenylalanine pyridoxal-5' phos | 99.92 | |
| 2q7w_A | 396 | Aspartate aminotransferase; mechanism-based inhibi | 99.92 | |
| 1ajs_A | 412 | Aspartate aminotransferase; PIG, in the presence o | 99.91 | |
| 3op7_A | 375 | Aminotransferase class I and II; PLP-dependent tra | 99.91 | |
| 3get_A | 365 | Histidinol-phosphate aminotransferase; NP_281508.1 | 99.91 | |
| 3qgu_A | 449 | LL-diaminopimelate aminotransferase; L-lysine, pyr | 99.91 | |
| 3e2y_A | 410 | Kynurenine-oxoglutarate transaminase 3; alpha beta | 99.91 | |
| 1kmj_A | 406 | Selenocysteine lyase; persulfide perselenide NIFS | 99.91 | |
| 3rq1_A | 418 | Aminotransferase class I and II; structural genomi | 99.91 | |
| 3f9t_A | 397 | TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L | 99.91 | |
| 3t18_A | 413 | Aminotransferase class I and II; PSI-biology, MCSG | 99.91 | |
| 3fkd_A | 350 | L-threonine-O-3-phosphate decarboxylase; structura | 99.91 | |
| 1bw0_A | 416 | TAT, protein (tyrosine aminotransferase); tyrosine | 99.9 | |
| 1t3i_A | 420 | Probable cysteine desulfurase; PLP-binding enzyme, | 99.9 | |
| 3ke3_A | 379 | Putative serine-pyruvate aminotransferase; structu | 99.9 | |
| 1vjo_A | 393 | Alanine--glyoxylate aminotransferase; 17130350, AL | 99.9 | |
| 2dr1_A | 386 | PH1308 protein, 386AA long hypothetical serine ami | 99.9 | |
| 3asa_A | 400 | LL-diaminopimelate aminotransferase; PLP dependent | 99.89 | |
| 4f4e_A | 420 | Aromatic-amino-acid aminotransferase; ssgcid, stru | 99.89 | |
| 1b5p_A | 385 | Protein (aspartate aminotransferase); pyridoxal en | 99.89 | |
| 1svv_A | 359 | Threonine aldolase; structural genomics, structura | 99.89 | |
| 3ei9_A | 432 | LL-diaminopimelate aminotransferase; lysine biosyn | 99.89 | |
| 3lvm_A | 423 | Cysteine desulfurase; structural genomics, montrea | 99.89 | |
| 2r2n_A | 425 | Kynurenine/alpha-aminoadipate aminotransferase mit | 99.89 | |
| 3ez1_A | 423 | Aminotransferase MOCR family; YP_604413.1, struct | 99.89 | |
| 2e7j_A | 371 | SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st | 99.89 | |
| 3fsl_A | 397 | Aromatic-amino-acid aminotransferase; tyrosine ami | 99.88 | |
| 1qz9_A | 416 | Kynureninase; kynurenine, tryptophan, PLP, vitamin | 99.88 | |
| 1ax4_A | 467 | Tryptophanase; tryptophan biosynthesis, tryptophan | 99.88 | |
| 3p1t_A | 337 | Putative histidinol-phosphate aminotransferase; PL | 99.88 | |
| 1yaa_A | 412 | Aspartate aminotransferase; HET: PLP; 2.05A {Sacch | 99.88 | |
| 3cai_A | 406 | Possible aminotransferase; RV3778C; 1.80A {Mycobac | 99.88 | |
| 3ppl_A | 427 | Aspartate aminotransferase; dimer, PLP-dependent t | 99.87 | |
| 1eg5_A | 384 | Aminotransferase; PLP-dependent enzymes, iron-sulf | 99.87 | |
| 1uu1_A | 335 | Histidinol-phosphate aminotransferase; histidine b | 99.87 | |
| 3g7q_A | 417 | Valine-pyruvate aminotransferase; NP_462565.1, str | 99.87 | |
| 3d6k_A | 422 | Putative aminotransferase; APC82464, corynebacteri | 99.87 | |
| 3e9k_A | 465 | Kynureninase; kynurenine-L-hydrolase, kynurenine h | 99.87 | |
| 3zrp_A | 384 | Serine-pyruvate aminotransferase (AGXT); HET: PLP; | 99.87 | |
| 1m32_A | 366 | 2-aminoethylphosphonate-pyruvate aminotransferase; | 99.87 | |
| 1v72_A | 356 | Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2 | 99.86 | |
| 3if2_A | 444 | Aminotransferase; YP_265399.1, structura genomics, | 99.86 | |
| 2oqx_A | 467 | Tryptophanase; lyase, pyridoxal phosphate, tryptop | 99.86 | |
| 3kgw_A | 393 | Alanine-glyoxylate aminotransferase; AAH25799.1, p | 99.86 | |
| 3f0h_A | 376 | Aminotransferase; RER070207000802, structural geno | 99.86 | |
| 2rfv_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate, PL | 99.86 | |
| 2dkj_A | 407 | Serine hydroxymethyltransferase; PLP dependent enz | 99.86 | |
| 2ez2_A | 456 | Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend | 99.86 | |
| 3nnk_A | 411 | Ureidoglycine-glyoxylate aminotransferase; PLP-dep | 99.86 | |
| 2z9v_A | 392 | Aspartate aminotransferase; pyridoxamine, pyruvate | 99.86 | |
| 2qgq_A | 304 | Protein TM_1862; alpha-beta protein, structural ge | 99.85 | |
| 3mad_A | 514 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.85 | |
| 2huf_A | 393 | Alanine glyoxylate aminotransferase; alpha and bet | 99.85 | |
| 3vax_A | 400 | Putative uncharacterized protein DNDA; desulfurase | 99.85 | |
| 3a9z_A | 432 | Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph | 99.85 | |
| 2oga_A | 399 | Transaminase; PLP-dependent enzyme, desosamine, de | 99.85 | |
| 1cs1_A | 386 | CGS, protein (cystathionine gamma-synthase); lyase | 99.85 | |
| 4hvk_A | 382 | Probable cysteine desulfurase 2; transferase and I | 99.85 | |
| 4eb5_A | 382 | Probable cysteine desulfurase 2; scaffold, transfe | 99.84 | |
| 3qhx_A | 392 | Cystathionine gamma-synthase METB (CGS); structura | 99.84 | |
| 2ch1_A | 396 | 3-hydroxykynurenine transaminase; PLP-enzyme, kynu | 99.84 | |
| 2cb1_A | 412 | O-acetyl homoserine sulfhydrylase; PLP enzyme, lya | 99.84 | |
| 2yrr_A | 353 | Aminotransferase, class V; structural genomics, NP | 99.84 | |
| 3f6t_A | 533 | Aspartate aminotransferase; YP_194538.1, STRU geno | 99.84 | |
| 1iug_A | 352 | Putative aspartate aminotransferase; wild type, py | 99.84 | |
| 3meb_A | 448 | Aspartate aminotransferase; pyridoxal PHOS transfe | 99.84 | |
| 3isl_A | 416 | Purine catabolism protein PUCG; pyridoxalphosphate | 99.84 | |
| 1gc0_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate; HE | 99.84 | |
| 3lws_A | 357 | Aromatic amino acid beta-eliminating lyase/threoni | 99.83 | |
| 1wyu_B | 474 | Glycine dehydrogenase subunit 2 (P-protein); alpha | 99.82 | |
| 2vi8_A | 405 | Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, | 99.82 | |
| 2qma_A | 497 | Diaminobutyrate-pyruvate transaminase and L-2,4- d | 99.82 | |
| 3tcm_A | 500 | Alanine aminotransferase 2; pyridoxal phosphate (P | 99.82 | |
| 3acz_A | 389 | Methionine gamma-lyase; L-methionine; HET: LLP; 1. | 99.82 | |
| 4eu1_A | 409 | Mitochondrial aspartate aminotransferase; ssgcid, | 99.82 | |
| 3pj0_A | 359 | LMO0305 protein; structural genomics, joint center | 99.82 | |
| 1jg8_A | 347 | L-ALLO-threonine aldolase; glycine biosynthesis, p | 99.81 | |
| 3mc6_A | 497 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.81 | |
| 3dr4_A | 391 | Putative perosamine synthetase; deoxysugar, pyrido | 99.81 | |
| 3uwc_A | 374 | Nucleotide-sugar aminotransferase; lipopolysacchar | 99.81 | |
| 7aat_A | 401 | Aspartate aminotransferase; transferase(aminotrans | 99.8 | |
| 3frk_A | 373 | QDTB; aminotransferase, sugar-modification, natura | 99.8 | |
| 3gbx_A | 420 | Serine hydroxymethyltransferase; structural genomi | 99.8 | |
| 3nmy_A | 400 | Xometc, cystathionine gamma-lyase-like protein; Cy | 99.8 | |
| 3ndn_A | 414 | O-succinylhomoserine sulfhydrylase; seattle struct | 99.79 | |
| 3nyt_A | 367 | Aminotransferase WBPE; PLP binding, nucleotide-sug | 99.79 | |
| 1mdo_A | 393 | ARNB aminotransferase; type 1 aminotransferase fol | 99.79 | |
| 3h7f_A | 447 | Serine hydroxymethyltransferase 1; cytoplasm, one- | 99.79 | |
| 2bkw_A | 385 | Alanine-glyoxylate aminotransferase 1; analine-gly | 99.79 | |
| 2fnu_A | 375 | Aminotransferase; protein-product complex, structu | 99.79 | |
| 1e5e_A | 404 | MGL, methionine gamma-lyase; methionine biosynthes | 99.78 | |
| 3ecd_A | 425 | Serine hydroxymethyltransferase 2; ssgcid, decode, | 99.78 | |
| 1pff_A | 331 | Methionine gamma-lyase; homocysteine; 2.50A {Trich | 99.78 | |
| 2po3_A | 424 | 4-dehydrase; external aldimine, PLP, aminotransfer | 99.78 | |
| 1b9h_A | 388 | AHBA synthase, protein (3-amino-5-hydroxybenzoic a | 99.78 | |
| 3ihj_A | 498 | Alanine aminotransferase 2; helix, structural geno | 99.78 | |
| 2ctz_A | 421 | O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac | 99.78 | |
| 1olt_A | 457 | Oxygen-independent coproporphyrinogen III oxidase; | 99.77 | |
| 2aeu_A | 374 | Hypothetical protein MJ0158; selenocysteine syntha | 99.77 | |
| 3k7y_A | 405 | Aspartate aminotransferase; aminotrans pyridoxal p | 99.76 | |
| 1o69_A | 394 | Aminotransferase; structural genomics, unknown fun | 99.76 | |
| 3ffr_A | 362 | Phosphoserine aminotransferase SERC; structural ge | 99.76 | |
| 3b8x_A | 390 | WBDK, pyridoxamine 5-phosphate-dependent dehydrase | 99.75 | |
| 3n0l_A | 417 | Serine hydroxymethyltransferase; alpha beta class, | 99.75 | |
| 1ibj_A | 464 | CBL, cystathionine beta-lyase; PLP-dependent enzym | 99.74 | |
| 3cog_A | 403 | Cystathionine gamma-lyase; CTH, PLP, propargylglyc | 99.74 | |
| 1n8p_A | 393 | Cystathionine gamma-lyase; three open alpha/beta s | 99.74 | |
| 1qgn_A | 445 | Protein (cystathionine gamma-synthase); methionine | 99.73 | |
| 2zy4_A | 546 | L-aspartate beta-decarboxylase; pyridoxal 5'-phosp | 99.72 | |
| 3bb8_A | 437 | CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat | 99.72 | |
| 2c81_A | 418 | Glutamine-2-deoxy-scyllo-inosose aminotransferase; | 99.72 | |
| 2jis_A | 515 | Cysteine sulfinic acid decarboxylase; pyridoxal ph | 99.71 | |
| 2okj_A | 504 | Glutamate decarboxylase 1; PLP-dependent decarboxy | 99.71 | |
| 2dgk_A | 452 | GAD-beta, GADB, glutamate decarboxylase beta; gadb | 99.68 | |
| 1tv8_A | 340 | MOAA, molybdenum cofactor biosynthesis protein A; | 99.67 | |
| 3ht4_A | 431 | Aluminum resistance protein; lyase, putative cysta | 99.67 | |
| 2z67_A | 456 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.66 | |
| 2x3l_A | 446 | ORN/Lys/Arg decarboxylase family protein; lyase; H | 99.66 | |
| 4h51_A | 420 | Aspartate aminotransferase; ssgcid, structural gen | 99.65 | |
| 2fq6_A | 415 | Cystathionine beta-lyase; protein-inhibitor comple | 99.64 | |
| 3ri6_A | 430 | O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate | 99.63 | |
| 2yx0_A | 342 | Radical SAM enzyme; predicted tRNA modification en | 99.63 | |
| 3hbx_A | 502 | GAD 1, glutamate decarboxylase 1; calmodulin-bindi | 99.62 | |
| 3ju7_A | 377 | Putative PLP-dependent aminotransferase; NP_978343 | 99.61 | |
| 1w23_A | 360 | Phosphoserine aminotransferase; pyridoxal-5'-phosp | 99.61 | |
| 3c8f_A | 245 | Pyruvate formate-lyase 1-activating enzyme; adoMet | 99.6 | |
| 1rv3_A | 483 | Serine hydroxymethyltransferase, cytosolic; one-ca | 99.6 | |
| 3vp6_A | 511 | Glutamate decarboxylase 1; catalytic loop SWAP, ly | 99.59 | |
| 2c0r_A | 362 | PSAT, phosphoserine aminotransferase; pyridoxal-5' | 99.58 | |
| 2a7v_A | 490 | Serine hydroxymethyltransferase; structural genomi | 99.58 | |
| 3bwn_A | 391 | AT1G70560, L-tryptophan aminotransferase; auxin sy | 99.56 | |
| 4e1o_A | 481 | HDC, histidine decarboxylase; lyase; HET: PLP PVH; | 99.55 | |
| 2fyf_A | 398 | PSAT, phosphoserine aminotransferase; PLP-dependen | 99.55 | |
| 1js3_A | 486 | DDC;, DOPA decarboxylase; carbidopa, parkinson'S d | 99.53 | |
| 3jzl_A | 409 | Putative cystathionine beta-lyase involved in ALU | 99.52 | |
| 3k40_A | 475 | Aromatic-L-amino-acid decarboxylase; PLP dependent | 99.51 | |
| 2z2u_A | 311 | UPF0026 protein MJ0257; metal binding protein; 2.4 | 99.48 | |
| 1wyu_A | 438 | Glycine dehydrogenase (decarboxylating) subunit 1; | 99.45 | |
| 3hvy_A | 427 | Cystathionine beta-lyase family protein, YNBB B.S | 99.45 | |
| 3i16_A | 427 | Aluminum resistance protein; YP_878183.1, carbon-s | 99.44 | |
| 1c4k_A | 730 | Protein (ornithine decarboxylase); lyase; HET: PLP | 99.41 | |
| 2hox_A | 427 | ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA | 99.4 | |
| 3rfa_A | 404 | Ribosomal RNA large subunit methyltransferase N; r | 99.37 | |
| 2vyc_A | 755 | Biodegradative arginine decarboxylase; pyridoxal p | 99.33 | |
| 2a5h_A | 416 | L-lysine 2,3-aminomutase; radical SAM, four-iron-f | 99.32 | |
| 3e77_A | 377 | Phosphoserine aminotransferase; SERC, PLP, structu | 99.31 | |
| 3qm2_A | 386 | Phosphoserine aminotransferase; structural genomic | 99.27 | |
| 3n75_A | 715 | LDC, lysine decarboxylase, inducible; pyridoxal-5' | 99.2 | |
| 3m5u_A | 361 | Phosphoserine aminotransferase; alpha-beta half sa | 99.19 | |
| 3hl2_A | 501 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.05 | |
| 3bc8_A | 450 | O-phosphoseryl-tRNA(SEC) selenium transferase; dis | 98.9 | |
| 3can_A | 182 | Pyruvate-formate lyase-activating enzyme; structur | 98.66 | |
| 2cw6_A | 298 | Hydroxymethylglutaryl-COA lyase, mitochondrial; HM | 98.31 | |
| 3ou5_A | 490 | Serine hydroxymethyltransferase, mitochondrial; st | 98.25 | |
| 1ydo_A | 307 | HMG-COA lyase; TIM-barrel protein, structural geno | 98.17 | |
| 1ydn_A | 295 | Hydroxymethylglutaryl-COA lyase; TIM-barrel protei | 98.16 | |
| 4fhd_A | 368 | Spore photoproduct lyase; partial TIM-barrel, DNA | 98.06 | |
| 2ftp_A | 302 | Hydroxymethylglutaryl-COA lyase; structural genomi | 98.06 | |
| 3ble_A | 337 | Citramalate synthase from leptospira interrogans; | 97.95 | |
| 1nvm_A | 345 | HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered | 97.57 | |
| 3rmj_A | 370 | 2-isopropylmalate synthase; LEUA, truncation, neis | 97.5 | |
| 3ewb_X | 293 | 2-isopropylmalate synthase; LEUA, structural genom | 97.49 | |
| 3eeg_A | 325 | 2-isopropylmalate synthase; 11106D, beta barrel, P | 97.42 | |
| 1rqb_A | 539 | Transcarboxylase 5S subunit; TIM-barrel, carbamyla | 97.26 | |
| 2nx9_A | 464 | Oxaloacetate decarboxylase 2, subunit alpha; carbo | 97.19 | |
| 3bg3_A | 718 | Pyruvate carboxylase, mitochondrial; TIM barrel, A | 96.99 | |
| 3ivs_A | 423 | Homocitrate synthase, mitochondrial; TIM barrel, m | 96.97 | |
| 3inp_A | 246 | D-ribulose-phosphate 3-epimerase; IDP02542, isomer | 96.96 | |
| 1h5y_A | 253 | HISF; histidine biosynthesis, TIM-barrel; 2.0A {Py | 96.83 | |
| 1k8w_A | 327 | TRNA pseudouridine synthase B; protein-RNA complex | 96.67 | |
| 2ztj_A | 382 | Homocitrate synthase; (beta/alpha)8 TIM barrel, su | 96.62 | |
| 1r3e_A | 309 | TRNA pseudouridine synthase B; RNA modification, p | 96.52 | |
| 1sgv_A | 316 | TRNA pseudouridine synthase B; hinged motion, tRNA | 96.45 | |
| 3k13_A | 300 | 5-methyltetrahydrofolate-homocysteine methyltrans; | 96.35 | |
| 2aus_C | 334 | Pseudouridine synthase; isomerase, structural prot | 96.33 | |
| 2apo_A | 357 | Probable tRNA pseudouridine synthase B; protein-pr | 96.22 | |
| 3u28_A | 400 | H/ACA ribonucleoprotein complex subunit 4; pseudou | 96.14 | |
| 3qja_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 96.12 | |
| 3lot_A | 314 | Uncharacterized protein; protein of unknown functi | 95.86 | |
| 3ovp_A | 228 | Ribulose-phosphate 3-epimerase; iron binding, isom | 95.72 | |
| 3ctl_A | 231 | D-allulose-6-phosphate 3-epimerase; D-glucitol 6-p | 95.67 | |
| 1eye_A | 280 | DHPS 1, dihydropteroate synthase I; alpha-beta bar | 95.47 | |
| 1thf_D | 253 | HISF protein; thermophIle, TIM-barrel, histidine b | 95.29 | |
| 3tsm_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 95.26 | |
| 2p10_A | 286 | MLL9387 protein; putative phosphonopyruvate hydrol | 95.2 | |
| 3e49_A | 311 | Uncharacterized protein DUF849 with A TIM barrel; | 95.08 | |
| 2yci_X | 271 | 5-methyltetrahydrofolate corrinoid/iron sulfur PR | 95.01 | |
| 3e02_A | 311 | Uncharacterized protein DUF849; structural genomic | 94.95 | |
| 1tqj_A | 230 | Ribulose-phosphate 3-epimerase; beta-alpha barrel | 94.94 | |
| 2ekc_A | 262 | AQ_1548, tryptophan synthase alpha chain; structur | 94.52 | |
| 3no5_A | 275 | Uncharacterized protein; PFAM DUF849 domain contai | 94.52 | |
| 1f6y_A | 262 | 5-methyltetrahydrofolate corrinoid/iron sulfur PR | 94.26 | |
| 1aj0_A | 282 | DHPS, dihydropteroate synthase; antibiotic, resist | 94.22 | |
| 2qf7_A | 1165 | Pyruvate carboxylase protein; multi-domain, multi- | 94.16 | |
| 1x7f_A | 385 | Outer surface protein; structural genomics, unknow | 94.11 | |
| 3tr9_A | 314 | Dihydropteroate synthase; biosynthesis of cofactor | 94.06 | |
| 3dxi_A | 320 | Putative aldolase; TIM barrel, 11107N, PSI2, NYSGX | 93.99 | |
| 1ka9_F | 252 | Imidazole glycerol phosphtate synthase; riken stru | 93.91 | |
| 2dqw_A | 294 | Dihydropteroate synthase; dimer, structural genomi | 93.88 | |
| 3vnd_A | 267 | TSA, tryptophan synthase alpha chain; psychrophili | 93.83 | |
| 2v82_A | 212 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; l | 93.72 | |
| 3c6c_A | 316 | 3-keto-5-aminohexanoate cleavage enzyme; DUF849 fa | 93.48 | |
| 2y88_A | 244 | Phosphoribosyl isomerase A; aromatic amino acid bi | 93.36 | |
| 2y5s_A | 294 | DHPS, dihydropteroate synthase; transferase, folat | 93.34 | |
| 2y7e_A | 282 | 3-keto-5-aminohexanoate cleavage enzyme; lyase, al | 93.31 | |
| 3hq1_A | 644 | 2-isopropylmalate synthase; LEUA, mycobacterium tu | 93.3 | |
| 1vzw_A | 244 | Phosphoribosyl isomerase A; histidine biosynthesis | 93.13 | |
| 3f4w_A | 211 | Putative hexulose 6 phosphate synthase; humps, mal | 92.63 | |
| 2vp8_A | 318 | Dihydropteroate synthase 2; RV1207 transferase, fo | 92.58 | |
| 1qop_A | 268 | Tryptophan synthase alpha chain; lyase, carbon-oxy | 92.57 | |
| 3cu2_A | 237 | Ribulose-5-phosphate 3-epimerase; YP_718263.1, rib | 92.53 | |
| 2w6r_A | 266 | Imidazole glycerol phosphate synthase subunit HISF | 92.53 | |
| 3ajx_A | 207 | 3-hexulose-6-phosphate synthase; HPS, OMPDC supraf | 92.48 | |
| 1rd5_A | 262 | Tryptophan synthase alpha chain, chloroplast; hydr | 92.36 | |
| 1tx2_A | 297 | DHPS, dihydropteroate synthase; folate biosynthesi | 92.13 | |
| 4hb7_A | 270 | Dihydropteroate synthase; transferase; 1.95A {Stap | 92.04 | |
| 2yw3_A | 207 | 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deox | 92.02 | |
| 1rpx_A | 230 | Protein (ribulose-phosphate 3-epimerase); chloropl | 91.96 | |
| 2wqp_A | 349 | Polysialic acid capsule biosynthesis protein SIAC; | 91.85 | |
| 4gj1_A | 243 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me | 91.76 | |
| 3o63_A | 243 | Probable thiamine-phosphate pyrophosphorylase; thi | 91.41 | |
| 3nav_A | 271 | Tryptophan synthase alpha chain; alpha subunit, st | 91.4 | |
| 2vef_A | 314 | Dihydropteroate synthase; antibiotic resistance, t | 91.32 | |
| 1h1y_A | 228 | D-ribulose-5-phosphate 3-epimerase; oxidative pent | 91.25 | |
| 1hg3_A | 225 | Triosephosphate isomerase; thermostability, tetram | 91.03 | |
| 2fli_A | 220 | Ribulose-phosphate 3-epimerase; (beta/alpha)8-barr | 90.97 | |
| 4e38_A | 232 | Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho | 90.86 | |
| 1vli_A | 385 | Spore coat polysaccharide biosynthesis protein SP; | 90.84 | |
| 1jub_A | 311 | Dihydroorotate dehydrogenase A; homodimer, alpha-b | 90.67 | |
| 3tdn_A | 247 | FLR symmetric alpha-beta TIM barrel; symmetric sup | 90.21 | |
| 3chv_A | 284 | Prokaryotic domain of unknown function (DUF849) W | 90.18 | |
| 1tqx_A | 227 | D-ribulose-5-phosphate 3-epimerase, putative; stru | 89.94 | |
| 1vs1_A | 276 | 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha | 89.89 | |
| 3hbl_A | 1150 | Pyruvate carboxylase; TIM barrel, ligase; HET: BTI | 89.77 | |
| 3igs_A | 232 | N-acetylmannosamine-6-phosphate 2-epimerase 2; ene | 89.69 | |
| 3q58_A | 229 | N-acetylmannosamine-6-phosphate 2-epimerase; TIM b | 89.52 | |
| 2p0o_A | 372 | Hypothetical protein DUF871; structural genomics, | 89.39 | |
| 3nvt_A | 385 | 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; | 89.34 | |
| 1vc4_A | 254 | Indole-3-glycerol phosphate synthase; lyase, trypt | 89.11 | |
| 1wa3_A | 205 | 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, | 88.9 | |
| 1xi3_A | 215 | Thiamine phosphate pyrophosphorylase; structural g | 87.48 | |
| 3kts_A | 192 | Glycerol uptake operon antiterminator regulatory; | 87.47 | |
| 4i6k_A | 294 | Amidohydrolase family protein; enzyme function ini | 87.27 | |
| 1mxs_A | 225 | KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate a | 87.26 | |
| 1geq_A | 248 | Tryptophan synthase alpha-subunit; hyperthermophIl | 87.18 | |
| 2bmb_A | 545 | Folic acid synthesis protein FOL1; folate biosynth | 87.18 | |
| 3zwt_A | 367 | Dihydroorotate dehydrogenase (quinone), mitochond; | 86.62 | |
| 1zco_A | 262 | 2-dehydro-3-deoxyphosphoheptonate aldolase; arabin | 86.6 | |
| 3khj_A | 361 | Inosine-5-monophosphate dehydrogenase; enzyme-inhi | 86.37 | |
| 3i65_A | 415 | Dihydroorotate dehydrogenase homolog, mitochondria | 86.34 | |
| 3lab_A | 217 | Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) | 86.18 | |
| 3b0p_A | 350 | TRNA-dihydrouridine synthase; TIM barrel, oxidored | 85.78 | |
| 1yxy_A | 234 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 84.59 | |
| 1vhc_A | 224 | Putative KHG/KDPG aldolase; structural genomics, u | 84.11 | |
| 1vr6_A | 350 | Phospho-2-dehydro-3-deoxyheptonate aldolase; TM034 | 83.91 | |
| 3ndo_A | 231 | Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid | 83.55 | |
| 2bdq_A | 224 | Copper homeostasis protein CUTC; alpha beta protei | 82.76 | |
| 1wbh_A | 214 | KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} | 82.52 | |
| 3mcm_A | 442 | 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine | 82.15 | |
| 3g8r_A | 350 | Probable spore coat polysaccharide biosynthesis P; | 81.99 | |
| 4gxw_A | 380 | Adenosine deaminase; amidohydrolase, COG1816, EFI, | 81.81 | |
| 3sz8_A | 285 | 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgci | 81.27 | |
| 3gk0_A | 278 | PNP synthase, pyridoxine 5'-phosphate synthase; de | 81.26 | |
| 1w0m_A | 226 | TIM, triosephosphate isomerase; glycolysis, glucon | 81.16 | |
| 3oa3_A | 288 | Aldolase; structural genomics, seattle structural | 80.49 | |
| 1yad_A | 221 | Regulatory protein TENI; TIM barrel, transcription | 80.09 |
| >4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-73 Score=648.92 Aligned_cols=422 Identities=23% Similarity=0.429 Sum_probs=373.0
Q ss_pred ccccccccCcccccccccCCCce-----eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccc-cCCCCc
Q psy8199 223 KLGLIHPKNNLKLKWRINLPDDI-----SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVM-LSNLTH 296 (965)
Q Consensus 223 ~l~f~~p~~~~~~~~~~~~p~~~-----~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~-~~~~~~ 296 (965)
.-++|||++++..... ..|+++ +||||.|||+|||+.+|+|++++||+||+|++|+++|++++.+++ ..+.++
T Consensus 32 ~~~~~h~~t~~~~~~~-~~P~vi~rg~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~l~~~~~~~~~~~ 110 (473)
T 4e3q_A 32 ETYSLYGFTDMPSLHQ-RGTVVVTHGEGPYIVDVNGRRYLDANSGLWNMVAGFDHKGLIDAAKAQYERFPGYHAFFGRMS 110 (473)
T ss_dssp HHHBCCSSCCHHHHHH-HCCEEEEEEETTEEEETTCCEEEETTTTTTTCTTCSCCHHHHHHHHHHHHHCCCCCCCTTEEE
T ss_pred hhhcCCCCCChhhhcc-CCCEEEEeeecCEEEeCCCCEEEEcccCHHHhhccCCCHHHHHHHHHHHHhcccccccccccC
Confidence 4467999998875421 356766 999999999999999999999999999999999999999986653 345678
Q ss_pred HHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchh
Q psy8199 297 KPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIY 376 (965)
Q Consensus 297 ~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~ 376 (965)
++..+|+++|++.+|.++++|+|++|||||||.|+|+||+|+..+|.+++.+||+++++|||.|.+++++++.+ ++..+
T Consensus 111 ~~~~~lAe~L~~~~p~~~~~v~f~~sGsEA~e~AiKlAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~tg~~-~~~~~ 189 (473)
T 4e3q_A 111 DQTVMLSEKLVEVSPFDSGRVFYTNSGSEANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHGVTAVSASMTGKP-YNSVF 189 (473)
T ss_dssp HHHHHHHHHHHHHSSCSSCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCG-GGGGG
T ss_pred HHHHHHHHHHHhhCCCCccEEEEeCchHHHHHHHHHHHHHHHHhcCCCCcceEEEeeceECCCccccccccccc-ccccc
Confidence 99999999999999988999999999999999999999999999999999999999999999999999999965 45666
Q ss_pred cccCCCeeEecCCCCCCC-CCCCChhHHHHHHHHHHHHHHHhC-CCcEEEEEEccccccCCCcccCChHHHHHHHHHHHh
Q psy8199 377 TSLLNKTYIITTPDSRNI-NKGNSANEIARCAIFDLEILLKKN-HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNN 454 (965)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~~~le~~l~~~-~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~ 454 (965)
.+..++..+++.|..++. ..+..++.+...+.+++++.+.+. ++++||||+|| |++++|+++|+++||++|+++|++
T Consensus 190 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAavi~EP-iqg~gG~~~p~~~fl~~lr~lc~~ 268 (473)
T 4e3q_A 190 GLPLPGFVHLTCPHYWRYGEEGETEEQFVARLARELEETIQREGADTIAGFFAEP-VMGAGGVIPPAKGYFQAILPILRK 268 (473)
T ss_dssp TCSCTTEEEECCCCHHHHSCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECS-SBSTTTSBCCCTTHHHHHHHHHHH
T ss_pred CCCCCcccccCCCcccccccccchhhHHHHHHHHHHHHHHHhhCCCceEEEEeCC-ccCCCCceeCCHHHHHHHHHHhcc
Confidence 777788888888876543 345566677778888888888654 56899999999 999999999999999999999999
Q ss_pred cCCeEEEeccccCCCcccccccccccCCCcceeeeccccCCCcccceeeeecHHHHHhhhcc-CCcccccccCCCCCCHH
Q psy8199 455 YNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYK-NNINIFLHSHSYSGNPL 533 (965)
Q Consensus 455 ~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~-~~~~~~~~~~t~~~~~~ 533 (965)
||++||+|||+|||||+|++|+++++|+.||++|+||+|+|||+|+|++++++++++.+... .....+.|++||+|||+
T Consensus 269 ~gilLI~DEV~tGfGRtG~~fa~e~~gv~PDi~t~~K~l~gG~~Pl~av~~~~~i~~~~~~~~~~~~~~~hg~T~~Gnpl 348 (473)
T 4e3q_A 269 YDIPVISDEVICGFGRTGNTWGCVTYDFTPDAIISSKNLTAGFFPMGAVILGPELSKRLETAIEAIEEFPHGFTASGHPV 348 (473)
T ss_dssp TTCCEEEECTTTSSSTTSSSCHHHHTTCCCSEEEECGGGGTTSSCCEEEEECHHHHHHHHHHHHHHSCCCCCCTTTTCHH
T ss_pred cceEEeccCccccCCcccchhHHHhcCCCCChHHhcccccCCCCCcccccccHHHHHHhccccccccccccCCCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999988642 12245789999999999
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcccCCCceeeeeceeEEEEEEEeecCccc------hhhHHHHHHHHH
Q psy8199 534 ACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQ------IETFSKKFFVAA 607 (965)
Q Consensus 534 ~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~------~~~~~~~~~~~l 607 (965)
+|++|+++|++++++++.+++++++++|+++|+++.++|.|.+|||.|+|+++++. .+..+ .......+.+.|
T Consensus 349 a~Aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~v~~vRG~Gl~~gielv-~~~~~~~~~~~~~~~~~~~~~~~ 427 (473)
T 4e3q_A 349 GCAIALKAIDVVMNEGLAENVRRLAPRFEERLKHIAERPNIGEYRGIGFMWALEAV-KDKASKTPFDGNLSVSERIANTC 427 (473)
T ss_dssp HHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEETTEEEEEEC-SBTTTTBCCCGGGCHHHHHHHHH
T ss_pred hhhhhhhhhhhhccccHHHHHHHHHHHHHHHHHHHhcCCCeeEEeecceEEEEEEe-cCccccccccccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999888999999999999999986 33221 123466788999
Q ss_pred HHcCcEEeecCCEEEEeCCcccCHHHHHHHHHhhhcccccH
Q psy8199 608 LKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNEL 648 (965)
Q Consensus 608 ~~~Gi~~~~~~~~lR~~p~~~~t~~~i~~~~~~l~~~~~~~ 648 (965)
+++|+++++.++.+||.||+++|+++++++++++.+++.++
T Consensus 428 ~~~Gll~~~~g~~i~l~PPL~it~~eid~~~~~l~~al~~v 468 (473)
T 4e3q_A 428 TDLGLICRPLGQSVVLCPPFILTEAQMDEMFDKLEKALDKV 468 (473)
T ss_dssp HHTTEECEEETTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHCCcEEEecCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998776543
|
| >4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-68 Score=603.11 Aligned_cols=389 Identities=24% Similarity=0.388 Sum_probs=337.0
Q ss_pred CCCce-----eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCC-CC
Q psy8199 241 LPDDI-----SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQY-KL 314 (965)
Q Consensus 241 ~p~~~-----~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~-~~ 314 (965)
.|+++ +||||.|||+|||+.+|+|++++||+||+|++|+++|++++.|......+++...+|+++|++.+|. ..
T Consensus 46 ~P~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~ 125 (456)
T 4atq_A 46 VPVYVEDADGGIIRDVDGNSFIDLGSGIAVTSVGASDPAVVAAVQEAAAHFTHTCFMVTPYEGYVAVTEQLNRLTPGDHA 125 (456)
T ss_dssp CSSCEEEEETTEEEETTSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHHHCSCCTTTTSCCHHHHHHHHHHHHHSSCSSC
T ss_pred CCCeEEeeecCEEEeCCCCEEEEccccHHHHhcCCCCHHHHHHHHHHHhhccCcccCccCcHHHHHHHHHHHHhCCCCCC
Confidence 56665 9999999999999999999999999999999999999999887766677899999999999999985 47
Q ss_pred CeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCc-CccchhcccCCCeeEecCCCCCC
Q psy8199 315 GHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQ-SFKEIYTSLLNKTYIITTPDSRN 393 (965)
Q Consensus 315 ~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 393 (965)
++|+|++|||||||.|||+||.+ ++|.+||+++++|||+|.+++++++.. .++..+.++.+++.++|.+....
T Consensus 126 ~~v~f~~sGsEA~e~AlklAr~~------t~r~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~p~~~~~~~~p~~~~~~ 199 (456)
T 4atq_A 126 KRTVLFNSGAEAVENAVKVARLA------TGRDAVVAFDHAYHGRTNLTMALTAKAMPYKTNFGPFAPEVYRMPMSYPFR 199 (456)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHH------HCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCGGG
T ss_pred cEEEEeCChHHHHHHHHHHHhhh------hcCCeEEEEecccCCccccccccccCccccccCCCCccccceecccccccc
Confidence 79999999999999999999998 589999999999999999999998865 46667788888899998876544
Q ss_pred CCC-CCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccc
Q psy8199 394 INK-GNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTG 472 (965)
Q Consensus 394 ~~~-~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G 472 (965)
... .....++....++.+++.+ .++++||||+|| |++++|.++|+++||++|+++|++||++||+|||||||||+|
T Consensus 200 ~~~~~~~~~~~~~~~~~~~e~~~--~~~~iAAvivEP-iqg~gG~~~p~~~fl~~lr~lc~~~gillI~DEV~tG~GRtG 276 (456)
T 4atq_A 200 EENPEITGAEAAKRAITMIEKQI--GGDQVAAIIIEP-IQGEGGFIVPAEGFLPALSEWAKEKGIVFIADEVQSGFCRTG 276 (456)
T ss_dssp CSSTTCCHHHHHHHHHHHHHHHT--CGGGEEEEEECS-SBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTS
T ss_pred cCCCcccHHHHHHHHHHHHHHhh--cCCceEEEEecc-ccCCCCccccchhhhHHHHHHHhhcCCceEecccccccCCcc
Confidence 332 1222233334444444433 256899999999 999999999999999999999999999999999999999999
Q ss_pred ccccccccCCCcceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHH
Q psy8199 473 KFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQ 552 (965)
Q Consensus 473 ~~~~~~~~~~~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~ 552 (965)
++|+++++|+.||++|+||+++|| +|+|++++++++++.+.. ..|++||+|||++|++|+++|++++++++.+
T Consensus 277 ~~~a~e~~gv~PDivt~gK~lggg-~P~~av~~~~~i~~~~~~------~~~~~Tf~gnpla~aaala~L~~i~~~~l~~ 349 (456)
T 4atq_A 277 EWFAVDHEGVVPDIITMAKGIAGG-LPLSAITGRADLLDAVHP------GGLGGTYGGNPVACAAALAAIDTMEQHDLNG 349 (456)
T ss_dssp SSSGGGGTTCCCSEEEECGGGGTT-SSCEEEEEEHHHHTTSCT------TSSCCSSSSCHHHHHHHHHHHHHHHHTTHHH
T ss_pred ccccccccCCCCchhhhhhcccCc-CCceeeEecHHHHhcccc------cCCCCCCCCChHHHHhhHHHHHHHhhccHHH
Confidence 999999999999999999999988 699999999999998864 4689999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcc-cC-----CCceeeeeceeEEEEEEEeecCc--cchhhHHHHHHHHHHHcCcEEeec---CCEE
Q psy8199 553 RISQDMKKITKALTSL-IT-----HPKIINFRQKGMIWAFDVIIEDP--EQIETFSKKFFVAALKNELLLRPI---GNTV 621 (965)
Q Consensus 553 ~~~~~~~~l~~~L~~l-~~-----~~~i~~v~g~G~~~~i~~~~~~~--~~~~~~~~~~~~~l~~~Gi~~~~~---~~~l 621 (965)
++++.+++|+++|+++ .+ ++.|.+|||.|+|+++++. .+. .+....+..+.+.|+++|+++.+. +++|
T Consensus 350 ~~~~~g~~l~~~L~~l~~~~~~~~~~~v~~VRG~Gl~~giel~-~~~~~~~~~~~~~~v~~~~~~~Gvl~~~~g~~~~~i 428 (456)
T 4atq_A 350 RARHIEELALGKLRELAAELSAGGGSVVGDIRGRGAMLAIELV-QPGSKEPNAELTKAVAAACLKEGVIILTCGTYGNVI 428 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC-----CEEEEEEETTEEEEEEB-CTTSCCBCHHHHHHHHHHHHHTTEECEEECTTSCEE
T ss_pred HHHHHHHHHHHHHHHHHHhcccccCCceEEeeecceEEEEEEe-cCCCCCcCHHHHHHHHHHHHHCCCEEEecCCCCCEE
Confidence 9999999999999987 33 3668999999999999997 222 223445667899999999998764 4799
Q ss_pred EEeCCcccCHHHHHHHHHhhhcccc
Q psy8199 622 YLMPPYILNKNEIQHMTSAIFQTFN 646 (965)
Q Consensus 622 R~~p~~~~t~~~i~~~~~~l~~~~~ 646 (965)
||.||+++++++++++++++.+++.
T Consensus 429 rl~PpL~it~~~id~~l~~l~~al~ 453 (456)
T 4atq_A 429 RLLPPLVISDELLIDGLEVLAAAIK 453 (456)
T ss_dssp EECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999877653
|
| >3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-61 Score=562.35 Aligned_cols=423 Identities=25% Similarity=0.421 Sum_probs=369.8
Q ss_pred cccccccCcccccccccCCCce-----eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHH
Q psy8199 224 LGLIHPKNNLKLKWRINLPDDI-----SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKP 298 (965)
Q Consensus 224 l~f~~p~~~~~~~~~~~~p~~~-----~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~ 298 (965)
-.+|||++++.... -..|+++ +|+||.||++||||.+|+|+++|||+||+|++|+++|++++.+++...++++.
T Consensus 20 ~~~~~~~~~~~~~~-~~~p~~~~~~~G~~~~d~~G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~ 98 (476)
T 3i5t_A 20 DHILLPAQEMAKLG-KSAQPVLTHAEGIYVHTEDGRRLIDGPAGMWCAQVGYGRREIVDAMAHQAMVLPYASPWYMATSP 98 (476)
T ss_dssp HHBCCTTEEGGGTT-TCCCCBEEEEEBTEEEETTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCCCCCTTTCBCHH
T ss_pred cccccCcccccccc-cCCCeeEEEeecCEEEECCCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhccCcccCccCCHH
Confidence 46799988765432 1246655 99999999999999999999999999999999999999987665434688999
Q ss_pred HHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcc
Q psy8199 299 VIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTS 378 (965)
Q Consensus 299 ~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~ 378 (965)
..+|+++|++.+|.+.++|+|++||+|||+.|++++++++..+|.+++++||+++++|||++.+++++++.+.++..+.+
T Consensus 99 ~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Aik~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~ 178 (476)
T 3i5t_A 99 AARLAEKIATLTPGDLNRIFFTTGGSTAVDSALRFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAACTGRTGNWPNFDI 178 (476)
T ss_dssp HHHHHHHHHTTSSTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHTCCCGGGCTTSCC
T ss_pred HHHHHHHHHhcCCCCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCcCcCChhhccccCChhhccccCC
Confidence 99999999999987889999999999999999999999999999999999999999999999999999998888888888
Q ss_pred cCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCC-CcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCC
Q psy8199 379 LLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNH-NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNI 457 (965)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~-~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~ 457 (965)
..+++.+++.|..++. .+.+.+.+...++++|++++++.. +++++|++|| +++++|.++++++||++|+++|++||+
T Consensus 179 ~~~~~~~~~~p~~~~~-~~~~~~~~~~~~~~~le~~i~~~~~~~~aavi~ep-~~~~~G~~~~~~~~L~~l~~lc~~~gi 256 (476)
T 3i5t_A 179 AQDRISFLSSPNPRHA-GNRSQEAFLDDLVQEFEDRIESLGPDTIAAFLAEP-ILASGGVIIPPAGYHARFKAICEKHDI 256 (476)
T ss_dssp CCTTEEEECCCCGGGC-TTSCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECS-SBTTTTSBCCCTTHHHHHHHHHHHTTC
T ss_pred CCCCcEEeCCCccccc-CCCchHHHHHHHHHHHHHHHHhcCCCCEEEEEECC-ccCCCCcccCCHHHHHHHHHHHHHcCC
Confidence 8888889988865554 445566777778999999997543 6799999999 999999999999999999999999999
Q ss_pred eEEEeccccCCCccccccccc-ccCCCcceeeeccccCCCcccceeeeecHHHHHhhhcc-CCcccccccCCCCCCHHHH
Q psy8199 458 HLIADEIAVGCGRTGKFFACE-HAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYK-NNINIFLHSHSYSGNPLAC 535 (965)
Q Consensus 458 llI~DEv~tg~gr~G~~~~~~-~~~~~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~-~~~~~~~~~~t~~~~~~~~ 535 (965)
+||+||||+||||+|++|+++ ++++.||++||||+++|||+|+|++++++++++.+... ...+.+.|++||++||++|
T Consensus 257 llI~DEv~~g~gr~G~~~~~~~~~~v~pdi~t~sK~l~~G~~plg~v~~~~~i~~~~~~~~~~~~~~~~~~t~~~np~a~ 336 (476)
T 3i5t_A 257 LYISDEVVTGFGRCGEWFASEKVFGVVPDIITFAKGVTSGYVPLGGLAISEAVLARISGENAKGSWFTNGYTYSNQPVAC 336 (476)
T ss_dssp EEEEECTTTTTTTTSSSCHHHHTTCCCCSEEEECGGGGTTSSCCEEEEECHHHHHTTSGGGCTTCEECCCCTTTTCHHHH
T ss_pred EEEEEecccCCccccCceeeecccCCCcchhhhhhhhcCCCcCeEEEEECHHHHHHHhcCCcccccccccCCCCcCHHHH
Confidence 999999999999999988998 99999999999999999988999999999999988652 1124467899999999999
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcccCCCceeeeeceeEEEEEEEeecCccchh------hHHHHHHHHHHH
Q psy8199 536 CAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIE------TFSKKFFVAALK 609 (965)
Q Consensus 536 aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~------~~~~~~~~~l~~ 609 (965)
+|++++|+.++++++.++++++++++++.|+++.++|.+..+++.|+|+++++. .+..+.. .....+.+.|++
T Consensus 337 aAa~aaL~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~v~~v~~~G~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~l~~ 415 (476)
T 3i5t_A 337 AAALANIELMEREGIVDQAREMADYFAAALASLRDLPGVAETRSVGLVGCVQCL-LDPTRADGTAEDKAFTLKIDERCFE 415 (476)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHTTTTSTTEEEEEEETTEEEEEEC-CC-----CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCceeEEEEe-cCccccccccchhHHHHHHHHHHHH
Confidence 999999999988889999999999999999988778889999999999999986 2211111 135568889999
Q ss_pred cCcEEeecCCEEEEeCCcccCHHHHHHHHHhhhcccccHHH
Q psy8199 610 NELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNELDE 650 (965)
Q Consensus 610 ~Gi~~~~~~~~lR~~p~~~~t~~~i~~~~~~l~~~~~~~~e 650 (965)
+||+++|.++++||+||+++++++++++++++.+++.+..+
T Consensus 416 ~Gv~v~~~g~~iRi~p~l~~t~e~i~~~l~~l~~~l~~~~~ 456 (476)
T 3i5t_A 416 LGLIVRPLGDLCVISPPLIISRAQIDEMVAIMRQAITEVSA 456 (476)
T ss_dssp TTEECEEETTEEEECCCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEecCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999998899999999999999999999999887655443
|
| >4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-62 Score=554.98 Aligned_cols=384 Identities=17% Similarity=0.229 Sum_probs=324.8
Q ss_pred cccccccccccccccCcccccccccCCCce-----eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccc
Q psy8199 216 RQALHAYKLGLIHPKNNLKLKWRINLPDDI-----SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVM 290 (965)
Q Consensus 216 ~~~Lha~~l~f~~p~~~~~~~~~~~~p~~~-----~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~ 290 (965)
..+.+..+-+..+|..... +.|+++ +||||+|||+|||+.+|+|+++|||+||+|++|+++|++++.++
T Consensus 49 ~~a~~~~pgg~~~~~~~~~-----~~P~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGH~hp~v~~Av~~q~~~~~~~- 122 (454)
T 4ao9_A 49 EAQARYMPGANSRSVLFYA-----PFPLTIARGEGAALWDADGHRYADFIAEYTAGVYGHSAPEIRDAVIEAMQGGINL- 122 (454)
T ss_dssp HHHTTTSGGGCSSGGGCCS-----SCCCEEEEEETTEEEETTCCEEEESSGGGGTTTTCSCCHHHHHHHHHHHHTCSCC-
T ss_pred HHHhhhCCCCCCCCccccC-----CCCccEEEeecCEEEECCCCEEEEccccHHhhcccCCCHHHHHHHHHHHhcCCCc-
Confidence 3355555556666654322 246666 99999999999999999999999999999999999999886443
Q ss_pred cCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCc
Q psy8199 291 LSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQ 370 (965)
Q Consensus 291 ~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~ 370 (965)
+.++....+|+++|++.+| +.++|+|+|||||||+.|||+||.| ++|++||+|+++|||++.++++.++..
T Consensus 123 --~~~~~~~~~lae~l~~~~p-~~~~v~f~~SGsEA~e~AiklAr~~------tgr~~ii~~~~~yHG~t~~~~~~~~~~ 193 (454)
T 4ao9_A 123 --TGHNLLEGRLARLICERFP-QIEQLRFTNSGTEANLMALTAALHF------TGRRKIVVFSGGYHGGVLGFGARPSPT 193 (454)
T ss_dssp --CSEESSHHHHHHHHHHHST-TCSEEEEESSHHHHHHHHHHHHHHH------HTCCEEEEETTCBCSTTCBBSSSBCTT
T ss_pred --cCCcHHHHHHHHHHHHhCC-CCCEEEEeCchHHHHHHHHHHHHhc------ccCCeEEEEeCCcCCccccccccccCc
Confidence 3456778899999999998 7899999999999999999999999 489999999999999998887766533
Q ss_pred CccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHH
Q psy8199 371 SFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVRE 450 (965)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~ 450 (965)
.+ ..+...+|+ +|++++++.+++++++++|||+|| +++++|.++|+++||++|++
T Consensus 194 ~~-------~~~~~~~p~-----------------nd~~~l~~~l~~~~~~iAavIvEP-v~g~~G~~~p~~~fL~~lr~ 248 (454)
T 4ao9_A 194 TV-------PFDFLVLPY-----------------NDAQTARAQIERHGPEIAVVLVEP-MQGASGCIPGQPDFLQALRE 248 (454)
T ss_dssp SC-------CSEEEEECT-----------------TCHHHHHHHHHHTGGGEEEEEECS-EESTTTCEECCHHHHHHHHH
T ss_pred cC-------CCCcccCCC-----------------chHHHHHHHHhhcCCceEEEEecc-ccCCCCccCCchhhHHHHHH
Confidence 21 112333333 688999999998888899999999 99999999999999999999
Q ss_pred HHHhcCCeEEEeccccCCCcccccccccccCCCcceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCC
Q psy8199 451 ICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSG 530 (965)
Q Consensus 451 l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~ 530 (965)
+|++||++||+|||+| ||+|.+|+++++|+.||++|+||+++|| +|+|++++++++++.+.. ...++.|++||++
T Consensus 249 lc~~~g~lLI~DEV~t--GR~G~~~a~e~~gv~PDi~t~gK~lggG-~Piga~~~~~ei~~~~~~--~~~~~~h~~T~~g 323 (454)
T 4ao9_A 249 SATQVGALLVFDEVMT--SRLAPHGLANKLGIRSDLTTLGKYIGGG-MSFGAFGGRADVMALFDP--RTGPLAHSGTFNN 323 (454)
T ss_dssp HHHHHTCEEEEECTTG--GGGSTTCHHHHHTCCCSEEEEEGGGGTT-SSCEEEEECHHHHGGGCT--TTCSCCCCCTTTT
T ss_pred HHhhcCCEEEEECCCc--CCCccccchhccCCCCcEEEeccccCCC-CcceeeeeHHHHHHHHhh--ccCCccccCCCCC
Confidence 9999999999999999 5999999999999999999999999999 699999999999998865 3456789999999
Q ss_pred CHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcc-cCCCceeeeeceeEEEEEEEeecCccc-------hhhHHHH
Q psy8199 531 NPLACCAALATLEIFNKDNILQRISQDMKKITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDPEQ-------IETFSKK 602 (965)
Q Consensus 531 ~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l-~~~~~i~~v~g~G~~~~i~~~~~~~~~-------~~~~~~~ 602 (965)
||++|+|++++|++++++++++++++++++|+++|+++ .+++.+..|+|.|+|+++++...+... .......
T Consensus 324 nPla~AAala~L~~l~~~~~~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~G~m~gi~f~~~~~~~~~~~~~~d~~~~~~ 403 (454)
T 4ao9_A 324 NVMTMAAGYAGLTKLFTPEAAGALAERGEALRARLNALCANEGVAMQFTGIGSLMNAHFVQGDVRSSEDLAAVDGRLRQL 403 (454)
T ss_dssp CHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTBSCEEEEETTEEEEESCCSCCCSGGGGTTCCHHHHHH
T ss_pred CHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHhhCCCCEEEeeeceEEEEEEecCCCCCHHHHHhhhHHHHHH
Confidence 99999999999999999999999999999999999998 667777899999999999986222111 1223456
Q ss_pred HHHHHHHcCcEEeecCCEEEEeCCcccCHHHHHHHHHhhhccccc
Q psy8199 603 FFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNE 647 (965)
Q Consensus 603 ~~~~l~~~Gi~~~~~~~~lR~~p~~~~t~~~i~~~~~~l~~~~~~ 647 (965)
+...|+++||++.|.+. +.+++.+|+++||++++++.+++..
T Consensus 404 ~~~~ll~~Gv~~~p~~~---~~~s~~~T~~dId~~l~al~~~l~~ 445 (454)
T 4ao9_A 404 LFFHLLNEDIYSSPRGF---VVLSLPLTDADIDRYVAAIGSFIGG 445 (454)
T ss_dssp HHHHHHHTTEECCTTCE---EECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCEEEcCCCC---EEEeCCCCHHHHHHHHHHHHHHHHh
Confidence 77889999999988753 4466779999999999998876543
|
| >3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-61 Score=562.70 Aligned_cols=419 Identities=27% Similarity=0.448 Sum_probs=363.5
Q ss_pred ccccccccCcccccccccCCCce-----eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhcc-ccccCCCCc
Q psy8199 223 KLGLIHPKNNLKLKWRINLPDDI-----SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLE-HVMLSNLTH 296 (965)
Q Consensus 223 ~l~f~~p~~~~~~~~~~~~p~~~-----~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~-~~~~~~~~~ 296 (965)
+-.+|||++.+..... ..|+++ +||||.|||+||||.+|+|+++|||+||+|++|+.+|++++. +++...+++
T Consensus 20 ~~~~~~~~~~~~~~~~-~~p~~~~~~~G~~l~d~~G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~ 98 (472)
T 3hmu_A 20 AAHHLHPFSANNALGE-EGTRVITRARGVWLNDSEGEEILDAMAGLWCVNIGYGRDELAEVAARQMRELPYYNTFFKTTH 98 (472)
T ss_dssp HHHEECTTEEHHHHHH-HCCEEEEEEEBTEEEETTCCEEECTTHHHHTCTTCBCCHHHHHHHHHHHHHCSCCCSSSSEEC
T ss_pred HhhccCCccccccccc-CCCeeEEEeecCEEEECCCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhccccccccccCC
Confidence 4467888876543210 245555 999999999999999999999999999999999999999875 344456789
Q ss_pred HHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchh
Q psy8199 297 KPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIY 376 (965)
Q Consensus 297 ~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~ 376 (965)
+...+|+++|++.+|.+.++|+|++||+|||+.|+|++++|+..+|.+++++||+++++|||++.+++++++.+.++..+
T Consensus 99 ~~~~~lae~l~~~~~~~~~~v~~~~sGseA~~~aik~a~~~~~~~g~~~~~~ii~~~~~yHg~t~~~~~~~~~~~~~~~~ 178 (472)
T 3hmu_A 99 VPAIALAQKLAELAPGDLNHVFFAGGGSEANDTNIRMVRTYWQNKGQPEKTVIISRKNAYHGSTVASSALGGMAGMHAQS 178 (472)
T ss_dssp HHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCcCCCccHHhhhccCChhhcccc
Confidence 99999999999999877889999999999999999999999999999999999999999999999999999987777777
Q ss_pred cccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhC-CCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhc
Q psy8199 377 TSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKN-HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNY 455 (965)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~-~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~ 455 (965)
. ..+++.++|.|..++.....+.+.+...++++|++++++. ++++++|++|| +++++|.++|+++||++|+++|++|
T Consensus 179 ~-~~~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~aavi~ep-v~~~gG~~~~~~~~l~~l~~l~~~~ 256 (472)
T 3hmu_A 179 G-LIPDVHHINQPNWWAEGGDMDPEEFGLARARELEEAILELGENRVAAFIAEP-VQGAGGVIVAPDSYWPEIQRICDKY 256 (472)
T ss_dssp C-CCSSEEEECCCCHHHHCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECS-SBSTTTCBCCCTTHHHHHHHHHHHT
T ss_pred C-CCCCcEEeCCCccccCCcccCHHHHHHHHHHHHHHHHHhcCCCCEEEEEEcC-ccCCCCcccCCHHHHHHHHHHHHHc
Confidence 7 7778888887753331111455667777899999999754 36799999999 9999999999999999999999999
Q ss_pred CCeEEEeccccCCCcccccccccccCCCcceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHH
Q psy8199 456 NIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLAC 535 (965)
Q Consensus 456 g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~ 535 (965)
|++||+||||+||||+|++|+++++++.||++||||+|+||++|+|++++++++++.+.. ..+.|++||++||++|
T Consensus 257 gillI~DEv~~gfgr~G~~~a~~~~~v~pdi~t~sK~l~gg~~plG~v~~~~~i~~~~~~----~~~~~~~t~~~np~a~ 332 (472)
T 3hmu_A 257 DILLIADEVICGFGRTGNWFGTQTMGIRPHIMTIAKGLSSGYAPIGGSIVCDEVAHVIGK----DEFNHGYTYSGHPVAA 332 (472)
T ss_dssp TCEEEEECTTTTTTTTSSSCHHHHHTCCCSEEEECGGGTTTSSCCEEEEEEHHHHHHHTT----SCBCCCCTTTTCHHHH
T ss_pred CCEEEEEccccCCcccCccchhHHhCCCCceeeechhhhcCCcceEEEEECHHHHHhccc----CCccccCCCCCCHHHH
Confidence 999999999999999999999999999999999999999998999999999999998832 3467899999999999
Q ss_pred HHHHHHHHHHhcccHHHHHH-HHHHHHHHHHHcccCCCceeeeeceeEEEEEEEeecCccch-------hhHHHHHHHHH
Q psy8199 536 CAALATLEIFNKDNILQRIS-QDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQI-------ETFSKKFFVAA 607 (965)
Q Consensus 536 aaa~a~L~~~~~~~~~~~~~-~~~~~l~~~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~-------~~~~~~~~~~l 607 (965)
+|++++|+.++++++.++++ ++++++++.|+++.++|.+..+++.|+|+++++. .+..+. ...+..+.+.|
T Consensus 333 aAa~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~v~~vr~~G~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~l 411 (472)
T 3hmu_A 333 AVALENLRILEEENILDHVRNVAAPYLKEKWEALTDHPLVGEAKIVGMMASIALT-PNKASRAKFASEPGTIGYICRERC 411 (472)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHTHHHHHHHHHHGGGGSTTEEEEEEETTEEEEEEC-SCGGGTCCBSSCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCceEEEEEe-cCccccccccchhHHHHHHHHHHH
Confidence 99999999998888999999 9999999999988778889999999999999986 222111 22355788899
Q ss_pred HHcCcEEeecCCEEEEeCCcccCHHHHHHHHHhhhcccccHH
Q psy8199 608 LKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNELD 649 (965)
Q Consensus 608 ~~~Gi~~~~~~~~lR~~p~~~~t~~~i~~~~~~l~~~~~~~~ 649 (965)
+++||++++.++++||+||+++++++++++++++.+++.+..
T Consensus 412 ~~~Gv~v~~~g~~iRi~p~~~~t~e~i~~~l~~l~~~l~~~~ 453 (472)
T 3hmu_A 412 FANNLIMRHVGDRMIISPPLVITPAEIDEMFVRIRKSLDEAQ 453 (472)
T ss_dssp HHTTBCCEEETTEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCcEEEecCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999889999999999999999999999987765543
|
| >4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-62 Score=592.89 Aligned_cols=422 Identities=24% Similarity=0.433 Sum_probs=342.7
Q ss_pred ccccccccCcccccccccCCCce-------eEEEecCCc----ccccccccchhccCCCC-CHHHHHHHHHHHhhccccc
Q psy8199 223 KLGLIHPKNNLKLKWRINLPDDI-------SKLITFSGK----RYLDAISSWWVNLFGHS-NSYINKALKNQLNKLEHVM 290 (965)
Q Consensus 223 ~l~f~~p~~~~~~~~~~~~p~~~-------~~~~d~dG~----~ylD~~~~~~~~~lGh~-~p~v~~av~~~~~~~~~~~ 290 (965)
.-++|||++++..+.. ..|+++ +||||.||| +|||++||+|++++||+ ||+|++|+++|++++.|++
T Consensus 339 ~~~~whp~t~~~~~~~-~~p~~i~~a~G~g~~l~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~i~~Ai~~Q~~~l~h~~ 417 (831)
T 4a0g_A 339 GEVFWWPFTQHKLVHQ-ETVTVIDSRCGENFSIYKASDNSSLSQQFDACASWWTQGPDPTFQAELAREMGYTAARFGHVM 417 (831)
T ss_dssp HHHBCCTTCCGGGCCG-GGCEEEEEEETTEEEEEEHHHHSEEEEEEETTHHHHTCCCCHHHHHHHHHHHHHHHHHHSSCC
T ss_pred hhhccCCccCcccccC-CCCeEEEEeeccceEEEECCCCccchheeeecccHhhcCCCCCCCHHHHHHHHHHHhhccccc
Confidence 4578999998875320 135555 599999999 99999999999999999 9999999999999988876
Q ss_pred cCCCCcHHHHHHHHHHHhhcCCC-CCeEEEcCChhHHHHHHHHHH-HHHHHhcCCC--------CceEEEEEcCCccCCc
Q psy8199 291 LSNLTHKPVIKLSEKLSSLTQYK-LGHCFYGSDGASAVEVALKMS-FHYWYNKGFL--------NKKKFICLQNSYHGET 360 (965)
Q Consensus 291 ~~~~~~~~~~~la~~l~~~~~~~-~~~v~~~~sGseA~~~Al~~a-~~~~~~~g~~--------~~~~vi~~~~~yHg~~ 360 (965)
+.++++++..+|+++|++.+|.+ +++|+|++|||||||.|||+| +.|+..+|.+ +|.+||+++++|||.|
T Consensus 418 ~~~~~~~~~~~Lae~L~~~~p~~~l~~vff~~SGSeA~E~AlK~A~r~~~~~~g~~~~~~~~~~~r~~iI~~~~syHG~T 497 (831)
T 4a0g_A 418 FPENVYEPALKCAELLLDGVGKGWASRVYFSDNGSTAIEIALKMAFRKFCVDHNFCEATEEEKHIVVKVIALRGSYHGDT 497 (831)
T ss_dssp CTTEECHHHHHHHHHHHHTTTTTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTTC---------CCEEEEEETTCCCCSS
T ss_pred ccccCCHHHHHHHHHHHHhCCCCCCCEEEECCChhHHHHHHHHHHHHHHHhhcCCCccccccccCccEEEEecCCcccCc
Confidence 66788999999999999999865 789999999999999999999 6788777753 5889999999999999
Q ss_pred cccccccCCcCccch--------hcccC--------CCeeEecCCCCCCCCCC---------------CChhHHHHHHHH
Q psy8199 361 LGALAVTNIQSFKEI--------YTSLL--------NKTYIITTPDSRNINKG---------------NSANEIARCAIF 409 (965)
Q Consensus 361 ~~~~~~~~~~~~~~~--------~~~~~--------~~~~~~~~~~~~~~~~~---------------~~~~~~~~~d~~ 409 (965)
++++++++...++.. +.++. +++.+++.|+.+..... .....+...+++
T Consensus 498 ~gals~tg~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 577 (831)
T 4a0g_A 498 LGAMEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWNISLPESFSEIAPEYGTFTSRDEIFDKSRDASTLARIYSA 577 (831)
T ss_dssp HHHHHTSCCCGGGSTTTCTTCCCCEEEECCCEEEEETTEEEEECCTTSCCCCSSTTEESCHHHHHCGGGGGSHHHHHHHH
T ss_pred eeeeeccCccccccccccccccCCccccCCccccccCCceEecCCccccccccccccccchhhhhcccccchhhhHHHHH
Confidence 999999986655431 11111 23445566644332110 011123445678
Q ss_pred HHHHHHHh-----CCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCc
Q psy8199 410 DLEILLKK-----NHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWP 484 (965)
Q Consensus 410 ~le~~l~~-----~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~p 484 (965)
+|++.|++ .++++++||+||++++++|++++|++||++|+++|++||++||+|||||||||+|++|+++++|+.|
T Consensus 578 ~le~~l~~~~~~~~~~~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~gv~P 657 (831)
T 4a0g_A 578 YLSKHLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELLGCKP 657 (831)
T ss_dssp HHHHHC---------CEEEEEEECCSEETTTTSEEECHHHHHHHHHHHHHTTCCEEEECTTTTTTTTSBSSTHHHHSSCC
T ss_pred HHHHHHHhhhhhcCCCcEEEEEEecccccCCCCccCCHHHHHHHHHHHHHcCCeEEEEcCccccccCCCchhhHhcCCCC
Confidence 88888863 3578999999993399999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-
Q psy8199 485 DFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITK- 563 (965)
Q Consensus 485 Divt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~- 563 (965)
|++||||+|||||+|+|++++++++++.+..+.....+.|++||++||++|++|+++|++++++++.++++++++++++
T Consensus 658 DiitlsK~L~gG~~Plgav~~~~~i~~~~~~~~~~~~~~hg~T~~g~Pla~Aaala~L~~i~~~~l~~~~~~~~~~l~~~ 737 (831)
T 4a0g_A 658 DIACFAKLLTGGMVPLAVTLATDAVFDSFSGDSKLKALLHGHSYSAHAMGCATAAKAIQWFKDPETNHNITSQGKTLREL 737 (831)
T ss_dssp SEEEECGGGGTTSSCCEEEEECHHHHHTTCSSCGGGSCCCCCTTTTCHHHHHHHHHHHHHHHCTTTCTTBCTTSSBBCCC
T ss_pred cEEEEecccccCccCcEEEEECHHHHHHHhcccccccceeecCCcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 9999999999998999999999999999876333345789999999999999999999999888888888776666542
Q ss_pred ---HH-HcccCCCceeeeeceeEEEEEEEeecCccc---hhhHHHHHHHHHHHcCcEEeecCCEEEEeCCcccCHHHHHH
Q psy8199 564 ---AL-TSLITHPKIINFRQKGMIWAFDVIIEDPEQ---IETFSKKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQH 636 (965)
Q Consensus 564 ---~L-~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~---~~~~~~~~~~~l~~~Gi~~~~~~~~lR~~p~~~~t~~~i~~ 636 (965)
.+ +.+.++|.+..+++.|+|+++++. .+... ....+..+.+.|+++||+++|.++.+||+||+.+++++|++
T Consensus 738 l~~~l~~~l~~~~~v~~vrg~Gl~~~iel~-~~~~~~~~~~~~a~~~~~~l~e~Gv~v~p~g~~lrl~pp~~~t~e~id~ 816 (831)
T 4a0g_A 738 WDEELVQQISSHSAVQRVVVIGTLFALELK-ADASNSGYASLYAKSLLIMLREDGIFTRPLGNVIYLMCGPCTSPEICRR 816 (831)
T ss_dssp SCHHHHHHHHHSTTEEEEEEETTEEEEEEC----------CHHHHHHHHHHHHTTEECCCBTTEEEEECCTTCCHHHHHH
T ss_pred HHHHHHHHHhhCCCceeEeecccEEEEEEe-cCccccccchHHHHHHHHHHHHCCcEEEecCCEEEEECCCCCCHHHHHH
Confidence 23 334567889999999999999996 22110 11235578889999999999999999999999999999999
Q ss_pred HHHhhhcccc
Q psy8199 637 MTSAIFQTFN 646 (965)
Q Consensus 637 ~~~~l~~~~~ 646 (965)
+++++.+++.
T Consensus 817 ~~~~l~~~l~ 826 (831)
T 4a0g_A 817 LLTKLYKRLG 826 (831)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 9999876543
|
| >3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-59 Score=537.04 Aligned_cols=404 Identities=32% Similarity=0.570 Sum_probs=348.8
Q ss_pred ccccccccCcc-cccccccCCCce-----eEEEec-CCc--ccccccccchhccCCCCCHHHHHHHHHHHhhccccccCC
Q psy8199 223 KLGLIHPKNNL-KLKWRINLPDDI-----SKLITF-SGK--RYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSN 293 (965)
Q Consensus 223 ~l~f~~p~~~~-~~~~~~~~p~~~-----~~~~d~-dG~--~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~ 293 (965)
.-.+|||++.. ... ..|+++ +|+||. ||| +||||.+|+|+++|||+||+|++|+.+|++++.+++...
T Consensus 38 ~~~~~~~~~~~~~~~---~~~~~~~~~~G~~l~d~~dG~~~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~ 114 (457)
T 3tfu_A 38 GAHLWHPYSSIGREA---VSPVVAVAAHGAWLTLIRDGQPIEVLDAMSSWWTAIHGHGHPALDQALTTQLRVMNHVMFGG 114 (457)
T ss_dssp HHHBCCTTCCSSCCS---SCCEEEEEEEBTEEEEEETTEEEEEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCSCCCSSS
T ss_pred HhhcCcccccccccC---CCCceEEeeecCEEEEccCCCeeEEEECCCcHhhhccCCCCHHHHHHHHHHHHhccCccccc
Confidence 44678888765 222 245555 999999 999 999999999999999999999999999999887665556
Q ss_pred CCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccC-CcCc
Q psy8199 294 LTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTN-IQSF 372 (965)
Q Consensus 294 ~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~-~~~~ 372 (965)
++++...+|+++|++.+|.+.++|+|++||+||++.|+++++++++.+|.+++++||+++++|||++.+++++++ ...+
T Consensus 115 ~~~~~~~~L~e~la~~~~~~~~~v~~~~sGseA~~~Alk~a~~~~~~~g~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~ 194 (457)
T 3tfu_A 115 LTHEPAARLAKLLVDITPAGLDTVFFSDSGSVSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGM 194 (457)
T ss_dssp EECHHHHHHHHHHHHHSSTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHTTSCCC---
T ss_pred cCCHHHHHHHHHHHHhCCCCcCEEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCceEEEEcCCcCCccHHhhcccCCcccc
Confidence 789999999999999998778899999999999999999999999999988999999999999999999999965 5567
Q ss_pred cchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHH
Q psy8199 373 KEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREIC 452 (965)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~ 452 (965)
+..+.++..+..++|.|.... ..+|+++|+++++++++++++|++||+++|++|.++++++|+++|+++|
T Consensus 195 ~~~~~~~~~~~~~~~~p~~~~----------~~~d~~~le~~l~~~~~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~ 264 (457)
T 3tfu_A 195 HSLWTDVLAAQVFAPQVPRDY----------DPAYSAAFEAQLAQHAGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDIC 264 (457)
T ss_dssp -------CCCCEEECCCCSSC----------CHHHHHHHHHHHHHHGGGEEEEEECSSEECTTTCEECCTHHHHHHHHHH
T ss_pred cccccCCCCCceEecCCCccc----------CHHHHHHHHHHHHhCCCCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHH
Confidence 777777778888888775332 2379999999998655689999999977999999999999999999999
Q ss_pred HhcCCeEEEeccccCCCcccccccccccCCCcceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCH
Q psy8199 453 NNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNP 532 (965)
Q Consensus 453 ~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~ 532 (965)
++||++||+||||+||||+|.+++++++++.||++||||+|+||++|+|++++++++++.+... ..+.+.|++||++||
T Consensus 265 ~~~gillI~DEv~~g~gr~G~~~a~~~~~~~pdiit~sK~l~gG~~~lG~v~~~~~i~~~~~~~-~~~~~~~~~t~~~n~ 343 (457)
T 3tfu_A 265 RRYEVLLIFDEIATGFGRTGALFAADHAGVSPDIMCVGKALTGGYLSLAATLCTADVAHTISAG-AAGALMHGPTFMANP 343 (457)
T ss_dssp HHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECGGGGTTSSCCEEEEEEHHHHHHHHHS-SSCSCCCCCTTTTCH
T ss_pred HHcCCEEEEEcCccCCccccchhHhHhcCCCceEEEEChhhhCCCcceEEEEEcHHHHHHhhcc-CCCceeEecCCCcCH
Confidence 9999999999999999999999999999999999999999999988999999999999988631 123467899999999
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCc
Q psy8199 533 LACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNEL 612 (965)
Q Consensus 533 ~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi 612 (965)
++|++++++|+.++++++.+++++++++++++|+++.+++.+..+++.|+|+++++. .+ . .+..+.+.|+++||
T Consensus 344 ~a~aaa~aaL~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~v~~vr~~G~~~~i~l~-~~-~----~~~~~~~~l~~~Gv 417 (457)
T 3tfu_A 344 LACAVSVASVELLLGQDWRTRITELAAGLTAGLDTARALPAVTDVRVCGAIGVIECD-RP-V----DLAVATPAALDRGV 417 (457)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHGGGGGSTTEEEEEECSSCEEEEES-SC-C----CHHHHHHHHHHTTE
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcCCCeeeeecCCeEEEEEEC-Cc-c----cHHHHHHHHHHCCe
Confidence 999999999999988889999999999999999998778888999999999999886 21 1 14568889999999
Q ss_pred EEeecCCEEEEeCCcccCHHHHHHHHHhhhcccc
Q psy8199 613 LLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFN 646 (965)
Q Consensus 613 ~~~~~~~~lR~~p~~~~t~~~i~~~~~~l~~~~~ 646 (965)
+++|.++++||+||+++++++++++++++.+++.
T Consensus 418 ~v~~~~~~lRi~p~~~~t~eei~~~l~~L~~~l~ 451 (457)
T 3tfu_A 418 WLRPFRNLVYAMPPYICTPAEITQITSAMVEVAR 451 (457)
T ss_dssp ECCCBTTEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred EEEecCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999876543
|
| >4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-58 Score=534.12 Aligned_cols=421 Identities=24% Similarity=0.416 Sum_probs=350.5
Q ss_pred cccccccccCcccccccccCCCce-----eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhcc-ccccCCCC
Q psy8199 222 YKLGLIHPKNNLKLKWRINLPDDI-----SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLE-HVMLSNLT 295 (965)
Q Consensus 222 ~~l~f~~p~~~~~~~~~~~~p~~~-----~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~-~~~~~~~~ 295 (965)
..-.+|||++....... ..|+++ +||||.||++||||.+++|+++|||+||+|++|+.+|++++. +++...++
T Consensus 14 ~~~~~~~~~~~~~~~~~-~~p~~~~~~~G~~~~d~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~~~~ 92 (459)
T 4a6r_A 14 DAAHHLHPFTDTASLNQ-AGARVMTRGEGVYLWDSEGNKIIDGMAGLWCVNVGYGRKDFAEAARRQMEELPFYNTFFKTT 92 (459)
T ss_dssp ---------------------CCEEEEEBTEEEETTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCSCCCTTSSSC
T ss_pred hhhhccCCccccccccc-cCCeeEEEeecCEEEECCCCEEEECCCchhcccCCCCCHHHHHHHHHHHHhccccccccccC
Confidence 34567899887654320 235555 999999999999999999999999999999999999998865 34445688
Q ss_pred cHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccch
Q psy8199 296 HKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEI 375 (965)
Q Consensus 296 ~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~ 375 (965)
++...+|+++|++.+|.+.++|+|++||+||++.|++++++++..+|.+++++||+++++|||++.+++++++.+.++..
T Consensus 93 ~~~~~~la~~l~~~~~~~~~~v~~~~ggseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~ 172 (459)
T 4a6r_A 93 HPAVVELSSLLAEVTPAGFDRVFYTNSGSESVDTMIRMVRRYWDVQGKPEKKTLIGRWNGYHGSTIGGASLGGMKYMHEQ 172 (459)
T ss_dssp CHHHHHHHHHHHHHSCTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCTTTC--
T ss_pred CHHHHHHHHHHHHhCCCCCCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHhhcCChhhccc
Confidence 99999999999999987889999999999999999999999998999899999999999999999999999998888888
Q ss_pred hcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhC-CCcEEEEEEccccccCCCcccCChHHHHHHHHHHHh
Q psy8199 376 YTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKN-HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNN 454 (965)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~-~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~ 454 (965)
+.+...++.+++.|..+......+.+.+...++++|++++.+. ++++++|++|| +++++|.++++++||++|+++|++
T Consensus 173 ~~~~~~~~~~~~~p~~~~~~~~~d~~~~~~~~~~~le~~i~~~~~~~~~~vi~ep-~~~~~G~~~~~~~~l~~l~~l~~~ 251 (459)
T 4a6r_A 173 GDLPIPGMAHIEQPWWYKHGKDMTPDEFGVVAARWLEEKILEIGADKVAAFVGEP-IQGAGGVIVPPATYWPEIERICRK 251 (459)
T ss_dssp -CCSCSSEEEECCCCHHHHCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECS-SBTTTTCBCCCTTHHHHHHHHHHH
T ss_pred cCCCCCCCEEeCCCccccCCcccCHHHHHHHHHHHHHHHHHHcCCCCEEEEEECC-ccCCCCcccCCHHHHHHHHHHHHH
Confidence 8888888888887753331111455667777899999999754 35799999999 999999999999999999999999
Q ss_pred cCCeEEEeccccCCCcccccccccccCCCcceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHH
Q psy8199 455 YNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLA 534 (965)
Q Consensus 455 ~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~ 534 (965)
||++||+||||+||||+|++++++++++.||++||||+|+||++|+|++++++++++.+... ..+.+++||++||++
T Consensus 252 ~~~llI~DEv~~g~gr~G~~~~~~~~~~~pdi~t~sK~l~gg~~~lg~v~~~~~i~~~~~~~---~~~~~~~t~~~~~~~ 328 (459)
T 4a6r_A 252 YDVLLVADEVICGFGRTGEWFGHQHFGFQPDLFTAAKGLSSGYLPIGAVFVGKRVAEGLIAG---GDFNHGFTYSGHPVC 328 (459)
T ss_dssp TTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEEEECGGGGTTSSCCEEEEECHHHHHHHHHH---CTTHHHHHHCSCHHH
T ss_pred cCCEEEEeccccCCCcccccchHhhcCCCCCeeehhhhhcCCCCCccceeeCHHHHHHhhcC---CCcccCCCCCCCHHH
Confidence 99999999999999999998899999999999999999999989999999999999988631 235688999999999
Q ss_pred HHHHHHHHHHHhcccHHHHHH-HHHHHHHHHH-HcccCCCceeeeeceeEEEEEEEeecCccc------hhhHHHHHHHH
Q psy8199 535 CCAALATLEIFNKDNILQRIS-QDMKKITKAL-TSLITHPKIINFRQKGMIWAFDVIIEDPEQ------IETFSKKFFVA 606 (965)
Q Consensus 535 ~aaa~a~L~~~~~~~~~~~~~-~~~~~l~~~L-~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~------~~~~~~~~~~~ 606 (965)
|++++++|+.++++++.++++ ++++++++.| +.+.+++.+..+++.|+|+++++. .+..+ .......+.+.
T Consensus 329 ~aaa~aal~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 407 (459)
T 4a6r_A 329 AAVAHANVAALRDEGIVQRVKDDIGPYMQKRWRETFSRFEHVDDVRGVGMVQAFTLV-KNKAKRELFPDFGEIGTLCRDI 407 (459)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHTHHHHHHHHHHHHHTTCTTEEEEEEETTEEEEEEC-SBTTTTBCCSSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEEEEEEEEe-cCccccccccchHHHHHHHHHH
Confidence 999999999988888999999 9999999999 777778889999999999999986 22111 12235578889
Q ss_pred HHHcCcEEeecCCEEEEeCCcccCHHHHHHHHHhhhcccccH
Q psy8199 607 ALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNEL 648 (965)
Q Consensus 607 l~~~Gi~~~~~~~~lR~~p~~~~t~~~i~~~~~~l~~~~~~~ 648 (965)
|+++||+++|.++++||+||+++++++++++++++.+++.+.
T Consensus 408 l~~~Gv~v~~~g~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 449 (459)
T 4a6r_A 408 FFRNNLIMRACGDHIVSAPPLVMTRAEVDEMLAVAERCLEEF 449 (459)
T ss_dssp HHHTTEECEEETTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCeEEecCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999988999999999999999999999998776544
|
| >3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-57 Score=527.91 Aligned_cols=422 Identities=20% Similarity=0.346 Sum_probs=363.4
Q ss_pred ccccccccCcccccccc-cCCCce-----eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhcc-ccccCCCC
Q psy8199 223 KLGLIHPKNNLKLKWRI-NLPDDI-----SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLE-HVMLSNLT 295 (965)
Q Consensus 223 ~l~f~~p~~~~~~~~~~-~~p~~~-----~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~-~~~~~~~~ 295 (965)
.-++|||+++....... +.|+++ +||||.||++||||.+|+|+++|||+||+|++|+.+|++++. ++...+++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~~~~ 93 (460)
T 3gju_A 14 RDHFFHPSTHMGTHARGESPTRIMAGGEGVTVWDNNGRKSIDAFAGLYCVNVGYGRQKIADAIATQAKNLAYYHAYVGHG 93 (460)
T ss_dssp HHHCCCTTSCHHHHHHTCSCCCCEEEEEBTEEEETTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHHSCCCCCTTCC
T ss_pred hcccccCccccccccccCCCceEEEEeeccEEEECCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccccccccccC
Confidence 45678998876542100 123555 999999999999999999999999999999999999998864 34445678
Q ss_pred cHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccch
Q psy8199 296 HKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEI 375 (965)
Q Consensus 296 ~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~ 375 (965)
++...+|+++|++.++.+.++|+|++||+||++.|++++++++..+|.+++++||+++++|||++.+++++++.+.++..
T Consensus 94 ~~~~~~la~~l~~~~~~~~~~v~~~~gGseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~ 173 (460)
T 3gju_A 94 TEASITLAKMIIDRAPKGMSRVYFGLSGSDANETNIKLIWYYNNVLGRPEKKKIISRWRGYHGSGVMTGSLTGLDLFHNA 173 (460)
T ss_dssp CHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCGGGTTT
T ss_pred CHHHHHHHHHHHhhCCCCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHhhccCCcccccc
Confidence 89999999999999887888999999999999999999999999999999999999999999999999999998888888
Q ss_pred hcccCCCeeEecCCCCCCCC-CCCChhHHHHHHHHHHHHHHHhC-CCcEEEEEEccccccCCCcccCChHHHHHHHHHHH
Q psy8199 376 YTSLLNKTYIITTPDSRNIN-KGNSANEIARCAIFDLEILLKKN-HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICN 453 (965)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~~le~~l~~~-~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~ 453 (965)
+.+...++.++|.|..++.. .+.+.+.+...++++|++++++. ++++++|++|| +++++|.++++++|+++|+++|+
T Consensus 174 ~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~le~~i~~~~~~~~aaii~ep-~~~~~G~~~~~~~~l~~l~~l~~ 252 (460)
T 3gju_A 174 FDLPRAPVLHTEAPYYFRRTDRSMSEEQFSQHCADKLEEMILAEGPETIAAFIGEP-ILGTGGIVPPPAGYWEKIQAVLK 252 (460)
T ss_dssp TTCSCTTEEEECCCCGGGCSCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECS-SBSTTTSBCCCTTHHHHHHHHHH
T ss_pred cCCCCCCCEEeCCCccccCCccccChhHHHHHHHHHHHHHHHhcCCCCEEEEEECC-ccCCCCCccCCHHHHHHHHHHHH
Confidence 88888888899887655433 35566777778899999999753 35799999999 99999999999999999999999
Q ss_pred hcCCeEEEeccccCCCcccccccccccCCCcceeeeccccCCCcccceeeeecHHHHHhhhcc-CCcccccccCCCCCCH
Q psy8199 454 NYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYK-NNINIFLHSHSYSGNP 532 (965)
Q Consensus 454 ~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~-~~~~~~~~~~t~~~~~ 532 (965)
+||++||+||||+||||+|++++++++++.||++||||+|+||++|+|++++++++++.+... .....+.|++||++||
T Consensus 253 ~~~~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~l~gG~~~lg~v~~~~~i~~~~~~~~~~~~~~~~~~t~~~~~ 332 (460)
T 3gju_A 253 KYDVLLVADEVVTGFGRLGTMFGSDHYGIKPDLITIAKGLTSAYAPLSGVIVADRVWQVLVQGSDKLGSLGHGWTYSAHP 332 (460)
T ss_dssp HTTCEEEEECTTTTTTTTSSSCHHHHHTCCCSEEEECGGGTTTSSCCEEEEEEHHHHHHHHHHHHHHCSCSCCCTTTTCH
T ss_pred HcCCEEEEeccccCCCcccccchHhhcCCCCCeeeeehhhcCCCCCeEEEEECHHHHHHHhcccccccccccCCCCCCCH
Confidence 999999999999999999998999999999999999999999988999999999999988531 0113467899999999
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcc-cCCCceeeeeceeEEEEEEEeecCccc------hhhHHHHHHH
Q psy8199 533 LACCAALATLEIFNKDNILQRISQDMKKITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDPEQ------IETFSKKFFV 605 (965)
Q Consensus 533 ~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l-~~~~~i~~v~g~G~~~~i~~~~~~~~~------~~~~~~~~~~ 605 (965)
++|++++++|+.++++++.++++++++++++.|.+. .+++.+..+++.|+|+++++. .+..+ ....+..+.+
T Consensus 333 ~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 411 (460)
T 3gju_A 333 ICVAAGVANLELIDEMDLVTNAGETGAYFRAELAKAVGGHKNVGEVRGDGMLAAVEFV-ADKDDRVFFDASQKIGPQVAT 411 (460)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEETTEEEEEEC-SBTTTTBCCCGGGCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeeeEEEEEEEc-cCccccccccchHHHHHHHHH
Confidence 999999999999888889999999999999999654 677888999999999999986 22111 1123557888
Q ss_pred HHHHcCcEEeecC--CEEEEeCCcccCHHHHHHHHHhhhcccc
Q psy8199 606 AALKNELLLRPIG--NTVYLMPPYILNKNEIQHMTSAIFQTFN 646 (965)
Q Consensus 606 ~l~~~Gi~~~~~~--~~lR~~p~~~~t~~~i~~~~~~l~~~~~ 646 (965)
.|+++||+++|.+ +++||+||+++++++++++++++.+++.
T Consensus 412 ~l~~~Gv~v~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~ 454 (460)
T 3gju_A 412 ALAASGVIGRAMPQGDILGFAPPLCLTREQADIVVSKTADAVK 454 (460)
T ss_dssp HHHHTTEECEECSSSCEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHCCeEEecCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999976 8999999999999999999999887654
|
| >3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-57 Score=524.61 Aligned_cols=419 Identities=36% Similarity=0.651 Sum_probs=339.6
Q ss_pred ccccccccCcccccccccCCCce-----eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcH
Q psy8199 223 KLGLIHPKNNLKLKWRINLPDDI-----SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHK 297 (965)
Q Consensus 223 ~l~f~~p~~~~~~~~~~~~p~~~-----~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~ 297 (965)
.-.+|||++++.... ..|+.+ +||||.||++|||+.+++|++++||+||+|++|+.+|++++.+++...++++
T Consensus 10 ~~~~~~~~~~~~~~~--~~p~~~~~g~G~~v~d~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~~~~~ 87 (448)
T 3dod_A 10 KKHLWLPFTQMKDYD--ENPLIIESGTGIKVKDINGKEYYDGFSSVWLNVHGHRKKELDDAIKKQLGKIAHSTLLGMTNV 87 (448)
T ss_dssp HHHBCCTTCCHHHHH--HSCCEEEEEEBTEEEETTSCEEEETTHHHHTCSSCBSCHHHHHHHHHHHTTCSCCCCSSSEEH
T ss_pred hhccccccccccccc--CCCceEEEeeeCEEEECCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccCccccccCCH
Confidence 346788887654432 246655 9999999999999999999999999999999999999998766555678889
Q ss_pred HHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhc
Q psy8199 298 PVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYT 377 (965)
Q Consensus 298 ~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~ 377 (965)
...+++++|++.+|.+.++|+|++||+||++.|+++++.++...|.+++++||+++++|||++.+++++++.+.++..+.
T Consensus 88 ~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~al~~~~~~~~~~G~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~ 167 (448)
T 3dod_A 88 PATQLAETLIDISPKKLTRVFYSDSGAEAMEIALKMAFQYWKNIGKPEKQKFIAMKNGYHGDTIGAVSVGSIELFHHVYG 167 (448)
T ss_dssp HHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEEC------------------------
T ss_pred HHHHHHHHHHHhCCCCCCEEEEeCchHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCccHHHHHhcCCcccccccc
Confidence 99999999999998778899999999999999999999987777777799999999999999999999999888888888
Q ss_pred ccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccc-cCCCcccCChHHHHHHHHHHHhcC
Q psy8199 378 SLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQ-CAGGMIMYDSIYLKLVREICNNYN 456 (965)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~-~~~G~~~~~~~~l~~l~~l~~~~g 456 (965)
+..+++.++|.|..++.+ +.....+..+|+++|++++++.++++++|++|| ++ +++|.++++++|+++|+++|++||
T Consensus 168 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep-~~~~~~G~~~~~~~~l~~l~~l~~~~~ 245 (448)
T 3dod_A 168 PLMFESYKAPIPYVYRSE-SGDPDECRDQCLRELAQLLEEHHEEIAALSIES-MVQGASGMIVMPEGYLAGVRELCTTYD 245 (448)
T ss_dssp -----CEEECCCCCTTSS-SCCHHHHHHHHHHHHHHHHHHHGGGEEEEEEES-SEESTTTCEECCTTHHHHHHHHHHHTT
T ss_pred CCCCCceEeCCCccccCC-ccchhhhhHHHHHHHHHHHHhCCCCEEEEEEeC-cccCCCCeecCCHHHHHHHHHHHHHhC
Confidence 888888899988877766 667778899999999999985556899999999 88 999999999999999999999999
Q ss_pred CeEEEeccccCCCcccccccccccCCCcceeeeccccCCCcccceeeeecHHHHHhhhcc-CCcccccccCCCCCCHHHH
Q psy8199 457 IHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYK-NNINIFLHSHSYSGNPLAC 535 (965)
Q Consensus 457 ~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~-~~~~~~~~~~t~~~~~~~~ 535 (965)
++||+||||+||||+|.+++++++++.||++||||++++|++|+|++++++++++.+... .....+.+++||++||++|
T Consensus 246 ~~lI~DEv~~g~g~~g~~~a~~~~~~~~di~t~sK~l~~G~~~ig~v~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~ 325 (448)
T 3dod_A 246 VLMIVDEVATGFGRTGKMFACEHENVQPDLMAAGKGITGGYLPIAVTFATEDIYKAFYDDYENLKTFFHGHSYTGNQLGC 325 (448)
T ss_dssp CEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTTSSCCEEEEEEHHHHHTTCSCGGGCCCCCCCCTTTTCHHHH
T ss_pred CEEEEeccccCCCcccchhhhhhcCCCCCEEEecccccCCcCceEEEEECHHHHHHhhhccccCCcccccCCCCcCHHHH
Confidence 999999999999999999999999999999999999999856999999999999988541 0123467889999999999
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcccCCCceeeeeceeEEEEEEEeecCccch------hhHHHHHHHHHHH
Q psy8199 536 CAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQI------ETFSKKFFVAALK 609 (965)
Q Consensus 536 aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~------~~~~~~~~~~l~~ 609 (965)
++++++|+.++++++.++++++++++++.|+++..++.+..+++.|+|+++++. .+..+. ...+..+.+.|++
T Consensus 326 aaa~aal~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~ 404 (448)
T 3dod_A 326 AVALENLALFESENIVEQVAEKSKKLHFLLQDLHALPHVGDIRQLGFMCGAELV-RSKETKEPYPADRRIGYKVSLKMRE 404 (448)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEETTEEEEEEC-SBTTTTBCCCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeeEEEEEEEc-cCcccccccchhhHHHHHHHHHHHH
Confidence 999999999888889999999999999999887677888899999999999986 221111 0114568889999
Q ss_pred cCcEEeecCCEEEEeCCcccCHHHHHHHHHhhhcccc
Q psy8199 610 NELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFN 646 (965)
Q Consensus 610 ~Gi~~~~~~~~lR~~p~~~~t~~~i~~~~~~l~~~~~ 646 (965)
+||++.|.++++||+||+++++++++++++++.+.+.
T Consensus 405 ~Gv~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~ 441 (448)
T 3dod_A 405 LGMLTRPLGDVIAFLPPLASTAEELSEMVAIMKQAIH 441 (448)
T ss_dssp TTEECCEETTEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred CCcEEeccCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 9999999889999999999999999999999887654
|
| >3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-55 Score=510.76 Aligned_cols=395 Identities=29% Similarity=0.479 Sum_probs=346.1
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhH
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGAS 325 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGse 325 (965)
+||||.||++||||.+|+|+++|||+||+|++|+.++++++.+ +...++++...+++++|++.++.+.+ |+|++||+|
T Consensus 41 ~~v~d~~g~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~-~~~~~~~~~~~~la~~l~~~~~~~~~-v~~~~ggse 118 (452)
T 3n5m_A 41 CWVEDIQGKRYLDGMSGLWCVNSGYGRKELAEAAYKQLQTLSY-FPMSQSHEPAIKLAEKLNEWLGGEYV-IFFSNSGSE 118 (452)
T ss_dssp TEEEETTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHTTCCC-CCTTSEEHHHHHHHHHHHHHHTSCEE-EEEESSHHH
T ss_pred CEEEECCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhcCC-cccccCCHHHHHHHHHHHHhCCCCce-EEEeCchHH
Confidence 9999999999999999999999999999999999999998765 44568889999999999999986666 999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHH
Q psy8199 326 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIAR 405 (965)
Q Consensus 326 A~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (965)
|++.|++++++++..+|.+++++||+++++|||++.+++++++.+.++..+.+..+++.+++.|..+..+.+...+.+..
T Consensus 119 A~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (452)
T 3n5m_A 119 ANETAFKIARQYYAQKGEPHRYKFMSRYRGYHGNTMATMAATGQAQRRYQYEPFASGFLHVTPPDCYRMPGIERENIYDV 198 (452)
T ss_dssp HHHHHHHHHHHHHHTTTCTTCCEEEEETTCCCCSSHHHHHSCCCGGGTTTTCCCCSCEEEECCCCTTTSTTTTTSCGGGC
T ss_pred HHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHHhcCCchhhccccCCCCCCCeEeCCCccccCccCCchhhHHH
Confidence 99999999999877777778999999999999999999999998887777888888888999887766665444455666
Q ss_pred HHHHHHHHHHH-hCCCcEEEEEEcccc-ccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCC
Q psy8199 406 CAIFDLEILLK-KNHNKIAAIIIEPLV-QCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIW 483 (965)
Q Consensus 406 ~d~~~le~~l~-~~~~~~aaii~ep~v-~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~ 483 (965)
.++++|+++++ .+++++++|++|| + +| +|.++|+++|+++|+++|++||++||+||||+||||+|.+++++++++.
T Consensus 199 ~~~~~le~~l~~~~~~~~~~vi~ep-~~~n-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~~~~~~~~~~~ 276 (452)
T 3n5m_A 199 ECVKEVDRVMTWELSETIAAFIMEP-IITG-GGILMAPQDYMKAVHETCQKHGALLISDEVICGFGRTGKAFGFMNYDVK 276 (452)
T ss_dssp HHHHHHHHHHHHHCGGGEEEEEECS-SBTT-TTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTCC
T ss_pred HHHHHHHHHHHhcCCCCEEEEEEcc-ccCC-CCeeeCCHHHHHHHHHHHHHcCCEEEEecchhCCCcccccchhhhcCCC
Confidence 77999999997 3346799999999 7 89 9999999999999999999999999999999999999999999999999
Q ss_pred cceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Q psy8199 484 PDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITK 563 (965)
Q Consensus 484 pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~ 563 (965)
||++||||++++||+|+|++++++++++.+......+.+.+++||++||++|++++++|+.++++++.++++++++++++
T Consensus 277 ~di~t~sK~l~~G~~~ig~~~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~ 356 (452)
T 3n5m_A 277 PDIITMAKGITSAYLPLSATAVKREIYEAFKGKGEYEFFRHINTFGGNPAACALALKNLEIIENENLIERSAQMGSLLLE 356 (452)
T ss_dssp CSEEEECGGGGTTSSCCEEEEEEHHHHGGGCSSSTTCSCCCCCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred CCEEeecccccCCCcceEEEEECHHHHHHHhhccCCCCccccCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 99999999999987899999999999998853111245678999999999999999999998888899999999999999
Q ss_pred HHHcc-cCCCceeeeeceeEEEEEEEeecCccch----hhHHHHHHHHHHHcCcEEeecC-------CEEEEeCCcccCH
Q psy8199 564 ALTSL-ITHPKIINFRQKGMIWAFDVIIEDPEQI----ETFSKKFFVAALKNELLLRPIG-------NTVYLMPPYILNK 631 (965)
Q Consensus 564 ~L~~l-~~~~~i~~v~g~G~~~~i~~~~~~~~~~----~~~~~~~~~~l~~~Gi~~~~~~-------~~lR~~p~~~~t~ 631 (965)
.|+++ .+++.+..+++.|+|+++++. .+..+. ......+.+.|+++||++.|.+ +++||+||+++++
T Consensus 357 ~L~~~~~~~~~~~~~~~~g~~~~i~~~-~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~~~~iRi~~~~~~t~ 435 (452)
T 3n5m_A 357 QLKEEIGEHPLVGDIRGKGLLVGIELV-NDKETKEPIDNDKIASVVNACKEKGLIIGRNGMTTAGYNNILTLAPPLVISS 435 (452)
T ss_dssp HHHHHHTTCTTEEEEEESSSCEEEEEE-EETTTTEECCHHHHHHHHHHHHHTTEECEECTTSSTTCCCEEEECCCTTCCH
T ss_pred HHHHHHhcCCCeEEEEEEEEEEEEEEe-cCCcccCCCCHHHHHHHHHHHHHCCcEEeecCcccCCCCCEEEEECCCCCCH
Confidence 99887 677888899999999999985 221111 1224468889999999999864 7999999999999
Q ss_pred HHHHHHHHhhhccc
Q psy8199 632 NEIQHMTSAIFQTF 645 (965)
Q Consensus 632 ~~i~~~~~~l~~~~ 645 (965)
++++++++++.+++
T Consensus 436 e~i~~~l~~l~~~l 449 (452)
T 3n5m_A 436 EEIAFVIGTLKTAM 449 (452)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999987654
|
| >4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-54 Score=501.52 Aligned_cols=385 Identities=26% Similarity=0.411 Sum_probs=336.4
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCC-CCeEEEcCChh
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYK-LGHCFYGSDGA 324 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~-~~~v~~~~sGs 324 (965)
+||||.||++||||.+++|+++|||+||+|++|+.+|++++.+++...++++...+|+++|++.+|.. .++|+|++||+
T Consensus 56 ~~v~d~~G~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sGs 135 (453)
T 4ffc_A 56 GVIVDADGNSFIDLGAGIAVTTVGASHPAVAAAIADQATHFTHTCFMVTPYEQYVQVAELLNALTPGDHDKRTALFNSGA 135 (453)
T ss_dssp TEEEETTSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHHHCSCCTTTTSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHH
T ss_pred CEEEeCCCCEEEEcCCCcccCcCCCCCHHHHHHHHHHHHhccccccCcCCCHHHHHHHHHHHHhCCCCCCcEEEEeCcHH
Confidence 99999999999999999999999999999999999999988776656788999999999999999754 57999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCc-CccchhcccCCCeeEecCCCCCCCCCCCChhHH
Q psy8199 325 SAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQ-SFKEIYTSLLNKTYIITTPDSRNINKGNSANEI 403 (965)
Q Consensus 325 eA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (965)
||++.|+++++.+ +++++||+++++|||++.+++++++.. .++..+.++..++.++|.|..++.+.+.+..+.
T Consensus 136 eA~~~alk~a~~~------~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 209 (453)
T 4ffc_A 136 EAVENAIKVARLA------TGRPAVVAFDNAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYRMPASYPLRDEPGLTGEEA 209 (453)
T ss_dssp HHHHHHHHHHHHH------HCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCTTTSCTTCCHHHH
T ss_pred HHHHHHHHHHHHh------cCCCEEEEEcCccCCcchHHHhhcCCCcccccCCCCCCCCcEEeCCCccccCccccchHHH
Confidence 9999999999987 478999999999999999999999865 677778888888889998866555555554444
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCC
Q psy8199 404 ARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIW 483 (965)
Q Consensus 404 ~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~ 483 (965)
-..++++|++.+. ++++++|++|| +++++|.++++++|+++|+++|++||++||+||||+||||+|.+++++++++.
T Consensus 210 ~~~~~~~l~~~i~--~~~~aavi~ep-~~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~~~a~~~~~~~ 286 (453)
T 4ffc_A 210 ARRAISRIETQIG--AQSLAAIIIEP-IQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFARTGAWFASEHEGIV 286 (453)
T ss_dssp HHHHHHHHHHHTC--GGGEEEEEECS-SBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCC
T ss_pred HHHHHHHHHHhcC--CCCEEEEEEcC-CCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccCCCcccccchhhhcCCC
Confidence 4455677776663 45799999999 99999999999999999999999999999999999999999999999999999
Q ss_pred cceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Q psy8199 484 PDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITK 563 (965)
Q Consensus 484 pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~ 563 (965)
||++||||++++| +|+|++++++++++.+.. ..+++||++||++|++++++|+.++++++.++++++++++++
T Consensus 287 pdi~t~sK~~~~G-~~~G~~~~~~~i~~~~~~------~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~ 359 (453)
T 4ffc_A 287 PDIVTMAKGIAGG-MPLSAVTGRAELMDAVYA------GGLGGTYGGNPVTCAAAVAALGVMRELDLPARARAIEASVTS 359 (453)
T ss_dssp CSEEEECGGGGTT-SSCEEEEEEHHHHTTSCT------TSSCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred cchHhhhhhhcCC-cCeEEEEECHHHHhhhcc------cCcCCCCCcCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 9999999999998 899999999999988764 358899999999999999999998888899999999999999
Q ss_pred HHHcc-cCCCceeeeeceeEEEEEEEeecC-ccchhhHHHHHHHHHHHcCcEEeecC---CEEEEeCCcccCHHHHHHHH
Q psy8199 564 ALTSL-ITHPKIINFRQKGMIWAFDVIIED-PEQIETFSKKFFVAALKNELLLRPIG---NTVYLMPPYILNKNEIQHMT 638 (965)
Q Consensus 564 ~L~~l-~~~~~i~~v~g~G~~~~i~~~~~~-~~~~~~~~~~~~~~l~~~Gi~~~~~~---~~lR~~p~~~~t~~~i~~~~ 638 (965)
.|+++ .+++.+..+++.|+|+++++.... ..+.......+.+.|+++||++.|.+ +.+||+||++++++++++++
T Consensus 360 ~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~~~~~~t~e~i~~~l 439 (453)
T 4ffc_A 360 RLSALAEEVDIIGEVRGRGAMLAIEIVKPGTLEPDAALTKSIAAEALSQGVLILTCGTFGNVIRLLPPLVIGDDLLDEGI 439 (453)
T ss_dssp HHHHHHHHCSSEEEEEEETTEEEEEEBCTTSCCBCHHHHHHHHHHHHHTTEECCEECTTSCEEEECCCTTCCHHHHHHHH
T ss_pred HHHHHHhhCCCeEEEEeeceEEEEEEecCcccCCCHHHHHHHHHHHHhCCCEEecCCCCCCEEEEECCCCCCHHHHHHHH
Confidence 99887 677888899999999999986210 01122345678899999999999854 79999999999999999999
Q ss_pred Hhhhcccc
Q psy8199 639 SAIFQTFN 646 (965)
Q Consensus 639 ~~l~~~~~ 646 (965)
+++.+++.
T Consensus 440 ~~l~~~l~ 447 (453)
T 4ffc_A 440 TALSDIIR 447 (453)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99876553
|
| >3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-54 Score=500.27 Aligned_cols=386 Identities=26% Similarity=0.403 Sum_probs=333.4
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCC-CCeEEEcCChh
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYK-LGHCFYGSDGA 324 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~-~~~v~~~~sGs 324 (965)
+||||.||++||||.+++|+++|||+||+|++|+.+|++++.+++...++++...+|+++|++.+|.. .++|+|++||+
T Consensus 53 ~~v~d~~g~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sGs 132 (451)
T 3oks_A 53 GIVEDVDGNRLIDLGSGIAVTTVGNSAPKVVEAVRSQVGDFTHTCFMVTPYEGYVAVCEQLNRLTPVRGDKRSALFNSGS 132 (451)
T ss_dssp TEEEETTSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHTTCSCCTTTTSCCHHHHHHHHHHHHHSSCCSSEEEEEESSHH
T ss_pred CEEEECCCCEEEEcCCCccccccCCCCHHHHHHHHHHHHhcccccCCccCCHHHHHHHHHHHHhCCcCCCCEEEEeCcHH
Confidence 99999999999999999999999999999999999999988776656688999999999999998743 57999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCc-CccchhcccCCCeeEecCCCCCCCCC-CCChhH
Q psy8199 325 SAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQ-SFKEIYTSLLNKTYIITTPDSRNINK-GNSANE 402 (965)
Q Consensus 325 eA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 402 (965)
||++.|+++++.+ +++++||+++++|||++.+++++++.. .++..+.+...++.++|.|..++.+. +.+.+.
T Consensus 133 eA~~~Alk~a~~~------~g~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 206 (451)
T 3oks_A 133 EAVENAVKIARSH------THKPAVVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKELAT 206 (451)
T ss_dssp HHHHHHHHHHHHH------HCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTCCSCCSSEEEECCCCHHHHGGGCTTTTT
T ss_pred HHHHHHHHHHHHh------cCCCeEEEEcCCcCCccHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccccch
Confidence 9999999999987 478999999999999999999999864 67777888888888888874332211 222233
Q ss_pred HHHHHHHHHHHHHHhC--CCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccccccccccc
Q psy8199 403 IARCAIFDLEILLKKN--HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHA 480 (965)
Q Consensus 403 ~~~~d~~~le~~l~~~--~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~ 480 (965)
+...+++.+++.+++. ++++++|++|| +++++|.+.++++|+++|+++|++||++||+||||+||||+|.+++++++
T Consensus 207 ~~~~~~~~~~~~l~~~~~~~~~aavi~ep-~~~~gG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~ 285 (451)
T 3oks_A 207 DGELAAKRAITVIDKQIGADNLAAVVIEP-IQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTGAMFACEHE 285 (451)
T ss_dssp CHHHHHHHHHHHHHHHTCGGGEEEEEECS-SBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGG
T ss_pred hhHHHHHHHHHHHHhhcCCCCEEEEEEcC-CcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCCccccchhhhhc
Confidence 3445677777666542 46799999999 99999999999999999999999999999999999999999999999999
Q ss_pred CCCcceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Q psy8199 481 EIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKK 560 (965)
Q Consensus 481 ~~~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~ 560 (965)
++.||++||||++++| +|+|++++++++++.+.. ..+++||++||++|++++++|+.++++++.+++++++++
T Consensus 286 ~~~pdi~t~sK~l~~G-~~iG~v~~~~~~~~~~~~------~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~ 358 (451)
T 3oks_A 286 GIDPDLIVTAKGIAGG-LPLSAVTGRAEIMDSPHV------SGLGGTYGGNPIACAAALATIETIESEGLVARAQQIEKI 358 (451)
T ss_dssp TCCCSEEEECGGGGTT-SSCEEEEEEHHHHTCSCT------TSBCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred CCCCCeeeehhhhhCC-cceEEEEECHHHHhhhcC------CCcCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 9999999999999998 899999999999988764 358899999999999999999998888899999999999
Q ss_pred HHHHHHcc-cCCCceeeeeceeEEEEEEEeecC-ccchhhHHHHHHHHHHHcCcEEeecC---CEEEEeCCcccCHHHHH
Q psy8199 561 ITKALTSL-ITHPKIINFRQKGMIWAFDVIIED-PEQIETFSKKFFVAALKNELLLRPIG---NTVYLMPPYILNKNEIQ 635 (965)
Q Consensus 561 l~~~L~~l-~~~~~i~~v~g~G~~~~i~~~~~~-~~~~~~~~~~~~~~l~~~Gi~~~~~~---~~lR~~p~~~~t~~~i~ 635 (965)
+++.|+++ .+++.+..+++.|+|+++++.... ..+.......+.+.|+++||++.|.+ +.+||+||+++++++++
T Consensus 359 l~~~L~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~~~~~~t~e~i~ 438 (451)
T 3oks_A 359 MKDRLGRLQAEDDRIGDVRGRGAMIAMELVKAGTTEPDADLTKALCAGAHAAGVIVLSCGTYGNVVRFLPPLSIGDDLLN 438 (451)
T ss_dssp HHHHHHHHHHHCTTEEEEEEETTEEEEEEBSTTSCCBCHHHHHHHHHHHHHTTEECEEECTTSCEEEECCCTTCCHHHHH
T ss_pred HHHHHHHHHhhCCCeEEEEEeeEEEEEEEecCccCCCCHHHHHHHHHHHHhCCcEEecCCCCCCEEEEECCCCCCHHHHH
Confidence 99999887 677888899999999999986210 01122345578889999999999854 79999999999999999
Q ss_pred HHHHhhhccc
Q psy8199 636 HMTSAIFQTF 645 (965)
Q Consensus 636 ~~~~~l~~~~ 645 (965)
++++++.+++
T Consensus 439 ~~l~~l~~~l 448 (451)
T 3oks_A 439 EGLDVLEEVL 448 (451)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999987654
|
| >3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-52 Score=479.80 Aligned_cols=387 Identities=25% Similarity=0.421 Sum_probs=316.2
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhH
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGAS 325 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGse 325 (965)
+|+||.||++|||+.+++|+++|||+||+|++|+.++++...+++...++++...++++++++.++.+.++|+|++||+|
T Consensus 21 ~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~gg~e 100 (430)
T 3i4j_A 21 VFLYDDAGRRYLDGSSGALVANIGHGRAEVGERMAAQAARLPFVHGSQFSSDVLEEYAGRLARFVGLPTFRFWAVSGGSE 100 (430)
T ss_dssp TEEEETTSCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCCCCCTTTCEEHHHHHHHHHHHHHTTCTTCEEEEESSHHH
T ss_pred CEEEECCCCEEEECCCchhccccCCCCHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCcHHH
Confidence 99999999999999999999999999999999999999887666555788999999999999999877899999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCC--CeeEecCCCCCCCCCCCChhHH
Q psy8199 326 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLN--KTYIITTPDSRNINKGNSANEI 403 (965)
Q Consensus 326 A~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 403 (965)
|++.|++++++++..+|.+++++||+++++|||++..++++++...++..+.++.+ ++.++|.++.++.
T Consensus 101 a~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 171 (430)
T 3i4j_A 101 ATESAVKLARQYHVERGEPGRFKVITRVPSYHGASLGSLAASGMGARRELYTPLMRPEAWPKLPKPDPARN--------- 171 (430)
T ss_dssp HHHHHHHHHHHHHHHTTCTTCCEEEEETTC-------------------------CGGGSCEECCCCTTSC---------
T ss_pred HHHHHHHHHHHHHHhcCCCCCcEEEEEeCCcCCCCcccccccCccccccccCCcCCCCCceEcCCCcccch---------
Confidence 99999999999988888888999999999999999999998887766666666666 7777777653321
Q ss_pred HHHHHHHHHHHHHhCC-CcEEEEEEcccccc-CCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccccccccccc-
Q psy8199 404 ARCAIFDLEILLKKNH-NKIAAIIIEPLVQC-AGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHA- 480 (965)
Q Consensus 404 ~~~d~~~le~~l~~~~-~~~aaii~ep~v~~-~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~- 480 (965)
...|+++|++++++.. +++++|++|| +++ ++|.++++++++++|+++|++||++||+||||+||||+|.+++++++
T Consensus 172 ~~~~~~~le~~l~~~~~~~~~~vi~~p-~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~~~~g~~~~~~~~~ 250 (430)
T 3i4j_A 172 GAEDAEGLRALLEREGPETVAAFMAEP-VVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRCGSPLALSRWS 250 (430)
T ss_dssp HHHHHTHHHHHHHHHCGGGEEEEEECS-SCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTT
T ss_pred hhHHHHHHHHHHHhcCCCCEEEEEEcC-cccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccchhhhhhhc
Confidence 3468899999997543 6789999999 899 99999999999999999999999999999999999999999999999
Q ss_pred CCCcceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Q psy8199 481 EIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKK 560 (965)
Q Consensus 481 ~~~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~ 560 (965)
++.||++||||++++||+|+|++++++++++.+.. ..+.+.+++||++||++|++++++|+.++++++.+++++++++
T Consensus 251 ~~~~di~t~sK~l~~G~~r~G~~~~~~~i~~~~~~--~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~ 328 (430)
T 3i4j_A 251 GVTPDIAVLGKGLAAGYAPLAGLLAAPQVYETVMG--GSGAFMHGFTYAGHPVSVAAGLSVLDIVEREDLTGAAKERGAQ 328 (430)
T ss_dssp TCCCSEEEECGGGTTTSSCCEEEEECHHHHHHHHH--TTCBCCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred CCCCcEEEEcccccCCccccEEEEECHHHHHHHhc--cCCcccccCCCCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 99999999999999987899999999999998875 2234678899999999999999999998878899999999999
Q ss_pred HHHHHHcc-cCCCceeeeeceeEEEEEEEeecCccch-----hhHHHHHHHHHHHcCcEEeec--------CCEEEEeCC
Q psy8199 561 ITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDPEQI-----ETFSKKFFVAALKNELLLRPI--------GNTVYLMPP 626 (965)
Q Consensus 561 l~~~L~~l-~~~~~i~~v~g~G~~~~i~~~~~~~~~~-----~~~~~~~~~~l~~~Gi~~~~~--------~~~lR~~p~ 626 (965)
+++.|+++ .++|.+..+++.|+|+.+++. +.... ...+..+.+.|+++||+++|. ++++||+|+
T Consensus 329 ~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~~~~iRi~~~ 406 (430)
T 3i4j_A 329 LLAGLQALQARFPQMMQVRGTGLLLGVVLG--DLATGQAFETPGIASRIGAAALKRGLITYPGSGAEPNGRGDHLLLGPP 406 (430)
T ss_dssp HHHHHHHHHHHCTTEEEEEEETTEEEEEEC--------------CHHHHHHHHHHTTEECC-----------CEEEECCC
T ss_pred HHHHHHHHHHhCCCeEEEEEEEEEEEEEec--cccccCCCccHHHHHHHHHHHHhCCCEEEecccccCCCCCCEEEEECC
Confidence 99999887 477888899999999999885 21111 112356888999999999986 578999999
Q ss_pred cccCHHHHHHHHHhhhcccc
Q psy8199 627 YILNKNEIQHMTSAIFQTFN 646 (965)
Q Consensus 627 ~~~t~~~i~~~~~~l~~~~~ 646 (965)
+.+++++++++++++.+.+.
T Consensus 407 ~~~t~e~i~~~l~~l~~~l~ 426 (430)
T 3i4j_A 407 LSITAAEVDGLLALLAGALE 426 (430)
T ss_dssp TTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999876653
|
| >3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-49 Score=462.23 Aligned_cols=418 Identities=25% Similarity=0.402 Sum_probs=342.7
Q ss_pred ccccccccCcccccccccCCCce-----eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccC-CCCc
Q psy8199 223 KLGLIHPKNNLKLKWRINLPDDI-----SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLS-NLTH 296 (965)
Q Consensus 223 ~l~f~~p~~~~~~~~~~~~p~~~-----~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~-~~~~ 296 (965)
.-.+|||++...... ..|+.+ +|+||.||++|||+.+++|++++||+||+|++|+.+++++.. ++.. .+.+
T Consensus 16 ~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~~~-~~~~~~~~~ 92 (449)
T 3a8u_X 16 LDAHWMPYTANRNFL--RDPRLIVAAEGSWLVDDKGRKVYDSLSGLWTCGAGHTRKEIQEAVAKQLSTLD-YSPGFQYGH 92 (449)
T ss_dssp GGGSCCTTSCHHHHH--HSCCCEEEEEBTEEEETTCCEEEETTHHHHTCTTCBSCHHHHHHHHHHTTTCS-CCCSSSCCC
T ss_pred hcccccccccccccc--CCCceEEeeecCEEEECCCCEEEECCccHhhccCCCCCHHHHHHHHHHHHhCC-CccccccCC
Confidence 345788887764321 145555 999999999999999999999999999999999999998754 2222 6778
Q ss_pred HHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchh
Q psy8199 297 KPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIY 376 (965)
Q Consensus 297 ~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~ 376 (965)
+...++++++++.++.+.++|+|++||++|++.|+++++.++..+|.+++++||+++++|||++..++..++.+.++..+
T Consensus 93 ~~~~~l~~~la~~~~~~~~~v~~~~ggsea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~ 172 (449)
T 3a8u_X 93 PLSFQLAEKITDLTPGNLNHVFFTDSGSECALTAVKMVRAYWRLKGQATKTKMIGRARGYHGVNIAGTSLGGVNGNRKLF 172 (449)
T ss_dssp HHHHHHHHHHHTTSSTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCHHHHTTT
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEcCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCChhhhhccCChhhcccc
Confidence 88999999999999877889999999999999999999988878888788999999999999998888887765555556
Q ss_pred cccCCCeeEecCCCCCCCC-CCCChhHHHHHHHHHHHHHHHhCC-CcEEEEEEccccccCCCcccCChHHHHHHHHHHHh
Q psy8199 377 TSLLNKTYIITTPDSRNIN-KGNSANEIARCAIFDLEILLKKNH-NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNN 454 (965)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~~le~~l~~~~-~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~ 454 (965)
.+...++..++.|..+... .+.+.+.+...++++|++++++.+ +++++|++|| +++++|.+.++++|+++|+++|++
T Consensus 173 ~~~~~~~~~v~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~vi~~p-~~~~tG~~~~~~~~l~~l~~l~~~ 251 (449)
T 3a8u_X 173 GQPMQDVDHLPHTLLASNAYSRGMPKEGGIALADELLKLIELHDASNIAAVFVEP-LAGSAGVLVPPEGYLKRNREICNQ 251 (449)
T ss_dssp CCCSCSEEEECCCCCGGGTTCSSSCSSSHHHHHHHHHHHHHHHCGGGEEEEEECS-SBTTTTCBCCCTTHHHHHHHHHHH
T ss_pred CCCCCCCeEecCCccccCccccCChHHHHHHHHHHHHHHHHhcCCCCEEEEEEcC-ccCCCCCccCCHHHHHHHHHHHHH
Confidence 6666677777766432211 111223345567899999997543 5789999999 888899999999999999999999
Q ss_pred cCCeEEEeccccCCCcccccccccccCCCcceeeeccccCCCcccceeeeecHHHHHhhhccC---CcccccccCCCCCC
Q psy8199 455 YNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKN---NINIFLHSHSYSGN 531 (965)
Q Consensus 455 ~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~---~~~~~~~~~t~~~~ 531 (965)
||++||+||||+||||+|.+++++++++.||+++|||++++|++|+|++++++++++.+.... ....+.+++|+++|
T Consensus 252 ~~~~li~Dev~~~~g~~g~~~~~~~~~~~~di~s~sK~l~~G~~~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~~~~ 331 (449)
T 3a8u_X 252 HNILLVFDEVITGFGRTGSMFGADSFGVTPDLMCIAKQVTNGAIPMGAVIASTEIYQTFMNQPTPEYAVEFPHGYTYSAH 331 (449)
T ss_dssp HTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEEEECGGGGTTSSCCEEEEEEHHHHHHHHTCSSCTTSCSSCCCCTTTTC
T ss_pred hCCEEEEeccccCccccCcchhhhhcCCCCCEEEEcccccCCCCceEEEEECHHHHHHhhccCcccccccccccCCCccc
Confidence 999999999999999999878888889999999999999998789999999999998886521 11234577899999
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcC
Q psy8199 532 PLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNE 611 (965)
Q Consensus 532 ~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~G 611 (965)
+++++++.++|+.++++++.++++++++++++.|+++..++.+..+++.|+|+++++. .+..........+.+.|.++|
T Consensus 332 ~~~~aa~~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~-~~~~~~~~~~~~~~~~l~~~G 410 (449)
T 3a8u_X 332 PVACAAGLAALCLLQKENLVQSVAEVAPHFEKALHGIKGAKNVIDIRNFGLAGAIQIA-PRDGDAIVRPFEAGMALWKAG 410 (449)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHTTTTSTTEEEEEEETTEEEEEEC-CBTTBSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeeEEEEEEEEe-cCcccccccHHHHHHHHHHCC
Confidence 9999999999999887789999999999999999887556777778899999999885 211111001225778888999
Q ss_pred cEEeecCCEEEEeCCcccCHHHHHHHHHhhhccc
Q psy8199 612 LLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 612 i~~~~~~~~lR~~p~~~~t~~~i~~~~~~l~~~~ 645 (965)
|++++.++++||+||+.+++++++++++++.+++
T Consensus 411 v~v~~~g~~iRis~~~~~t~~~i~~~l~~l~~~l 444 (449)
T 3a8u_X 411 FYVRFGGDTLQFGPTFNSKPQDLDRLFDAVGEVL 444 (449)
T ss_dssp EECEEETTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred cEEecCCCEEEEECCCcCCHHHHHHHHHHHHHHH
Confidence 9999988999999999999999999999987654
|
| >1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-49 Score=456.52 Aligned_cols=366 Identities=26% Similarity=0.397 Sum_probs=296.1
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhH
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGAS 325 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGse 325 (965)
+|+||.||++|||+.+|+++++|||+||+|++|+.+|+++..+++ ..++++...+++++|++.++ .++|+|++||+|
T Consensus 57 ~~~~d~~G~~ylD~~~g~~~~~lgh~~p~v~~ai~~~~~~~~~~~-~~~~~~~~~~l~~~la~~~g--~~~v~~~~sGse 133 (433)
T 1z7d_A 57 VFVYDVNDKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLTICS-RAFFSVPLGICERYLTNLLG--YDKVLMMNTGAE 133 (433)
T ss_dssp TEEEETTCCEEEESSHHHHTTTTCBTCHHHHHHHHHHHTTCSCCC-TTSEEHHHHHHHHHHHHHHT--CSEEEEESSHHH
T ss_pred CEEEECCCCEEEEcccchhhcccCCCCHHHHHHHHHHHHhCCCcc-CCcCCHHHHHHHHHHHhhcC--CCeEEEeCCHHH
Confidence 899999999999999999999999999999999999998865543 34678889999999999984 789999999999
Q ss_pred HHHHHHHHHHHHHH-hcCC-CCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHH
Q psy8199 326 AVEVALKMSFHYWY-NKGF-LNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEI 403 (965)
Q Consensus 326 A~~~Al~~a~~~~~-~~g~-~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (965)
|++.|+++++.|+. .+|. +++++||+++++|||++..++++++.+.++..+.+...++..+|.
T Consensus 134 A~~~al~~a~~~~~~~~g~~~gr~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~--------------- 198 (433)
T 1z7d_A 134 ANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPY--------------- 198 (433)
T ss_dssp HHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC--------------------------CEEEECT---------------
T ss_pred HHHHHHHHHHHHhhhccCCCCCCCeEEEEeCCcCCcchhhhcccCCccccccCCCCCCCeEEeCC---------------
Confidence 99999999987532 2232 356899999999999998888887755555555555556666654
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCC
Q psy8199 404 ARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIW 483 (965)
Q Consensus 404 ~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~ 483 (965)
+|+++|+++++ .+++++|++|| +++++|.++++++++++|+++|++||++||+||||+||||+|.+++++++++.
T Consensus 199 --~d~~~le~~l~--~~~~~~vi~ep-~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g~~g~~~~~~~~~~~ 273 (433)
T 1z7d_A 199 --DDLEALEEELK--DPNVCAFIVEP-IQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCVHHYNVK 273 (433)
T ss_dssp --TCHHHHHHHHT--STTEEEEEECS-SBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCC
T ss_pred --CCHHHHHHHhC--CCCEEEEEEEC-CCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCccCCCcCCcchhhHhcCCC
Confidence 36889999985 35689999999 89999999899999999999999999999999999999999998888999999
Q ss_pred cceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Q psy8199 484 PDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITK 563 (965)
Q Consensus 484 pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~ 563 (965)
||++||||++++|++|+|++++++++++.+.. ..+++||++||++|++++++|+.++++++.++++++++++++
T Consensus 274 ~di~t~sK~l~~G~~~~G~v~~~~~~~~~l~~------~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~ 347 (433)
T 1z7d_A 274 PDVILLGKALSGGHYPISAVLANDDIMLVIKP------GEHGSTYGGNPLAASICVEALNVLINEKLCENAEKLGGPFLE 347 (433)
T ss_dssp CSEEEECGGGGTTSSCCEEEEECHHHHTTCCT------TCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred CCEEEECccccCCCCCeEEEEECHHHHhhhcc------ccccccCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 99999999999886899999999999887754 247899999999999999999998877899999999999999
Q ss_pred HHHcc-cCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec-CCEEEEeCCcccCHHHHHHHHHhh
Q psy8199 564 ALTSL-ITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-GNTVYLMPPYILNKNEIQHMTSAI 641 (965)
Q Consensus 564 ~L~~l-~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-~~~lR~~p~~~~t~~~i~~~~~~l 641 (965)
+|+++ ..++.+..+++.|+|+++++. .+. .....+.+.|.++||++.|. ++++|++||+.+++++++++++++
T Consensus 348 ~L~~l~~~~~~~~~~~~~g~~~~i~~~-~~~----~~~~~~~~~l~~~Gv~v~~~~~~~iRi~~~~~~t~e~i~~~l~~l 422 (433)
T 1z7d_A 348 NLKRELKDSKIVRDVRGKGLLCAIEFK-NEL----VNVLDICLKLKENGLITRDVHDKTIRLTPPLCITKEQLDECTEII 422 (433)
T ss_dssp HHHHHHTTCTTEEEEEEETTEEEEEEC-TTT----CCHHHHHHHHHHTTEECCEETTTEEEECCCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCeEEEEeeeeEEEEEEc-cCh----hHHHHHHHHHHHCCeEEecCCCCEEEEECCcCCCHHHHHHHHHHH
Confidence 99887 366777788999999999885 210 11446888899999999986 479999999999999999999998
Q ss_pred hccc
Q psy8199 642 FQTF 645 (965)
Q Consensus 642 ~~~~ 645 (965)
.+++
T Consensus 423 ~~~l 426 (433)
T 1z7d_A 423 VKTV 426 (433)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
|
| >2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-49 Score=455.88 Aligned_cols=366 Identities=28% Similarity=0.430 Sum_probs=313.2
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhH
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGAS 325 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGse 325 (965)
+|+||.||++|||+.+|+++.+|||+||+|++|+.+++++..+++ ..++++...+++++++++++ .++|+|++||+|
T Consensus 68 ~~~~d~~g~~ylD~~sg~~~~~lgh~~p~v~~Ai~~~~~~~~~~~-~~~~~~~~~~l~~~la~~~g--~~~v~~~~sGse 144 (439)
T 2oat_A 68 IYLWDVEGRKYFDFLSSYSAVNQGHCHPKIVNALKSQVDKLTLTS-RAFYNNVLGEYEEYITKLFN--YHKVLPMNTGVE 144 (439)
T ss_dssp TEEEETTCCEEEESSGGGGTTTTCBTCHHHHHHHHHHHTTCSCCC-TTSEESSHHHHHHHHHHHHT--CSEEEEESSHHH
T ss_pred CEEEECCCCEEEEccCCcccccCCCCCHHHHHHHHHHHHhcCccc-CccCCHHHHHHHHHHHHhcC--CCEEEEeCCHHH
Confidence 899999999999999999999999999999999999998865543 24567889999999999984 789999999999
Q ss_pred HHHHHHHHHHHHHH-hcCC-CCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHH
Q psy8199 326 AVEVALKMSFHYWY-NKGF-LNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEI 403 (965)
Q Consensus 326 A~~~Al~~a~~~~~-~~g~-~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (965)
|++.|+++++.|+. .+|. +++++||+++++|||++..++++++.+.++..+.++..++..+|.
T Consensus 145 A~~~al~~~~~~~~~~~g~~~g~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~--------------- 209 (439)
T 2oat_A 145 AGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPY--------------- 209 (439)
T ss_dssp HHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCSSHHHHTTCCCHHHHTTSCSCCTTEEEECS---------------
T ss_pred HHHHHHHHHHHHhhhccCCCCCCCeEEEEcCCCCCCCHhHhhcCCChhcccCCCCCCCCeEEeCC---------------
Confidence 99999999987642 2232 355899999999999998888887755444555566566666665
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCC
Q psy8199 404 ARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIW 483 (965)
Q Consensus 404 ~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~ 483 (965)
+|+++|+++++ .+++++|++|| +++++|.+.++++++++|+++|++||++||+||||+||||+|.+++++++++.
T Consensus 210 --~d~~~le~~l~--~~~~~~vi~ep-~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~g~~g~~~~~~~~~~~ 284 (439)
T 2oat_A 210 --NDLPALERALQ--DPNVAAFMVEP-IQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVR 284 (439)
T ss_dssp --SCHHHHHHHTT--STTEEEEEECS-SBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCC
T ss_pred --CCHHHHHHHhC--CCCEEEEEEEC-CCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCcchhHHHhCCC
Confidence 36889998885 35689999999 89999999999999999999999999999999999999999998888999999
Q ss_pred cceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Q psy8199 484 PDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITK 563 (965)
Q Consensus 484 pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~ 563 (965)
||++||||+++||++|+|++++++++++.+.. ..+++||++||++|+++.++|+.++++++.++++++++++++
T Consensus 285 ~Di~t~sK~l~~G~~~~G~v~~~~~~~~~l~~------~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~ 358 (439)
T 2oat_A 285 PDIVLLGKALSGGLYPVSAVLCDDDIMLTIKP------GEHGSTYGGNPLGCRVAIAALEVLEEENLAENADKLGIILRN 358 (439)
T ss_dssp CSEEEECGGGGTTSSCCEEEEECHHHHTTSCT------TSSCCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred CcEEEecccccCCCCCeEEEEECHHHHhccCC------CCcccCCCcCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 99999999999986899999999999887754 347889999999999999999998877899999999999999
Q ss_pred HHHcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec-CCEEEEeCCcccCHHHHHHHHHhhh
Q psy8199 564 ALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-GNTVYLMPPYILNKNEIQHMTSAIF 642 (965)
Q Consensus 564 ~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-~~~lR~~p~~~~t~~~i~~~~~~l~ 642 (965)
.|+++ .++.+..+++.|+|+++++. .+.. .....+.+.|.++||++.|. ++++||+||+.+++++++++++++.
T Consensus 359 ~L~~l-~~~~~~~~~~~g~~~~v~l~-~~~~---~~~~~l~~~l~~~Gv~v~~~~~~~iRi~~~~~~t~e~i~~~l~~l~ 433 (439)
T 2oat_A 359 ELMKL-PSDVVTAVRGKGLLNAIVIK-ETKD---WDAWKVCLRLRDNGLLAKPTHGDIIRFAPPLVIKEDELRESIEIIN 433 (439)
T ss_dssp HHTTS-CTTTEEEEEEETTEEEEEEC-CCSS---CCHHHHHHHHHHTTEECCBSSSSEEEECCCTTCCHHHHHHHHHHHH
T ss_pred HHHHh-cCCCcEEEEeeeeEEEEEEe-cCcc---HHHHHHHHHHHHCCeEEecCCCCEEEEECccCCCHHHHHHHHHHHH
Confidence 99887 45666678999999999885 2110 11346888899999999986 4799999999999999999999887
Q ss_pred ccc
Q psy8199 643 QTF 645 (965)
Q Consensus 643 ~~~ 645 (965)
+++
T Consensus 434 ~~l 436 (439)
T 2oat_A 434 KTI 436 (439)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
|
| >3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-49 Score=454.22 Aligned_cols=367 Identities=19% Similarity=0.257 Sum_probs=305.6
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhH
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGAS 325 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGse 325 (965)
+|+||.||++|||+.+++|+++|||+||+|++|+.+|+++.. ..+++++...+|++++++.++ +.++|+|++||||
T Consensus 47 ~~~~d~~g~~ylD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~---~~~~~~~~~~~l~~~la~~~~-~~~~v~~~~sGse 122 (434)
T 3l44_A 47 AYFWDVDGNKYIDYLAAYGPIITGHAHPHITKAITTAAENGV---LYGTPTALEVKFAKMLKEAMP-ALDKVRFVNSGTE 122 (434)
T ss_dssp TEEEETTCCEEEECCGGGTTCSSCBTCHHHHHHHHHHHHHCS---CCSSCCHHHHHHHHHHHHHCT-TCSEEEEESSHHH
T ss_pred CEEEECCCCEEEECCCchhccccCCCCHHHHHHHHHHHHhCc---CCCCCCHHHHHHHHHHHHhCC-CCCEEEEeCchHH
Confidence 999999999999999999999999999999999999998752 235788999999999999998 7899999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchh-------cccCCCeeEecCCCCCCCCCCC
Q psy8199 326 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIY-------TSLLNKTYIITTPDSRNINKGN 398 (965)
Q Consensus 326 A~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~ 398 (965)
|++.|+++++.+ +++++||+++++|||++..++..++........ .+....+..+|.
T Consensus 123 a~~~ai~~a~~~------~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 186 (434)
T 3l44_A 123 AVMTTIRVARAY------TGRTKIMKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPQSIAQEVITVPF---------- 186 (434)
T ss_dssp HHHHHHHHHHHH------HCCCEEEEETTCCCCSSGGGGBC-------CCCBSSTTCCHHHHTTEEEECT----------
T ss_pred HHHHHHHHHHHh------hCCCEEEEEcCccCCCcHHHHhhcCCcccccCCCCcCCCCCcCCCceEecCc----------
Confidence 999999999887 478899999999999999988887743211100 000112333332
Q ss_pred ChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccccccccc
Q psy8199 399 SANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACE 478 (965)
Q Consensus 399 ~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~ 478 (965)
+|+++|+++++++++++++|++|| +++++|.+.++++|+++|+++|++||++||+||||+|| |+|.+++++
T Consensus 187 -------~d~~~le~~l~~~~~~~~~vi~ep-~~~~~G~~~~~~~~l~~l~~l~~~~~illI~DEv~~g~-~~g~~~~~~ 257 (434)
T 3l44_A 187 -------NNVETLKEALDKWGHEVAAILVEP-IVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAF-RFMYGGAQD 257 (434)
T ss_dssp -------TCHHHHHHHHHHHGGGEEEEEECS-SBCTTSCBCCCTTHHHHHHHHHHTTTCEEEEECTTTTT-TSSSSCHHH
T ss_pred -------ccHHHHHHHHHhCCCCEEEEEEcC-CCCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccce-eccccHHHH
Confidence 478999999976556899999999 99999999999999999999999999999999999999 999988899
Q ss_pred ccCCCcceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHH
Q psy8199 479 HAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDM 558 (965)
Q Consensus 479 ~~~~~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~ 558 (965)
++++.||++||||++++| +|+|++++++++++.+.. ...+.+++||++||++|++++++|+.++++++.+++++++
T Consensus 258 ~~~~~~di~t~sK~~~~G-~~iG~~~~~~~i~~~~~~---~~~~~~~~t~~~~~~a~aaa~aal~~~~~~~~~~~~~~~~ 333 (434)
T 3l44_A 258 LLGVTPDLTALGKVIGGG-LPIGAYGGKKEIMEQVAP---LGPAYQAGTMAGNPASMASGIACLEVLQQEGLYEKLDELG 333 (434)
T ss_dssp HHTCCCSEEEEEGGGGTT-SSCEEEEECHHHHTTBTT---TSSBCCCCTTTTCHHHHHHHHHHHHHHTSTTHHHHHHHHH
T ss_pred HcCCCCCeeehhhhhcCC-cCeeeEEEcHHHHHhhcc---CCCcccCCCCCcCHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 999999999999999988 899999999999988764 1235688999999999999999999988888999999999
Q ss_pred HHHHHHHHcc-cCCCceeeeeceeEEEEEEEeecCcc-------chhhHHHHHHHHHHHcCcEEeecC-CEEEEeCCccc
Q psy8199 559 KKITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDPE-------QIETFSKKFFVAALKNELLLRPIG-NTVYLMPPYIL 629 (965)
Q Consensus 559 ~~l~~~L~~l-~~~~~i~~v~g~G~~~~i~~~~~~~~-------~~~~~~~~~~~~l~~~Gi~~~~~~-~~lR~~p~~~~ 629 (965)
+++++.|+++ ..++.+..+++.|+|+.+++...... +.......+.+.|+++||++++.+ +.+|++ +++
T Consensus 334 ~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~rl~--~~~ 411 (434)
T 3l44_A 334 ATLEKGILEQAAKHNIDITLNRLKGALTVYFTTNTIEDYDAAQDTDGEMFGKFFKLMLQEGVNLAPSKYEAWFLT--TEH 411 (434)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEETTEEEEEESSSCCCSHHHHHHSCHHHHHHHHHHHHHTTEECCSSTTCCEECC--TTC
T ss_pred HHHHHHHHHHHHhCCCCEEEEeeccEEEEEEecCcccchhhccccCHHHHHHHHHHHHHCCeEEeecCCCcEEEe--ccc
Confidence 9999999887 44566678899999999998511100 011234568888999999999875 578874 899
Q ss_pred CHHHHHHHHHhhhccccc
Q psy8199 630 NKNEIQHMTSAIFQTFNE 647 (965)
Q Consensus 630 t~~~i~~~~~~l~~~~~~ 647 (965)
++++++++++++.+.+.+
T Consensus 412 t~e~i~~~l~~l~~~l~~ 429 (434)
T 3l44_A 412 TKEDIEYTIEAVGRAFAA 429 (434)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 999999999998876543
|
| >1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-49 Score=460.48 Aligned_cols=378 Identities=22% Similarity=0.317 Sum_probs=299.9
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhc--cccccC--CCCcHHHHHHHHHHHhhcCCCCCeEEEcC
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKL--EHVMLS--NLTHKPVIKLSEKLSSLTQYKLGHCFYGS 321 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~--~~~~~~--~~~~~~~~~la~~l~~~~~~~~~~v~~~~ 321 (965)
+||||.|||+||||.+|+|+++|||+||+|++|+.+|+... .+.+.. ....+...+++++|++.++.+.++|+|++
T Consensus 55 ~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~l~~~~~~~~~~v~f~~ 134 (472)
T 1ohv_A 55 NYLVDVDGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFINRPALGILPPENFVEKLRESLLSVAPKGMSQLITMA 134 (472)
T ss_dssp TEEEBTTSCEEEESSHHHHTCSSCBTCHHHHHHHHCGGGHHHHHCCCCTTTSCBTTHHHHHHHTGGGGCCTTCCEEEEES
T ss_pred CEEEeCCCCEEEECCCCHhhcccCCCCHHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHhCCCCcCEEEEeC
Confidence 89999999999999999999999999999999999987643 222111 12356677788878888876789999999
Q ss_pred ChhHHHHHHHHHHHHHHHh--cC----------------CCC--ceEEEEEcCCccCCccccccccCCcCccchhcccCC
Q psy8199 322 DGASAVEVALKMSFHYWYN--KG----------------FLN--KKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLN 381 (965)
Q Consensus 322 sGseA~~~Al~~a~~~~~~--~g----------------~~~--~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~ 381 (965)
||+|||+.|+|+++.|++. +| .++ +++||+++++|||++.+++++++...++....+. .
T Consensus 135 sGseA~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~yHg~~~~~~~~~g~~~~~~~~~~~-~ 213 (472)
T 1ohv_A 135 CGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPS-F 213 (472)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHHCCSCHHHHTTSCC-C
T ss_pred CchhHHHHHHHHHHHHhhhhccCcccccccccccccccccccCCCCeEEEECCCcccccHHHHhcCCCccccccCCCC-C
Confidence 9999999999999987642 22 134 5899999999999999999998854432222222 2
Q ss_pred CeeEecCCCCCCCCCCCC--h-hHHHHHHHHHHHHHHHhCCC---cEEEEEEccccccCCCcccCChHHHHHHHHHHHhc
Q psy8199 382 KTYIITTPDSRNINKGNS--A-NEIARCAIFDLEILLKKNHN---KIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNY 455 (965)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~--~-~~~~~~d~~~le~~l~~~~~---~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~ 455 (965)
++.+++.|...... ... . +.+...|+++|+++|+++.+ ++++|++|| +++++|.++|+++|+++|+++|++|
T Consensus 214 ~~~~~~~p~~~~~~-~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~vive~-v~~~~G~~~~~~~~l~~l~~l~~~~ 291 (472)
T 1ohv_A 214 DWPIAPFPRLKYPL-EEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEP-IQSEGGDNHASDDFFRKLRDISRKH 291 (472)
T ss_dssp CCCEECCCCCCSSG-GGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECS-SBCTTTCBCCCHHHHHHHHHHHHHT
T ss_pred CCcccCCCcccCcc-ccccccchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEcC-CcCCCCCCCCCHHHHHHHHHHHHHh
Confidence 33445554321110 000 0 12334589999999975322 799999999 9999999999999999999999999
Q ss_pred CCeEEEeccccCCCcccccccccccCCC--cceeeeccc-cCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCH
Q psy8199 456 NIHLIADEIAVGCGRTGKFFACEHAEIW--PDFLCLSKG-ITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNP 532 (965)
Q Consensus 456 g~llI~DEv~tg~gr~G~~~~~~~~~~~--pDivt~sK~-l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~ 532 (965)
|++||+||||+||||+|.+++++++|+. ||++||||+ ++||+ + + ++++. .+ ..+.+++||++||
T Consensus 292 g~lli~DEv~~g~g~~g~~~~~~~~gv~~~~Di~t~sK~~l~GG~-~----~-~~~~~-~~------~~~~~~~T~~~~~ 358 (472)
T 1ohv_A 292 GCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVMTFSKKMMTGGF-F----H-KEEFR-PN------APYRIFNTWLGDP 358 (472)
T ss_dssp TCEEEEECTTTTTTTTSSSSGGGGGCCSSCCSEEEECGGGSSEEE-E----E-CGGGS-CS------SSSSSCCSSSSCH
T ss_pred CCEEEEeCcccCCCCCCCchhccccCCCCCCCEEEEccccccCCc-c----C-chhhc-cc------ccccccCccCccH
Confidence 9999999999999999998899999987 999999999 78763 3 2 55542 11 2346789999999
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcc-cCCCc-eeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHc
Q psy8199 533 LACCAALATLEIFNKDNILQRISQDMKKITKALTSL-ITHPK-IINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKN 610 (965)
Q Consensus 533 ~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l-~~~~~-i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~ 610 (965)
++|++++++|+.+.++++.+++++++++|+++|+++ .++|. +..+++.|+|+++++. + ......+.+.|+++
T Consensus 359 ~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~v~~~~~~g~~~~~~~~--~----~~~~~~~~~~l~~~ 432 (472)
T 1ohv_A 359 SKNLLLAEVINIIKREDLLSNAAHAGKVLLTGLLDLQARYPQFISRVRGRGTFCSFDTP--D----ESIRNKLISIARNK 432 (472)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTTCEEEEEETTEEEEECS--S----HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEeecCCceEEEEEeC--C----hhHHHHHHHHHHHC
Confidence 999999999999887889999999999999999887 45673 7788999999998764 2 12245688889999
Q ss_pred CcEEeecC-CEEEEeCCcccCHHHHHHHHHhhhccc
Q psy8199 611 ELLLRPIG-NTVYLMPPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 611 Gi~~~~~~-~~lR~~p~~~~t~~~i~~~~~~l~~~~ 645 (965)
||++.|.+ +++||+||+.+++++++++++++.+.+
T Consensus 433 Gv~~~~~g~~~iRi~~~~~~t~e~i~~~~~~l~~~l 468 (472)
T 1ohv_A 433 GVMLGGCGDKSIRFRPTLVFRDHHAHLFLNIFSDIL 468 (472)
T ss_dssp TEECEEETTTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred CeEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 99999875 799999999999999999999987654
|
| >2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-53 Score=480.93 Aligned_cols=362 Identities=19% Similarity=0.252 Sum_probs=302.9
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhH
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGAS 325 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGse 325 (965)
+||||.|||+||||.+++|+++|||+||+|++|+.+|++++.. .+++++...+|+++|++++| +.++|+|++||+|
T Consensus 92 ~~l~D~dG~~yiD~~~~~~~~~lGh~~p~V~~Av~~q~~~~~~---~~~~~~~~~~Lae~L~~~~p-~~~~v~~~nSGse 167 (465)
T 2yky_A 92 SRFQDVDGHAYVNFLGEYTAGLFGHSHPVIRAAVERALAVGLN---LSTQTENEALFAEAVCDRFP-SIDLVRFTNSGTE 167 (465)
Confidence 8999999999999999999999999999999999999988422 35688999999999999997 7899999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHH
Q psy8199 326 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIAR 405 (965)
Q Consensus 326 A~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (965)
|++.|++++|.+ +++++||+++++|||++.+++ ++ +. .. ..... .++ +.+
T Consensus 168 A~~~Aik~ar~~------tgr~~ii~~~~~yHG~~~~~~--sg-~~-~~---g~~~~--~~~---------------~~~ 217 (465)
T 2yky_A 168 ANLMALATATAI------TGRKTVLAFDGGYHGGLLNFA--SG-HA-PT---NAPYH--VVL---------------GVY 217 (465)
Confidence 999999999876 588999999999999998877 32 10 00 00001 111 223
Q ss_pred HHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcc
Q psy8199 406 CAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPD 485 (965)
Q Consensus 406 ~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pD 485 (965)
+|+++|+++++++++++++|++|| +++++|.++++++|+++|+++|++||++||+||||+ | |+|.+++++++|+.||
T Consensus 218 ~d~~~l~~~l~~~~~~~aavi~ep-v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-~-r~g~~~a~~~~gv~pD 294 (465)
T 2yky_A 218 NDVEGTADLLKRHGHDCAAILVEP-MLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMT-S-RLSGGGAQEMLGISAD 294 (465)
Confidence 789999999976556899999999 899999999999999999999999999999999999 6 9999999999999999
Q ss_pred eeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Q psy8199 486 FLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKAL 565 (965)
Q Consensus 486 ivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L 565 (965)
++||||+++|| +|+|++++++++++.+... ..+++.+++||++||++|++++++|+.++++++.+++++++++++++|
T Consensus 295 i~t~sK~lg~G-~piG~v~~~~~i~~~l~~~-~~g~~~~~~T~~~npla~aAa~aaL~~l~~~~~~~~~~~~~~~l~~~L 372 (465)
T 2yky_A 295 LTTLGKYIGGG-MSFGAFGGRRDLMERFDPA-RDGAFAHAGTFNNNILTMSAGHAALTQIYTRQAASDLSASGDRFRANL 372 (465)
Confidence 99999999998 7999999999999988641 112346789999999999999999999988889999999999999999
Q ss_pred Hcc-cCCCceeeeeceeEEEEEEEeecCc----c---chhhHHHHHHHHHHHcCcEEeecCCEEEEeCCcccCHHHHHHH
Q psy8199 566 TSL-ITHPKIINFRQKGMIWAFDVIIEDP----E---QIETFSKKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHM 637 (965)
Q Consensus 566 ~~l-~~~~~i~~v~g~G~~~~i~~~~~~~----~---~~~~~~~~~~~~l~~~Gi~~~~~~~~lR~~p~~~~t~~~i~~~ 637 (965)
+++ .+++.+..+++.|+|+++++...+. . ........+.+.|+++||++.|.+... ||+++++++++++
T Consensus 373 ~~~~~~~~~~~~v~g~G~~~~i~~~~~~~~~~~~~~~~d~~~~~~~~~~ll~~GV~v~p~~~~~---~s~~~t~edid~~ 449 (465)
T 2yky_A 373 NRIAVENQAPLQFTGLGSLGTIHFSRAPIRSAGDVRAADQQLKELFFFHMLRKGIYLAPRGMYA---LSLEIADAGRDAF 449 (465)
Confidence 887 4566556899999999998861010 0 011224468889999999999865222 8899999999999
Q ss_pred HHhhhcccccHH
Q psy8199 638 TSAIFQTFNELD 649 (965)
Q Consensus 638 ~~~l~~~~~~~~ 649 (965)
++++.+++.++.
T Consensus 450 l~~l~~~l~~~~ 461 (465)
T 2yky_A 450 AEALADFIGEQR 461 (465)
Confidence 999987765543
|
| >3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-48 Score=442.55 Aligned_cols=362 Identities=30% Similarity=0.496 Sum_probs=320.3
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhH
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGAS 325 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGse 325 (965)
+|+||.||++||||.+++++++|||+||+|.+|+.+++++..+.. ..++++...++++++++.++ .++++|++||+|
T Consensus 28 ~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~la~~~~--~~~v~~~~gg~e 104 (395)
T 3nx3_A 28 VYLFDDKAKKYLDFSSGIGVCALGYNHAKFNAKIKAQVDKLLHTS-NLYYNENIAAAAKNLAKASA--LERVFFTNSGTE 104 (395)
T ss_dssp TEEEETTCCEEEESSHHHHTCTTCBSCHHHHHHHHHHHTTCSCCC-TTSBCHHHHHHHHHHHHHHT--CSEEEEESSHHH
T ss_pred eEEEECCCCEEEECCCcHHhccCCCCCHHHHHHHHHHHHhccccc-cccCCHHHHHHHHHHHHhcC--CCeEEEeCCHHH
Confidence 899999999999999999999999999999999999998865543 45678999999999999985 689999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHH
Q psy8199 326 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIAR 405 (965)
Q Consensus 326 A~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (965)
|++.|+++++.++..+| +++++||+++++|||++..++++++.+.++..+.+...++.++|.
T Consensus 105 a~~~al~~~~~~~~~~g-~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 166 (395)
T 3nx3_A 105 SIEGAMKTARKYAFNKG-VKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFAKY----------------- 166 (395)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTCEEEEETTCCCCSSHHHHTTCCCHHHHGGGCSCCSCEEEECT-----------------
T ss_pred HHHHHHHHHHHHhhccC-CCCCEEEEEcCCcCCCCHHHHhhcCCcccccccCCCCCCcEEeCC-----------------
Confidence 99999999988766666 578899999999999999999999877777667776667777765
Q ss_pred HHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcc
Q psy8199 406 CAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPD 485 (965)
Q Consensus 406 ~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pD 485 (965)
+|+++|+++++ +++++|++|| +++++|.++++++++++|+++|++||+++|+||||+|||++|.+++++++++.||
T Consensus 167 ~d~~~l~~~l~---~~~~~v~~~~-~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~~~~~~~~~~~d 242 (395)
T 3nx3_A 167 NDISSVEKLVN---EKTCAIILES-VQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSGKFFAYEHAQILPD 242 (395)
T ss_dssp TCHHHHHTTCC---TTEEEEEEES-EECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCS
T ss_pred CCHHHHHHhcc---CCeEEEEEeC-ccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCCcCCcchhHHhcCCCCC
Confidence 36788888774 5789999999 9999999999999999999999999999999999999999999888999999999
Q ss_pred eeeeccccCCCcccceeeeecHHH-HHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Q psy8199 486 FLCLSKGITGGYLPLSLVMTTDKI-YNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKA 564 (965)
Q Consensus 486 ivt~sK~l~gG~~pig~v~~~~~i-~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~ 564 (965)
++||||++++| +|+|++++++++ ++.+.. ..+++|+++||+++++++++|+.++++++.++++++++++++.
T Consensus 243 ~~t~sK~~~~G-~~~G~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~aa~aal~~~~~~~~~~~~~~~~~~~~~~ 315 (395)
T 3nx3_A 243 IMTSAKALGCG-LSVGAFVINQKVASNSLEA------GDHGSTYGGNPLVCAGVNAVFEIFKEEKILENVNKLTPYLEQS 315 (395)
T ss_dssp EEEECGGGTTT-SCCEEEEECHHHHHHHSCT------TCCSSCBSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred EEEecccccCC-CceEEEEEchhhhhhhcCC------cccCCCCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 99999999988 799999999999 777754 3578999999999999999999887788999999999999999
Q ss_pred HHcc-cCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecC-CEEEEeCCcccCHHHHHHHHHhhh
Q psy8199 565 LTSL-ITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG-NTVYLMPPYILNKNEIQHMTSAIF 642 (965)
Q Consensus 565 L~~l-~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~-~~lR~~p~~~~t~~~i~~~~~~l~ 642 (965)
|+++ .++|.+..+++.|+|+.+++. .. .....+.+.|.++||++++.+ +++||+|++.+++++++++++++.
T Consensus 316 l~~~~~~~~~~~~~~~~g~~~~~~~~-~~-----~~~~~~~~~l~~~Gi~v~~~~~~~iRi~~~~~~t~e~i~~~l~~l~ 389 (395)
T 3nx3_A 316 LDELINEFDFCKKRKGLGFMQGLSLD-KS-----VKVAKVIQKCQENALLLISCGENDLRFLPPLILQKEHIDEMSEKLR 389 (395)
T ss_dssp HHHHHHHCTTEEEEEEETTEEEEEEC-TT-----SCHHHHHHHHHHTTEECEEETTTEEEECCCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHhCCCeEEEEeEEEEEEEEeC-Cc-----chHHHHHHHHHHCCCEEecCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 9886 557778889999999999886 21 124567888999999999874 799999999999999999999987
Q ss_pred ccc
Q psy8199 643 QTF 645 (965)
Q Consensus 643 ~~~ 645 (965)
+.+
T Consensus 390 ~~l 392 (395)
T 3nx3_A 390 KAL 392 (395)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
|
| >3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-49 Score=451.39 Aligned_cols=368 Identities=20% Similarity=0.267 Sum_probs=307.5
Q ss_pred CCCce-----eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCC
Q psy8199 241 LPDDI-----SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLG 315 (965)
Q Consensus 241 ~p~~~-----~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~ 315 (965)
.|+++ +|+||.|||+||||.+++|+++|||+||+|++|+.+|++++.+ .+++++...+|++++++.++ +.+
T Consensus 35 ~p~~~~~~~G~~~~d~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~---~~~~~~~~~~l~~~la~~~~-~~~ 110 (429)
T 3k28_A 35 NPLFMERGKGSKVYDIDGNEYIDYVLSWGPLIHGHANDRVVEALKAVAERGTS---FGAPTEIENKLAKLVIERVP-SIE 110 (429)
T ss_dssp CCCCEEEEEBTEEEETTCCEEEESCGGGTTCTTCBSCHHHHHHHHHHHHHCSC---CSSCCHHHHHHHHHHHHHST-TCS
T ss_pred CCceEEEeecCEEEECCCCEEEECCCChhhcccCCCCHHHHHHHHHHHhhCcC---cCCCCHHHHHHHHHHHHhCC-CCC
Confidence 45555 9999999999999999999999999999999999999988633 35778999999999999987 789
Q ss_pred eEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhc--c-----cCCCeeEecC
Q psy8199 316 HCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYT--S-----LLNKTYIITT 388 (965)
Q Consensus 316 ~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~--~-----~~~~~~~~~~ 388 (965)
+++|++||+||++.|+++++.+ +++++||+++++|||++..++..++......... + .......+|.
T Consensus 111 ~v~~~~~Gsea~~~ai~~a~~~------~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (429)
T 3k28_A 111 IVRMVNSGTEATMSALRLARGY------TGRNKILKFIGCYHGHGDSLLIKAGSGVATLGLPDSPGVPEGVAKNTITVAY 184 (429)
T ss_dssp EEEEESSHHHHHHHHHHHHHHH------HTCCEEEEEETCCCCSCGGGCSSCCTTC-----CCCTTCCHHHHTTEEEEET
T ss_pred EEEEeCChHHHHHHHHHHHHHh------hCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCcCCCCCcccCceeecCC
Confidence 9999999999999999999887 4788999999999999999888776432111000 0 0012222222
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCC
Q psy8199 389 PDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGC 468 (965)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~ 468 (965)
+|+++|+++++++++++++|++|| +++++|.+.++++|+++|+++|++||++||+||||+||
T Consensus 185 -----------------~d~~~le~~l~~~~~~~~~vi~ep-~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~ 246 (429)
T 3k28_A 185 -----------------NDLESVKYAFEQFGDDIACVIVEP-VAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGF 246 (429)
T ss_dssp -----------------TCHHHHHHHHHHHGGGEEEEEECS-SBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTT
T ss_pred -----------------CCHHHHHHHHHhCCCCEEEEEEcC-CCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccccc
Confidence 478999999976656899999999 99999999999999999999999999999999999999
Q ss_pred CcccccccccccCCCcceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcc
Q psy8199 469 GRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKD 548 (965)
Q Consensus 469 gr~G~~~~~~~~~~~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~ 548 (965)
|+|.+++++++++.||++||||++++| +|+|++++++++++.+.. ...+.+++||++||++|++++++|+.++ +
T Consensus 247 -~~g~~~~~~~~~~~~di~t~sK~~~~G-~~iG~~~~~~~~~~~~~~---~~~~~~~~t~~~~~~a~aaa~aal~~~~-~ 320 (429)
T 3k28_A 247 -RVAYNCGQGYYGVTPDLTCLGKVIGGG-LPVGAYGGKAEIMRQVAP---SGPIYQAGTLSGNPLAMAAGYETLVQLT-P 320 (429)
T ss_dssp -TSSTTHHHHHHTCCCSEEEECGGGGTT-SCCEEEEECHHHHTTBTT---TSSBCCCCTTTTCHHHHHHHHHHHHTCC-H
T ss_pred -ccCcchHHHHhCCCCceehhhhhhcCC-CCeEEEEEcHHHHhhhcc---CCCccccCCCCCChHHHHHHHHHHHHHH-H
Confidence 999988899999999999999999887 899999999999988754 1235688999999999999999999876 6
Q ss_pred cHHHHHHHHHHHHHHHHHcc-cCCCceeeeeceeEEEEEEEeecCcc--------chhhHHHHHHHHHHHcCcEEeecC-
Q psy8199 549 NILQRISQDMKKITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDPE--------QIETFSKKFFVAALKNELLLRPIG- 618 (965)
Q Consensus 549 ~~~~~~~~~~~~l~~~L~~l-~~~~~i~~v~g~G~~~~i~~~~~~~~--------~~~~~~~~~~~~l~~~Gi~~~~~~- 618 (965)
++.++++++++++++.|+++ ..++.+..+++.|+|+++++. .+.. +.......+.+.|+++||+++|.+
T Consensus 321 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~ 399 (429)
T 3k28_A 321 ESYVEFERKAEMLEAGLRKAAEKHGIPHHINRAGSMIGIFFT-DEPVINYDAAKSSNLQFFAAYYREMVEQGVFLPPSQF 399 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEESS-SSCCCSHHHHTTSCHHHHHHHHHHHHHTTEECCSSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEeeccEEEEEEe-cCCcccccccccccHHHHHHHHHHHHHCCeEEecCCC
Confidence 78999999999999999887 556777789999999999875 2110 112234568888999999999864
Q ss_pred CEEEEeCCcccCHHHHHHHHHhhhccc
Q psy8199 619 NTVYLMPPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 619 ~~lR~~p~~~~t~~~i~~~~~~l~~~~ 645 (965)
+.+|++ +.+++++++++++++.+.+
T Consensus 400 ~~~r~~--~~~t~e~i~~~l~~l~~~l 424 (429)
T 3k28_A 400 EGLFLS--TVHSDADIEATIAAAEIAM 424 (429)
T ss_dssp SCBCCC--TTCCHHHHHHHHHHHHHHH
T ss_pred CCEEEE--CCCCHHHHHHHHHHHHHHH
Confidence 567774 8999999999999987654
|
| >3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-48 Score=448.34 Aligned_cols=379 Identities=24% Similarity=0.407 Sum_probs=317.4
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCC-CeEEEcCChh
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKL-GHCFYGSDGA 324 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~-~~v~~~~sGs 324 (965)
+|+||.||++|||+.+++++++|||+||+|.+|+.+++++..+++...++++...+++++|++.++.+. ++++|++||+
T Consensus 35 ~~v~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~ggs 114 (439)
T 3dxv_A 35 ARLIEENGRELIDLSGAWGAASLGYGHPAIVAAVSAAAANPAGATILSASNAPAVTLAERLLASFPGEGTHKIWFGHSGS 114 (439)
T ss_dssp TEEEETTSCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHSCSCSCSSSSEEHHHHHHHHHHHHTTTCTTTEEEEEESSHH
T ss_pred CEEEeCCCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCCCCCEEEEeCCHH
Confidence 899999999999999999999999999999999999998876665567889999999999999997677 7999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcC--ccchhcccCCCeeEecCCCCCCCCCCCChhH
Q psy8199 325 SAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQS--FKEIYTSLLNKTYIITTPDSRNINKGNSANE 402 (965)
Q Consensus 325 eA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (965)
+|++.|+++++.+ +++++||+++++|||++..++.+++... ++..+.+..+++.++|.+...... ..
T Consensus 115 ea~~~al~~~~~~------~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-- 183 (439)
T 3dxv_A 115 DANEAAYRAIVKA------TGRSGVIAFAGAYHGCTVGSMAFSGHSVQADAAKADGLILLPYPDPYRPYRNDP---TG-- 183 (439)
T ss_dssp HHHHHHHHHHHHH------HSCCEEEEETTCCCCSSHHHHCC-------------CEEEECCCCSSSCBTTBT---TS--
T ss_pred HHHHHHHHHHHHH------hCCCEEEEECCCCCCCcHHHHhhcCCCchhhccccCCCCCCcEEcCCCcccccc---cH--
Confidence 9999999998876 3778999999999999999999888655 666666666666666665432211 01
Q ss_pred HHHHHHHHHHHHHH-hCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccC
Q psy8199 403 IARCAIFDLEILLK-KNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAE 481 (965)
Q Consensus 403 ~~~~d~~~le~~l~-~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~ 481 (965)
..|+++|+++++ ...+++++|++|| +++++|.+.++++|+++|+++|++||++||+||+|+||||+|.++++++++
T Consensus 184 --~~d~~~le~~l~~~~~~~~~~vi~~p-~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~g~g~~g~~~~~~~~~ 260 (439)
T 3dxv_A 184 --DAILTLLTEKLAAVPAGSIGAAFIEP-IQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGRLHCFEHEG 260 (439)
T ss_dssp --HHHHHHHHHHHHTSCTTCEEEEEECS-SBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTCTTTTSSSSGGGGTT
T ss_pred --HHHHHHHHHHHHhcCCCCEEEEEEcc-ccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhHHHhcC
Confidence 128999999994 3356799999999 999999999999999999999999999999999999999999988899999
Q ss_pred CCcceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q psy8199 482 IWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKI 561 (965)
Q Consensus 482 ~~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l 561 (965)
+.||++||||++++| +|+|++++++++++.+.. ..+++|+ +||+++++++++|+.++++++.++++++++++
T Consensus 261 ~~~di~s~sK~~~~G-~riG~~~~~~~~~~~~~~------~~~~~t~-~~~~~~~aa~aal~~~~~~~~~~~~~~~~~~~ 332 (439)
T 3dxv_A 261 FVPDILVLGKGLGGG-LPLSAVIAPAEILDCASA------FAMQTLH-GNPISAAAGLAVLETIDRDDLPAMAERKGRLL 332 (439)
T ss_dssp CCCSEEEECGGGGTT-SCCEEEEEEHHHHTSCSS------SSCCTTT-TCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred CCCCEEEEcchhcCC-cceEEEEECHHHHhhhcC------CCcCCCc-ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999999999999988 699999999999988765 3578899 99999999999999888788999999999999
Q ss_pred HHHHHcc-cCCCceeeeeceeEEEEEEEeecCc--cchhhHHHHHHHHHHHcCcEEeecC---CEEEEeCCcccCHHHHH
Q psy8199 562 TKALTSL-ITHPKIINFRQKGMIWAFDVIIEDP--EQIETFSKKFFVAALKNELLLRPIG---NTVYLMPPYILNKNEIQ 635 (965)
Q Consensus 562 ~~~L~~l-~~~~~i~~v~g~G~~~~i~~~~~~~--~~~~~~~~~~~~~l~~~Gi~~~~~~---~~lR~~p~~~~t~~~i~ 635 (965)
++.|+++ ..++.+..+++.|+|+++++..... .+.......+.+.|+++||++.+.+ +++||+|++.+++++++
T Consensus 333 ~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~~~~~~t~e~i~ 412 (439)
T 3dxv_A 333 RDGLSELAKRHPLIGDIRGRGLACGMELVCDRQSREPARAETAKLIYRAYQLGLVVYYVGMNGNVLEFTPPLTITETDIH 412 (439)
T ss_dssp HHHHHHHHHHCTTEEEEEEETTEEEEEEEEETTTTEECHHHHHHHHHHHHHHTEECEEESTTSCEEEECCCTTCCHHHHH
T ss_pred HHHHHHHHHhCCCeEEEEEEEEEEEEEEecCccccCCCHHHHHHHHHHHHHCCcEEeecCCCCCEEEEECCCCCCHHHHH
Confidence 9999887 4677788899999999998851110 0112235568888999999999875 79999999999999999
Q ss_pred HHHHhhhcccc
Q psy8199 636 HMTSAIFQTFN 646 (965)
Q Consensus 636 ~~~~~l~~~~~ 646 (965)
++++++.+.+.
T Consensus 413 ~~l~~l~~~l~ 423 (439)
T 3dxv_A 413 KALDLLDRAFS 423 (439)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999876554
|
| >1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-47 Score=439.72 Aligned_cols=403 Identities=36% Similarity=0.650 Sum_probs=328.5
Q ss_pred cccccccCcccccccccCCCc-e-----eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcH
Q psy8199 224 LGLIHPKNNLKLKWRINLPDD-I-----SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHK 297 (965)
Q Consensus 224 l~f~~p~~~~~~~~~~~~p~~-~-----~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~ 297 (965)
-.+|||++....+ .|+. + +|+||.+|++|||+.++.|++++||.+|+|++|+.++++...+++..+++++
T Consensus 11 ~~~~~~~~~~~~~----~~~~~~~~~~g~~~~d~~g~~ylD~~~~~~~~~lg~~~p~v~~a~~~~~~~~~~~~~~~~~~~ 86 (429)
T 1s0a_A 11 RHILHPFTSMTSP----LPVYPVVSAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHA 86 (429)
T ss_dssp HHBCCTTCCSSSC----CCCEEEEEEEBTEEEETTSCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHHCSCCCCSSEECH
T ss_pred Hhhcccccccccc----CCceeEEeeeeeEEEeCCCCEEEEcCccHhhccCCCCCHHHHHHHHHHHHhcccccccccCCH
Confidence 3457776654322 3544 3 8999999999999999999999999999999999999987644333456788
Q ss_pred HHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcC-ccchh
Q psy8199 298 PVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQS-FKEIY 376 (965)
Q Consensus 298 ~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~-~~~~~ 376 (965)
...+++++++++++.+.++|+|++||+||++.|+++++.++..+|++ +++||+++++|||++..++.+++... ++..+
T Consensus 87 ~~~~l~~~la~~~~~~~~~v~~~~ggtea~~~ai~~~~~~~~~~g~~-~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~ 165 (429)
T 1s0a_A 87 PAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEA-RQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLW 165 (429)
T ss_dssp HHHHHHHHHHHHSCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHTCC-CCEEEEETTCCCCSSHHHHTTSCTTTTTGGGG
T ss_pred HHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHHHhcccCCC-CCeEEEECCCCCCCchhhhhhcCCchhhcccc
Confidence 88999999999998778999999999999999999987765444433 67899999999999988887776433 44445
Q ss_pred cccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEcccc-ccCCCcccCChHHHHHHHHHHHhc
Q psy8199 377 TSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLV-QCAGGMIMYDSIYLKLVREICNNY 455 (965)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v-~~~~G~~~~~~~~l~~l~~l~~~~ 455 (965)
.+...++..++.|..... ..+...|+++|+++++++.+++++|++|| + +|++|.++++++++++|+++|++|
T Consensus 166 ~~~~~~~~~~~~~~~~~~------~~~~~~d~~~l~~~l~~~~~~~~~vi~~p-~~~n~tG~~~~~~~~l~~i~~l~~~~ 238 (429)
T 1s0a_A 166 KGYLPENLFAPAPQSRMD------GEWDERDMVGFARLMAAHRHEIAAVIIEP-IVQGAGGMRMYHPEWLKRIRKICDRE 238 (429)
T ss_dssp TTTSCCCEEECCCCSBC-------CCCCGGGGHHHHHHHHHHTTTEEEEEECS-SEECTTTCEEBCTHHHHHHHHHHHHH
T ss_pred cCCCCCceEeCCCccccc------ccchHHHHHHHHHHHHhCCCCEEEEEEee-cccCCCCcccCCHHHHHHHHHHHHHc
Confidence 555556677776532100 00112578899998875445789999999 8 899999999999999999999999
Q ss_pred CCeEEEeccccCCCcccccccccccCCCcceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHH
Q psy8199 456 NIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLAC 535 (965)
Q Consensus 456 g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~ 535 (965)
|+++|+||+|+|||++|.+++++++++.||++||||+++|||+|+|++++++++++.+... ..+.+.+++|+++|++++
T Consensus 239 ~~~li~De~~~~~g~~g~~~~~~~~~~~~d~~t~sK~l~~G~~~iG~~~~~~~~~~~l~~~-~~~~~~~~~t~~~n~~~~ 317 (429)
T 1s0a_A 239 GILLIADEIATGFGRTGKLFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNG-EAGCFMHGPTFMGNPLAC 317 (429)
T ss_dssp TCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTSSSCCEEEEECHHHHHHHHTS-TTSSCSCCCTTTTCHHHH
T ss_pred CCEEEEeehhhCCcccchHHHhhhcCCCCCEEEecccccCCCccceEEEeCHHHHHHhhcC-CCcccccCCCCCCCHHHH
Confidence 9999999999999999987788888999999999999998868999999999998888652 122344678999999999
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEe
Q psy8199 536 CAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLR 615 (965)
Q Consensus 536 aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~ 615 (965)
+++.++|+.++++++.++++++++++.++|+++...|.+..+++.|+|+.+++. .. .....+.+.|.++||++.
T Consensus 318 ~a~~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~~~~~-~~-----~~~~~l~~~l~~~Gi~v~ 391 (429)
T 1s0a_A 318 AAANASLAILESGDWQQQVADIEVQLREQLAPARDAEMVADVRVLGAIGVVETT-HP-----VNMAALQKFFVEQGVWIR 391 (429)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHGGGGGCTTEEEEEEETTEEEEEES-SC-----BCHHHHHHHHHHTTEECC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhcCCCEEEEEEeeEEEEEEEC-Cc-----ccHHHHHHHHHHCCCEEe
Confidence 999999998877788999999999999999887556777778889999888875 11 013457788889999999
Q ss_pred ecCCEEEEeCCcccCHHHHHHHHHhhhccc
Q psy8199 616 PIGNTVYLMPPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 616 ~~~~~lR~~p~~~~t~~~i~~~~~~l~~~~ 645 (965)
+.++++||+|++.+++++++++++++.+.+
T Consensus 392 ~~~~~iRis~~~~~t~e~i~~~~~~l~~~~ 421 (429)
T 1s0a_A 392 PFGKLIYLMPPYIILPQQLQRLTAAVNRAV 421 (429)
T ss_dssp CBTTEEEECCCTTCCHHHHHHHHHHHHHHT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 988899999999999999999999987654
|
| >2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-48 Score=448.71 Aligned_cols=382 Identities=21% Similarity=0.331 Sum_probs=315.6
Q ss_pred eEEEe-cCCcccccccccchhccCCCCCHHHH-H-HHHH---HHhhccccccCCCCcHHHHHHHHHHHhhcC-CCCCeEE
Q psy8199 246 SKLIT-FSGKRYLDAISSWWVNLFGHSNSYIN-K-ALKN---QLNKLEHVMLSNLTHKPVIKLSEKLSSLTQ-YKLGHCF 318 (965)
Q Consensus 246 ~~~~d-~dG~~ylD~~~~~~~~~lGh~~p~v~-~-av~~---~~~~~~~~~~~~~~~~~~~~la~~l~~~~~-~~~~~v~ 318 (965)
+|+|| .||++|||+.+++|+++|||+||+|+ + |+.+ +++.+.+++ +.+.++...+++++|+++++ .+.++|+
T Consensus 45 ~~~~d~~~g~~ylD~~~~~~~~~lG~~~p~v~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~la~~la~~~~~~~~~~v~ 123 (449)
T 2cjg_A 45 SYLVDAITGRRYLDMFTFVASSALGMNPPALVDDREFHAELMQAALNKPSN-SDVYSVAMARFVETFARVLGDPALPHLF 123 (449)
T ss_dssp TEEEBTTTCCEEEESSHHHHTCSSCBSCHHHHTCHHHHHHHHHHHTCCCCT-TTCCCHHHHHHHHHHHHHHCCTTCCEEE
T ss_pred CEEEECCCCcEEEEccCCccccCCCCCCHHHHHHHHHHHHHHHHHhcCCCC-cccCCHHHHHHHHHHHHhcCCCCCCEEE
Confidence 89999 99999999999999999999999999 9 9999 888765544 45788889999999999986 4678999
Q ss_pred EcCChhHHHHHHHHHHHHHHHhc----C--CCCceEEEEEcCCccCCccccccccCC-cCccchhcccCCCeeEecCCC-
Q psy8199 319 YGSDGASAVEVALKMSFHYWYNK----G--FLNKKKFICLQNSYHGETLGALAVTNI-QSFKEIYTSLLNKTYIITTPD- 390 (965)
Q Consensus 319 ~~~sGseA~~~Al~~a~~~~~~~----g--~~~~~~vi~~~~~yHg~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~- 390 (965)
|++||+||++.|+++++.++..+ | .+++++||+++++|||++.+++++++. +.++..+.++..++.++|.++
T Consensus 124 ~~~~gseA~~~aik~a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 203 (449)
T 2cjg_A 124 FVEGGALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPYMRP 203 (449)
T ss_dssp EESSHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTGGGTCCSCHHHHTTSCCCCCCEECCCCCCT
T ss_pred EeCchHHHHHHHHHHHHHHhcccccccccccCCCCEEEEECCCcCCcccchhhhcCCchhhcccCCCCCCCcEEEcCCCc
Confidence 99999999999999998775321 1 123789999999999999999998885 334445555555666666543
Q ss_pred -CCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCC
Q psy8199 391 -SRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCG 469 (965)
Q Consensus 391 -~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~g 469 (965)
...+ ........|+++|+++++++.+++++|++|| ++|++|.++++++|+++|+++|++||++||+||||+|||
T Consensus 204 ~~~~~----~~~~~~~~~~~~le~~i~~~~~~~~~vi~ep-~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g 278 (449)
T 2cjg_A 204 GLDEP----AMAALEAEALRQARAAFETRPHDIACFVAEP-IQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCG 278 (449)
T ss_dssp TCCHH----HHHHHHHHHHHHHHHHHHHSTTTEEEEEECS-EETTTTCEECCHHHHHHHHHHHHHTTCEEEEECTTTTTT
T ss_pred hhhcc----ccchhhHHHHHHHHHHHHhcCCceEEEEEeC-cCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccccCCC
Confidence 1100 0011223578889999976556799999999 999999989999999999999999999999999999999
Q ss_pred cccccccccccCCCcceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhccc
Q psy8199 470 RTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDN 549 (965)
Q Consensus 470 r~G~~~~~~~~~~~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~ 549 (965)
|+|.+++++++++.||++||||++ |+|++++++++++.+... ......+++||++||++++++.++|+.+.+++
T Consensus 279 ~~g~~~~~~~~~~~~di~t~sK~l-----~iG~~~~~~~~~~~l~~~-~~~~~~~~~t~~~n~~~~~aa~aal~~~~~~~ 352 (449)
T 2cjg_A 279 LTGTAWAYQQLDVAPDIVAFGKKT-----QVCGVMAGRRVDEVADNV-FAVPSRLNSTWGGNLTDMVRARRILEVIEAEG 352 (449)
T ss_dssp TTSSSSTHHHHTCCCSEEEECGGG-----SSEEEEECGGGGGSTTCT-TTSTTSSCCSSSSCHHHHHHHHHHHHHHHHHT
T ss_pred ccCcceeecccCCCceEEEecCcc-----cEEEEEECHHHhhhhhhc-ccCCcccccCCCCCHHHHHHHHHHHHHHHhcc
Confidence 999988888899999999999988 899999999988763210 00113577899999999999999999887778
Q ss_pred HHHHHHHHHHHHHHHHHcc-cCCCc-eeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecC-CEEEEeCC
Q psy8199 550 ILQRISQDMKKITKALTSL-ITHPK-IINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG-NTVYLMPP 626 (965)
Q Consensus 550 ~~~~~~~~~~~l~~~L~~l-~~~~~-i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~-~~lR~~p~ 626 (965)
+.+++++++++++++|+++ ..++. +..+++.|+|+++++. + ......+.+.|+++||++.+.+ +++||+|+
T Consensus 353 ~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~~~g~~~~~~~~--~----~~~~~~~~~~l~~~Gv~v~~~g~~~iRi~~~ 426 (449)
T 2cjg_A 353 LFERAVQHGKYLRARLDELAADFPAVVLDPRGRGLMCAFSLP--T----TADRDELIRQLWQRAVIVLPAGADTVRFRPP 426 (449)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTTSEEEEEETTEEEEECS--S----HHHHHHHHHHHHHTTEECEEETTTEEEECCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCceeeEeeccEEEEEEEC--C----hHHHHHHHHHHHHCCeEEecCCCCEEEEECC
Confidence 9999999999999999887 45675 7788999999998774 2 1124568888999999999875 79999999
Q ss_pred cccCHHHHHHHHHhhhccc
Q psy8199 627 YILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 627 ~~~t~~~i~~~~~~l~~~~ 645 (965)
+.+++++++++++++.+++
T Consensus 427 ~~~t~e~i~~~l~~l~~~l 445 (449)
T 2cjg_A 427 LTVSTAEIDAAIAAVRSAL 445 (449)
T ss_dssp TTCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 9999999999999987654
|
| >4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-48 Score=445.06 Aligned_cols=370 Identities=21% Similarity=0.311 Sum_probs=296.7
Q ss_pred CCCce-----eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCC
Q psy8199 241 LPDDI-----SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLG 315 (965)
Q Consensus 241 ~p~~~-----~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~ 315 (965)
.|+++ +|+||.||++||||.+++++++|||+||+|++|+.+|++++.+ .+++++...+|++++++.++ +.+
T Consensus 35 ~p~~~~~~~G~~~~d~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~---~~~~~~~~~~la~~l~~~~~-~~~ 110 (429)
T 4e77_A 35 IPLFIERADGAYLFDVDGKAYIDYVGSWGPMILGHNHPAIRQAVIEAVERGLS---FGAPTEMEVKMAQLVTDLVP-TMD 110 (429)
T ss_dssp CCCCEEEEEBTEEEETTCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHTTCSC---CSSCCHHHHHHHHHHHHHST-TCS
T ss_pred CCceEEEeecCEEEECCCCEEEECCCchhccccCCCCHHHHHHHHHHHHhCcc---cCCCCHHHHHHHHHHHhhCC-CCC
Confidence 45555 9999999999999999999999999999999999999988633 34678999999999999998 789
Q ss_pred eEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccc-------hhcccCCCeeEecC
Q psy8199 316 HCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKE-------IYTSLLNKTYIITT 388 (965)
Q Consensus 316 ~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~ 388 (965)
+++|++||+||++.|+++++.+ +++++||+++++|||++..++..++...... ...........++
T Consensus 111 ~v~~~~sGsea~~~al~~a~~~------~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 183 (429)
T 4e77_A 111 MVRMVNSGTEATMSAIRLARGY------TGRDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNSPGVPTDFAKHTLTCT- 183 (429)
T ss_dssp EEEEESSHHHHHHHHHHHHHHH------HCCCEEEEETTCCCC------------------CCCTTSCGGGGTTEEEEC-
T ss_pred EEEEeCcHHHHHHHHHHHHHHh------hCCCEEEEEcCccCCCChhhhhhcCCcccccCCCCcCCCCCccCCceeecC-
Confidence 9999999999999999999887 4788999999999999987665544221110 0000111122222
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCC
Q psy8199 389 PDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGC 468 (965)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~ 468 (965)
++|+++|+++++++++++++|++|| +++++|.+.++++|+++|+++|++||++||+||||+||
T Consensus 184 ----------------~~d~~~le~~l~~~~~~~~~vi~ep-~~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~ 246 (429)
T 4e77_A 184 ----------------YNDLASVRQAFEQYPQEVACIIVEP-VAGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMTGF 246 (429)
T ss_dssp ----------------TTCHHHHHHHHHHSTTTEEEEEECS-SBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEETTTBT
T ss_pred ----------------CCCHHHHHHHHHhcCCCEEEEEECC-ccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCc
Confidence 2478999999987667899999999 99999999999999999999999999999999999999
Q ss_pred CcccccccccccCCCcceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcc
Q psy8199 469 GRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKD 548 (965)
Q Consensus 469 gr~G~~~~~~~~~~~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~ 548 (965)
|+|.+++++++++.||++||||++++| +|+|++++++++++.+... ....+++||++||+++++++++|+.++++
T Consensus 247 -r~g~~~~~~~~~~~pdi~t~sK~~~~G-~~~G~~~~~~~~~~~l~~~---~~~~~~~t~~~~~~~~aaa~aal~~~~~~ 321 (429)
T 4e77_A 247 -RVALAGAQDYYHVIPDLTCLGKIIGGG-MPVGAFGGRREVMNALAPT---GPVYQAGTLSGNPIAMAAGFACLTEISQV 321 (429)
T ss_dssp -TTBTTCHHHHTTCCCSEEEEEGGGGTT-SCCEEEEECHHHHTTBTTT---SSBCC--CCCCCHHHHHHHHHHHHHHTST
T ss_pred -ccCcchHHHhcCCCCCeeeecccccCC-CCeEEEEECHHHHHHhccC---CCccccCCCCCCHHHHHHHHHHHHHHHhc
Confidence 999988999999999999999999988 7999999999999888641 22457899999999999999999999888
Q ss_pred cHHHHHHHHHHHHHHHHHcc-cCCCceeeeeceeEEEEEEEeecCccc--------hhhHHHHHHHHHHHcCcEEeecC-
Q psy8199 549 NILQRISQDMKKITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDPEQ--------IETFSKKFFVAALKNELLLRPIG- 618 (965)
Q Consensus 549 ~~~~~~~~~~~~l~~~L~~l-~~~~~i~~v~g~G~~~~i~~~~~~~~~--------~~~~~~~~~~~l~~~Gi~~~~~~- 618 (965)
++.++++++++++++.|+++ .+++.+..+++.|+|+++++...+... .......+.+.|+++||++++.+
T Consensus 322 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~ 401 (429)
T 4e77_A 322 GVYETLTELTDSLATGLRHAAKEENIPLVVNHVGGMFGLFFTNADTVTCYQDVMNCDVERFKRFFHLMLEEGVYLAPSAF 401 (429)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEECCSSSCCCSHHHHHTSCHHHHHHHHHHHHHTTEECCSSTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEeeeEEEEEEccCcccccccccccccHHHHHHHHHHHHHCCeEEeecCC
Confidence 89999999999999999886 455666688999999999986211000 11223578889999999999875
Q ss_pred CEEEEeCCcccCHHHHHHHHHhhhccc
Q psy8199 619 NTVYLMPPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 619 ~~lR~~p~~~~t~~~i~~~~~~l~~~~ 645 (965)
..+| +++.+++++++++++++.+.+
T Consensus 402 ~~~~--~~~~~t~e~i~~~l~~l~~~l 426 (429)
T 4e77_A 402 EAGF--MSLAHSNEDIQKTVNAARRCF 426 (429)
T ss_dssp SCEE--CCTTCCHHHHHHHHHHHHHHH
T ss_pred CCEE--EeccCCHHHHHHHHHHHHHHH
Confidence 3444 468999999999999987654
|
| >1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-47 Score=441.62 Aligned_cols=385 Identities=23% Similarity=0.360 Sum_probs=319.6
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhH
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGAS 325 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGse 325 (965)
+|+||.||++|||+.+++|+.+|||+||+|++|+.++++...+.+ .+++++...++++++++.++.+.++|+|++||+|
T Consensus 35 ~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~la~~~~~~~~~v~~~~gg~e 113 (433)
T 1zod_A 35 SFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHLF-SEMLSRPVVDLATRLANITPPGLDRALLLSTGAE 113 (433)
T ss_dssp TEEECTTCCEEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCCCCC-TTCCCHHHHHHHHHHHHHSCTTCCEEEEESCHHH
T ss_pred CEEEeCCCCEEEEcccchhccccCCCCHHHHHHHHHHHHhCcccc-cccCCHHHHHHHHHHHHhCCCCcCEEEEeCchHH
Confidence 899999999999999999999999999999999999998765432 4677888999999999999877899999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHH
Q psy8199 326 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIAR 405 (965)
Q Consensus 326 A~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (965)
|++.|+++++.+ +++++||+++++|||++..++++++... ...+.+...++..++.|..+..+++.+.+.+..
T Consensus 114 a~~~a~~~~~~~------~~~~~vi~~~~~yhg~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 186 (433)
T 1zod_A 114 SNEAAIRMAKLV------TGKYEIVGFAQSWHGMTGAAASATYSAG-RKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYL 186 (433)
T ss_dssp HHHHHHHHHHHH------HTCCEEEEETTCCCCSSHHHHHTCCSSC-CSSSCCCCTTEEEECCCCTTSCCCEETTEECHH
T ss_pred HHHHHHHHHHHh------hCCCeEEEECCCcCCCChhHHhhcCCcc-ccccCCCCCCceEecCCcccccccCCchhhhHH
Confidence 999999988765 3678999999999999998888876543 333445556777777764433221111112334
Q ss_pred HHHHHHHHHHHhC-CCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCc
Q psy8199 406 CAIFDLEILLKKN-HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWP 484 (965)
Q Consensus 406 ~d~~~le~~l~~~-~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~p 484 (965)
.|+++|++++++. .+++++|++|| +++++|.++++++++++|+++|++||+++|+||||+||||+|.+++++++++.|
T Consensus 187 ~d~~~le~~l~~~~~~~~~~vi~~p-~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~g~~g~~~~~~~~~~~~ 265 (433)
T 1zod_A 187 AELDYAFDLIDRQSSGNLAAFIAEP-ILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQRDGVTP 265 (433)
T ss_dssp HHHHHHHHHHHHHCCSCEEEEEECS-EETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCC
T ss_pred HHHHHHHHHHHhcCCCCeEEEEEcc-ccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCchHhHHhhcCCCC
Confidence 5789999998753 25789999999 889999889999999999999999999999999999999999888888889999
Q ss_pred ceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Q psy8199 485 DFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKA 564 (965)
Q Consensus 485 Divt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~ 564 (965)
|+++|||++++| +|+|++++++++++.+... .+.+++|+++|+++++++.++|+.++++++.+++++++++++++
T Consensus 266 di~s~sK~~~~G-~~ig~~~~~~~~~~~~~~~----~~~~~~t~~~~~~~~~a~~aal~~~~~~~~~~~~~~~~~~l~~~ 340 (433)
T 1zod_A 266 DILTLSKTLGAG-LPLAAIVTSAAIEERAHEL----GYLFYTTHVSDPLPAAVGLRVLDVVQRDGLVARANVMGDRLRRG 340 (433)
T ss_dssp SEEEECHHHHTT-SSCEEEEECHHHHHHHHHT----TCCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred CEEEecccccCC-CCeeEEEEhHHHHHhhccC----CCCCCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 999999999988 8999999999999888651 13466899999999999999999988778999999999999999
Q ss_pred HHcc-cCCCceeeeeceeEEEEEEEeecCcc---chhhHHHHHHHHHHHcCcEEeecC-----CEEEEeCCcccCHHHHH
Q psy8199 565 LTSL-ITHPKIINFRQKGMIWAFDVIIEDPE---QIETFSKKFFVAALKNELLLRPIG-----NTVYLMPPYILNKNEIQ 635 (965)
Q Consensus 565 L~~l-~~~~~i~~v~g~G~~~~i~~~~~~~~---~~~~~~~~~~~~l~~~Gi~~~~~~-----~~lR~~p~~~~t~~~i~ 635 (965)
|+++ ..++.+..+++.|+|+++++. .+.. ........+.+.|+++||++.+++ +++||+|++.+++++++
T Consensus 341 l~~l~~~~~~~~~~~~~g~~~~i~~~-~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~lRi~~~~~~t~~~i~ 419 (433)
T 1zod_A 341 LLDLMERFDCIGDVRGRGLLLGVEIV-KDRRTKEPADGLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEID 419 (433)
T ss_dssp HHHHHHHCTTEEEEEEETTEEEEEEE-EETTTTEECTTHHHHHHHHHHHTTEECCEECCTTSCCEEEECCCTTCCHHHHH
T ss_pred HHHHHHhCCCeEEEEEEEEEEEEEEe-cCccccCCChHHHHHHHHHHHHCCCeEeccCCCCCCCEEEEECCcCCCHHHHH
Confidence 9887 356777788999999999886 2110 001224568888999999998864 79999999999999999
Q ss_pred HHHHhhhccc
Q psy8199 636 HMTSAIFQTF 645 (965)
Q Consensus 636 ~~~~~l~~~~ 645 (965)
++++++.+.+
T Consensus 420 ~~l~~l~~~l 429 (433)
T 1zod_A 420 LGLSLLGQAI 429 (433)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999987654
|
| >2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-47 Score=440.52 Aligned_cols=365 Identities=25% Similarity=0.434 Sum_probs=312.2
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhH
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGAS 325 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGse 325 (965)
+|+||.||++|||+.+++|++++||+||+|++|+.+++++..+++ ..+.++...+++++|+++++ .++|+|++||+|
T Consensus 49 ~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~ai~~~~~~~~~~~-~~~~~~~~~~l~~~la~~~g--~~~v~~~~ggte 125 (420)
T 2pb2_A 49 SRVWDQQGKEYIDFAGGIAVTALGHCHPALVEALKSQGETLWHTS-NVFTNEPALRLGRKLIDATF--AERVLFMNSGTE 125 (420)
T ss_dssp TEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCCCCC-TTSCCHHHHHHHHHHHHHSS--CSEEEEESSHHH
T ss_pred CEEEECCCCEEEEccccccccccCCCCHHHHHHHHHHHHhccccc-CccCCHHHHHHHHHHHhhCC--CCeEEEeCCHHH
Confidence 899999999999999999999999999999999999998865543 34678899999999999984 689999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHH
Q psy8199 326 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIAR 405 (965)
Q Consensus 326 A~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (965)
|++.|+++++.++..+|.+++++||+++++|||++..++..++...++..+.++..++..+|.
T Consensus 126 A~~~al~~~~~~~~~~~~~g~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~----------------- 188 (420)
T 2pb2_A 126 ANETAFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGFGPKPADIIHVPF----------------- 188 (420)
T ss_dssp HHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCHHHHTTSSSCCSCEEEECT-----------------
T ss_pred HHHHHHHHHHHHhhhccCCCCCEEEEEeCCcCCcCHHHHHhcCCccccccCCCCCCCeEEecC-----------------
Confidence 999999999988777777777899999999999998888777755444455566666666664
Q ss_pred HHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcc
Q psy8199 406 CAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPD 485 (965)
Q Consensus 406 ~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pD 485 (965)
+|+++|++++. +++++|++|| +++++|.+.++.+++++|+++|++||++||+||+|+||||+|.+++++.+++.||
T Consensus 189 ~d~~~le~~i~---~~~~~vi~~p-~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~~g~~~~g~~~~~~~~~~~~d 264 (420)
T 2pb2_A 189 NDLHAVKAVMD---DHTCAVVVEP-IQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDLFAYMHYGVTPD 264 (420)
T ss_dssp TCHHHHHHHCC---TTEEEEEECS-EETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCCS
T ss_pred CCHHHHHHHhc---cCceEEEEeC-CcCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCCcCcccCCcHHHHHhcCCCCC
Confidence 36788988885 4789999999 8998888888999999999999999999999999999999998888888899999
Q ss_pred eeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Q psy8199 486 FLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKAL 565 (965)
Q Consensus 486 ivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L 565 (965)
++||||++++| +|+|++++++++++.+.. ..+++||++||++|+++.++|+.++++++.++++++++++.+.|
T Consensus 265 iit~sK~l~~G-~~iG~~~~~~~l~~~l~~------~~~~~t~~~~~~~~aa~~a~L~~~~~~~~~~~~~~~~~~l~~~L 337 (420)
T 2pb2_A 265 ILTSAKALGGG-FPVSAMLTTQEIASAFHV------GSHGSTYGGNPLACAVAGAAFDIINTPEVLQGIHTKRQQFVQHL 337 (420)
T ss_dssp EEEECGGGGTT-SCCEEEEECHHHHTTCC----------CCEECCCHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHH
T ss_pred eEEecccccCC-CceEEEEEhHHHHHhhcC------CCcCcccCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 99999999988 799999999998887754 24778999999999999999999887788999999999999999
Q ss_pred Hccc-CCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecC-CEEEEeCCcccCHHHHHHHHHhhhc
Q psy8199 566 TSLI-THPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG-NTVYLMPPYILNKNEIQHMTSAIFQ 643 (965)
Q Consensus 566 ~~l~-~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~-~~lR~~p~~~~t~~~i~~~~~~l~~ 643 (965)
+++. .++.+..+++.|+|+.+++. .+ .......+.+.|.++||++.+.+ +++||+||+.+++++++++++++.+
T Consensus 338 ~~~~~~~~~~~~~~~~g~~~~v~~~-~~---~~~~~~~l~~~l~~~Gi~v~~~~~~~iRl~~~~~~t~eei~~~~~~l~~ 413 (420)
T 2pb2_A 338 QAIDEQFDIFSDIRGMGLLIGAELK-PK---YKGRARDFLYAGAEAGVMVLNAGADVMRFAPSLVVEEADIHEGMQRFAQ 413 (420)
T ss_dssp HHHHHHHCCEEEEEEETTEEEEEEC-GG---GTTCHHHHHHHHHHTTEECEESSTTEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred HHHHhcCCCeEEEEecceEEEEEEC-CC---chHHHHHHHHHHHHCCCEEEeCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 8863 45667778899999999885 11 00124568888999999999874 7999999999999999999999876
Q ss_pred cc
Q psy8199 644 TF 645 (965)
Q Consensus 644 ~~ 645 (965)
++
T Consensus 414 ~l 415 (420)
T 2pb2_A 414 AV 415 (420)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-47 Score=440.19 Aligned_cols=369 Identities=21% Similarity=0.255 Sum_probs=309.0
Q ss_pred CCCce-----eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCC
Q psy8199 241 LPDDI-----SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLG 315 (965)
Q Consensus 241 ~p~~~-----~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~ 315 (965)
.|+++ +|+||.||++|||+.+|+|++++||+||+|++|+.++++++.++ +++++...+|++++++.++ +.+
T Consensus 34 ~p~~~~~~~G~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~---~~~~~~~~~la~~l~~~~~-~~~ 109 (427)
T 3fq8_A 34 QPIVFDRVKDAYAWDVDGNRYIDYVGTWGPAICGHAHPEVIEALKVAMEKGTSF---GAPCALENVLAEMVNDAVP-SIE 109 (427)
T ss_dssp CCCCEEEEEBTEEEETTSCEEEESSGGGTTCTTCBTCHHHHHHHHHHHTTCSCC---SSCCHHHHHHHHHHHHHST-TCS
T ss_pred CCceEEEeeeCEEEECCCCEEEECCCchhhhccCCCCHHHHHHHHHHHHhCCCc---CCCCHHHHHHHHHHHHhCC-CCC
Confidence 45555 99999999999999999999999999999999999999886443 3478999999999999997 789
Q ss_pred eEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCC--------CeeEec
Q psy8199 316 HCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLN--------KTYIIT 387 (965)
Q Consensus 316 ~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~ 387 (965)
+|+|++||+||++.|+++++.+ +++++||+++++|||++..++..++....... .+... .+..+|
T Consensus 110 ~v~~~~ggsea~~~al~~a~~~------~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 182 (427)
T 3fq8_A 110 MVRFVNSGTEACMAVLRIMRAY------TGRDKIIKFEGCYHGHADMFLVKAGSGVATLG-LPSSPGVPKKTTANTLTTP 182 (427)
T ss_dssp EEEEESSHHHHHHHHHHHHHHH------HCCCEEEEEETCCCCSCGGGCSSCCTHHHHHT-CCSCSSSCHHHHTTEEEEE
T ss_pred EEEEeCCHHHHHHHHHHHHHHh------hCCCEEEEECCCcCCCCHHHHHhcCCcccccC-CCCCCCCCCcccCceeecC
Confidence 9999999999999999999887 47789999999999999888887764321110 01111 122222
Q ss_pred CCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccC
Q psy8199 388 TPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVG 467 (965)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg 467 (965)
. +|+++|+++++++++++++|++|| +++++|.+.++++|+++|+++|++||++||+||||+|
T Consensus 183 ~-----------------~d~~~le~~l~~~~~~~~~vi~~p-~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g 244 (427)
T 3fq8_A 183 Y-----------------NDLEAVKALFAENPGEIAGVILEP-IVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITG 244 (427)
T ss_dssp T-----------------TCHHHHHHHHHHSTTTEEEEEECS-SBCTTSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTB
T ss_pred C-----------------CCHHHHHHHHHhCCCCEEEEEEcC-CcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccc
Confidence 2 478999999987667899999999 9999999999999999999999999999999999999
Q ss_pred CCcccccccccccCCCcceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc
Q psy8199 468 CGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK 547 (965)
Q Consensus 468 ~gr~G~~~~~~~~~~~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~ 547 (965)
| |+|..++.+++++.||++||||++++| +|+|++++++++++.+.. ...+.+++|+++||+++++++++|+.+++
T Consensus 245 ~-~~g~~~~~~~~~~~~di~t~sK~~~~G-~~~G~~~~~~~~~~~~~~---~~~~~~~~t~~~~~~~~aa~~aal~~~~~ 319 (427)
T 3fq8_A 245 F-RIAYGGVQEKFGVTPDLTTLGKIIGGG-LPVGAYGGKREIMQLVAP---AGPMYQAGTLSGNPLAMTAGIKTLELLRQ 319 (427)
T ss_dssp T-TTBTTHHHHHTTCCCSEEEECGGGGTT-SSCEEEEECHHHHTTBTT---TSSBCCCCTTTTCHHHHHHHHHHHHHHTS
T ss_pred c-ccCcchhhHhcCCCCChhhhhhhhhCC-cceEEEEEcHHHHHhhcc---CCCccccCCCCcCHHHHHHHHHHHHHHHh
Confidence 9 999888889999999999999999988 799999999999998864 13356889999999999999999999888
Q ss_pred ccHHHHHHHHHHHHHHHHHcc-cCCCceeeeeceeEEEEEEEeecCccc--------hhhHHHHHHHHHHHcCcEEeecC
Q psy8199 548 DNILQRISQDMKKITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDPEQ--------IETFSKKFFVAALKNELLLRPIG 618 (965)
Q Consensus 548 ~~~~~~~~~~~~~l~~~L~~l-~~~~~i~~v~g~G~~~~i~~~~~~~~~--------~~~~~~~~~~~l~~~Gi~~~~~~ 618 (965)
+++.++++++++++++.|+++ ...+....+++.|+++++++. .+... .......+.+.|+++||++++.+
T Consensus 320 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gi~v~~~~ 398 (427)
T 3fq8_A 320 PGTYEYLDQITKRLSDGLLAIAQETGHAACGGQVSGMFGFFFT-EGPVHNYEDAKKSDLQKFSRFHRGMLEQGIYLAPSQ 398 (427)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEESS-SCCCCSHHHHTTSCHHHHHHHHHHHHHTTEECCSST
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeeeEEEEEEe-cCccccccccccccHHHHHHHHHHHHHCCcEEecCC
Confidence 889999999999999999887 445555578899999999885 21111 11224568889999999999875
Q ss_pred CEEEEeCCcccCHHHHHHHHHhhhccc
Q psy8199 619 NTVYLMPPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 619 ~~lR~~p~~~~t~~~i~~~~~~l~~~~ 645 (965)
. .|+.+++.+++++++++++++.+.+
T Consensus 399 ~-~r~~~~~~~t~e~i~~~l~~l~~~l 424 (427)
T 3fq8_A 399 F-EAGFTSLAHTEEDIDATLAAARTVM 424 (427)
T ss_dssp T-SCEECCTTCCHHHHHHHHHHHHHHH
T ss_pred C-CCEEeeCcCCHHHHHHHHHHHHHHH
Confidence 3 3667789999999999999987654
|
| >2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-45 Score=422.33 Aligned_cols=370 Identities=23% Similarity=0.426 Sum_probs=304.2
Q ss_pred eEEEecCCcccccccccchhccCCCC-CHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCC-CCeEEEcCCh
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHS-NSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYK-LGHCFYGSDG 323 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~-~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~-~~~v~~~~sG 323 (965)
+|+||.+|++|||+.++.|++++||+ ||+|++|+.++++...+++...++++...++++++++.++.+ .++|+|++||
T Consensus 34 ~~~~d~~g~~~lD~~~~~~~~~lG~~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~gg 113 (419)
T 2eo5_A 34 VWIYDVDGNKYLDFTSGIGVNNLGWPSHPEVIKIGIEQMQKLAHAAANDFYNIPQLELAKKLVTYSPGNFQKKVFFSNSG 113 (419)
T ss_dssp TEEEETTSCEEEESSGGGGTTTTCBSCCHHHHHHHHHHHTTSCCCSCSCSCCHHHHHHHHHHHHHSSCSSCEEEEEESSH
T ss_pred CEEEECCCCEEEEccCChhhhccCCCCCHHHHHHHHHHHhhCccccccccCCHHHHHHHHHHHHhCCCCcCCEEEEeCch
Confidence 89999999999999999999999999 999999999999876544435678888999999999999866 6799999999
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCc-CccchhcccCCCeeEecCCCCCCCCCCCC---
Q psy8199 324 ASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQ-SFKEIYTSLLNKTYIITTPDSRNINKGNS--- 399 (965)
Q Consensus 324 seA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 399 (965)
+||++.|+++++.+ + +++||+++++|||++..++++++.. .++..+.+...++..+|.++.+..+++..
T Consensus 114 ~ea~~~ai~~~~~~------~-~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~~~ 186 (419)
T 2eo5_A 114 TEAIEASIKVVKNT------G-RKYIIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYPNPYRNPWHINGYE 186 (419)
T ss_dssp HHHHHHHHHHHHTT------S-CCEEEEETTCCCCSSHHHHHHCCSCGGGGCSSCCCCTTEEEECCCCSSSCTTCCCTTT
T ss_pred HHHHHHHHHHHHHh------h-CCcEEEECCCcCCCCHhhHhhcCCccccccccCCCCCCCEEECCCccccccccccccc
Confidence 99999999988764 2 6899999999999999888887754 44444555555677887765433222211
Q ss_pred -h-hHHHHHHHHHHH-HHHHhCC--CcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccccc
Q psy8199 400 -A-NEIARCAIFDLE-ILLKKNH--NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKF 474 (965)
Q Consensus 400 -~-~~~~~~d~~~le-~~l~~~~--~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~ 474 (965)
. ..+. .|+++|+ +++++.. +++++|++|| +++++|.++++++++++|+++|++||+++|+||+|+|||++|.+
T Consensus 187 ~~~~~~~-~~~~~l~~~~i~~~~~~~~~~~vi~~p-~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~DE~~~~~g~~g~~ 264 (419)
T 2eo5_A 187 NPSELVN-RVIEFIEDYIFVNLVPPEEVAGIFFEP-IQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQMGLGRTGKL 264 (419)
T ss_dssp CHHHHHH-HHHHHHHHTHHHHTCCGGGEEEEEECS-SBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSS
T ss_pred cchhhHH-HHHHHHHHHHHhhccCCCCEEEEEEeC-ccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCcch
Confidence 0 1233 5788999 8887431 4689999999 88889988999999999999999999999999999999999987
Q ss_pred ccccccCCCcceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHH
Q psy8199 475 FACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRI 554 (965)
Q Consensus 475 ~~~~~~~~~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~ 554 (965)
++++++++.||++||||++++|++|+|+++++++++ .+ . ..+++|+++|+++++++.++|+.+++ +.+++
T Consensus 265 ~~~~~~~~~~d~~t~sK~~~~G~~riG~~~~~~~~~-~~-~------~~~~~t~~~n~~~~~aa~aal~~~~~--~~~~~ 334 (419)
T 2eo5_A 265 FAIENFNTVPDVITLAKALGGGIMPIGATIFRKDLD-FK-P------GMHSNTFGGNALACAIGSKVIDIVKD--LLPHV 334 (419)
T ss_dssp SGGGGGTCCCSEEEECGGGGTTTSCCEEEEEEGGGC-CC-------------CCCCCHHHHHHHHHHHHHHHH--HHHHH
T ss_pred hhHHhcCCCCCEEEecccccCCccceEEEEEchHhh-cC-C------cccCCCCCCCHHHHHHHHHHHHHHHH--HHHHH
Confidence 788888999999999999998768999999999987 66 3 14678999999999999999998764 88999
Q ss_pred HHHHHHHHHHHHcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecC-CEEEEeCCcccCHHH
Q psy8199 555 SQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG-NTVYLMPPYILNKNE 633 (965)
Q Consensus 555 ~~~~~~l~~~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~-~~lR~~p~~~~t~~~ 633 (965)
++++++|.+.|+++ +..+++.|+|+.+++. .+ ..... +.+.|+++||++++.+ +++||+|++.+++++
T Consensus 335 ~~~~~~l~~~L~~~-----~~~~~~~g~~~~i~~~-~~----~~~~~-~~~~l~~~Gv~v~~~~~~~lRis~~~~~t~e~ 403 (419)
T 2eo5_A 335 NEIGKIFAEELQGL-----ADDVRGIGLAWGLEYN-EK----KVRDR-IIGESFKRGLLLLPAGRSAIRVIPPLVISEEE 403 (419)
T ss_dssp HHHHHHHHHHHTTS-----SSEEEEETTEEEEECS-CH----HHHHH-HHHHHHHTTEECEEETTTEEEECCCTTCCHHH
T ss_pred HHHHHHHHHHHHHh-----hhheEeeeEEEEEEEe-cC----ccHHH-HHHHHHHCCCEEecCCCCEEEEECCCCCCHHH
Confidence 99999999999765 4567889999988773 11 12245 7788899999999975 899999999999999
Q ss_pred HHHHHHhhhccc
Q psy8199 634 IQHMTSAIFQTF 645 (965)
Q Consensus 634 i~~~~~~l~~~~ 645 (965)
++++++++.+.+
T Consensus 404 i~~~l~~l~~~l 415 (419)
T 2eo5_A 404 AKQGLDILKKVI 415 (419)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999987653
|
| >2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-45 Score=423.29 Aligned_cols=365 Identities=17% Similarity=0.241 Sum_probs=297.3
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhH
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGAS 325 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGse 325 (965)
+|+||.||++|||+.+++|++++||+||+|++|+.+++++..+ .+++++...+++++|++.++ +.++|+|++||+|
T Consensus 48 ~~~~d~~g~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~~~~---~~~~~~~~~~l~~~la~~~~-~~~~v~~~~sgse 123 (434)
T 2epj_A 48 AYLYTVDGARIVDLVLAYGPLILGHKHPRVLEAVEEALARGWL---YGAPGEAEVLLAEKILGYVK-RGGMIRFVNSGTE 123 (434)
T ss_dssp TEEEETTCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHHTCSC---CSSCCHHHHHHHHHHHHHHC-TTCEEEEESSHHH
T ss_pred CEEEECCCCEEEEcccchhcccCCCCCHHHHHHHHHHHHhCCC---CCCCCHHHHHHHHHHHHhCC-CCCEEEEeCCHHH
Confidence 8999999999999999999999999999999999999987422 35678889999999999987 6899999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccC--------CCeeEecCCCCCCCCCC
Q psy8199 326 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLL--------NKTYIITTPDSRNINKG 397 (965)
Q Consensus 326 A~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~ 397 (965)
|++.|+++|+.+ +++++||+++++|||++..+++.++...... ..+.. ..+..+|.
T Consensus 124 A~~~al~~ar~~------~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~-~~p~~~g~~~~~~~~~~~~~~--------- 187 (434)
T 2epj_A 124 ATMTAIRLARGY------TGRDLILKFDGCYHGSHDAVLVAAGSAAAHY-GVPTSAGVPEAVARLTLVTPY--------- 187 (434)
T ss_dssp HHHHHHHHHHHH------HCCCEEEEEETCCCCSSGGGSEECC-------CEESSTTCCHHHHTTEEEEET---------
T ss_pred HHHHHHHHHHHh------hCCCeEEEEcCCcCCCCHHHHHhcCCCcccc-CCCCCCCCCCcccCceEecCC---------
Confidence 999999998876 3678999999999999888776654311000 00111 12333332
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccc
Q psy8199 398 NSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFAC 477 (965)
Q Consensus 398 ~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~ 477 (965)
+|+++|++++++.++++++|++|| +++++|.+.++++|+++|+++|++||++||+||||+|| |+|.++++
T Consensus 188 --------~d~~~le~~l~~~~~~~~~vi~ep-~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~-~~g~~~~~ 257 (434)
T 2epj_A 188 --------NDVEALERVFAEYGDRIAGVIVEP-VIANAGVIPPRREFLAALQRLSRESGALLILDEVVTGF-RLGLEGAQ 257 (434)
T ss_dssp --------TCHHHHHHHHHHHGGGEEEEEECS-SBCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETTTTT-TSSTTHHH
T ss_pred --------CCHHHHHHHHHhCCCCEEEEEEeC-CcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcchhce-eCCcchhh
Confidence 478899999875445799999999 89999999999999999999999999999999999999 88888888
Q ss_pred cccCCCcceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHH
Q psy8199 478 EHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQD 557 (965)
Q Consensus 478 ~~~~~~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~ 557 (965)
+++++.||++||||++++| +|+|++++++++++.+... ....+++||++||++++++.++|+.++++++.++++++
T Consensus 258 ~~~~~~~di~s~sK~l~~G-~~~G~v~~~~~~~~~l~~~---~~~~~~~t~~~~~~~~aa~~a~l~~~~~~~~~~~~~~~ 333 (434)
T 2epj_A 258 GYFNIEGDIIVLGKIIGGG-FPVGAVAGSREVMSLLTPQ---GKVFNAGTFNAHPITMAAGLATLKALEEEPVYSVSREA 333 (434)
T ss_dssp HHHTCCCSEEEEEGGGGTT-SSCEEEEECHHHHTTBTTT---SSBCCCCTTTTCHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHhCCCCCeeeecchhcCC-cceeeeeecHHHHHhhccC---CCcccCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 8899999999999999998 7999999999999877541 12347789999999999999999998778899999999
Q ss_pred HHHHHHHHHcc-cCCCceeeeeceeEEEEEEEeecCcc--------chhhHHHHHHHHHHHcCcEEeecCCEEEEeCCcc
Q psy8199 558 MKKITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDPE--------QIETFSKKFFVAALKNELLLRPIGNTVYLMPPYI 628 (965)
Q Consensus 558 ~~~l~~~L~~l-~~~~~i~~v~g~G~~~~i~~~~~~~~--------~~~~~~~~~~~~l~~~Gi~~~~~~~~lR~~p~~~ 628 (965)
++++++.|+++ .+++.+..+++.|+|+++++. .+.. ........+.+.|+++||++.+++. .|+.+++.
T Consensus 334 ~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-~~~~~~~~ 411 (434)
T 2epj_A 334 AKALEEAASEVLDRTGLPYTINRVESMMQLFIG-VEEVSNAAQARKADKKFYVKLHEEMLRRGVFIAPSNL-EAVFTGLP 411 (434)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEEETTEEEEEET-CSCCSSHHHHTTSCHHHHHHHHHHHHHTTEECCSSTT-SCEECCTT
T ss_pred HHHHHHHHHHHHhhCCCcEEEEEeeeEEEEEEe-CCCcccchhccccCHHHHHHHHHHHHHCCeEEeccCC-CcEEEecc
Confidence 99999999886 233444567899999999885 2100 0012345688889999999998652 24556789
Q ss_pred cCHHHHHHHHHhhhcccc
Q psy8199 629 LNKNEIQHMTSAIFQTFN 646 (965)
Q Consensus 629 ~t~~~i~~~~~~l~~~~~ 646 (965)
+++++++++++++.+.+.
T Consensus 412 ~t~e~i~~~l~~l~~~l~ 429 (434)
T 2epj_A 412 HQGEALEIAVEGLRSSLK 429 (434)
T ss_dssp CSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 999999999999876643
|
| >2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-45 Score=418.31 Aligned_cols=362 Identities=22% Similarity=0.296 Sum_probs=295.7
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhH
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGAS 325 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGse 325 (965)
+|+||.||++|||+.+++|++++||+||+|++|+.+++++..+ .+++++...++++++++++| +.++|+|++||+|
T Consensus 44 ~~~~d~~g~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~---~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~g~e 119 (424)
T 2e7u_A 44 AYVWDADGNRYLDYVMSWGPLILGHAHPKVLARVRETLERGLT---FGAPSPLEVALAKKVKRAYP-FVDLVRFVNSGTE 119 (424)
T ss_dssp TEEEETTCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHHTCSC---CSSCCHHHHHHHHHHHHHCT-TCCEEEEESSHHH
T ss_pred CEEEeCCCCEEEEccccccccccCCCCHHHHHHHHHHHHhCCC---CCCCCHHHHHHHHHHHHhCC-CCCEEEEeCCHHH
Confidence 8999999999999999999999999999999999999987432 35678889999999999987 7899999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccC--------CCeeEecCCCCCCCCCC
Q psy8199 326 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLL--------NKTYIITTPDSRNINKG 397 (965)
Q Consensus 326 A~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~ 397 (965)
|++.|+++|+.+ +++++||+++++|||++..++..++..... ...+.. .....+|.
T Consensus 120 a~~~al~~ar~~------~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~-~~~p~~~g~~~~~~~~~~~~~~--------- 183 (424)
T 2e7u_A 120 ATMSALRLARGY------TGRPYIVKFRGNYHGHADGLLVEAGSGALT-LGVPSSAGVPEEYAKLTLVLEY--------- 183 (424)
T ss_dssp HHHHHHHHHHHH------HCCCEEEEETTCCCCCCGGGSEECCSSSCC-BCEESSTTCCHHHHTTEEEECT---------
T ss_pred HHHHHHHHHHHh------hCCCEEEEECCCcCCCcHHHHHhcCCcccc-cCCCCCCCCCCccCCceEeCCC---------
Confidence 999999998876 367899999999999988777655432110 000111 12333332
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccc
Q psy8199 398 NSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFAC 477 (965)
Q Consensus 398 ~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~ 477 (965)
+|+++|++++++.++++++|++|| +++++|.+.++++|+++|+++ ++||++||+||+|+|| |+|.++++
T Consensus 184 --------~d~~~le~~l~~~~~~~~~vi~ep-~~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv~~g~-~~g~~~~~ 252 (424)
T 2e7u_A 184 --------NDPEGLREVLKRRGEEIAAIIFEP-VVGNAGVLVPTEDFLKALHEA-KAYGVLLIADEVMTGF-RLAFGGAT 252 (424)
T ss_dssp --------TCHHHHHHHHHHHGGGEEEEEECS-SBCTTSCBCCCHHHHHHHHHG-GGGTCEEEEECTTTTT-TSSTTHHH
T ss_pred --------CCHHHHHHHHHhCCCCEEEEEEeC-CCCCCCCcCCCHHHHHHHHHH-HHcCCEEEEecCcccc-ccchhHHH
Confidence 478899998875445789999999 888899999999999999999 9999999999999999 88888888
Q ss_pred cccCCCcceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc-ccHHHHHHH
Q psy8199 478 EHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK-DNILQRISQ 556 (965)
Q Consensus 478 ~~~~~~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~-~~~~~~~~~ 556 (965)
+++++.||++||||++++| +|+|++++++++++.+... ....+++||++||++|+++.++|+.+++ +++.+++++
T Consensus 253 ~~~~~~~di~s~sK~l~~G-~~~G~~~~~~~~~~~~~~~---~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~ 328 (424)
T 2e7u_A 253 ELLGLKPDLVTLGKILGGG-LPAAAYAGRREIMEKVAPL---GPVYQAGTLSGNPLAMAAGLATLELLEENPGYYAYLED 328 (424)
T ss_dssp HHHTCCCSEEEECGGGGTT-SSCEEEEECHHHHTTBTTT---SSBCCCCTTCSCHHHHHHHHHHHHHHHHCTHHHHHHHH
T ss_pred HHhCCCcchhhhhhhhhCC-cceEEEEEcHHHHhhhccc---CCcccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 8899999999999999988 8999999999999887641 1235788999999999999999999877 789999999
Q ss_pred HHHHHHHHHHcc-cCCCceeeeeceeEEEEEEEeecCcc--------chhhHHHHHHHHHHHcCcEEeecCCEEEEeCCc
Q psy8199 557 DMKKITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDPE--------QIETFSKKFFVAALKNELLLRPIGNTVYLMPPY 627 (965)
Q Consensus 557 ~~~~l~~~L~~l-~~~~~i~~v~g~G~~~~i~~~~~~~~--------~~~~~~~~~~~~l~~~Gi~~~~~~~~lR~~p~~ 627 (965)
++++++++|+++ .+++.+..+++.|+|+++++. .+.. ........+.+.|+++||++.+.+. .|+.+++
T Consensus 329 ~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-~~~~~~~ 406 (424)
T 2e7u_A 329 LGARLEAGLKEVLKEKGLPHTVNRVGSMITVFFT-EGPVVTFQDARRTDTELFKRFFHGLLDRGIYWPPSNF-EAAFLSV 406 (424)
T ss_dssp HHHHHHHHHHHHHHHTTCCCEEEEETTEEEEESS-SSCCCSHHHHTTSCHHHHHHHHHHHHTTTEECCSSSS-SCEECCT
T ss_pred HHHHHHHHHHHHHHhCCCceEEEeeceEEEEEEe-CCCCcchhhhcccCHHHHHHHHHHHHHCCeEEeccCC-CceEeec
Confidence 999999999886 334544568899999999875 2110 0112345688889999999998652 2345669
Q ss_pred ccCHHHHHHHHHhhhcc
Q psy8199 628 ILNKNEIQHMTSAIFQT 644 (965)
Q Consensus 628 ~~t~~~i~~~~~~l~~~ 644 (965)
.+++++++++++++.++
T Consensus 407 ~~t~~~i~~~l~~l~~~ 423 (424)
T 2e7u_A 407 AHREEDVEKTLEALRKA 423 (424)
T ss_dssp TCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 99999999999988653
|
| >3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-43 Score=401.60 Aligned_cols=360 Identities=26% Similarity=0.438 Sum_probs=311.2
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhH
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGAS 325 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGse 325 (965)
+|+||.||++|||+.+++++.++||+||+|.+|+.++++...+.. ..++.+...++++++++.++ .++++|++||++
T Consensus 28 ~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~la~~~g--~~~v~~~~~gt~ 104 (392)
T 3ruy_A 28 VWVEDPEGNRYMDLLSAYSAVNQGHRHPKIINALIDQANRVTLTS-RAFHSDQLGPWYEKVAKLTN--KEMVLPMNTGAE 104 (392)
T ss_dssp TEEECTTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCSCCC-TTSEETTHHHHHHHHHHHHT--CSEEEEESSHHH
T ss_pred CEEEeCCCCEEEEcCCChhhhccCCCCHHHHHHHHHHHHhccccc-cccCCHHHHHHHHHHHHhcC--CCEEEEeCcHHH
Confidence 899999999999999999999999999999999999998865543 34678889999999999985 789999999999
Q ss_pred HHHHHHHHHHHHH-HhcCC-CCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHH
Q psy8199 326 AVEVALKMSFHYW-YNKGF-LNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEI 403 (965)
Q Consensus 326 A~~~Al~~a~~~~-~~~g~-~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (965)
|++.|+++++.++ ..+|. +++++|++.+++|||.+..++++++...++..+.+...++..++.
T Consensus 105 a~~~al~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 169 (392)
T 3ruy_A 105 AVETAIKTARRWAYDVKKVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVIPY--------------- 169 (392)
T ss_dssp HHHHHHHHHHHHHHHTSCCCTTCCEEEEETTCCCCSSHHHHHTCSCTTTTTTCCSCCSSEEEECT---------------
T ss_pred HHHHHHHHHHHhhhhccCCCCCCcEEEEEcCCcCCCCHhhhhccCChhhccccCCCCCCCeeeCc---------------
Confidence 9999999887652 22332 346799999999999999998888876766666666666655544
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCC
Q psy8199 404 ARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIW 483 (965)
Q Consensus 404 ~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~ 483 (965)
+|+++|+++++ +++++|+++| ++|++|.+.++++|+++|.++|++||+++|+||+|+|||++|.+++.+.+++.
T Consensus 170 --~d~~~l~~~l~---~~~~~v~~~~-~~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~ 243 (392)
T 3ruy_A 170 --GDLEALKAAIT---PNTAAFILEP-IQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGKVFACDWDNVT 243 (392)
T ss_dssp --TCHHHHHHHCC---TTEEEEEECS-SBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTTTSSSSGGGGGTCC
T ss_pred --ccHHHHHHHhc---cCeEEEEEeC-ccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCccccchhhhccCCC
Confidence 36889998885 5789999999 99999999999999999999999999999999999999999998888889999
Q ss_pred cceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Q psy8199 484 PDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITK 563 (965)
Q Consensus 484 pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~ 563 (965)
||++||||+++||++|+|++++++++++.+.. ..+++++++|+++++++.++|+.+..+++.++++++.+++.+
T Consensus 244 ~d~~~~SK~l~gG~~~~G~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~ 317 (392)
T 3ruy_A 244 PDMYILGKALGGGVFPISCAAANRDILGVFEP------GSHGSTFGGNPLACAVSIAALEVLEEEKLTERSLQLGEKLVG 317 (392)
T ss_dssp CSEEEECGGGGTTTSCCEEEEECHHHHTTCCT------TSSCCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred CCEEEEchhhhCChhhhEEEEECHHHHhhhcc------CCcCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 99999999999987899999999999887754 357789999999999999999988777899999999999999
Q ss_pred HHHcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecC-CEEEEeCCcccCHHHHHHHHHhhh
Q psy8199 564 ALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG-NTVYLMPPYILNKNEIQHMTSAIF 642 (965)
Q Consensus 564 ~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~-~~lR~~p~~~~t~~~i~~~~~~l~ 642 (965)
.|+++ ..+.+..+++.|.++.+.+. . ....+.+.|.++||++.|.+ +++|++|++.+++++++++++++.
T Consensus 318 ~L~~~-~~~~~~~~~~~g~~~~~~~~-~-------~~~~l~~~l~~~gi~v~~~~~~~iRi~~~~~~~~~~i~~~~~~l~ 388 (392)
T 3ruy_A 318 QLKEI-DNPMITEVRGKGLFIGIELN-E-------PARPYCEQLKAAGLLCKETHENVIRIAPPLVISEEDLEWAFQKIK 388 (392)
T ss_dssp HHTTC-CCTTEEEEEEETTEEEEEES-S-------CSHHHHHHHHTTTEECCCBTTTEEEECCCTTCCHHHHHHHHHHHH
T ss_pred HHHHh-cCCCceEEEeeeeEEEEEEc-c-------hHHHHHHHHHHCCcEEecCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 99876 23567788899999999874 1 13467788999999999875 799999999999999999999887
Q ss_pred cc
Q psy8199 643 QT 644 (965)
Q Consensus 643 ~~ 644 (965)
++
T Consensus 389 ~~ 390 (392)
T 3ruy_A 389 AV 390 (392)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-44 Score=412.65 Aligned_cols=366 Identities=18% Similarity=0.267 Sum_probs=279.0
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhH
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGAS 325 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGse 325 (965)
+|+||.||++|||+.+++|++++||+||+|++|+.++++...+ .++.++...++++++++.++ +.++|+|++||+|
T Consensus 49 ~~~~d~~g~~~iD~~~~~~~~~lg~~~~~v~~a~~~~~~~~~~---~~~~~~~~~~la~~l~~~~~-~~~~v~~~~gg~e 124 (453)
T 2cy8_A 49 VHKTDVDGNVYLDFFGGHGALVLGHGHPRVNAAIAEALSHGVQ---YAASHPLEVRWAERIVAAFP-SIRKLRFTGSGTE 124 (453)
T ss_dssp TEEEETTCCEEEESCTTTTSCTTCBTCHHHHHHHHHHHTTTCS---SCSSCHHHHHHHHHHHHHCT-TCSEEEEESCHHH
T ss_pred CEEEECCCCEEEECcccHhhcccCCCCHHHHHHHHHHHHhCCC---CCCCCHHHHHHHHHHHhhCC-CCCEEEEeCCHHH
Confidence 8999999999999999999999999999999999999987432 25788999999999999987 7889999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCC----cCccchhcccCCCeeEecCCCCCCCCCCCChh
Q psy8199 326 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNI----QSFKEIYTSLLNKTYIITTPDSRNINKGNSAN 401 (965)
Q Consensus 326 A~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (965)
|++.|+++|+.+ +++++||+++++|||++..++..++. +............+..+|.
T Consensus 125 A~~~al~~ar~~------~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~------------- 185 (453)
T 2cy8_A 125 TTLLALRVARAF------TGRRMILRFEGHYHGWHDFSASGYNSHFDGQPAPGVLPETTANTLLIRP------------- 185 (453)
T ss_dssp HHHHHHHHHHHH------HCCCEEEEECC----------------------------CGGGEEEECT-------------
T ss_pred HHHHHHHHHHHh------hCCCEEEEEcCCcCCCchhhHhhcCCccCCCcCCCCCccccCceeecCC-------------
Confidence 999999998866 36788999999999998877765542 1000000000112233332
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccC
Q psy8199 402 EIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAE 481 (965)
Q Consensus 402 ~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~ 481 (965)
+|+++|+++++++++++++|++|| +++++|.++++++|+++|+++|++||++||+||+|+|| |+|.++++++++
T Consensus 186 ----~d~~~le~~l~~~~~~~~~vi~ep-~~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~-~~g~~~~~~~~~ 259 (453)
T 2cy8_A 186 ----DDIEGMREVFANHGSDIAAFIAEP-VGSHFGVTPVSDSFLREGAELARQYGALFILDEVISGF-RVGNHGMQALLD 259 (453)
T ss_dssp ----TCHHHHHHHHHHHGGGEEEEEECS-SEHHHHTEECCHHHHHHHHHHHHHTTCEEEEECTTTTT-TTCTTHHHHHHT
T ss_pred ----CCHHHHHHHHHhcCCCEEEEEECC-CCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecCcccc-ccCchhhhHHhC
Confidence 378899999875445789999999 88889988999999999999999999999999999999 888888888889
Q ss_pred CCcceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHH-HhcccHHHHHHHHHHH
Q psy8199 482 IWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEI-FNKDNILQRISQDMKK 560 (965)
Q Consensus 482 ~~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~-~~~~~~~~~~~~~~~~ 560 (965)
+.||+++|||++++| +|+|++++++++++.+... ......+++||++||++++++.++|+. + .+++.+++++++++
T Consensus 260 ~~~di~s~sK~l~~G-~~~G~v~~~~~~~~~l~~~-~~~~~~~~~t~~~n~~~~aa~~aal~~~~-~~~~~~~~~~~~~~ 336 (453)
T 2cy8_A 260 VQPDLTCLAKASAGG-LPGGILGGREDVMGVLSRG-SDRKVLHQGTFTGNPITAAAAIAAIDTIL-EDDVCAKINDLGQF 336 (453)
T ss_dssp CCCSEEEEEGGGGTT-SSCEEEEECHHHHTTSSSC-C---------CCCCHHHHHHHHHHHHHHH-HTTHHHHHHHHHHH
T ss_pred CCCcEEEEChhhhCC-cceEEEechHHHHHHhccc-cCCCceeCCCCCCCHHHHHHHHHHHHHHh-hhhHHHHHHHHHHH
Confidence 999999999999988 7999999999999877541 112234678999999999999999998 7 67899999999999
Q ss_pred HHHHHHcc-cCCCceeeeeceeEEEEEEEeec-----Cc------c---chhhHHHHHHHHHHHcCcEEeecCCEEEEeC
Q psy8199 561 ITKALTSL-ITHPKIINFRQKGMIWAFDVIIE-----DP------E---QIETFSKKFFVAALKNELLLRPIGNTVYLMP 625 (965)
Q Consensus 561 l~~~L~~l-~~~~~i~~v~g~G~~~~i~~~~~-----~~------~---~~~~~~~~~~~~l~~~Gi~~~~~~~~lR~~p 625 (965)
+++.|+++ .+++.+..+++.|+|+++++. . +. . ........+.+.|+++||++.|.+ .+| +
T Consensus 337 l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gv~v~~~~-~~~--l 412 (453)
T 2cy8_A 337 AREAMNHLFARKGLNWLAYGRFSGFHLMPG-LPPNTTDTGSITRAEVARPDVKMIAAMRMALILEGVDIGGRG-SVF--L 412 (453)
T ss_dssp HHHHHHHHHHHTTCCEEEECCTTEEEEEET-SCTTCCCCHHHHTTCSCCCCHHHHHHHHHHHHHTTEECBTTT-EEE--C
T ss_pred HHHHHHHHHhhCCCcEEEEEeeeEEEEEEe-ccccccccccccccccccccHHHHHHHHHHHHHCCeEEeCCC-CEE--e
Confidence 99999887 345554568899999999885 2 10 0 011224568888999999997654 444 5
Q ss_pred CcccCHHHHHHHHHhhhccccc
Q psy8199 626 PYILNKNEIQHMTSAIFQTFNE 647 (965)
Q Consensus 626 ~~~~t~~~i~~~~~~l~~~~~~ 647 (965)
++.+++++++++++++.+++..
T Consensus 413 ~~~~t~~~i~~~l~~l~~~l~~ 434 (453)
T 2cy8_A 413 SAQHEREHVEHLVTTFDRVLDR 434 (453)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHH
T ss_pred eccCCHHHHHHHHHHHHHHHHH
Confidence 6999999999999998876543
|
| >4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-42 Score=398.38 Aligned_cols=366 Identities=26% Similarity=0.411 Sum_probs=316.5
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhH
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGAS 325 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGse 325 (965)
+|+||.+|++|||+.++++++++||+||++.+|+.+++++..+.. ..++++...++++++++.++ .++++|++||++
T Consensus 31 ~~~~~~~g~~~lD~~~~~~~~~lg~~~p~v~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~la~~~~--~~~v~~~~gg~~ 107 (406)
T 4adb_A 31 SRLWDQQGKEYIDFAGGIAVNALGHAHPELREALNEQASKFWHTG-NGYTNEPVLRLAKKLIDATF--ADRVFFCNSGAE 107 (406)
T ss_dssp TEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCSCCC-TTSCCHHHHHHHHHHHHHSS--CSEEEEESSHHH
T ss_pred CEEEeCCCCEEEECCCchhhcccCCCCHHHHHHHHHHHHhccccc-CCcCCHHHHHHHHHHHhhCC--CCeEEEeCcHHH
Confidence 899999999999999999999999999999999999998764433 45678889999999999984 569999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHH
Q psy8199 326 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIAR 405 (965)
Q Consensus 326 A~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (965)
|++.|+++++.++..+|.+++++||+.+++||++...+...++.+.+...+.+...++..+|.+
T Consensus 108 a~~~al~~~~~~~~~~~~~g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------- 171 (406)
T 4adb_A 108 ANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAAYN---------------- 171 (406)
T ss_dssp HHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCGGGTGGGCSCCSSEEEECTT----------------
T ss_pred HHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCcHHHhhccCCccccccCCCCCCCceEeCCC----------------
Confidence 9999999998887777777889999999999999999888888777666666666667666653
Q ss_pred HHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcc
Q psy8199 406 CAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPD 485 (965)
Q Consensus 406 ~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pD 485 (965)
|+++|+++++ +++++|+++| +++.+|++.++.+++++|.++|++||+++|+||+|+|||++|..++.+.+++.||
T Consensus 172 -d~~~l~~~l~---~~~~~v~~~p-~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d 246 (406)
T 4adb_A 172 -DINSASALID---DSTCAVIVEP-IQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGELYAYMHYGVTPD 246 (406)
T ss_dssp -CHHHHHTTCS---TTEEEEEECS-EETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCCS
T ss_pred -cHHHHHHHhc---CCeEEEEEeC-CcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhHHHHhcCCCCC
Confidence 6788888774 5789999999 7888888878999999999999999999999999999999998888888899999
Q ss_pred eeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Q psy8199 486 FLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKAL 565 (965)
Q Consensus 486 ivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L 565 (965)
++||||++++| +|+|++++++++++.+.. ..+++|+++++++++++.++|+.++++++.++++++++++.+.|
T Consensus 247 ~~t~sK~~~~G-~r~G~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l 319 (406)
T 4adb_A 247 LLTTAKALGGG-FPVGALLATEECARVMTV------GTHGTTYGGNPLASAVAGKVLELINTPEMLNGVKQRHDWFVERL 319 (406)
T ss_dssp EEEECGGGGTT-SCCEEEEECHHHHHTCCT------TSSCCSSTTCHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHH
T ss_pred EEEechhhcCC-CCeEEEEEcHHHHhhhcc------CCcCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 99999999977 899999999999988765 34778999999999999999998877788999999999999999
Q ss_pred Hcc-cCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecC-CEEEEeCCcccCHHHHHHHHHhhhc
Q psy8199 566 TSL-ITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG-NTVYLMPPYILNKNEIQHMTSAIFQ 643 (965)
Q Consensus 566 ~~l-~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~-~~lR~~p~~~~t~~~i~~~~~~l~~ 643 (965)
+++ ..++.+..+++.|.++.+.+. .+. ......+.+.|.++||++.+.+ +++|++|++.+++++++++++++.+
T Consensus 320 ~~~~~~~~~~~~~~~~g~~~~~~~~-~~~---~~~~~~~~~~l~~~gi~v~~~~~~~iRi~~~~~~~~e~i~~~~~~l~~ 395 (406)
T 4adb_A 320 NTINHRYGLFSEVRGLGLLIGCVLN-ADY---AGQAKQISQEAAKAGVMVLIAGGNVVRFAPALNVSEEEVTTGLDRFAA 395 (406)
T ss_dssp HHHHHHHCCEEEEEEETTEEEEEEC-TTT---TTCHHHHHHHHHHTTEECEESSTTEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCceEEEEEEEEEEEEEe-CCc---HHHHHHHHHHHHHCCcEEeecCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 876 334566778889999999886 210 1124568889999999999875 7999999999999999999999876
Q ss_pred ccc
Q psy8199 644 TFN 646 (965)
Q Consensus 644 ~~~ 646 (965)
.+.
T Consensus 396 ~l~ 398 (406)
T 4adb_A 396 ACE 398 (406)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
|
| >1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-41 Score=386.56 Aligned_cols=378 Identities=28% Similarity=0.443 Sum_probs=304.7
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCC-CeEEEcCChh
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKL-GHCFYGSDGA 324 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~-~~v~~~~sGs 324 (965)
+|+||.+|++|||+.++.|+.++||.+|++.+|+.++++...+.....++++...+|++.++++++.+. ++|+|++||+
T Consensus 33 ~~~~d~~g~~~id~~~~~~~~~lg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~~ 112 (426)
T 1sff_A 33 CRVWDVEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGS 112 (426)
T ss_dssp TEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHTTTCSCCCTTTEECHHHHHHHHHHHHHSSCSSCEEEEEESSHH
T ss_pred CEEEeCCCCEEEEcccChhhcccCCCCHHHHHHHHHHHHhCCCccccccCCHHHHHHHHHHHHhCCcccccEEEEeCchH
Confidence 899999999999999999999999999999999999987754332234667888999999999995224 7999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCc-CccchhcccCCCeeEecCCCCCCCCCCCChhHH
Q psy8199 325 SAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQ-SFKEIYTSLLNKTYIITTPDSRNINKGNSANEI 403 (965)
Q Consensus 325 eA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (965)
+|++.++++++.+. ++++|++++++|||+...++..++.. .++..+.+...++..+|.+..... ..
T Consensus 113 ~a~~~~~~~a~~~~------~~~~vi~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~v~~~~~~~~-------~~ 179 (426)
T 1sff_A 113 EAVENAVKIARAAT------KRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHG-------IS 179 (426)
T ss_dssp HHHHHHHHHHHHHH------TCCEEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGT-------BC
T ss_pred HHHHHHHHHHHHhh------CCCeEEEECCCcCCCchHhhhhcCCccccccccCCCCCCcEEeCCCccccc-------cc
Confidence 99999999776552 44589999999999987766665532 233334444445666766531110 01
Q ss_pred HHHHHHHHHHHHHhC--CCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccC
Q psy8199 404 ARCAIFDLEILLKKN--HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAE 481 (965)
Q Consensus 404 ~~~d~~~le~~l~~~--~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~ 481 (965)
...|+++|++++++. +.++++|++|| +++++|.+.++++++++|.++|++||+++|+||+|+||+++|.+++++.++
T Consensus 180 ~~~d~~~l~~~l~~~~~~~~~~~v~~~p-~~~ntG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~ 258 (426)
T 1sff_A 180 EDDAIASIHRIFKNDAAPEDIAAIVIEP-VQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMG 258 (426)
T ss_dssp HHHHHHHHHHHHHHTCCGGGEEEEEECS-BCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTT
T ss_pred hHHHHHHHHHHHHhccCCCceEEEEEec-ccCCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhccCcccchhhhhhcC
Confidence 124789999988742 24689999999 777789889999999999999999999999999999999999877778889
Q ss_pred CCcceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q psy8199 482 IWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKI 561 (965)
Q Consensus 482 ~~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l 561 (965)
+.||+++|||++++| +|+|++++++++++.+.. ..+.+|+++|+++++++.++|+.+.++++.++++++++++
T Consensus 259 ~~~di~s~sK~~~~G-lriG~~~~~~~~~~~l~~------~~~~~~~~~~~~~~~a~~aal~~~~~~~~~~~~~~~~~~l 331 (426)
T 1sff_A 259 VAPDLTTFAKSIAGG-FPLAGVTGRAEVMDAVAP------GGLGGTYAGNPIACVAALEVLKVFEQENLLQKANDLGQKL 331 (426)
T ss_dssp SCCSEEEECGGGGTS-SCCEEEEEEHHHHTTSCT------TSBCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred CCCCEEEEcccccCC-CceEEEEEcHHHHhhhcc------CCcCcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 899999999999987 899999999999887753 2356889999999999999999988778899999999999
Q ss_pred HHHHHccc-CCCceeeeeceeEEEEEEEeecCcc---chhhHHHHHHHHHHHcCcEEeecC---CEEEEeCCcccCHHHH
Q psy8199 562 TKALTSLI-THPKIINFRQKGMIWAFDVIIEDPE---QIETFSKKFFVAALKNELLLRPIG---NTVYLMPPYILNKNEI 634 (965)
Q Consensus 562 ~~~L~~l~-~~~~i~~v~g~G~~~~i~~~~~~~~---~~~~~~~~~~~~l~~~Gi~~~~~~---~~lR~~p~~~~t~~~i 634 (965)
+++|+++. ..+.+..+++.|.|+++++. .... +.......+.+.|.++||++.|+. +++||++++.++++++
T Consensus 332 ~~~l~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~iRi~~~~~~~~~~i 410 (426)
T 1sff_A 332 KDGLLAIAEKHPEIGDVRGLGAMIAIELF-EDGDHNKPDAKLTAEIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQI 410 (426)
T ss_dssp HHHHHHHHHTCTTEEEEEEETTEEEEEEB-GGGCTTSBCHHHHHHHHHHHHHTTEECEEESTTSCEEEECCCTTCCHHHH
T ss_pred HHHHHHHHHhCCCeEEEEEEEEEEEEEEe-cCccccCCChHHHHHHHHHHHHCCcEEecCCCCCCEEEEECCccCCHHHH
Confidence 99998873 46666677888999999885 1100 111224568888999999999864 7999999999999999
Q ss_pred HHHHHhhhccc
Q psy8199 635 QHMTSAIFQTF 645 (965)
Q Consensus 635 ~~~~~~l~~~~ 645 (965)
+++++++.+.+
T Consensus 411 ~~~~~~l~~~l 421 (426)
T 1sff_A 411 RQGLEIISQCF 421 (426)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999987654
|
| >1v9f_A Ribosomal large subunit pseudouridine synthase D; RNA binding, lyase; 1.70A {Escherichia coli} SCOP: d.265.1.3 PDB: 2ist_A 1qyu_A 1prz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-42 Score=372.91 Aligned_cols=228 Identities=43% Similarity=0.699 Sum_probs=178.6
Q ss_pred cccCCEEEEEcCCCCCCCCcccccCCCccEEEecCcEEEEECCCCCeeeeCCCCCcccHHHHHHHHCCcccCCCCccccc
Q psy8199 2 IISGYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVH 81 (965)
Q Consensus 2 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~e~~~~lv~nKP~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~ 81 (965)
|.+||.|.|..+.... .........++|+|||++|+|+|||+|++||+..+....++.+.+..+++.....+++++||
T Consensus 58 v~~gD~I~v~~~~~~~--~~~~~~~~~~~ilyed~~~lvvnKP~G~~~~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~vh 135 (325)
T 1v9f_A 58 VLGGEQVAINAEIEEE--ARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVH 135 (325)
T ss_dssp --------------------CCCCCCCCCEEEECSSEEEEEECSSCCSSCBTTBSSSSHHHHHHHHCGGGGGSGGGGBCC
T ss_pred eCCCCEEEEecccccc--ccCCcccCCCeEEEECCCEEEEECCCCCeEecCCCCCCccHHHHHHHHHHhcCCCCceeeec
Confidence 4556666554322110 01112334578999999999999999999999877666789998877765433345789999
Q ss_pred cCCCCCceEEEeEeCHHHHHHHHHHHHcCCcCeEEEEEEcCccCCCceEeeccccCCCCCeeEEEccCCCCcceEEEEEE
Q psy8199 82 RLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYER 161 (965)
Q Consensus 82 RLD~~tsGlll~a~~~~~~~~l~~~~~~~~~~K~Y~a~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~ 161 (965)
|||++||||||||||+++++.|+++|++++++|+|+|+|.|.+++++.++.++..+......+.+.. +++++.|.|++
T Consensus 136 RLD~~TSGlll~ak~~~~~~~l~~~~~~~~v~K~Y~a~v~G~~~~~g~i~~~i~~~~~~~~~~~v~~--~gk~a~t~~~v 213 (325)
T 1v9f_A 136 RLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISRHPTKRTHMAVHP--MGKPAVTHYRI 213 (325)
T ss_dssp CCCTTCEEEEEEESSHHHHHHHHHHHHTTCSEEEEEEEEESCCCCCEEEECCEEECSSCTTCEEECT--TSBCCEEEEEE
T ss_pred CCCCCCeeEEEEEcCHHHHHHHHHHHHcCCeeEEEEEEEeCCCCCCCEEeeeeeECCCCCEEEEECC--CCeeEEEEEEE
Confidence 9999999999999999999999999999999999999999998888899999988776666666653 78999999999
Q ss_pred eEEeeccCCcEEEEEEEeCCCcccHHHHHHHHhCCceecCCCCCccc--cc---------cccccccccccccccccccc
Q psy8199 162 LATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGKKY--SK---------SLIFNRQALHAYKLGLIHPK 230 (965)
Q Consensus 162 ~~~~~~~~~~~s~~~~~~~tGr~hQIR~~~~~~g~pi~gD~~~~~~~--~~---------~~~~~~~~Lha~~l~f~~p~ 230 (965)
+... .++|+++|+|.|||+||||+||+++||||+||.+||... .. ...+.+++||++++.|.||.
T Consensus 214 l~~~----~~~slv~~~l~TGR~HQIRvhla~lG~PI~GD~~Yg~~~~~~~~~~~~~~~~~~~~~r~~LHA~~L~f~hP~ 289 (325)
T 1v9f_A 214 MEHF----RVHTRLRLRLETGRTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPI 289 (325)
T ss_dssp EEEC----SSEEEEEEEESCCCTTHHHHHHHHTTCCBTTCTTTTCCCCCCTTCCHHHHHHHHHCCSCSEEEEEEEEECTT
T ss_pred eEEc----CCeEEEEEEECCCCcHHHHHHHHhCCCceeCChhhCCccccccccchhhhhhccCCcChhhheeeeEeeCCC
Confidence 9875 578999999999999999999999999999999999651 10 11246899999999999998
Q ss_pred Ccccccc
Q psy8199 231 NNLKLKW 237 (965)
Q Consensus 231 ~~~~~~~ 237 (965)
++....+
T Consensus 290 ~~~~~~~ 296 (325)
T 1v9f_A 290 SGIEMEW 296 (325)
T ss_dssp TCCEEEE
T ss_pred CCCEEEE
Confidence 8766543
|
| >2i82_A Ribosomal large subunit pseudouridine synthase A; lyase/RNA complex; HET: FOU; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-42 Score=349.63 Aligned_cols=202 Identities=33% Similarity=0.527 Sum_probs=170.8
Q ss_pred ccEEEecCcEEEEECCCCCeeeeCCC-CCcccHHHHHHHHCCcccCCCCccccccCCCCCceEEEeEeCHHHHHHHHHHH
Q psy8199 29 LDIIYEDNEIIILNKSAGLVVHPAIG-NLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQL 107 (965)
Q Consensus 29 ~~i~~e~~~~lv~nKP~G~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~v~RLD~~tsGlll~a~~~~~~~~l~~~~ 107 (965)
++|+|||++|+|+|||+|++||++.+ ....++.+.+...++ ++.+|||||++||||||||||++++++|+++|
T Consensus 12 ~~ilyed~~~lvvnKP~G~~~~~~~~~~~~~tl~~~l~~~~~------~~~~vhRLD~~TSGlll~ak~~~~~~~l~~~f 85 (217)
T 2i82_A 12 LVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYP------QAESVHRLDMATSGVIVVALTKAAERELKRQF 85 (217)
T ss_dssp CCEEEECSSEEEEEECTTSBSSCCSSGGGCCBHHHHHHHHCT------TCEESSCCCTTCEEEEEEESSHHHHHHHHHHH
T ss_pred ceEEEECCCEEEEECCCCCeEeCCCCCCchhHHHHHHHHHCC------CCceeecCCCCCeEEEEEEeCHHHHHHHHHHH
Confidence 78999999999999999999998764 345689998877764 67899999999999999999999999999999
Q ss_pred HcCCcCeEEEEEEcCccCCC-ceEeeccccCCCCCeeEEEccCCCCcceEEEEEEeEEeeccCCc-EEEEEEEeCCCccc
Q psy8199 108 KMHIVQRKYLAMVWGIPKLN-GMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKH-ISLIRCNLKTGRTH 185 (965)
Q Consensus 108 ~~~~~~K~Y~a~v~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~s~~~~~~~tGr~h 185 (965)
++++++|+|+|+|.|.++++ +.++.++..+........+.. .+++.+.|.|+++... .+ .|+++|+|.|||+|
T Consensus 86 ~~~~v~K~Y~a~v~G~~~~~~g~i~~~l~~~~~~~~~~~v~~-~~gk~a~t~~~vl~~~----~~~~slv~~~l~TGR~H 160 (217)
T 2i82_A 86 REREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCY-ETGKPAQTEYEVVEYA----ADNTARVVLKPITGRSH 160 (217)
T ss_dssp HTTCSEEEEEEEEESCCSSSEEEEECCEEECGGGTTCEEECT-TTCBCCEEEEEEEEEE----TTTEEEEEEEESSCCTT
T ss_pred HhCCeeEEEEEEEecccCCCCcEEecceeecCCCCcEEEEeC-CCCcEEEEEEEEEEEC----CCCeEEEEEEECCCCcH
Confidence 99999999999999998754 778888876654444444442 4789999999999875 34 89999999999999
Q ss_pred HHHHHHHHhCCceecCCCCCcccccccccccccccccccccccccCcccccccccCCCc
Q psy8199 186 QIRVHMQWLGHGIVGDNLYGKKYSKSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDD 244 (965)
Q Consensus 186 QIR~~~~~~g~pi~gD~~~~~~~~~~~~~~~~~Lha~~l~f~~p~~~~~~~~~~~~p~~ 244 (965)
|||+||+++||||+||.+||..... ....+++||++++.|.||.++....+ ..|++
T Consensus 161 QIR~hla~lG~PIvGD~~Yg~~~~~-~~~~r~~LHa~~l~f~hP~~~~~~~~--~ap~p 216 (217)
T 2i82_A 161 QLRVHMLALGHPILGDRFYASPEAR-AMAPRLLLHAEMLTITHPAYGNSMTF--KAPAD 216 (217)
T ss_dssp HHHHHHHHTTCCBTTCTTTSCHHHH-HTCSSCCEEEEEEEEECTTTCCEEEE--ECCCC
T ss_pred HHHHHHHHCCCcEECccccCCcccc-CCCCCceeeeeEeEEcCCCCCCEEEE--EecCC
Confidence 9999999999999999999965321 12368899999999999998876654 35543
|
| >2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-40 Score=376.65 Aligned_cols=361 Identities=27% Similarity=0.485 Sum_probs=296.8
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhH
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGAS 325 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGse 325 (965)
+|+||.+|++|+|+.+++|++++||.+|++.+|+.++++...+.+ ..++.+...+++++++++++ .++++|++||++
T Consensus 32 ~~~~d~~g~~~ld~~~~~~~~~lg~~~~~v~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~la~~~g--~~~v~~~~gg~~ 108 (397)
T 2ord_A 32 SWIYDEKGNAYLDFTSGIAVNVLGHSHPRLVEAIKDQAEKLIHCS-NLFWNRPQMELAELLSKNTF--GGKVFFANTGTE 108 (397)
T ss_dssp TEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCSCCC-TTSEEHHHHHHHHHHHHTTT--SCEEEEESSHHH
T ss_pred CEEEECCCCEEEECCccccccccCCCCHHHHHHHHHHHHhcccCc-cccCCHHHHHHHHHHHHhcC--CCeEEEeCCHHH
Confidence 899999999999999999999999999999999999998764432 23567889999999999984 689999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHH
Q psy8199 326 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIAR 405 (965)
Q Consensus 326 A~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (965)
|++.|+++++.++.. +.+++++||+++++|||....++...+...+...+.+...++..+|.
T Consensus 109 a~~~al~~~~~~~~~-~~~~~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~----------------- 170 (397)
T 2ord_A 109 ANEAAIKIARKYGKK-KSEKKYRILSAHNSFHGRTLGSLTATGQPKYQKPFEPLVPGFEYFEF----------------- 170 (397)
T ss_dssp HHHHHHHHHHHHHHH-HCTTCCEEEEEBTCCCCSSHHHHHHSBCHHHHGGGCSCCTTEEEECT-----------------
T ss_pred HHHHHHHHHHHHhhc-CCCCCceEEEEcCCcCCCchhhhhccCChhhccccCCCCCCeeEecC-----------------
Confidence 999999988765322 22356789999999999987666555543333334444445555554
Q ss_pred HHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcc
Q psy8199 406 CAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPD 485 (965)
Q Consensus 406 ~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pD 485 (965)
+|+++|+++++ +++++|+++| ++|++|.+.++.+++++|.++|++||+++|+||+|+||+++|..+..+.+++.||
T Consensus 171 ~d~~~l~~~l~---~~~~~v~~~~-~~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d 246 (397)
T 2ord_A 171 NNVEDLRRKMS---EDVCAVFLEP-IQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGKLFAYQKYGVVPD 246 (397)
T ss_dssp TCHHHHHHHCC---TTEEEEEECS-EECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSHHHHHTCCCS
T ss_pred CCHHHHHHHhh---cCeEEEEEec-ccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccCccchhhhhhCCCCC
Confidence 26788888875 4689999999 9999998777899999999999999999999999999999887666677788899
Q ss_pred eeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Q psy8199 486 FLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKAL 565 (965)
Q Consensus 486 ivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L 565 (965)
+++|||++++| +|+|+++++++++ .+.. ..++.|+++|+++++++.++|+.+.++++.++++++++++.+.|
T Consensus 247 ~~s~sK~~~~G-~r~G~~~~~~~~~-~l~~------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L 318 (397)
T 2ord_A 247 VLTTAKGLGGG-VPIGAVIVNERAN-VLEP------GDHGTTFGGNPLACRAGVTVIKELTKEGFLEEVEEKGNYLMKKL 318 (397)
T ss_dssp EEEECGGGGTT-SCCEEEEECSTTC-CCCT------TSSCCSSTTCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHH
T ss_pred eeeeccccCCC-cCeEEEEEchHhc-ccCC------CCcCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 99999999987 7999999998876 5542 23667899999999999999998877778999999999999999
Q ss_pred Hccc-CCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecC-CEEEEeCCcccCHHHHHHHHHhhhc
Q psy8199 566 TSLI-THPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG-NTVYLMPPYILNKNEIQHMTSAIFQ 643 (965)
Q Consensus 566 ~~l~-~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~-~~lR~~p~~~~t~~~i~~~~~~l~~ 643 (965)
+++. ..+.+..+++.|.++.+++. .+ .....+.+.|.++||++.+.+ +.+||+|++..++++++++++++.+
T Consensus 319 ~~~~~~~~~~~~~~~~g~~~~~~~~-~~-----~~~~~l~~~l~~~gi~v~~~~~~~iRis~~~~~~~e~i~~~~~~l~~ 392 (397)
T 2ord_A 319 QEMKEEYDVVADVRGMGLMIGIQFR-EE-----VSNREVATKCFENKLLVVPAGNNTIRFLPPLTVEYGEIDLAVETLKK 392 (397)
T ss_dssp HHHHHHCTTEEEEEEETTEEEEEEC-TT-----SCHHHHHHHHHHTTEECEEETTTEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHhCCceEEEEEEeEEEEEEEC-Ch-----HHHHHHHHHHHHCCCEEccCCCCEEEEECCcCCCHHHHHHHHHHHHH
Confidence 8763 45655567888999988875 11 114467888889999999874 7999999999999999999998876
Q ss_pred cc
Q psy8199 644 TF 645 (965)
Q Consensus 644 ~~ 645 (965)
.+
T Consensus 393 ~l 394 (397)
T 2ord_A 393 VL 394 (397)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >3t7v_A Methylornithine synthase PYLB; TIM-barrel fold, mutase, [4Fe-4S]-cluster, SAM, lysine, transferase; HET: SAM MD0; 1.50A {Methanosarcina barkeri} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-40 Score=370.90 Aligned_cols=318 Identities=18% Similarity=0.304 Sum_probs=273.3
Q ss_pred CHHHHHHHHHhhhc-ccccHHHHHHhcCC----CchhHHHHHHHHHHHhcCCCeEEEeEeEeeccCCCCCCCCCCCCCCc
Q psy8199 630 NKNEIQHMTSAIFQ-TFNELDEVINLFNL----PFNDLLFRAQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTH 704 (965)
Q Consensus 630 t~~~i~~~~~~l~~-~~~~~~e~l~l~~~----~~~~l~~~a~~~~~~~~~g~~~~~~~~i~~~s~~C~~~C~fC~~~~~ 704 (965)
+...++++++++.+ ...+.++++.|++. ++..|..+|+.+|++++ |+.++++.+|++ |++|+++|.||++++.
T Consensus 6 ~~~~~~~i~~k~~~~~~l~~~e~~~l~~~~~~~~~~~L~~~A~~~r~~~~-g~~v~~~~~i~~-t~~C~~~C~fC~~~~~ 83 (350)
T 3t7v_A 6 ALDEFDSLGDKVIEGYQLTDNDLRTLLSLESKEGLERLYSAARKVRDHYF-GNRVFLNCFIYF-STYCKNQCSFCYYNCR 83 (350)
T ss_dssp ------CHHHHHHTTCCCCHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHH-TTEEEEEEEEEE-ECCCCCCCTTCTTCTT
T ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHhcCCChhHHHHHHHHHHHHHHHHC-CCEEEEEEeeec-CCCcCCCCCcCCCcCc
Confidence 34445667777654 57889999999965 34678899999988888 899999999999 9999999999999875
Q ss_pred CCCCcccccCCCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHh-cCcEeEEecCCCCHHHHHHHHH
Q psy8199 705 YNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKK 783 (965)
Q Consensus 705 ~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~-~~~~i~~~~~~~~~e~l~~Lk~ 783 (965)
. ...+|+ +++++|+++++++.+.|+++++|++|++|....+.+++.++++.+++ .++.++++.+.++++.++.|++
T Consensus 84 ~--~~~~~~-ls~eei~~~~~~~~~~G~~~i~l~gGe~p~~~~~~~~~~~l~~~ik~~~~i~i~~s~g~~~~e~l~~L~~ 160 (350)
T 3t7v_A 84 N--EINRYR-LTMEEIKETCKTLKGAGFHMVDLTMGEDPYYYEDPNRFVELVQIVKEELGLPIMISPGLMDNATLLKARE 160 (350)
T ss_dssp S--CCCCCB-CCHHHHHHHHHHHTTSCCSEEEEEECCCHHHHHSTHHHHHHHHHHHHHHCSCEEEECSSCCHHHHHHHHH
T ss_pred C--CCCcee-CCHHHHHHHHHHHHHCCCCEEEEeeCCCCccccCHHHHHHHHHHHHhhcCceEEEeCCCCCHHHHHHHHH
Confidence 3 344566 89999999999999999999999888755322246889999999986 5788999999999999999999
Q ss_pred hCCCeEeccCCC-CHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeecc
Q psy8199 784 VGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINN 862 (965)
Q Consensus 784 aG~~~i~i~~es-~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~ 862 (965)
+|++++.+++|| ++++++++++++++++++++++.++++|+++++++|+|+|||.+|+.++++++++++ ++.+++++
T Consensus 161 aG~~~i~i~lEt~~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~e~~~~~l~~l~~l~--~~~v~~~~ 238 (350)
T 3t7v_A 161 KGANFLALYQETYDTELYRKLRVGQSFDGRVNARRFAKQQGYCVEDGILTGVGNDIESTILSLRGMSTND--PDMVRVMT 238 (350)
T ss_dssp TTEEEEECCCBCSCHHHHHHHSTTCCHHHHHHHHHHHHHHTCEEEEEEEESSSCCHHHHHHHHHHHHHTC--CSEEEEEE
T ss_pred cCCCEEEEeeecCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeEccceEeecCCCHHHHHHHHHHHHhCC--CCEEEecc
Confidence 999999999999 899999999999999999999999999999999999999999999999999999999 89999999
Q ss_pred ccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEee---CCc----cccC---
Q psy8199 863 LVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFY---GDK----LLTT--- 932 (965)
Q Consensus 863 ~~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~---g~~----~~t~--- 932 (965)
|+|.||||+++.++.+.+++++++|++|+++|+. +|+++|...+.+.++.+|.+|||+++. .++ +...
T Consensus 239 f~p~~gT~l~~~~~~~~~e~l~~ia~~Rl~lp~~--~I~a~~~~~g~~~~~~~l~~Gan~~~~~~~~~~~~ag~~~~~~~ 316 (350)
T 3t7v_A 239 FLPQEGTPLEGFRDKSNLSELKIISVLRLMFPKR--LIPASLDLEGIDGMVLRLNAGANIVTSILPPDSQLEGVANYDRD 316 (350)
T ss_dssp CCCCTTSTTTTCCCCCCCCHHHHHHHHHHHSTTS--BCEEEHHHHHHHHHHHHHHTTCCEEEEECCSSCCCCCSSCTTTT
T ss_pred eeeCCCCcCccCCCCChHHHHHHHHHHHHhCCCc--CccccccccChhHHHHHHhcCCceecCCCCCCCCCCCCCCCccc
Confidence 9999999999998999999999999999999985 778889888888899999999997552 221 1111
Q ss_pred ---CCCCChhhHHHHHHcCCCcchhhh
Q psy8199 933 ---DNTKTNDDSKLLKKLGINTRNIKI 956 (965)
Q Consensus 933 ---~~~~~~~~~~~~~~~g~~~~~~~~ 956 (965)
.+.+.++..++|+++|+.|++|+.
T Consensus 317 ~~~~~~~~~~~~~~i~~~G~~~~~r~~ 343 (350)
T 3t7v_A 317 LEERDRDIKSVVRRLEIMGMKPARQAD 343 (350)
T ss_dssp CSSCCCCHHHHHHHHHHHTCEECCHHH
T ss_pred chhccCCHHHHHHHHHHcCCccccHHH
Confidence 124678999999999999999975
|
| >1r30_A Biotin synthase; SAM radical protein, TIM barrel, FES cluster, transferase; HET: SAM DTB; 3.40A {Escherichia coli} SCOP: c.1.28.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-40 Score=366.00 Aligned_cols=311 Identities=56% Similarity=0.981 Sum_probs=279.0
Q ss_pred ccHHHHHHhcCCCchhHHHHHHHHHHHhcCCCeEEEeEeEeeccCCCCCCCCCCCCCCcCCCCcccccCCCHHHHHHHHH
Q psy8199 646 NELDEVINLFNLPFNDLLFRAQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQ 725 (965)
Q Consensus 646 ~~~~e~l~l~~~~~~~l~~~a~~~~~~~~~g~~~~~~~~i~~~s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~ 725 (965)
.+.+++..|++.++.+|+..|+++++++|+|+.+.++..+++.|++|+++|.||.++..+.....+++.+++++|+++++
T Consensus 30 ls~~e~~~l~~~~~~~L~~~A~~~~~~~~~~~~v~~~~~i~i~t~~C~~~C~yC~~~~~~~~~~~~~~~~s~eei~~~~~ 109 (369)
T 1r30_A 30 WTLSQVTELFEKPLLDLLFEAQQVHRQHFDPRQVQVSTLLSIKTGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLESAR 109 (369)
T ss_dssp CCSTTTHHHHHSCHHHHHHHHHHHHHHHSCTTCCEEEEEEEEECSCBSSCCSSCSCBTTSCTTCCCCCCCCHHHHHHHHH
T ss_pred CCHHHHHHHHhccHHHHHHHHHHHHHHhcCCCEEEEEEEEEEECCCCcccCccCCCCCcCCCCCcccccCCHHHHHHHHH
Confidence 44455666666678899999999999998678899999999769999999999998875433334566689999999999
Q ss_pred HHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHhcCcEeEEecCCCCHHHHHHHHHhCCCeEeccCCCCHHHHhcccC
Q psy8199 726 KAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIIS 805 (965)
Q Consensus 726 ~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~~es~~~~~~~i~~ 805 (965)
.+.+.|++.|+|++|+..+...+.+++.++++.+++.++.+++++|.++++.++.|+++|++++++++||+++.++++++
T Consensus 110 ~~~~~g~~~i~~~gg~~~p~~~~~~~l~~ll~~ik~~g~~i~~t~G~l~~e~l~~L~~aGvd~v~i~les~~e~~~~i~~ 189 (369)
T 1r30_A 110 KAKAAGSTRFCMGAAWKNPHERDMPYLEQMVQGVKAMGLEACMTLGTLSESQAQRLANAGLDYYNHNLDTSPEFYGNIIT 189 (369)
T ss_dssp HHHHTTCSEEEEEECCSSCCTTTHHHHHHHHHHHHHTTSEEEEECSSCCHHHHHHHHHHCCCEEECCCBSCHHHHHHHCC
T ss_pred HHHHcCCcEEEEEeCCCCCCcCCHHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHCCCCEEeecCcCCHHHHHHhCC
Confidence 99999999999988752223356899999999999989999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCCCCCCCHHHHHHH
Q psy8199 806 TRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRT 885 (965)
Q Consensus 806 ~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~~~~~~~~~~~~~ 885 (965)
.+++++++++++.++++|+.+++++|+|++||.+++.++++++++++..++.++++.|+|.|||||++.++++.++++++
T Consensus 190 ~~~~~~~l~~i~~a~~~Gi~v~~~~I~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~l~p~~gT~l~~~~~~~~~~~~~~ 269 (369)
T 1r30_A 190 TRTYQERLDTLEKVRDAGIKVCSGGIVGLGETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAFDFIRT 269 (369)
T ss_dssp SSCHHHHHHHHHHHHHHHCEEECCEEECSSCCHHHHHHHHHHHHSSSSCCSEEEEEECCCCTTSTTSSCCCCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCeeeeeeEeeCCCCHHHHHHHHHHHHhhcCCCCEEEeeeeeecCCCcCCCCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999996336799999999999999998888999999999
Q ss_pred HHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeCCccccCCCCCChhhHHHHHHcCCCcchhhh
Q psy8199 886 IAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLLKKLGINTRNIKI 956 (965)
Q Consensus 886 ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~~~~~g~~~~~~~~ 956 (965)
++++|+++|+..++++++|..++.+.+..++.+|||+++.|++++|++|.+.+++.++++++|+.|.++..
T Consensus 270 ~~~~r~~l~~~~i~i~~~~~~l~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~i~~~g~~~~~~~~ 340 (369)
T 1r30_A 270 IAVARIMMPTSYVRLSAGREQMNEQTQAMCFMAGANSIFYGCKLLTTPNPEEDKDLQLFRKLGLNPQQTAV 340 (369)
T ss_dssp HHHHHHHCTTSEEEEESSGGGSCHHHHHHHHHHTCCEEECSSBSSSSBCCCHHHHHHHHHHTTCCSCCCC-
T ss_pred HHHHHHhCCCCceEeecchhhcChHHHHHHhhCCCceEEeCCeeeCCCCCCHHHHHHHHHHcCCCeecccc
Confidence 99999999998899999999888888899999999999999999999998899999999999999987764
|
| >1v9k_A Ribosomal large subunit pseudouridine synthase C; pseudouridine syntase, RNA binding, lyase; 2.00A {Escherichia coli} SCOP: d.265.1.3 PDB: 1xpi_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-40 Score=342.50 Aligned_cols=198 Identities=35% Similarity=0.492 Sum_probs=164.9
Q ss_pred cEEEecCcEEEEECCCCCeeeeCCCCCcccHHHHHHHHCCcccCCCCccccccCCCCCceEEEeEeCHHHHHHHHHHHHc
Q psy8199 30 DIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKM 109 (965)
Q Consensus 30 ~i~~e~~~~lv~nKP~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~RLD~~tsGlll~a~~~~~~~~l~~~~~~ 109 (965)
+|+|||++|+|+|||+|++||++.+. ..++.+.+...++. ...+++|||||++||||||||||+++++.|+++|++
T Consensus 3 ~Ilyed~~~lvvnKP~G~~~~~~~~~-~~~l~~~l~~~~~~---~~~~~~VhRLD~~TSGlll~ak~~~~~~~l~~~~~~ 78 (228)
T 1v9k_A 3 VIMYEDDHILVLNKPSGTAVHGGSGL-SFGVIEGLRALRPE---ARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLRE 78 (228)
T ss_dssp CEEEECSSEEEEEECTTSCSSCCSSS-BCCHHHHHHHHSTT---CSCCEESSCCCTTCEEEEEEESSHHHHHHHHHHHHT
T ss_pred CEEEECCCEEEEECCCCCeEecCCCh-HHHHHHHHHHHcCC---CCccceEecCCCCCeEEEEEEeCHHHHHHHHHHHHh
Confidence 58999999999999999999987653 56788887766541 236789999999999999999999999999999999
Q ss_pred CCcCeEEEEEEcCccCC-CceEeeccccCCCC--CeeEEEccCCCCcceEEEEEEeEEeeccCCcEEEEEEEeCCCcccH
Q psy8199 110 HIVQRKYLAMVWGIPKL-NGMINAAIMRNPHN--RIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQ 186 (965)
Q Consensus 110 ~~~~K~Y~a~v~g~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~s~~~~~~~tGr~hQ 186 (965)
++++|+|+|+|.|.+++ ++.++.++..+... ...+.+. .+++.+.|.|+++... .+.|+++|+|.|||+||
T Consensus 79 ~~v~K~Y~a~v~G~~~~~~~~i~~~l~~~~~~~g~~~~~~~--~~gk~a~t~~~vl~~~----~~~slv~~~l~TGR~HQ 152 (228)
T 1v9k_A 79 KGMQKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVS--QEGKPSETRFKVEERY----AFATLVRCSPVTGRTHQ 152 (228)
T ss_dssp TCSEEEEEEEEESCCCTTCCEECCCEEEEECTTSCEEEEEC--TTSBCCCEEEEEEEEC----SSEEEEEEEESSCCTTH
T ss_pred CCeeEEEEEEEecccCCCCCEEeCceeccCCCCCceEEEEC--CCCcEEEEEEEEEEEc----CCeEEEEEEECCCCchH
Confidence 99999999999999875 47788888765322 2233332 4789999999999875 66899999999999999
Q ss_pred HHHHHHHhCCceecCCCCCccc-c-----cccccccccccccccccccccCcccccc
Q psy8199 187 IRVHMQWLGHGIVGDNLYGKKY-S-----KSLIFNRQALHAYKLGLIHPKNNLKLKW 237 (965)
Q Consensus 187 IR~~~~~~g~pi~gD~~~~~~~-~-----~~~~~~~~~Lha~~l~f~~p~~~~~~~~ 237 (965)
||+||+++||||+||.+||... . ......+++||++++.|.||.++....+
T Consensus 153 IR~hla~lG~PI~gD~~YG~~~~~~~~~~~~~~~~r~~LHa~~l~f~hP~t~~~~~~ 209 (228)
T 1v9k_A 153 IRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRI 209 (228)
T ss_dssp HHHHHHHTTCCBTTCTTTSCHHHHHHHHHTTCCCCSCCEEEEEEEEECTTTCCEEEE
T ss_pred HHHHHHHCCCcEecCcccCCccccchhhcccCCCCChhhccceeEeeCCCCCCEEEE
Confidence 9999999999999999999631 1 1123568999999999999988776554
|
| >1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-38 Score=362.18 Aligned_cols=355 Identities=27% Similarity=0.446 Sum_probs=292.4
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhH
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGAS 325 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGse 325 (965)
+|+||.+|+.|||+.++.|++++||.+|++.+|+.++++...+.+ ..+..+...+++++++++++.+.+++++++||++
T Consensus 37 ~~~~d~~g~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~la~~~~~~~~~v~~~~gg~~ 115 (395)
T 1vef_A 37 ARVWDAEGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETLMAMP-QTLPTPMRGEFYRTLTAILPPELNRVFPVNSGTE 115 (395)
T ss_dssp TEEEETTSCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCCCCC-TTSCCHHHHHHHHHHHHTSCTTEEEEEEESSHHH
T ss_pred CEEEeCCCCEEEEccCccccccCCCCCHHHHHHHHHHHHhCCCCc-cccCCHHHHHHHHHHHHhcCCCcCEEEEcCcHHH
Confidence 899999999999999999999999999999999999998754432 2356788999999999999766789999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHH
Q psy8199 326 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIAR 405 (965)
Q Consensus 326 A~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (965)
|++.++++++.+ .++++||+++++||+....++...+...+...+.+...++..++.
T Consensus 116 a~~~al~~~~~~------~~~~~vi~~~~~y~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~----------------- 172 (395)
T 1vef_A 116 ANEAALKFARAH------TGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPY----------------- 172 (395)
T ss_dssp HHHHHHHHHHHH------HSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEEECT-----------------
T ss_pred HHHHHHHHHHHH------hCCCeEEEEcCCcCCCchhhhhhcCCcccccccCCCCCCeeEeCC-----------------
Confidence 999999987644 256789999999999877666655533222223333334444443
Q ss_pred HHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcc
Q psy8199 406 CAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPD 485 (965)
Q Consensus 406 ~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pD 485 (965)
.|+++|+++++ +++++|+++| +++++|.+.++++++++|.++|++||+++|+||+|+||++.|..+.++.+++.||
T Consensus 173 ~d~~~l~~~i~---~~~~~v~~~~-~~~~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~d 248 (395)
T 1vef_A 173 NDVEALKRAVD---EETAAVILEP-VQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFGIVPD 248 (395)
T ss_dssp TCHHHHHHHCC---TTEEEEEECS-EETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCS
T ss_pred CcHHHHHHHhc---cCEEEEEEeC-ccCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCccCCchhHhhhcCCCCC
Confidence 36788888885 4689999999 8889999889999999999999999999999999999998887766777788899
Q ss_pred eeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Q psy8199 486 FLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKAL 565 (965)
Q Consensus 486 ivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L 565 (965)
+++|||++++| +|+|++++++++++.+.. ..++++++.|+++++++.++|+.+.++++.++++++++++.+.|
T Consensus 249 ~~s~sK~~~~g-~~~G~~~~~~~~~~~l~~------~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~l~~~l 321 (395)
T 1vef_A 249 ILTLAKALGGG-VPLGVAVMREEVARSMPK------GGHGTTFGGNPLAMAAGVAAIRYLERTRLWERAAELGPWFMEKL 321 (395)
T ss_dssp EEEECGGGGTT-SSCEEEEEEHHHHHTSCT------TSSCCSSTTCHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred EEEEcccccCC-CceEEEEehHHHHhhhcc------CCcCCCcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 99999999987 899999999998887754 13567889999999999999998876678899999999999999
Q ss_pred HcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHH-HcCcEEeecC-CEEEEeCCcccCHHHHHHHHHhhhc
Q psy8199 566 TSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAAL-KNELLLRPIG-NTVYLMPPYILNKNEIQHMTSAIFQ 643 (965)
Q Consensus 566 ~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~~-~~lR~~p~~~~t~~~i~~~~~~l~~ 643 (965)
+++.. +.+..+++.|.++.+.+. .+ ...+.+.|. ++||++.+.+ +++||++++..++++++++++++.+
T Consensus 322 ~~~~~-~~~~~~~~~g~~~~~~~~-~~-------~~~l~~~l~~~~gi~v~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~ 392 (395)
T 1vef_A 322 RAIPS-PKIREVRGMGLMVGLELK-EK-------AAPYIARLEKEHRVLALQAGPTVIRFLPPLVIEKEDLERVVEAVRA 392 (395)
T ss_dssp HTSCC-TTEEEEEEETTEEEEEES-SC-------SHHHHHHHHHHHCEECEESSTTEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred HHhhc-CceEEEEEEEEEEEEEEc-Ch-------HHHHHHHHHHHCCeEEecCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 87632 444556778888888875 11 345778888 9999999864 7999999999999999999998865
Q ss_pred c
Q psy8199 644 T 644 (965)
Q Consensus 644 ~ 644 (965)
.
T Consensus 393 ~ 393 (395)
T 1vef_A 393 V 393 (395)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-37 Score=341.30 Aligned_cols=313 Identities=20% Similarity=0.316 Sum_probs=272.1
Q ss_pred HHHHHHhhhcccccHHHHHHhcCCC----chhHHHHHHHHHHHhcCCCeEEEeEeEeeccCCCCCCCCCCCCCCcCCCCc
Q psy8199 634 IQHMTSAIFQTFNELDEVINLFNLP----FNDLLFRAQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHYNTEI 709 (965)
Q Consensus 634 i~~~~~~l~~~~~~~~e~l~l~~~~----~~~l~~~a~~~~~~~~~g~~~~~~~~i~~~s~~C~~~C~fC~~~~~~~~~~ 709 (965)
++++++++.+...+.+|++.|++.+ +.+|...|++++++++ |+.++++.+|++ |++|+++|.||.++.. ....
T Consensus 3 ~~~i~~k~~~~~l~~~e~~~ll~~~~~~~~~~l~~~A~~ir~~~~-g~~v~~~~~i~~-t~~C~~~C~fC~~~~~-~~~~ 79 (348)
T 3iix_A 3 GREILEKLERREFTREVLKEALSINDRGFNEALFKLADEIRRKYV-GDEVHIRAIIEF-SNVCRKNCLYCGLRRD-NKNL 79 (348)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH-CSEEEEEEEEEE-ECCCSCCCTTCTTCTT-CCSS
T ss_pred HHHHHHHHHhCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc-CCEEEEEEEeEe-cCCcCCcCccCCCCCC-CCCc
Confidence 4556666655667889999998553 4568889999988888 899999999999 9999999999998764 3333
Q ss_pred ccccCCCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHhcCcEeEEecCCCCHHHHHHHHHhCCCeE
Q psy8199 710 TATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYY 789 (965)
Q Consensus 710 ~~~~~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~e~l~~Lk~aG~~~i 789 (965)
.+++ +++++|+++++++.+.|++.|+|++|++| ....+++.++++.+++.++.++++.+.++++.++.|+++|++.+
T Consensus 80 ~~~~-ls~eei~~~i~~~~~~g~~~i~~~gGe~p--~~~~~~~~~li~~i~~~~~~i~~s~g~l~~e~l~~L~~ag~~~v 156 (348)
T 3iix_A 80 KRYR-MTPEEIVERARLAVQFGAKTIVLQSGEDP--YXMPDVISDIVKEIKKMGVAVTLSLGEWPREYYEKWKEAGADRY 156 (348)
T ss_dssp CCCB-CCHHHHHHHHHHHHHTTCSEEEEEESCCG--GGTTHHHHHHHHHHHTTSCEEEEECCCCCHHHHHHHHHHTCCEE
T ss_pred Ccee-CCHHHHHHHHHHHHHCCCCEEEEEeCCCC--CccHHHHHHHHHHHHhcCceEEEecCCCCHHHHHHHHHhCCCEE
Confidence 4555 89999999999999999999999988745 34468899999999988899999999999999999999999999
Q ss_pred eccCCC-CHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEec-CCCHHHHHHHHHHHHhcCCCCCceeeccccccC
Q psy8199 790 NHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIK 867 (965)
Q Consensus 790 ~i~~es-~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl-~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~ 867 (965)
.+++|| +++.++.+++.+++++++++++.++++|+.+++++|+|+ +||.+++.++++++++++ ++.+++++|+|.|
T Consensus 157 ~i~let~~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~G~p~et~e~~~~~~~~l~~l~--~~~i~i~~~~p~~ 234 (348)
T 3iix_A 157 LLRHETANPVLHRKLRPDTSFENRLNCLLTLKELGYETGAGSMVGLPGQTIDDLVDDLLFLKEHD--FDMVGIGPFIPHP 234 (348)
T ss_dssp ECCCBCSCHHHHHHHSTTSCHHHHHHHHHHHHHTTCEEEECBEESCTTCCHHHHHHHHHHHHHHT--CSEECCEECCCCT
T ss_pred eeeeeeCCHHHHHHhCCCcCHHHHHHHHHHHHHhCCeeccceEEeCCCCCHHHHHHHHHHHHhcC--CCEEeeeeeecCC
Confidence 999999 899999999999999999999999999999999999999 799999999999999999 8999999999999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeC--------------CccccCC
Q psy8199 868 GTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYG--------------DKLLTTD 933 (965)
Q Consensus 868 gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g--------------~~~~t~~ 933 (965)
|||+++.++.+.++++++++++|+++|+..|+++++|..++++.++.++.+|||+++.. ++..+..
T Consensus 235 gt~l~~~~~~~~~e~~~~~a~~R~~lp~~~i~~~~~~~~~~~~~~~~~l~~Gan~i~~~~~~~~~~~~~~~~~~~~~~~~ 314 (348)
T 3iix_A 235 DTPLANEKKGDFTLTLKMVALTRILLPDSNIPATTAMGTIVPGGREITLRCGANVIMPNWTPSPYRQLYQLYPGKICVFE 314 (348)
T ss_dssp TSTTTTSCCCCHHHHHHHHHHHHHHSTTSBCBCCHHHHHHSTTHHHHHHTTTCCEECCBCCCTTTGGGCCSSSCCTTTTS
T ss_pred CCCcccCCCCCHHHHHHHHHHHHHHCCCCCchhcchhhhcCHHHHHHHHhcCCcEEeCCCCchhcccccccCCCCcccCC
Confidence 99999999999999999999999999999899999998888899999999999999821 1111222
Q ss_pred C--CCChhhHHHHHHcCCCcchh
Q psy8199 934 N--TKTNDDSKLLKKLGINTRNI 954 (965)
Q Consensus 934 ~--~~~~~~~~~~~~~g~~~~~~ 954 (965)
+ .+.++...+++..|+.|...
T Consensus 315 ~~~~~~~~~~~~~~~~g~~~~~~ 337 (348)
T 3iix_A 315 KDTACIPCVMKMIELLGRKPGRD 337 (348)
T ss_dssp CTTCHHHHHHHHHHHTTCEECSS
T ss_pred CchhhHHHHHHHHHHcCCEeCCC
Confidence 1 23567788889999887654
|
| >2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-37 Score=344.82 Aligned_cols=354 Identities=30% Similarity=0.503 Sum_probs=285.7
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhH
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGAS 325 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGse 325 (965)
+|+||.+|+.|||+.++.+++++||.+|++.+++.++++...+.. ..++++...++++.++++++. .+++++++||++
T Consensus 20 ~~~~~~~g~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~~~~~-~~y~~~~~~~l~~~la~~~g~-~~~v~~~~g~t~ 97 (375)
T 2eh6_A 20 VYLYDEEGKEYLDFVSGIGVNSLGHAYPKLTEALKEQVEKLLHVS-NLYENPWQEELAHKLVKHFWT-EGKVFFANSGTE 97 (375)
T ss_dssp TEEEETTCCEEEESSHHHHTCTTCBSCHHHHHHHHHHHHHCSCCC-TTBCCHHHHHHHHHHHHTSSS-CEEEEEESSHHH
T ss_pred CEEEeCCCCEEEEcCCcccccccCCCCHHHHHHHHHHHHhccccC-cccCCHHHHHHHHHHHhhcCC-CCeEEEeCchHH
Confidence 899999999999999998888999999999999999987753322 245667788999999999864 389999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHH
Q psy8199 326 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIAR 405 (965)
Q Consensus 326 A~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (965)
|++.++++++.+.. ++.+++++|++.+++||++...+...++...+...+.+...++..+|.
T Consensus 98 a~~~~~~~~~~~~~-~~~~g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 159 (375)
T 2eh6_A 98 SVEAAIKLARKYWR-DKGKNKWKFISFENSFHGRTYGSLSATGQPKFHKGFEPLVPGFSYAKL----------------- 159 (375)
T ss_dssp HHHHHHHHHHHHHH-HTTCCCCEEEEEBTCCCCSSHHHHHHCBCGGGTTTTCSCCSSEEEECT-----------------
T ss_pred HHHHHHHHHHHHhc-cCCCCCCEEEEECCCcCCCchhhhhhcCCccccCCCCCCCCCceeCCC-----------------
Confidence 99999997654421 123456899999999999987776666543322223333344555443
Q ss_pred HHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcc
Q psy8199 406 CAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPD 485 (965)
Q Consensus 406 ~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pD 485 (965)
.|+++|+++++ +++++|+++| ++|++|.+.++++++++|.++|++||+++|+||+|++||+.+..+..+.++..+|
T Consensus 160 ~d~~~l~~~l~---~~~~~v~~~~-~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~d 235 (375)
T 2eh6_A 160 NDIDSVYKLLD---EETAGIIIEV-IQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGEFYAYQHFNLKPD 235 (375)
T ss_dssp TCHHHHHTTCC---TTEEEEEECS-EETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCS
T ss_pred chHHHHHHHhc---CCeEEEEEeC-ccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcchhhhhcCCCCC
Confidence 26788887774 4689999999 9999999989999999999999999999999999999998886666777788899
Q ss_pred eeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Q psy8199 486 FLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKAL 565 (965)
Q Consensus 486 ivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L 565 (965)
+++|||.+++| +++|++++++++++.+.. ..++.+++.++++++++.++|+.+. +..++++++++++.+.|
T Consensus 236 ~~s~SK~~~~g-~~~G~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~L 306 (375)
T 2eh6_A 236 VIALAKGLGGG-VPIGAILAREEVAQSFTP------GSHGSTFGGNPLACRAGTVVVDEVE--KLLPHVREVGNYFKEKL 306 (375)
T ss_dssp EEEECGGGGTT-SCCEEEEEEHHHHTTCCT------TSCCCSSTTCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
T ss_pred EEEEcccccCC-CCeEEEEEcHHHHhhhcC------CCCCCCCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 99999999987 799999999998877654 2356788899999999999998776 67888999999999999
Q ss_pred HcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec-CCEEEEeCCcccCHHHHHHHHHhhhcc
Q psy8199 566 TSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-GNTVYLMPPYILNKNEIQHMTSAIFQT 644 (965)
Q Consensus 566 ~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-~~~lR~~p~~~~t~~~i~~~~~~l~~~ 644 (965)
+++. . ..+++.|.++.+++. .+ ...+.+.|.++||.+.+. .+++|+++++..++++++++++++.+.
T Consensus 307 ~~~~---~-~~~~~~g~~~~~~~~-~~-------~~~~~~~l~~~gi~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~ 374 (375)
T 2eh6_A 307 KELG---K-GKVKGRGLMLGLELE-RE-------CKDYVLKALEKGLLINCTAGKVLRFLPPLIIQKEHIDRAISVLREI 374 (375)
T ss_dssp HHTT---S-SEEEEETTEEEEECS-SC-------CHHHHHHHHHTTEECEEETTTEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred HHHh---c-CCceEEEEEEEEEEc-Cc-------HHHHHHHHHHCCCEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 8752 1 355678888888774 11 235778888999999986 479999999999999999999988653
|
| >2oml_A Ribosomal large subunit pseudouridine synthase E; bifurcated beta sheet, thrombin-cleaved, isomerase; 1.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-35 Score=291.64 Aligned_cols=166 Identities=17% Similarity=0.124 Sum_probs=123.3
Q ss_pred CccEEEecCcEEEEECCCCCeeeeCCCCCcccHHHHHHHHCCcccCCCCccccccCCCCCceEEEeEeCHHHHHHHHHHH
Q psy8199 28 KLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQL 107 (965)
Q Consensus 28 ~~~i~~e~~~~lv~nKP~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~RLD~~tsGlll~a~~~~~~~~l~~~~ 107 (965)
+..|+|||++|+|+|||+|++||+.++....++.+.+. .+++++|||||++||||||||||+++++.|+++
T Consensus 3 ~~~ilyed~~~lvvnKP~G~~~~~~~~~~~~tl~~~l~--------~~~~~~vhRLD~~TSGlll~ak~~~~~~~l~~~- 73 (189)
T 2oml_A 3 RRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIP--------VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQP- 73 (189)
T ss_dssp -----CCCCCEEEEEECTTBCSCSSCCTTCBCGGGTCC--------CSSCEESSCCCTTCEEEEEEESCHHHHHHHHST-
T ss_pred ccccccCCCeEEEEECCCCCEecCCCCCCCCCHHHHcC--------CCCceECCCCCCCCeeEEEEEcCHHHHHHHhCc-
Confidence 45689999999999999999999988765667765543 137899999999999999999999999999995
Q ss_pred HcCCcCeEEEEEEcCccCCC--ceEeeccccCCCCC--eeEEEccCCCCcceEEEEEEeEEeeccCCcEEEEEEEeCCCc
Q psy8199 108 KMHIVQRKYLAMVWGIPKLN--GMINAAIMRNPHNR--IKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGR 183 (965)
Q Consensus 108 ~~~~~~K~Y~a~v~g~~~~~--~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~s~~~~~~~tGr 183 (965)
.++++|+|+|+|.|.++++ +.+..++..+.... ....... .....+.|.|+++... ..++|+++|+|.|||
T Consensus 74 -~~~v~K~Y~a~v~G~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~-~~~~~~~t~~~v~~~~---~~~~slv~~~l~TGR 148 (189)
T 2oml_A 74 -GKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVD-EPAWLWPRNPPIRERK---SIPTSWLKITLYEGR 148 (189)
T ss_dssp -TSCCCEEEEEEEESCCCHHHHHHHHHCCEETTEECCCCEEEEEC-CCTTCCCCSSCCC-CT---TSCEEEEEEEESCCC
T ss_pred -cCCCcEEEEEEEcCCCCHHHHHHHHcCceeCCceeeeeEEEEec-cccccccccccccccc---CCCcEEEEEEEeeCC
Confidence 7899999999999998754 24555554321111 1111111 1112335666666542 236899999999999
Q ss_pred ccHHHHHHHHhCCceecCCCCCcc
Q psy8199 184 THQIRVHMQWLGHGIVGDNLYGKK 207 (965)
Q Consensus 184 ~hQIR~~~~~~g~pi~gD~~~~~~ 207 (965)
+||||+||+++||||+||.+||..
T Consensus 149 ~HQIRvhla~lG~PI~gD~~Y~~g 172 (189)
T 2oml_A 149 NRQVRRMTAHVGFPTLRLIRYAMG 172 (189)
T ss_dssp TTHHHHHHHHTTCCEEEEEEEEET
T ss_pred CHHHHHHHHHcCCcCcceEEEEEC
Confidence 999999999999999999999843
|
| >2olw_A Ribosomal large subunit pseudouridine synthase E; bifurcated beta sheet, isomerase; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.2e-33 Score=287.38 Aligned_cols=168 Identities=17% Similarity=0.151 Sum_probs=116.6
Q ss_pred CCCccEEEecCcEEEEECCCCCeeeeCCCCCcccHHHHHHHHCCcccCCCCccccccCCCCCceEEEeEeCHHHHHHHHH
Q psy8199 26 VIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVN 105 (965)
Q Consensus 26 ~~~~~i~~e~~~~lv~nKP~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~RLD~~tsGlll~a~~~~~~~~l~~ 105 (965)
...+.|+|||++|+|+|||+|++||+.++....++.+.+. .+++.+|||||++||||||||||+++++.|++
T Consensus 29 ~~~~~Ilyed~~~lvvnKP~Gl~~~~~~~~~~~tl~~~l~--------~~~~~~VhRLDr~TSGllllAk~~~~~~~L~~ 100 (217)
T 2olw_A 29 STRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIP--------VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQ 100 (217)
T ss_dssp --------CCCCEEEEEECTTBCSCSSCCTTSBCGGGTCC--------CCSCEESSCCCTTCEEEEEEESCHHHHHHHHC
T ss_pred cccCceEeeCCcEEEEECCCCCEeccCCCCCCccHHHHhC--------cCCceECCCCCCCCeeEEEEEcCHHHHHHHHc
Confidence 3467899999999999999999999987765667766543 13688999999999999999999999999999
Q ss_pred HHHcCCcCeEEEEEEcCccCCC--ceEeeccccCCCC--CeeEEEccCCCCcceEEEEEEeEEeeccCCcEEEEEEEeCC
Q psy8199 106 QLKMHIVQRKYLAMVWGIPKLN--GMINAAIMRNPHN--RIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKT 181 (965)
Q Consensus 106 ~~~~~~~~K~Y~a~v~g~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~s~~~~~~~t 181 (965)
+ .++++|+|+|+|.|.++++ +.+..++..+... .....+.. ..+.+.+.+.++... ...++|+++|+|.|
T Consensus 101 ~--~~~v~K~Y~A~V~G~~~~~~~~~i~~~i~~~~g~~~~~~~~~~~--~~~~~~~~~~~v~~~--~~~~~slv~~~l~T 174 (217)
T 2olw_A 101 P--GKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVD--EPAWLWPRNPPIRER--KSIPTSWLKITLYE 174 (217)
T ss_dssp T--TCCCCEEEEEEEESCCCHHHHHHHHHCCEETTEECCCCEEEEEC--CCTTCCCCSSCCC-C--CSSCEEEEEEEESC
T ss_pred c--cccCCEEEEEEEccCCCHHHHHHHhCCEEeCCCcccceEEEEec--CCccccccccceecc--CCCCcEEEEEEECc
Confidence 4 7889999999999998754 2444444322110 01111110 000011111111111 12468999999999
Q ss_pred CcccHHHHHHHHhCCceecCCCCCcc
Q psy8199 182 GRTHQIRVHMQWLGHGIVGDNLYGKK 207 (965)
Q Consensus 182 Gr~hQIR~~~~~~g~pi~gD~~~~~~ 207 (965)
||+||||+||+++||||+||.+||..
T Consensus 175 GRtHQIRvhla~lG~PIvgD~rY~~g 200 (217)
T 2olw_A 175 GRNRQVRRMTAHVGFPTLRLIRYAMG 200 (217)
T ss_dssp CCTTHHHHHHHHTTCCEEEEEEEEET
T ss_pred CCCHHHHHHHHHCCCcEeCCEEEEEC
Confidence 99999999999999999999999843
|
| >3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.1e-31 Score=307.92 Aligned_cols=344 Identities=14% Similarity=0.091 Sum_probs=253.9
Q ss_pred eEEEecC--CcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcC--CCCCeEEEcC
Q psy8199 246 SKLITFS--GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQ--YKLGHCFYGS 321 (965)
Q Consensus 246 ~~~~d~d--G~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~~~ 321 (965)
+++||.+ |++|||+..+ .+..+.+|+|++|+.++++...+. ......+...++++.+.+.++ ...++|+|++
T Consensus 51 ~~~~d~~~~g~~~i~~~~~---~~~~~~~~~v~~a~~~~~~~~~~~-y~~~~~~l~~~l~~~l~~~~g~~~~~~~v~~~~ 126 (421)
T 3l8a_A 51 TYKWKTSENNPELLQMWVA---DMDFLPVPEIKEAIINYGREHIFG-YNYFNDDLYQAVIDWERKEHDYAVVKEDILFID 126 (421)
T ss_dssp BTTTGGGTTCTTCEECCSS---CCCSCCCHHHHHHHHHHHHHCCSS-CBCCCHHHHHHHHHHHHHHHCCCCCGGGEEEES
T ss_pred CccccccCCCCCeeecccC---CCCCCCCHHHHHHHHHHHhcCCcC-CCCCCHHHHHHHHHHHHHHhCCCCCHHHEEEcC
Confidence 8899999 8999999766 334458999999999999764221 122346778889999988876 4567899999
Q ss_pred ChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCC--CCCCCCCCCC
Q psy8199 322 DGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTP--DSRNINKGNS 399 (965)
Q Consensus 322 sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 399 (965)
||+||++.|++++.. ++++|++.+++||++...+...+. .+..+|.. +....
T Consensus 127 g~~ea~~~a~~~~~~--------~gd~Vi~~~~~y~~~~~~~~~~g~-------------~~~~~~~~~~~~~~~----- 180 (421)
T 3l8a_A 127 GVVPAISIALQAFSE--------KGDAVLINSPVYYPFARTIRLNDH-------------RLVENSLQIINGRFE----- 180 (421)
T ss_dssp CHHHHHHHHHHHHSC--------TEEEEEEEESCCHHHHHHHHHTTE-------------EEEEEECEEETTEEE-----
T ss_pred CHHHHHHHHHHHhcC--------CCCEEEECCCCcHHHHHHHHHCCC-------------EEEeccccccCCCee-----
Confidence 999999999998742 568899999999998654443322 12233321 10000
Q ss_pred hhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccccc-ccc-
Q psy8199 400 ANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKF-FAC- 477 (965)
Q Consensus 400 ~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~-~~~- 477 (965)
.|+++|++++.+ +++++|++++ ++|++|. .++++++++|+++|++||+++|+||+|++|+++|.. ..+
T Consensus 181 ------~d~~~le~~i~~--~~~~~vil~~-p~nptG~-~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~ 250 (421)
T 3l8a_A 181 ------IDFEQLEKDIID--NNVKIYLLCS-PHNPGGR-VWDNDDLIKIAELCKKHGVILVSDEIHQDLALFGNTHHSLN 250 (421)
T ss_dssp ------CCHHHHHHHHHH--TTEEEEEEES-SBTTTTB-CCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGG
T ss_pred ------eCHHHHHHHhhc--cCCeEEEECC-CCCCCCC-cCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCccHH
Confidence 268899999863 4678888888 8999994 557888999999999999999999999999988752 122
Q ss_pred ----cccCCCcceeeeccccC-CCcccceeeeec-HHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc--cc
Q psy8199 478 ----EHAEIWPDFLCLSKGIT-GGYLPLSLVMTT-DKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK--DN 549 (965)
Q Consensus 478 ----~~~~~~pDivt~sK~l~-gG~~pig~v~~~-~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~--~~ 549 (965)
+..+..+++.++||+++ +| +|+|+++++ +++++.+... ..+.+++++|+++++++.++|+..++ ++
T Consensus 251 ~~~~~~~~~~i~~~s~sK~~g~~G-~~~G~~~~~~~~l~~~~~~~-----~~~~~~~~~n~~~~~a~~aal~~~~~~~~~ 324 (421)
T 3l8a_A 251 TLDASYKDFTIILSSATKTFNIAG-TKNSFAIIQNESLRRKFQYR-----QLANNQHEVPTVGMIATQAAFQYGKPWLEE 324 (421)
T ss_dssp GSCTTGGGTEEEEECSHHHHTCGG-GCCEEEECCSHHHHHHHHHH-----HHHTTCSCCCHHHHHHHHHHHHHCHHHHHH
T ss_pred HcCchhcCcEEEEEeChhhccCch-hheEeEEcCCHHHHHHHHHH-----HHhcccCCCCHHHHHHHHHHHhccHHHHHH
Confidence 22344567788999997 56 899999998 8888887651 11345668999999999999985321 34
Q ss_pred HHHHHHHHHHHHHHHHHcccCCCceeeeeceeEEEE-EEEeecCccchhhHHHHHHHHHH-HcCcEEeec-------CCE
Q psy8199 550 ILQRISQDMKKITKALTSLITHPKIINFRQKGMIWA-FDVIIEDPEQIETFSKKFFVAAL-KNELLLRPI-------GNT 620 (965)
Q Consensus 550 ~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~G~~~~-i~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~-------~~~ 620 (965)
..++++++.+++.+.|+++ |++..+++.|.++. +++. ..+. ....+.+.|+ ++||++.++ .++
T Consensus 325 ~~~~~~~~~~~l~~~L~~~---~~i~~~~~~~~~~~~v~~~-~~~~----~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~ 396 (421)
T 3l8a_A 325 LKTVIEGNIKLVIKELEAK---TKIKVMEPEGTYLVWLDFS-AYAI----AQPQLSEKLQNEAKVVLNDGAHFGKEGKYF 396 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHH---CSCEEECCSBSSEEEEECG-GGTC----CTTHHHHHHHHTTCEECEEGGGGCGGGTTE
T ss_pred HHHHHHHHHHHHHHHHHhC---CCceEeCCCeeEEEEEecc-ccCC----CHHHHHHHHHHhCCEEEECchhhCCCCCCE
Confidence 5566667777777777654 67778888888776 6654 1111 1235667776 569999873 379
Q ss_pred EEEeCCcccCHHHHHHHHHhhhccc
Q psy8199 621 VYLMPPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 621 lR~~p~~~~t~~~i~~~~~~l~~~~ 645 (965)
+||+++ .++++++++++++.+++
T Consensus 397 iRi~~~--~~~~~i~~~l~~l~~~l 419 (421)
T 3l8a_A 397 ARLNVA--TPKNTVQEALSRIISVF 419 (421)
T ss_dssp EEEECC--SCHHHHHHHHHHHHHHC
T ss_pred EEEEec--CCHHHHHHHHHHHHHHH
Confidence 999977 68999999999987654
|
| >2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-29 Score=290.42 Aligned_cols=333 Identities=14% Similarity=0.076 Sum_probs=250.9
Q ss_pred eEEEecCCcccccccccchhccCC-CCCHHHHHHHHHHHhhccc-cc---cCCCCcHHHHHHHHHHHhhcCCCCCeEEEc
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFG-HSNSYINKALKNQLNKLEH-VM---LSNLTHKPVIKLSEKLSSLTQYKLGHCFYG 320 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lG-h~~p~v~~av~~~~~~~~~-~~---~~~~~~~~~~~la~~l~~~~~~~~~~v~~~ 320 (965)
+|++| ||++||||.++ .++| |.+|++.+|+.++++..+. +. ...+.++...++++.++++++ .++++++
T Consensus 57 ~~~~~-~g~~~id~~~~---~~lg~~~~~~v~~a~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~la~~~g--~~~~i~~ 130 (427)
T 2w8t_A 57 TEAVI-RGKDTILLGTY---NYMGMTFDPDVIAAGKEALEKFGSGTCGSRMLNGTFHDHMEVEQALRDFYG--TTGAIVF 130 (427)
T ss_dssp TEEEE-TTEEEEECSCC---CTTCGGGCHHHHHHHHHHHHHHCSCCCSCTTTTCCCHHHHHHHHHHHHHHT--CSEEEEE
T ss_pred ceEee-CCceEEEEECc---ccccCCCCHHHHHHHHHHHHHhCCCCcccccccCCcHHHHHHHHHHHHHhC--CCceEEe
Confidence 79999 99999999988 3689 6899999999999887321 11 122356888999999999995 5688999
Q ss_pred CChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCCh
Q psy8199 321 SDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSA 400 (965)
Q Consensus 321 ~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (965)
+||++|+..+++++. .+++.|++. ..+|++...++...+. .+..+|.
T Consensus 131 ~sGs~a~~~al~~l~--------~~gd~vl~~-~~~h~~~~~~~~~~g~------------~~~~~~~------------ 177 (427)
T 2w8t_A 131 STGYMANLGIISTLA--------GKGEYVILD-ADSHASIYDGCQQGNA------------EIVRFRH------------ 177 (427)
T ss_dssp SCHHHHHHHHHHHHS--------CTTCEEEEE-TTCCHHHHHHHHHSCS------------EEEEECT------------
T ss_pred cCcHHHHHHHHHHhc--------CCCCEEEEC-CcccHHHHHHHHHcCC------------eeEEeCC------------
Confidence 999999999988762 134555554 4566654444333321 2223332
Q ss_pred hHHHHHHHHHHHHHHHhCCC-cEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCC--Ccccccccc
Q psy8199 401 NEIARCAIFDLEILLKKNHN-KIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGC--GRTGKFFAC 477 (965)
Q Consensus 401 ~~~~~~d~~~le~~l~~~~~-~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~--gr~G~~~~~ 477 (965)
+|+++|++++++..+ ++++|+++| ++|++|.+.+ +++|+++|++||+++|+||+|+++ +++|.. ..
T Consensus 178 -----~d~~~le~~l~~~~~~~~~~v~~~~-~~n~tG~~~~----l~~l~~l~~~~g~~li~Dea~~~~~~~~~g~~-~~ 246 (427)
T 2w8t_A 178 -----NSVEDLDKRLGRLPKEPAKLVVLEG-VYSMLGDIAP----LKEMVAVAKKHGAMVLVDEAHSMGFFGPNGRG-VY 246 (427)
T ss_dssp -----TCHHHHHHHHHTSCSSSCEEEEEES-EETTTTEECC----HHHHHHHHHHTTCEEEEECTTTTTTSSTTSCC-HH
T ss_pred -----CCHHHHHHHHHhccCCCCeEEEEcC-CCCCCCCccC----HHHHHHHHHHcCCEEEEECCccccccCCCCCc-hH
Confidence 478899999976433 689999999 8999999887 999999999999999999999964 333333 44
Q ss_pred cccCCCcc----eeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc-ccHHH
Q psy8199 478 EHAEIWPD----FLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK-DNILQ 552 (965)
Q Consensus 478 ~~~~~~pD----ivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~-~~~~~ 552 (965)
+++++.|| +.+|||+++ .+.|++++++++++.+... ..++ ..|++.|+++++++.++|+.++. ++..+
T Consensus 247 ~~~~~~~~~di~~~s~sK~~g---~~gG~v~~~~~l~~~l~~~--~~~~--~~~~~~~~~~~aa~~~al~~~~~~~~~~~ 319 (427)
T 2w8t_A 247 EAQGLEGQIDFVVGTFSKSVG---TVGGFVVSNHPKFEAVRLA--CRPY--IFTASLPPSVVATATTSIRKLMTAHEKRE 319 (427)
T ss_dssp HHTTCTTCCSEEEEESSSTTC---SCCEEEEECCTTGGGGGGT--CHHH--HSSCCCCHHHHHHHHHHHHHHTSCHHHHH
T ss_pred hhcCCCcCCcEEEecchhhhc---cCCCEEEeCHHHHHHHHHh--cccc--cccCCCCHHHHHHHHHHHHHHhcCHHHHH
Confidence 55777666 568999985 3669999999998887651 1122 24667899999999999998865 56889
Q ss_pred HHHHHHHHHHHHHHcccCCCceeee-ec-eeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecC--------CEEE
Q psy8199 553 RISQDMKKITKALTSLITHPKIINF-RQ-KGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG--------NTVY 622 (965)
Q Consensus 553 ~~~~~~~~l~~~L~~l~~~~~i~~v-~g-~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~--------~~lR 622 (965)
+++++++++.+.|+++ ++... .+ .|.++.+.+. + ......+.+.|.++||++.+.. +++|
T Consensus 320 ~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~--~----~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lR 389 (427)
T 2w8t_A 320 RLWSNARALHGGLKAM----GFRLGTETCDSAIVAVMLE--D----QEQAAMMWQALLDGGLYVNMARPPATPAGTFLLR 389 (427)
T ss_dssp HHHHHHHHHHHHHHHH----TCEESCSSCCSSEEEEEES--S----HHHHHHHHHHHHHTTEECEEECTTTSCTTCEEEE
T ss_pred HHHHHHHHHHHHHHHc----CCcccCCCCCCCEEEEEEC--C----HHHHHHHHHHHHHCCeEEeeeCCCCCCCCCeEEE
Confidence 9999999999999876 23322 34 6788888774 2 1224568889999999998742 4899
Q ss_pred EeCCcccCHHHHHHHHHhhhccc
Q psy8199 623 LMPPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 623 ~~p~~~~t~~~i~~~~~~l~~~~ 645 (965)
|+++..+++++++++++++.+.+
T Consensus 390 i~~~~~~t~e~i~~~~~~l~~~l 412 (427)
T 2w8t_A 390 CSICAEHTPAQIQTVLGMFQAAG 412 (427)
T ss_dssp EECCTTCCHHHHHHHHHHHHHHH
T ss_pred EEeCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999887654
|
| >1ksk_A Ribosomal small subunit pseudouridine synthase A; RSUA, lyase; 2.00A {Escherichia coli} SCOP: d.265.1.3 d.66.1.5 PDB: 1ksl_A 1ksv_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.9e-32 Score=281.09 Aligned_cols=176 Identities=16% Similarity=0.173 Sum_probs=130.7
Q ss_pred cccCCEEEEEcCCCCCCCCcccccCCCccEEEe-cCcEEEEECCCCCeeeeCCCCCcccHHHHHHHHCCcccCCCCcccc
Q psy8199 2 IISGYELIIIKPKKNFFLNKTEKKVIKLDIIYE-DNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIV 80 (965)
Q Consensus 2 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~e-~~~~lv~nKP~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v 80 (965)
|++|++. ++.+...+...+ ........|+|| |++|+|+|||+|++||+.++. ..++.+.+...++ .++++|
T Consensus 30 V~VNG~~-v~~~~~~v~~gD-~I~v~~~~i~~e~d~~~lvvnKP~G~~~~~~~~~-~~tl~~~l~~~~~-----~~~~~v 101 (234)
T 1ksk_A 30 VTVDGEI-VRNAAFKLLPEH-DVAYDGNPLAQQHGPRYFMLNKPQGYVCSTDDPD-HPTVLYFLDEPVA-----WKLHAA 101 (234)
T ss_dssp EEETTEE-CCCTTCEECTTC-CEEETTEEECCCCCCCEEEEEECTTCBSSSSCSS-SCBGGGGCCCTTG-----GGCEES
T ss_pred EEECCEE-eCCCCCCCCCCC-EEEEeCeEeecCCCCEEEEEECCCCCEeCCCCCC-CCcHHHHhhhhhc-----CCeeEc
Confidence 4455655 433455554432 333334579999 999999999999999998764 6677776644332 368899
Q ss_pred ccCCCCCceEEEeEeCHHHHHHHHHHHHcCCcCeEEEEEEcCccCCCceEeeccccCCCCCeeEEEcc-CCCCcceEEEE
Q psy8199 81 HRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTVSK-NFNAKPALTYY 159 (965)
Q Consensus 81 ~RLD~~tsGlll~a~~~~~~~~l~~~~~~~~~~K~Y~a~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~t~~ 159 (965)
||||++||||||||||++++++|.+ ++++++|+|+|+|.|.++++. ++.+.. . +.+.. ...++++. |
T Consensus 102 hRLD~~TsGlll~ak~~~~~~~l~~--~~~~v~K~Y~a~v~g~~~~~~-i~~~~~-g------~~~~~~~~~~~~a~--~ 169 (234)
T 1ksk_A 102 GRLDIDTTGLVLMTDDGQWSHRITS--PRHHCEKTYLVTLESPVADDT-AEQFAK-G------VQLHNEKDLTKPAV--L 169 (234)
T ss_dssp SCCCTTCEEEEEEESCHHHHHHHHC--TTSCCCEEEEEEESSCCCTTH-HHHHHH-C------CCCTTCSSCCCCCE--E
T ss_pred CCCCCCCeeEEEEEcCHHHHHHHhC--CCCCCCeEEEEEEccCCCHHH-HHHHHC-C------eEECCCCcccceEE--E
Confidence 9999999999999999999999987 789999999999999987652 221110 0 00110 01345554 5
Q ss_pred EEeEEeeccCCcEEEEEEEeCCCcccHHHHHHHHhCCceecCCCCC
Q psy8199 160 ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYG 205 (965)
Q Consensus 160 ~~~~~~~~~~~~~s~~~~~~~tGr~hQIR~~~~~~g~pi~gD~~~~ 205 (965)
+++. .|+++|+|.|||+||||+||+++||||+||..|+
T Consensus 170 ~~~~--------~s~~~~~l~tGR~HQIR~h~~~lG~pi~gd~ry~ 207 (234)
T 1ksk_A 170 EVIT--------PTQVRLTISEGRYHQVKRMFAAVGNHVVELHRER 207 (234)
T ss_dssp EEEE--------TTEEEEEESCCCTTHHHHHHHHTTCCEEEEEEEE
T ss_pred EEeC--------CeEEEEEEccCCCHHHHHHHHHcCCeEeeeEEEE
Confidence 6654 3899999999999999999999999999999996
|
| >1vio_A Ribosomal small subunit pseudouridine synthase A; structural genomics, lyase; 1.59A {Haemophilus influenzae} SCOP: d.265.1.3 d.66.1.5 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-31 Score=277.83 Aligned_cols=177 Identities=19% Similarity=0.201 Sum_probs=129.8
Q ss_pred cccCCEEEEEcCCCCCCCCcccccCCCccEEEecCc-EEEEECCCCCeeeeCCCCCcccHHHHHHHHCCcccCCCCcccc
Q psy8199 2 IISGYELIIIKPKKNFFLNKTEKKVIKLDIIYEDNE-IIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIV 80 (965)
Q Consensus 2 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~e~~~-~lv~nKP~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v 80 (965)
|++|+++ ++.+...+...+ .+...+..|+|||++ |+|+|||+|++|++.++. ..++.+.+...++ .++++|
T Consensus 29 V~VNG~~-v~~~~~~v~~gD-~I~v~~~~i~~ed~~~~lvvnKP~G~~~~~~~~~-~~tl~~~l~~~~~-----~~~~~v 100 (243)
T 1vio_A 29 VKINGEI-VKSGSVQISQED-EIYFEDELLTWIEEGQYFMLNKPQGCVCSNDDGD-YPTIYQFFDYPLA-----GKLHSA 100 (243)
T ss_dssp EEETTEE-CCCTTCEECTTS-CEEETTEECCSSCCCCEEEEEECTTCBSSCCC---CCBGGGGSCTTGG-----GGCEES
T ss_pred EEECCEE-eCCCCCCcCCCC-EEEEeccccccCCCCEEEEEECCCCCEeCCCCCC-CCcHHHHHhHHhc-----CCEeEc
Confidence 4556665 434555555433 344445679999999 999999999999988764 5677776644321 368899
Q ss_pred ccCCCCCceEEEeEeCHHHHHHHHHHHHcCCcCeEEEEEEcCccCCCceEeeccccCCCCCeeEEEcc-CCCCcceEEEE
Q psy8199 81 HRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTVSK-NFNAKPALTYY 159 (965)
Q Consensus 81 ~RLD~~tsGlll~a~~~~~~~~l~~~~~~~~~~K~Y~a~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~t~~ 159 (965)
||||++||||||||||+++++++.. +++.++|+|+|+|.|.++++. ++.+.. . ..+.. ...++++. |
T Consensus 101 hRLD~~TsGlll~ak~~~~a~~l~~--~~~~v~K~Y~a~v~g~~~~~~-i~~~~~-g------~~~~~~~~~~~~a~--~ 168 (243)
T 1vio_A 101 GRLDVDTTGLVLLTDDGQWSHRITS--PKHHCEKTYLVTLADPVEENY-SAACAE-G------ILLRGEKEPTKPAK--L 168 (243)
T ss_dssp SCCCTTCEEEEEEESCHHHHHHHHC--TTSCCCEEEEEEESSCCCTTH-HHHHHH-C------CCCTTCSSCCCCCE--E
T ss_pred cCCCCCCeEEEEEEECHHHHHHHhC--CCCCCCEEEEEEEeCCCCHHH-HHHHhC-C------eEECCCCccceeEE--E
Confidence 9999999999999999999888887 789999999999999987652 222110 0 00111 11356665 4
Q ss_pred EEeEEeeccCCcEEEEEEEeCCCcccHHHHHHHHhCCceecCC--CCCc
Q psy8199 160 ERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDN--LYGK 206 (965)
Q Consensus 160 ~~~~~~~~~~~~~s~~~~~~~tGr~hQIR~~~~~~g~pi~gD~--~~~~ 206 (965)
+++. .|+++|+|.|||+||||+||+++||||+||. .||.
T Consensus 169 ~~l~--------~sl~~~~l~tGR~HQIR~hl~~lG~pI~gd~r~~~G~ 209 (243)
T 1vio_A 169 EILD--------DYNVNLTISEGRYHQVKRMFAALGNKVVGLHRWKIGD 209 (243)
T ss_dssp EECS--------SSEEEEEESCCCTTHHHHHHHHTTCCEEEEEEEEETT
T ss_pred EEeC--------CEEEEEEEccCCcHHHHHHHHHCCCeEcccEEEEECC
Confidence 5543 4899999999999999999999999999999 5564
|
| >3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.9e-28 Score=275.76 Aligned_cols=334 Identities=15% Similarity=0.185 Sum_probs=250.0
Q ss_pred eEEEecCCcccccccccchhccCC-CCCHHHHHHHHHHHhhccccc----cCCCCcHHHHHHHHHHHhhcCCCCCeEEEc
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFG-HSNSYINKALKNQLNKLEHVM----LSNLTHKPVIKLSEKLSSLTQYKLGHCFYG 320 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lG-h~~p~v~~av~~~~~~~~~~~----~~~~~~~~~~~la~~l~~~~~~~~~~v~~~ 320 (965)
+|++| +|++|||+.++ +++| |.+|++.+++.+++++..+.. ...+..+...++++.++++++ .++.+++
T Consensus 36 ~~v~~-~g~~~id~~~~---~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~--~~~~i~~ 109 (399)
T 3tqx_A 36 AEIKV-GEKEVLNFCAN---NYLGLADHPALIKTAQTVVEQYGFGMASVRFICGTQTIHKELEKDISEFLG--TDDTILY 109 (399)
T ss_dssp SEEEE-TTEEEEECSSC---CTTSCTTCHHHHHHHHHHHHHHCSCCCSCCCCCCCBHHHHHHHHHHHHHHT--CSEEEEE
T ss_pred ceEee-CCeeEEEeecc---CcccccCCHHHHHHHHHHHHHhCCCCCCcCccccCchHHHHHHHHHHHHHC--CCcEEEE
Confidence 79999 99999999987 6789 789999999999988743211 112356778999999999985 4567777
Q ss_pred CChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCCh
Q psy8199 321 SDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSA 400 (965)
Q Consensus 321 ~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (965)
+||++|+..+++.+. .+++.|++.+++|.++ ..+....+. .+..+|.
T Consensus 110 ~sGt~a~~~~l~~~~--------~~gd~v~~~~~~~~~~-~~~~~~~g~------------~~~~~~~------------ 156 (399)
T 3tqx_A 110 SSCFDANGGLFETLL--------GPEDAIISDELNHASI-IDGIRLCKA------------QRYRYKN------------ 156 (399)
T ss_dssp SCHHHHHHTTHHHHC--------CTTCEEEEETTCCHHH-HHHHHSCCS------------EEEEECT------------
T ss_pred CchHHHHHHHHHHhc--------CCCCEEEECCcccHHH-HHHHHHcCC------------ceeEeCC------------
Confidence 889999999988663 2456677766655443 333333321 2233332
Q ss_pred hHHHHHHHHHHHHHHHhCCC---cEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccc-cCC-Ccccccc
Q psy8199 401 NEIARCAIFDLEILLKKNHN---KIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIA-VGC-GRTGKFF 475 (965)
Q Consensus 401 ~~~~~~d~~~le~~l~~~~~---~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~-tg~-gr~G~~~ 475 (965)
.|+++|++++++... ++++|++++ ++|++|.+.+ +++|.++|++||+++|+||+| .|+ ++.+. +
T Consensus 157 -----~d~~~l~~~l~~~~~~~~~~~~v~~~~-~~nptG~~~~----l~~i~~l~~~~~~~li~De~~~~~~~~~~~~-~ 225 (399)
T 3tqx_A 157 -----NAMGDLEAKLKEADEKGARFKLIATDG-VFSMDGIIAD----LKSICDLADKYNALVMVDDSHAVGFIGENGR-G 225 (399)
T ss_dssp -----TCTTHHHHHHHHHHTTTCSSEEEEEES-EETTTTEECC----HHHHHHHHHHTTCEEEEECTTTTTTSSTTSC-C
T ss_pred -----CCHHHHHHHHHhhhccCCCceEEEEeC-CCCCCCCcCC----HHHHHHHHHHcCCEEEEECCccccccCCCCC-c
Confidence 245677777765422 688999999 8999999887 999999999999999999999 454 44433 2
Q ss_pred cccccCC--Cccee--eeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHH-h-ccc
Q psy8199 476 ACEHAEI--WPDFL--CLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIF-N-KDN 549 (965)
Q Consensus 476 ~~~~~~~--~pDiv--t~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~-~-~~~ 549 (965)
..+.+++ .+|++ ++||+++ | .+.|++++++++++.+... ...+ ..+.+.++++++++.++|+.+ + .++
T Consensus 226 ~~~~~~~~~~~di~~~s~sK~~~-g-~~gG~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~ 299 (399)
T 3tqx_A 226 TPEYCGVADRVDILTGTLGKALG-G-ASGGYTSGHKEIIEWLRNR--SRPY--LFSNTVAPVIVATSLKVLELLKTEGPQ 299 (399)
T ss_dssp HHHHHTCTTCCSEEEEESSSSSC-S-SCCEEEEECHHHHHHHHHH--CHHH--HSSCCCCHHHHHHHHHHHHHHHHTHHH
T ss_pred hHHhhCCCCCCcEEEecchHhcc-c-CceEEEEcCHHHHHHHHHh--Ccce--eccCCCcHHHHHHHHHHHHHHhhccHH
Confidence 4556666 78988 7999998 4 5789999999999888651 1112 234467899999999999977 3 356
Q ss_pred HHHHHHHHHHHHHHHHHcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec-------C-CEE
Q psy8199 550 ILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-------G-NTV 621 (965)
Q Consensus 550 ~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-------~-~~l 621 (965)
..++++++.+++.+.|+++ ++..+++.|.++.+.+. + ......+.+.|.++||++.+. + +++
T Consensus 300 ~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~--~----~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~i 369 (399)
T 3tqx_A 300 LRKQLQENSRYFRAGMEKL----GFQLVPGNHPIIPVMLG--D----AQLATNMADHLLQEGIYVVGFSYPVVPMGKARI 369 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHH----TCCBCCCSSSEEEEEEE--C----HHHHHHHHHHHHHTTEECCEECTTTSCTTCEEE
T ss_pred HHHHHHHHHHHHHHHHHHc----CCCcCCCCCCEEEEEeC--C----HHHHHHHHHHHHHCCCEEeeeCCCCCCCCCceE
Confidence 7888999999999999876 34445778888888875 2 122457888999999999853 1 589
Q ss_pred EEeCCcccCHHHHHHHHHhhhccc
Q psy8199 622 YLMPPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 622 R~~p~~~~t~~~i~~~~~~l~~~~ 645 (965)
|++++..+++++++++++++.+.+
T Consensus 370 Ri~~~~~~~~~~i~~~~~~l~~~~ 393 (399)
T 3tqx_A 370 RVQMSAVHTQQQLDRAIEAFGQVG 393 (399)
T ss_dssp EEECCTTCCHHHHHHHHHHHHHHH
T ss_pred EEEeecCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999987654
|
| >1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4 | Back alignment and structure |
|---|
Probab=99.96 E-value=7.5e-28 Score=274.44 Aligned_cols=335 Identities=15% Similarity=0.179 Sum_probs=245.8
Q ss_pred eEEEecCCcccccccccchhccCCC-CCHHHHHHHHHHHhhccccc-cCC---CCcHHHHHHHHHHHhhcCCCCCeEEEc
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGH-SNSYINKALKNQLNKLEHVM-LSN---LTHKPVIKLSEKLSSLTQYKLGHCFYG 320 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh-~~p~v~~av~~~~~~~~~~~-~~~---~~~~~~~~la~~l~~~~~~~~~~v~~~ 320 (965)
+|++|.+|++|||+.++ +++|| .+|++.+|+.++++...... ... +..+...++.+.++++++. ++.+++
T Consensus 37 ~~~~~~~g~~~id~~~~---~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~--~~~i~~ 111 (401)
T 1fc4_A 37 ADITVADGSHVINFCAN---NYLGLANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFLGM--EDAILY 111 (401)
T ss_dssp SEEEBTTSCEEEECCCS---CTTSCTTCHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHHHHHTC--SEEEEE
T ss_pred ceEEeeCCccEEEeecc---CcccccCCHHHHHHHHHHHHHhCCCCCCCCcccCCcHHHHHHHHHHHHHhCC--CcEEEe
Confidence 79999999999999988 46997 89999999999987643211 011 1267788999999999964 367778
Q ss_pred CChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCCh
Q psy8199 321 SDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSA 400 (965)
Q Consensus 321 ~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (965)
+||++|+..+++.+.. +++.|++..+ +|+....+....+ ..+..++.
T Consensus 112 ~sGs~a~~~~~~~~~~--------~gd~v~~~~~-~~~~~~~~~~~~g------------~~~~~~~~------------ 158 (401)
T 1fc4_A 112 SSCFDANGGLFETLLG--------AEDAIISDAL-NHASIIDGVRLCK------------AKRYRYAN------------ 158 (401)
T ss_dssp SCHHHHHHTTHHHHCC--------TTCEEEEETT-CCHHHHHHHHTSC------------SEEEEECT------------
T ss_pred CChHHHHHHHHHHHcC--------CCCEEEEcch-hHHHHHHHHHHcC------------CceEEECC------------
Confidence 8899999999887632 3455665554 5554443333222 11223332
Q ss_pred hHHHHHHHHHHHHHHHhCCC---cEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEecccc-CC-Ccccccc
Q psy8199 401 NEIARCAIFDLEILLKKNHN---KIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAV-GC-GRTGKFF 475 (965)
Q Consensus 401 ~~~~~~d~~~le~~l~~~~~---~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-g~-gr~G~~~ 475 (965)
.|+++|++++++..+ ++++|++++ ++|++|.+.+ +++|.++|++||+++|+||+|. |+ +++|..+
T Consensus 159 -----~d~~~l~~~l~~~~~~~~~~~~v~~~~-~~nptG~~~~----~~~i~~l~~~~~~~li~De~~~~g~~~~~g~~~ 228 (401)
T 1fc4_A 159 -----NDMQELEARLKEAREAGARHVLIATDG-VFSMDGVIAN----LKGVCDLADKYDALVMVDDSHAVGFVGENGRGS 228 (401)
T ss_dssp -----TCHHHHHHHHHHHHHTTCSSEEEEEES-EETTTTEECC----HHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCH
T ss_pred -----CCHHHHHHHHHHhhccCCCceEEEEeC-CcCCCCCCCC----HHHHHHHHHHcCCEEEEECcccccccCCCCCcc
Confidence 256788888864321 578888888 8999998887 9999999999999999999994 87 3456543
Q ss_pred cccccCCC--ccee--eeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc-ccH
Q psy8199 476 ACEHAEIW--PDFL--CLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK-DNI 550 (965)
Q Consensus 476 ~~~~~~~~--pDiv--t~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~-~~~ 550 (965)
.+.+++. .|++ ++||.++|+ +.|++++++++++.+.... . .+..+++.++++++++.++|+.+.. ++.
T Consensus 229 -~~~~~~~~~~di~~~s~sK~~~~~--~gG~~~~~~~~~~~l~~~~--~--~~~~~~~~~~~~~~a~~~~l~~~~~~~~~ 301 (401)
T 1fc4_A 229 -HEYCDVMGRVDIITGTLGKALGGA--SGGYTAARKEVVEWLRQRS--R--PYLFSNSLAPAIVAASIKVLEMVEAGSEL 301 (401)
T ss_dssp -HHHTTCTTCCSEEEEESSSTTCSS--SCEEEEECHHHHHHHHHHC--H--HHHHSCCCCHHHHHHHHHHHHHHHTCHHH
T ss_pred -HHHcCCCcCCcEEEecchhhccCC--CCEEEEcCHHHHHHHHHhC--c--CceeCCCCCHHHHHHHHHHHHHHhcCHHH
Confidence 3334554 4777 789999775 3588999999988876511 1 1223668899999999999998753 567
Q ss_pred HHHHHHHHHHHHHHHHcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecC--------CEEE
Q psy8199 551 LQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG--------NTVY 622 (965)
Q Consensus 551 ~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~--------~~lR 622 (965)
.++++++.+++.+.|+++ ++..+.+.|.++.+.+. + ......+.+.|.++||++.++. +++|
T Consensus 302 ~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~--~----~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~iR 371 (401)
T 1fc4_A 302 RDRLWANARQFREQMSAA----GFTLAGADHAIIPVMLG--D----AVVAQKFARELQKEGIYVTGFFYPVVPKGQARIR 371 (401)
T ss_dssp HHHHHHHHHHHHHHHHHT----TCCBCCSSSSEEEEEEE--C----HHHHHHHHHHHHHTTEECCEECTTSSCTTCEEEE
T ss_pred HHHHHHHHHHHHHHHHHc----CCcccCCCCCEEEEEcC--C----hHHHHHHHHHHHHCCcEEeeecCCCCCCCCceEE
Confidence 888999999999999876 23333567888888875 2 1224468888999999998742 4799
Q ss_pred EeCCcccCHHHHHHHHHhhhccc
Q psy8199 623 LMPPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 623 ~~p~~~~t~~~i~~~~~~l~~~~ 645 (965)
++++..+++++++++++++.+.+
T Consensus 372 i~~~~~~~~~~i~~~~~~l~~~~ 394 (401)
T 1fc4_A 372 TQMSAAHTPEQITRAVEAFTRIG 394 (401)
T ss_dssp EECCTTCCHHHHHHHHHHHHHHH
T ss_pred EEeCCCCCHHHHHHHHHHHHHHH
Confidence 99998899999999999887653
|
| >3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A | Back alignment and structure |
|---|
Probab=99.96 E-value=8.2e-28 Score=274.82 Aligned_cols=331 Identities=15% Similarity=0.131 Sum_probs=244.1
Q ss_pred eEEEecCCcccccccccchhccCCC-CCHHHHHHHHHHHhhccc----cccCCCCcHHHHHHHHHHHhhcCCCCCeEEEc
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGH-SNSYINKALKNQLNKLEH----VMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYG 320 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh-~~p~v~~av~~~~~~~~~----~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~ 320 (965)
.+++|.+|++||||.++ .++|+ .||+|++|+.+++++... +....+..+...+++++++++++ .+.++++
T Consensus 51 ~~~~~~~g~~~ld~~s~---~~l~~~~~p~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g--~~~~i~~ 125 (409)
T 3kki_A 51 LVLGKQASPDDIILQSN---DYLALANHPLIKARLAKSLLEEQQSLFMSASFLQNDYDKPMIEKRLAKFTG--FDECLLS 125 (409)
T ss_dssp TTCCCCCCTTSEECCCS---CTTCCTTCHHHHHHHHHHHHSCCCCCCSBGGGGCSTTTSCHHHHHHHHHHT--CSEEEEE
T ss_pred eeeCCCCCCceEEeecc---CccCCcCCHHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHHhC--CCeEEEe
Confidence 56889999999999876 45676 589999999999987421 11122345667789999999984 5677888
Q ss_pred CChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCCh
Q psy8199 321 SDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSA 400 (965)
Q Consensus 321 ~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (965)
+||++|+..+++.+.. +++.|++.++ +|+....+....+. ....++.
T Consensus 126 ~sGt~a~~~~l~~~~~--------~gd~Vl~~~~-~~~~~~~~~~~~g~------------~~~~~~~------------ 172 (409)
T 3kki_A 126 QSGWNANVGLLQTICQ--------PNTNVYIDFF-AHMSLWEGARYANA------------QAHPFMH------------ 172 (409)
T ss_dssp SCHHHHHHHHHHHHCC--------TTCEEEEETT-SCHHHHHHHHHTTC------------EEEEECT------------
T ss_pred cchHHHHHHHHHHhcC--------CCCEEEECCC-cCHHHHHHHHHcCC------------eEEEecC------------
Confidence 9999999999987632 4566666555 45544443333321 1122222
Q ss_pred hHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccC--CCccccccccc
Q psy8199 401 NEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVG--CGRTGKFFACE 478 (965)
Q Consensus 401 ~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg--~gr~G~~~~~~ 478 (965)
+|+++|++++.+. +.++|++++ ++|++|.+.+ +++|+++|++||++||+||+|++ +|++|..+. .
T Consensus 173 -----~d~~~le~~l~~~--~~~~vi~~~-~~nptG~~~~----l~~l~~la~~~~~~li~De~~~~g~~g~~g~~~~-~ 239 (409)
T 3kki_A 173 -----NNCDHLRMLIQRH--GPGIIVVDS-IYSTLGTIAP----LAELVNISKEFGCALLVDESHSLGTHGPNGAGLL-A 239 (409)
T ss_dssp -----TCHHHHHHHHHHH--CSCEEEEES-BCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHH-H
T ss_pred -----CCHHHHHHHHHhc--CCeEEEECC-CCCCCCCcCC----HHHHHHHHHHcCCEEEEECCccccccCCCCCcch-h
Confidence 3688999999753 248899999 9999998887 99999999999999999999998 887776544 4
Q ss_pred ccCC--Ccce--eeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc-ccHHHH
Q psy8199 479 HAEI--WPDF--LCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK-DNILQR 553 (965)
Q Consensus 479 ~~~~--~pDi--vt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~-~~~~~~ 553 (965)
.+++ .+|+ .++||++++| .|++++++++++.+... ...+. .+.+.++++++++.++|+.+++ +.+.++
T Consensus 240 ~~~~~~~~di~~~s~sK~~~~~---gg~v~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~aa~~aal~~~~~~~~~~~~ 312 (409)
T 3kki_A 240 ELGLTREVHFMTASLAKTFAYR---AGAIWCNNEVNRCVPFI--SYPAI--FSSTLLPYEAAGLETTLEIIESADNRRQH 312 (409)
T ss_dssp HHTCGGGCSEEEEESSSTTCSS---CEEEEESSSGGGTHHHH--CHHHH--HSBCCCHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred hcCCCCCCCEEEeecchhhCCC---ceEEEECHHHHHHHHHh--CcCcc--ccCCCcHHHHHHHHHHHHHHhcCHHHHHH
Confidence 4555 4677 5789999875 48899999888877641 11122 2234689999999999998765 467788
Q ss_pred HHHHHHHHHHHHHcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec--------CCEEEEeC
Q psy8199 554 ISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI--------GNTVYLMP 625 (965)
Q Consensus 554 ~~~~~~~l~~~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~--------~~~lR~~p 625 (965)
++++.+++.+.|+++ ++ .+.+.|.++.+.+. + ......+.+.|.++||++.+. .+++||++
T Consensus 313 ~~~~~~~l~~~L~~~----g~-~~~~~~~~~~~~~~--~----~~~~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~iRi~~ 381 (409)
T 3kki_A 313 LDRMARKLRIGLSQL----GL-TIRSESQIIGLETG--D----ERNTEKVRDYLESNGVFGSVFCRPATSKNKNIIRLSL 381 (409)
T ss_dssp HHHHHHHHHHHHHTT----TC-CCCCSSSEEEEEEE--S----HHHHHHHHHHHHHTTEECEEECTTSSCTTCEEEEEEC
T ss_pred HHHHHHHHHHHHHHc----CC-ccCCCCCEEEEEeC--C----HHHHHHHHHHHHHCCceEeeeCCCCcCCCCcEEEEEc
Confidence 899999999999876 22 23367888888875 2 122446888899999998642 26899999
Q ss_pred CcccCHHHHHHHHHhhhccc
Q psy8199 626 PYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 626 ~~~~t~~~i~~~~~~l~~~~ 645 (965)
+..+++++++++++++.+++
T Consensus 382 ~~~~t~e~i~~~~~~l~~~l 401 (409)
T 3kki_A 382 NSDVNDEQIAKIIEVCSDAV 401 (409)
T ss_dssp CTTCCHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999887543
|
| >3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.8e-28 Score=275.54 Aligned_cols=339 Identities=11% Similarity=0.024 Sum_probs=239.8
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhc-cccccCCCCcHHHHHHHHHHHhhcC--CCCCeEEEcCC
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKL-EHVMLSNLTHKPVIKLSEKLSSLTQ--YKLGHCFYGSD 322 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~-~~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~~~s 322 (965)
+|+||.+|++||||.+|. .+++ .+|+|.+|+.+++... ..+.. .+ .+....+++.+.+..+ .+.+++++++|
T Consensus 15 ~~~~d~~g~~~idl~~~~--~~~~-~~~~v~~a~~~~~~~~~~~y~~-~~-~~lr~~la~~~~~~~~~~~~~~~i~~t~g 89 (377)
T 3fdb_A 15 TMKWTRYGQGVLPLWVAE--SDFS-TCPAVLQAITDAVQREAFGYQP-DG-SLLSQATAEFYADRYGYQARPEWIFPIPD 89 (377)
T ss_dssp CHHHHSSCTTSEECCSSC--CCSC-CCHHHHHHHHHHHHTTCCSSCC-SS-CCHHHHHHHHHHHHHCCCCCGGGEEEESC
T ss_pred CceeeccCCCeeeecccC--CCCC-CCHHHHHHHHHHHHcCCCCCCC-CC-HHHHHHHHHHHHHHhCCCCCHHHEEEeCC
Confidence 789999999999998873 4454 7999999999998763 33332 23 6677777777776554 35679999999
Q ss_pred hhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhH
Q psy8199 323 GASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANE 402 (965)
Q Consensus 323 GseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (965)
|++|++.+++.+.. ++++|++..++||++.......+. .+..+|....
T Consensus 90 ~~~a~~~~~~~~~~--------~gd~vl~~~~~~~~~~~~~~~~g~-------------~~~~~~~~~~----------- 137 (377)
T 3fdb_A 90 VVRGLYIAIDHFTP--------AQSKVIVPTPAYPPFFHLLSATQR-------------EGIFIDATGG----------- 137 (377)
T ss_dssp HHHHHHHHHHHHSC--------TTCCEEEEESCCTHHHHHHHHHTC-------------CEEEEECTTS-----------
T ss_pred hHHHHHHHHHHhcC--------CCCEEEEcCCCcHhHHHHHHHcCC-------------EEEEccCCCC-----------
Confidence 99999999997732 567899999999997544333222 3344444321
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccc-c-c---ccc
Q psy8199 403 IARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTG-K-F---FAC 477 (965)
Q Consensus 403 ~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G-~-~---~~~ 477 (965)
.|+++|++++++. ..++++++| +|++|.+. +.+.+++|.++|++||+++|+||+|++|++.| . . ...
T Consensus 138 ---~d~~~l~~~l~~~--~~~v~i~~p--~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~ 209 (377)
T 3fdb_A 138 ---INLHDVEKGFQAG--ARSILLCNP--YNPLGMVF-APEWLNELCDLAHRYDARVLVDEIHAPLVFDGQHTVAAGVSD 209 (377)
T ss_dssp ---CCHHHHHHHHHTT--CCEEEEESS--BTTTTBCC-CHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSCH
T ss_pred ---CCHHHHHHHhccC--CCEEEEeCC--CCCCCCCC-CHHHHHHHHHHHHHcCCEEEEEcccchhhcCCCCCcccHHHc
Confidence 2688999998742 335555555 89999866 67779999999999999999999999988777 2 2 122
Q ss_pred cccCCCcceeeeccccCCCcccceeeee-cHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc--ccHHHHH
Q psy8199 478 EHAEIWPDFLCLSKGITGGYLPLSLVMT-TDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK--DNILQRI 554 (965)
Q Consensus 478 ~~~~~~pDivt~sK~l~gG~~pig~v~~-~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~--~~~~~~~ 554 (965)
...+..+++.++||+++.+++++|++++ ++++++.+.. ..+..+++.|+++++++.++|+...+ +...+++
T Consensus 210 ~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~ 283 (377)
T 3fdb_A 210 TAASVCITITAPSKAWNIAGLKCAQIIFSNPSDAEHWQQ------LSPVIKDGASTLGLIAAEAAYRYGTDFLNQEVAYL 283 (377)
T ss_dssp HHHHHEEEEECSTTTTTCGGGCCEEEECCSHHHHHHHHH------SCHHHHCCCCHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred cCCCcEEEEEeChHhccCcchhheEEEeCCHHHHHHHHH------HHHhhcCCCCHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 1223335566899999643389997665 7888888765 23445788999999999999975322 3456667
Q ss_pred HHHHHHHHHHHHcccCCCceeeeeceeEEE-EEEEeecCccchhhHHHHHHHHHHHc-CcEEeec-------CCEEEEeC
Q psy8199 555 SQDMKKITKALTSLITHPKIINFRQKGMIW-AFDVIIEDPEQIETFSKKFFVAALKN-ELLLRPI-------GNTVYLMP 625 (965)
Q Consensus 555 ~~~~~~l~~~L~~l~~~~~i~~v~g~G~~~-~i~~~~~~~~~~~~~~~~~~~~l~~~-Gi~~~~~-------~~~lR~~p 625 (965)
+++.+++.+.|++. .|++..+.+.|.++ .+.+. ..+. . .++.+.++++ ||++.|+ .+++|+++
T Consensus 284 ~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~~~~~~-~~~~-~----~~~~~~l~~~~gi~v~~g~~~~~~~~~~~Ris~ 355 (377)
T 3fdb_A 284 KNNHDFLLHEIPKR--IPGAKITPMQATYLMWIDFR-DTTI-E----GSPSEFFIEKAKVAMNDGAWFGEDGTGFCRLNF 355 (377)
T ss_dssp HHHHHHHHHHHHHH--STTCEECCCSBCSEEEEECT-TSCC-C----SCHHHHHHHHHCEECEEGGGGCGGGTTEEEEEC
T ss_pred HHHHHHHHHHHHhh--CCCceEecCCeeEEEEEECc-ccCC-C----HHHHHHHHHhCCEEecCChhccCCCCCEEEEEe
Confidence 77777777777652 34566566666655 46554 1111 1 2345566655 9999874 37999996
Q ss_pred CcccCHHHHHHHHHhhhccc
Q psy8199 626 PYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 626 ~~~~t~~~i~~~~~~l~~~~ 645 (965)
+ .++++++++++++.+++
T Consensus 356 ~--~~~e~i~~~l~~l~~~l 373 (377)
T 3fdb_A 356 A--TSREVLEEAIDRMAKAV 373 (377)
T ss_dssp C--SCHHHHHHHHHHHHHHH
T ss_pred C--CCHHHHHHHHHHHHHHH
Confidence 6 48999999999887654
|
| >3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-27 Score=272.42 Aligned_cols=345 Identities=13% Similarity=0.051 Sum_probs=246.6
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcC--CCCCeEEEcCCh
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQ--YKLGHCFYGSDG 323 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~~~sG 323 (965)
+++||.+|++|||+..+ .+..+.+|+|.+|+.++++...+. ......+...++++.+++.++ .+.+++++++||
T Consensus 19 ~~~~d~~g~~~i~~~~~---~~~~~~~~~v~~a~~~~~~~~~~~-y~~~~~~l~~~la~~l~~~~g~~~~~~~i~~~~g~ 94 (391)
T 3dzz_A 19 SIKWGVLKEKELPMWIA---EMDFKIAPEIMASMEEKLKVAAFG-YESVPAEYYKAVADWEEIEHRARPKEDWCVFASGV 94 (391)
T ss_dssp BTTTTTCCTTCEECCSS---CCSSCCCHHHHHHHHHHHTTCCCC-CBCCCHHHHHHHHHHHHHHHSCCCCGGGEEEESCH
T ss_pred ccceeccCCCceecccc---CCCCCCCHHHHHHHHHHHhcCcCC-CCCCCHHHHHHHHHHHHHHhCCCCCHHHEEECCCH
Confidence 78999999999999877 234448999999999998764221 112256677888888888775 456799999999
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCC--CCCCCCCCCChh
Q psy8199 324 ASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTP--DSRNINKGNSAN 401 (965)
Q Consensus 324 seA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 401 (965)
++|++.+++.+. .++++|++.+++||++...+...+. .+..+|.. .....
T Consensus 95 ~~a~~~~~~~l~--------~~gd~vl~~~~~~~~~~~~~~~~g~-------------~~~~~~~~~~~~~~~------- 146 (391)
T 3dzz_A 95 VPAISAMVRQFT--------SPGDQILVQEPVYNMFYSVIEGNGR-------------RVISSDLIYENSKYS------- 146 (391)
T ss_dssp HHHHHHHHHHHS--------CTTCEEEECSSCCHHHHHHHHHTTC-------------EEEECCCEEETTEEE-------
T ss_pred HHHHHHHHHHhC--------CCCCeEEECCCCcHHHHHHHHHcCC-------------EEEEeeeeecCCcee-------
Confidence 999999999873 2568899999999997544433322 22333321 10000
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccc-ccccccc
Q psy8199 402 EIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK-FFACEHA 480 (965)
Q Consensus 402 ~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~-~~~~~~~ 480 (965)
.|+++|++++++ .++.+|+++. ++|++|.+. +.+.+++|.++|++||+++|+||+|++|++.|. ......+
T Consensus 147 ----~d~~~l~~~l~~--~~~~~v~i~~-p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~ 218 (391)
T 3dzz_A 147 ----VNWADLEEKLAT--PSVRMMVFCN-PHNPIGYAW-SEEEVKRIAELCAKHQVLLISDEIHGDLVLTDEDITPAFTV 218 (391)
T ss_dssp ----CCHHHHHHHHTS--TTEEEEEEES-SBTTTTBCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGS
T ss_pred ----ecHHHHHHHHhc--cCceEEEEEC-CCCCCCccc-CHHHHHHHHHHHHHCCCEEEEecccccccCCCCCceehhhc
Confidence 268899999863 3567777776 689999766 667799999999999999999999999987774 3344444
Q ss_pred CC-Ccc----eeeeccccC-CCcccceeeeec-HHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh--cccHH
Q psy8199 481 EI-WPD----FLCLSKGIT-GGYLPLSLVMTT-DKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN--KDNIL 551 (965)
Q Consensus 481 ~~-~pD----ivt~sK~l~-gG~~pig~v~~~-~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~--~~~~~ 551 (965)
+. .+| +.++||+++ +| +++|+++++ +++++.+... ..+.++++.++++++++.++|+... -+...
T Consensus 219 ~~~~~d~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~ 292 (391)
T 3dzz_A 219 DWDAKNWVVSLISPSKTFNLAA-LHAACAIIPNPDLRARAEES-----FFLAGIGEPNLLAIPAAIAAYEEGHDWLRELK 292 (391)
T ss_dssp CTTTGGGEEEEECSHHHHTCTT-TCCEEEECCSHHHHHHHHHH-----HHHHTCSSCCTTHHHHHHHHHHHCHHHHHHHH
T ss_pred CccccCcEEEEEeChhhccccc-hhheEEEECCHHHHHHHHHH-----HHhhccCCCCHHHHHHHHHHHhccHHHHHHHH
Confidence 32 377 457899987 55 799999997 8888877651 1124567889999999999997632 13456
Q ss_pred HHHHHHHHHHHHHHHcccCCCceeeeeceeEEE-EEEEeecCccchhhHHHHHHHHHH-HcCcEEeecC-------CEEE
Q psy8199 552 QRISQDMKKITKALTSLITHPKIINFRQKGMIW-AFDVIIEDPEQIETFSKKFFVAAL-KNELLLRPIG-------NTVY 622 (965)
Q Consensus 552 ~~~~~~~~~l~~~L~~l~~~~~i~~v~g~G~~~-~i~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~~-------~~lR 622 (965)
++++++.+++.+.|++. .|++..+.+.+.++ .+.+. ..+ .....+.+.|. ++||++.++. +++|
T Consensus 293 ~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iR 365 (391)
T 3dzz_A 293 QVLRDNFAYAREFLAKE--VPEVKVLDSNASYLAWVDIS-ALG----MNAEDFCKYLREKTGLIISAGNGYRGNGHEFVR 365 (391)
T ss_dssp HHHHHHHHHHHHHHHHH--CTTSEECCCCBSSEEEEECG-GGC----SCHHHHHHHHHHHHCEECEESGGGCTTGGGEEE
T ss_pred HHHHHHHHHHHHHHHhh--CCCcEEeccCceEEEEEehh-hcC----CCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEE
Confidence 66677777777777652 24555555555544 35553 110 11446778885 8999998732 6899
Q ss_pred EeCCcccCHHHHHHHHHhhhccc
Q psy8199 623 LMPPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 623 ~~p~~~~t~~~i~~~~~~l~~~~ 645 (965)
++++ .++++++++++++.+++
T Consensus 366 is~~--~~~~~i~~~l~~l~~~l 386 (391)
T 3dzz_A 366 INLA--CPKELVIDGMQRLKQGV 386 (391)
T ss_dssp EECC--SCHHHHHHHHHHHHHHH
T ss_pred EEec--CCHHHHHHHHHHHHHHH
Confidence 9966 78999999999887654
|
| >1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-26 Score=265.78 Aligned_cols=346 Identities=13% Similarity=0.046 Sum_probs=237.0
Q ss_pred cccccccccchhccCCCCCHHHHHHHHHHHhhc----cccccCCCCcHHHHHHHHHHHhhcC--CCCC-eEEEcCChhHH
Q psy8199 254 KRYLDAISSWWVNLFGHSNSYINKALKNQLNKL----EHVMLSNLTHKPVIKLSEKLSSLTQ--YKLG-HCFYGSDGASA 326 (965)
Q Consensus 254 ~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~----~~~~~~~~~~~~~~~la~~l~~~~~--~~~~-~v~~~~sGseA 326 (965)
..+|||.+|.. .+| .+|++.+|+.++++.. ..+....+..+....+++.+.+.++ .+.+ ++++++||++|
T Consensus 37 ~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a 113 (429)
T 1yiz_A 37 YKPLNLGQGFP--DYH-APKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEA 113 (429)
T ss_dssp HCCEECCSSSC--SSC-CCHHHHHHHHHHHTCSCGGGGSCCCSSCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHH
T ss_pred CCEEEecCCCC--CCC-CCHHHHHHHHHHHhccccCccCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcCCEEEecChHHH
Confidence 46899988754 567 6899999999998762 2232222345666777777766555 3567 99999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHH-H
Q psy8199 327 VEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIA-R 405 (965)
Q Consensus 327 ~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 405 (965)
++.+++++.. ++++|++.+++||++.......+. .+..+|....... ....... .
T Consensus 114 ~~~~~~~~~~--------~gd~Vl~~~p~y~~~~~~~~~~g~-------------~~~~~~~~~~~~~---~~~~~~~~~ 169 (429)
T 1yiz_A 114 LYATIQGHVD--------EGDEVIIIEPFFDCYEPMVKAAGG-------------IPRFIPLKPNKTG---GTISSADWV 169 (429)
T ss_dssp HHHHHHHHCC--------TTCEEEEEESCCTTHHHHHHHTTC-------------EEEEEECBCCCSS---SSEEGGGCB
T ss_pred HHHHHHHhcC--------CCCEEEEcCCCchhHHHHHHHcCC-------------EEEEEeCCccccc---ccccccCcc
Confidence 9999998732 458899999999998544332221 2233333211000 0000000 0
Q ss_pred HHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccc-ccccc----cc
Q psy8199 406 CAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK-FFACE----HA 480 (965)
Q Consensus 406 ~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~-~~~~~----~~ 480 (965)
.|+++|++++. +++++|++++ ++|++|.+. +++++++|.++|++||+++|+||+|++|++.|. ...+. ..
T Consensus 170 ~d~~~l~~~l~---~~~~~v~~~~-p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~ 244 (429)
T 1yiz_A 170 LDNNELEALFN---EKTKMIIINT-PHNPLGKVM-DRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMW 244 (429)
T ss_dssp CCHHHHHHHCC---TTEEEEEEES-SCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTSCCCCGGGSTTTG
T ss_pred cCHHHHHHHhc---cCceEEEECC-CCCCCCccC-CHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCcChhhccCCc
Confidence 36788888874 4678888887 799999775 688999999999999999999999999877664 22222 23
Q ss_pred CCCcceeeeccccC-CCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHH-----HhcccH----
Q psy8199 481 EIWPDFLCLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEI-----FNKDNI---- 550 (965)
Q Consensus 481 ~~~pDivt~sK~l~-gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~-----~~~~~~---- 550 (965)
+..+++.++||.++ .| +|+|++++++++++.+.. ..+..+++.++++++++.++|+. ...++.
T Consensus 245 ~~~~~~~s~sK~~~~~G-~r~G~~~~~~~~~~~l~~------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~ 317 (429)
T 1yiz_A 245 ERTITIGSAGKTFSLTG-WKIGWAYGPEALLKNLQM------VHQNCVYTCATPIQEAIAVGFETELKRLKSPECYFNSI 317 (429)
T ss_dssp GGEEEEEEHHHHHTCGG-GCCEEEESCHHHHHHHHH------HHHTTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHH
T ss_pred CceEEEecchhccCCCC-cceEEEEeCHHHHHHHHH------HHhhcccCCChHHHHHHHHHHhcccccccchHHHHHHH
Confidence 44455668999998 45 899999999999888765 23457889999999999999987 422333
Q ss_pred HHHHHHHHHHHHHHHHcccCCCceeeeec-eeEEEEEEEeecCccc-------hhhHHHHHHHHHH-HcCcEEeec----
Q psy8199 551 LQRISQDMKKITKALTSLITHPKIINFRQ-KGMIWAFDVIIEDPEQ-------IETFSKKFFVAAL-KNELLLRPI---- 617 (965)
Q Consensus 551 ~~~~~~~~~~l~~~L~~l~~~~~i~~v~g-~G~~~~i~~~~~~~~~-------~~~~~~~~~~~l~-~~Gi~~~~~---- 617 (965)
.++++++.+++.+.|+++ ++..+.+ .|+++++++. ..... .......+.+.|. ++||++.|+
T Consensus 318 ~~~~~~~~~~l~~~L~~~----g~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~~g~~f~ 392 (429)
T 1yiz_A 318 SGELMAKRDYMASFLAEV----GMNPTVPQGGYFMVADWS-SLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFY 392 (429)
T ss_dssp HHHHHHHHHHHHHHHHHH----TCEEEECSBSSEEEEECC-SSCTTTTCCSSSSSCHHHHHHHHHHHHTSEECBCGGGGS
T ss_pred HHHHHHHHHHHHHHHHhC----CCcccCCCcceEEEEEcc-cccccccccccccCCCHHHHHHHHHHhCCEEEeCchHhC
Confidence 444555666666666554 3333334 4667777775 11000 0012345777776 799999863
Q ss_pred --------CCEEEEeCCcccCHHHHHHHHHhhhccc
Q psy8199 618 --------GNTVYLMPPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 618 --------~~~lR~~p~~~~t~~~i~~~~~~l~~~~ 645 (965)
.+++||+++ .++++++++++++.+.+
T Consensus 393 ~~~~~~~~~~~iRis~~--~~~e~i~~~l~~l~~~l 426 (429)
T 1yiz_A 393 SEPNKHLGEDFVRYCFF--KKDENLQKAAEILRKWK 426 (429)
T ss_dssp CGGGGGGTTTEEEEECC--SCHHHHHHHHHHHHHHS
T ss_pred CCcccCCCCCeEEEEec--CCHHHHHHHHHHHHHhc
Confidence 469999977 48999999999987654
|
| >1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.3e-26 Score=259.23 Aligned_cols=331 Identities=14% Similarity=0.121 Sum_probs=241.8
Q ss_pred eEEEecCCcccccccccchhccCC-CCCHHHHHHHHHHHhhcccc-c---cCCCCcHHHHHHHHHHHhhcCCCCCeEEEc
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFG-HSNSYINKALKNQLNKLEHV-M---LSNLTHKPVIKLSEKLSSLTQYKLGHCFYG 320 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lG-h~~p~v~~av~~~~~~~~~~-~---~~~~~~~~~~~la~~l~~~~~~~~~~v~~~ 320 (965)
+|++ .+|+.|||+.++. ++| +.+|++.+|+.++++..... . ...+..+...++++.++++++ .++++++
T Consensus 32 ~~~~-~~g~~~id~~~~~---~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g--~~~~i~~ 105 (384)
T 1bs0_A 32 RWLV-ADDRQYLNFSSND---YLGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWLG--YSRALLF 105 (384)
T ss_dssp SEEE-ETTEEEEECSCCC---TTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHT--CSEEEEE
T ss_pred ceEE-ECCceEEEeeccC---ccCCCCCHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHHHHHHHhC--CCcEEEe
Confidence 6888 7999999998873 378 58999999999998763221 1 111345788999999999995 4578888
Q ss_pred CChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCCh
Q psy8199 321 SDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSA 400 (965)
Q Consensus 321 ~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (965)
+||++|+..+++.+. .+++.|++ +..+|+....++...|. .+..+|.
T Consensus 106 ~sGt~a~~~~~~~~~--------~~gd~v~~-~~~~~~~~~~~~~~~g~------------~~~~~~~------------ 152 (384)
T 1bs0_A 106 ISGFAANQAVIAAMM--------AKEDRIAA-DRLSHASLLEAASLSPS------------QLRRFAH------------ 152 (384)
T ss_dssp SCHHHHHHHHHHHHC--------CTTCEEEE-ETTCCHHHHHHHHTSSS------------EEEEECT------------
T ss_pred CCcHHHHHHHHHHhC--------CCCcEEEE-cccccHHHHHHHHHcCC------------CEEEeCC------------
Confidence 899999999998762 13455554 45556655444443331 2233332
Q ss_pred hHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEecccc-CC-Cccccccccc
Q psy8199 401 NEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAV-GC-GRTGKFFACE 478 (965)
Q Consensus 401 ~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-g~-gr~G~~~~~~ 478 (965)
.|+++|++++++..+.+++|++++ ++|++|.+.+ +++|.++|++||+++|+||+|. |+ +++|..+. +
T Consensus 153 -----~d~~~l~~~l~~~~~~~~~v~~~~-~~nptG~~~~----l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~-~ 221 (384)
T 1bs0_A 153 -----NDVTHLARLLASPCPGQQMVVTEG-VFSMDGDSAP----LAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSC-W 221 (384)
T ss_dssp -----TCHHHHHHHHHSCCSSCEEEEEES-BCTTTCCBCC----HHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHH-H
T ss_pred -----CCHHHHHHHHHhcCCCCeEEEEeC-CCCCCCCccC----HHHHHHHHHHcCcEEEEECCcccceecCCCCchH-H
Confidence 257889998876433478889998 8999999887 8999999999999999999995 42 44454332 4
Q ss_pred ccCCCccee--eeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc---ccHHHH
Q psy8199 479 HAEIWPDFL--CLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK---DNILQR 553 (965)
Q Consensus 479 ~~~~~pDiv--t~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~---~~~~~~ 553 (965)
.++..+|++ ++||.++. +.|++++++++++.+.... . .+..+++.|+++++++.++|+.+.+ ++..++
T Consensus 222 ~~~~~~di~~~s~sK~~~~---~GG~~~~~~~~~~~l~~~~--~--~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~ 294 (384)
T 1bs0_A 222 LQKVKPELLVVTFGKGFGV---SGAAVLCSSTVADYLLQFA--R--HLIYSTSMPPAQAQALRASLAVIRSDEGDARREK 294 (384)
T ss_dssp HTTCCCSEEEEESSSTTSS---CCEEEEECHHHHHHHHHHC--H--HHHSSBCCCHHHHHHHHHHHHHHHSHHHHHHHHH
T ss_pred hcCCCCcEEEeeccchhhc---cCcEEEeCHHHHHHHHHhc--h--hhhcCCCCCHHHHHHHHHHHHHHhccccHHHHHH
Confidence 566678988 89998863 4488999999988776411 1 1234457899999999999998763 357788
Q ss_pred HHHHHHHHHHHHHcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecC--------CEEEEeC
Q psy8199 554 ISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG--------NTVYLMP 625 (965)
Q Consensus 554 ~~~~~~~l~~~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~--------~~lR~~p 625 (965)
++++.+++.+.|+++ ++....+.|.++.+.+. + ......+.+.|.++||.+.+.. +++|+++
T Consensus 295 ~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~--~----~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~Ri~~ 364 (384)
T 1bs0_A 295 LAALITRFRAGVQDL----PFTLADSCSAIQPLIVG--D----NSRALQLAEKLRQQGCWVTAIRPPTVPAGTARLRLTL 364 (384)
T ss_dssp HHHHHHHHHHHHTTS----SCEECSCCSSBCCEEEE--S----HHHHHHHHHHHHHTTEECCEECTTSSCTTCEEECCBC
T ss_pred HHHHHHHHHHHHHhc----CCcccCCCCCEEEEEeC--C----HHHHHHHHHHHHHCCcEEEeecCCCCCCCCceEEEEE
Confidence 888999999888765 23323366777777764 2 1124568888999999998742 5899999
Q ss_pred CcccCHHHHHHHHHhhhc
Q psy8199 626 PYILNKNEIQHMTSAIFQ 643 (965)
Q Consensus 626 ~~~~t~~~i~~~~~~l~~ 643 (965)
+..+++++++++++++.+
T Consensus 365 ~~~~~~~~i~~~~~~l~~ 382 (384)
T 1bs0_A 365 TAAHEMQDIDRLLEVLHG 382 (384)
T ss_dssp CTTCCHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHh
Confidence 988899999999988764
|
| >1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-26 Score=262.18 Aligned_cols=342 Identities=12% Similarity=0.100 Sum_probs=228.0
Q ss_pred eEEEecCCc-----ccccccccchhccCCCCCHHHHHHHHHHHhhc-cccccCCCCcH-HHHHHHHHHHhhcC--CCCCe
Q psy8199 246 SKLITFSGK-----RYLDAISSWWVNLFGHSNSYINKALKNQLNKL-EHVMLSNLTHK-PVIKLSEKLSSLTQ--YKLGH 316 (965)
Q Consensus 246 ~~~~d~dG~-----~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~-~~~~~~~~~~~-~~~~la~~l~~~~~--~~~~~ 316 (965)
+++||.+|+ +|+||.++. ..+| .+|+|.+|+.++++.. ..+.. ...+ ....+++.+.+..+ .+.++
T Consensus 15 ~~~~d~~~~~~~~~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~y~~--~~~~~lr~~la~~l~~~~g~~~~~~~ 89 (390)
T 1d2f_A 15 CTQWDYVADRFGTADLLPFTISD--MDFA-TAPCIIEALNQRLMHGVFGYSR--WKNDEFLAAIAHWFSTQHYTAIDSQT 89 (390)
T ss_dssp ---------------CEECCSSS--CSSC-CCHHHHHHHHHHHTTCCCCCCC--SCCHHHHHHHHHHHHHHSCCCCCGGG
T ss_pred ccchhhhccccCCCCeeEeeecC--CCCC-CCHHHHHHHHHHHhCCCCCCCC--CChHHHHHHHHHHHHHhcCCCCCHHH
Confidence 789999998 789997764 4577 7899999999998753 22222 1455 67777777776655 45679
Q ss_pred EEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCC--CCC
Q psy8199 317 CFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDS--RNI 394 (965)
Q Consensus 317 v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 394 (965)
|++++||++|++.+++.+.. ++++|++.+++||++...+...+. .+..+|.... .+.
T Consensus 90 v~~t~g~~~al~~~~~~l~~--------~gd~vl~~~p~y~~~~~~~~~~g~-------------~~~~v~~~~~~~~~~ 148 (390)
T 1d2f_A 90 VVYGPSVIYMVSELIRQWSE--------TGEGVVIHTPAYDAFYKAIEGNQR-------------TVMPVALEKQADGWF 148 (390)
T ss_dssp EEEESCHHHHHHHHHHHSSC--------TTCEEEEEESCCHHHHHHHHHTTC-------------EEEEEECEECSSSEE
T ss_pred EEEcCCHHHHHHHHHHHhcC--------CCCEEEEcCCCcHHHHHHHHHCCC-------------EEEEeecccCCCccc
Confidence 99999999999999997632 458899999999998654433222 2233333210 000
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccccc
Q psy8199 395 NKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKF 474 (965)
Q Consensus 395 ~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~ 474 (965)
.|+++|++++++ .++++|++.. ++|++|.+. +.+++++|.++|++||+++|+||+|++|++.|..
T Consensus 149 -----------~d~~~l~~~l~~--~~~~~v~l~~-p~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~ 213 (390)
T 1d2f_A 149 -----------CDMGKLEAVLAK--PECKIMLLCS-PQNPTGKVW-TCDELEIMADLCERHGVRVISDEIHMDMVWGEQP 213 (390)
T ss_dssp -----------CCHHHHHHHHTS--TTEEEEEEES-SCTTTCCCC-CTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSC
T ss_pred -----------cCHHHHHHHhcc--CCCeEEEEeC-CCCCCCcCc-CHHHHHHHHHHHHHcCCEEEEEccccccccCCCC
Confidence 267889988863 2466666544 589999775 6778999999999999999999999998776653
Q ss_pred ccccccCCCc---c-eeeeccccC-CCcccceeeeec-HHHHHhhhccCCcccccc-cCCC-CCCHHHHHHHHHHHHHHh
Q psy8199 475 FACEHAEIWP---D-FLCLSKGIT-GGYLPLSLVMTT-DKIYNSIYYKNNINIFLH-SHSY-SGNPLACCAALATLEIFN 546 (965)
Q Consensus 475 ~~~~~~~~~p---D-ivt~sK~l~-gG~~pig~v~~~-~~i~~~~~~~~~~~~~~~-~~t~-~~~~~~~aaa~a~L~~~~ 546 (965)
+. ....+.+ | +.++||.++ +| +++|+++++ +++++.+.. ..+ ..++ +.|+++++++.++|+...
T Consensus 214 ~~-~~~~~~~~~~d~~~s~sK~~~~~G-~r~G~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~a~~~~l~~~~ 285 (390)
T 1d2f_A 214 HI-PWSNVARGDWALLTSGSKSFNIPA-LTGAYGIIENSSSRDAYLS------ALKGRDGLSSPSVLALTAHIAAYQQGA 285 (390)
T ss_dssp CC-CGGGTCCSSEEEEECSHHHHTCGG-GCCEEEEECSHHHHHHHHH------HHHTTSCCCSCCHHHHHHHHHHHHHCH
T ss_pred Cc-CHHHcchhhHhhccCccHhhcccC-hhheEEEECCHHHHHHHHH------HHhhhcccCCCCHHHHHHHHHHHhcCH
Confidence 21 1112222 3 778999997 56 799999985 788877754 223 4565 789999999999997522
Q ss_pred c--ccHHHHHHHHHHHHHHHHHcccCCCceeeeeceeEEE-EEEEeecCccchhhHHHHHHHHHH-HcCcEEeec-----
Q psy8199 547 K--DNILQRISQDMKKITKALTSLITHPKIINFRQKGMIW-AFDVIIEDPEQIETFSKKFFVAAL-KNELLLRPI----- 617 (965)
Q Consensus 547 ~--~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~G~~~-~i~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~----- 617 (965)
+ +...++++++.+++.+.|++. .|++..+++.|.++ ++.+. ..+ .....+.+.|. ++||++.++
T Consensus 286 ~~~~~~~~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~l~~~l~~~~gi~v~~g~~f~~ 358 (390)
T 1d2f_A 286 PWLDALRIYLKDNLTYIADKMNAA--FPELNWQIPQSTYLAWLDLR-PLN----IDDNALQKALIEQEKVAIMPGYTYGE 358 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--CSSCCCCCCSBCSEEEEECG-GGC----CCHHHHHHHHHHTTCEECEEGGGGCG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh--CCCCEEecCCccEEEEEEcc-ccC----CCHHHHHHHHHHHcCEEeeCccccCC
Confidence 1 234455666666676666551 34555556666554 46653 100 01346778888 689999874
Q ss_pred --CCEEEEeCCcccCHHHHHHHHHhhhccc
Q psy8199 618 --GNTVYLMPPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 618 --~~~lR~~p~~~~t~~~i~~~~~~l~~~~ 645 (965)
.+++|++++. ++++++++++++.+++
T Consensus 359 ~~~~~~Ris~~~--~~~~l~~~l~~l~~~l 386 (390)
T 1d2f_A 359 EGRGFVRLNAGC--PRSKLEKGVAGLINAI 386 (390)
T ss_dssp GGTTEEEEECCS--CHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEecC--CHHHHHHHHHHHHHHH
Confidence 3689999765 5788888888876554
|
| >4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=5.5e-27 Score=266.29 Aligned_cols=343 Identities=15% Similarity=0.093 Sum_probs=241.8
Q ss_pred eEEEecCCccc-----ccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcC--CCCCeEE
Q psy8199 246 SKLITFSGKRY-----LDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQ--YKLGHCF 318 (965)
Q Consensus 246 ~~~~d~dG~~y-----lD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~ 318 (965)
+++||.+|++| +|+.++ .+..+.+|+|.+|+.++++...+. ...+..+...++++.+++.++ .+.++++
T Consensus 19 ~~~~d~~~~~~~~~~~i~l~~~---~~~~~~~~~v~~a~~~~~~~~~~~-y~~~~~~~~~~l~~~l~~~~g~~~~~~~v~ 94 (391)
T 4dq6_A 19 SSKWSEMEKKYGTNDLLPMWVA---DMDFKAAPCIIDSLKNRLEQEIYG-YTTRPDSYNESIVNWLYRRHNWKIKSEWLI 94 (391)
T ss_dssp BHHHHCHHHHHSCSCSEECCSS---SCSSCCCHHHHHHHHHHHTTCCCC-CBCCCHHHHHHHHHHHHHHHCCCCCGGGEE
T ss_pred ceeeeecccccCCCCceecccc---CCCCCCCHHHHHHHHHHHhCCCCC-CCCCCHHHHHHHHHHHHHHhCCCCcHHHeE
Confidence 78999988766 898876 234457899999999998764221 223557788899999999886 5577999
Q ss_pred EcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCC--CCCCCCC
Q psy8199 319 YGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTP--DSRNINK 396 (965)
Q Consensus 319 ~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 396 (965)
+++||++|++.+++.+.. ++++|++.+++||++...+...+. .+..+|.. ......
T Consensus 95 ~~~g~~~a~~~~~~~~~~--------~gd~vl~~~~~~~~~~~~~~~~g~-------------~~~~~~~~~~~~~~~~- 152 (391)
T 4dq6_A 95 YSPGVIPAISLLINELTK--------ANDKIMIQEPVYSPFNSVVKNNNR-------------ELIISPLQKLENGNYI- 152 (391)
T ss_dssp EESCHHHHHHHHHHHHSC--------TTCEEEECSSCCTHHHHHHHHTTC-------------EEEECCCEECTTSCEE-
T ss_pred EcCChHHHHHHHHHHhCC--------CCCEEEEcCCCCHHHHHHHHHcCC-------------eEEeeeeeecCCCceE-
Confidence 999999999999997742 568899999999998554433322 22333332 100000
Q ss_pred CCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccccc-c
Q psy8199 397 GNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKF-F 475 (965)
Q Consensus 397 ~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~-~ 475 (965)
.|+++|++++++ +.+|+++. ++|++|.+. +.+.+++|.++|++||+++|+||+|++|++.|.. .
T Consensus 153 ---------~d~~~l~~~l~~----~~~v~i~~-p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~ 217 (391)
T 4dq6_A 153 ---------MDYEDIENKIKD----VKLFILCN-PHNPVGRVW-TKDELKKLGDICLKHNVKIISDEIHSDIILKKHKHI 217 (391)
T ss_dssp ---------CCHHHHHHHCTT----EEEEEEES-SBTTTTBCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCC
T ss_pred ---------eeHHHHHHHhhc----CCEEEEEC-CCCCCCcCc-CHHHHHHHHHHHHHcCCEEEeeccccccccCCCCcc
Confidence 267888888863 66666666 689999865 6777999999999999999999999998777652 2
Q ss_pred cccccC-----CCcceeeeccccC-CCcccceeeeecH-HHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh--
Q psy8199 476 ACEHAE-----IWPDFLCLSKGIT-GGYLPLSLVMTTD-KIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN-- 546 (965)
Q Consensus 476 ~~~~~~-----~~pDivt~sK~l~-gG~~pig~v~~~~-~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~-- 546 (965)
.+..++ ....+.++||+++ +| +++|++++++ ++++.+... ..+.++++.|+++++++.++|+...
T Consensus 218 ~~~~~~~~~~~~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~a~~~~l~~~~~~ 291 (391)
T 4dq6_A 218 PMASISKEFEKNTITCMAPTKTFNIAG-LQSSYVVLPDEKDYKLLDDA-----FTRIDIKRNNCFSLVATEASYNNGESW 291 (391)
T ss_dssp CGGGSCHHHHHTEEEEECSHHHHTCGG-GCCEEEECCSHHHHHHHHHH-----HHHTTCCCCCHHHHHHHHHHHHHCHHH
T ss_pred CHHHcCccccCcEEEEEechhhccCcc-cceEEEEeCCHHHHHHHHHH-----HHhhcCCCCCHHHHHHHHHHHhchHHH
Confidence 222221 1123447899987 45 8999999875 888877641 1234566889999999999997532
Q ss_pred cccHHHHHHHHHHHHHHHHHcccCCCceeeeeceeEEEE-EEEeecCccchhhHHHHHHHHHHHc-CcEEeec-------
Q psy8199 547 KDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWA-FDVIIEDPEQIETFSKKFFVAALKN-ELLLRPI------- 617 (965)
Q Consensus 547 ~~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~G~~~~-i~~~~~~~~~~~~~~~~~~~~l~~~-Gi~~~~~------- 617 (965)
-+...++++++.+++.+.|++. .|++..+.+.|.++. +.+. ..+ .....+.+.|.++ ||+++|+
T Consensus 292 ~~~~~~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~l~~~~gi~v~~g~~~~~~~ 364 (391)
T 4dq6_A 292 LESFLEYLESNIDFAIKYINEN--MPKLKVRKPEGTYLLWVDFS-ALG----LSDEELESILVQKGKVALNQGNSFGIGG 364 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--CTTSEECCCSBSSEEEEECG-GGC----CCHHHHHHHHHHTTCEECEEGGGGCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhh--CCCCEecCCCccEEEEEEhh-hcC----CCHHHHHHHHHHhCCEEeeCchhhCCCC
Confidence 1234555666666666666541 356666667776655 5553 101 1144678888888 9999873
Q ss_pred CCEEEEeCCcccCHHHHHHHHHhhhcc
Q psy8199 618 GNTVYLMPPYILNKNEIQHMTSAIFQT 644 (965)
Q Consensus 618 ~~~lR~~p~~~~t~~~i~~~~~~l~~~ 644 (965)
.+++|++++ .++++++++++++.++
T Consensus 365 ~~~iRis~~--~~~~~i~~~l~~l~~~ 389 (391)
T 4dq6_A 365 SGYQRINLA--CPRSMLEEALIRIKNA 389 (391)
T ss_dssp TTEEEEECC--SCHHHHHHHHHHHHHH
T ss_pred CCeEEEEEc--CCHHHHHHHHHHHHHH
Confidence 278999976 6899999999888654
|
| >3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.6e-26 Score=259.32 Aligned_cols=333 Identities=15% Similarity=0.130 Sum_probs=244.4
Q ss_pred eEEEecCCcccccccccchhccCCC-CCHHHHHHHHHHHhhccc-c---ccCCCCcHHHHHHHHHHHhhcCCCCCeEEEc
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGH-SNSYINKALKNQLNKLEH-V---MLSNLTHKPVIKLSEKLSSLTQYKLGHCFYG 320 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh-~~p~v~~av~~~~~~~~~-~---~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~ 320 (965)
+|++ .+|+.|+|+.+|.+ +|| .+|++.+++.++++.... + ....+..+...++++.+++.++ .++++++
T Consensus 36 ~~~~-~~g~~~idl~~~~~---~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g--~~~v~~~ 109 (398)
T 3a2b_A 36 TEVK-IDGRRVLMFGSNSY---LGLTTDTRIIKAAQDALEKYGTGCAGSRFLNGTLDIHVELEEKLSAYVG--KEAAILF 109 (398)
T ss_dssp SEEE-ETTEEEEECSCSCT---TCGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHT--CSEEEEE
T ss_pred ceEE-ECCceEEEeecccc---cCCCCCHHHHHHHHHHHHHcCCCCCCcCcccCCcHHHHHHHHHHHHHhC--CCcEEEE
Confidence 7899 89999999998733 788 799999999999876421 1 1223456888999999999985 5799999
Q ss_pred CChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCCh
Q psy8199 321 SDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSA 400 (965)
Q Consensus 321 ~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (965)
+||++|++.+++.+.. +++.|++.+++|.++ ..+....| ..+..+|.
T Consensus 110 ~ggt~a~~~~~~~~~~--------~gd~V~~~~p~~~~~-~~~~~~~g------------~~~~~v~~------------ 156 (398)
T 3a2b_A 110 STGFQSNLGPLSCLMG--------RNDYILLDERDHASI-IDGSRLSF------------SKVIKYGH------------ 156 (398)
T ss_dssp SSHHHHHHHHHHHSSC--------TTCEEEEETTCCHHH-HHHHHHSS------------SEEEEECT------------
T ss_pred CCHHHHHHHHHHHHhC--------CCCEEEECCccCHHH-HHHHHHcC------------CceEEeCC------------
Confidence 9999999999997732 456777777766544 33332222 12233333
Q ss_pred hHHHHHHHHHHHHHHHhCCC-cEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCC--Ccccccccc
Q psy8199 401 NEIARCAIFDLEILLKKNHN-KIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGC--GRTGKFFAC 477 (965)
Q Consensus 401 ~~~~~~d~~~le~~l~~~~~-~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~--gr~G~~~~~ 477 (965)
.|+++|++++++..+ ++++|++++ ++|++|.+.+ +++|.++|++||+++|+||+|..+ ++.+..+ .
T Consensus 157 -----~d~~~l~~~l~~~~~~~~~~v~~~~-~~nptG~~~~----~~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~-~ 225 (398)
T 3a2b_A 157 -----NNMEDLRAKLSRLPEDSAKLICTDG-IFSMEGDIVN----LPELTSIANEFDAAVMVDDAHSLGVIGHKGAGT-A 225 (398)
T ss_dssp -----TCHHHHHHHHHTSCSSSCEEEEEES-BCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCH-H
T ss_pred -----CCHHHHHHHHHhhccCCceEEEEeC-CCCCCCCccC----HHHHHHHHHHcCcEEEEECCCcccccCCCCCch-H
Confidence 267889999875432 678899999 8999998876 999999999999999999999633 3444322 3
Q ss_pred cccCCC--ccee--eeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc-ccHHH
Q psy8199 478 EHAEIW--PDFL--CLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK-DNILQ 552 (965)
Q Consensus 478 ~~~~~~--pDiv--t~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~-~~~~~ 552 (965)
+.+++. +|++ +|||.++.. -|++++++++++.+.... ..+..+...+++.++++.++|+.++. ++..+
T Consensus 226 ~~~~~~~~~di~~~s~sK~~~~~---GG~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~ 298 (398)
T 3a2b_A 226 SHFGLNDDVDLIMGTFSKSLASL---GGFVAGDADVIDFLKHNA----RSVMFSASMTPASVASTLKALEIIQNEPEHIE 298 (398)
T ss_dssp HHHTCGGGCSEEEEESSSTTCSS---CEEEEECHHHHHHHHHHC----HHHHSSBCCCHHHHHHHHHHHHHHHHCTHHHH
T ss_pred hhcCCCcCCeEEEecccccccCC---CcEEEeCHHHHHHHHHhc----ccceecCCCCHHHHHHHHHHHHHHhhCHHHHH
Confidence 444553 6888 789988742 188999999988776410 11344556678777778888887543 45788
Q ss_pred HHHHHHHHHHHHHHcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec--------CCEEEEe
Q psy8199 553 RISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI--------GNTVYLM 624 (965)
Q Consensus 553 ~~~~~~~~l~~~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~--------~~~lR~~ 624 (965)
+++++.+++.+.|+++ ++..+++.|.++.+.+. + ......+.+.|.++||.+.++ .+++|++
T Consensus 299 ~~~~~~~~l~~~L~~~----g~~~~~~~g~~~~~~~~--~----~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~iRis 368 (398)
T 3a2b_A 299 KLWKNTDYAKAQLLDH----GFDLGATESPILPIFIR--S----NEKTFWVTKMLQDDGVFVNPVVSPAVPAEESLIRFS 368 (398)
T ss_dssp HHHHHHHHHHHHHHHT----TCCBCSCCSSEEEEECC--C----HHHHHHHHHHHHHTTEECEEECTTTSCGGGCEEEEE
T ss_pred HHHHHHHHHHHHHHhc----CCCcCCCCCCEEEEEcC--C----HHHHHHHHHHHHHCCcEEEeeCCCCCCCCCceEEEE
Confidence 8899999999999875 33334566888887764 2 112456888899999999875 2689999
Q ss_pred CCcccCHHHHHHHHHhhhccc
Q psy8199 625 PPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 625 p~~~~t~~~i~~~~~~l~~~~ 645 (965)
++..+++++++++++++.+.+
T Consensus 369 ~~~~~~~e~i~~~~~~l~~~l 389 (398)
T 3a2b_A 369 LMATHTYDQIDEAIEKMVKVF 389 (398)
T ss_dssp CCTTCCHHHHHHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHHHHHHHH
Confidence 988889999999999987654
|
| >2gml_A Ribosomal large subunit pseudouridine synthase F; RLUF, ribosome, RNA modifying enzyme, isomerase; 2.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.7e-28 Score=246.46 Aligned_cols=139 Identities=21% Similarity=0.203 Sum_probs=110.4
Q ss_pred cCcEEEEECCCCCeeeeCCCCCcccHHHHHHHHCCcccCCCCccccccCCCCCceEEEeEeCHHHHHHHHHHHHcCCcCe
Q psy8199 35 DNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQR 114 (965)
Q Consensus 35 ~~~~lv~nKP~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~RLD~~tsGlll~a~~~~~~~~l~~~~~~~~~~K 114 (965)
+++|+|+|||+|++|++.+. ...++++++.. ..++++|||||++||||||||+|++++++|++ +++.++|
T Consensus 13 ~~~~lvlnKPaG~vs~~~~~-~~~tv~dll~~-------~~rl~~VgRLD~dTSGLLLlT~dg~~a~~L~~--p~~~v~K 82 (237)
T 2gml_A 13 DLVLIALNKPVGIVSTTEDG-ERDNIVDFVNH-------SKRVFPIGRLDKDSQGLIFLTNHGDLVNKILR--AGNDHEK 82 (237)
T ss_dssp CCCEEEEEECTTCBCCSSSS-CSSBHHHHSCC-------SSCCEEESCCCTTCEEEEEEESCHHHHHHHHH--HHHHSCE
T ss_pred CCEEEEEECCCCCEeCCCCC-CCCCHHHHhhc-------cCCeeEecCCCCCCeeEEEEEcCHHHHHHHhC--ccCCCCE
Confidence 56799999999999998765 46788886632 23689999999999999999999999999999 7888999
Q ss_pred EEEEEEcCccCCCce--EeeccccCCCCCeeEEEccCCCCcceEEEEEEeEEeeccCCcEEEEEEEeCCCcccHHHHHHH
Q psy8199 115 KYLAMVWGIPKLNGM--INAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQ 192 (965)
Q Consensus 115 ~Y~a~v~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~s~~~~~~~tGr~hQIR~~~~ 192 (965)
+|+|+|.|.++++.. +..++. + .+++.+.+.++++. .++++|+|.|||+||||+||+
T Consensus 83 ~Y~a~V~G~~~~~~i~~l~~Gv~----------l---~~~~~~~a~~~~l~--------~s~l~i~L~tGR~HQIRr~~a 141 (237)
T 2gml_A 83 EYLVTVDKPITEEFIRGMSAGVP----------I---LGTVTKKCKVKKEA--------PFVFRITLVQGLNRQIRRMCE 141 (237)
T ss_dssp EEEEEESSCCCHHHHHHHSSCCE----------E---TTEECCCCEEEEEE--------TTEEEEEECCCSTTHHHHHHH
T ss_pred EEEEEEcccCCHHHHHHHHcCeE----------e---CCcccccEEEEEeC--------CEEEEEEEecCCcHHHHHHHH
Confidence 999999998875421 111111 1 12233344555553 379999999999999999999
Q ss_pred HhCCceecCCCC
Q psy8199 193 WLGHGIVGDNLY 204 (965)
Q Consensus 193 ~~g~pi~gD~~~ 204 (965)
++||||+||..+
T Consensus 142 ~lG~pV~~L~R~ 153 (237)
T 2gml_A 142 HFGYEVKKLERT 153 (237)
T ss_dssp HTTCCEEEEEEE
T ss_pred HcCCCEeeeEEE
Confidence 999999999776
|
| >3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} | Back alignment and structure |
|---|
Probab=99.94 E-value=6.7e-26 Score=257.83 Aligned_cols=341 Identities=12% Similarity=0.024 Sum_probs=238.7
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCC---CCC-eEEEcC
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQY---KLG-HCFYGS 321 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~---~~~-~v~~~~ 321 (965)
.+++|.+|+++|||.+|. ..++ .+|.|.+|+.++++....+....+..+...++++.+.+.++. +.+ ++++++
T Consensus 22 ~~~~~~~g~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~~~i~~t~ 98 (396)
T 3jtx_A 22 QGISAPEGMEAVPLHIGE--PKHP-TPKVITDALTASLHELEKYPLTAGLPELRQACANWLKRRYDGLTVDADNEILPVL 98 (396)
T ss_dssp TTCCCCTTCCCEECSCCS--CCSC-CCHHHHHHHHHTGGGGGSCCCTTCCHHHHHHHHHHHHHHTTTCCCCTTTSEEEES
T ss_pred HhhhhccCCCeEEeCCcC--CCCC-CCHHHHHHHHHHhhhccCCCCCCCcHHHHHHHHHHHHHhcCCCCCCCCCeEEEcC
Confidence 557789999999999886 3455 689999999998876555544445677888899988887663 467 999999
Q ss_pred ChhHHHHHHHHHHHHHHHhcCCCCc----eEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCC
Q psy8199 322 DGASAVEVALKMSFHYWYNKGFLNK----KKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKG 397 (965)
Q Consensus 322 sGseA~~~Al~~a~~~~~~~g~~~~----~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (965)
||++|++.+++.+.. +++ ++|++.+++||++.......+. .+..+|.+.....
T Consensus 99 g~~~al~~~~~~~~~-------~g~~~~~d~vl~~~p~~~~~~~~~~~~g~-------------~~~~v~~~~~g~~--- 155 (396)
T 3jtx_A 99 GSREALFSFVQTVLN-------PVSDGIKPAIVSPNPFYQIYEGATLLGGG-------------EIHFANCPAPSFN--- 155 (396)
T ss_dssp SHHHHHHHHHHHHCC-------C---CCCCEEEEEESCCHHHHHHHHHTTC-------------EEEEEECCTTTCC---
T ss_pred CcHHHHHHHHHHHhC-------CCCccCCCEEEEcCCCcHhHHHHHHHcCC-------------EEEEeecCCCCCc---
Confidence 999999999998743 232 7899999999988554433322 2334443211111
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccc-cccc
Q psy8199 398 NSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTG-KFFA 476 (965)
Q Consensus 398 ~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G-~~~~ 476 (965)
.|+++|++++.+ ++.+|+++. ++|++|.+. +.+.+++|.++|++||+++|+||+|++|.+.| ....
T Consensus 156 --------~d~~~l~~~~~~---~~~~v~l~~-p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~ 222 (396)
T 3jtx_A 156 --------PDWRSISEEVWK---RTKLVFVCS-PNNPSGSVL-DLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNKPLG 222 (396)
T ss_dssp --------CCGGGSCHHHHH---TEEEEEEES-SCTTTCCCC-CHHHHHHHHHHHHHHCCEEEEECTTTTCCSTTCCCCC
T ss_pred --------cCHHHHHHhhcc---CcEEEEEEC-CCCCCCCcC-CHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCch
Confidence 156777777764 456666655 589999876 66679999999999999999999999988776 3332
Q ss_pred cc--------ccCCCcceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh-c
Q psy8199 477 CE--------HAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN-K 547 (965)
Q Consensus 477 ~~--------~~~~~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~-~ 547 (965)
.. ..+..+++.+|||+++.+++++|++++++++++.+.. ..+..+++.++++++++.++|+..+ -
T Consensus 223 ~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~a~~~~l~~~~~~ 296 (396)
T 3jtx_A 223 CLQAAAQLGRSRQKLLMFTSLSKRSNVPGLRSGFVAGDAELLKNFLL------YRTYHGSAMSIPVQRASIAAWDDEQHV 296 (396)
T ss_dssp HHHHHHHTTCCCTTEEEEEESTTTSSCGGGCCEEEEECHHHHHHHHH------HHHHHTCCCCHHHHHHHHHHHHCCHHH
T ss_pred HHhhhhhcccccCcEEEEeccccccCCcccceEEEEeCHHHHHHHHH------HHhhcccCCCHHHHHHHHHHhCCHHHH
Confidence 21 1344456668999865433899999999999988865 2345678899999999999986311 0
Q ss_pred ccHHHHHHHHHHHHHHHHHcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHH-HcCcEEeec---------
Q psy8199 548 DNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAAL-KNELLLRPI--------- 617 (965)
Q Consensus 548 ~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~--------- 617 (965)
+...++++++.+++.+.|++. ..+. ....|.++++.+. . .....+.+.|. ++||++.|+
T Consensus 297 ~~~~~~~~~~~~~l~~~l~~~---~~~~-~~~~~~~~~~~~~--~-----~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~ 365 (396)
T 3jtx_A 297 IDNRRLYQEKFERVIPILQQV---FDVK-LPDASFYIWLKVP--D-----GDDLAFARNLWQKAAIQVLPGRFLARDTEQ 365 (396)
T ss_dssp HHHHHHHHHHHHHHHHHHTTT---SCCC-CCSSSSEEEEECT--T-----SCHHHHHHHHHHHHCEECEEGGGGCCCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHhc---CCcc-CCCeeEEEEEECC--C-----CCHHHHHHHHHHHCCEEEeCChHhCCcccc
Confidence 223445555555666666543 1111 1233667777664 1 11345667774 579999763
Q ss_pred ----CCEEEEeCCcccCHHHHHHHHHhhhcc
Q psy8199 618 ----GNTVYLMPPYILNKNEIQHMTSAIFQT 644 (965)
Q Consensus 618 ----~~~lR~~p~~~~t~~~i~~~~~~l~~~ 644 (965)
.+++||+++ .++++++++++++.+.
T Consensus 366 ~~~~~~~iRis~~--~~~~~i~~~l~~l~~~ 394 (396)
T 3jtx_A 366 GNPGEGYVRIALV--ADVATCVKAAEDIVSL 394 (396)
T ss_dssp CCTTTTEEEEECC--SCHHHHHHHHHHHHHH
T ss_pred cCCCCCeEEEEEc--CCHHHHHHHHHHHHHH
Confidence 269999965 4999999999988754
|
| >3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.9e-26 Score=262.22 Aligned_cols=348 Identities=11% Similarity=0.069 Sum_probs=240.0
Q ss_pred CCcccccccccchhccCCCCCHHHHHHHHHHHhh--ccccccCCCCcHHHHHHHHHHHhhcCC--CCCeEEEcCChhHHH
Q psy8199 252 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNK--LEHVMLSNLTHKPVIKLSEKLSSLTQY--KLGHCFYGSDGASAV 327 (965)
Q Consensus 252 dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~--~~~~~~~~~~~~~~~~la~~l~~~~~~--~~~~v~~~~sGseA~ 327 (965)
.|+.++||.+|.+ .++ .+|.+.+|+.++++. ..+|....+..+....+++.+.+.++. +.++|++++||++|+
T Consensus 55 ~~~~~i~l~~g~~--~~~-~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~v~~t~G~~~al 131 (447)
T 3b46_A 55 QGRELINLGQGFF--SYS-PPQFAIKEAQKALDIPMVNQYSPTRGRPSLINSLIKLYSPIYNTELKAENVTVTTGANEGI 131 (447)
T ss_dssp TTSCCEECCCCSC--SSC-CCHHHHHHHHHHTTSGGGGSCCCTTCCHHHHHHHHHHHTTTTTSCCCGGGEEEESHHHHHH
T ss_pred cCCCeEEccCCCC--CCC-CCHHHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHH
Confidence 5789999998864 455 689999999999876 233433334566777888888776653 346899999999999
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCC-CCCCCCChhHHHHH
Q psy8199 328 EVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSR-NINKGNSANEIARC 406 (965)
Q Consensus 328 ~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 406 (965)
+.+++.+.. ++++|++.+++||++...+...+. .+..+|..... +.........+ ..
T Consensus 132 ~~~~~~l~~--------~gd~Vlv~~p~y~~~~~~~~~~g~-------------~~~~v~~~~~~~~~~~~~~~~~~-~~ 189 (447)
T 3b46_A 132 LSCLMGLLN--------AGDEVIVFEPFFDQYIPNIELCGG-------------KVVYVPINPPKELDQRNTRGEEW-TI 189 (447)
T ss_dssp HHHHHHHCC--------TTCEEEEEESCCTTHHHHHHHTTC-------------EEEEEEEECCGGGGTSCBCSTTS-EE
T ss_pred HHHHHHHcC--------CCCEEEEeCCCchhHHHHHHHcCC-------------EEEEEeCCCccccccccccccCc-cc
Confidence 999998742 568999999999998554433322 12223221100 00000000000 03
Q ss_pred HHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccccccccc-----ccC
Q psy8199 407 AIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACE-----HAE 481 (965)
Q Consensus 407 d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~-----~~~ 481 (965)
|+++|++++. +++++|++++ ++|++|.+. +.+++++|.++|++||+++|+||+|++|.+.|...... ..+
T Consensus 190 d~~~l~~~l~---~~~~~v~l~~-p~nptG~~~-~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~ 264 (447)
T 3b46_A 190 DFEQFEKAIT---SKTKAVIINT-PHNPIGKVF-TREELTTLGNICVKHNVVIISDEVYEHLYFTDSFTRIATLSPEIGQ 264 (447)
T ss_dssp CHHHHHTTCC---TTEEEEEEES-SCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCHHHHT
T ss_pred CHHHHHHhhc---cCCeEEEEeC-CCCCCCccc-CHHHHHHHHHHHHHcCcEEEEeccchhcccCCCCcCHHHcCCCCCC
Confidence 6788887774 4577777777 799999865 68899999999999999999999999987766322221 235
Q ss_pred CCcceeeeccccC-CCcccceeeee-cHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhccc----HHHHHH
Q psy8199 482 IWPDFLCLSKGIT-GGYLPLSLVMT-TDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDN----ILQRIS 555 (965)
Q Consensus 482 ~~pDivt~sK~l~-gG~~pig~v~~-~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~----~~~~~~ 555 (965)
..+.+.++||.++ .| +++|++++ ++++++.+.. ..+..+++.++++++++.++|+....++ ..++++
T Consensus 265 ~~i~i~S~sK~~~~~G-~riG~~~~~~~~l~~~l~~------~~~~~~~~~~~~~~~a~~~aL~~~~~~~~~~~~~~~~~ 337 (447)
T 3b46_A 265 LTLTVGSAGKSFAATG-WRIGWVLSLNAELLSYAAK------AHTRICFASPSPLQEACANSINDALKIGYFEKMRQEYI 337 (447)
T ss_dssp TEEEEEEHHHHTTCTT-SCCEEEECSCHHHHHHHHH------HHHHHTSSCCHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred cEEEEecCchhcCCcc-hhhEEEEeCCHHHHHHHHH------HHhhccCCCChHHHHHHHHHHhCCcchHHHHHHHHHHH
Confidence 5566678999997 45 89999999 9999888765 2345678889999999999998753233 556677
Q ss_pred HHHHHHHHHHHcccCCCceeee-eceeEEEEEEEeecCccch----------hhHHHHHHHHHH-HcCcEEeec------
Q psy8199 556 QDMKKITKALTSLITHPKIINF-RQKGMIWAFDVIIEDPEQI----------ETFSKKFFVAAL-KNELLLRPI------ 617 (965)
Q Consensus 556 ~~~~~l~~~L~~l~~~~~i~~v-~g~G~~~~i~~~~~~~~~~----------~~~~~~~~~~l~-~~Gi~~~~~------ 617 (965)
++.+++.+.|+++ ++..+ +..|.++++++. ....+. ......+.+.|. ++||++.|+
T Consensus 338 ~~~~~l~~~L~~~----g~~~~~~~~g~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~ 412 (447)
T 3b46_A 338 NKFKIFTSIFDEL----GLPYTAPEGTYFVLVDFS-KVKIPEDYPYPEEILNKGKDFRISHWLINELGVVAIPPTEFYIK 412 (447)
T ss_dssp HHHHHHHHHHHHH----TCCEECCSBSSEEEEECT-TCCCCTTCCCCGGGSSSCHHHHHHHHHHHHTCEECBCGGGGSCG
T ss_pred HHHHHHHHHHHHC----CCeecCCCeeEEEEEecc-cccCccccccccccccCCCHHHHHHHHHHhCCEEEECchHhCCC
Confidence 7777777777765 23333 334667777664 110000 012346777776 689999864
Q ss_pred ------CCEEEEeCCcccCHHHHHHHHHhhhc
Q psy8199 618 ------GNTVYLMPPYILNKNEIQHMTSAIFQ 643 (965)
Q Consensus 618 ------~~~lR~~p~~~~t~~~i~~~~~~l~~ 643 (965)
.+++||+++ .++++++++++++.+
T Consensus 413 ~~~~~~~~~iRls~~--~~~e~l~~~~~~l~~ 442 (447)
T 3b46_A 413 EHEKAAENLLRFAVC--KDDAYLENAVERLKL 442 (447)
T ss_dssp GGGGGGTTEEEEECC--SCHHHHHHHHHHGGG
T ss_pred CccCCCCCEEEEEEe--CCHHHHHHHHHHHHH
Confidence 478999976 589999999999876
|
| >1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.9e-26 Score=262.71 Aligned_cols=345 Identities=14% Similarity=0.035 Sum_probs=234.0
Q ss_pred eEEEecCCc-------ccccccccchhccCCCCCHHHHHHHHHHHhhc-cccccCCCCcHHHHHHHHHHHhhcC--CCCC
Q psy8199 246 SKLITFSGK-------RYLDAISSWWVNLFGHSNSYINKALKNQLNKL-EHVMLSNLTHKPVIKLSEKLSSLTQ--YKLG 315 (965)
Q Consensus 246 ~~~~d~dG~-------~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~-~~~~~~~~~~~~~~~la~~l~~~~~--~~~~ 315 (965)
+++||.+|+ .++||.++. ..++ .+|++.+++.++++.. ..+.. ...+....+++.+.+.++ .+.+
T Consensus 16 ~~~~d~~g~~~g~~~~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~y~~--~~~~l~~~la~~l~~~~g~~~~~~ 90 (399)
T 1c7n_A 16 SLKWDLMYSQNPEVGNEVVPLSVAD--MEFK-NPPELIEGLKKYLDETVLGYTG--PTEEYKKTVKKWMKDRHQWDIQTD 90 (399)
T ss_dssp BHHHHHHHHHCTTCCTTCCCCCSSS--CSSC-CCHHHHHHHHHHHHHCCCSSBC--CCHHHHHHHHHHHHHHHCCCCCGG
T ss_pred ccccccchhhccccCCCceeeeecC--CCCC-CCHHHHHHHHHHHhcCCCCCCC--CcHHHHHHHHHHHHHHhCCCCChh
Confidence 789999985 789997764 4455 6899999999998653 22221 145566667766666555 4567
Q ss_pred eEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCC
Q psy8199 316 HCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNIN 395 (965)
Q Consensus 316 ~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (965)
++++++||++|++.+++.+.. ++++|++.+++||++...+...+. .+..+|.....+.
T Consensus 91 ~v~~t~g~~~a~~~~~~~l~~--------~gd~vl~~~p~~~~~~~~~~~~g~-------------~~~~~~~~~~~g~- 148 (399)
T 1c7n_A 91 WIINTAGVVPAVFNAVREFTK--------PGDGVIIITPVYYPFFMAIKNQER-------------KIIECELLEKDGY- 148 (399)
T ss_dssp GEEEESSHHHHHHHHHHHHCC--------TTCEEEECSSCCTHHHHHHHTTTC-------------EEEECCCEEETTE-
T ss_pred hEEEcCCHHHHHHHHHHHhcC--------CCCEEEEcCCCcHhHHHHHHHcCC-------------EEEecccccCCCC-
Confidence 999999999999999997632 468899999999998655443322 1222332100000
Q ss_pred CCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccc-c
Q psy8199 396 KGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK-F 474 (965)
Q Consensus 396 ~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~-~ 474 (965)
+ ..|+++|++++++ .++++|++.. ++|++|.+. +++++++|.++|++||+++|+||+|++|++.|. .
T Consensus 149 -------~-~~d~~~l~~~l~~--~~~~~v~~~~-~~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~ 216 (399)
T 1c7n_A 149 -------Y-TIDFQKLEKLSKD--KNNKALLFCS-PHNPVGRVW-KKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEH 216 (399)
T ss_dssp -------E-ECCHHHHHHHHTC--TTEEEEEEES-SBTTTTBCC-CHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCC
T ss_pred -------E-EEcHHHHHHHhcc--CCCcEEEEcC-CCCCCCcCc-CHHHHHHHHHHHHHcCCEEEEEccccccccCCCCc
Confidence 0 0267899988863 3566666665 688899765 788999999999999999999999999877664 2
Q ss_pred cccccc-----CCCcceeeeccccC-CCcccceeeeec-HHHHHhhhccCCcccccccCCC-CCCHHHHHHHHHHHHHHh
Q psy8199 475 FACEHA-----EIWPDFLCLSKGIT-GGYLPLSLVMTT-DKIYNSIYYKNNINIFLHSHSY-SGNPLACCAALATLEIFN 546 (965)
Q Consensus 475 ~~~~~~-----~~~pDivt~sK~l~-gG~~pig~v~~~-~~i~~~~~~~~~~~~~~~~~t~-~~~~~~~aaa~a~L~~~~ 546 (965)
.....+ +....+.++||.++ +| +++|+++++ +++++.+.. .....++ +.|+++++++.++|+...
T Consensus 217 ~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~~l~~------~~~~~~~~~~~~~~~~a~~~~l~~~~ 289 (399)
T 1c7n_A 217 TVFQSIDEQLADKTITFTAPSKTFNIAG-MGMSNIIIKNPDIRERFTK------SRDATSGMPFTTLGYKACEICYKECG 289 (399)
T ss_dssp CCGGGSCHHHHTTEEEEECSHHHHTCGG-GCCEEEECCCHHHHHHHHH------HHHHTTCCCCCHHHHHHHHHHHHHCH
T ss_pred ccHHHcCccccCcEEEEEeChhhccccc-hheEEEEECCHHHHHHHHH------HHhhcccCCCCHHHHHHHHHHHhCCh
Confidence 223222 22233457899987 56 799999997 678887764 1233334 579999999999997431
Q ss_pred c--ccHHHHHHHHHHHHHHHHHcccCCCceeeeeceeEEE-EEEEeecCccchhhHHHHHHHHHH-HcCcEEeec-----
Q psy8199 547 K--DNILQRISQDMKKITKALTSLITHPKIINFRQKGMIW-AFDVIIEDPEQIETFSKKFFVAAL-KNELLLRPI----- 617 (965)
Q Consensus 547 ~--~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~G~~~-~i~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~----- 617 (965)
+ +...++++++.+++.+.|++. .|++..+++.|.++ ++.+. ..+ .....+.+.|. ++||++.|+
T Consensus 290 ~~~~~~~~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~l~~~~gi~v~~g~~~~~ 362 (399)
T 1c7n_A 290 KWLDGCIKVIDKNQRIVKDFFEVN--HPEIKAPLIEGTYLQWIDFR-ALK----MDHKAMEEFMIHKAQIFFDEGYIFGD 362 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--CTTSBCCCCSBSSEEEEECG-GGC----CCHHHHHHHHHHTTCCCCEEGGGGCG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh--CCCCeEecCCceEEEEEEcc-cCC----CCHHHHHHHHHHhCCEEEeCccccCC
Confidence 1 223445566666666666541 35555566666655 46653 100 01346778887 789999874
Q ss_pred --CCEEEEeCCcccCHHHHHHHHHhhhccc
Q psy8199 618 --GNTVYLMPPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 618 --~~~lR~~p~~~~t~~~i~~~~~~l~~~~ 645 (965)
.+++|++++. .+++++++++++.+.+
T Consensus 363 ~~~~~iRis~~~--~~~~l~~~l~~l~~~l 390 (399)
T 1c7n_A 363 GGIGFERINLAA--PSSVIQESLERLNKAL 390 (399)
T ss_dssp GGTTEEEEECCS--CHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEecc--CHHHHHHHHHHHHHHH
Confidence 3689999764 4788998888876554
|
| >3dh3_A Ribosomal large subunit pseudouridine synthase F; protein-RNA complex, S4 domain, alpha/beta protein, isomerase, RNA-binding, rRNA processing; HET: FHU; 3.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.8e-28 Score=254.98 Aligned_cols=170 Identities=19% Similarity=0.126 Sum_probs=124.1
Q ss_pred cccCCEEEEEcCCCCCCCCcccccCCCccEE---EecCcEEEEECCCCCeeeeCCCCCcccHHHHHHHHCCcccCCCCcc
Q psy8199 2 IISGYELIIIKPKKNFFLNKTEKKVIKLDII---YEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAG 78 (965)
Q Consensus 2 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~---~e~~~~lv~nKP~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 78 (965)
|.+|+++ + .+...+... +.+......+. |||++|+|+|||+|++||+.+.. ..++++.+.. ..+++
T Consensus 33 V~VNG~~-v-~~~~~V~~g-D~I~v~~~~i~~~~~ed~~~lvvnKP~G~~~~~~~~~-~~tl~~~l~~-------~~~~~ 101 (290)
T 3dh3_A 33 VFLNGKR-A-TIGDQVKPG-DVVKVNGQLIEPREAEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNH-------SKRVF 101 (290)
T ss_dssp EEETTEE-C-CTTCEECTT-CCEEETTEEECCCCGGGCCEEEEEECTTCBCCCCSSC-TTBHHHHHTC-------SSCCE
T ss_pred EEECCEE-c-cCCcCcCCC-CEEEeccccccccccccceEEEEECCCccccCCCCCC-CCcHHHHhhc-------cCcee
Confidence 4566665 3 444444433 22222222222 58999999999999999987755 5688887743 24789
Q ss_pred ccccCCCCCceEEEeEeCHHHHHHHHHHHHcCCcCeEEEEEEcCccCCCce--EeeccccCCCCCeeEEEccCCCCcceE
Q psy8199 79 IVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGM--INAAIMRNPHNRIKMTVSKNFNAKPAL 156 (965)
Q Consensus 79 ~v~RLD~~tsGlll~a~~~~~~~~l~~~~~~~~~~K~Y~a~v~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (965)
+|||||++||||||||+|++++++|++ +.+.++|+|+|+|.|.++++.. +..++..+. ...+++.
T Consensus 102 ~VhRLD~dTSGLllla~d~~~~~~L~~--~~~~v~K~Y~a~V~G~~~~~~i~~l~~Gv~l~~-----------~~~~~~~ 168 (290)
T 3dh3_A 102 PIGRLDKDSQGLIFLTNHGDLVNKILR--AGNDHEKEYLVTVDKPITEEFIRGMSAGVPILG-----------TVTKKCK 168 (290)
T ss_dssp ESSCCCTTCEEEEEEESCTTHHHHHHC--GGGCCCEEEEEEESSCCCHHHHHHHHTCCBCSS-----------SBCCCCE
T ss_pred eeccCCCCCcceEEEcCCHHHHHHHHH--hhCCcCEEEEEEECCCCCHHHHHHHhcCcccCC-----------cccceEE
Confidence 999999999999999999999999998 6889999999999998876421 122222110 0122333
Q ss_pred EEEEEeEEeeccCCcEEEEEEEeCCCcccHHHHHHHHhCCceecCCCCC
Q psy8199 157 TYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYG 205 (965)
Q Consensus 157 t~~~~~~~~~~~~~~~s~~~~~~~tGr~hQIR~~~~~~g~pi~gD~~~~ 205 (965)
++. .+.++++|+|.|||+||||+||+++||||+++..+.
T Consensus 169 --v~~--------~~~~~l~l~l~tGR~HQIR~~~~~lG~pV~~L~R~~ 207 (290)
T 3dh3_A 169 --VKK--------EAPFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTR 207 (290)
T ss_dssp --EEE--------CSSSEEEEEESCCCTTHHHHHHHHTTCCEEEEEEEE
T ss_pred --EEE--------cCCeEEEEEEeCCCChHHHHHHHHcCCeEEEeEEEE
Confidence 222 234799999999999999999999999999998874
|
| >2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.94 E-value=9.3e-26 Score=257.99 Aligned_cols=341 Identities=13% Similarity=0.076 Sum_probs=230.2
Q ss_pred ecCCcccccccccchhccCCCCCHHHHHHHHHHHhhcc--ccccCCCCcHHHHHHHHHHHhhcCC--CC-CeEEEcCChh
Q psy8199 250 TFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLE--HVMLSNLTHKPVIKLSEKLSSLTQY--KL-GHCFYGSDGA 324 (965)
Q Consensus 250 d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~--~~~~~~~~~~~~~~la~~l~~~~~~--~~-~~v~~~~sGs 324 (965)
..+|++++||.+|. ..+| .+|.+.+++.++++... .+....+..+....+++.+.+..+. +. +++++++||+
T Consensus 33 ~~~g~~~idl~~g~--~~~~-~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~~~g~~~~~~~~v~~t~g~~ 109 (412)
T 2x5d_A 33 RRRGEDIIDLSMGN--PDGP-TPPHIVEKLCTVAQREDTHGYSTSRGIPRLRRAISHWYRDRYDVQIDPESEAIVTIGSK 109 (412)
T ss_dssp HHTTCCCEECSSCC--CCSC-CCHHHHHHHHHTC---------CTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESCHH
T ss_pred hhcCCCEEecCCCC--CCCC-CCHHHHHHHHHHHhCCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCcCEEEcCChH
Confidence 36799999999886 3567 78999999998876531 1221223445556666666554453 45 6999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHH
Q psy8199 325 SAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIA 404 (965)
Q Consensus 325 eA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (965)
+|++.+++.+. .++++|++.+++||++...+...+. .+..+|.....+ +
T Consensus 110 ~a~~~~~~~~~--------~~gd~Vl~~~p~~~~~~~~~~~~g~-------------~~~~~~~~~~~~---------~- 158 (412)
T 2x5d_A 110 EGLAHLMLATL--------DHGDTILVPNPSYPIHIYGAVIAGA-------------QVRSVPLVPGID---------F- 158 (412)
T ss_dssp HHHHHHHHHHC--------CTTCEEEEEESCCHHHHHHHHHHTC-------------EEEEEECSTTSC---------H-
T ss_pred HHHHHHHHHhC--------CCCCEEEEcCCCchhHHHHHHHcCC-------------EEEEeecCCccC---------C-
Confidence 99999999763 2458899999999998544332221 233344321100 1
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccc-ccccccc---
Q psy8199 405 RCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK-FFACEHA--- 480 (965)
Q Consensus 405 ~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~-~~~~~~~--- 480 (965)
..|+++|++++. +++++|++.. ++|++|.+. +.+++++|.++|++||+++|+||+|+++.+.|. ......+
T Consensus 159 ~~d~~~l~~~i~---~~~~~v~l~~-p~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~ 233 (412)
T 2x5d_A 159 FNELERAIRESI---PKPRMMILGF-PSNPTAQCV-ELDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQVPGA 233 (412)
T ss_dssp HHHHHHHHHTEE---SCCSEEEEES-SCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTG
T ss_pred CCCHHHHHHhcc---cCceEEEECC-CCCCCCCcC-CHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCChhhccCc
Confidence 147888888775 2344444533 488888765 788999999999999999999999999876664 2222222
Q ss_pred -CCCcceeeeccccC-CCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc--ccHHHHHHH
Q psy8199 481 -EIWPDFLCLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK--DNILQRISQ 556 (965)
Q Consensus 481 -~~~pDivt~sK~l~-gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~--~~~~~~~~~ 556 (965)
+....+.++||.++ +| +++|++++++++++.+.. ..+..+++.|+++++++.++|+...+ +...+++++
T Consensus 234 ~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~l~~------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~ 306 (412)
T 2x5d_A 234 KDIAVEFFTLSKSYNMAG-WRIGFMVGNPELVSALAR------IKSYHDYGTFTPLQVAAIAALEGDQQCVRDIARQYQQ 306 (412)
T ss_dssp GGTEEEEEECC-CCSCTT-SCCEEEEECHHHHHHHHH------HHHHHCCCCCHHHHHHHHHHHHSCSHHHHHHHHHHHH
T ss_pred cCcEEEEecCccccCCcc-cceEEEEcCHHHHHHHHH------HHhhhccCCCHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 22233457999997 56 799999999999888765 23445788999999999999974321 345667777
Q ss_pred HHHHHHHHHHcccCCCceeeeece-eEEEEEEEeecCccchhhHHHHHHHHHHH-cCcEEeec-------CCEEEEeCCc
Q psy8199 557 DMKKITKALTSLITHPKIINFRQK-GMIWAFDVIIEDPEQIETFSKKFFVAALK-NELLLRPI-------GNTVYLMPPY 627 (965)
Q Consensus 557 ~~~~l~~~L~~l~~~~~i~~v~g~-G~~~~i~~~~~~~~~~~~~~~~~~~~l~~-~Gi~~~~~-------~~~lR~~p~~ 627 (965)
+.+++.+.|+++ ++..+++. |.++++.+. +... ......+.+.|.+ +||++.++ .+++|++++.
T Consensus 307 ~~~~l~~~L~~~----g~~~~~~~~g~~~~~~~~--~~~~-~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~ 379 (412)
T 2x5d_A 307 RRDVLVKGLREA----GWMVENPKASMYVWAKIP--EPYA-HLGSLEFAKKLLQDAKVSVSPGIGFGDYGDDHVRFALIE 379 (412)
T ss_dssp HHHHHHHHHHHH----TCCCCCCSBSSEEEEECC--TTTG-GGCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCS
T ss_pred HHHHHHHHHHHC----CCEecCCCeeeEEEEEcC--CccC-CCCHHHHHHHHHHHCCEEEeCchhhCCCCCCeEEEEecC
Confidence 888888888765 33334555 556666663 1100 0013467777764 79999874 3699999875
Q ss_pred ccCHHHHHHHHHhhhccc
Q psy8199 628 ILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 628 ~~t~~~i~~~~~~l~~~~ 645 (965)
++++++++++++.+.+
T Consensus 380 --~~~~l~~~l~~l~~~l 395 (412)
T 2x5d_A 380 --NRDRLRQAVRGIKAMF 395 (412)
T ss_dssp --CHHHHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHHHH
Confidence 8899999998887554
|
| >1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=3.5e-26 Score=262.52 Aligned_cols=345 Identities=12% Similarity=0.063 Sum_probs=240.3
Q ss_pred CCcccccccccchhccCCCCCHHHHHHHHHHHhhc----cccccCCCCcHHHHHHHHHHHhhcC---CCCCeEEEcCChh
Q psy8199 252 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKL----EHVMLSNLTHKPVIKLSEKLSSLTQ---YKLGHCFYGSDGA 324 (965)
Q Consensus 252 dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~----~~~~~~~~~~~~~~~la~~l~~~~~---~~~~~v~~~~sGs 324 (965)
.++.+|||.+|.+. ..||.+|++.+|+.++++.. ..+....+..+....+++.+.+.++ .+.+++++++||+
T Consensus 41 ~~~~~idl~~g~~~-~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~~v~~t~G~~ 119 (425)
T 1vp4_A 41 ADKDAISFGGGVPD-PETFPRKELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQ 119 (425)
T ss_dssp TSTTCEECCCCSCC-GGGSCHHHHHHHHHHHHHHSHHHHTSCCCTTCCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHH
T ss_pred cCCCceeCCCCCCC-cccCCHHHHHHHHHHHHhhcchhhcCCCCCCCCHHHHHHHHHHHHhccCCCCCCcccEEEeccHH
Confidence 36789999988753 45889999999999998753 2222222345666677777765545 4567999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHH
Q psy8199 325 SAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIA 404 (965)
Q Consensus 325 eA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (965)
+|++.+++.+.. ++++|++.+++||++.......+. .+..+|.... +
T Consensus 120 ~al~~~~~~l~~--------~gd~Vl~~~p~y~~~~~~~~~~g~-------------~~~~v~~~~~-~----------- 166 (425)
T 1vp4_A 120 QALDLIGKLFLD--------DESYCVLDDPAYLGAINAFRQYLA-------------NFVVVPLEDD-G----------- 166 (425)
T ss_dssp HHHHHHHHHHCC--------TTCEEEEEESCCHHHHHHHHTTTC-------------EEEEEEEETT-E-----------
T ss_pred HHHHHHHHHhCC--------CCCEEEEeCCCcHHHHHHHHHcCC-------------EEEEeccCCC-C-----------
Confidence 999999997632 458899999999998554433221 1223332110 0
Q ss_pred HHHHHHHHHHHHhC-----CCcEEEEE-EccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccccc-ccc
Q psy8199 405 RCAIFDLEILLKKN-----HNKIAAII-IEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKF-FAC 477 (965)
Q Consensus 405 ~~d~~~le~~l~~~-----~~~~aaii-~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~-~~~ 477 (965)
.|+++|++++++. +.++++|+ +.. ++|++|.+. +.+++++|.++|++||+++|+||+|++|.+.|.. ...
T Consensus 167 -~d~~~l~~~l~~~~~~~~~~~~~~v~~~~~-~~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~ 243 (425)
T 1vp4_A 167 -MDLNVLERKLSEFDKNGKIKQVKFIYVVSN-FHNPAGVTT-SLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPI 243 (425)
T ss_dssp -ECHHHHHHHHHHHHHTTCGGGEEEEEEECS-SCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCH
T ss_pred -CCHHHHHHHHHhhhhcccCCCceEEEECCC-CCCCCCCcC-CHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCH
Confidence 2678888888641 12567764 444 688888765 7889999999999999999999999988766642 223
Q ss_pred cccCCCcc---eeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHH--h--cccH
Q psy8199 478 EHAEIWPD---FLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIF--N--KDNI 550 (965)
Q Consensus 478 ~~~~~~pD---ivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~--~--~~~~ 550 (965)
..++..++ +.+|||.++.| +|+|++++++++++.+.. .....+++.|+++++++.++|+.. . -+..
T Consensus 244 ~~~~~~~~~i~~~s~sK~~~~G-~r~G~~~~~~~~~~~l~~------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~ 316 (425)
T 1vp4_A 244 FKIGGPERVVLLNTFSKVLAPG-LRIGMVAGSKEFIRKIVQ------AKQSADLCSPAITHRLAARYLERYDLLEQLKPT 316 (425)
T ss_dssp HHHHCTTTEEEEEESTTTTCGG-GCEEEEECCHHHHHHHHH------HHHHHHSSCCHHHHHHHHHHHHHSCHHHHTHHH
T ss_pred HHhCCCCCEEEEeccccccccc-cceEEEeeCHHHHHHHHH------HhhhhcCCCCHHHHHHHHHHHhcCCHHHHHHHH
Confidence 22222222 44789999966 899999999999888764 233455677999999999999763 1 1234
Q ss_pred HHHHHHHHHHHHHHHHcc-cCCCceeee-eceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec---------CC
Q psy8199 551 LQRISQDMKKITKALTSL-ITHPKIINF-RQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI---------GN 619 (965)
Q Consensus 551 ~~~~~~~~~~l~~~L~~l-~~~~~i~~v-~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~---------~~ 619 (965)
.++++++.+++.+.|++. ...+++..+ +..|+++++.+. ++.. ...+.+.|.++||++.|+ .+
T Consensus 317 ~~~~~~~~~~l~~~L~~~~~~~~g~~~~~~~~g~~~~~~~~--~~~~----~~~l~~~l~~~gi~v~~g~~f~~~~~~~~ 390 (425)
T 1vp4_A 317 IELYRRKRTVMLNALEEYFSDIPGVKWVKSEGGLFIWLTLP--EGFD----TWEMFEYAKRKKVFYVPGRVFKVYDEPSP 390 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSTTCEECCCSBSSEEEEECC--TTCC----TTTTHHHHHHHTEECEEGGGGCTTCCCCS
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCceEEecCCccEEEEEEcC--CCCC----HHHHHHHHHHCCCEEECchhhcCCCCCCC
Confidence 566677778888888764 222245443 345777777764 1111 224667788889999873 36
Q ss_pred EEEEeCCcccCHHHHHHHHHhhhccccc
Q psy8199 620 TVYLMPPYILNKNEIQHMTSAIFQTFNE 647 (965)
Q Consensus 620 ~lR~~p~~~~t~~~i~~~~~~l~~~~~~ 647 (965)
++||+++.. ++++++++++++.+.+..
T Consensus 391 ~iRis~~~~-~~e~i~~~l~~l~~~l~~ 417 (425)
T 1vp4_A 391 SMRLSFCLP-PDEKIVEGIKRLREVVLE 417 (425)
T ss_dssp EEEEECSSS-CHHHHHHHHHHHHHHHHH
T ss_pred eEEEEeCCC-CHHHHHHHHHHHHHHHHH
Confidence 899998764 899999999998876543
|
| >2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-25 Score=257.00 Aligned_cols=341 Identities=16% Similarity=0.088 Sum_probs=238.9
Q ss_pred CCcccccccccchhccCCCCCHHHHHHHHHHHhhccc---cccCCCCcHHHHHHHHHHHhhcC--CCCCeEEEcCChhHH
Q psy8199 252 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEH---VMLSNLTHKPVIKLSEKLSSLTQ--YKLGHCFYGSDGASA 326 (965)
Q Consensus 252 dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~---~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~~~sGseA 326 (965)
.|+.+|||.+|.+. ..||.+|++.+|+.++++.... +....+..+....+++.+.+..+ ...+++++++||++|
T Consensus 32 ~g~~~idl~~g~~~-~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~t~g~t~a 110 (407)
T 2zc0_A 32 KGVKLISLAAGDPD-PELIPRAVLGEIAKEVLEKEPKSVMYTPANGIPELREELAAFLKKYDHLEVSPENIVITIGGTGA 110 (407)
T ss_dssp SSCCCEECCSCCCC-TTTSCHHHHHHHHHHHHHHCGGGGSCCCTTCCHHHHHHHHHHHHHHSCCCCCGGGEEEESHHHHH
T ss_pred CCCceEeCCCCCCC-chhCCHHHHHHHHHHHHhhccccccCCCCCCCHHHHHHHHHHHHHhcCCCCCcceEEEecCHHHH
Confidence 47899999888653 4588999999999999876421 22122334555666666655445 346799999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHH
Q psy8199 327 VEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARC 406 (965)
Q Consensus 327 ~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (965)
++.+++.+.. ++++|++.+++||++.......+. .+..+|.... + .
T Consensus 111 ~~~~~~~~~~--------~gd~vl~~~p~~~~~~~~~~~~g~-------------~~~~v~~~~~-~------------~ 156 (407)
T 2zc0_A 111 LDLLGRVLID--------PGDVVITENPSYINTLLAFEQLGA-------------KIEGVPVDND-G------------M 156 (407)
T ss_dssp HHHHHHHHCC--------TTCEEEEEESCCHHHHHHHHTTTC-------------EEEEEEEETT-E------------E
T ss_pred HHHHHHHhcC--------CCCEEEEeCCChHHHHHHHHHcCC-------------EEEEcccCCC-C------------C
Confidence 9999998742 468899999999997543322211 2233332110 0 2
Q ss_pred HHHHHHHHHHh---CCCcEEEEE-EccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccccc-ccccccC
Q psy8199 407 AIFDLEILLKK---NHNKIAAII-IEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKF-FACEHAE 481 (965)
Q Consensus 407 d~~~le~~l~~---~~~~~aaii-~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~-~~~~~~~ 481 (965)
|+++|++++++ ...++++|+ ++. ++|++|.+. +.+++++|.++|++||+++|+||+|+++.+.|.. .....++
T Consensus 157 d~~~l~~~l~~~~~~~~~~~~v~~~~~-~~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~ 234 (407)
T 2zc0_A 157 RVDLLEEKIKELKAKGQKVKLIYTIPT-GQNPMGVTM-SMERRKALLEIASKYDLLIIEDTAYNFMRYEGGDIVPLKALD 234 (407)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEEECCS-SCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTSBSSCSSCCCGGGGC
T ss_pred CHHHHHHHHHhhhcccCCceEEEECCC-CCCCCCcCC-CHHHHHHHHHHHHHcCCEEEEECCCcccccCCCCCCChhhcC
Confidence 67888888862 123567764 444 688899865 7889999999999999999999999988666642 2233333
Q ss_pred C---CcceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHH--h---cccHHHH
Q psy8199 482 I---WPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIF--N---KDNILQR 553 (965)
Q Consensus 482 ~---~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~--~---~~~~~~~ 553 (965)
. ..++.+|||.++.| +++|++++++++++.+.. ..+..+++.++++++++.++|+.. . -+...++
T Consensus 235 ~~~~~i~~~s~sK~~~~G-~r~G~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 307 (407)
T 2zc0_A 235 NEGRVIVAGTLSKVLGTG-FRIGWIIAEGEILKKVLM------QKQPIDFCAPAISQYIALEYLKRGYFEKYHLEGALLG 307 (407)
T ss_dssp SSCCEEEEEESTTTTCTT-SCCEEEECCHHHHHHHHH------HHTTTTSSSCHHHHHHHHHHHHTTHHHHHTTTTHHHH
T ss_pred CCCCEEEEcccccccCCC-cceEEEecCHHHHHHHHH------HHHhhcCCCCHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 2 23455799999966 799999999999888765 234566778999999999999753 1 2345677
Q ss_pred HHHHHHHHHHHHHcccCCCceeee-eceeEEEEEEEeecCccchhhHHHHHHHHHHHc-CcEEeec---------CCEEE
Q psy8199 554 ISQDMKKITKALTSLITHPKIINF-RQKGMIWAFDVIIEDPEQIETFSKKFFVAALKN-ELLLRPI---------GNTVY 622 (965)
Q Consensus 554 ~~~~~~~l~~~L~~l~~~~~i~~v-~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~-Gi~~~~~---------~~~lR 622 (965)
++++.+++.+.|++. .+++..+ +..|+++.+.+. ++. ....+.+.|.++ ||++.++ .+++|
T Consensus 308 ~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~~~~~~--~~~----~~~~l~~~l~~~~gi~v~~g~~~~~~~~~~~~iR 379 (407)
T 2zc0_A 308 YKEKRDIMLKALENH--LPNAEFTKPIAGMFVMFFLP--EGA----DGISFANELMEREGVVVVPGKPFYTDESGKNAIR 379 (407)
T ss_dssp HHHHHHHHHHHHHHH--CTTSCBCCCSBSSEEEEECS--TTC----CHHHHHHHHHHHTCEECBCSGGGCSSSCCTTEEE
T ss_pred HHHHHHHHHHHHHHh--CCCCEEecCCCcEEEEEEcC--CCC----CHHHHHHHHHHhCCeEEECchhccCCCCCCCeEE
Confidence 777888888888653 1333322 345667777764 111 134677888888 9999863 36899
Q ss_pred EeCCcccCHHHHHHHHHhhhccc
Q psy8199 623 LMPPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 623 ~~p~~~~t~~~i~~~~~~l~~~~ 645 (965)
++++.. ++++++++++++.+.+
T Consensus 380 is~~~~-~~~~i~~~~~~l~~~l 401 (407)
T 2zc0_A 380 LNFSRP-SKEEIPIGIKKLAKLY 401 (407)
T ss_dssp EECSSS-CTTHHHHHHHHHHHHH
T ss_pred EEeCCC-CHHHHHHHHHHHHHHH
Confidence 998876 8899999999887654
|
| >3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.94 E-value=2.2e-25 Score=250.11 Aligned_cols=320 Identities=15% Similarity=0.161 Sum_probs=224.9
Q ss_pred cCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHH
Q psy8199 251 FSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVA 330 (965)
Q Consensus 251 ~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~A 330 (965)
.+|+++|||.+|. ++++ .+|++.+|+.++++.... ++++...++.++++++++.+.+++++++||++|++.+
T Consensus 23 ~~~~~~idl~~~~--~~~~-~~~~v~~a~~~~~~~~~~-----y~~~~~~~l~~~la~~~~~~~~~i~~~~g~t~al~~~ 94 (361)
T 3ftb_A 23 FKGRELLDYSSNI--NPLG-IPKSFLNNIDEGIKNLGV-----YPDVNYRRLNKSIENYLKLKDIGIVLGNGASEIIELS 94 (361)
T ss_dssp -----CEETTCCC--CTTC-SCHHHHTTHHHHHHGGGS-----CCCTTCHHHHHHHHHHHTCCSCEEEEESSHHHHHHHH
T ss_pred cCCCCEEEecCCC--CCCC-CCHHHHHHHHHHHHHhcC-----CCCccHHHHHHHHHHHhCCCcceEEEcCCHHHHHHHH
Confidence 5899999999885 3565 589999999999887433 2344457888888888877778999999999999999
Q ss_pred HHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHH
Q psy8199 331 LKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFD 410 (965)
Q Consensus 331 l~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 410 (965)
++.+ ++|++.+++||++.......+. .+..+|...... .++++
T Consensus 95 ~~~~------------d~vi~~~~~~~~~~~~~~~~g~-------------~~~~~~~~~~~~------------~~~~~ 137 (361)
T 3ftb_A 95 ISLF------------EKILIIVPSYAEYEINAKKHGV-------------SVVFSYLDENMC------------IDYED 137 (361)
T ss_dssp HTTC------------SEEEEEESCCTHHHHHHHHTTC-------------EEEEEECCTTSC------------CCHHH
T ss_pred HHHc------------CcEEEecCChHHHHHHHHHcCC-------------eEEEeecCcccC------------CCHHH
Confidence 8754 6799999999997544433322 233444332111 14578
Q ss_pred HHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCccee---
Q psy8199 411 LEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL--- 487 (965)
Q Consensus 411 le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDiv--- 487 (965)
|++++++ ..++++++| +|++|.+. +.+.+++|.++|++||+++|+||+|++|++.+........+..++++
T Consensus 138 l~~~l~~---~~~v~i~~p--~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~ 211 (361)
T 3ftb_A 138 IISKIDD---VDSVIIGNP--NNPNGGLI-NKEKFIHVLKLAEEKKKTIIIDEAFIEFTGDPSSSFVGEIKNYSCLFIIR 211 (361)
T ss_dssp HHHHTTT---CSEEEEETT--BTTTTBCC-CHHHHHHHHHHHHHHTCEEEEECSSGGGTCCTTSSSGGGTTTCSSEEEEE
T ss_pred HHHhccC---CCEEEEeCC--CCCCCCCC-CHHHHHHHHHHhhhcCCEEEEECcchhhcCCcccchhHhcccCCCEEEEe
Confidence 8888863 334444555 88888766 67779999999999999999999999887642223333334444544
Q ss_pred eeccccC-CCcccceeee-ecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHH
Q psy8199 488 CLSKGIT-GGYLPLSLVM-TTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN-KDNILQRISQDMKKITKA 564 (965)
Q Consensus 488 t~sK~l~-gG~~pig~v~-~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~-~~~~~~~~~~~~~~l~~~ 564 (965)
++||.++ +| +++|+++ +++++++.+.. ...+++.|+++++++.++|+..+ -+...++++++.+++.+.
T Consensus 212 s~sK~~~~~G-~r~g~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~ 282 (361)
T 3ftb_A 212 AMTKFFAMPG-IRFGYGITNNKEIAAKIKA--------KQNPWNINCFAEMAAINCLKDTNYIEESLLWIKKERKRFIEE 282 (361)
T ss_dssp ESSSTTSCGG-GCCEEEEESCHHHHHHHHT--------TSCTTCSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred eChhhcCCCC-cceeEEEeCCHHHHHHHHh--------hCCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 6899987 45 8999988 89999988865 23467889999999999986211 022344455555566665
Q ss_pred HHcccCCCcee-eeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec-------CCEEEEeCCcccCHHHHHH
Q psy8199 565 LTSLITHPKII-NFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-------GNTVYLMPPYILNKNEIQH 636 (965)
Q Consensus 565 L~~l~~~~~i~-~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-------~~~lR~~p~~~~t~~~i~~ 636 (965)
|++ .|++. ..++.|.++.+.+. . .....+.+.|.++||++.++ .+++|++++ +.+++++
T Consensus 283 l~~---~~~~~~~~~~~~~~~~~~~~-~------~~~~~l~~~l~~~gi~v~~g~~~~~~~~~~iRis~~---~~~~~~~ 349 (361)
T 3ftb_A 283 LNK---IGFIKRVFSPHANFVLCRLE-N------ISGEKLYDSLLKEDIVIRRCCNFIGLDDSFVRFAIK---DEKKNTK 349 (361)
T ss_dssp HHH---SSSEEEEECCSSSEEEEEES-S------SCHHHHHHHHHTTTEECEECTTSTTCCTTEEEEECC---CHHHHHH
T ss_pred HHh---CCCCceecCCCCeEEEEEcC-C------CCHHHHHHHHHHCCeEEeeCccCCCCCCCEEEEEcC---CHHHHHH
Confidence 544 46777 77888999888775 1 11446788899999999874 368999954 7777777
Q ss_pred HHHhhhc
Q psy8199 637 MTSAIFQ 643 (965)
Q Consensus 637 ~~~~l~~ 643 (965)
+.+.+..
T Consensus 350 l~~~l~~ 356 (361)
T 3ftb_A 350 FLRALKG 356 (361)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776654
|
| >3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica} | Back alignment and structure |
|---|
Probab=99.94 E-value=9.8e-26 Score=252.30 Aligned_cols=331 Identities=13% Similarity=0.064 Sum_probs=240.5
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhH
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGAS 325 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGse 325 (965)
.++++.+|+.++||.++. ++++ .+|++.+|+.++++.. ..++.+...++.++++++++...+++++++||++
T Consensus 8 ~~~~~~~~~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~-----~~y~~~~~~~l~~~la~~~~~~~~~i~~~~g~~~ 79 (354)
T 3ly1_A 8 AAFTAPSTDNPIRINFNE--NPLG-MSPKAQAAARDAVVKA-----NRYAKNEILMLGNKLAAHHQVEAPSILLTAGSSE 79 (354)
T ss_dssp -CCCCCCSSSCEECSSCC--CSSC-CCHHHHHHHHHTGGGT-----TSCCHHHHHHHHHHHHHHTTSCGGGEEEESHHHH
T ss_pred ccccCCCCCceEEccCCC--CCCC-CCHHHHHHHHHHHhhC-----cCCCCCchHHHHHHHHHHhCCChHHEEEeCChHH
Confidence 456889999999999874 5565 7899999999988753 3445667789999999999766789999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHH
Q psy8199 326 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIAR 405 (965)
Q Consensus 326 A~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (965)
|++.+++.+.. ++++|++.+++|+++.......+. .+..+|..... .
T Consensus 80 a~~~~~~~l~~--------~gd~vl~~~~~~~~~~~~~~~~g~-------------~~~~~~~~~~~-~----------- 126 (354)
T 3ly1_A 80 GIRAAIEAYAS--------LEAQLVIPELTYGDGEHFAKIAGM-------------KVTKVKMLDNW-A----------- 126 (354)
T ss_dssp HHHHHHHHHCC--------TTCEEEEESSSCTHHHHHHHHTTC-------------EEEEECCCTTS-C-----------
T ss_pred HHHHHHHHHhC--------CCCeEEECCCCchHHHHHHHHcCC-------------EEEEecCCCCC-C-----------
Confidence 99999997632 568899999999987543333221 23444443211 1
Q ss_pred HHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccccccc-cc---cc-
Q psy8199 406 CAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFA-CE---HA- 480 (965)
Q Consensus 406 ~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~-~~---~~- 480 (965)
.|+++|+++++++ +++.+|+++. ++|++|.+. +.+.+++|.++| +||+++|+||+|++|++.+.... .. ..
T Consensus 127 ~d~~~l~~~l~~~-~~~~~v~l~~-p~nptG~~~-~~~~l~~l~~~~-~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~ 202 (354)
T 3ly1_A 127 FDIEGLKAAVAAY-SGPSIVYLVN-PNNPTGTIT-PADVIEPWIASK-PANTMFIVDEAYAEFVNDPRFRSISPMITQGA 202 (354)
T ss_dssp CCHHHHHHHHHTC-SSCEEEEEES-SCTTTCCCC-CHHHHHHHHHTC-CTTEEEEEECTTGGGCCCTTCCCSHHHHHTTC
T ss_pred CCHHHHHHHhccC-CCCCEEEEeC-CCCCcCCCc-CHHHHHHHHHhC-CCCeEEEEeccHHHhccccccCCHHHHhhhcC
Confidence 2688999998742 3456666666 689999876 566688888888 79999999999998876654211 11 11
Q ss_pred CCCcceeeeccccC-CCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh-cccHHHHHHHHH
Q psy8199 481 EIWPDFLCLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN-KDNILQRISQDM 558 (965)
Q Consensus 481 ~~~pDivt~sK~l~-gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~-~~~~~~~~~~~~ 558 (965)
+....+.++||.++ .| +++|++++++++++.+.. ....++.|+++++++.++|+... -+...++++++.
T Consensus 203 ~~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~~~~--------~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~ 273 (354)
T 3ly1_A 203 ENIILLKTFSKIHAMAG-MRVGYAVAHPTVIALMGR--------YVAGEKINFSGVDAALASMNDSAFITYSKKSNDVSR 273 (354)
T ss_dssp SSEEEEEESSSTTCCGG-GCCEEEECCHHHHHHHGG--------GTTCSCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEeeChhhccChh-hhheeeecCHHHHHHHHH--------hcCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 32233447899997 55 899999999999988875 12336889999999999986331 123456667777
Q ss_pred HHHHHHHHcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEe----ecCCEEEEeCCcccCHHHH
Q psy8199 559 KKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLR----PIGNTVYLMPPYILNKNEI 634 (965)
Q Consensus 559 ~~l~~~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~----~~~~~lR~~p~~~~t~~~i 634 (965)
+++.+.|+++ ++..+++.|.++++.+. . ....+.+.|.++||++. ...+++|++. .+++++
T Consensus 274 ~~l~~~l~~~----~~~~~~~~~~~~~~~~~-~-------~~~~~~~~l~~~gi~v~g~~~~~~~~iRis~---~~~~~i 338 (354)
T 3ly1_A 274 QILLKALEDL----KLPYLPSEGNFVFHQLV-V-------PLKDYQTHMADAGVLIGRAFPPADNWCRISL---GTPQEM 338 (354)
T ss_dssp HHHHHHHHHH----TCCBCCCCSSEEEEECS-S-------CHHHHHHHHHHTTEECCCCCTTCTTEEEEEC---CCHHHH
T ss_pred HHHHHHHHHC----CCeECCCCceEEEEECC-C-------CHHHHHHHHHHCCEEEeecCCCCCCEEEEEc---CCHHHH
Confidence 7777777665 34455678888877764 1 14467788999999987 1237999994 388999
Q ss_pred HHHHHhhhccc
Q psy8199 635 QHMTSAIFQTF 645 (965)
Q Consensus 635 ~~~~~~l~~~~ 645 (965)
+++++++.+.+
T Consensus 339 ~~~~~~l~~~l 349 (354)
T 3ly1_A 339 QWVADTMREFR 349 (354)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998887643
|
| >3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.94 E-value=2.2e-25 Score=250.77 Aligned_cols=326 Identities=12% Similarity=0.086 Sum_probs=237.5
Q ss_pred CcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCC-CCCeEEEcCChhHHHHHHH
Q psy8199 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQY-KLGHCFYGSDGASAVEVAL 331 (965)
Q Consensus 253 G~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~-~~~~v~~~~sGseA~~~Al 331 (965)
.+.+|||.++. ++++ .+|+|.+|+.+++..... ..++.+...++.++++++++. ..+++++++||++|++.++
T Consensus 29 ~~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~---~~y~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~ 102 (367)
T 3euc_A 29 SHGLVKLDAME--NPYR-LPPALRSELAARLGEVAL---NRYPVPSSEALRAKLKEVMQVPAGMEVLLGNGSDEIISMLA 102 (367)
T ss_dssp CTTCEECCSSC--CCCC-CCHHHHHHHHHHHHHHHT---TCSCCCCHHHHHHHHHHHHTCCTTCEEEEEEHHHHHHHHHH
T ss_pred CCCeeEccCCC--CCCC-CCHHHHHHHHHHhhhhhh---hcCCCCcHHHHHHHHHHHhCCCCcceEEEcCCHHHHHHHHH
Confidence 46899998874 4555 789999999999875311 233444567889999998875 5679999999999999999
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHH
Q psy8199 332 KMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDL 411 (965)
Q Consensus 332 ~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l 411 (965)
+.+.. ++++|++.+++|+++.......+. .+..+|...... .|+++|
T Consensus 103 ~~~~~--------~gd~Vl~~~~~~~~~~~~~~~~g~-------------~~~~v~~~~~~~------------~d~~~l 149 (367)
T 3euc_A 103 LAAAR--------PGAKVMAPVPGFVMYAMSAQFAGL-------------EFVGVPLRADFT------------LDRGAM 149 (367)
T ss_dssp HHTCC--------TTCEEEEEESCSCCSCHHHHTTTC-------------EEEEEECCTTSC------------CCHHHH
T ss_pred HHHcC--------CCCEEEEcCCCHHHHHHHHHHcCC-------------eEEEecCCCCCC------------CCHHHH
Confidence 87632 568899999999998544333222 234444432111 368899
Q ss_pred HHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhc--CCeEEEeccccCCCcccccccccccCCCcceeee
Q psy8199 412 EILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNY--NIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCL 489 (965)
Q Consensus 412 e~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~--g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~ 489 (965)
++++.++ ++++|+++. ++|++|.+. +.+.+++|.++|++| |+++|+||+|++|+..+........+...++.+|
T Consensus 150 ~~~l~~~--~~~~v~~~~-~~nptG~~~-~~~~l~~i~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~ 225 (367)
T 3euc_A 150 LAAMAEH--QPAIVYLAY-PNNPTGNLF-DAADMEAIVRAAQGSVCRSLVVVDEAYQPFAQESWMSRLTDFGNLLVMRTV 225 (367)
T ss_dssp HHHHHHH--CCSEEEEES-SCTTTCCCC-CHHHHHHHHHHTBTTSCBCEEEEECTTCCSSSCCSGGGGGTCTTEEEEEEC
T ss_pred HHHhhcc--CCCEEEEcC-CCCCCCCCC-CHHHHHHHHHhhhhcCCCcEEEEeCcchhhcccchHHHHhhCCCEEEEecc
Confidence 9988752 345566666 689999876 677799999999999 9999999999988654443344444444566689
Q ss_pred ccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHcc
Q psy8199 490 SKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK-DNILQRISQDMKKITKALTSL 568 (965)
Q Consensus 490 sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~-~~~~~~~~~~~~~l~~~L~~l 568 (965)
||...+| +++|++++++++++.+.. ...+++.|+++++++.++|+..+. +...++++++.+++.+.|++
T Consensus 226 sK~~~~G-~r~G~~~~~~~~~~~~~~--------~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~- 295 (367)
T 3euc_A 226 SKLGLAG-IRLGYVAGDPQWLEQLDK--------VRPPYNVNVLTEATALFALEHVAVLDEQAAQLRAERSRVAEGMAA- 295 (367)
T ss_dssp CCTTSCS-CCEEEEEECHHHHHHHGG--------GCCSSCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred hhhcccc-cCceeeeeCHHHHHHHHH--------hCCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 9983345 799999999999988865 234677899999999999975211 23455666666667666655
Q ss_pred cCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec-------CCEEEEeCCcccCHHHHHHHHHhh
Q psy8199 569 ITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-------GNTVYLMPPYILNKNEIQHMTSAI 641 (965)
Q Consensus 569 ~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-------~~~lR~~p~~~~t~~~i~~~~~~l 641 (965)
.|++...++.|.++.+.+. + ...+.+.|.++||++.++ .+++|++.+ ++++++++++++
T Consensus 296 --~~g~~~~~~~~~~~~~~~~--~-------~~~l~~~l~~~gi~v~~~~~~~~~~~~~iRis~~---~~~~i~~~~~~l 361 (367)
T 3euc_A 296 --HGGVTVFPSAANFLLARVP--D-------AAQTFDRLLARKVLIKNVSKMHPLLANCLRVTVS---TPEENAQFLEAF 361 (367)
T ss_dssp --STTCEECCCSSSEEEEECS--C-------HHHHHHHHHTTTEECEECGGGCGGGTTEEEEECC---CHHHHHHHHHHH
T ss_pred --CCCcEECCCCCeEEEEECC--C-------HHHHHHHHHHCCeEEEECCccCCCCCCEEEEecC---CHHHHHHHHHHH
Confidence 3566666777888777653 1 346778899999999874 268999943 899999999988
Q ss_pred hccc
Q psy8199 642 FQTF 645 (965)
Q Consensus 642 ~~~~ 645 (965)
.+.+
T Consensus 362 ~~~l 365 (367)
T 3euc_A 362 AASL 365 (367)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 7643
|
| >2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.94 E-value=9.3e-26 Score=257.09 Aligned_cols=338 Identities=8% Similarity=0.012 Sum_probs=233.5
Q ss_pred cCCcccccccccchhccCCCCCHHHHHHHHHHHhhc--cccccCCCCcHHHHHHHHHHHhhcCCC--C-CeEEEcCChhH
Q psy8199 251 FSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKL--EHVMLSNLTHKPVIKLSEKLSSLTQYK--L-GHCFYGSDGAS 325 (965)
Q Consensus 251 ~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~--~~~~~~~~~~~~~~~la~~l~~~~~~~--~-~~v~~~~sGse 325 (965)
..|++++||.+|.+ .+| .+|.+.+|+.++++.. ..+....+..+....+++.+.+..+.. . ++|++++||++
T Consensus 44 ~~g~~~idl~~g~~--~~~-~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~v~~t~G~~~ 120 (404)
T 2o1b_A 44 HGPLPLINMAVGIP--DGP-TPQGIIDHFQKALTIPENQKYGAFHGKEAFKQAIVDFYQRQYNVTLDKEDEVCILYGTKN 120 (404)
T ss_dssp CCSSCCEECCCCSC--SSC-CCHHHHHHHHHHTTCHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSHHH
T ss_pred cCCCCEEecCCcCC--CCC-CCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCcccEEEcCCcHH
Confidence 45889999998865 577 5899999999988542 122222234555666666666655643 2 68999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHH
Q psy8199 326 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIAR 405 (965)
Q Consensus 326 A~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (965)
|++.+++.+.. ++++|++.+++||++...+...+. .+..+|.......
T Consensus 121 al~~~~~~l~~--------~gd~Vl~~~p~y~~~~~~~~~~g~-------------~~~~v~~~~~~~~----------- 168 (404)
T 2o1b_A 121 GLVAVPTCVIN--------PGDYVLLPDPGYTDYLAGVLLADG-------------KPVPLNLEPPHYL----------- 168 (404)
T ss_dssp HHHHHHHHHCC--------TTCEEEEEESCCSSHHHHHHHTTC-------------EEEEEECCTTTCC-----------
T ss_pred HHHHHHHHhcC--------CCCEEEEcCCCchhHHHHHHHCCC-------------EEEEeccCcccCc-----------
Confidence 99999997732 458899999999998654433221 2333443211000
Q ss_pred HHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccccccccccc----C
Q psy8199 406 CAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHA----E 481 (965)
Q Consensus 406 ~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~----~ 481 (965)
.|+++|++++. .++++|+++. ++|++|.+. +.+++++|.++|++||+++|+||+|++|.+.|.......+ +
T Consensus 169 ~d~~~l~~~l~---~~~~~v~l~~-p~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~ 243 (404)
T 2o1b_A 169 PDWSKVDSQII---DKTKLIYLTY-PNNPTGSTA-TKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDAKNPSILASENGKD 243 (404)
T ss_dssp CCGGGSCHHHH---HHEEEEEECS-SCTTTCCCC-CHHHHHHHHHHHTTSSCEEEEECTTTTCBSSSCCCCGGGSTTHHH
T ss_pred CCHHHHHHhhc---cCceEEEEcC-CCCCCCccC-CHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCC
Confidence 24677777775 2467777775 688899765 7889999999999999999999999988665532221111 2
Q ss_pred CCcceeeeccccC-CCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc--ccHHHHHHHHH
Q psy8199 482 IWPDFLCLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK--DNILQRISQDM 558 (965)
Q Consensus 482 ~~pDivt~sK~l~-gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~--~~~~~~~~~~~ 558 (965)
....+.++||.++ .| +++|++++++++++.+.. .....+++.++++++++.++|+...+ +...++++++.
T Consensus 244 ~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~l~~------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~ 316 (404)
T 2o1b_A 244 VAIEIYSLSKGYNMSG-FRVGFAVGNKDMIQALKK------YQTHTNAGMFGALQDAAIYALNHYDDFLEEQSNVFKTRR 316 (404)
T ss_dssp HEEEEEESTTTTTCGG-GCCEEEEECHHHHHHHHH------HHHHHCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred CEEEEEecchhccCch-hheEeEecCHHHHHHHHH------HHhhccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 2234558999997 56 899999999999888765 23445678899999999999976311 23455566677
Q ss_pred HHHHHHHHcccCCCceeeeece-eEEEEEEEeecCccchhhHHHHHHHHHH-HcCcEEeec-------CCEEEEeCCccc
Q psy8199 559 KKITKALTSLITHPKIINFRQK-GMIWAFDVIIEDPEQIETFSKKFFVAAL-KNELLLRPI-------GNTVYLMPPYIL 629 (965)
Q Consensus 559 ~~l~~~L~~l~~~~~i~~v~g~-G~~~~i~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~-------~~~lR~~p~~~~ 629 (965)
+++.+.|+++ ++..+.+. |.++++.+. ++. ....+.+.|. ++||++.++ .+++|++++.
T Consensus 317 ~~l~~~L~~~----g~~~~~~~~g~~~~~~~~--~~~----~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~-- 384 (404)
T 2o1b_A 317 DRFEAMLAKA----DLPFVHAKGGIYVWLETP--PGY----DSEQFEQFLVQEKSILVAPGKPFGENGNRYVRISLAL-- 384 (404)
T ss_dssp HHHHHHHHHT----TCCEECCCBSSEEEEECC--TTC----CHHHHHHHHHHHHCEECEESGGGCGGGTTEEEEECCS--
T ss_pred HHHHHHHHhc----CCeecCCCcceEEEEeCC--CCC----CHHHHHHHHHHHCCEEEeCchhhCcCCCCeEEEEEcC--
Confidence 7777777664 34444554 445666664 211 1345677776 679999874 3699999875
Q ss_pred CHHHHHHHHHhhhccccc
Q psy8199 630 NKNEIQHMTSAIFQTFNE 647 (965)
Q Consensus 630 t~~~i~~~~~~l~~~~~~ 647 (965)
++++++++++++.+.+.+
T Consensus 385 ~~e~l~~~l~~l~~~l~~ 402 (404)
T 2o1b_A 385 DDQKLDEAAIRLTELAYL 402 (404)
T ss_dssp CTTHHHHHHHHHHGGGGG
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 778999999998876543
|
| >1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-25 Score=252.12 Aligned_cols=326 Identities=13% Similarity=0.141 Sum_probs=224.2
Q ss_pred EecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHH
Q psy8199 249 ITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVE 328 (965)
Q Consensus 249 ~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~ 328 (965)
++.+|++++||.++. +++| .+|++.+|+.++++....+ +.....++.+.++++++.+.+++++++||++|++
T Consensus 19 ~~~~~~~~idl~~~~--~~~~-~~~~v~~a~~~~~~~~~~y-----~~~~~~~l~~~la~~~~~~~~~v~~~~g~~~al~ 90 (364)
T 1lc5_A 19 LGISPDQLLDFSANI--NPLG-MPVSVKRALIDNLDCIERY-----PDADYFHLHQALARHHQVPASWILAGNGETESIF 90 (364)
T ss_dssp HTSCGGGSEECSSCC--CTTC-CCHHHHHHHHHTGGGGGSC-----CCTTCHHHHHHHHHHHTSCGGGEEEESSHHHHHH
T ss_pred cCCCccceEEecccc--CCCC-CCHHHHHHHHHHHHHhhcC-----CCCCHHHHHHHHHHHHCcCHHHEEECCCHHHHHH
Confidence 467899999998875 4577 7899999999988663222 2334567888888888766679999999999999
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHH
Q psy8199 329 VALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAI 408 (965)
Q Consensus 329 ~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 408 (965)
.+++.+ . + ++|++.+++||++...+...+. .+..+|........ .+
T Consensus 91 ~~~~~~-~--------g-d~vl~~~p~y~~~~~~~~~~g~-------------~~~~v~~~~~~~~~-----------~l 136 (364)
T 1lc5_A 91 TVASGL-K--------P-RRAMIVTPGFAEYGRALAQSGC-------------EIRRWSLREADGWQ-----------LT 136 (364)
T ss_dssp HHHHHH-C--------C-SEEEEEESCCTHHHHHHHHTTC-------------EEEEEECCGGGTTC-----------CC
T ss_pred HHHHHc-C--------C-CeEEEeCCCcHHHHHHHHHcCC-------------eEEEEeCCcccccc-----------hh
Confidence 999877 1 4 7899999999998654433322 22333332100000 01
Q ss_pred HHHHHHHHhCCCcEE-EEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccc---cCCCc
Q psy8199 409 FDLEILLKKNHNKIA-AIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEH---AEIWP 484 (965)
Q Consensus 409 ~~le~~l~~~~~~~a-aii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~---~~~~p 484 (965)
+++.+.+ .++++ .++++| +|++|.+. +.+++++|.++|++||+++|+||+|++|++.+.. .... ++...
T Consensus 137 ~~~~~~~---~~~~~~v~i~~p--~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~-~~~~~~~~~~~i 209 (364)
T 1lc5_A 137 DAILEAL---TPDLDCLFLCTP--NNPTGLLP-ERPLLQAIADRCKSLNINLILDEAFIDFIPHETG-FIPALKDNPHIW 209 (364)
T ss_dssp TTHHHHC---CTTCCEEEEESS--CTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCC-SGGGCTTCTTEE
T ss_pred HHHHHhc---cCCCCEEEEeCC--CCCCCCCC-CHHHHHHHHHHhhhcCcEEEEECcChhhccCccc-hhhHhccCCCEE
Confidence 2222222 23344 444566 88888765 7889999999999999999999999988654322 1222 23223
Q ss_pred ceeeeccccC-CCcccceeee-ecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh-cccHHHHHHHHHHHH
Q psy8199 485 DFLCLSKGIT-GGYLPLSLVM-TTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN-KDNILQRISQDMKKI 561 (965)
Q Consensus 485 Divt~sK~l~-gG~~pig~v~-~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~-~~~~~~~~~~~~~~l 561 (965)
.+.++||+++ +| +++|+++ +++++++.+.. ...+++.|+++++++.++|+... -+...++++++.+++
T Consensus 210 ~~~s~sK~~~~~G-~r~G~~~~~~~~~~~~l~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l 280 (364)
T 1lc5_A 210 VLRSLTKFYAIPG-LRLGYLVNSDDAAMARMRR--------QQMPWSVNALAALAGEVALQDSAWQQATWHWLREEGARF 280 (364)
T ss_dssp EEEESTTTTTCTT-TCCEEEECCCHHHHHHHHH--------HSCTTCSCHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHH
T ss_pred EEEECchhhcCCc-cceEEEEECCHHHHHHHHH--------hCCCCCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence 3447899997 56 7999999 99999888765 12467889999999998886411 122344455556666
Q ss_pred HHHHHcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec-------CCEEEEeCCcccCHHHH
Q psy8199 562 TKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-------GNTVYLMPPYILNKNEI 634 (965)
Q Consensus 562 ~~~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-------~~~lR~~p~~~~t~~~i 634 (965)
.+.|++ .|++..+++.|.++.+.+. .+ ...+.+.|.++||.+.++ .+++|++. .+.+++
T Consensus 281 ~~~L~~---~~~~~~~~~~g~~~~~~~~-~~-------~~~l~~~l~~~gi~v~~g~~~~~~~~~~iRis~---~~~~~~ 346 (364)
T 1lc5_A 281 YQALCQ---LPLLTVYPGRANYLLLRCE-RE-------DIDLQRRLLTQRILIRSCANYPGLDSRYYRVAI---RSAAQN 346 (364)
T ss_dssp HHHHHT---STTEEECCCSSSEEEEEES-CT-------TCCHHHHHHTTTEECEECTTSTTCCTTEEEEEC---CCHHHH
T ss_pred HHHHhc---CCCCEECCCCCeEEEEECC-Cc-------HHHHHHHHHHCCcEEeeCcccCCCCCCEEEEEe---CCHHHH
Confidence 666654 4666666778888887764 11 224667888999999874 36899993 468888
Q ss_pred HHHHHhhhcccc
Q psy8199 635 QHMTSAIFQTFN 646 (965)
Q Consensus 635 ~~~~~~l~~~~~ 646 (965)
+++++++.+.+.
T Consensus 347 ~~l~~~l~~~~~ 358 (364)
T 1lc5_A 347 ERLLAALRNVLT 358 (364)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHHhh
Confidence 888888766543
|
| >1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-25 Score=254.22 Aligned_cols=339 Identities=11% Similarity=0.060 Sum_probs=237.1
Q ss_pred cCCcccccccccchhccCCCCCHHHHHHHHHHHhhc-cccccCCCCcHHHHHHHHHHHhhcC--CCCCeEEEcCChhHHH
Q psy8199 251 FSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKL-EHVMLSNLTHKPVIKLSEKLSSLTQ--YKLGHCFYGSDGASAV 327 (965)
Q Consensus 251 ~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~-~~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~~~sGseA~ 327 (965)
.+|+.++|+.+|.+ .+| .+|.+.+|+.++++.. ..+....+..+....+++.+.+..+ .+.+++++++||++|+
T Consensus 27 ~~g~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~ 103 (388)
T 1j32_A 27 AEGIDVCSFSAGEP--DFN-TPKHIVEAAKAALEQGKTRYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSI 103 (388)
T ss_dssp TTTCCCEECCCSSC--SSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHH
T ss_pred hcCCCEEECCCCCC--CCC-CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHH
Confidence 46899999988854 566 5899999999988653 2233233455667777777776554 2457899999999999
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHH
Q psy8199 328 EVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCA 407 (965)
Q Consensus 328 ~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 407 (965)
+.+++.+.. ++++|++.+++||++.......+ ..+..+|........ .|
T Consensus 104 ~~~~~~~~~--------~gd~vl~~~~~~~~~~~~~~~~g-------------~~~~~v~~~~~~~~~----------~d 152 (388)
T 1j32_A 104 FNLMLAMIE--------PGDEVIIPAPFWVSYPEMVKLAE-------------GTPVILPTTVETQFK----------VS 152 (388)
T ss_dssp HHHHHHHCC--------TTCEEEEESSCCTHHHHHHHHTT-------------CEEEEECCCGGGTTC----------CC
T ss_pred HHHHHHhcC--------CCCEEEEcCCCChhHHHHHHHcC-------------CEEEEecCCcccCCC----------CC
Confidence 999998732 56789999999998754322211 123344432110000 26
Q ss_pred HHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccccc-ccccc-----cC
Q psy8199 408 IFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKF-FACEH-----AE 481 (965)
Q Consensus 408 ~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~-~~~~~-----~~ 481 (965)
+++|+++++ +++++|++++ ++|++|.+. +.+.+++|.++|++||+++|+||+|++|.+.|.. ..... .+
T Consensus 153 ~~~l~~~l~---~~~~~v~~~~-p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~ 227 (388)
T 1j32_A 153 PEQIRQAIT---PKTKLLVFNT-PSNPTGMVY-TPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYE 227 (388)
T ss_dssp HHHHHHHCC---TTEEEEEEES-SCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHH
T ss_pred HHHHHHhcC---cCceEEEEeC-CCCCCCcCC-CHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCCHHHccccccC
Confidence 788888875 3577777777 789999875 6788999999999999999999999988765532 11111 33
Q ss_pred CCcceeeeccccC-CCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc--ccHHHHHHHHH
Q psy8199 482 IWPDFLCLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK--DNILQRISQDM 558 (965)
Q Consensus 482 ~~pDivt~sK~l~-gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~--~~~~~~~~~~~ 558 (965)
..+++.++||.++ .| +++|++++++++++.+.. ...+++++.++++++++.++|+...+ ++..++++++.
T Consensus 228 ~~~~~~s~sK~~~~~G-~r~G~~~~~~~~~~~l~~------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~ 300 (388)
T 1j32_A 228 RSVVCSGFAKTYAMTG-WRVGFLAGPVPLVKAATK------IQGHSTSNVCTFAQYGAIAAYENSQDCVQEMLAAFAERR 300 (388)
T ss_dssp TEEEEEESTTTTTCTT-TCCEEEECCHHHHHHHHH------HHHTTTCSCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHH
T ss_pred CEEEEeechhccCCcc-cceEEEEeCHHHHHHHHH------HHhhcccCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 4455668999997 45 899999999999887765 33556788899999999999873221 23556677777
Q ss_pred HHHHHHHHcccCCCceeeeeceeE-EEEEEEeecCccchhhHHHHHHHHHHH-cCcEEeec-----CCEEEEeCCcccCH
Q psy8199 559 KKITKALTSLITHPKIINFRQKGM-IWAFDVIIEDPEQIETFSKKFFVAALK-NELLLRPI-----GNTVYLMPPYILNK 631 (965)
Q Consensus 559 ~~l~~~L~~l~~~~~i~~v~g~G~-~~~i~~~~~~~~~~~~~~~~~~~~l~~-~Gi~~~~~-----~~~lR~~p~~~~t~ 631 (965)
+++.+.|+++ +++..+.+.|. +..+.+. ..+ .....+.+.|.+ +||++.++ .+++|++++ .++
T Consensus 301 ~~l~~~L~~~---~g~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~ 370 (388)
T 1j32_A 301 RYMLDALNAM---PGLECPKPDGAFYMFPSIA-KTG----RSSLDFCSELLDQHQVATVPGAAFGADDCIRLSYA--TDL 370 (388)
T ss_dssp HHHHHHHHTC---TTCBCCCCCBTTEECCBCG-GGT----CCHHHHHHHHHHHHCEECEEGGGGTCTTBEEEECC--SCH
T ss_pred HHHHHHHhhC---CCCcccCCCeeEEEEEecC-CCC----CCHHHHHHHHHHhCCEEEeChhhhCCCCcEEEEec--CCH
Confidence 8888877664 45544445544 3333332 100 113467778875 79999874 378999975 689
Q ss_pred HHHHHHHHhhhccc
Q psy8199 632 NEIQHMTSAIFQTF 645 (965)
Q Consensus 632 ~~i~~~~~~l~~~~ 645 (965)
++++++++++.+.+
T Consensus 371 ~~i~~~~~~l~~~l 384 (388)
T 1j32_A 371 DTIKRGMERLEKFL 384 (388)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998887654
|
| >2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.94 E-value=1e-25 Score=254.37 Aligned_cols=330 Identities=11% Similarity=0.037 Sum_probs=227.4
Q ss_pred cCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCc-HHHHHHHHHHHhhc----CCC--CC-eEEEcCC
Q psy8199 251 FSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTH-KPVIKLSEKLSSLT----QYK--LG-HCFYGSD 322 (965)
Q Consensus 251 ~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~-~~~~~la~~l~~~~----~~~--~~-~v~~~~s 322 (965)
.+|++++||.+|.+ .+| .+|++.+|+.++++... ...|+. ....++.+.+++++ +.. .+ ++++++|
T Consensus 22 ~~g~~~idl~~~~~--~~~-~~~~v~~a~~~~~~~~~---~~~y~~~~~~~~l~~~ia~~~~~~~g~~~~~~~~v~~~~g 95 (376)
T 2dou_A 22 ERGVGLIDLSIGST--DLP-PPEAPLKALAEALNDPT---TYGYCLKSCTLPFLEEAARWYEGRYGVGLDPRREALALIG 95 (376)
T ss_dssp HTTCCCEECSSCCC--CCC-CCHHHHHHHHHHTTCGG---GSSCCCHHHHHHHHHHHHHHHHHHHSCCCCTTTSEEEESS
T ss_pred ccCCCEEeccCCCC--CCC-CCHHHHHHHHHHHhCCC---cCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCC
Confidence 46889999988854 677 48999999999886521 122333 34455666666554 643 35 8999999
Q ss_pred hhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhH
Q psy8199 323 GASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANE 402 (965)
Q Consensus 323 GseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (965)
|++|++.+++.+.. ++++|++.+++||++...+...+. .+..+|.++...
T Consensus 96 ~~~a~~~~~~~l~~--------~gd~vl~~~p~y~~~~~~~~~~g~-------------~~~~~~~~~~~~--------- 145 (376)
T 2dou_A 96 SQEGLAHLLLALTE--------PEDLLLLPEVAYPSYFGAARVASL-------------RTFLIPLREDGL--------- 145 (376)
T ss_dssp HHHHHHHHHHHHCC--------TTCEEEEESSCCHHHHHHHHHTTC-------------EEEEECBCTTSS---------
T ss_pred cHHHHHHHHHHhcC--------CCCEEEECCCCcHhHHHHHHHcCC-------------EEEEeeCCCCCC---------
Confidence 99999999987632 468899999999998654433322 223333311110
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccc-cccccC
Q psy8199 403 IARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFF-ACEHAE 481 (965)
Q Consensus 403 ~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~-~~~~~~ 481 (965)
.|+++|++++. +++++|+++. ++|++|.+. +.+++++|.++|++||+++|+||+|++|.+.|... .....+
T Consensus 146 ---~d~~~l~~~l~---~~~~~v~l~~-p~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~ 217 (376)
T 2dou_A 146 ---ADLKAVPEGVW---REAKVLLLNY-PNNPTGAVA-DWGYFEEALGLARKHGLWLIHDNPYVDQVYEGEAPSPLALPG 217 (376)
T ss_dssp ---BCGGGSCHHHH---HHEEEEEECS-SCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSTT
T ss_pred ---CCHHHHHHhhc---cCceEEEECC-CCCCcCccC-CHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCC
Confidence 24567777775 2467777765 588999765 78899999999999999999999999887665421 222222
Q ss_pred ---CCcceeeeccccC-CCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc--ccHHHHHH
Q psy8199 482 ---IWPDFLCLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK--DNILQRIS 555 (965)
Q Consensus 482 ---~~pDivt~sK~l~-gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~--~~~~~~~~ 555 (965)
....+.++||.++ .| +++|++++++++++.+.. ..+..+++.|+++++++.++|+...+ +...++++
T Consensus 218 ~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~l~~------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~ 290 (376)
T 2dou_A 218 AKERVVELFSLSKSYNLAG-FRLGFALGSEEALARLER------VKGVIDFNQYAGVLRMGVEALKTPKEVVRGYARVYR 290 (376)
T ss_dssp GGGTEEEEEEHHHHHTCGG-GCCEEEEECHHHHHHHHH------HHHHHCCCSCHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEecchhhcCChh-heeEEEecCHHHHHHHHH------HHHhcccCCCHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 2234457899997 45 899999999999988765 23445677899999999998864211 22345556
Q ss_pred HHHHHHHHHHHcccCCCceeeeece-eEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec-------CCEEEEeCCc
Q psy8199 556 QDMKKITKALTSLITHPKIINFRQK-GMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-------GNTVYLMPPY 627 (965)
Q Consensus 556 ~~~~~l~~~L~~l~~~~~i~~v~g~-G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-------~~~lR~~p~~ 627 (965)
++.+++.+.|+++ +..+.+. |+++++.+. ++. ....+.+.|.++||++.++ .+++|++++
T Consensus 291 ~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~l~~~gi~v~~g~~f~~~~~~~~Ris~~- 358 (376)
T 2dou_A 291 ERALGMAEALKGV-----LSLLPPRATMYLWGRLP--EGV----DDLEFGLRLVERGVALAPGRGFGPGGKGFVRIALV- 358 (376)
T ss_dssp HHHHHHHHHHTTT-----SEECCCCBSSEEEEECC--TTC----CHHHHHHHHHHTTEECEEGGGGCGGGTTEEEEECC-
T ss_pred HHHHHHHHHHHHh-----cCccCCCeeEEEEEECC--CCC----CHHHHHHHHHHCCEEEcCchhhCCCCCCeEEEEec-
Confidence 6666666666543 3333443 556667664 211 1346778888899999874 379999976
Q ss_pred ccCHHHHHHHHHhhhcc
Q psy8199 628 ILNKNEIQHMTSAIFQT 644 (965)
Q Consensus 628 ~~t~~~i~~~~~~l~~~ 644 (965)
.++++++++++++.+.
T Consensus 359 -~~~~~i~~~l~~l~~~ 374 (376)
T 2dou_A 359 -RPLEELLEAAKRIREA 374 (376)
T ss_dssp -SCHHHHHHHHHHHHHT
T ss_pred -CCHHHHHHHHHHHHHH
Confidence 3889999999888754
|
| >3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.94 E-value=3e-25 Score=249.25 Aligned_cols=322 Identities=9% Similarity=0.026 Sum_probs=229.5
Q ss_pred CCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHH
Q psy8199 252 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVAL 331 (965)
Q Consensus 252 dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al 331 (965)
+++.++|+.++. ++++ .+|++.+|+.++++... .++.+...++.++++++++.+.+++++++||++|++.++
T Consensus 30 ~~~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~-----~y~~~~~~~lr~~la~~~~~~~~~v~~~~g~t~a~~~~~ 101 (363)
T 3ffh_A 30 GLTKITKLSSNE--NPLG-TSKKVAAIQANSSVETE-----IYPDGWASSLRKEVADFYQLEEEELIFTAGVDELIELLT 101 (363)
T ss_dssp TCSCCEECSSCS--CTTC-CCHHHHHHHHTCBSCCC-----BC----CHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHH
T ss_pred CCCceEEccCCC--CCCC-CCHHHHHHHHHHHHHhh-----cCCCcchHHHHHHHHHHhCCChhhEEEeCCHHHHHHHHH
Confidence 346899998873 4566 68999999998775432 334455678888899888766789999999999999999
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHH
Q psy8199 332 KMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDL 411 (965)
Q Consensus 332 ~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l 411 (965)
+.+. .++++|++.+++|+++.......+ ..+..+|.... +. .|+++|
T Consensus 102 ~~~~--------~~gd~vl~~~~~~~~~~~~~~~~g-------------~~~~~v~~~~~-~~-----------~d~~~l 148 (363)
T 3ffh_A 102 RVLL--------DTTTNTVMATPTFVQYRQNALIEG-------------AEVREIPLLQD-GE-----------HDLEGM 148 (363)
T ss_dssp HHHC--------STTCEEEEEESSCHHHHHHHHHHT-------------CEEEEEECCTT-SC-----------CCHHHH
T ss_pred HHHc--------cCCCEEEEcCCChHHHHHHHHHcC-------------CEEEEecCCCC-CC-----------cCHHHH
Confidence 9763 256889999999998744333322 13344554321 11 267888
Q ss_pred HHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcc----ee
Q psy8199 412 EILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPD----FL 487 (965)
Q Consensus 412 e~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pD----iv 487 (965)
++++. +++++|+++. ++|++|.+. +.+.+.+|.+.|++ |+++|+||+|++|++ |...........+| +.
T Consensus 149 ~~~i~---~~~~~v~~~~-p~nptG~~~-~~~~l~~l~~~~~~-~~~li~De~~~~~~~-~~~~~~~~~~~~~~~~i~~~ 221 (363)
T 3ffh_A 149 LNAID---EKTTIVWICN-PNNPTGNYI-ELADIQAFLDRVPS-DVLVVLDEAYIEYVT-PQPEKHEKLVRTYKNLIITR 221 (363)
T ss_dssp HHHCC---TTEEEEEEES-SCTTTCCCC-CHHHHHHHHTTSCT-TSEEEEECTTGGGCS-SCCCCCGGGGGTCTTEEEEE
T ss_pred HHhcc---cCCCEEEEeC-CCCCcCCCc-CHHHHHHHHHhCCC-CcEEEEeCchHhhcC-ccccCHHHHhhcCCCEEEEe
Confidence 88874 3577777777 699999877 55556666666666 999999999998877 65433333322233 44
Q ss_pred eeccccC-CCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHH
Q psy8199 488 CLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK-DNILQRISQDMKKITKAL 565 (965)
Q Consensus 488 t~sK~l~-gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~-~~~~~~~~~~~~~l~~~L 565 (965)
++||.++ .| +++|++++++++++.+.. ...+++.|+++++++.++|+..+. +...++++++.+++.+.|
T Consensus 222 s~sK~~g~~G-~r~G~~~~~~~~~~~l~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l 292 (363)
T 3ffh_A 222 TFSKIYGLAS-ARVGYGIADKEIIRQLNI--------VRPPFNTTSIGQKLAIEAIKDQAFIGECRTSNANGIKQYEAFA 292 (363)
T ss_dssp ESSSTTCCSS-CCCEEEEECHHHHHHHHH--------TCCSCCCBHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred echhhhcCch-hceeeeecCHHHHHHHHH--------hCCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899997 55 899999999999988875 224778999999999999963211 234455566666666666
Q ss_pred HcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec-----CCEEEEeCCcccCHHHHHHHHHh
Q psy8199 566 TSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-----GNTVYLMPPYILNKNEIQHMTSA 640 (965)
Q Consensus 566 ~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-----~~~lR~~p~~~~t~~~i~~~~~~ 640 (965)
++ ++++..+++.|.++.+.+. . ....+.+.|.++||++.++ .+++|++++ +++++++++++
T Consensus 293 ~~---~~g~~~~~~~~~~~~~~~~-~-------~~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~---~~~~i~~~~~~ 358 (363)
T 3ffh_A 293 KR---FEKVKLYPANGNFVLIDLG-I-------EAGTIFSYLEKNGYITRSGAALGFPTAVRITIG---KEEDNSAVIAL 358 (363)
T ss_dssp HH---CTTCEECCCCSSEEEEECS-S-------CHHHHHHHHHHTTEECEETTTTTCTTEEEEECC---CHHHHHHHHHH
T ss_pred hh---CCCceECCCCCeEEEEECC-C-------CHHHHHHHHHHCCeEEEeCccCCCCCeEEEECC---CHHHHHHHHHH
Confidence 55 2456666778888877764 1 1446788899999999884 379999965 89999999988
Q ss_pred hhcc
Q psy8199 641 IFQT 644 (965)
Q Consensus 641 l~~~ 644 (965)
+.+.
T Consensus 359 l~~~ 362 (363)
T 3ffh_A 359 LEKL 362 (363)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7653
|
| >3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.3e-25 Score=256.78 Aligned_cols=341 Identities=15% Similarity=0.088 Sum_probs=237.0
Q ss_pred CcccccccccchhccCCCCCHHHHHHHHHHHhhcc----ccccCCCCcHHHHHHHHHHHhhcCC-CCCeEEEcCChhHHH
Q psy8199 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLE----HVMLSNLTHKPVIKLSEKLSSLTQY-KLGHCFYGSDGASAV 327 (965)
Q Consensus 253 G~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~----~~~~~~~~~~~~~~la~~l~~~~~~-~~~~v~~~~sGseA~ 327 (965)
+..+|||.+|.+.. .++.++++.+++.++++... .|....+..+.+..+++.+.+..+. +.++|++++||++|+
T Consensus 75 ~~~~i~l~~g~p~~-~~~p~~~v~~a~~~~l~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~v~~t~G~~~al 153 (448)
T 3aow_A 75 TSDIISLAGGLPNP-KTFPKEIIRDILVEIMEKYADKALQYGTTKGFTPLRETLMKWLGKRYGISQDNDIMITSGSQQAL 153 (448)
T ss_dssp TSSSEECCCCCCCG-GGSCHHHHHHHHHHHHHHSHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCTTSEEEEESSHHHHH
T ss_pred CCCcEeCCCCCCCc-hhCCHHHHHHHHHHHHHhhhHHHhCCCCCCCcHHHHHHHHHHHHHhcCcCChhhEEEeCcHHHHH
Confidence 45799999887643 45788999999999887631 2322233455566666666555565 568999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHH
Q psy8199 328 EVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCA 407 (965)
Q Consensus 328 ~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 407 (965)
+.+++++.. +++.|++.+++||++.......+. .+..+|.... + .|
T Consensus 154 ~~~~~~l~~--------~Gd~Vlv~~p~y~~~~~~~~~~g~-------------~~~~v~~~~~-g------------~d 199 (448)
T 3aow_A 154 DLIGRVFLN--------PGDIVVVEAPTYLAALQAFNFYEP-------------QYIQIPLDDE-G------------MK 199 (448)
T ss_dssp HHHHHHHCC--------TTCEEEEEESCCHHHHHHHHTTCC-------------EEEEEEEETT-E------------EC
T ss_pred HHHHHHHcC--------CCCEEEEeCCChHHHHHHHHHcCC-------------EEEEeccCCC-C------------CC
Confidence 999998742 568899999999998544333221 2233332110 0 26
Q ss_pred HHHHHHHHHh---CCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccccc----cccccc
Q psy8199 408 IFDLEILLKK---NHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKF----FACEHA 480 (965)
Q Consensus 408 ~~~le~~l~~---~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~----~~~~~~ 480 (965)
+++|+++++. ...++++|++.|.++|++|.+. +.+++++|.++|++||+++|+||+|+++.+.|.. ..++..
T Consensus 200 ~~~L~~~l~~~~~~~~~~k~v~~~~~~~NPtG~~~-~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~~~~~~~~~~~~ 278 (448)
T 3aow_A 200 VEILEEKLKELKSQGKKVKVVYTVPTFQNPAGVTM-NEDRRKYLLELASEYDFIVVEDDPYGELRYSGNPEKKIKALDNE 278 (448)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECSCTTCBCSSCCCCCTGGGCTT
T ss_pred HHHHHHHHhhhhccCCCCeEEEECCCCCCCcCCCC-CHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHhcCCC
Confidence 7888888861 1235777755553688888764 7889999999999999999999999988665542 222222
Q ss_pred CCCcceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc----ccHHHHHHH
Q psy8199 481 EIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK----DNILQRISQ 556 (965)
Q Consensus 481 ~~~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~----~~~~~~~~~ 556 (965)
+..+++.+|||.++.| +|+|++++++++++.+.. ..+..+++.|+++++++.++|+...- +...+.+++
T Consensus 279 ~~vi~~~S~SK~~~~G-lriG~v~~~~~l~~~l~~------~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~ 351 (448)
T 3aow_A 279 GRVIYLGTFSKILAPG-FRIGWMVGDPGIIRKMEI------AKQSTDLCTNVFGQVVAWRYVDGGYLEKHIPEIRKFYKP 351 (448)
T ss_dssp SCEEEEEESTTTTCGG-GCCEEEEECHHHHHHHHH------HHHHHHSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred CCEEEEccchhhcccc-ccEEEEEeCHHHHHHHHH------HHHHhcCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3345667899999866 899999999999988765 23345677899999999999864211 223444456
Q ss_pred HHHHHHHHHHcccCCC-ceeeeec-eeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec---------CCEEEEeC
Q psy8199 557 DMKKITKALTSLITHP-KIINFRQ-KGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI---------GNTVYLMP 625 (965)
Q Consensus 557 ~~~~l~~~L~~l~~~~-~i~~v~g-~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~---------~~~lR~~p 625 (965)
+.+++.+.|++. .| ++..+.+ .|+++++.+. ++. ....+.+.|.++||++.|+ .+++|+++
T Consensus 352 ~~~~l~~~L~~~--~~~g~~~~~p~~g~~~~v~~~--~~~----~~~~l~~~l~~~gV~v~pg~~f~~~~~~~~~iRls~ 423 (448)
T 3aow_A 352 RRDAMLEALEEF--MPEGVKWTKPEGGMFIWVTLP--DGI----DSKKMLERAIKKGVAYVPGEAFYAHRDVKNTMRLNF 423 (448)
T ss_dssp HHHHHHHHHHHH--CCTTCEECCCSBSSEEEEECS--TTC----CHHHHHHHHHHTTEECEEGGGGSTTCCCCSEEEEEC
T ss_pred HHHHHHHHHHHh--CCCCeEEeCCCccEEEEEEcC--CCC----CHHHHHHHHHHCCcEEEcchhhcCCCCCCCEEEEEe
Confidence 666666666542 23 3544444 4667777764 111 1346788899999999873 36899998
Q ss_pred CcccCHHHHHHHHHhhhccc
Q psy8199 626 PYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 626 ~~~~t~~~i~~~~~~l~~~~ 645 (965)
+. .++++++++++++.+.+
T Consensus 424 ~~-~~~e~i~~~~~~L~~~l 442 (448)
T 3aow_A 424 TY-VDEDKIMEGIKRLAETI 442 (448)
T ss_dssp SS-SCTHHHHHHHHHHHHHH
T ss_pred CC-CCHHHHHHHHHHHHHHH
Confidence 75 48899999999987654
|
| >3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.94 E-value=2.3e-25 Score=251.46 Aligned_cols=332 Identities=12% Similarity=0.023 Sum_probs=230.3
Q ss_pred ecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCC--CCCeEEEcCChhHHH
Q psy8199 250 TFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQY--KLGHCFYGSDGASAV 327 (965)
Q Consensus 250 d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~--~~~~v~~~~sGseA~ 327 (965)
+.+| .+|||.+|. .+++ .+|.|.+|+.+++.....+....+..+...++++.+.+.++. +.+++++++||++|+
T Consensus 20 ~~~g-~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~t~g~~~al 95 (376)
T 3ezs_A 20 TPKK-RGLDLGIGE--PQFE-TPKFIQDALKNHTHSLNIYPKSAFEESLRAAQRGFFKRRFKIELKENELISTLGSREVL 95 (376)
T ss_dssp CCSS-CCCBCSSCC--CCSC-CCHHHHHHHHTTGGGGGSCCCTTCCHHHHHHHHHHHHHHHSCCCCGGGEEEESSSHHHH
T ss_pred hccC-CEEEeCCCC--CCCC-CCHHHHHHHHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEECcCcHHHH
Confidence 4578 999999885 4566 689999999988855544443444567788888888877765 568999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHH
Q psy8199 328 EVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCA 407 (965)
Q Consensus 328 ~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 407 (965)
+.+++.+... +++++|++.+++||++.......+. .+..+|....... +
T Consensus 96 ~~~~~~~~~~------~~gd~vl~~~p~~~~~~~~~~~~g~-------------~~~~~~~~~~~~~------------~ 144 (376)
T 3ezs_A 96 FNFPSFVLFD------YQNPTIAYPNPFYQIYEGAAKFIKA-------------KSLLMPLTKENDF------------T 144 (376)
T ss_dssp HHHHHHHTTT------CSSCEEEEEESCCTHHHHHHHHTTC-------------EEEEEECCGGGTS------------C
T ss_pred HHHHHHHcCC------CCCCEEEEecCCcHhHHHHHHHcCC-------------EEEEcccCCCCCc------------c
Confidence 9999987430 1268999999999987544333322 2333443211110 1
Q ss_pred HHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccccccccc---------
Q psy8199 408 IFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACE--------- 478 (965)
Q Consensus 408 ~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~--------- 478 (965)
+ +|++++.+ ++.+|++.. ++|++|.+. +.+.+++|.++|++||+++|+||+|++|.+.|......
T Consensus 145 ~-~l~~~~~~---~~~~v~~~~-p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~ 218 (376)
T 3ezs_A 145 P-SLNEKELQ---EVDLVILNS-PNNPTGRTL-SLEELISWVKLALKHDFILINDECYSEIYENTPPPSLLEACMLAGNE 218 (376)
T ss_dssp C-CCCHHHHH---HCSEEEECS-SCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBSSSCCCCHHHHHHHTTCT
T ss_pred h-hHHhhhcc---CCCEEEEcC-CCCCcCCCC-CHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCHHHcccccccc
Confidence 1 34445543 234455544 489999766 67779999999999999999999999987776433321
Q ss_pred ccCCCcceeeeccccC-CCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHH
Q psy8199 479 HAEIWPDFLCLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQD 557 (965)
Q Consensus 479 ~~~~~pDivt~sK~l~-gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~ 557 (965)
..+....+.+|||.++ .| +++|++++++++++.+.. ..+..+++.|+++++++.++|+. .+..++.++.
T Consensus 219 ~~~~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~ 288 (376)
T 3ezs_A 219 AFKNVLVIHSLSKRSSAPG-LRSGFIAGDSRLLEKYKA------FRAYLGYTSANAIQKASEAAWLD---DRHAEFFRNI 288 (376)
T ss_dssp TCTTEEEEEESTTTTTCGG-GCCEEEEECHHHHHHHHH------HHTTTCCCCCHHHHHHHHHHHHC---SHHHHHHHHH
T ss_pred ccCcEEEEecchhccCCcc-ceeEEEeeCHHHHHHHHH------HHhhhcCCCChHHHHHHHHHHhC---cHHHHHHHHH
Confidence 2344455668999996 45 899999999999988865 34556788999999999999873 2233333333
Q ss_pred HHHHHHHHHcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHH-cCcEEeec---------CCEEEEeCCc
Q psy8199 558 MKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALK-NELLLRPI---------GNTVYLMPPY 627 (965)
Q Consensus 558 ~~~l~~~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~-~Gi~~~~~---------~~~lR~~p~~ 627 (965)
.+..++.+.+..+ ++. .++.|.++++.+. + ...+.+.|.+ +||++.|+ .+++|++++
T Consensus 289 ~~~~~~~l~~~l~--~~~-~~~~~~~~~~~~~--~-------~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~- 355 (376)
T 3ezs_A 289 YANNLKLARKIFK--NTL-IYPYSFYVYLPVQ--N-------GENFAKTLYQNEGIITLPALYLGRNRIGADYVRLALV- 355 (376)
T ss_dssp HHHHHHHHHHHST--TCC-CCSBSSEEEEECS--C-------HHHHHHHHHHHHCCBCEEGGGGCSTTTTTTEEEEECC-
T ss_pred HHHHHHHHHHHhc--CCC-CCCcceEEEEECC--C-------HHHHHHHHHHhCCEEEeCcHHhCCCCCCCCeEEEEEc-
Confidence 3333333333211 233 4566777777663 1 3467778887 89999863 379999965
Q ss_pred ccCHHHHHHHHHhhhcccc
Q psy8199 628 ILNKNEIQHMTSAIFQTFN 646 (965)
Q Consensus 628 ~~t~~~i~~~~~~l~~~~~ 646 (965)
.++++++++++++.+++.
T Consensus 356 -~~~~~i~~~l~~l~~~l~ 373 (376)
T 3ezs_A 356 -YDTPLLEKPLEIIETYRE 373 (376)
T ss_dssp -SCHHHHHHHHHHHHHHHC
T ss_pred -CCHHHHHHHHHHHHHHHH
Confidence 499999999999876543
|
| >2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=6.7e-26 Score=257.89 Aligned_cols=338 Identities=12% Similarity=0.058 Sum_probs=233.0
Q ss_pred CcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCC-cHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHH
Q psy8199 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLT-HKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVAL 331 (965)
Q Consensus 253 G~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~-~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al 331 (965)
++.++||.+|.+ .+.||.+|++.+++.++++...... ..|. .....++.+.++++++.+.++|++++||++|++.++
T Consensus 31 ~~~~i~l~~g~~-~~~~~~~~~v~~a~~~~~~~~~~~~-~~y~~~~~~~~l~~~la~~~g~~~~~v~~~~g~~~al~~~~ 108 (397)
T 2zyj_A 31 RPGILSFAGGLP-APELFPKEEAAEAAARILREKGEVA-LQYSPTEGYAPLRAFVAEWIGVRPEEVLITTGSQQALDLVG 108 (397)
T ss_dssp STTCEEESSCCC-CGGGCCHHHHHHHHHHHHHHHHHHH-TSCCCTTCCHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHH
T ss_pred CCCceecCCCCC-CchhCCHHHHHHHHHHHHHhcchhh-hCCCCCCCCHHHHHHHHHHhCCChhhEEEeccHHHHHHHHH
Confidence 568999988875 3458899999999999887632111 1222 223456777777777655679999999999999999
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHH
Q psy8199 332 KMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDL 411 (965)
Q Consensus 332 ~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l 411 (965)
+.+.. ++++|++.+++||++.......+. .+..+|.... + .|+++|
T Consensus 109 ~~~~~--------~gd~Vl~~~p~y~~~~~~~~~~g~-------------~~~~~~~~~~-~------------~d~~~l 154 (397)
T 2zyj_A 109 KVFLD--------EGSPVLLEAPSYMGAIQAFRLQGP-------------RFLTVPAGEE-G------------PDLDAL 154 (397)
T ss_dssp HHHCC--------TTCEEEEEESCCHHHHHHHHTTCC-------------EEEEEEEETT-E------------ECHHHH
T ss_pred HHhCC--------CCCEEEEeCCCcHHHHHHHHHcCC-------------EEEecCcCCC-C------------CCHHHH
Confidence 97732 457899999999998654433221 1223332110 0 267889
Q ss_pred HHHHHhCCCcEEEE-EEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccccc-ccccccCCC---cc-
Q psy8199 412 EILLKKNHNKIAAI-IIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKF-FACEHAEIW---PD- 485 (965)
Q Consensus 412 e~~l~~~~~~~aai-i~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~-~~~~~~~~~---pD- 485 (965)
++++++. ++++| ++.. ++|++|.+. +.+++++|.++|++||+++|+||+|++|++.|.. .....++.. ++
T Consensus 155 ~~~l~~~--~~~~v~~~~~-~~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~ 230 (397)
T 2zyj_A 155 EEVLKRE--RPRFLYLIPS-FQNPTGGLT-PLPARKRLLQMVMERGLVVVEDDAYRELYFGEARLPSLFELAREAGYPGV 230 (397)
T ss_dssp HHHHHHC--CCSCEEECCB-SCTTTCCBC-CHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSCCCCCHHHHHHHHTCCCE
T ss_pred HHHHhhc--CCeEEEECCC-CcCCCCCcC-CHHHHHHHHHHHHHcCCEEEEeCCcccccCCCCCCCchhhhCcccCCCeE
Confidence 9888752 34455 3444 588889765 7889999999999999999999999998776652 222223222 22
Q ss_pred --eeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh---cccHHHHHHHHHHH
Q psy8199 486 --FLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN---KDNILQRISQDMKK 560 (965)
Q Consensus 486 --ivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~---~~~~~~~~~~~~~~ 560 (965)
+.++||.+++| +++|++++++++++.+.. ..+..+++.|+++++++.++|+... -+...++++++.++
T Consensus 231 i~~~s~sK~~~~G-~r~G~~~~~~~~~~~l~~------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~ 303 (397)
T 2zyj_A 231 IYLGSFSKVLSPG-LRVAFAVAHPEALQKLVQ------AKQGADLHTPMLNQMLVHELLKEGFSERLERVRRVYREKAQA 303 (397)
T ss_dssp EEEEESTTTTCGG-GCCEEEECCHHHHHHHHH------HHHHHHSSCCHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH
T ss_pred EEEeccccccccc-ceeEEEecCHHHHHHHHH------HHHhhcCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 44789999966 799999999999888764 2334566779999999988886321 12234445556666
Q ss_pred HHHHHHcccCCC-ceeee-eceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec---------CCEEEEeCCccc
Q psy8199 561 ITKALTSLITHP-KIINF-RQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI---------GNTVYLMPPYIL 629 (965)
Q Consensus 561 l~~~L~~l~~~~-~i~~v-~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~---------~~~lR~~p~~~~ 629 (965)
+.+.|++. .| ++..+ +..|+++.+.+. ++ .....+.+.|.++||++.++ .+++|++++..
T Consensus 304 l~~~L~~~--~~~g~~~~~~~~g~~~~~~~~--~~----~~~~~~~~~l~~~gi~v~~g~~f~~~~~~~~~iRis~~~~- 374 (397)
T 2zyj_A 304 MLHALDRE--VPKEVRYTRPKGGMFVWMELP--KG----LSAEGLFRRALEENVAFVPGGPFFANGGGENTLRLSYATL- 374 (397)
T ss_dssp HHHHHHHH--SCTTSEECCCSBSSEEEEECS--TT----CCHHHHHHHHHHTTEEEEESGGGCTTSCCTTEEEEECSSS-
T ss_pred HHHHHHHH--CCCCeEEccCCccEEEEEEcC--CC----CCHHHHHHHHHHCCCEEechHHhcCCCCCCCeEEEEcCCC-
Confidence 66666542 23 34433 345777777764 11 11346788899999999872 36899998864
Q ss_pred CHHHHHHHHHhhhcccc
Q psy8199 630 NKNEIQHMTSAIFQTFN 646 (965)
Q Consensus 630 t~~~i~~~~~~l~~~~~ 646 (965)
++++++++++++.+.+.
T Consensus 375 ~~~~i~~~~~~l~~~l~ 391 (397)
T 2zyj_A 375 DREGIAEGVRRLGRALK 391 (397)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 89999999999887654
|
| >3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.93 E-value=6.3e-26 Score=259.06 Aligned_cols=335 Identities=10% Similarity=0.029 Sum_probs=232.3
Q ss_pred ccccccccchhccCCCCCHHHHHHHHHHHhhcc--ccccCCCCcHHHHHHHHHHHhhcCCCC---CeEEEcCChhHHHHH
Q psy8199 255 RYLDAISSWWVNLFGHSNSYINKALKNQLNKLE--HVMLSNLTHKPVIKLSEKLSSLTQYKL---GHCFYGSDGASAVEV 329 (965)
Q Consensus 255 ~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~--~~~~~~~~~~~~~~la~~l~~~~~~~~---~~v~~~~sGseA~~~ 329 (965)
++|||.+|... +++ .+|+|.+|+.++++... .+....+..+...++++.+++.++... +++++++||++|++.
T Consensus 40 ~~id~~~g~~~-~~~-~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~l~~~l~~~~g~~~~~~~~i~~~~g~~~a~~~ 117 (407)
T 3nra_A 40 RPVDFSHGDVD-AHE-PTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFL 117 (407)
T ss_dssp CCEETTSCCTT-TSC-CCTTHHHHHHHHHHHTHHHHSCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHH
T ss_pred ceeeecCcCCC-CCC-CcHHHHHHHHHHHhcCCCCCcCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHHH
Confidence 59999887543 444 68999999999987632 233344667888999999999886532 799999999999999
Q ss_pred HHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCC-----CCCCCCCCCChhHHH
Q psy8199 330 ALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTP-----DSRNINKGNSANEIA 404 (965)
Q Consensus 330 Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~ 404 (965)
+++.+. .++++|++.+++|+++.......+. .+..+|.. +....
T Consensus 118 ~~~~l~--------~~gd~vl~~~~~~~~~~~~~~~~g~-------------~~~~~~~~~~~~~~~~~~---------- 166 (407)
T 3nra_A 118 AVAATV--------ARGDKVAIVQPDYFANRKLVEFFEG-------------EMVPVQLDYVSADETRAG---------- 166 (407)
T ss_dssp HHHTTC--------CTTCEEEEEESCCTHHHHHHHHTTC-------------EEEEEEBCCCSSCCSSCC----------
T ss_pred HHHHhC--------CCCCEEEEcCCcccchHHHHHHcCC-------------EEEEeecccccccCcCCC----------
Confidence 998763 2568899999999987544333222 22333331 01111
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccc-cccccC--
Q psy8199 405 RCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFF-ACEHAE-- 481 (965)
Q Consensus 405 ~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~-~~~~~~-- 481 (965)
.|+++|++++.+ ++.+|++.. ++|++|.+. +.+++++|.++|++||+++|+||+|++|++.|..+ ....++
T Consensus 167 -~d~~~l~~~l~~---~~~~v~~~~-p~nptG~~~-~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~ 240 (407)
T 3nra_A 167 -LDLTGLEEAFKA---GARVFLFSN-PNNPAGVVY-SAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAV 240 (407)
T ss_dssp -BCHHHHHHHHHT---TCCEEEEES-SCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTSBCTTCCCCCGGGCTTS
T ss_pred -cCHHHHHHHHhh---CCcEEEEcC-CCCCCCccc-CHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCChhhcCcc
Confidence 268899999874 334444444 488899765 78889999999999999999999999987776532 333332
Q ss_pred ---CCcceeeeccccC-CCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc--ccHHHHHH
Q psy8199 482 ---IWPDFLCLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK--DNILQRIS 555 (965)
Q Consensus 482 ---~~pDivt~sK~l~-gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~--~~~~~~~~ 555 (965)
...++.+|||+++ .| +++|++++++++++.+.. ..+..+++.++++++++.++|+...+ ++..++.+
T Consensus 241 ~~~~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~l~~------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~ 313 (407)
T 3nra_A 241 DAENVVTIMGPSKTESLSG-YRLGVAFGSRAIIARMEK------LQAIVSLRAAGYSQAVLRGWFDEAPGWMEDRIARHQ 313 (407)
T ss_dssp CGGGEEEEECSSSTTCCGG-GCCEEEEECHHHHHHHHH------HHHHHTSSSCHHHHGGGGGTTCCCTTHHHHHHHHHH
T ss_pred cCCcEEEEeCcccccCCCe-eeEEEEEcCHHHHHHHHH------HHhhhccCCChHHHHHHHHHHhccchHHHHHHHHHH
Confidence 2234557899997 55 899999999999988765 34556778889999888887752111 22345555
Q ss_pred HHHHHHHHHHHcccCCCceeeeecee-EEEEEEEeecCccchhhHHHHHHHHHHH-cCcEEeec-------CCEEEEeCC
Q psy8199 556 QDMKKITKALTSLITHPKIINFRQKG-MIWAFDVIIEDPEQIETFSKKFFVAALK-NELLLRPI-------GNTVYLMPP 626 (965)
Q Consensus 556 ~~~~~l~~~L~~l~~~~~i~~v~g~G-~~~~i~~~~~~~~~~~~~~~~~~~~l~~-~Gi~~~~~-------~~~lR~~p~ 626 (965)
++.+++.+.|+++ +++..+.+.+ .++.+.+. ..+ .....+.+.|.+ +||++.++ .+++|++++
T Consensus 314 ~~~~~l~~~L~~~---~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~ 385 (407)
T 3nra_A 314 AIRDELLHVLRGC---EGVFARTPQAGSYLFPRLP-KLA----VAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFS 385 (407)
T ss_dssp HHHHHHHHHHHTS---TTCBCCCCSBSSEECCBCC-CBS----SCHHHHHHHHHHHHCEECEEGGGTCTTCTTBEEEECC
T ss_pred HHHHHHHHHHhcC---CCceeccCCeeEEEEEeCC-CCC----CCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEeC
Confidence 6666666666543 5565555554 66665553 111 113457777765 69999873 368999976
Q ss_pred cccCHHHHHHHHHhhhccc
Q psy8199 627 YILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 627 ~~~t~~~i~~~~~~l~~~~ 645 (965)
.++++++++++++.+++
T Consensus 386 --~~~~~i~~~~~~l~~~~ 402 (407)
T 3nra_A 386 --QDHEAAVAAARRIVTLV 402 (407)
T ss_dssp --SCHHHHHHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHHHHHH
Confidence 49999999999887654
|
| >2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.8e-25 Score=251.70 Aligned_cols=322 Identities=16% Similarity=0.091 Sum_probs=229.1
Q ss_pred CCcccccccccchhccCCCCCHHHHHHHHHHHhhc-cccccCCCCcHHHHHHHHHHHhhcC--CCCCeEEEcCChhHHHH
Q psy8199 252 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKL-EHVMLSNLTHKPVIKLSEKLSSLTQ--YKLGHCFYGSDGASAVE 328 (965)
Q Consensus 252 dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~-~~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~~~sGseA~~ 328 (965)
.|+.++||.++.. .+|+ +|++.+++.++++.. ..+....+..+....+++.+.+..+ .+.+++++++||++|++
T Consensus 27 ~g~~~i~l~~~~~--~~~~-~~~v~~a~~~~~~~~~~~y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~ 103 (370)
T 2z61_A 27 EGKKVIHLEIGEP--DFNT-PKPIVDEGIKSLKEGKTHYTDSRGILELREKISELYKDKYKADIIPDNIIITGGSSLGLF 103 (370)
T ss_dssp TTCCCEECCCCSC--SSCC-CHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHSSCCCCGGGEEEESSHHHHHH
T ss_pred cCCCEEEccCCCC--CCCC-CHHHHHHHHHHHHcCccCCCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEECCChHHHHH
Confidence 5889999988754 6786 899999999998763 2232223345666677777765443 35579999999999999
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHH
Q psy8199 329 VALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAI 408 (965)
Q Consensus 329 ~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 408 (965)
.+++.+. .++++|++.+++||++.......+. .+..+| .|+
T Consensus 104 ~~~~~~~--------~~gd~vl~~~p~~~~~~~~~~~~g~-------------~~~~v~------------------~d~ 144 (370)
T 2z61_A 104 FALSSII--------DDGDEVLIQNPCYPCYKNFIRFLGA-------------KPVFCD------------------FTV 144 (370)
T ss_dssp HHHHHHC--------CTTCEEEEESSCCTHHHHHHHHTTC-------------EEEEEC------------------SSH
T ss_pred HHHHHhc--------CCCCEEEEeCCCchhHHHHHHHcCC-------------EEEEeC------------------CCH
Confidence 9999873 2458899999999998544332221 223333 157
Q ss_pred HHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccccccccccc-CCC-cce
Q psy8199 409 FDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHA-EIW-PDF 486 (965)
Q Consensus 409 ~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~-~~~-pDi 486 (965)
++|+++++ +++++|++++ ++|++|.+.+ .+ |.++|++||+++|+||+|+++.+.|.......+ +.. .|+
T Consensus 145 ~~l~~~l~---~~~~~v~~~~-p~nptG~~~~----~~-l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i 215 (370)
T 2z61_A 145 ESLEEALS---DKTKAIIINS-PSNPLGEVID----RE-IYEFAYENIPYIISDEIYNGLVYEGKCYSAIEFDENLEKTI 215 (370)
T ss_dssp HHHHHHCC---SSEEEEEEES-SCTTTCCCCC----HH-HHHHHHHHCSEEEEECTTTTCBSSSCCCCGGGTCTTCSSEE
T ss_pred HHHHHhcc---cCceEEEEcC-CCCCcCcccC----HH-HHHHHHHcCCEEEEEcchhhcccCCCCcCHHHccCCCCcEE
Confidence 88888875 3567777776 7899998876 33 999999999999999999988666643333332 122 233
Q ss_pred --eeeccccC-CCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHH-Hhc--ccHHHHHHHHHHH
Q psy8199 487 --LCLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEI-FNK--DNILQRISQDMKK 560 (965)
Q Consensus 487 --vt~sK~l~-gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~-~~~--~~~~~~~~~~~~~ 560 (965)
.++||.++ .| +++|++++++++++.+.. ..+..+++.|+++++++.++|+. ..+ +...++++++.++
T Consensus 216 ~~~s~sK~~~~~G-~r~G~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~ 288 (370)
T 2z61_A 216 LINGFSKLYAMTG-WRIGYVISNDEIIEAILK------LQQNLFISAPTISQYAALKAFEKETEREINSMIKEFDRRRRL 288 (370)
T ss_dssp EEEESTTTTTCGG-GCCEEEECCHHHHHHHHH------HHHHHTSSSCHHHHHHHGGGGSHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecChhccCCcc-ceEEEEEECHHHHHHHHH------HHhhcccCCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Confidence 47899997 55 799999999999888765 33456778899999999998865 221 3456777788888
Q ss_pred HHHHHHcccCCCceeeeece-eEEEEEEEeecCccchhhHHHHHHHHHH-HcCcEEeec-------CCEEEEeCCcccCH
Q psy8199 561 ITKALTSLITHPKIINFRQK-GMIWAFDVIIEDPEQIETFSKKFFVAAL-KNELLLRPI-------GNTVYLMPPYILNK 631 (965)
Q Consensus 561 l~~~L~~l~~~~~i~~v~g~-G~~~~i~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~-------~~~lR~~p~~~~t~ 631 (965)
+.+.|+++ ++..+.+. |.++.+.+. + ....+.+.|. ++||.+.++ .+++|++++ .++
T Consensus 289 l~~~L~~~----g~~~~~~~~~~~~~~~~~--~------~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~Ri~~~--~~~ 354 (370)
T 2z61_A 289 VLKYVKDF----GWEVNNPIGAYYVFPNIG--E------DGREFAYKLLKEKFVALTPGIGFGSKGKNYIRISYA--NSY 354 (370)
T ss_dssp HHHHHHHT----TCBCCCCCBTTEECCBCS--S------CHHHHHHHHHHHHCEECEEGGGGCGGGSSBEEEECC--SCH
T ss_pred HHHHHHHc----CCeecCCCcceEEEEecC--C------CHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEe--CCH
Confidence 88888765 23333344 445555543 1 1346777887 789999874 468999977 699
Q ss_pred HHHHHHHHhhhccc
Q psy8199 632 NEIQHMTSAIFQTF 645 (965)
Q Consensus 632 ~~i~~~~~~l~~~~ 645 (965)
++++++++++.+.+
T Consensus 355 ~~i~~~~~~l~~~l 368 (370)
T 2z61_A 355 ENIKEGLERIKEFL 368 (370)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998886543
|
| >3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.1e-25 Score=256.09 Aligned_cols=345 Identities=12% Similarity=0.047 Sum_probs=234.7
Q ss_pred EecCCcccccccccchhc-cCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcC-----CCCCeEEEcCC
Q psy8199 249 ITFSGKRYLDAISSWWVN-LFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQ-----YKLGHCFYGSD 322 (965)
Q Consensus 249 ~d~dG~~ylD~~~~~~~~-~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~-----~~~~~v~~~~s 322 (965)
.+.+|+.+||+..|.... +-...+|+|.+|+.++++..... ...+.....++.+.++++++ ...+++++++|
T Consensus 49 ~~~~~~~~i~l~~g~~~~~g~~~~~~~v~~a~~~~~~~~~~~--~y~~~~g~~~lr~~la~~~~~~~~~~~~~~v~~t~g 126 (427)
T 3dyd_A 49 KPNPNKTMISLSIGDPTVFGNLPTDPEVTQAMKDALDSGKYN--GYAPSIGFLSSREEIASYYHCPEAPLEAKDVILTSG 126 (427)
T ss_dssp CCCTTSCCEECCCSCTTTTSSSCCCHHHHHHHHHHHHHCCSS--SCCCTTCCHHHHHHHHHHHCBTTBCCCGGGEEEESS
T ss_pred cccCCCCEEeCCCcCCCccCCCCCCHHHHHHHHHHHhcCcCC--CCCCCCCcHHHHHHHHHHHhhcCCCCChHHEEEecC
Confidence 345688999999886422 12346899999999998763211 11122334455566666554 35679999999
Q ss_pred hhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCC-CCCCCCCCChh
Q psy8199 323 GASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPD-SRNINKGNSAN 401 (965)
Q Consensus 323 GseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 401 (965)
|++|++.+++.+.. ++++|++.+++|+++.......+. .+..+|... ....
T Consensus 127 ~t~al~~~~~~l~~--------~gd~vl~~~p~~~~~~~~~~~~g~-------------~~~~~~~~~~~~~~------- 178 (427)
T 3dyd_A 127 CSQAIDLCLAVLAN--------PGQNILVPRPGFSLYKTLAESMGI-------------EVKLYNLLPEKSWE------- 178 (427)
T ss_dssp HHHHHHHHHHHHCC--------TTCEEEEEESCCTHHHHHHHHTTC-------------EEEEEEEEGGGTTE-------
T ss_pred cHHHHHHHHHHhcC--------CCCEEEEcCCCchhHHHHHHHcCC-------------EEEEEecccccCCC-------
Confidence 99999999998742 568899999999988544433332 222333211 0000
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccccc-cccccc
Q psy8199 402 EIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKF-FACEHA 480 (965)
Q Consensus 402 ~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~-~~~~~~ 480 (965)
.|+++|++++++ ++.+|++.. ++|++|.+. +++.+++|.++|++||+++|+||+|++|++.|.. .....+
T Consensus 179 ----~d~~~l~~~l~~---~~~~v~i~~-p~nptG~~~-~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~~~~~~~~~ 249 (427)
T 3dyd_A 179 ----IDLKQLEYLIDE---KTACLIVNN-PSNPCGSVF-SKRHLQKILAVAARQCVPILADEIYGDMVFSDCKYEPLATL 249 (427)
T ss_dssp ----ECHHHHHSSCCT---TEEEEEEES-SCTTTCCCC-CHHHHHHHHHHHHHTTCCEEEECTTTTCBCSSCCCCCGGGG
T ss_pred ----CCHHHHHHHhcc---CCCEEEEEC-CCCCCCCCC-CHHHHHHHHHHHHHCCCEEEEEcCchhhccCCCcCccHHHh
Confidence 267888877742 355555555 588999765 7888999999999999999999999999887753 345555
Q ss_pred CCCccee---eeccccCCCcccceeeeec-------HHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc---
Q psy8199 481 EIWPDFL---CLSKGITGGYLPLSLVMTT-------DKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK--- 547 (965)
Q Consensus 481 ~~~pDiv---t~sK~l~gG~~pig~v~~~-------~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~--- 547 (965)
+..++++ +|||.++.+++|+|+++++ +++++.+.. ....+++.++++++++.++|+....
T Consensus 250 ~~~~~vi~~~S~sK~~~~~G~riG~~~~~~~~~~~~~~i~~~l~~-------~~~~~~~~~~~~~~a~~~~L~~~~~~~~ 322 (427)
T 3dyd_A 250 STDVPILSCGGLAKRWLVPGWRLGWILIHDRRDIFGNEIRDGLVK-------LSQRILGPCTIVQGALKSILCRTPGEFY 322 (427)
T ss_dssp CSSCCEEEEEESTTTSSCGGGCCEEEEEECSTTSSHHHHHHHHHH-------HHHHHCCSCHHHHHHHHHHHHHSCHHHH
T ss_pred CCCCcEEEEeeccccCCCcCcceEEEEecCcchhhHHHHHHHHHH-------HHhccCCCCHHHHHHHHHHHHhcCHHHH
Confidence 6666676 7899865533899999987 467766654 1224678899999999999985322
Q ss_pred ccHHHHHHHHHHHHHHHHHcccCCCceeeeece-eEEEEEEEeecCccchhhHHHHHHHHHH-HcCcEEeec-----CCE
Q psy8199 548 DNILQRISQDMKKITKALTSLITHPKIINFRQK-GMIWAFDVIIEDPEQIETFSKKFFVAAL-KNELLLRPI-----GNT 620 (965)
Q Consensus 548 ~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~-G~~~~i~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~-----~~~ 620 (965)
++..++++++.+++.+.|+++ |++..+.+. |+++.+.+. ....+.......+.+.|+ ++||++.|+ .++
T Consensus 323 ~~~~~~~~~~~~~l~~~L~~~---~g~~~~~p~~g~~~~~~l~-~~~~~~~~~~~~~~~~l~~~~gV~v~~g~~~~~~~~ 398 (427)
T 3dyd_A 323 HNTLSFLKSNADLCYGALAAI---PGLRPVRPSGAMYLMVGIE-MEHFPEFENDVEFTERLVAEQSVHCLPATCFEYPNF 398 (427)
T ss_dssp HHHHHHHHHHHHHHHHHHHHS---TTEEEECCSBTTEEEEEEC-GGGCTTCSSHHHHHHHHHHHHCEECEEGGGGTCTTE
T ss_pred HHHHHHHHHHHHHHHHHHhcC---CCceecCCCeeEEEEEecC-HhhcCCCCCHHHHHHHHHHHCCEEEECCcccCCCCe
Confidence 234566666777777777654 677655454 556655653 110000011345666765 899999885 379
Q ss_pred EEEeCCcccCHHHHHHHHHhhhccc
Q psy8199 621 VYLMPPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 621 lR~~p~~~~t~~~i~~~~~~l~~~~ 645 (965)
+|++ +..++++++++++++.+.+
T Consensus 399 iRis--~~~~~e~i~~~l~~l~~~l 421 (427)
T 3dyd_A 399 IRVV--ITVPEVMMLEACSRIQEFC 421 (427)
T ss_dssp EEEE--SCSCHHHHHHHHHHHHHHH
T ss_pred EEEE--ECCCHHHHHHHHHHHHHHH
Confidence 9999 5589999999999887654
|
| >1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=3.7e-25 Score=250.92 Aligned_cols=332 Identities=14% Similarity=0.109 Sum_probs=233.3
Q ss_pred CCcccccccccchhccCCCCCHHHHHHHHHHHhhcc-ccccCCCCcHHHHHHHHHHHhhcCC--CCCeEEEcCChhHHHH
Q psy8199 252 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLE-HVMLSNLTHKPVIKLSEKLSSLTQY--KLGHCFYGSDGASAVE 328 (965)
Q Consensus 252 dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~-~~~~~~~~~~~~~~la~~l~~~~~~--~~~~v~~~~sGseA~~ 328 (965)
.|+.++|+.++.+ .+|+ +|.+.+++.++++... .+....+..+....+++.+.+..+. +.+++++++||++|++
T Consensus 39 ~g~~~i~l~~~~~--~~~~-~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~v~~~~g~t~al~ 115 (389)
T 1o4s_A 39 KGEDVINLTAGEP--DFPT-PEPVVEEAVRFLQKGEVKYTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALF 115 (389)
T ss_dssp TTCCCEECCCSSC--SSCC-CHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHH
T ss_pred cCCCEEEccCCCC--CCCC-CHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEEecCHHHHHH
Confidence 5889999988754 5775 8999999999987632 2222223455666677666655443 4579999999999999
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCC-CCCCCCCChhHHHHHH
Q psy8199 329 VALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDS-RNINKGNSANEIARCA 407 (965)
Q Consensus 329 ~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d 407 (965)
.+++.+. .++++|++.+++||++.......+. .+..+|.... ... .|
T Consensus 116 ~~~~~l~--------~~gd~Vl~~~~~~~~~~~~~~~~g~-------------~~~~v~~~~~~~~~-----------~d 163 (389)
T 1o4s_A 116 NAFMALL--------DPGDEVIVFSPVWVSYIPQIILAGG-------------TVNVVETFMSKNFQ-----------PS 163 (389)
T ss_dssp HHHHHHC--------CTTCEEEEEESCCTTHHHHHHHTTC-------------EEEEEECCGGGTTC-----------CC
T ss_pred HHHHHhC--------CCCCEEEEcCCCchhHHHHHHHcCC-------------EEEEEecCCccCCC-----------CC
Confidence 9999773 2568899999999997543322221 2334443210 011 26
Q ss_pred HHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccC--CCcc
Q psy8199 408 IFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAE--IWPD 485 (965)
Q Consensus 408 ~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~--~~pD 485 (965)
+++|+++++ +++++|++++ ++|++|.+. +.+++++|.++|++||+++|+||+|+++.+.|.......+. -..|
T Consensus 164 ~~~l~~~l~---~~~~~v~~~~-p~nptG~~~-~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~ 238 (389)
T 1o4s_A 164 LEEVEGLLV---GKTKAVLINS-PNNPTGVVY-RREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRI 238 (389)
T ss_dssp HHHHHHTCC---TTEEEEEEES-SCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTE
T ss_pred HHHHHHhcc---cCceEEEEcC-CCCCCCCCC-CHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCHhhcCCCCCcE
Confidence 788888774 3567777777 788899765 78899999999999999999999999886655422222221 1234
Q ss_pred e--eeeccccC-CCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Q psy8199 486 F--LCLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKIT 562 (965)
Q Consensus 486 i--vt~sK~l~-gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~ 562 (965)
+ .++||.++ .| +++|++++++++++.+.. ....++++.++++++++.++|+.. .+.+.++++++.+++.
T Consensus 239 i~~~s~sK~~~~~G-~r~G~l~~~~~~~~~l~~------~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~l~ 310 (389)
T 1o4s_A 239 VYINGFSKSHSMTG-WRVGYLISSEKVATAVSK------IQSHTTSCINTVAQYAALKALEVD-NSYMVQTFKERKNFVV 310 (389)
T ss_dssp EEEEESTTTTTCGG-GCCEEEECCHHHHHHHHH------HHHHHTCSCCHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHH
T ss_pred EEEeechhhcCCcc-cceEEEEeCHHHHHHHHH------HhhhcccCCCHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHH
Confidence 3 47899997 45 799999999999887765 234567888999999988887532 3456788888888998
Q ss_pred HHHHcccCCCceeeeece-eEEEEEEEeecCccchhhHHHHHHHHHH-HcCcEEeec-----CCEEEEeCCcccCHHHHH
Q psy8199 563 KALTSLITHPKIINFRQK-GMIWAFDVIIEDPEQIETFSKKFFVAAL-KNELLLRPI-----GNTVYLMPPYILNKNEIQ 635 (965)
Q Consensus 563 ~~L~~l~~~~~i~~v~g~-G~~~~i~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~-----~~~lR~~p~~~~t~~~i~ 635 (965)
+.|+++ ++..+.+. |.++.+.+. .+ ...+.+.|. ++||++.|+ .+++|++++ .++++++
T Consensus 311 ~~L~~~----g~~~~~~~~~~~~~~~~~-~~-------~~~l~~~l~~~~gi~v~~g~~f~~~~~~Ris~~--~~~~~l~ 376 (389)
T 1o4s_A 311 ERLKKM----GVKFVEPEGAFYLFFKVR-GD-------DVKFCERLLEEKKVALVPGSAFLKPGFVRLSFA--TSIERLT 376 (389)
T ss_dssp HHHHHT----TCCCCCCSBSSEEEEECS-SC-------HHHHHHHHHHHHCEECEEGGGGTCTTEEEEECC--SCHHHHH
T ss_pred HHHHhc----CCeeecCCcceEEEEeCC-CC-------HHHHHHHHHHHCCEEEeCchhcCCCCeEEEEEe--CCHHHHH
Confidence 888775 23223333 445555542 11 346778887 899999875 269999977 4899999
Q ss_pred HHHHhhhccc
Q psy8199 636 HMTSAIFQTF 645 (965)
Q Consensus 636 ~~~~~l~~~~ 645 (965)
++++++.+.+
T Consensus 377 ~~l~~l~~~l 386 (389)
T 1o4s_A 377 EALDRIEDFL 386 (389)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998886543
|
| >3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.7e-25 Score=254.00 Aligned_cols=335 Identities=13% Similarity=0.059 Sum_probs=224.8
Q ss_pred ecCCcccccccccchhccCCCCCHHHHHHHHHHHhhc-cccccCCCCcHHHHHHHHHHHhhcC--CCCCeEEEcCChhHH
Q psy8199 250 TFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKL-EHVMLSNLTHKPVIKLSEKLSSLTQ--YKLGHCFYGSDGASA 326 (965)
Q Consensus 250 d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~-~~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~~~sGseA 326 (965)
..+|++||||.+|.. .++. +|+|.+|+.++++.. ..+....+..+.+..+++.+.+..+ .+.++|++++||++|
T Consensus 27 ~~~g~~~i~l~~g~~--~~~~-~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~v~~t~g~~~a 103 (391)
T 3h14_A 27 EEAGRRIIHMEVGQP--GTGA-PRGAVEALAKSLETDALGYTVALGLPALRQRIARLYGEWYGVDLDPGRVVITPGSSGG 103 (391)
T ss_dssp HHTTCCCEECCCSSC--SSCS-CHHHHHHHHHHHC----------CCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHH
T ss_pred HhcCCCeEEccCCCC--CCCC-CHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHEEEecChHHH
Confidence 468999999998864 4553 899999999988753 2222223345666777777766544 356799999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHH
Q psy8199 327 VEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARC 406 (965)
Q Consensus 327 ~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (965)
++.+++.+.. ++++|++.+++|+++.......+. .+..+|........ .
T Consensus 104 l~~~~~~l~~--------~gd~vl~~~p~~~~~~~~~~~~g~-------------~~~~v~~~~~~~~~----------~ 152 (391)
T 3h14_A 104 FLLAFTALFD--------SGDRVGIGAPGYPSYRQILRALGL-------------VPVDLPTAPENRLQ----------P 152 (391)
T ss_dssp HHHHHHHHCC--------TTCEEEEEESCCHHHHHHHHHTTC-------------EEEEEECCGGGTTS----------C
T ss_pred HHHHHHHhcC--------CCCEEEEcCCCCccHHHHHHHcCC-------------EEEEeecCcccCCC----------C
Confidence 9999987742 568899999999987543332221 23344432111000 1
Q ss_pred HHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcce
Q psy8199 407 AIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDF 486 (965)
Q Consensus 407 d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDi 486 (965)
|+++|+++ ++.+|+++. ++|++|.+. +.+.+++|.++|++||+++|+||+|++|++.|.......+ .+++
T Consensus 153 d~~~l~~~------~~~~v~i~~-p~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~--~~~~ 222 (391)
T 3h14_A 153 VPADFAGL------DLAGLMVAS-PANPTGTML-DHAAMGALIEAAQAQGASFISDEIYHGIEYEAKAVTALEL--TDEC 222 (391)
T ss_dssp CHHHHTTS------CCSEEEEES-SCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGT--CSSS
T ss_pred CHHHHHhc------CCeEEEECC-CCCCCCccC-CHHHHHHHHHHHHHcCCEEEEECcchhcccCCCCcChhhc--CCCE
Confidence 56666543 345556656 689999876 6777999999999999999999999998776653222222 3444
Q ss_pred e---eeccccC-CCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh-cccHHHHHHHHHHHH
Q psy8199 487 L---CLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN-KDNILQRISQDMKKI 561 (965)
Q Consensus 487 v---t~sK~l~-gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~-~~~~~~~~~~~~~~l 561 (965)
+ ++||.++ .| +++|++++++++++.+.. .....+++.++++++++.++|+..+ -+...++++++.+++
T Consensus 223 i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l 295 (391)
T 3h14_A 223 YVINSFSKYFSMTG-WRVGWMVVPEDQVRVVER------IAQNMFICAPHASQVAALAALDCDAELQANLDVYKANRKLM 295 (391)
T ss_dssp EEEEESSSTTCCTT-SCCEEEECCGGGHHHHHH------HHHHTTCCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEechhccCCcc-ceeEEEEeCHHHHHHHHH------HHhhhccCCCHHHHHHHHHHhCChHHHHHHHHHHHHHHHHH
Confidence 4 7899997 56 899999999999888765 3455678899999999999886111 022445566666666
Q ss_pred HHHHHcccCCCceeeeecee-EEEEEEEeecCccchhhHHHHHHHHHHHc-CcEEeec--------CCEEEEeCCcccCH
Q psy8199 562 TKALTSLITHPKIINFRQKG-MIWAFDVIIEDPEQIETFSKKFFVAALKN-ELLLRPI--------GNTVYLMPPYILNK 631 (965)
Q Consensus 562 ~~~L~~l~~~~~i~~v~g~G-~~~~i~~~~~~~~~~~~~~~~~~~~l~~~-Gi~~~~~--------~~~lR~~p~~~~t~ 631 (965)
.+.|+++ +....+++.| .++.+.+. ..+ .....+.+.|+++ ||++.|+ .+++|++++. ++
T Consensus 296 ~~~l~~~---~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~iRis~~~--~~ 365 (391)
T 3h14_A 296 LERLPKA---GFTRIAPPDGAFYVYADVS-DLT----DDSRAFAAEILEKAGVAVTPGLDFDPERGAGTLRFSYAR--AT 365 (391)
T ss_dssp HHHHHHH---TCCCBCCCCBTTEEEEECT-TTC----SCHHHHHHHHHHHHCEECEEGGGTCTTTGGGEEEEECCS--CH
T ss_pred HHHHHHc---CCCcccCCCeeEEEEEecC-ccC----CCHHHHHHHHHHHCCEEEcCchhhCCCCCCCeEEEEecC--CH
Confidence 6666654 2222345555 45555553 111 1134577777765 9999873 2589999765 88
Q ss_pred HHHHHHHHhhhccc
Q psy8199 632 NEIQHMTSAIFQTF 645 (965)
Q Consensus 632 ~~i~~~~~~l~~~~ 645 (965)
++++++++++.+..
T Consensus 366 ~~i~~~l~~l~~~~ 379 (391)
T 3h14_A 366 ADIEEGLDRLEAFM 379 (391)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998887544
|
| >3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=5.2e-25 Score=253.69 Aligned_cols=351 Identities=13% Similarity=0.027 Sum_probs=233.1
Q ss_pred EEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccc-------------cccCCCCcHHHHHHHHHHHhhcC---
Q psy8199 248 LITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEH-------------VMLSNLTHKPVIKLSEKLSSLTQ--- 311 (965)
Q Consensus 248 ~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~-------------~~~~~~~~~~~~~la~~l~~~~~--- 311 (965)
.||.++|.+.++..|...++++ +|.+.+++.++.....+ |....+..+....+++.+.+..+
T Consensus 30 ~y~~~~~p~~~i~lg~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~ 107 (435)
T 3piu_A 30 PYHEVHNTNGIIQMGLAENQLC--FDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKV 107 (435)
T ss_dssp BCBTTTBTTSBEECSSCCCCSS--HHHHHHHHHHCTTGGGTEETTEECHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTSS
T ss_pred CCCcccCCCCeEEecccccccc--HHHHHHHHHhCccccccccccccccccccccCCCCCcHHHHHHHHHHHHHhhCCCC
Confidence 4889999988887777777776 68888888876553321 22122233444455555443321
Q ss_pred -CCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCC
Q psy8199 312 -YKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPD 390 (965)
Q Consensus 312 -~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (965)
...+++++++||++|++.++++++. +++.|++.+++|++.........|. .+..++...
T Consensus 108 ~~~~~~v~~~~gg~~a~~~~~~~l~~--------~gd~vl~~~p~~~~~~~~~~~~~g~------------~~~~~~~~~ 167 (435)
T 3piu_A 108 TFDPNHLVLTAGATSANETFIFCLAD--------PGEAVLIPTPYYPGFDRDLKWRTGV------------EIVPIHCTS 167 (435)
T ss_dssp CCCGGGEEEEEHHHHHHHHHHHHHCC--------TTCEEEEEESCCTTHHHHTTTTTCC------------EEEEEECCG
T ss_pred CCCHHHEEEcCChHHHHHHHHHHhcC--------CCCeEEECCCccccHHHHHHHhcCC------------EEEEeeCCC
Confidence 3467999999999999999998743 5688999999998875433312221 223333321
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhC---CCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccC
Q psy8199 391 SRNINKGNSANEIARCAIFDLEILLKKN---HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVG 467 (965)
Q Consensus 391 ~~~~~~~~~~~~~~~~d~~~le~~l~~~---~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg 467 (965)
..... .|+++|++++++. ..++++|++++ ++|++|.+. +.+.+++|.++|++||+++|+||+|++
T Consensus 168 ~~~~~----------~d~~~l~~~l~~~~~~~~~~~~v~i~~-p~nptG~~~-~~~~l~~l~~~~~~~~~~li~Dea~~~ 235 (435)
T 3piu_A 168 SNGFQ----------ITETALEEAYQEAEKRNLRVKGVLVTN-PSNPLGTTM-TRNELYLLLSFVEDKGIHLISDEIYSG 235 (435)
T ss_dssp GGTSC----------CCHHHHHHHHHHHHHTTCCEEEEEEES-SCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTGG
T ss_pred ccCCc----------CCHHHHHHHHHHHHhcCCCeEEEEEcC-CCCCCCCCC-CHHHHHHHHHHHHHcCCEEEEeccccc
Confidence 10000 2678888888652 34677787777 689999765 677799999999999999999999998
Q ss_pred CCccccccc-ccccCCC---------cc----eeeeccccC-CCcccceeeee-cHHHHHhhhccCCcccccccCCCCCC
Q psy8199 468 CGRTGKFFA-CEHAEIW---------PD----FLCLSKGIT-GGYLPLSLVMT-TDKIYNSIYYKNNINIFLHSHSYSGN 531 (965)
Q Consensus 468 ~gr~G~~~~-~~~~~~~---------pD----ivt~sK~l~-gG~~pig~v~~-~~~i~~~~~~~~~~~~~~~~~t~~~~ 531 (965)
+++.|..+. ....... +| +.+|||+++ +| +|+|++++ ++++.+.+.. +..++..+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~i~i~s~sK~~g~~G-~r~G~~~~~~~~~~~~~~~--------~~~~~~~~ 306 (435)
T 3piu_A 236 TAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPG-FRVGAIYSNDDMVVAAATK--------MSSFGLVS 306 (435)
T ss_dssp GCCSSSCCCCHHHHHHC-------CGGGGEEEEEESSSSSCCGG-GCEEEEEESCHHHHHHHHH--------HGGGSCCC
T ss_pred cccCCCCCcCHHHhccccccccccCCCCCEEEEEeeecccCCCc-eeEEEEEeCCHHHHHHHHH--------HhhcCCCC
Confidence 777665332 2111111 44 457999997 56 89999999 5677776654 23455678
Q ss_pred HHHHHHHHHHHHHHh--c---ccHHHHHHHHHHHHHHHHHcccCCCceeeeecee-EEEEEEEeecCccchhhHHHHHHH
Q psy8199 532 PLACCAALATLEIFN--K---DNILQRISQDMKKITKALTSLITHPKIINFRQKG-MIWAFDVIIEDPEQIETFSKKFFV 605 (965)
Q Consensus 532 ~~~~aaa~a~L~~~~--~---~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~G-~~~~i~~~~~~~~~~~~~~~~~~~ 605 (965)
+++++++.++|+... + +...++++++.+++.+.|+++ ++..+.+.| +++++.+..............+.+
T Consensus 307 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~ 382 (435)
T 3piu_A 307 SQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKS----GISCLNGNAGLFCWVDMRHLLRSNTFEAEMELWK 382 (435)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----TCEECCCCSSSEEEEECGGGSSSSSHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCcccCCCeeEEEEEEcccccccCCchhHHHHHH
Confidence 999998888886322 1 234555666667777777654 455556665 777777741000000112346777
Q ss_pred HHHHc-CcEEeec-------CCEEEEeCCcccCHHHHHHHHHhhhcccc
Q psy8199 606 AALKN-ELLLRPI-------GNTVYLMPPYILNKNEIQHMTSAIFQTFN 646 (965)
Q Consensus 606 ~l~~~-Gi~~~~~-------~~~lR~~p~~~~t~~~i~~~~~~l~~~~~ 646 (965)
.|+++ ||++.|+ .+++||+++.. ++++++++++++.+++.
T Consensus 383 ~l~~~~gi~v~~g~~~~~~~~~~iRi~~~~~-~~e~i~~~l~~l~~~l~ 430 (435)
T 3piu_A 383 KIVYEVHLNISPGSSCHCTEPGWFRVCFANL-PERTLDLAMQRLKAFVG 430 (435)
T ss_dssp HHHHTSCEECEEGGGGTCSSTTEEEEECSSS-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCEEEeCCcccCCCCCCEEEEEeeCC-CHHHHHHHHHHHHHHHH
Confidence 88776 9999873 36899998655 99999999999876553
|
| >3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=5.8e-28 Score=274.38 Aligned_cols=345 Identities=11% Similarity=0.091 Sum_probs=231.2
Q ss_pred eEEEecCCc--ccccccccchhccCCCCCHHHHHHHHHHHhhc-cccccCCCCcHHHHHHHHHHHhhcC--CCCCeEEEc
Q psy8199 246 SKLITFSGK--RYLDAISSWWVNLFGHSNSYINKALKNQLNKL-EHVMLSNLTHKPVIKLSEKLSSLTQ--YKLGHCFYG 320 (965)
Q Consensus 246 ~~~~d~dG~--~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~-~~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~~ 320 (965)
+|+||.+|+ .++||..+.. .++ .+|++.+|+.+++... ..+.. ...+....+++.+.+..+ .+.++|+++
T Consensus 21 ~~~~d~~g~~~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~y~~--~~~~l~~~la~~l~~~~g~~~~~~~v~~~ 95 (392)
T 3b1d_A 21 TYKWKETETDPQLLPAWIADM--DFE-VMPEVKQAIHDYAEQLVYGYTY--ASDELLQAVLDWEKSEHQYSFDKEDIVFV 95 (392)
Confidence 899999999 9999987743 455 5899999999988653 22221 144555666666665554 356799999
Q ss_pred CChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCCh
Q psy8199 321 SDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSA 400 (965)
Q Consensus 321 ~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (965)
+||++|++.+++++.. ++++|++.+++||++...+...+. .+..+|.....+
T Consensus 96 ~g~~~a~~~~~~~~~~--------~gd~vl~~~p~~~~~~~~~~~~g~-------------~~~~~~~~~~~g------- 147 (392)
T 3b1d_A 96 EGVVPAISIAIQAFTK--------EGEAVLINSPVYPPFARSVRLNNR-------------KLVSNSLKEENG------- 147 (392)
Confidence 9999999999998743 567899999999998654433322 122222210000
Q ss_pred hHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccc----ccc
Q psy8199 401 NEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK----FFA 476 (965)
Q Consensus 401 ~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~----~~~ 476 (965)
.+ ..|+++|++++++ .++++|+++. ++|++|.+. +.+++++|.++|++||+++|+||+|++|++.|. .+.
T Consensus 148 -~~-~~d~~~l~~~l~~--~~~~~v~~~~-~~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~ 221 (392)
T 3b1d_A 148 -LF-QIDFEQLENDIVE--NDVKLYLLCN-PHNPGGRVW-EREVLEQIGHLCQKHHVILVSDEIHQDLTLFGHEHVSFNT 221 (392)
Confidence 00 0367888888752 2455666666 688899764 677899999999999999999999999977663 222
Q ss_pred ccc--cCCCcceeeeccccC-CCcccceeeeecH-HHHHhhhccCCcccccccCCC-CCCHHHHHHHHHHHHHHhc--cc
Q psy8199 477 CEH--AEIWPDFLCLSKGIT-GGYLPLSLVMTTD-KIYNSIYYKNNINIFLHSHSY-SGNPLACCAALATLEIFNK--DN 549 (965)
Q Consensus 477 ~~~--~~~~pDivt~sK~l~-gG~~pig~v~~~~-~i~~~~~~~~~~~~~~~~~t~-~~~~~~~aaa~a~L~~~~~--~~ 549 (965)
+.. .+..+++.+|||+++ +| +|+|++++++ ++++.+.. .....++ +.|+++++++.++|+...+ +.
T Consensus 222 ~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~ 294 (392)
T 3b1d_A 222 VSPDFKDFALVLSSATKTFNIAG-TKNSYAIIENPTLCAQFKH------QQLVNNHHEVSSLGYIATETAYRYGKPWLVA 294 (392)
Confidence 222 344566778999997 56 7999999875 48877764 1223333 4689999999999874211 12
Q ss_pred HHHHHHHHHHHHHHHHHcccCCCceeeeeceeEEEE-EEEeecCccchhhHHHHHHHHHH-HcCcEEeec-------CCE
Q psy8199 550 ILQRISQDMKKITKALTSLITHPKIINFRQKGMIWA-FDVIIEDPEQIETFSKKFFVAAL-KNELLLRPI-------GNT 620 (965)
Q Consensus 550 ~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~G~~~~-i~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~-------~~~ 620 (965)
..++++++.+++.+.|++ ..|++..+++.|.|+. +++. ..+ .....+.+.|+ ++||++.|+ .++
T Consensus 295 ~~~~~~~~~~~l~~~l~~--~~~~~~~~~~~~~~~~~i~~~-~~~----~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~ 367 (392)
T 3b1d_A 295 LKAVLEENIQFAVEYFAQ--EAPRLKVMKPQGTYLIWLDFS-DYG----LTDDALFTLLHDQAKVILNRGSDYGSEGELH 367 (392)
Confidence 333344444444444433 1456666778888775 5654 110 11335777786 789999873 257
Q ss_pred EEEeCCcccCHHHHHHHHHhhhccc
Q psy8199 621 VYLMPPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 621 lR~~p~~~~t~~~i~~~~~~l~~~~ 645 (965)
+|++ +..++++++++++++.+++
T Consensus 368 iRi~--~~~~~e~i~~~l~~l~~~l 390 (392)
T 3b1d_A 368 ARLN--IAAPKSLVEEICKRIVCCL 390 (392)
Confidence 9999 4557888998888876543
|
| >1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.8e-24 Score=245.09 Aligned_cols=333 Identities=11% Similarity=0.063 Sum_probs=231.2
Q ss_pred cccccccccchhccCCCCCHHHHHHHHHHHhhc-cccccCCCCcHHHHHHHHHHHhhcC--CCCC-eEEEcCChhHHHHH
Q psy8199 254 KRYLDAISSWWVNLFGHSNSYINKALKNQLNKL-EHVMLSNLTHKPVIKLSEKLSSLTQ--YKLG-HCFYGSDGASAVEV 329 (965)
Q Consensus 254 ~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~-~~~~~~~~~~~~~~~la~~l~~~~~--~~~~-~v~~~~sGseA~~~ 329 (965)
..++||.++.. .+| .+|++.+++.++++.. ..+....+..+....+++.+.+.++ .+.+ ++++++||++|++.
T Consensus 30 ~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~ 106 (386)
T 1u08_A 30 HQAINLSQGFP--DFD-GPRYLQERLAHHVAQGANQYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALYA 106 (386)
T ss_dssp TTCEECCCSSC--SSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHH
T ss_pred CCeEEecCCCC--CCC-CCHHHHHHHHHHHHhhccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEcCChHHHHHH
Confidence 36899988754 466 6899999999998762 2333223355666777777766555 3466 99999999999999
Q ss_pred HHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHH
Q psy8199 330 ALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIF 409 (965)
Q Consensus 330 Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 409 (965)
+++.+. .++++|++.+++||++.......+ ..+..+|.....+. .|++
T Consensus 107 ~~~~~~--------~~gd~vl~~~p~~~~~~~~~~~~g-------------~~~~~v~~~~~~~~-----------~d~~ 154 (386)
T 1u08_A 107 AITALV--------RNGDEVICFDPSYDSYAPAIALSG-------------GIVKRMALQPPHFR-----------VDWQ 154 (386)
T ss_dssp HHHHHC--------CTTCEEEEEESCCTTHHHHHHHTT-------------CEEEEEECCTTTCC-----------CCHH
T ss_pred HHHHhC--------CCCCEEEEeCCCchhHHHHHHHcC-------------CEEEEeecCcccCc-----------CCHH
Confidence 999773 246889999999998754322221 12334443221111 2678
Q ss_pred HHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccccc----cccc-ccCCCc
Q psy8199 410 DLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKF----FACE-HAEIWP 484 (965)
Q Consensus 410 ~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~----~~~~-~~~~~p 484 (965)
+|++++. +++++|+++. ++|++|.+. +.+++++|.++|++||+++|+||+|++|.+.|.. .... ..+...
T Consensus 155 ~l~~~l~---~~~~~v~l~~-p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i 229 (386)
T 1u08_A 155 EFAALLS---ERTRLVILNT-PHNPSATVW-QQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAV 229 (386)
T ss_dssp HHHHHCC---TTEEEEEEES-SCTTTCCCC-CHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEE
T ss_pred HHHHhhc---ccCEEEEEeC-CCCCCCccC-CHHHHHHHHHHHHHcCcEEEEEccccccccCCCCCcChhcccCccCcEE
Confidence 8888874 4577777777 789999765 7889999999999999999999999988666641 1221 234445
Q ss_pred ceeeeccccC-CCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHH
Q psy8199 485 DFLCLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK--DNILQRISQDMKKI 561 (965)
Q Consensus 485 Divt~sK~l~-gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~--~~~~~~~~~~~~~l 561 (965)
.+.++||.++ .| +|+|++++++++++.+.. ..+..+++.++++++++.++|+...+ +...++++++.+++
T Consensus 230 ~~~s~sK~~~~~G-~r~G~~~~~~~~~~~l~~------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l 302 (386)
T 1u08_A 230 AVSSFGKTYHMTG-WKVGYCVAPAPISAEIRK------VHQYLTFSVNTPAQLALADMLRAEPEHYLALPDFYRQKRDIL 302 (386)
T ss_dssp EEEEHHHHTTCGG-GCCEEEECCHHHHHHHHH------HHHHHTSSCCHHHHHHHHHHHHHCTHHHHTHHHHHHHHHHHH
T ss_pred EEecchhhcCCcc-cceEEEEcCHHHHHHHHH------HHHhhccCCChHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 5668999997 45 899999999999888765 23445788899999999999975421 23556666677777
Q ss_pred HHHHHcccCCCceeeeece-eEEEEEEEeecCccchhhHHHHHHHHHH-HcCcEEeec---------CCEEEEeCCcccC
Q psy8199 562 TKALTSLITHPKIINFRQK-GMIWAFDVIIEDPEQIETFSKKFFVAAL-KNELLLRPI---------GNTVYLMPPYILN 630 (965)
Q Consensus 562 ~~~L~~l~~~~~i~~v~g~-G~~~~i~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~---------~~~lR~~p~~~~t 630 (965)
.+.|+++ ++..+.+. |.++++.+. +.. ......+.+.|. ++||++.|+ .+++||+++ .+
T Consensus 303 ~~~L~~~----g~~~~~~~~g~~~~~~~~--~~~--~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~iRis~~--~~ 372 (386)
T 1u08_A 303 VNALNES----RLEILPCEGTYFLLVDYS--AVS--TLDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFA--KK 372 (386)
T ss_dssp HHHTTSS----SCEECCCCBSSEEEEECT--TTC--CSCHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEECC--SC
T ss_pred HHHHHHC----CCeecCCCceEEEEEecC--CCC--CCCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCEEEEEEc--CC
Confidence 7766553 34433344 567777664 110 011345667676 689999863 268999976 58
Q ss_pred HHHHHHHHHhhhc
Q psy8199 631 KNEIQHMTSAIFQ 643 (965)
Q Consensus 631 ~~~i~~~~~~l~~ 643 (965)
+++++++++++.+
T Consensus 373 ~~~i~~~~~~l~~ 385 (386)
T 1u08_A 373 ESTLLAAAERLRQ 385 (386)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988753
|
| >1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=4.2e-25 Score=249.81 Aligned_cols=325 Identities=11% Similarity=0.084 Sum_probs=232.2
Q ss_pred cccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHH
Q psy8199 254 KRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKM 333 (965)
Q Consensus 254 ~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~ 333 (965)
..++|+.+|.. .++ .+|.+.+++.++++...++. ......++.+.++++++.+.+++++++||++|++.+++.
T Consensus 25 ~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~y~----~~~~~~~l~~~la~~~~~~~~~v~~~~g~~~a~~~~~~~ 97 (381)
T 1v2d_A 25 LGAVNLGQGFP--SNP-PPPFLLEAVRRALGRQDQYA----PPAGLPALREALAEEFAVEPESVVVTSGATEALYVLLQS 97 (381)
T ss_dssp HTCEECCCCSC--SSC-CCHHHHHHHHHHTTTSCSCC----CTTCCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHH
T ss_pred CCeEEecCCCC--CCC-CCHHHHHHHHHHHHHhcCCC----CCCCCHHHHHHHHHhcCCChhhEEEcCChHHHHHHHHHH
Confidence 35899988754 456 68999999999987622221 122356788888888876667899999999999999998
Q ss_pred HHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCC---CCCCCCCCCChhHHHHHHHHH
Q psy8199 334 SFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTP---DSRNINKGNSANEIARCAIFD 410 (965)
Q Consensus 334 a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~d~~~ 410 (965)
+. .++++|++.+++||++....... | ..+..+|.+ .. .. .|+++
T Consensus 98 ~~--------~~gd~Vl~~~~~~~~~~~~~~~~-g------------~~~~~v~~~~~~~~-~~-----------~d~~~ 144 (381)
T 1v2d_A 98 LV--------GPGDEVVVLEPFFDVYLPDAFLA-G------------AKARLVRLDLTPEG-FR-----------LDLSA 144 (381)
T ss_dssp HC--------CTTCEEEEEESCCTTHHHHHHHT-T------------CEEEEEECEEETTE-EE-----------CCHHH
T ss_pred hC--------CCCCEEEEcCCCchhHHHHHHHc-C------------CEEEEEeCCCCCcc-CC-----------cCHHH
Confidence 73 35688999999999975432221 1 123334432 11 11 26788
Q ss_pred HHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccc-ccccc--ccCCCccee
Q psy8199 411 LEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK-FFACE--HAEIWPDFL 487 (965)
Q Consensus 411 le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~-~~~~~--~~~~~pDiv 487 (965)
|++++. +++++|++++ ++|++|.+. +.+++++|.++|++||+++|+||+|++|.. |. ..... ..+..+++.
T Consensus 145 l~~~l~---~~~~~v~~~~-~~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~-g~~~~~~~~~~~~~~~~~~ 218 (381)
T 1v2d_A 145 LEKALT---PRTRALLLNT-PMNPTGLVF-GERELEAIARLARAHDLFLISDEVYDELYY-GERPRRLREFAPERTFTVG 218 (381)
T ss_dssp HHTTCC---TTEEEEEEES-SCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBS-SSCCCCHHHHCTTTEEEEE
T ss_pred HHHhcC---cCCEEEEECC-CCCCCCCcc-CHHHHHHHHHHHHHcCCEEEEEcCcccccc-CCCCCCHHHhcCCCEEEEe
Confidence 887764 4577777777 799999875 678899999999999999999999998743 42 11111 345566677
Q ss_pred eeccccC-CCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHH--hc--ccHHHHHHHHHHHHH
Q psy8199 488 CLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIF--NK--DNILQRISQDMKKIT 562 (965)
Q Consensus 488 t~sK~l~-gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~--~~--~~~~~~~~~~~~~l~ 562 (965)
++||.++ .| +++|++++++++++.+.. ..+..+++.++++++++.++|+.. .+ +...++++++.+++.
T Consensus 219 s~sK~~~~~G-~r~G~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 291 (381)
T 1v2d_A 219 SAGKRLEATG-YRVGWIVGPKEFMPRLAG------MRQWTSFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLA 291 (381)
T ss_dssp EHHHHTTCGG-GCCEEEECCTTTHHHHHH------HHHHHTSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred echhhcCCcc-cceEEEEeCHHHHHHHHH------HHhhcccCCCcHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHH
Confidence 8999887 45 799999999998887764 233457788999999999999865 22 345677777888888
Q ss_pred HHHHcccCCCceeeeece-eEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec---------CCEEEEeCCcccCHH
Q psy8199 563 KALTSLITHPKIINFRQK-GMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI---------GNTVYLMPPYILNKN 632 (965)
Q Consensus 563 ~~L~~l~~~~~i~~v~g~-G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~---------~~~lR~~p~~~~t~~ 632 (965)
+.|++. ++..+.+. |.++.+.+. +. + +.+.+.++||++.++ .+++|++++. +++
T Consensus 292 ~~L~~~----g~~~~~~~~~~~~~~~~~--~~-------~-~~~~l~~~gi~v~~g~~~~~~~~~~~~iRi~~~~--~~~ 355 (381)
T 1v2d_A 292 GGLRAM----GLRVYVPEGTYFLMAELP--GW-------D-AFRLVEEARVALIPASAFYLEDPPKDLFRFAFCK--TEE 355 (381)
T ss_dssp HHHHHT----TCCEECCSBSSEEEEECT--TC-------C-HHHHHHHTCEECEEGGGGCSSSCCTTEEEEECCS--CHH
T ss_pred HHHHHC----CCEecCCCcceEEEEecC--hH-------h-HHHHHHhCCEEEecchHhCCCCCCCCEEEEEeCC--CHH
Confidence 888764 33333444 556666653 21 1 556678999999873 3689999775 899
Q ss_pred HHHHHHHhhhccccc
Q psy8199 633 EIQHMTSAIFQTFNE 647 (965)
Q Consensus 633 ~i~~~~~~l~~~~~~ 647 (965)
+++++++++.+.+.+
T Consensus 356 ~i~~~~~~l~~~l~~ 370 (381)
T 1v2d_A 356 ELHLALERLGRVVNS 370 (381)
T ss_dssp HHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999998766543
|
| >3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.5e-24 Score=244.18 Aligned_cols=320 Identities=12% Similarity=0.059 Sum_probs=223.0
Q ss_pred ccccccchhccCCCCCHHHHHHHHHHHhhc----cccccCCCCcHHHHHHHHHHHhh--cCCCCCeEEEcCChhHHHHHH
Q psy8199 257 LDAISSWWVNLFGHSNSYINKALKNQLNKL----EHVMLSNLTHKPVIKLSEKLSSL--TQYKLGHCFYGSDGASAVEVA 330 (965)
Q Consensus 257 lD~~~~~~~~~lGh~~p~v~~av~~~~~~~----~~~~~~~~~~~~~~~la~~l~~~--~~~~~~~v~~~~sGseA~~~A 330 (965)
+||.++.. ++| .+|++.+++.+++++. ..+....+ .+....+++.+.+. .+.+.+++++++||++|++.+
T Consensus 33 idl~~~~~--~~~-~~~~v~~a~~~~~~~~~~~~~~y~~~~~-~~l~~~la~~l~~~~g~~~~~~~v~~~~G~~~al~~~ 108 (369)
T 3cq5_A 33 IRLNTNEN--PYP-PSEALVADLVATVDKIATELNRYPERDA-VELRDELAAYITKQTGVAVTRDNLWAANGSNEILQQL 108 (369)
T ss_dssp EECSSCCC--CSC-CCHHHHHHHHHHHHHHGGGTTSCCCTTC-HHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHH
T ss_pred eeccCCCC--CCC-CCHHHHHHHHHHHHhcccccccCCCccH-HHHHHHHHHhhhhcccCCCChHhEEECCChHHHHHHH
Confidence 89888754 577 7899999999998763 11211111 23334444444443 344567899999999999999
Q ss_pred HHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHH
Q psy8199 331 LKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFD 410 (965)
Q Consensus 331 l~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 410 (965)
++.+.. ++++|++.+++||++.......+. .+..+|..... . .|+++
T Consensus 109 ~~~l~~--------~gd~Vl~~~~~y~~~~~~~~~~g~-------------~~~~v~~~~~~-~-----------~d~~~ 155 (369)
T 3cq5_A 109 LQAFGG--------PGRTALGFQPSYSMHPILAKGTHT-------------EFIAVSRGADF-R-----------IDMDV 155 (369)
T ss_dssp HHHHCS--------TTCEEEEEESSCTHHHHHHHHTTC-------------EEEEEECCTTS-S-----------CCHHH
T ss_pred HHHhcC--------CCCEEEEcCCChHHHHHHHHHcCC-------------EEEEecCCcCC-C-----------CCHHH
Confidence 987732 468899999999988544333221 23344432211 1 26788
Q ss_pred HHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccc-cccC-CCcceee
Q psy8199 411 LEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFAC-EHAE-IWPDFLC 488 (965)
Q Consensus 411 le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~-~~~~-~~pDivt 488 (965)
|++++++. ++++|++++ ++|++|.+.+ ++++.++|+.+++++|+||+|++|++....... +.++ ..+.+.+
T Consensus 156 l~~~i~~~--~~~~v~~~~-~~nptG~~~~----~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s 228 (369)
T 3cq5_A 156 ALEEIRAK--QPDIVFVTT-PNNPTGDVTS----LDDVERIINVAPGIVIVDEAYAEFSPSPSATTLLEKYPTKLVVSRT 228 (369)
T ss_dssp HHHHHHHH--CCSEEEEES-SCTTTCCCCC----HHHHHHHHHHCSSEEEEECTTGGGCCSCCGGGGTTTCTTTEEEEEE
T ss_pred HHHHhhcc--CCCEEEEeC-CCCCCCCCCC----HHHHHHHHHhCCCEEEEECCchhhcCCcchHHHHhhCCCCEEEEEe
Confidence 88888642 356677777 7999998876 667777788888999999999988643222221 2233 3345668
Q ss_pred eccccC-CCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHHH
Q psy8199 489 LSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN-KDNILQRISQDMKKITKALT 566 (965)
Q Consensus 489 ~sK~l~-gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~-~~~~~~~~~~~~~~l~~~L~ 566 (965)
+||+++ +| +|+|++++++++++.+.. ...+++.|+++++++.++|+..+ -+...++++++.+++.+.|+
T Consensus 229 ~sK~~~~~G-~r~G~~~~~~~~~~~l~~--------~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~ 299 (369)
T 3cq5_A 229 MSKAFDFAG-GRLGYFVANPAFIDAVML--------VRLPYHLSALSQAAAIVALRHSADTLGTVEKLSVERVRVAARLE 299 (369)
T ss_dssp SSSTTSCGG-GCCEEEEECTHHHHHHHT--------TSCTTCSCHHHHHHHHHHHHTHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred chHhcCCcc-cceEEEEeCHHHHHHHHH--------cCCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999997 55 799999999999888865 22456789999999999997432 13456777788888888887
Q ss_pred cccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec--CCEEEEeCCcccCHHHHHHHHHhhhcc
Q psy8199 567 SLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI--GNTVYLMPPYILNKNEIQHMTSAIFQT 644 (965)
Q Consensus 567 ~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~--~~~lR~~p~~~~t~~~i~~~~~~l~~~ 644 (965)
+. ++..+++.|.++.+.+. .+ ...+.+.|.++||++.++ .+++|++++ ++++++++++++.+.
T Consensus 300 ~~----g~~~~~~~~~~~~~~~~-~~-------~~~l~~~l~~~gi~v~~~~~~~~iRis~~---~~~~i~~~~~~l~~~ 364 (369)
T 3cq5_A 300 EL----GYAVVPSESNFVFFGDF-SD-------QHAAWQAFLDRGVLIRDVGIAGHLRTTIG---VPEENDAFLDAAAEI 364 (369)
T ss_dssp HH----TCEEECCSSSEEEEECC-SS-------HHHHHHHHHHTTEECBCCSCTTEEEEECC---CHHHHHHHHHHHHHH
T ss_pred hC----CCEECCCCCeEEEEECC-CC-------HHHHHHHHHHCCEEEEECCCCCeEEEEeC---CHHHHHHHHHHHHHH
Confidence 63 34445677888877653 11 345778888999999986 479999976 789999999887654
|
| >1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=7.5e-25 Score=248.49 Aligned_cols=335 Identities=13% Similarity=0.085 Sum_probs=232.6
Q ss_pred cccccccccchhccCCCCCHHHHHHHHHHHhhc-cccccCCCCcHHHHHHHHHHHhhcC--CCCCe-EEEcCChhHHHHH
Q psy8199 254 KRYLDAISSWWVNLFGHSNSYINKALKNQLNKL-EHVMLSNLTHKPVIKLSEKLSSLTQ--YKLGH-CFYGSDGASAVEV 329 (965)
Q Consensus 254 ~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~-~~~~~~~~~~~~~~~la~~l~~~~~--~~~~~-v~~~~sGseA~~~ 329 (965)
..++||.++.. .+| .+|++.+++.++++.. ..+....+..+....+++.+.+..+ .+.++ +++++||++|++.
T Consensus 26 ~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~~~g~~~a~~~ 102 (389)
T 1gd9_A 26 KDVISLGIGEP--DFD-TPQHIKEYAKEALDKGLTHYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLM 102 (389)
T ss_dssp SSCEECCCCSC--SSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHHH
T ss_pred cCeEecCCCCC--CCC-CCHHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCeEEEcCChHHHHHH
Confidence 46899988753 466 6899999999998763 2232222345666777777766555 35678 9999999999999
Q ss_pred HHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHH
Q psy8199 330 ALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIF 409 (965)
Q Consensus 330 Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 409 (965)
+++.+. .++++|++.+++||++...+...+. .+..+|.....+.. .|++
T Consensus 103 ~~~~~~--------~~gd~vl~~~~~~~~~~~~~~~~g~-------------~~~~v~~~~~~~~~----------~d~~ 151 (389)
T 1gd9_A 103 GLSAFL--------KDGEEVLIPTPAFVSYAPAVILAGG-------------KPVEVPTYEEDEFR----------LNVD 151 (389)
T ss_dssp HHTTTC--------CTTCEEEEEESCCTTHHHHHHHHTC-------------EEEEEECCGGGTTC----------CCHH
T ss_pred HHHHhC--------CCCCEEEEcCCCchhHHHHHHHCCC-------------EEEEeccCCccCCC----------CCHH
Confidence 998763 2568899999999997543322211 23344432100000 2678
Q ss_pred HHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccc-ccccccc-CC-Ccce
Q psy8199 410 DLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK-FFACEHA-EI-WPDF 486 (965)
Q Consensus 410 ~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~-~~~~~~~-~~-~pDi 486 (965)
+|++++++ ++++|++++ ++|++|.+. +.+.+++|.++|++||+++|+||+|+++.+.|. ......+ +. ..|+
T Consensus 152 ~l~~~l~~---~~~~v~~~~-~~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i 226 (389)
T 1gd9_A 152 ELKKYVTD---KTRALIINS-PCNPTGAVL-TKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTI 226 (389)
T ss_dssp HHHHHCCT---TEEEEEEES-SCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEE
T ss_pred HHHHhcCc---CceEEEEEC-CCCCCCcCC-CHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCCCCHhhccCCCCCEE
Confidence 88888752 567777776 788899765 788999999999999999999999998876664 3333332 21 2354
Q ss_pred --eeeccccC-CCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc----ccHHHHHHHHHH
Q psy8199 487 --LCLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK----DNILQRISQDMK 559 (965)
Q Consensus 487 --vt~sK~l~-gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~----~~~~~~~~~~~~ 559 (965)
.++||.++ .| +|+|++++++++++.+.. ..+..+++.++++++++.++|+.... +...++++++.+
T Consensus 227 ~~~s~sK~~~~~G-~r~G~~~~~~~~~~~l~~------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~ 299 (389)
T 1gd9_A 227 TVNGFSKTFAMTG-WRLGFVAAPSWIIERMVK------FQMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRK 299 (389)
T ss_dssp EEEESTTTTTCGG-GCCEEEECCHHHHHHHHH------HHTTTTCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred EEecChhhcCCcc-cceEEEEECHHHHHHHHH------HHhhhccCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHH
Confidence 37899997 45 799999999999888765 34556788899999999999875332 334566677777
Q ss_pred HHHHHHHcccCCCceeeeece-eEEEEEEEeecCccchhhHHHHHHHHHH-HcCcEEeec-------CCEEEEeCCcccC
Q psy8199 560 KITKALTSLITHPKIINFRQK-GMIWAFDVIIEDPEQIETFSKKFFVAAL-KNELLLRPI-------GNTVYLMPPYILN 630 (965)
Q Consensus 560 ~l~~~L~~l~~~~~i~~v~g~-G~~~~i~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~-------~~~lR~~p~~~~t 630 (965)
++.+.|+++ ++..+.+. |.++++.+. ..+ .....+.+.|. ++||++.++ .+++||+++ .+
T Consensus 300 ~l~~~L~~~----g~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~--~~ 368 (389)
T 1gd9_A 300 LVWKRLNEM----GLPTVKPKGAFYIFPRIR-DTG----LTSKKFSELMLKEARVAVVPGSAFGKAGEGYVRISYA--TA 368 (389)
T ss_dssp HHHHHHHHT----TCCCCCCCBTTEECCBCG-GGT----CCHHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEECC--SC
T ss_pred HHHHHHHHc----CCeecCCCeeeEEEEecc-CCC----CCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEec--CC
Confidence 787777765 23333344 445555543 100 11346778887 899999874 368999976 38
Q ss_pred HHHHHHHHHhhhccc
Q psy8199 631 KNEIQHMTSAIFQTF 645 (965)
Q Consensus 631 ~~~i~~~~~~l~~~~ 645 (965)
+++++++++++.+.+
T Consensus 369 ~~~i~~~l~~l~~~~ 383 (389)
T 1gd9_A 369 YEKLEEAMDRMERVL 383 (389)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999998887544
|
| >3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.93 E-value=7.1e-25 Score=252.85 Aligned_cols=342 Identities=11% Similarity=0.063 Sum_probs=239.5
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhc--cccccCCCCcHHHHHHHHHHHhhcC--CCCCeEEEcC
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKL--EHVMLSNLTHKPVIKLSEKLSSLTQ--YKLGHCFYGS 321 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~--~~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~~~ 321 (965)
..+.|.+|+.++||.+|.. +++ .+|++.+|+.+++... ..+....+..+....+++.+.+..+ ...+++++++
T Consensus 36 ~~~~~~~g~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~i~~t~ 112 (437)
T 3g0t_A 36 TNLEKATGTKFCRMEMGVP--GLP-APQIGIETEIQKLREGVASIYPNLDGLPELKQEASRFAKLFVNIDIPARACVPTV 112 (437)
T ss_dssp HHHHHHHTCCCEECCCCSC--CSC-CCHHHHHHHHHHHHHTGGGSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEES
T ss_pred HHHHHhcCCCEEeccCcCC--CCC-CCHHHHHHHHHHHhCCcCcCCCCCCChHHHHHHHHHHHHHhhCCCCCcccEEEeC
Confidence 4567888999999998864 455 6899999999998752 2232222334556666666665433 2457999999
Q ss_pred ChhHHHHHHHHHHHHHHHhcCCCCce--EEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCC
Q psy8199 322 DGASAVEVALKMSFHYWYNKGFLNKK--KFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNS 399 (965)
Q Consensus 322 sGseA~~~Al~~a~~~~~~~g~~~~~--~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (965)
||++|++.+++.+..+ .+++ +|++.+++||++.......+. .+..+|.... +.
T Consensus 113 g~t~al~~~~~~l~~~------~~gd~~~Vl~~~p~~~~~~~~~~~~g~-------------~~~~v~~~~~-~~----- 167 (437)
T 3g0t_A 113 GSMQGCFVSFLVANRT------HKNREYGTLFIDPGFNLNKLQCRILGQ-------------KFESFDLFEY-RG----- 167 (437)
T ss_dssp HHHHHHHHHHHHHTTS------CTTCSCCEEEEESCCHHHHHHHHHHTC-------------CCEEEEGGGG-CT-----
T ss_pred CHHHHHHHHHHHHhcC------CCCCccEEEEeCCCcHhHHHHHHHcCC-------------EEEEEeecCC-CC-----
Confidence 9999999999987410 1456 899999999997544433222 2334443210 00
Q ss_pred hhHHHHHHHHHHHHHHHhCCCcEEEE-EEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccc---
Q psy8199 400 ANEIARCAIFDLEILLKKNHNKIAAI-IIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFF--- 475 (965)
Q Consensus 400 ~~~~~~~d~~~le~~l~~~~~~~aai-i~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~--- 475 (965)
..|+++|+++++. .++.+| +++| +|++|.+. +.+.+++|.++|++||+++|+||+|+++...+...
T Consensus 168 -----~~d~~~l~~~l~~--~~~~~v~l~~p--~nptG~~~-~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~ 237 (437)
T 3g0t_A 168 -----EKLREKLESYLQT--GQFCSIIYSNP--NNPTWQCM-TDEELRIIGELATKHDVIVIEDLAYFGMDFRKDYSHPG 237 (437)
T ss_dssp -----THHHHHHHHHHTT--TCCCEEEEESS--CTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCCTTSCCCSTT
T ss_pred -----ccCHHHHHHHHhc--CCceEEEEeCC--CCCCCCcC-CHHHHHHHHHHHHHCCcEEEEEcchhhcccCCCcCccc
Confidence 1488999999842 234444 5566 88999766 67779999999999999999999999875443211
Q ss_pred ------cccc-cCCCcceeeeccccC-CCcccceeeeecHHHHH-h-----------------hhccCCcccccccCCCC
Q psy8199 476 ------ACEH-AEIWPDFLCLSKGIT-GGYLPLSLVMTTDKIYN-S-----------------IYYKNNINIFLHSHSYS 529 (965)
Q Consensus 476 ------~~~~-~~~~pDivt~sK~l~-gG~~pig~v~~~~~i~~-~-----------------~~~~~~~~~~~~~~t~~ 529 (965)
.+.. .+....+.++||.++ .| +++|++++++++++ . +.. .....+++
T Consensus 238 ~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 310 (437)
T 3g0t_A 238 EPLYQPSVANYTDNYILALSSSKAFSYAG-QRIGVLMISGKLYEREYPDLEESFGRLRFGEALSSS------ALYALSSG 310 (437)
T ss_dssp SSCCCCCGGGTCSCEEEEEESTTTTSCGG-GCCEEEEECHHHHHCBCGGGHHHHSCSBHHHHHHTT------HHHHHHSS
T ss_pred ccchhhccCCCCCcEEEEEcCccCCCCcc-ceeEEEEECHHHhhhhhhcccccccccchhHHHHHH------HHhhhcCC
Confidence 1111 222222447899987 56 79999999999988 6 433 23445778
Q ss_pred CCHHHHHHHHHHHHHHh-----cccHHHHHHHHHHHHHHHHHcccCCCceeee-------e-ceeEEEEEEEeecCccch
Q psy8199 530 GNPLACCAALATLEIFN-----KDNILQRISQDMKKITKALTSLITHPKIINF-------R-QKGMIWAFDVIIEDPEQI 596 (965)
Q Consensus 530 ~~~~~~aaa~a~L~~~~-----~~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v-------~-g~G~~~~i~~~~~~~~~~ 596 (965)
.++++++++.++|+... -+...++++++.+++.+.|+++ ++..+ + ..|.++.+.+. .
T Consensus 311 ~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~~~~~~~--~---- 380 (437)
T 3g0t_A 311 ATHSAQWGMAAMLKACNDGEYNFRDSVIEYGRKARIMKKMFLDN----GFNIVYDKDGNEPLADGFYFTVGYK--G---- 380 (437)
T ss_dssp SCHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTT----TEEESSCEETTEECCSSSEEEEEET--T----
T ss_pred CCHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHc----CCEEeccccCCCCCceeEEEEEecC--C----
Confidence 89999999999998764 2456777888888888888765 44444 4 56777777663 1
Q ss_pred hhHHHHHHHHHHHcCcEEeecC-------CEEEEeCCcccCHHHHHHHHHhhhcc
Q psy8199 597 ETFSKKFFVAALKNELLLRPIG-------NTVYLMPPYILNKNEIQHMTSAIFQT 644 (965)
Q Consensus 597 ~~~~~~~~~~l~~~Gi~~~~~~-------~~lR~~p~~~~t~~~i~~~~~~l~~~ 644 (965)
.....+.+.|.++||.+.++. +++|++++.. ++++++++++++.+.
T Consensus 381 -~~~~~l~~~L~~~gi~v~~~~~~~~~~~~~iRis~~~~-~~e~i~~~~~~l~~~ 433 (437)
T 3g0t_A 381 -MDSSKLIEKFVRYGMCAITLKTTGSKRNEAMRICTSLL-PESQFPDLEKRLQML 433 (437)
T ss_dssp -CCHHHHHHHHHHTTEECEESTTTTCCCTTCEEEECSSS-CGGGHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHcCeEEeeccccCCCCCCEEEEEEecC-CHHHHHHHHHHHHHH
Confidence 114467888999999998854 6799998844 999999999888654
|
| >1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.6e-24 Score=248.98 Aligned_cols=340 Identities=14% Similarity=0.083 Sum_probs=227.9
Q ss_pred ccccccccchhccCCCCCHHHHHHHHHHH------------hhccccccCCCCcHHHHHHHHHHHhhcC----CCCCeEE
Q psy8199 255 RYLDAISSWWVNLFGHSNSYINKALKNQL------------NKLEHVMLSNLTHKPVIKLSEKLSSLTQ----YKLGHCF 318 (965)
Q Consensus 255 ~ylD~~~~~~~~~lGh~~p~v~~av~~~~------------~~~~~~~~~~~~~~~~~~la~~l~~~~~----~~~~~v~ 318 (965)
.++|+.++. +++| +|.+.+++.++. ....+|....+..+....+++.+.+.++ .+.++++
T Consensus 37 ~~i~l~~~~--~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~~i~ 112 (428)
T 1iay_A 37 GVIQMGLAE--NQLC--LDLIEDWIKRNPKGSICSEGIKSFKAIANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVV 112 (428)
T ss_dssp SBEECSSCC--CCSS--HHHHHHHHHHCTTSSTTC----CHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTCSCCCTTSCE
T ss_pred ceeeecccc--chhh--HHHHHHHHHhccccccccccccccHhhcCCCCCCCcHHHHHHHHHHHHHhcCCCCCCChhhEE
Confidence 678887663 4666 468888887543 2222333232345556666666665443 3568999
Q ss_pred EcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCC
Q psy8199 319 YGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGN 398 (965)
Q Consensus 319 ~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (965)
+++||++|++.++++++. ++++|++.+++||++........|. .+..+|........
T Consensus 113 ~~~G~~~ai~~~~~~~~~--------~gd~Vl~~~p~y~~~~~~~~~~~g~------------~~~~v~~~~~~~~~--- 169 (428)
T 1iay_A 113 MAGGATGANETIIFCLAD--------PGDAFLVPSPYYPAFNRDLRWRTGV------------QLIPIHCESSNNFK--- 169 (428)
T ss_dssp EEEHHHHHHHHHHHHHCC--------TTCEEEEESSCCTTHHHHTTTTTCC------------EEEEECCCTTTTTC---
T ss_pred EccChHHHHHHHHHHhCC--------CCCeEEEccCCCcchHHHHHHhcCC------------EEEEeecCCccCCc---
Confidence 999999999999998742 4578999999999975433222221 22334432110000
Q ss_pred ChhHHHHHHHHHHHHHHHhC---CCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccc
Q psy8199 399 SANEIARCAIFDLEILLKKN---HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFF 475 (965)
Q Consensus 399 ~~~~~~~~d~~~le~~l~~~---~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~ 475 (965)
.|+++|++++++. ..++++|++.. ++|++|.+. +.+++++|.++|++||+++|+||+|+++++.|..+
T Consensus 170 -------~d~~~l~~~l~~~~~~~~~~~~v~l~~-p~nptG~~~-~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~ 240 (428)
T 1iay_A 170 -------ITSKAVKEAYENAQKSNIKVKGLILTN-PSNPLGTTL-DKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQF 240 (428)
T ss_dssp -------CCHHHHHHHHHHHHHTTCCEEEEEEES-SCTTTCCCC-CHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCC
T ss_pred -------CCHHHHHHHHHHHHhcCCceEEEEEcC-CCCCCCCcC-CHHHHHHHHHHHHHCCeEEEEeccccccccCCCCc
Confidence 2678888888642 33566666655 588899765 88999999999999999999999999876655322
Q ss_pred -ccccc-------CCCcc----eeeeccccC-CCcccceeeee-cHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHH
Q psy8199 476 -ACEHA-------EIWPD----FLCLSKGIT-GGYLPLSLVMT-TDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALAT 541 (965)
Q Consensus 476 -~~~~~-------~~~pD----ivt~sK~l~-gG~~pig~v~~-~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~ 541 (965)
....+ ++.+| +.+|||+++ .| +|+|++++ ++++++.+.. ...+++.++++++++.++
T Consensus 241 ~~~~~~~~~~~~~~~~~d~viv~~s~sK~~g~~G-lr~G~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~a~~~~ 311 (428)
T 1iay_A 241 VSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPG-FRVGIIYSFNDDVVNCARK--------MSSFGLVSTQTQYFLAAM 311 (428)
T ss_dssp CCHHHHHTSGGGTTSCTTSEEEEEESTTTSSCGG-GCEEEEEESCHHHHHHHHH--------HHTTSCCCHHHHHHHHHH
T ss_pred cCHHHhccccccccCCCCcEEEEecchhhcCCCC-ceEEEEEeCCHHHHHHHHH--------HHhcccCCHHHHHHHHHH
Confidence 21111 23367 457999997 55 89999998 6888887764 123467899999999888
Q ss_pred HHHHh-----cccHHHHHHHHHHHHHHHHHcccCCCceeeeec-eeEEEEEEEeecCc-cchhhHHHHHHHHHHHc-CcE
Q psy8199 542 LEIFN-----KDNILQRISQDMKKITKALTSLITHPKIINFRQ-KGMIWAFDVIIEDP-EQIETFSKKFFVAALKN-ELL 613 (965)
Q Consensus 542 L~~~~-----~~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g-~G~~~~i~~~~~~~-~~~~~~~~~~~~~l~~~-Gi~ 613 (965)
|+... -++..++++++.+++.+.|+++ ++..+++ .|+|+++.+. ... .........+.+.|.++ ||+
T Consensus 312 l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~gi~ 386 (428)
T 1iay_A 312 LSDEKFVDNFLRESAMRLGKRHKHFTNGLEVV----GIKCLKNNAGLFCWMDLR-PLLRESTFDSEMSLWRVIINDVKLN 386 (428)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----TCCBCCCSSSSEEEEECG-GGCSSSSHHHHHHHHHHHHHTSCEE
T ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCcccCCCeeEEEEEech-hhcCCCchhHHHHHHHHHHHhCCEE
Confidence 86421 1345667777788888888765 3333445 5777777774 110 00011234678888876 999
Q ss_pred Eeec-------CCEEEEeCCcccCHHHHHHHHHhhhccc
Q psy8199 614 LRPI-------GNTVYLMPPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 614 ~~~~-------~~~lR~~p~~~~t~~~i~~~~~~l~~~~ 645 (965)
+.++ .+++|++++ ..++++++++++++.+.+
T Consensus 387 v~~~~~~~~~~~~~iRis~~-~~~~e~i~~~~~~l~~~l 424 (428)
T 1iay_A 387 VSPGSSFECQEPGWFRVCFA-NMDDGTVDIALARIRRFV 424 (428)
T ss_dssp CEEGGGGTCSSSSEEEEECS-SSCHHHHHHHHHHHHHHH
T ss_pred EeCchhhCCCCCCEEEEEEe-cCCHHHHHHHHHHHHHHH
Confidence 9874 258999987 589999999999887643
|
| >3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.6e-24 Score=246.50 Aligned_cols=333 Identities=12% Similarity=0.102 Sum_probs=233.4
Q ss_pred CCcccccccccchhccCCCCCHHHHHHHHHHHhhc-----cccccCCCCcHHHHHHHHHHHhhcC--CCCCeEEEcCChh
Q psy8199 252 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKL-----EHVMLSNLTHKPVIKLSEKLSSLTQ--YKLGHCFYGSDGA 324 (965)
Q Consensus 252 dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~-----~~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~~~sGs 324 (965)
.|+.+|||.+|. +....+|++.+|+.++++.. ..+....+..+....+++.+.+.++ .+.+++++++||+
T Consensus 33 ~~~~~i~l~~~~---~~~~~~~~v~~a~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~~~g~~ 109 (398)
T 3ele_A 33 GKENVYDFSIGN---PSIPAPQIVNDTIKELVTDYDSVALHGYTSAQGDVETRAAIAEFLNNTHGTHFNADNLYMTMGAA 109 (398)
T ss_dssp CGGGCEECCSCC---CCSCCCHHHHHHHHHHHHHSCHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHH
T ss_pred CCCCeEEeecCC---CCCCCCHHHHHHHHHHHhcCCccccCCcCCCCCcHHHHHHHHHHHHHHhCCCCChHHEEEccCHH
Confidence 457899998873 33337899999999998763 2233233445677788888877665 3567999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHH
Q psy8199 325 SAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIA 404 (965)
Q Consensus 325 eA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (965)
+|++.+++.+.. +++++|++.+++||++.......+. .+..+|.......
T Consensus 110 ~al~~~~~~l~~-------~g~d~vl~~~p~~~~~~~~~~~~g~-------------~~~~v~~~~~~~~---------- 159 (398)
T 3ele_A 110 ASLSICFRALTS-------DAYDEFITIAPYFPEYKVFVNAAGA-------------RLVEVPADTEHFQ---------- 159 (398)
T ss_dssp HHHHHHHHHHCC-------STTCEEEEESSCCTHHHHHHHHTTC-------------EEEEECCCTTTSS----------
T ss_pred HHHHHHHHHHcC-------CCCCEEEEeCCCchhhHHHHHHcCC-------------EEEEEecCCcCCc----------
Confidence 999999998743 2338999999999997544333221 2344444321111
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHh------cCCeEEEeccccCCCccccccc--
Q psy8199 405 RCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNN------YNIHLIADEIAVGCGRTGKFFA-- 476 (965)
Q Consensus 405 ~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~------~g~llI~DEv~tg~gr~G~~~~-- 476 (965)
.|+++|++++. +++.+|++.. ++|++|.+. +.+.+++|.++|++ ||+++|+||+|++|.+.|....
T Consensus 160 -~d~~~l~~~l~---~~~~~v~~~~-p~nptG~~~-~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~ 233 (398)
T 3ele_A 160 -IDFDALEERIN---AHTRGVIINS-PNNPSGTVY-SEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIKVPFV 233 (398)
T ss_dssp -CCHHHHHHTCC---TTEEEEEECS-SCTTTCCCC-CHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCTTCCCCCG
T ss_pred -CCHHHHHHHhC---cCCCEEEEcC-CCCCCCCCC-CHHHHHHHHHHHHhhhhccCCCeEEEEeccccccccCCCCcCCh
Confidence 26788888774 3567777766 689999876 66779999999999 9999999999999877664322
Q ss_pred ccccCCCcceeeeccccC-CCcccceeeeecHHHHH------hhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhccc
Q psy8199 477 CEHAEIWPDFLCLSKGIT-GGYLPLSLVMTTDKIYN------SIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDN 549 (965)
Q Consensus 477 ~~~~~~~pDivt~sK~l~-gG~~pig~v~~~~~i~~------~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~ 549 (965)
....+....+.++||.++ .| +++|++++++++++ .+.. .....++++.++++++++.+.|+ +..
T Consensus 234 ~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~a~~~~l~---~~~ 304 (398)
T 3ele_A 234 TKYYDNTLVCYSYSKSLSLPG-ERIGYVLVPDEVYDKAELYAAVCG-----AGRALGYVCAPSLFQKMIVKCQG---ATG 304 (398)
T ss_dssp GGTCSSEEEEEESTTTSSCTT-TCCEEEECCTTSTTHHHHHHHHHH-----HHHHTTCCCSCHHHHHHHTTCTT---CCC
T ss_pred HhhcCCeEEEEehhhcCCCcc-ceeEEEEEcchhhhHHHHHHHHHH-----HhhhccccCCCHHHHHHHHHHhc---CHH
Confidence 233333344457999997 56 89999999887443 2221 01123467778888888777664 344
Q ss_pred HHHHHHHHHHHHHHHHHcccCCCceeeeeceeEE-EEEEEeecCccchhhHHHHHHHHHHHcCcEEeec-----CCEEEE
Q psy8199 550 ILQRISQDMKKITKALTSLITHPKIINFRQKGMI-WAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-----GNTVYL 623 (965)
Q Consensus 550 ~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~G~~-~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-----~~~lR~ 623 (965)
..++++++.+++.+.|+++ ++..+.+.|.+ +++.+. .. ....+.+.|.++||++.|+ .+++|+
T Consensus 305 ~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~--~~-----~~~~~~~~l~~~gi~v~~g~~~~~~~~iRi 373 (398)
T 3ele_A 305 DINAYKENRDLLYEGLTRI----GYHCFKPDGAFYMFVKAL--ED-----DSNAFCEKAKEEDVLIVAADGFGCPGWVRI 373 (398)
T ss_dssp CHHHHHHHHHHHHHHHHHH----TCCEECCSBSSEEEEECS--SS-----CHHHHHHHHHTTTEECEESGGGTCTTEEEE
T ss_pred HHHHHHHHHHHHHHHHHHc----CCeecCCCeeEEEEEEcC--CC-----CHHHHHHHHHHCCEEEeCccccCCCCeEEE
Confidence 6788899999999999876 33444445444 666553 11 1446778889999999875 379999
Q ss_pred eCCcccCHHHHHHHHHhhhccc
Q psy8199 624 MPPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 624 ~p~~~~t~~~i~~~~~~l~~~~ 645 (965)
++. .++++++++++++.+++
T Consensus 374 s~~--~~~e~i~~~l~~l~~~l 393 (398)
T 3ele_A 374 SYC--VDREMIKHSMPAFEKIY 393 (398)
T ss_dssp ECC--SCHHHHHHHHHHHHHHH
T ss_pred Eec--CCHHHHHHHHHHHHHHH
Confidence 964 79999999999887654
|
| >1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-24 Score=248.09 Aligned_cols=340 Identities=15% Similarity=0.070 Sum_probs=234.0
Q ss_pred cCCcccccccccchhc-cCCCCCHHHHHHHHHHHhhcc-ccccCCCCcHHHHHHHHHHHhhcC--CCCCeEEEcCChhHH
Q psy8199 251 FSGKRYLDAISSWWVN-LFGHSNSYINKALKNQLNKLE-HVMLSNLTHKPVIKLSEKLSSLTQ--YKLGHCFYGSDGASA 326 (965)
Q Consensus 251 ~dG~~ylD~~~~~~~~-~lGh~~p~v~~av~~~~~~~~-~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~~~sGseA 326 (965)
.+|+.++|+.++.... .++ .+|++.+++.++++... .+....+..+....+++.+.+..+ .+.+++++++||++|
T Consensus 35 ~~g~~~i~l~~~~~~~~~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~a 113 (406)
T 1xi9_A 35 KKGIKVIRLNIGDPVKFDFQ-PPEHMKEAYCKAIKEGHNYYGDSEGLPELRKAIVEREKRKNGVDITPDDVRVTAAVTEA 113 (406)
T ss_dssp HTTCCCEECCCCCGGGTTCC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHH
T ss_pred HcCCCEEEecCCCCCcCCCC-CCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCHHHEEEcCChHHH
Confidence 4688999998886532 566 57999999999887642 232222345666777777766543 345799999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHH
Q psy8199 327 VEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARC 406 (965)
Q Consensus 327 ~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (965)
++.+++.+. .++++|++.+++||++...+...+. .+..+|........ .
T Consensus 114 l~~~~~~l~--------~~gd~Vl~~~~~~~~~~~~~~~~g~-------------~~~~v~~~~~~~~~----------~ 162 (406)
T 1xi9_A 114 LQLIFGALL--------DPGDEILVPGPSYPPYTGLVKFYGG-------------KPVEYRTIEEEDWQ----------P 162 (406)
T ss_dssp HHHHHHHHC--------CTTCEEEEEESCCHHHHHHHHHTTC-------------EEEEEEEEGGGTSE----------E
T ss_pred HHHHHHHhC--------CCCCEEEEcCCCCccHHHHHHHcCC-------------EEEEeecCCCcCCc----------C
Confidence 999999773 2568899999999997544332221 22233321100000 2
Q ss_pred HHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCc--
Q psy8199 407 AIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWP-- 484 (965)
Q Consensus 407 d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~p-- 484 (965)
|+++|+++++ .++++|++++ ++|++|.+. +++++++|.++|++||+++|+||+|++|++.+.......++ ..
T Consensus 163 d~~~l~~~l~---~~~~~v~i~~-p~nptG~~~-~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~-~~~~ 236 (406)
T 1xi9_A 163 DIDDIRKKIT---DRTKAIAVIN-PNNPTGALY-DKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLT-KDVP 236 (406)
T ss_dssp CHHHHHHHCC---TTEEEEEEES-SCTTTCCCC-CHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHC-SSSC
T ss_pred CHHHHHHhhC---cCceEEEEEC-CCCCCCCCc-CHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHcC-CCce
Confidence 6788888885 3567777777 789999765 77889999999999999999999999886633333343343 22
Q ss_pred cee--eeccccC-CCcccceeee--ecH----HHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc--ccHHHH
Q psy8199 485 DFL--CLSKGIT-GGYLPLSLVM--TTD----KIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK--DNILQR 553 (965)
Q Consensus 485 Div--t~sK~l~-gG~~pig~v~--~~~----~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~--~~~~~~ 553 (965)
|++ ++||.++ .| +++|+++ +++ ++++.+.. ..... ++.++++++++.++|+...+ +.+.++
T Consensus 237 ~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~~~l~~~l~~------~~~~~-~~~~~~~~~a~~~~l~~~~~~~~~~~~~ 308 (406)
T 1xi9_A 237 VIVMNGLSKVYFATG-WRLGYMYFVDPENKLSEVREAIDR------LARIR-LCPNTPAQFAAIAGLTGPMDYLKEYMKK 308 (406)
T ss_dssp EEEEEESTTTTCCGG-GCCEEEEEECTTCTTHHHHHHHHH------HHHHT-CCSCSHHHHHHHHHHHSCCHHHHHHHHH
T ss_pred EEEEeccccccCCCc-cEEEEEEEecCchhHHHHHHHHHH------HHHhh-cCCCHHHHHHHHHHHhCCcHHHHHHHHH
Confidence 344 5799997 45 7999999 888 88887764 11222 67889999999999963221 335566
Q ss_pred HHHHHHHHHHHHHcccCCCceeeeeceeE-EEEEEEeecCccchhhHHHHHHHHHH-HcCcEEeec-------CCEEEEe
Q psy8199 554 ISQDMKKITKALTSLITHPKIINFRQKGM-IWAFDVIIEDPEQIETFSKKFFVAAL-KNELLLRPI-------GNTVYLM 624 (965)
Q Consensus 554 ~~~~~~~l~~~L~~l~~~~~i~~v~g~G~-~~~i~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~-------~~~lR~~ 624 (965)
++++.+++.+.|+++ |++..+.+.|. +..+.+. ... .....++.+.|. ++||++.++ .+++||+
T Consensus 309 ~~~~~~~l~~~L~~~---~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~lRis 381 (406)
T 1xi9_A 309 LKERRDYIYKRLNEI---PGISTTKPQGAFYIFPKIE-VGP---WKNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAV 381 (406)
T ss_dssp HHHHHHHHHHHHHTS---TTEECCCCCBSSEECCEEC-SCS---CSSHHHHHHHHHHHHCEECEEGGGGCGGGTTBEEEE
T ss_pred HHHHHHHHHHHHHhC---CCCeeecCCeeEEEEEecC-ccC---CCCHHHHHHHHHHhCCEEEeCchhcCCCCCCEEEEE
Confidence 777777777777654 55655555544 4444553 100 011346777776 899999874 4689999
Q ss_pred CCcccCHHHHHHHHHhhhccc
Q psy8199 625 PPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 625 p~~~~t~~~i~~~~~~l~~~~ 645 (965)
++ .++++++++++++.+.+
T Consensus 382 ~~--~~~~~i~~~~~~l~~~l 400 (406)
T 1xi9_A 382 FL--PPIEILEEAMDRFEKFM 400 (406)
T ss_dssp CC--SCHHHHHHHHHHHHHHH
T ss_pred ec--CCHHHHHHHHHHHHHHH
Confidence 76 89999999999887654
|
| >2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-24 Score=248.35 Aligned_cols=336 Identities=10% Similarity=0.019 Sum_probs=232.0
Q ss_pred ccccccccchhccCCCCCHHHHHHHHHHHhhc-cccccCCCCcHHHHHHHHHHHhhcC--CCCC-eEEEcCChhHHHHHH
Q psy8199 255 RYLDAISSWWVNLFGHSNSYINKALKNQLNKL-EHVMLSNLTHKPVIKLSEKLSSLTQ--YKLG-HCFYGSDGASAVEVA 330 (965)
Q Consensus 255 ~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~-~~~~~~~~~~~~~~~la~~l~~~~~--~~~~-~v~~~~sGseA~~~A 330 (965)
.++||.++.. .+| .+|.+.+|+.++++.. ..+....+..+....+++.+.+.++ .+.+ ++++++||++|++.+
T Consensus 26 ~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~t~g~~~al~~~ 102 (411)
T 2o0r_A 26 GAVNLGQGFP--DED-GPPKMLQAAQDAIAGGVNQYPPGPGSAPLRRAIAAQRRRHFGVDYDPETEVLVTVGATEAIAAA 102 (411)
T ss_dssp TCEESSCSSC--SSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEEEHHHHHHHHH
T ss_pred CeeeccCcCC--CCC-CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCCceEEEeCCHHHHHHHH
Confidence 4889888753 566 6899999999998762 2333233345666777777776655 3456 899999999999999
Q ss_pred HHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCC--CCCCCCCChhHHHHHHH
Q psy8199 331 LKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDS--RNINKGNSANEIARCAI 408 (965)
Q Consensus 331 l~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~d~ 408 (965)
++.+.. ++++|++.+++||++.......+. .+..+|.... .+. .|+
T Consensus 103 ~~~~~~--------~gd~Vl~~~~~y~~~~~~~~~~g~-------------~~~~v~~~~~~~~~~-----------~d~ 150 (411)
T 2o0r_A 103 VLGLVE--------PGSEVLLIEPFYDSYSPVVAMAGA-------------HRVTVPLVPDGRGFA-----------LDA 150 (411)
T ss_dssp HHHHCC--------TTCEEEEEESCCTTHHHHHHHTTC-------------EEEEEECEEETTEEE-----------CCH
T ss_pred HHHhcC--------CCCEEEEeCCCcHhHHHHHHHcCC-------------EEEEeeccccccCCC-----------CCH
Confidence 987732 468899999999997543322211 2233333210 000 267
Q ss_pred HHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccccc-ccccc----cCCC
Q psy8199 409 FDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKF-FACEH----AEIW 483 (965)
Q Consensus 409 ~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~-~~~~~----~~~~ 483 (965)
++|++++. +++++|++++ ++|++|.+. +.+++++|.++|++||+++|+||+|+++++.|.. ..... .+..
T Consensus 151 ~~l~~~l~---~~~~~v~l~~-~~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~ 225 (411)
T 2o0r_A 151 DALRRAVT---PRTRALIINS-PHNPTGAVL-SATELAAIAEIAVAANLVVITDEVYEHLVFDHARHLPLAGFDGMAERT 225 (411)
T ss_dssp HHHHHHCC---TTEEEEEEES-SCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGE
T ss_pred HHHHHhhc---cCceEEEEeC-CCCCCCCCC-CHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcChhhccCCCCCE
Confidence 88888874 3577777777 789999765 7889999999999999999999999988766642 22222 2223
Q ss_pred cceeeeccccC-CCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc--ccHHHHHHHHHHH
Q psy8199 484 PDFLCLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK--DNILQRISQDMKK 560 (965)
Q Consensus 484 pDivt~sK~l~-gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~--~~~~~~~~~~~~~ 560 (965)
..+.++||.++ .| +|+|++++++++++.+.. ..+..+++.++++++++.++|+...+ +...++++++.++
T Consensus 226 i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~l~~------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~ 298 (411)
T 2o0r_A 226 ITISSAAKMFNCTG-WKIGWACGPAELIAGVRA------AKQYLSYVGGAPFQPAVALALDTEDAWVAALRNSLRARRDR 298 (411)
T ss_dssp EEEEEHHHHTTCTT-TCEEEEECCHHHHHHHHH------HHHHHTSCCCTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred EEEeechhhcCCcc-ceEEEEeeCHHHHHHHHH------HHhhccCCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHH
Confidence 33457899987 56 799999999999887765 23345677888999999999975321 3456677777888
Q ss_pred HHHHHHcccCCCceeeeece-eEEEEEEEeecCccchhhHHHHHHHHHH-HcCcEEeec------------------CCE
Q psy8199 561 ITKALTSLITHPKIINFRQK-GMIWAFDVIIEDPEQIETFSKKFFVAAL-KNELLLRPI------------------GNT 620 (965)
Q Consensus 561 l~~~L~~l~~~~~i~~v~g~-G~~~~i~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~------------------~~~ 620 (965)
+.+.|+++ ++..+.+. |.++++.+. ... ......+.+.|. ++||++.++ .++
T Consensus 299 l~~~L~~~----g~~~~~~~~g~~~~~~~~-~~~---~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~~~~~~~~~~ 370 (411)
T 2o0r_A 299 LAAGLTEI----GFAVHDSYGTYFLCADPR-PLG---YDDSTEFCAALPEKVGVAAIPMSAFCDPAAGQASQQADVWNHL 370 (411)
T ss_dssp HHHHHHHH----TCEECCCCBSSEEEEECG-GGT---CCCHHHHHHHHHHHHSEECEEGGGGSCCC--------CCGGGC
T ss_pred HHHHHHHc----CCEecCCCeeEEEEEecC-CCC---CCCHHHHHHHHHHhCCEEEcChhhhCCCccccccccccCCCCe
Confidence 88888765 33333333 557777764 100 001345667766 689998763 257
Q ss_pred EEEeCCcccCHHHHHHHHHhhhccccc
Q psy8199 621 VYLMPPYILNKNEIQHMTSAIFQTFNE 647 (965)
Q Consensus 621 lR~~p~~~~t~~~i~~~~~~l~~~~~~ 647 (965)
+||+++ .++++++++++++.+.+.+
T Consensus 371 iRis~~--~~~e~i~~~~~~l~~~~~~ 395 (411)
T 2o0r_A 371 VRFTFC--KRDDTLDEAIRRLSVLAER 395 (411)
T ss_dssp EEEECC--SCHHHHHHHHHHHGGGGC-
T ss_pred EEEEec--CCHHHHHHHHHHHHHHHhc
Confidence 999965 5899999999998876543
|
| >2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=7.8e-24 Score=241.17 Aligned_cols=331 Identities=14% Similarity=0.123 Sum_probs=229.6
Q ss_pred CCcccccccccchhccCCC-CCHHHHHHHHHHHhhcccc----ccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHH
Q psy8199 252 SGKRYLDAISSWWVNLFGH-SNSYINKALKNQLNKLEHV----MLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASA 326 (965)
Q Consensus 252 dG~~ylD~~~~~~~~~lGh-~~p~v~~av~~~~~~~~~~----~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA 326 (965)
||++|+|+.++ .++|+ .+|++.+|+.++++..... .......+...+++++++++++. .+.+++ +||++|
T Consensus 44 ~g~~~i~~~~~---~~~~~~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~-~~~i~~-~sG~~a 118 (401)
T 2bwn_A 44 GKQDITVWCGN---DYLGMGQHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQK-EAALVF-SSAYNA 118 (401)
T ss_dssp CEEEEEECSCS---CTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHTTC-SEEEEE-SCHHHH
T ss_pred CCCcEEEeeCC---CcccCCCCHHHHHHHHHHHHHcCCCCCCcCcccCChHHHHHHHHHHHHHhCC-CcEEEE-CCcHHH
Confidence 78999999875 33444 2789999999998774221 11123457789999999999963 344555 778889
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHH
Q psy8199 327 VEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARC 406 (965)
Q Consensus 327 ~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (965)
+..+++++... .+++.|++.++.|++... .....+ ..+..+|. +
T Consensus 119 ~~~~~~~l~~~------~~gd~Vl~~~~~~~~~~~-~~~~~g------------~~~~~v~~-----------------~ 162 (401)
T 2bwn_A 119 NDATLSTLRVL------FPGLIIYSDSLNHASMIE-GIKRNA------------GPKRIFRH-----------------N 162 (401)
T ss_dssp HHHHHHHHHHH------STTCEEEEETTCCHHHHH-HHHHSC------------CCEEEECT-----------------T
T ss_pred HHHHHHHHhcC------CCCCEEEECchhhHHHHH-HHHHcC------------CeEEEEcC-----------------C
Confidence 99998865332 245678887776655432 221111 13344443 2
Q ss_pred HHHHHHHHHHhCC-CcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEecccc--CCCcccccccccccCC-
Q psy8199 407 AIFDLEILLKKNH-NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAV--GCGRTGKFFACEHAEI- 482 (965)
Q Consensus 407 d~~~le~~l~~~~-~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t--g~gr~G~~~~~~~~~~- 482 (965)
|+++|++++++.. +++++|++++ ++|++|.+.+ +++|.++|++||+++|+||+|+ .||+.|..+. ...++
T Consensus 163 d~~~le~~l~~~~~~~~~~v~~~~-~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~g~~~~-~~~~~~ 236 (401)
T 2bwn_A 163 DVAHLRELIAADDPAAPKLIAFES-VYSMDGDFGP----IKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVA-ERDGLM 236 (401)
T ss_dssp CHHHHHHHHHHSCTTSCEEEEEES-BCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHH-HHHTCG
T ss_pred CHHHHHHHHHhhccCCceEEEEec-CcCCCCCcCC----HHHHHHHHHHcCCEEEEeccccccccCCCCceee-eccCcc
Confidence 5678888887543 4678899999 8999999887 8999999999999999999998 3566665443 44444
Q ss_pred -Cccee--eeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc---ccHHHHHHH
Q psy8199 483 -WPDFL--CLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK---DNILQRISQ 556 (965)
Q Consensus 483 -~pDiv--t~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~---~~~~~~~~~ 556 (965)
.+|++ +|||++++. -|++++++++++.+... ...+. .+.+.++++++++.++|+.+.+ ++..+++++
T Consensus 237 ~~~~i~~~s~sK~~~~~---GG~~~~~~~~~~~l~~~--~~~~~--~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~ 309 (401)
T 2bwn_A 237 HRIDIFNGTLAKAYGVF---GGYIAASARMVDAVRSY--APGFI--FSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQM 309 (401)
T ss_dssp GGCSEEEEESSSTTCSC---CEEEEECHHHHHHHHHH--CHHHH--TSBCCCHHHHHHHHHHHHHHTSHHHHHHHHHHHH
T ss_pred ccCcEEEeechhhccCC---CCEEecCHHHHHHHHHh--CcCce--ecCCCCHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 24544 899999741 27788888888876531 11111 2223477899999999998865 357888899
Q ss_pred HHHHHHHHHHcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHH-HcCcEEeec-------C-CEEEEeCCc
Q psy8199 557 DMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAAL-KNELLLRPI-------G-NTVYLMPPY 627 (965)
Q Consensus 557 ~~~~l~~~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~-------~-~~lR~~p~~ 627 (965)
+.+++.+.|+++ . +..+.+.|.++.+.+. + ......+.+.|. ++||.+.|. + +++|++++.
T Consensus 310 ~~~~l~~~L~~~-g---~~~~~~~~~~~~~~~~--~----~~~~~~~~~~L~~~~gi~v~~~~~~~~~~~~~~iRis~~~ 379 (401)
T 2bwn_A 310 HAKVLKMRLKAL-G---MPIIDHGSHIVPVVIG--D----PVHTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSP 379 (401)
T ss_dssp HHHHHHHHHHHH-T---CCBCCCSSSCEEEECC--C----HHHHHHHHHHHHHHHCEECCEECTTTSCTTCCEEEECCCT
T ss_pred HHHHHHHHHHHC-C---CcccCCCCCeEEEEeC--C----hHHHHHHHHHHHhcCCEEEeecCCCCCCCCCceEEEEeeC
Confidence 999999999876 2 2222344557777663 1 112446778885 789999763 2 489999999
Q ss_pred ccCHHHHHHHHHhhhcccc
Q psy8199 628 ILNKNEIQHMTSAIFQTFN 646 (965)
Q Consensus 628 ~~t~~~i~~~~~~l~~~~~ 646 (965)
.+++++++++++++.+.+.
T Consensus 380 ~~t~~~i~~~~~~l~~~~~ 398 (401)
T 2bwn_A 380 VHDLKQIDGLVHAMDLLWA 398 (401)
T ss_dssp TSCHHHHHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHHHHHHHH
Confidence 8999999999999876543
|
| >3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.6e-24 Score=243.00 Aligned_cols=324 Identities=13% Similarity=0.081 Sum_probs=224.8
Q ss_pred cCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHH
Q psy8199 251 FSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVA 330 (965)
Q Consensus 251 ~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~A 330 (965)
.+|+.+|||.++.. +++ .+|+|.+|+.++++..+.. ..+++.....++.++++++++.+.+++++++||++|++.+
T Consensus 23 ~~~~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~-~~~y~~~~~~~lr~~la~~~g~~~~~i~~t~g~~~al~~~ 98 (360)
T 3hdo_A 23 PDIASWIKLNTNEN--PYP-PSPEVVKAILEELGPDGAA-LRIYPSASSQKLREVAGELYGFDPSWIIMANGSDEVLNNL 98 (360)
T ss_dssp SCCTTSEECSSCCC--SSC-CCHHHHHHHHHHHTTTCGG-GGSCCCSSCHHHHHHHHHHHTCCGGGEEEESSHHHHHHHH
T ss_pred ccccceeeccCCCC--CCC-CCHHHHHHHHHHHhcccch-hhcCCCCchHHHHHHHHHHhCcCcceEEEcCCHHHHHHHH
Confidence 57889999988743 455 6899999999998773111 1223333346888888888876678999999999999999
Q ss_pred HHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHH
Q psy8199 331 LKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFD 410 (965)
Q Consensus 331 l~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 410 (965)
++.+.. ++++|++.+++|+++.......+. .+..+|..... ++++
T Consensus 99 ~~~l~~--------~gd~Vl~~~p~~~~~~~~~~~~g~-------------~~~~v~~~~~~--------------~~~~ 143 (360)
T 3hdo_A 99 IRAFAA--------EGEEIGYVHPSYSYYGTLAEVQGA-------------RVRTFGLTGDF--------------RIAG 143 (360)
T ss_dssp HHHHCC--------TTCEEEEESSSCTHHHHHHHHHTC-------------EEEEECBCTTS--------------SBTT
T ss_pred HHHHhC--------CCCEEEEcCCChHHHHHHHHHCCC-------------EEEEeeCCCCC--------------CHHH
Confidence 997732 468899999999987544333222 23344432111 1112
Q ss_pred HHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcceeeec
Q psy8199 411 LEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS 490 (965)
Q Consensus 411 le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~s 490 (965)
+ .+....+ +|+++. ++|++|.+.+ +++++++|+++|+++|+||+|++|+..+.....+..+....+.++|
T Consensus 144 l---~~~~~~~--~v~i~~-p~nptG~~~~----~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~s 213 (360)
T 3hdo_A 144 F---PERYEGK--VFFLTT-PNAPLGPSFP----LEYIDELARRCAGMLVLDETYAEFAESNALELVRRHENVVVTRTLS 213 (360)
T ss_dssp C---CSSBCSS--EEEEES-SCTTTCCCCC----HHHHHHHHHHBSSEEEEECTTGGGSSCCCTHHHHHCSSEEEEEEST
T ss_pred H---HhhcCCC--EEEEeC-CCCCCCCCcC----HHHHHHHHHHCCCEEEEECChHhhCCcchhHHhccCCCEEEEecch
Confidence 2 1111222 444444 5899999887 7789999999999999999999874332222222333334455799
Q ss_pred cccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHHHccc
Q psy8199 491 KGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN-KDNILQRISQDMKKITKALTSLI 569 (965)
Q Consensus 491 K~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~-~~~~~~~~~~~~~~l~~~L~~l~ 569 (965)
|.++.+++++|++++++++++.+.. ...+++.|+++++++.++|+..+ -+...++++++.+++.+.|+++
T Consensus 214 K~~g~~G~r~G~~~~~~~~~~~~~~--------~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~- 284 (360)
T 3hdo_A 214 KSYSLAGMRIGLAIARPEVIAALDK--------IRDHYNLDRLAQAACVAALRDQAYLSECCRRIRETREWFTTELRSI- 284 (360)
T ss_dssp TTTSCTTSCCEEEECCHHHHHHHHH--------HSCSCCSCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred HhhcCCccceeeEeeCHHHHHHHHH--------hCCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC-
Confidence 9986333899999999999988875 22457889999999999997421 1335566667777777777654
Q ss_pred CCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecC-----CEEEEeCCcccCHHHHHHHHHhhhcc
Q psy8199 570 THPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG-----NTVYLMPPYILNKNEIQHMTSAIFQT 644 (965)
Q Consensus 570 ~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~-----~~lR~~p~~~~t~~~i~~~~~~l~~~ 644 (965)
++...++.|.++.+.+. . .....+.+.|.++||+++++. +++|++.+ ++++++++++++.+.
T Consensus 285 ---~~~~~~~~~~~~~~~~~--~-----~~~~~l~~~l~~~gi~v~~~~~~~~~~~iRis~~---~~~e~~~l~~al~~~ 351 (360)
T 3hdo_A 285 ---GYDVIPSQGNYLFATPP--D-----RDGKRVYDGLYARKVLVRHFSDPLLAHGMRISIG---TREEMEQTLAALKEI 351 (360)
T ss_dssp ---TCEECCCSSSEEEEECT--T-----CCHHHHHHHHHHTTEECBCCCSTTTTTSEEEECC---CHHHHHHHHHHHHHH
T ss_pred ---CCEEcCCCccEEEEECC--C-----CCHHHHHHHHHHCCEEEEECCCCCCCCEEEEEcC---CHHHHHHHHHHHHHH
Confidence 45556778888877653 1 114467788999999998743 68999943 899999999988764
Q ss_pred c
Q psy8199 645 F 645 (965)
Q Consensus 645 ~ 645 (965)
.
T Consensus 352 ~ 352 (360)
T 3hdo_A 352 G 352 (360)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.8e-24 Score=247.06 Aligned_cols=333 Identities=11% Similarity=0.092 Sum_probs=229.0
Q ss_pred cCCcccccccccchhccCCCCCHHHHHHHHHHHhhc-cccccCCCCcHHHHHHHHHHHhhcC--CCCCeEEEcCChhHHH
Q psy8199 251 FSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKL-EHVMLSNLTHKPVIKLSEKLSSLTQ--YKLGHCFYGSDGASAV 327 (965)
Q Consensus 251 ~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~-~~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~~~sGseA~ 327 (965)
.+|+.++||.++.. .+| .+|++.+|+ ++++.. ..+....+..+....+++.+.+..+ .+.+++++++||++|+
T Consensus 40 ~~g~~~i~l~~~~~--~~~-~~~~v~~a~-~~l~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~t~a~ 115 (409)
T 2gb3_A 40 KRGVRIHHLNIGQP--DLK-TPEVFFERI-YENKPEVVYYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAI 115 (409)
T ss_dssp HTTCEEEECSSCCC--CSC-CCTHHHHHH-HHTCCSSCCCCCTTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHH
T ss_pred hcCCCEEeccCCCC--CCC-CCHHHHHHH-HHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCHHHEEEeCCHHHHH
Confidence 46899999988754 466 478999999 888653 1232222345666677777766443 3457899999999999
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHH
Q psy8199 328 EVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCA 407 (965)
Q Consensus 328 ~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 407 (965)
+.+++.+. .++++|++.+++||++.......+. .+..+|...... +. .
T Consensus 116 ~~~~~~~~--------~~gd~Vl~~~~~~~~~~~~~~~~g~-------------~~~~v~~~~~~~---------~~-~- 163 (409)
T 2gb3_A 116 LFSFAVIA--------NPGDEILVLEPFYANYNAFAKIAGV-------------KLIPVTRRMEEG---------FA-I- 163 (409)
T ss_dssp HHHHHHHC--------CTTCEEEEEESCCTHHHHHHHHHTC-------------EEEEEECCGGGT---------SC-C-
T ss_pred HHHHHHhC--------CCCCEEEEcCCCchhHHHHHHHcCC-------------EEEEeccCCCCC---------Cc-c-
Confidence 99999773 2568899999999987543322221 233343321000 00 0
Q ss_pred HHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCC-Ccce
Q psy8199 408 IFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEI-WPDF 486 (965)
Q Consensus 408 ~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~-~pDi 486 (965)
+++|++++. +++++|++++ ++|++|.+. +.+++++|.++|++||+++|+||+|+++++.|.+... ..++ ..|+
T Consensus 164 ~~~l~~~l~---~~~~~v~~~~-p~nptG~~~-~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~~~~~~-~~~~~~~~i 237 (409)
T 2gb3_A 164 PQNLESFIN---ERTKGIVLSN-PCNPTGVVY-GKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASA-LSIESDKVV 237 (409)
T ss_dssp CTTGGGGCC---TTEEEEEEES-SCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCG-GGSCCTTEE
T ss_pred HHHHHHhhC---cCCeEEEECC-CCCCCCCCc-CHHHHHHHHHHHHHcCCEEEEECcccccccCCCCCCc-cccCCCCEE
Confidence 355666553 3577777777 789999865 6789999999999999999999999988766643332 2233 3466
Q ss_pred e--eeccccC-CCcccceeeeecH-HHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh--cccHHHHHHHHHHH
Q psy8199 487 L--CLSKGIT-GGYLPLSLVMTTD-KIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN--KDNILQRISQDMKK 560 (965)
Q Consensus 487 v--t~sK~l~-gG~~pig~v~~~~-~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~--~~~~~~~~~~~~~~ 560 (965)
+ ++||.++ .| +++|++++++ ++++.+.. .....+ +.++++++++.++|+... -+.+.++++++.++
T Consensus 238 ~~~s~sK~~g~~G-~r~G~~~~~~~~l~~~l~~------~~~~~~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~ 309 (409)
T 2gb3_A 238 VIDSVSKKFSACG-ARVGCLITRNEELISHAMK------LAQGRL-APPLLEQIGSVGLLNLDDSFFDFVRETYRERVET 309 (409)
T ss_dssp EEEESTTTTTCGG-GCCEEEECSCHHHHHHHHH------HHHHSC-CCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred EEecchhccCCcc-ceEEEEEECcHHHHHHHHH------HHhccC-CCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 5 6899997 45 7999999998 88887764 223344 789999999999885321 13356667777888
Q ss_pred HHHHHHcccCCCceee-eece-eEEEEEEEeecCccchhhHHHHHHHHHHHc------CcEEeec----------CCEEE
Q psy8199 561 ITKALTSLITHPKIIN-FRQK-GMIWAFDVIIEDPEQIETFSKKFFVAALKN------ELLLRPI----------GNTVY 622 (965)
Q Consensus 561 l~~~L~~l~~~~~i~~-v~g~-G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~------Gi~~~~~----------~~~lR 622 (965)
+.+.|+++ ++.. +.+. |.+..+.+. . .....+.+.|.++ ||++.|+ .+++|
T Consensus 310 l~~~L~~~----g~~~~~~~~~~~~~~~~~~--~-----~~~~~l~~~l~~~~~~~~~gi~v~~g~~f~~~~~~~~~~iR 378 (409)
T 2gb3_A 310 VLKKLEEH----GLKRFTKPSGAFYITAELP--V-----EDAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIR 378 (409)
T ss_dssp HHHHHHHT----TCCCBCCCSBSSEEEEECS--S-----SCHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEE
T ss_pred HHHHHHHc----CceeeeCCCeeEEEEEEeC--C-----CCHHHHHHHHHhccccccCcEEEeCchHhCCCCCCCCCEEE
Confidence 88888765 2322 2333 555555552 1 1134677888877 9999874 36899
Q ss_pred EeCCcccCHHHHHHHHHhhhcccc
Q psy8199 623 LMPPYILNKNEIQHMTSAIFQTFN 646 (965)
Q Consensus 623 ~~p~~~~t~~~i~~~~~~l~~~~~ 646 (965)
++++ .++++++++++++.+.+.
T Consensus 379 is~~--~~~e~i~~~~~~l~~~l~ 400 (409)
T 2gb3_A 379 IACV--LEKDLLSRAIDVLMEGLK 400 (409)
T ss_dssp EECC--SCHHHHHHHHHHHHHHHH
T ss_pred EEeC--CCHHHHHHHHHHHHHHHH
Confidence 9977 899999999998876543
|
| >1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.1e-24 Score=241.52 Aligned_cols=315 Identities=12% Similarity=0.107 Sum_probs=219.4
Q ss_pred CcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHH
Q psy8199 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALK 332 (965)
Q Consensus 253 G~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~ 332 (965)
.+.++|+.+|. +++|+. |.+ + +... ..|+.....++.+.++++++.+.++|++++||++|++.+++
T Consensus 28 ~~~~i~l~~~~--~~~~~~-~~v--a----~~~~-----~~Y~~~~~~~lr~~la~~~~~~~~~v~~~~G~~~ai~~~~~ 93 (356)
T 1fg7_A 28 GNGDVWLNANE--YPTAVE-FQL--T----QQTL-----NRYPECQPKAVIENYAQYAGVKPEQVLVSRGADEGIELLIR 93 (356)
T ss_dssp TTCSEECSSCC--CSSCCC-CCC--C----CCCT-----TSCCCSSCHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHH
T ss_pred CCceEEeeCCC--CCCCCC-HhH--h----hhhh-----ccCCCccHHHHHHHHHHHhCCChHHEEEcCCHHHHHHHHHH
Confidence 35789998884 688974 555 2 2222 22333335678888888887667899999999999999999
Q ss_pred HHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHH
Q psy8199 333 MSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLE 412 (965)
Q Consensus 333 ~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le 412 (965)
.+.. +++++|++.+++||++...+...+. .+..+|..... . .|+++|+
T Consensus 94 ~~~~-------~g~d~Vl~~~p~~~~~~~~~~~~g~-------------~~~~v~~~~~~-~-----------~d~~~l~ 141 (356)
T 1fg7_A 94 AFCE-------PGKDAILYCPPTYGMYSVSAETIGV-------------ECRTVPTLDNW-Q-----------LDLQGIS 141 (356)
T ss_dssp HHCC-------TTTCEEEECSSSCTHHHHHHHHHTC-------------EEEECCCCTTS-C-----------CCHHHHH
T ss_pred HHhC-------CCCCEEEEeCCChHHHHHHHHHcCC-------------EEEEeeCCCCC-C-----------CCHHHHH
Confidence 7742 2338899999999998654433222 22333332111 1 2567777
Q ss_pred HHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccc-cccCCCcceeeecc
Q psy8199 413 ILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFAC-EHAEIWPDFLCLSK 491 (965)
Q Consensus 413 ~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~-~~~~~~pDivt~sK 491 (965)
+++. ++.+|+++. ++|++|.+. +.+++++|.++|+ +|+++|+||+|++|++....... +.++....+.+|||
T Consensus 142 ~~i~----~~~~v~l~~-p~nptG~~~-~~~~l~~l~~~~~-~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~s~sK 214 (356)
T 1fg7_A 142 DKLD----GVKVVYVCS-PNNPTGQLI-NPQDFRTLLELTR-GKAIVVADEAYIEFCPQASLAGWLAEYPHLAILRTLSK 214 (356)
T ss_dssp TSCT----TEEEEEEES-SCTTTCCCC-CHHHHHHHHHHHT-TTCEEEEECTTGGGSGGGCSGGGTTTCTTEEEEEESSS
T ss_pred HHhc----CCCEEEEeC-CCCCCCCCC-CHHHHHHHHHhCC-CCCEEEEEccchhhcCCCcHHHHHhhCCCEEEEecchH
Confidence 6663 456666666 689999775 6888999999999 99999999999988632222222 22222233458999
Q ss_pred ccC-CCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh---cccHHHHHHHHHHHHHHHHHc
Q psy8199 492 GIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN---KDNILQRISQDMKKITKALTS 567 (965)
Q Consensus 492 ~l~-gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~---~~~~~~~~~~~~~~l~~~L~~ 567 (965)
.++ .| +++|++++++++++.+.. ...+++.|+++++++.++|+... -+...++++++++++.+.|++
T Consensus 215 ~~g~~G-~r~G~~~~~~~~~~~l~~--------~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 285 (356)
T 1fg7_A 215 AFALAG-LRCGFTLANEEVINLLMK--------VIAPYPLSTPVADIAAQALSPQGIVAMRERVAQIIAEREYLIAALKE 285 (356)
T ss_dssp TTCCGG-GCCEEEEECHHHHHHHHH--------HSCSSCSCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcCch-hhhEEEEeCHHHHHHHHH--------hcCCCCCCHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 987 55 899999999999988865 23456789999999999986432 233456666777777777765
Q ss_pred ccCCCce-eeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEee-c-----CCEEEEeCCcccCHHHHHHHHHh
Q psy8199 568 LITHPKI-INFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRP-I-----GNTVYLMPPYILNKNEIQHMTSA 640 (965)
Q Consensus 568 l~~~~~i-~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~-~-----~~~lR~~p~~~~t~~~i~~~~~~ 640 (965)
+ +++ ...++.|+++.+.+. + ...+.+.|.++||++++ + .+++|++++ +++++++++++
T Consensus 286 ~---~~~~~~~~~~~~~~~~~~~--~-------~~~l~~~L~~~gI~v~~~g~~~~~~~~iRis~~---~~~e~~~~~~~ 350 (356)
T 1fg7_A 286 I---PCVEQVFDSETNYILARFK--A-------SSAVFKSLWDQGIILRDQNKQPSLSGCLRITVG---TREESQRVIDA 350 (356)
T ss_dssp S---TTEEEECCCSSSEEEEEET--T-------HHHHHHHHHHTTEECEECTTSTTCTTEEEEECC---CHHHHHHHHHH
T ss_pred C---CCceEECCCCCeEEEEECC--C-------HHHHHHHHHHCCEEEEECCCCCCCCCeEEEEeC---CHHHHHHHHHH
Confidence 4 333 345667888877663 1 34677888999999998 3 258999965 68899999988
Q ss_pred hhcc
Q psy8199 641 IFQT 644 (965)
Q Consensus 641 l~~~ 644 (965)
+.+.
T Consensus 351 l~~~ 354 (356)
T 1fg7_A 351 LRAE 354 (356)
T ss_dssp HHTC
T ss_pred HHhh
Confidence 8653
|
| >1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=8.5e-24 Score=239.82 Aligned_cols=337 Identities=14% Similarity=0.120 Sum_probs=235.3
Q ss_pred CCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccC---CCCc--HHHHHHHHHHHhhcCCCCCeEEEcCChhHH
Q psy8199 252 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLS---NLTH--KPVIKLSEKLSSLTQYKLGHCFYGSDGASA 326 (965)
Q Consensus 252 dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~---~~~~--~~~~~la~~l~~~~~~~~~~v~~~~sGseA 326 (965)
++..|+|.. ..|+.+|++.+|+.+++....+.+.. .++. +...++.+.++++++.+.+++++++||++|
T Consensus 15 ~~~i~l~~~------~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a 88 (390)
T 1elu_A 15 ANKTYFNFG------GQGILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFNVDPNTITITDNVTTG 88 (390)
T ss_dssp TTSEECCTT------TCCCCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTTSCGGGEEEESSHHHH
T ss_pred CCeEEecCC------ccCCCCHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHcCCCHHHEEEeCChHHH
Confidence 355667653 26788999999999998764321111 2222 567889999999997666799999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCC-CCCCCCCCChhHHHH
Q psy8199 327 VEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPD-SRNINKGNSANEIAR 405 (965)
Q Consensus 327 ~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 405 (965)
++.+++.++. .++++|++.+++||++......... .....+..+|.+. ....
T Consensus 89 ~~~~~~~~~~-------~~gd~vl~~~~~~~~~~~~~~~~~~---------~~g~~~~~v~~~~~~~~~----------- 141 (390)
T 1elu_A 89 CDIVLWGLDW-------HQGDEILLTDCEHPGIIAIVQAIAA---------RFGITYRFFPVAATLNQG----------- 141 (390)
T ss_dssp HHHHHHHSCC-------CTTCEEEEETTCCHHHHHHHHHHHH---------HHCCEEEEECCGGGSSSS-----------
T ss_pred HHHHHhCCCC-------CCCCEEEEecCcccHHHHHHHHHHH---------HhCcEEEEEcCCCCCCcc-----------
Confidence 9999987731 2568999999999997432111000 0011233444321 0111
Q ss_pred HHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHH----hcCCeEEEeccccCCCcccccccccccC
Q psy8199 406 CAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICN----NYNIHLIADEIAVGCGRTGKFFACEHAE 481 (965)
Q Consensus 406 ~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~----~~g~llI~DEv~tg~gr~G~~~~~~~~~ 481 (965)
.|+++|++++. +++++|++++ ++|++|.+.+ +++|.++|+ +||+++|+||+|+ +|... .....
T Consensus 142 ~d~~~l~~~i~---~~~~~v~~~~-~~nptG~~~~----~~~i~~l~~~~~~~~~~~li~Dea~~-~g~~~----~~~~~ 208 (390)
T 1elu_A 142 DAAAVLANHLG---PKTRLVILSH-LLWNTGQVLP----LAEIMAVCRRHQGNYPVRVLVDGAQS-AGSLP----LDFSR 208 (390)
T ss_dssp CHHHHHHTTCC---TTEEEEEEES-BCTTTCCBCC----HHHHHHHHHHCCSSSCCEEEEECTTT-BTTBC----CCTTT
T ss_pred chHHHHHHhcC---CCceEEEEec-cccCCceecC----HHHHHHHHhhhhhhcCcEEEEEcccc-cCCcC----CChhh
Confidence 37888887774 4678888888 8999999887 999999999 9999999999996 65432 12223
Q ss_pred CCcceee--eccccCCCcccceeeeecHHHHHhhhccC-Ccc---------cc------cccCCCCCCHHHHHHHHHHHH
Q psy8199 482 IWPDFLC--LSKGITGGYLPLSLVMTTDKIYNSIYYKN-NIN---------IF------LHSHSYSGNPLACCAALATLE 543 (965)
Q Consensus 482 ~~pDivt--~sK~l~gG~~pig~v~~~~~i~~~~~~~~-~~~---------~~------~~~~t~~~~~~~~aaa~a~L~ 543 (965)
..+|+++ ++|.+.|| +++|++++++++++.+.... ... ++ ....+.+.++++++++.++|+
T Consensus 209 ~~~d~~~~s~~K~~~~~-~g~G~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~ 287 (390)
T 1elu_A 209 LEVDYYAFTGHKWFAGP-AGVGGLYIHGDCLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQ 287 (390)
T ss_dssp SCCSEEEEESSSTTCCC-TTCEEEEECTTTGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHH
T ss_pred cCCCEEEccccccccCC-CceEEEEECHHhHhhcCCccccCCcccccccCcccccccchHhhCCCCCCHHHHHHHHHHHH
Confidence 4578886 89977776 68999999998887765310 000 00 011223457888888888888
Q ss_pred HHhccc----HHHHHHHHHHHHHHHHHcccCCCceeee---eceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEee
Q psy8199 544 IFNKDN----ILQRISQDMKKITKALTSLITHPKIINF---RQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRP 616 (965)
Q Consensus 544 ~~~~~~----~~~~~~~~~~~l~~~L~~l~~~~~i~~v---~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~ 616 (965)
.+.+.+ ..++++++.+++.+.|+++ +++..+ ++.|.|+.+.+. ++. ....+.+.|.++||.+.+
T Consensus 288 ~l~~~~~~~~~~~~~~~~~~~l~~~L~~~---~g~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~l~~~gi~v~~ 358 (390)
T 1elu_A 288 LHQRQGTAEERYQAICQRSEFLWRGLNQL---PHVHCLATSAPQAGLVSFTVD--SPL----GHRAIVQKLEEQRIYLRT 358 (390)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHHHHHHHHS---TTEEESCSSCCSSSEEEEEEC--SSS----CHHHHHHHHHHTTEECEE
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHHHhc---CCcEEecCccccccEEEEEcC--CCC----CHHHHHHHHHHCCEEEEe
Confidence 775533 5667777788888877664 455444 567888888773 111 134677888899999998
Q ss_pred cC--CEEEEeCCcccCHHHHHHHHHhhhcc
Q psy8199 617 IG--NTVYLMPPYILNKNEIQHMTSAIFQT 644 (965)
Q Consensus 617 ~~--~~lR~~p~~~~t~~~i~~~~~~l~~~ 644 (965)
+. +++|++++...++++++++++++.+.
T Consensus 359 ~~~~~~iRis~~~~~~~~~i~~~~~~l~~~ 388 (390)
T 1elu_A 359 IADPDCIRACCHYITDEEEINHLLARLADF 388 (390)
T ss_dssp ETTTTEEEEECCTTCCHHHHHHHHHHHTTC
T ss_pred cCCCCeEEEecccCCCHHHHHHHHHHHHhh
Confidence 74 79999999999999999999988754
|
| >3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.8e-23 Score=239.84 Aligned_cols=347 Identities=11% Similarity=0.106 Sum_probs=233.0
Q ss_pred CcccccccccchhccCCCCCHHHHHHHHHHHhhcc---ccccCCCCcHHHHHHHHHHHhhcCCC--C-CeEEEcCChhHH
Q psy8199 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLE---HVMLSNLTHKPVIKLSEKLSSLTQYK--L-GHCFYGSDGASA 326 (965)
Q Consensus 253 G~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~---~~~~~~~~~~~~~~la~~l~~~~~~~--~-~~v~~~~sGseA 326 (965)
+..+|||..|.. .++ .+|++.+|+.+++.... .|....+..+....+++.+.+.++.. . +++++++||++|
T Consensus 27 ~~~~i~l~~g~~--~~~-~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~i~~~~g~~~a 103 (422)
T 3fvs_A 27 EHDVVNLGQGFP--DFP-PPDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGA 103 (422)
T ss_dssp TSCCEECCCSSC--SSC-CCHHHHHHHHHHHHSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHH
T ss_pred cCCceEeCCCCC--CCC-CCHHHHHHHHHHHhCCCccCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCcEEEECChHHH
Confidence 457899988753 343 68999999999987632 33323344567778888887766533 3 589999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCC---CCCCCCCChhHH
Q psy8199 327 VEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDS---RNINKGNSANEI 403 (965)
Q Consensus 327 ~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 403 (965)
++.+++.+. .++++|++.+++||++.......+. .+..+|.... .+.. .....+
T Consensus 104 ~~~~~~~~~--------~~gd~vl~~~p~~~~~~~~~~~~g~-------------~~~~~~~~~~~~~~G~~--~~~~~~ 160 (422)
T 3fvs_A 104 LFTAFQALV--------DEGDEVIIIEPFFDCYEPMTMMAGG-------------RPVFVSLKPGPIQNGEL--GSSSNW 160 (422)
T ss_dssp HHHHHHHHC--------CTTCEEEEEESCCTTHHHHHHHTTC-------------EEEEEECBCCCCCSSSC--CBGGGS
T ss_pred HHHHHHHHc--------CCCCEEEEcCCCchhhHHHHHHcCC-------------EEEEEeccccccccccc--ccccCC
Confidence 999999773 2568899999999997544333322 2223332210 0000 000000
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccc-cccccccC-
Q psy8199 404 ARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK-FFACEHAE- 481 (965)
Q Consensus 404 ~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~-~~~~~~~~- 481 (965)
..|+++|++++. +++++|++++ ++|++|.+. +++.+++|.++|++||+++|+||+|++|++.|. ......+.
T Consensus 161 -~~d~~~l~~~~~---~~~~~v~~~~-p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~ 234 (422)
T 3fvs_A 161 -QLDPMELAGKFT---SRTKALVLNT-PNNPLGKVF-SREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPG 234 (422)
T ss_dssp -BCCHHHHHTTCC---TTEEEEEEES-SCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTT
T ss_pred -CCCHHHHHhhcC---CCceEEEECC-CCCCCCcCC-CHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCChhhccc
Confidence 026788887764 3577777777 799999876 788899999999999999999999999877775 22222222
Q ss_pred ---CCcceeeeccccC-CCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHH-----hc----c
Q psy8199 482 ---IWPDFLCLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIF-----NK----D 548 (965)
Q Consensus 482 ---~~pDivt~sK~l~-gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~-----~~----~ 548 (965)
....+.++||.++ .| +++|++++++++++.+.. ..+..+++.++++++++.++|+.. .. +
T Consensus 235 ~~~~~i~~~S~sK~~g~~G-~r~G~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~ 307 (422)
T 3fvs_A 235 MWERTLTIGSAGKTFSATG-WKVGWVLGPDHIMKHLRT------VHQNSVFHCPTQSQAAVAESFEREQLLFRQPSSYFV 307 (422)
T ss_dssp TGGGEEEEEEHHHHHTCGG-GCCEEEECCHHHHHHHHH------HHHTTTCCCCHHHHHHHHHHHHHHHHTTTCTTCHHH
T ss_pred ccCcEEEEecchhccCCcc-ceEEEEEeCHHHHHHHHH------HHhhccCCCCcHHHHHHHHHHhhccccccchHHHHH
Confidence 2233447899997 45 899999999999888765 345678889999999999999751 11 2
Q ss_pred cHHHHHHHHHHHHHHHHHcccCCCceeee-eceeEEEEEEEeecCc--------cchhhHHHHHHHHH-HHcCcEEeec-
Q psy8199 549 NILQRISQDMKKITKALTSLITHPKIINF-RQKGMIWAFDVIIEDP--------EQIETFSKKFFVAA-LKNELLLRPI- 617 (965)
Q Consensus 549 ~~~~~~~~~~~~l~~~L~~l~~~~~i~~v-~g~G~~~~i~~~~~~~--------~~~~~~~~~~~~~l-~~~Gi~~~~~- 617 (965)
...++++++.+++.+.|+++ ++..+ +..|.++.+.+. ... ........++...+ .++||++.|+
T Consensus 308 ~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~ 382 (422)
T 3fvs_A 308 QFPQAMQRCRDHMIRSLQSV----GLKPIIPQGSYFLITDIS-DFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVS 382 (422)
T ss_dssp HHHHHHHHHHHHHHHHHHTT----TCEEEBCSBSSEEEEECH-HHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGG
T ss_pred HHHHHHHHHHHHHHHHHHHc----CCeecCCCeeeEEEEech-hhcccccccccccccccHHHHHHHHHHhcCEEEeCcH
Confidence 34556666677777777654 44433 445666666653 100 00000133555654 4679998872
Q ss_pred -----------CCEEEEeCCcccCHHHHHHHHHhhhccc
Q psy8199 618 -----------GNTVYLMPPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 618 -----------~~~lR~~p~~~~t~~~i~~~~~~l~~~~ 645 (965)
.+++||+ +..++++++++++++.+.+
T Consensus 383 ~f~~~~~~~~~~~~iRis--~~~~~e~i~~~l~~l~~~l 419 (422)
T 3fvs_A 383 IFYSVPHQKHFDHYIRFC--FVKDEATLQAMDEKLRKWK 419 (422)
T ss_dssp GGSCHHHHTTSCSEEEEE--CCCCHHHHHHHHHHHHHHH
T ss_pred HhcCCcCCCCCCCeEEEE--ecCCHHHHHHHHHHHHHHH
Confidence 3689999 5569999999999887643
|
| >2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=9.5e-25 Score=248.13 Aligned_cols=343 Identities=10% Similarity=-0.015 Sum_probs=225.1
Q ss_pred ecCCcccccccccchhccCC--CCCHHHHHHHHHHHhhc--cccccCCCCcHHHHHHHHHHHhhcCCCCCeEEE--cCCh
Q psy8199 250 TFSGKRYLDAISSWWVNLFG--HSNSYINKALKNQLNKL--EHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFY--GSDG 323 (965)
Q Consensus 250 d~dG~~ylD~~~~~~~~~lG--h~~p~v~~av~~~~~~~--~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~--~~sG 323 (965)
+..|..++|+.+|.+..+.| +.+|++.+|+.++++.. ..|....+..+.+..+++.+... +...++|+| ++||
T Consensus 22 ~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~-~~~~~~v~~~~~~g~ 100 (394)
T 2ay1_A 22 ADPRQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETETTKTYAGLSGEPEFQKAMGELILGD-GLKSETTATLATVGG 100 (394)
T ss_dssp HCCCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCSSCCHHHHHHHHHHHHGG-GCCGGGEEEEEEEHH
T ss_pred hCCCccccccccceeeCCCCCccCcHHHHHHHHHhcCCcccCCCCCCCCcHHHHHHHHHHHhCC-CCCcccEEEEecCCc
Confidence 34577899999987655566 56899999999887652 11221222334444444444322 114678999 9999
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCC-CCCCCCCCChhH
Q psy8199 324 ASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPD-SRNINKGNSANE 402 (965)
Q Consensus 324 seA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 402 (965)
++|++.++++++.+ .++++|++.+++||++.......+. .+..+|... ....
T Consensus 101 ~~a~~~~~~~~~~~------~~gd~vl~~~p~~~~~~~~~~~~g~-------------~~~~~~~~~~~~~~-------- 153 (394)
T 2ay1_A 101 TGALRQALELARMA------NPDLRVFVSDPTWPNHVSIMNFMGL-------------PVQTYRYFDAETRG-------- 153 (394)
T ss_dssp HHHHHHHHHHHHHH------CTTCCEEEEESCCHHHHHHHHHHTC-------------CEEEEECEETTTTE--------
T ss_pred hhHHHHHHHHHHhc------CCCCEEEEcCCCChhHHHHHHHcCC-------------ceEEEecccccCCc--------
Confidence 99999999988654 2567899999999998554433322 233333310 0011
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccc--cccccccc
Q psy8199 403 IARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTG--KFFACEHA 480 (965)
Q Consensus 403 ~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G--~~~~~~~~ 480 (965)
.|+++|++++++.+...+++++.. ++|++|.+. +.+++++|.++|++||+++|+||+|++|++.| .......+
T Consensus 154 ---~d~~~l~~~l~~~~~~~~~~~~~~-~~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~ 228 (394)
T 2ay1_A 154 ---VDFEGMKADLAAAKKGDMVLLHGC-CHNPTGANL-TLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLI 228 (394)
T ss_dssp ---ECHHHHHHHHHTCCTTCEEEEESS-SCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHH
T ss_pred ---cCHHHHHHHHHhCCCCCEEEEeCC-CCCCCCCCC-CHHHHHHHHHHHHHCCCEEEEecCccccccCcccchHHHHHH
Confidence 267889998875433456677666 789999754 78899999999999999999999999987654 22222222
Q ss_pred -CCCccee---eeccccC-CCcccceeeee---cHHHHHhhhccCCcccccccCCCC-CCHHHHHHHHHHHHHH------
Q psy8199 481 -EIWPDFL---CLSKGIT-GGYLPLSLVMT---TDKIYNSIYYKNNINIFLHSHSYS-GNPLACCAALATLEIF------ 545 (965)
Q Consensus 481 -~~~pDiv---t~sK~l~-gG~~pig~v~~---~~~i~~~~~~~~~~~~~~~~~t~~-~~~~~~aaa~a~L~~~------ 545 (965)
...+|++ ++||+++ .| +|+|++++ ++++++.+... ... .+..++. .++++++++.++|+..
T Consensus 229 ~~~~~~~i~~~s~sK~~~~~G-~riG~~~~~~~~~~~~~~l~~~--~~~-~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~ 304 (394)
T 2ay1_A 229 ASRIPEVLIAASCSKNFGIYR-ERTGCLLALCADAATRELAQGA--MAF-LNRQTYSFPPFHGAKIVSTVLTTPELRADW 304 (394)
T ss_dssp HHHCSSEEEEEECTTTTTCGG-GCEEEEEEECSSHHHHHHHHHH--HHH-HHHTTTSSCCCHHHHHHHHHHHSHHHHHHH
T ss_pred hhcCCCEEEEEeccCCCcCcC-CccceEEEEeCCHHHHHHHHHH--HHH-HHhhhcCCCChHHHHHHHHHhcChHHHHHH
Confidence 2234543 7899998 56 89999998 67655443220 000 1223444 4899999999988743
Q ss_pred --hcccHHHHHHHHHHHHHHHHHcccCCCceeeeece-eEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecCCEEE
Q psy8199 546 --NKDNILQRISQDMKKITKALTSLITHPKIINFRQK-GMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIGNTVY 622 (965)
Q Consensus 546 --~~~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~-G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~lR 622 (965)
.-+...++++++.+++.+.|+++.....+..+.+. |+++.+.+. ...+.+.+.++||++.++ +|
T Consensus 305 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~----------~~~~~~~l~~~gi~v~~~---~R 371 (394)
T 2ay1_A 305 MAELEAVRSGMLRLREQLAGELRDLSGSDRFGFVAEHRGMFSRLGAT----------PEQVKRIKEEFGIYMVGD---SR 371 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTTHHHHCCSSEEECCCC----------HHHHHHHHHHHCEECCTT---CE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeeEEcCCceEEEeeCCC----------HHHHHHHHHhCCEEecCC---Ce
Confidence 12345667777788888888765210023333344 555544332 124566777899999874 69
Q ss_pred EeCCcccCHHHHHHHHHhhhc
Q psy8199 623 LMPPYILNKNEIQHMTSAIFQ 643 (965)
Q Consensus 623 ~~p~~~~t~~~i~~~~~~l~~ 643 (965)
|+++ .+++++++++++++.+
T Consensus 372 is~~-~~~~~~i~~~~~~l~~ 391 (394)
T 2ay1_A 372 INIA-GLNDNTIPILARAIIE 391 (394)
T ss_dssp EEGG-GCCTTTHHHHHHHHHH
T ss_pred EEee-cCCHhhHHHHHHHHHH
Confidence 9977 4789999999988765
|
| >2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.8e-24 Score=248.81 Aligned_cols=344 Identities=8% Similarity=0.029 Sum_probs=229.4
Q ss_pred cccccccccchhccCCCCCHHH--HHHHHHHHhh--ccccccCCCCcHHHHHHHHHHHhhc-CCCCCe---EEEcCChhH
Q psy8199 254 KRYLDAISSWWVNLFGHSNSYI--NKALKNQLNK--LEHVMLSNLTHKPVIKLSEKLSSLT-QYKLGH---CFYGSDGAS 325 (965)
Q Consensus 254 ~~ylD~~~~~~~~~lGh~~p~v--~~av~~~~~~--~~~~~~~~~~~~~~~~la~~l~~~~-~~~~~~---v~~~~sGse 325 (965)
+.++||.+|.+. .+|+ +|.+ .+++.++++. ...|....+..+....+++.+.+.. +.+.++ +++++||++
T Consensus 47 ~~~i~l~~g~~~-~~~~-~~~~~~~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~~t~g~~~ 124 (430)
T 2x5f_A 47 STTYNATIGMAT-NKDG-KMFASSLDAMFNDLTPDEIFPYAPPQGIEELRDLWQQKMLRDNPELSIDNMSRPIVTNALTH 124 (430)
T ss_dssp TCSEECCCSSCE-ETTE-ECCCHHHHTTBSSCCGGGTSSCCCTTCCHHHHHHHHHHHHHHCTTCCGGGBCCCEEESHHHH
T ss_pred CCcEEeeeeecc-CCCC-chhhHHHHHHHHhcCcccccccCCCCCCHHHHHHHHHHHhccCcccCCCccceEEEcCCchH
Confidence 578999888653 6775 6666 7777776644 1222222223344444554443332 445677 999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCcccccc-ccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHH
Q psy8199 326 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALA-VTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIA 404 (965)
Q Consensus 326 A~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (965)
|++.+++.+.. ++++|++.+++||++...... .+. .+..+|.....+.
T Consensus 125 al~~~~~~l~~--------~gd~Vl~~~p~y~~~~~~~~~~~g~-------------~~~~~~~~~~~~~---------- 173 (430)
T 2x5f_A 125 GLSLVGDLFVN--------QDDTILLPEHNWGNYKLVFNTRNGA-------------NLQTYPIFDKDGH---------- 173 (430)
T ss_dssp HHHHHHHHHCC--------TTCEEEEESSCCTHHHHHHTTTTCC-------------EEEEECCBCTTSC----------
T ss_pred HHHHHHHHHhC--------CCCEEEEcCCcCccHHHHHHHhcCC-------------eEEEEeccCccCC----------
Confidence 99999997742 458899999999998544333 221 2233343211011
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHh-----cCCeEEEeccccCCCccccc-ccc-
Q psy8199 405 RCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNN-----YNIHLIADEIAVGCGRTGKF-FAC- 477 (965)
Q Consensus 405 ~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~-----~g~llI~DEv~tg~gr~G~~-~~~- 477 (965)
.|+++|++++++.+.++.+|++.. ++|++|.+ ++.+++++|.++|++ ||+++|+||+|++|.+.|.. ...
T Consensus 174 -~d~~~l~~~l~~~~~~~~~v~i~~-p~nptG~~-~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~ 250 (430)
T 2x5f_A 174 -YTTDSLVEALQSYNKDKVIMILNY-PNNPTGYT-PTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYEDVYTQSLF 250 (430)
T ss_dssp -BCSHHHHHHHHHCCSSEEEEEECS-SCTTTCCC-CCHHHHHHHHHHHHHHHHTTCEEEEEEECTTTTCBCSSSCCSCHH
T ss_pred -cCHHHHHHHHHhcCCCCEEEEEcC-CCCCCCCc-CCHHHHHHHHHHHHhhhhccCCEEEEEehhcccccCCcccchHHH
Confidence 257888888876443555544444 48899975 478899999999999 99999999999998766642 122
Q ss_pred -cccCCCcc------eeeeccccC-CCcccceeeee---cHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHH-H-
Q psy8199 478 -EHAEIWPD------FLCLSKGIT-GGYLPLSLVMT---TDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLE-I- 544 (965)
Q Consensus 478 -~~~~~~pD------ivt~sK~l~-gG~~pig~v~~---~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~-~- 544 (965)
...+..++ +.+|||.++ .| +++|++++ ++++++.+... .....++.+++.|+++++++.++|+ .
T Consensus 251 ~~~~~~~~~~~~~i~~~s~sK~~~~~G-~riG~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~a~~~~l~~~~ 327 (430)
T 2x5f_A 251 TALTNLHSNAILPIRLDGATKEFFAWG-FRVGFMTFGTSDQTTKEVLEAK--VKGLIRSNISSGPLPTQSAVKHVLKNNK 327 (430)
T ss_dssp HHHHTTCCTTEEEEEEEEHHHHTTCGG-GCCEEEEEBCCCHHHHHHHHHH--HHHHHHTTTSSCCHHHHHHHHHHHHSCH
T ss_pred HHHhhccCCcceEEEEEecccCCCCCC-CCeEEEEEecCCHHHHHHHHHH--HhhhhhcccCCCChHHHHHHHHHHccCh
Confidence 22233455 337899997 45 89999999 99998887641 0111223678899999999999997 3
Q ss_pred --Hhc-ccHHHHHHHHHHHHHHHHHccc-CCCceeeeecee-EEEEEEEeecCccchhhHHHHHHHHHHH-cCcEEeec-
Q psy8199 545 --FNK-DNILQRISQDMKKITKALTSLI-THPKIINFRQKG-MIWAFDVIIEDPEQIETFSKKFFVAALK-NELLLRPI- 617 (965)
Q Consensus 545 --~~~-~~~~~~~~~~~~~l~~~L~~l~-~~~~i~~v~g~G-~~~~i~~~~~~~~~~~~~~~~~~~~l~~-~Gi~~~~~- 617 (965)
.+. +...++++++.+++.+.|++.. .. ++..+.+.| +++++.+. .. ....+.+.|.+ +||++.|+
T Consensus 328 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-g~~~~~~~~g~~~~~~~~-~~------~~~~~~~~l~~~~gi~v~~g~ 399 (430)
T 2x5f_A 328 QFDKEIEQNIQTLKERYEVTKEVVYADQYHS-HWQAYDFNSGYFMAIKVH-DV------DPEALRKHLIDKYSIGVIALN 399 (430)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCGGGTT-TEEECCCCBSSEEEEEES-SS------CHHHHHHHHHHHHCEECEECS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC-CceeeCCCceEEEEeCCC-CC------CHHHHHHHHHHhCCEEEecCC
Confidence 221 2255666677777777776321 22 455555554 45666663 11 13467788887 99999986
Q ss_pred CCEEEEeCCcccCHHHHHHHHHhhhccc
Q psy8199 618 GNTVYLMPPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 618 ~~~lR~~p~~~~t~~~i~~~~~~l~~~~ 645 (965)
.+++|++++. .++++++++++++.+.+
T Consensus 400 ~~~iRis~~~-~~~e~i~~~~~~l~~~l 426 (430)
T 2x5f_A 400 ATDIRIAFSC-VEKDDIPHVFDSIAKAI 426 (430)
T ss_dssp SSEEEEEGGG-SCGGGHHHHHHHHHHHH
T ss_pred CCeEEEEEec-CCHHHHHHHHHHHHHHH
Confidence 4799999875 58889999999887654
|
| >2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ... | Back alignment and structure |
|---|
Probab=99.92 E-value=1.1e-24 Score=247.64 Aligned_cols=345 Identities=9% Similarity=-0.049 Sum_probs=215.5
Q ss_pred eEEEecCCcccccccccchhccCC--CCCHHHHHHHHHHHhhcc--ccccCCCCcHHHHHHHHHHHhhcC--CCCCeEEE
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFG--HSNSYINKALKNQLNKLE--HVMLSNLTHKPVIKLSEKLSSLTQ--YKLGHCFY 319 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lG--h~~p~v~~av~~~~~~~~--~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~ 319 (965)
..+.+..|+.++||.+|.+..+.| +.+|++.+|+.++++... .+....+..+.+..+++.+..... .+.++|++
T Consensus 18 ~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~ 97 (396)
T 2q7w_A 18 DLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENETTKNYLGIDGIPEFGRCTQELLFGKGSALINDKRART 97 (396)
T ss_dssp ----------CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEE
T ss_pred HHHhccCCCCceecccccccCCCCCccCcHHHHHHHHhhcCcccccCCCCCCCCHHHHHHHHHHHhcCCCCccccccEEE
Confidence 334455678899999998766666 567999999998876531 121122233344444444432210 12578998
Q ss_pred --cCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCC-CCCCCC
Q psy8199 320 --GSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPD-SRNINK 396 (965)
Q Consensus 320 --~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 396 (965)
++||++|++.+++++..+ .++++|++.+++||++.......+. .+..+|... ....
T Consensus 98 ~~~~g~~~a~~~~~~~~~~~------~~gd~Vl~~~p~y~~~~~~~~~~g~-------------~~~~~~~~~~~~~~-- 156 (396)
T 2q7w_A 98 AQTPGGTGALRVAADFLAKN------TSVKRVWVSNPSWPNHKSVFNSAGL-------------EVREYAYYDAENHT-- 156 (396)
T ss_dssp EEESHHHHHHHHHHHHHHHH------SCCCEEEEEESCCTHHHHHHHHTTC-------------EEEEEECEETTTTE--
T ss_pred EecccchhhHHHHHHHHHHh------CCCCEEEEcCCCchhHHHHHHHcCC-------------ceEEEecccCCCCC--
Confidence 999999999999987654 3568899999999998655444332 223333310 0011
Q ss_pred CCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccc--cc
Q psy8199 397 GNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTG--KF 474 (965)
Q Consensus 397 ~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G--~~ 474 (965)
.|+++|++++.+.+.+.+++++.. ++|++|.+ .+.+++++|.++|++||+++|+||+|++|++.| .+
T Consensus 157 ---------~d~~~l~~~l~~~~~~~~~v~~~~-p~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~ 225 (396)
T 2q7w_A 157 ---------LDFDALINSLNEAQAGDVVLFHGC-CHNPTGID-PTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDA 225 (396)
T ss_dssp ---------ECHHHHHHHHTTCCTTCEEEEECS-SCTTTCCC-CCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHT
T ss_pred ---------cCHHHHHHHHHhCCCCCEEEEeCC-CCCCCCCC-CCHHHHHHHHHHHHHCCCEEEEecccccccCCccchh
Confidence 267899998875433455565555 58889875 478889999999999999999999999987654 33
Q ss_pred ccccccCCCc-c---eeeeccccC-CCcccceeeee---cHH----HHHhhhccCCcccccccCCCC-CCHHHHHHHHHH
Q psy8199 475 FACEHAEIWP-D---FLCLSKGIT-GGYLPLSLVMT---TDK----IYNSIYYKNNINIFLHSHSYS-GNPLACCAALAT 541 (965)
Q Consensus 475 ~~~~~~~~~p-D---ivt~sK~l~-gG~~pig~v~~---~~~----i~~~~~~~~~~~~~~~~~t~~-~~~~~~aaa~a~ 541 (965)
.....+...+ + +.+|||+++ .| +|+|++++ +++ +++.+.. .+..++. .|+++++++.++
T Consensus 226 ~~~~~~~~~~~~~i~~~s~sK~~~~~G-~riG~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~a~~~~ 297 (396)
T 2q7w_A 226 EGLRAFAAMHKELIVASSYSXNFGLYN-ERVGACTLVAADSETVDRAFSQMKA-------AIRANYSNPPAHGASVVATI 297 (396)
T ss_dssp HHHHHHHHHCSCEEEEEECTTTTTCGG-GCCEEEEEECSSHHHHHHHHHHHHH-------HHHTTTSSCCHHHHHHHHHH
T ss_pred HHHHHHHhcCCcEEEEEeccccccccc-cccceEEEEcCCHHHHHHHHHHHHH-------HHhhccCCCCcHHHHHHHHH
Confidence 3333232222 3 337899998 56 89999986 553 4444432 1223443 499999999988
Q ss_pred HHHH------h--cccHHHHHHHHHHHHHHHHHcccCCCceeeeece-eEEEEEEEeecCccchhhHHHHHHHHHHHcCc
Q psy8199 542 LEIF------N--KDNILQRISQDMKKITKALTSLITHPKIINFRQK-GMIWAFDVIIEDPEQIETFSKKFFVAALKNEL 612 (965)
Q Consensus 542 L~~~------~--~~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~-G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi 612 (965)
|+.. . -+...++++++.+++.+.|+++..-..+....+. |+++.+.+. ...+.+.+.++||
T Consensus 298 l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~l~~~gv 367 (396)
T 2q7w_A 298 LSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLT----------KEQVLRLREEFGV 367 (396)
T ss_dssp HTSHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHTTCCSCCTHHHHCCSSEEECCCC----------HHHHHHHHHHHCE
T ss_pred hcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceecCCCceEEEecCC----------HHHHHHHHHhcCe
Confidence 8532 0 1234566677777888877765100023333444 444333321 1245566778999
Q ss_pred EEeecCCEEEEeCCcccCHHHHHHHHHhhhcc
Q psy8199 613 LLRPIGNTVYLMPPYILNKNEIQHMTSAIFQT 644 (965)
Q Consensus 613 ~~~~~~~~lR~~p~~~~t~~~i~~~~~~l~~~ 644 (965)
++.++ +|++++. .++++++++++++.++
T Consensus 368 ~v~~~---~Ris~~~-~~~e~i~~~~~~l~~~ 395 (396)
T 2q7w_A 368 YAVAS---GRVNVAG-MTPDNMAPLCEAIVAV 395 (396)
T ss_dssp ECCTT---CEEEGGG-CCTTTHHHHHHHHHHH
T ss_pred eecCC---ceEEEee-cCHHHHHHHHHHHHhc
Confidence 99874 6999774 3889999999887653
|
| >1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.6e-24 Score=246.07 Aligned_cols=343 Identities=9% Similarity=-0.019 Sum_probs=224.1
Q ss_pred CCcccccccccchhccCCCC--CHHHHHHHHHHHhhccccccCCC-CcHHHHHHHHHHHhhcC-C-----CCCeEEE--c
Q psy8199 252 SGKRYLDAISSWWVNLFGHS--NSYINKALKNQLNKLEHVMLSNL-THKPVIKLSEKLSSLTQ-Y-----KLGHCFY--G 320 (965)
Q Consensus 252 dG~~ylD~~~~~~~~~lGh~--~p~v~~av~~~~~~~~~~~~~~~-~~~~~~~la~~l~~~~~-~-----~~~~v~~--~ 320 (965)
+|+.++||.+|.+..+.||. +|.+.+|+.+++...... ..| +.....++.+.++++++ . ..++|++ +
T Consensus 28 ~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~--~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~t 105 (412)
T 1ajs_A 28 PDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSLN--HEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQS 105 (412)
T ss_dssp CCTTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTCC--CCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEE
T ss_pred CCCCceeeccceecCCCCCccccHHHHHHHHHhhhChhhc--cCCCCCCCCHHHHHHHHHHHhcCCCCccCCCcEEEEEC
Confidence 57889999998764555554 589999999887321111 111 22233455555555542 1 4579999 9
Q ss_pred CChhHHHHHHHHHHHHHHHhcCCCCc-----eEEEEEcCCccCCccccccccCCcCccchhcccCCC-eeEecCCC-CCC
Q psy8199 321 SDGASAVEVALKMSFHYWYNKGFLNK-----KKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNK-TYIITTPD-SRN 393 (965)
Q Consensus 321 ~sGseA~~~Al~~a~~~~~~~g~~~~-----~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~ 393 (965)
+||++|++.+++++..+ .++ ++|++.+++||++...+...+. . +..+|... ...
T Consensus 106 ~gg~~a~~~~~~~~~~~------~~g~~~~~d~Vl~~~p~y~~~~~~~~~~g~-------------~~~~~~~~~~~~~~ 166 (412)
T 1ajs_A 106 LGGTGALRIGAEFLARW------YNGTNNKDTPVYVSSPTWENHNGVFTTAGF-------------KDIRSYRYWDTEKR 166 (412)
T ss_dssp EHHHHHHHHHHHHHHHH------SSSSSCCCSCEEEEESCCTHHHHHHHHTTC-------------SCEEEEECEETTTT
T ss_pred CCcHHHHHHHHHHHHHh------CcCcCCCCCeEEEcCCCcHHHHHHHHHcCC-------------ceeEEEeeecCCCC
Confidence 99999999998866544 244 7899999999998654443332 2 23333310 011
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccc-
Q psy8199 394 INKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTG- 472 (965)
Q Consensus 394 ~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G- 472 (965)
. .|+++|++++.+...++.+|++.. ++|++|.+ ++.+++++|.++|++||+++|+||+|++|++.|
T Consensus 167 ~-----------~d~~~l~~~l~~~~~~~~~v~~~~-p~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~y~~~~~~~~ 233 (412)
T 1ajs_A 167 G-----------LDLQGFLSDLENAPEFSIFVLHAC-AHNPTGTD-PTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNL 233 (412)
T ss_dssp E-----------ECHHHHHHHHHHSCTTCEEEEESS-SCTTTCCC-CCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCH
T ss_pred c-----------cCHHHHHHHHHhCCCCcEEEEECC-CCCCCCCC-CCHHHHHHHHHHHHHCCCEEEEEcccccccCCcc
Confidence 1 267889888876444556665444 58888875 588999999999999999999999999998876
Q ss_pred --ccccccccCCCcc----eeeeccccCC-Ccccceeeee---cHHHHHhhhccCCcccccccCCCC-CCHHHHHHHHHH
Q psy8199 473 --KFFACEHAEIWPD----FLCLSKGITG-GYLPLSLVMT---TDKIYNSIYYKNNINIFLHSHSYS-GNPLACCAALAT 541 (965)
Q Consensus 473 --~~~~~~~~~~~pD----ivt~sK~l~g-G~~pig~v~~---~~~i~~~~~~~~~~~~~~~~~t~~-~~~~~~aaa~a~ 541 (965)
.++....+...+| +.+|||+++. | +|+|++++ ++++++.+... .. ..+..+++ .|+++++++.++
T Consensus 234 ~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~riG~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~a~~~~ 309 (412)
T 1ajs_A 234 EKDAWAIRYFVSEGFELFCAQSFSKNFGLYN-ERVGNLTVVAKEPDSILRVLSQ--MQ-KIVRVTWSNPPAQGARIVART 309 (412)
T ss_dssp HHHTHHHHHHHHTTCCEEEEEECTTTSCCGG-GCEEEEEEECSSHHHHHHHHHH--HH-HHHHTTTSSCCSHHHHHHHHH
T ss_pred cccchHHHHHhccCCcEEEEEecccccCCCC-cceEEEEEecCCHHHHHHHHHH--HH-HHHhcccCCCChHHHHHHHHH
Confidence 3334433322344 3478999987 6 89999999 88744433210 00 01335565 599999999999
Q ss_pred HHHHh--------cccHHHHHHHHHHHHHHHHHcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcE
Q psy8199 542 LEIFN--------KDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELL 613 (965)
Q Consensus 542 L~~~~--------~~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~ 613 (965)
|+... -+...++++++++++.+.|+++..-..+..+.+.|.++.+.-. + ...+...+.++||+
T Consensus 310 l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~--~-------~~~~~~~l~~~gv~ 380 (412)
T 1ajs_A 310 LSDPELFHEWTGNVKTMADRILSMRSELRARLEALKTPGTWNHITDQIGMFSFTGL--N-------PKQVEYLINQKHIY 380 (412)
T ss_dssp HHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHCCSSEEECCC--C-------HHHHHHHHHTTCEE
T ss_pred HcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCeeEEcCCCceEEEeCC--C-------HHHHHHHHHhCCEE
Confidence 97541 1346777788888888888765200023333444444333211 1 22344566789999
Q ss_pred EeecCCEEEEeCCcccCHHHHHHHHHhhhccc
Q psy8199 614 LRPIGNTVYLMPPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 614 ~~~~~~~lR~~p~~~~t~~~i~~~~~~l~~~~ 645 (965)
+.|+ +|++++. .++++++++++++.+.+
T Consensus 381 v~~~---~Ris~~~-~~~~~i~~~~~~l~~~l 408 (412)
T 1ajs_A 381 LLPS---GRINMCG-LTTKNLDYVATSIHEAV 408 (412)
T ss_dssp CCTT---SEEEGGG-CCTTTHHHHHHHHHHHH
T ss_pred ecCC---cEEEeee-CCHHHHHHHHHHHHHHH
Confidence 9874 5998653 48899999999887654
|
| >3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=3.3e-24 Score=241.95 Aligned_cols=296 Identities=13% Similarity=0.106 Sum_probs=208.7
Q ss_pred HHHHHHHHHHHhhc-CCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccch
Q psy8199 297 KPVIKLSEKLSSLT-QYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEI 375 (965)
Q Consensus 297 ~~~~~la~~l~~~~-~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~ 375 (965)
+...++.+.+++++ +.+.+++++++||++|++.+++.+. .++++|++.+++|++........+.
T Consensus 63 ~g~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~l~--------~~gd~Vl~~~~~~~~~~~~~~~~g~------- 127 (375)
T 3op7_A 63 EGSPAFKKSVSQLYTGVKPEQILQTNGATGANLLVLYSLI--------EPGDHVISLYPTYQQLYDIPKSLGA------- 127 (375)
T ss_dssp TCCHHHHHHHHTTSSSCCGGGEEEESHHHHHHHHHHHHHC--------CTTCEEEEEESSCTHHHHHHHHTTC-------
T ss_pred CChHHHHHHHHHHhccCChhhEEEcCChHHHHHHHHHHhc--------CCCCEEEEeCCCchhHHHHHHHcCC-------
Confidence 33567888888876 3466899999999999999999773 2568899999999987443332221
Q ss_pred hcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhc
Q psy8199 376 YTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNY 455 (965)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~ 455 (965)
.+..+|.+...+.. .|+++|++++. +++++|++++ ++|++|.+. +.+++++|.++|++|
T Consensus 128 ------~~~~v~~~~~~~~~----------~d~~~l~~~l~---~~~~~v~~~~-~~nptG~~~-~~~~l~~i~~la~~~ 186 (375)
T 3op7_A 128 ------EVDLWQIEEENGWL----------PDLEKLRQLIR---PTTKMICINN-ANNPTGAVM-DRTYLEELVEIASEV 186 (375)
T ss_dssp ------EEEEEEEEGGGTTE----------ECHHHHHHHCC---TTCCEEEEES-SCTTTCCCC-CHHHHHHHHHHHHTT
T ss_pred ------EEEEEeccccCCCC----------CCHHHHHHhhc---cCCeEEEEcC-CCCCCCCCC-CHHHHHHHHHHHHHc
Confidence 22333322100000 16788988885 3567788888 799999765 788899999999999
Q ss_pred CCeEEEeccccCCCcccccccccccCCCcceeeeccccC-CCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHH
Q psy8199 456 NIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLA 534 (965)
Q Consensus 456 g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~sK~l~-gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~ 534 (965)
|+++|+||+|+++++.+.....+.++..+++.+|||+++ .| +++|++++++++++.+.. ..+..+++.++++
T Consensus 187 ~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~v~~~~~l~~~~~~------~~~~~~~~~~~~~ 259 (375)
T 3op7_A 187 GAYILSDEVYRSFSELDVPSIIEVYDKGIAVNSLSKTYSLPG-IRIGWVAANHQVTDILRD------YRDYTMICAGVFD 259 (375)
T ss_dssp TCEEEEECCSCCCSSSCCCCHHHHCTTEEEEEESSSSSSCGG-GCCEEEECCHHHHHHHTT------TGGGTTSCCCHHH
T ss_pred CCEEEEEcccccccccCCCchhhhcCCEEEEeEChhhcCCcc-cceEEEEeCHHHHHHHHH------HHhhhccCCCcHH
Confidence 999999999999876533333455566677889999997 55 899999999999998865 3456778889999
Q ss_pred HHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHcccCCCceeeeeceeE-EEEEEEeecCccchhhHHHHHHHHH-HHc
Q psy8199 535 CCAALATLEIFNK--DNILQRISQDMKKITKALTSLITHPKIINFRQKGM-IWAFDVIIEDPEQIETFSKKFFVAA-LKN 610 (965)
Q Consensus 535 ~aaa~a~L~~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~G~-~~~i~~~~~~~~~~~~~~~~~~~~l-~~~ 610 (965)
++++.++|+..++ +...++++++.+++.+.|++ .+++..+.+.|. +..+.+. .+. ....+.+.+ .++
T Consensus 260 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~---~~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~ll~~~ 330 (375)
T 3op7_A 260 DLVAQLALAHYQEILERNRHILEENLAILDQWIEE---EPLVSYIRPAVVSTSFVKIA--VDM----PMEDFCLQLLQEH 330 (375)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH---CTTEEECCCSSSSCEEEEEC--CSS----CHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhh---CCCceEecCCCeEEEeEEcC--CCC----CHHHHHHHHHHhC
Confidence 9999999875321 22334445555666665554 466665555543 4444443 211 133566666 588
Q ss_pred CcEEeecC-----CEEEEeCCcccCHHHHHHHHHhhhcccc
Q psy8199 611 ELLLRPIG-----NTVYLMPPYILNKNEIQHMTSAIFQTFN 646 (965)
Q Consensus 611 Gi~~~~~~-----~~lR~~p~~~~t~~~i~~~~~~l~~~~~ 646 (965)
||++.|+. +++|++ +..+.++++++++++.+.+.
T Consensus 331 gi~v~~g~~~~~~~~iRi~--~~~~~~~i~~~l~~l~~~l~ 369 (375)
T 3op7_A 331 GVLLVPGNRFERDGYVRLG--FACEQETLIKGLEKLSQFLR 369 (375)
T ss_dssp CEECEEGGGGTCTTEEEEC--CCSCHHHHHHHHHHHHHHHG
T ss_pred CEEEeChhhhCCCCeEEEE--ecCCHHHHHHHHHHHHHHHH
Confidence 99998753 799999 55667889999998876544
|
| >3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.91 E-value=8.2e-24 Score=237.73 Aligned_cols=322 Identities=16% Similarity=0.132 Sum_probs=226.8
Q ss_pred CcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHH
Q psy8199 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALK 332 (965)
Q Consensus 253 G~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~ 332 (965)
++.+||+.++. ++++ .+|++++|+.++++....+ +.....++.++++++++.+.+++++++||++|++.+++
T Consensus 29 ~~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~y-----~~~~~~~lr~~la~~~~~~~~~v~~~~g~~~a~~~~~~ 100 (365)
T 3get_A 29 VKEVIKLASNE--NPFG-TPPKAIECLRQNANKAHLY-----PDDSMIELKSTLAQKYKVQNENIIIGAGSDQVIEFAIH 100 (365)
T ss_dssp CSCCEECSSCC--CTTC-SCHHHHHHHHHHGGGTTSC-----CCTTCHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHH
T ss_pred CCceEEecCCC--CCCC-CCHHHHHHHHHHHHhhccC-----CCCChHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHH
Confidence 37899998874 4566 7899999999998754322 22222578888888887667899999999999999998
Q ss_pred HHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHH
Q psy8199 333 MSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLE 412 (965)
Q Consensus 333 ~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le 412 (965)
.... ++++|++.+++|+++.......+ ..+..+|.+.. .+ .|+++|+
T Consensus 101 ~l~~--------~gd~vl~~~~~~~~~~~~~~~~g-------------~~~~~v~~~~~----------~~--~d~~~l~ 147 (365)
T 3get_A 101 SKLN--------SKNAFLQAGVTFAMYEIYAKQCG-------------AKCYKTQSITH----------NL--DEFKKLY 147 (365)
T ss_dssp HHCC--------TTCEEEECSSCCTHHHHHHHHHT-------------CEEEECSSSSC----------CH--HHHHHHH
T ss_pred HHhC--------CCCEEEEeCCChHHHHHHHHHcC-------------CEEEEEecCCC----------CC--CCHHHHH
Confidence 7732 56889999999988743332222 12334443110 12 5889999
Q ss_pred HHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCc--cc-cc-ccccc---cCCCcc
Q psy8199 413 ILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGR--TG-KF-FACEH---AEIWPD 485 (965)
Q Consensus 413 ~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr--~G-~~-~~~~~---~~~~pD 485 (965)
++++ +++.+|+++. ++|++|.+. +.+.+++|.++| ++|+++|+||+|++|.. .| .. ..... .+....
T Consensus 148 ~~l~---~~~~~v~~~~-p~nptG~~~-~~~~l~~l~~~~-~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 221 (365)
T 3get_A 148 ETHK---DEIKLIFLCL-PNNPLGECL-DASEATEFIKGV-NEDCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDNVLY 221 (365)
T ss_dssp HHTT---TTEEEEEEES-SCTTTCCCC-CHHHHHHHHHTS-CTTSEEEEECTTHHHHHHHCGGGCCCHHHHHHHCTTEEE
T ss_pred HHhC---CCCCEEEEcC-CCCCCCCCc-CHHHHHHHHHhC-CCCcEEEEeCccHHHhcccCCcccccHhHHhccCCCEEE
Confidence 8885 4567777765 689999877 566677777777 67999999999997652 22 21 11222 222233
Q ss_pred eeeeccccC-CCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHH
Q psy8199 486 FLCLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN-KDNILQRISQDMKKITK 563 (965)
Q Consensus 486 ivt~sK~l~-gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~-~~~~~~~~~~~~~~l~~ 563 (965)
+.++||.++ .| +++|++++++++++.+.. ...+++.|+++++++.++|+..+ -+...++++++.+++.+
T Consensus 222 ~~s~sK~~~~~G-~r~G~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~ 292 (365)
T 3get_A 222 LGTFSKLYGLGG-LRIGYGIANANIISAFYK--------LRAPFNVSNLALKAAVAAMDDDEFTEKTLENNFSQMELYKE 292 (365)
T ss_dssp EEESSSTTSCTT-TCCEEEEECHHHHHHHHH--------HSCTTCSCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred EeecchHhcCcc-hheEEEEcCHHHHHHHHH--------hcCCCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 347899987 45 899999999999988865 22456789999999999986321 12345566666777777
Q ss_pred HHHcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec----CCEEEEeCCcccCHHHHHHHHH
Q psy8199 564 ALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI----GNTVYLMPPYILNKNEIQHMTS 639 (965)
Q Consensus 564 ~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~----~~~lR~~p~~~~t~~~i~~~~~ 639 (965)
.|+++ ++...++.|.++.+.+. +. ....+.+.|.++||.+.++ .+++|++++ ++++++++++
T Consensus 293 ~l~~~----g~~~~~~~~~~~~~~~~--~~-----~~~~~~~~l~~~gi~v~~g~~~~~~~iRis~~---~~~~i~~l~~ 358 (365)
T 3get_A 293 FAKKH----NIKIIDSYTNFITYFFD--EK-----NSTDLSEKLLKKGIIIRNLKSYGLNAIRITIG---TSYENEKFFT 358 (365)
T ss_dssp HHHHT----TCEECCCSSSEEEEECS--SS-----CHHHHHHHHHTTTEECEECGGGTCSEEEEECC---CHHHHHHHHH
T ss_pred HHHhC----CCEECCCCCeEEEEECC--CC-----CHHHHHHHHHHCCEEEEECccCCCCEEEEEcC---CHHHHHHHHH
Confidence 77654 45556778888777764 11 2456788899999999886 379999954 8899999998
Q ss_pred hhhcc
Q psy8199 640 AIFQT 644 (965)
Q Consensus 640 ~l~~~ 644 (965)
++.+.
T Consensus 359 ~l~~~ 363 (365)
T 3get_A 359 EFDKI 363 (365)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87653
|
| >3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.9e-24 Score=246.68 Aligned_cols=343 Identities=10% Similarity=0.033 Sum_probs=227.0
Q ss_pred EecCCcccccccccchhccCCCCCHHHHHHHHHHHhhcccc-ccCCC-CcHHHHHHHHHHHhhc----CCCCCeEEEcCC
Q psy8199 249 ITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHV-MLSNL-THKPVIKLSEKLSSLT----QYKLGHCFYGSD 322 (965)
Q Consensus 249 ~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~-~~~~~-~~~~~~~la~~l~~~~----~~~~~~v~~~~s 322 (965)
.+.+|+.+||+.+|. ..++ .+|+|.+|+.+++++.... ....| ......+|.+.+++++ +...++++|++|
T Consensus 64 ~~~~~~~~i~l~~g~--~~~~-~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~g~~~~~~~i~~t~G 140 (449)
T 3qgu_A 64 EKNPDAKIISLGIGD--TTEP-LPKYIADAMAKAAAGLATREGYSGYGAEQGQGALREAVASTFYGHAGRAADEIFISDG 140 (449)
T ss_dssp HHCTTCCCEECSSCC--CCCC-CCHHHHHHHHHHHHGGGGSCCCCCSTTTTCCHHHHHHHHHHHHTTTTCCGGGEEEESC
T ss_pred hhCCCCCEEEeeCCC--CCCC-CCHHHHHHHHHHHHhhccccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCHHHEEEccC
Confidence 334689999999884 3343 6899999999998864211 11122 2233466777777765 556679999999
Q ss_pred hhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhH
Q psy8199 323 GASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANE 402 (965)
Q Consensus 323 GseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (965)
+++|+..+ .... .++++|++.+++||++.......+....+.. .....+..+|........
T Consensus 141 ~~~al~~~-~~l~--------~~gd~Vl~~~p~~~~~~~~~~~~g~~g~~~~---~~~~~~~~~~~~~~~~~~------- 201 (449)
T 3qgu_A 141 SKCDIARI-QMMF--------GSKPTVAVQDPSYPVYVDTSVMMGMTGDHNG---TGFDGIEYMVCNPDNHFF------- 201 (449)
T ss_dssp HHHHHHHH-HHHH--------CSSSCEEEEESCCTHHHHHHHHHTCSCCBCS---SSBTTEEEEECCGGGTTC-------
T ss_pred HHHHHHHH-HHHh--------CCCCEEEEcCCCChhHHHHHHHcCCcccccc---cccceeEEEecccccCCc-------
Confidence 99999988 4332 3678899999999998655544443210000 001124444443211100
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccc-ccccccc-
Q psy8199 403 IARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK-FFACEHA- 480 (965)
Q Consensus 403 ~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~-~~~~~~~- 480 (965)
.|+ .+. .++.+|+++. ++|++|.+. +.+.+++|.++|++||+++|+||+|++|++.|. ......+
T Consensus 202 ---~~~-------~~~-~~~~~v~l~~-p~NPtG~~~-~~~~l~~l~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~ 268 (449)
T 3qgu_A 202 ---PDL-------SKA-KRTDIIFFCS-PNNPTGAAA-TRAQLTELVNFARKNGSILVYDAAYALYISNPDCPKTIYEIP 268 (449)
T ss_dssp ---CCG-------GGC-CCCSEEEEES-SCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTGGGCCCTTSCSSGGGST
T ss_pred ---CCh-------hHc-CCCCEEEEeC-CCCCCCCcC-CHHHHHHHHHHHHHCCcEEEEEcchHhhhcCCCCCCCHhhcc
Confidence 011 111 2445566555 689999765 778899999999999999999999999877653 2222222
Q ss_pred ---CCCcceeeeccccC-CCcccceeeeecHHHHHh--------hhccCCcccccccCCCCCCHHHHHHHHHHHHHHh--
Q psy8199 481 ---EIWPDFLCLSKGIT-GGYLPLSLVMTTDKIYNS--------IYYKNNINIFLHSHSYSGNPLACCAALATLEIFN-- 546 (965)
Q Consensus 481 ---~~~pDivt~sK~l~-gG~~pig~v~~~~~i~~~--------~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~-- 546 (965)
+....+.+|||+++ .| +|+|++++++++++. +.. .....+++.++++++++.++|+...
T Consensus 269 ~~~~~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~a~~~~l~~~~~~ 341 (449)
T 3qgu_A 269 GADEVAIETCSFSKYAGFTG-VRLGWTVVPKALKYANGEPVHADWNR------VMTTCFNGASNIVQAGGLACLQPEGLK 341 (449)
T ss_dssp TGGGTEEEEEECSGGGTCTT-CCCEEEECCTTCBCTTSCBHHHHHHH------HHHHSCCCCCHHHHHHHHHHTSHHHHH
T ss_pred CCCCcEEEEecchhhcCCcc-ceeEEEecCHHHHhhhhhhHHHHHHH------HhhcccCCCCHHHHHHHHHHHhhcCHH
Confidence 22344568999997 56 899999999887752 322 2234555789999999999986421
Q ss_pred -cccHHHHHHHHHHHHHHHHHcccCCCceeeeece-eEEEEEEEeecCccchhhHHHHHHHHHHHc-CcEEeec------
Q psy8199 547 -KDNILQRISQDMKKITKALTSLITHPKIINFRQK-GMIWAFDVIIEDPEQIETFSKKFFVAALKN-ELLLRPI------ 617 (965)
Q Consensus 547 -~~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~-G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~-Gi~~~~~------ 617 (965)
-++..++++++.+++.+.|+++ ++....+. |.++.+.+. . ....++.+.|+++ ||++.|+
T Consensus 342 ~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~--~-----~~~~~~~~~l~~~~gI~v~pg~~f~~~ 410 (449)
T 3qgu_A 342 EMNAMIKFYKENAQILKTTFTEM----GFSVYGGDDAPYIWVGFP--G-----KPSWDVFAEILERCNIVTTPGSGYGPA 410 (449)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT----TCCEEESSSSSEEEEECT--T-----SCHHHHHHHHHHHHCEECEEGGGGCGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHC----CCeeeCCCCeeEEEEECC--C-----CCHHHHHHHHHHHCCEEEecchHhCCC
Confidence 2346777788888888888765 34444444 666666653 1 0134566777765 9999874
Q ss_pred -CCEEEEeCCcccCHHHHHHHHHhhhcccc
Q psy8199 618 -GNTVYLMPPYILNKNEIQHMTSAIFQTFN 646 (965)
Q Consensus 618 -~~~lR~~p~~~~t~~~i~~~~~~l~~~~~ 646 (965)
.+++||+ +..++++++++++++.+++.
T Consensus 411 ~~~~iRis--~~~~~e~i~~~l~~l~~~~~ 438 (449)
T 3qgu_A 411 GEGFVRAS--AFGSRENILEAVRRFKEAYG 438 (449)
T ss_dssp GTTEEEEE--CCSCHHHHHHHHHHHHHHHC
T ss_pred CCCeEEEE--ecCCHHHHHHHHHHHHHHHH
Confidence 3799999 67799999999999876543
|
| >3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=4.1e-23 Score=235.97 Aligned_cols=348 Identities=12% Similarity=0.069 Sum_probs=229.2
Q ss_pred CcccccccccchhccCCCCCHHHHHHHHHHHhhc--cccccCCCCcHHHHHHHHHHHhhcCC--CC-CeEEEcCChhHHH
Q psy8199 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKL--EHVMLSNLTHKPVIKLSEKLSSLTQY--KL-GHCFYGSDGASAV 327 (965)
Q Consensus 253 G~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~--~~~~~~~~~~~~~~~la~~l~~~~~~--~~-~~v~~~~sGseA~ 327 (965)
+..+||+..|.. .++ .+|+|.+|+.+++... ..+....+..+....+++.+.+.++. .. +++++++||++|+
T Consensus 22 ~~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~i~~~~g~~~a~ 98 (410)
T 3e2y_A 22 DPSVVNLGQGFP--DIS-PPSYVKEELSKAAFIDNMNQYTRGFGHPALVKALSCLYGKIYQRQIDPNEEILVAVGAYGSL 98 (410)
T ss_dssp STTSEECSSCCC--CSC-CCHHHHHHHHHHHTCGGGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHH
T ss_pred CCCeEEecCCCC--CCC-CCHHHHHHHHHHHhCccccCCCCCCChHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHH
Confidence 456788877742 343 5899999999998753 22322233456667777777765542 34 7899999999999
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHH
Q psy8199 328 EVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCA 407 (965)
Q Consensus 328 ~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 407 (965)
+.+++.+. .++++|++..++||++.......+. .+..+|...............+ ..|
T Consensus 99 ~~~~~~~~--------~~gd~vl~~~p~~~~~~~~~~~~g~-------------~~~~~~~~~~~~~g~~~~~~~~-~~d 156 (410)
T 3e2y_A 99 FNSIQGLV--------DPGDEVIIMVPFYDCYEPMVRMAGA-------------VPVFIPLRSKPTDGMKWTSSDW-TFD 156 (410)
T ss_dssp HHHHHHHC--------CTTCEEEEEESCCTTHHHHHHHTTC-------------EEEEEECEECCCCSSCCBGGGE-ECC
T ss_pred HHHHHHhc--------CCCCEEEEeCCCchhhHHHHHHcCC-------------EEEEEeccccccccccccccCC-cCC
Confidence 99999773 2568899999999988544333222 1222222100000000000000 026
Q ss_pred HHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccccc-ccccccC----C
Q psy8199 408 IFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKF-FACEHAE----I 482 (965)
Q Consensus 408 ~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~-~~~~~~~----~ 482 (965)
+++|++++. .++++|++++ ++|++|.+. +++.+++|.++|++||+++|+||+|++|++.|.. .....+. .
T Consensus 157 ~~~l~~~~~---~~~~~v~~~~-p~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~ 231 (410)
T 3e2y_A 157 PRELESKFS---SKTKAIILNT-PHNPLGKVY-TRQELQVIADLCVKHDTLCISDEVYEWLVYTGHTHVKIATLPGMWER 231 (410)
T ss_dssp HHHHHTTCC---TTEEEEEEES-SCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGG
T ss_pred HHHHHhhcC---CCceEEEEeC-CCCCCCcCc-CHHHHHHHHHHHHHcCcEEEEEhhhhhcccCCCCCCCHHHcCCccCe
Confidence 788887764 4677888887 799999876 7778999999999999999999999999877752 2333332 1
Q ss_pred CcceeeeccccC-CCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHH-----hc----ccHHH
Q psy8199 483 WPDFLCLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIF-----NK----DNILQ 552 (965)
Q Consensus 483 ~pDivt~sK~l~-gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~-----~~----~~~~~ 552 (965)
..++.+|||.++ .| +++|++++++++++.+.. ..+.++++.++++++++.++|+.. .. +...+
T Consensus 232 ~i~~~S~sK~~g~~G-~r~G~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~ 304 (410)
T 3e2y_A 232 TITIGSAGKTFSVTG-WKLGWSIGPAHLIKHLQT------VQQNSFYTCATPLQAALAEAFWIDIKRMDDPECYFNSLPK 304 (410)
T ss_dssp EEEEEEHHHHSSCGG-GCCEEEECCHHHHHHHHH------HHHTTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHH
T ss_pred EEEEecchhhcCCCC-ceEEEEEECHHHHHHHHH------HHHhhccCCChHHHHHHHHHHHhhhccccchHHHHHHHHH
Confidence 233447899997 56 899999999999988765 345678889999999999999741 11 23455
Q ss_pred HHHHHHHHHHHHHHcccCCCceee-eeceeEEEEEEEeecCcc-c----hhhHHHHHHHHH-HHcCcEEeec--------
Q psy8199 553 RISQDMKKITKALTSLITHPKIIN-FRQKGMIWAFDVIIEDPE-Q----IETFSKKFFVAA-LKNELLLRPI-------- 617 (965)
Q Consensus 553 ~~~~~~~~l~~~L~~l~~~~~i~~-v~g~G~~~~i~~~~~~~~-~----~~~~~~~~~~~l-~~~Gi~~~~~-------- 617 (965)
+++++.+++.+.|+++ ++.. .+..|.++++++...... + .......+...+ .++||++.|+
T Consensus 305 ~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~ 380 (410)
T 3e2y_A 305 ELEVKRDRMVRLLNSV----GLKPIVPDGGYFIIADVSSLGADLSDMNSDEPYDYKFVKWMTKHKKLTAIPVSAFCDSKS 380 (410)
T ss_dssp HHHHHHHHHHHHHHTT----TCEEEBCSBSSEEEEECGGGCCCCTTCCSSCCHHHHHHHHHHHHHSEECEEGGGGSCTTT
T ss_pred HHHHHHHHHHHHHHHC----CCeecCCCccEEEEEEchhhhcccccccccccCHHHHHHHHHHHcCEEEeCchhhCCCCC
Confidence 5666666777777654 3443 344566666666410000 0 001122455544 5789999763
Q ss_pred ----CCEEEEeCCcccCHHHHHHHHHhhhc
Q psy8199 618 ----GNTVYLMPPYILNKNEIQHMTSAIFQ 643 (965)
Q Consensus 618 ----~~~lR~~p~~~~t~~~i~~~~~~l~~ 643 (965)
.+++||+ +..++++++++++++.+
T Consensus 381 ~~~~~~~iRis--~~~~~e~l~~~l~~l~~ 408 (410)
T 3e2y_A 381 KPHFEKLVRFC--FIKKDSTLDAAEEIFRA 408 (410)
T ss_dssp HHHHTTEEEEE--CCCCHHHHHHHHHHHHT
T ss_pred CCCCCCEEEEE--EcCCHHHHHHHHHHHHh
Confidence 2689999 66799999999998864
|
| >1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=3.1e-23 Score=236.53 Aligned_cols=327 Identities=10% Similarity=0.007 Sum_probs=223.6
Q ss_pred CCCCHHHHHHHHHHHhhccc-cccCC-----CCcHHHHHHHHHHHhhcCC-CCCeEEEcCChhHHHHHHHHHHHHHHHhc
Q psy8199 269 GHSNSYINKALKNQLNKLEH-VMLSN-----LTHKPVIKLSEKLSSLTQY-KLGHCFYGSDGASAVEVALKMSFHYWYNK 341 (965)
Q Consensus 269 Gh~~p~v~~av~~~~~~~~~-~~~~~-----~~~~~~~~la~~l~~~~~~-~~~~v~~~~sGseA~~~Al~~a~~~~~~~ 341 (965)
|+.+|++.+|+.++++.... .+... ...+...++.+.++++++. +.++++|++||++|++.+++.+++++
T Consensus 33 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~~~~~~--- 109 (406)
T 1kmj_A 33 AQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTTEGINLVANSWGNSN--- 109 (406)
T ss_dssp CCCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHTHHHH---
T ss_pred CCCCHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEeCChhHHHHHHHHHhhhhc---
Confidence 46899999999999876421 11000 1355678899999999975 46899999999999999999885321
Q ss_pred CCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCc
Q psy8199 342 GFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNK 421 (965)
Q Consensus 342 g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~ 421 (965)
..++++|++.+++||+.......+.. .....+..+|.+... . .|+++|++++. ++
T Consensus 110 -~~~gd~vl~~~~~~~~~~~~~~~~~~---------~~g~~~~~~~~~~~~-~-----------~d~~~l~~~l~---~~ 164 (406)
T 1kmj_A 110 -VRAGDNIIISQMEHHANIVPWQMLCA---------RVGAELRVIPLNPDG-T-----------LQLETLPTLFD---EK 164 (406)
T ss_dssp -CCTTCEEEEETTCCGGGTHHHHHHHH---------HHTCEEEEECBCTTS-C-----------BCGGGHHHHCC---TT
T ss_pred -CCCCCEEEEecccchHHHHHHHHHHH---------hCCCEEEEEecCCCC-C-----------cCHHHHHHHhc---cC
Confidence 03568899999999987422111100 001123344433211 1 25678888774 46
Q ss_pred EEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCccee--eeccccCCCccc
Q psy8199 422 IAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL--CLSKGITGGYLP 499 (965)
Q Consensus 422 ~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDiv--t~sK~l~gG~~p 499 (965)
+++|++++ ++|++|.+.+ +++|.++|++||+++|+||+|+ +|.. .+... +..+|++ +++|.++. .+
T Consensus 165 ~~~v~~~~-~~nptG~~~~----l~~i~~l~~~~~~~li~D~~~~-~g~~--~~~~~--~~~~d~~~~s~~K~~g~--~G 232 (406)
T 1kmj_A 165 TRLLAITH-VSNVLGTENP----LAEMITLAHQHGAKVLVDGAQA-VMHH--PVDVQ--ALDCDFYVFSGHKLYGP--TG 232 (406)
T ss_dssp EEEEEEES-BCTTTCCBCC----HHHHHHHHHHTTCEEEEECTTT-TTTS--CCCHH--HHTCSEEEEEGGGTTSC--TT
T ss_pred CeEEEEeC-CCccccCcCC----HHHHHHHHHHcCCEEEEEchhh-cCCC--CCccc--ccCCCEEEEEchhccCC--CC
Confidence 78899999 8999999887 9999999999999999999997 4433 11222 2357887 58998843 24
Q ss_pred ceeeeecHHHHHhhhccCCccc---------------ccccCCCCCCHHHHHHHH-HHHHHHhcc---cHHHHHHHHHHH
Q psy8199 500 LSLVMTTDKIYNSIYYKNNINI---------------FLHSHSYSGNPLACCAAL-ATLEIFNKD---NILQRISQDMKK 560 (965)
Q Consensus 500 ig~v~~~~~i~~~~~~~~~~~~---------------~~~~~t~~~~~~~~aaa~-a~L~~~~~~---~~~~~~~~~~~~ 560 (965)
+|++++++++++.+........ .....+.+.+++++++++ ++++.+.+. .+.++++++.++
T Consensus 233 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~ 312 (406)
T 1kmj_A 233 IGILYVKEALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHY 312 (406)
T ss_dssp CEEEEECHHHHHHCCCSSCSTTSEEEEETTTEEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred cEEEEEeHHHHhhcCCcccCCCceeecccccccccCCCchhccCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 8999999999887754110000 000122344666666665 788877542 466777788888
Q ss_pred HHHHHHcccCCCceeeeec--eeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec-------------CCEEEEeC
Q psy8199 561 ITKALTSLITHPKIINFRQ--KGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-------------GNTVYLMP 625 (965)
Q Consensus 561 l~~~L~~l~~~~~i~~v~g--~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-------------~~~lR~~p 625 (965)
+.+.|+++ +++..+.+ .|.++.+.+. +. ....+.+.|.++||.+.++ .+++|+++
T Consensus 313 l~~~L~~~---~~~~~~~~~~~~~~~~~~~~--~~-----~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~g~~~~iRis~ 382 (406)
T 1kmj_A 313 ALSQLESV---PDLTLYGPQNRLGVIAFNLG--KH-----HAYDVGSFLDNYGIAVRTGHHCAMPLMAYYNVPAMCRASL 382 (406)
T ss_dssp HHHHHTTS---TTEEEESCTTCCSEEEEEET--TC-----CHHHHHHHHHHTTEECEEECTTCHHHHHHTTCSCEEEEEC
T ss_pred HHHHHhcC---CCeEEecCCCcCCEEEEEEC--CC-----CHHHHHHHHhhCCcEEEeccccchHHHHhcCCCCeEEEEe
Confidence 88888664 45554445 7888888763 10 1345778889999999864 27899999
Q ss_pred CcccCHHHHHHHHHhhhccc
Q psy8199 626 PYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 626 ~~~~t~~~i~~~~~~l~~~~ 645 (965)
+..+++++++++++++.+.+
T Consensus 383 ~~~~t~~~i~~~~~~l~~~~ 402 (406)
T 1kmj_A 383 AMYNTHEEVDRLVTGLQRIH 402 (406)
T ss_dssp CTTCCHHHHHHHHHHHHHHH
T ss_pred ecCCCHHHHHHHHHHHHHHH
Confidence 99899999999999887643
|
| >3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.6e-23 Score=239.85 Aligned_cols=341 Identities=6% Similarity=-0.013 Sum_probs=227.5
Q ss_pred Ccccccccccchh---ccCCCCCHHHHHHHHHHHhh-ccccccCCCCcHHHHHHHHHHHhhcCCCCC---eEEEcCChhH
Q psy8199 253 GKRYLDAISSWWV---NLFGHSNSYINKALKNQLNK-LEHVMLSNLTHKPVIKLSEKLSSLTQYKLG---HCFYGSDGAS 325 (965)
Q Consensus 253 G~~ylD~~~~~~~---~~lGh~~p~v~~av~~~~~~-~~~~~~~~~~~~~~~~la~~l~~~~~~~~~---~v~~~~sGse 325 (965)
|+.++|+..|... ..+. .+|.+.+|+.+.... ...|....+..+....+++.+.... +.+ ++++++||++
T Consensus 37 ~~~~i~l~~g~~~~~~~~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~--~~~~~~~i~~t~g~~~ 113 (418)
T 3rq1_A 37 RENVVNGTLGAIHDEEGNLV-FLKTVKEEYLSLSDSEHVGYAPIAGIPDFLCAAEKECFGNF--RPEGHIRSIATAGGTG 113 (418)
T ss_dssp GGGCEECCSSCCBCTTSCBC-CCHHHHHHHHTCCHHHHHSCCCTTCCHHHHHHHHHHHHGGG--CCSSEEEEEEESHHHH
T ss_pred CCCeEECCCCcccCCCCCcc-ccHHHHHHHHHhcccccCCCCCCCChHHHHHHHHHHHhccc--CccccccEEECCchHH
Confidence 5678888777431 1222 467788887654432 2223333345666777777776655 345 9999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHH
Q psy8199 326 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIAR 405 (965)
Q Consensus 326 A~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (965)
|+..+++.... ++++|++.+++|+++.......+. .+..+|.....+.
T Consensus 114 al~~~~~~l~~--------~gd~Vl~~~p~~~~~~~~~~~~g~-------------~~~~v~~~~~~~~----------- 161 (418)
T 3rq1_A 114 GIHHLIHNYTE--------PGDEVLTADWYWGAYRVICSDTGR-------------TLVTYSLFDEHNN----------- 161 (418)
T ss_dssp HHHHHHHHHSC--------TTCEEEEESSCCTHHHHHHHHTTC-------------EEEEECSBCTTSS-----------
T ss_pred HHHHHHHHhcC--------CCCEEEECCCCchhHHHHHHHcCC-------------EEEEEeeeCCCCC-----------
Confidence 99999987632 568899999999988544333322 2334443211111
Q ss_pred HHHHHHHHHHHhC--CCcEEEEEEcccc-ccCCCcccCChHHHHHHHHHHH------hcCCeEEEeccccCCCcccc---
Q psy8199 406 CAIFDLEILLKKN--HNKIAAIIIEPLV-QCAGGMIMYDSIYLKLVREICN------NYNIHLIADEIAVGCGRTGK--- 473 (965)
Q Consensus 406 ~d~~~le~~l~~~--~~~~aaii~ep~v-~~~~G~~~~~~~~l~~l~~l~~------~~g~llI~DEv~tg~gr~G~--- 473 (965)
.|+++|++++.+. ....++|+++. + +|++|.+. +.+.+++|.++|+ +||+++|+||+|.+|++.|.
T Consensus 162 ~d~~~l~~~l~~~~~~~~~~~vi~~~-p~~NPtG~~~-~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~ 239 (418)
T 3rq1_A 162 FNHEAFQNRVNELAAKQTNVVVIFNT-PGNNPTGYSI-EDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEKDEVR 239 (418)
T ss_dssp BCHHHHHHHHHHHHHHCSEEEEEEEC-SSCTTTCCCC-CHHHHHHHHHHHHHHHHTSSCEEEEEEECTTGGGSSCHHHHH
T ss_pred cCHHHHHHHHHHhhccCCCEEEEEeC-CCCCCCCCCC-CHHHHHHHHHHHHHhhhccCCCeEEEEecccccccCChHHHH
Confidence 2678888888642 13344666665 4 89999776 6667999999999 89999999999999987764
Q ss_pred cccccccCCCcce---e--eeccccCCCcccceeeee---cHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHH
Q psy8199 474 FFACEHAEIWPDF---L--CLSKGITGGYLPLSLVMT---TDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIF 545 (965)
Q Consensus 474 ~~~~~~~~~~pDi---v--t~sK~l~gG~~pig~v~~---~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~ 545 (965)
.+.....++.+|+ + +|||.++..++++|++++ ++++++.+... ......+.+.+.++++++++.++|+..
T Consensus 240 ~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~~l~~~ 317 (418)
T 3rq1_A 240 AFFNKFSHLPKEILTCVCYSLSKGFTMYGQRVGAMIGISDDEEIADEFFEV--NKSTSRATWSNICRPAMRTMANIVADP 317 (418)
T ss_dssp GGGGGGTTCCTTEEEEEEEESTTTTTCCSSCCEEEEEEESSHHHHHHHHHH--HHHHHHHHTSSCCHHHHHHHHHHHTCH
T ss_pred HHHHHHHhcCCCceEEEEEeCCCCCcCcCCcceEEEEEeCCHHHHHHHHHH--HHHHHhhccCCCchHHHHHHHHHhCCH
Confidence 2233344566773 2 689988743389999998 89998877641 000111223457888988888887422
Q ss_pred h------c--ccHHHHHHHHHHHHHHHHHcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec
Q psy8199 546 N------K--DNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI 617 (965)
Q Consensus 546 ~------~--~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~ 617 (965)
. + ..+.++++++.+++.+.|+++ ++..+.+.|.++.+... .+ ..++.+.|.++||++.|+
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~-~~-------~~~~~~~l~~~gi~v~~g 385 (418)
T 3rq1_A 318 AKFKEYEAERNCYYQLIRDRADIFKQEAAQV----GLPMLPYRGGFFITIPT-DS-------ANAICEELKKEHIYVIAL 385 (418)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----TCCCCCCCSSSEEEEEC-TT-------HHHHHHHHHHTTEECEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCCCCCCCceEEEEcCC-CC-------HHHHHHHHHhCCEEEecC
Confidence 1 1 134566777777888888765 33444555554443211 11 345777889999999998
Q ss_pred CCEEEEeCCcccCHHHHHHHHHhhhccc
Q psy8199 618 GNTVYLMPPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 618 ~~~lR~~p~~~~t~~~i~~~~~~l~~~~ 645 (965)
++++||+.. .+++++++++++++.+++
T Consensus 386 ~~~iRis~~-~~~~~~i~~~~~~l~~~l 412 (418)
T 3rq1_A 386 ANGIRIAAC-GIPKCQMTGLAEKIYNAM 412 (418)
T ss_dssp SSEEEEEGG-GSCHHHHTTHHHHHHHHH
T ss_pred CCCeEEEEe-cCCHHHHHHHHHHHHHHH
Confidence 899999943 369999999999887654
|
| >3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.91 E-value=5.8e-23 Score=233.42 Aligned_cols=329 Identities=13% Similarity=-0.004 Sum_probs=222.4
Q ss_pred CCHHHHHHHHHHHhhcc-ccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhc-----CCC
Q psy8199 271 SNSYINKALKNQLNKLE-HVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNK-----GFL 344 (965)
Q Consensus 271 ~~p~v~~av~~~~~~~~-~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~-----g~~ 344 (965)
.+|++.+|+.+++.... .........+...++++++++.++...+++++++||++|++.|+++++..+..+ +..
T Consensus 42 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~i~~~~ggt~a~~~~~~~~~~~~~~~~~~~~~~~ 121 (397)
T 3f9t_A 42 VLPITRKIVDIFLETNLGDPGLFKGTKLLEEKAVALLGSLLNNKDAYGHIVSGGTEANLMALRCIKNIWREKRRKGLSKN 121 (397)
T ss_dssp CCTHHHHHHHHHTTCCTTSGGGBHHHHHHHHHHHHHHHHHTTCTTCEEEEESCHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred CcHHHHHHHHHHHhhcCCCcccChhHHHHHHHHHHHHHHHhCCCCCCEEEecCcHHHHHHHHHHHHHHHHhhhhhcccCC
Confidence 47899999999887632 111111235566789999999998777899999999999999999987642111 223
Q ss_pred CceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEE
Q psy8199 345 NKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAA 424 (965)
Q Consensus 345 ~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aa 424 (965)
++++|++.+++|+++.......+ ..+..+|...... .|+++|++++++. ++++
T Consensus 122 ~gd~vl~~~~~~~~~~~~~~~~g-------------~~~~~v~~~~~~~------------~d~~~l~~~i~~~--~~~~ 174 (397)
T 3f9t_A 122 EHPKIIVPITAHFSFEKGREMMD-------------LEYIYAPIKEDYT------------IDEKFVKDAVEDY--DVDG 174 (397)
T ss_dssp SSCEEEEETTCCTHHHHHHHHHT-------------CEEEEECBCTTSS------------BCHHHHHHHHHHS--CCCE
T ss_pred CCeEEEECCcchhHHHHHHHHcC-------------ceeEEEeeCCCCc------------CCHHHHHHHHhhc--CCeE
Confidence 47889999999988633322221 1344555432211 2688999999752 4556
Q ss_pred EEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCC--cccc---------cccccccCCCcceeeecccc
Q psy8199 425 IIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCG--RTGK---------FFACEHAEIWPDFLCLSKGI 493 (965)
Q Consensus 425 ii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~g--r~G~---------~~~~~~~~~~pDivt~sK~l 493 (965)
|++++ ++|++|.+.+ +++|.++|++||+++|+||+|+++. ..+. .+.+.. ++.+.+.+++|.+
T Consensus 175 v~~~~-~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~K~~ 248 (397)
T 3f9t_A 175 IIGIA-GTTELGTIDN----IEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFSL-GVDSITIDPHKMG 248 (397)
T ss_dssp EEEEB-SCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTGGGTGGGCCGGGCCTTCCCCCSGGG-TCSEEECCTTTTT
T ss_pred EEEEC-CCCCCCCCCC----HHHHHHHHHHhCCeEEEEccccchhhhhcccccccccccccccccc-cCCeEEEcccccc
Confidence 66666 6899998876 9999999999999999999998743 2332 223333 4444455678988
Q ss_pred CCCcccceeeeecHH-HHHhhhccCCc-----ccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHc
Q psy8199 494 TGGYLPLSLVMTTDK-IYNSIYYKNNI-----NIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTS 567 (965)
Q Consensus 494 ~gG~~pig~v~~~~~-i~~~~~~~~~~-----~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~ 567 (965)
++| .++|+++++++ +.+.+...... ....++++...++++++++++.+....-++..++.+++.+++.+.|++
T Consensus 249 ~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 327 (397)
T 3f9t_A 249 HCP-IPSGGILFKDIGYKRYLDVDAPYLTETRQATILGTRVGFGGACTYAVLRYLGREGQRKIVNECMENTLYLYKKLKE 327 (397)
T ss_dssp CCC-SSCEEEEESSGGGGGGTCEECTTSSSSEECSSCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCC-CCceEEEEeCHHHHHhhccCCccccCCCccccccccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666 69999888654 44443220000 000112333345667777777665433355778888899999999987
Q ss_pred ccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecC--CEEEEeCCcccCHHHHHHHHHhhhccc
Q psy8199 568 LITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG--NTVYLMPPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 568 l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~--~~lR~~p~~~~t~~~i~~~~~~l~~~~ 645 (965)
+ ..+.+ ..+.+.++.+.+. + ...+.+.|.++||++.++. +++|++++..+++++++++++++.+.+
T Consensus 328 ~-g~~~~--~~~~~~~~~~~~~--~-------~~~~~~~l~~~gi~v~~~~~~~~~Ri~~~~~~~~e~i~~~~~~l~~~l 395 (397)
T 3f9t_A 328 N-NFKPV--IEPILNIVAIEDE--D-------YKEVCKKLRDRGIYVSVCNCVKALRIVVMPHIKREHIDNFIEILNSIK 395 (397)
T ss_dssp T-TCCBS--SCCSSSEEEEECT--T-------HHHHHHHHHHTTCBCEECSSSSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred C-CCEEE--cCCCccEEEEEeC--C-------HHHHHHHHHhCCeEEeccCCCCEEEEEEcCCCCHHHHHHHHHHHHHhh
Confidence 6 32222 2345666666543 1 3467888999999998865 799999999999999999999987654
|
| >3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.91 E-value=8e-23 Score=228.20 Aligned_cols=319 Identities=11% Similarity=0.054 Sum_probs=214.1
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhH
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGAS 325 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGse 325 (965)
.+++|.+|+++|||.++. ++++ .+|++.+|+.+++..... ++.....++.++++++++.+.+++++++||++
T Consensus 7 ~~~~~~~g~~~id~~~~~--~~~~-~~~~v~~a~~~~~~~~~~-----y~~~~~~~lr~~la~~~~~~~~~i~~t~g~~~ 78 (350)
T 3fkd_A 7 DEGITPLSSEIVNFSTTV--WTDG-DKDHLEKHLVENLNCIRH-----YPEPDAGTLRQMLAKRNSVDNNAILVTNGPTA 78 (350)
T ss_dssp ---------CCEECSCCS--CCCS-CCHHHHHHHHHTGGGGGS-----CCCTTCHHHHHHHHHHTTCCGGGEEEESHHHH
T ss_pred chHhhhccccEEEccCCC--CCCC-CCHHHHHHHHHhHhHHhc-----CCCCcHHHHHHHHHHHhCcCHHHEEEcCCHHH
Confidence 468899999999998874 4566 789999999988854322 22223357888888888766789999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecC-CCCCCCCCCCChhHHH
Q psy8199 326 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITT-PDSRNINKGNSANEIA 404 (965)
Q Consensus 326 A~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 404 (965)
|++.+++++ . +++|++.+++|+++.......+. .+..+|. +.....
T Consensus 79 al~~~~~~l---------~-gd~Vi~~~p~~~~~~~~~~~~g~-------------~~~~v~~~~~~~~~---------- 125 (350)
T 3fkd_A 79 AFYQIAQAF---------R-GSRSLIAIPSFAEYEDACRMYEH-------------EVCFYPSNEDIGEA---------- 125 (350)
T ss_dssp HHHHHHHHT---------T-TCEEEEEESCCHHHHHHHHHTTC-------------EEEEEETTSCGGGS----------
T ss_pred HHHHHHHHH---------C-CCEEEEeCCCcHHHHHHHHHcCC-------------eEEEEecCCccccC----------
Confidence 999999876 2 67899999999987543333221 2334443 210000
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCC-
Q psy8199 405 RCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIW- 483 (965)
Q Consensus 405 ~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~- 483 (965)
++ +++.+|+++. ++|++|.+.+ .+.+++|.+.|+++ ++|+||+|++|+..+.... ...+..
T Consensus 126 --~~-----------~~~~~v~i~~-p~nptG~~~~-~~~l~~l~~~~~~~--~li~Dea~~~~~~~~~~~~-~~~~~~~ 187 (350)
T 3fkd_A 126 --DF-----------SNMDFCWLCN-PNNPDGRLLQ-RTEILRLLNDHPDT--TFVLDQSYVSFTTEEVIRP-ADIKGRK 187 (350)
T ss_dssp --CC-----------TTCSEEEEES-SCTTTCCCCC-HHHHHHHHHHCTTS--EEEEECTTTTSCSSCCCCG-GGGTTCS
T ss_pred --cc-----------CCCCEEEEeC-CCCCcCCCCC-HHHHHHHHHhCCCC--EEEEECchhhhccCcchhh-HHhhcCC
Confidence 00 2344455555 5999998875 44466666666554 9999999998877664322 222222
Q ss_pred --cceeeeccccC-CCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh--cccHHHHHHHHH
Q psy8199 484 --PDFLCLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN--KDNILQRISQDM 558 (965)
Q Consensus 484 --pDivt~sK~l~-gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~--~~~~~~~~~~~~ 558 (965)
..+.+|||.++ .| +++|++++++++++.+.. ...+++.++++++++.++|+... .+.. ++..++.
T Consensus 188 ~~i~~~S~sK~~~~~G-~r~G~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~ 257 (350)
T 3fkd_A 188 NLVMVYSFSHAYGIPG-LRIGYIVANKDFMKRVAA--------FSTPWAVNALAIEAAKFILIHPAQFTLPI-RKWQRNT 257 (350)
T ss_dssp SEEEEEESHHHHSCGG-GCCEEEECCHHHHHHHHT--------TCCTTCSCHHHHHHHHHHHHCTTTTCCCH-HHHHHHH
T ss_pred CEEEEecCchhccCcc-hheEeEEeCHHHHHHHHH--------hCCCCCCCHHHHHHHHHHHhCHHHHHHHH-HHHHHHH
Confidence 23347899887 45 899999999999988875 23467789999999999997543 1223 3333677
Q ss_pred HHHHHHHHcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHH-cCcEEeec-------CCEEEEeCCcccC
Q psy8199 559 KKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALK-NELLLRPI-------GNTVYLMPPYILN 630 (965)
Q Consensus 559 ~~l~~~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~-~Gi~~~~~-------~~~lR~~p~~~~t 630 (965)
+++.+.|+++ |++...++.|.++.+.+. .. ....+.+.|.+ +||.+.++ .+++|++.. +
T Consensus 258 ~~l~~~L~~~---~~~~~~~~~~~~~~~~~~--~~-----~~~~l~~~L~~~~gi~v~~g~~f~~~~~~~iRis~~---~ 324 (350)
T 3fkd_A 258 VDFITALNRL---DGVEVHPSGTTFFLLRLK--KG-----TAAELKKYMLEEYNMLIRDASNFRGLDESYVRITTQ---R 324 (350)
T ss_dssp HHHHHHHHHS---TTEEECCCSSSEEEEEES--SS-----CHHHHHHHHHHTTCEECEECTTSTTCCTTEEEEECC---C
T ss_pred HHHHHHHhcC---CCcEECCCCCcEEEEECC--CC-----CHHHHHHHHHHHCCEEEEeCccCCCCCCCEEEEEcC---C
Confidence 7777777654 667667778888877775 21 24567888888 99999874 368999943 7
Q ss_pred HHHHHHHHHhhhcccc
Q psy8199 631 KNEIQHMTSAIFQTFN 646 (965)
Q Consensus 631 ~~~i~~~~~~l~~~~~ 646 (965)
+++++++++++.+...
T Consensus 325 ~~~~~~l~~al~~~~~ 340 (350)
T 3fkd_A 325 PAQNQLFIKALETFLE 340 (350)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7888888887765443
|
| >1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.90 E-value=4e-23 Score=236.53 Aligned_cols=348 Identities=11% Similarity=-0.001 Sum_probs=222.5
Q ss_pred Ccccccccccchhc-cCCCCCHHHHHHHHHHHhhcc--ccccCCCCcHHHHHHHHHHHhh------c--CCCCCeEEEcC
Q psy8199 253 GKRYLDAISSWWVN-LFGHSNSYINKALKNQLNKLE--HVMLSNLTHKPVIKLSEKLSSL------T--QYKLGHCFYGS 321 (965)
Q Consensus 253 G~~ylD~~~~~~~~-~lGh~~p~v~~av~~~~~~~~--~~~~~~~~~~~~~~la~~l~~~------~--~~~~~~v~~~~ 321 (965)
.+.++||.+|.... +-...+|++.+|+.++++... .|....+..+....+++.+.+. . +.+.++|++++
T Consensus 32 ~~~~i~l~~g~p~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~la~~~~~~~~~~~~~~~~~~~~~v~~~~ 111 (416)
T 1bw0_A 32 PKPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQECNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDNVVLCS 111 (416)
T ss_dssp CSCCEECCCCCTTTTSCSCCCHHHHHHHHHHHHTTCSSSCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGGGEEEES
T ss_pred CCCeEEecCcCCCcccCCCCCHHHHHHHHHHhhCCccCCcCCCCCCHHHHHHHHHHHHhhhcccccCCCCCCcceEEEeC
Confidence 35789998886542 123478999999999987632 1221223345555566655521 1 13567999999
Q ss_pred ChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChh
Q psy8199 322 DGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSAN 401 (965)
Q Consensus 322 sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (965)
||++|++.+++.+.. ++++|++.+++||++.......+. .+..+|.......
T Consensus 112 g~~~al~~~~~~l~~--------~gd~vl~~~p~y~~~~~~~~~~g~-------------~~~~v~~~~~~~~------- 163 (416)
T 1bw0_A 112 GGSHGILMAITAICD--------AGDYALVPQPGFPHYETVCKAYGI-------------GMHFYNCRPENDW------- 163 (416)
T ss_dssp HHHHHHHHHHHHHCC--------TTCEEEEEESCCTHHHHHHHHTTC-------------EEEEEEEEGGGTT-------
T ss_pred ChHHHHHHHHHHhCC--------CCCEEEEcCCCcHhHHHHHHHcCc-------------EEEEeecCcccCC-------
Confidence 999999999998732 468899999999998543332221 1223332110000
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccc-----ccc
Q psy8199 402 EIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK-----FFA 476 (965)
Q Consensus 402 ~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~-----~~~ 476 (965)
..|+++|++++.+ ...++++++| +|++|.+. +++++++|.++|++||+++|+||+|++|.+.|. +..
T Consensus 164 ---~~d~~~l~~~l~~--~~~~v~i~~p--~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~ 235 (416)
T 1bw0_A 164 ---EADLDEIRRLKDD--KTKLLIVTNP--SNPCGSNF-SRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTS 235 (416)
T ss_dssp ---EECHHHHHHHCCT--TEEEEEEESS--CTTTCCCC-CHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCC
T ss_pred ---CCCHHHHHHHhcc--CCeEEEEeCC--CCCCCccc-CHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCCCccC
Confidence 0267888888752 2334455555 88889765 788999999999999999999999999866654 222
Q ss_pred ccccCCCcce---eeeccccCCCcccceeeeecHH--HHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc---c
Q psy8199 477 CEHAEIWPDF---LCLSKGITGGYLPLSLVMTTDK--IYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK---D 548 (965)
Q Consensus 477 ~~~~~~~pDi---vt~sK~l~gG~~pig~v~~~~~--i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~---~ 548 (965)
...++..+++ .++||+++.+++++|+++++++ +++.+... ... .+..+++.|+++++++.++|+...+ +
T Consensus 236 ~~~~~~~~~~i~~~s~sK~~~~~Glr~G~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~a~~~~l~~~~~~~~~ 312 (416)
T 1bw0_A 236 VADFETTVPRVILGGTAKNLVVPGWRLGWLLYVDPHGNGPSFLEG--LKR-VGMLVCGPCTVVQAALGEALLNTPQEHLD 312 (416)
T ss_dssp TTSSCCSCCEEEEEESTTTTSCGGGCCEEEEEECTTCSCHHHHHH--HHH-HHHHHTCSCHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHccCCCcEEEEecchhhCCCCCceEEEEEeeCchhhHHHHHHH--HHH-HhccccCCCcHHHHHHHHHHhcccHHHHH
Confidence 2222222233 3689987543389999998763 44433310 000 1224677899999999999974322 2
Q ss_pred cHHHHHHHHHHHHHHHHHcccCCCceeeeece-eEEEEEEEeecCccchhhHHHHHHHHH-HHcCcEEeec-----CCEE
Q psy8199 549 NILQRISQDMKKITKALTSLITHPKIINFRQK-GMIWAFDVIIEDPEQIETFSKKFFVAA-LKNELLLRPI-----GNTV 621 (965)
Q Consensus 549 ~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~-G~~~~i~~~~~~~~~~~~~~~~~~~~l-~~~Gi~~~~~-----~~~l 621 (965)
...++++++.+++.+.|+++ |++..+.+. |+++.+.+. ............+.+.| .++||++.|+ .+++
T Consensus 313 ~~~~~~~~~~~~l~~~L~~~---~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~i 388 (416)
T 1bw0_A 313 QIVAKIEESAMYLYNHIGEC---IGLAPTMPRGAMYLMSRID-LEKYRDIKTDVEFFEKLLEEENVQVLPGTIFHAPGFT 388 (416)
T ss_dssp HHHHHHHHHHHHHHHHHTTS---TTEEECCCCBTTEEEEEEC-GGGBSSCCSHHHHHHHHHHHHCEECEEGGGGTCTTEE
T ss_pred HHHHHHHHHHHHHHHHHHhC---CCCcccCCCeeEEEEEeCC-HHHcCCCCCHHHHHHHHHHHCCEEEecccccCCCCeE
Confidence 35566677777777777643 566655444 666666664 11000001134566777 4899999884 3689
Q ss_pred EEeCCcccCHHHHHHHHHhhhccc
Q psy8199 622 YLMPPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 622 R~~p~~~~t~~~i~~~~~~l~~~~ 645 (965)
|+++ ..++++++++++++.+.+
T Consensus 389 Ris~--~~~~e~l~~~l~~l~~~l 410 (416)
T 1bw0_A 389 RLTT--TRPVEVYREAVERIKAFC 410 (416)
T ss_dssp EEEC--CSCHHHHHHHHHHHHHHH
T ss_pred EEEe--cCCHHHHHHHHHHHHHHH
Confidence 9996 478899999998887654
|
| >1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.90 E-value=9.3e-23 Score=233.73 Aligned_cols=341 Identities=10% Similarity=0.076 Sum_probs=230.3
Q ss_pred cCCcccccccccchhccCCCCCHHHHHHHHHHHhhcccc-c--cCCCC---cHHHHHHHHHHHhhcCC-CCCeEEEcCCh
Q psy8199 251 FSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHV-M--LSNLT---HKPVIKLSEKLSSLTQY-KLGHCFYGSDG 323 (965)
Q Consensus 251 ~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~-~--~~~~~---~~~~~~la~~l~~~~~~-~~~~v~~~~sG 323 (965)
.+|+.++++..+.. ++.+|++.+|+.++++..... + ...+. .+...++.+.++++++. +.+++++++||
T Consensus 24 ~~g~~~i~l~~~~~----~~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~ 99 (420)
T 1t3i_A 24 INGHPLVYLDNAAT----SQKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPREIVYTRNA 99 (420)
T ss_dssp ETTEECEECBTTTC----CCCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSH
T ss_pred cCCCceEEecCCcc----CCCCHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEcCCh
Confidence 35677777766532 468999999999998763211 1 11121 35568899999999975 56899999999
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHH
Q psy8199 324 ASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEI 403 (965)
Q Consensus 324 seA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (965)
++|++.+++.+++.+ ..++++|++.+++||+......... ......+..+|.+... .
T Consensus 100 t~a~~~~~~~~~~~~----~~~gd~Vl~~~~~~~~~~~~~~~~~---------~~~g~~~~~v~~~~~~-~--------- 156 (420)
T 1t3i_A 100 TEAINLVAYSWGMNN----LKAGDEIITTVMEHHSNLVPWQMVA---------AKTGAVLKFVQLDEQE-S--------- 156 (420)
T ss_dssp HHHHHHHHHHTHHHH----CCTTCEEEEETTCCGGGTHHHHHHH---------HHHCCEEEEECBCTTS-S---------
T ss_pred HHHHHHHHHHhhhcc----cCCCCEEEECcchhHHHHHHHHHHH---------HhcCcEEEEeccCCCC-C---------
Confidence 999999999874210 0356889999999999531110000 0001123444443211 1
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCC
Q psy8199 404 ARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIW 483 (965)
Q Consensus 404 ~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~ 483 (965)
.|+++|++++. +++++|++++ ++|++|.+.+ +++|.++|++||+++|+||+|+ +|... +....+ .
T Consensus 157 --~d~~~l~~~l~---~~~~~v~~~~-~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~~~~~--~~~~~~--~ 221 (420)
T 1t3i_A 157 --FDLEHFKTLLS---EKTKLVTVVH-ISNTLGCVNP----AEEIAQLAHQAGAKVLVDACQS-APHYP--LDVQLI--D 221 (420)
T ss_dssp --BCHHHHHHHCC---TTEEEEEEES-BCTTTCBBCC----HHHHHHHHHHTTCEEEEECTTT-TTTSC--CCHHHH--T
T ss_pred --cCHHHHHHhhC---CCceEEEEeC-CcccccCcCC----HHHHHHHHHHcCCEEEEEhhhc-cCCcc--Cchhhc--C
Confidence 26788888875 3678888988 8999999887 8999999999999999999997 44321 122222 3
Q ss_pred cceeeec--cccCCCcccceeeeecHHHHHhhhccCCccc--------------ccccCCCCCCHHHHHHHHH-HHHHHh
Q psy8199 484 PDFLCLS--KGITGGYLPLSLVMTTDKIYNSIYYKNNINI--------------FLHSHSYSGNPLACCAALA-TLEIFN 546 (965)
Q Consensus 484 pDivt~s--K~l~gG~~pig~v~~~~~i~~~~~~~~~~~~--------------~~~~~t~~~~~~~~aaa~a-~L~~~~ 546 (965)
+|++++| |.+++ .++|++++++++++.+........ .....+++.++++++++++ +|+.+.
T Consensus 222 ~di~~~s~sK~~~~--~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~ 299 (420)
T 1t3i_A 222 CDWLVASGHKMCAP--TGIGFLYGKEEILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLT 299 (420)
T ss_dssp CSEEEEEGGGTTSC--TTCEEEEECHHHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHH
T ss_pred CCEEEEehhhhcCC--CceEEEEEchHHHhhcCceecCCCccccccccccCCCCchhhccCCCccHHHHHHHHHHHHHHH
Confidence 7888765 95543 358999999999887754110000 0011223456676666665 787765
Q ss_pred c---ccHHHHHHHHHHHHHHHHHcccCCCceeeeec------eeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec
Q psy8199 547 K---DNILQRISQDMKKITKALTSLITHPKIINFRQ------KGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI 617 (965)
Q Consensus 547 ~---~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g------~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~ 617 (965)
+ +.+.++.+++.+++.+.|+++ +++..+.+ .|.++.+.+. + . ....+.+.|.++||.+.++
T Consensus 300 ~~~~~~~~~~~~~~~~~l~~~L~~~---~g~~~~~~~~~~~~~~~~~~~~~~--~-~----~~~~~~~~l~~~gi~v~~~ 369 (420)
T 1t3i_A 300 DLGMENIHNYEVELTHYLWQGLGQI---PQLRLYGPNPKHGDRAALASFNVA--G-L----HASDVATMVDQDGIAIRSG 369 (420)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHTC---TTEEEESCCGGGSCBCSEEEEEET--T-B----CHHHHHHHHHTTTEECBCS
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHhC---CCeEEeCCCccccccCCEEEEEEC--C-C----CHHHHHHHHHHCCeEEeec
Confidence 4 456777888888888888765 44443332 4788888763 1 0 1345778889999999876
Q ss_pred -------------CCEEEEeCCcccCHHHHHHHHHhhhccc
Q psy8199 618 -------------GNTVYLMPPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 618 -------------~~~lR~~p~~~~t~~~i~~~~~~l~~~~ 645 (965)
.+++|++++..+++++++++++++.+..
T Consensus 370 ~~~~~~~~~~~g~~~~iRis~~~~~~~~~i~~~~~~l~~~~ 410 (420)
T 1t3i_A 370 HHCTQPLHRLFDASGSARASLYFYNTKEEIDLFLQSLQATI 410 (420)
T ss_dssp CTTCHHHHHHTTCCCCEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred cccchHHHHhcCCCCeEEEecCCCCCHHHHHHHHHHHHHHH
Confidence 4689999998889999999998887543
|
| >3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=99.90 E-value=5.1e-23 Score=232.22 Aligned_cols=339 Identities=12% Similarity=0.053 Sum_probs=221.5
Q ss_pred EEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHH
Q psy8199 247 KLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASA 326 (965)
Q Consensus 247 ~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA 326 (965)
.++|.+++.+.++...++..+++|..++..+.+. ++++++++.++.. +.++|++|||+|
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~--------------------~~~~~l~~~~~~~-~~v~~~~sgt~a 63 (379)
T 3ke3_A 5 LRQDIDPNGLLEYSVVYTDRALNHMSKAFQEVMN--------------------DLLSNLKTVYNAE-AAVIIPGSGTYG 63 (379)
T ss_dssp ---CCSTTSCCCCCSSCCTTSCCTTSHHHHHHHH--------------------HHHHHHHHHHTCS-EEEEEESCHHHH
T ss_pred hhccCCHHHHHHHHHhccCCCCCCCCHHHHHHHH--------------------HHHHHHHHHhCCC-CEEEEcCChhHH
Confidence 5789999999999877777778888877654333 4456677777644 678899999999
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHH
Q psy8199 327 VEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARC 406 (965)
Q Consensus 327 ~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (965)
++++++.+ .++++||+++++|||.+...+.... .....+.+++.+......+.. .+...
T Consensus 64 ~~~~~~~~---------~~gd~vi~~~~~~~~~~~~~~~~~~---------g~~~~~~~~~~~~~g~~~~~~---~~~~~ 122 (379)
T 3ke3_A 64 MEAVARQL---------TIDEDCLIIRNGWFSYRWTQILEKG---------KFAKSSTVLTAERTEDTEAPK---PFAPV 122 (379)
T ss_dssp HHHHHHHH---------CTTCEEEEEECSHHHHHHHHHHHHH---------CCSSEEEEEECEESSCCSSCC---CEECC
T ss_pred HHHHHHhC---------CCCCeEEEEeCCchhHHHHHHHHHh---------CCCCceEEEeccccccccccC---CCCCC
Confidence 99988654 3678999999999997543322110 001122333332100000000 00013
Q ss_pred HHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcce
Q psy8199 407 AIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDF 486 (965)
Q Consensus 407 d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDi 486 (965)
|++++++++++. ++.+|++.. +.+++|.+. +.+++++|+++|++||+++|+||+++ | +..+..+.+++...+
T Consensus 123 d~~~l~~~i~~~--~~~~v~~~~-~~~~~G~~~-~~~~l~~i~~~~~~~~~~li~D~~~~--g--~~~~~~~~~~~d~~~ 194 (379)
T 3ke3_A 123 DIETAVAKIKED--KSAIVYAPH-VETSSGIIL-SEEYIKALSEAVHSVGGLLVIDCIAS--G--CVWLDMKELGIDVLI 194 (379)
T ss_dssp CHHHHHHHHHHH--TCSEEEEES-EETTTTEEC-CHHHHHHHHHHHHHTTCEEEEECTTC--T--TCCCCHHHHTCSEEE
T ss_pred CHHHHHHHHhhc--CCcEEEEEe-ecCCCceeC-CHHHHHHHHHHHHHcCCEEEEEeccc--C--CccccccccCCCEEE
Confidence 788999888642 344566665 577788665 68899999999999999999999987 4 334555566664444
Q ss_pred eeeccccCCCcccceeeeecHHHHHhhhccCCcccccc-----------------cCCCCCCHHHHHHHHHHHHHHhcc-
Q psy8199 487 LCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLH-----------------SHSYSGNPLACCAALATLEIFNKD- 548 (965)
Q Consensus 487 vt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~-----------------~~t~~~~~~~~aaa~a~L~~~~~~- 548 (965)
.+++|+++|+ .++|++++++++++.+... ...++.+ ..+++.|+.+++++.++|+.+.++
T Consensus 195 ~s~~K~l~~~-~g~g~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~~~~~~a~~aal~~~~~~g 272 (379)
T 3ke3_A 195 SAPQKGWSST-PCAGLVMLSAAAIKKVEST-ESNCFSLDLKQWLTIMRAYENGGHAYHATMPTDSLRQFRDAILEAKEIG 272 (379)
T ss_dssp ECTTTTTCSC-CCEEEEEECHHHHHHHHTC-CCSCSTTCHHHHHHHHHHHHTTSCCCSSCCCHHHHHHHHHHHHHHHHHC
T ss_pred ecchhhcCCC-CceEEEEECHHHHHhhhcC-CCCceeecHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHhc
Confidence 4566999876 4789999999998877541 1111111 123467888888888999987654
Q ss_pred --cHHHHHHHHHHHHHHHHHcccCCCceeee-eceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec--------
Q psy8199 549 --NILQRISQDMKKITKALTSLITHPKIINF-RQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-------- 617 (965)
Q Consensus 549 --~~~~~~~~~~~~l~~~L~~l~~~~~i~~v-~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-------- 617 (965)
+..++.+++.+++++.|+++ ....+..- ...+.+..+... + . ...+.+.|.++||++.++
T Consensus 273 ~~~~~~~~~~l~~~l~~~l~~~-g~~~~~~~~~~~~~i~~~~~~--~----~--~~~~~~~L~~~Gi~v~~g~~~~~~~~ 343 (379)
T 3ke3_A 273 FDILRDAQWELGNRVRKVLTDK-GIESVAAEGFEAPGVVVSYTE--R----D--DMHKGSAFAEAGLQIAAGVPLKVGEP 343 (379)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT-TCCBSBCTTCBCSSEEEEECS--C----H--HHHSSHHHHHTTCCCEECCCCSSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHc-CCEecCCccccCceEEEEccC--C----c--chHHHHHHHHCCeEEeCCcccccccc
Confidence 56777888889999988876 11111110 011223333221 1 1 112256788999988764
Q ss_pred --CCEEEEeCCcccCHHHHHHHHHhhhcccc
Q psy8199 618 --GNTVYLMPPYILNKNEIQHMTSAIFQTFN 646 (965)
Q Consensus 618 --~~~lR~~p~~~~t~~~i~~~~~~l~~~~~ 646 (965)
++.+|++++..+++++++++++++.+.+.
T Consensus 344 ~~~~~lRis~~~~~t~~di~~~~~~l~~~l~ 374 (379)
T 3ke3_A 344 DNFKTFRLGLFGLDKLTDIDGTVERFEKALD 374 (379)
T ss_dssp TTCCEEEEECCSHHHHTCHHHHHHHHHHHHH
T ss_pred CcCCEEEEeCCcCCCHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999876554
|
| >1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.90 E-value=7.1e-23 Score=232.56 Aligned_cols=329 Identities=13% Similarity=0.087 Sum_probs=228.2
Q ss_pred CCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCC-eEEEcCChhHHHHHH
Q psy8199 252 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLG-HCFYGSDGASAVEVA 330 (965)
Q Consensus 252 dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~-~v~~~~sGseA~~~A 330 (965)
+++.|+|..+. ++.+|++.+|+.+++.. ++. ....+...++++++++.++.+.+ ++++++||++|++.+
T Consensus 32 ~~~~~l~~~~~------~~~~~~v~~a~~~~~~~--~~~--~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~al~~~ 101 (393)
T 1vjo_A 32 VPSRLLLGPGP------SNAHPSVLQAMNVSPVG--HLD--PAFLALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEAT 101 (393)
T ss_dssp CCCCEECSSSC------CCCCHHHHHHHSSCCCC--TTS--HHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHH
T ss_pred CccceeccCCC------CCCCHHHHHHHhccccc--ccC--HHHHHHHHHHHHHHHHHhCCCCCcEEEEeCchHHHHHHH
Confidence 34678886543 45789999999876643 221 11346678899999999887667 899999999999999
Q ss_pred HHHHHHHHHhcCCCCceEEEEEcCCccC--CccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHH
Q psy8199 331 LKMSFHYWYNKGFLNKKKFICLQNSYHG--ETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAI 408 (965)
Q Consensus 331 l~~a~~~~~~~g~~~~~~vi~~~~~yHg--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 408 (965)
++.+. .++++|++.+++||+ +....... ...+..+|.+... . .|+
T Consensus 102 ~~~~~--------~~gd~Vl~~~~~~~~~~~~~~~~~~-------------g~~~~~v~~~~~~-~-----------~d~ 148 (393)
T 1vjo_A 102 IANAV--------EPGDVVLIGVAGYFGNRLVDMAGRY-------------GADVRTISKPWGE-V-----------FSL 148 (393)
T ss_dssp HHHHC--------CTTCEEEEEESSHHHHHHHHHHHHT-------------TCEEEEEECCTTC-C-----------CCH
T ss_pred HHhcc--------CCCCEEEEEcCChhHHHHHHHHHHc-------------CCceEEEecCCCC-C-----------CCH
Confidence 99873 256789999999998 42211111 1123444443211 1 368
Q ss_pred HHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcceee
Q psy8199 409 FDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLC 488 (965)
Q Consensus 409 ~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt 488 (965)
++|++++++. ++++|++++ ++|++|.+.+ +++|.++|++||+++|+||+|+ +|... .......+|+++
T Consensus 149 ~~l~~~l~~~--~~~~v~~~~-~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~-~g~~~----~~~~~~~~di~~ 216 (393)
T 1vjo_A 149 EELRTALETH--RPAILALVH-AETSTGARQP----LEGVGELCREFGTLLLVDTVTS-LGGVP----IFLDAWGVDLAY 216 (393)
T ss_dssp HHHHHHHHHH--CCSEEEEES-EETTTTEECC----CTTHHHHHHHHTCEEEEECTTT-TTTSC----CCTTTTTCSEEE
T ss_pred HHHHHHHhhC--CceEEEEec-cCCCcceecc----HHHHHHHHHHcCCEEEEECCcc-ccCcC----CcccccCccEEE
Confidence 8999988742 355677787 7999999876 8899999999999999999998 76432 222344679886
Q ss_pred ec--cccCCCcccceeeeecHHHHHhhhccC-Ccccccc------------cCCC-CCCHHHHHHHHHHHHHHhc---cc
Q psy8199 489 LS--KGITGGYLPLSLVMTTDKIYNSIYYKN-NINIFLH------------SHSY-SGNPLACCAALATLEIFNK---DN 549 (965)
Q Consensus 489 ~s--K~l~gG~~pig~v~~~~~i~~~~~~~~-~~~~~~~------------~~t~-~~~~~~~aaa~a~L~~~~~---~~ 549 (965)
+| |+++++. ++|++++++++++.+.... ...++.+ ..++ +.|+++++++.++|+.+.+ ++
T Consensus 217 ~s~sK~l~~~~-~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~ 295 (393)
T 1vjo_A 217 SCSQKGLGCSP-GASPFTMSSRAIEKLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLAN 295 (393)
T ss_dssp CCSSSTTCSCS-SCEEEEECHHHHHHHHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHH
T ss_pred EcCcccccCCC-ceEEEEECHHHHHHHhccCCCCCceecCcHhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHH
Confidence 55 9998875 8999999999988774310 0011111 2234 6789999999999988644 35
Q ss_pred HHHHHHHHHHHHHHHHHcccCCCceeeeec--eeEEEEEEEeecCccchhhHHHHHHHHHHHc-CcEEeec-----CCEE
Q psy8199 550 ILQRISQDMKKITKALTSLITHPKIINFRQ--KGMIWAFDVIIEDPEQIETFSKKFFVAALKN-ELLLRPI-----GNTV 621 (965)
Q Consensus 550 ~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g--~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~-Gi~~~~~-----~~~l 621 (965)
..++++++.+++.+.|+++ ..+.+.. .+ .+.++.+.+. ++ .....+.+.|.++ ||.+.++ .+++
T Consensus 296 ~~~~~~~~~~~l~~~L~~~-g~~~~~~-~~~~~~~~~~~~~~--~~----~~~~~~~~~l~~~~gi~v~~g~~~~~~~~i 367 (393)
T 1vjo_A 296 CWQRHQKNVEYLWERLEDI-GLSLHVE-KEYRLPTLTTVCIP--DG----VDGKAVARRLLNEHNIEVGGGLGELAGKVW 367 (393)
T ss_dssp HHHHHHHHHHHHHHHHHHT-TCCBSSC-GGGBCSSEEEEECC--TT----CCHHHHHHHHHHHHCEECEECCGGGTTTEE
T ss_pred HHHHHHHHHHHHHHHHHHc-CCcccCC-ccccCCcEEEEEcC--CC----CCHHHHHHHHHhhCCEEEecCccccCCCEE
Confidence 6788888999999999875 2221111 11 2345555542 11 1134677888887 9999874 3799
Q ss_pred EEeC-CcccCHHHHHHHHHhhhcc
Q psy8199 622 YLMP-PYILNKNEIQHMTSAIFQT 644 (965)
Q Consensus 622 R~~p-~~~~t~~~i~~~~~~l~~~ 644 (965)
|+++ ++..++++++++++++.+.
T Consensus 368 Ris~~~~~~~~~~i~~~~~~l~~~ 391 (393)
T 1vjo_A 368 RVGLMGFNSRKESVDQLIPALEQV 391 (393)
T ss_dssp EEECCGGGCSHHHHHHHHHHHHHH
T ss_pred EEeCCccCChHHHHHHHHHHHHHH
Confidence 9995 5677888899999988654
|
| >2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.9e-22 Score=228.44 Aligned_cols=331 Identities=14% Similarity=0.070 Sum_probs=229.5
Q ss_pred cccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCC-CCeEEEcCChhHHHHHHHH
Q psy8199 254 KRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYK-LGHCFYGSDGASAVEVALK 332 (965)
Q Consensus 254 ~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~-~~~v~~~~sGseA~~~Al~ 332 (965)
+.|+|..+ -++.+|++.+|+.+++.. ++. ....+...++++++++.++.. .+++++++||++|++.+++
T Consensus 20 ~~~l~~~~------~~~~~~~v~~a~~~~~~~--~~~--~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~a~~~~~~ 89 (386)
T 2dr1_A 20 KYKLFTAG------PVACFPEVLEIMKVQMFS--HRS--KEYRKVHMDTVERLREFLEVEKGEVLLVPSSGTGIMEASIR 89 (386)
T ss_dssp CSEECCSS------SCCCCHHHHHHTTSCCCC--TTS--HHHHHHHHHHHHHHHHHHTCSSSEEEEESSCHHHHHHHHHH
T ss_pred cceeecCC------CcCCcHHHHHHHhccccc--ccC--HHHHHHHHHHHHHHHHHhCCCCCcEEEEeCChHHHHHHHHH
Confidence 46888744 245789999988776542 221 112567788999999998754 4679999999999999999
Q ss_pred HHHHHHHhcCCCCceEEEEEcCCccC--CccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHH
Q psy8199 333 MSFHYWYNKGFLNKKKFICLQNSYHG--ETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFD 410 (965)
Q Consensus 333 ~a~~~~~~~g~~~~~~vi~~~~~yHg--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 410 (965)
.+. .++++|++.+++||+ +...+... | ..+..++.+... . .|+++
T Consensus 90 ~l~--------~~gd~vl~~~~~~~~~~~~~~~~~~-g------------~~~~~v~~~~~~-~-----------~d~~~ 136 (386)
T 2dr1_A 90 NGV--------SKGGKVLVTIIGAFGKRYKEVVESN-G------------RKAVVLEYEPGK-A-----------VKPED 136 (386)
T ss_dssp HHS--------CTTCEEEEEESSHHHHHHHHHHHHT-T------------CEEEEEECCTTC-C-----------CCHHH
T ss_pred Hhh--------cCCCeEEEEcCCchhHHHHHHHHHh-C------------CceEEEecCCCC-C-----------CCHHH
Confidence 763 256899999999998 32111111 1 123444443211 1 36889
Q ss_pred HHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcceeeec
Q psy8199 411 LEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS 490 (965)
Q Consensus 411 le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~s 490 (965)
|++++++. +++++|++++ ++|++|.+.+ +++|.++|++||+++|+||+|+ +|.. .+... ...+|++++|
T Consensus 137 l~~~l~~~-~~~~~v~~~~-~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~~~~--~~~~~--~~~~di~~~s 205 (386)
T 2dr1_A 137 LDDALRKN-PDVEAVTITY-NETSTGVLNP----LPELAKVAKEHDKLVFVDAVSA-MGGA--DIKFD--KWGLDVVFSS 205 (386)
T ss_dssp HHHHHHHC-TTCCEEEEES-EETTTTEECC----HHHHHHHHHHTTCEEEEECTTT-BTTB--CCCTT--TTTCSEEEEE
T ss_pred HHHHHhcC-CCCcEEEEEe-ecCCcchhCC----HHHHHHHHHHcCCeEEEEcccc-ccCc--ccccc--ccCCcEEEEe
Confidence 99988642 3567777777 7999999876 8999999999999999999997 3322 12222 2346888765
Q ss_pred --cccCCCcccceeeeecHHHHHhhhccCCc----------ccc--cccCCCCCCHHHHHHHHHHHHHHhcc----cHHH
Q psy8199 491 --KGITGGYLPLSLVMTTDKIYNSIYYKNNI----------NIF--LHSHSYSGNPLACCAALATLEIFNKD----NILQ 552 (965)
Q Consensus 491 --K~l~gG~~pig~v~~~~~i~~~~~~~~~~----------~~~--~~~~t~~~~~~~~aaa~a~L~~~~~~----~~~~ 552 (965)
|.++++ .++|++++++++++.+...... ..+ ....+++.++++++++.++|+.+.+. ...+
T Consensus 206 ~sK~~~~~-~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~g~~~~~~~ 284 (386)
T 2dr1_A 206 SQKAFGVP-PGLAIGAFSERFLEIAEKMPERGWYFDIPLYVKYLKEKESTPSTPPMPQVFGINVALRIIEKMGGKEKWLE 284 (386)
T ss_dssp TTSTTCCC-SSCEEEEECHHHHHHHTTCTTCCSTTCHHHHHHHHHHHSSCSSCCCHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccccccCC-CceEEEEECHHHHHHHhcCCCCceEEeHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 999876 3689999999988766320000 001 12345678899999999999887543 5778
Q ss_pred HHHHHHHHHHHHHHcccCCCceee-eeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec-----CCEEEEeCC
Q psy8199 553 RISQDMKKITKALTSLITHPKIIN-FRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-----GNTVYLMPP 626 (965)
Q Consensus 553 ~~~~~~~~l~~~L~~l~~~~~i~~-v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-----~~~lR~~p~ 626 (965)
+++++.+++.+.|+++ ....+.. -...+.++.+.+. ++ .....+.+.|.++||.+.++ .+++|++++
T Consensus 285 ~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~--~~----~~~~~~~~~l~~~gi~v~~~~~~~~~~~iRi~~~ 357 (386)
T 2dr1_A 285 MYEKRAKMVREGVREI-GLDILAEPGHESPTITAVLTP--PG----IKGDEVYEAMRKRGFELAKGYGSVKEKTFRIGHM 357 (386)
T ss_dssp HHHHHHHHHHHHHHHT-TCCBSSCTTCBCSSEEEEECC--TT----CCHHHHHHHHHHTTEECEECCGGGTTTEEEEECC
T ss_pred HHHHHHHHHHHHHHHc-CCeeCcCccccCCceEEEEcC--CC----CCHHHHHHHHHHCCeEEecCccccCCCEEEEECC
Confidence 8888999999998875 2221111 0014677777664 11 11446788899999999874 379999998
Q ss_pred cccCHHHHHHHHHhhhcccc
Q psy8199 627 YILNKNEIQHMTSAIFQTFN 646 (965)
Q Consensus 627 ~~~t~~~i~~~~~~l~~~~~ 646 (965)
..+++++++++++++.+.+.
T Consensus 358 ~~~~~~~i~~~~~~l~~~~~ 377 (386)
T 2dr1_A 358 GYMKFEDIQEMLDNLREVIN 377 (386)
T ss_dssp SSCCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHH
Confidence 88999999999999876653
|
| >3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1e-22 Score=231.75 Aligned_cols=332 Identities=11% Similarity=0.028 Sum_probs=219.9
Q ss_pred CCcccccccccchhccCCCCCHHHHHHHHHHHhhcccc-ccCCC-CcHHHHHHHHHHHhh--cC-CCCCeEEEcCChhHH
Q psy8199 252 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHV-MLSNL-THKPVIKLSEKLSSL--TQ-YKLGHCFYGSDGASA 326 (965)
Q Consensus 252 dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~-~~~~~-~~~~~~~la~~l~~~--~~-~~~~~v~~~~sGseA 326 (965)
.|+.++|+.++.. .++ .+|.+.+|+.++++..... ...+| +.....++.+.++++ .+ ...++|++++|+++|
T Consensus 31 ~~~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~g~~~~~~v~~~~G~~~a 107 (400)
T 3asa_A 31 PQHTVINLSIGDT--TQP-LNASVAEAFASSIARLSSPTTCRGYGPDFGLPALRQKLSEDFYRGFVDAKEIFISDGAKVD 107 (400)
T ss_dssp TTSCCEECSSCCC--CCC-CCHHHHHHHHHHHHHHTSSSCCCCCCCTTCCHHHHHHHHHTTSTTSSCGGGEEEESCHHHH
T ss_pred CCCceEeccCCCC--CCC-CCHHHHHHHHHHHhcccccccccCCCCCCCCHHHHHHHHHHHHcCCCCHHHEEEccChHHH
Confidence 4788999988753 344 6899999999988764211 11223 233456777778777 34 456799999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCC-eeEecCCCCCCCCCCCChhHHHH
Q psy8199 327 VEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNK-TYIITTPDSRNINKGNSANEIAR 405 (965)
Q Consensus 327 ~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 405 (965)
++.+++++ .++++|++.+++||++.......+. . +..+|........
T Consensus 108 l~~~~~~~---------~~gd~Vl~~~p~y~~~~~~~~~~g~-------------~~~~~~~~~~~~~~~---------- 155 (400)
T 3asa_A 108 LFRLLSFF---------GPNQTVAIQDPSYPAYLDIARLTGA-------------KEIIALPCLQENAFF---------- 155 (400)
T ss_dssp HHHHHHHH---------CSSCEEEEEESCCHHHHHHHHHTTC-------------SEEEEEECCGGGTTC----------
T ss_pred HHHHHHHc---------CCCCEEEECCCCcHHHHHHHHHcCC-------------cceEecccchhcCcc----------
Confidence 99876543 3568899999999997533222211 1 3334432110000
Q ss_pred HHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccc-cccccccCCCc
Q psy8199 406 CAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK-FFACEHAEIWP 484 (965)
Q Consensus 406 ~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~-~~~~~~~~~~p 484 (965)
.| +++ . +++++|++++ ++|++|.+. +.+.+++|.++|++||+++|+||+|++|++.|. ......++..+
T Consensus 156 ~~---l~~----~-~~~~~v~l~~-p~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~ 225 (400)
T 3asa_A 156 PE---FPE----D-THIDILCLCS-PNNPTGTVL-NKDQLRAIVHYAIEHEILILFDAAYSTFISDPSLPKSIFEIPDAR 225 (400)
T ss_dssp CC---CCT----T-CCCSEEEEES-SCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTGGGCCCTTSCSSGGGSTTGG
T ss_pred cC---hhh----c-cCccEEEEeC-CCCCCCCcC-CHHHHHHHHHHHHHcCCEEEEEchhhhhhcCCCCCCchhhCCCCC
Confidence 01 111 0 2455666655 689999775 788999999999999999999999998876554 22222222123
Q ss_pred c----eeeeccccC-CCcccceeeeecHHH-------HHhhhccCCcccccccCCC-CCCHHHHHHHHHHHHHHhcccHH
Q psy8199 485 D----FLCLSKGIT-GGYLPLSLVMTTDKI-------YNSIYYKNNINIFLHSHSY-SGNPLACCAALATLEIFNKDNIL 551 (965)
Q Consensus 485 D----ivt~sK~l~-gG~~pig~v~~~~~i-------~~~~~~~~~~~~~~~~~t~-~~~~~~~aaa~a~L~~~~~~~~~ 551 (965)
| +.+|||.++ .| +|+|++++++++ ++.+.. ..+..++ +.|+++++++.++|+...-++..
T Consensus 226 ~~~i~~~s~sK~~g~~G-lriG~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~ 298 (400)
T 3asa_A 226 FCAIEINSFSKPLGFAG-IRLGWTVIPQELTYADGHFVIQDWE------RFLSTTFNGASIPAQEAGVAGLSILPQLEAI 298 (400)
T ss_dssp GTEEEEEECCGGGTTTT-CCCEEEECCTTCBCTTSCBHHHHHH------HHHHHHCCCCCHHHHHHHHHHHHHTTTCHHH
T ss_pred CceEEEecchhhcCCcc-hheeEEeeChhhccchhhhHHHHHH------HHhccCccCCChHHHHHHHHHhCcHHHHHHH
Confidence 4 457999997 56 899999999887 454432 1123344 57899999999999765345578
Q ss_pred HHHHHHHHHHHHHHHcccCCCceeeeec-eeEEEEEE-EeecCccchhhHHHHHHHHHH-HcCcEEeec-------CCEE
Q psy8199 552 QRISQDMKKITKALTSLITHPKIINFRQ-KGMIWAFD-VIIEDPEQIETFSKKFFVAAL-KNELLLRPI-------GNTV 621 (965)
Q Consensus 552 ~~~~~~~~~l~~~L~~l~~~~~i~~v~g-~G~~~~i~-~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~-------~~~l 621 (965)
++++++.+++.+.|+++ ++..+.+ .|.++++. +. ++.. ...+.+.|. ++||++.|+ .+++
T Consensus 299 ~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~l~~~~gv~v~~g~~f~~~~~~~i 368 (400)
T 3asa_A 299 HYYRENSDLLRKALLAT----GFEVFGGEHAPYLWVKPTQ--ANIS----DRDLFDFFLREYHIAITPGIGFGRSGSGFV 368 (400)
T ss_dssp HHHHHHHHHHHHHHHHT----TCEEEECSSSSEEEEECCC--TTCC----TTTHHHHHHHHHSEECEEGGGGCGGGTTCE
T ss_pred HHHHHHHHHHHHHHHHC----CCeeeCCCCceEEEEeccC--CCCC----HHHHHHHHHHhCCEEEeChhHhCCCCCCEE
Confidence 88889999999988775 3444444 36777777 53 2111 123556665 459999874 3689
Q ss_pred EEeCCcccCHHHHHHHHHhhhccccc
Q psy8199 622 YLMPPYILNKNEIQHMTSAIFQTFNE 647 (965)
Q Consensus 622 R~~p~~~~t~~~i~~~~~~l~~~~~~ 647 (965)
|++ +..++++++++++++.+.+.+
T Consensus 369 Ris--~~~~~e~i~~~l~~l~~~~~~ 392 (400)
T 3asa_A 369 RFS--SLGKREDILAACERLQMAPAL 392 (400)
T ss_dssp EEE--CCSCHHHHHHHHHHHHC----
T ss_pred EEE--eeCCHHHHHHHHHHHHHHHHh
Confidence 999 678999999999998876544
|
| >4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=7.2e-23 Score=234.53 Aligned_cols=348 Identities=10% Similarity=0.000 Sum_probs=227.9
Q ss_pred EEecCCcccccccccchhccCCCCC--HHHHHHHHHHHhhcc--ccccCCCCcHHHHHHHHHHHhhcC--CCCC--eEEE
Q psy8199 248 LITFSGKRYLDAISSWWVNLFGHSN--SYINKALKNQLNKLE--HVMLSNLTHKPVIKLSEKLSSLTQ--YKLG--HCFY 319 (965)
Q Consensus 248 ~~d~dG~~ylD~~~~~~~~~lGh~~--p~v~~av~~~~~~~~--~~~~~~~~~~~~~~la~~l~~~~~--~~~~--~v~~ 319 (965)
..+..+..+||+..|.+..+.|+.+ |.|.+|+.++++... .|....+..+.+..+++.+..... ...+ ++++
T Consensus 43 ~~~~~~~~~i~l~~G~y~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~ 122 (420)
T 4f4e_A 43 FNADTRPTKVNLGVGVYTNEDGKIPLLRAVRDAEKARVEAGLPRGYLPIDGIAAYDASVQKLLLGDDSPLIAAGRVVTAQ 122 (420)
T ss_dssp HHHCCCSSCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEE
T ss_pred HHhcCCCCcEEeeeeeeECCCCCccCcHHHHHHHHHHhccCCCCCCCCCCCcHHHHHHHHHHhcCCCccccccCceEEEE
Confidence 3334456899999998777788776 899999999887621 233233455666677776655431 0346 8999
Q ss_pred cCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCC-CCCCCCCCC
Q psy8199 320 GSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTP-DSRNINKGN 398 (965)
Q Consensus 320 ~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 398 (965)
|+||++|++.+++++... .++++|++.+++|+++.......+. .+..+|.. ...+.
T Consensus 123 t~G~t~al~~~~~~~~~~------~~gd~Vlv~~p~~~~~~~~~~~~g~-------------~~~~v~~~~~~~~~---- 179 (420)
T 4f4e_A 123 ALGGTGALKIGADFLRTL------NPKAKVAISDPSWENHRALFDMAGF-------------EVVAYPYYDAKTNG---- 179 (420)
T ss_dssp EEHHHHHHHHHHHHHHHH------CTTCCEEEEESCCHHHHHHHHHTTC-------------CEEEEECEETTTTE----
T ss_pred CCccHHHHHHHHHHHHHh------CCCCEEEEeCCCcHhHHHHHHHcCC-------------eEEEeeeeccccCc----
Confidence 999999999998755433 3678899999999988544433332 23444431 11111
Q ss_pred ChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccc--ccc
Q psy8199 399 SANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK--FFA 476 (965)
Q Consensus 399 ~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~--~~~ 476 (965)
.|+++|++.+++.+++++++++++ ++|++|.+. +.+.+++|.++|++||+++|+||+|.+|+..+. ...
T Consensus 180 -------~d~~~l~~~l~~~~~~~~~v~i~~-p~NPtG~~~-~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~ 250 (420)
T 4f4e_A 180 -------VNFDGMLAALNGYEPGTIVVLHAC-CHNPTGVDL-NDAQWAQVVEVVKARRLVPFLDIAYQGFGESIEADAAA 250 (420)
T ss_dssp -------ECHHHHHHHHTTCCTTCEEEEECS-SCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEEESCTTSSSCTTGGGHH
T ss_pred -------cCHHHHHHHHHhCCCCCEEEEeCC-CCCCCCCCC-CHHHHHHHHHHHHHCCcEEEEccccccccCCcchhhHH
Confidence 268899999976555677888877 799999765 778899999999999999999999999876541 222
Q ss_pred cccc-CCCccee---eeccccCC-Ccccceeeee---cHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHH---
Q psy8199 477 CEHA-EIWPDFL---CLSKGITG-GYLPLSLVMT---TDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIF--- 545 (965)
Q Consensus 477 ~~~~-~~~pDiv---t~sK~l~g-G~~pig~v~~---~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~--- 545 (965)
...+ +..++++ +|||.++. | +|+|++++ ++++++.+... ........+.+.++++++++.++|+..
T Consensus 251 ~~~~~~~~~~~i~~~S~SK~~~~~G-~RiG~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 327 (420)
T 4f4e_A 251 VRLFAAANLNVFVSSSFSKSFSLYG-ERVGALSIITDSKDEAARVLSQ--LKRVIRTNYSNPPTHGGAIVAAVLASPELR 327 (420)
T ss_dssp HHHHHHTTCCEEEEEECTTTTTCGG-GCEEEEEEECSSHHHHHHHHHH--HHHHHHTTTSSCCSHHHHHHHHHHHCHHHH
T ss_pred HHHHHhcCCCEEEEEeCCccCcCcC-CCcEEEEEEcCCHHHHHHHHHH--HHHHHhcccCCCCHHHHHHHHHHhcCHHHH
Confidence 2211 2333333 68999883 5 89999763 45655443220 001112344456778888877777531
Q ss_pred ---h--cccHHHHHHHHHHHHHHHHHcccCCCceeeeece-eEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecCC
Q psy8199 546 ---N--KDNILQRISQDMKKITKALTSLITHPKIINFRQK-GMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIGN 619 (965)
Q Consensus 546 ---~--~~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~-G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~ 619 (965)
. -+...++++++.+++.+.|+++...+++....+. |++.++.+. ...+.+.+.++||++.|.+
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~----------~~~~~~~l~~~gI~v~~~~- 396 (420)
T 4f4e_A 328 ASWVQELGEMRDRIRAMRNGLVERLKAAGIERDFSFINAQRGMFSYSGLT----------SAQVDRLREEFGIYAVSTG- 396 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCTHHHHSCSSEEECCCC----------HHHHHHHHHHHCEECCTTS-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceeECCCccEEEEeCCC----------HHHHHHHHHhCCEEecCCC-
Confidence 1 1345677777888888888765222234433344 444433321 2345567778999999864
Q ss_pred EEEEeCCcccCHHHHHHHHHhhhcc
Q psy8199 620 TVYLMPPYILNKNEIQHMTSAIFQT 644 (965)
Q Consensus 620 ~lR~~p~~~~t~~~i~~~~~~l~~~ 644 (965)
|++++ .+++++++++++++.++
T Consensus 397 --Ris~~-~~~~~~i~~~~~~l~~~ 418 (420)
T 4f4e_A 397 --RICVA-ALNTRNLDVVANAIAAV 418 (420)
T ss_dssp --EEEGG-GCCTTTHHHHHHHHHHH
T ss_pred --eEEEe-cCCHHHHHHHHHHHHHH
Confidence 88864 44778899999888654
|
| >1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=7.8e-22 Score=223.17 Aligned_cols=337 Identities=11% Similarity=0.040 Sum_probs=225.0
Q ss_pred CCcccccccccchhccCCCCCHHHHHHHHHHHhhc-cccccCCCCcHHHHHHHHHHHhhcCC--CCCeEEEcCChhHHHH
Q psy8199 252 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKL-EHVMLSNLTHKPVIKLSEKLSSLTQY--KLGHCFYGSDGASAVE 328 (965)
Q Consensus 252 dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~-~~~~~~~~~~~~~~~la~~l~~~~~~--~~~~v~~~~sGseA~~ 328 (965)
+|+.++|+..|.. .++ .+|.+.+++.++++.. ..|....+..+....+++.+....+. ..+++++++||++|++
T Consensus 29 ~~~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~g~~~al~ 105 (385)
T 1b5p_A 29 QGVDLVALTAGEP--DFD-TPEHVKEAARRALAQGKTKYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALF 105 (385)
T ss_dssp TTCCCEECCCSSC--SSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHH
T ss_pred cCCCEEEecCCCC--CCC-CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCChHHEEEcCChHHHHH
Confidence 4667889877743 344 3789999999888652 22332334566677777777765542 4578999999999999
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCC-CCCCCCCCChhHHHHHH
Q psy8199 329 VALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPD-SRNINKGNSANEIARCA 407 (965)
Q Consensus 329 ~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d 407 (965)
.+++.+. .++++|++.+++|+++.......+ ..+..+|... .... .|
T Consensus 106 ~~~~~l~--------~~gd~Vlv~~p~y~~~~~~~~~~g-------------~~~~~v~~~~~~~~~-----------~d 153 (385)
T 1b5p_A 106 NLFQAIL--------DPGDEVIVLSPYWVSYPEMVRFAG-------------GVVVEVETLPEEGFV-----------PD 153 (385)
T ss_dssp HHHHHHC--------CTTCEEEEEESCCTHHHHHHHHTT-------------CEEEEEECCGGGTTC-----------CC
T ss_pred HHHHHhc--------CCCCEEEEcCCCchhHHHHHHHcC-------------CEEEEeecCcccCCC-----------CC
Confidence 9998763 256889999999988743322211 1233444321 0111 26
Q ss_pred HHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCccee
Q psy8199 408 IFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL 487 (965)
Q Consensus 408 ~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDiv 487 (965)
+++|++++. +++.+|++.. ++|++|.+. +.+.+++|.++|++||+++|+||+|..+...|....+..+.-..+++
T Consensus 154 ~~~l~~~l~---~~~~~v~~~~-p~NPtG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~ 228 (385)
T 1b5p_A 154 PERVRRAIT---PRTKALVVNS-PNNPTGAVY-PKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAPEHTLT 228 (385)
T ss_dssp HHHHHTTCC---TTEEEEEEES-SCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCTTTEEE
T ss_pred HHHHHHhcC---CCCEEEEEeC-CCCCCCCCc-CHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCHHHcCCCCEEE
Confidence 788887774 2455555543 488999766 77889999999999999999999999875444222222221111222
Q ss_pred --eeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHH---Hhc--ccHHHHHHHHHHH
Q psy8199 488 --CLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEI---FNK--DNILQRISQDMKK 560 (965)
Q Consensus 488 --t~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~---~~~--~~~~~~~~~~~~~ 560 (965)
+|||.++..++++|++++++++++.+.. .....+++.+++++.++.++|+. ..+ +...++++++.++
T Consensus 229 ~~s~SK~~~~~G~RiG~~~~~~~~~~~l~~------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 302 (385)
T 1b5p_A 229 VNGAAKAFAMTGWRIGYACGPKEVIKAMAS------VSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDL 302 (385)
T ss_dssp EEESTTTTTCGGGCCEEEECCHHHHHHHHH------HHHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEechhhcCCcccceEEEEeCHHHHHHHHH------HHhhccCCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHH
Confidence 6899887322899999999999887764 22345677889999999888863 221 2355667777778
Q ss_pred HHHHHHcccCCCceeeeeceeE-EEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec-----CCEEEEeCCcccCHHHH
Q psy8199 561 ITKALTSLITHPKIINFRQKGM-IWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-----GNTVYLMPPYILNKNEI 634 (965)
Q Consensus 561 l~~~L~~l~~~~~i~~v~g~G~-~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-----~~~lR~~p~~~~t~~~i 634 (965)
+.+.|+++ ++....+.|. ++.+.+. ..+ .....+.+.|.++||.+.|+ .+++|++. ..+++++
T Consensus 303 l~~~L~~~----g~~~~~~~~~~~~~~~~~-~~~----~~~~~l~~~l~~~gv~v~~g~~f~~~~~iRis~--~~~~~~i 371 (385)
T 1b5p_A 303 LLEGLTAL----GLKAVRPSGAFYVLMDTS-PIA----PDEVRAAERLLEAGVAVVPGTDFAAFGHVRLSY--ATSEENL 371 (385)
T ss_dssp HHHHHHHH----TCCBCCCSBTTEEEEECT-TTC----SSHHHHHHHHHHTTEECEESGGGTCTTEEEEEC--CSCHHHH
T ss_pred HHHHHHHC----CCeecCCCeeEEEEEecC-CCC----CCHHHHHHHHHHCCeEEecccccCCCCeEEEEe--cCCHHHH
Confidence 88888765 3333344454 4444442 111 11346778888999999874 26899994 5889999
Q ss_pred HHHHHhhhccc
Q psy8199 635 QHMTSAIFQTF 645 (965)
Q Consensus 635 ~~~~~~l~~~~ 645 (965)
+++++++.+.+
T Consensus 372 ~~~l~~l~~~l 382 (385)
T 1b5p_A 372 RKALERFARVL 382 (385)
T ss_dssp HHHHHHGGGGC
T ss_pred HHHHHHHHHHH
Confidence 99999987654
|
| >1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.89 E-value=2e-22 Score=225.72 Aligned_cols=327 Identities=10% Similarity=0.006 Sum_probs=216.8
Q ss_pred cccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHH
Q psy8199 256 YLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSF 335 (965)
Q Consensus 256 ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~ 335 (965)
+++|.++ ..|+.+|++.+|+.+++... ....+..+...++++++++.++.+.+++++++||++|++.+++.++
T Consensus 15 ~i~l~~~----~~~~~~~~v~~a~~~~~~~~---~~~~g~~~~~~~~~~~l~~~~g~~~~~v~~~~g~t~a~~~~~~~~~ 87 (359)
T 1svv_A 15 PYSFVND----YSVGMHPKILDLMARDNMTQ---HAGYGQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIACSLAL 87 (359)
T ss_dssp CEECSCS----CSSCCCHHHHHHHHHHTTCC---CCSTTCSHHHHHHHHHHHHHHTCTTSEEEEESCHHHHHHHHHHHHC
T ss_pred eEEecCC----CcCCCCHHHHHHHHHHHhhc---cccccccHHHHHHHHHHHHHhCCCCccEEEeCCchHHHHHHHHHHh
Confidence 5555443 35678999999999988642 2244667889999999999988677899999999999999999884
Q ss_pred HHHHhcCCCCceEEEEEcCCccCCccc-cccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHH
Q psy8199 336 HYWYNKGFLNKKKFICLQNSYHGETLG-ALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEIL 414 (965)
Q Consensus 336 ~~~~~~g~~~~~~vi~~~~~yHg~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~ 414 (965)
. ++++|++.+++||++... .... ....+..+|.+ .+. .|+++|+++
T Consensus 88 ~--------~gd~vl~~~~~~~~~~~~~~~~~------------~g~~~~~v~~~--~~~-----------~d~~~l~~~ 134 (359)
T 1svv_A 88 R--------PWEAVIATQLGHISTHETGAIEA------------TGHKVVTAPCP--DGK-----------LRVADIESA 134 (359)
T ss_dssp C--------TTEEEEEETTSHHHHSSTTHHHH------------TTCCEEEECCT--TSC-----------CCHHHHHHH
T ss_pred C--------CCCEEEEcccchHHHHHHHHHhc------------CCCeeEEEeCC--CCe-----------ecHHHHHHH
Confidence 3 567999999999987432 1111 11234455542 111 267889988
Q ss_pred HHhC----CCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCC--CcccccccccccC--CCcce
Q psy8199 415 LKKN----HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGC--GRTGKFFACEHAE--IWPDF 486 (965)
Q Consensus 415 l~~~----~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~--gr~G~~~~~~~~~--~~pDi 486 (965)
+++. +.++++|++++ + +++|.+. +.+++++|.++|++||+++|+||+|.+| |+.+.. ....+ ..+|+
T Consensus 135 l~~~~~~~~~~~~~v~~~~-~-~ptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~--~~~~~~~~~~d~ 209 (359)
T 1svv_A 135 LHENRSEHMVIPKLVYISN-T-TEVGTQY-TKQELEDISASCKEHGLYLFLDGARLASALSSPVND--LTLADIARLTDM 209 (359)
T ss_dssp HHHSCSTTSCEEEEEEEES-S-CTTSCCC-CHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCC--CCHHHHHHHCSE
T ss_pred HHHHHhccCCCceEEEEEc-C-CCCceec-CHHHHHHHHHHHHHhCCEEEEEccchhhhhcCCCcc--hhhhhhhhcCCE
Confidence 8753 22478888888 6 6788766 5799999999999999999999999655 444321 11111 24788
Q ss_pred eeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Q psy8199 487 LCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALT 566 (965)
Q Consensus 487 vt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~ 566 (965)
++++..-.||..++|++++++++++.+... ...++.++..++...++..+.|+...-++..++++++++++.+.|
T Consensus 210 ~~~s~~K~g~~~~~g~l~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~L- 284 (359)
T 1svv_A 210 FYIGATKAGGMFGEALIILNDALKPNARHL----IKQRGALMAKGWLLGIQFEVLMKDNLFFELGAHSNKMAAILKAGL- 284 (359)
T ss_dssp EEEECTTTTCSSCEEEEECSGGGCTTHHHH----HHHTTCCCTTTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHH-
T ss_pred EEEecccCCCCCceEEEEEcccHHHHHHHH----HhcCCcccccchhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHh-
Confidence 776433234435668888888887766430 011334444333333333333321001246677888888888888
Q ss_pred cccCCCceeeeece-eEEEEEEEeecCccchhhHHHHHHHHHHHc-CcEEee----cCCEEEEeCCcccCHHHHHHHHHh
Q psy8199 567 SLITHPKIINFRQK-GMIWAFDVIIEDPEQIETFSKKFFVAALKN-ELLLRP----IGNTVYLMPPYILNKNEIQHMTSA 640 (965)
Q Consensus 567 ~l~~~~~i~~v~g~-G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~-Gi~~~~----~~~~lR~~p~~~~t~~~i~~~~~~ 640 (965)
+. +++..+.+. +.++.+.+. ..+.+.|.++ ||++.+ ..+++|+++++..+++++++++++
T Consensus 285 ~~---~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~~gi~v~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~ 350 (359)
T 1svv_A 285 EA---CGIRLAWPSASNQLFPILE-----------NTMIAELNNDFDMYTVEPLKDGTCIMRLCTSWATEEKECHRFVEV 350 (359)
T ss_dssp HH---TTCCBSSCCSSSEECBEEE-----------HHHHHHHTTTEECEEEEEETTTEEEEEEECCTTCCHHHHHHHHHH
T ss_pred cc---CCeEEccCCccceEEEEcC-----------HHHHHHHHHhcCEEEEecccCCCceEEEEccCcCCHHHHHHHHHH
Confidence 43 233333223 344444332 2577888888 998854 225899999999999999999999
Q ss_pred hhcccc
Q psy8199 641 IFQTFN 646 (965)
Q Consensus 641 l~~~~~ 646 (965)
+.+.+.
T Consensus 351 l~~~~~ 356 (359)
T 1svv_A 351 LKRLVA 356 (359)
T ss_dssp HHHC--
T ss_pred HHHHHh
Confidence 887653
|
| >3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.6e-22 Score=230.90 Aligned_cols=344 Identities=11% Similarity=0.038 Sum_probs=218.5
Q ss_pred EEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhcccc-ccCCC-CcHHHHHHHHHHHhh----cCCCCCeEEEcC
Q psy8199 248 LITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHV-MLSNL-THKPVIKLSEKLSSL----TQYKLGHCFYGS 321 (965)
Q Consensus 248 ~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~-~~~~~-~~~~~~~la~~l~~~----~~~~~~~v~~~~ 321 (965)
..+.+|+.+||+.+|.. .-..+|.|.+|+.++++..... ...+| +.....+|.+.++++ .+...++++|++
T Consensus 50 ~~~~~~~~~i~l~~~~~---~~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~~~~~~~~~i~~t~ 126 (432)
T 3ei9_A 50 LLKYPDAQVISLGIGDT---TEPIPEVITSAMAKKAHELSTIEGYSGYGAEQGAKPLRAAIAKTFYGGLGIGDDDVFVSD 126 (432)
T ss_dssp HHHCTTCCCEECSSCCC---CSCCCHHHHHHHHHHHHHTTSTTTCCCCCCTTCCHHHHHHHHHHHHTTTTCCGGGEEEES
T ss_pred hhcCCCCCeEEccCCCC---CCCCCHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHccCCCCcceEEECC
Confidence 34456889999988843 3457999999999998864211 11122 122234455555554 355678999999
Q ss_pred ChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChh
Q psy8199 322 DGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSAN 401 (965)
Q Consensus 322 sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (965)
|+++|+..+..++ .+++.|++.+++||++.......+....+.. .......+..+|........
T Consensus 127 G~~~al~~l~~l~---------~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~------ 190 (432)
T 3ei9_A 127 GAKCDISRLQVMF---------GSNVTIAVQDPSYPAYVDSSVIMGQTGQFNT-DVQKYGNIEYMRCTPENGFF------ 190 (432)
T ss_dssp CHHHHHHHHHHHH---------CTTCCEEEEESCCTHHHHHHHHHTCSCCEET-TTTEETTCEEEECCGGGTTS------
T ss_pred ChHHHHHHHHHHc---------CCCCEEEEeCCCCHHHHHHHHHcCCcccccc-cccccCceEEeccCcccCCc------
Confidence 9999998743332 3578899999999998655444332111110 00011134444443111000
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccccccccccc-
Q psy8199 402 EIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHA- 480 (965)
Q Consensus 402 ~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~- 480 (965)
.++++ . .++.+|+++. ++|++|.+. +.+.+++|.++|++||+++|+||+|++|...+.......+
T Consensus 191 -------~~l~~----~-~~~~~v~l~~-p~NPtG~~~-~~~~l~~l~~la~~~~~~li~Dea~~~~~~~~~~~~~~~~~ 256 (432)
T 3ei9_A 191 -------PDLST----V-GRTDIIFFCS-PNNPTGAAA-TREQLTQLVEFAKKNGSIIVYDSAYAMYMSDDNPRSIFEIP 256 (432)
T ss_dssp -------CCGGG----C-CCCSEEEEES-SCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSCCSSGGGST
T ss_pred -------CChhh----C-CCCCEEEEeC-CCCCCCCCC-CHHHHHHHHHHHHHcCcEEEEccchHhhccCCCCCChhhcC
Confidence 11221 1 2344444444 589999766 7778999999999999999999999987554433232222
Q ss_pred CC---CcceeeeccccC-CCcccceeeeecHHH--------HHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHH-h-
Q psy8199 481 EI---WPDFLCLSKGIT-GGYLPLSLVMTTDKI--------YNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIF-N- 546 (965)
Q Consensus 481 ~~---~pDivt~sK~l~-gG~~pig~v~~~~~i--------~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~-~- 546 (965)
+. ...+.+|||+++ .| +++|++++++++ .+.+.. .....+++.++++++++.++|+.. .
T Consensus 257 ~~~~~~i~~~S~SK~~g~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~a~~~~l~~~~~~ 329 (432)
T 3ei9_A 257 GAEEVAMETASFSNYAGFTG-VRLGWTVIPKKLLYSDGFPVAKDFNR------IICTCFNGASNISQAGALACLTPEGLE 329 (432)
T ss_dssp TGGGTEEEEEESHHHHCTTT-TCCEEEECCTTCBCTTSCBHHHHHHH------HHHHSCCCSCHHHHHHHHHHSSHHHHH
T ss_pred CCCCeEEEEecchhccCCcc-cceEEEEEChHHhhcchHHHHHHHHH------HhccccCCCCHHHHHHHHHHHhcccHH
Confidence 21 123447999987 55 899999999887 555543 223345568999999999888521 1
Q ss_pred -cccHHHHHHHHHHHHHHHHHcccCCCceeeeec-eeEEEEEEEeecCccchhhHHHHHHHHHHH-cCcEEeec------
Q psy8199 547 -KDNILQRISQDMKKITKALTSLITHPKIINFRQ-KGMIWAFDVIIEDPEQIETFSKKFFVAALK-NELLLRPI------ 617 (965)
Q Consensus 547 -~~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g-~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~-~Gi~~~~~------ 617 (965)
-+...++++++.+++.+.|+++ ++....+ .|.++.+.+. . .....+...+++ .||++.|+
T Consensus 330 ~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~--~-----~~~~~~~~~ll~~~gv~v~~g~~f~~~ 398 (432)
T 3ei9_A 330 AMHKVIGFYKENTNIIIDTFTSL----GYDVYGGKNAPYVWVHFP--N-----QSSWDVFAEILEKTHVVTTPGSGFGPG 398 (432)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT----TCCEEECSSSSEEEEECT--T-----SCHHHHHHHHHHHHCEECEEGGGGCGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHC----CceecCCCcceEEEEECC--C-----CCHHHHHHHHHHHCCEEEeCchHhCCC
Confidence 1346677788888888888765 3444443 5667666653 1 113345566654 59999873
Q ss_pred -CCEEEEeCCcccCHHHHHHHHHhhhcc
Q psy8199 618 -GNTVYLMPPYILNKNEIQHMTSAIFQT 644 (965)
Q Consensus 618 -~~~lR~~p~~~~t~~~i~~~~~~l~~~ 644 (965)
.+++|++ +..++++++++++++.+.
T Consensus 399 ~~~~iRis--~~~~~e~l~~~l~rl~~~ 424 (432)
T 3ei9_A 399 GEGFVRVS--AFGHRENILEACRRFKQL 424 (432)
T ss_dssp GTTEEEEE--CCSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEE--ecCCHHHHHHHHHHHHHH
Confidence 3799999 677999999999998753
|
| >3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.3e-22 Score=230.68 Aligned_cols=339 Identities=10% Similarity=0.060 Sum_probs=226.7
Q ss_pred ecCCcccccccccchhccCCCCCHHHHHHHHHHHh--hc-cccc-----cCCCCcHHHHHHHHHHHhhcCCCCCeEEEcC
Q psy8199 250 TFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLN--KL-EHVM-----LSNLTHKPVIKLSEKLSSLTQYKLGHCFYGS 321 (965)
Q Consensus 250 d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~--~~-~~~~-----~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~ 321 (965)
+.++..|||+.++ |+.+|++++|+.+++. .. .... ......+...++++++++.++.+.++++|++
T Consensus 19 ~~~~~iyld~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~ 92 (423)
T 3lvm_A 19 AMKLPIYLDYSAT------TPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPREIVFTS 92 (423)
T ss_dssp -CCSSEECBTTTC------CCCCHHHHHHHTTSSSTTSCCSCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEES
T ss_pred ccCCCEeecCCCc------CCCCHHHHHHHHHHHhhcccccCCCccccchhHHHHHHHHHHHHHHHHHcCCCCCeEEEeC
Confidence 3456788998654 4679999999999887 32 1100 0112245567899999999987677999999
Q ss_pred ChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChh
Q psy8199 322 DGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSAN 401 (965)
Q Consensus 322 sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (965)
||++|++.|++.+..++. .++++|++.+++|+++......+. .....+..+|..... .
T Consensus 93 ggt~a~~~a~~~l~~~~~----~~gd~Vl~~~~~~~~~~~~~~~~~----------~~g~~~~~v~~~~~~-~------- 150 (423)
T 3lvm_A 93 GATESDNLAIKGAANFYQ----KKGKHIITSKTEHKAVLDTCRQLE----------REGFEVTYLAPQRNG-I------- 150 (423)
T ss_dssp SHHHHHHHHHHHHHHHHT----TTCCEEEEETTSCHHHHHHHHHHH----------HTTCEEEEECCCTTS-C-------
T ss_pred ChHHHHHHHHHHHHHhhc----cCCCEEEECCccchHHHHHHHHHH----------HcCCEEEEeccCCCC-c-------
Confidence 999999999998765431 136889999999988743322210 001123444443211 1
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccC
Q psy8199 402 EIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAE 481 (965)
Q Consensus 402 ~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~ 481 (965)
.|+++|++++. +++++|++++ ++|++|.+.+ +++|.++|++||+++|+||++++ |.. ......
T Consensus 151 ----~d~~~l~~~i~---~~~~~v~~~~-~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~~-~~~----~~~~~~ 213 (423)
T 3lvm_A 151 ----IDLKELEAAMR---DDTILVSIMH-VNNEIGVVQD----IAAIGEMCRARGIIYHVDATQSV-GKL----PIDLSQ 213 (423)
T ss_dssp ----CCHHHHHHHCC---TTEEEEECCS-BCTTTCBBCC----HHHHHHHHHHHTCEEEEECTTTT-TTS----CCCTTT
T ss_pred ----cCHHHHHHhcC---CCcEEEEEeC-CCCCCccccC----HHHHHHHHHHcCCEEEEEhhhhc-CCC----CcChhh
Confidence 26788888875 4678999998 8999999887 99999999999999999999863 322 222334
Q ss_pred CCcceeeec--cccCCCcccceeeeecHHHHHhhhccCCc-ccccccCCCCCCHHHHHHHHHHHHHHhc--ccHHHHHHH
Q psy8199 482 IWPDFLCLS--KGITGGYLPLSLVMTTDKIYNSIYYKNNI-NIFLHSHSYSGNPLACCAALATLEIFNK--DNILQRISQ 556 (965)
Q Consensus 482 ~~pDivt~s--K~l~gG~~pig~v~~~~~i~~~~~~~~~~-~~~~~~~t~~~~~~~~aaa~a~L~~~~~--~~~~~~~~~ 556 (965)
..+|++++| |.+++ .++|++++++++.+.+...... .......+.+.++.+++++.++++.+.+ +++.+++++
T Consensus 214 ~~~di~~~s~sK~~g~--~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~ 291 (423)
T 3lvm_A 214 LKVDLMSFSGHKIYGP--KGIGALYVRRKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAKEEMATEMERLRG 291 (423)
T ss_dssp SCCSEEEEESTTTTSC--SSCEEEEECBTTBCCCCCSSCSSCTTTTTCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCEEEechHHhcCC--CCeEEEEEeccccCCCCccccCCcccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458988765 95433 4689999988776655431000 0000122345678888888888887654 456777778
Q ss_pred HHHHHHHHHHcccCCCceeeeece----eEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec---------------
Q psy8199 557 DMKKITKALTSLITHPKIINFRQK----GMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI--------------- 617 (965)
Q Consensus 557 ~~~~l~~~L~~l~~~~~i~~v~g~----G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~--------------- 617 (965)
+.+++.+.|+++ +++..+... +.++.+.+. . . ....+.+.|.+ +.+.++
T Consensus 292 ~~~~l~~~L~~~---~~~~~~~~~~~~~~~~~~~~~~--~-~----~~~~l~~~l~~--i~v~~g~~~~~~~~~~~~~~~ 359 (423)
T 3lvm_A 292 LRNRLWNGIKDI---EEVYLNGDLEHGAPNILNVSFN--Y-V----EGESLIMALKD--LAVSSGSACTSASLEPSYVLR 359 (423)
T ss_dssp HHHHHHHHHTTS---TTEEEESCSTTBCTTEEEEEET--T-S----CHHHHHHHTTT--EECBCCCC-----CCCCHHHH
T ss_pred HHHHHHHHHhcC---CCEEEeCCccccCCCeEEEEeC--C-C----CHHHHHHHHhh--heeccCccccCCCccccHHHH
Confidence 888888877654 454433322 345555553 1 1 13345566655 665542
Q ss_pred ---------CCEEEEeCCcccCHHHHHHHHHhhhccccc
Q psy8199 618 ---------GNTVYLMPPYILNKNEIQHMTSAIFQTFNE 647 (965)
Q Consensus 618 ---------~~~lR~~p~~~~t~~~i~~~~~~l~~~~~~ 647 (965)
.+.+|++++..+++++++++++++.+++..
T Consensus 360 ~~g~~~~~~~~~iRi~~~~~~t~e~i~~~~~~l~~~~~~ 398 (423)
T 3lvm_A 360 ALGLNDELAHSSIRFSLGRFTTEEEIDYTIELVRKSIGR 398 (423)
T ss_dssp HHTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HhCCCccccCceEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 378999999999999999999998876543
|
| >2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=7.7e-22 Score=226.26 Aligned_cols=304 Identities=12% Similarity=0.044 Sum_probs=209.4
Q ss_pred CCCCcHHHHHHHHHHHhhcCCCC---------CeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccc
Q psy8199 292 SNLTHKPVIKLSEKLSSLTQYKL---------GHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLG 362 (965)
Q Consensus 292 ~~~~~~~~~~la~~l~~~~~~~~---------~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~ 362 (965)
..+..+.+..+++.+.+..+... ++|++++|+++|+..+++++.. ++++|++.+++|+++...
T Consensus 77 ~~G~~~lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~--------~gd~Vlv~~p~y~~~~~~ 148 (425)
T 2r2n_A 77 SAGIPELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMIIN--------PGDNVLLDEPAYSGTLQS 148 (425)
T ss_dssp TTCCHHHHHHHHHHHHHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHHCC--------TTCEEEEESSCCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHhCC--------CCCEEEEeCCCcHHHHHH
Confidence 44556778888888877666443 5899999999999999998742 468899999999997544
Q ss_pred cccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCC---------CcEEEEEEcccccc
Q psy8199 363 ALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNH---------NKIAAIIIEPLVQC 433 (965)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~---------~~~aaii~ep~v~~ 433 (965)
....+. .+..+|.... + .|+++|+++++++. .++++|++.|.++|
T Consensus 149 ~~~~g~-------------~~~~v~~~~~-~------------~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~N 202 (425)
T 2r2n_A 149 LHPLGC-------------NIINVASDES-G------------IVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNN 202 (425)
T ss_dssp HGGGTC-------------EEEEECEETT-E------------ECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCT
T ss_pred HHHcCC-------------EEEEeCcCCC-C------------CCHHHHHHHHHhhhccccccccCCCceEEEECCCCcC
Confidence 322221 2233332110 0 26788999886321 34667777654688
Q ss_pred CCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccccc-cccccc---CCCcceeeeccccCCCcccceeeeecHHH
Q psy8199 434 AGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKF-FACEHA---EIWPDFLCLSKGITGGYLPLSLVMTTDKI 509 (965)
Q Consensus 434 ~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~-~~~~~~---~~~pDivt~sK~l~gG~~pig~v~~~~~i 509 (965)
++|.+. +.+.+++|.++|++||+++|+||+|+++.+.|.. .....+ +....+.+|||.++.| +++|++++++++
T Consensus 203 PtG~~~-~~~~l~~l~~~a~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~SK~~~~G-lRiG~~~~~~~l 280 (425)
T 2r2n_A 203 PTGNSL-TSERKKEIYELARKYDFLIIEDDPYYFLQFNKFRVPTFLSMDVDGRVIRADSFSKIISSG-LRIGFLTGPKPL 280 (425)
T ss_dssp TTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSSCCCCTGGGCTTSCEEEEEESTTTTCST-TCCEEEEEEHHH
T ss_pred CCCCcC-CHHHHHHHHHHHHHcCCEEEEECCcccccCCCCCCCCccccCCCCCEEEEccchhhccCc-cceEEEecCHHH
Confidence 889765 7888999999999999999999999987665542 122222 2223345899999866 899999999999
Q ss_pred HHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcc-------cHHHHHHHHHHHHHHHHHcccCCCcee-e-eece
Q psy8199 510 YNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKD-------NILQRISQDMKKITKALTSLITHPKII-N-FRQK 580 (965)
Q Consensus 510 ~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~-------~~~~~~~~~~~~l~~~L~~l~~~~~i~-~-v~g~ 580 (965)
++.+.. .....+++.++++++++.++|+.+.++ ...++++++.+++.+.|++. .|++. . .+..
T Consensus 281 ~~~l~~------~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--~~~~~~~~~p~~ 352 (425)
T 2r2n_A 281 IERVIL------HIQVSTLHPSTFNQLMISQLLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKW--LTGLAEWHVPAA 352 (425)
T ss_dssp HHHHHH------HHHTTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CSSSEEECCCSB
T ss_pred HHHHHH------HHHHhcCCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCCeEEeCCCc
Confidence 888765 234567888999999999999864322 23344455556666666542 23432 2 2455
Q ss_pred eEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec----------CCEEEEeCCcccCHHHHHHHHHhhhccc
Q psy8199 581 GMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI----------GNTVYLMPPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 581 G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~----------~~~lR~~p~~~~t~~~i~~~~~~l~~~~ 645 (965)
|+++++.+. .. ... ...+.+.|.++||.+.|+ .+++||+++. .++++++++++++.+.+
T Consensus 353 g~~~~~~~~-~~-~~~---~~~~~~~l~~~gv~v~pg~~f~~~~~~~~~~iRis~~~-~~~~~i~~~~~~l~~~l 421 (425)
T 2r2n_A 353 GMFLWIKVK-GI-NDV---KELIEEKAVKMGVLMLPGNAFYVDSSAPSPYLRASFSS-ASPEQMDVAFQVLAQLI 421 (425)
T ss_dssp SSEEEEEET-TC-SCC---HHHHHTHHHHTTEECEEGGGGSSSTTSCCCEEEEECSS-CCHHHHHHHHHHHHHHH
T ss_pred eEEEEEEeC-CC-CCH---HHHHHHHHHHCCcEEechhhhcCCCCCCCCEEEEEeCC-CCHHHHHHHHHHHHHHH
Confidence 777777774 11 111 222467788999999873 2689999763 69999999999987654
|
| >3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300} | Back alignment and structure |
|---|
Probab=99.89 E-value=6.2e-23 Score=235.46 Aligned_cols=303 Identities=13% Similarity=0.099 Sum_probs=206.0
Q ss_pred HHHHHHHHHHHhhcCCCCCeEEEcCChhHHHH--HHHHHHHHHHHhcCCCC--------ceEEEEEcCCccCCccccccc
Q psy8199 297 KPVIKLSEKLSSLTQYKLGHCFYGSDGASAVE--VALKMSFHYWYNKGFLN--------KKKFICLQNSYHGETLGALAV 366 (965)
Q Consensus 297 ~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~--~Al~~a~~~~~~~g~~~--------~~~vi~~~~~yHg~~~~~~~~ 366 (965)
....+|.+.++++++...+++++++|+++|+. .+++..... .++ +++|++.+++|+++.......
T Consensus 70 ~g~~~lr~~ia~~~~~~~~~i~~t~G~~~al~~~~~~~~l~~~-----~~g~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~ 144 (423)
T 3ez1_A 70 AGLPSARALFAGYLDVKAENVLVWNNSSLELQGLVLTFALLHG-----VRGSTGPWLSQTPKMIVTVPGYDRHFLLLQTL 144 (423)
T ss_dssp TCCHHHHHHHHHHTTSCGGGEEECSSCHHHHHHHHHHHHHHTC-----CTTCSSCGGGGCCEEEEEESCCHHHHHHHHHH
T ss_pred CChHHHHHHHHHHhCCChhhEEEeCCcHHHHHHHHHHHHHhcc-----CCCccccccCCCCEEEEcCCCcHHHHHHHHHc
Confidence 44568888888888777789999999999997 777765431 023 589999999999985443332
Q ss_pred cCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHH
Q psy8199 367 TNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLK 446 (965)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~ 446 (965)
+. .+..+|.... . .|+++|++++++ ..++++|+++|.++|++|.+. +.+.++
T Consensus 145 g~-------------~~~~v~~~~~--g-----------~d~~~l~~~l~~-~~~~~~v~~~~~~~NPtG~~~-~~~~l~ 196 (423)
T 3ez1_A 145 GF-------------ELLTVDMQSD--G-----------PDVDAVERLAGT-DPSVKGILFVPTYSNPGGETI-SLEKAR 196 (423)
T ss_dssp TC-------------EEEEEEEETT--E-----------ECHHHHHHHHHS-CTTEEEEEECSSSCTTTCCCC-CHHHHH
T ss_pred CC-------------EEEeccCCCC--C-----------CCHHHHHHHHhh-CCCceEEEECCCCCCCCCcCC-CHHHHH
Confidence 22 2233332211 0 267899998853 346788888764688888776 667799
Q ss_pred HHHHHH-HhcCCeEEEeccccCCCccc-c------cccc----cccCCCcceeeeccccCCCcccceeeeecHHHHHhhh
Q psy8199 447 LVREIC-NNYNIHLIADEIAVGCGRTG-K------FFAC----EHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIY 514 (965)
Q Consensus 447 ~l~~l~-~~~g~llI~DEv~tg~gr~G-~------~~~~----~~~~~~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~ 514 (965)
+|.++| ++||+++|+||+|+.+...+ . .+.. +..+....+.+|||.+.+| +++|++++++++++.+.
T Consensus 197 ~l~~~a~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~G-~r~G~~~~~~~~~~~~~ 275 (423)
T 3ez1_A 197 RLAGLQAAAPDFTIFADDAYRVHHLVEEDRAEPVNFVVLARDAGYPDRAFVFASTSKITFAG-AGLGFVASSEDNIRWLS 275 (423)
T ss_dssp HHHTCCCSSTTCEEEEECTTSSCBCCSSSCCCCCCHHHHHHHHTCTTSEEEEEESTTTSCSS-SSCEEEEECHHHHHHHH
T ss_pred HHHHHHHhccCCEEEEECCcchhhcCCCCCCCCcchhhhhhccCCCCeEEEEeCchhhccCC-cceEEEEeCHHHHHHHH
Confidence 999999 99999999999998432222 1 1111 1122223355899986556 89999999999998886
Q ss_pred ccCCcccccccCCCCCCHHHHHHHHHHHHH-Hh--c---ccHHHHHHHHHHHHHHHHHc-ccCCC-ceee-eeceeEEEE
Q psy8199 515 YKNNINIFLHSHSYSGNPLACCAALATLEI-FN--K---DNILQRISQDMKKITKALTS-LITHP-KIIN-FRQKGMIWA 585 (965)
Q Consensus 515 ~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~-~~--~---~~~~~~~~~~~~~l~~~L~~-l~~~~-~i~~-v~g~G~~~~ 585 (965)
. ..+..+++.++++++++.++|+. .. . ....+.++++.+.+.+.|.+ +...+ .+.. .+..|++++
T Consensus 276 ~------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~p~~g~~~~ 349 (423)
T 3ez1_A 276 K------YLGAQSIGPNKVEQARHVKFLTEYPGGLEGLMRDHAAIIAPKFRAVDEVLRAELGEGGEYATWTLPKGGYFIS 349 (423)
T ss_dssp H------HHHHSCSCCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSEEECCCSBSSCEE
T ss_pred H------HHhhhccCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCceEEeCCCccEEEE
Confidence 5 34556788999999999998875 11 0 11233344445555555543 23333 2432 234577777
Q ss_pred EEEeecCccchhhHHHHHHHHHHHcCcEEeec-----------CCEEEEeCCcccCHHHHHHHHHhhhccccc
Q psy8199 586 FDVIIEDPEQIETFSKKFFVAALKNELLLRPI-----------GNTVYLMPPYILNKNEIQHMTSAIFQTFNE 647 (965)
Q Consensus 586 i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-----------~~~lR~~p~~~~t~~~i~~~~~~l~~~~~~ 647 (965)
+.+. .. ....+.+.|.++||++.|. .+++||+++.. ++++++++++++.+++..
T Consensus 350 ~~~~--~~-----~~~~~~~~l~~~gv~v~~~g~~~~~~~~~~~~~iRis~~~~-~~~~i~~~~~~l~~~l~~ 414 (423)
T 3ez1_A 350 LDTA--EP-----VADRVVKLAEAAGVSLTPAGATYPAGQDPHNRNLRLAPTRP-PVEEVRTAMQVVAACIRL 414 (423)
T ss_dssp EEES--SS-----CHHHHHHHHHHTTEECCCTTTTSSTTCCSSSCEEEECCSSS-CHHHHHHHHHHHHHHHHH
T ss_pred EECC--CC-----cHHHHHHHHHHCCcEEecCcccccCCCCCCCCeEEEEcCCC-CHHHHHHHHHHHHHHHHH
Confidence 7775 21 1346778889999999882 26899998755 999999999998876543
|
| >2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=7.9e-23 Score=230.18 Aligned_cols=325 Identities=10% Similarity=0.070 Sum_probs=224.9
Q ss_pred cccccccccchhccCCCCCHHHHHHHHHHHhhcc---c---cccCCCCcHHHHHHHHH-HHhhcCCCCCeEEEcCChhHH
Q psy8199 254 KRYLDAISSWWVNLFGHSNSYINKALKNQLNKLE---H---VMLSNLTHKPVIKLSEK-LSSLTQYKLGHCFYGSDGASA 326 (965)
Q Consensus 254 ~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~---~---~~~~~~~~~~~~~la~~-l~~~~~~~~~~v~~~~sGseA 326 (965)
-.|||+.+ +.|+.+|++.+|+.+++.... + +....+..+...++.+. ++++++.. .++|++||++|
T Consensus 9 ~i~ld~~~-----~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~la~~~~~~--~v~~~~g~t~a 81 (371)
T 2e7j_A 9 FINIDPLQ-----TGGKLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGCD--VARVTNGAREA 81 (371)
T ss_dssp CEECCHHH-----HTCCCCHHHHHHHHHC--------------------CCHHHHHHTHHHHHTTSS--EEEEESSHHHH
T ss_pred cEEecccc-----cCCCCCHHHHHHHHHHHhhcccCCccccccchhhHHHHHHHHHHHHHHHHcCCC--EEEEeCChHHH
Confidence 35677633 346689999999999886542 1 11123456677899999 99999754 99999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEec--CCCCCCCCCCCChhHHH
Q psy8199 327 VEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIIT--TPDSRNINKGNSANEIA 404 (965)
Q Consensus 327 ~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 404 (965)
++.+++.+. .++++|++.+++||+........ | ..+..+| .... ..
T Consensus 82 ~~~~~~~~~--------~~gd~vl~~~~~~~~~~~~~~~~-g------------~~~~~v~~~~~~~-~~---------- 129 (371)
T 2e7j_A 82 KFAVMHSLA--------KKDAWVVMDENCHYSSYVAAERA-G------------LNIALVPKTDYPD-YA---------- 129 (371)
T ss_dssp HHHHHHHHC--------CTTCEEEEETTCCHHHHHHHHHT-T------------CEEEEECCCCTTT-CC----------
T ss_pred HHHHHHHHh--------CCCCEEEEccCcchHHHHHHHHc-C------------CeEEEeecccCCC-CC----------
Confidence 999999873 25689999999999885442221 1 1234454 2211 11
Q ss_pred HHHHHHHHHHHHhCC--CcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCC
Q psy8199 405 RCAIFDLEILLKKNH--NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEI 482 (965)
Q Consensus 405 ~~d~~~le~~l~~~~--~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~ 482 (965)
.|+++|+++++++. +++++|++++ ++|++|.+.+ +++|.++|++||+++|+||+|+.+ ..+ .....+
T Consensus 130 -~d~~~l~~~l~~~~~~~~~~~v~~~~-~~nptG~~~~----~~~i~~~~~~~~~~li~D~a~~~~-~~~--~~~~~~-- 198 (371)
T 2e7j_A 130 -ITPENFAQTIEETKKRGEVVLALITY-PDGNYGNLPD----VKKIAKVCSEYDVPLLVNGAYAIG-RMP--VSLKEI-- 198 (371)
T ss_dssp -CCHHHHHHHHHHHTTTSCEEEEEEES-SCTTTCCCCC----HHHHHHHHHTTTCCEEEECTTTBT-TBC--CCHHHH--
T ss_pred -cCHHHHHHHHHhhcccCCeEEEEEEC-CCCCCcccCC----HHHHHHHHHHcCCeEEEECccccC-CCC--CChhhc--
Confidence 26788888886431 4678899988 8999999887 799999999999999999999753 332 222223
Q ss_pred Cccee--eeccccCCCcccceeeeecHHHHHh-hhccCCccccccc---CCCCCCHHHHHHHHHHHHHHhcccHHHHH--
Q psy8199 483 WPDFL--CLSKGITGGYLPLSLVMTTDKIYNS-IYYKNNINIFLHS---HSYSGNPLACCAALATLEIFNKDNILQRI-- 554 (965)
Q Consensus 483 ~pDiv--t~sK~l~gG~~pig~v~~~~~i~~~-~~~~~~~~~~~~~---~t~~~~~~~~aaa~a~L~~~~~~~~~~~~-- 554 (965)
.+|++ +++|++++| .++|++++++++++. +... ...+.+. .+++.++.+++++.++++.+.+ .+.+++
T Consensus 199 ~~di~~~s~sK~~~~~-~~~G~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~ 274 (371)
T 2e7j_A 199 GADFIVGSGHKSMAAS-GPIGVMGMKEEWAEIVLRRS--EKYKNKEVELLGCTARGATIITLMASFPHVRE-RIKRWDEE 274 (371)
T ss_dssp TCSEEEEEHHHHSSCC-SSCEEEEECTTTTTTTTCBC--SSCTTSBGGGTTCCCCSHHHHHHHHHHHHHHH-HGGGHHHH
T ss_pred CCCEEEecCCcCCCCC-CCcEEEEEechhhhhhcccc--ccCcccccccccCCcCHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 36776 469999887 499999999988776 6431 0001110 0456788888888899988765 677888
Q ss_pred HHHHHHHHHHHHcccCCCceeeeec---eeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEee--------c--CCEE
Q psy8199 555 SQDMKKITKALTSLITHPKIINFRQ---KGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRP--------I--GNTV 621 (965)
Q Consensus 555 ~~~~~~l~~~L~~l~~~~~i~~v~g---~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~--------~--~~~l 621 (965)
+++.+++.+.|+++ ++..+.+ .|.++.+.+. ....+.+.|.++||.+.| + .+++
T Consensus 275 ~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~~~gi~~~~~~~~~~~~g~~~~~i 341 (371)
T 2e7j_A 275 VEKARRFAAEMEKL----GIKQLGDNPHNHDLMFFHAE---------VLYEISKKAKGGRFFLYRELKSRKIHGIKPGLT 341 (371)
T ss_dssp HHHHHHHHHHHHHT----TCEEESSSSCCSSEEEEECH---------HHHHHHHHSSSGGGHHHHHHHHTTEECSCTTCC
T ss_pred HHHHHHHHHHHHHc----CcEEecCCCccCceEEEECC---------CHHHHHHHHHHCCEEEEeccccccccCCCCCce
Confidence 88899999998775 2322222 4667777652 134677788889998865 1 3678
Q ss_pred E-EeCCcc-cCHHHHHHHHHhhhccc
Q psy8199 622 Y-LMPPYI-LNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 622 R-~~p~~~-~t~~~i~~~~~~l~~~~ 645 (965)
| ++++.. +++++++++++++.+.+
T Consensus 342 Rii~~~~~~~~~~~i~~~~~~l~~~~ 367 (371)
T 2e7j_A 342 RYFKLSTYGLSDEEVDYVLNAFKEII 367 (371)
T ss_dssp SEEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred EEEEeeccCCCHHHHHHHHHHHHHHH
Confidence 9 998877 89999999999887643
|
| >3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=3.7e-22 Score=226.95 Aligned_cols=345 Identities=12% Similarity=0.009 Sum_probs=222.3
Q ss_pred cCCcccccccccchhccCCCCC--HHHHHHHHH-HHhhcc--ccccCCCCcHHHHHHHHHHHhhcC--CCCC--eEEEcC
Q psy8199 251 FSGKRYLDAISSWWVNLFGHSN--SYINKALKN-QLNKLE--HVMLSNLTHKPVIKLSEKLSSLTQ--YKLG--HCFYGS 321 (965)
Q Consensus 251 ~dG~~ylD~~~~~~~~~lGh~~--p~v~~av~~-~~~~~~--~~~~~~~~~~~~~~la~~l~~~~~--~~~~--~v~~~~ 321 (965)
.....++|+..|.+..+.|+.+ |+|.+|+.+ +++... .+....+..+.+..+++.+....+ ...+ ++++++
T Consensus 23 ~~~~~~i~l~~g~y~d~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~~~i~~t~ 102 (397)
T 3fsl_A 23 DPRSDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTL 102 (397)
T ss_dssp CCCSCCEECSSCCCCCTTSCCCCCHHHHHHHHHHHHSCCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEES
T ss_pred CCCCCeEEEeeeEEECCCCCccCcHHHHHHHHhhccCccccccCCCCCchHHHHHHHHHHHhcCCcccccccceEEEEcC
Confidence 3445789999987666777776 999999999 887531 222223345556666666654321 0356 899999
Q ss_pred ChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCC-CCCCCCCCCCh
Q psy8199 322 DGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTP-DSRNINKGNSA 400 (965)
Q Consensus 322 sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 400 (965)
||++|++.++++.... .++++|++.+++|+++.......+. .+..+|.. ...+.
T Consensus 103 g~~~a~~~~~~~~~~~------~~gd~vl~~~p~~~~~~~~~~~~g~-------------~~~~~~~~~~~~~~------ 157 (397)
T 3fsl_A 103 GGSGALKVGADFLKRY------FPESGVWVSDPTWENHVAIFAGAGF-------------EVSTYPWYDEATNG------ 157 (397)
T ss_dssp HHHHHHHHHHHHHHHH------CTTCCEEEESSCCHHHHHHHHHTTC-------------CEEEECCEETTTTE------
T ss_pred CcHHHHHHHHHHHHhc------CCCCeEEEeCCCchhHHHHHHHcCC-------------ceEEEeeeeccCCc------
Confidence 9999999998765433 3668899999999987544333222 33444441 11111
Q ss_pred hHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccc--cccccc
Q psy8199 401 NEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTG--KFFACE 478 (965)
Q Consensus 401 ~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G--~~~~~~ 478 (965)
.|+++|+++++++.+++.++++.. ++|++|.+. +.+.+++|.++|++||+++|+||+|.+|...+ ......
T Consensus 158 -----~d~~~l~~~l~~~~~~~~~v~~~~-p~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~ 230 (397)
T 3fsl_A 158 -----VRFNDLLATLKTLQAGSIVLLHPC-CHNPTGADL-TNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIR 230 (397)
T ss_dssp -----ECHHHHHHHHTTCCTTCEEEECSS-SCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEEESCTTSSSCTTGGGHHHH
T ss_pred -----CcHHHHHHHHHhCCCCCEEEEeCC-CCCCCCcCC-CHHHHHHHHHHHHhCCEEEEEecCchhhccCcccccHHHH
Confidence 268899999976545667777766 699999765 67779999999999999999999999886542 222221
Q ss_pred cc-CCCcce---eeeccccC-CCcccceeeee---cHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHH-----
Q psy8199 479 HA-EIWPDF---LCLSKGIT-GGYLPLSLVMT---TDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIF----- 545 (965)
Q Consensus 479 ~~-~~~pDi---vt~sK~l~-gG~~pig~v~~---~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~----- 545 (965)
.+ +..+++ .+|||.++ .| +++|++++ ++++++.+... ........+.+.++++++++.++|+..
T Consensus 231 ~~~~~~~~~i~~~S~SK~~~~~G-~riG~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 307 (397)
T 3fsl_A 231 AIASAGLPALVSNSFSKIFSLYG-ERVGGLSVMCEDAEAAGRVLGQ--LKATVRRNYSSPPNFGAQVVAAVLNDEALKAS 307 (397)
T ss_dssp HHHHTTCCEEEEEECTTTTTCGG-GCCEEEEEECSSHHHHHHHHHH--HHHHHHTTTSSCCSHHHHHHHHHHTSHHHHHH
T ss_pred HHHhcCCCEEEEecccccccCcC-CCeeEEEEecCCHHHHHHHHHH--HHHHHHhccCCCCHHHHHHHHHHhcCHHHHHH
Confidence 11 222333 36899987 46 89999874 45555543220 001112334455778888777766521
Q ss_pred -h--cccHHHHHHHHHHHHHHHHHcccCCCceeeeece-eEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecCCEE
Q psy8199 546 -N--KDNILQRISQDMKKITKALTSLITHPKIINFRQK-GMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIGNTV 621 (965)
Q Consensus 546 -~--~~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~-G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~l 621 (965)
. -+...++++++.+++.+.|+++....++....+. |++..+.+. ...+.+.+.++||++.|++
T Consensus 308 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~l~~~gi~v~~g~--- 374 (397)
T 3fsl_A 308 WLKEVEEMRTRILAMRQELVKVLSTEMPERNFDYLLNQRGMFSYTGLS----------AAQVDRLREEFGVYLIASG--- 374 (397)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCCTHHHHCCSSEEECCCC----------HHHHHHHHHTTCEECCTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceeecCCceEEEecCCC----------HHHHHHHHHhCCEEECCCC---
Confidence 1 1345677788888888888776211133333344 444443332 2345667788999999875
Q ss_pred EEeCCcccCHHHHHHHHHhhhcc
Q psy8199 622 YLMPPYILNKNEIQHMTSAIFQT 644 (965)
Q Consensus 622 R~~p~~~~t~~~i~~~~~~l~~~ 644 (965)
||+++ .+++++++++++++.++
T Consensus 375 Ris~~-~~~~~~i~~~~~~l~~~ 396 (397)
T 3fsl_A 375 RMCVA-GLNTANVQRVAKAFAAV 396 (397)
T ss_dssp EEEGG-GCCTTTHHHHHHHHHHH
T ss_pred eEEEE-ecCHhhHHHHHHHHHhh
Confidence 88864 44778899999887653
|
| >1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.88 E-value=2e-21 Score=222.42 Aligned_cols=337 Identities=10% Similarity=0.063 Sum_probs=226.4
Q ss_pred CCcccccccccchhccCCCCCHHHHHHHHHHHhhc-ccccc----CCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHH
Q psy8199 252 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKL-EHVML----SNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASA 326 (965)
Q Consensus 252 dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~-~~~~~----~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA 326 (965)
+|..|||+.+ .|+.+|+|.+|+.+++... ..... .....+...++.++++++++.+.++++|++||++|
T Consensus 27 ~~~~yld~~~------~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a 100 (416)
T 1qz9_A 27 EGVIYLDGNS------LGARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIGARDGEVVVTDTTSIN 100 (416)
T ss_dssp TTCEECCTTT------SCCCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTTCCTTSEEECSCHHHH
T ss_pred CCeEeecCCC------cCCCcHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHcCCCcccEEEeCChhHH
Confidence 5788999854 3578999999999998753 11110 00123667899999999998666799999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHH
Q psy8199 327 VEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARC 406 (965)
Q Consensus 327 ~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (965)
++.+++.++.+.. .+. +++++|++++.+|+++..++...... . .....+..+|.
T Consensus 101 l~~al~~~~~~~~-~~~-~gd~vii~~~~~~~~~~~~~~~~~~~-----~-~~g~~~~~v~~------------------ 154 (416)
T 1qz9_A 101 LFKVLSAALRVQA-TRS-PERRVIVTETSNFPTDLYIAEGLADM-----L-QQGYTLRLVDS------------------ 154 (416)
T ss_dssp HHHHHHHHHHHHH-HHS-TTCCEEEEETTSCHHHHHHHHHHHHH-----H-CSSCEEEEESS------------------
T ss_pred HHHHHHhhccccc-ccC-CCCcEEEEcCCCCCchHHHHHHHHHH-----h-cCCceEEEeCc------------------
Confidence 9999998763210 001 33467777777888644332110000 0 00112333332
Q ss_pred HHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcce
Q psy8199 407 AIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDF 486 (965)
Q Consensus 407 d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDi 486 (965)
+++|++++. +++++|++++ ++|++|.+.+ +++|.++|++||+++|+||+|+ +|... +....+ .+|+
T Consensus 155 -~~~l~~~i~---~~~~~v~~~~-~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~g~~~--~~~~~~--~~d~ 220 (416)
T 1qz9_A 155 -PEELPQAID---QDTAVVMLTH-VNYKTGYMHD----MQALTALSHECGALAIWDLAHS-AGAVP--VDLHQA--GADY 220 (416)
T ss_dssp -GGGHHHHCS---TTEEEEEEES-BCTTTCBBCC----HHHHHHHHHHHTCEEEEECTTT-TTTSC--CCHHHH--TCSE
T ss_pred -HHHHHHHhC---CCceEEEEec-cccCcccccC----HHHHHHHHHHcCCEEEEEcccc-ccCcC--CChhhc--CCCE
Confidence 356677664 3678888988 8999999887 8999999999999999999996 55432 122222 4788
Q ss_pred eee--ccccCCCcccc-eeeeecHHHHHhhhccCCccc------------c-----ccc-CCCCCCHHHHHHHHHHHHHH
Q psy8199 487 LCL--SKGITGGYLPL-SLVMTTDKIYNSIYYKNNINI------------F-----LHS-HSYSGNPLACCAALATLEIF 545 (965)
Q Consensus 487 vt~--sK~l~gG~~pi-g~v~~~~~i~~~~~~~~~~~~------------~-----~~~-~t~~~~~~~~aaa~a~L~~~ 545 (965)
+++ +|.+++| .++ |++++++++++.+... .... + ... ...+.++.+++++.++|+.+
T Consensus 221 ~~~s~~K~l~~g-~~~~g~l~~~~~~~~~l~~~-~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~ 298 (416)
T 1qz9_A 221 AIGCTYKYLNGG-PGSQAFVWVSPQLCDLVPQP-LSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVF 298 (416)
T ss_dssp EEECSSSTTCCC-TTCCCEEEECTTTTTTSCCS-CCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHH
T ss_pred EEecCcccCCCC-CCCeEEEEECHHHHhccCCC-ccccCccccccCCCCccCCCcchHHhcCCCCCHHHHHHHHHHHHHH
Confidence 876 5998777 577 9999999887665431 0000 0 001 12346788888888999987
Q ss_pred hc---ccHHHHHHHHHHHHHHHHHcccCCCceeeee-----ceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec
Q psy8199 546 NK---DNILQRISQDMKKITKALTSLITHPKIINFR-----QKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI 617 (965)
Q Consensus 546 ~~---~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~-----g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~ 617 (965)
.+ +++.++++++++++.+.|+++...+++..+. ..+.++.+.+. + ...+.+.|.++||.+...
T Consensus 299 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~-------~~~l~~~l~~~gi~~~~~ 369 (416)
T 1qz9_A 299 AQTDMASLRRKSLALTDLFIELVEQRCAAHELTLVTPREHAKRGSHVSFEHP--E-------GYAVIQALIDRGVIGDYR 369 (416)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHHTTSCCEECSCSSGGGBCSEEEEECT--T-------HHHHHHHHHTTTEECEEE
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHHhhccCCCeEEeCCCCHHHcCCEEEEecC--C-------HHHHHHHHHhCCcEeccC
Confidence 64 3467888888999999887651100222222 23566666653 1 346778899999998763
Q ss_pred -CCEEEEeCC-cccCHHHHHHHHHhhhccc
Q psy8199 618 -GNTVYLMPP-YILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 618 -~~~lR~~p~-~~~t~~~i~~~~~~l~~~~ 645 (965)
.+.+|++++ +.+++++++++++++.+.+
T Consensus 370 ~~~~lRis~~~~~~t~~~i~~~~~~l~~~~ 399 (416)
T 1qz9_A 370 EPRIMRFGFTPLYTTFTEVWDAVQILGEIL 399 (416)
T ss_dssp TTTEEEEECCTTTCCHHHHHHHHHHHHHHH
T ss_pred CCCeEEEeCcccCCCHHHHHHHHHHHHHHH
Confidence 479999987 6899999999999887653
|
| >1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2 | Back alignment and structure |
|---|
Probab=99.88 E-value=1.2e-21 Score=227.71 Aligned_cols=352 Identities=14% Similarity=0.102 Sum_probs=212.9
Q ss_pred CCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHH
Q psy8199 252 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVAL 331 (965)
Q Consensus 252 dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al 331 (965)
.|+.|||+.+++++ |.|.+++.+++..... .....+...+++++++++++ .++++|++||++|++.|+
T Consensus 41 ~g~~ylD~~~~~~~-------~~v~~a~~~~~~~~~~---~y~~~~~~~~l~~~la~~~~--~~~v~~t~ggt~A~~~al 108 (467)
T 1ax4_A 41 SSAVYIDLLTDSGT-------NAMSDHQWAAMITGDE---AYAGSRNYYDLKDKAKELFN--YDYIIPAHQGRGAENILF 108 (467)
T ss_dssp GGGCSEECSCSSSC-------CCEEHHHHHHHHTCCC---CSSSCHHHHHHHHHHHHHHC--CCEEEEESSHHHHHHHHH
T ss_pred CCceeeecccCcCC-------HHHHHHHHHHHhhccc---ccccCccHHHHHHHHHHHcC--CCcEEEcCCcHHHHHHHH
Confidence 57899999887653 7788888877654321 12345677899999999985 589999999999999999
Q ss_pred HHHHHHHHhcCCCCceE---EEEEcCCcc-CCccccccccCCcCccchhcccCCCeeEecCC--CCCCCCCCCChhHHHH
Q psy8199 332 KMSFHYWYNKGFLNKKK---FICLQNSYH-GETLGALAVTNIQSFKEIYTSLLNKTYIITTP--DSRNINKGNSANEIAR 405 (965)
Q Consensus 332 ~~a~~~~~~~g~~~~~~---vi~~~~~yH-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 405 (965)
++++.++.. +++. ||+. .|| +.+..++...|..... .+... .++.. ..... .
T Consensus 109 ~~~~~~~~~----~Gd~~~~viv~--~~~~~~~~~~~~~~g~~~~~---~~~~~---~~~~~~~~~~~~----------~ 166 (467)
T 1ax4_A 109 PVLLKYKQK----EGKAKNPVFIS--NFHFDTTAAHVELNGCKAIN---IVTEK---AFDSETYDDWKG----------D 166 (467)
T ss_dssp HHHHHHHHH----TTCCSSCEEEE--SSCCHHHHHHHHHTTCEEEE---CBCGG---GGCTTSCCTTTT----------C
T ss_pred HHHHHhhcc----CCCccceEEEe--ccccchhhHHHhccCCceec---ccccc---cccccccCCccc----------c
Confidence 998764321 2233 5655 455 4434444433321100 00000 00000 00000 0
Q ss_pred HHHHHHHHHHHhCC-CcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccC----C------Cccccc
Q psy8199 406 CAIFDLEILLKKNH-NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVG----C------GRTGKF 474 (965)
Q Consensus 406 ~d~~~le~~l~~~~-~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg----~------gr~G~~ 474 (965)
.|+++|++++++.. +++++|+++| ++|++|..+++.+++++|+++|++||++||+||++.. | +..|..
T Consensus 167 ~d~~~le~~i~~~~~~~~~~vi~~~-~~np~gG~~~~~~~l~~i~~la~~~gi~li~De~~~~~~~~~~~~~~~~~~~~~ 245 (467)
T 1ax4_A 167 FDIKKLKENIAQHGADNIVAIVSTV-TCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNAT 245 (467)
T ss_dssp BCHHHHHHHHHHHCGGGEEEEEEES-SBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTCC
T ss_pred cCHHHHHHHHHhcCCCCeeEEEEec-cccCCCccCCChhHHHHHHHHHHHcCCEEEEEchhhhhcchhccccccccCCCc
Confidence 36889999997532 4689999999 8999866777899999999999999999999998652 0 111110
Q ss_pred ccccccC----CCcceeeeccccCCCcccceeee-ec-H-HHHHhhhccCCcccccccCCCCCCHHHHHHHH-HHHHHHh
Q psy8199 475 FACEHAE----IWPDFLCLSKGITGGYLPLSLVM-TT-D-KIYNSIYYKNNINIFLHSHSYSGNPLACCAAL-ATLEIFN 546 (965)
Q Consensus 475 ~~~~~~~----~~pDivt~sK~l~gG~~pig~v~-~~-~-~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~-a~L~~~~ 546 (965)
...++ ..+|++++|.+.+.| .|+|+++ ++ + ++++.+..- ...+....++++++..+.++. ++|+...
T Consensus 246 --~~~~~~~~~~~~d~~~~s~sK~~g-~~~Gg~~~~~d~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~a~~~~l~~~~ 320 (467)
T 1ax4_A 246 --IKEVIFDMYKYADALTMSAKKDPL-LNIGGLVAIRDNEEIFTLARQR--CVPMEGFVTYGGLAGRDMAAMVQGLEEGT 320 (467)
T ss_dssp --HHHHHHHHGGGCSEEEEETTSTTC-CSSCEEEEESSCHHHHHHHHHH--HHHHTCSTTTTTCCHHHHHHHHHHHHHTT
T ss_pred --hhhhhhhhccccceEEEeccccCC-CCcceEEEeCCHHHHHHHHHhh--ccccccccccCCccchHHHHHHHHHHHhh
Confidence 00000 125776554433344 4776555 55 5 787765431 000111235555555444433 3676554
Q ss_pred cccHHHHHHHHHHHHHHHHHcccCCCceeeeeceeEEEEEEEee--cCccchhhHHHHHHHHH-HHcCcEEeec------
Q psy8199 547 KDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVII--EDPEQIETFSKKFFVAA-LKNELLLRPI------ 617 (965)
Q Consensus 547 ~~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~G~~~~i~~~~--~~~~~~~~~~~~~~~~l-~~~Gi~~~~~------ 617 (965)
+++..++..++++++.+.|++. ..+.+. +..|.++++.... ..-.........+.+.| .++||.+.+.
T Consensus 321 ~~~~~~~~~~~~~~l~~~L~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~~g~~~~~ 397 (467)
T 1ax4_A 321 EEEYLHYRIGQVKYLGDRLREA-GIPIQY--PTGGHAVFVDCKKLVPQIPGDQFPAQAVINALYLESGVRAVEIGSFLLG 397 (467)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHT-TCCBCS--SCCSSEEEEESTTTCTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHC
T ss_pred hhhHHHHHHHHHHHHHHHHHhC-CCCccc--CCCceEEEEehhhhccccccCCCCHHHHHHHHHHhcCceeeecCccccc
Confidence 4445666667888888888762 222222 2234445554110 00000011144677888 8999998771
Q ss_pred -----C-------CEEEEeCC-cccCHHHHHHHHHhhhcccc
Q psy8199 618 -----G-------NTVYLMPP-YILNKNEIQHMTSAIFQTFN 646 (965)
Q Consensus 618 -----~-------~~lR~~p~-~~~t~~~i~~~~~~l~~~~~ 646 (965)
+ +++||++| ..+++++++++++++.+.+.
T Consensus 398 ~~~~~g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~ 439 (467)
T 1ax4_A 398 RDPATGEQKHADMEFMRLTIARRVYTNDHMDYIADALIGLKE 439 (467)
T ss_dssp BCTTTCSBCCCSCCEEEEECCTTSSCHHHHHHHHHHHHTTHH
T ss_pred cccccccccccccceEEEecccccCCHHHHHHHHHHHHHHHH
Confidence 2 68999999 55999999999999877654
|
| >3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.9e-21 Score=214.33 Aligned_cols=313 Identities=10% Similarity=0.059 Sum_probs=218.2
Q ss_pred CCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHH
Q psy8199 252 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVAL 331 (965)
Q Consensus 252 dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al 331 (965)
+.+.+||+.++. +++| .+|.+.+++.++++... .++.+...++.+.++++++...+++++++|+++++..++
T Consensus 14 ~~~~~i~l~~n~--~~~~-~~~~v~~a~~~~~~~~~-----~y~~~~~~~lr~~la~~~~~~~~~i~~t~G~~~~l~~~~ 85 (337)
T 3p1t_A 14 AAAQAVCLAFNE--NPEA-VEPRVQAAIAAAAARIN-----RYPFDAEPRVMRKLAEHFSCPEDNLMLVRGIDECFDRIS 85 (337)
T ss_dssp CCCCCEECSSCC--CCSC-CCHHHHHHHHHHGGGTT-----SCCTTHHHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHH
T ss_pred CCCCceEeeCCC--CCCC-CCHHHHHHHHHhhhhhc-----cCCCCchHHHHHHHHHHhCcCHHHEEEeCCHHHHHHHHH
Confidence 456789998873 5677 68999999998877642 345667789999999999877779999999999999998
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHH
Q psy8199 332 KMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDL 411 (965)
Q Consensus 332 ~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l 411 (965)
+.+ ++++|++.+++|+++.......+ ..+..+|...... .|+++|
T Consensus 86 ~~~----------~gd~vl~~~p~~~~~~~~~~~~g-------------~~~~~v~~~~~~~------------~d~~~l 130 (337)
T 3p1t_A 86 AEF----------SSMRFVTAWPGFDGYRARIAVSG-------------LRHFEIGLTDDLL------------LDPNDL 130 (337)
T ss_dssp HHS----------TTSEEEEESSSCSHHHHHHTTSC-------------CEEEEECBCTTSS------------BCHHHH
T ss_pred Hhc----------CCCeEEEeCCCcHHHHHHHHHcC-------------CEEEEecCCCCCC------------CCHHHH
Confidence 865 35789999999988743332221 1233444322111 256666
Q ss_pred HHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcceeeecc
Q psy8199 412 EILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSK 491 (965)
Q Consensus 412 e~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~sK 491 (965)
+++ . ++.+|++.. ++|++|.+.+ ++++.++|+++++ +|+||+|.+|+..+... ....+....+.++||
T Consensus 131 ~~~----~-~~~~v~i~~-p~nptG~~~~----~~~l~~l~~~~~~-~ivDea~~~~~~~~~~~-~~~~~~~i~~~S~sK 198 (337)
T 3p1t_A 131 AQV----S-RDDCVVLAN-PSNPTGQALS----AGELDQLRQRAGK-LLIDETYVDYSSFRARG-LAYGENELVFRSFSK 198 (337)
T ss_dssp TTC----C-TTEEEEEES-SCTTTCCCCC----HHHHHHHHHHCSE-EEEECTTGGGSSCSSSC-CCCBTTEEEEEESSS
T ss_pred Hhh----c-CCCEEEEeC-CCCCCCCCCC----HHHHHHHHHhCCc-EEEECCChhhccccccc-cccCCCEEEEeeCch
Confidence 653 2 234555555 5899999887 7788899999997 56699999876543221 111111112337899
Q ss_pred ccC-CCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHHHccc
Q psy8199 492 GIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN-KDNILQRISQDMKKITKALTSLI 569 (965)
Q Consensus 492 ~l~-gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~-~~~~~~~~~~~~~~l~~~L~~l~ 569 (965)
.++ .| +++|++++++++++.+.. ...+++.++++++++.++|+... -+...+++.++.+++.+.|+++
T Consensus 199 ~~g~~G-~r~G~~~~~~~~~~~l~~--------~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~- 268 (337)
T 3p1t_A 199 SYGLAG-LRLGALFGPSELIAAMKR--------KQWFCNVGTLDLHALEAALDNDRAREAHIAKTLAQRRRVADALRGL- 268 (337)
T ss_dssp TTCCTT-TCCEEEECCHHHHHHHHT--------TSCTTCSCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred hccCcc-hheEEEEeCHHHHHHHHh--------hcCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC-
Confidence 997 45 899999999999988865 23456788999998888886322 1234556666777777777665
Q ss_pred CCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecC-----CEEEEeCCcccCHHHHHHHHHhhhcc
Q psy8199 570 THPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG-----NTVYLMPPYILNKNEIQHMTSAIFQT 644 (965)
Q Consensus 570 ~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~-----~~lR~~p~~~~t~~~i~~~~~~l~~~ 644 (965)
++....+.|.++.+... + ...+.+.|.++||.+.++. +++|++.. ++++++++++++.+.
T Consensus 269 ---g~~~~~~~~~~~~~~~~--~-------~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~---~~~~~~~l~~al~~~ 333 (337)
T 3p1t_A 269 ---GYRVASSEANFVLVENA--A-------GERTLRFLRERGIQVKDAGQFGLHHHIRISIG---REEDNDRLLAALAEY 333 (337)
T ss_dssp ---TCCBCCCSSSEEEEECT--T-------THHHHHHHHHTTEECEEGGGGTCCSEEEEECC---CHHHHHHHHHHHHHH
T ss_pred ---cCEECCCCCeEEEEEcC--C-------HHHHHHHHHHCCeEEEECccCCCCCeEEEecC---CHHHHHHHHHHHHHH
Confidence 34445667888776653 2 1246677889999998853 79999943 788999998887654
|
| >1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=5.1e-22 Score=226.98 Aligned_cols=342 Identities=10% Similarity=0.007 Sum_probs=218.9
Q ss_pred CCcccccccccchhccCCC--CCHHHHHHHHH-HHhhc--cccccCCCCcHHHHHHHHHHHhhcC--CCCCeEEE--cCC
Q psy8199 252 SGKRYLDAISSWWVNLFGH--SNSYINKALKN-QLNKL--EHVMLSNLTHKPVIKLSEKLSSLTQ--YKLGHCFY--GSD 322 (965)
Q Consensus 252 dG~~ylD~~~~~~~~~lGh--~~p~v~~av~~-~~~~~--~~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~--~~s 322 (965)
+|+.++||.+|.+..+.|+ .+|.+.+|+.+ +++.. ..+....+..+.+..+++.+....+ ...++|++ ++|
T Consensus 27 ~~~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~t~g 106 (412)
T 1yaa_A 27 QRATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSYNHEYLGITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLS 106 (412)
T ss_dssp CCSSCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEH
T ss_pred CCCCeEEEeeeeeeCCCCCCCCcHHHHHHHHhhhcCcccccCCCCCCCcHHHHHHHHHHHhcCCCCCCCcceEEEEeccc
Confidence 5788999988865344443 46899999998 87532 1122222334445555555543221 13578999 999
Q ss_pred hhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecC-CCCCCCCCCCChh
Q psy8199 323 GASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITT-PDSRNINKGNSAN 401 (965)
Q Consensus 323 GseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 401 (965)
|++|++.+++++..+ .++++|++.+++|+++.......+. .+..+|. ......
T Consensus 107 ~~~a~~~~~~~~~~~------~~gd~Vl~~~p~~~~~~~~~~~~g~-------------~~~~v~~~~~~~~~------- 160 (412)
T 1yaa_A 107 GTGALHISAKFFSKF------FPDKLVYLSKPTWANHMAIFENQGL-------------KTATYPYWANETKS------- 160 (412)
T ss_dssp HHHHHHHHHHHHHHH------CTTCCEEEEESCCTTHHHHHHTTTC-------------CEEEEECEETTTTE-------
T ss_pred hHhHHHHHHHHHHHh------CCCCEEEEeCCCCccHHHHHHHcCc-------------eEEEEeeecCCCCc-------
Confidence 999999998766554 3567899999999998544333222 2333333 100111
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccc---ccccc-
Q psy8199 402 EIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTG---KFFAC- 477 (965)
Q Consensus 402 ~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G---~~~~~- 477 (965)
.|+++|++++++.+...+++++.. ++|++|.+. +.+.+++|.++|++||+++|+||+|.+|++.| .....
T Consensus 161 ----~d~~~l~~~l~~~~~~~~~~~~~~-p~nPtG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~ 234 (412)
T 1yaa_A 161 ----LDLNGFLNAIQKAPEGSIFVLHSC-AHNPTGLDP-TSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVR 234 (412)
T ss_dssp ----ECHHHHHHHHHHSCTTCEEEEECS-SCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHH
T ss_pred ----cCHHHHHHHHHhCCCCCEEEEeCC-CCCCCCCCC-CHHHHHHHHHHHHHCCCEEEEecccccccCCcccchhHHHH
Confidence 267889988876433345555344 589899765 78889999999999999999999999886654 22222
Q ss_pred cccCCCc---ce---eeeccccCC-Ccccceeee--e-----cHH----HHHhhhccCCcccccccCCCCCCHHHHHHHH
Q psy8199 478 EHAEIWP---DF---LCLSKGITG-GYLPLSLVM--T-----TDK----IYNSIYYKNNINIFLHSHSYSGNPLACCAAL 539 (965)
Q Consensus 478 ~~~~~~p---Di---vt~sK~l~g-G~~pig~v~--~-----~~~----i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~ 539 (965)
...+..+ ++ .+|||.++. | +++|+++ + +++ +++.+.. .....+.+.++++++++.
T Consensus 235 ~~~~~~~~~~~~i~~~s~sK~~~~~G-lriG~~~~~~~~~~~~~~~~~~l~~~l~~------~~~~~~~~~~~~~~~a~~ 307 (412)
T 1yaa_A 235 LGVEKLSTVSPVFVCQSFAKNAGMYG-ERVGCFHLALTKQAQNKTIKPAVTSQLAK------IIRSEVSNPPAYGAKIVA 307 (412)
T ss_dssp HHHHHTTTTCCEEEEEECTTTSCCGG-GCEEEEEEECCSCTTHHHHHHHHHHHHHH------HHHTTTSSCCHHHHHHHH
T ss_pred HHHhcCCCCcceEEEeccCCCCCCcC-CcceEEEEEecCCCCCHHHHHHHHHHHHH------HHhhccCCCChHHHHHHH
Confidence 1112233 23 378999987 6 8999998 7 666 6666543 122334455899999999
Q ss_pred HHHHHHh--------cccHHHHHHHHHHHHHHHHHcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcC
Q psy8199 540 ATLEIFN--------KDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNE 611 (965)
Q Consensus 540 a~L~~~~--------~~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~G 611 (965)
++|+... -+...++++++.+++.+.|+++....++....+.|.++.+.-. + ...+...+.++|
T Consensus 308 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~--~-------~~~~~~~l~~~g 378 (412)
T 1yaa_A 308 KLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVKLGTPGNWDHIVNQCGMFSFTGL--T-------PQMVKRLEETHA 378 (412)
T ss_dssp HHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCTHHHHCCSSEEECCC--C-------HHHHHHHHHHHC
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCeeeeccCceEEEeeCC--C-------HHHHHHHHHhCC
Confidence 9887441 2345667777888888888765210023333444544433211 1 123545556889
Q ss_pred cEEeecCCEEEEeCCcccCHHHHHHHHHhhhccc
Q psy8199 612 LLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 612 i~~~~~~~~lR~~p~~~~t~~~i~~~~~~l~~~~ 645 (965)
|++.+ .+||+++. .++++++++++++.+.+
T Consensus 379 i~v~~---~~Ris~~~-~~~~~i~~~~~~l~~~~ 408 (412)
T 1yaa_A 379 VYLVA---SGRASIAG-LNQGNVEYVAKAIDEVV 408 (412)
T ss_dssp EECCT---TSEEEGGG-CCTTTHHHHHHHHHHHH
T ss_pred EEecc---CcEEEEcc-CCHhHHHHHHHHHHHHH
Confidence 99987 47999763 58899999998876543
|
| >3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.88 E-value=6.1e-21 Score=217.59 Aligned_cols=335 Identities=11% Similarity=0.064 Sum_probs=222.4
Q ss_pred CCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCC-----CcHHHHHHHHHHHhhcCCCCCeEEEcCChhHH
Q psy8199 252 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNL-----THKPVIKLSEKLSSLTQYKLGHCFYGSDGASA 326 (965)
Q Consensus 252 dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~-----~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA 326 (965)
++..|||+.++. +.+|++.+|+.++++.........+ ..+...++.+.++++++.+.++++|++||++|
T Consensus 25 ~~~~~ld~~~~~------~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a 98 (406)
T 3cai_A 25 DGWVHFDAPAGM------LIPDSVATTVSTAFRRSGASTVGAHPSARRSAAVLDAAREAVADLVNADPGGVVLGADRAVL 98 (406)
T ss_dssp SSCEECBGGGCC------CCCHHHHHHHHHHHHHCCSSSCSSSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESCHHHH
T ss_pred CCeEEEeCCCcC------CCCHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCChHHH
Confidence 457899987652 4789999999999876421111112 24567889999999997666799999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHH
Q psy8199 327 VEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARC 406 (965)
Q Consensus 327 ~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (965)
++.+++...... .++++|++.+++|++.......+.. .....+.++|.....+. .
T Consensus 99 l~~~~~~l~~~~-----~~gd~vi~~~~~~~~~~~~~~~~~~---------~~g~~v~~v~~~~~~~~-----------~ 153 (406)
T 3cai_A 99 LSLLAEASSSRA-----GLGYEVIVSRLDDEANIAPWLRAAH---------RYGAKVKWAEVDIETGE-----------L 153 (406)
T ss_dssp HHHHHHHTGGGG-----BTTCEEEEETTSCGGGTHHHHHHHH---------HHBCEEEEECCCTTTCC-----------C
T ss_pred HHHHHHHHhhcc-----CCCCEEEEcCCccHHHHHHHHHHHH---------hcCCeEEEEecCcccCC-----------c
Confidence 999887542100 3567899999999876322211100 00113444544211111 2
Q ss_pred HHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcce
Q psy8199 407 AIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDF 486 (965)
Q Consensus 407 d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDi 486 (965)
|+++|++++. +++++|++++ ++|++|.+.+ +++|.++|++||+++|+||+|+ +|.. .+....++ +|+
T Consensus 154 d~~~l~~~l~---~~~~~v~~~~-~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~g~~--~~~~~~~~--~d~ 220 (406)
T 3cai_A 154 PTWQWESLIS---KSTRLVAVNS-ASGTLGGVTD----LRAMTKLVHDVGALVVVDHSAA-APYR--LLDIRETD--ADV 220 (406)
T ss_dssp CGGGHHHHCC---TTEEEEEEES-BCTTTCBBCC----CHHHHHHHHHTTCEEEEECTTT-TTTC--CCCHHHHC--CSE
T ss_pred CHHHHHHHhC---CCceEEEEeC-CcCCccccCC----HHHHHHHHHHcCCEEEEEcccc-cCCC--CCCchhcC--CCE
Confidence 5678888774 4678888888 8999999887 8899999999999999999996 4322 12222333 687
Q ss_pred ee--eccccCCCcccce-eeeecHHHHHhhhccCCc-cc-c-cccCCCCCCHHHHHHHHHHHHHHhc-------------
Q psy8199 487 LC--LSKGITGGYLPLS-LVMTTDKIYNSIYYKNNI-NI-F-LHSHSYSGNPLACCAALATLEIFNK------------- 547 (965)
Q Consensus 487 vt--~sK~l~gG~~pig-~v~~~~~i~~~~~~~~~~-~~-~-~~~~t~~~~~~~~aaa~a~L~~~~~------------- 547 (965)
++ ++|.++ + ++| ++++++++++.+...... .. . ......+.|+.+++++.++|+.+.+
T Consensus 221 ~~~s~~K~~g-~--~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~ 297 (406)
T 3cai_A 221 VTVNAHAWGG-P--PIGAMVFRDPSVMNSFGSVSTNPYATGPARLEIGVHQFGLLAGVVASIEYLAALDESARGSRRERL 297 (406)
T ss_dssp EEEEGGGGTS-C--SCEEEEESCHHHHHTSCCCCSCTTCCGGGGGCCSCCCHHHHHHHHHHHHHHHTSSTTCCSSHHHHH
T ss_pred EEeehhhhcC-C--CcCeEEEEehHHHhhcCCcccCCCCCccccccCCCccHHHHHHHHHHHHHHHHhccccccchhhhh
Confidence 75 579654 3 388 999999988766531000 00 0 0001234678888888888887754
Q ss_pred ----ccHHHHHHHHHHHHHHHHHcccCCCceeeeec---eeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecC--
Q psy8199 548 ----DNILQRISQDMKKITKALTSLITHPKIINFRQ---KGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG-- 618 (965)
Q Consensus 548 ----~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g---~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~-- 618 (965)
+.+.++++++.+++.+.|+++ +++....+ .+.++.+.+. . .....+.+.|.++||.+.++.
T Consensus 298 ~~~~~~~~~~~~~~~~~l~~~L~~~---~~~~~~~~~~~~~~~~~~~~~--~-----~~~~~~~~~L~~~gi~v~~g~~~ 367 (406)
T 3cai_A 298 AVSMQSADAYLNRVFDYLMVSLRSL---PLVMLIGRPEAQIPVVSFAVH--K-----VPADRVVQRLADNGILAIANTGS 367 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTC---TTEEECCCCSSBCSEEEEEET--T-----BCHHHHHHHHHHTTEECEECCSC
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhcC---CCeEEcCCccccCCEEEEEEC--C-----cCHHHHHHHHHHCCcEEecCChH
Confidence 235566677777777777654 44432222 3456666653 1 113467788889999998642
Q ss_pred ------------CEEEEeCCcccCHHHHHHHHHhhhc
Q psy8199 619 ------------NTVYLMPPYILNKNEIQHMTSAIFQ 643 (965)
Q Consensus 619 ------------~~lR~~p~~~~t~~~i~~~~~~l~~ 643 (965)
+++|++++...++++++++++++.+
T Consensus 368 ~~~~~~g~~~~~~~iRis~~~~~t~e~i~~~~~~l~~ 404 (406)
T 3cai_A 368 RVLDVLGVNDVGGAVTVGLAHYSTMAEVDQLVRALAS 404 (406)
T ss_dssp HHHHHHTTTTTTCCEEEECCTTCCHHHHHHHHHHHHT
T ss_pred HHHHHcCCCCCCCeEEEEeecCCCHHHHHHHHHHHHH
Confidence 6899999998999999999998865
|
| >3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.1e-22 Score=231.22 Aligned_cols=343 Identities=11% Similarity=0.028 Sum_probs=220.0
Q ss_pred ccccccccchhccCCCCCHHHHHHH--HHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHH--HHH
Q psy8199 255 RYLDAISSWWVNLFGHSNSYINKAL--KNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAV--EVA 330 (965)
Q Consensus 255 ~ylD~~~~~~~~~lGh~~p~v~~av--~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~--~~A 330 (965)
..+||..|.....+...++.+.+++ .+++.................+|.+.++++++...++|++|+|+++|+ +.+
T Consensus 34 ~~i~~~~G~p~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~i~~t~G~~~al~~~~~ 113 (427)
T 3ppl_A 34 LKLDLTRGKPSSEQLDFADELLALPGKGDFKAADGTDVRNYGGLDGIVDIRQIWADLLGVPVEQVLAGDASSLNIMFDVI 113 (427)
T ss_dssp CCEECCCCSCCHHHHHTTGGGGGCSCTTCCBCTTSCBTTSSCCSSCCHHHHHHHHHHHTSCGGGEEECSSCHHHHHHHHH
T ss_pred ceEecCCCCCChHHCCCcHHHHHHhhhHHHhhccchhhcCCCCCCCcHHHHHHHHHHhCCCcceEEEeCCcHHHHHHHHH
Confidence 3577776644322222222344444 443333211111112223456777777777776778999999999999 578
Q ss_pred HHHHHHHHHhcCCC---------CceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChh
Q psy8199 331 LKMSFHYWYNKGFL---------NKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSAN 401 (965)
Q Consensus 331 l~~a~~~~~~~g~~---------~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (965)
++++... .+ ++++|++.+++|+++.......+. .++.+|.... +
T Consensus 114 ~~~l~~~-----~~g~~~~~~~~~gd~V~v~~p~y~~~~~~~~~~g~-------------~~~~v~~~~~-g-------- 166 (427)
T 3ppl_A 114 SWSYIFG-----NNDSVQPWSKEETVKWICPVPGYDRHFSITERFGF-------------EMISVPMNED-G-------- 166 (427)
T ss_dssp HHHHHHC-----CTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHTTC-------------EEEEEEEETT-E--------
T ss_pred HHHHhcc-----CCcccccccCCCCCEEEEcCCCcHHHHHHHHHcCC-------------EEEEeCCCCC-C--------
Confidence 7766431 01 168999999999987543333222 2333333211 0
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHH-HhcCCeEEEeccccCCCccccc----cc
Q psy8199 402 EIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREIC-NNYNIHLIADEIAVGCGRTGKF----FA 476 (965)
Q Consensus 402 ~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~-~~~g~llI~DEv~tg~gr~G~~----~~ 476 (965)
.|+++|+++++ ..++.+|+++|.++|++|.+. +.+.+++|.++| ++||+++|+||+|+++...+.. ..
T Consensus 167 ----~d~~~l~~~l~--~~~~~~v~~~p~~~NPtG~~~-~~~~~~~l~~~a~~~~~~~ii~De~y~~~~~~~~~~~~~~~ 239 (427)
T 3ppl_A 167 ----PDMDAVEELVK--NPQVKGMWVVPVFSNPTGFTV-TEDVAKRLSAMETAAPDFRVVWDNAYAVHTLTDEFPEVIDI 239 (427)
T ss_dssp ----ECHHHHHHHTT--STTEEEEEECCSSCTTTCCCC-CHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCH
T ss_pred ----CCHHHHHHHHh--cCCCeEEEECCCCCCCCCccC-CHHHHHHHHHHHhhcCCCEEEEECCCcccccCCCCCCccch
Confidence 26788888884 346788888865788888876 666699999999 9999999999999984333221 11
Q ss_pred cc------ccCCCcceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHH---hc
Q psy8199 477 CE------HAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIF---NK 547 (965)
Q Consensus 477 ~~------~~~~~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~---~~ 547 (965)
.. ..+....+.+|||.++.| +++|++++++++++.+.. ..+..+++.+++++.++.++|+.. .+
T Consensus 240 ~~~~~~~~~~~~~i~~~S~SK~~~~G-~r~G~~~~~~~l~~~~~~------~~~~~~~~~~~~~q~~~~~~l~~~~~~~~ 312 (427)
T 3ppl_A 240 VGLGEAAGNPNRFWAFTSTSKITLAG-AGVSFFLTSAENRKWYTG------HAGIRGIGPNKVNQLAHARYFGDAEGVRA 312 (427)
T ss_dssp HHHHHHTTCTTSEEEEEESTTTSCTT-SSCEEEECCHHHHHHHHH------HHHHHCSCCCHHHHHHHHHHHCSHHHHHH
T ss_pred hhhhhccCCCCcEEEEechhhccCcC-ccEEEEEcCHHHHHHHHH------HhhcccCCCCHHHHHHHHHHHhChhhHHH
Confidence 11 223344566899986556 899999999999888865 234567788999999988887531 11
Q ss_pred --ccHHHHHHHHHHHHHHHHHc-ccCCCceee-eeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEee-------
Q psy8199 548 --DNILQRISQDMKKITKALTS-LITHPKIIN-FRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRP------- 616 (965)
Q Consensus 548 --~~~~~~~~~~~~~l~~~L~~-l~~~~~i~~-v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~------- 616 (965)
....+.++++.+.+.+.|.+ +...+++.. .+..|+++++.+. +. ....+.+.|.++||.+.|
T Consensus 313 ~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~~g~~~~~~~~--~~-----~~~~~~~~l~~~gv~v~~~g~~~~~ 385 (427)
T 3ppl_A 313 VMRKHAASLAPKFNKVLEILDSRLAEYGVAQWTVPAGGYFISLDVV--PG-----TASRVAELAKEAGIALTGAGSSYPL 385 (427)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHGGGTCCEECCCSBSSCEEEECS--TT-----CHHHHHHHHHHTTEECCCTTTTSGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEeCCCccEEEEEECC--cc-----hHHHHHHHHHHCCCEEecCcCcCCC
Confidence 12344455555566666644 222223332 2334677777764 21 144677888999999987
Q ss_pred ----cCCEEEEeCCcccCHHHHHHHHHhhhcccc
Q psy8199 617 ----IGNTVYLMPPYILNKNEIQHMTSAIFQTFN 646 (965)
Q Consensus 617 ----~~~~lR~~p~~~~t~~~i~~~~~~l~~~~~ 646 (965)
..+++||+++.. ++++++++++++.+++.
T Consensus 386 ~~~~~~~~~Ris~~~~-~~~~i~~~~~~l~~~l~ 418 (427)
T 3ppl_A 386 RQDPENKNLRLAPSLP-PVEELEVAMDGVATCVL 418 (427)
T ss_dssp GCCTTSCEEEECCSSS-CHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCeEEEECCCC-CHHHHHHHHHHHHHHHH
Confidence 236899998655 89999999999877654
|
| >1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.3e-21 Score=219.17 Aligned_cols=328 Identities=12% Similarity=0.051 Sum_probs=221.9
Q ss_pred ccccccccchhccCCCCCHHHHHHHHHHHhhcc-cccc----CCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHH
Q psy8199 255 RYLDAISSWWVNLFGHSNSYINKALKNQLNKLE-HVML----SNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEV 329 (965)
Q Consensus 255 ~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~-~~~~----~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~ 329 (965)
.|||+.++ |+.+|+|.+|+.++++... .... .....+...++.+.++++++.+.+++++++||++|++.
T Consensus 3 ~yld~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~ 76 (384)
T 1eg5_A 3 VYFDNNAT------TRVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLGVSPSEIFFTSCATESINW 76 (384)
T ss_dssp EECBTTTC------CCCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTSCGGGEEEESCHHHHHHH
T ss_pred EEEecCcc------CCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHH
Confidence 58887664 4689999999999987631 1000 01123456789999999997666799999999999999
Q ss_pred HHHHHHHHHHhcCCCCceEEEEEcCCccCCccccc--cccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHH
Q psy8199 330 ALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGAL--AVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCA 407 (965)
Q Consensus 330 Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 407 (965)
+++.+..++ ..++++|++.+++||+...... ...| ..+..+|.... +. .|
T Consensus 77 ~~~~~~~~~----~~~gd~vl~~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~-~~-----------~d 128 (384)
T 1eg5_A 77 ILKTVAETF----EKRKRTIITTPIEHKAVLETMKYLSMKG------------FKVKYVPVDSR-GV-----------VK 128 (384)
T ss_dssp HHHHHHHHT----TTTCCEEEECTTSCHHHHHHHHHHHHTT------------CEEEECCBCTT-SC-----------BC
T ss_pred HHHhhhhhc----cCCCCEEEECCCCchHHHHHHHHHHhcC------------CEEEEEccCCC-Cc-----------cC
Confidence 999886311 0246789999999988643321 1111 12333333211 11 36
Q ss_pred HHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcC--CeEEEeccccCCCcccccccccccCCCcc
Q psy8199 408 IFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYN--IHLIADEIAVGCGRTGKFFACEHAEIWPD 485 (965)
Q Consensus 408 ~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g--~llI~DEv~tg~gr~G~~~~~~~~~~~pD 485 (965)
+++|++++. +++++|++++ ++|++|.+.+ +++|.++|++|| +++|+||+|+ ||.. .+... ...+|
T Consensus 129 ~~~l~~~i~---~~~~~v~~~~-~~nptG~~~~----~~~i~~l~~~~~~~~~li~Dea~~-~~~~--~~~~~--~~~~d 195 (384)
T 1eg5_A 129 LEELEKLVD---EDTFLVSIMA-ANNEVGTIQP----VEDVTRIVKKKNKETLVHVDAVQT-IGKI--PFSLE--KLEVD 195 (384)
T ss_dssp HHHHHHHCC---TTEEEEEEES-BCTTTCBBCC----HHHHHHHHHHHCTTCEEEEECTTT-TTTS--CCCCT--TTCCS
T ss_pred HHHHHHHhC---CCCeEEEEEC-CCCCcccccC----HHHHHHHHHhcCCceEEEEEhhhh-cCCc--ccCch--hcCCC
Confidence 788888875 3578888888 8999999887 899999999999 9999999997 6543 12222 23578
Q ss_pred eeeec--cccCCCcccceeeeecHHH--HHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc--ccHHHHHHHHHH
Q psy8199 486 FLCLS--KGITGGYLPLSLVMTTDKI--YNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK--DNILQRISQDMK 559 (965)
Q Consensus 486 ivt~s--K~l~gG~~pig~v~~~~~i--~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~--~~~~~~~~~~~~ 559 (965)
++++| |.++. ..+|++++++++ ...+.. .. ......+++.++++++++.++|+.+.+ ++..++++++.+
T Consensus 196 i~~~s~sK~~g~--~G~G~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~ 270 (384)
T 1eg5_A 196 YASFSAHKFHGP--KGVGITYIRKGVPIRPLIHG-GG--QERGLRSGTQNVPGIVGAARAMEIAVEELSEAAKHMEKLRS 270 (384)
T ss_dssp EEEEEGGGGTSC--TTCEEEEECTTSCCCCSBCS-SC--TTTTTBCSCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred EEEecHHHhcCC--CceEEEEEcCCCcccccccc-Cc--ccccccCCCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 88766 96443 127999998875 222211 00 001124567889999999999987543 456777888888
Q ss_pred HHHHHHHcccCCCceeeeec----eeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec------------------
Q psy8199 560 KITKALTSLITHPKIINFRQ----KGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI------------------ 617 (965)
Q Consensus 560 ~l~~~L~~l~~~~~i~~v~g----~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~------------------ 617 (965)
++.+.|++. ++..+.. .+.++.+.+. +. ....+.+.|.++||.+.++
T Consensus 271 ~l~~~L~~~----g~~~~~~~~~~~~~~~~~~~~--~~-----~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g 339 (384)
T 1eg5_A 271 KLVSGLMNL----GAHIITPLEISLPNTLSVSFP--NI-----RGSTLQNLLSGYGIYVSTSSACTSKDERLRHVLDAMG 339 (384)
T ss_dssp HHHHHHHTT----TCEECSCTTSBCTTEEEEECT--TC-----CHHHHHHHHHHTTEECBC------------CHHHHTT
T ss_pred HHHHHhCCC----CeEEeCCcccCCCCEEEEEeC--CC-----CHHHHHHHHhhCCeEEeccccccCCCCcchHHHHHcC
Confidence 888888762 3322211 2345555543 10 1346778888999999873
Q ss_pred ------CCEEEEeCCcccCHHHHHHHHHhhhccc
Q psy8199 618 ------GNTVYLMPPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 618 ------~~~lR~~p~~~~t~~~i~~~~~~l~~~~ 645 (965)
.+++||+++..+++++++++++++.+.+
T Consensus 340 ~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~ 373 (384)
T 1eg5_A 340 VDRRIAQGAIRISLCKYNTEEEVDYFLKKIEEIL 373 (384)
T ss_dssp CCHHHHHHEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred CChhhcCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 2589999888899999999999887654
|
| >1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.2e-21 Score=217.14 Aligned_cols=308 Identities=11% Similarity=0.065 Sum_probs=204.1
Q ss_pred cccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcC---CCCCeEEEcCChhHHHHHH
Q psy8199 254 KRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQ---YKLGHCFYGSDGASAVEVA 330 (965)
Q Consensus 254 ~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~---~~~~~v~~~~sGseA~~~A 330 (965)
.+++|+.++.. +++ .+|++.+|+.+++..... .+++.....++.+.++++++ .+.+++++++||++|++.+
T Consensus 19 ~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~---~~y~~~~~~~lr~~la~~~~~~~~~~~~v~~~~G~~~al~~~ 92 (335)
T 1uu1_A 19 RDKTYLALNEN--PFP-FPEDLVDEVFRRLNSDAL---RIYYDSPDEELIEKILSYLDTDFLSKNNVSVGNGADEIIYVM 92 (335)
T ss_dssp CCSEEESSCCC--SSC-CCHHHHHHHHHTCCGGGG---GSCCCSSCHHHHHHHHHHHTCSSCCGGGEEEESSHHHHHHHH
T ss_pred CcceECCCCCC--CCC-CCHHHHHHHHHHhhhhhh---hcCCCCchHHHHHHHHHHcCCCCCCHHHEEEcCChHHHHHHH
Confidence 46888887743 455 689999999988743211 12222235667777777775 5668999999999999999
Q ss_pred HHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHH
Q psy8199 331 LKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFD 410 (965)
Q Consensus 331 l~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 410 (965)
++.+ +++|++. ++||++.......+. .+..+|...... .|+++
T Consensus 93 ~~~~-----------gd~Vl~~-p~y~~~~~~~~~~g~-------------~~~~v~~~~~~~------------~d~~~ 135 (335)
T 1uu1_A 93 MLMF-----------DRSVFFP-PTYSCYRIFAKAVGA-------------KFLEVPLTKDLR------------IPEVN 135 (335)
T ss_dssp HHHS-----------SEEEECS-SSCHHHHHHHHHHTC-------------EEEECCCCTTSC------------CCCCC
T ss_pred HHHh-----------CCcEEEC-CCcHHHHHHHHHcCC-------------eEEEeccCCCCC------------CCHHH
Confidence 8865 3678998 999998543322221 222333221101 02222
Q ss_pred HHHHHHhCCCcEEEEE-EccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccccccc-ccccCCCcceee
Q psy8199 411 LEILLKKNHNKIAAII-IEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFA-CEHAEIWPDFLC 488 (965)
Q Consensus 411 le~~l~~~~~~~aaii-~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~-~~~~~~~pDivt 488 (965)
| +++++|+ ++| +|++|.+. +.+.+++|.++| | ++|+||+|++|+. +.... .+..+....+.+
T Consensus 136 l--------~~~~~v~l~~p--~nptG~~~-~~~~l~~l~~~~---~-~li~De~~~~~~~-~~~~~~~~~~~~~i~~~s 199 (335)
T 1uu1_A 136 V--------GEGDVVFIPNP--NNPTGHVF-EREEIERILKTG---A-FVALDEAYYEFHG-ESYVDFLKKYENLAVIRT 199 (335)
T ss_dssp C--------CTTEEEEEESS--CTTTCCCC-CHHHHHHHHHTT---C-EEEEECTTHHHHC-CCCGGGGGTCSSEEEEEE
T ss_pred c--------CCCCEEEEeCC--CCCCCCCC-CHHHHHHHHHhC---C-EEEEECcchhhcc-hhHHHHhhhCCCEEEEec
Confidence 2 1234454 666 88999876 555555555554 8 9999999997643 22111 122222234457
Q ss_pred eccccC-CCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHHH
Q psy8199 489 LSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN-KDNILQRISQDMKKITKALT 566 (965)
Q Consensus 489 ~sK~l~-gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~-~~~~~~~~~~~~~~l~~~L~ 566 (965)
+||.++ .| +++|++++++++++.+.. ...+++.|+++++++.++|+..+ -+...++++++.+++.+.|+
T Consensus 200 ~sK~~g~~G-~r~G~~~~~~~~~~~l~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~ 270 (335)
T 1uu1_A 200 FSKAFSLAA-QRVGYVVASEKFIDAYNR--------VRLPFNVSYVSQMFAKVALDHREIFEERTKFIVEERERMKSALR 270 (335)
T ss_dssp STTTTTCGG-GCCEEEEECHHHHHHHHH--------HSCTTCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhcCCcc-cCeEEEEeCHHHHHHHHH--------hcCCCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999987 55 899999999999888765 12456889999999999997531 23456777788888888887
Q ss_pred cccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecCCEEEEeCCcccCHHHHHHHHHhhhc
Q psy8199 567 SLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQ 643 (965)
Q Consensus 567 ~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~lR~~p~~~~t~~~i~~~~~~l~~ 643 (965)
++ ++...++.|.++.+.+. + .....+.+.|.++||++.+..+++|+++. ++++++++++++.+
T Consensus 271 ~~----g~~~~~~~~~~~~~~~~--~-----~~~~~~~~~l~~~gi~v~~~~~~iRis~~---~~~~i~~~~~~l~~ 333 (335)
T 1uu1_A 271 EM----GYRITDSRGNFVFVFME--K-----EEKERLLEHLRTKNVAVRSFREGVRITIG---KREENDMILRELEV 333 (335)
T ss_dssp HH----TCCBCCCCSSEEEEECC--T-----HHHHHHHHHHHHHTEEEEEETTEEEEECC---CHHHHHHHHHHHHC
T ss_pred HC----CcEEcCCCCeEEEEECC--C-----CCHHHHHHHHHHCCEEEEECCCeEEEEeC---CHHHHHHHHHHHHh
Confidence 65 22333455777766653 1 12346778888999999997789999953 46789999888765
|
| >3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-21 Score=224.66 Aligned_cols=344 Identities=10% Similarity=0.012 Sum_probs=205.6
Q ss_pred CcccccccccchhccCCCCCHHHHHHHHHHHhhc----c------ccccCCCCcHHHHHHHHHHHhhc--CCCCCeEEEc
Q psy8199 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKL----E------HVMLSNLTHKPVIKLSEKLSSLT--QYKLGHCFYG 320 (965)
Q Consensus 253 G~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~----~------~~~~~~~~~~~~~~la~~l~~~~--~~~~~~v~~~ 320 (965)
+..++|+..|... ..|.+.+++.+++.+. . .|....+..+.+..+++.+.+.. +.+.++|++|
T Consensus 30 ~~~~i~l~~g~p~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t 104 (417)
T 3g7q_A 30 TPGAIMLGGGNPA-----HIPAMQDYFQTLLTDMVESGKAADALCNYDGPQGKTALLNALAVLLRETLGWDIEPQNIALT 104 (417)
T ss_dssp --CCEECSCCCCC-----CCHHHHHHHHHHHHHHHHHTHHHHHHHSTTCTTSHHHHHHHHHHHHHHHHCCCCCGGGEEEE
T ss_pred CCCceEecCcCCC-----CCChHHHHHHHHHHHHhhCCcccceeeccCCCCCcHHHHHHHHHHHHHHhCCCCCcccEEEe
Confidence 3567777666331 1354445555444332 1 12212222344445555554433 3456799999
Q ss_pred CChhHHHHHHHHHHHHHHHhcCC-CCceEEEEE-cCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCC
Q psy8199 321 SDGASAVEVALKMSFHYWYNKGF-LNKKKFICL-QNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGN 398 (965)
Q Consensus 321 ~sGseA~~~Al~~a~~~~~~~g~-~~~~~vi~~-~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (965)
+||++|++.+++.+... |. .++.+|++. +++||++...+..... +......+..++.......
T Consensus 105 ~G~t~al~~~~~~l~~~----gd~~~~~~vi~~~~p~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~---- 169 (417)
T 3g7q_A 105 NGSQSAFFYLFNLFAGR----RADGSTKKVLFPLAPEYIGYADSGLEDDL-------FVSARPNIELLPEGQFKYH---- 169 (417)
T ss_dssp SCHHHHHHHHHHHHSBC--------CCBEEEESSCCCHHHHHC-----CC-------EEECCCEEEEEGGGEEEEE----
T ss_pred CCcHHHHHHHHHHHcCC----CccCCcceEEEeCCCccccchhhccchhh-------hccccCcccccCCcccccc----
Confidence 99999999999987431 10 011278886 9999998654432211 0111111222221000000
Q ss_pred ChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccc-cc
Q psy8199 399 SANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFF-AC 477 (965)
Q Consensus 399 ~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~-~~ 477 (965)
.|+++|+ + .+++++|+++. ++|++|.+. +.+.+++|.++|++||+++|+||+|..+ ..+..+ ..
T Consensus 170 -------~d~~~l~--~---~~~~~~v~~~~-p~NptG~~~-~~~~~~~l~~~a~~~~~~li~De~~~~~-~~~~~~~~~ 234 (417)
T 3g7q_A 170 -------VDFEHLH--I---GEETGMICVSR-PTNPTGNVI-TDEELMKLDRLANQHNIPLVIDNAYGVP-FPGIIFSEA 234 (417)
T ss_dssp -------CCGGGCC--C---CTTEEEEEEES-SCTTTCCCC-CHHHHHHHHHHHHHTTCCEEEECTTCTT-TTCCBCSCC
T ss_pred -------cCHHHhc--c---ccCceEEEECC-CCCCCCCcc-CHHHHHHHHHHHHHcCCEEEEeCCCccc-ccccccccc
Confidence 1345554 2 34567777766 689999776 6677999999999999999999999643 111111 00
Q ss_pred --cccCCCcceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc-----ccH
Q psy8199 478 --EHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK-----DNI 550 (965)
Q Consensus 478 --~~~~~~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~-----~~~ 550 (965)
...+....+.+|||....| +++|++++++++++.+.. ..+..+++.++++++++.+.|+...- +.+
T Consensus 235 ~~~~~~~~i~~~s~sK~~~~G-~r~G~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 307 (417)
T 3g7q_A 235 RPLWNPNIILCMSLSKLGLPG-SRCGIIIANDKTITAIAN------MNGIISLAPGGMGPAMMCEMIKRNDLLRLSETVI 307 (417)
T ss_dssp CCCCCTTEEEEEESGGGTCTT-SCCEEEECCHHHHHHHHH------HHHHHCCCCCSHHHHHHHHHHHTTCHHHHHHHTH
T ss_pred ccCCCCCEEEEEechhccCCC-cceEEEEeCHHHHHHHHH------hhcceeeCCCcHHHHHHHHHHcCcchHHHHHHHH
Confidence 0112222255899954445 899999999999988865 34566788899999999988863211 124
Q ss_pred HHHHHHHHHHHHHHHHcc-cCCCceeee-eceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec-----------
Q psy8199 551 LQRISQDMKKITKALTSL-ITHPKIINF-RQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI----------- 617 (965)
Q Consensus 551 ~~~~~~~~~~l~~~L~~l-~~~~~i~~v-~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~----------- 617 (965)
.++++++.+++.+.|++. ... ++... +..|+++++.+. ..+. ....+.+.|.++||.+.|+
T Consensus 308 ~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~g~~~~~~~~-~~~~----~~~~l~~~l~~~gi~v~~g~~f~~~~~~~~ 381 (417)
T 3g7q_A 308 KPFYYQRVQQTIAIIRRYLSEE-RCLIHKPEGAIFLWLWFK-DLPI----TTELLYQRLKARGVLMVPGHYFFPGLDKPW 381 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHCCTT-TCEEECCCBSSEEEEECT-TCSS----CHHHHHHHHHHTTEECEEGGGGCTTBSSCC
T ss_pred HHHHHHHHHHHHHHHHHhcccC-CceeeCCCcceEEEEEcC-CCCC----CHHHHHHHHHHCCEEEECchhhCCCCcccc
Confidence 455666777777777653 322 23322 345677777664 1111 1346778889999999873
Q ss_pred ---CCEEEEeCCcccCHHHHHHHHHhhhcccc
Q psy8199 618 ---GNTVYLMPPYILNKNEIQHMTSAIFQTFN 646 (965)
Q Consensus 618 ---~~~lR~~p~~~~t~~~i~~~~~~l~~~~~ 646 (965)
.+++||+++. ++++++++++++.+++.
T Consensus 382 ~~~~~~iRis~~~--~~~~i~~~~~~l~~~l~ 411 (417)
T 3g7q_A 382 PHTHQCMRMNYVP--EPDKIEAGVKILAEEIE 411 (417)
T ss_dssp GGGGGEEEEESCS--CHHHHHHHHHHHHHHHH
T ss_pred ccCCCeEEEEecC--CHHHHHHHHHHHHHHHH
Confidence 2589999874 99999999999876654
|
| >3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.9e-22 Score=228.51 Aligned_cols=344 Identities=10% Similarity=0.002 Sum_probs=218.0
Q ss_pred cccccccchhccCCCCCHHHHHHHHHHHh--hccccccCCCCcH-HHHHHHHHHHhhcCCCCCeEEEcCChhHHH--HHH
Q psy8199 256 YLDAISSWWVNLFGHSNSYINKALKNQLN--KLEHVMLSNLTHK-PVIKLSEKLSSLTQYKLGHCFYGSDGASAV--EVA 330 (965)
Q Consensus 256 ylD~~~~~~~~~lGh~~p~v~~av~~~~~--~~~~~~~~~~~~~-~~~~la~~l~~~~~~~~~~v~~~~sGseA~--~~A 330 (965)
.+|+..|.....+-..+|.+.+++.+++. .... ...|+.. ...+|.+.++++++.+.++|++|+|+++|+ ..+
T Consensus 34 ~i~l~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~--~~~Y~~~~G~~~lr~~ia~~~~~~~~~i~~t~G~~~al~l~~~ 111 (422)
T 3d6k_A 34 SLDLTRGKPSAEQLDLSNDLLSLPGGDFRTKDGVD--CRNYGGLLGIADIRELWAEALGLPADLVVAQDGSSLNIMFDLI 111 (422)
T ss_dssp CEECCCCSCCHHHHHTTGGGGGCSTTCCBCTTCCB--TTSSCCSSCCHHHHHHHHHHHTCCGGGEEECSSCHHHHHHHHH
T ss_pred eEeCCCCCCChhhCCCcHHHHHHHHHHHhhccchh--hhCCCCCCCCHHHHHHHHHHhCCChhHEEEecchHHHHHHHHH
Confidence 67877664421111134467776665421 1101 1123222 256777777777776778999999999997 556
Q ss_pred HHHHHHHHHhcCCC-----CceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHH
Q psy8199 331 LKMSFHYWYNKGFL-----NKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIAR 405 (965)
Q Consensus 331 l~~a~~~~~~~g~~-----~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (965)
+++...-+ ..|.. .+++|++.+++|+++.......+. .+..+|.... +
T Consensus 112 ~~~l~~~~-~~g~~~~~~~d~~~Vl~~~p~y~~~~~~~~~~g~-------------~~~~v~~~~~-g------------ 164 (422)
T 3d6k_A 112 SWSYTWGN-NDSSRPWSAEEKVKWLCPVPGYDRHFTITEHFGF-------------EMINVPMTDE-G------------ 164 (422)
T ss_dssp HHHHHHCC-TTCSSCGGGSSCCEEEEEESCCHHHHHHHHHHTC-------------EEEEEEEETT-E------------
T ss_pred HHHhcCcc-cccccccccCCCCEEEEeCCccHHHHHHHHHcCC-------------EEEecCCCCC-C------------
Confidence 56553300 00000 134799999999998544333222 2233332110 0
Q ss_pred HHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHH-hcCCeEEEecccc--CCCcccc-cccc----
Q psy8199 406 CAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICN-NYNIHLIADEIAV--GCGRTGK-FFAC---- 477 (965)
Q Consensus 406 ~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~-~~g~llI~DEv~t--g~gr~G~-~~~~---- 477 (965)
.|+++|++++.+ .++++|++.|.++|++|.+. +.+++++|.++|+ +||+++|+||+|. +|+..|. ....
T Consensus 165 ~d~~~l~~~l~~--~~~~~v~~~~~~~NPtG~~~-~~~~l~~l~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~ 241 (422)
T 3d6k_A 165 PDMGVVRELVKD--PQVKGMWTVPVFGNPTGVTF-SEQTCRELAEMSTAAPDFRIVWDNAYALHTLSDEFPIVHNVIEFA 241 (422)
T ss_dssp ECHHHHHHHHTS--TTEEEEEECCSSCTTTCCCC-CHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHH
T ss_pred CCHHHHHHHHhc--CCCeEEEEcCCCCCCCCCCC-CHHHHHHHHHHHhhccCCEEEEECCccccccCCCCCCCcChhhHh
Confidence 267889888853 35677775553688888765 8888999999999 9999999999997 3654442 1122
Q ss_pred ---cccCCCcceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh---c--cc
Q psy8199 478 ---EHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN---K--DN 549 (965)
Q Consensus 478 ---~~~~~~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~---~--~~ 549 (965)
+..+....+.+|||.++.| +++|++++++++++.+.. .....+++.++++++++.++|+... + +.
T Consensus 242 ~~~~~~~~~i~~~S~SK~~~~G-lriG~~~~~~~l~~~l~~------~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~ 314 (422)
T 3d6k_A 242 QAAGNPNRFWFMSSTSKITHAG-SGVSFFASSKENIEWYAS------HANVRGIGPNKLNQLAHAQFFGDVAGLKAHMLK 314 (422)
T ss_dssp HHTTCTTCEEEEEESTTTSCTT-SSCEEEECCHHHHHHHHH------HHHHHCSCCCHHHHHHHHHHHCSHHHHHHHHHH
T ss_pred hccCCCCcEEEEcChhhhcCcc-cceEEEEeCHHHHHHHHH------HHHhhcCCCCHHHHHHHHHHHhCcchHHHHHHH
Confidence 1223344556899975556 899999999999888765 2344567789999999988885310 0 12
Q ss_pred HHHHHHHHHHHHHHHHHcc-cCCCceeeeec-eeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec----------
Q psy8199 550 ILQRISQDMKKITKALTSL-ITHPKIINFRQ-KGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI---------- 617 (965)
Q Consensus 550 ~~~~~~~~~~~l~~~L~~l-~~~~~i~~v~g-~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~---------- 617 (965)
..+.++++.+++.+.|.+. ...+.+..+.+ .|+++++.+. +. ....+.+.|.++||++.|+
T Consensus 315 ~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~~g~~~~~~~~--~~-----~~~~~~~~l~~~gV~v~~~g~~f~~~~~~ 387 (422)
T 3d6k_A 315 HAASLAPKFERVLEILDSRLSEYGVAKWTSPTGGYFISVDVV--PG-----TASRVVELAKEAGIALTGAGSSFPLHNDP 387 (422)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGTCEEECCCSBSSCEEEEES--TT-----CHHHHHHHHHHTTEECCCTTTTSGGGCCT
T ss_pred HHHHHHHHHHHHHHHHHHhcCcCCceEEeCCCcceEEEEECC--CC-----CHHHHHHHHHHCCeEEEcCccccCCCCCC
Confidence 2344445566666666543 33333443333 5677777774 21 1345677888999999872
Q ss_pred -CCEEEEeCCcccCHHHHHHHHHhhhcccc
Q psy8199 618 -GNTVYLMPPYILNKNEIQHMTSAIFQTFN 646 (965)
Q Consensus 618 -~~~lR~~p~~~~t~~~i~~~~~~l~~~~~ 646 (965)
.+++||+++. .++++++++++++.+.+.
T Consensus 388 ~~~~iRis~~~-~~~e~i~~~~~~l~~~l~ 416 (422)
T 3d6k_A 388 NNENIRLAPSL-PPVAELEVAMDGFATCVL 416 (422)
T ss_dssp TSCEEEECCSS-SCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEecCC-CCHHHHHHHHHHHHHHHH
Confidence 2689999776 899999999999876543
|
| >3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=6.9e-22 Score=229.49 Aligned_cols=353 Identities=12% Similarity=0.095 Sum_probs=234.4
Q ss_pred ecCCcccccccccchhccCCCCCHHHHHHHHHHHhhcccc----ccCC--CCcHHHHHHHHHHHhhcCCCCCeEEEcCCh
Q psy8199 250 TFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHV----MLSN--LTHKPVIKLSEKLSSLTQYKLGHCFYGSDG 323 (965)
Q Consensus 250 d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~----~~~~--~~~~~~~~la~~l~~~~~~~~~~v~~~~sG 323 (965)
|.++..|+|.. .+|+.++.+.+++.++++..... +..+ ...+...++.++++++++...++|+|++|+
T Consensus 64 ~~~~~iyld~~------~~g~~p~~v~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~t~g~ 137 (465)
T 3e9k_A 64 KDENAIYFLGN------SLGLQPKMVKTYLEEELDKWAKIAAYGHEVGKRPWITGDESIVGLMKDIVGANEKEIALMNAL 137 (465)
T ss_dssp TTCBCEECBTT------TSCCEETTHHHHHHHHHHHHHHHGGGGGTSSSSCGGGTTHHHHGGGHHHHTCCGGGEEECSCH
T ss_pred CCCCeEEecCC------ccCCChHHHHHHHHHHHHHHHhhCCcccccCCccHHHhHHHHHHHHHHHcCCCcCCEEEECCH
Confidence 44566788864 36777888988888877553211 1111 123445678889999988777899999999
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHH
Q psy8199 324 ASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEI 403 (965)
Q Consensus 324 seA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (965)
++++..+++.+.+. | .++++|++.+++||+......+.....+..... ..+...|.+... .
T Consensus 138 t~al~~~~~~~~~~----~-~~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~~~~----~~v~~~~~~~~~-~--------- 198 (465)
T 3e9k_A 138 TVNLHLLMLSFFKP----T-PKRYKILLEAKAFPSDHYAIESQLQLHGLNIEE----SMRMIKPREGEE-T--------- 198 (465)
T ss_dssp HHHHHHHHHHHCCC----C-SSSCEEEEETTCCHHHHHHHHHHHHHTTCCHHH----HEEEECCCTTCS-S---------
T ss_pred HHHHHHHHHHhccc----c-CCCCEEEEcCCcCCchHHHHHHHHHHcCCccee----eeEEEecCCCCC-c---------
Confidence 99999999877431 1 346779999999998543222111000000000 001122322111 1
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCC
Q psy8199 404 ARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIW 483 (965)
Q Consensus 404 ~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~ 483 (965)
.|+++|+++++++.+++++|++++ ++|++|.+.+ +++|.++|++||+++|+|++|+ +|.. ...... ..
T Consensus 199 --~d~~~l~~~i~~~~~~~~lv~~~~-~~n~tG~~~~----l~~i~~la~~~g~~vi~D~a~~-~g~~--~~~~~~--~~ 266 (465)
T 3e9k_A 199 --LRIEDILEVIEKEGDSIAVILFSG-VHFYTGQHFN----IPAITKAGQAKGCYVGFDLAHA-VGNV--ELYLHD--WG 266 (465)
T ss_dssp --CCHHHHHHHHHHHGGGEEEEEEES-BCTTTCBBCC----HHHHHHHHHHTTCEEEEECTTT-TTTS--CCCHHH--HT
T ss_pred --cCHHHHHHHHHhcCCCeEEEEEeC-cccCcceeec----HHHHHHHHHHcCCEEEEEhhhh-cCCc--CCchhh--cC
Confidence 267899999976545789999999 8999999987 8999999999999999999996 4322 112222 23
Q ss_pred cceee--eccccCCCcccceeeeecHHHHHhhhccC-Cc------cccccc--C----------CCCCCHHHHHHHHHHH
Q psy8199 484 PDFLC--LSKGITGGYLPLSLVMTTDKIYNSIYYKN-NI------NIFLHS--H----------SYSGNPLACCAALATL 542 (965)
Q Consensus 484 pDivt--~sK~l~gG~~pig~v~~~~~i~~~~~~~~-~~------~~~~~~--~----------t~~~~~~~~aaa~a~L 542 (965)
.|+++ ++|.+.+|..++|++++++++.+.+.... ++ ..+... . ..+.+++++++..+++
T Consensus 267 ~D~~~~s~~K~l~~gp~~~g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~aal 346 (465)
T 3e9k_A 267 VDFACWCSYKYLNAGAGGIAGAFIHEKHAHTIKPALVGWFGHELSTRFKMDNKLQLIPGVCGFRISNPPILLVCSLHASL 346 (465)
T ss_dssp CCEEEECSSSTTCCCTTCCCEEEECGGGTTTSCCSSCCGGGBCHHHHTTCCSCCCBCSSGGGGCCSCCCHHHHHHHHHHH
T ss_pred CCEEEECcccccccCCCceEEEEEcHHHHhhcCCcccCccCCCCCcccccCCCcCcCCChHHhccCCccHHHHHHHHHHH
Confidence 57775 56999655457899999998876654310 00 000000 0 1156788888889999
Q ss_pred HHHhc---ccHHHHHHHHHHHHHHHHHcccC-------CCceeeee-----ceeEEEEEEEeecCccchhhHHHHHHHHH
Q psy8199 543 EIFNK---DNILQRISQDMKKITKALTSLIT-------HPKIINFR-----QKGMIWAFDVIIEDPEQIETFSKKFFVAA 607 (965)
Q Consensus 543 ~~~~~---~~~~~~~~~~~~~l~~~L~~l~~-------~~~i~~v~-----g~G~~~~i~~~~~~~~~~~~~~~~~~~~l 607 (965)
+.+.+ +.+.++.+++.+++.+.|+++.. .+++..+. ..|.++.+.+. .+ ...+.+.|
T Consensus 347 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~p~~~~~~g~~~~~~~~-~~-------~~~l~~~L 418 (465)
T 3e9k_A 347 EIFKQATMKALRKKSVLLTGYLEYLIKHNYGKDKAATKKPVVNIITPSHVEERGCQLTITFS-VP-------NKDVFQEL 418 (465)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHCC---------CEEECSCSSGGGBCSCEEEEEC-CT-------TCCHHHHH
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCeEEeCCCCHhhcccEEEEEec-CC-------HHHHHHHH
Confidence 88764 45777888888888888876411 13444332 24888888774 11 12467888
Q ss_pred HHcCcEEeecC-CEEEEeC-CcccCHHHHHHHHHhhhccccc
Q psy8199 608 LKNELLLRPIG-NTVYLMP-PYILNKNEIQHMTSAIFQTFNE 647 (965)
Q Consensus 608 ~~~Gi~~~~~~-~~lR~~p-~~~~t~~~i~~~~~~l~~~~~~ 647 (965)
.++||++...+ +++||+| |+..+.++++++++.+.+++.+
T Consensus 419 ~~~Gi~v~~~~~~~iRis~~~~~~t~edi~~~~~~l~~~l~~ 460 (465)
T 3e9k_A 419 EKRGVVCDKRNPNGIRVAPVPLYNSFHDVYKFTNLLTSILDS 460 (465)
T ss_dssp HTTTEECEEETTTEEEEBCCTTTCCHHHHHHHHHHHHHHHTC
T ss_pred HHCCEEEecCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHHh
Confidence 89999988653 8999999 8999999999999998776543
|
| >3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.8e-21 Score=220.08 Aligned_cols=318 Identities=12% Similarity=0.077 Sum_probs=219.8
Q ss_pred CCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCC--CeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceE
Q psy8199 271 SNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKL--GHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKK 348 (965)
Q Consensus 271 ~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~--~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~ 348 (965)
.+|++.+|+.+++... ......+...++.+++++.++... +++++++||++|++ +++.+. .++++
T Consensus 13 ~~~~v~~a~~~~~~~~----~~~~~~~~~~~~~~~la~~~~~~~~~~~v~~~~g~t~al~-~~~~~~--------~~gd~ 79 (384)
T 3zrp_A 13 IKEDVLVAGLENNVGF----TSKEFVEALAYSLKGLRYVMGASKNYQPLIIPGGGTSAME-SVTSLL--------KPNDK 79 (384)
T ss_dssp CCHHHHHHTTCCSCCT----TSHHHHHHHHHHHHHHHHHHTCCTTSEEEEEESCHHHHHH-HGGGGC--------CTTCE
T ss_pred CCHHHHHHhhcccccc----ccHHHHHHHHHHHHHHHHHhCCCCCCcEEEEcCCcHHHHH-HHHhhc--------CCCCE
Confidence 4788888887765321 111235567889999999988666 78999999999999 887552 36788
Q ss_pred EEEEcCCccCCcccccc-ccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEE
Q psy8199 349 FICLQNSYHGETLGALA-VTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIII 427 (965)
Q Consensus 349 vi~~~~~yHg~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ 427 (965)
|++.+++||+.....+. ..| ..+..+|.+... . .|+++|++++.++ ++++|++
T Consensus 80 vi~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~-~-----------~d~~~l~~~i~~~--~~~~v~~ 133 (384)
T 3zrp_A 80 ILVVSNGVFGDRWEQIFKRYP------------VNVKVLRPSPGD-Y-----------VKPGEVEEEVRKS--EYKLVAL 133 (384)
T ss_dssp EEEECSSHHHHHHHHHHTTSS------------CEEEEECCSTTC-C-----------CCHHHHHHHHHHS--CEEEEEE
T ss_pred EEEecCCcchHHHHHHHHHcC------------CcEEEecCCCCC-C-----------CCHHHHHHHHHhC--CCcEEEE
Confidence 99999999985332221 111 133445543211 1 2688999999752 4788888
Q ss_pred ccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcceeee--ccccCCCcccceeeee
Q psy8199 428 EPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCL--SKGITGGYLPLSLVMT 505 (965)
Q Consensus 428 ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~--sK~l~gG~~pig~v~~ 505 (965)
++ ++|++|.+.+ +++|.++|++||+++|+||+|+ +|.. ..... ...+|++++ +|+++|+ .++|++++
T Consensus 134 ~~-~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~~~~--~~~~~--~~~~d~~~~s~~K~~~~~-~g~g~~~~ 202 (384)
T 3zrp_A 134 TH-VETSTGVREP----VKDVINKIRKYVELIVVDGVSS-VGAE--EVKAE--EWNVDVYLTASQKALGSA-AGLGLLLL 202 (384)
T ss_dssp ES-EETTTTEECC----HHHHHHHHGGGEEEEEEECTTT-TTTS--CCCTT--TTTCSEEEEETTSTTCCC-SSEEEEEE
T ss_pred eC-CCCCCceECc----HHHHHHHHHhcCCEEEEECccc-ccCc--ccccc--ccCCCEEEecCcccccCC-CceEEEEE
Confidence 88 8999998887 9999999999999999999996 3321 11122 234788765 5999876 57999999
Q ss_pred cHHHHHhh-hccCCc------cccc---------ccCCC-CCCHHHHHHHHHHHHHHhcc---cHHHHHHHHHHHHHHHH
Q psy8199 506 TDKIYNSI-YYKNNI------NIFL---------HSHSY-SGNPLACCAALATLEIFNKD---NILQRISQDMKKITKAL 565 (965)
Q Consensus 506 ~~~i~~~~-~~~~~~------~~~~---------~~~t~-~~~~~~~aaa~a~L~~~~~~---~~~~~~~~~~~~l~~~L 565 (965)
++++++.+ ...... ..+. ....+ +.++.+++++.++++.+.+. .+.++.+++.+++.+.|
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L 282 (384)
T 3zrp_A 203 SPKALSILDSQNSIAGYYLDLRNWLPVMRGAEEGKAAYFATPPVHVILQLAEAFRLIEKEGIENRIKRHTMVASAIRAGL 282 (384)
T ss_dssp CHHHHHHHHHCCCSCCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHhcCCCCCCcccccHHHHHHHHHhhcccCCCcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 99988776 110000 0000 22223 45677777777888876543 57788888899999988
Q ss_pred HcccCCCceee--eeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecC----CEEEEeCCcccCHHHHHHHHH
Q psy8199 566 TSLITHPKIIN--FRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG----NTVYLMPPYILNKNEIQHMTS 639 (965)
Q Consensus 566 ~~l~~~~~i~~--v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~----~~lR~~p~~~~t~~~i~~~~~ 639 (965)
+++ ....+.. ....+.++.+.+. + .....+.+.|.++||.++++. +++|++++..+++++++++++
T Consensus 283 ~~~-g~~~~~~~~~~~~~~~~~~~~~--~-----~~~~~~~~~l~~~gi~v~~g~~~~~~~iRi~~~~~~~~e~i~~~~~ 354 (384)
T 3zrp_A 283 EAL-GLEIVARRPESYSNTVTGVILK--V-----ADPQKVLAGTVNEGVEFAPGVHPAFKYFRIGHMGWVTPNDAIIAIS 354 (384)
T ss_dssp HHT-TCCBSCSSGGGBCSSEEEEECS--S-----SCHHHHHHHHHTTTCCCEECCCTTCCEEEEECCSSCCHHHHHHHHH
T ss_pred HHC-CCeEccCcccccCccEEEEECC--C-----CCHHHHHHHHHHCCEEEecCCCCCcCEEEEeccccCCHHHHHHHHH
Confidence 876 2221111 1123566666654 1 114468888999999999876 789999999999999999999
Q ss_pred hhhcccc
Q psy8199 640 AIFQTFN 646 (965)
Q Consensus 640 ~l~~~~~ 646 (965)
++.+.+.
T Consensus 355 ~l~~~l~ 361 (384)
T 3zrp_A 355 VIERTLR 361 (384)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9876554
|
| >1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.87 E-value=3.6e-21 Score=216.03 Aligned_cols=331 Identities=15% Similarity=0.174 Sum_probs=220.9
Q ss_pred cccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCC--CCeEEEcCChhHHHHHHHHH
Q psy8199 256 YLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYK--LGHCFYGSDGASAVEVALKM 333 (965)
Q Consensus 256 ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~--~~~v~~~~sGseA~~~Al~~ 333 (965)
++|+..| +++ .+|+|.+|+.+++. +.. ..+.++...++.++++++++.. .+++++++||++|++.+++.
T Consensus 5 ~~~~~~g----p~~-~~~~v~~a~~~~~~---~~~-~~~~~~~~~~l~~~la~~~g~~~~~~~v~~~~g~t~a~~~~~~~ 75 (366)
T 1m32_A 5 YLLLTPG----PLT-TSRTVKEAMLFDSC---TWD-DDYNIGVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGS 75 (366)
T ss_dssp CEECSSS----SCC-CCHHHHHTTCCCCC---TTS-HHHHTTTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHH
T ss_pred cccccCC----CcC-CCHHHHHHHhhhhc---CCC-HHHHHHHHHHHHHHHHHHhCCCCcCcEEEEecChHHHHHHHHHH
Confidence 5777666 343 78999999887531 110 0111256678888888888621 24799999999999999998
Q ss_pred HHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHH
Q psy8199 334 SFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEI 413 (965)
Q Consensus 334 a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~ 413 (965)
++. ++++|+++++.||+....... ......+..+|.+.. +. .|+++|++
T Consensus 76 ~~~--------~gd~vi~~~~~~~~~~~~~~~-----------~~~g~~~~~v~~~~~-~~-----------~d~~~l~~ 124 (366)
T 1m32_A 76 ALG--------PQDKVLIVSNGAYGARMVEMA-----------GLMGIAHHAYDCGEV-AR-----------PDVQAIDA 124 (366)
T ss_dssp SCC--------TTCCEEEEESSHHHHHHHHHH-----------HHHTCCEEEEECCTT-SC-----------CCHHHHHH
T ss_pred hcC--------CCCeEEEEeCCCccHHHHHHH-----------HHhCCceEEEeCCCC-CC-----------CCHHHHHH
Confidence 742 456788888888875321111 001113344444321 11 36889999
Q ss_pred HHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcceee--ecc
Q psy8199 414 LLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLC--LSK 491 (965)
Q Consensus 414 ~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt--~sK 491 (965)
++++.. ++.+|++.. +++++|.+.+ +++|.++|++||+++|+||+|+ +|... +... ...+|+++ ++|
T Consensus 125 ~l~~~~-~~~~v~~~~-~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~-~~~~~--~~~~--~~~~di~~~s~~K 193 (366)
T 1m32_A 125 ILNADP-TISHIAMVH-SETTTGMLNP----IDEVGALAHRYGKTYIVDAMSS-FGGIP--MDIA--ALHIDYLISSANK 193 (366)
T ss_dssp HHHHCT-TCCEEEEES-EETTTTEECC----HHHHHHHHHHHTCEEEEECTTT-TTTSC--CCTT--TTTCSEEEEESSS
T ss_pred HHhcCC-CeEEEEEec-ccCCcceecC----HHHHHHHHHHcCCEEEEECCcc-ccCcC--cccc--ccCccEEEecCcc
Confidence 997642 344454444 4788998887 8999999999999999999997 54432 1222 23478874 679
Q ss_pred ccCCCcccceeeeecHHHHHhhhccCCccccc--------------ccCCCCCCHHHHHHHHHHHHHHhcc----cHHHH
Q psy8199 492 GITGGYLPLSLVMTTDKIYNSIYYKNNINIFL--------------HSHSYSGNPLACCAALATLEIFNKD----NILQR 553 (965)
Q Consensus 492 ~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~--------------~~~t~~~~~~~~aaa~a~L~~~~~~----~~~~~ 553 (965)
+++|+ .++|++++++++++.+... ...+. ....++.++.+++++.++|+.+.+. ...++
T Consensus 194 ~~~~~-~g~G~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~ 270 (366)
T 1m32_A 194 CIQGV-PGFAFVIAREQKLAACKGH--SRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQR 270 (366)
T ss_dssp TTCCC-SSEEEEEEEHHHHTTCTTC--CSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred cccCC-CceEEEEECHHHHHhhcCC--CCCccccHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHccCHhHHHHH
Confidence 98776 4789999999988776541 01110 0113678899999999999877543 36788
Q ss_pred HHHHHHHHHHHHHcccCCCceeee-eceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec----CCEEEEeCCcc
Q psy8199 554 ISQDMKKITKALTSLITHPKIINF-RQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI----GNTVYLMPPYI 628 (965)
Q Consensus 554 ~~~~~~~l~~~L~~l~~~~~i~~v-~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~----~~~lR~~p~~~ 628 (965)
++++.+++.+.|+++ ....+... ...|.++.+.+. .. . ......+.+.|.++||.+.++ .+++|++++..
T Consensus 271 ~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~~~~-~~--~-~~~~~~~~~~l~~~gi~v~~~~~~~~~~iRi~~~~~ 345 (366)
T 1m32_A 271 YQQNQRSLVAGMRAL-GFNTLLDDELHSPIITAFYSP-ED--P-QYRFSEFYRRLKEQGFVIYPGKVSQSDCFRIGNIGE 345 (366)
T ss_dssp HHHHHHHHHHHHHHT-TCCBSSCGGGBCSSEEEEECC-CC--T-TCCHHHHHHHHHHTTEECEECCCSSSCEEEEECCSS
T ss_pred HHHHHHHHHHHHHHC-CCeeccCchhcCceEEEEEcC-cc--C-CCCHHHHHHHHHHCCEEEECCcCCCCCEEEEecCCC
Confidence 888899999988775 22211111 123557777764 10 0 011446788899999999874 36999999998
Q ss_pred cCHHHHHHHHHhhhccc
Q psy8199 629 LNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 629 ~t~~~i~~~~~~l~~~~ 645 (965)
+++++++++++++.+.+
T Consensus 346 ~~~~~i~~~~~~l~~~~ 362 (366)
T 1m32_A 346 VYAADITALLTAIRTAM 362 (366)
T ss_dssp CCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 99999999999887654
|
| >1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=8.3e-21 Score=212.27 Aligned_cols=323 Identities=14% Similarity=0.132 Sum_probs=208.3
Q ss_pred CcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHH
Q psy8199 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALK 332 (965)
Q Consensus 253 G~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~ 332 (965)
...+|||.++ +.++.+|++++|+.+++.. + .......+...+++++++++++ ....++|++||++|++.|++
T Consensus 6 ~~~~id~~~~----~~~~~~~~v~~a~~~~~~~--~-~~~~~~~~~~~~l~~~la~~~g-~~~~v~~~~~gt~a~~~al~ 77 (356)
T 1v72_A 6 RPPALGFSSD----NIAGASPEVAQALVKHSSG--Q-AGPYGTDELTAQVKRKFCEIFE-RDVEVFLVPTGTAANALCLS 77 (356)
T ss_dssp CCCCCBCSCG----GGCCCCHHHHHHHHHTTSS--C-CCSTTCSHHHHHHHHHHHHHHT-SCCEEEEESCHHHHHHHHHH
T ss_pred CCceEeeccC----CccCCCHHHHHHHHhhccC--c-ccccccchHHHHHHHHHHHHhC-CCCcEEEeCCccHHHHHHHH
Confidence 3568999875 3467899999999988632 1 1122346778899999999997 43458999999999999999
Q ss_pred HHHHHHHhcCCCCceEEEEEcCCccCCcccc--cccc--CCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHH
Q psy8199 333 MSFHYWYNKGFLNKKKFICLQNSYHGETLGA--LAVT--NIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAI 408 (965)
Q Consensus 333 ~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 408 (965)
+++. +++.|++.+++ |+.+... +... | ..+..+|.+ .+. .|+
T Consensus 78 ~~~~--------~gd~vi~~~~~-~~~~~~~~~~~~~~~g------------~~~~~v~~~--~~~-----------~d~ 123 (356)
T 1v72_A 78 AMTP--------PWGNIYCHPAS-HINNDECGAPEFFSNG------------AKLMTVDGP--AAK-----------LDI 123 (356)
T ss_dssp TSCC--------TTEEEEECTTS-HHHHSSTTHHHHHTTS------------CEEEECCCG--GGC-----------CCH
T ss_pred HhcC--------CCCEEEEcCcc-chhhhhchHHHHHhCC------------cEEEEecCC--CCe-----------EcH
Confidence 7642 45677776654 4433322 2211 1 122333321 111 267
Q ss_pred HHHHH-HHHhC----CCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCc--ccccccccccC
Q psy8199 409 FDLEI-LLKKN----HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGR--TGKFFACEHAE 481 (965)
Q Consensus 409 ~~le~-~l~~~----~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr--~G~~~~~~~~~ 481 (965)
++|++ ++++. ..++++|+++| ++ ++|.+ ++.+++++|.++|++||+++|+||+|..++. .|. ....++
T Consensus 124 ~~l~~~~i~~~~~~~~~~~~~v~~~~-~~-~tG~~-~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~--~~~~~~ 198 (356)
T 1v72_A 124 VRLRERTREKVGDVHTTQPACVSITQ-AT-EVGSI-YTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGC--SPAEMT 198 (356)
T ss_dssp HHHHHHTTSSTTCTTSCEEEEEEEES-SC-TTSCC-CCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTC--CTTTTT
T ss_pred HHHHHHhhhcchhhccCCceEEEEEc-CC-CCCcc-CCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCC--CHHHhh
Confidence 88888 77531 23688999998 66 47865 5789999999999999999999999974311 111 111122
Q ss_pred --CCcceee--eccccCCCcccce--eeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcc---cHHH
Q psy8199 482 --IWPDFLC--LSKGITGGYLPLS--LVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKD---NILQ 552 (965)
Q Consensus 482 --~~pDivt--~sK~l~gG~~pig--~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~---~~~~ 552 (965)
...|+++ ++|+ | +|+| ++++++++++.+..- ..+.++.... ++.++.++++.++++ +..+
T Consensus 199 ~~~~~d~~~~s~sK~--g--~~~G~g~~~~~~~~~~~~~~~-----~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~ 267 (356)
T 1v72_A 199 WKAGVDALSFGATKN--G--VLAAEAIVLFNTSLATEMSYR-----RKRAGHLSSK--MRFLSAQIDAYLTDDLWLRNAR 267 (356)
T ss_dssp GGGTCCEEEECCGGG--T--CSSCEEEEESSGGGHHHHHHH-----HHHTTCCCSS--THHHHHHHHHHTSTTHHHHHHH
T ss_pred hhhcCCEEEEecccC--C--CcCccEEEEECHHHHhhHHHH-----hhccCchhhh--HHHHHHHHHHHHHhhhHHHHHH
Confidence 2456665 5676 3 3777 666788888766431 0111222221 223334455555443 2456
Q ss_pred HHHHHHHHHHHHHHcccCCCceeee-eceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec---CCEEEEeCCcc
Q psy8199 553 RISQDMKKITKALTSLITHPKIINF-RQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI---GNTVYLMPPYI 628 (965)
Q Consensus 553 ~~~~~~~~l~~~L~~l~~~~~i~~v-~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~---~~~lR~~p~~~ 628 (965)
+.+++.+++.+.|+++ +++..+ +..+.++.+.+. ..+.+.|.++||.+.++ .+++|+++++.
T Consensus 268 ~~~~~~~~l~~~L~~~---~g~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~gi~v~~g~~~~~~iRi~~~~~ 333 (356)
T 1v72_A 268 KANAAAQRLAQGLEGL---GGVEVLGGTEANILFCRLD-----------SAMIDALLKAGFGFYHDRWGPNVVRFVTSFA 333 (356)
T ss_dssp HHHHHHHHHHHHHTTC---TTEEEESCCCSSEEEEEEC-----------HHHHHHHHHTTCBCBCSSSSTTEEEEECCTT
T ss_pred HHHHHHHHHHHHHhhC---CCcEEccCCCccEEEEEcC-----------HHHHHHHHhcCeEEeccccCCCeEEEEecCC
Confidence 6677778888777654 455432 334555555542 15777888999999864 47999999999
Q ss_pred cCHHHHHHHHHhhhccccc
Q psy8199 629 LNKNEIQHMTSAIFQTFNE 647 (965)
Q Consensus 629 ~t~~~i~~~~~~l~~~~~~ 647 (965)
+++++++++++++.+.+.+
T Consensus 334 ~~~~~i~~~~~~l~~~l~~ 352 (356)
T 1v72_A 334 TTAEDVDHLLNQVRLAADR 352 (356)
T ss_dssp CCHHHHHHHHHHHHHTC--
T ss_pred CCHHHHHHHHHHHHHHHHh
Confidence 9999999999999876543
|
| >3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=99.86 E-value=6.8e-21 Score=219.94 Aligned_cols=307 Identities=11% Similarity=0.032 Sum_probs=196.7
Q ss_pred cHHHHHHHHHHHhhc--CCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCce--------------EEEEE-cCCccC
Q psy8199 296 HKPVIKLSEKLSSLT--QYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKK--------------KFICL-QNSYHG 358 (965)
Q Consensus 296 ~~~~~~la~~l~~~~--~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~--------------~vi~~-~~~yHg 358 (965)
.+.+..+++.+.+.. +.+.++|+||+||++|++.+++.+.. +++ +||+. +++|++
T Consensus 86 ~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~t~al~~~~~~l~~--------~gd~~~~~~~~~~g~~~~vi~~~~p~~~~ 157 (444)
T 3if2_A 86 SAFIDALVGFFNRHYDWNLTSENIALTNGSQNAFFYLFNLFGG--------AFVNEHSQDKESKSVDKSILLPLTPEYIG 157 (444)
T ss_dssp HHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHSSE--------EEECC-------CEEEEEEEESSSSCCGG
T ss_pred HHHHHHHHHHHHhhcCCCCCHHHEEEecCcHHHHHHHHHHHhC--------CCccccccccccccccceEEEeCCCCccc
Confidence 344555665555443 34567999999999999999987742 222 56664 889998
Q ss_pred CccccccccCCcCccchhcccCCCeeEecCCCCC----CCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccC
Q psy8199 359 ETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSR----NINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCA 434 (965)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~ 434 (965)
+......... +......+..++..... .. .|+++|++++++..+++++|++.. ++|+
T Consensus 158 ~~~~~~~~~~-------~~~~~~~~~~~~~~~~~g~~~~~-----------~d~~~l~~~l~~~~~~~~~v~i~~-p~np 218 (444)
T 3if2_A 158 YSDVHVEGQH-------FAAVLPHIDEVTHDGEEGFFKYR-----------VDFEALENLPALKEGRIGAICCSR-PTNP 218 (444)
T ss_dssp GTTCCSSSCC-------EEECCCEEEEEEETTEEEEEEEE-----------CCHHHHHTCHHHHTTCEEEEEEES-SCTT
T ss_pred hhhcccccch-------hhccCceEEecccccccCccccC-----------CCHHHHHHHHHhcCCCceEEEeCC-CCCC
Confidence 8543321110 11111122233321100 01 267888887543234566666665 5889
Q ss_pred CCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccccccc-c--cccCCCcceeeeccccCCCcccceeeeecHHHHH
Q psy8199 435 GGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFA-C--EHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYN 511 (965)
Q Consensus 435 ~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~-~--~~~~~~pDivt~sK~l~gG~~pig~v~~~~~i~~ 511 (965)
+|.+. +.+.+++|.++|++||+++|+||+|..+ ..+..+. . ...+...++.+|||.+..| +++|++++++++++
T Consensus 219 tG~~~-~~~~l~~i~~~a~~~~~~li~De~~~~~-~~~~~~~~~~~~~~~~~i~~~S~sK~~~~G-~r~G~~~~~~~l~~ 295 (444)
T 3if2_A 219 TGNVL-TDEEMAHLAEIAKRYDIPLIIDNAYGMP-FPNIIYSDAHLNWDNNTILCFSLSKIGLPG-MRTGIIVADAKVIE 295 (444)
T ss_dssp TCCCC-CHHHHHHHHHHHHHTTCCEEEECTTCTT-TTCCBCSCCCCCCCTTEEEEEESTTTTCGG-GCCEEEECCHHHHH
T ss_pred CCCcC-CHHHHHHHHHHHHHCCCEEEEECCCCCc-ccccccccccccCCCCEEEEechhhccCCC-CceEEEEECHHHHH
Confidence 99866 6777999999999999999999999643 1111111 0 1123334456899975556 89999999999998
Q ss_pred hhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc-----ccHHHHHHHHHHHHHHHHHcc-cCCCceee-eeceeEEE
Q psy8199 512 SIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK-----DNILQRISQDMKKITKALTSL-ITHPKIIN-FRQKGMIW 584 (965)
Q Consensus 512 ~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~-----~~~~~~~~~~~~~l~~~L~~l-~~~~~i~~-v~g~G~~~ 584 (965)
.+.. ..+..+++.++++++++.+.|+.... +.+.+.++++.+.+.+.|.+. ... ++.. .+..|+++
T Consensus 296 ~~~~------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~g~~~ 368 (444)
T 3if2_A 296 AVSA------MNAVVNLAPTRFGAAIATPLVANDRIKQLSDNEIKPFYQKQATLAVKLLKQALGDY-PLMIHKPEGAIFL 368 (444)
T ss_dssp HHHH------HHHHHHSSCCCHHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHHHHHHHHHSSSS-SEEEECCCBSSEE
T ss_pred HHHH------HHHhccCCCChHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcccC-CceEecCCccEEE
Confidence 8865 33456678899999999888864221 124455666667777777653 222 2332 23457777
Q ss_pred EEEEeecCccchhhHHHHHHHHHHHcCcEEeecC---------------CEEEEeCCcccCHHHHHHHHHhhhcccc
Q psy8199 585 AFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG---------------NTVYLMPPYILNKNEIQHMTSAIFQTFN 646 (965)
Q Consensus 585 ~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~---------------~~lR~~p~~~~t~~~i~~~~~~l~~~~~ 646 (965)
++.+. ..+. ....+.+.|.++||.+.|+. +++||+++. ++++++++++++.+.+.
T Consensus 369 ~~~~~-~~~~----~~~~l~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~~iRis~~~--~~e~i~~~l~~l~~~~~ 438 (444)
T 3if2_A 369 WLWFK-DLPI----STLDLYERLKAKGTLIVPSEYFFPGVDVSDYQHAHECIRMSIAA--DEQTLIDGIKVIGEVVR 438 (444)
T ss_dssp EEEET-TCSS----CHHHHHHHHHHTTEECEEGGGSCTTCCCTTCSGGGSEEEEESSS--CHHHHHHHHHHHHHHHH
T ss_pred EEEcC-CCCC----CHHHHHHHHHHCCeEEecchhhcCCCCCcccccCCCeEEEEEeC--CHHHHHHHHHHHHHHHH
Confidence 77774 1111 13467788899999998731 479999876 99999999999876543
|
| >2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=9.7e-22 Score=228.60 Aligned_cols=357 Identities=12% Similarity=0.081 Sum_probs=208.3
Q ss_pred CCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHH
Q psy8199 252 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVAL 331 (965)
Q Consensus 252 dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al 331 (965)
.|+.|||+.+++++ |+|.+|+.+++.... ......+...+|+++++++++ .++++|++||++|++.|+
T Consensus 39 ~~~~ylD~~~~~~~-------~~v~~a~~~~l~~~~---~~y~~~~~~~~l~~~la~~~~--~~~v~~t~~gt~A~~~al 106 (467)
T 2oqx_A 39 SEDVFIDLLTDSGT-------GAVTQSMQAAMMRGD---EAYSGSRSYYALAESVKNIFG--YQYTIPTHQGRGAEQIYI 106 (467)
T ss_dssp GGGCSEECSCCSSC-------SCCCHHHHHHTTSCC---CCSSSCHHHHHHHHHHHHHHC--CSEEEEEC--CCSHHHHH
T ss_pred CCCeeEecccCCCc-------HHHHHHHHHHhccCc---ceeccCchhHHHHHHHHHHhC--cCcEEEcCCcHHHHHHHH
Confidence 47789999887653 889999988876431 122345667899999999984 589999999999999999
Q ss_pred HHHHHH-HHhcCCCCceEEEEEcCCccCCccccccc-cCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHH
Q psy8199 332 KMSFHY-WYNKGFLNKKKFICLQNSYHGETLGALAV-TNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIF 409 (965)
Q Consensus 332 ~~a~~~-~~~~g~~~~~~vi~~~~~yHg~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 409 (965)
++++.. +..+|.+++++|++. .||+.+...... .+..... .....+.+.....+. ....|++
T Consensus 107 ~~~~~~~~~~~G~~~~d~Ii~~--~~h~~t~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~------~~~~d~~ 170 (467)
T 2oqx_A 107 PVLIKKREQEKGLDRSKMVAFS--NYFFDTTQGHSQINGCTVRN--------VYIKEAFDTGVRYDF------KGNFDLE 170 (467)
T ss_dssp HHHHHHHHHHHCCCTTTCEEEE--SSCCHHHHHHHHHTTCEEEE--------CBCTTTTCTTSCCTT------TTCBCHH
T ss_pred HHHhccccccCCCCccceEEec--ccccccchhhhhccCcceee--------ccccccccCCCCCCc------cCCcCHH
Confidence 998763 111132211556654 588764332221 1110000 000000000000000 0002789
Q ss_pred HHHHHHHhCC-CcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccC----------CCcccc---cc
Q psy8199 410 DLEILLKKNH-NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVG----------CGRTGK---FF 475 (965)
Q Consensus 410 ~le~~l~~~~-~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg----------~gr~G~---~~ 475 (965)
+|++++++.. +++++|+++| ++|++|..+++.+++++|+++|++||++||+|+++.. .+..|. .+
T Consensus 171 ~Le~~i~~~~~~~~~~vi~~~-~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D~a~~~e~~~~~~~~~~~~~g~~~~~~ 249 (467)
T 2oqx_A 171 GLERGIEEVGPNNVPYIVATI-TSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQI 249 (467)
T ss_dssp HHHHHHHHHCGGGCCCEEEES-SBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHH
T ss_pred HHHHHHHhcCCCceeEEEEec-cccCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhhhhhhhcccccccccCccHHHH
Confidence 9999997532 4688999999 8888766677899999999999999999999965532 122232 11
Q ss_pred cccccCCCccee--eeccccCCCccccee-eeecHH-HHHhhhccCCcc-cccccCCCCCCHHHHHHHH-HHHHHHhccc
Q psy8199 476 ACEHAEIWPDFL--CLSKGITGGYLPLSL-VMTTDK-IYNSIYYKNNIN-IFLHSHSYSGNPLACCAAL-ATLEIFNKDN 549 (965)
Q Consensus 476 ~~~~~~~~pDiv--t~sK~l~gG~~pig~-v~~~~~-i~~~~~~~~~~~-~~~~~~t~~~~~~~~aaa~-a~L~~~~~~~ 549 (965)
..+.+ ..+|++ +++|+++ .|+|+ ++++++ +++.+..-.... ......++++.+..+.+++ ..|+...+++
T Consensus 250 ~~~~~-~~~d~~~~s~sK~~g---~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~l~~~~~~~ 325 (467)
T 2oqx_A 250 TRETY-KYADMLAMSAKKDAM---VPMGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLD 325 (467)
T ss_dssp HHHHG-GGCSEEEEESSSTTC---CSSCEEEEECSGGGHHHHHHHHHHHHHTTSSCCCCCCCHHHHHHHHHHHHHTTCHH
T ss_pred hhhhh-ccCCeEEEecccccC---CCCceEEEecChhHHHHHHHHHHhhhccCCcccccchhhhHHHHHHHhhHhhhhHH
Confidence 10000 114554 5678774 36554 556656 443332100000 0001123333333333233 2233222233
Q ss_pred HHHHHHHHHHHHHHHHHcccCCCceeeeeceeEEEEEEEeec--CccchhhH-HHHHHHHH-HHcCcEEeecC-------
Q psy8199 550 ILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIE--DPEQIETF-SKKFFVAA-LKNELLLRPIG------- 618 (965)
Q Consensus 550 ~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~G~~~~i~~~~~--~~~~~~~~-~~~~~~~l-~~~Gi~~~~~~------- 618 (965)
..++..++++++.+.|+++ ..+.+ +..|.++.+.+. . .......+ ...+.+.| .++||.+.|.+
T Consensus 326 ~~~~~~~~~~~l~~~L~~~-~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~gv~~~~~~~~~~~~~ 400 (467)
T 2oqx_A 326 WLAYRIAQVQYLVDGLEEI-GVVCQ---QAGGHAAFVDAG-KLLPHIPADQFPAQALACELYKVAGIRAVEIGSFLLGRD 400 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHT-TCCEE---EECSSCEEEEHH-HHSTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBC
T ss_pred HHHHHHHHHHHHHHHHHHC-CCeee---cCCceEEEEech-hhcccCCcccccHHHHHHHHHHhcCceeccccccccccc
Confidence 5666778889999999876 33333 233455555542 1 11111223 45677888 89999987732
Q ss_pred -----------CEEEEeCCcc-cCHHHHHHHHHhhhcccc
Q psy8199 619 -----------NTVYLMPPYI-LNKNEIQHMTSAIFQTFN 646 (965)
Q Consensus 619 -----------~~lR~~p~~~-~t~~~i~~~~~~l~~~~~ 646 (965)
+++||+++.. +++++++++++++.+.+.
T Consensus 401 ~~~g~~~~~~~~~iRl~~~~~~~t~e~i~~~~~~l~~~l~ 440 (467)
T 2oqx_A 401 PKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKE 440 (467)
T ss_dssp TTTCSBCCCSCCEEEECCCTTTSCHHHHHHHHHHHHHHHH
T ss_pred ccccccccCccCeEEEEecCCCCCHHHHHHHHHHHHHHHh
Confidence 6899999999 999999999999876543
|
| >3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.6e-21 Score=219.49 Aligned_cols=319 Identities=13% Similarity=0.125 Sum_probs=216.7
Q ss_pred CCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCC-eEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEE
Q psy8199 271 SNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLG-HCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKF 349 (965)
Q Consensus 271 ~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~-~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~v 349 (965)
.+|++.+|+.+++.. +. .....+...++++++++.++...+ .+++++||++|++.+++.+. .++++|
T Consensus 34 ~~~~v~~a~~~~~~~--~~--~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~gg~~al~~~~~~~~--------~~gd~v 101 (393)
T 3kgw_A 34 LAPRVLAAGSLRMIG--HM--QKEMLQIMEEIKQGIQYVFQTRNPLTLVVSGSGHCAMETALFNLL--------EPGDSF 101 (393)
T ss_dssp CCHHHHHHTTCCCCC--TT--SHHHHHHHHHHHHHHHHHHTCCCSEEEEESCCTTTHHHHHHHHHC--------CTTCEE
T ss_pred CCHHHHHHhcccccC--cc--cHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCcHHHHHHHHHhcC--------CCCCEE
Confidence 578898888764322 11 111245667889999999875544 59999999999999999773 367889
Q ss_pred EEEcCCccCCcccc-ccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEc
Q psy8199 350 ICLQNSYHGETLGA-LAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIE 428 (965)
Q Consensus 350 i~~~~~yHg~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~e 428 (965)
++..++|||..... ....| ..+..+|.+.... .|+++|++++++. ++++|+++
T Consensus 102 l~~~~~~~~~~~~~~~~~~g------------~~~~~~~~~~~~~------------~d~~~l~~~i~~~--~~~~v~~~ 155 (393)
T 3kgw_A 102 LTGTNGIWGMRAAEIADRIG------------ARVHQMIKKPGEH------------YTLQEVEEGLAQH--KPVLLFLV 155 (393)
T ss_dssp EEEESSHHHHHHHHHHHHTT------------CEEEEEECCTTCC------------CCHHHHHHHHHHH--CCSEEEEE
T ss_pred EEEeCCchhHHHHHHHHHcC------------CceEEEeCCCCCC------------CCHHHHHHHHhhC--CCcEEEEe
Confidence 99988887642111 11111 1234444432111 3788999998752 45677888
Q ss_pred cccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcceeeec--cccCCCcccceeeeec
Q psy8199 429 PLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS--KGITGGYLPLSLVMTT 506 (965)
Q Consensus 429 p~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~s--K~l~gG~~pig~v~~~ 506 (965)
+ ++|++|.+.+ +++|+++|++||+++|+||+|+ +| +..+..+.+ .+|++++| |+++|+ .++|+++++
T Consensus 156 ~-~~nptG~~~~----l~~i~~l~~~~~~~li~De~~~-~g--~~~~~~~~~--~~d~~~~s~sK~~~~~-~g~g~~~~~ 224 (393)
T 3kgw_A 156 H-GESSTGVVQP----LDGFGELCHRYQCLLLVDSVAS-LG--GVPIYMDQQ--GIDIMYSSSQKVLNAP-PGISLISFN 224 (393)
T ss_dssp S-EETTTTEECC----CTTHHHHHHHTTCEEEEECTTT-TT--TSCCCTTTT--TCCEEEEESSSTTCCC-SSCEEEEEC
T ss_pred c-cCCcchhhcc----HHHHHHHHHHcCCEEEEECCcc-cc--Ccccchhhc--CCCEEEecCcccccCC-CceeEEEEC
Confidence 8 7999998876 8899999999999999999997 43 222333333 35777655 999776 579999999
Q ss_pred HHHHHhhhccC-Ccccc----------------cccCCCCCCHHHHHHHHHHHHHHhc---ccHHHHHHHHHHHHHHHHH
Q psy8199 507 DKIYNSIYYKN-NINIF----------------LHSHSYSGNPLACCAALATLEIFNK---DNILQRISQDMKKITKALT 566 (965)
Q Consensus 507 ~~i~~~~~~~~-~~~~~----------------~~~~t~~~~~~~~aaa~a~L~~~~~---~~~~~~~~~~~~~l~~~L~ 566 (965)
+++++.+.... ....+ ....+++.++.+++++.++++.+.+ ++..++++++++++.+.|+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~ 304 (393)
T 3kgw_A 225 DKAKYKVYSRKTKPVSFYTDITYLAKLWGCEGETRVIHHTTPVTSLYCLRESLALIAEQGLENCWRRHREATAHLHKHLQ 304 (393)
T ss_dssp HHHHHHHHTCSSCCSCSTTCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCCCceeecHHHHHHhhhhccccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 99988875411 00000 0112345688888888899987655 4567888889999999998
Q ss_pred cccCCCce-ee-eeceeEEEEEEEeecCccchhhHHHHHHHHHHHc-CcEEeec-----CCEEEEeC-CcccCHHHHHHH
Q psy8199 567 SLITHPKI-IN-FRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKN-ELLLRPI-----GNTVYLMP-PYILNKNEIQHM 637 (965)
Q Consensus 567 ~l~~~~~i-~~-v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~-Gi~~~~~-----~~~lR~~p-~~~~t~~~i~~~ 637 (965)
++ ....+ .. ....+.+..+.+. ++ ....++.+.|.++ ||++.++ ++++|+++ ++..++++++++
T Consensus 305 ~~-g~~~~~~~~~~~~~~~~~~~~~--~~----~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~i~~~ 377 (393)
T 3kgw_A 305 EM-GLKFFVKDPEIRLPTITTVTVP--AG----YNWRDIVSYVLDHFSIEISGGLGPTEERVLRIGLLGYNATTENVDRV 377 (393)
T ss_dssp HT-TCCBSSSSGGGBCSSEEEEECC--TT----BCHHHHHHHHHHHHCEECBCCCGGGTTTEEEEECCGGGCCHHHHHHH
T ss_pred Hc-CCeeccCChhhcCCeEEEEeCC--CC----CCHHHHHHHHHHhCCEEEeCCcccCCCCEEEEEecccCCCHHHHHHH
Confidence 76 22111 11 1222455556653 11 1134677888887 9999873 37999998 777899999999
Q ss_pred HHhhhccc
Q psy8199 638 TSAIFQTF 645 (965)
Q Consensus 638 ~~~l~~~~ 645 (965)
++++.+.+
T Consensus 378 ~~~l~~~l 385 (393)
T 3kgw_A 378 AEALREAL 385 (393)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99987654
|
| >3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.86 E-value=5e-21 Score=215.87 Aligned_cols=316 Identities=9% Similarity=0.068 Sum_probs=205.6
Q ss_pred CCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCC-e-EEEcCChhHHHHHHHHHHHHHHHhcCCCCceE
Q psy8199 271 SNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLG-H-CFYGSDGASAVEVALKMSFHYWYNKGFLNKKK 348 (965)
Q Consensus 271 ~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~-~-v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~ 348 (965)
.+|+|++|+.+++.. +. .....+...++++++++.++...+ + +++++||++|++.+++.+. .++++
T Consensus 30 ~~~~v~~a~~~~~~~--~~--~~~~~~~~~~~~~~la~~~g~~~~~~~i~~~~ggt~al~~~~~~~~--------~~gd~ 97 (376)
T 3f0h_A 30 SSEEVRAIGAEQVPY--FR--TTEFSSTMLENEKFMLEYAKAPEGSKAVFMTCSSTGSMEAVVMNCF--------TKKDK 97 (376)
T ss_dssp CCHHHHHHHTSCCCC--CS--SHHHHHHHHHHHHHHHHHHTCCTTCEEEEESSCHHHHHHHHHHHHC--------CTTCC
T ss_pred CcHHHHHHhcCCCCC--CC--CHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCChhHHHHHHHHhcc--------CCCCe
Confidence 478888888765532 11 111235667888999998875432 4 4559999999999998774 25688
Q ss_pred EEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEc
Q psy8199 349 FICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIE 428 (965)
Q Consensus 349 vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~e 428 (965)
|++.+++||+........ .....+..++.+.... .|+++|++++. +++++|+++
T Consensus 98 vi~~~~~~~~~~~~~~~~-----------~~g~~~~~v~~~~~~~------------~d~~~l~~~~~---~~~~~v~~~ 151 (376)
T 3f0h_A 98 VLVIDGGSFGHRFVQLCE-----------IHEIPYVALKLEHGKK------------LTKEKLYEYDN---QNFTGLLVN 151 (376)
T ss_dssp EEEEESSHHHHHHHHHHH-----------HTTCCEEEEECCTTCC------------CCHHHHHTTTT---SCCCEEEEE
T ss_pred EEEEeCChhhHHHHHHHH-----------HcCCceEEEeCCCCCC------------CCHHHHHHhhc---cCceEEEEe
Confidence 999998888853221110 0112344444432211 26778877653 456778888
Q ss_pred cccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcceeeeccccCCCcccceeeeecHH
Q psy8199 429 PLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDK 508 (965)
Q Consensus 429 p~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~sK~l~gG~~pig~v~~~~~ 508 (965)
+ ++|++|.+.+ +++|+++|++||+++|+||+|+++++. +..+.+++...+.+++|+++++ .++|+++++++
T Consensus 152 ~-~~nptG~~~~----l~~i~~l~~~~~~~li~D~~~~~~~~~---~~~~~~~~d~~~~s~~K~l~~~-~G~g~~~~~~~ 222 (376)
T 3f0h_A 152 V-DETSTAVLYD----TMMIGEFCKKNNMFFVCDCVSAFLADP---FNMNECGADVMITGSQKVLACP-PGISVIVLAPR 222 (376)
T ss_dssp S-EETTTTEECC----HHHHHHHHHHTTCEEEEECTTTTTTSC---CCHHHHTCSEEEEETTTTTCCC-SSCEEEEECHH
T ss_pred c-ccCCcceecC----HHHHHHHHHHcCCEEEEEcCccccCcc---ccccccCccEEEecCcccccCC-CceEEEEECHH
Confidence 7 7999999887 999999999999999999999865432 3344445433344567999865 57899999999
Q ss_pred HHHhhhccCCcccc-----------c-ccCCCCCCHHHHHHHHHHHHHHhcc----cHHHHHHHHHHHHHHHHHcccCCC
Q psy8199 509 IYNSIYYKNNINIF-----------L-HSHSYSGNPLACCAALATLEIFNKD----NILQRISQDMKKITKALTSLITHP 572 (965)
Q Consensus 509 i~~~~~~~~~~~~~-----------~-~~~t~~~~~~~~aaa~a~L~~~~~~----~~~~~~~~~~~~l~~~L~~l~~~~ 572 (965)
+++.+..... ..+ . .+..++.+..+++++.++++.+.+. ...++.+++.+++.+.|+++
T Consensus 223 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---- 297 (376)
T 3f0h_A 223 GVERVEKSKV-RTMYFDLKDALKNQERGQTPFTPAVGILLQINERLKEIKKHGGADAEVARIASQAADFRAKIKDL---- 297 (376)
T ss_dssp HHHHHHTCCC-CCSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTS----
T ss_pred HHHHhhcCCC-CceeecHHHHHhhcccCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHc----
Confidence 9887754110 010 0 1223445555667788888877654 24555556666666666543
Q ss_pred ceeeee--ceeEEEEEEEeecCccchhhHHHHHHHHHHHc-CcEEeec-----CCEEEEeCCcccCHHHHHHHHHhhhcc
Q psy8199 573 KIINFR--QKGMIWAFDVIIEDPEQIETFSKKFFVAALKN-ELLLRPI-----GNTVYLMPPYILNKNEIQHMTSAIFQT 644 (965)
Q Consensus 573 ~i~~v~--g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~-Gi~~~~~-----~~~lR~~p~~~~t~~~i~~~~~~l~~~ 644 (965)
++.... ..+.++.+... . .....+.+.|.++ ||.++++ ++++|++++..+++++++++++++.+.
T Consensus 298 ~~~~~~~~~~~~~~~~~~~--~-----~~~~~l~~~l~~~~gi~v~~g~~~~~~~~lRis~~~~~t~e~i~~~~~~l~~~ 370 (376)
T 3f0h_A 298 PFELVSESPANGVTSVHPT--T-----ANAYDIFLKLKDEYGIWICPNGGEMKDTIFRVGHIGALTHEDNTTLVNAFKDL 370 (376)
T ss_dssp SEEECCSSBBTTEEEEEES--S-----SCHHHHHHHHHHHSSEECEECCGGGTTTCEEEECCSSCCHHHHHHHHHHHHHH
T ss_pred CCccCccccCceEEEEeCC--C-----CCHHHHHHHHHHhCCEEEecCccccCCCEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 222211 12233333321 1 1144677888888 9999874 268999999999999999999998764
Q ss_pred c
Q psy8199 645 F 645 (965)
Q Consensus 645 ~ 645 (965)
+
T Consensus 371 l 371 (376)
T 3f0h_A 371 Q 371 (376)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=5.7e-21 Score=217.02 Aligned_cols=309 Identities=12% Similarity=0.083 Sum_probs=205.6
Q ss_pred CHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEE
Q psy8199 272 NSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFIC 351 (965)
Q Consensus 272 ~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~ 351 (965)
.+++.+++..+......+....+.++...+++++++++++ .+++++++||++|++.+++.+. .++++|++
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g--~~~~i~~~sG~~a~~~~l~~~~--------~~gd~vi~ 108 (398)
T 2rfv_A 39 FDSAEQGAARFALEESGYIYTRLGNPTTDALEKKLAVLER--GEAGLATASGISAITTTLLTLC--------QQGDHIVS 108 (398)
T ss_dssp CSSHHHHHHHC-----CCSBTTTCCHHHHHHHHHHHHHHT--CSEEEEESSHHHHHHHHHHHHC--------CTTCEEEE
T ss_pred cCCHHHHHHhhcCCCCCCceeCCCChHHHHHHHHHHHHhC--CCcEEEECCHHHHHHHHHHHHh--------CCCCEEEE
Confidence 4555555542222222333445678889999999999996 3488888899999999999773 25688999
Q ss_pred EcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEcccc
Q psy8199 352 LQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLV 431 (965)
Q Consensus 352 ~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v 431 (965)
.++.||+......... ......+..+|. .|+++|+++++ +++++|++++ +
T Consensus 109 ~~~~~~~~~~~~~~~~---------~~~g~~~~~v~~-----------------~d~~~l~~~i~---~~~~~v~~~~-~ 158 (398)
T 2rfv_A 109 ASAIYGCTHAFLSHSM---------PKFGINVRFVDA-----------------AKPEEIRAAMR---PETKVVYIET-P 158 (398)
T ss_dssp ESSSCHHHHHHHHTHH---------HHTTCEEEEECT-----------------TSHHHHHHHCC---TTEEEEEEES-S
T ss_pred cCCCcccHHHHHHHHH---------HHcCCEEEEeCC-----------------CCHHHHHHhcC---CCCeEEEEEC-C
Confidence 9999988643221100 011112344443 26788888875 4678999999 8
Q ss_pred ccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcce--eeeccccCCCcccc-eeeeecHH
Q psy8199 432 QCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDF--LCLSKGITGGYLPL-SLVMTTDK 508 (965)
Q Consensus 432 ~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDi--vt~sK~l~gG~~pi-g~v~~~~~ 508 (965)
+|++|.+.+ +++|.++|++||+++|+||+|..+ ..+... .++ +|+ .+++|.++++++|+ |+++++++
T Consensus 159 ~nptG~~~~----l~~i~~l~~~~~~~li~De~~~~~-~~~~~~---~~~--~di~~~s~sK~~~~~g~~~~G~~~~~~~ 228 (398)
T 2rfv_A 159 ANPTLSLVD----IETVAGIAHQQGALLVVDNTFMSP-YCQQPL---QLG--ADIVVHSVTKYINGHGDVIGGIIVGKQE 228 (398)
T ss_dssp BTTTTBCCC----HHHHHHHHHHTTCEEEEECTTTCT-TTCCGG---GGT--CSEEEEETTTTTTCSSCCCCEEEEECHH
T ss_pred CCCCCcccC----HHHHHHHHHHcCCEEEEECCCccc-ccCCch---hhC--CcEEEEeCcccccCCCCceEEEEEECHH
Confidence 999999886 999999999999999999999733 222221 223 566 47899997754788 99999998
Q ss_pred HHH-hhhccCCcccccccC-CCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcc-----------cCCCcee
Q psy8199 509 IYN-SIYYKNNINIFLHSH-SYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSL-----------ITHPKII 575 (965)
Q Consensus 509 i~~-~~~~~~~~~~~~~~~-t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l-----------~~~~~i~ 575 (965)
+++ .+.. +.+.. +.+.++++++++.++|+.+. ...++..++.+++.+.|++. ..+|++.
T Consensus 229 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~ 300 (398)
T 2rfv_A 229 FIDQARFV------GLKDITGGCMSPFNAWLTLRGVKTLG--IRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYE 300 (398)
T ss_dssp HHHHHHHT------HHHHTTCCCCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHH
T ss_pred HHHHHHHH------HHHhCCCCCCCHHHHHHHHhhhhhHH--HHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHH
Confidence 876 4432 23334 56788999999999996542 23455666677777777642 1223322
Q ss_pred ee----eceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec----------------------------CCEEEE
Q psy8199 576 NF----RQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI----------------------------GNTVYL 623 (965)
Q Consensus 576 ~v----~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~----------------------------~~~lR~ 623 (965)
.. ++.|.++.+++. +. ......+.+.+...|+.+.++ .+.+||
T Consensus 301 ~~~~~~~~~g~~~~~~~~--~~---~~~~~~l~~~~~~~~i~~~~G~~~~li~~~~~~~~~~~~~~~~~~~g~~~~~iRl 375 (398)
T 2rfv_A 301 LGQRQMSLPGGIISFEIA--GG---LEAGRRMINSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRL 375 (398)
T ss_dssp HHHHHCSSCCSEEEEEET--TH---HHHHHHHHTTCSSSEECSCCSSSSCEEECHHHHTSSSSCHHHHHHTTCCTTEEEE
T ss_pred HHHhhCCCCceEEEEEEc--CC---HHHHHHHHHhCCcceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEE
Confidence 11 356889998874 10 112333444444445544322 379999
Q ss_pred eCCcccCHHHHHHHHHhhhc
Q psy8199 624 MPPYILNKNEIQHMTSAIFQ 643 (965)
Q Consensus 624 ~p~~~~t~~~i~~~~~~l~~ 643 (965)
+++...++++++.+.+++.+
T Consensus 376 s~~~~~~~~~i~~l~~al~~ 395 (398)
T 2rfv_A 376 SVGLEDPEDIINDLEHAIRK 395 (398)
T ss_dssp ECCSSCHHHHHHHHHHHHHH
T ss_pred EecCCCHHHHHHHHHHHHHh
Confidence 99999999999998887754
|
| >2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.86 E-value=5.8e-21 Score=217.86 Aligned_cols=329 Identities=11% Similarity=0.049 Sum_probs=214.2
Q ss_pred cccccccccchhccCCCCCHHHHHHHHHHHhh-c-cccccCCC--CcH---HHHHHH-HHHHhhcCCCCCeEEEcCChhH
Q psy8199 254 KRYLDAISSWWVNLFGHSNSYINKALKNQLNK-L-EHVMLSNL--THK---PVIKLS-EKLSSLTQYKLGHCFYGSDGAS 325 (965)
Q Consensus 254 ~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~-~-~~~~~~~~--~~~---~~~~la-~~l~~~~~~~~~~v~~~~sGse 325 (965)
++|+|+.++... + +|+|.+|+.+++.+ . ..+....+ ..+ ..++++ +++++.++.. ...++++||++
T Consensus 23 ~~~i~~~~~~~~--~---~~~v~~a~~~~~~~~~~~~y~~~~~~~g~~~~~~~e~~ar~~la~~~g~~-~~~i~~~sGt~ 96 (407)
T 2dkj_A 23 REGLELIASENF--V---SKQVREAVGSVLTNKYAEGYPGARYYGGCEVIDRVESLAIERAKALFGAA-WANVQPHSGSQ 96 (407)
T ss_dssp HTSEECCTTCCC--C---CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCS-EEECCCSSHHH
T ss_pred hcceeeccCCCC--C---CHHHHHHHHhhhhcCcccCCCcccccCCchHHHHHHHHHHHHHHHHhCCC-cceEEecchHH
Confidence 578999888543 3 89999999998864 2 22211111 122 233333 4788888643 23356677999
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCc--cccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHH
Q psy8199 326 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGET--LGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEI 403 (965)
Q Consensus 326 A~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (965)
|++.+++++. .++++|++.+++|+++. ..++...|.. .....++.......
T Consensus 97 a~~~~~~~~~--------~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~----------~~~~~~~~~~~~~~--------- 149 (407)
T 2dkj_A 97 ANMAVYMALM--------EPGDTLMGMDLAAGGHLTHGSRVNFSGKL----------YKVVSYGVRPDTEL--------- 149 (407)
T ss_dssp HHHHHHHHHC--------CTTCEEEEECGGGTCCGGGTCTTSHHHHH----------SEEEEECCCTTTSS---------
T ss_pred HHHHHHHHhc--------CCCCEEEEecccccCccchHHHHHhcCce----------EEEEecCCCcccCc---------
Confidence 9999999873 35688999999998873 1222221110 01111211100111
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEE-ccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccC-CCcccccccccccC
Q psy8199 404 ARCAIFDLEILLKKNHNKIAAIII-EPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVG-CGRTGKFFACEHAE 481 (965)
Q Consensus 404 ~~~d~~~le~~l~~~~~~~aaii~-ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg-~gr~G~~~~~~~~~ 481 (965)
.|+++|++++++. ++++|++ +| .+ |...+ +++|.++|++||+++|+||+|++ +...|.... ..+
T Consensus 150 --~d~~~l~~~l~~~--~~~~v~~~~p-~~---~~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~--~~~ 215 (407)
T 2dkj_A 150 --IDLEEVRRLALEH--RPKVIVAGAS-AY---PRFWD----FKAFREIADEVGAYLVVDMAHFAGLVAAGLHPN--PLP 215 (407)
T ss_dssp --CCHHHHHHHHHHH--CCSEEEECCS-SC---CSCCC----HHHHHHHHHHHTCEEEEECTTTHHHHHTTCSCC--CTT
T ss_pred --cCHHHHHHHHhhc--CCeEEEEecc-cc---CCCCC----HHHHHHHHHHcCCEEEEEccccccccccCccCC--ccc
Confidence 3688899888642 3455555 67 33 24443 89999999999999999999985 433343221 112
Q ss_pred CCccee--eeccccCCCcccceeeeec-HHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc---ccHHHHHH
Q psy8199 482 IWPDFL--CLSKGITGGYLPLSLVMTT-DKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK---DNILQRIS 555 (965)
Q Consensus 482 ~~pDiv--t~sK~l~gG~~pig~v~~~-~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~---~~~~~~~~ 555 (965)
.+|++ ++||+++|+ ++|+++++ +++++.+... ..++.+.+.++..++++.++|+.+.. ++..++++
T Consensus 216 -~~di~~~s~sK~l~g~--~~G~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~ 287 (407)
T 2dkj_A 216 -YAHVVTSTTHKTLRGP--RGGLILSNDPELGKRIDKL-----IFPGIQGGPLEHVIAGKAVAFFEALQPEFKEYSRLVV 287 (407)
T ss_dssp -TCSEEEEESSGGGCCC--SCEEEEESCHHHHHHHHHH-----HTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHH
T ss_pred -cccEEEEeccccCCCC--CceEEEECCHHHHHHHHhh-----hcccccCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 26887 789999864 67999999 7888877541 11334455677778788888887543 45778888
Q ss_pred HHHHHHHHHHHcccCCCceeee--eceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec-----------CCEEE
Q psy8199 556 QDMKKITKALTSLITHPKIINF--RQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-----------GNTVY 622 (965)
Q Consensus 556 ~~~~~l~~~L~~l~~~~~i~~v--~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-----------~~~lR 622 (965)
++.+++.+.|+++ ++..+ ++.|.++.+.+. ..+ .....+.+.|.++||++.++ .+.+|
T Consensus 288 ~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~iR 358 (407)
T 2dkj_A 288 ENAKRLAEELARR----GYRIVTGGTDNHLFLVDLR-PKG----LTGKEAEERLDAVGITVNKNAIPFDPKPPRVTSGIR 358 (407)
T ss_dssp HHHHHHHHHHHHT----TCEEGGGSCSSSEEEEECG-GGT----CCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEE
T ss_pred HHHHHHHHHHHhC----CceeecCCCCceEEEEECc-ccC----CCHHHHHHHHHHcCceecCCcCccccccccCCCcee
Confidence 8889998888775 23322 356888888774 110 01346778889999999863 35799
Q ss_pred EeCCcc----cCHHHHHHHHHhhhcccc
Q psy8199 623 LMPPYI----LNKNEIQHMTSAIFQTFN 646 (965)
Q Consensus 623 ~~p~~~----~t~~~i~~~~~~l~~~~~ 646 (965)
++++.. +++++++++++++.+.+.
T Consensus 359 is~~~~~~~~~~~~~i~~~~~~l~~~~~ 386 (407)
T 2dkj_A 359 IGTPAITTRGFTPEEMPLVAELIDRALL 386 (407)
T ss_dssp EECHHHHHTTCCGGGHHHHHHHHHHHHH
T ss_pred eecccccccCCCHHHHHHHHHHHHHHHh
Confidence 998763 899999999999876543
|
| >2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.2e-20 Score=216.45 Aligned_cols=348 Identities=14% Similarity=0.112 Sum_probs=212.3
Q ss_pred CCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHH
Q psy8199 252 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVAL 331 (965)
Q Consensus 252 dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al 331 (965)
.|+.|+|+.++.++.++ .+++.+++. .. . ......+...+|++.++++++ .+++++++||++|++.|+
T Consensus 40 ~~~~ylD~~~~~~~~~~---~~~~~~a~~----~~-~--~~y~~~~~~~~l~~~la~~~~--~~~~~~~~~gt~a~~~al 107 (456)
T 2ez2_A 40 SKDIYIDLLTDSGTNAM---SDKQWAGMM----MG-D--EAYAGSENFYHLERTVQELFG--FKHIVPTHQGRGAENLLS 107 (456)
T ss_dssp GGGCSEECSCSSSCCCC---CHHHHHHHT----TC-C--CCSSSCHHHHHHHHHHHHHHC--CSEEEEESSHHHHHHHHH
T ss_pred cccceeeeccccCCccC---CHHHHHHhh----cc-h--hhcccChhHHHHHHHHHHHhC--CCcEEEeCCcHHHHHHHH
Confidence 57789999877554322 466666654 21 1 112246678899999999984 569999999999999999
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHH-HHHHHH
Q psy8199 332 KMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIA-RCAIFD 410 (965)
Q Consensus 332 ~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~~ 410 (965)
+.+.. +++ ++.+++||+.+..+....|.. ...++...... + .+...+. ..|+++
T Consensus 108 ~~l~~--------~gd--i~~~~~~~~~~~~~~~~~G~~------------~~~v~~~~~~~-~--~~~~~~~~~~d~~~ 162 (456)
T 2ez2_A 108 QLAIK--------PGQ--YVAGNMYFTTTRYHQEKNGAV------------FVDIVRDEAHD-A--GLNIAFKGDIDLKK 162 (456)
T ss_dssp HHHCC--------TTC--EEEESSCCHHHHHHHHHTTCE------------EEECBCGGGGC-T--TCCCSCTTCBCHHH
T ss_pred HHhCC--------CCC--EeccccccchhHHHHHHcCCE------------EEEeccccccc-c--cccccccCCCCHHH
Confidence 87732 233 788899988755444443311 12222210000 0 0000000 026889
Q ss_pred HHHHHHhCC-CcEEEEEEcccccc-CCCcccCChHHHHHHHHHHHhcCCeEEEeccccC----------CCccccccc--
Q psy8199 411 LEILLKKNH-NKIAAIIIEPLVQC-AGGMIMYDSIYLKLVREICNNYNIHLIADEIAVG----------CGRTGKFFA-- 476 (965)
Q Consensus 411 le~~l~~~~-~~~aaii~ep~v~~-~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg----------~gr~G~~~~-- 476 (965)
|++++.+.. ..+++|++++ ++| ++|. ..+.+++++|.++|++||+++|+||+|+. +++.|..+.
T Consensus 163 l~~~i~~~t~~~~~~v~l~~-p~n~ptG~-~~~~~~l~~i~~la~~~~i~li~De~~~~g~~~~~~~~~~~~~g~~~~~~ 240 (456)
T 2ez2_A 163 LQKLIDEKGAENIAYICLAV-TVNLAGGQ-PVSMANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEI 240 (456)
T ss_dssp HHHHHHHHCGGGEEEEEEES-SBTTTTSB-CCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHH
T ss_pred HHHHHHhccccceeEEEEec-cCCCCCCc-cCCHHHHHHHHHHHHHcCCeEEEEccccccccccccccccccCCcchhhh
Confidence 999887543 3468888885 455 7885 55889999999999999999999999984 334454221
Q ss_pred ccccCCCcceeeec-cccCCCcccceeeee-cHHHHHhhhccCCcccccccCCCCC-CHHHHHH-HHHHHHHHhcccHHH
Q psy8199 477 CEHAEIWPDFLCLS-KGITGGYLPLSLVMT-TDKIYNSIYYKNNINIFLHSHSYSG-NPLACCA-ALATLEIFNKDNILQ 552 (965)
Q Consensus 477 ~~~~~~~pDivt~s-K~l~gG~~pig~v~~-~~~i~~~~~~~~~~~~~~~~~t~~~-~~~~~aa-a~a~L~~~~~~~~~~ 552 (965)
.+..+..+|++++| |.+++.. ..|++++ ++++++.+..- ........++.+ ++..+++ +.+.++.+. +++.+
T Consensus 241 ~~~~~~~~d~~~~S~kk~~~~~-~gG~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~a~a~~~~~~~~-~~~~~ 316 (456)
T 2ez2_A 241 VHEMFSYADGCTMSGKKDCLVN-IGGFLCMNDDEMFSSAKEL--VVVYEGMPSYGGLAGRDMEAMAIGLREAMQ-YEYIE 316 (456)
T ss_dssp HHHHHTTCSEEEEETTTTTCCS-SCEEEEESCHHHHHHHHHH--HHHHTCCTTTTTCCHHHHHHHHHHHHHHTC-HHHHH
T ss_pred hhhhcccCCEEEEeCcccCCCC-ceeEEEECCHHHHHHHHHH--HhhccCcccccCcchhHHHHHHHHHHHHhH-HHHHH
Confidence 01223447988874 6665531 3677777 57887765430 000001122322 4444444 555555443 45677
Q ss_pred HHHHHHHHHHHHHHcccCCCceeeeeceeEEEEEEEee-cCccchhhH-HHHHHHHH-HHcCcEEeec------------
Q psy8199 553 RISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVII-EDPEQIETF-SKKFFVAA-LKNELLLRPI------------ 617 (965)
Q Consensus 553 ~~~~~~~~l~~~L~~l~~~~~i~~v~g~G~~~~i~~~~-~~~~~~~~~-~~~~~~~l-~~~Gi~~~~~------------ 617 (965)
+.+++.+++.+.|++. ..+.+. +..|.++.+.+.. ..+.....+ ...+...| .++||.+.+.
T Consensus 317 ~~~~~~~~l~~~L~~~-g~~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~~~~~g~~~~~~~~~~g 393 (456)
T 2ez2_A 317 HRVKQVRYLGDKLKAA-GVPIVE--PVGGHAVFLDARRFCEHLTQDEFPAQSLAASIYVETGVRSMERGIISAGRNNVTG 393 (456)
T ss_dssp HHHHHHHHHHHHHHHT-TCCBCS--SCCSSEEEEEHHHHTTTSCGGGCHHHHHHHHHHHHHSEECEEESHHHHCBCTTTC
T ss_pred HHHHHHHHHHHHHhcC-CCcccc--CCCceEEEEEhHHhcCCCChhhccHHHHHHHHHHhcCeeeecccccccccCcccc
Confidence 7788888888888764 222111 2235666665420 011112233 44556677 5889976431
Q ss_pred ------CCEEEEeCCcc-cCHHHHHHHHHhhhccc
Q psy8199 618 ------GNTVYLMPPYI-LNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 618 ------~~~lR~~p~~~-~t~~~i~~~~~~l~~~~ 645 (965)
.+.+||++++. +++++++++++++.+.+
T Consensus 394 ~~~~~~~~~iRis~~~~~~t~e~i~~~~~~l~~~l 428 (456)
T 2ez2_A 394 EHHRPKLETVRLTIPRRVYTYAHMDVVADGIIKLY 428 (456)
T ss_dssp SBCCCSCCEEEEECCTTTCCHHHHHHHHHHHHHHH
T ss_pred ccccCCCCeEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 26899999987 89999999999887654
|
| >3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=99.86 E-value=8.3e-21 Score=216.82 Aligned_cols=320 Identities=12% Similarity=0.071 Sum_probs=215.8
Q ss_pred CCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCe-EEEcCChhHHHHHHHHHHHHHHHhcCCCCceEE
Q psy8199 271 SNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGH-CFYGSDGASAVEVALKMSFHYWYNKGFLNKKKF 349 (965)
Q Consensus 271 ~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~-v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~v 349 (965)
.+|++.+|+.+++. .++ .....+...+++++++++++...+. +++++||++|++.+++.+. .++++|
T Consensus 24 ~~~~v~~a~~~~~~--~~~--~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~sgt~al~~~~~~~~--------~~gd~V 91 (411)
T 3nnk_A 24 ADPRVLRAMSSQLI--GQY--DPAMTHYMNEVMALYRGVFRTENRWTMLVDGTSRAGIEAILVSAI--------RPGDKV 91 (411)
T ss_dssp CCHHHHHHHTSCCC--CTT--CHHHHHHHHHHHHHHHHHHTCCCSEEEEEESCHHHHHHHHHHHHC--------CTTCEE
T ss_pred CCHHHHHHhhcccc--ccc--cHHHHHHHHHHHHHHHHHhCCCCCcEEEECCCcHHHHHHHHHHhc--------CCCCEE
Confidence 47888888876531 111 1112355688899999998766555 7899999999999999873 367899
Q ss_pred EEEcCCccCCccc-cccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEc
Q psy8199 350 ICLQNSYHGETLG-ALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIE 428 (965)
Q Consensus 350 i~~~~~yHg~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~e 428 (965)
++.+++||+.... ..... ...+..+|.+.... .|+++|++++++. ++++|+++
T Consensus 92 l~~~~~~~~~~~~~~~~~~------------g~~~~~v~~~~~~~------------~d~~~l~~~i~~~--~~~~v~~~ 145 (411)
T 3nnk_A 92 LVPVFGRFGHLLCEIARRC------------RAEVHTIEVPWGEV------------FTPDQVEDAVKRI--RPRLLLTV 145 (411)
T ss_dssp EEEECSHHHHHHHHHHHHT------------TCEEEEEECCTTCC------------CCHHHHHHHHHHH--CCSEEEEE
T ss_pred EEecCCchHHHHHHHHHHc------------CCeEEEEecCCCCC------------CCHHHHHHHHhhC--CCeEEEEe
Confidence 9999999884211 11111 11344455432211 2688999998742 46778888
Q ss_pred cccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcceee--eccccCCCcccceeeeec
Q psy8199 429 PLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLC--LSKGITGGYLPLSLVMTT 506 (965)
Q Consensus 429 p~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt--~sK~l~gG~~pig~v~~~ 506 (965)
+ ++|++|.+.+ +++|.++|++||+++|+||+++ +|.. .+....++ +|+++ ++|+++|+ .++|+++++
T Consensus 146 ~-~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~-~~~~--~~~~~~~~--~d~~~~s~~K~l~~~-~g~g~~~~~ 214 (411)
T 3nnk_A 146 Q-GDTSTTMLQP----LAELGEICRRYDALFYTDATAS-LGGN--PLETDVWG--LDAVSAGMQKCLGGP-SGTSPITLS 214 (411)
T ss_dssp S-EETTTTEECC----CTTHHHHHHHHTCEEEEECTTT-BTTB--CCCTTTTT--CSEEECCSTTTTCCC-SSEEEEEEC
T ss_pred C-CCCCcceecc----HHHHHHHHHHcCCEEEEECCcc-cCCc--ccchhccC--CcEEEecCccccCCC-CceEEEEEC
Confidence 8 7999999877 8899999999999999999986 4321 22333333 56665 56887776 589999999
Q ss_pred HHHHHhhhccCCcccccc------------------------------cCCCCCCHHHHHHHHHHHHHHhcc---cHHHH
Q psy8199 507 DKIYNSIYYKNNINIFLH------------------------------SHSYSGNPLACCAALATLEIFNKD---NILQR 553 (965)
Q Consensus 507 ~~i~~~~~~~~~~~~~~~------------------------------~~t~~~~~~~~aaa~a~L~~~~~~---~~~~~ 553 (965)
+++++.+.......+..+ ....+.|..+++++.++++.+.+. ...++
T Consensus 215 ~~~~~~~~~~~~~~~~~~g~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~ 294 (411)
T 3nnk_A 215 ARMEEAIRRRKCVEEGIRTDAHRDGDEEMIYSNYFDLGMVMDYWGPERLNHHTEATTALFGARECARLILQEGLDYGIAR 294 (411)
T ss_dssp HHHHHHHHTTCCCCGGGCCTTCCCCSSCCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHhhcccccccccccccccccCCCCcccccchHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 999887754110000011 122345788888888888876543 56788
Q ss_pred HHHHHHHHHHHHHcccCCCcee-eeeceeEEEEEEEeecCccchhhHHHHHHHHHHHc-CcEEeec-----CCEEEEeC-
Q psy8199 554 ISQDMKKITKALTSLITHPKII-NFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKN-ELLLRPI-----GNTVYLMP- 625 (965)
Q Consensus 554 ~~~~~~~l~~~L~~l~~~~~i~-~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~-Gi~~~~~-----~~~lR~~p- 625 (965)
.+++.+++.+.|+++ ....+. .....+.++.+.+. ++. ....+.+.|.++ ||.++++ ++++|+++
T Consensus 295 ~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~--~~~----~~~~l~~~l~~~~gi~v~~g~~~~~~~~iRi~~~ 367 (411)
T 3nnk_A 295 HKLHGDALVKGIQAM-GLETFGDLKHKMNNVLGVVIP--QGI----NGDQARKLMLEDFGIEIGTSFGPLHGKVWRIGTM 367 (411)
T ss_dssp HHHHHHHHHHHHHHT-TCCBCSCGGGBCSSEEEEECC--TTC----CHHHHHHHHHHHHSEEEEECCGGGTTTEEEEECC
T ss_pred HHHHHHHHHHHHHHc-CCEeCCCcccccccEEEEECC--CCC----CHHHHHHHHHHhcCeEEeCccCCCCCCEEEEeCc
Confidence 888899999998875 211111 11224566666653 111 134677788776 9999873 36999998
Q ss_pred CcccCHHHHHHHHHhhhcccc
Q psy8199 626 PYILNKNEIQHMTSAIFQTFN 646 (965)
Q Consensus 626 ~~~~t~~~i~~~~~~l~~~~~ 646 (965)
++..++++++++++++.+.+.
T Consensus 368 ~~~~~~~~i~~~~~~l~~~l~ 388 (411)
T 3nnk_A 368 GYNARKDCVMTTLSALEAVLN 388 (411)
T ss_dssp GGGCSHHHHHHHHHHHHHHHH
T ss_pred cCcCCHHHHHHHHHHHHHHHH
Confidence 878899999999999876543
|
| >2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.2e-20 Score=214.04 Aligned_cols=333 Identities=11% Similarity=0.045 Sum_probs=222.7
Q ss_pred CcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHH
Q psy8199 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALK 332 (965)
Q Consensus 253 G~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~ 332 (965)
...|+|..+. ++.+|++.+|+.+++.. +. .....+...++.+.++++++.+.+++++++||++|+..+++
T Consensus 8 ~~~yl~~~~~------~~~~~~v~~a~~~~~~~--~~--~~~~~~~~~~l~~~la~~~g~~~~~v~~t~g~t~a~~~~~~ 77 (392)
T 2z9v_A 8 DPVITLTAGP------VNAYPEVLRGLGRTVLY--DY--DPAFQLLYEKVVDKAQKAMRLSNKPVILHGEPVLGLEAAAA 77 (392)
T ss_dssp CCSEECSSSC------CCCCHHHHHHTTSCCCC--TT--SHHHHHHHHHHHHHHHHHTTCSSCCEEESSCTHHHHHHHHH
T ss_pred CcceeecCCC------cCCCHHHHHHHhccccc--cc--cHHHHHHHHHHHHHHHHHhCCCCCEEEEeCCchHHHHHHHH
Confidence 3478886542 45789999999876653 11 11123456789999999997666899999999999999999
Q ss_pred HHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHH
Q psy8199 333 MSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLE 412 (965)
Q Consensus 333 ~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le 412 (965)
.+. .++++|++.+++||+.....+. ......+..+|.+... . .|+++|+
T Consensus 78 ~~~--------~~gd~Vl~~~~~~~~~~~~~~~-----------~~~g~~~~~v~~~~~~-~-----------~d~~~l~ 126 (392)
T 2z9v_A 78 SLI--------SPDDVVLNLASGVYGKGFGYWA-----------KRYSPHLLEIEVPYNE-A-----------IDPQAVA 126 (392)
T ss_dssp HHC--------CTTCCEEEEESSHHHHHHHHHH-----------HHHCSCEEEEECCTTS-C-----------CCHHHHH
T ss_pred Hhc--------CCCCEEEEecCCcccHHHHHHH-----------HHcCCceEEeeCCCCC-C-----------CCHHHHH
Confidence 773 2567899999999886311110 0011134455543211 1 3678999
Q ss_pred HHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcceee--ec
Q psy8199 413 ILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLC--LS 490 (965)
Q Consensus 413 ~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt--~s 490 (965)
+++++. +++++|++++ ++|++|.+.+ +++|.++|++||+++|+||+|+ +|.. .+... +..+|+++ ++
T Consensus 127 ~~l~~~-~~~~~v~~~~-~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~g~~--~~~~~--~~~~d~~~~s~s 195 (392)
T 2z9v_A 127 DMLKAH-PEITVVSVCH-HDTPSGTINP----IDAIGALVSAHGAYLIVDAVSS-FGGM--KTHPE--DCKADIYVTGPN 195 (392)
T ss_dssp HHHHHC-TTCCEEEEES-EEGGGTEECC----HHHHHHHHHHTTCEEEEECTTT-BTTB--SCCGG--GGTCSEEEECSS
T ss_pred HHHhcC-CCCcEEEEec-cCCCCceecc----HHHHHHHHHHcCCeEEEEcccc-cCCc--ccccc--cccceEEEecCc
Confidence 988642 3456788888 8999998887 8999999999999999999996 4432 12222 23478776 46
Q ss_pred cccCCCcccceeeeecHHHHHhhhccC--C--c--------ccc--cccCCCCCCHHHHHHHHHHHHHHhcc---cHHHH
Q psy8199 491 KGITGGYLPLSLVMTTDKIYNSIYYKN--N--I--------NIF--LHSHSYSGNPLACCAALATLEIFNKD---NILQR 553 (965)
Q Consensus 491 K~l~gG~~pig~v~~~~~i~~~~~~~~--~--~--------~~~--~~~~t~~~~~~~~aaa~a~L~~~~~~---~~~~~ 553 (965)
|+++|+ .++|++++++++++.+.... . . ..+ ....+.+.++.+++++.++|+.+.+. ...++
T Consensus 196 K~~~~~-~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~ 274 (392)
T 2z9v_A 196 KCLGAP-PGLTMMGVSERAWAKMKANPLAPRASMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALDLYLNEGPEAVWAR 274 (392)
T ss_dssp STTCCC-SCCEEEEECHHHHHHHHTCTTSCCSSTTCSGGGTTTTSTTSCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred ccccCC-CceeEEEECHHHHHHhhhccCCCCceeccHHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 988775 46799999999887664200 0 0 000 01112345777888888888876543 46778
Q ss_pred HHHHHHHHHHHHHcccCCCcee-e-eeceeEEEEEEEeecCccchhhHHHHHHHHHHHc-CcEEeec-----CCEEEEeC
Q psy8199 554 ISQDMKKITKALTSLITHPKII-N-FRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKN-ELLLRPI-----GNTVYLMP 625 (965)
Q Consensus 554 ~~~~~~~l~~~L~~l~~~~~i~-~-v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~-Gi~~~~~-----~~~lR~~p 625 (965)
.+++.+++.+.|+++ ....+. . ....+.++.+.+. ++. ....+.+.|.++ ||.+.++ .+.+|+++
T Consensus 275 ~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~--~~~----~~~~l~~~L~~~~gi~v~~g~~~~~~~~lRi~~ 347 (392)
T 2z9v_A 275 HALTAKAMRAGVTAM-GLSVWAASDSIASPTTTAVRTP--DGV----DEKALRQAARARYGVVFSSGRGETLGKLTRIGH 347 (392)
T ss_dssp HHHHHHHHHHHHHHT-TCCBSSSSGGGBCTTEEEEECC--TTC----CHHHHHHHHHHHHCEECEECCGGGTTTEEEEEC
T ss_pred HHHHHHHHHHHHHHc-CCeeccCCccccCCceEEEECC--CCC----CHHHHHHHHHhcCCEEEecCCCCCCCCeEEEeC
Confidence 888889999888775 222111 0 0114566666653 111 134677888887 9999874 37999996
Q ss_pred Cc-ccCHHHHHHHHHhhhccc
Q psy8199 626 PY-ILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 626 ~~-~~t~~~i~~~~~~l~~~~ 645 (965)
.. .+++++++++++++.+.+
T Consensus 348 ~~~~~~~~~i~~~~~~l~~~~ 368 (392)
T 2z9v_A 348 MGPTAQPIYAIAALTALGGAM 368 (392)
T ss_dssp CGGGCSHHHHHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHHHHHH
Confidence 43 889999999999887543
|
| >2qgq_A Protein TM_1862; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: CXS; 2.00A {Thermotoga maritima MSB8} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.2e-20 Score=204.19 Aligned_cols=195 Identities=16% Similarity=0.243 Sum_probs=141.4
Q ss_pred EeEeeccCCCCCCCCCCCCCCcCCCCcccccCCCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcc---cHHHHHHHHHHH
Q psy8199 683 VLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDR---DLDNIENMICEV 759 (965)
Q Consensus 683 ~~i~~~s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~---~~~~~~~~~~~i 759 (965)
..+.+ +++|+++|.||.++...+ +++.+++++|+++++.+.+.|++++.|+++....... ..+.+.++++.+
T Consensus 6 ~~v~i-s~GC~~~C~fC~~~~~~g----~~r~r~~e~i~~ei~~l~~~G~~ei~l~g~~~~~yG~~~~~~~~l~~Ll~~l 80 (304)
T 2qgq_A 6 AYVKI-SDGCDRGCTFCSIPSFKG----SLRSRSIEDITREVEDLLKEGKKEIILVAQDTTSYGIDLYRKQALPDLLRRL 80 (304)
T ss_dssp EEEES-BCCC-------------C----CCCBCCHHHHHHHHHHHHHTTCCEEEEECTTGGGTTHHHHSSCCHHHHHHHH
T ss_pred EEEEE-CCCCCCcCccCCccccCC----CceeeCHHHHHHHHHHHHHCCCcEEEEEeEcccccCCCCCcHHHHHHHHHHH
Confidence 45666 899999999999875422 2456899999999999999999999998753221101 124577777777
Q ss_pred Hhc-Cc-EeE---EecCCCCHHHHHHHHHhC--CCeEeccCCC-CHHHHhcccCCCCHHHHHHHHHHHHH--cCCceeee
Q psy8199 760 KKI-GL-ETC---LTLGMLNENQAYRLKKVG--LDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRN--VGINICCG 829 (965)
Q Consensus 760 ~~~-~~-~i~---~~~~~~~~e~l~~Lk~aG--~~~i~i~~es-~~~~~~~i~~~~~~~~~~~~i~~~~~--~Gi~v~~~ 829 (965)
++. ++ .+. +++..++++.++.|+++| ++++.+++|| ++++++.|+++++.++++++++.+++ .|+.+.++
T Consensus 81 ~~~~gi~~ir~~~~~p~~l~~e~l~~l~~~g~~~~~l~i~lqs~s~~vl~~m~r~~t~e~~~~~i~~l~~~~~gi~i~~~ 160 (304)
T 2qgq_A 81 NSLNGEFWIRVMYLHPDHLTEEIISAMLELDKVVKYFDVPVQHGSDKILKLMGRTKSSEELKKMLSSIRERFPDAVLRTS 160 (304)
T ss_dssp HTSSSSCEEEECCCCGGGCCHHHHHHHHHCTTBCCEEECCCBCSCHHHHHHTTCCSCHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred HhcCCCcEEEEeeeecccCCHHHHHHHHhCCCCccEEEEecccCCHHHHHHhCCCCCHHHHHHHHHHHHhhCCCCEEEEE
Confidence 764 54 232 456778999999999999 9999999999 99999999999999999999999999 79999999
Q ss_pred EEEec-CCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCCCC-CCCHHHHHH
Q psy8199 830 GIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSS-ILDPLEFIR 884 (965)
Q Consensus 830 ~i~Gl-~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~~~-~~~~~~~~~ 884 (965)
+|+|+ |||.+++.++++++++++ ++.+.+++|.|.||||+++.+ +++.+...+
T Consensus 161 ~IvG~PgEt~ed~~~t~~~l~~l~--~~~v~~~~~~p~pgT~~~~~~~~v~~~~~~~ 215 (304)
T 2qgq_A 161 IIVGFPGETEEDFEELKQFVEEIQ--FDKLGAFVYSDEEGTVAFNLKEKVDPEMAKR 215 (304)
T ss_dssp EEECCTTCCHHHHHHHHHHHHHHC--CSEEEEEECCC-----------CCCHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHHcC--CCEEEEEEeeCCCCChhHhCcCCCCHHHHHH
Confidence 99999 799999999999999999 899999999999999998765 556544333
|
| >3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=2.4e-20 Score=219.11 Aligned_cols=331 Identities=10% Similarity=0.006 Sum_probs=210.5
Q ss_pred CCCHHHHHHHHHHHhhcccccc---CCC--CcHHHHHHHHHHHhhcCCCC--CeE--EEcCChhHHHHHHHHHHHHHHHh
Q psy8199 270 HSNSYINKALKNQLNKLEHVML---SNL--THKPVIKLSEKLSSLTQYKL--GHC--FYGSDGASAVEVALKMSFHYWYN 340 (965)
Q Consensus 270 h~~p~v~~av~~~~~~~~~~~~---~~~--~~~~~~~la~~l~~~~~~~~--~~v--~~~~sGseA~~~Al~~a~~~~~~ 340 (965)
|.++.+.+++.+++......+. ..+ ..+...+++++++++++... +++ +|++||++|++.|+++++.....
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~le~~l~~~la~~~g~~~~~~~v~~~~t~ggt~a~~~al~a~~~~g~~ 186 (514)
T 3mad_A 107 HGDEHHIAFLNEVYALQSQSNPLHPDLWPSTAKFEAEVVAMTAHMLGGDAAGGTVCGTVTSGGTESLLLAMKTYRDWARA 186 (514)
T ss_dssp CCCHHHHHHHHHHHHHHTTCCTTCTTTCHHHHHHHHHHHHHHHHHTTGGGGTSCCEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhhcCCcccccChHHHHHHHHHHHHHHHHcCCCCccCCcceEEcCcHHHHHHHHHHHHHHHhhh
Confidence 3568888888777754321111 111 22344567788888886443 567 99999999999999999876422
Q ss_pred -cCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCC
Q psy8199 341 -KGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNH 419 (965)
Q Consensus 341 -~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~ 419 (965)
+| .++++|++..++|+++....... ...++.+|..... . .|+++|+++++
T Consensus 187 ~~g-~~~d~Vi~~~~~~~~~~~~~~~~-------------G~~v~~v~~~~~~-~-----------~d~~~Le~~i~--- 237 (514)
T 3mad_A 187 TKG-ITAPEAVVPVSAHAAFDKAAQYF-------------GIKLVRTPLDADY-R-----------ADVAAMREAIT--- 237 (514)
T ss_dssp HHC-CSSCEEEEETTSCTHHHHHHHHH-------------TCEEEEECBCTTS-C-----------BCHHHHHHHCC---
T ss_pred hcC-CCCCeEEEeCccchHHHHHHHHc-------------CCeeEEeeeCCCC-C-----------CCHHHHHHHhc---
Confidence 23 24478999999998863222221 1234555543211 1 27889998885
Q ss_pred CcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCC-----cccc---cccccccCCCcceee--e
Q psy8199 420 NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCG-----RTGK---FFACEHAEIWPDFLC--L 489 (965)
Q Consensus 420 ~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~g-----r~G~---~~~~~~~~~~pDivt--~ 489 (965)
+++++|++++ ++|++|.+.+ +++|+++|++||+++|+||+|++|. +.|. .+.....|+ |+++ +
T Consensus 238 ~~~~~v~~~~-~~nptG~~~~----l~~i~~la~~~~i~livDea~~~~~~~~~~~~g~~~~~~~~~~~g~--d~~~~s~ 310 (514)
T 3mad_A 238 PNTVVVAGSA-PGYPHGVVDP----IPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDFRLEGV--TSVSADT 310 (514)
T ss_dssp TTEEEEEEET-TCTTTCCCCC----HHHHHHHHHHHTCEEEEECTTTTTTHHHHHHTTCCCCCCSTTSTTC--CEEEECT
T ss_pred cCCEEEEEeC-CCCCCccccC----HHHHHHHHHHhCCeEEEecccccccchhHHhcCCCCCcccccCCCC--cEEEECc
Confidence 3678888888 8999999876 8999999999999999999998863 3333 233344454 5554 5
Q ss_pred ccccCCCcccceeeeecHHHHHhhhcc--CCc------ccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q psy8199 490 SKGITGGYLPLSLVMTTDKIYNSIYYK--NNI------NIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKI 561 (965)
Q Consensus 490 sK~l~gG~~pig~v~~~~~i~~~~~~~--~~~------~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l 561 (965)
+|.+.+| .++|+++++++.+...... ..+ ....+++++..+.+++.+++..+....-++..++++++.+++
T Consensus 311 ~K~l~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l 389 (514)
T 3mad_A 311 HKYGYGA-KGTSVILYRRPDLLHYQYFIAADWPGGLYFSPTFAGSRPGALSATAWAAMLSLGEEGYLDATRRILQAADRL 389 (514)
T ss_dssp TTTTCCC-SSCEEEEESSHHHHTTTCEEESSCTTCSEEESSSCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccCCC-CCeEEEEEeCHHHhccccccccccCCCcccCCccCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 6887666 6899998887665432210 000 001122222222344444444443322245778888889999
Q ss_pred HHHHHcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec--CCEEEEeCC-cccCHHHHHHHH
Q psy8199 562 TKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI--GNTVYLMPP-YILNKNEIQHMT 638 (965)
Q Consensus 562 ~~~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~--~~~lR~~p~-~~~t~~~i~~~~ 638 (965)
.+.|+++ +++..+.....++.+... . .....+.+.|.++||++... ++.+|++++ ...+++++++++
T Consensus 390 ~~~L~~~---~g~~~~~~~~~~~~~~~~--~-----~~~~~l~~~L~~~Gi~v~g~~~~~~~Ri~~~~~~~~~e~i~~~l 459 (514)
T 3mad_A 390 KAGVRAI---PSLKILGDPLWVIAVASD--E-----LNIYQVMEEMAGRGWRLNGLHRPPAFHVALTLRHTEPGVVDRFL 459 (514)
T ss_dssp HHHHHTS---TTCEESSCCSSEEEEECS--S-----SCHHHHHHHHHTTTCBCEEETTTTEEEEECCGGGGSTTHHHHHH
T ss_pred HHHHhhC---CCeEEeCCCeEEEEEeCC--C-----CCHHHHHHHHHhcCCEeccCCCCCeEEEEEecCCCCHHHHHHHH
Confidence 9888765 444433333335555432 1 11346888999999987432 368999987 455678999999
Q ss_pred Hhhhccccc
Q psy8199 639 SAIFQTFNE 647 (965)
Q Consensus 639 ~~l~~~~~~ 647 (965)
+++.+++..
T Consensus 460 ~~L~~~l~~ 468 (514)
T 3mad_A 460 ADLQDAVAQ 468 (514)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998776543
|
| >2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.2e-20 Score=214.03 Aligned_cols=334 Identities=11% Similarity=0.074 Sum_probs=219.5
Q ss_pred cCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCC-eEEEcCChhHHHHH
Q psy8199 251 FSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLG-HCFYGSDGASAVEV 329 (965)
Q Consensus 251 ~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~-~v~~~~sGseA~~~ 329 (965)
.+|+.|+|..+... .+|++.+|+.+++.. ++ .....+...++.+.++++++.+.+ ++++++||++|++.
T Consensus 16 ~~~~~~~~~~g~~~------~~~~v~~a~~~~~~~--~~--~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~ 85 (393)
T 2huf_A 16 VTPNKLLMGPGPSN------APQRVLDAMSRPILG--HL--HPETLKIMDDIKEGVRYLFQTNNIATFCLSASGHGGMEA 85 (393)
T ss_dssp CCCCCEECSSSCCC------CCHHHHHHTTSCCCC--TT--SHHHHHHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHH
T ss_pred CCCCeEEecCCCCC------CCHHHHHHHHhhhcc--CC--CHHHHHHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHH
Confidence 45677777554322 689999998876543 11 112345678899999999976554 89999999999999
Q ss_pred HHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHH
Q psy8199 330 ALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIF 409 (965)
Q Consensus 330 Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 409 (965)
+++.+. .++++|++.+++||+.....+. ......+..+|.+.. +. .|++
T Consensus 86 ~~~~~~--------~~gd~vl~~~~~~~~~~~~~~~-----------~~~g~~~~~v~~~~~-~~-----------~d~~ 134 (393)
T 2huf_A 86 TLCNLL--------EDGDVILIGHTGHWGDRSADMA-----------TRYGADVRVVKSKVG-QS-----------LSLD 134 (393)
T ss_dssp HHHHHC--------CTTCEEEEEESSHHHHHHHHHH-----------HHTTCEEEEEECCTT-CC-----------CCHH
T ss_pred HHHHHh--------CCCCEEEEECCCcchHHHHHHH-----------HHcCCeeEEEeCCCC-CC-----------CCHH
Confidence 999873 2567899999999885211110 000112344444321 11 3678
Q ss_pred HHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcceeee
Q psy8199 410 DLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCL 489 (965)
Q Consensus 410 ~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~ 489 (965)
+|++++++. ++++|++++ ++|++|.+.+ +++|.++|++||+++|+||+++ +|.. .+... ...+|++++
T Consensus 135 ~l~~~i~~~--~~~~v~~~~-~~nptG~~~~----l~~i~~~~~~~~~~li~D~a~~-~~~~--~~~~~--~~~~d~~~~ 202 (393)
T 2huf_A 135 EIRDALLIH--KPSVLFLTQ-GDSSTGVLQG----LEGVGALCHQHNCLLIVDTVAS-LGGA--PMFMD--RWEIDAMYT 202 (393)
T ss_dssp HHHHHHHHH--CCSEEEEES-EETTTTEECC----CTTHHHHHHHTTCEEEEECTTT-BTTB--CCCTT--TTTCSEEEC
T ss_pred HHHHHHhcc--CCcEEEEEc-cCCCccccCC----HHHHHHHHHHcCCEEEEEcccc-cCCC--Ccchh--hcCccEEEE
Confidence 898888642 345666667 7999999887 8899999999999999999985 5432 12222 234788765
Q ss_pred --ccccCCCcccceeeeecHHHHHhhhccC-Cccccc---------------ccCCC-CCCHHHHHHHHHHHHHHhc---
Q psy8199 490 --SKGITGGYLPLSLVMTTDKIYNSIYYKN-NINIFL---------------HSHSY-SGNPLACCAALATLEIFNK--- 547 (965)
Q Consensus 490 --sK~l~gG~~pig~v~~~~~i~~~~~~~~-~~~~~~---------------~~~t~-~~~~~~~aaa~a~L~~~~~--- 547 (965)
+|+++|+ .++|++++++++++.+.... ...++. ...++ +.+..+++++.++|+.+.+
T Consensus 203 s~sK~l~g~-~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~ 281 (393)
T 2huf_A 203 GSQKVLGAP-PGITPVSFSHRAVERYKRRNTKVKVYYWDMSLVGDYWGCFGRPRIYHHTISSTLLYGLREAIAMACEEGL 281 (393)
T ss_dssp CSSSTTCCC-SSCEEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCSCCCCHHHHHHHHHHHHHHHHHCH
T ss_pred CCCcccccC-CCeEEEEECHHHHHHHhhcCCCCceEEEchHHHHhhhccccccCCCCCCCCHHHHHHHHHHHHHHHHhCH
Confidence 5988764 46699999999988775420 011111 11222 3466677777778887643
Q ss_pred ccHHHHHHHHHHHHHHHHHcccCCCceeeee-ceeEEEEEEEeecCccchhhHHHHHHHHHHHc-CcEEeec-----CCE
Q psy8199 548 DNILQRISQDMKKITKALTSLITHPKIINFR-QKGMIWAFDVIIEDPEQIETFSKKFFVAALKN-ELLLRPI-----GNT 620 (965)
Q Consensus 548 ~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~-g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~-Gi~~~~~-----~~~ 620 (965)
+...++++++.+++.+.|+++ ....+.... ..+.++.+.+. ++. ....+.+.|.++ ||.+.++ .++
T Consensus 282 ~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~L~~~~gi~v~~g~~~~~~~~ 354 (393)
T 2huf_A 282 PALIARHEDCAKRLYRGLQDA-GFELYADPKDRLSTVTTIKVP--QGV----DWLKAAQYAMKTYLVEISGGLGPTAGQV 354 (393)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-TCCBSSCGGGBCTTEEEEECC--TTC----CHHHHHHHHHHHHCEECBCCCGGGTTTE
T ss_pred HHHHHHHHHHHHHHHHHHHHc-CCeeccCccccCCcEEEEEcC--CCC----CHHHHHHHHHHhCCEEEecCcccccCCE
Confidence 346778888889999988775 222111111 12346666553 111 134577788764 9999874 379
Q ss_pred EEEeC-CcccCHHHHHHHHHhhhccc
Q psy8199 621 VYLMP-PYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 621 lR~~p-~~~~t~~~i~~~~~~l~~~~ 645 (965)
+|+++ ++..++++++++++++.+.+
T Consensus 355 ~Ri~~~~~~~~~e~i~~~~~~l~~~~ 380 (393)
T 2huf_A 355 FRIGLMGQNATTERVDRVLQVFQEAV 380 (393)
T ss_dssp EEEECCGGGCSHHHHHHHHHHHHHHH
T ss_pred EEEEcccCcCCHHHHHHHHHHHHHHH
Confidence 99998 66678999999999887654
|
| >3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans} | Back alignment and structure |
|---|
Probab=99.85 E-value=3e-21 Score=219.62 Aligned_cols=337 Identities=11% Similarity=0.025 Sum_probs=200.4
Q ss_pred EEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccc-----cccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcC
Q psy8199 247 KLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEH-----VMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGS 321 (965)
Q Consensus 247 ~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~-----~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~ 321 (965)
+.++.++..|||+.++. ..+|++.+|+.+++..... +.......+...++.++++++++...+++++++
T Consensus 14 ~~~~~~~~iyld~~~~~------~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~ 87 (400)
T 3vax_A 14 LVPRGSHMTYLDAAATT------RVDQRVADIVLHWMTAEFGNAGSRHEYGIRAKRGVERAREYLASTVSAEPDELIFTS 87 (400)
T ss_dssp --------CCCCCCCCS------SSCHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEEES
T ss_pred CCcccCCcEEecCCCCC------CCCHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHHHHHcCCCCCcEEEeC
Confidence 45678888999987653 4689999999998875311 001112345568899999999986667999999
Q ss_pred ChhHHHHHHHHHHHHHHHhcCCCCce-EEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCCh
Q psy8199 322 DGASAVEVALKMSFHYWYNKGFLNKK-KFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSA 400 (965)
Q Consensus 322 sGseA~~~Al~~a~~~~~~~g~~~~~-~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (965)
||++|++.+++.+..++.. +++ .|++.++.|+++......+.. ....+..+|..... .
T Consensus 88 g~t~al~~~~~~l~~~~~~----~gd~~Vl~~~~~~~~~~~~~~~~~~----------~g~~~~~v~~~~~~-~------ 146 (400)
T 3vax_A 88 GATESNNIALLGLAPYGER----TGRRHIITSAIEHKAVLEPLEHLAG----------RGFEVDFLTPGPSG-R------ 146 (400)
T ss_dssp CHHHHHHHHHHTTHHHHHH----HTCCEEEEETTSCHHHHHHHHHHHT----------TTCEEEEECCCTTC-C------
T ss_pred CHHHHHHHHHHHHHHhhcc----CCCCEEEECccccHhHHHHHHHHHh----------cCCeEEEEccCCCC-C------
Confidence 9999999999987632111 356 899988888765322221110 11134445543211 1
Q ss_pred hHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccccccccccc
Q psy8199 401 NEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHA 480 (965)
Q Consensus 401 ~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~ 480 (965)
.|+++|++++. +++++|++++ ++|++|.+.+ +++|.++|++||+++|+||+|+ +|.. .....
T Consensus 147 -----~d~~~l~~~i~---~~~~~v~~~~-~~nptG~~~~----l~~i~~la~~~~~~li~D~a~~-~~~~----~~~~~ 208 (400)
T 3vax_A 147 -----ISVEGVMERLR---PDTLLVSLMH-VNNETGVIQP----VAELAQQLRATPTYLHVDAAQG-YGKV----PGDLT 208 (400)
T ss_dssp -----CCHHHHHTTCC---TTEEEEECCS-BCTTTCBBCC----HHHHHHHHTTSSCEEEEECTTT-TTTS----GGGGG
T ss_pred -----cCHHHHHHhcC---CCceEEEEEC-CCCCceeeCc----HHHHHHHHHhcCCEEEEEhhhh-cCCC----CcChh
Confidence 26788887774 4678899998 8999999887 8999999999999999999996 4332 12222
Q ss_pred CCCcceeeec--cccCCCcccceeee-ecHH-HH------HhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc--c
Q psy8199 481 EIWPDFLCLS--KGITGGYLPLSLVM-TTDK-IY------NSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK--D 548 (965)
Q Consensus 481 ~~~pDivt~s--K~l~gG~~pig~v~-~~~~-i~------~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~--~ 548 (965)
+. +|++++| | +.|+ .++|+++ ++++ +. ..+..++.. .....+.+.++.+++++.++++.+.+ +
T Consensus 209 ~~-~d~~~~s~~K-~~g~-~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~a~~~al~~~~~~~~ 283 (400)
T 3vax_A 209 TP-IDMISISGHK-IGAP-KGVGALVTRRREEMDDERVPLEPIMFGGGQ--ERKLRPGTLPVPLIMGLAEAAKIFEAEHA 283 (400)
T ss_dssp SC-CSEEEEETGG-GTSC-SSCEEEEECBCSSSTTCBCCCCCSSCSSCT--GGGTSCSCCCHHHHHHHHHHHHHHHHSHH
T ss_pred hc-CcEEEEeHHH-hCCC-CceEEEEEecchhccccccccCceecCCCc--eeeeecCCCCHHHHHHHHHHHHHHHhhHH
Confidence 33 8888655 8 4443 4688888 7762 11 111110000 00112334577888888888887654 4
Q ss_pred cHHHHHHHHHHHHHHHHHcccCCCceeeeece----eEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec-------
Q psy8199 549 NILQRISQDMKKITKALTSLITHPKIINFRQK----GMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI------- 617 (965)
Q Consensus 549 ~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~----G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~------- 617 (965)
+..++.+++.+++.+.|+ . +++...... +.++.+.+. + .....+.+.|. +||.++++
T Consensus 284 ~~~~~~~~~~~~l~~~L~-~---~~~~~~~~~~~~~~~~~~~~~~--~-----~~~~~l~~~L~-~gi~v~~g~~~~~~~ 351 (400)
T 3vax_A 284 QWQVAAQDLRSRLLAGLA-S---TSFQVNGDQDHVVPHILNLSFE--D-----VDAEAFLVTLK-DLVAVATGSASTSAS 351 (400)
T ss_dssp HHHHHHHHHHHHHHHHHT-T---TTCEECSCTTSBCTTEEEEECT--T-----CCHHHHHHHHH-HHHHHTTTTEEEEEE
T ss_pred HHHHHHHHHHHHHHHhhC-C---CCEEEeCCcccCCCCEEEEEeC--C-----CCHHHHHHHHh-cCcEEEecccccCCC
Confidence 567777778888888776 3 344322222 346666543 1 11345777788 88877652
Q ss_pred -----------------CCEEEEeC-CcccCHHHHHHHHHhhhccc
Q psy8199 618 -----------------GNTVYLMP-PYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 618 -----------------~~~lR~~p-~~~~t~~~i~~~~~~l~~~~ 645 (965)
.+.+||++ +...++++++++++++.+.+
T Consensus 352 ~~~~~~~~~~g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~ 397 (400)
T 3vax_A 352 FTPSHVLRAMGLPEEAASKSLRFSWTPGQATDLDVEELARGVAKLK 397 (400)
T ss_dssp ECCHHHHHTTTCCHHHHTSEEEEEEEEC------------------
T ss_pred CCccHHHHHcCCCccccCceEEEEccCCCCCHHHHHHHHHHHHHHh
Confidence 37999998 88899999999999887654
|
| >3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=2.5e-20 Score=214.42 Aligned_cols=354 Identities=10% Similarity=0.081 Sum_probs=209.7
Q ss_pred CCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCC-----CcHHHHHHHHHHHhhcCCCCCeEEEcCChhHH
Q psy8199 252 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNL-----THKPVIKLSEKLSSLTQYKLGHCFYGSDGASA 326 (965)
Q Consensus 252 dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~-----~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA 326 (965)
+|..|||+.++. +.+|++++|+.+++.....+....+ ..+...++.++++++++.+.++++|++||++|
T Consensus 17 ~~~~~Ld~~~~~------~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a 90 (432)
T 3a9z_A 17 NRKVYMDYNATT------PLEPEVIQAVTEAMKEAWGNPSSSYVAGRKAKDIINTARASLAKMIGGKPQDIIFTSGGTES 90 (432)
T ss_dssp -CCEECBTTTCC------CCCHHHHHHHHHHHHHCCSCTTCSSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESCHHHH
T ss_pred CCcEEeeCCccC------CCCHHHHHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHcCCCcCeEEEeCChHHH
Confidence 567899987652 5799999999999876321111122 12345789999999997666799999999999
Q ss_pred HHHHHHHHHH-HHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcc----cCCCeeEecCCCCCCCCCCCChh
Q psy8199 327 VEVALKMSFH-YWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTS----LLNKTYIITTPDSRNINKGNSAN 401 (965)
Q Consensus 327 ~~~Al~~a~~-~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 401 (965)
++.+++.+.. +..... .++++|++++++||++.....+...+......+.. ....+..+|.....+.
T Consensus 91 ~~~~~~~~~~~~~~~~~-~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~~g~~v~~v~~~~~~~~------- 162 (432)
T 3a9z_A 91 NNLVIHSTVRCFHEQQT-LQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQVAEVTFVPVSKVNGQ------- 162 (432)
T ss_dssp HHHHHHHHHHHHHHHHH-HC------------CCCEEEEETTCCHHHHHHHHHHHHTTSCEEEEECCCTTTSS-------
T ss_pred HHHHHHHHHhhhhhccc-cCCccccccccccccCCeEEEecCcchhHHHHHHHHHHhcCcEEEEEecCcccCC-------
Confidence 9999998752 211000 13578999999999973332222222221111111 1234455554321111
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcC----------CeEEEeccccCCCcc
Q psy8199 402 EIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYN----------IHLIADEIAVGCGRT 471 (965)
Q Consensus 402 ~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g----------~llI~DEv~tg~gr~ 471 (965)
.|+++|++++. +++++|++++ ++|++|.+.+ +++|.++|++|| +++|+||+|. +|+.
T Consensus 163 ----~d~~~l~~~i~---~~~~~v~~~~-~~nptG~~~~----~~~i~~l~~~~~~~~~~~~~~~~~livDea~~-~~~~ 229 (432)
T 3a9z_A 163 ----VEVEDILAAVR---PTTCLVTIML-ANNETGVIMP----ISEISRRIKALNQIRAASGLPRVLVHTDAAQA-LGKR 229 (432)
T ss_dssp ----CCHHHHHHTCC---TTEEEEECCS-BCTTTCBBCC----HHHHHHHHHHHHHHHHHHTCCCCEEEEECTTT-TTTS
T ss_pred ----cCHHHHHHhcc---CCceEEEEEC-cccCcccccC----HHHHHHHHHhcCcccccccCCceEEEEEchhh-hCCc
Confidence 26788887774 4578888888 8999999887 788999999999 9999999994 5543
Q ss_pred cccccccccCCCcceeee--ccccCCCcccceeeeecHHH-HHhhhccC-CcccccccCCCCCCHHHHHHHHHHHHHHhc
Q psy8199 472 GKFFACEHAEIWPDFLCL--SKGITGGYLPLSLVMTTDKI-YNSIYYKN-NINIFLHSHSYSGNPLACCAALATLEIFNK 547 (965)
Q Consensus 472 G~~~~~~~~~~~pDivt~--sK~l~gG~~pig~v~~~~~i-~~~~~~~~-~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~ 547 (965)
. + ......+|++++ +|.+ | .++|++++++++ ...+.... .........+++.|+.+++++.++|+.+.+
T Consensus 230 ~--~--~~~~~~~d~~~~s~~K~~--g-~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aal~~~~~ 302 (432)
T 3a9z_A 230 R--V--DVEDLGVDFLTIVGHKFY--G-PRIGALYVRGVGKLTPLYPMLFGGGQERNFRPGTENTPMIAGLGKAADLVSE 302 (432)
T ss_dssp C--C--CHHHHCCSEEEEEGGGTT--C-CSCEEEEETTBTTTBCCCCSCCSSCGGGGTSCSCCCHHHHHHHHHHHHHHHH
T ss_pred c--c--ChhhcCCCEEEEehhHhc--C-CcceEEEEccccccCCcCceeecCCccccccCCCcCHHHHHHHHHHHHHHHh
Confidence 1 1 111235788754 8965 3 469999998765 22222100 000001123356788899888889987654
Q ss_pred --ccHHHHHHHHHHHHHHHHHcccCCCcee------eeeceeEEEEEEEeecCccchhhHHHHHHHHH------------
Q psy8199 548 --DNILQRISQDMKKITKALTSLITHPKII------NFRQKGMIWAFDVIIEDPEQIETFSKKFFVAA------------ 607 (965)
Q Consensus 548 --~~~~~~~~~~~~~l~~~L~~l~~~~~i~------~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l------------ 607 (965)
++..++++++.+++.+.|+++... .+. ..+..+.+..+.+. ..+.. ...+.+.+
T Consensus 303 ~~~~~~~~~~~~~~~l~~~L~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~l~~i~~~~G~~~~ 376 (432)
T 3a9z_A 303 NCETYEAHMRDIRDYLEERLEAEFGK-RIHLNSRFPGVERLPNTCNFSIQ-GSQLR----GYMVLAQCQTLLASVGASCH 376 (432)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHGG-GEEESSCCTTCCBCTTEEEEEEC-STTCC----HHHHHHHCSSEECBSSCGGG
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccCC-cEEEeCCCCcccCCCCEEEEEeC-CCCCc----HHHHHHHhcCeEEecccccc
Confidence 456778888888998888774211 111 01233446666664 11101 12232222
Q ss_pred -----------HHcCcEEeecCCEEEEeCCcccCHHHHHHHHHhhhccc
Q psy8199 608 -----------LKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 608 -----------~~~Gi~~~~~~~~lR~~p~~~~t~~~i~~~~~~l~~~~ 645 (965)
...|+......+++|++++..+++++++++++++.+.+
T Consensus 377 ~~~~~~~~~~l~~~g~~~~~~~~~iRis~~~~~t~eei~~~~~~l~~~~ 425 (432)
T 3a9z_A 377 SDHEDRPSPVLLSCGIPVDVARNAVRLSVGRSTTRAEVDLIVQDLKQAV 425 (432)
T ss_dssp GGGTTSCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCccHHHHhcCCCccccCceEEEEcCCCCCHHHHHHHHHHHHHHH
Confidence 11222111123789999998889999999999987654
|
| >2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=2e-20 Score=212.59 Aligned_cols=322 Identities=12% Similarity=0.060 Sum_probs=215.5
Q ss_pred cccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHH
Q psy8199 254 KRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKM 333 (965)
Q Consensus 254 ~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~ 333 (965)
+.|+|+.++.+. ++ |++.+|+.++++... ....+...++.+.++++++ .+.+++++||++|++.+++.
T Consensus 30 ~~~id~~~~~~~--~~---~~v~~a~~~~~~~~~-----y~~~~~~~~l~~~la~~~~--~~~~v~~~~Gt~a~~~~l~~ 97 (399)
T 2oga_A 30 VPFLDLKAAYEE--LR---AETDAAIARVLDSGR-----YLLGPELEGFEAEFAAYCE--TDHAVGVNSGMDALQLALRG 97 (399)
T ss_dssp BCSCCHHHHHHH--TH---HHHHHHHHHHHHHTC-----CSSSHHHHHHHHHHHHHTT--SSEEEEESCHHHHHHHHHHH
T ss_pred CcccccCcCCCC--CC---HHHHHHHHHHHhcCC-----CCCchhHHHHHHHHHHHHC--CCeEEEecCHHHHHHHHHHH
Confidence 689999888654 32 999999999887631 1234678899999999985 45889999999999999987
Q ss_pred HHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHH
Q psy8199 334 SFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEI 413 (965)
Q Consensus 334 a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~ 413 (965)
++. .++++|++.+++||+..... ...| ..+..+|.....+. .|+++|++
T Consensus 98 ~~~-------~~gd~vl~~~~~~~~~~~~~-~~~g------------~~~~~~~~~~~~~~-----------~d~~~l~~ 146 (399)
T 2oga_A 98 LGI-------GPGDEVIVPSHTYIASWLAV-SATG------------ATPVPVEPHEDHPT-----------LDPLLVEK 146 (399)
T ss_dssp TTC-------CTTCEEEEESSSCTHHHHHH-HHTT------------CEEEEECBCSSSSS-----------BCHHHHHH
T ss_pred hCC-------CCcCEEEECCCccHHHHHHH-HHCC------------CEEEEEecCCCCCC-----------cCHHHHHH
Confidence 621 35688999999999864322 2222 12334443221111 36788888
Q ss_pred HHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcceeeec---
Q psy8199 414 LLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS--- 490 (965)
Q Consensus 414 ~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~s--- 490 (965)
++. +++++|++ ++++|.+.+ +++|.++|++||+++|+||+|+ +|.... ...++..+|++++|
T Consensus 147 ~i~---~~~~~v~~----~n~tG~~~~----l~~i~~l~~~~~~~li~Dea~~-~g~~~~---~~~~~~~~di~~~S~~~ 211 (399)
T 2oga_A 147 AIT---PRTRALLP----VHLYGHPAD----MDALRELADRHGLHIVEDAAQA-HGARYR---GRRIGAGSSVAAFSFYP 211 (399)
T ss_dssp HCC---TTEEEECC----BCGGGCCCC----HHHHHHHHHHHTCEECEECTTC-TTCEET---TEETTCTTCEEEEECCT
T ss_pred hcC---CCCeEEEE----eCCcCCccC----HHHHHHHHHHcCCEEEEECccc-ccCccC---CeecccccCEEEEeCCC
Confidence 875 35677664 356787765 8999999999999999999997 332111 11223336888874
Q ss_pred -cccCCCcccceeeeec-HHHHHhhhc---cCCccccc---ccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Q psy8199 491 -KGITGGYLPLSLVMTT-DKIYNSIYY---KNNINIFL---HSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKIT 562 (965)
Q Consensus 491 -K~l~gG~~pig~v~~~-~~i~~~~~~---~~~~~~~~---~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~ 562 (965)
|.+++.+ +.|+++++ +++++.+.. .+....+. .+.++..++++++++.++|+.++ .+.++.+++.+++.
T Consensus 212 sK~~~~~G-~~g~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~~--~~~~~~~~~~~~l~ 288 (399)
T 2oga_A 212 GKNLGCFG-DGGAVVTGDPELAERLRMLRNYGSRQKYSHETKGTNSRLDEMQAAVLRIRLAHLD--SWNGRRSALAAEYL 288 (399)
T ss_dssp TSSSCCSS-CCEEEEESCHHHHHHHHHHHBTTCSSTTCCCSCCCBCCCCHHHHHHHHHHHHTHH--HHHHHHHHHHHHHH
T ss_pred CccCCcCC-ceEEEEeCCHHHHHHHHHHHhcCccccccccccccCCCcCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 9998722 78888886 788766543 11000011 13345678999999999987654 35677777888888
Q ss_pred HHHHcccCCCcee--eeeceeE--EEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecC--------------------
Q psy8199 563 KALTSLITHPKII--NFRQKGM--IWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG-------------------- 618 (965)
Q Consensus 563 ~~L~~l~~~~~i~--~v~g~G~--~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~-------------------- 618 (965)
+.|+++ +++. .....+. ++.+.+. .. ....+.+.|.++||.+++..
T Consensus 289 ~~L~~~---~g~~~~~~~~~~~~~~~~~~~~-~~------~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~ 358 (399)
T 2oga_A 289 SGLAGL---PGIGLPVTAPDTDPVWHLFTVR-TE------RRDELRSHLDARGIDTLTHYPVPVHLSPAYAGEAPPEGSL 358 (399)
T ss_dssp HHTTTC---TTCBCCCCCTTEECCCSSEEEE-CS------SHHHHHHHHHHTTBCCBCSCSSCGGGSHHHHTTSCCTTSC
T ss_pred HHhccC---CCccccCCCCCCcceeEEEEEE-CC------CHHHHHHHHHHCCCceecCCCCccccchhhcccCCCCCCC
Confidence 877654 2322 1122222 2223332 11 13467888999999987531
Q ss_pred --------CEEEEeCCcccCHHHHHHHHHhhhcccc
Q psy8199 619 --------NTVYLMPPYILNKNEIQHMTSAIFQTFN 646 (965)
Q Consensus 619 --------~~lR~~p~~~~t~~~i~~~~~~l~~~~~ 646 (965)
+.+|++++..+++++++++++++.+.+.
T Consensus 359 p~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~ 394 (399)
T 2oga_A 359 PRAESFARQVLSLPIGPHLERPQALRVIDAVREWAE 394 (399)
T ss_dssp HHHHHHHHHEEEECCSTTCCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHHH
Confidence 4799999999999999999999876543
|
| >1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.85 E-value=5.3e-20 Score=208.12 Aligned_cols=286 Identities=10% Similarity=0.089 Sum_probs=199.0
Q ss_pred CCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcC
Q psy8199 292 SNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQS 371 (965)
Q Consensus 292 ~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~ 371 (965)
..++++...+++++++++++.. ..++++||++|++.+++.+. .++++|++.++.||+........
T Consensus 47 ~~~~~~~~~~l~~~la~~~~~~--~~i~~~sGt~a~~~~~~~~~--------~~g~~vl~~~~~~~~~~~~~~~~----- 111 (386)
T 1cs1_A 47 SRRGNPTRDVVQRALAELEGGA--GAVLTNTGMSAIHLVTTVFL--------KPGDLLVAPHDCYGGSYRLFDSL----- 111 (386)
T ss_dssp TTTCCHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHC--------CTTCEEEEETTCCHHHHHHHHHH-----
T ss_pred eCCCCccHHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHHh--------CCCCEEEEecCCcHhHHHHHHHH-----
Confidence 4567788889999999998643 55555778999999999773 25688999999998742110000
Q ss_pred ccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHH
Q psy8199 372 FKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREI 451 (965)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l 451 (965)
.......+..++. .|+++|++++++ ++++|++++ ++|++|.+.+ +++|+++
T Consensus 112 ----~~~~g~~~~~~~~-----------------~d~~~l~~~i~~---~~~~v~~~~-~~nptG~~~~----l~~i~~l 162 (386)
T 1cs1_A 112 ----AKRGCYRVLFVDQ-----------------GDEQALRAALAE---KPKLVLVES-PSNPLLRVVD----IAKICHL 162 (386)
T ss_dssp ----HTTTSCEEEEECT-----------------TCHHHHHHHHHT---CCSEEEEEC-SCTTTCCCCC----HHHHHHH
T ss_pred ----HHhcCCEEEEeCC-----------------CCHHHHHHhhcc---CCcEEEEeC-CCCCCCcccC----HHHHHHH
Confidence 0011112334443 267889988863 567888898 8999999886 9999999
Q ss_pred HHhcCCeEEEeccccCCCcccccccccccCCCccee--eeccccCCCcccc-eeeeecH-HHHHhhhccCCcccccccCC
Q psy8199 452 CNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL--CLSKGITGGYLPL-SLVMTTD-KIYNSIYYKNNINIFLHSHS 527 (965)
Q Consensus 452 ~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDiv--t~sK~l~gG~~pi-g~v~~~~-~i~~~~~~~~~~~~~~~~~t 527 (965)
|++||+++|+||+|+++... .. . ...+|++ +++|++++++.++ |++++++ ++++.+.. +.++.+
T Consensus 163 ~~~~~~~li~De~~~~~~~~-~~--~---~~~~di~~~s~sK~~~~~~~~~~G~~~~~~~~l~~~l~~------~~~~~~ 230 (386)
T 1cs1_A 163 AREVGAVSVVDNTFLSPALQ-NP--L---ALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAW------WANNIG 230 (386)
T ss_dssp HHHTTCEEEEECTTTCTTTC-CG--G---GGTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHH------HHHHHT
T ss_pred HHHcCCEEEEECCCcccccC-Cc--c---ccCceEEEEcCcccccCCCCceeEEEEeCcHHHHHHHHH------HHHhcC
Confidence 99999999999999876432 11 1 2345666 6899998765566 8888886 78877754 234445
Q ss_pred CCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcccC-----CCceee----------eeceeEEEEEEEeecC
Q psy8199 528 YSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLIT-----HPKIIN----------FRQKGMIWAFDVIIED 592 (965)
Q Consensus 528 ~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~~-----~~~i~~----------v~g~G~~~~i~~~~~~ 592 (965)
.+.+++++++++++++.+. ...++..++.+++.+.|+++.. .+.+.. .++.|.++.+.+. +
T Consensus 231 ~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~ 306 (386)
T 1cs1_A 231 VTGGAFDSYLLLRGLRTLV--PRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELD--G 306 (386)
T ss_dssp CBCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEES--S
T ss_pred CCCCHHHHHHHHhcccHHH--HHHHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCccHHHHHHhcCCCceEEEEEEC--C
Confidence 6689999988888876542 2355666677777777765411 122111 2456889998874 2
Q ss_pred ccchhhHHHHHHHHHHHcCcEEee---c----------------------------CCEEEEeCCcccCHHHHHHHHHhh
Q psy8199 593 PEQIETFSKKFFVAALKNELLLRP---I----------------------------GNTVYLMPPYILNKNEIQHMTSAI 641 (965)
Q Consensus 593 ~~~~~~~~~~~~~~l~~~Gi~~~~---~----------------------------~~~lR~~p~~~~t~~~i~~~~~~l 641 (965)
. ...+.+.|.++||+++. + .+++|+++++..++++++.+.+.+
T Consensus 307 -----~-~~~~~~~l~~~gi~~~~~~~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~~~~~i~~l~~al 380 (386)
T 1cs1_A 307 -----D-EQTLRRFLGGLSLFTLAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGIEDGEDLIADLENGF 380 (386)
T ss_dssp -----C-HHHHHHHHHTCSSSEEBSCCCSSSCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHH
T ss_pred -----C-HHHHHHHHHhCCcceEcccCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHH
Confidence 1 23466778889998863 1 269999999988888888877766
Q ss_pred hc
Q psy8199 642 FQ 643 (965)
Q Consensus 642 ~~ 643 (965)
.+
T Consensus 381 ~~ 382 (386)
T 1cs1_A 381 RA 382 (386)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=5.5e-20 Score=207.60 Aligned_cols=333 Identities=11% Similarity=-0.004 Sum_probs=218.4
Q ss_pred ccccccccchhccCCCCCHHHHHHHHHHHhhccccccC-----CCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHH
Q psy8199 255 RYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLS-----NLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEV 329 (965)
Q Consensus 255 ~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~-----~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~ 329 (965)
-|||+.++. ..+|++.+|+.+++.+....... ....+...++.++++++++.+.+++++++||++|++.
T Consensus 2 iyld~~~~~------~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~~~a~~~ 75 (382)
T 4hvk_A 2 AYFDYTSAK------PVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNL 75 (382)
T ss_dssp CBCBTTTCC------CCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEESSHHHHHHH
T ss_pred EeecCCCcC------CCCHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHcCCCcCeEEEECCchHHHHH
Confidence 488887653 47899999999998763211111 1224456789999999998766789999999999999
Q ss_pred HHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHH
Q psy8199 330 ALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIF 409 (965)
Q Consensus 330 Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 409 (965)
+++.+...+. .+++.|++.++.|++.......+. .....+..+|..... . .|++
T Consensus 76 ~~~~~~~~~~----~~gd~vi~~~~~~~~~~~~~~~~~----------~~g~~~~~v~~~~~~-~-----------~d~~ 129 (382)
T 4hvk_A 76 AIIGYAMRNA----RKGKHILVSAVEHMSVINPAKFLQ----------KQGFEVEYIPVGKYG-E-----------VDVS 129 (382)
T ss_dssp HHHHHHHHHG----GGCCEEEEETTCCHHHHHHHHHHH----------HTTCEEEEECBCTTS-C-----------BCHH
T ss_pred HHHHhhhhhc----CCCCEEEECCCCcHHHHHHHHHHH----------hcCCEEEEeccCCCC-C-----------cCHH
Confidence 9997753210 156789999988887643222110 001123444443211 1 2678
Q ss_pred HHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcceee-
Q psy8199 410 DLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLC- 488 (965)
Q Consensus 410 ~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt- 488 (965)
+|++++. +++++|++++ ++|++|.+.+ +++|.++|++||+ +|+||+|+ +|.. .+..... .+|+++
T Consensus 130 ~l~~~i~---~~~~~v~~~~-~~nptG~~~~----~~~i~~l~~~~~~-li~D~a~~-~~~~--~~~~~~~--~~d~~~~ 195 (382)
T 4hvk_A 130 FIDQKLR---DDTILVSVQH-ANNEIGTIQP----VEEISEVLAGKAA-LHIDATAS-VGQI--EVDVEKI--GADMLTI 195 (382)
T ss_dssp HHHHHCC---TTEEEEECCS-BCTTTCBBCC----HHHHHHHHSSSSE-EEEECTTT-BTTB--CCCHHHH--TCSEEEE
T ss_pred HHHHHhc---cCceEEEEEC-CCCCceeeCC----HHHHHHHHHHcCE-EEEEhHHh-cCCC--CCCchhc--CCCEEEE
Confidence 8888875 4678899998 8999998887 8899999999999 99999986 4321 1222222 357775
Q ss_pred -eccccCCCcccceeeeecHHH-HHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHH
Q psy8199 489 -LSKGITGGYLPLSLVMTTDKI-YNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK--DNILQRISQDMKKITKA 564 (965)
Q Consensus 489 -~sK~l~gG~~pig~v~~~~~i-~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~--~~~~~~~~~~~~~l~~~ 564 (965)
++|.+ |+ .++|+++++++. +..+..++.. .....+.+.++.+++++.++++.+.+ +...++.+++.+++.+.
T Consensus 196 s~~K~~-g~-~g~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~ 271 (382)
T 4hvk_A 196 SSNDIY-GP-KGVGALWIRKEAKLQPVILGGGQ--ENGLRSGSENVPSIVGFGKAAEITAMEWREEAERLRRLRDRIIDN 271 (382)
T ss_dssp ESGGGT-SC-TTCEEEEEETTCCCCCSSCSSCT--GGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eHHHhc-CC-CceEEEEEcCccCcCcccccCCC--cCccccCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 56954 32 358888887654 1111110000 00112334578888888888876543 44667777788888887
Q ss_pred HHcccCCCceeeeece----eEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec-----------------------
Q psy8199 565 LTSLITHPKIINFRQK----GMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI----------------------- 617 (965)
Q Consensus 565 L~~l~~~~~i~~v~g~----G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~----------------------- 617 (965)
|+++ |++...... +.++.+.+. . .....+.+.|.++||.+.++
T Consensus 272 L~~~---~~~~~~~~~~~~~~~~~~~~~~--~-----~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~ 341 (382)
T 4hvk_A 272 VLKI---EESYLNGHPEKRLPNNVNVRFS--Y-----IEGESIVLSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHEE 341 (382)
T ss_dssp HTTS---TTEEECSCSSSBCTTEEEEEET--T-----CCHHHHHHHHHHTTCBCBCC--------CCCHHHHHTTCCHHH
T ss_pred HhcC---CCeEEeCCccccCCCEEEEEEC--C-----CCHHHHHHHHHHCCEEEeeCCccCCCCCcchHHHHHcCCChhh
Confidence 7654 444332222 235555553 1 11346778889999998864
Q ss_pred -CCEEEEeCCcccCHHHHHHHHHhhhccccc
Q psy8199 618 -GNTVYLMPPYILNKNEIQHMTSAIFQTFNE 647 (965)
Q Consensus 618 -~~~lR~~p~~~~t~~~i~~~~~~l~~~~~~ 647 (965)
.+.+|++++..+++++++++++++.+.+.+
T Consensus 342 ~~~~iRl~~~~~~t~e~i~~~~~~l~~~~~~ 372 (382)
T 4hvk_A 342 AHGTLLLTLGRYNTDEDVDRLLEVLPGVIER 372 (382)
T ss_dssp HHTEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCeEEEEcCCCCCHHHHHHHHHHHHHHHHH
Confidence 478999999889999999999998876543
|
| >4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=9.7e-20 Score=205.71 Aligned_cols=333 Identities=11% Similarity=-0.003 Sum_probs=218.4
Q ss_pred ccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCC-----CcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHH
Q psy8199 255 RYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNL-----THKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEV 329 (965)
Q Consensus 255 ~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~-----~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~ 329 (965)
.|||+.++ |+.+|+|++|+.+++..........+ ..+...++.+.++++++.+.+++++++||++|++.
T Consensus 2 ~yld~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~ 75 (382)
T 4eb5_A 2 AYFDYTSA------KPVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNL 75 (382)
T ss_dssp CBCBTTTC------CCCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTCTTEEEEEESSHHHHHHH
T ss_pred eeeccCCC------CCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEcCchHHHHHH
Confidence 48898765 46899999999999876311111112 13466889999999997666799999999999999
Q ss_pred HHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHH
Q psy8199 330 ALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIF 409 (965)
Q Consensus 330 Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 409 (965)
+++.+..++. .++++|++.+++|++.......+.. ....+..+|.... +. .|++
T Consensus 76 ~~~~l~~~~~----~~gd~Vl~~~~~~~~~~~~~~~~~~----------~g~~~~~v~~~~~-~~-----------~d~~ 129 (382)
T 4eb5_A 76 AIIGYAMRNA----RKGKHILVSAVEHMSVINPAKFLQK----------QGFEVEYIPVGKY-GE-----------VDVS 129 (382)
T ss_dssp HHHHHHHHHG----GGCCEEEEETTCCHHHHHHHHHHTT----------TTCEEEEECBCTT-SC-----------BCHH
T ss_pred HHHHHHhhcc----CCCCEEEECCCcchHHHHHHHHHHh----------CCcEEEEeccCCC-Cc-----------cCHH
Confidence 9998863211 1457899999999876333221110 0112344443221 11 2678
Q ss_pred HHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcceee-
Q psy8199 410 DLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLC- 488 (965)
Q Consensus 410 ~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt- 488 (965)
+|++++. +++.+|+++. ++|++|.+.+ +++|.++|++||++ |+||+|+ +|... +.... ..+|+++
T Consensus 130 ~l~~~i~---~~~~~v~~~~-~~nptG~~~~----l~~i~~l~~~~~~~-i~D~a~~-~g~~~--~~~~~--~~~di~~~ 195 (382)
T 4eb5_A 130 FIDQKLR---DDTILVSVQH-ANNEIGTIQP----VEEISEVLAGKAAL-HIDATAS-VGQIE--VDVEK--IGADMLTI 195 (382)
T ss_dssp HHHHHCC---TTEEEEECCS-BCTTTCBBCC----HHHHHHHHTTSSEE-EEECTTT-BTTBC--CCHHH--HTCSEEEE
T ss_pred HHHHHhc---CCCeEEEEec-cCCCccccCC----HHHHHHHHHHCCCE-EEEcchh-cCCcc--cCccc--cCCCEEEe
Confidence 8888875 3577888888 8999999887 89999999999999 9999996 54321 11222 2468775
Q ss_pred -eccccCCCcccceeeeecHHH-HHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHH
Q psy8199 489 -LSKGITGGYLPLSLVMTTDKI-YNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK--DNILQRISQDMKKITKA 564 (965)
Q Consensus 489 -~sK~l~gG~~pig~v~~~~~i-~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~--~~~~~~~~~~~~~l~~~ 564 (965)
++|.++. ..+|+++++++. +..+..++... ......+.++.+++++.++|+.+.+ +...++.+++.+++.+.
T Consensus 196 s~sK~~g~--~g~G~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~ 271 (382)
T 4eb5_A 196 SSNDIYGP--KGVGALWIRKEAKLQPVILGGGQE--NGLRSGSENVPSIVGFGKAAEITAMEWREEAERLRRLRDRIIDN 271 (382)
T ss_dssp ETGGGTCC--SSCEEEEEETTCCCCCSSCSSCTG--GGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ehHHhcCC--CceEEEEEccccccCceecCCCcc--ccccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 5696332 247888888763 22111100000 0112234567777888888887654 34566777777788777
Q ss_pred HHcccCCCceeeeec----eeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec-----------------------
Q psy8199 565 LTSLITHPKIINFRQ----KGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI----------------------- 617 (965)
Q Consensus 565 L~~l~~~~~i~~v~g----~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~----------------------- 617 (965)
|+++ |++....+ .+.++.+.+. . . ....+.+.|.++||.+.++
T Consensus 272 L~~~---~~~~~~~~~~~~~~~~~~~~~~--~-~----~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~ 341 (382)
T 4eb5_A 272 VLKI---EESYLNGHPEKRLPNNVNVRFS--Y-I----EGESIVLSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHEE 341 (382)
T ss_dssp HTTS---TTEEECSCSSSBCTTEEEEEET--T-S----CHHHHHHHHHHHTCBCBCCCGGGTSSCCCCHHHHHTTCCHHH
T ss_pred HhhC---CCeEEeCCcccCCCCEEEEEeC--C-c----CHHHHHHHHHHCCEEEeccccccCCCCcccHHHHHcCCChhc
Confidence 7654 44443322 2556666653 1 0 1345778888999998763
Q ss_pred -CCEEEEeCCcccCHHHHHHHHHhhhccccc
Q psy8199 618 -GNTVYLMPPYILNKNEIQHMTSAIFQTFNE 647 (965)
Q Consensus 618 -~~~lR~~p~~~~t~~~i~~~~~~l~~~~~~ 647 (965)
.+.+|++++...++++++++++++.+.+..
T Consensus 342 ~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~ 372 (382)
T 4eb5_A 342 AHGTLLLTLGRYNTDEDVDRLLEVLPGVIER 372 (382)
T ss_dssp HTTEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 368999988888999999999998876543
|
| >3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=9.6e-20 Score=205.92 Aligned_cols=284 Identities=13% Similarity=0.104 Sum_probs=198.3
Q ss_pred CCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcC
Q psy8199 292 SNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQS 371 (965)
Q Consensus 292 ~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~ 371 (965)
..+.++...+++++++++.+ .+++++++||++|++.+++.+. .++++|++.++.||+........
T Consensus 61 ~r~~~~~~~~l~~~la~~~g--~~~~~~~~sGt~A~~~al~~~~--------~~gd~Vi~~~~~y~~~~~~~~~~----- 125 (392)
T 3qhx_A 61 ARTGNPTRTALEAALAAVED--AAFGRAFSSGMAAADCALRAML--------RPGDHVVIPDDAYGGTFRLIDKV----- 125 (392)
T ss_dssp TTTCCHHHHHHHHHHHHHTT--CSEEEEESSHHHHHHHHHHHHC--------CTTCEEEEETTCCHHHHHHHHHT-----
T ss_pred cCCCChHHHHHHHHHHHHhC--CCcEEEECCHHHHHHHHHHHHh--------CCCCEEEEeCCCcchHHHHHHHH-----
Confidence 45678888999999999985 4589999999999999999763 35689999999998752211110
Q ss_pred ccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHH
Q psy8199 372 FKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREI 451 (965)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l 451 (965)
.......+.+++. .|+++|+++++ +++++|++|+ ++|++|.+.+ +++|+++
T Consensus 126 ----~~~~g~~~~~v~~-----------------~d~~~l~~~i~---~~~~~v~~~~-~~nptG~~~~----l~~i~~l 176 (392)
T 3qhx_A 126 ----FTGWNVEYTPVAL-----------------ADLDAVRAAIR---PTTRLIWVET-PTNPLLSIAD----IAGIAQL 176 (392)
T ss_dssp ----GGGGTCEEEEECT-----------------TCHHHHHHHCC---TTEEEEEEES-SCTTTCCCCC----HHHHHHH
T ss_pred ----HHhcCcEEEEeCC-----------------CCHHHHHHhhC---CCCeEEEEEC-CCCCCcEEec----HHHHHHH
Confidence 1111223444443 26788888875 4789999999 8999999887 9999999
Q ss_pred HHhcCCeEEEeccccCCCcccccccccccCCCcceee--eccccCCCc-ccceeeeec-HHHHHhhhccCCcccccccCC
Q psy8199 452 CNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLC--LSKGITGGY-LPLSLVMTT-DKIYNSIYYKNNINIFLHSHS 527 (965)
Q Consensus 452 ~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt--~sK~l~gG~-~pig~v~~~-~~i~~~~~~~~~~~~~~~~~t 527 (965)
|++||+++|+||+|+.+ . .....+..+|+++ ++|.+++++ .++|+++++ +++++.+.. ..+..+
T Consensus 177 a~~~g~~li~D~~~~~~-~-----~~~~~~~~~di~~~S~sK~lg~~g~~~~G~v~~~~~~~~~~l~~------~~~~~g 244 (392)
T 3qhx_A 177 GADSSAKVLVDNTFASP-A-----LQQPLSLGADVVLHSTTKYIGGHSDVVGGALVTNDEELDQSFAF------LQNGAG 244 (392)
T ss_dssp HHHHTCEEEEECTTTCT-T-----TCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHH------HHHHHC
T ss_pred HHHcCCEEEEECCCccc-c-----cCChHHhCCcEEEEcCccccCCCCCceEEEEEECcHHHHHHHHH------HHHhcC
Confidence 99999999999999632 1 2233345689887 899998753 578888887 578777654 234456
Q ss_pred CCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcccCCCceeee------------------eceeEEEEEEEe
Q psy8199 528 YSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINF------------------RQKGMIWAFDVI 589 (965)
Q Consensus 528 ~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v------------------~g~G~~~~i~~~ 589 (965)
+..+|+.++++++.++.+.. ..++..++.+++.+.|++. |.+..+ +|.|.+++|++.
T Consensus 245 ~~~~~~~~~~~~~~l~~l~~--~~~~~~~~~~~l~~~L~~~---~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~~~~l~ 319 (392)
T 3qhx_A 245 AVPGPFDAYLTMRGLKTLVL--RMQRHSENAAAVAEFLAEH---PAISTVLYPGLPSHPGHAVAARQMRGFGGMVSVRMR 319 (392)
T ss_dssp CCCCHHHHHHHHHHHTTHHH--HHHHHHHHHHHHHHHHHTC---TTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEET
T ss_pred CCCCHHHHHHHHhhhhHHHH--HHHHHHHHHHHHHHHHhcC---CCcceEECCCCCCCCCHHHHHHhCCCCceEEEEEeC
Confidence 77899999998888875532 3566667777777777653 333222 567899999986
Q ss_pred ecCccchhhHHHHHHHHHHHcCcEEe----------e---------------cCCEEEEeCCcccCHHHHHHHHHhh
Q psy8199 590 IEDPEQIETFSKKFFVAALKNELLLR----------P---------------IGNTVYLMPPYILNKNEIQHMTSAI 641 (965)
Q Consensus 590 ~~~~~~~~~~~~~~~~~l~~~Gi~~~----------~---------------~~~~lR~~p~~~~t~~~i~~~~~~l 641 (965)
.+ ...+..+...+...|+.+. | ..+.|||+.....+++.++.+.+++
T Consensus 320 -~~----~~~~~~~~~~l~~~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~g~~~~~iRlSvg~e~~~~~i~~l~~al 391 (392)
T 3qhx_A 320 -AG----RTAAEQLCAKTNIFILAESLGSVESLIEHPSAMTHASTAGSQLEVPDDLVRLSVGIEDVADLLDDLKQAL 391 (392)
T ss_dssp -TC----HHHHHHHHHHCSSSEECSCCCCSSCEEECGGGTSCGGGBTTBCCCCTTEEEEECCSSCHHHHHHHHHHHH
T ss_pred -Cc----HHHHHHHHHhCCCceECCCCCCCCceeeCcccccccccCHHHcCCCCCeEEEEeccCCHHHHHHHHHHHh
Confidence 21 1224456666655554332 1 1256888877766666666655543
|
| >2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=3.8e-20 Score=210.25 Aligned_cols=319 Identities=12% Similarity=0.078 Sum_probs=211.8
Q ss_pred CCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCC-eEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEE
Q psy8199 271 SNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLG-HCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKF 349 (965)
Q Consensus 271 ~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~-~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~v 349 (965)
.+|++.+|+.+++.. ++ ..+......++.+.+++.++...+ ++++++||++|++.+++.+. .++++|
T Consensus 29 ~~~~v~~a~~~~~~~--~~--~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~~~--------~~gd~v 96 (396)
T 2ch1_A 29 CSKRVLTAMTNTVLS--NF--HAELFRTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLSNLL--------EEGDRV 96 (396)
T ss_dssp CCHHHHHHTTSCCCC--TT--CHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHC--------CTTCEE
T ss_pred CCHHHHHHhcccccc--CC--ChhHHHHHHHHHHHHHHHhCCCCCcEEEECCcHHHHHHHHHHHhc--------CCCCeE
Confidence 468888887665432 11 112234578899999999987666 89999999999999999873 256789
Q ss_pred EEEcCCccCCcc-ccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEc
Q psy8199 350 ICLQNSYHGETL-GALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIE 428 (965)
Q Consensus 350 i~~~~~yHg~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~e 428 (965)
++.+++|+++.. ......| ..+..++.+... . .|+++|++++++. ++++|+++
T Consensus 97 l~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~-~-----------~d~~~l~~~l~~~--~~~~v~~~ 150 (396)
T 2ch1_A 97 LIAVNGIWAERAVEMSERYG------------ADVRTIEGPPDR-P-----------FSLETLARAIELH--QPKCLFLT 150 (396)
T ss_dssp EEEESSHHHHHHHHHHHHTT------------CEEEEEECCTTS-C-----------CCHHHHHHHHHHH--CCSEEEEE
T ss_pred EEEcCCcccHHHHHHHHHcC------------CceEEecCCCCC-C-----------CCHHHHHHHHHhC--CCCEEEEE
Confidence 999999998731 1111111 123444443211 1 3678899888742 34566666
Q ss_pred cccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcceeeec--cccCCCcccceeeeec
Q psy8199 429 PLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS--KGITGGYLPLSLVMTT 506 (965)
Q Consensus 429 p~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~s--K~l~gG~~pig~v~~~ 506 (965)
+ ++|++|.+.+ +++|.++|++||+++|+||+|. +|.. ..... ...+|++++| |.++++ .++|+++++
T Consensus 151 ~-~~nptG~~~~----~~~i~~l~~~~~~~li~Dea~~-~g~~--~~~~~--~~~~d~~~~s~~K~~~~~-~g~g~~~~~ 219 (396)
T 2ch1_A 151 H-GDSSSGLLQP----LEGVGQICHQHDCLLIVDAVAS-LCGV--PFYMD--KWEIDAVYTGAQKVLGAP-PGITPISIS 219 (396)
T ss_dssp S-EETTTTEECC----CTTHHHHHHHTTCEEEEECTTT-BTTB--CCCTT--TTTCCEEECCCC-CCCCC-SSCEEEEEC
T ss_pred C-CCCCCceecC----HHHHHHHHHHcCCEEEEEcccc-ccCC--ccchh--hcCcCEEEEcCCccccCC-CCeEEEEEC
Confidence 6 6899998887 8899999999999999999997 6532 12222 2347888755 988876 578999999
Q ss_pred HHHHHhhhccC-Cccccc----------------ccCCCCCCHHHHHHHHHHHHHHhc---ccHHHHHHHHHHHHHHHHH
Q psy8199 507 DKIYNSIYYKN-NINIFL----------------HSHSYSGNPLACCAALATLEIFNK---DNILQRISQDMKKITKALT 566 (965)
Q Consensus 507 ~~i~~~~~~~~-~~~~~~----------------~~~t~~~~~~~~aaa~a~L~~~~~---~~~~~~~~~~~~~l~~~L~ 566 (965)
+++++.+.... +...+. ....++.+..+++++.++|+.+.+ +...++++++.+++.+.|+
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~ 299 (396)
T 2ch1_A 220 PKALDVIRNRRTKSKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLG 299 (396)
T ss_dssp HHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhccCcccceEechHHHHHhhhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 98887764310 000000 112234577788888899987643 2467778888888988887
Q ss_pred cccCCCceeeee--ceeEEEEEEEeecCccchhhHHHHHHHHHHHc-CcEEeec-----CCEEEEeC-CcccCHHHHHHH
Q psy8199 567 SLITHPKIINFR--QKGMIWAFDVIIEDPEQIETFSKKFFVAALKN-ELLLRPI-----GNTVYLMP-PYILNKNEIQHM 637 (965)
Q Consensus 567 ~l~~~~~i~~v~--g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~-Gi~~~~~-----~~~lR~~p-~~~~t~~~i~~~ 637 (965)
++ ....+.... ..+.++.+.+. ++. ....+.+.|.++ ||.++++ .+++|+++ ++..++++++++
T Consensus 300 ~~-g~~~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~L~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~e~i~~~ 372 (396)
T 2ch1_A 300 KM-GLDIFVKDPRHRLPTVTGIMIP--KGV----DWWKVSQYAMNNFSLEVQGGLGPTFGKAWRVGIMGECSTVQKIQFY 372 (396)
T ss_dssp HH-TCCBSSCSGGGBCTTEEEEECC--TTC----CHHHHHHHHHHHHCBCCBCCCGGGTTTEEEEECCGGGCSHHHHHHH
T ss_pred HC-CCeeccCCccccCCceEEEEcC--CCC----CHHHHHHHHHHhCCEEEecCccccCCCEEEEECCCCcCCHHHHHHH
Confidence 76 222111110 12336666553 111 134677888765 9999873 37999998 667899999999
Q ss_pred HHhhhccc
Q psy8199 638 TSAIFQTF 645 (965)
Q Consensus 638 ~~~l~~~~ 645 (965)
++++.+.+
T Consensus 373 ~~~l~~~l 380 (396)
T 2ch1_A 373 LYGFKESL 380 (396)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99887654
|
| >2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.7e-19 Score=203.97 Aligned_cols=303 Identities=13% Similarity=0.055 Sum_probs=203.9
Q ss_pred cCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCc
Q psy8199 267 LFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNK 346 (965)
Q Consensus 267 ~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~ 346 (965)
.++|.+|+.++++.+ .... +......++...+++++++++++ .+++++++||++|++.+++.+. .++
T Consensus 29 ~~~~~~~~~~~~~~~--~~~~-~~y~~~~~~~~~~l~~~la~~~g--~~~~~~~~~gt~a~~~al~~l~--------~~g 95 (412)
T 2cb1_A 29 AYGFKTLEEGQERFA--TGEG-YVYARQKDPTAKALEERLKALEG--ALEAVVLASGQAATFAALLALL--------RPG 95 (412)
T ss_dssp BCCCSSHHHHHHHHH--HCCS-CSBTTTCCHHHHHHHHHHHHHHT--CSEEEEESSHHHHHHHHHHTTC--------CTT
T ss_pred eeecCChHHHHHHhc--cccC-cCcCCCCChHHHHHHHHHHHHhC--CCcEEEECCHHHHHHHHHHHHh--------CCC
Confidence 466777776655544 2222 22234456788999999999995 4689999999999999998762 256
Q ss_pred eEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEE
Q psy8199 347 KKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAII 426 (965)
Q Consensus 347 ~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii 426 (965)
++|++.++.||+......... ......+.+++. |+++|+++++ +++++|+
T Consensus 96 d~vi~~~~~~~~~~~~~~~~~---------~~~g~~~~~~~~------------------~~~~l~~~i~---~~~~~v~ 145 (412)
T 2cb1_A 96 DEVVAAKGLFGQTIGLFGQVL---------SLMGVTVRYVDP------------------EPEAVREALS---AKTRAVF 145 (412)
T ss_dssp CEEEEETTCCHHHHHHHHHTT---------TTTTCEEEEECS------------------SHHHHHHHCC---TTEEEEE
T ss_pred CEEEEeCCCchhHHHHHHHHH---------HHcCCEEEEECC------------------CHHHHHHHhc---cCCeEEE
Confidence 889999999876422111000 001112334332 3678888774 4688999
Q ss_pred EccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcceee--eccccCCCcccceeee
Q psy8199 427 IEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLC--LSKGITGGYLPLSLVM 504 (965)
Q Consensus 427 ~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt--~sK~l~gG~~pig~v~ 504 (965)
+++ ++|++|.+.+ +++|.++|++||+++|+||+|++++... ...+..+|+++ ++|.+++++.++|+++
T Consensus 146 ~~~-~~n~~G~~~~----l~~i~~l~~~~~~~li~D~~~~~~~~~~-----~~~~~~~di~~~S~~K~~~~~~~~~G~~~ 215 (412)
T 2cb1_A 146 VET-VANPALLVPD----LEALATLAEEAGVALVVDNTFGAAGALC-----RPLAWGAHVVVESLTKWASGHGSVLGGAV 215 (412)
T ss_dssp EES-SCTTTCCCCC----HHHHHHHHHHHTCEEEEECGGGTTTTSC-----CGGGGTCSEEEEETTTTTTCSSCCCCEEE
T ss_pred EeC-CCCCCccccc----HHHHHHHHHHcCCEEEEECCCccccccC-----CccccCCeEEEECCcccccCCCCcEEEEE
Confidence 999 8999999886 9999999999999999999998653221 12234578886 7899987557899877
Q ss_pred ecH----------------------------HHHHhhhccCCccccc-ccCCCCCCHHHHHHHHHHHHHHhcccHHHHHH
Q psy8199 505 TTD----------------------------KIYNSIYYKNNINIFL-HSHSYSGNPLACCAALATLEIFNKDNILQRIS 555 (965)
Q Consensus 505 ~~~----------------------------~i~~~~~~~~~~~~~~-~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~ 555 (965)
+.+ ++.+.++. +. ....+..+|.+++.+...++.+. ...++..
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~r~------~~~~~~g~~~~~~~a~~~~~~l~~l~--~~~~~~~ 287 (412)
T 2cb1_A 216 LSRETELWRNYPQFLQPDLKGQIPWEALRARCFPERVRT------LGLSLCGMALSPFNAYLLFQGLETVA--LRVARMS 287 (412)
T ss_dssp EECCCSGGGGSGGGGCC-------HHHHGGGHHHHHHHH------HHTTTTCCCCCHHHHHHHHHHGGGHH--HHHHHHH
T ss_pred EeccccccccccccccccccccchhhccchHHHHHHHHH------HHHHhcCCCCChHHhHHHHcCCchHH--HHHHHHH
Confidence 654 23333322 11 11223557888888777776553 3455666
Q ss_pred HHHHHHHHHHHcccCCCceeee------------------eceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec
Q psy8199 556 QDMKKITKALTSLITHPKIINF------------------RQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI 617 (965)
Q Consensus 556 ~~~~~l~~~L~~l~~~~~i~~v------------------~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~ 617 (965)
++.+++.+.|.+. +++..+ ++.|.++.|.+. + .+.+.+.+.+.||++ ..
T Consensus 288 ~~~~~l~~~L~~~---~~v~~v~~p~~~~~p~~~~~~~~~~~~~~iv~~~~~--~-------~~~~~~~l~~~~i~~-~~ 354 (412)
T 2cb1_A 288 ETARFLAERLQGH---PKVKALRYPGLPEDPAHRNARKYLASGGPILTLDLG--D-------LERASRFLGAIRLLK-AA 354 (412)
T ss_dssp HHHHHHHHHHHTC---TTCSEEECTTSTTCTTHHHHHHHCSSSCSEEEEECS--S-------HHHHHHHHHHCSSEE-CS
T ss_pred HHHHHHHHHHHcC---CCeeEEECCCCCCCccHHHHHHhCCCCceEEEEEeC--C-------HHHHHHHHHhCCeee-ec
Confidence 7888888888764 333322 356778888772 2 223455666778876 22
Q ss_pred -------------------------------CCEEEEeCCcccCHHHHHHHHHhhhc
Q psy8199 618 -------------------------------GNTVYLMPPYILNKNEIQHMTSAIFQ 643 (965)
Q Consensus 618 -------------------------------~~~lR~~p~~~~t~~~i~~~~~~l~~ 643 (965)
.+.+|+++....++++++.+.+++.+
T Consensus 355 s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iR~s~g~~~~~~~i~~l~~al~~ 411 (412)
T 2cb1_A 355 NLGDARTLLVHPWTTTHSRLKEEARLQAGVTPGLVRVSVGLEDPLDLLALFEEALEA 411 (412)
T ss_dssp CCSCSSCEEECTTTTTTTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHC
T ss_pred ccCCCcceeecCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHhh
Confidence 36899999999999999998887753
|
| >2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=2.2e-20 Score=208.41 Aligned_cols=314 Identities=11% Similarity=0.059 Sum_probs=212.0
Q ss_pred CCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCC--CCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceE
Q psy8199 271 SNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYK--LGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKK 348 (965)
Q Consensus 271 ~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~--~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~ 348 (965)
.+|+|.+|+.+++.. +. .....+...++.+.++++++.. .+++++++||++|+..+++.+. + ++
T Consensus 11 ~~~~v~~a~~~~~~~--~~--~~~~~~~~~~l~~~la~~~g~~~~~~~v~~t~g~t~a~~~~~~~~~---------~-d~ 76 (353)
T 2yrr_A 11 IPERVQKALLRPMRG--HL--DPEVLRVNRAIQERLAALFDPGEGALVAALAGSGSLGMEAGLANLD---------R-GP 76 (353)
T ss_dssp CCHHHHGGGGSCCCC--TT--CHHHHHHHHHHHHHHHHHHCCCTTCEEEEESSCHHHHHHHHHHTCS---------C-CC
T ss_pred CCHHHHHHHhccccc--cc--CHHHHHHHHHHHHHHHHHhCCCCCCceEEEcCCcHHHHHHHHHHhc---------C-Cc
Confidence 579999998876653 11 1112345788999999998754 5689999999999999988662 3 67
Q ss_pred EEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEc
Q psy8199 349 FICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIE 428 (965)
Q Consensus 349 vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~e 428 (965)
|++.+++||++...... ......+..+|.+... . .|+++|++++++. ++++|+++
T Consensus 77 vl~~~~~~~~~~~~~~~-----------~~~g~~~~~v~~~~~~-~-----------~d~~~l~~~l~~~--~~~~v~~~ 131 (353)
T 2yrr_A 77 VLVLVNGAFSQRVAEMA-----------ALHGLDPEVLDFPPGE-P-----------VDPEAVARALKRR--RYRMVALV 131 (353)
T ss_dssp EEEEECSHHHHHHHHHH-----------HHTTCCEEEEECCTTS-C-----------CCHHHHHHHHHHS--CCSEEEEE
T ss_pred EEEEcCCCchHHHHHHH-----------HHcCCceEEEeCCCCC-C-----------CCHHHHHHHHHhC--CCCEEEEE
Confidence 99999999885111100 0011134455543211 1 3678899988752 45567777
Q ss_pred cccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcceeee--ccccCCCcccceeeeec
Q psy8199 429 PLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCL--SKGITGGYLPLSLVMTT 506 (965)
Q Consensus 429 p~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~--sK~l~gG~~pig~v~~~ 506 (965)
+ ++|++|.+.+ +++|.++|++||+++|+||+| ++|... +....+ .+|++++ +|.++|+ .++|+++++
T Consensus 132 ~-~~nptG~~~~----~~~i~~l~~~~~~~li~D~a~-~~~~~~--~~~~~~--~~d~~~~s~~K~~~~~-~g~G~~~~~ 200 (353)
T 2yrr_A 132 H-GETSTGVLNP----AEAIGALAKEAGALFFLDAVT-TLGMLP--FSMRAM--GVDYAFTGSQKCLSAP-PGLAPIAAS 200 (353)
T ss_dssp S-EETTTTEECC----HHHHHHHHHHHTCEEEEECTT-TTTTSC--CCHHHH--TCSEEECCTTSTTCCC-SSCEEEEEC
T ss_pred c-cCCCcceecC----HHHHHHHHHHcCCeEEEEcCc-cccccc--cccccc--CceEEEecCcccccCC-CceEEEEEC
Confidence 7 7999999886 889999999999999999999 476542 222222 3687765 6988775 368999999
Q ss_pred HHHHHhhhccCCc-------ccc--cccCCCCCCHHHHHHHHHHHHHHhcc---cHHHHHHHHHHHHHHHHHcccCCCce
Q psy8199 507 DKIYNSIYYKNNI-------NIF--LHSHSYSGNPLACCAALATLEIFNKD---NILQRISQDMKKITKALTSLITHPKI 574 (965)
Q Consensus 507 ~~i~~~~~~~~~~-------~~~--~~~~t~~~~~~~~aaa~a~L~~~~~~---~~~~~~~~~~~~l~~~L~~l~~~~~i 574 (965)
+++++.+...... ... ....+++.++.+++++.++|+.+.+. +..++.+++.+++.+.|+++ ++
T Consensus 201 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~ 276 (353)
T 2yrr_A 201 LEARKAFTGKRGWYLDLARVAEHWERGGYHHTTPVLLHYALLEALDLVLEEGVAARERRAREVYAWVLEELKAR----GF 276 (353)
T ss_dssp HHHHHHCCCCSCSTTCHHHHHHHHTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT----TC
T ss_pred HHHHHHhccCCCccccHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHC----CC
Confidence 9988766410000 000 01123355788888888888876543 46778888888888888765 22
Q ss_pred eeeec---eeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec-----CCEEEEeCCcccCHHHHH-HHHHhhhcc
Q psy8199 575 INFRQ---KGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-----GNTVYLMPPYILNKNEIQ-HMTSAIFQT 644 (965)
Q Consensus 575 ~~v~g---~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-----~~~lR~~p~~~~t~~~i~-~~~~~l~~~ 644 (965)
..+.+ .+.++.+.+. ++. ....+.+.|.++||.+.++ .+++|++++...++++++ ++++++.+.
T Consensus 277 ~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~l~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~~~~~~~~l~~~ 349 (353)
T 2yrr_A 277 RPYPKASPLPTVLVVRPP--EGV----DADRLVRALYAEGVAVAGGIGPTRGQVLRLGLMGEGARREAYQAFLKALDRA 349 (353)
T ss_dssp EESCSSSBCTTEEEEECC--TTC----CHHHHHHHHHHTTEECEECCGGGTTTCEEEECSGGGSCHHHHHHHHHHHHHH
T ss_pred ccccCccCCCeEEEEECC--CCC----CHHHHHHHHHHCCEEEeCCccccCCCeEEEecCccCCHHHHHHHHHHHHHHH
Confidence 22212 3445556653 111 1346788899999999864 368999988788889998 999888654
|
| >3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.1e-20 Score=219.50 Aligned_cols=356 Identities=12% Similarity=0.017 Sum_probs=216.0
Q ss_pred CCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcC----CC-CCeEEEcCChhHH
Q psy8199 252 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQ----YK-LGHCFYGSDGASA 326 (965)
Q Consensus 252 dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~----~~-~~~v~~~~sGseA 326 (965)
.|.+|++...+++....++.+|++++++.+++....++....+..+....+++.+.+..+ .. .+++++|+||++|
T Consensus 97 ~g~~~~~~~i~l~~g~~~~~~~~~v~a~~~~~~~~~y~~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~~i~~t~G~t~a 176 (533)
T 3f6t_A 97 DEDKFLIDAVNYCHTELGLNRDKVVAEWVNGAVANNYPVPDRCLVNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTAA 176 (533)
T ss_dssp HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTCSCCSSSSCCHHHHHHHHHHHHHHHTTTCCCGGGEEEEEEEHHHHH
T ss_pred CcccccHhheeccCCCCCcCCcHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHhcCCCCCCCCcceEEEECCHHHH
Confidence 455666655555556677788999999988887644443445667778888888866522 11 3689999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCC---CCCCCCCCChhHH
Q psy8199 327 VEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPD---SRNINKGNSANEI 403 (965)
Q Consensus 327 ~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 403 (965)
+..+++...... --.++++|++.+++|+++.......+. .+..++.+. ....
T Consensus 177 l~~~~~~l~~~~---l~~~gd~Viv~~p~~~~~~~~~~~~g~-------------~~~~v~~~~~~~~~~~--------- 231 (533)
T 3f6t_A 177 IVYAFHSLAENH---LLKKGDKIAINEPIFTPYLRIPELKDY-------------ELVEVDLHSYEKNDWE--------- 231 (533)
T ss_dssp HHHHHHHHHHTT---SSCTTCEEEEESSCCHHHHTSGGGGGS-------------EEEEECCCEETTTTSE---------
T ss_pred HHHHHHHhhhhh---ccCCcCEEEEcCCCcHHHHHHHHHcCC-------------eEEEEEecCCcccCCC---------
Confidence 999998632110 002568899999999887443332221 233444321 1111
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHH-hcCCeEEEeccccCCCcccccccccccCC
Q psy8199 404 ARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICN-NYNIHLIADEIAVGCGRTGKFFACEHAEI 482 (965)
Q Consensus 404 ~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~-~~g~llI~DEv~tg~gr~G~~~~~~~~~~ 482 (965)
.|+++|++++. +++.+|+++. ++|++|.+. +.+.+++|.++|+ +||+++|+||+|.+|...+........+.
T Consensus 232 --~d~~~l~~~l~---~~~k~v~l~~-p~NPtG~~~-~~~~l~~l~~la~~~~~~~li~De~y~~~~~~~~~~~~~~~~~ 304 (533)
T 3f6t_A 232 --IEPNEIEKLKD---PSIKALIVVN-PTNPTSKEF-DTNALNAIKQAVEKNPKLMIISDEVYGAFVPNFKSIYSVVPYN 304 (533)
T ss_dssp --ECHHHHHHHSC---TTEEEEEEES-SCTTTCBCC-CHHHHHHHHHHHHHCTTCEEEEECTTGGGSTTCCCHHHHSGGG
T ss_pred --CCHHHHHHHhC---CCCeEEEEeC-CCCCCcccc-CHHHHHHHHHHHHhCCCCEEEEcCCccccccCccCHhhcCCCC
Confidence 26788888774 3566666655 589999776 7777999999999 68999999999998865332211111222
Q ss_pred CcceeeeccccC-CCcccceeeeecHH-----HHHhhhc----------c----------------CCcccccccCCCCC
Q psy8199 483 WPDFLCLSKGIT-GGYLPLSLVMTTDK-----IYNSIYY----------K----------------NNINIFLHSHSYSG 530 (965)
Q Consensus 483 ~pDivt~sK~l~-gG~~pig~v~~~~~-----i~~~~~~----------~----------------~~~~~~~~~~t~~~ 530 (965)
...+.+|||.++ .| +++|+++++++ +++.+.. . ..........+.+.
T Consensus 305 ~i~~~S~SK~~g~~G-~RiG~l~~~~~~~~~~li~~l~~~~~~~~~~~~~~~~~~p~~~~~i~rl~~~~~~~~~~~~~~~ 383 (533)
T 3f6t_A 305 TMLVYSYSKLFGCTG-WRLGVIALNEKNVFDDNIAHLDKVELRQLHKRYSSVVLDPDKMKFIDRLCADSRSIGLYHTAGL 383 (533)
T ss_dssp EEEEEESHHHHTCGG-GCEEEEEEESSCHHHHHHHTSCHHHHHHHHHHHHTTCSCGGGCCHHHHHHHHHTTTTTGGGCSC
T ss_pred EEEEecCcccCCCcc-cceEEEEECcHHHHHHHHHhcchhhHHHHHhhhhccccCcchhhhHHHHHHHHHHHHHhcccCC
Confidence 344558999887 45 89999999876 4433210 0 00011223455566
Q ss_pred CHHHHHH----HHHHHH------HHh--cccHHHHHHHHHHHHHHHHHcccCCCceeeeeceeE-EEEEEEeecCc-c-c
Q psy8199 531 NPLACCA----ALATLE------IFN--KDNILQRISQDMKKITKALTSLITHPKIINFRQKGM-IWAFDVIIEDP-E-Q 595 (965)
Q Consensus 531 ~~~~~aa----a~a~L~------~~~--~~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~G~-~~~i~~~~~~~-~-~ 595 (965)
+++++++ ++++|. ... .+...+.++++.+.+.+.|. + + +....+.|. +..+.+. .-. . .
T Consensus 384 ~~~~q~a~a~~a~~~L~~~~g~~~~~~~~~~~~~~~~~r~~~l~~~L~-~---~-~~~~~~~~g~~~~~~l~-~~~~~~~ 457 (533)
T 3f6t_A 384 STPQQIMEALFSMTHLLTSTNGGSDDPYIDIARKLVSERYDQLHDAMQ-A---P-KDETDTNTHYYSLIDIY-RLAEKIY 457 (533)
T ss_dssp CHHHHHHHHHHHHHHHTTCBGGGTBCHHHHHHHHHHHHHHHHHHHHHT-C---C-CCCSTTBCCSEEEEEHH-HHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHhcC-C---C-ccccCCCceEEEEEehH-hhhhhcc
Confidence 7777766 444442 000 02245556666666766664 3 2 333334444 4444432 000 0 0
Q ss_pred hh---------hHHHHHHH-HHHHcCcEEeec------CCEEEEeCCcccCHHHHHHHHHhhhccccc
Q psy8199 596 IE---------TFSKKFFV-AALKNELLLRPI------GNTVYLMPPYILNKNEIQHMTSAIFQTFNE 647 (965)
Q Consensus 596 ~~---------~~~~~~~~-~l~~~Gi~~~~~------~~~lR~~p~~~~t~~~i~~~~~~l~~~~~~ 647 (965)
.. .....+.. .+.++||++.|+ .+++|++.. .+++++++++++++.+++.+
T Consensus 458 g~~~~~~~~~~~~~~~~~~~ll~~~GV~v~pg~~f~~~~~~iRls~a-~~~~e~i~~~i~~L~~~l~~ 524 (533)
T 3f6t_A 458 GKEFRDYLTNNFEQVDFLLKLAEKNGVVLVDGVGFGAKPGELRVSQA-NLPTEDYALIGKQVLELLKE 524 (533)
T ss_dssp CHHHHHHHHHHCCHHHHHHHHHHHTTSSSCTTEEECSSTTEEEEESS-SSCHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHhhccCCHHHHHHHHHHhCCEEEeCCcccCCCCCEEEEEEe-eCCHHHHHHHHHHHHHHHHH
Confidence 00 01123434 445789998873 368999952 26899999999998776543
|
| >1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.84 E-value=3.1e-20 Score=207.21 Aligned_cols=312 Identities=12% Similarity=0.005 Sum_probs=209.6
Q ss_pred CCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEE
Q psy8199 271 SNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFI 350 (965)
Q Consensus 271 ~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi 350 (965)
.+|++++|+.+++.. + ......+...++.++++++++...+++++++||++|++.+++.+. .++++|+
T Consensus 12 ~~~~v~~a~~~~~~~--~--~~~~~~~~~~~l~~~la~~~g~~~~~i~~~~g~t~a~~~~~~~~~--------~~gd~vl 79 (352)
T 1iug_A 12 LHPKALEALARPQLH--H--RTEAAREVFLKARGLLREAFRTEGEVLILTGSGTLAMEALVKNLF--------APGERVL 79 (352)
T ss_dssp CCHHHHHHHHSCCCC--T--TSHHHHHHHHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHHHHHC--------CTTCEEE
T ss_pred CCHHHHHHhccCCCC--c--cCHHHHHHHHHHHHHHHHHhCCCCceEEEcCchHHHHHHHHHhcc--------CCCCeEE
Confidence 579999999877642 1 111123456789999999997666789999999999999999773 2568899
Q ss_pred EEcCCccCCccccc-cccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEcc
Q psy8199 351 CLQNSYHGETLGAL-AVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEP 429 (965)
Q Consensus 351 ~~~~~yHg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep 429 (965)
+.+++|++.....+ ...| ..+..+|.+.... .|+++|++ +++++|++++
T Consensus 80 ~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~------------~d~~~l~~------~~~~~v~~~~ 129 (352)
T 1iug_A 80 VPVYGKFSERFYEIALEAG------------LVVERLDYPYGDT------------PRPEDVAK------EGYAGLLLVH 129 (352)
T ss_dssp EEECSHHHHHHHHHHHHTT------------CEEEEEECCTTCC------------CCTTTSCC------SSCSEEEEES
T ss_pred EEeCCchhHHHHHHHHHcC------------CceEEEeCCCCCC------------CCHHHHhc------cCCcEEEEEE
Confidence 99999998741111 0011 1234444432110 13344443 2455677777
Q ss_pred ccccCCCcccCChHHHHHHHHHHHhc--CCeEEEeccccCCCcccccccccccCCCcceee--eccccCCCcccceeeee
Q psy8199 430 LVQCAGGMIMYDSIYLKLVREICNNY--NIHLIADEIAVGCGRTGKFFACEHAEIWPDFLC--LSKGITGGYLPLSLVMT 505 (965)
Q Consensus 430 ~v~~~~G~~~~~~~~l~~l~~l~~~~--g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt--~sK~l~gG~~pig~v~~ 505 (965)
++|++|.+.+ +++|.++|++| |+++|+||+|+ +|.. .+.... ..+|+++ ++|+++|+ .++|++++
T Consensus 130 -~~nptG~~~~----l~~i~~l~~~~~~~~~li~D~a~~-~~~~--~~~~~~--~~~d~~~~s~~K~~~~~-~g~G~~~~ 198 (352)
T 1iug_A 130 -SETSTGALAD----LPALARAFKEKNPEGLVGADMVTS-LLVG--EVALEA--MGVDAAASGSQKGLMCP-PGLGFVAL 198 (352)
T ss_dssp -EETTTTEECC----HHHHHHHHHHHCTTCEEEEECTTT-BTTB--CCCSGG--GTCSEEEEESSSTTCCC-SCEEEEEE
T ss_pred -ecCCcceecC----HHHHHHHHHhhCCCCEEEEECCcc-ccCc--ceeccc--cCeeEEEecCcccccCC-CceeEEEE
Confidence 7999999887 89999999999 99999999996 5432 122222 2468775 46988775 46899999
Q ss_pred cHHHHHhhhccC-------Ccccc-cccCCCCCCHHHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHHHHHcccCCCcee
Q psy8199 506 TDKIYNSIYYKN-------NINIF-LHSHSYSGNPLACCAALATLEIFNKD--NILQRISQDMKKITKALTSLITHPKII 575 (965)
Q Consensus 506 ~~~i~~~~~~~~-------~~~~~-~~~~t~~~~~~~~aaa~a~L~~~~~~--~~~~~~~~~~~~l~~~L~~l~~~~~i~ 575 (965)
++++++.+..++ ..... ....+++.++.+++++.++|+.+.+. +..++++++.+++.+.|+++ ++.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~ 274 (352)
T 1iug_A 199 SPRALERLKPRGYYLDLARELKAQKEGESAWTPAINLVLAVAAVLEEVLPRLEEHLALKAWQNALLYGVGEEG----GLR 274 (352)
T ss_dssp CHHHHHTCCCCSSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHT----TCE
T ss_pred CHHHHHHhhCCCceeeHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCc
Confidence 998775421000 00000 01223456788888888999876543 56777788888888888765 233
Q ss_pred eeec--eeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec-----CCEEEEeCCcccCHHHHHHHHHhhhccc
Q psy8199 576 NFRQ--KGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-----GNTVYLMPPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 576 ~v~g--~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-----~~~lR~~p~~~~t~~~i~~~~~~l~~~~ 645 (965)
.+.+ .+.++.+.+. ++. ....+.+.|.++||.+.++ .+++|++++...++++++++++++.+.+
T Consensus 275 ~~~~~~~~~~~~~~~~--~~~----~~~~~~~~l~~~gi~v~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~ 345 (352)
T 1iug_A 275 PVPKRFSPAVAAFYLP--EGV----PYARVKEAFAQRGAVIAGGQGPLKGKVFRLSLMGAYDRYEALGVAGMFREVL 345 (352)
T ss_dssp ESCSSBCTTCEEEECC--TTC----CHHHHHHHHHTTTEECEECCGGGTTTEEEECCCSSCCHHHHHHHHHHHHHHH
T ss_pred ccccccCCeEEEEEcC--CCC----CHHHHHHHHHHCCEEEEeCCCccCCCEEEEEccccCCHHHHHHHHHHHHHHH
Confidence 2222 4667777663 111 1346788899999999874 3799999998889999999999887654
|
| >3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia} | Back alignment and structure |
|---|
Probab=99.84 E-value=5.1e-20 Score=212.33 Aligned_cols=342 Identities=9% Similarity=-0.013 Sum_probs=206.6
Q ss_pred ecCCcc-cccccccchhccCCCCCHHHHHHHHHHHhhcc----ccccCCCCcHHHHHHHHHHHhhc-CCC-----CCeEE
Q psy8199 250 TFSGKR-YLDAISSWWVNLFGHSNSYINKALKNQLNKLE----HVMLSNLTHKPVIKLSEKLSSLT-QYK-----LGHCF 318 (965)
Q Consensus 250 d~dG~~-ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~----~~~~~~~~~~~~~~la~~l~~~~-~~~-----~~~v~ 318 (965)
..|++. .+|+..|.+. -.+++|.+.+++++++..+. .....+.......++.+.+++++ +.. .++++
T Consensus 44 ~~~~~~~~i~l~~g~~~--d~~~~~~v~~av~~a~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~g~~~~~~~~~~i~ 121 (448)
T 3meb_A 44 NADTNPKKVNLGVGAYR--DESGKPWILPAVKEAEAIISSDLSKYNKEYPPVAGFPLFLEAAQFLMFGKDSKAAQEGRIA 121 (448)
T ss_dssp HHCCCTTCEEESSCCCC--CTTSCCCCCHHHHHHHHHHHHCTTTTCCSCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEE
T ss_pred HhCCCCCeEEeeccccc--CCCCCEechHHHHHHHHHHhhcccCCCCCCCCCcchHHHHHHHHHHhcCCCccccCcCcEE
Confidence 345554 6888776431 12334455555555522211 11111112223345555555554 433 47999
Q ss_pred E--cCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccc----cccCCcCccchhcccCCCeeEecCCCC-
Q psy8199 319 Y--GSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGAL----AVTNIQSFKEIYTSLLNKTYIITTPDS- 391 (965)
Q Consensus 319 ~--~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~- 391 (965)
+ |+||++|++.++.+.... .++++|++.+++|+++..... ..+ ..+..+|..+.
T Consensus 122 ~~~t~ggt~al~l~~~~~~~~------~~gd~Vlv~~p~~~~~~~~~~~~~~~~G-------------~~v~~~~~~~~~ 182 (448)
T 3meb_A 122 SCQSLSGTGSLHIGFEFLHLW------MPKAEFYMPSTTWPNHYGIYDKVFNKLK-------------VPYKEYTYLRKD 182 (448)
T ss_dssp EEEESHHHHHHHHHHHHHHHH------CTTCCEEEESSCCTHHHHHHHHHHCTTT-------------SCCEEECCBCTT
T ss_pred EEECCcHHHHHHHHHHHHHHh------CCCCEEEECCCCCHhHHHHHHhhHHhCC-------------CeEEEEeccccc
Confidence 9 999999999876654433 356889999999987743322 221 23444454211
Q ss_pred -CCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCc
Q psy8199 392 -RNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGR 470 (965)
Q Consensus 392 -~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr 470 (965)
.+. .|+++|++++++.+.+.+++++.. ++|++|.+. +.+.+++|.++|++||+++|+||+|.+|++
T Consensus 183 ~~~~-----------~d~e~l~~~l~~~~~~~~~v~~~~-p~NPtG~~~-~~~~l~~i~~l~~~~~~~li~Deay~~~~~ 249 (448)
T 3meb_A 183 GELE-----------IDFSNTKKDIQSAPEKSIFLFHAC-AHNPSGIDF-TEAQWKELLPIMKEKKHIAFFDSAYQGFAT 249 (448)
T ss_dssp SCSS-----------BCHHHHHHHHHHSCTTCEEEEESS-SCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEEESCTTTSS
T ss_pred cCCC-----------cCHHHHHHHHHhCCCCcEEEEeCC-CCCCCCcCC-CHHHHHHHHHHHHHCCCEEEEecccccccC
Confidence 111 278899999986544456656555 589999765 778899999999999999999999999976
Q ss_pred ccc---ccccccc-CCCcce---eeeccccCCCcccceee--ee---------cH----HHHHhhhccCCcccccccCCC
Q psy8199 471 TGK---FFACEHA-EIWPDF---LCLSKGITGGYLPLSLV--MT---------TD----KIYNSIYYKNNINIFLHSHSY 528 (965)
Q Consensus 471 ~G~---~~~~~~~-~~~pDi---vt~sK~l~gG~~pig~v--~~---------~~----~i~~~~~~~~~~~~~~~~~t~ 528 (965)
.+. .+....+ +..+++ .+|||.++..++++|++ ++ ++ ++++.+.. .....+.
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~l~~v~~~~~~~~~~~~~~~~~l~~~l~~------~~~~~~~ 323 (448)
T 3meb_A 250 GSFEADAFAVRMFVDAGVEVLVAQSFSKNFGLYGERIGCLHVVHAGVEGSVEKNKALSAAMVSGMTL------QIRKTWS 323 (448)
T ss_dssp SCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGGGCCEEEEEECCCCSSSHHHHHHHHHHHHHHHHH------HHHTTTS
T ss_pred CCcccCchhHHHHhhcCCcEEEEecccccCCCccccceeeeeeeccccccccCCHHHHHHHHHHHHH------HHhcccC
Confidence 541 1222222 334563 36899887422899997 55 45 55555443 2233455
Q ss_pred CCCHHHHHHHHHHHHHHh--------cccHHHHHHHHHHHHHHHHHcccCCCc------eeeeeceeEEEEEEEeecCcc
Q psy8199 529 SGNPLACCAALATLEIFN--------KDNILQRISQDMKKITKALTSLITHPK------IINFRQKGMIWAFDVIIEDPE 594 (965)
Q Consensus 529 ~~~~~~~aaa~a~L~~~~--------~~~~~~~~~~~~~~l~~~L~~l~~~~~------i~~v~g~G~~~~i~~~~~~~~ 594 (965)
+.+.++++++.++|+... -+...++++++++++.+.|+++ ..++ +..+.+.+.++.+.-. +
T Consensus 324 ~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~--~-- 398 (448)
T 3meb_A 324 MSAIHGAYIVQVIVHDKRLLQMFYDNVKEMSARIHRMRSLLHASLAKR-KTPGPGSKGTWDHILTAIGMFTFTGL--T-- 398 (448)
T ss_dssp SCCHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCCSTTTCCCTHHHHCCSSEEECCC--C--
T ss_pred CccHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-CCCCcCcccccceeCCCceEEEecCC--C--
Confidence 667888888888775311 1335566777778888887665 1233 3334445555444211 1
Q ss_pred chhhHHHHHHHH-HHHcCcEEeecCCEEEEeCCcccCHHHHHHHHHhhhccc
Q psy8199 595 QIETFSKKFFVA-ALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 595 ~~~~~~~~~~~~-l~~~Gi~~~~~~~~lR~~p~~~~t~~~i~~~~~~l~~~~ 645 (965)
. ++... +.++||++.|+.+ ||+.. .+++++++++++++.+++
T Consensus 399 -----~-~~~~~ll~~~gV~v~~G~g--Ris~a-~~~~~~i~~~~~~l~~~l 441 (448)
T 3meb_A 399 -----P-EHVDYLKEKWSIYLVKAGG--RMSMC-GLTESNCDYVAEAIHDAV 441 (448)
T ss_dssp -----H-HHHHHHHHHHCEEECSGGG--EEEGG-GCCTTTHHHHHHHHHHHH
T ss_pred -----H-HHHHHHHHhCCEEEeCCCc--EEEEe-cCCHHHHHHHHHHHHHHH
Confidence 1 23344 4578999998543 88843 347778999998887644
|
| >3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.6e-20 Score=211.85 Aligned_cols=327 Identities=10% Similarity=0.041 Sum_probs=214.2
Q ss_pred cCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEE-EcCChhHHHHHHHHHHHHHHHhcCCCC
Q psy8199 267 LFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCF-YGSDGASAVEVALKMSFHYWYNKGFLN 345 (965)
Q Consensus 267 ~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~-~~~sGseA~~~Al~~a~~~~~~~g~~~ 345 (965)
.+|+.++.+.+++.+++.+...........+...+++++++++++...+.++ +++||++|++.+++.+. .+
T Consensus 14 ~~~p~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~~~~~~s~t~al~~~~~~l~--------~~ 85 (416)
T 3isl_A 14 IMTPGPVEVDPRVLRVMSTPVVGQFDPAFTGIMNETMEMLRELFQTKNRWAYPIDGTSRAGIEAVLASVI--------EP 85 (416)
T ss_dssp ECSSSSCCCCHHHHHHTTSCCCCTTSHHHHHHHHHHHHHHHHHTTCCCSEEEEEESCHHHHHHHHHHHHC--------CT
T ss_pred eecCCCcCcCHHHHHHhcccCCCCccHHHHHHHHHHHHHHHHHhCCCCCcEEEecCcHHHHHHHHHHHhc--------CC
Confidence 4666665566666666555311111112245578899999999986666665 89999999999998762 36
Q ss_pred ceEEEEEcCCccCCccc-cccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEE
Q psy8199 346 KKKFICLQNSYHGETLG-ALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAA 424 (965)
Q Consensus 346 ~~~vi~~~~~yHg~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aa 424 (965)
+++|++.+++||+.... .....| ..+..+|.+... . .|+++|++++++. ++++
T Consensus 86 gd~Vl~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~-~-----------~d~~~l~~~i~~~--~~~~ 139 (416)
T 3isl_A 86 EDDVLIPIYGRFGYLLTEIAERYG------------ANVHMLECEWGT-V-----------FDPEDIIREIKKV--KPKI 139 (416)
T ss_dssp TCEEEEEESSHHHHHHHHHHHHTT------------CEEEEEECCTTC-C-----------CCHHHHHHHHHHH--CCSE
T ss_pred CCEEEEecCCcccHHHHHHHHhcC------------CeeEEEecCCCC-C-----------CCHHHHHHHHhhC--CCcE
Confidence 78999999999983211 111111 134445543221 1 2688999998732 3567
Q ss_pred EEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcceeee--ccccCCCccccee
Q psy8199 425 IIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCL--SKGITGGYLPLSL 502 (965)
Q Consensus 425 ii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~--sK~l~gG~~pig~ 502 (965)
|++++ ++|++|.+.+ +++|.++|++||+++|+||+|+ +|.. .+... ...+|++++ +|+++|+ .++|+
T Consensus 140 v~~~~-~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~~~~--~~~~~--~~~~d~~~~s~~K~l~g~-~g~g~ 208 (416)
T 3isl_A 140 VAMVH-GETSTGRIHP----LKAIGEACRTEDALFIVDAVAT-IGGC--EVKVD--EWKIDAAIGGTQKCLSVP-SGMAP 208 (416)
T ss_dssp EEEES-EETTTTEECC----CHHHHHHHHHTTCEEEEECTTT-TTTS--CCCTT--TTTCSEEECCSSSTTCCC-SSEEE
T ss_pred EEEEc-cCCCCceecC----HHHHHHHHHHcCCEEEEECCcc-ccCC--Ccchh--hcCCCEEEecCccccCCC-CCeEE
Confidence 77777 7999998887 8899999999999999999986 4322 12222 234677765 5887776 58999
Q ss_pred eeecHHHHHhhhccC-------------------Cccc------------cccc-CCCCCCHHHHHHHHHHHHHHhcc--
Q psy8199 503 VMTTDKIYNSIYYKN-------------------NINI------------FLHS-HSYSGNPLACCAALATLEIFNKD-- 548 (965)
Q Consensus 503 v~~~~~i~~~~~~~~-------------------~~~~------------~~~~-~t~~~~~~~~aaa~a~L~~~~~~-- 548 (965)
+++++++++.+.... .... .... ...+.+..+++++.++|+.+.+.
T Consensus 209 ~~~~~~~~~~~~~~~~~~~Gw~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~ 288 (416)
T 3isl_A 209 ITYNERVADVIAARKKVERGIATQADRAALSGNRPITSNYFDLSQLEDYWSERRLNHHTEATTMLYALREGVRLVLEEGL 288 (416)
T ss_dssp EEECHHHHHHHHTC------------------CCCCSCSTTCHHHHHHHTSTTCCCSSCCCHHHHHHHHHHHHHHHHHCH
T ss_pred EEECHHHHHHhhccccccccccccccchhccCCCCCCccccchHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHhhH
Confidence 999999887765310 0000 0011 12245778888888888876543
Q ss_pred -cHHHHHHHHHHHHHHHHHcccCCCceeee-eceeEEEEEEEeecCccchhhHHHHHHHHHHHc-CcEEeec-----CCE
Q psy8199 549 -NILQRISQDMKKITKALTSLITHPKIINF-RQKGMIWAFDVIIEDPEQIETFSKKFFVAALKN-ELLLRPI-----GNT 620 (965)
Q Consensus 549 -~~~~~~~~~~~~l~~~L~~l~~~~~i~~v-~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~-Gi~~~~~-----~~~ 620 (965)
+..++.+++.+++.+.|+++ ....+... ...+.++.+.+. ++ .....+.+.|.++ ||.+.++ +++
T Consensus 289 ~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~--~~----~~~~~l~~~L~~~~gi~v~~g~~~~~~~~ 361 (416)
T 3isl_A 289 ETRFERHRHHEAALAAGIKAM-GLRLFGDDSCKMPVVTCVEIP--GG----IDGESVRDMLLAQFGIEIASSFGPLAGKI 361 (416)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-TCCBCSCGGGBCTTEEEEECC--TT----CCHHHHHHHHHHHHCEECBCCCSTTTTTE
T ss_pred HHHHHHHHHHHHHHHHHHHHc-CCEeccCccccCCcEEEEeCC--CC----CCHHHHHHHHHHhCCEEEecCCCCCCCCE
Confidence 57788888889999988774 22111111 112556666653 11 1134677888776 9999863 379
Q ss_pred EEEeCCcccCHHH-HHHHHHhhhccc
Q psy8199 621 VYLMPPYILNKNE-IQHMTSAIFQTF 645 (965)
Q Consensus 621 lR~~p~~~~t~~~-i~~~~~~l~~~~ 645 (965)
+|++++...++++ ++++++++.+.+
T Consensus 362 iRi~~~~~~~~~e~i~~~~~~l~~~~ 387 (416)
T 3isl_A 362 WRIGTMGYSCRKENVLFVLAGLEAVL 387 (416)
T ss_dssp EEEECCGGGCSHHHHHHHHHHHHHHH
T ss_pred EEEecccCCCcHHHHHHHHHHHHHHH
Confidence 9999866666666 999999887654
|
| >1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=2.2e-19 Score=203.77 Aligned_cols=288 Identities=12% Similarity=0.015 Sum_probs=194.7
Q ss_pred CCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcC
Q psy8199 292 SNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQS 371 (965)
Q Consensus 292 ~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~ 371 (965)
..+.++...+++++++++++ .+.+++++||++|+..+++.+. .++++|++.++.||+..........
T Consensus 60 ~r~~~~~~~~l~~~la~~~g--~~~~i~~~sG~~a~~~~l~~~~--------~~gd~vl~~~~~~~~~~~~~~~~~~--- 126 (398)
T 1gc0_A 60 SRISNPTLNLLEARMASLEG--GEAGLALASGMGAITSTLWTLL--------RPGDEVLLGNTLYGCTFAFLHHGIG--- 126 (398)
T ss_dssp ---CCHHHHHHHHHHHHHHT--CSEEEEESSHHHHHHHHHHHHC--------CTTCEEEEESSCCSHHHHHHHHTGG---
T ss_pred cCCCChHHHHHHHHHHHHhC--CCcEEEECCHHHHHHHHHHHHh--------cCCCEEEEeCCCchhHHHHHHHHHH---
Confidence 45678889999999999996 3488888999999999999773 2567899999999886432211110
Q ss_pred ccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHH
Q psy8199 372 FKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREI 451 (965)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l 451 (965)
.....+.+++. .|+++|+++++ +++++|++|+ ++|++|.+.+ +++|.++
T Consensus 127 ------~~g~~~~~~~~-----------------~d~~~l~~~i~---~~~~~v~~~~-~~nptG~~~~----l~~i~~l 175 (398)
T 1gc0_A 127 ------EFGVKLRHVDM-----------------ADLQALEAAMT---PATRVIYFES-PANPNMHMAD----IAGVAKI 175 (398)
T ss_dssp ------GGTCEEEEECT-----------------TCHHHHHHHCC---TTEEEEEEES-SCTTTCCCCC----HHHHHHH
T ss_pred ------HcCCEEEEECC-----------------CCHHHHHHhcC---CCCeEEEEEC-CCCCCccccc----HHHHHHH
Confidence 01112334433 26788888875 4688999999 8999999886 9999999
Q ss_pred HHhcCCeEEEeccccCCCcccccccccccCCCcceeeeccccCCCcccc-eeeeecHHHHH-hhhccCCccccccc-CCC
Q psy8199 452 CNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPL-SLVMTTDKIYN-SIYYKNNINIFLHS-HSY 528 (965)
Q Consensus 452 ~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~sK~l~gG~~pi-g~v~~~~~i~~-~~~~~~~~~~~~~~-~t~ 528 (965)
|++||+++|+||+|+.+ ..+... .++....+.+++|.+++++.|+ |++++++++++ .+.. ..++ .+.
T Consensus 176 ~~~~~~~li~D~~~~~~-~~~~~~---~~~~d~~~~S~sK~~~~~~~~~~G~l~~~~~~~~~~~~~------~~~~~~~~ 245 (398)
T 1gc0_A 176 ARKHGATVVVDNTYCTP-YLQRPL---ELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQ------GLKDMTGA 245 (398)
T ss_dssp HGGGTCEEEEECTTTHH-HHCCGG---GGTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHT------HHHHHTCC
T ss_pred HHHcCCEEEEECCCccc-ccCCch---hhCceEEEECCccccCCCCCCeEEEEEEChHHHHHHHHH------HhhccCCC
Confidence 99999999999999743 222211 2343333447899998765787 88888887665 3432 2233 345
Q ss_pred CCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcccC-----CC------ceee----eeceeEEEEEEEeecCc
Q psy8199 529 SGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLIT-----HP------KIIN----FRQKGMIWAFDVIIEDP 593 (965)
Q Consensus 529 ~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~~-----~~------~i~~----v~g~G~~~~i~~~~~~~ 593 (965)
+.+|+++++++++|+.+. ...++..++.+++.+.|++... +| ++.. .++.|.++.+++. .
T Consensus 246 ~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~L~~~~~v~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~--~- 320 (398)
T 1gc0_A 246 VLSPHDAALLMRGIKTLN--LRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELK--G- 320 (398)
T ss_dssp CCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHHTCTTEEEEEEC----------------CCTTEEEEEET--T-
T ss_pred CCCHHHHHHHHhccchHH--HHHHHHHHHHHHHHHHHhcCCCeeEEECCCCCCCcCHHHHHhhCCCCceEEEEEEC--C-
Confidence 678999999888886542 3456666777777777765310 11 1111 1357888888874 1
Q ss_pred cchhhHHHHHHHHHHHcCcEEee---c----------------------------CCEEEEeCCcccCHHHHHHHHHhhh
Q psy8199 594 EQIETFSKKFFVAALKNELLLRP---I----------------------------GNTVYLMPPYILNKNEIQHMTSAIF 642 (965)
Q Consensus 594 ~~~~~~~~~~~~~l~~~Gi~~~~---~----------------------------~~~lR~~p~~~~t~~~i~~~~~~l~ 642 (965)
. .....+.+.+.|+..+. + .+.+|+++++..++++++.+.+++.
T Consensus 321 ----~-~~~~~~~l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~~~~~~~i~~l~~al~ 395 (398)
T 1gc0_A 321 ----G-IGAGRRFMNALQLFSRAVSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVGLEDIDDLLADVQQALK 395 (398)
T ss_dssp ----H-HHHHHHHHHHCSSSEECSCCSCSSCEEECGGGTTTSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHH
T ss_pred ----C-HHHHHHHHHhCCCceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHHHH
Confidence 0 12344556667776543 1 2689999999999999998888775
Q ss_pred c
Q psy8199 643 Q 643 (965)
Q Consensus 643 ~ 643 (965)
+
T Consensus 396 ~ 396 (398)
T 1gc0_A 396 A 396 (398)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=99.83 E-value=8.7e-20 Score=204.12 Aligned_cols=332 Identities=12% Similarity=0.058 Sum_probs=205.5
Q ss_pred cccccccccchhccCCCC-CHHHHHHHHHHHhhcc-cc-ccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHH
Q psy8199 254 KRYLDAISSWWVNLFGHS-NSYINKALKNQLNKLE-HV-MLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVA 330 (965)
Q Consensus 254 ~~ylD~~~~~~~~~lGh~-~p~v~~av~~~~~~~~-~~-~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~A 330 (965)
|+|+|..++ +.+||++ ||.+.+++.++++... .. .......+...+|+++++++++ .+..++++||++|+..+
T Consensus 3 ~~~~~~~~~--~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~la~~~~--~~~~i~~~~G~~a~~~a 78 (357)
T 3lws_A 3 NRLRTSFQQ--TTGQISGHGKRNVGVLKTAFAAVADEMASDQYGTGAIIEPFEQKFADVLG--MDDAVFFPSGTMAQQVA 78 (357)
T ss_dssp CHHHHHHHT--CSEESSBSSCCBHHHHHHHHTTSCTTCBCEETTEETTHHHHHHHHHHHHT--CSEEEEESCHHHHHHHH
T ss_pred chhhhHHHh--hcccccCCCCCCHHHHHHHHHHhhcccCcccccCChHHHHHHHHHHHHhC--CCcEEEecCcHHHHHHH
Confidence 567774433 4566765 7888888888777632 11 1112234677899999999985 46667779999999999
Q ss_pred HHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHH
Q psy8199 331 LKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFD 410 (965)
Q Consensus 331 l~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 410 (965)
++++... +.+.+|+.++.||.+........ ...+...++.|...+. .|+++
T Consensus 79 l~~~~~~-------gd~~~vi~~~~~~~~~~~~~~~~-----------~~~g~~~~~v~~~~~~-----------~d~~~ 129 (357)
T 3lws_A 79 LRIWSDE-------TDNRTVAYHPLCHLEIHEQDGLK-----------ELHPIETILVGAADRL-----------MTLDE 129 (357)
T ss_dssp HHHHHHH-------HTCCEEEECTTCHHHHSSTTHHH-----------HHSSCEEEECSCTTSC-----------CCHHH
T ss_pred HHHHhhc-------CCCcEEEecccceeeeeccchhh-----------hccCcEEEEecCCCCC-----------cCHHH
Confidence 9987652 33325666666665432210000 0002222222211111 25677
Q ss_pred HHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEecccc-----CCCcccccccccccCCCcc
Q psy8199 411 LEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAV-----GCGRTGKFFACEHAEIWPD 485 (965)
Q Consensus 411 le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-----g~gr~G~~~~~~~~~~~pD 485 (965)
|+++ .+ +++|++++ ++|++|...++.+++++|.++|++||+++|+||+|. ++|+....+. ...|
T Consensus 130 l~~~----~~-~~~v~~~~-p~np~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~-----~~~d 198 (357)
T 3lws_A 130 IKAL----PD-IACLLLEL-PQREIGGVAPAFSELETISRYCRERGIRLHLDGARLFEMLPYYEKTAAEIA-----GLFD 198 (357)
T ss_dssp HHTC----CS-CSEEEEES-SBGGGTSBCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCHHHHH-----TTSS
T ss_pred HhcC----cC-cceEEEEc-ccccCCceeCCHHHHHHHHHHHHHcCCEEEEECchhhhhhhhcCCChHHHH-----hcCC
Confidence 7665 22 66778887 788874456689999999999999999999999875 1222211111 1234
Q ss_pred ee--eeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Q psy8199 486 FL--CLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITK 563 (965)
Q Consensus 486 iv--t~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~ 563 (965)
++ ++||+++|. ..|++++++++++.+..- .. ..+++.......++++.++|+... +..++..++.+++.+
T Consensus 199 ~~~~s~sK~~~~~--~gg~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~ 270 (357)
T 3lws_A 199 SIYISFYKGLGGI--AGAILAGPAAFCQTARIW---KR-RYGGDLISLYPYIVSADYYYELRK--DRMGQYYEQAKQLAE 270 (357)
T ss_dssp EEEEESSSTTCCS--SCEEEEECHHHHHHHHHH---HH-HTTCCCSCCHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred EEEEeccccCCCC--ceEEEEcCHHHHHHHHHH---HH-HhcCCcccchHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 44 899999653 227888899988877530 00 122233333444455667776532 224455777888888
Q ss_pred HHHcccCCCceee--eeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecC------CEEEEeCC---cccCHH
Q psy8199 564 ALTSLITHPKIIN--FRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG------NTVYLMPP---YILNKN 632 (965)
Q Consensus 564 ~L~~l~~~~~i~~--v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~------~~lR~~p~---~~~t~~ 632 (965)
.|+++ +++.. .++.+.++.+.+. .. .......+.+.|.++||+++|+. .++|++.. +..+.+
T Consensus 271 ~L~~~---~g~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~l~~~Gi~v~~g~~~~~~~~~~r~~i~~~~~~~~~~ 343 (357)
T 3lws_A 271 QFNAL---PGVHTTPEVPVSNMFHLHFD-GQ---AADISPKLEQVQEETGLGFVGYLVDKDGYCSTEISVGDAYGELDQQ 343 (357)
T ss_dssp HHHTS---TTEEEESSSCSSSEEEEEEE-SC---HHHHHHHHHHHHHHHCEESCSCCEECSSEEEEEEEBCTTGGGSCHH
T ss_pred HHHhC---CCCeeccCCCcceEEEEEec-CC---hHHHHHHHHHHHHhcCeEEecccccCCCceEEEEEecchhhhcCHH
Confidence 88764 55543 2456778877775 11 11124467788999999998642 37888754 346888
Q ss_pred HHHHHHHhhhcc
Q psy8199 633 EIQHMTSAIFQT 644 (965)
Q Consensus 633 ~i~~~~~~l~~~ 644 (965)
+++++++++.++
T Consensus 344 ~l~~al~~l~~a 355 (357)
T 3lws_A 344 TRDAGFARLRQA 355 (357)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 899988887654
|
| >1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B* | Back alignment and structure |
|---|
Probab=99.82 E-value=2.8e-19 Score=207.42 Aligned_cols=332 Identities=13% Similarity=0.079 Sum_probs=214.4
Q ss_pred CCCCCHHHHHHHHHHHhhcccccc---CCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCC-
Q psy8199 268 FGHSNSYINKALKNQLNKLEHVML---SNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGF- 343 (965)
Q Consensus 268 lGh~~p~v~~av~~~~~~~~~~~~---~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~- 343 (965)
.+|.+|++++++.++......+.. +.+..+...+++++++++++.+. .+++++||++|+..|+++++.+...+|.
T Consensus 75 ~~~~~p~v~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~la~~~g~~~-~~~~~~ggt~a~~~al~~~~~~~~~~Gd~ 153 (474)
T 1wyu_B 75 TMKYNPKLHEEAARLFADLHPYQDPRTAQGALRLMWELGEYLKALTGMDA-ITLEPAAGAHGELTGILIIRAYHEDRGEG 153 (474)
T ss_dssp CCCCCCHHHHHHHHTTSSCCTTSCGGGCHHHHHHHHHHHHHHHHHHTCSE-EECCCSSHHHHHHHHHHHHHHHHHHTTCT
T ss_pred cccCCHHHHHHHHHHHHhcCCCCchhhChHHHHHHHHHHHHHHHHHCCCc-eeecChHHHHHHHHHHHHHHHHHHhcCCc
Confidence 457789999988876222111110 11123567888999999986332 4568899999999999998876555564
Q ss_pred CCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEE
Q psy8199 344 LNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIA 423 (965)
Q Consensus 344 ~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a 423 (965)
+++++|++.+ .+|+....+....| ..++.+|.... +. .|+++|++++. ++++
T Consensus 154 ~~r~~Vlv~~-~~h~~~~~~~~~~G------------~~vv~v~~~~~-~~-----------~d~~~L~~~i~---~~t~ 205 (474)
T 1wyu_B 154 RTRRVVLVPD-SAHGSNPATASMAG------------YQVREIPSGPE-GE-----------VDLEALKRELG---PHVA 205 (474)
T ss_dssp TTCCEEEEET-TSCTHHHHHHHHTT------------CEEEEECBCTT-SS-----------BCHHHHHHHCS---TTEE
T ss_pred cCCCEEEEeC-CcChhhHHHHHHCC------------CEEEEecCCCC-CC-----------cCHHHHHHhhC---CCce
Confidence 4566888877 55666554433322 13445554321 11 26889998884 4588
Q ss_pred EEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcceeee--ccccCC----Cc
Q psy8199 424 AIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCL--SKGITG----GY 497 (965)
Q Consensus 424 aii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~--sK~l~g----G~ 497 (965)
+|++++ + |++|.+. +.+++|.++|++||+++|+||+|..+ ..|.. ....+ .+|++++ +|.+++ |+
T Consensus 206 ~v~~~~-p-n~~G~~~---~~l~~i~~l~~~~g~~li~Dea~~~~-~~g~~-~~~~~--g~di~~~s~~K~~~~p~g~gG 276 (474)
T 1wyu_B 206 ALMLTN-P-NTLGLFE---RRILEISRLCKEAGVQLYYDGANLNA-IMGWA-RPGDM--GFDVVHLNLHKTFTVPHGGGG 276 (474)
T ss_dssp EEEECS-S-CTTSCCC---TTHHHHHHHHHHHTCEEEEEGGGGGG-TTTTC-CHHHH--TCSEEECCTTTTTCCCCTTSC
T ss_pred EEEEEC-C-CCCcccC---CCHHHHHHHHHHcCCEEEEeCchhhh-hccCC-CcccC--CCcEEEEeCccccccCCCCCC
Confidence 888887 5 5688762 22999999999999999999999632 23321 11122 3798876 897753 33
Q ss_pred ccceeeeecHHHHHhhhcc-----CCc--------ccccccCCCCCCHHHHHHHHHHHHHHhcccH---HHHHHHHHHHH
Q psy8199 498 LPLSLVMTTDKIYNSIYYK-----NNI--------NIFLHSHSYSGNPLACCAALATLEIFNKDNI---LQRISQDMKKI 561 (965)
Q Consensus 498 ~pig~v~~~~~i~~~~~~~-----~~~--------~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~---~~~~~~~~~~l 561 (965)
.++|++++++++++.+... +.. .......++++|+++++++.+.|+.+..+.+ .++..++.+++
T Consensus 277 ~~~G~~~~~~~l~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~l~~~g~~~l~~~~~~~~~~~~~l 356 (474)
T 1wyu_B 277 PGSGPVGVKAHLAPYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYL 356 (474)
T ss_dssp CCCCCEEECGGGGGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEcHHHHHhCCCCeeeccCCeeEecccCcccCcccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999988766410 000 0000113445788999999999876544434 67788888999
Q ss_pred HHHHHcccCCCceeeeeceeEE--EEEEEeecCccchhhHHHHHHHHHHHcCcEEee------cCCEEEEeCCcccCHHH
Q psy8199 562 TKALTSLITHPKIINFRQKGMI--WAFDVIIEDPEQIETFSKKFFVAALKNELLLRP------IGNTVYLMPPYILNKNE 633 (965)
Q Consensus 562 ~~~L~~l~~~~~i~~v~g~G~~--~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~------~~~~lR~~p~~~~t~~~ 633 (965)
.+.|+++ . +..+.+.+.+ +.+.+. .+ .....+.+.|.++||.+.. ..+.+||+++...++++
T Consensus 357 ~~~L~~~-g---~~~~~~~~~~~~~~~~~~--~~----~~~~~l~~~L~~~Gi~~~~~~~~~~~~~~lRis~~~~~t~e~ 426 (474)
T 1wyu_B 357 KELLKEK-G---YRVPYDGPSMHEFVAQPP--EG----FRALDLAKGLLELGFHPPTVYFPLIVKEALMVEPTETEAKET 426 (474)
T ss_dssp HHHHHHT-T---CBCSSCSSCCSCEEEBCS--TT----CCHHHHHHHHHHTTCCCCEESCSTTSTTCEEECCCTTSCHHH
T ss_pred HHHHhhc-C---cEecCCCCcceEEEEEcC--CC----CCHHHHHHHHHHCCccccccccccccCCEEEEEeecCCCHHH
Confidence 9988775 2 2211121222 233331 11 1144678889899997532 13689999998889999
Q ss_pred HHHHHHhhhccccc
Q psy8199 634 IQHMTSAIFQTFNE 647 (965)
Q Consensus 634 i~~~~~~l~~~~~~ 647 (965)
++++++++.+....
T Consensus 427 id~~~~~L~~~~~~ 440 (474)
T 1wyu_B 427 LEAFAEAMGALLKK 440 (474)
T ss_dssp HHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHh
Confidence 99999998765543
|
| >2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ... | Back alignment and structure |
|---|
Probab=99.82 E-value=2.4e-19 Score=204.18 Aligned_cols=329 Identities=11% Similarity=0.059 Sum_probs=208.6
Q ss_pred CcccccccccchhccCCCCCHHHHHHHHHHHh-hccc-cccCC-C-CcHHHHH----HHHHHHhhcCCCCCeEEEcCChh
Q psy8199 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLN-KLEH-VMLSN-L-THKPVIK----LSEKLSSLTQYKLGHCFYGSDGA 324 (965)
Q Consensus 253 G~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~-~~~~-~~~~~-~-~~~~~~~----la~~l~~~~~~~~~~v~~~~sGs 324 (965)
++.++|+.++ +++ +|++.+|+.+++. .... +.... + ..+...+ ++++++++++.. ...++++||+
T Consensus 23 ~~~~~~~~~~---~~~---~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~la~~~g~~-~~~i~~~sGt 95 (405)
T 2vi8_A 23 HAKIELIASE---NFV---SRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGAE-HANVQPHSGA 95 (405)
T ss_dssp HHSEECCTTC---CCC---CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCS-EEECCCSSHH
T ss_pred hcceeeccCc---ccC---CHHHHHHHHHHhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhCCC-ceEEEecCcH
Confidence 3567787554 233 8999999999885 3211 11111 1 1233334 446888988643 2345567789
Q ss_pred HHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCcccc--ccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhH
Q psy8199 325 SAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGA--LAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANE 402 (965)
Q Consensus 325 eA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (965)
+|++.+++.+. .++++|++.+++|+++.... ....+. ......++.......
T Consensus 96 ~a~~~a~~~~~--------~~gd~Vl~~~~~~~~~~~~~~~~~~~g~----------~~~~~~~~~~~~~~~-------- 149 (405)
T 2vi8_A 96 QANMAVYFTVL--------EHGDTVLGMNLSHGGHLTHGSPVNFSGV----------QYNFVAYGVDPETHV-------- 149 (405)
T ss_dssp HHHHHHHHHHC--------CTTCEEEEECGGGTCCTTTTCTTSHHHH----------HSEEEEECBCTTTCS--------
T ss_pred HHHHHHHHHhc--------CCCCEEEEecccccchhcccchhhhccc----------eeEEEecccccccCC--------
Confidence 99999999873 25678999988765542111 111110 001222222101111
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCC
Q psy8199 403 IARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEI 482 (965)
Q Consensus 403 ~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~ 482 (965)
.|+++|++++.+. ++++|++.| . + .|...+ +++|+++|++||+++|+||+|+ +|+.+... ...++
T Consensus 150 ---~d~~~l~~~i~~~--~~~~v~~~~-~-~-~~~~~~----l~~i~~l~~~~~~~li~Dea~~-~g~~~~~~--~~~~~ 214 (405)
T 2vi8_A 150 ---IDYDDVREKARLH--RPKLIVAAA-A-A-YPRIID----FAKFREIADEVGAYLMVDMAHI-AGLVAAGL--HPNPV 214 (405)
T ss_dssp ---BCHHHHHHHHHHH--CCSEEEECC-S-S-CCSCCC----HHHHHHHHHHHTCEEEEECTTT-HHHHHTTS--SCCST
T ss_pred ---cCHHHHHHHHHhc--CCeEEEEeC-C-C-CCccCC----HHHHHHHHHHcCCEEEEEcccc-ccccccCc--CCCcc
Confidence 3678899888742 345677765 2 2 243333 8999999999999999999998 55543211 11122
Q ss_pred -Cccee--eeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCC-CHHHHHHHHHHHHHHhc---ccHHHHHH
Q psy8199 483 -WPDFL--CLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSG-NPLACCAALATLEIFNK---DNILQRIS 555 (965)
Q Consensus 483 -~pDiv--t~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~-~~~~~aaa~a~L~~~~~---~~~~~~~~ 555 (965)
.+|++ ++||+++|+ .. |++++++++++.+.. .....++++ ++..++++.++|+.+.+ ++..++++
T Consensus 215 ~~~di~~~s~sK~~~g~-~g-G~~~~~~~~~~~l~~------~~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~ 286 (405)
T 2vi8_A 215 PYAHFVTTTTHKTLRGP-RG-GMILCQEQFAKQIDK------AIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVV 286 (405)
T ss_dssp TTCSEEEEESSSTTCCC-SC-EEEEECHHHHHHHHH------HHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHH
T ss_pred ccCCEEEEeccccCCCC-CC-eEEEEcHHHHHHHHh------hhcccccCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 47877 689999864 23 899999888887754 112233443 67777777888887654 45778888
Q ss_pred HHHHHHHHHHHcccCCCceeee--eceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec-----------CCEEE
Q psy8199 556 QDMKKITKALTSLITHPKIINF--RQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-----------GNTVY 622 (965)
Q Consensus 556 ~~~~~l~~~L~~l~~~~~i~~v--~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-----------~~~lR 622 (965)
++++++.+.|+++ ++..+ .+.+.++.+.+. ..+ .....+.+.|.++||.+.++ .+.+|
T Consensus 287 ~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~iR 357 (405)
T 2vi8_A 287 DNAKRLASALQNE----GFTLVSGGTDNHLLLVDLR-PQQ----LTGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIR 357 (405)
T ss_dssp HHHHHHHHHHHHT----TCEEGGGSCSSSEEEEECG-GGT----CCHHHHHHHHHHHTEECEEECCTTCSSCTTTCSEEE
T ss_pred HHHHHHHHHHHhC----CCeEecCCCCceEEEEEcc-CCC----CCHHHHHHHHHHcCceeccCcCccccCCCCCCCceE
Confidence 8999999988775 23322 245777777764 110 01345778888999999873 25899
Q ss_pred EeCCc----ccCHHHHHHHHHhhhcccc
Q psy8199 623 LMPPY----ILNKNEIQHMTSAIFQTFN 646 (965)
Q Consensus 623 ~~p~~----~~t~~~i~~~~~~l~~~~~ 646 (965)
++++. .+++++++++++++.+.+.
T Consensus 358 is~~~~~~~~~~~~~i~~~~~~l~~~~~ 385 (405)
T 2vi8_A 358 IGTAAVTTRGFGLEEMDEIAAIIGLVLK 385 (405)
T ss_dssp EECHHHHHTTCCHHHHHHHHHHHHHHHT
T ss_pred EeeeeeeecCCCHHHHHHHHHHHHHHHh
Confidence 99887 5789999999999876543
|
| >2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.82 E-value=8.6e-19 Score=204.89 Aligned_cols=355 Identities=10% Similarity=0.087 Sum_probs=213.4
Q ss_pred EecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCC--CCcHHHHHHHHHHHhhcCCCC-CeEEEcCChhH
Q psy8199 249 ITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSN--LTHKPVIKLSEKLSSLTQYKL-GHCFYGSDGAS 325 (965)
Q Consensus 249 ~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~--~~~~~~~~la~~l~~~~~~~~-~~v~~~~sGse 325 (965)
....+..|+|+..+ ++.+|.+++++...+-+.....+.. ...+...++.++++++++.+. +.++|++|||+
T Consensus 96 ~~~~~~~yl~~~~~------~~~~~~v~~~~~~~~~n~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~t~ggt~ 169 (497)
T 2qma_A 96 IFTQHPDCIAHLHT------PPLMPAVAAEAMIAALNQSMDSWDQASSATYVEQKVVNWLCDKYDLSEKADGIFTSGGTQ 169 (497)
T ss_dssp CCTTSTTBCSSSCC------CCBHHHHHHHHHHHHHCCCTTCGGGCHHHHHHHHHHHHHHHHHTTCCTTCEEEEESSHHH
T ss_pred CCCCCCCeeEeCCC------CCcHHHHHHHHHHHhhcccccchhhChHHHHHHHHHHHHHHHHhCCCCCCCeEEcCCchH
Confidence 34566789998765 3467888888866543321111000 112233445666899886543 78999999999
Q ss_pred HHHHHHHHHHHHHH---------hcCCCC--ce-EEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCC
Q psy8199 326 AVEVALKMSFHYWY---------NKGFLN--KK-KFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRN 393 (965)
Q Consensus 326 A~~~Al~~a~~~~~---------~~g~~~--~~-~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (965)
||..|++++|.++. ..|.+. ++ .|++.+. .|.+...+....+. + ...+..+|.....
T Consensus 170 a~~~al~~ar~~~~~~~~~~~~~~~G~~~~~g~~~v~~s~~-~h~s~~~~~~~~g~-g--------~~~v~~v~~~~~~- 238 (497)
T 2qma_A 170 SNQMGLMLARDWIADKLSGHSIQKLGLPDYADKLRIVCSKK-SHFTVQKSASWMGL-G--------EKAVMTVDANADG- 238 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCHHHHCSCGGGGGEEEEEETT-SCTHHHHHHHHTTS-C--------GGGEEEECBCTTS-
T ss_pred HHHHHHHHHHHHHHHhhcccchhhcccccccCCeEEEECCC-chHHHHHHHHHcCC-C--------cccEEEEecCCCC-
Confidence 99999999876432 123221 23 5555544 44443322222211 0 0134555543211
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhC---CCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCc
Q psy8199 394 INKGNSANEIARCAIFDLEILLKKN---HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGR 470 (965)
Q Consensus 394 ~~~~~~~~~~~~~d~~~le~~l~~~---~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr 470 (965)
. .|+++|+++|++. +....+|++.. .++++|.+.+ +++|.++|++||+++|+|++|.|+..
T Consensus 239 ~-----------~d~~~L~~~i~~~~~~~~~~~~vv~~~-~~~~tG~~~~----l~~I~~l~~~~~~~l~vD~a~~~~~~ 302 (497)
T 2qma_A 239 T-----------MDITKLDEVIAQAKAEGLIPFAIVGTA-GTTDHGAIDD----LDFIADMAVKHDMWMHVDGAYGGALI 302 (497)
T ss_dssp S-----------BCGGGHHHHHHHHHHTTCEEEEEEEEB-SCTTTCCBCC----HHHHHHHHHHHTCEEEEEETTGGGGG
T ss_pred c-----------CCHHHHHHHHHHHHHCCCcceEEEEcC-CCCCCCCCCC----HHHHHHHHHHcCCEEEEehhhhHHHH
Confidence 1 2577888888643 12244666665 5888898777 99999999999999999999998755
Q ss_pred ccccccccccCC-Ccceeee--ccccCCCcccceeeeecHH-HHHhhhccCCccccc-ccCCCCCCHHHH----------
Q psy8199 471 TGKFFACEHAEI-WPDFLCL--SKGITGGYLPLSLVMTTDK-IYNSIYYKNNINIFL-HSHSYSGNPLAC---------- 535 (965)
Q Consensus 471 ~G~~~~~~~~~~-~pDivt~--sK~l~gG~~pig~v~~~~~-i~~~~~~~~~~~~~~-~~~t~~~~~~~~---------- 535 (965)
... +.....++ .+|++++ +|.++++ +++|+++++++ .++.+... ..+. ...+...++.+.
T Consensus 303 ~~~-~~~~~~gi~~~D~i~~s~hK~l~~p-~~~G~l~~~~~~~~~~~~~~---~~yl~~~~~~~~~~~~~~~~~~r~~~a 377 (497)
T 2qma_A 303 LSS-HKSRLKGVERAHSISVDFHKLFYQT-ISCGALLVNDKSNFKFLLHH---ADYLNREHDELPNLVDKSIATTKRFDA 377 (497)
T ss_dssp GST-TGGGGTTGGGCSEEEEETTTTTCCC-SSCEEEEESCGGGGGGGCC-----------------------CCSCCCTH
T ss_pred hCc-chHhhcCcccCCEEEEcchhccCCC-cceEEEEEeCHHHHHHhcCC---chhcCCccccCCCccccCCCCCCchhH
Confidence 444 33334466 7899876 8988877 58999988654 34444321 1111 111111222221
Q ss_pred HHHHHHHHHHhcc---cHHHHHHHHHHHHHHHHHcccCCCceeee-eceeEEEEEEEeecCccchhhHHHHHHHHHHHcC
Q psy8199 536 CAALATLEIFNKD---NILQRISQDMKKITKALTSLITHPKIINF-RQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNE 611 (965)
Q Consensus 536 aaa~a~L~~~~~~---~~~~~~~~~~~~l~~~L~~l~~~~~i~~v-~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~G 611 (965)
.+..++|+.+..+ +..++..++.+++.+.|+++ +++..+ .+.+.++.+.+. ............+.+.+.++|
T Consensus 378 l~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~---~~~~~~~~~~~~~v~f~~~-~~~~~~~~l~~~l~~~l~~~G 453 (497)
T 2qma_A 378 LKVFMTMQNVGPKALGDMYDHLLAQTLEVADMIRTN---DQFELLAEPSLSTVLFRAT-HETADLDELNKALRLEALTRG 453 (497)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHTC---TTEEECSCCSSSEEEEEEC-CSSSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhhC---CCeEEEcCCCceEEEEEEc-CCccCHHHHHHHHHHHHHhCC
Confidence 1223445544332 45677778888888888764 444432 345667777775 211111223446778889999
Q ss_pred cEEeec----C-CEEEEeC-CcccCHHHHHHHHHhhhccc
Q psy8199 612 LLLRPI----G-NTVYLMP-PYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 612 i~~~~~----~-~~lR~~p-~~~~t~~~i~~~~~~l~~~~ 645 (965)
+++.+. + +++|+++ +..+++++++++++.+.+..
T Consensus 454 ~~~~~~~~~~g~~~lRis~~~~~~t~edi~~~~~~l~~~~ 493 (497)
T 2qma_A 454 IAVLGETIVDGKTALKFTILNPCLTTSDFESLLSKINMLA 493 (497)
T ss_dssp SCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred CEEEEeeEECCEEEEEEEecCCCCCHHHHHHHHHHHHHHH
Confidence 987642 2 5899997 88999999999999887543
|
| >3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare} | Back alignment and structure |
|---|
Probab=99.82 E-value=5.1e-19 Score=206.52 Aligned_cols=330 Identities=14% Similarity=0.104 Sum_probs=215.1
Q ss_pred CCHHHHHHHHHHHhhcc-----ccccCCCCcHHHHHHHHHHHhhcC--CCCCeEEEcCChhHHHHHHHHHHHHHHHhcCC
Q psy8199 271 SNSYINKALKNQLNKLE-----HVMLSNLTHKPVIKLSEKLSSLTQ--YKLGHCFYGSDGASAVEVALKMSFHYWYNKGF 343 (965)
Q Consensus 271 ~~p~v~~av~~~~~~~~-----~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~ 343 (965)
-++++++++.+++.... .|....+..+.+..+++.+.+..+ .+.+++++++||++|+..++++...
T Consensus 107 ~p~~~~~~a~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~------- 179 (500)
T 3tcm_A 107 FSADSISRAKQILAMIPGRATGAYSHSQGIHGLRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQLLIR------- 179 (500)
T ss_dssp SCHHHHHHHHHHHTTSTTSCSSSCCCTTCCHHHHHHHHHHHHHHHSSCCCGGGEEEESSSHHHHHHHHHHHCC-------
T ss_pred CCHHHHHHHHHHHHcCCCCcCCCcCCCcChHHHHHHHHHHHHhhcCCCCCcccEEEcCCHHHHHHHHHHHHcC-------
Confidence 47788888888877631 222233445666777777766543 3567999999999999999987741
Q ss_pred CCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhC---CC
Q psy8199 344 LNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKN---HN 420 (965)
Q Consensus 344 ~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~---~~ 420 (965)
.+++.|++.+++|+++.......+. .+..++........ .|+++|++++++. +.
T Consensus 180 ~~gd~Vlv~~p~y~~~~~~~~~~g~-------------~~~~~~~~~~~~~~----------~d~~~l~~~l~~~~~~~~ 236 (500)
T 3tcm_A 180 NEKDGILVPIPQYPLYSASIALHGG-------------ALVPYYLNESTGWG----------LETSDVKKQLEDARSRGI 236 (500)
T ss_dssp STTEEEEEEESCCTHHHHHHHHTTC-------------EEEEEECBTTTTSB----------CCHHHHHHHHHHHHHTTC
T ss_pred CCCCEEEEeCCCcHhHHHHHHHcCC-------------EEEEEecccccCCC----------CCHHHHHHHHHHHHhcCC
Confidence 1568899999999887544333322 22333332211111 3688888888652 22
Q ss_pred cEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccc--ccccc----cccCC-C--ccee---e
Q psy8199 421 KIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTG--KFFAC----EHAEI-W--PDFL---C 488 (965)
Q Consensus 421 ~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G--~~~~~----~~~~~-~--pDiv---t 488 (965)
++.+|++.. ++|++|.+. +.+.+++|.++|++||+++|+||+|.++...+ .+..+ ..++. . .+++ +
T Consensus 237 ~~k~ivl~~-p~NPtG~~~-s~~~l~~i~~la~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S 314 (500)
T 3tcm_A 237 NVRALVVIN-PGNPTGQVL-AEENQYDIVKFCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQS 314 (500)
T ss_dssp EEEEEEEES-SCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEE
T ss_pred CceEEEEEC-CCCCCcccC-CHHHHHHHHHHHHHcCCEEEEecCccccccCCCCCCCcHHHHHHHhccccCCeEEEEEec
Confidence 455555444 488999766 67779999999999999999999998764432 12221 12221 1 2233 7
Q ss_pred ecccc-C-CCcccceeeee---cHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHH-----------HHh-cccHH
Q psy8199 489 LSKGI-T-GGYLPLSLVMT---TDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLE-----------IFN-KDNIL 551 (965)
Q Consensus 489 ~sK~l-~-gG~~pig~v~~---~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~-----------~~~-~~~~~ 551 (965)
|||++ | .| +++|++++ ++++++.+.. ....+++.++++++++.++|+ ..+ .+.+.
T Consensus 315 ~SK~~~g~~G-~R~G~~~~~~~~~~~~~~l~~-------~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 386 (500)
T 3tcm_A 315 VSKGYYGECG-KRGGYFEITGFSAPVREQIYK-------IASVNLCSNITGQILASLVMNPPKASDESYASYKAEKDGIL 386 (500)
T ss_dssp SSSTTTCCGG-GCCEEEEEESCCTTHHHHHHH-------HHHTTCCCCHHHHHHHHHHHSCCCSSSTHHHHHHHHHHHHH
T ss_pred CCccCCCCCc-cceEEEEEeCCCHHHHHHHHH-------HHhcccCCCHHHHHHHHHHhcCccccchhHHHHHHHHHHHH
Confidence 89998 3 25 89999988 8888888765 123456678889888888875 222 13456
Q ss_pred HHHHHHHHHHHHHHHcccCCCceeeeeceeEEEEEEEeecCccch--------hhHHHHH-HHHHHHcCcEEeec-----
Q psy8199 552 QRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQI--------ETFSKKF-FVAALKNELLLRPI----- 617 (965)
Q Consensus 552 ~~~~~~~~~l~~~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~--------~~~~~~~-~~~l~~~Gi~~~~~----- 617 (965)
++++++.+++.+.|+++ |++..+.++|.|+.+.-. ..+... ......+ .+.+.++||++.|+
T Consensus 387 ~~l~~~~~~l~~~L~~~---~g~~~~~~~g~~~~~~~~-~lp~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~ 462 (500)
T 3tcm_A 387 ASLARRAKALEHAFNKL---EGITCNEAEGAMYVFPQI-CLPQKAIEAAKAANKAPDAFYALRLLESTGIVVVPGSGFGQ 462 (500)
T ss_dssp HHHHHHHHHHHHHHHTS---TTEECCCCCBTTEECCEE-CCCHHHHHHHHHHTSCHHHHHHHHHHHHHCEECEESTTTCC
T ss_pred HHHHHHHHHHHHHHhcC---CCcEEecCCeEEEEeeee-cCchhhHHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCC
Confidence 67777778888877664 677777777776655321 111000 0001122 35566789999873
Q ss_pred ---CCEEEEeCCcccCHHHHHHHHHhhhcccc
Q psy8199 618 ---GNTVYLMPPYILNKNEIQHMTSAIFQTFN 646 (965)
Q Consensus 618 ---~~~lR~~p~~~~t~~~i~~~~~~l~~~~~ 646 (965)
.+++|++.. .++++++++++++.+...
T Consensus 463 ~~g~~~iRis~~--~~~e~i~~~i~~l~~~~~ 492 (500)
T 3tcm_A 463 VPGTWHFRCTIL--PQEDKIPAVISRFTVFHE 492 (500)
T ss_dssp CTTCCBEEEESC--SCTTTHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEEC--CCHHHHHHHHHHHHHHHH
Confidence 147999955 888899999999876543
|
| >3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=7.4e-19 Score=198.61 Aligned_cols=306 Identities=13% Similarity=0.051 Sum_probs=200.4
Q ss_pred cCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCc
Q psy8199 267 LFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNK 346 (965)
Q Consensus 267 ~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~ 346 (965)
.+.+.+++..+++.... . ..+....+.++...+++++++++.+ .+++++++||++|+..+++.+. .++
T Consensus 31 ~~~~~~~~~~~~~~~~~-~-~~~~y~~~~~~~~~~l~~~la~~~g--~~~~i~~~sG~~ai~~~~~~~~--------~~g 98 (389)
T 3acz_A 31 TFCFDSTQQGADLFMGK-G-EGHIYSRLGNPTVEQFEEMVCSIEG--AAGSAAFGSGMGAISSSTLAFL--------QKG 98 (389)
T ss_dssp BBCCSSHHHHHHHHTTC-S-SCCCBTTTCCHHHHHHHHHHHHHHT--CSEEEEESSHHHHHHHHHTTTC--------CTT
T ss_pred ceecCChHHHHHhhcCC-C-CCcccCCCCChHHHHHHHHHHHHhC--CCeEEEeCCHHHHHHHHHHHHh--------CCC
Confidence 35556665444433221 1 1223345678889999999999996 3488888999999999998663 256
Q ss_pred eEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEE
Q psy8199 347 KKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAII 426 (965)
Q Consensus 347 ~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii 426 (965)
++|++.++.||+....... ........+.+++. .|+++++++++ +++++|+
T Consensus 99 d~vl~~~~~y~~~~~~~~~---------~~~~~g~~~~~v~~-----------------~d~~~l~~~i~---~~~~~v~ 149 (389)
T 3acz_A 99 DHLIAGDTLYGCTVSLFTH---------WLPRFGIEVDLIDT-----------------SDVEKVKAAWK---PNTKMVY 149 (389)
T ss_dssp CEEEEESSCCHHHHHHHHH---------HHHHTTCEEEEECT-----------------TCHHHHHHTCC---TTEEEEE
T ss_pred CEEEEeCCCchHHHHHHHH---------HHHHcCCEEEEECC-----------------CCHHHHHHhcC---CCCeEEE
Confidence 8899999999885322100 00111123344443 26788888774 4678999
Q ss_pred EccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCccee--eeccccCCCcccc-eee
Q psy8199 427 IEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL--CLSKGITGGYLPL-SLV 503 (965)
Q Consensus 427 ~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDiv--t~sK~l~gG~~pi-g~v 503 (965)
+|+ ++|++|.+.+ +++|.++|++||+++|+||+|+++. .+.. .+..+|++ +++|.++|++.++ |++
T Consensus 150 ~~~-~~nptG~~~~----l~~i~~~~~~~~~~livD~~~~~~~-~~~~-----~~~~~di~~~S~sK~~~~~~~~~~G~v 218 (389)
T 3acz_A 150 LES-PANPTCKVSD----IKGIAVVCHERGARLVVDATFTSPC-FLKP-----LELGADIALHSVSKYINGHGDVIGGVS 218 (389)
T ss_dssp EES-SCTTTCCCCC----HHHHHHHHHHHTCEEEEECTTTCTT-TCCG-----GGTTCSEEEEETTTTTTCSSCCCCEEE
T ss_pred EEC-CCCCCCeecC----HHHHHHHHHHcCCEEEEECCCcccc-ccCc-----cccCCeEEEECChhhccCCCCceeEEE
Confidence 999 8999999887 9999999999999999999998542 2222 23458888 6899998865787 999
Q ss_pred eecH-HHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcc-----------cCC
Q psy8199 504 MTTD-KIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSL-----------ITH 571 (965)
Q Consensus 504 ~~~~-~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l-----------~~~ 571 (965)
++++ ++++.+.. .....+.+.+|..++++++.|+.+. ...++..++.+.+.+.|++. ..+
T Consensus 219 ~~~~~~~~~~l~~------~~~~~g~~~~~~~~~~~~~~l~~l~--~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~ 290 (389)
T 3acz_A 219 SAKTAEDIATIKF------YRKDAGSLMAPMDAFLCARGMKTLP--IRMQIHMENGLKVAKFLEQHEKIVKVNHPGLESF 290 (389)
T ss_dssp EESSHHHHHHHHH------HHHHHCCCCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHHHCTTEEEEECTTSTTS
T ss_pred EECcHHHHHHHHH------HHHhcCCCCCHHHHHHHHcCccHHH--HHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCC
Confidence 9998 88887754 1211233468888888888886542 12444555666666666543 112
Q ss_pred Ccee----eeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEee---c---------------------------
Q psy8199 572 PKII----NFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRP---I--------------------------- 617 (965)
Q Consensus 572 ~~i~----~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~---~--------------------------- 617 (965)
|++. ..++.|.++.+.+. + .....+.+.+.|+++++ +
T Consensus 291 ~~~~~~~~~~~g~g~~~~~~l~--~-------~~~~~~~l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~ 361 (389)
T 3acz_A 291 PGHDIAKKQMTGYGSTFLFEMK--S-------FEAAKKLMEHLKVCTLAVSLGCVDTLIEHPASMTHAAVPENIMRKQGI 361 (389)
T ss_dssp TTHHHHHHHCSSCCSEEEEEES--S-------HHHHHHHHTTCSSSEEBSCCCCSSCEEECTTTTTTSSSCHHHHHHHTC
T ss_pred ccHHHHHhhCCCCCeEEEEEEC--C-------HHHHHHHHHhCCCcEECcCCCCcccEeeCCcccccccCCHHHHHhcCC
Confidence 2211 12456889998874 1 22344556677876654 1
Q ss_pred -CCEEEEeCCcccCHHHHHHHHHhh
Q psy8199 618 -GNTVYLMPPYILNKNEIQHMTSAI 641 (965)
Q Consensus 618 -~~~lR~~p~~~~t~~~i~~~~~~l 641 (965)
.+.+|+++....+++.++.+.+++
T Consensus 362 ~~~~iRlsvg~~~~~~li~~l~~al 386 (389)
T 3acz_A 362 TPELVRISVGIENVDDIIADLKQAL 386 (389)
T ss_dssp CTTEEEEECCSSCHHHHHHHHHHHH
T ss_pred CcCeEEEEeccCCHHHHHHHHHHHH
Confidence 268999987775555555555444
|
| >4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=99.82 E-value=4.8e-20 Score=210.29 Aligned_cols=333 Identities=9% Similarity=0.007 Sum_probs=207.5
Q ss_pred cccccccccchhccCC-CCCHHHHHHHHHHHhhc-cccccCCCCcHHHHHHHHHHHhhcCCC-----CCeEEE--cCChh
Q psy8199 254 KRYLDAISSWWVNLFG-HSNSYINKALKNQLNKL-EHVMLSNLTHKPVIKLSEKLSSLTQYK-----LGHCFY--GSDGA 324 (965)
Q Consensus 254 ~~ylD~~~~~~~~~lG-h~~p~v~~av~~~~~~~-~~~~~~~~~~~~~~~la~~l~~~~~~~-----~~~v~~--~~sGs 324 (965)
..+|||.+|. +++ ..+|.+.++++++.... ..|....+..+.+..+++.+. +.. .+++.+ +++|+
T Consensus 41 ~~~i~l~~g~---~~d~~~~~~v~~a~~~a~~~~~~~y~~~~g~~~lr~~ia~~~~---~~~~~~~~~~~i~~~~~~~g~ 114 (409)
T 4eu1_A 41 KRKVNLSIGV---YRDDADQPFVLECVKQATLGTNMDYAPVTGIASFVEEAQKLCF---GPTCAALRDGRIASCQTLGGT 114 (409)
T ss_dssp SSCEECCCSS---CCCTTSCCCCCHHHHTCCCCSCCCCCCTTCCHHHHHHHHHHHH---CSSCHHHHTTCEEEEEESHHH
T ss_pred cCceeeeeeE---EECCCCCEeecHHHHhcCccccccCCCCCCcHHHHHHHHHHHc---CCCchhhccCceeeeecccch
Confidence 4688888763 323 35777888888773222 112112222334444444442 222 467754 99999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCC-CCCCCCCCCChhHH
Q psy8199 325 SAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTP-DSRNINKGNSANEI 403 (965)
Q Consensus 325 eA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 403 (965)
+|++.+..+++.+. .++++|++.+++|+++.......+. .+..+|.. ...+.
T Consensus 115 ga~~~~~~~~~~~~-----~~gd~Vlv~~p~y~~~~~~~~~~g~-------------~~~~~~~~~~~~~~--------- 167 (409)
T 4eu1_A 115 GALRIGGDLLNRFV-----ANCNRIYGPDVGYPNHESIFAKAGM-------------ELTPYSYYDPATKG--------- 167 (409)
T ss_dssp HHHHHHHHHGGGTS-----SSCCEEEEESSCCTHHHHHHHHTTC-------------EEEEECCEETTTTE---------
T ss_pred HHHHHHHHHHHHhc-----CCCCEEEEeCCCcHhHHHHHHHcCC-------------eEEEEEeecCcCCc---------
Confidence 99999877665431 2458999999999887433332221 23334431 11111
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccc---ccccc-c
Q psy8199 404 ARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK---FFACE-H 479 (965)
Q Consensus 404 ~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~---~~~~~-~ 479 (965)
.|+++|++++++.+...+++++.. ++|++|.+. +.+.+++|.++|++||+++|+||+|.+|+..+. ..... .
T Consensus 168 --~d~~~l~~~l~~~~~~~~~i~~~~-p~NPtG~~~-~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~ 243 (409)
T 4eu1_A 168 --LNLAGMLECLDKAPEGSVILVHAC-AHNPTGVDP-THDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLDYDAFVPRHL 243 (409)
T ss_dssp --ECHHHHHHHHHHSCTTCEEEEESS-SCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHH
T ss_pred --CcHHHHHHHHHhCCCCcEEEEECC-CCCCCCCCC-CHHHHHHHHHHHHhCCcEEEEeccccccccCCcccchHHHHHH
Confidence 268899999976544556666544 489999766 777899999999999999999999999876552 22222 2
Q ss_pred cCCCccee---eeccccCCCcccceee---eecHH----HHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHH----
Q psy8199 480 AEIWPDFL---CLSKGITGGYLPLSLV---MTTDK----IYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIF---- 545 (965)
Q Consensus 480 ~~~~pDiv---t~sK~l~gG~~pig~v---~~~~~----i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~---- 545 (965)
.+..++++ +|||.++..++++|++ +++++ +++.+.. +...++++.++++++++.++|+..
T Consensus 244 ~~~~~~~i~~~S~SK~~g~~G~riG~~~~v~~~~~~~~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 317 (409)
T 4eu1_A 244 VDMVPNLIVAQSFSKNFGLYGHRCGALHISTASAEEAKRLVSQLAL------LIRPMYNNPPLYGAWVVSSILKDPQLTA 317 (409)
T ss_dssp HTTSSCCEEEEECTTTSSCGGGCCEEEEEECSSHHHHHHHHHHHHH------HHHHHHSSCCHHHHHHHHHHHHCHHHHH
T ss_pred HhhCCcEEEEecCcccccCccCCceEEEEEeCCHHHHHHHHHHHHH------HHhhhcCCCChHHHHHHHHHhCCHHHHH
Confidence 25556765 7899987422899995 66777 5554433 223455667889999998888632
Q ss_pred ---h-cccHHHHHHHHHHHHHHHHHcccCCCc-eeeeeceeEEEEEEEeecCccchhhHHHHHHHHH-HHcCcEEeecCC
Q psy8199 546 ---N-KDNILQRISQDMKKITKALTSLITHPK-IINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAA-LKNELLLRPIGN 619 (965)
Q Consensus 546 ---~-~~~~~~~~~~~~~~l~~~L~~l~~~~~-i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l-~~~Gi~~~~~~~ 619 (965)
+ -+...++++++.+++.+.|+++. .|. +....+.|.++.+.-. + . .+...+ .++||++.|++
T Consensus 318 ~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~--~-------~-~~~~~ll~~~gv~v~p~~- 385 (409)
T 4eu1_A 318 LWKKELKQMSSRIAEVRKRLVSELKACG-SVHDWSHIERQVGMMAYTGL--T-------R-EQVELLRSEYHIYMTLNG- 385 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCSCCHHHHHSCSSEEECCC--C-------H-HHHHHHHHHHCEECCTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCcceecCCceEEEEeCC--C-------H-HHHHHHHHcCCEEEcCCC-
Confidence 1 23456677778888888887651 111 3434455555544211 1 1 233444 46799999863
Q ss_pred EEEEeCCcccCHHHHHHHHHhhhcc
Q psy8199 620 TVYLMPPYILNKNEIQHMTSAIFQT 644 (965)
Q Consensus 620 ~lR~~p~~~~t~~~i~~~~~~l~~~ 644 (965)
||+.. ..++++++++++++.++
T Consensus 386 --Ri~~~-~~~~~~i~~~~~~l~~~ 407 (409)
T 4eu1_A 386 --RAAVS-GLNSTNVEYVSQAIHNV 407 (409)
T ss_dssp --EEEGG-GCCTTTHHHHHHHHHHH
T ss_pred --EEEEE-ecCHhhHHHHHHHHHHH
Confidence 66653 46677799999887653
|
| >3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.8e-19 Score=201.78 Aligned_cols=311 Identities=12% Similarity=0.058 Sum_probs=193.9
Q ss_pred CHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEE
Q psy8199 272 NSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFIC 351 (965)
Q Consensus 272 ~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~ 351 (965)
+|++.+|+.+.+.. ...++.+...+++++++++++ .+..++++||++|+..+++++... ++..+|+
T Consensus 28 ~p~v~~ai~~~~~~-----~~~~~~~~~~~l~~~la~~~~--~~~~i~~~~g~~a~~~a~~~~~~~-------g~~~vvi 93 (359)
T 3pj0_A 28 LTEALQNIDDNLES-----DIYGNGAVIEDFETKIAKILG--KQSAVFFPSGTMAQQIALRIWADR-------KENRRVA 93 (359)
T ss_dssp HHHHTTTSCTTCBC-----CBTTBSHHHHHHHHHHHHHHT--CSEEEEESCHHHHHHHHHHHHHHH-------HTCCEEE
T ss_pred CHHHHHHHHhhccc-----CcccCCHHHHHHHHHHHHHhC--CCcEEEeCCHHHHHHHHHHHHHhc-------CCCcEEE
Confidence 56777777663322 123456778899999999985 456677799999999999988762 4444666
Q ss_pred EcCCccCCcccc--c-cccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEc
Q psy8199 352 LQNSYHGETLGA--L-AVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIE 428 (965)
Q Consensus 352 ~~~~yHg~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~e 428 (965)
.++.+|.+.... . ...+ .....+|.+ .+. .|+++|+++ .+++++|+++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~--~~~-----------~d~~~l~~~----~~~~~~v~~~ 144 (359)
T 3pj0_A 94 YHPLSHLEIHEQDGLKELQQ------------ITPLLLGTA--NQL-----------LTIDDIKSL----REPVSSVLIE 144 (359)
T ss_dssp ECTTCHHHHSSTTHHHHHHC------------CEEEECSCT--TSC-----------CCHHHHHTC----SSCCSEEEEE
T ss_pred EeccceeeehhcchHHHhcC------------ceEEecCCc--CCC-----------cCHHHHHhc----cCCceEEEEE
Confidence 666666542211 1 1111 122233321 111 267777765 3457788888
Q ss_pred cccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCc--ccccccccccCCCccee--eeccccCCCcccceeee
Q psy8199 429 PLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGR--TGKFFACEHAEIWPDFL--CLSKGITGGYLPLSLVM 504 (965)
Q Consensus 429 p~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr--~G~~~~~~~~~~~pDiv--t~sK~l~gG~~pig~v~ 504 (965)
+ ++|++|...++.+++++|.++|++||+++|+||+|..+.. .|. ....+....|++ ++||+++++ .. |+++
T Consensus 145 ~-p~n~~~G~~~~~~~l~~l~~~~~~~~~~li~D~a~~~~~~~~~~~--~~~~~~~~~d~~~~s~sK~~~~~-~g-g~~~ 219 (359)
T 3pj0_A 145 L-PQREIGGQLPAFEELEKISEYCHEQGISLHLDGARLWEITPFYQK--SAEEICALFDSVYVSFYKGIGGI-AG-AILA 219 (359)
T ss_dssp S-SBGGGTSBCCCHHHHHHHHHHHHHHTCEEEEEETTCGGGHHHHTC--CHHHHHTTCSEEEEESSSTTCCS-SC-EEEE
T ss_pred e-cccCCCcccCCHHHHHHHHHHHHHcCCEEEEECcchhcchhhhCC--CHHHhhccCCEEEEeccccCCCc-ce-EEEE
Confidence 7 6777755666889999999999999999999998753210 111 011111234666 788988775 23 6778
Q ss_pred ecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcccCCCceeee--eceeE
Q psy8199 505 TTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINF--RQKGM 582 (965)
Q Consensus 505 ~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v--~g~G~ 582 (965)
+++++++.+..- .....++++..++ .++++.++|+... +..++..++.+++.+.|+++ +++... +..+.
T Consensus 220 ~~~~l~~~~~~~---~~~~~~~~~~~~~-~~~a~~~~l~~~~--~~~~~~~~~~~~l~~~L~~~---~g~~~~~~~~~~~ 290 (359)
T 3pj0_A 220 GNDDFVQEAKIW---KRRYGGDLISLYP-YILSADYYFEKRI--GKMAEYFEAAKGLAERFNSC---SGVKTVPEVPVSN 290 (359)
T ss_dssp ECHHHHHHHHHH---HHHTTCCCSCCHH-HHHHHHHHHHHHG--GGHHHHHHHHHHHHHHHHTS---TTEEEESSSCSSS
T ss_pred CCHHHHHHHHHH---HHHhCCCcchhHH-HHHHHHHHHHHHH--HHhHHHHHHHHHHHHHHhhC---CCceeeccCCcce
Confidence 899998877530 0011223333333 4445556676442 34566777888888888764 555432 35566
Q ss_pred EEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecC-------CEEEEeCC---cccCHHHHHHHHHhhhc
Q psy8199 583 IWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG-------NTVYLMPP---YILNKNEIQHMTSAIFQ 643 (965)
Q Consensus 583 ~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~-------~~lR~~p~---~~~t~~~i~~~~~~l~~ 643 (965)
++.+.+. .. .......+.+.|.++||+++|+. +++|++.. ...+.++++++++++.+
T Consensus 291 ~~~~~~~-~~---~~~~~~~l~~~l~~~GV~v~~g~~~~~~~~~~~r~~i~~~~~~~~~e~l~~~l~~l~~ 357 (359)
T 3pj0_A 291 MFHVYFE-NS---ADEIGAILTKIQDETGVGISGYLQEKSADVCAFEVSVGDAFAEIPAKNLELVFRCLEK 357 (359)
T ss_dssp EEEEEES-SC---HHHHHHHHHHHHHHHCEECCSCCEEEETTEEEEEEECCTTGGGSCHHHHHHHHHHHHH
T ss_pred EEEEEec-Cc---cchhHHHHHHHHHhcCcEecCCccccCCCceEEEEEecCccccCCHHHHHHHHHHHHh
Confidence 6666664 11 11224567888999999998742 46888542 34678888888887754
|
| >1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=6.1e-19 Score=196.35 Aligned_cols=328 Identities=12% Similarity=0.087 Sum_probs=208.3
Q ss_pred cccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHH
Q psy8199 254 KRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKM 333 (965)
Q Consensus 254 ~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~ 333 (965)
++++||.++.. ++ .+|++.+++.+..... ...++.+...+|.++++++++ .+.+++++||++|+..+++.
T Consensus 3 ~~~i~~~~~~~--~~--p~~~~~~a~~~~~~~~----~~y~~~~~~~~l~~~la~~~g--~~~~~~~~~gt~a~~~~~~~ 72 (347)
T 1jg8_A 3 HMMIDLRSDTV--TK--PTEEMRKAMAQAEVGD----DVYGEDPTINELERLAAETFG--KEAALFVPSGTMGNQVSIMA 72 (347)
T ss_dssp --CEECSCGGG--CC--CCHHHHHHHHTCCCCC----GGGTCCHHHHHHHHHHHHHHT--CSEEEEESCHHHHHHHHHHH
T ss_pred ceEEEeccccC--CC--CCHHHHHHHhcCCCCC----cccCCChHHHHHHHHHHHHhC--CceEEEecCcHHHHHHHHHH
Confidence 46688877643 22 5788888886543211 122346677899999999985 56889999999999999876
Q ss_pred HHHHHHhcCCCCceEEEEEcCCccCCcc-c-cccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHH
Q psy8199 334 SFHYWYNKGFLNKKKFICLQNSYHGETL-G-ALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDL 411 (965)
Q Consensus 334 a~~~~~~~g~~~~~~vi~~~~~yHg~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l 411 (965)
+. .++++|++.+++|..... . .....| .....+ .+. .+. .|+++|
T Consensus 73 ~~--------~~gd~Vl~~~~~~~~~~~~~~~~~~~g------------~~~~~v-~~~-~~~-----------~d~~~l 119 (347)
T 1jg8_A 73 HT--------QRGDEVILEADSHIFWYEVGAMAVLSG------------VMPHPV-PGK-NGA-----------MDPDDV 119 (347)
T ss_dssp HC--------CTTCEEEEETTCHHHHSSTTHHHHHTC------------CEEEEE-CEE-TTE-----------ECHHHH
T ss_pred hc--------CCCCEEEEcCcchhhhccccchhhccC------------eEEEEe-cCC-CCc-----------cCHHHH
Confidence 53 256789998887643211 1 111111 112222 110 010 267888
Q ss_pred HHHHHhC---CCcEEEEEEccccccCC-CcccCChHHHHHHHHHHHhcCCeEEEeccccCCCc---ccccccccccCCCc
Q psy8199 412 EILLKKN---HNKIAAIIIEPLVQCAG-GMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGR---TGKFFACEHAEIWP 484 (965)
Q Consensus 412 e~~l~~~---~~~~aaii~ep~v~~~~-G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr---~G~~~~~~~~~~~p 484 (965)
++++++. ..++++|++++ ++|++ |. ..+.+.+++|.++|++||+++|+||+|. ++. .|. ....+....
T Consensus 120 ~~~i~~~~~~~~~~~~v~~~~-~~npt~G~-~~~~~~l~~i~~~a~~~~~~li~D~a~~-~~~~~~~~~--~~~~~~~~~ 194 (347)
T 1jg8_A 120 RKAIRPRNIHFPRTSLIAIEN-THNRSGGR-VVPLENIKEICTIAKEHGINVHIDGARI-FNASIASGV--PVKEYAGYA 194 (347)
T ss_dssp HHHSCCSCTTSCCEEEEEEES-SBTTTTSB-CCCHHHHHHHHHHHHHHTCEEEEEETTH-HHHHHHHCC--CHHHHHHTC
T ss_pred HHHhccccccccCceEEEEec-cccccCCc-cCcHHHHHHHHHHHHHCCCEEEeehhhh-hcchhhcCC--ChHHhcccc
Confidence 8888631 12578888888 89998 65 4578889999999999999999999874 311 111 111111123
Q ss_pred ce--eeeccccCCCccccee-eeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q psy8199 485 DF--LCLSKGITGGYLPLSL-VMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKI 561 (965)
Q Consensus 485 Di--vt~sK~l~gG~~pig~-v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l 561 (965)
|. +++||++++ |+|+ +++++++++.+..- . ...++++..+++.++++.++|+...+ ..++..++.+++
T Consensus 195 d~~~~s~sK~l~~---~~G~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~l 265 (347)
T 1jg8_A 195 DSVMFCLSKGLCA---PVGSVVVGDRDFIERARKA---R-KMLGGGMRQAGVLAAAGIIALTKMVD--RLKEDHENARFL 265 (347)
T ss_dssp SEEEEESSSTTCC---SSCEEEEECHHHHHHHHHH---H-HHHTCCCSSTHHHHHHHHHHHHHSST--THHHHHHHHHHH
T ss_pred cEEEEecccccCC---CceEEEEcCHHHHHHHHHH---H-HHcCCchhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 43 468999865 4674 56688787665320 0 01244555677777888888875322 234445677888
Q ss_pred HHHHHcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecC-CEEEEeCCcccCHHHHHHHHHh
Q psy8199 562 TKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG-NTVYLMPPYILNKNEIQHMTSA 640 (965)
Q Consensus 562 ~~~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~-~~lR~~p~~~~t~~~i~~~~~~ 640 (965)
.+.|+++ ... +....+.|.++.+.+. ..+ .....+.+.|.++||.+++.+ +.+|++++..++++++++++++
T Consensus 266 ~~~L~~~-~~~-~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~l~~~gi~v~~~~~~~iRl~~~~~~~~e~i~~~~~~ 338 (347)
T 1jg8_A 266 ALKLKEI-GYS-VNPEDVKTNMVILRTD-NLK----VNAHGFIEALRNSGVLANAVSDTEIRLVTHKDVSRNDIEEALNI 338 (347)
T ss_dssp HHHHHHH-TCB-CCGGGCCSSEEEEECT-TSS----SCHHHHHHHHHHHTEECEEEETTEEEEECCTTSCHHHHHHHHHH
T ss_pred HHHHHhc-Cce-eccCCCcceEEEEEcc-ccc----CCHHHHHHHHHHCCCEEecCCCCeEEEEeCCCCCHHHHHHHHHH
Confidence 8888765 221 1112345667666653 111 113467788889999998864 7899999888999999999998
Q ss_pred hhccc
Q psy8199 641 IFQTF 645 (965)
Q Consensus 641 l~~~~ 645 (965)
+.+.+
T Consensus 339 l~~~l 343 (347)
T 1jg8_A 339 FEKLF 343 (347)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87653
|
| >3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.7e-19 Score=208.36 Aligned_cols=328 Identities=11% Similarity=0.034 Sum_probs=208.5
Q ss_pred CCCHHHHHHHHHHHhhccccccCCC-----CcHHHHHHHHHHHhhcCCC--CCeEEEcCChhHHHHHHHHHHHHHHHh-c
Q psy8199 270 HSNSYINKALKNQLNKLEHVMLSNL-----THKPVIKLSEKLSSLTQYK--LGHCFYGSDGASAVEVALKMSFHYWYN-K 341 (965)
Q Consensus 270 h~~p~v~~av~~~~~~~~~~~~~~~-----~~~~~~~la~~l~~~~~~~--~~~v~~~~sGseA~~~Al~~a~~~~~~-~ 341 (965)
++++.+.+++.+++......+...+ ..+...+++++++++++.. .+.+++++||++|+..|+++++.+... .
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~la~~~g~~~~~~~~~~~~ggt~a~~~a~~a~~~~~~~~~ 154 (497)
T 3mc6_A 75 HGGDDLIHLQTIAYEKYCVANQLHPDVFPAVRKMESEVVSMVLRMFNAPSDTGCGTTTSGGTESLLLACLSAKMYALHHR 154 (497)
T ss_dssp CCCHHHHHHHHHHHHHTSSCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCTTTCCEEEESSHHHHHHHHHHHHHHHHHHHS
T ss_pred CCchHHHHHHHHHHHHHhhcCCCCcccChHHHHHHHHHHHHHHHHhCCCCCCCeEEEcCcHHHHHHHHHHHHHHHHHhcC
Confidence 3568999999998877432221111 2344567888888888755 568999999999999999999876432 2
Q ss_pred CCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCc
Q psy8199 342 GFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNK 421 (965)
Q Consensus 342 g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~ 421 (965)
|. .+++|++..++|+++. .+....| ..++.+|.....+. .|+++|++++. ++
T Consensus 155 g~-~~~~Vi~~~~~h~~~~-~~~~~~G------------~~~~~v~~~~~~~~-----------~d~~~l~~~i~---~~ 206 (497)
T 3mc6_A 155 GI-TEPEIIAPVTAHAGFD-KAAYYFG------------MKLRHVELDPTTYQ-----------VDLGKVKKFIN---KN 206 (497)
T ss_dssp CC-SSCEEEEETTSCHHHH-HHHHHSC------------CEEEEECBCTTTCS-----------BCTTTTGGGCC---SS
T ss_pred CC-CCceEEEeCCccHHHH-HHHHHcC------------CeEEEEecCcccCc-----------CCHHHHHHHHh---hC
Confidence 32 3467888777765542 2222222 13445554321111 25677887774 35
Q ss_pred EEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcc-------cc--cccccccCCCcceeee--c
Q psy8199 422 IAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRT-------GK--FFACEHAEIWPDFLCL--S 490 (965)
Q Consensus 422 ~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~-------G~--~~~~~~~~~~pDivt~--s 490 (965)
+++|+++. +++++|.+.+ +++|+++|++||+++|+||+|+|+.+. |. .+.....| .|++++ +
T Consensus 207 ~~~v~~~~-p~nptG~~~~----l~~i~~la~~~g~~livD~a~~~~~~~f~~~~~~~~~~~~~~~~~g--~d~~~~s~~ 279 (497)
T 3mc6_A 207 TVLLVGSA-PNFPHGIADD----IEGLGKIAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLDFRVPG--VTSISCDTH 279 (497)
T ss_dssp EEEEEEET-TCTTTCCCCS----CTTTTTHHHHTTCCEEEETTTTHHHHGGGTTTTCCSCCCCSTTSTT--CCEEEEETT
T ss_pred CEEEEEEC-CCCCCCcCCC----HHHHHHHHHHhCCEEEEECcchhhhhhhhhhhcccCCccccccCCC--CcEEEECch
Confidence 78888888 7899999877 889999999999999999999865432 11 12233334 477765 4
Q ss_pred cccCCCcccceeeeecHHHHHhhhccCCcccccccC-----CCCC--CHHHHHHHHHHHHHHhc---ccHHHHHHHHHHH
Q psy8199 491 KGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSH-----SYSG--NPLACCAALATLEIFNK---DNILQRISQDMKK 560 (965)
Q Consensus 491 K~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~-----t~~~--~~~~~aaa~a~L~~~~~---~~~~~~~~~~~~~ 560 (965)
|.+.+| .++|+++++++.+...... ......++ ++.+ +....++..++++.+.. .+..++..++.++
T Consensus 280 K~l~~~-~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~ 356 (497)
T 3mc6_A 280 KYGFAP-KGSSVIMYRNSDLRMHQYY--VNPAWTGGLYGSPTLAGSRPGAIVVGCWATMVNMGENGYIESCQEIVGAAMK 356 (497)
T ss_dssp TTTCCC-SSCEEEECSSHHHHTTTSC--CBTTCTTSCBCCSSSCSSCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcCCC-CCceeEEecCHHHHhhhhc--ccccccCCCcCCcCcccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 876666 6899999887765543210 00001111 1111 12223444455554443 3456777788888
Q ss_pred HHHHHHcccCCCceeee-eceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecC--CEEEEeCCcccCHHHHHHH
Q psy8199 561 ITKALTSLITHPKIINF-RQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG--NTVYLMPPYILNKNEIQHM 637 (965)
Q Consensus 561 l~~~L~~l~~~~~i~~v-~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~--~~lR~~p~~~~t~~~i~~~ 637 (965)
+.+.|++. .|++..+ .+.+.++.+... . .....+.+.|.++||.+.... +.+|++++ .++.++++++
T Consensus 357 l~~~L~~~--~~g~~~~~~~~~~~v~~~~~--~-----~~~~~l~~~L~~~Gi~v~~~~~~~~~ri~~~-~~t~e~i~~~ 426 (497)
T 3mc6_A 357 FKKYIQEN--IPDLDIMGNPRYSVISFSSK--T-----LNIHELSDRLSKKGWHFNALQKPVALHMAFT-RLSAHVVDEI 426 (497)
T ss_dssp HHHHHHHS--CTTCEECSCCCSSEEEEECT--T-----TTHHHHHHHHHTTTCBCEECCSSCCEEEECC-TTTTCTHHHH
T ss_pred HHHHHHhc--CCCEEEecCCCeeEEEEeCC--C-----CCHHHHHHHHHhCCEEEecCCCCCeEEEEEe-CCCHHHHHHH
Confidence 88888762 2444433 355666666432 1 114568889999999887643 56899988 7899999999
Q ss_pred HHhhhccc
Q psy8199 638 TSAIFQTF 645 (965)
Q Consensus 638 ~~~l~~~~ 645 (965)
++++.+++
T Consensus 427 ~~~L~~~l 434 (497)
T 3mc6_A 427 CDILRTTV 434 (497)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99887654
|
| >3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=3.1e-19 Score=202.32 Aligned_cols=313 Identities=14% Similarity=0.126 Sum_probs=204.6
Q ss_pred CHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEE
Q psy8199 272 NSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFIC 351 (965)
Q Consensus 272 ~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~ 351 (965)
+|++.+++.+++.... + ....+...++.+.++++++ .+++++++||++|++.+++.+.. .++++|++
T Consensus 35 ~~~~~~a~~~~~~~~~-~---~~~~~~~~~l~~~la~~~~--~~~~i~~~~gt~al~~~l~~~~~-------~~gd~vl~ 101 (391)
T 3dr4_A 35 DGNERDYVLECMDTTW-I---SSVGRFIVEFEKAFADYCG--VKHAIACNNGTTALHLALVAMGI-------GPGDEVIV 101 (391)
T ss_dssp CSSHHHHHHHHHHHTC-C---SSCSHHHHHHHHHHHHHHT--CSEEEEESSHHHHHHHHHHHHTC-------CTTCEEEE
T ss_pred CHHHHHHHHHHHHcCC-c---cCCChHHHHHHHHHHHHhC--CCcEEEeCCHHHHHHHHHHHcCC-------CCcCEEEE
Confidence 3667788877776531 1 1356888999999999995 45999999999999999997721 35688999
Q ss_pred EcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEcccc
Q psy8199 352 LQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLV 431 (965)
Q Consensus 352 ~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v 431 (965)
.+++|++........+. .+.+++.....+. .|+++|++++. +++++|++
T Consensus 102 ~~~~~~~~~~~~~~~g~-------------~~~~~~~~~~~~~-----------~d~~~l~~~~~---~~~~~v~~---- 150 (391)
T 3dr4_A 102 PSLTYIASANSVTYCGA-------------TPVLVDNDPRTFN-----------LDAAKLEALIT---PRTKAIMP---- 150 (391)
T ss_dssp ESSSCTHHHHHHHHTTC-------------EEEEECBCTTTCS-----------BCGGGSGGGCC---TTEEEECC----
T ss_pred CCCchHHHHHHHHHCCC-------------EEEEEecCccccC-----------cCHHHHHHhcC---CCceEEEE----
Confidence 99999987544333221 2334443211111 15677777664 45666663
Q ss_pred ccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcceeeec----cccCCCcccceeeeec-
Q psy8199 432 QCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS----KGITGGYLPLSLVMTT- 506 (965)
Q Consensus 432 ~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~s----K~l~gG~~pig~v~~~- 506 (965)
.+++|...+ +++|.++|++||+++|+||+|+ +|.. +.-...+..+|++++| |++++| +.|+++++
T Consensus 151 ~n~tG~~~~----~~~i~~l~~~~~~~li~D~a~~-~g~~---~~~~~~~~~~di~~~S~s~~K~l~~g--~gg~~~~~~ 220 (391)
T 3dr4_A 151 VHLYGQICD----MDPILEVARRHNLLVIEDAAEA-VGAT---YRGKKSGSLGDCATFSFFGNAIITTG--EGGMITTND 220 (391)
T ss_dssp BCGGGCCCC----HHHHHHHHHHTTCEEEEECTTC-TTCE---ETTEETTSSSSEEEEECBTTSSSCCB--SCEEEEESC
T ss_pred ECCCCChhh----HHHHHHHHHHcCCEEEEECccc-ccce---ECCeeecccCCEEEEECCCCCcCCcC--CeEEEEECC
Confidence 357787765 9999999999999999999997 3211 1112234446888777 999875 57777765
Q ss_pred HHHHHhhhc---cCCc-----ccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcccCCCceee--
Q psy8199 507 DKIYNSIYY---KNNI-----NIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIIN-- 576 (965)
Q Consensus 507 ~~i~~~~~~---~~~~-----~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~i~~-- 576 (965)
+++++.+.. .+.. .....+..+..+++.+++++..++.++ ...++.+++.+++.+.|+++ .......
T Consensus 221 ~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~l~aa~~~~~~~~~~--~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~ 297 (391)
T 3dr4_A 221 DDLAAKMRLLRGQGMDPNRRYWFPIVGFNYRMTNIQAAIGLAQLERVD--EHLAARERVVGWYEQKLARL-GNRVTKPHV 297 (391)
T ss_dssp HHHHHHHHHHHBTTCCTTSTTCCSSCCCBCBCCHHHHHHHHHHHHTHH--HHHHHHHHHHHHHHHHHGGG-TTSEECCCC
T ss_pred HHHHHHHHHHHhcCCCCCCcccccccccccCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhcC-CccccCcCC
Confidence 446554432 1100 001112335677888877777765443 46788888999999999876 2221111
Q ss_pred ---eeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec-------------------------CCEEEEeCCcc
Q psy8199 577 ---FRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-------------------------GNTVYLMPPYI 628 (965)
Q Consensus 577 ---v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-------------------------~~~lR~~p~~~ 628 (965)
....+.++.+.+. +. .......+.+.|.++||.++++ .+.+|+.++..
T Consensus 298 ~~~~~~~~~~~~i~~~--~~--~~~~~~~l~~~L~~~GI~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~ 373 (391)
T 3dr4_A 298 ALTGRHVFWMYTVRLG--EG--LSTTRDQVIKDLDALGIESRPVFHPMHIMPPYAHLATDDLKIAEACGVDGLNLPTHAG 373 (391)
T ss_dssp CTTSCCCCSSEEEEEC--SS--CSSCHHHHHHHHHHTTCCCEECCCCGGGSGGGGGGCCTTCHHHHHHHHHEEEECCCTT
T ss_pred CCCCcceeEEEEEEEC--Cc--cchhHHHHHHHHHHCCCceeecCCccccChhhhhcCcCCChHHHHHHhCeEEccCCCC
Confidence 1222334555553 10 0111446888999999988764 14799999999
Q ss_pred cCHHHHHHHHHhhhccc
Q psy8199 629 LNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 629 ~t~~~i~~~~~~l~~~~ 645 (965)
+++++++.+++++.+.+
T Consensus 374 ~t~edi~~~~~~l~~~l 390 (391)
T 3dr4_A 374 LTEADIDRVIAALDQVL 390 (391)
T ss_dssp CCHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 99999999999887643
|
| >3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.81 E-value=4.5e-19 Score=199.69 Aligned_cols=306 Identities=13% Similarity=0.177 Sum_probs=200.0
Q ss_pred HHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcC
Q psy8199 275 INKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQN 354 (965)
Q Consensus 275 v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~ 354 (965)
+.+++.+.+... ..++.+...++.+.++++++ .+++++++||++|++.+++.+.. .++++|++.++
T Consensus 21 ~~~~~~~~~~~~-----~~~~~~~~~~l~~~la~~~~--~~~~~~~~~gt~a~~~~~~~~~~-------~~gd~v~~~~~ 86 (374)
T 3uwc_A 21 YLNDLREFIKTA-----DFTLGAELEKFEKRFAALHN--APHAIGVGTGTDALAMSFKMLNI-------GAGDEVITCAN 86 (374)
T ss_dssp HHHHHHHHHHHT-----CCSSCHHHHHHHHHHHHHTT--CSEEEEESCHHHHHHHHHHHTTC-------CTTCEEEEESS
T ss_pred HHHHHHHHHHcC-----CcccChhHHHHHHHHHHHhC--CCcEEEeCCHHHHHHHHHHHcCC-------CCCCEEEECCC
Confidence 666666666543 23457788999999999995 45899999999999999987621 35689999999
Q ss_pred CccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccC
Q psy8199 355 SYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCA 434 (965)
Q Consensus 355 ~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~ 434 (965)
+||+........+ ..+..++.... +. .|+++|++++. +++++|+ | +|+
T Consensus 87 ~~~~~~~~~~~~g-------------~~~~~~~~~~~-~~-----------~d~~~l~~~~~---~~~~~v~--~--~n~ 134 (374)
T 3uwc_A 87 TFIASVGAIVQAG-------------ATPVLVDSENG-YV-----------IDPEKIEAAIT---DKTKAIM--P--VHY 134 (374)
T ss_dssp SCHHHHHHHHHTT-------------CEEEEECBCTT-SS-----------BCGGGTGGGCC---TTEEEEC--C--BCG
T ss_pred ccHHHHHHHHHcC-------------CEEEEEecCCC-CC-----------cCHHHHHHhCC---CCceEEE--E--eCC
Confidence 9998743332222 12334443211 11 15677777664 3566666 6 567
Q ss_pred CCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcceeeec----cccCC-CcccceeeeecH-H
Q psy8199 435 GGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS----KGITG-GYLPLSLVMTTD-K 508 (965)
Q Consensus 435 ~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~s----K~l~g-G~~pig~v~~~~-~ 508 (965)
+|.+.+ +++|.++|++||+++|+||+|+.+.. +.....+..+|++++| |++++ | ..|++++++ +
T Consensus 135 ~G~~~~----~~~i~~~~~~~~~~li~D~~~~~g~~----~~~~~~~~~~d~~~~s~~~~K~l~~~g--~~g~~~~~~~~ 204 (374)
T 3uwc_A 135 TGNIAD----MPALAKIAKKHNLHIVEDACQTILGR----INDKFVGSWGQFACFSLHPLKNLNVWS--DAGVIITHSDE 204 (374)
T ss_dssp GGCCCC----HHHHHHHHHHTTCEEEEECTTCTTCE----ETTEETTSSSSEEEEECSSSSSSCCSS--CCEEEEESCHH
T ss_pred cCCcCC----HHHHHHHHHHcCCEEEEeCCCccCce----eCCeeccccccEEEEeCCCCCcCCccc--eeEEEEeCCHH
Confidence 888776 99999999999999999999973322 3334455557999887 99987 6 267777654 5
Q ss_pred HHHhhhc---cCCcccc---cccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcccC-CCceeeee-ce
Q psy8199 509 IYNSIYY---KNNINIF---LHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLIT-HPKIINFR-QK 580 (965)
Q Consensus 509 i~~~~~~---~~~~~~~---~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~~-~~~i~~v~-g~ 580 (965)
+++.+.. .+....+ ..+.++..+++.+++++..++.+ +++.++.+++.+++.+.|.++.. ........ +.
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 282 (374)
T 3uwc_A 205 YAEKLRLYRNHGLINRDVCVEYGINCRMDTIQAVIANRLMNQL--ETITEKRRGIAHLYDQSFVDLSEFIDVPVRREGVY 282 (374)
T ss_dssp HHHHHHHHTBTTEEETTEESSCCCBCBCCHHHHHHHHHHGGGH--HHHHHHHHHHHHHHHHHTGGGTTTEECCCCCTTEE
T ss_pred HHHHHHHHHhcCccccCccccccccCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccCCCeEEeccCCCCCc
Confidence 6554432 1100011 12334456777777776665443 34677888888888888876622 11000111 11
Q ss_pred eEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecC----------------------------CEEEEeCCcccCHH
Q psy8199 581 GMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG----------------------------NTVYLMPPYILNKN 632 (965)
Q Consensus 581 G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~----------------------------~~lR~~p~~~~t~~ 632 (965)
..++.+.+... ....+.+.|.++||.+++.. +.+|++++..++++
T Consensus 283 ~~~~~~~~~~~-------~~~~l~~~L~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~e 355 (374)
T 3uwc_A 283 HVFHIYVLRVK-------YRDQLFQYLKDNGIEVKIHYPIAMHLQPAAKSLGYQQGDFPMAEKHGEAVITLPAHPYLTEE 355 (374)
T ss_dssp CCCSSEEEEET-------THHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSCHHHHHHHHHEEEECCCTTSCHH
T ss_pred eeeEEEEEEcC-------CHHHHHHHHHHCCCccccCCCCccccChhhhhcCCccCCCccHHHHHhCEEEccCCCCCCHH
Confidence 22222222201 14467888999999887643 68999999999999
Q ss_pred HHHHHHHhhhccc
Q psy8199 633 EIQHMTSAIFQTF 645 (965)
Q Consensus 633 ~i~~~~~~l~~~~ 645 (965)
+++++++++.+.+
T Consensus 356 di~~~~~~l~~~l 368 (374)
T 3uwc_A 356 EINYIIKKVREFY 368 (374)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887654
|
| >7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=9e-19 Score=199.21 Aligned_cols=340 Identities=10% Similarity=-0.007 Sum_probs=206.1
Q ss_pred ccccccccchhccCCCC--CHHHHHHHHHHHhh-c-cccccCCCCcHHHHHHHHHHHhhcC--CCCCeEEE--cCChhHH
Q psy8199 255 RYLDAISSWWVNLFGHS--NSYINKALKNQLNK-L-EHVMLSNLTHKPVIKLSEKLSSLTQ--YKLGHCFY--GSDGASA 326 (965)
Q Consensus 255 ~ylD~~~~~~~~~lGh~--~p~v~~av~~~~~~-~-~~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~--~~sGseA 326 (965)
..+|+..|......++. .|.+.+++.+.+.. . ..|....+..+.+..+++.+....+ ...+++++ |+||++|
T Consensus 29 ~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~v~t~G~~~a 108 (401)
T 7aat_A 29 KKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGS 108 (401)
T ss_dssp TCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHH
T ss_pred CceeeeeeeEECCCCCEechHHHHHHHHHhcccccccCCCCCCCCHHHHHHHHHHhcCCCccccccCceEEEecCcchHH
Confidence 46787776542333433 35778887766553 1 1222223344555666666654432 12678877 9999999
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCC-CCCCCCCCChhHHHH
Q psy8199 327 VEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPD-SRNINKGNSANEIAR 405 (965)
Q Consensus 327 ~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 405 (965)
+..++++++.+. .++++|++.+++|+++.......+. .+..+|... ..+.
T Consensus 109 l~~~~~~l~~~~-----~~gd~Vlv~~p~~~~~~~~~~~~g~-------------~~~~~~~~~~~~~~----------- 159 (401)
T 7aat_A 109 LRVGANFLQRFF-----KFSRDVYLPKPSWGNHTPIFRDAGL-------------QLQAYRYYDPKTCS----------- 159 (401)
T ss_dssp HHHHHHHHHHHC-----TTCCEEEEEESCCTTHHHHHHHTTC-------------EEEEEECEETTTTE-----------
T ss_pred HHHHHHHHHHhc-----cCCCEEEEcCCCchhHHHHHHHcCC-------------eeEeeeeeccccCc-----------
Confidence 999998776442 2468899999999887433322221 233333311 0111
Q ss_pred HHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccc---ccccccc-C
Q psy8199 406 CAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK---FFACEHA-E 481 (965)
Q Consensus 406 ~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~---~~~~~~~-~ 481 (965)
.|++++++.+++..+++.+|++.. ++|++|.+. +.+.+++|.++|++||+++|+||+|.+|+..+. ......+ +
T Consensus 160 ~d~~~l~~~l~~~~~~~~~v~i~~-p~NPtG~~~-~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~ 237 (401)
T 7aat_A 160 LDFTGAMEDISKIPEKSIILLHAC-AHNPTGVDP-RQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIE 237 (401)
T ss_dssp ECHHHHHHHHTTSCTTCEEEEESS-SCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHH
T ss_pred cCHHHHHHHHHhCCCCcEEEEeCC-CCCCCCCCC-CHHHHHHHHHHHHhCCcEEEEccccccccCCCccccHHHHHHHHh
Confidence 256777777765545667777777 799999865 778899999999999999999999998876542 2222221 3
Q ss_pred CCcce---eeeccccCCCcccceeeee---cHHH----HHhhhccCCcccccccCCCCCCHHHHHHHHHHHHH-------
Q psy8199 482 IWPDF---LCLSKGITGGYLPLSLVMT---TDKI----YNSIYYKNNINIFLHSHSYSGNPLACCAALATLEI------- 544 (965)
Q Consensus 482 ~~pDi---vt~sK~l~gG~~pig~v~~---~~~i----~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~------- 544 (965)
..+++ .+|||.++..++++|++++ +++. ...+.. .....+.+.+.++++++.+.|+.
T Consensus 238 ~~~~~i~~~S~sK~~~~~G~RiG~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 311 (401)
T 7aat_A 238 QGIDVVLSQSYAKNMGLYGERAGAFTVICRDAEEAKRVESQLKI------LIRPMYSNPPMNGARIASLILNTPELRKEW 311 (401)
T ss_dssp TTCCCEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHH------HHHHHHSSCCHHHHHHHHHHHHCHHHHHHH
T ss_pred cCCcEEEEecCCcccccccCceEEEEEEeCCHHHHHHHHHHHHH------HHHhccCCCChHHHHHHHHHhCCHHHHHHH
Confidence 33454 3789988743389999775 5553 333322 22233444556666666555531
Q ss_pred Hh-cccHHHHHHHHHHHHHHHHHcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecCCEEEE
Q psy8199 545 FN-KDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIGNTVYL 623 (965)
Q Consensus 545 ~~-~~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~lR~ 623 (965)
.+ -+...++++++.+++.+.|+++...+.+....+.|.++.+.-. + .+.+...+.++||.+.+. +||
T Consensus 312 ~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~--~-------~~~~~~ll~~~gi~v~~~---~Ri 379 (401)
T 7aat_A 312 LVEVKGMADRIISMRTQLVSNLKKEGSSHNWQHITDQIGMFCFTGL--K-------PEQVERLTKEFSIYMTKD---GRI 379 (401)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHCCSSEEECCC--C-------HHHHHHHHHHHCEECCTT---CEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceecCCcceEEecCC--C-------HHHHHHHHHhCCEeccCC---CeE
Confidence 01 1235567777888888888765211234444455555544211 1 223334456789999864 578
Q ss_pred eCCcccCHHHHHHHHHhhhcc
Q psy8199 624 MPPYILNKNEIQHMTSAIFQT 644 (965)
Q Consensus 624 ~p~~~~t~~~i~~~~~~l~~~ 644 (965)
+.+. +++++++++++++.++
T Consensus 380 s~~~-~~~~~i~~~~~~l~~~ 399 (401)
T 7aat_A 380 SVAG-VASSNVGYLAHAIHQV 399 (401)
T ss_dssp EGGG-CCTTTHHHHHHHHHHH
T ss_pred Eecc-CChhhHHHHHHHHHHH
Confidence 8553 4556699999887653
|
| >3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum} | Back alignment and structure |
|---|
Probab=99.80 E-value=5.1e-19 Score=199.16 Aligned_cols=310 Identities=14% Similarity=0.083 Sum_probs=199.2
Q ss_pred HHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEE
Q psy8199 273 SYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICL 352 (965)
Q Consensus 273 p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~ 352 (965)
|++.+++.+++... ..+..+...++.+.++++++ .++++|++||++|++.+++.+.. .++++|++.
T Consensus 17 ~~~~~a~~~~~~~~-----~~~~~~~~~~l~~~la~~~~--~~~~i~~~sgt~al~~~l~~l~~-------~~gd~Vi~~ 82 (373)
T 3frk_A 17 YEIKFKFEEIYKRN-----WFILGDEDKKFEQEFADYCN--VNYCIGCGNGLDALHLILKGYDI-------GFGDEVIVP 82 (373)
T ss_dssp HHHHHHHHHHHHHT-----CCSSSHHHHHHHHHHHHHHT--SSEEEEESCHHHHHHHHHHHTTC-------CTTCEEEEE
T ss_pred HHHHHHHHHHHHCC-----CccCCchHHHHHHHHHHHhC--CCeEEEeCCHHHHHHHHHHHcCC-------CCcCEEEEC
Confidence 44455555554442 12456788999999999995 46999999999999999987621 356889999
Q ss_pred cCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccc
Q psy8199 353 QNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQ 432 (965)
Q Consensus 353 ~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~ 432 (965)
.++|++........+. .+.+++.....+. .|+++|++++. +++++|+ | +
T Consensus 83 ~~~~~~~~~~~~~~g~-------------~~~~~~~~~~~~~-----------~d~~~l~~~l~---~~~~~v~--~--~ 131 (373)
T 3frk_A 83 SNTFIATALAVSYTGA-------------KPIFVEPDIRTYN-----------IDPSLIESAIT---EKTKAII--A--V 131 (373)
T ss_dssp TTSCTHHHHHHHHHSC-------------EEEEECEETTTTE-----------ECGGGTGGGCC---TTEEEEE--E--E
T ss_pred CCCcHHHHHHHHHcCC-------------EEEEEeccccccC-----------cCHHHHHHhcC---CCCeEEE--E--E
Confidence 9999886433222211 2233332211111 15677777664 3567776 4 4
Q ss_pred cCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcceeeec----cccCC-Ccccceeeeec-
Q psy8199 433 CAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS----KGITG-GYLPLSLVMTT- 506 (965)
Q Consensus 433 ~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~s----K~l~g-G~~pig~v~~~- 506 (965)
+++|...+ +++|.++|++||+++|+||+|+ +|. .+.....+..+|++++| |++++ | ..|+++++
T Consensus 132 n~~G~~~~----l~~i~~l~~~~~~~li~D~a~~-~g~---~~~~~~~~~~~d~~~~S~~~~K~l~~~g--~gg~~~~~~ 201 (373)
T 3frk_A 132 HLYGQPAD----MDEIKRIAKKYNLKLIEDAAQA-HGS---LYKGMKVGSLGDAAGFSFYPAKNLGSLG--DGGAVVTND 201 (373)
T ss_dssp CCTTCCCC----HHHHHHHHHHHTCEEEEECTTC-TTC---EETTEETTSSSSEEEEECCTTSSSCCSS--SCEEEEESC
T ss_pred CCCcCccc----HHHHHHHHHHcCCEEEEECCcc-cCC---EECCEeccccccEEEEeCcCCCccCccc--eeEEEEeCC
Confidence 57887766 9999999999999999999997 322 12333455557999887 99987 5 36777775
Q ss_pred HHHHHhhhc---cCCc---ccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHccc-CCCceeeeec
Q psy8199 507 DKIYNSIYY---KNNI---NIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLI-THPKIINFRQ 579 (965)
Q Consensus 507 ~~i~~~~~~---~~~~---~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~-~~~~i~~v~g 579 (965)
+++++.+.. .+.. .....+.++..++++++++++.++.++ ...++.+++.+++.+.|+++. ..+.... ..
T Consensus 202 ~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~ 278 (373)
T 3frk_A 202 KDLAEKIKALSNYGSEKKYHHIYKGFNSRLDELQAGFLRVKLKYLD--KWNEERRKIAQKYIAGINNPNVIIPVEAD-YA 278 (373)
T ss_dssp HHHHHHHHHHHBTTCSBTTBCCSCCCBCCCCHHHHHHHHHHHHTHH--HHHHHHHHHHHHHHHHCCCTTEECCCCCT-TE
T ss_pred HHHHHHHHHHHhcCcccCCccccccccCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhccCceEeccCCC-CC
Confidence 446554432 1111 111234456678888888777776443 467777888888888876651 1111000 01
Q ss_pred eeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecC----------------------------CEEEEeCCcccCH
Q psy8199 580 KGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG----------------------------NTVYLMPPYILNK 631 (965)
Q Consensus 580 ~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~----------------------------~~lR~~p~~~~t~ 631 (965)
...++.+.+...+ ...+.+.|.++||.+++.. +.+|++....+|+
T Consensus 279 ~~~~~~~~~~~~~-------~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~ 351 (373)
T 3frk_A 279 KHVWYTFVIRSEK-------RDELQKYLNNNGIGTLIHYPIPIHLQQAYKDLGFKTGNFPIAEKIANEILSIPIWYGMKN 351 (373)
T ss_dssp ECCCSSEEEEESS-------HHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSSHHHHHHHHHEEEECCCTTCCH
T ss_pred ceeeEEEEEEeCC-------HHHHHHHHHHCCCCcccCcCCccccChHHHhcCCCCCCCHHHHHHHhCEEEccCCCCCCH
Confidence 1222222222111 4468889999999887321 5799999999999
Q ss_pred HHHHHHHHhhhccccc
Q psy8199 632 NEIQHMTSAIFQTFNE 647 (965)
Q Consensus 632 ~~i~~~~~~l~~~~~~ 647 (965)
++++.+++.+.+...+
T Consensus 352 ~di~~~~~~l~~~~~~ 367 (373)
T 3frk_A 352 EEIEYVIDKINAWKLE 367 (373)
T ss_dssp HHHHHHHHHHHTCC--
T ss_pred HHHHHHHHHHHHHhhh
Confidence 9999999999876544
|
| >3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.5e-19 Score=206.96 Aligned_cols=336 Identities=12% Similarity=0.098 Sum_probs=195.8
Q ss_pred EecCCcccccccccchhccCCCCCHHHHHHHHHHHhhcc---ccc----cCCCCcHHHHHHH-HHHHhhcCCCCCeEEEc
Q psy8199 249 ITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLE---HVM----LSNLTHKPVIKLS-EKLSSLTQYKLGHCFYG 320 (965)
Q Consensus 249 ~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~---~~~----~~~~~~~~~~~la-~~l~~~~~~~~~~v~~~ 320 (965)
++.+++++.|....+++.++ .||+|++|+.+++.+.. +.. ......+...+++ +++++.++...+.+ ++
T Consensus 22 ~~~~~~~~~~~~~~~~~~n~--~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~v-~~ 98 (420)
T 3gbx_A 22 MEQEKVRQEEHIELIASENY--TSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGADYANV-QP 98 (420)
T ss_dssp HHHHHHHHHHSEECCTTCCC--CCHHHHHHHTSGGGGCCC--------------CHHHHHHHHHHHHHHHTCSEEEC-CC
T ss_pred HHHHHHhhhcceeeeccCCC--CCHHHHHHHHHHHhcccccCCCCccccCchHHHHHHHHHHHHHHHHHhCCCCcee-Ee
Confidence 34455666666555544443 69999999999885421 100 0111223445544 67888886433334 45
Q ss_pred CChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccc--cccCCcCccchhcccCCCeeEecCCCCCCCCCCC
Q psy8199 321 SDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGAL--AVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGN 398 (965)
Q Consensus 321 ~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (965)
+||++|++.|++.+. .+++.|++.++.|++...... ...+ .......++.... +.
T Consensus 99 ~sGs~a~~~a~~~~~--------~~gd~v~~~~~~~~~~~~~~~~~~~~g----------~~~~~~~~~~~~~-~~---- 155 (420)
T 3gbx_A 99 HSGSQANFAVYTALL--------QPGDTVLGMNLAQGGHLTHGSPVNFSG----------KLYNIVPYGIDES-GK---- 155 (420)
T ss_dssp SSHHHHHHHHHHHHC--------CTTCEEEEEEEC------------CHH----------HHSEEEEEEECTT-CS----
T ss_pred cCcHHHHHHHHHHhc--------CCCCEEEecchhhcceeccchhhhhcc----------cceeEEeccCCcc-CC----
Confidence 778999999998774 256788888877755321111 1111 0001111121111 11
Q ss_pred ChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEecccc-CCCcccccccc
Q psy8199 399 SANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAV-GCGRTGKFFAC 477 (965)
Q Consensus 399 ~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-g~gr~G~~~~~ 477 (965)
.|+++|++++++. ++++|++++ .++ |...+ +++|+++|++||+++|+||+|. |+.+.|.....
T Consensus 156 -------~d~~~l~~~i~~~--~~~~v~~~~-~~~--~~~~~----l~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~ 219 (420)
T 3gbx_A 156 -------IDYDEMAKLAKEH--KPKMIIGGF-SAY--SGVVD----WAKMREIADSIGAYLFVDMAHVAGLIAAGVYPNP 219 (420)
T ss_dssp -------CCHHHHHHHHHHH--CCSEEEECC-TTC--CSCCC----HHHHHHHHHHTTCEEEEECTTTHHHHHTTSSCCS
T ss_pred -------cCHHHHHHHHHhc--CCeEEEEec-Ccc--CCccC----HHHHHHHHHHcCCEEEEECCcchhceecccCCcc
Confidence 3788999998753 356667744 233 33444 8999999999999999999974 44333432211
Q ss_pred cccCCCcceee--eccccCCCcccceeeeecH---HHHHhhhccCCcccccccCCCCCC-HHHHHHHHHHHHHHhc---c
Q psy8199 478 EHAEIWPDFLC--LSKGITGGYLPLSLVMTTD---KIYNSIYYKNNINIFLHSHSYSGN-PLACCAALATLEIFNK---D 548 (965)
Q Consensus 478 ~~~~~~pDivt--~sK~l~gG~~pig~v~~~~---~i~~~~~~~~~~~~~~~~~t~~~~-~~~~aaa~a~L~~~~~---~ 548 (965)
.. .+|+++ +||+++| .+.|++++++ ++.+.+.. ..+.++++++ ...++++.+++....+ +
T Consensus 220 --~~-~~di~~~s~sK~~~g--~~gg~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~ 288 (420)
T 3gbx_A 220 --VP-HAHVVTTTTHKTLAG--PRGGLILAKGGDEELYKKLNS------AVFPSAQGGPLMHVIAGKAVALKEAMEPEFK 288 (420)
T ss_dssp --TT-TSSEEEEESSGGGCS--CSCEEEEESSCCHHHHHHHHH------HHC----CCCCHHHHHHHHHHHHHTTSHHHH
T ss_pred --cc-cCCEEEeecccCCCC--CCceEEEEcCCcHHHHHHhhh------hcCCCCCCCcchhHHHHHHHHHHHHHhHhHH
Confidence 11 288887 6799975 3458888887 77776654 1233333333 3344444445543322 3
Q ss_pred cHHHHHHHHHHHHHHHHHcccCCCceeeee--ceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEee-------c--
Q psy8199 549 NILQRISQDMKKITKALTSLITHPKIINFR--QKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRP-------I-- 617 (965)
Q Consensus 549 ~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~--g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~-------~-- 617 (965)
+..++++++.+++.+.|.+. ++..+. ..+.++.+.+. .. ......+.+.|.++||++.+ .
T Consensus 289 ~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~ 359 (420)
T 3gbx_A 289 VYQQQVAKNAKAMVEVFLNR----GYKVVSGGTENHLFLLDLV-DK----NLTGKEADAALGRANITVNKNSVPNDPKSP 359 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHHT----TCEEGGGSCSSSEEEEECG-GG----TCCHHHHHHHHHHTTEECEEECCTTCSSCT
T ss_pred HHHHHHHHHHHHHHHHHHhc----CCeeccCCCCCeEEEEEcC-CC----CCCHHHHHHHHHHCCcEeccccCCCCcccc
Confidence 45788888888898888763 343333 35667777664 11 11134566778889999987 1
Q ss_pred --CCEEEEeCCcc----cCHHHHHHHHHhhhcccc
Q psy8199 618 --GNTVYLMPPYI----LNKNEIQHMTSAIFQTFN 646 (965)
Q Consensus 618 --~~~lR~~p~~~----~t~~~i~~~~~~l~~~~~ 646 (965)
.+.+||+++.. +++++++++++.+.+++.
T Consensus 360 ~~~~~iRi~~~~~~~~~~~~~~i~~~~~~l~~~l~ 394 (420)
T 3gbx_A 360 FVTSGIRIGSPAVTRRGFKEAEVKELAGWMCDVLD 394 (420)
T ss_dssp TTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCcceEEecchhcccCCCHHHHHHHHHHHHHHHh
Confidence 14699998876 458999999988876543
|
| >3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.1e-18 Score=196.96 Aligned_cols=240 Identities=11% Similarity=0.055 Sum_probs=167.6
Q ss_pred cCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCc
Q psy8199 291 LSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQ 370 (965)
Q Consensus 291 ~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~ 370 (965)
++.+.++...+|+++++++.+ .+.+++++||++|++++++++ .++++|++.++.|||........+
T Consensus 61 y~r~~~p~~~~l~~~la~l~g--~~~~~~~~sG~~Ai~~~~~l~---------~~gd~Vi~~~~~y~~~~~~~~~~~--- 126 (400)
T 3nmy_A 61 YSRTHNPTRFAYERCVAALEG--GTRAFAFASGMAATSTVMELL---------DAGSHVVAMDDLYGGTFRLFERVR--- 126 (400)
T ss_dssp BTTTCCHHHHHHHHHHHHHHT--CSEEEEESSHHHHHHHHHTTS---------CTTCEEEEESSCCHHHHHHHHHTH---
T ss_pred cccCCCHHHHHHHHHHHHHhC--CCCEEEecCHHHHHHHHHHHc---------CCCCEEEEeCCCchHHHHHHHHhh---
Confidence 356788999999999999985 458899999999999854433 356789999999987532221110
Q ss_pred CccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHH
Q psy8199 371 SFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVRE 450 (965)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~ 450 (965)
.......+.+++. .|+++|+++++ +++++|++|+ ++|++|.+.+ +++|++
T Consensus 127 -----~~~~g~~~~~v~~-----------------~d~~~l~~~i~---~~~~~v~~e~-~~np~G~~~~----l~~i~~ 176 (400)
T 3nmy_A 127 -----RRTAGLDFSFVDL-----------------TDPAAFKAAIR---ADTKMVWIET-PTNPMLKLVD----IAAIAV 176 (400)
T ss_dssp -----HHHHCCEEEEECT-----------------TSHHHHHHHCC---TTEEEEEEES-SCTTTCCCCC----HHHHHH
T ss_pred -----HhhcCeEEEEECC-----------------CCHHHHHHHhc---cCCCEEEEEC-CCCCCCeeec----HHHHHH
Confidence 1111223444443 26788888874 4689999999 9999999886 999999
Q ss_pred HHHhcCCeEEEeccccCCCcccccccccccCCCcceeeeccccCCCccccee--ee-ecHHHHHhhhccCCcccccccCC
Q psy8199 451 ICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSL--VM-TTDKIYNSIYYKNNINIFLHSHS 527 (965)
Q Consensus 451 l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~sK~l~gG~~pig~--v~-~~~~i~~~~~~~~~~~~~~~~~t 527 (965)
+|++||+++|+||+|+. +..+....+|..+.+.+++|.++|++.++|+ ++ .++++++.+.. +.+..+
T Consensus 177 la~~~g~~livDe~~~~----~~~~~~~~~g~div~~S~sK~l~g~g~~~gG~~vv~~~~~~~~~l~~------~~~~~g 246 (400)
T 3nmy_A 177 IARKHGLLTVVDNTFAS----PMLQRPLSLGADLVVHSATKYLNGHSDMVGGIAVVGDNAELAEQMAF------LQNSIG 246 (400)
T ss_dssp HHHHTTCEEEEECTTTH----HHHCCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECSCHHHHHHHHH------HHHHHC
T ss_pred HHHHcCCEEEEECCCcc----cccCChhhcCCcEEEecCccccCCCCCcceeEEEEeCCHHHHHHHHH------HHHhcC
Confidence 99999999999999862 1111112234333344589999986567755 33 36777777654 234455
Q ss_pred CCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcccCCCceeee------------------eceeEEEEEEEe
Q psy8199 528 YSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINF------------------RQKGMIWAFDVI 589 (965)
Q Consensus 528 ~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v------------------~g~G~~~~i~~~ 589 (965)
...+|+.++.++..|+.+.. ..++..++.+++.+.|++ +|.+..| +|.|.|++|++.
T Consensus 247 ~~~~~~~a~~~l~~l~~l~~--r~~~~~~~a~~l~~~L~~---~p~v~~V~~p~l~~~~~~~~~~~~~~g~G~~~~~~l~ 321 (400)
T 3nmy_A 247 GVQGPFDSFLALRGLKTLPL--RMRAHCENALALAQWLET---HPAIEKVIYPGLASHPQHVLAKRQMSGFGGIVSIVLK 321 (400)
T ss_dssp CBCCHHHHHHHHHHHTTHHH--HHHHHHHHHHHHHHHHTT---CTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEET
T ss_pred CCCCHHHHHHHHHhHhHHHH--HHHHHHHHHHHHHHHHHc---CCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEeC
Confidence 67789998888888865532 355666677777777654 3555444 778999999985
|
| >3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.5e-18 Score=196.95 Aligned_cols=268 Identities=12% Similarity=0.075 Sum_probs=177.5
Q ss_pred cCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCc
Q psy8199 291 LSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQ 370 (965)
Q Consensus 291 ~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~ 370 (965)
...+.++...+|+++++++.+ .+.+++++||++|++.+++.+. .++++||+.++.||++......
T Consensus 75 y~r~~~p~~~~l~~~la~~~g--~~~~~~~~sG~~Ai~~al~~l~--------~~Gd~Vi~~~~~y~~~~~~~~~----- 139 (414)
T 3ndn_A 75 YSRYGNPTVSVFEERLRLIEG--APAAFATASGMAAVFTSLGALL--------GAGDRLVAARSLFGSCFVVCSE----- 139 (414)
T ss_dssp BTTTCCHHHHHHHHHHHHHHT--CSEEEEESSHHHHHHHHHHTTC--------CTTCEEEEESCCCHHHHHHHHT-----
T ss_pred cCCCCChHHHHHHHHHHHHHC--CCcEEEECCHHHHHHHHHHHHh--------CCCCEEEEcCCccchHHHHHHH-----
Confidence 456788999999999999985 5789999999999999998763 2568899999999986321111
Q ss_pred CccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHH
Q psy8199 371 SFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVRE 450 (965)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~ 450 (965)
.+......+.+++. .|+++|+++++ +++++|++|+ ++|++|.+.+ +++|++
T Consensus 140 ----~~~~~g~~~~~v~~-----------------~d~~~l~~ai~---~~t~~v~le~-p~NptG~~~~----l~~i~~ 190 (414)
T 3ndn_A 140 ----ILPRWGVQTVFVDG-----------------DDLSQWERALS---VPTQAVFFET-PSNPMQSLVD----IAAVTE 190 (414)
T ss_dssp ----HHHHTTCEEEEECT-----------------TCHHHHHHHTS---SCCSEEEEES-SCTTTCCCCC----HHHHHH
T ss_pred ----HHHHcCcEEEEeCC-----------------CCHHHHHHhcC---CCCeEEEEEC-CCCCCCcccc----HHHHHH
Confidence 01112223455544 26788888885 3567888898 8999998876 999999
Q ss_pred HHHhcCCeEEEeccccCCCcccccccccccCCCcceeeeccccCC-CcccceeeeecHHHHH-hhhccCCcccccccCCC
Q psy8199 451 ICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITG-GYLPLSLVMTTDKIYN-SIYYKNNINIFLHSHSY 528 (965)
Q Consensus 451 l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~sK~l~g-G~~pig~v~~~~~i~~-~~~~~~~~~~~~~~~t~ 528 (965)
+|++||+++|+||+|+ +|..+....+|....+.+++|.+++ |.+++|+++++++.+. .+... ...++.+
T Consensus 191 la~~~g~~livDe~~~----~~~~~~~~~~g~div~~S~sK~l~~~G~~~~G~vv~~~~~~~~~l~~~----~~~~g~~- 261 (414)
T 3ndn_A 191 LAHAAGAKVVLDNVFA----TPLLQQGFPLGVDVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKL----MRHTGPA- 261 (414)
T ss_dssp HHHHTTCEEEEECTTT----HHHHCCCGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHTTHHHHH----HHHHCCC-
T ss_pred HHHHcCCEEEEECCCc----ccccCCchhcCCCeEeccCCccccCCCCceEEEEEECHHHHHHHHHHH----HHHcCCC-
Confidence 9999999999999986 2322222234543444468899988 4368899999887765 44320 0112333
Q ss_pred CCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHccc-----CCCce----------eeeeceeEEEEEEEeecCc
Q psy8199 529 SGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLI-----THPKI----------INFRQKGMIWAFDVIIEDP 593 (965)
Q Consensus 529 ~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~-----~~~~i----------~~v~g~G~~~~i~~~~~~~ 593 (965)
.+|..+++++..++.+. ...++..++.+++.+.|++.. .+|++ ...+|.|.|++|++. +..
T Consensus 262 -~~~~~a~~~~~~l~~l~--~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~G~~l~~~l~-~~~ 337 (414)
T 3ndn_A 262 -MSAFNAWVLLKGLETLA--IRVQHSNASAQRIAEFLNGHPSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALD-CPE 337 (414)
T ss_dssp -CCHHHHHHHHHHGGGHH--HHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEEC-SCG
T ss_pred -CCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcCCCEeEEECCCCCCCcCHHHHHHhCCCCceEEEEEEc-CCc
Confidence 47787777777766543 235566677777777776541 12221 123567999999985 110
Q ss_pred cchhhHHHHHHHHHHHcCcEEe
Q psy8199 594 EQIETFSKKFFVAALKNELLLR 615 (965)
Q Consensus 594 ~~~~~~~~~~~~~l~~~Gi~~~ 615 (965)
......+..+.+.|...++.+.
T Consensus 338 ~~~~~~~~~~~~~l~~~~~~~s 359 (414)
T 3ndn_A 338 DVAKQRAFEVLDKMRLIDISNN 359 (414)
T ss_dssp GGHHHHHHHHHHHCSSSEECSC
T ss_pred cccHHHHHHHHHhCccceEcCC
Confidence 0001224456666665555443
|
| >3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.6e-18 Score=194.65 Aligned_cols=304 Identities=15% Similarity=0.121 Sum_probs=198.7
Q ss_pred HHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEE
Q psy8199 273 SYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICL 352 (965)
Q Consensus 273 p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~ 352 (965)
|++.+++.+++... ..+..+...++++.++++++ .+++++++||++|++.|++.+.. .++++|++.
T Consensus 16 ~~v~~a~~~~~~~~-----~~~~~~~~~~l~~~la~~~~--~~~~~~~~sGt~al~~al~~~~~-------~~gd~Vi~~ 81 (367)
T 3nyt_A 16 DKIDAGIQRVLRHG-----QYILGPEVTELEDRLADFVG--AKYCISCANGTDALQIVQMALGV-------GPGDEVITP 81 (367)
T ss_dssp HHHHHHHHHHHHHC-----CCSSCHHHHHHHHHHHHHHT--CSEEEEESCHHHHHHHHHHHTTC-------CTTCEEEEE
T ss_pred HHHHHHHHHHHhcC-----CccCChHHHHHHHHHHHHhC--CCcEEEeCCHHHHHHHHHHHhCC-------CCcCEEEEC
Confidence 45555555555442 22356788899999999995 45999999999999999997731 356889999
Q ss_pred cCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccc
Q psy8199 353 QNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQ 432 (965)
Q Consensus 353 ~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~ 432 (965)
.++|++........+. .+.+++.....+. .|+++|++++. +++++|+ | .
T Consensus 82 ~~~~~~~~~~~~~~G~-------------~~~~~~~~~~~~~-----------~d~~~l~~~i~---~~~~~v~--~--~ 130 (367)
T 3nyt_A 82 GFTYVATAETVALLGA-------------KPVYVDIDPRTYN-----------LDPQLLEAAIT---PRTKAII--P--V 130 (367)
T ss_dssp SSSCTHHHHHHHHTTC-------------EEEEECBCTTTCS-----------BCGGGTGGGCC---TTEEEEC--C--B
T ss_pred CCccHHHHHHHHHcCC-------------EEEEEecCCccCC-----------cCHHHHHHhcC---cCCcEEE--e--e
Confidence 9999887544333222 2334443321111 25677777763 4677777 4 4
Q ss_pred cCCCcccCChHHHHHHHHHHHhcCCeEEEecccc-CCCcccccccccccCCCcceeeec----cccCC-Ccccceeeee-
Q psy8199 433 CAGGMIMYDSIYLKLVREICNNYNIHLIADEIAV-GCGRTGKFFACEHAEIWPDFLCLS----KGITG-GYLPLSLVMT- 505 (965)
Q Consensus 433 ~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-g~gr~G~~~~~~~~~~~pDivt~s----K~l~g-G~~pig~v~~- 505 (965)
+++|...+ +++|.++|++||+++|+||+|+ |....|. ..+...|++++| |.+++ | . .|++++
T Consensus 131 ~~~G~~~~----~~~i~~la~~~~~~li~D~a~~~g~~~~~~-----~~~~~~di~~~Sf~~~K~l~~~g-~-gg~~~~~ 199 (367)
T 3nyt_A 131 SLYGQCAD----FDAINAIASKYGIPVIEDAAQSFGASYKGK-----RSCNLSTVACTSFFPSAPLGCYG-D-GGAIFTN 199 (367)
T ss_dssp CGGGCCCC----HHHHHHHHHHTTCCBEEECTTTTTCEETTE-----ETTSSSSEEEEECCTTSSSCCSS-C-CEEEEES
T ss_pred CCccChhh----HHHHHHHHHHcCCEEEEECccccCCeECCe-----eccCCCCEEEEECCCCCcCCCcC-c-eeEEEeC
Confidence 46676655 9999999999999999999997 2222222 222233898886 99988 6 2 677777
Q ss_pred cHHHHHhhhcc---CCccc---ccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcc-cCCCceee-e
Q psy8199 506 TDKIYNSIYYK---NNINI---FLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSL-ITHPKIIN-F 577 (965)
Q Consensus 506 ~~~i~~~~~~~---~~~~~---~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l-~~~~~i~~-v 577 (965)
++++++.+..- +.... ...+.++..+++.++++++.++.++ ...++.+++.+++.+.|+++ ...+.... .
T Consensus 200 ~~~l~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~~~--~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~ 277 (367)
T 3nyt_A 200 DDELATAIRQIARHGQDRRYHHIRVGVNSRLDTLQAAILLPKLEIFE--EEIALRQKVAAEYDLSLKQVGIGTPFIEVNN 277 (367)
T ss_dssp CHHHHHHHHHHTBTTEEETTEECSCCCBCCCCHHHHHHHHHHHHTHH--HHHHHHHHHHHHHHHHHHHTTCCCCCCCTTE
T ss_pred CHHHHHHHHHHHhcCCCcCceeeccCcCCCccHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhccCCeeccCCCCCC
Confidence 46776655431 10000 1124578889999999999987653 46788888899999999876 12221111 0
Q ss_pred eceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecC-------------------------CEEEEeCCcccCHH
Q psy8199 578 RQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG-------------------------NTVYLMPPYILNKN 632 (965)
Q Consensus 578 ~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~-------------------------~~lR~~p~~~~t~~ 632 (965)
.....++.+.+. + .+.+.+.|.++||.+++.. ..+|+.....++++
T Consensus 278 ~~~~~~~~~~~~--~-------~~~l~~~L~~~GI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lp~~~~~t~~ 348 (367)
T 3nyt_A 278 ISVYAQYTVRMD--N-------RESVQASLKAAGVPTAVHYPIPLNKQPAVADEKAKLPVGDKAATQVMSLPMHPYLDTA 348 (367)
T ss_dssp ECCCSSEEEECS--S-------HHHHHHHHHHHTCCCBCSCSSCGGGSGGGCCTTCCCHHHHHHHHHEEEECCCTTCCHH
T ss_pred ceeeEEEEEEeC--C-------HHHHHHHHHHCCCceeccCCCccccChhhhccCCCChHHHHHHhCeEEccCCCCCCHH
Confidence 111112222221 1 4467888999999776311 36788877888889
Q ss_pred HHHHHHHhhhc
Q psy8199 633 EIQHMTSAIFQ 643 (965)
Q Consensus 633 ~i~~~~~~l~~ 643 (965)
+++.+++.+.+
T Consensus 349 ~i~~v~~~~~~ 359 (367)
T 3nyt_A 349 SIKIICAALTN 359 (367)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHH
Confidence 99888888764
|
| >1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=3.9e-18 Score=193.36 Aligned_cols=313 Identities=14% Similarity=0.064 Sum_probs=208.5
Q ss_pred CHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEE
Q psy8199 272 NSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFIC 351 (965)
Q Consensus 272 ~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~ 351 (965)
+|++++++.++++...+ .+.+...++.+.++++++ .+++++++||++|++.+++.+.. .++++|++
T Consensus 19 ~~~~~~a~~~~~~~~~~-----~~~~~~~~l~~~la~~~~--~~~~~~~~~gt~al~~~~~~~~~-------~~gd~Vl~ 84 (393)
T 1mdo_A 19 GAEELAAVKTVLDSGWI-----TTGPKNQELEAAFCRLTG--NQYAVAVSSATAGMHIALMALGI-------GEGDEVIT 84 (393)
T ss_dssp CHHHHHHHHHHHHHTCC-----SSSHHHHHHHHHHHHHHC--CSEEEEESCHHHHHHHHHHHTTC-------CTTCEEEE
T ss_pred CHHHHHHHHHHHhcCCc-----CCChHHHHHHHHHHHHhC--CCcEEEecChHHHHHHHHHHcCC-------CCCCEEEe
Confidence 58899999998876421 245778899999999995 46899999999999999987621 35678999
Q ss_pred EcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEcccc
Q psy8199 352 LQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLV 431 (965)
Q Consensus 352 ~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v 431 (965)
.+++|++..... ...| ..+..++....... .|+++|+++++ +++++|++++
T Consensus 85 ~~~~~~~~~~~~-~~~g------------~~~~~v~~~~~~~~-----------~d~~~l~~~l~---~~~~~v~~~~-- 135 (393)
T 1mdo_A 85 PSMTWVSTLNMI-VLLG------------ANPVMVDVDRDTLM-----------VTPEHIEAAIT---PQTKAIIPVH-- 135 (393)
T ss_dssp ESSSCHHHHHHH-HHTT------------CEEEEECBCTTTCC-----------BCHHHHHHHCC---TTEEEECCBC--
T ss_pred CCCccHhHHHHH-HHCC------------CEEEEEeccCCcCC-----------CCHHHHHHhcC---CCceEEEEeC--
Confidence 999998874322 2111 12334443211111 36788888875 3577777755
Q ss_pred ccCCCcccCChHHHHHHHHHHHhcCCeEEEecccc-CCCcccccccccccCCCcceeeec----cccCCCcccceeeeec
Q psy8199 432 QCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAV-GCGRTGKFFACEHAEIWPDFLCLS----KGITGGYLPLSLVMTT 506 (965)
Q Consensus 432 ~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-g~gr~G~~~~~~~~~~~pDivt~s----K~l~gG~~pig~v~~~ 506 (965)
++|.+.+ +++|.++|++||+++|+||+|+ |+...|.. ++. +|++++| |++++| ++|+++++
T Consensus 136 --~~G~~~~----~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~-----~~~-~d~~~~S~~k~K~l~~~--~~g~~~~~ 201 (393)
T 1mdo_A 136 --YAGAPAD----LDAIYALGERYGIPVIEDAAHATGTSYKGRH-----IGA-RGTAIFSFHAIKNITCA--EGGIVVTD 201 (393)
T ss_dssp --GGGCCCC----HHHHHHHHHHHTCCBCEECTTCTTCEETTEE-----TTS-SSEEEEECCTTSSSCSS--SCEEEEES
T ss_pred --CCCCcCC----HHHHHHHHHHcCCeEEEECccccCCeECCee-----cCC-CCeEEEeCCCCCccccc--cceEEEeC
Confidence 4666655 8999999999999999999998 33233322 233 7988776 999875 68888886
Q ss_pred -HHHHHhhhccCCcc-------------ccc-----ccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHc
Q psy8199 507 -DKIYNSIYYKNNIN-------------IFL-----HSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTS 567 (965)
Q Consensus 507 -~~i~~~~~~~~~~~-------------~~~-----~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~ 567 (965)
+++++.+..-.... ++. .+..+..+++.++++++.++.++ +..++.+++.+++.+.|.+
T Consensus 202 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~~--~~~~~~~~~~~~l~~~L~~ 279 (393)
T 1mdo_A 202 NPQFADKLRSLKFHGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQLQKLD--ALNARRAAIAAQYHQAMAD 279 (393)
T ss_dssp CHHHHHHHHHHTBTTEECC-----------CCEESSCCCBCCCCHHHHHHHHHHHHTHH--HHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHhcCCcccchhhhcccccccccccccCccCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhc
Confidence 77877664310000 000 11114458888888888776543 4677777888888888876
Q ss_pred cc-CCCcee--eeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec--------------------------C
Q psy8199 568 LI-THPKII--NFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI--------------------------G 618 (965)
Q Consensus 568 l~-~~~~i~--~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~--------------------------~ 618 (965)
+. +.+... ..++.+.++.+.+. .. ........+.+.|.++||.++++ .
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~v~~~-~~--~~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (393)
T 1mdo_A 280 LPFQPLSLPSWEHIHAWHLFIIRVD-EA--RCGITRDALMASLKTKGIGTGLHFRAAHTQKYYRERFPTLTLPDTEWNSE 356 (393)
T ss_dssp SSCEECCCCSSCEECCCSCEEEECC-HH--HHSSCHHHHHHHHHHTTBCCBCCCCCGGGSHHHHHHSTTCCCHHHHHHHT
T ss_pred CCcccccCCCCCCCceeEEEEEEec-cc--ccccCHHHHHHHHHhCCCCcccccCccccChhhhccCCccCChhHHHHHh
Confidence 52 111011 12234456666663 10 00011446888899999988752 1
Q ss_pred CEEEEeCCcccCHHHHHHHHHhhhcccc
Q psy8199 619 NTVYLMPPYILNKNEIQHMTSAIFQTFN 646 (965)
Q Consensus 619 ~~lR~~p~~~~t~~~i~~~~~~l~~~~~ 646 (965)
+.+|++++..+++++++.+++++.+.+.
T Consensus 357 ~~lRi~~~~~~t~~~i~~~~~~l~~~~~ 384 (393)
T 1mdo_A 357 RICSLPLFPDMTESDFDRVITALHQIAG 384 (393)
T ss_dssp TEEEECCCTTCCHHHHHHHHHHHHHHHC
T ss_pred CEEEecCCCCCCHHHHHHHHHHHHHHHh
Confidence 3799998888999999999999876544
|
| >3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.79 E-value=3.1e-18 Score=197.36 Aligned_cols=339 Identities=13% Similarity=0.098 Sum_probs=203.5
Q ss_pred CCHHHHHHHHHHHhh-cccc-ccCC---CC--cHHHHHHH-HHHHhhcCCCCCeEEE-cCChhHHHHHHHHHHHHHHHhc
Q psy8199 271 SNSYINKALKNQLNK-LEHV-MLSN---LT--HKPVIKLS-EKLSSLTQYKLGHCFY-GSDGASAVEVALKMSFHYWYNK 341 (965)
Q Consensus 271 ~~p~v~~av~~~~~~-~~~~-~~~~---~~--~~~~~~la-~~l~~~~~~~~~~v~~-~~sGseA~~~Al~~a~~~~~~~ 341 (965)
.+|+|++|+.+++.+ .... .... +. .+..++++ +++++.++ .+.+.+ ++||++|++.|++.+++
T Consensus 57 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~~e~~a~~~la~~~g--~~~~~v~~~sGs~a~~~a~~~~~~----- 129 (447)
T 3h7f_A 57 VPRAVLQAQGSVLTNKYAEGLPGRRYYGGCEHVDVVENLARDRAKALFG--AEFANVQPHSGAQANAAVLHALMS----- 129 (447)
T ss_dssp CCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHT--CSEEECCCSSHHHHHHHHHHHHCC-----
T ss_pred CCHHHHHHHHHHhcCCccccCCcccccCccHHHHHHHHHHHHHHHHHcC--CCceEEEeCCHHHHHHHHHHHhcC-----
Confidence 489999999988853 2111 1001 11 11335677 88999885 455666 89999999999998753
Q ss_pred CCCCceEEEEEcCCccCCc-ccc-ccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCC
Q psy8199 342 GFLNKKKFICLQNSYHGET-LGA-LAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNH 419 (965)
Q Consensus 342 g~~~~~~vi~~~~~yHg~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~ 419 (965)
++++|++.+++|+++. .+. ....+ .......++.....+. .|+++|++++.+..
T Consensus 130 ---~Gd~Vl~~~~~~~~~~~~~~~~~~~g----------~~~~~~~~~~~~~~~~-----------~d~~~l~~~i~~~~ 185 (447)
T 3h7f_A 130 ---PGERLLGLDLANGGHLTHGMRLNFSG----------KLYENGFYGVDPATHL-----------IDMDAVRATALEFR 185 (447)
T ss_dssp ---TTCEEEEECGGGTCCGGGTCTTSHHH----------HSSEEEEECCCTTTCS-----------CCHHHHHHHHHHHC
T ss_pred ---CCCEEEecCcccccccchhhhhhhcC----------CeeEEEEcCcCcccCC-----------cCHHHHHHHHHhcC
Confidence 5688999999988732 111 11111 0011222332211111 36888998886432
Q ss_pred CcEEEEEE-ccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccc-cCCCcccccccccccCCCccee--eeccccCC
Q psy8199 420 NKIAAIII-EPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIA-VGCGRTGKFFACEHAEIWPDFL--CLSKGITG 495 (965)
Q Consensus 420 ~~~aaii~-ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~-tg~gr~G~~~~~~~~~~~pDiv--t~sK~l~g 495 (965)
..+|++ .| . ++++. ++++|+++|++||+++|+||+| +|+...|..... .. ..|++ ++||+++|
T Consensus 186 --~~~i~~~~~-~-~~~~~------~l~~i~~l~~~~g~lli~Dea~~~g~~~~g~~~~~--~~-~~di~~~s~sK~l~G 252 (447)
T 3h7f_A 186 --PKVIIAGWS-A-YPRVL------DFAAFRSIADEVGAKLLVDMAHFAGLVAAGLHPSP--VP-HADVVSTTVHKTLGG 252 (447)
T ss_dssp --CSEEEEECS-S-CCSCC------CHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCS--TT-TCSEEEEESSGGGCC
T ss_pred --CeEEEEcCC-C-CCCcc------CHHHHHHHHHHcCCEEEEECCchhhhhcCCCCCCC--CC-CCcEEEecCCcCCCC
Confidence 234555 56 3 33332 4899999999999999999997 444333432111 11 24666 57899965
Q ss_pred CcccceeeeecHHHHHhhhccCCcccccccCCCCCC-HHHHHHHHHHHHHHhc---ccHHHHHHHHHHHHHHHHHcc-cC
Q psy8199 496 GYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGN-PLACCAALATLEIFNK---DNILQRISQDMKKITKALTSL-IT 570 (965)
Q Consensus 496 G~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~-~~~~aaa~a~L~~~~~---~~~~~~~~~~~~~l~~~L~~l-~~ 570 (965)
++.|++++++++++.+.. ..+.++++++ +..++++.+++..+.+ ++..+++.++.+++.+.|++. .+
T Consensus 253 --~~gG~i~~~~~~~~~l~~------~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~ 324 (447)
T 3h7f_A 253 --GRSGLIVGKQQYAKAINS------AVFPGQQGGPLMHVIAGKAVALKIAATPEFADRQRRTLSGARIIADRLMAPDVA 324 (447)
T ss_dssp --CSCEEEEECGGGHHHHHH------HHTTTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHTSHHHH
T ss_pred --CCeEEEEECHHHHHHHhh------hcCCcccCCccHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 688999999988887754 1223344333 3345555666665433 246778888888998888764 22
Q ss_pred CCceeeee--ceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEe----ec-------CCEEEEeCCcc----cCHHH
Q psy8199 571 HPKIINFR--QKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLR----PI-------GNTVYLMPPYI----LNKNE 633 (965)
Q Consensus 571 ~~~i~~v~--g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~----~~-------~~~lR~~p~~~----~t~~~ 633 (965)
.+++..+. ..+.++.+++. ..+ .....+.+.|.++||++. |. .+.+|+.+|.. +++++
T Consensus 325 ~~g~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~l~~~GI~v~~~~i~~~~~~p~~~~~lRig~~~~~~~~~~~ee 399 (447)
T 3h7f_A 325 KAGVSVVSGGTDVHLVLVDLR-DSP----LDGQAAEDLLHEVGITVNRNAVPNDPRPPMVTSGLRIGTPALATRGFGDTE 399 (447)
T ss_dssp HTTCEEGGGSCSSSEEEEECT-TSS----CCHHHHHHHHHHTTEECBC-------------CEEEEECHHHHHHTCCHHH
T ss_pred CCCeEEecCCCCCCEEEEEcC-CCC----CCHHHHHHHHHHCCeEEecccCCCCCCCCCCCCceeccCHHHhhCCCCHHH
Confidence 23343333 24556666653 111 012345566777899987 33 25799998776 67999
Q ss_pred HHHHHHhhhcccccHHHHHHhcCCCchhHHHHHHHHHHH
Q psy8199 634 IQHMTSAIFQTFNELDEVINLFNLPFNDLLFRAQKVHRK 672 (965)
Q Consensus 634 i~~~~~~l~~~~~~~~e~l~l~~~~~~~l~~~a~~~~~~ 672 (965)
++++++.+.+++.+.++ .+...+.....+++++
T Consensus 400 i~~~~~~l~~~l~~~~~------~~~~~~~~~v~~~~~~ 432 (447)
T 3h7f_A 400 FTEVADIIATALATGSS------VDVSALKDRATRLARA 432 (447)
T ss_dssp HHHHHHHHHHHHHSGGG------CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCc------hhHHHHHHHHHHHHHh
Confidence 99999988776544321 1234445555555443
|
| >2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.79 E-value=2.4e-18 Score=194.40 Aligned_cols=316 Identities=10% Similarity=0.056 Sum_probs=201.0
Q ss_pred CHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCC----CCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCce
Q psy8199 272 NSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQY----KLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKK 347 (965)
Q Consensus 272 ~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~----~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~ 347 (965)
+|++.+|+.+++.. +.. . .......++.+++++.+.. +.++++|++||++|++.+++.+...+ .+++
T Consensus 17 ~~~v~~a~~~~~~~--~~~-~-~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~t~al~~~~~~~~~~~-----~~gd 87 (385)
T 2bkw_A 17 SGAVQKALDVPSLG--HTS-P-EFVSIFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFILSK-----APNK 87 (385)
T ss_dssp CHHHHHTTSCCCCC--TTS-H-HHHHHHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHSCTT-----CSCC
T ss_pred hHHHHHHHhccccc--cCC-H-HHHHHHHHHHHHHHHHhCCCCCCCCceEEEcCchHHHHHHHHHHHhccC-----CCCC
Confidence 56777666544322 110 0 0012344566666666543 24789999999999999999773100 2456
Q ss_pred EEEEE-cCCccCCccccccccCCcCccchhcccCCCeeEecC-CCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEE
Q psy8199 348 KFICL-QNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITT-PDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAI 425 (965)
Q Consensus 348 ~vi~~-~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aai 425 (965)
+|+++ .+.||.+........| ..+..++. +.. +. .|+++|++++++ .++++|
T Consensus 88 ~vlv~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~-~~-----------~d~~~l~~~l~~--~~~~~v 141 (385)
T 2bkw_A 88 NVLVVSTGTFSDRFADCLRSYG------------AQVDVVRPLKIG-ES-----------VPLELITEKLSQ--NSYGAV 141 (385)
T ss_dssp EEEEECSSHHHHHHHHHHHHTT------------CEEEEECCSSTT-SC-----------CCHHHHHHHHHH--SCCSEE
T ss_pred eEEEEcCCcchHHHHHHHHHcC------------CceEEEecCCCC-CC-----------CCHHHHHHHHhc--CCCCEE
Confidence 78777 4566665211111111 13445554 221 11 267889988874 245677
Q ss_pred EEccccccCCCcccCChHHHHHHHHHHHhc--CCeEEEeccccCCCcccccccccccCCCcceee--eccccCCCcccce
Q psy8199 426 IIEPLVQCAGGMIMYDSIYLKLVREICNNY--NIHLIADEIAVGCGRTGKFFACEHAEIWPDFLC--LSKGITGGYLPLS 501 (965)
Q Consensus 426 i~ep~v~~~~G~~~~~~~~l~~l~~l~~~~--g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt--~sK~l~gG~~pig 501 (965)
++++ ++|++|.+.+ +++|.++|++| |+++|+||+|+ +|.. .+... ...+|+++ ++|.++|+ .++|
T Consensus 142 ~~~~-~~nptG~~~~----l~~i~~~~~~~~~~~~li~D~a~~-~~~~--~~~~~--~~~~d~~~~s~~K~~~~~-~G~G 210 (385)
T 2bkw_A 142 TVTH-VDTSTAVLSD----LKAISQAIKQTSPETFFVVDAVCS-IGCE--EFEFD--EWGVDFALTASQKAIGAP-AGLS 210 (385)
T ss_dssp EEES-EETTTTEECC----HHHHHHHHHHHCTTSEEEEECTTT-TTTS--CCCTT--TTTCSEEEEESSSTTCCC-SCEE
T ss_pred EEEc-cCCCcCeEcC----HHHHHHHHHhhCCCCEEEEECccc-cCCc--ccccc--ccCceEEEecCccccccC-Ccce
Confidence 7888 7999999887 89999999999 99999999996 4432 12222 23468775 47988765 4679
Q ss_pred eeeecHHHHH-hhhc-----cCC-------c----cccccc--C-CCCCCHHHHHHHHHHHHHHhcc---cHHHHHHHHH
Q psy8199 502 LVMTTDKIYN-SIYY-----KNN-------I----NIFLHS--H-SYSGNPLACCAALATLEIFNKD---NILQRISQDM 558 (965)
Q Consensus 502 ~v~~~~~i~~-~~~~-----~~~-------~----~~~~~~--~-t~~~~~~~~aaa~a~L~~~~~~---~~~~~~~~~~ 558 (965)
++++++++++ .+.. ... . ..+..+ . .++.++.+++++.++|+.+.+. ...++.+++.
T Consensus 211 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~ 290 (385)
T 2bkw_A 211 ISLCSSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMS 290 (385)
T ss_dssp EEEECHHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred EEEEcHHHHHHHHhhccCCCCCceeecHHHHhhHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 9999988876 4420 000 0 001111 1 1356788888888899876543 4577788888
Q ss_pred HHHHHHH-HcccCCCceeeee------ceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec------CCEEEEe-
Q psy8199 559 KKITKAL-TSLITHPKIINFR------QKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI------GNTVYLM- 624 (965)
Q Consensus 559 ~~l~~~L-~~l~~~~~i~~v~------g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~------~~~lR~~- 624 (965)
+++.+.| +++ ++..+. ..+.++.+.+. + ...+.+.|.++||.+.++ .+++|++
T Consensus 291 ~~l~~~L~~~~----g~~~~~~~~~~~~~~~~~~~~~~--~-------~~~~~~~l~~~gi~v~~g~~~~~~~~~iRis~ 357 (385)
T 2bkw_A 291 DWFKDSLVNGL----QLTSVSRYPSNMSAHGLTAVYVA--D-------PPDVIAFLKSHGVVIAGGIHKDIGPKYIRIGH 357 (385)
T ss_dssp HHHHHHHHTTT----CCEESSCSSSTTBCSSCEEEECS--C-------HHHHHHHHHHTTEECBCCCCTTTGGGEEEECC
T ss_pred HHHHHHHHHhc----CceecccCcccccCCceEEEecC--C-------HHHHHHHHHHCCeEEeCCCCcccCCCEEEEEc
Confidence 9998888 765 222221 24667777653 1 346778888999999873 3689999
Q ss_pred CC---cccCHHHHHHHHHhhhcccc
Q psy8199 625 PP---YILNKNEIQHMTSAIFQTFN 646 (965)
Q Consensus 625 p~---~~~t~~~i~~~~~~l~~~~~ 646 (965)
.+ +..++++++++++++.+.+.
T Consensus 358 ~~~~~~~~~~e~i~~~~~~l~~~~~ 382 (385)
T 2bkw_A 358 MGVTACNKNLPYMKNCFDLIKLALQ 382 (385)
T ss_dssp CGGGTSSTTCTHHHHHHHHHHHHTT
T ss_pred cccccccCCHHHHHHHHHHHHHHHH
Confidence 44 35789999999999876543
|
| >2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=6.3e-18 Score=190.28 Aligned_cols=311 Identities=14% Similarity=0.137 Sum_probs=202.0
Q ss_pred CCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEE
Q psy8199 271 SNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFI 350 (965)
Q Consensus 271 ~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi 350 (965)
.+|++.+|+.++++... ..+.+...++.+.++++++ .+++++++||++|++.+++.++.+ ..++++|+
T Consensus 11 ~~~~v~~a~~~~~~~~~-----~~~~~~~~~l~~~la~~~~--~~~v~~~~ggt~al~~~~~~~~~~-----~~~gd~Vl 78 (375)
T 2fnu_A 11 LDKEDKKAVLEVLNSKQ-----LTQGKRSLLFEEALCEFLG--VKHALVFNSATSALLTLYRNFSEF-----SADRNEII 78 (375)
T ss_dssp CCHHHHHHHHHHHTSSC-----CSSSHHHHHHHHHHHHHHT--CSEEEEESCHHHHHHHHHHHSSCC-----CTTSCEEE
T ss_pred CCHHHHHHHHHHHHcCc-----ccCChHHHHHHHHHHHHhC--CCeEEEeCCHHHHHHHHHHHhccc-----CCCCCEEE
Confidence 58999999999987631 1235677899999999995 459999999999999999977310 02567899
Q ss_pred EEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccc
Q psy8199 351 CLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPL 430 (965)
Q Consensus 351 ~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~ 430 (965)
+.+++||+........+. .+.+++..... . .|+++|++++. +++++|++..
T Consensus 79 ~~~~~~~~~~~~~~~~g~-------------~~~~~~~~~~~-~-----------~d~~~l~~~i~---~~~~~v~~~~- 129 (375)
T 2fnu_A 79 TTPISFVATANMLLESGY-------------TPVFAGIKNDG-N-----------IDELALEKLIN---ERTKAIVSVD- 129 (375)
T ss_dssp ECSSSCTHHHHHHHHTTC-------------EEEECCBCTTS-S-----------BCGGGSGGGCC---TTEEEEEEEC-
T ss_pred ECCCccHhHHHHHHHCCC-------------EEEEeccCCCC-C-----------CCHHHHHhhcC---cCceEEEEeC-
Confidence 999999987543332211 22333332111 1 25677777664 3567666655
Q ss_pred cccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCccee--eec--cccCCCcccceeeeec
Q psy8199 431 VQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL--CLS--KGITGGYLPLSLVMTT 506 (965)
Q Consensus 431 v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDiv--t~s--K~l~gG~~pig~v~~~ 506 (965)
+ +|.+.+ +++|.++|++||+++|+||+|+ +|... .....+..+|++ +|| |.++.| +|+++++
T Consensus 130 ~---tG~~~~----l~~i~~l~~~~~~~li~D~a~~-~~~~~---~~~~~~~~~~i~~~s~s~~K~~~~g---~g~~~~~ 195 (375)
T 2fnu_A 130 Y---AGKSVE----VESVQKLCKKHSLSFLSDSSHA-LGSEY---QNKKVGGFALASVFSFHAIKPITTA---EGGAVVT 195 (375)
T ss_dssp G---GGCCCC----HHHHHHHHHHHTCEEEEECTTC-TTCEE---TTEETTSSSSEEEEECCTTSSSCCS---SCEEEEE
T ss_pred C---cCCccC----HHHHHHHHHHcCCEEEEECccc-cCCeE---CCeeccccCCeEEEeCCCCCCcccc---CceEEEe
Confidence 2 787766 8999999999999999999997 43321 112233223554 677 988553 6777773
Q ss_pred --HHHHHhhhccCC-cc----c-----ccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcccCCCce
Q psy8199 507 --DKIYNSIYYKNN-IN----I-----FLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKI 574 (965)
Q Consensus 507 --~~i~~~~~~~~~-~~----~-----~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~i 574 (965)
+++++.+..-.. .. + ...+.++..+++.+++++..++.+ +...++.+++.+++.+.|+++ +++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~l~~~L~~~---~~~ 270 (375)
T 2fnu_A 196 NDSELHEKMKLFRSHGMLKKDFFEGEVKSIGHNFRLNEIQSALGLSQLKKA--PFLMQKREEAALTYDRIFKDN---PYF 270 (375)
T ss_dssp SCHHHHHHHHHHTBTTEEESSSSCEEESSCCCBCCCCHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHTTC---SSE
T ss_pred CCHHHHHHHHHHHhcCCccccccccccccccccCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC---CCc
Confidence 667665543100 00 0 002233456788777777665443 346778888888888888764 344
Q ss_pred eeeec------eeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEee----c----------------------CCEEE
Q psy8199 575 INFRQ------KGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRP----I----------------------GNTVY 622 (965)
Q Consensus 575 ~~v~g------~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~----~----------------------~~~lR 622 (965)
..... .+.++.+.+. ..+ ......+.+.|.++||.++. . .+.+|
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~l~~~L~~~gi~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~lR 346 (375)
T 2fnu_A 271 TPLHPLLKDKSSNHLYPILMH-QKF---FTCKKLILESLHKRGILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEIS 346 (375)
T ss_dssp EESGGGCSSCCCCSCEEEEEC-GGG---GGGHHHHHHHHHHTTEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEE
T ss_pred cccCCCCCCCcceEEEEEEeC-ccc---cchHHHHHHHHHHCCCCccccccccccchhhhcCCCccCChHHHHHHhCEEE
Confidence 32222 2334455553 110 00245688888999999872 1 15799
Q ss_pred EeCCcccCHHHHHHHHHhhhccc
Q psy8199 623 LMPPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 623 ~~p~~~~t~~~i~~~~~~l~~~~ 645 (965)
++++...++++++++++++.+.+
T Consensus 347 i~~~~~~t~~~i~~~~~~l~~~~ 369 (375)
T 2fnu_A 347 LPCHANLNLESVQNIAHSVLKTF 369 (375)
T ss_dssp ECCCTTCCHHHHHHHHHHHHHHH
T ss_pred ecCCCCCCHHHHHHHHHHHHHHH
Confidence 99998899999999999887654
|
| >1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=2.4e-18 Score=195.23 Aligned_cols=282 Identities=15% Similarity=0.060 Sum_probs=188.2
Q ss_pred CCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCcc
Q psy8199 294 LTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFK 373 (965)
Q Consensus 294 ~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~ 373 (965)
...+...++.+.++++++ .+++++++||++|+..+++.+. .++++|++.++.|+++.....
T Consensus 59 ~~~~~~~~l~~~ia~~~g--~~~~i~~~~g~~ai~~~~~~l~--------~~gd~Vl~~~~~y~~~~~~~~--------- 119 (404)
T 1e5e_A 59 LGNPTVSNLEGKIAFLEK--TEACVATSSGMGAIAATVLTIL--------KAGDHLISDECLYGCTHALFE--------- 119 (404)
T ss_dssp TCCHHHHHHHHHHHHHHT--CSEEEEESSHHHHHHHHHHHHC--------CTTCEEEEESCCCHHHHHHHH---------
T ss_pred CcChHHHHHHHHHHHHhC--CCcEEEeCChHHHHHHHHHHHh--------CCCCEEEEeCCCchhHHHHHH---------
Confidence 456777899999999985 3588999999999999998663 256889999999987632100
Q ss_pred chhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHH
Q psy8199 374 EIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICN 453 (965)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~ 453 (965)
.........+..+|. .|+++|+++++ +++++|++++ ++|++|.+.+ +++|.++|+
T Consensus 120 ~~~~~~g~~~~~v~~-----------------~d~~~l~~~i~---~~t~~v~l~~-p~NptG~v~~----l~~i~~la~ 174 (404)
T 1e5e_A 120 HALTKFGIQVDFINT-----------------AIPGEVKKHMK---PNTKIVYFET-PANPTLKIID----MERVCKDAH 174 (404)
T ss_dssp THHHHTTCEEEEECT-----------------TSTTHHHHHCC---TTEEEEEEES-SCTTTCCCCC----HHHHHHHHH
T ss_pred HHHHHcCCEEEEECC-----------------CCHHHHHHhcC---CCCcEEEEEC-CCCCCCcccC----HHHHHHHHH
Confidence 001111123344443 15677887774 4678888888 8999999886 999999999
Q ss_pred h-cCCeEEEeccccCCCcccccccccccCCCccee--eeccccCCCcccc-eeeeecHHHHH-hhhccCCcccccccC-C
Q psy8199 454 N-YNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL--CLSKGITGGYLPL-SLVMTTDKIYN-SIYYKNNINIFLHSH-S 527 (965)
Q Consensus 454 ~-~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDiv--t~sK~l~gG~~pi-g~v~~~~~i~~-~~~~~~~~~~~~~~~-t 527 (965)
+ ||+++|+||+|+.+... ... + + ..|++ ++||.++++++++ |++++++++++ .+.. ..... +
T Consensus 175 ~~~~~~li~De~~~~~~~~-~~~--~-~--~~di~~~S~sK~~~~~g~ri~G~~~~~~~~~~~~l~~------~~~~~~g 242 (404)
T 1e5e_A 175 SQEGVLVIADNTFCSPMIT-NPV--D-F--GVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMV------GIKDITG 242 (404)
T ss_dssp TSTTCEEEEECTTTCTTTC-CGG--G-G--TCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHT------CCCCCCC
T ss_pred hhcCCEEEEECCCchhhhC-Ccc--c-c--CCEEEEEcCccccCCCCCCeEEEEEECHHHHHHHHHH------HHHhCCC
Confidence 9 99999999999866422 211 1 2 35666 6899998755787 99999998887 6654 12222 3
Q ss_pred CCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHccc-----------CCCceee----eeceeEEEEEEEeecC
Q psy8199 528 YSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLI-----------THPKIIN----FRQKGMIWAFDVIIED 592 (965)
Q Consensus 528 ~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~-----------~~~~i~~----v~g~G~~~~i~~~~~~ 592 (965)
.+.++++++++.++|+.+. ...++..++.+.+.+.|++.. ++|++.. .++.|.|+.+++. +
T Consensus 243 ~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~--~ 318 (404)
T 1e5e_A 243 SVISPHDAWLITRGLSTLN--IRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILK--S 318 (404)
T ss_dssp CCCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEET--T
T ss_pred CCCCHHHHHHHHHhHhHHH--HHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEeC--C
Confidence 5678999999888886432 234444555555555554321 1222221 2345999999774 2
Q ss_pred ccchhhHHHHHHHHHHHcCcEEee---c----------------------------CCEEEEeCCcccCHHHHHHHHHhh
Q psy8199 593 PEQIETFSKKFFVAALKNELLLRP---I----------------------------GNTVYLMPPYILNKNEIQHMTSAI 641 (965)
Q Consensus 593 ~~~~~~~~~~~~~~l~~~Gi~~~~---~----------------------------~~~lR~~p~~~~t~~~i~~~~~~l 641 (965)
. .....+.+.+.||++.. + .+.+||+++. ++++++++.+
T Consensus 319 ----~--~~~~~~~l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~----e~~~~li~~l 388 (404)
T 1e5e_A 319 ----G--FEGAKKLLDNLKLITLAVSLGGCESLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGI----EDADELIADF 388 (404)
T ss_dssp ----H--HHHHHHHHHTCSSSEESSCCCSSSCEEECGGGTTTTTSCHHHHHHTTCCTTEEEEECCS----SCHHHHHHHH
T ss_pred ----C--HHHHHHHHHhCCCceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCC----CCHHHHHHHH
Confidence 1 12344556677875432 1 3689999776 6677777776
Q ss_pred hccc
Q psy8199 642 FQTF 645 (965)
Q Consensus 642 ~~~~ 645 (965)
.+++
T Consensus 389 ~~al 392 (404)
T 1e5e_A 389 KQGL 392 (404)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
|
| >3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.7e-18 Score=196.91 Aligned_cols=329 Identities=14% Similarity=0.101 Sum_probs=191.2
Q ss_pred ccccccccchhccCCCCCHHHHHHHHHHHhh-ccccc-c-----CCCCcHHHHHHH-HHHHhhcCCCCCeE-EEcCChhH
Q psy8199 255 RYLDAISSWWVNLFGHSNSYINKALKNQLNK-LEHVM-L-----SNLTHKPVIKLS-EKLSSLTQYKLGHC-FYGSDGAS 325 (965)
Q Consensus 255 ~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~-~~~~~-~-----~~~~~~~~~~la-~~l~~~~~~~~~~v-~~~~sGse 325 (965)
..+++.++. + +.+|+|++|+.+++.+ ..+.. . .....+...+++ +.+++.++ .+.+ ++++||++
T Consensus 33 ~~i~l~~~~---~--~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~v~~~~Gs~ 105 (425)
T 3ecd_A 33 SQVELIASE---N--IVSRAVLDAQGSVLTNKYAEGYPGKRYYGGCEFADEVEALAIERVKRLFN--AGHANVQPHSGAQ 105 (425)
T ss_dssp HSEECCTTC---C--CCCHHHHHHHTSGGGSSCTTC------------CCHHHHHHHHHHHHHHT--CSEEECCCSSHHH
T ss_pred cceeeeccc---C--CCCHHHHHHHhhhhhcccccCCCcchhcCCChHHHHHHHHHHHHHHHHhC--CCCceeecCchHH
Confidence 356665542 2 2389999999998843 21110 0 011123456666 66777774 4555 45999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCC-cccccc-ccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHH
Q psy8199 326 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGE-TLGALA-VTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEI 403 (965)
Q Consensus 326 A~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (965)
|++.+++.+. .++++|++.+++||+. ..+... ..+. ......++.......
T Consensus 106 a~~~al~~~~--------~~gd~Vi~~~~~~~~~~~~~~~~~~~g~----------~~~~~~~~~~~~~~~--------- 158 (425)
T 3ecd_A 106 ANGAVMLALA--------KPGDTVLGMSLDAGGHLTHGAKPALSGK----------WFNALQYGVSRDTML--------- 158 (425)
T ss_dssp HHHHHHHHHC--------CTTCEEEEECC----------------------------CEEEEECCCTTTSS---------
T ss_pred HHHHHHHHcc--------CCCCEEEEcccccccceecchhhhhccc----------ceeeeecCCCcccCc---------
Confidence 9999998773 3678999999999882 222211 1110 001122332211111
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccc-cCCCcccccccccccCC
Q psy8199 404 ARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIA-VGCGRTGKFFACEHAEI 482 (965)
Q Consensus 404 ~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~-tg~gr~G~~~~~~~~~~ 482 (965)
.|+++|++++.+. ++++|++++ .++ |...+ +++|+++|++||+++|+||+| +|+.+.|..+.. ..
T Consensus 159 --~d~~~l~~~i~~~--~~~~v~~~~-~~~--~~~~~----l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~--~~- 224 (425)
T 3ecd_A 159 --IDYDQVEALAQQH--KPSLIIAGF-SAY--PRKLD----FARFRAIADSVGAKLMVDMAHIAGVIAAGRHANP--VE- 224 (425)
T ss_dssp --CCHHHHHHHHHHH--CCSEEEEEC-SCC--CSCCC----HHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCG--GG-
T ss_pred --cCHHHHHHHHhhc--CCcEEEEcc-ccC--CCcCC----HHHHHHHHHHcCCEEEEECcChHhhhhcccccCc--hh-
Confidence 2678899888642 345666763 233 33333 899999999999999999995 444334432221 11
Q ss_pred Cccee--eeccccCCCcccceeeeec-HHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHH-Hhc--ccHHHHHHH
Q psy8199 483 WPDFL--CLSKGITGGYLPLSLVMTT-DKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEI-FNK--DNILQRISQ 556 (965)
Q Consensus 483 ~pDiv--t~sK~l~gG~~pig~v~~~-~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~-~~~--~~~~~~~~~ 556 (965)
.+|++ ++||+++| ++.|+++++ +++.+.+... ..++.+.+.++..++++.+++.. +.+ +++.+++++
T Consensus 225 ~~di~~~s~sK~l~g--~~~g~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~ 297 (425)
T 3ecd_A 225 HAHVVTSTTHKTLRG--PRGGFVLTNDEEIAKKINSA-----VFPGLQGGPLMHVIAGKAVAFGEALTDDFKTYIDRVLA 297 (425)
T ss_dssp TCSEEEEESSGGGCC--CSCEEEEESCHHHHHHHHHH-----HC-----CCCHHHHHHHHHHHHHHTSHHHHHHHHHHHH
T ss_pred cCcEEEecCCcccCC--CCcEEEEeCCHHHHHHHHhh-----hCccccCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 15776 46699965 478998887 5666666431 11222223344444444444443 322 357788888
Q ss_pred HHHHHHHHHHcccCCCceeeee--ceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEe----ec-------CCEEEE
Q psy8199 557 DMKKITKALTSLITHPKIINFR--QKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLR----PI-------GNTVYL 623 (965)
Q Consensus 557 ~~~~l~~~L~~l~~~~~i~~v~--g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~----~~-------~~~lR~ 623 (965)
+.+++.+.|.+. ++..+. +.+.++.+.+. .. ......+.+.|.++||++. |+ .+.+|+
T Consensus 298 ~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~l~~~gi~v~~~~~p~~~~~~~~~~~iRi 368 (425)
T 3ecd_A 298 NAQALGDVLKAG----GVDLVTGGTDNHLLLVDLR-PK----GLKGAQVEQALERAGITCNKNGIPFDPEKPTITSGIRL 368 (425)
T ss_dssp HHHHHHHHHHHT----TCEEGGGSCSSSEEEEECG-GG----TCCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEE
T ss_pred HHHHHHHHHHhC----CCeeccCCCCceEEEEEeC-CC----CCCHHHHHHHHHHcCCEecccccCCCCCCCCCccceec
Confidence 899999988764 333332 35667777664 11 1113456778889999998 42 147999
Q ss_pred eCCcccC----HHHHHHHHHhhhccccc
Q psy8199 624 MPPYILN----KNEIQHMTSAIFQTFNE 647 (965)
Q Consensus 624 ~p~~~~t----~~~i~~~~~~l~~~~~~ 647 (965)
+++...+ +++++++++.+.+++..
T Consensus 369 ~~~~~~~~~~~~e~i~~~~~~l~~~l~~ 396 (425)
T 3ecd_A 369 GTPAGTTRGFGAAEFREVGRLILEVFEA 396 (425)
T ss_dssp ESHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred cchhheeccCCHHHHHHHHHHHHHHHhc
Confidence 9776655 89999999988766543
|
| >1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.78 E-value=6.4e-18 Score=186.77 Aligned_cols=276 Identities=14% Similarity=0.067 Sum_probs=185.2
Q ss_pred HHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccC
Q psy8199 301 KLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLL 380 (965)
Q Consensus 301 ~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~ 380 (965)
++++++++.++. +.+++++||++|++.+++.+. .++++|++.++.||+.......... ...
T Consensus 2 ~l~~~la~~~g~--~~~i~~~sG~~a~~~~~~~~~--------~~g~~v~~~~~~~~~~~~~~~~~~~---------~~g 62 (331)
T 1pff_A 2 ALEGKIAKLEHA--EACAATASGMGAIAASVWTFL--------KAGDHLISDDCLYGCTHALFEHQLR---------KFG 62 (331)
T ss_dssp HHHHHHHHHHTC--SEEEEESSHHHHHHHHHHHHC--------CTTCEEEEESCCCHHHHHHHHTHHH---------HTT
T ss_pred hHHHHHHHHhCC--CeEEEeCChHHHHHHHHHHhc--------CCCCEEEEcCCCcchHHHHHHHHHH---------hcC
Confidence 577888888863 477778888999999998663 2567899999999886332211000 001
Q ss_pred CCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHh-cCCeE
Q psy8199 381 NKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNN-YNIHL 459 (965)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~-~g~ll 459 (965)
..+.+++. .|+++++++++ +++++|++++ ++|++|.+.+ +++|.++|++ ||+++
T Consensus 63 ~~~~~~~~-----------------~d~~~l~~~i~---~~~~~v~~~~-~~nptG~~~~----~~~i~~~~~~~~~~~l 117 (331)
T 1pff_A 63 VEVDFIDM-----------------AVPGNIEKHLK---PNTRIVYFET-PANPTLKVID----IEDAVKQARKQKDILV 117 (331)
T ss_dssp CEEEEECT-----------------TSTTHHHHTCC---TTEEEEEEES-SCTTTCCCCC----HHHHHHHHTTSSSCEE
T ss_pred CEEEEeCC-----------------CCHHHHHHhhc---CCCeEEEEEC-CCCCcCcccC----HHHHHHHHhhhcCCEE
Confidence 12333332 25577777764 4678888988 8999999886 9999999999 99999
Q ss_pred EEeccccCCCcccccccccccCCCccee--eeccccCCCccc-ceeeeecH-HHHHhhhccCCccccccc-CCCCCCHHH
Q psy8199 460 IADEIAVGCGRTGKFFACEHAEIWPDFL--CLSKGITGGYLP-LSLVMTTD-KIYNSIYYKNNINIFLHS-HSYSGNPLA 534 (965)
Q Consensus 460 I~DEv~tg~gr~G~~~~~~~~~~~pDiv--t~sK~l~gG~~p-ig~v~~~~-~i~~~~~~~~~~~~~~~~-~t~~~~~~~ 534 (965)
|+||+|+. |.... .. .++ +|++ +++|.++++..+ +|++++++ ++++.+.. ..++ .+.+.++++
T Consensus 118 i~D~a~~~-~~~~~--~~-~~~--~d~~~~s~~K~~~~~~~r~~G~~~~~~~~~~~~l~~------~~~~~~~~~~~~~~ 185 (331)
T 1pff_A 118 IVDNTFAS-PILTN--PL-DLG--VDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQ------GIKDITGAIISPHD 185 (331)
T ss_dssp EEECTTTH-HHHCC--GG-GGT--CSEEEEETTTTTSSSSSCCCEEEEECHHHHHHHHHT------CCCCCCCCCCCHHH
T ss_pred EEECCCcc-cccCC--hh-hcC--CcEEEEECccccCCCCCceEEEEEeCcHHHHHHHHH------HHHhhcCCCCCHHH
Confidence 99999973 22211 11 233 5655 589999875467 78999998 88887765 2333 456788999
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcc-----------cCCCcee----eeeceeEEEEEEEeecCccchhhH
Q psy8199 535 CCAALATLEIFNKDNILQRISQDMKKITKALTSL-----------ITHPKII----NFRQKGMIWAFDVIIEDPEQIETF 599 (965)
Q Consensus 535 ~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l-----------~~~~~i~----~v~g~G~~~~i~~~~~~~~~~~~~ 599 (965)
++++.++++.+.. ..+...++.+.+.+.+++. .+.|++. ..++.|.++.+.+. +
T Consensus 186 ~~~~~~~l~~~~~--~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~------- 254 (331)
T 1pff_A 186 AWLITRGTLTLDM--RVKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVD--G------- 254 (331)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHCTTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECS--S-------
T ss_pred HHHHHcCcchHHH--HHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEC--C-------
Confidence 8888888875432 2233333444444444321 1122221 12356788888763 2
Q ss_pred HHHHHHHHHHcCcEEeec-------------------------------CCEEEEeCCcccCHHHHHHHHHhhhc
Q psy8199 600 SKKFFVAALKNELLLRPI-------------------------------GNTVYLMPPYILNKNEIQHMTSAIFQ 643 (965)
Q Consensus 600 ~~~~~~~l~~~Gi~~~~~-------------------------------~~~lR~~p~~~~t~~~i~~~~~~l~~ 643 (965)
...+.+.+.+.||++++. .+.+|++++...++++++.+.+.+.+
T Consensus 255 ~~~~~~~l~~~gI~~~~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~t~~~i~~l~~~l~~ 329 (331)
T 1pff_A 255 LEKAKKVLDNCHVVSLAVSLGGPESLIQHPASMTHAGVPKEEREAAGLTDNLIRLSVGCENVQDIIDDLKQALDL 329 (331)
T ss_dssp HHHHHHHHHTCSSSEECSSCCSSSCEEECHHHHTSTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCceeccCCCCcceeeecchhhcccccCHHHHHhcCCCCCeEEEEEecCCHHHHHHHHHHHHHH
Confidence 234667788899966432 36999999999999999999988764
|
| >2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.78 E-value=4.2e-17 Score=186.79 Aligned_cols=319 Identities=11% Similarity=0.084 Sum_probs=204.9
Q ss_pred ccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCC
Q psy8199 266 NLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLN 345 (965)
Q Consensus 266 ~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~ 345 (965)
..++ .+|++.+++.++++.. .+. ...+...++.+.++++++ .+++++++||++|++.+++.+. .
T Consensus 26 p~~~-~p~~~~~a~~~~~~~~-~y~---~~~~~~~~l~~~la~~~~--~~~v~~~~ggt~al~~~l~~l~---------~ 89 (424)
T 2po3_A 26 PNRI-DRARLYERLDRALDSQ-WLS---NGGPLVREFEERVAGLAG--VRHAVATCNATAGLQLLAHAAG---------L 89 (424)
T ss_dssp CCCC-CHHHHHHHHHHHHHHT-CCS---SSCHHHHHHHHHHHHHHT--SSEEEEESCHHHHHHHHHHHHT---------C
T ss_pred CCCC-ChHHHHHHHHHHHhcC-Ccc---cCCHHHHHHHHHHHHHhC--CCeEEEeCCHHHHHHHHHHHcC---------C
Confidence 3455 3678999998888653 111 114778899999999995 4799999999999999998762 2
Q ss_pred ceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEE
Q psy8199 346 KKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAI 425 (965)
Q Consensus 346 ~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aai 425 (965)
+++|++.+++|+++....... | ..+..++.....+. .|+++|++++. +++++|
T Consensus 90 gd~Vlv~~~~~~~~~~~~~~~-G------------~~~~~v~~~~~~~~-----------~d~~~l~~~i~---~~~~~v 142 (424)
T 2po3_A 90 TGEVIMPSMTFAATPHALRWI-G------------LTPVFADIDPDTGN-----------LDPDQVAAAVT---PRTSAV 142 (424)
T ss_dssp CSEEEEESSSCTHHHHHHHHT-T------------CEEEEECBCTTTSS-----------BCHHHHGGGCC---TTEEEE
T ss_pred CCEEEECCCccHHHHHHHHHc-C------------CEEEEEecCCCcCC-----------cCHHHHHHhhC---cCCcEE
Confidence 478999999999875432221 1 12334443211111 26778877764 356666
Q ss_pred EEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEecccc-CCCcccccccccccCCCcceeeec----cccCCCcccc
Q psy8199 426 IIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAV-GCGRTGKFFACEHAEIWPDFLCLS----KGITGGYLPL 500 (965)
Q Consensus 426 i~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-g~gr~G~~~~~~~~~~~pDivt~s----K~l~gG~~pi 500 (965)
++.+ ++|...+ +++|.++|++||+++|+||+|+ |+...|.. .+..+|++++| |++++ +++
T Consensus 143 ~~~~----~tG~~~~----l~~i~~la~~~~~~li~Dea~~~g~~~~~~~-----~~~~~di~~~S~sk~K~l~~--~~~ 207 (424)
T 2po3_A 143 VGVH----LWGRPCA----ADQLRKVADEHGLRLYFDAAHALGCAVDGRP-----AGSLGDAEVFSFHATKAVNA--FEG 207 (424)
T ss_dssp EEEC----GGGCCCC----HHHHHHHHHHTTCEEEEECTTCTTCEETTEE-----TTSSSSEEEEECCTTSSSCC--SSC
T ss_pred EEEC----CCCCcCC----HHHHHHHHHHcCCEEEEECccccCCeECCee-----cccccCEEEEeCCCCCCccC--CCC
Confidence 6533 4666544 9999999999999999999998 66544432 22235777655 88877 489
Q ss_pred eeeeec-HHHHHhhhcc---CCcccc---cccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcccCCCc
Q psy8199 501 SLVMTT-DKIYNSIYYK---NNINIF---LHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPK 573 (965)
Q Consensus 501 g~v~~~-~~i~~~~~~~---~~~~~~---~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~ 573 (965)
|+++++ +++++.+..- +....+ ..+.++..+++++++++..++.++ ...++.+++.+++.+.|.++ ++
T Consensus 208 G~~v~~~~~l~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~~~~~~--~~~~~~~~~~~~l~~~L~~~---~g 282 (424)
T 2po3_A 208 GAVVTDDADLAARIRALHNFGFDLPGGSPAGGTNAKMSEAAAAMGLTSLDAFP--EVIDRNRRNHAAYREHLADL---PG 282 (424)
T ss_dssp EEEEESCHHHHHHHHHHHBTTTTCTTCCTTCCCBCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTCSC---TT
T ss_pred eEEEeCCHHHHHHHHHHHhcCccccccccccCcCCCcCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhccC---CC
Confidence 999998 7887766431 100000 112233446788777777665543 35666777777777776543 44
Q ss_pred eeeee-cee-----EEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec-C-------------------------CEE
Q psy8199 574 IINFR-QKG-----MIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-G-------------------------NTV 621 (965)
Q Consensus 574 i~~v~-g~G-----~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-~-------------------------~~l 621 (965)
+..+. +.| .++.+.+. +... ......+.+.|.++||.+.+. . +.+
T Consensus 283 ~~~~~~~~~~~~~~~~~~i~~~--~~~~-~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~g~~~~~~~~r~~~~~l 359 (424)
T 2po3_A 283 VLVADHDRHGLNNHQYVIVEID--EATT-GIHRDLVMEVLKAEGVHTRAYFSPGCHELEPYRGQPHAPLPHTERLAARVL 359 (424)
T ss_dssp EEECCGGGGSCCCCCCEEEEEC--HHHH-SSCHHHHHHHHHHTTEECBCTTCSCGGGSTTTTTSCCCCCHHHHHHHTTEE
T ss_pred ccccCCCCCCccccEEEEEEEC--Cccc-hhhHHHHHHHHHHCCCceecccCCccccchhhhhcCCCCChhHHHHhcCEE
Confidence 44332 222 34445543 1000 001346778889999998752 1 127
Q ss_pred EEeCCcccCHHHHHHHHHhhhcccccHHH
Q psy8199 622 YLMPPYILNKNEIQHMTSAIFQTFNELDE 650 (965)
Q Consensus 622 R~~p~~~~t~~~i~~~~~~l~~~~~~~~e 650 (965)
|+.+...+++++++++++++.+.+....+
T Consensus 360 ~l~~~~~~t~e~i~~~~~~L~~~~~~~~~ 388 (424)
T 2po3_A 360 SLPTGTAIGDDDIRRVADLLRLCATRGRE 388 (424)
T ss_dssp EECCSTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EeeCCCCCCHHHHHHHHHHHHHHHhhhHH
Confidence 77767899999999999998876544433
|
| >1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.4e-17 Score=188.41 Aligned_cols=312 Identities=13% Similarity=0.139 Sum_probs=201.2
Q ss_pred CHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEE
Q psy8199 272 NSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFIC 351 (965)
Q Consensus 272 ~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~ 351 (965)
+|++.+|+.++++... ...+..+...++.+.++++++. ++.++++||++|++.+++.+.. .++++|++
T Consensus 16 ~~~~~~a~~~~l~~~~---~~~~~~~~~~~l~~~la~~~~~--~~~i~~~sGt~al~~~l~~l~~-------~~gd~Vi~ 83 (388)
T 1b9h_A 16 DDAERNGLVRALEQGQ---WWRMGGDEVNSFEREFAAHHGA--AHALAVTNGTHALELALQVMGV-------GPGTEVIV 83 (388)
T ss_dssp CHHHHHHHHHHHHTSC---CBTTTCSHHHHHHHHHHHHTTC--SEEEEESCHHHHHHHHHHHTTC-------CTTCEEEE
T ss_pred CHHHHHHHHHHHHcCC---eeecCCHHHHHHHHHHHHHhCC--CeEEEeCCHHHHHHHHHHHcCC-------CCcCEEEE
Confidence 4899999999987631 1234457788999999999963 4666667789999999987621 25678999
Q ss_pred EcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEcccc
Q psy8199 352 LQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLV 431 (965)
Q Consensus 352 ~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v 431 (965)
.+++||+........+ ..+.+++.....+. .|+++|++++. +++++|+ |
T Consensus 84 ~~~~~~~~~~~~~~~g-------------~~~~~v~~~~~~~~-----------~d~~~l~~~i~---~~~~~v~--~-- 132 (388)
T 1b9h_A 84 PAFTFISSSQAAQRLG-------------AVTVPVDVDAATYN-----------LDPEAVAAAVT---PRTKVIM--P-- 132 (388)
T ss_dssp ESSSCTHHHHHHHHTT-------------CEEEEECBCTTTCC-----------BCHHHHHHHCC---TTEEEEC--C--
T ss_pred CCCccHHHHHHHHHcC-------------CEEEEEecCCCcCC-----------CCHHHHHHhcC---cCceEEE--E--
Confidence 9999998854332221 12334443221111 26788888874 3566666 6
Q ss_pred ccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccC-CCcccccccccccCCCcceeeec--cccCCCcccceeeeecHH
Q psy8199 432 QCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVG-CGRTGKFFACEHAEIWPDFLCLS--KGITGGYLPLSLVMTTDK 508 (965)
Q Consensus 432 ~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg-~gr~G~~~~~~~~~~~pDivt~s--K~l~gG~~pig~v~~~~~ 508 (965)
+|++|.+.+ +++|.++|++||+++|+||+|+. +...|.. ...++ ..++.+|| |+++|| ++|+++++++
T Consensus 133 ~n~tG~~~~----l~~i~~la~~~~~~li~D~a~~~g~~~~~~~--~~~~~-~i~~~S~s~~K~l~g~--~~G~~~~~~~ 203 (388)
T 1b9h_A 133 VHMAGLMAD----MDALAKISADTGVPLLQDAAHAHGARWQGKR--VGELD-SIATFSFQNGKLMTAG--EGGAVVFPDG 203 (388)
T ss_dssp BCGGGCCCC----HHHHHHHHHHHTCCBCEECTTCTTCEETTEE--GGGSS-SCEEEECCTTSSSCSS--SCEEEEECTT
T ss_pred eCCccCcCC----HHHHHHHHHHcCCEEEEecchhcCCccCCee--ccccc-ceEEEEccCCCcccCC--CeEEEEECCH
Confidence 667888776 89999999999999999999972 3222221 22222 12344555 778774 6888888875
Q ss_pred -H--HHhhhc--cCCc----ccc---cccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcccCCCceee
Q psy8199 509 -I--YNSIYY--KNNI----NIF---LHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIIN 576 (965)
Q Consensus 509 -i--~~~~~~--~~~~----~~~---~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~i~~ 576 (965)
+ ++.+.. .... ..+ ..++++..+++.++++.+.++.++ ...++.+++.+++.+.|+++ |++..
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~~~~l~--~~~~~~~~~~~~l~~~L~~~---~~~~~ 278 (388)
T 1b9h_A 204 ETEKYETAFLRHSCGRPRDDRRYFHKIAGSNMRLNEFSASVLRAQLARLD--EQIAVRDERWTLLSRLLGAI---DGVVP 278 (388)
T ss_dssp CHHHHHHHHHHTBTTCCTTCSSCCCCSCCCBCBCBHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHHTS---TTCEE
T ss_pred HHHHHHHHHHHHhCCCCccCccceeecccccCCcCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhccC---CCccc
Confidence 6 555432 1000 001 112334467777777777666553 25677778888888888765 33332
Q ss_pred e-------eceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecC-------------------------------
Q psy8199 577 F-------RQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG------------------------------- 618 (965)
Q Consensus 577 v-------~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~------------------------------- 618 (965)
. +..+.++.+.+. .. .......+.+.|.++||.+++.-
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (388)
T 1b9h_A 279 QGGDVRADRNSHYMAMFRIP--GL--TEERRNALVDRLVEAGLPAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDA 354 (388)
T ss_dssp CCCCTTCCBCCCSEEEEECT--TC--CHHHHHHHHHHHHHTTCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHH
T ss_pred cCCCcCCCccceEEEEEEeC--Cc--CcccHHHHHHHHHHCCCCcccccCccccChHhHhcCCCcccccccccCCHHHHH
Confidence 2 223567777664 10 00124568888999999886421
Q ss_pred ---CEEEEeCCccc-CHHHHHHHHHhhhcc
Q psy8199 619 ---NTVYLMPPYIL-NKNEIQHMTSAIFQT 644 (965)
Q Consensus 619 ---~~lR~~p~~~~-t~~~i~~~~~~l~~~ 644 (965)
+.+||+....+ ++++++.+++.+.+.
T Consensus 355 ~~~~~l~l~~~~~~~t~edi~~~~~~l~~~ 384 (388)
T 1b9h_A 355 ISSDCVWLHHRVLLAGEPELHATAEIIADA 384 (388)
T ss_dssp HHHHEEEEEGGGGGSCHHHHHHHHHHHHHH
T ss_pred HHhCeEEecCCCCCCCHHHHHHHHHHHHHH
Confidence 25888877778 899999988887654
|
| >3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=5.5e-18 Score=197.37 Aligned_cols=333 Identities=11% Similarity=0.067 Sum_probs=211.6
Q ss_pred CCHHHHHHHHHHHhhc-----cccccCCCCcHHHHHHHHHHHhhcC---CCCCeEEEcCChhHHHHHHHHHHHHHHHhcC
Q psy8199 271 SNSYINKALKNQLNKL-----EHVMLSNLTHKPVIKLSEKLSSLTQ---YKLGHCFYGSDGASAVEVALKMSFHYWYNKG 342 (965)
Q Consensus 271 ~~p~v~~av~~~~~~~-----~~~~~~~~~~~~~~~la~~l~~~~~---~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g 342 (965)
.+.++.+++.+++... ..|..+.+..+.+..+++.+.+..+ ...+++++++|+++|+..++++... .|
T Consensus 102 ~P~~~~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~gG~~~~~~~i~~t~G~~~ai~~~~~~l~~----~g 177 (498)
T 3ihj_A 102 FPEDAKKRARRILQACGGNSLGSYSASQGVNCIREDVAAYITRRDGGVPADPDNIYLTTGASDGISTILKILVS----GG 177 (498)
T ss_dssp SCHHHHHHHHHHHHHC----------CCSCHHHHHHHHHHHHHHTTTCCCCGGGEEEESSHHHHHHHHHHHHCC----CC
T ss_pred CCHHHHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCCCCCcccEEEcCCHHHHHHHHHHHHcC----CC
Confidence 4677778887777652 2234445566778888888887653 3567999999999999999987642 01
Q ss_pred CCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCC--
Q psy8199 343 FLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHN-- 420 (965)
Q Consensus 343 ~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~-- 420 (965)
..+++.|++..++|+.+.......+. ..+.++........ .|+++|++++++...
T Consensus 178 d~~~d~Vlv~~p~y~~~~~~~~~~g~-------------~~v~~~~~~~~~~~----------~d~~~le~~l~~~~~~~ 234 (498)
T 3ihj_A 178 GKSRTGVMIPIPQYPLYSAVISELDA-------------IQVNYYLDEENCWA----------LNVNELRRAVQEAKDHC 234 (498)
T ss_dssp GGGSEEEEEEESCCTHHHHHHHHTTC-------------EEEEEECBGGGTTB----------CCHHHHHHHHHHHTTTS
T ss_pred CCCCCEEEEeCCCchhHHHHHHHcCC-------------EEEEeeccccccCC----------CCHHHHHHHHHhhhccC
Confidence 00135899999999887443333222 22233321110000 268899999875321
Q ss_pred cEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccc--ccccccc--CCC------ccee---
Q psy8199 421 KIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK--FFACEHA--EIW------PDFL--- 487 (965)
Q Consensus 421 ~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~--~~~~~~~--~~~------pDiv--- 487 (965)
++.+|++.. ++|++|.+. +.+.+++|.++|++||+++|+||+|..+...+. +..+... ++. .+++
T Consensus 235 ~~k~i~l~n-p~NPTG~v~-s~~~l~~i~~la~~~~~~li~De~y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~ 312 (498)
T 3ihj_A 235 DPKVLCIIN-PGNPTGQVQ-SRKCIEDVIHFAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFH 312 (498)
T ss_dssp EEEEEEEES-SCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEE
T ss_pred CCeEEEEEC-CCCCCCCcC-CHHHHHHHHHHHHHcCcEEEEEcCccccccCCCCCcCCHHHHHHHhcccccCceeEEEEe
Confidence 355555444 599999876 677799999999999999999999987644321 2222111 111 1222
Q ss_pred eeccccC--CCcccceeee---ecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHH-----------HHh-cccH
Q psy8199 488 CLSKGIT--GGYLPLSLVM---TTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLE-----------IFN-KDNI 550 (965)
Q Consensus 488 t~sK~l~--gG~~pig~v~---~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~-----------~~~-~~~~ 550 (965)
+|||++. .| +++|+++ +++++++.+.. ......+.+.++++++.++++ .+. ....
T Consensus 313 S~SK~~~G~~G-~R~G~~~~~~~~~~l~~~l~~-------~~~~~~~~~~~~q~a~~~~l~~~~~g~~~~~~~~~~~~~~ 384 (498)
T 3ihj_A 313 STSKGYMGECG-YRGGYMEVINLHPEIKGQLVK-------LLSVRLCPPVSGQAAMDIVVNPPVAGEESFEQFSREKESV 384 (498)
T ss_dssp ESSSSTTCCSS-SCCEEEEEESCCHHHHHHHHH-------HHHHSCCCCHHHHHHHHHHTCCCCTTSTTHHHHHHHHHHH
T ss_pred ccccccccCcc-cceEEEEEecCCHHHHHHHHH-------HHhccCCCCHHHHHHHHHHhcCCccCcccHHHHHHHHHHH
Confidence 6899994 35 8999998 68888888765 123345567888887776663 121 1234
Q ss_pred HHHHHHHHHHHHHHHHcccCCCceeeeeceeEEEEE-EEeecCccch-------hhHHHH--HHHHHHHcCcEEeec---
Q psy8199 551 LQRISQDMKKITKALTSLITHPKIINFRQKGMIWAF-DVIIEDPEQI-------ETFSKK--FFVAALKNELLLRPI--- 617 (965)
Q Consensus 551 ~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~G~~~~i-~~~~~~~~~~-------~~~~~~--~~~~l~~~Gi~~~~~--- 617 (965)
.++++++.+++.+.|+++ |++..+.+.|.|+.+ .+. .+... ....+. +.+.+.++||++.|+
T Consensus 385 ~~~l~~~~~~l~~~L~~~---~g~~~~~p~gg~~~~~~l~--~p~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pG~~f 459 (498)
T 3ihj_A 385 LGNLAKKAKLTEDLFNQV---PGIHCNPLQGAMYAFPRIF--IPAKAVEAAQAHQMAPDMFYCMKLLEETGICVVPGSGF 459 (498)
T ss_dssp HHHHHHHHHHHHHHHHTS---TTEECCCCCBSSEECCEEC--CCHHHHHHHHHTTSCHHHHHHHHHHHHHCBCCEEGGGT
T ss_pred HHHHHHHHHHHHHHHhcC---CCcEecCCCeEEEEEEecc--CchhhhHHHHhcCCCcHHHHHHHHHHHCCEEEEeCccc
Confidence 566777777777777654 677777777776655 332 11000 000122 345566889999873
Q ss_pred -----CCEEEEeCCcccCHHHHHHHHHhhhccccc
Q psy8199 618 -----GNTVYLMPPYILNKNEIQHMTSAIFQTFNE 647 (965)
Q Consensus 618 -----~~~lR~~p~~~~t~~~i~~~~~~l~~~~~~ 647 (965)
.+++|++. ..++++++++++++.+...+
T Consensus 460 ~~~~~~~~~Ris~--~~~~e~l~~~i~~L~~~~~~ 492 (498)
T 3ihj_A 460 GQREGTYHFRMTI--LPPVEKLKTVLQKVKDFHIN 492 (498)
T ss_dssp CCCTTCCBEEEEC--CSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCEEEEEe--CCCHHHHHHHHHHHHHHHHH
Confidence 14899994 58999999999998765543
|
| >2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.78 E-value=4.3e-18 Score=194.34 Aligned_cols=244 Identities=15% Similarity=0.106 Sum_probs=165.8
Q ss_pred CCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcC
Q psy8199 292 SNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQS 371 (965)
Q Consensus 292 ~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~ 371 (965)
+.+.++...+++++++++++ .+..++++||++|++.+++.+. .++++||+.++.||+.......+.
T Consensus 53 ~~~~~~~~~~l~~~la~~~g--~~~~v~~~sGt~A~~~~l~~~~--------~~gd~vi~~~~~~~~~~~~~~~~~---- 118 (421)
T 2ctz_A 53 SRIMNPTVDVLEKRLAALEG--GKAALATASGHAAQFLALTTLA--------QAGDNIVSTPNLYGGTFNQFKVTL---- 118 (421)
T ss_dssp BTTBCHHHHHHHHHHHHHHT--CSEEEEESSHHHHHHHHHHHHC--------CTTCEEEECSCCCHHHHHHHHTHH----
T ss_pred cCCCChHHHHHHHHHHHHhC--CCceEEecCHHHHHHHHHHHHh--------CCCCEEEEeCCCchHHHHHHHHHH----
Confidence 44567888999999999996 3467788889999999999763 357899999999998743321110
Q ss_pred ccchhcccCCCeeEe-cCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHH
Q psy8199 372 FKEIYTSLLNKTYII-TTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVRE 450 (965)
Q Consensus 372 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~ 450 (965)
......+.++ +. .|+++|+++++ +++++|++|+ ++|++|.+.+ +++|.+
T Consensus 119 -----~~~g~~~~~~~~~-----------------~d~~~l~~~i~---~~~~~v~~~~-~~n~~G~~~~----l~~i~~ 168 (421)
T 2ctz_A 119 -----KRLGIEVRFTSRE-----------------ERPEEFLALTD---EKTRAWWVES-IGNPALNIPD----LEALAQ 168 (421)
T ss_dssp -----HHTTCEEEECCTT-----------------CCHHHHHHHCC---TTEEEEEEES-SCTTTCCCCC----HHHHHH
T ss_pred -----HHcCCEEEEECCC-----------------CCHHHHHHhhc---cCCeEEEEEC-CCCCCCcccC----HHHHHH
Confidence 0011123333 22 25788888875 4688999999 9999998887 999999
Q ss_pred HHHhcCCeEEEeccccCCCcccccccccccCCCccee--eeccccCCCcccceeeeecH---HH----HHhhhcc---CC
Q psy8199 451 ICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL--CLSKGITGGYLPLSLVMTTD---KI----YNSIYYK---NN 518 (965)
Q Consensus 451 l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDiv--t~sK~l~gG~~pig~v~~~~---~i----~~~~~~~---~~ 518 (965)
+|++||+++|+||+|+++|..+..+ +..+|++ +++|.+++.+.++|++++.+ ++ ++.+... +.
T Consensus 169 ~a~~~g~~livD~~~~~~g~~~~~~-----~~~~Di~~~s~~K~l~~~g~~~G~~~~~~~~~~~~~~~~~~l~~~~~g~~ 243 (421)
T 2ctz_A 169 AAREKGVALIVDNTFGMGGYLLRPL-----AWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYH 243 (421)
T ss_dssp HHHHHTCEEEEECGGGGGGTSCCGG-----GGTCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGT
T ss_pred HHHHcCCEEEEECCcccccccCCcc-----ccCCeEEEECCcccccCCCCcEEEEEEeccchhhcccchhhhccccchhh
Confidence 9999999999999996676554432 3458988 68899987446888877741 22 1222110 00
Q ss_pred -cc--------------c--ccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcccCCCceeee----
Q psy8199 519 -IN--------------I--FLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINF---- 577 (965)
Q Consensus 519 -~~--------------~--~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v---- 577 (965)
.. . .........+|+.++++++.|+.+.. ..++..++.+++.+.|++. |++..+
T Consensus 244 g~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~a~~~~~~l~~l~~--r~~~~~~~a~~l~~~L~~~---p~v~~v~~p~ 318 (421)
T 2ctz_A 244 GLRLTEAFGELAFIVKARVDGLRDQGQALGPFEAWVVLLGMETLSL--RAERHVENTLHLAHWLLEQ---PQVAWVNYPG 318 (421)
T ss_dssp TBCHHHHHGGGHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHTTHHH--HHHHHHHHHHHHHHHHHTC---TTEEEEECTT
T ss_pred hhhhhhhcchhHHHHHHHHHHHHhcCCCCCHHHHHHHHcCcchHHH--HHHHHHHhHHHHHHHHHhC---CCeeEEECCC
Confidence 00 0 00112246789988888888875532 3455556777777777654 444433
Q ss_pred ---------------eceeEEEEEEEe
Q psy8199 578 ---------------RQKGMIWAFDVI 589 (965)
Q Consensus 578 ---------------~g~G~~~~i~~~ 589 (965)
++.|.+++|++.
T Consensus 319 ~~~~~~~~~~~~~~~~~~g~ivsf~l~ 345 (421)
T 2ctz_A 319 LPHHPHHDRAQKYFKGKPGAVLTFGLK 345 (421)
T ss_dssp STTCTTHHHHHHHHTTCCCSEEEEEET
T ss_pred CCCCCCHHHHHHhccCCCceEEEEEeC
Confidence 578999999985
|
| >1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4 cluster; HET: SAM; 2.07A {Escherichia coli} SCOP: c.1.28.2 | Back alignment and structure |
|---|
Probab=99.77 E-value=2.4e-18 Score=196.93 Aligned_cols=199 Identities=11% Similarity=0.155 Sum_probs=159.9
Q ss_pred CCCCCCCCCCCCCcCCCCcccccCCCHHHHHHHHHHHHHC----CCCEEEEeeccCCCCcccHHHHHHHHHHHHh-----
Q psy8199 691 GCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSD----GATRFCMGAAWRELKDRDLDNIENMICEVKK----- 761 (965)
Q Consensus 691 ~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~----g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~----- 761 (965)
.|+.+|.||.+....... ...+....+.+.++++...+. ++..++|++|. | ...+.+.+.++++.+++
T Consensus 61 fC~~~C~yC~~~~~~~~~-~~~~~~~~~~l~~Ei~~~~~~~~~~~i~~i~fgGGt-p-t~l~~~~l~~ll~~i~~~~~~~ 137 (457)
T 1olt_A 61 FCHKLCYFCGCNKIVTRQ-QHKADQYLDALEQEIVHRAPLFAGRHVSQLHWGGGT-P-TYLNKAQISRLMKLLRENFQFN 137 (457)
T ss_dssp EESSCCTTCCSSCEECSC-THHHHHHHHHHHHHHHHHGGGGTTCCEEEEEEEESC-G-GGSCHHHHHHHHHHHHHHSCEE
T ss_pred CCCCCCCCCCCceeccCC-cchHHHHHHHHHHHHHHHHHhcCCCceEEEEEeCCC-c-ccCCHHHHHHHHHHHHHhCCCC
Confidence 599999999987642211 111113467888888776554 46778887764 3 22346777778877775
Q ss_pred --cCcEeEEecCCCCHHHHHHHHHhCCCeEeccCCC-CHHHHhcccCCCCHHHHHHHHHHHHHcCCc-eeeeEEEec-CC
Q psy8199 762 --IGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGIN-ICCGGIIGL-SE 836 (965)
Q Consensus 762 --~~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~~es-~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~-v~~~~i~Gl-~e 836 (965)
..+.+.++++.++++.++.|+++|++++++|+|| ++++++.+++.+++++.+++++.++++|+. +++++|+|+ ||
T Consensus 138 ~~~eitie~~p~~l~~e~l~~L~~~G~~rislGvQS~~~~~l~~i~R~~~~~~~~~ai~~~r~~G~~~v~~dlI~GlPge 217 (457)
T 1olt_A 138 ADAEISIEVDPREIELDVLDHLRAEGFNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHAREIGFTSTNIDLIYGLPKQ 217 (457)
T ss_dssp EEEEEEEEECSSSCCTHHHHHHHHTTCCEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTTCCSCEEEEEESCTTC
T ss_pred CCcEEEEEEccCcCCHHHHHHHHHcCCCEEEEeeccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCcEEEEEEcCCCCC
Confidence 2345677889999999999999999999999999 999999999999999999999999999997 999999999 79
Q ss_pred CHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCC-----CCCCCHHHHHHHHHHHHHHCC
Q psy8199 837 SRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYG-----SSILDPLEFIRTIAVARITMP 894 (965)
Q Consensus 837 t~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~-----~~~~~~~~~~~~ia~~R~~lp 894 (965)
|.+++.++++.+.+++ ++.+.++.|.|.|+|+... ...++.++..+++..+...+.
T Consensus 218 t~e~~~~tl~~~~~l~--~~~i~~y~l~~~p~t~~~~~~~~~~~lp~~~~~~~~~~~~~~~L~ 278 (457)
T 1olt_A 218 TPESFAFTLKRVAELN--PDRLSVFNYAHLPTIFAAQRKIKDADLPSPQQKLDILQETIAFLT 278 (457)
T ss_dssp CHHHHHHHHHHHHHHC--CSEEEEEECCCCTTTSGGGGGSCGGGSCCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcC--cCEEEeecCcCCcCchhHhhccccCCCcCHHHHHHHHHHHHHHHH
Confidence 9999999999999999 9999999999999998653 234577777777776665553
|
| >2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=8.1e-18 Score=188.91 Aligned_cols=321 Identities=12% Similarity=0.019 Sum_probs=191.0
Q ss_pred ecCCc-ccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCC-CCeEEEcCChhHHH
Q psy8199 250 TFSGK-RYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYK-LGHCFYGSDGASAV 327 (965)
Q Consensus 250 d~dG~-~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~-~~~v~~~~sGseA~ 327 (965)
...|+ .++|+..+.+.. -.+|++.+|+. .. ..++....++++.+++.++.. .+++++++||++|+
T Consensus 23 ~~~g~~~v~~~~~~~~~~---~~~~~v~~a~~----~~------~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~ggt~a~ 89 (374)
T 2aeu_A 23 NEKGRDALYDLSGLSGGF---LIDEKDKALLN----TY------IGSSYFAEKVNEYGLKHLGGDENDKCVGFNRTSSAI 89 (374)
T ss_dssp HHTCGGGCEECSSCCCCC---CCCHHHHHHHT----ST------THHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHH
T ss_pred hccCccceeeecccCCCC---CCCHHHHHHHH----Hh------cCchHHHHHHHHHHHHHhCCCCcceEEEEcChHHHH
Confidence 35576 677876542111 14677877775 11 112334467777777777532 37899999999999
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccc--cccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHH
Q psy8199 328 EVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLG--ALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIAR 405 (965)
Q Consensus 328 ~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (965)
..+++.+ ++++|++.+++||+.... .....| ..+..+ .
T Consensus 90 ~~~~~~~----------~gd~Vl~~~~~y~~~~~~~~~~~~~g------------~~~~~v-~----------------- 129 (374)
T 2aeu_A 90 LATILAL----------KPKKVIHYLPELPGHPSIERSCKIVN------------AKYFES-D----------------- 129 (374)
T ss_dssp HHHHHHH----------CCSEEEEECSSSSCCTHHHHHHHHTT------------CEEEEE-S-----------------
T ss_pred HHHHHhC----------CCCEEEEecCCCCccHHHHHHHHHcC------------cEEEEe-C-----------------
Confidence 9999865 357899999999985321 111111 112222 1
Q ss_pred HHHHHHHHHHHhCCCcEEE-EEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCc
Q psy8199 406 CAIFDLEILLKKNHNKIAA-IIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWP 484 (965)
Q Consensus 406 ~d~~~le~~l~~~~~~~aa-ii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~p 484 (965)
|+++|+++ . +++++ |++++ ++|++|. +...+++|.++|++||+++|+||+|..+ ..|...........+
T Consensus 130 -d~~~l~~~-~---~~~~~~v~~~~-p~nptG~---~~~~l~~i~~l~~~~~~~li~De~~~~~-~~~~~~~~~~~~~~~ 199 (374)
T 2aeu_A 130 -KVGEILNK-I---DKDTLVIITGS-TMDLKVI---ELENFKKVINTAKNKEAIVFVDDASGAR-VRLLFNQPPALKLGA 199 (374)
T ss_dssp -CHHHHHTT-C---CTTEEEEEECB-CTTSCBC---CHHHHHHHHHHHHHHTCCEEEECTTHHH-HHHHTTCCCHHHHTC
T ss_pred -CHHHHHhc-C---CCccEEEEEcc-CCCCCCC---CcccHHHHHHHHHHcCCEEEEECCcccc-cccccccCCccccCC
Confidence 45677765 2 35677 88888 7888884 4456999999999999999999987533 111111000112346
Q ss_pred cee--eeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHH-
Q psy8199 485 DFL--CLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKI- 561 (965)
Q Consensus 485 Div--t~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l- 561 (965)
|++ ++||.++| +++|++++++++++.+.. .....+.+.++++++++.++|+.+.. +..++..++.+.+
T Consensus 200 di~~~S~sK~l~g--~~~G~~~~~~~~~~~l~~------~~~~~~~~~~~~~~~a~~~al~~~~~-~~~~~~~~~~~~~~ 270 (374)
T 2aeu_A 200 DLVVTSTDKLMEG--PRGGLLAGKKELVDKIYI------EGTKFGLEAQPPLLAGIYRALKNFNL-ERIRKAFERAKNFD 270 (374)
T ss_dssp SEEEEETTSSSSS--CSCEEEEEEHHHHHHHHH------HHHTTTCBCCHHHHHHHHHHHHHCCH-HHHHHHHHHHHHCC
T ss_pred cEEEecCcccccC--cceEEEEECHHHHHHHHH------hhccccCCCCHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHH
Confidence 877 48999875 699999999999887764 11112235689999999999987532 1233333344333
Q ss_pred ---HHHHH----cccCCCcee-eeeceeEEEEEEEeecCccchhhHHHHHH-HHHHHcCcEEeecC------CEEEEeCC
Q psy8199 562 ---TKALT----SLITHPKII-NFRQKGMIWAFDVIIEDPEQIETFSKKFF-VAALKNELLLRPIG------NTVYLMPP 626 (965)
Q Consensus 562 ---~~~L~----~l~~~~~i~-~v~g~G~~~~i~~~~~~~~~~~~~~~~~~-~~l~~~Gi~~~~~~------~~lR~~p~ 626 (965)
++.|. .+.+.+++. ..++.|.++..... ...........+. +.+.++||++.|+. +++||+++
T Consensus 271 ~~~~~~l~~~L~~~~~~~g~~~~~~~~g~~~~~~~~--~~~~~~~~~~~~~~~ll~~~gV~v~~g~~~~~~~~~lRi~~~ 348 (374)
T 2aeu_A 271 LSKIEKLNKELKAIDDNINIVYERTPTGFVIKRVYK--DDTINIKKLIEIGFNLLKNYGIITITVAGMPGASKSLRIDLT 348 (374)
T ss_dssp CHHHHHHHHHHTTTCTTEEEEEEECSSEEEEEEEES--SHHHHHHHHHHHHHHHHHHHCEECSTTSSSCSSCCSEEEETT
T ss_pred HHHHHHHHHhhhhhhhccCcceeeCCceEEEEeecc--cccccccchHHHHHHHHHhCCEEEecCCCCCCCCCeEEEEcC
Confidence 34443 321113443 34667776655321 1000000111244 44557899998742 47999965
Q ss_pred c-ccCHHHHHHHHHhhhcc
Q psy8199 627 Y-ILNKNEIQHMTSAIFQT 644 (965)
Q Consensus 627 ~-~~t~~~i~~~~~~l~~~ 644 (965)
. ...+.+++++.+.+.++
T Consensus 349 ~~~~~~~~l~~l~~~l~~~ 367 (374)
T 2aeu_A 349 SRDAERIDDNYIIKAIVES 367 (374)
T ss_dssp SGGGGGSCHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHH
Confidence 3 22233366666555443
|
| >3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.76 E-value=1.2e-17 Score=188.59 Aligned_cols=340 Identities=12% Similarity=0.024 Sum_probs=209.0
Q ss_pred cccccccccchhccCCC--CCHHHHHHHHHHH-hh--ccccccCCCCcHHHHHHHHHHHhhcCC--CCC--eEEEcCChh
Q psy8199 254 KRYLDAISSWWVNLFGH--SNSYINKALKNQL-NK--LEHVMLSNLTHKPVIKLSEKLSSLTQY--KLG--HCFYGSDGA 324 (965)
Q Consensus 254 ~~ylD~~~~~~~~~lGh--~~p~v~~av~~~~-~~--~~~~~~~~~~~~~~~~la~~l~~~~~~--~~~--~v~~~~sGs 324 (965)
...||+..|....+-|. ..+.|.+|.. .+ +. ...|....+..+.++.+++.+.+.... ..+ .++.|+||+
T Consensus 29 ~~~I~l~~G~~~d~~~~~~~~~~v~~a~~-~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~i~i~~t~G~~ 107 (405)
T 3k7y_A 29 EEKINLSIGVCCNDDGDLHIFDSVLNADK-LVTENYKEKPYLLGNGTEDFSTLTQNLIFGNNSKYIEDKKICTIQCIGGT 107 (405)
T ss_dssp SSCEECSCSSCBCTTSSBCCCHHHHHHHH-HHHHHCCCCCCCTTSSCHHHHHHHHHHHHCSSCTTTTTTCEEEEEEEHHH
T ss_pred cCcEEeeeeeeECCCCCCcccHHHHHHHH-HhcCCCCCCCCCCCCCcHHHHHHHHHHHcCCCCccccccceEEEEcCchH
Confidence 45788877753333332 3677888766 43 22 223444556677788888887654432 234 368999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCC-CCCCCCCCCChhHH
Q psy8199 325 SAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTP-DSRNINKGNSANEI 403 (965)
Q Consensus 325 eA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 403 (965)
+|+..++++...+ .+ +.|++.+++|.++.......+. .++.+|.. ...+.
T Consensus 108 ~al~~~~~~l~~~------~~-d~Vlv~~P~y~~~~~~~~~~g~-------------~~~~v~~~~~~~~~--------- 158 (405)
T 3k7y_A 108 GAIFVLLEFLKML------NV-ETLYVTNPPYINHVNMIESRGF-------------NLKYINFFDYNLID--------- 158 (405)
T ss_dssp HHHHHHHHHHHTT------TC-CEEEEESSCCHHHHHHHHTTTC-------------EEEEECCEETTTTE---------
T ss_pred HHHHHHHHHHHhc------CC-CEEEEeCCCCHhHHHHHHHcCC-------------eEEEEeccccccCC---------
Confidence 9999999877543 25 9999999999988544333332 23333331 11111
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccc---cccccc-
Q psy8199 404 ARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK---FFACEH- 479 (965)
Q Consensus 404 ~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~---~~~~~~- 479 (965)
.|+++|++.+.+.+ +..+|++.|-.+|++|.+. +.+.+++|.++|++||+++|+||+|.+|...+. ......
T Consensus 159 --~d~~~l~~~l~~~~-~~~~i~l~~~~~NPTG~~~-s~~~~~~l~~~~~~~~~~vi~De~Y~~l~~~~~~~~~~~~~~~ 234 (405)
T 3k7y_A 159 --INYDLFLNDLRNIP-NGSSVILQISCYNPCSVNI-EEKYFDEIIEIVLHKKHVIIFDIAYQGFGHTNLEEDVLLIRKF 234 (405)
T ss_dssp --ECHHHHHHHHHHSC-SSCEEEECCSSCTTTCCCC-CHHHHHHHHHHHHHHCCEEEEEESCTTTSSSSTTGGGHHHHHH
T ss_pred --cCHHHHHHHHHhCC-CCeEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHHCCeEEEEecCcccccCCCcccchHHHHHH
Confidence 26788998887533 3445666540479999765 788899999999999999999999998854321 111111
Q ss_pred cCCCccee---eeccccC-CCcccceeeee---cHHHHHhhhccCCcccccccCCC-CCCHHHHHHHHHHHHHH--hc--
Q psy8199 480 AEIWPDFL---CLSKGIT-GGYLPLSLVMT---TDKIYNSIYYKNNINIFLHSHSY-SGNPLACCAALATLEIF--NK-- 547 (965)
Q Consensus 480 ~~~~pDiv---t~sK~l~-gG~~pig~v~~---~~~i~~~~~~~~~~~~~~~~~t~-~~~~~~~aaa~a~L~~~--~~-- 547 (965)
....+.++ +|||.++ .| |++|++++ ++++++.+... .. ..+..++ +.+.++++++.++|+.- .+
T Consensus 235 ~~~~~~~i~~~S~SK~~~l~G-lRiG~~~~~~~~~~~~~~~~~~--l~-~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~ 310 (405)
T 3k7y_A 235 EEKNIAFSVCQSFSKNMSLYG-ERAGALHIVCKNQEEKKIVFNN--LC-FIVRKFYSSPVIHTNRILCQLLNNQNLKLNW 310 (405)
T ss_dssp HTTTCCEEEEEECTTTSCCTT-TTEEEEEEECSSHHHHHHHHHH--HH-HHHHTTTSSCCHHHHHHHHHHHHCHHHHHHH
T ss_pred HhcCCcEEEEeeCCccCCCcc-ccceEEEEEeCCHHHHHHHHHH--HH-HHHhcccCCCcHHHHHHHHHHhCCHHHHHHH
Confidence 12234444 6899876 45 89999753 56665544320 00 0112233 34567887777777521 00
Q ss_pred ----ccHHHHHHHHHHHHHHHHH----cccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecCC
Q psy8199 548 ----DNILQRISQDMKKITKALT----SLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIGN 619 (965)
Q Consensus 548 ----~~~~~~~~~~~~~l~~~L~----~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~ 619 (965)
....++++++++.+.+.|+ ++.--..+..+.++|.|+.+.-. + . .+.+.|.++||++.|++
T Consensus 311 ~~~l~~~~~~~~~~R~~l~~~L~~~~~~~g~~~~~~~~~p~gg~f~~~~l--~----~----~~~~~L~~~gV~v~p~~- 379 (405)
T 3k7y_A 311 IKELSQLSQRITNNRILFFNKLETYQKKYNLNYDWNVYKKQRGLFSFVPL--L----A----KIAEHLKTHHIYIINNG- 379 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCGGGGSSCCSSEEECGG--G----G----GGTTTTTTTTEECCTTS-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCccccCCceEEEecCC--C----H----HHHHHHHHCCEeecCCC-
Confidence 1234556777778888887 55111123445667776554211 1 1 12244578899999965
Q ss_pred EEEEeCCcccCHHHHHHHHHhhhccc
Q psy8199 620 TVYLMPPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 620 ~lR~~p~~~~t~~~i~~~~~~l~~~~ 645 (965)
||+.+ ..++++++.+++++.+++
T Consensus 380 --Ris~a-~~~~~~i~~~~~~i~~~~ 402 (405)
T 3k7y_A 380 --RINVS-GITKNNVDYIADKICLSL 402 (405)
T ss_dssp --EEEGG-GCCTTHHHHHHHHHHHHH
T ss_pred --eEEEe-ccCHHHHHHHHHHHHHHH
Confidence 88832 357788999998887654
|
| >1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=5e-17 Score=184.13 Aligned_cols=316 Identities=11% Similarity=0.106 Sum_probs=201.1
Q ss_pred CHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEE
Q psy8199 272 NSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFIC 351 (965)
Q Consensus 272 ~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~ 351 (965)
+|++.+++.++++.. ++. ...+...++.+.++++++ .+++++++||++|++.+++.+.. .++++|++
T Consensus 11 ~~~v~~a~~~~~~~~-~~~---~~g~~~~~l~~~la~~~~--~~~v~~~~ggt~al~~~~~~l~~-------~~gd~Vl~ 77 (394)
T 1o69_A 11 GGNELKYIEEVFKSN-YIA---PLGEFVNRFEQSVKDYSK--SENALALNSATAALHLALRVAGV-------KQDDIVLA 77 (394)
T ss_dssp -CCHHHHHHHHHHHT-TTS---CTTHHHHHHHHHHHHHHC--CSEEEEESCHHHHHHHHHHHTTC-------CTTCEEEE
T ss_pred CHHHHHHHHHHHHcC-Ccc---CCChHHHHHHHHHHHHhC--CCcEEEeCCHHHHHHHHHHHcCC-------CCCCEEEE
Confidence 467888888887652 211 112567889999999985 48999999999999999987621 35678999
Q ss_pred EcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEcccc
Q psy8199 352 LQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLV 431 (965)
Q Consensus 352 ~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v 431 (965)
.+++|+++.......+. .+.+++.... +. .|+++|++++++.++++++|++++
T Consensus 78 ~~~~~~~~~~~~~~~g~-------------~~~~v~~~~~-~~-----------~d~~~l~~~i~~~~~~~~~v~~~~-- 130 (394)
T 1o69_A 78 SSFTFIASVAPICYLKA-------------KPVFIDCDET-YN-----------IDVDLLKLAIKECEKKPKALILTH-- 130 (394)
T ss_dssp ESSSCGGGTHHHHHTTC-------------EEEEECBCTT-SS-----------BCHHHHHHHHHHCSSCCCEEEEEC--
T ss_pred CCCccHHHHHHHHHcCC-------------EEEEEEeCCC-CC-----------cCHHHHHHHHhcccCCceEEEEEC--
Confidence 99999998544333221 2334443211 11 267889988875322466777765
Q ss_pred ccCCCcccCChHHHHHHHHHHHhcCCeEEEecccc-CCCcccccccccccCCCcceeee--ccccCCCcccceeeeec-H
Q psy8199 432 QCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAV-GCGRTGKFFACEHAEIWPDFLCL--SKGITGGYLPLSLVMTT-D 507 (965)
Q Consensus 432 ~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-g~gr~G~~~~~~~~~~~pDivt~--sK~l~gG~~pig~v~~~-~ 507 (965)
++|...+ +++|.++|++||+++|+||+|+ |+...|.... .++ .+|+.+| +|++++ ..+|+++++ +
T Consensus 131 --~~G~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~--~~~-~~~~~s~s~~K~l~~--~~~G~~~~~~~ 199 (394)
T 1o69_A 131 --LYGNAAK----MDEIVEICKENDIVLIEDAAEALGSFYKNKALG--TFG-EFGVYSYNGNKIITT--SGGGMLIGKNK 199 (394)
T ss_dssp --GGGCCCC----HHHHHHHHHHTTCEEEEECTTCTTCEETTEETT--SSS-SEEEEECCTTSSSCC--SSCEEEEESCH
T ss_pred --CCCChhh----HHHHHHHHHHcCCEEEEECcCcccceeCCcccc--ccc-CcEEEEEeCCccCCC--CCceEEEECCH
Confidence 3565544 9999999999999999999998 6544443211 111 3688888 577765 479999995 7
Q ss_pred HHHHhhhccCCcc-----cc---cccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcccCCCceeeeec
Q psy8199 508 KIYNSIYYKNNIN-----IF---LHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQ 579 (965)
Q Consensus 508 ~i~~~~~~~~~~~-----~~---~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g 579 (965)
++++.+....... .+ ..+..+..+++.++++++.++.+++ ..++.+++.+++.+.|+++ .........
T Consensus 200 ~l~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l~~l~~--~~~~~~~~~~~l~~~L~~~--~~~~~~~~~ 275 (394)
T 1o69_A 200 EKIEKARFYSTQARENCLHYEHLDYGYNYRLSNVLGAIGVAQMEVLEQ--RVLKKREIYEWYKEFLGEY--FSFLDELEN 275 (394)
T ss_dssp HHHHHHHHHTBTCCCSSSSCCCSSCCCBCBCCHHHHHHHHHHHTTHHH--HHHHHHHHHHHHHHHHTTT--EECCCCCTT
T ss_pred HHHHHHHHHHHhccccCccccccccCcccCcCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhccc--ccccCCCCC
Confidence 8877665310000 00 1122233577888887777765543 6788888999999988764 111111111
Q ss_pred -eeE--EEEEEEeecCcc-----------------chhhHHHHHHHHHHHcCcEEeecC---------------------
Q psy8199 580 -KGM--IWAFDVIIEDPE-----------------QIETFSKKFFVAALKNELLLRPIG--------------------- 618 (965)
Q Consensus 580 -~G~--~~~i~~~~~~~~-----------------~~~~~~~~~~~~l~~~Gi~~~~~~--------------------- 618 (965)
.+. ++.+.+. +.. ........+.+.|.++||.++++.
T Consensus 276 ~~~~~~~~~i~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~p~~~~~~~~~~~~~~ 353 (394)
T 1o69_A 276 SRSNRWLSTALIN--FDKNELNACQKDINISQKNITLHPKISKLIEDLKNKQIETRPLWKAMHTQEVFKGAKAYLNGNSE 353 (394)
T ss_dssp EECCCSSEEEEES--CCGGGSCCCCEEEECCCCCCCCCHHHHHHHHHHHHTTCCCBCCCCCGGGCGGGTTCEEEECSHHH
T ss_pred CcceeEEEEEEec--chhhccccccccccccccccccccCHHHHHHHHHHcCCcccccCCccccchhhhccCCCCChHHH
Confidence 122 3444443 100 000124568888999999887641
Q ss_pred ----CEEEEeCCcccCHHHHHHHHHhhhcc
Q psy8199 619 ----NTVYLMPPYILNKNEIQHMTSAIFQT 644 (965)
Q Consensus 619 ----~~lR~~p~~~~t~~~i~~~~~~l~~~ 644 (965)
..+++.....+++++++.+++++.+.
T Consensus 354 ~~~~~~~~~~~~~~~t~edi~~~~~~l~~~ 383 (394)
T 1o69_A 354 LFFQKGICLPSGTAMSKDDVYEISKLILKS 383 (394)
T ss_dssp HHHHHEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred HHhcCeEEccCCCCCCHHHHHHHHHHHHHH
Confidence 23444445668999999999888654
|
| >3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.4e-17 Score=184.51 Aligned_cols=312 Identities=9% Similarity=0.012 Sum_probs=200.0
Q ss_pred CCHHHHHHHHHHHhhcc--ccccCCCCcHHHHHHHHHHHhhcCC-CCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCce
Q psy8199 271 SNSYINKALKNQLNKLE--HVMLSNLTHKPVIKLSEKLSSLTQY-KLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKK 347 (965)
Q Consensus 271 ~~p~v~~av~~~~~~~~--~~~~~~~~~~~~~~la~~l~~~~~~-~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~ 347 (965)
.+|++.+++.+++.+.. ..+......+...++.+++++.++. ..+++++++||++|+..+++... +.
T Consensus 15 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~al~~~~~~l~---------~~- 84 (362)
T 3ffr_A 15 LYPTVRQHMITALDEKIGVISHRSKKFEEVYKTASDNLKTLLELPSNYEVLFLASATEIWERIIQNCV---------EK- 84 (362)
T ss_dssp CCTTHHHHHHHHHHTTTTTSCTTSHHHHHHHHHHHHHHHHHTTCCTTEEEEEESCHHHHHHHHHHHHC---------SS-
T ss_pred CCHHHHHHHHHHhcCCccCcCCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCchHHHHHHHHhcc---------CC-
Confidence 47889999888876532 1111111124567888889998864 34689999999999999998763 23
Q ss_pred EEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEE
Q psy8199 348 KFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIII 427 (965)
Q Consensus 348 ~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ 427 (965)
++++....+++....... ......+..++.+.... .|+++|+ + .+++.+|++
T Consensus 85 ~~i~~~~~~~~~~~~~~~-----------~~~g~~~~~v~~~~~~~------------~d~~~l~--~---~~~~~~v~~ 136 (362)
T 3ffr_A 85 KSFHCVNGSFSKRFYEFA-----------GELGREAYKEEAAFGKG------------FYPADIT--V---PADAEIICL 136 (362)
T ss_dssp EEEEEECSHHHHHHHHHH-----------HHTTCEEEEEECCTTCC------------CCGGGCC--C---CTTCCEEEE
T ss_pred cEEEEcCcHHHHHHHHHH-----------HHhCCCeEEEecCCCCC------------CCHHHHh--c---cCCccEEEE
Confidence 666655555552111000 00111234444432111 1455555 2 345677777
Q ss_pred ccccccCCCcccCChHHHHHHHHHHHhc-CCeEEEeccccCCCcccccccccccCCCcceee--eccccCCCcccceeee
Q psy8199 428 EPLVQCAGGMIMYDSIYLKLVREICNNY-NIHLIADEIAVGCGRTGKFFACEHAEIWPDFLC--LSKGITGGYLPLSLVM 504 (965)
Q Consensus 428 ep~v~~~~G~~~~~~~~l~~l~~l~~~~-g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt--~sK~l~gG~~pig~v~ 504 (965)
++ ++|++|.+.+ +++|.++|++| |+++|+||+|+ +|.. .... .. .|+++ ++|.++++ ..+|+++
T Consensus 137 ~~-~~nptG~~~~----l~~i~~la~~~p~~~li~D~a~~-~~~~--~~~~--~~--~d~~~~s~~K~~~~~-~G~g~~~ 203 (362)
T 3ffr_A 137 TH-NETSSGVSMP----VEDINTFRDKNKDALIFVDAVSS-LPYP--KFDW--TK--IDSVFFSVQKCFGLP-AGLGVWI 203 (362)
T ss_dssp ES-EETTTTEECC----HHHHTTSGGGSTTSEEEEECTTT-TTSS--CCCT--TS--CSEEEEETTSTTCCC-SCCEEEE
T ss_pred Ec-CCCCcceeCC----HHHHHHHHHhCCCCEEEEecccc-cCCc--ccCh--hH--CcEEEEecccccCCC-CceEEEE
Confidence 77 7999999887 99999999999 99999999986 3211 1111 11 67775 56999854 3568888
Q ss_pred ecHHHHHhhhcc---CCccccc-----------ccC-CCCCCHHHHHHHHHHHHHHhc---ccHHHHHHHHHHHHHHHHH
Q psy8199 505 TTDKIYNSIYYK---NNINIFL-----------HSH-SYSGNPLACCAALATLEIFNK---DNILQRISQDMKKITKALT 566 (965)
Q Consensus 505 ~~~~i~~~~~~~---~~~~~~~-----------~~~-t~~~~~~~~aaa~a~L~~~~~---~~~~~~~~~~~~~l~~~L~ 566 (965)
+++++++.+... +....+. .+. .++.+..+++++.++++.+.+ +...++.+++.+++.+.|+
T Consensus 204 ~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~ 283 (362)
T 3ffr_A 204 LNDRVIEKSKALLAKRKSIGTYHTIPSMLEKARVNQTPETPNAMNIFLLGKVTGDMLQISADGIRKQTEEKAALINTYIE 283 (362)
T ss_dssp EEHHHHHHHHHHHHTTCCCCSTTSHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred ECHHHHHHhhhccccCCCCcccccHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHH
Confidence 898887766531 0000000 011 345677788888888886654 3456677777788888776
Q ss_pred cccCCCceeeee-----ceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec-----CCEEEEeCCcccCHHHHHH
Q psy8199 567 SLITHPKIINFR-----QKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-----GNTVYLMPPYILNKNEIQH 636 (965)
Q Consensus 567 ~l~~~~~i~~v~-----g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-----~~~lR~~p~~~~t~~~i~~ 636 (965)
++ |++..+. ..+.++.+.+. + ....+.+.|.++||.+.++ ++++|+++....+++++++
T Consensus 284 ~~---~g~~~~~~~~~~~~~~~~~~~~~--~------~~~~~~~~l~~~gi~~~~g~~~~~~~~iRis~~~~~~~e~i~~ 352 (362)
T 3ffr_A 284 SS---KVFSFGVEDAKLRSMTTIVANTT--M------LPGEINKILEPFDMAVGAGYGSKKETQIRIANFPAHSLEQVHK 352 (362)
T ss_dssp HC---SSEEESSSCGGGBCSSEEEEEES--S------CHHHHHHHHGGGTEEEEECSGGGTTTEEEEECCTTSCHHHHHH
T ss_pred Hc---cCceeccCChhhcCCceEEEecC--C------CHHHHHHHHHHCCeEEecCccccCCCEEEEECCCCCCHHHHHH
Confidence 54 4444322 12455666654 1 2456888899999999863 3789999998899999999
Q ss_pred HHHhhhcc
Q psy8199 637 MTSAIFQT 644 (965)
Q Consensus 637 ~~~~l~~~ 644 (965)
+++++.+.
T Consensus 353 l~~~l~~~ 360 (362)
T 3ffr_A 353 LVQTLKEK 360 (362)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99887653
|
| >3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=2e-16 Score=178.96 Aligned_cols=324 Identities=13% Similarity=0.094 Sum_probs=205.1
Q ss_pred cchhccCCCC--CHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHH
Q psy8199 262 SWWVNLFGHS--NSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWY 339 (965)
Q Consensus 262 ~~~~~~lGh~--~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~ 339 (965)
|++..++|.. +|++.+|+.++++... .+..+...++.+.++++++ .+++++++||++|++.|++.++. +.
T Consensus 2 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~l~~~la~~~~--~~~~i~~~sGt~a~~~al~~~~~-~~ 73 (390)
T 3b8x_A 2 HMINYPLASSTWDDLEYKAIQSVLDSKM-----FTMGEYVKQYETQFAKTFG--SKYAVMVSSGSTANLLMIAALFF-TK 73 (390)
T ss_dssp ---CBCSCCCCCCHHHHHHHHHHHHHTC-----CSSCHHHHHHHHHHHHHHT--CSEEEEESCHHHHHHHHHHHTTS-SS
T ss_pred CceeccCCCCCCCHHHHHHHHHHHHcCC-----CCCChHHHHHHHHHHHHHC--CCcEEEECCHHHHHHHHHHHHHh-hh
Confidence 3455556654 7999999999887632 2346788899999999995 45899999999999999987631 10
Q ss_pred hcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCC
Q psy8199 340 NKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNH 419 (965)
Q Consensus 340 ~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~ 419 (965)
..+..++++|++..++||+........+. .+.+++.....+. .|+++|++++.
T Consensus 74 ~~~~~~g~~Vi~~~~~~~~~~~~~~~~g~-------------~~~~~~~~~~~~~-----------~d~~~l~~~i~--- 126 (390)
T 3b8x_A 74 KPRLKKGDEIIVPAVSWSTTYYPLQQYGL-------------RVKFVDIDINTLN-----------IDIESLKEAVT--- 126 (390)
T ss_dssp SCSCCTTCEEEEESSSCHHHHHHHHHTTC-------------EEEEECBCTTTCS-----------BCHHHHHHHCC---
T ss_pred hcCCCCcCEEEECCCCcHHHHHHHHHcCC-------------EEEEEecCccccC-----------cCHHHHHHHhC---
Confidence 11123568899999999987543332211 2334443211111 26788888875
Q ss_pred CcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcceeeeccccCCCc--
Q psy8199 420 NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGY-- 497 (965)
Q Consensus 420 ~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~sK~l~gG~-- 497 (965)
+++++|++.+ +.|...+ +++|.++|++||+++|+||+|+ +|.. +....+|..+|+.+|||..+.++
T Consensus 127 ~~~~~v~~~~----~~g~~~~----~~~i~~l~~~~~~~li~D~a~~-~g~~---~~~~~~g~~~~~~~~s~~~~k~~~~ 194 (390)
T 3b8x_A 127 DSTKAILTVN----LLGNPNN----FDEINKIIGGRDIILLEDNCES-MGAT---FNNKCAGTFGLMGTFSSFYSNHIAT 194 (390)
T ss_dssp TTEEEEEEEC----GGGCCCC----HHHHHHHHTTSCCEEEEECTTC-TTCE---ETTEETTSSSSEEEEECCTTSSSCS
T ss_pred cCCeEEEEEC----CccChhh----HHHHHHHHHHcCCEEEEECcCc-ccCE---ECCcccccccceEEEEccCCCCCcc
Confidence 3566666632 2344444 9999999999999999999997 3221 12345677789999876433221
Q ss_pred ccceeeeecH-HHHHhhh---ccC--Cc-----------------ccc---cccCCCCCCHHHHHHHHHHHHHHhcccHH
Q psy8199 498 LPLSLVMTTD-KIYNSIY---YKN--NI-----------------NIF---LHSHSYSGNPLACCAALATLEIFNKDNIL 551 (965)
Q Consensus 498 ~pig~v~~~~-~i~~~~~---~~~--~~-----------------~~~---~~~~t~~~~~~~~aaa~a~L~~~~~~~~~ 551 (965)
-..|++++++ ++.+.+. ..+ .. ..+ ..+.++..+++.++++++.|+.++ +..
T Consensus 195 g~gG~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l~~l~--~~~ 272 (390)
T 3b8x_A 195 MEGGCIVTDDEEIYHILLCIRAHGWTRNLPKKNKVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAIGIEQLKKLP--RFI 272 (390)
T ss_dssp SSCEEEEESCHHHHHHHHHHTBTTBSTTSCSEETTTEECCSCTTTSSSCBCSCCCBCCCCHHHHHHHHHHHHHHH--HHH
T ss_pred CCceEEEeCCHHHHHHHHHHHhcCCCccccccccccccccccccccccceeccccccCcCHHHHHHHHHHHHHHH--HHH
Confidence 1236777775 5654332 211 00 000 013344578999999988887664 467
Q ss_pred HHHHHHHHHHHHHHHcccCCCceeeee--ceeEE--EEEEEeecCccchhhHHHHHHHHHHHcCcEEeec-------C--
Q psy8199 552 QRISQDMKKITKALTSLITHPKIINFR--QKGMI--WAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-------G-- 618 (965)
Q Consensus 552 ~~~~~~~~~l~~~L~~l~~~~~i~~v~--g~G~~--~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-------~-- 618 (965)
++.+++.+++.+.|+++ |++.... ..+.+ +.+.+. +.. ......+.+.|.++||.+++. .
T Consensus 273 ~~~~~~~~~l~~~L~~~---~~~~~~~~~~~~~~~~~~i~~~--~~~--~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~ 345 (390)
T 3b8x_A 273 SVRRKNAEYFLDKFKDH---PYLDVQQETGESSWFGFSFIIK--KDS--GVIRKQLVENLNSAGIECRPIVTGNFLKNTD 345 (390)
T ss_dssp HHHHHHHHHHHHHHTTC---SSEEECCCCSBCCCCEEEEEEC--TTS--CCCHHHHHHHHHHTTBCCBCSTTSSGGGCHH
T ss_pred HHHHHHHHHHHHHhcCC---CCcccCCCCCCcccEEEEEEec--CcC--cccHHHHHHHHHHCCCCeeeecCCchhhcch
Confidence 88888889998888764 3433211 12333 444442 100 011446778888999987641 0
Q ss_pred ---------------------CEEEEeCCcccCHHHHHHHHHhh
Q psy8199 619 ---------------------NTVYLMPPYILNKNEIQHMTSAI 641 (965)
Q Consensus 619 ---------------------~~lR~~p~~~~t~~~i~~~~~~l 641 (965)
+.+||+....+|+++++.+++.+
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~t~~di~~i~~~l 389 (390)
T 3b8x_A 346 VLKYFDYTVHNNVDNAEYLDKNGLFVGNHQIELFDEIDYLREVL 389 (390)
T ss_dssp HHTTCEEEESSCCHHHHHHHHHEEEEECCSSCCHHHHHHHHHHT
T ss_pred hhhcCCCCCcCCChHHHHHhcCEEEeeCCCCCCHHHHHHHHHhh
Confidence 25889988899999999988765
|
| >3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.75 E-value=2.1e-17 Score=188.92 Aligned_cols=328 Identities=12% Similarity=0.073 Sum_probs=192.9
Q ss_pred ccccccccchhccCCCCCHHHHHHHHHHHhhc-cc-cc--cCCCCcHH----HHHHHHHHHhhcCCCCCeEEEcCChhHH
Q psy8199 255 RYLDAISSWWVNLFGHSNSYINKALKNQLNKL-EH-VM--LSNLTHKP----VIKLSEKLSSLTQYKLGHCFYGSDGASA 326 (965)
Q Consensus 255 ~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~-~~-~~--~~~~~~~~----~~~la~~l~~~~~~~~~~v~~~~sGseA 326 (965)
..+++.++. .+.+|+|++|+.+++.+. .. +. ........ ...+.+.+++.++.+.+++ +++||++|
T Consensus 26 ~~i~l~~~~-----~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i-~~~sGt~a 99 (417)
T 3n0l_A 26 EGLEMIASE-----NFTLPEVMEVMGSILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLFNCKFANV-QPNSGSQA 99 (417)
T ss_dssp HSEECCTTC-----CCCCHHHHHHHTBGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEEC-CCSSHHHH
T ss_pred cCeeeeccc-----CCCCHHHHHHHhhhhhccccccCCCccccccchHHHHHHHHHHHHHHHHhCCCCcce-EeccHHHH
Confidence 456665442 124899999999888432 11 11 01111222 2344557888886544445 45667999
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccc--cccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHH
Q psy8199 327 VEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLG--ALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIA 404 (965)
Q Consensus 327 ~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (965)
++.+++.+. .++++|++.+++|++.... .....+ .......++... .+.
T Consensus 100 ~~~~~~~~~--------~~gd~vl~~~~~~~~~~~~~~~~~~~g----------~~~~~~~~~~~~-~~~---------- 150 (417)
T 3n0l_A 100 NQGVYAALI--------NPGDKILGMDLSHGGHLTHGAKVSSSG----------KMYESCFYGVEL-DGR---------- 150 (417)
T ss_dssp HHHHHHHHS--------CTTCEEEEECC--------------------------CCSEEEEECCCT-TSS----------
T ss_pred HHHHHHHhc--------CCCCEEEecccccccccchhhhhhhhc----------ceeeeEeccCCC-CCC----------
Confidence 999999874 3568999999999875221 111111 001122222221 111
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEecccc-CCCcccccccccccCCC
Q psy8199 405 RCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAV-GCGRTGKFFACEHAEIW 483 (965)
Q Consensus 405 ~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-g~gr~G~~~~~~~~~~~ 483 (965)
.|+++|++++.+. ++++|++.+ .+ .|.+.+ +++|+++|++||+++|+||+|+ |+...|.... ... .
T Consensus 151 -~d~~~l~~~i~~~--~~~~v~~~~-~~--~G~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~--~~~-~ 217 (417)
T 3n0l_A 151 -IDYEKVREIAKKE--KPKLIVCGA-SA--YARVID----FAKFREIADEIGAYLFADIAHIAGLVVAGEHPS--PFP-Y 217 (417)
T ss_dssp -CCHHHHHHHHHHH--CCSEEEECC-SS--CCSCCC----HHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCC--CTT-T
T ss_pred -cCHHHHHHHHHhc--CCeEEEECC-cc--cCccCC----HHHHHHHHHHcCCEEEEECccchhhhhcccCCC--ccc-c
Confidence 3788999988732 345566544 23 477665 9999999999999999999974 2211121110 011 3
Q ss_pred cceeeec--cccCCCcccceeeeec-HHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc---ccHHHHHHHH
Q psy8199 484 PDFLCLS--KGITGGYLPLSLVMTT-DKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK---DNILQRISQD 557 (965)
Q Consensus 484 pDivt~s--K~l~gG~~pig~v~~~-~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~---~~~~~~~~~~ 557 (965)
.|++++| |+++| ++.|+++++ +++++.+... ..++.+.+.++..++++.+++....+ +...++++++
T Consensus 218 ~di~~~s~sK~l~g--~~~G~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~ 290 (417)
T 3n0l_A 218 AHVVSSTTHKTLRG--PRGGIIMTNDEELAKKINSA-----IFPGIQGGPLMHVIAAKAVGFKFNLSDEWKVYAKQVRTN 290 (417)
T ss_dssp CSEEEEESSTTTCS--CSCEEEEESCHHHHHHHHHH-----HTTTTCSSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHH
T ss_pred ceEEEeeCccccCC--CCeeEEEECCHHHHHHHhhh-----hCCcccCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 5888655 99965 468999998 7888777541 12333344567777777777765332 3466677777
Q ss_pred HHHHHHHHHcccCCCceeeee--ceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec-----------CCEEEEe
Q psy8199 558 MKKITKALTSLITHPKIINFR--QKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-----------GNTVYLM 624 (965)
Q Consensus 558 ~~~l~~~L~~l~~~~~i~~v~--g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-----------~~~lR~~ 624 (965)
.+++.+.|.+. ++..+. ..+.++.+.+. ..+ .....+.+.|.++||.+.+. .+.+|+.
T Consensus 291 ~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~ri~ 361 (417)
T 3n0l_A 291 AQVLANVLMDR----KFKLVSDGTDNHLVLMSFL-DRE----FSGKDADLALGNAGITANKNTVPGEIRSPFITSGLRLG 361 (417)
T ss_dssp HHHHHHHHHHT----TCEEGGGSCSSSEEEEECT-TSS----SCHHHHHHHHHHTTEECEECCCTTCCSCTTTCSEEEEE
T ss_pred HHHHHHHHHhC----CceeccCCCCceEEEEEcc-cCC----CCHHHHHHHHHHcCeEEeccccCCCCcccCCCCeeEec
Confidence 88888888763 333222 23446666553 111 11345667888999998742 1569998
Q ss_pred CCcc----cCHHHHHHHHHhhhcccc
Q psy8199 625 PPYI----LNKNEIQHMTSAIFQTFN 646 (965)
Q Consensus 625 p~~~----~t~~~i~~~~~~l~~~~~ 646 (965)
++.. +++++++++++++.+++.
T Consensus 362 ~~~~~~~~~~~~~i~~~~~~l~~~l~ 387 (417)
T 3n0l_A 362 TPALTARGFKEKEMEIVSNYIADILD 387 (417)
T ss_dssp CHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CHHHhhCCCCHHHHHHHHHHHHHHHh
Confidence 7644 568999999998876553
|
| >1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.74 E-value=8.3e-18 Score=193.18 Aligned_cols=284 Identities=13% Similarity=0.161 Sum_probs=180.9
Q ss_pred CCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCcc
Q psy8199 294 LTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFK 373 (965)
Q Consensus 294 ~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~ 373 (965)
+..+...+++++++++++ .+++++++||++|+..+++++ .++++|++.++.||++.......
T Consensus 130 ~g~~~~~~l~~~la~~~g--~~~~i~~~sGt~al~~~l~~~---------~~Gd~Vi~~~~~y~~~~~~~~~~------- 191 (464)
T 1ibj_A 130 SGNPTRDALESLLAKLDK--ADRAFCFTSGMAALSAVTHLI---------KNGEEIVAGDDVYGGSDRLLSQV------- 191 (464)
T ss_dssp TCCHHHHHHHHHHHHHHT--CSEEEEESSHHHHHHHHHTTS---------CTTCEEEEESSCCHHHHHHHHHT-------
T ss_pred CCCHHHHHHHHHHHHHhC--CCeEEEECCHHHHHHHHHHHh---------CCCCEEEEECCCchhHHHHHHHH-------
Confidence 345677888888998885 458899999999998887632 35688999999998863210000
Q ss_pred chhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHH
Q psy8199 374 EIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICN 453 (965)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~ 453 (965)
.......+.+++. .|+++|++++. +++++|++++ ++|++|.+.+ +++|.++|+
T Consensus 192 --~~~~G~~v~~v~~-----------------~d~~~l~~~i~---~~tk~v~l~~-p~NptG~v~~----l~~i~~la~ 244 (464)
T 1ibj_A 192 --VPRSGVVVKRVNT-----------------TKLDEVAAAIG---PQTKLVWLES-PTNPRQQISD----IRKISEMAH 244 (464)
T ss_dssp --SGGGTCEEEEECT-----------------TSHHHHHHHCC---SSEEEEEECS-SCTTTCCCCC----HHHHHHHHH
T ss_pred --HHHcCCEEEEeCC-----------------CCHHHHHHHhc---cCceEEEEeC-CCCCCCEeec----HHHHHHHHH
Confidence 0011123344443 26788888874 4688999999 8999999886 999999999
Q ss_pred hcCCeEEEeccccCCCcccccccccccCCCccee--eeccccCC--CcccceeeeecH-HHHHhhhccCCcccccccCCC
Q psy8199 454 NYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL--CLSKGITG--GYLPLSLVMTTD-KIYNSIYYKNNINIFLHSHSY 528 (965)
Q Consensus 454 ~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDiv--t~sK~l~g--G~~pig~v~~~~-~i~~~~~~~~~~~~~~~~~t~ 528 (965)
+||+++|+||+|.. |.... ..+ ..+|++ +++|.++| | +++|++++++ ++++.+.. +......
T Consensus 245 ~~gi~livDea~~~-g~~~~--~~~---~~~div~~S~sK~~~g~~G-l~~G~l~~~~~~l~~~l~~------~~~~~g~ 311 (464)
T 1ibj_A 245 AQGALVLVDNSIMS-PVLSR--PLE---LGADIVMHSATKFIAGHSD-VMAGVLAVKGEKLAKEVYF------LQNSEGS 311 (464)
T ss_dssp TTTCEEEEECTTTC-TTTCC--GGG---TTCSEEEEETTTTTTCSSC-CCCEEEEECSHHHHHHHHH------HHHHTTC
T ss_pred HcCCEEEEECCCcc-cccCC--hhh---cCCEEEEECCcccccCCCC-CcEEEEEEChHHHHHHHHH------HHHhcCC
Confidence 99999999999963 22111 122 346877 58999976 5 6889999984 78777654 1111233
Q ss_pred CCCHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHH-------HcccCCCcee----eeeceeEEEEEEEeecCccc
Q psy8199 529 SGNPLACCAALATLEIFNK--DNILQRISQDMKKITKAL-------TSLITHPKII----NFRQKGMIWAFDVIIEDPEQ 595 (965)
Q Consensus 529 ~~~~~~~aaa~a~L~~~~~--~~~~~~~~~~~~~l~~~L-------~~l~~~~~i~----~v~g~G~~~~i~~~~~~~~~ 595 (965)
+.+++++++++++|+.+.. +...+.+....+++.+.- ..+.++|++. ..++.|.++.+++. +
T Consensus 312 ~~~~~~~~a~~~al~~~~~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~g~g~~~~~~l~--~--- 386 (464)
T 1ibj_A 312 GLAPFDCWLCLRGIKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITG--S--- 386 (464)
T ss_dssp BCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTCCEEECTTSTTSTTHHHHTTTCSCCCSEEEEECS--C---
T ss_pred CCCHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHhCCCceEEECCCCCCCcchHHHhccCCCCceEEEEEEC--C---
Confidence 4578898888888754321 112223333333333210 1122334332 12345778888863 2
Q ss_pred hhhHHHHHHHHHHHcCcEEeec----------------------------CCEEEEeCCcccCHHHHHHHHHhhhccc
Q psy8199 596 IETFSKKFFVAALKNELLLRPI----------------------------GNTVYLMPPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 596 ~~~~~~~~~~~l~~~Gi~~~~~----------------------------~~~lR~~p~~~~t~~~i~~~~~~l~~~~ 645 (965)
......+.+.|...|+.+.++ .+.+|+++++ ++++++++++.+++
T Consensus 387 -~~~~~~~~~~L~~~gi~v~~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvg~----edi~~li~~L~~al 459 (464)
T 1ibj_A 387 -VALSKHLVETTKYFSIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAGI----EDVDDLISDLDIAF 459 (464)
T ss_dssp -HHHHHHHHHHCSSSEECSCCCSSSCEEECTTTTTTCSCCSSSSSSSSCCTTCEEEECCS----SCHHHHHHHHHHHH
T ss_pred -HHHHHHHHHhcCcceEeecCCCCceeeecccccccccCCHHHHHhcCCCcCeEEEEeCC----CCHHHHHHHHHHHH
Confidence 112334666666566655432 2589999876 67888888776543
|
| >3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B | Back alignment and structure |
|---|
Probab=99.74 E-value=4.9e-17 Score=184.15 Aligned_cols=286 Identities=14% Similarity=0.119 Sum_probs=187.0
Q ss_pred CCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcC
Q psy8199 292 SNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQS 371 (965)
Q Consensus 292 ~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~ 371 (965)
..+.++...+|+++++++++. +..++++||++|+..+++ +. .++++|++.++.||+........
T Consensus 62 ~r~~~p~~~~l~~~la~~~g~--~~~i~~~sG~~ai~~~~~-l~--------~~gd~Vl~~~~~y~~~~~~~~~~----- 125 (403)
T 3cog_A 62 SRSGNPTRNCLEKAVAALDGA--KYCLAFASGLAATVTITH-LL--------KAGDQIICMDDVYGGTNRYFRQV----- 125 (403)
T ss_dssp ----CHHHHHHHHHHHHHHTC--SEEEEESCHHHHHHHHHT-TS--------CTTCEEEEESSCCHHHHHHHHHT-----
T ss_pred cCCCCchHHHHHHHHHHHhCC--CcEEEECCHHHHHHHHHH-Hh--------CCCCEEEEeCCCcchHHHHHHHH-----
Confidence 346678889999999999863 366667788999999988 42 35688999999998842111000
Q ss_pred ccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHH
Q psy8199 372 FKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREI 451 (965)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l 451 (965)
.......+.+++. .|+++|+++++ +++++|++|+ ++|++|.+.+ +++|.++
T Consensus 126 ----~~~~G~~v~~v~~-----------------~d~~~l~~~i~---~~t~~v~~~~-p~nptG~~~~----l~~i~~l 176 (403)
T 3cog_A 126 ----ASEFGLKISFVDC-----------------SKIKLLEAAIT---PETKLVWIET-PTNPTQKVID----IEGCAHI 176 (403)
T ss_dssp ----GGGGTCEEEEECT-----------------TSHHHHHHHCC---TTEEEEEEES-SCTTTCCCCC----HHHHHHH
T ss_pred ----HHHcCCEEEEECC-----------------CCHHHHHHhcC---cCCeEEEEEC-CCCCCCeeeC----HHHHHHH
Confidence 0011123444443 26788888775 4678888998 8999999886 9999999
Q ss_pred HHhcC-CeEEEeccccCCCcccccccccccCCCccee--eeccccCC-Ccccceeeeec-HHHHHhhhccCCcccccccC
Q psy8199 452 CNNYN-IHLIADEIAVGCGRTGKFFACEHAEIWPDFL--CLSKGITG-GYLPLSLVMTT-DKIYNSIYYKNNINIFLHSH 526 (965)
Q Consensus 452 ~~~~g-~llI~DEv~tg~gr~G~~~~~~~~~~~pDiv--t~sK~l~g-G~~pig~v~~~-~~i~~~~~~~~~~~~~~~~~ 526 (965)
|++|| +++|+||+|+++. .+.. .+..+|++ +++|.++| |..++|+++++ +++++.+.. .....
T Consensus 177 a~~~g~~~livD~~~~~~~-~~~~-----~~~~~div~~S~sK~~~g~~~~~~G~v~~~~~~l~~~l~~------~~~~~ 244 (403)
T 3cog_A 177 VHKHGDIILVVDNTFMSPY-FQRP-----LALGADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRF------LQNSL 244 (403)
T ss_dssp HTSSSCCEEEEECTTTCTT-TCCT-----TTTTCSEEEEETTTTTTCSSCCCCEEEEECCHHHHHHHHH------HHHHH
T ss_pred HHHcCCCEEEEECCCcccc-cCCc-----cccCCeEEEEcChhhccCCCCCeEEEEEECcHHHHHHHHH------HHHhc
Confidence 99999 9999999998652 2211 23457887 68999986 32468999985 788777654 22334
Q ss_pred CCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcc-----------cCCCceee----eeceeEEEEEEEeec
Q psy8199 527 SYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSL-----------ITHPKIIN----FRQKGMIWAFDVIIE 591 (965)
Q Consensus 527 t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l-----------~~~~~i~~----v~g~G~~~~i~~~~~ 591 (965)
+...+|++++++++.|+.+.. ..++..++...+.+.|++. ..+|++.. .++.|.|+.|.+. .
T Consensus 245 g~~~~~~~~~~~~~~l~~l~~--r~~~~~~n~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~l~-~ 321 (403)
T 3cog_A 245 GAVPSPIDCYLCNRGLKTLHV--RMEKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCTGCTGMVTFYIK-G 321 (403)
T ss_dssp CCCCCHHHHHHHHHHHTTHHH--HHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEES-S
T ss_pred CCCCCHHHHHHHHhhhhHHHH--HHHHHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcHHHHHhcCCCCceEEEEEec-C
Confidence 456789998888888865421 2344444555555555432 22333321 2345889999874 1
Q ss_pred CccchhhHHHHHHHHHHHcCcEEee-----------------------------c--CCEEEEeCCcccCHHHHHHHHHh
Q psy8199 592 DPEQIETFSKKFFVAALKNELLLRP-----------------------------I--GNTVYLMPPYILNKNEIQHMTSA 640 (965)
Q Consensus 592 ~~~~~~~~~~~~~~~l~~~Gi~~~~-----------------------------~--~~~lR~~p~~~~t~~~i~~~~~~ 640 (965)
. .....+.+.+.|++++. + .+.+|+++.+..++++++.+.++
T Consensus 322 ~-------~~~~~~~l~~~~i~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlSvg~e~~~d~i~~l~~a 394 (403)
T 3cog_A 322 T-------LQHAEIFLKNLKLFTLAESLGGFESLAELPAIMTHASVLKNDRDVLGISDTLIRLSVGLEDEEDLLEDLDQA 394 (403)
T ss_dssp C-------HHHHHHHHHHCSSSEECSCCSSSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHH
T ss_pred C-------HHHHHHHHHhCCcceEccCCCCcceeeecccccccccCCHHHHHhcCCCcCeEEEEeCCCCHHHHHHHHHHH
Confidence 1 12334555667775431 1 36899999888777777777776
Q ss_pred hhcc
Q psy8199 641 IFQT 644 (965)
Q Consensus 641 l~~~ 644 (965)
+...
T Consensus 395 l~~~ 398 (403)
T 3cog_A 395 LKAA 398 (403)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6543
|
| >1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.74 E-value=6e-17 Score=182.92 Aligned_cols=287 Identities=14% Similarity=0.146 Sum_probs=187.6
Q ss_pred CCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcC
Q psy8199 292 SNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQS 371 (965)
Q Consensus 292 ~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~ 371 (965)
..+.++...+++++++++++. +++++++||++|++.+++ .. .++++|++.++.||+... ...
T Consensus 50 ~~~~~~~~~~lr~~la~~~g~--~~~i~~~sGt~a~~~al~-~~--------~~gd~Vi~~~~~y~~~~~-~~~------ 111 (393)
T 1n8p_A 50 SRSQNPNRENLERAVAALENA--QYGLAFSSGSATTATILQ-SL--------PQGSHAVSIGDVYGGTHR-YFT------ 111 (393)
T ss_dssp TTTCCHHHHHHHHHHHHHTTC--SEEEEESCHHHHHHHHHH-TS--------CSSCEEEEESSCCHHHHH-HHH------
T ss_pred ecCCChhHHHHHHHHHHHhCC--CcEEEECChHHHHHHHHH-Hc--------CCCCEEEEeCCCchHHHH-HHH------
Confidence 355677888999999999853 478888889999999998 42 246789999999987421 110
Q ss_pred ccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHH
Q psy8199 372 FKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREI 451 (965)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l 451 (965)
.........+.++|. .| ++|+++++ +++++|++++ ++|++|.+.+ +++|.++
T Consensus 112 --~~~~~~G~~v~~v~~-----------------~d-~~l~~~i~---~~t~lv~~~~-~~nptG~~~~----l~~i~~l 163 (393)
T 1n8p_A 112 --KVANAHGVETSFTND-----------------LL-NDLPQLIK---ENTKLVWIET-PTNPTLKVTD----IQKVADL 163 (393)
T ss_dssp --HTSTTTCSCCEEESS-----------------HH-HHHHHHSC---SSEEEEEECS-SCTTTCCCCC----HHHHHHH
T ss_pred --HHHHHcCcEEEEeCC-----------------Ch-HHHHHhcc---cCceEEEEEC-CCCCcceecC----HHHHHHH
Confidence 000011123444443 36 88888774 4688999998 8999999887 9999999
Q ss_pred HHhc----CCeEEEeccccCCCcccccccccccCCCccee--eeccccCCCcccc-eeeeec-HHHHHhhhccCCccccc
Q psy8199 452 CNNY----NIHLIADEIAVGCGRTGKFFACEHAEIWPDFL--CLSKGITGGYLPL-SLVMTT-DKIYNSIYYKNNINIFL 523 (965)
Q Consensus 452 ~~~~----g~llI~DEv~tg~gr~G~~~~~~~~~~~pDiv--t~sK~l~gG~~pi-g~v~~~-~~i~~~~~~~~~~~~~~ 523 (965)
|++| |+++|+||+|+++.+ .... ...+|++ +++|.++++++++ |+++++ +++++.+... .
T Consensus 164 a~~~~~~~~~~livD~a~~~~~~-~~~~-----~~~~di~~~S~sK~~g~~G~rigG~~~~~~~~~~~~l~~~------~ 231 (393)
T 1n8p_A 164 IKKHAAGQDVILVVDNTFLSPYI-SNPL-----NFGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFL------Q 231 (393)
T ss_dssp HHHHTTTTTCEEEEECTTTHHHH-CCGG-----GGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHH------H
T ss_pred HHHhCCCCCCEEEEeCCcccccc-CCHH-----HcCCeEEEEECcccccCCCCceeEEEEeCCHHHHHHHHHH------H
Confidence 9999 999999999986533 2221 2247877 6889998755788 888875 7888777541 1
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcccC------CCcee----------eeec-e-eEEEE
Q psy8199 524 HSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLIT------HPKII----------NFRQ-K-GMIWA 585 (965)
Q Consensus 524 ~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~~------~~~i~----------~v~g-~-G~~~~ 585 (965)
.......++..++++.++++.+. ...++..++.+++.+.|++... +|.+. ..++ . |.++.
T Consensus 232 ~~~g~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~L~~~~~~l~~v~~p~l~~~~~~~~~~~~~~~~~~~~i~~ 309 (393)
T 1n8p_A 232 NAIGAIPSPFDAWLTHRGLKTLH--LRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMIS 309 (393)
T ss_dssp HHHCCCCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEE
T ss_pred HhcCCCCCHHHHHHHHhccchHH--HHHHHHHHHHHHHHHHHHhCCCCceEEECCCCCCCccHHHHHhhCCCCCCccEEE
Confidence 11122346888877777776442 2345555666667666654311 22221 1133 5 78888
Q ss_pred EEEeecCccchhhHHHHHHHHHHHcCcEE----------ee---c---------------CCEEEEeCCcccCHHHHHHH
Q psy8199 586 FDVIIEDPEQIETFSKKFFVAALKNELLL----------RP---I---------------GNTVYLMPPYILNKNEIQHM 637 (965)
Q Consensus 586 i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~----------~~---~---------------~~~lR~~p~~~~t~~~i~~~ 637 (965)
|.+. ++ ......+...+...++.+ .| . .+.+||+.....++++++.+
T Consensus 310 ~~l~-~~----~~~~~~~l~~l~~~~~~~s~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~iRlS~g~~~~~~~i~~l 384 (393)
T 1n8p_A 310 FRIK-GG----AEAASKFASSTRLFTLAESLGGIESLLEVPAVMTHGGIPKEAREASGVFDDLVRISVGIEDTDDLLEDI 384 (393)
T ss_dssp EEES-SC----HHHHHHHHHHCSSSEECSCCCCSSCEEECTTTTTSCSSCTTTTTTTSCCTTEEEEECCSSCHHHHHHHH
T ss_pred EEeC-Cc----HHHHHHHHhhCCcceECCCCCCCcceeeccccccccccCHHHHHhcCCCCCeEEEEEccCCHHHHHHHH
Confidence 8885 21 112334445443323221 11 0 26899999999999999888
Q ss_pred HHhhhc
Q psy8199 638 TSAIFQ 643 (965)
Q Consensus 638 ~~~l~~ 643 (965)
.+++.+
T Consensus 385 ~~al~~ 390 (393)
T 1n8p_A 385 KQALKQ 390 (393)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887754
|
| >1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.1e-16 Score=182.39 Aligned_cols=241 Identities=15% Similarity=0.137 Sum_probs=162.1
Q ss_pred CCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcC
Q psy8199 292 SNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQS 371 (965)
Q Consensus 292 ~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~ 371 (965)
+.+.++...+++++++++.+. +..++++||++|+..+++...+ ++++||+.++.|++.. ..+..
T Consensus 109 ~r~~~~~~~~l~~~lA~l~g~--~~~v~~~sG~~Ai~~al~~l~~--------~Gd~Vi~~~~~y~~~~-~~~~~----- 172 (445)
T 1qgn_A 109 GRYGNPTTVVLEEKISALEGA--ESTLLMASGMCASTVMLLALVP--------AGGHIVTTTDCYRKTR-IFIET----- 172 (445)
T ss_dssp GGGCCHHHHHHHHHHHHHHTC--SEEEEESCHHHHHHHHHHHHSC--------SSCEEEEETTSCHHHH-HHHHH-----
T ss_pred cCCCChHHHHHHHHHHHHhCC--CcEEEeCCHHHHHHHHHHHHhC--------CCCEEEEcCCCchhHH-HHHHH-----
Confidence 445678889999999999863 4777788899999999986532 4688999999988742 11100
Q ss_pred ccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHH
Q psy8199 372 FKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREI 451 (965)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l 451 (965)
........+.+++. .|+++|++++++ +.+++|++|+ ++|++|.+.+ +++|.++
T Consensus 173 ---~~~~~G~~v~~v~~-----------------~d~~~l~~ai~~--~tv~lV~le~-p~NptG~v~d----l~~I~~l 225 (445)
T 1qgn_A 173 ---ILPKMGITATVIDP-----------------ADVGALELALNQ--KKVNLFFTES-PTNPFLRCVD----IELVSKL 225 (445)
T ss_dssp ---TGGGGTCEEEEECS-----------------SCHHHHHHHHHH--SCEEEEEEES-SCTTTCCCCC----HHHHHHH
T ss_pred ---HHHHcCCEEEEeCC-----------------CCHHHHHHHhcc--CCCCEEEEeC-CCCCCCcccC----HHHHHHH
Confidence 00111123444443 267889999874 2338899999 8999999887 8999999
Q ss_pred HHhcCCeEEEeccccCCCcccccccccccCCCcceee--eccccCCCc-ccceeeeecHHHHHhhhccCCcccccccCCC
Q psy8199 452 CNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLC--LSKGITGGY-LPLSLVMTTDKIYNSIYYKNNINIFLHSHSY 528 (965)
Q Consensus 452 ~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt--~sK~l~gG~-~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~ 528 (965)
|++||+++|+||+|+.+ .. .......+|+++ ++|.++|+. .++|++++++++++.+... ......
T Consensus 226 a~~~g~~livD~a~~~~-~~-----~~~~~~g~Div~~S~sK~~gg~gd~~~G~l~~~~~l~~~l~~~------~~~~g~ 293 (445)
T 1qgn_A 226 CHEKGALVCIDGTFATP-LN-----QKALALGADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNL------HHILGG 293 (445)
T ss_dssp HHHTTCEEEEECTTTCT-TT-----CCTTTTTCSEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHHH------HHHHCC
T ss_pred HHHcCCEEEEECCCccc-cc-----CCccccCCEEEEECCcccccccccceEEEEEECHHHHHHHHHH------HHHhCC
Confidence 99999999999999632 11 122345689886 789988742 3689999999988877541 111112
Q ss_pred CCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcccC-----CCcee----------eeeceeEEEEEEEe
Q psy8199 529 SGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLIT-----HPKII----------NFRQKGMIWAFDVI 589 (965)
Q Consensus 529 ~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~~-----~~~i~----------~v~g~G~~~~i~~~ 589 (965)
..+|+.++.+++.|+.+.. ..++..++.+++.+.|++... +|++. .+++.|.++.|++.
T Consensus 294 ~~~~~~a~~~~~~l~~l~~--r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l~ 367 (445)
T 1qgn_A 294 ALNPNAAYLIIRGMKTLHL--RVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVD 367 (445)
T ss_dssp CCCHHHHHHHHHHGGGHHH--HHHHHHHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEES
T ss_pred CCCHHHHHHHHHhHHHHHH--HHHHHHHHHHHHHHHHhcCCCceEEECCCCCCCchHHHHHHhccCCCcEEEEEEC
Confidence 2467777777777765431 234455566777777765411 12110 12357889999885
|
| >2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.2e-16 Score=187.43 Aligned_cols=358 Identities=13% Similarity=0.047 Sum_probs=200.1
Q ss_pred CCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHh-hcCC-----CCCeEEEcCChhH
Q psy8199 252 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSS-LTQY-----KLGHCFYGSDGAS 325 (965)
Q Consensus 252 dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~-~~~~-----~~~~v~~~~sGse 325 (965)
+|..+++.....+....++.+|.+++++.+++.. ..|....+..+...++++.+.+ .... +.++|++++|+++
T Consensus 98 ~~~~~l~~~i~l~~g~~~~~~~~~~~al~~~~~~-~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~~~I~~t~G~~e 176 (546)
T 2zy4_A 98 EGVRFLGKSLSYVRDQLGLDPAAFLHEMVDGILG-CNYPVPPRMLNISEKIVRQYIIREMGADAIPSESVNLFAVEGGTA 176 (546)
T ss_dssp HHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHT-CSCCSSSSCCHHHHHHHHHHHHHHTTCTTSCGGGEEEEEEEHHHH
T ss_pred CcchhHHhhhecccCCCCCCChHHHHHHHHhhhc-CCCCCCcCCHHHHHHHHHHHHHHhccCCCCCCCcceEEEECCHHH
Confidence 3555333222323334577888899988887753 3344344556677777776543 2211 2479999999999
Q ss_pred HHHHHHHHHHH--HHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHH
Q psy8199 326 AVEVALKMSFH--YWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEI 403 (965)
Q Consensus 326 A~~~Al~~a~~--~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (965)
|+..++++... +. .+++.|++.+++|+++...+...+. ....+.+|.....+..
T Consensus 177 al~~~~~~l~~~~l~-----~~Gd~Vlv~~P~y~~~~~~~~~~~~-----------g~~~~~v~~~~~~~~~-------- 232 (546)
T 2zy4_A 177 AMAYIFESLKLNGLL-----KAGDKVAIGMPVFTPYIEIPELAQY-----------ALEEVAINADPSLNWQ-------- 232 (546)
T ss_dssp HHHHHHHHHHHTTSS-----CTTCEEEEEESCCHHHHHHHHSTTS-----------CCEEEEEECBGGGTTB--------
T ss_pred HHHHHHHHhhhhhcC-----CCCCEEEEeCCCCccHHHHHHHcCC-----------CcEEEEEecCcccCCC--------
Confidence 99999986421 10 2468899999999998544322110 0112333322111000
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHH--HhcCCeEEEeccccCCCccccccccccc-
Q psy8199 404 ARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREIC--NNYNIHLIADEIAVGCGRTGKFFACEHA- 480 (965)
Q Consensus 404 ~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~--~~~g~llI~DEv~tg~gr~G~~~~~~~~- 480 (965)
.|+++|++++. .++.+|++.. ++|++|.+. +.+.+++|.++| ++||+++|+||+|.+|....... ....
T Consensus 233 --~d~~~l~~~~~---~~~k~v~l~~-p~NPtG~~~-~~~~l~~l~~~a~~~~~~~~ii~De~y~~~~~~~~s~-~~~~~ 304 (546)
T 2zy4_A 233 --YPDSELDKLKD---PAIKIFFCVN-PSNPPSVKM-DQRSLERVRNIVAEHRPDLMILTDDVYGTFADDFQSL-FAICP 304 (546)
T ss_dssp --CCHHHHGGGGS---TTEEEEEEES-SCSSSCBCC-CHHHHHHHHHHHHHTCTTCEEEEECTTGGGSTTCCCH-HHHCG
T ss_pred --CCHHHHHHhhC---CCCeEEEEEC-CCCCCCccC-CHHHHHHHHHHHHhccCCcEEEEeCcchhhcccCcCH-HHhCC
Confidence 25677776552 3455555555 599999776 677799999999 88999999999999886421111 1111
Q ss_pred CCCcceeeeccccC-CCcccceeeeecHH-HHHhhhccC----------Ccc-----c---------------ccccCCC
Q psy8199 481 EIWPDFLCLSKGIT-GGYLPLSLVMTTDK-IYNSIYYKN----------NIN-----I---------------FLHSHSY 528 (965)
Q Consensus 481 ~~~pDivt~sK~l~-gG~~pig~v~~~~~-i~~~~~~~~----------~~~-----~---------------~~~~~t~ 528 (965)
+....+.+|||.++ .| +++|+++++++ +++.+.... ... + +....+.
T Consensus 305 ~~~i~~~S~SK~~g~~G-lRiG~~~~~~~~l~~~l~~~~p~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 383 (546)
T 2zy4_A 305 ENTLLVYSFSKYFGATG-WRLGVVAAHQQNVFDLALDKLQESEKVALDHRYRSLLPDVRSLKFIDRLVADSRAVALNHTA 383 (546)
T ss_dssp GGEEEEEESTTTTTCGG-GCEEEEEEESSCHHHHHHHTSCHHHHHHHHHHHTTTCSCGGGCCHHHHHHHHTTTTTTGGGC
T ss_pred CCEEEEEeCccccCCCC-cceEEEEECCHHHHHHHHhhcchhhhHHHHHHhhhccccccchhhhhhhhhhhHHHHhhccC
Confidence 11122347899886 45 89999999875 766653100 000 0 0012234
Q ss_pred CCCHHHHHHH-HHHH-HHHhc-ccHHHHHHHHHHHHHHHHHcccCCCceeeeeceeE-EEEEEEee-cCccchh------
Q psy8199 529 SGNPLACCAA-LATL-EIFNK-DNILQRISQDMKKITKALTSLITHPKIINFRQKGM-IWAFDVII-EDPEQIE------ 597 (965)
Q Consensus 529 ~~~~~~~aaa-~a~L-~~~~~-~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~G~-~~~i~~~~-~~~~~~~------ 597 (965)
+.+.+++.++ +.++ ..+.+ +...+++++.-+.-++.+.+....+ +....+.|. ++.+++.. .......
T Consensus 384 ~~s~~~Q~a~a~~a~~all~~~~~~~~~~r~~~~~r~~~l~~~L~~~-~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~wl 462 (546)
T 2zy4_A 384 GLSTPQQVQMALFSLFALMDEADEYKHTLKQLIRRRETTLYRELGMP-PLRDENAVDYYTLIDLQDVTAKLYGEAFSEWA 462 (546)
T ss_dssp SSCHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHGGGTSS-CCCCTTBCCSEEEEEHHHHHHHHHCHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCC-cccCCCCeeEEEEEEHHHhhcccccHHHHHHh
Confidence 5566666553 2111 22322 2333333333222222222211121 222334444 44555420 0000000
Q ss_pred ----hHHHHHHHHHHHcCcEEeec------CCEEEEeCCcccCHHHHHHHHHhhhccc
Q psy8199 598 ----TFSKKFFVAALKNELLLRPI------GNTVYLMPPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 598 ----~~~~~~~~~l~~~Gi~~~~~------~~~lR~~p~~~~t~~~i~~~~~~l~~~~ 645 (965)
.....+.+.+.++||.+.|+ .+++|++.. ..++++++++++++.+.+
T Consensus 463 ~~~~~~~~~l~~ll~~~gV~v~pG~~F~~~~~~iRis~~-~~~~e~i~~~~~~l~~~l 519 (546)
T 2zy4_A 463 VKQSSTGDMLFRIADETGIVLLPGRGFGSNRPSGRASLA-NLNEYEYAAIGRALRKMA 519 (546)
T ss_dssp HHHCCHHHHHHHHHHHHSCCCEESSCTTCSSCEEEEESS-SSCHHHHHHHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHCCEEEeCccccCCCCCeEEEEec-cCCHHHHHHHHHHHHHHH
Confidence 01223567788999999984 258999965 458889999998887654
|
| >2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=5.1e-16 Score=177.42 Aligned_cols=316 Identities=13% Similarity=0.115 Sum_probs=198.5
Q ss_pred CHHHHHHHHHHHhhccc--cccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEE
Q psy8199 272 NSYINKALKNQLNKLEH--VMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKF 349 (965)
Q Consensus 272 ~p~v~~av~~~~~~~~~--~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~v 349 (965)
+|++.+++.++++.... +....+..+...++++.+++.++ .+++++++||++|++.+++.+.. .++++|
T Consensus 15 ~~~~~~a~~~~~~~~~~~~~~~~~g~~~l~~~l~~~la~~~g--~~~~i~~~~gt~al~~~~~~~~~-------~~gd~V 85 (418)
T 2c81_A 15 SDRTRRKIEEVFQSNRWAISGYWTGEESMERKFAKAFADFNG--VPYCVPTTSGSTALMLALEALGI-------GEGDEV 85 (418)
T ss_dssp CHHHHHHHHHHHHHTCCSTTSBCCSSCCHHHHHHHHHHHHHT--CSEEEEESCHHHHHHHHHHHTTC-------CTTCEE
T ss_pred CHHHHHHHHHHHhcCCccccCcccCCHHHHHHHHHHHHHHhC--CCcEEEeCCHHHHHHHHHHHcCC-------CCcCEE
Confidence 69999999999876421 22223345568899999999985 44788999999999999987621 256789
Q ss_pred EEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEcc
Q psy8199 350 ICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEP 429 (965)
Q Consensus 350 i~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep 429 (965)
++.+++|+++.......+. .+..++.....+. .|+++|++++. +++++|+++
T Consensus 86 l~~~~~~~~~~~~~~~~g~-------------~~~~~~~~~~~~~-----------~d~~~l~~~i~---~~~~~v~~~- 137 (418)
T 2c81_A 86 IVPSLTWIATATAVLNVNA-------------LPVFVDVEADTYC-----------IDPQLIKSAIT---DKTKAIIPV- 137 (418)
T ss_dssp EEESSSCTHHHHHHHHTTC-------------EEEEECBCTTTCS-----------BCHHHHGGGCC---TTEEEECCB-
T ss_pred EECCCccHhHHHHHHHcCC-------------EEEEEecCCCCCC-----------cCHHHHHHhhC---CCCeEEEEe-
Confidence 9999999988543322211 2334443211111 26788887774 356777654
Q ss_pred ccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCc-ccccccccccCCCccee--ee--ccccCCCcccceeee
Q psy8199 430 LVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGR-TGKFFACEHAEIWPDFL--CL--SKGITGGYLPLSLVM 504 (965)
Q Consensus 430 ~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr-~G~~~~~~~~~~~pDiv--t~--sK~l~gG~~pig~v~ 504 (965)
+++|...+ +++|.++|++||+++|+||+|+.+.. .+.. .+..+|++ +| +|.+++| ++|+++
T Consensus 138 ---~~~G~~~~----~~~i~~~~~~~~~~li~D~a~~~~~~~~~~~-----~~~~~~~~~~s~s~~K~~~~g--~~g~~~ 203 (418)
T 2c81_A 138 ---HLFGSMAN----MDEINEIAQEHNLFVIEDCAQSHGSVWNNQR-----AGTIGDIGAFSCQQGKVLTAG--EGGIIV 203 (418)
T ss_dssp ---CCTTCCCC----HHHHHHHHHHTTCEEEEECTTCTTCEETTEE-----TTSSSSEEEEECCTTSSSCSS--SCEEEE
T ss_pred ---CCcCCccc----HHHHHHHHHHCCCEEEEECcccccCccCCEe-----cccccceEEEeccCCcccCCC--CeEEEE
Confidence 35676655 99999999999999999999986642 2221 12223444 56 8999874 789988
Q ss_pred ec-HHHHHhhhc---cCCcc---------ccc--------ccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Q psy8199 505 TT-DKIYNSIYY---KNNIN---------IFL--------HSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITK 563 (965)
Q Consensus 505 ~~-~~i~~~~~~---~~~~~---------~~~--------~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~ 563 (965)
++ +++++.+.. .+... .+. .+..+..+++.++.+...++.+ +...++.+++.+++.+
T Consensus 204 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~~--~~~~~~~~~~~~~l~~ 281 (418)
T 2c81_A 204 TKNPRLFELIQQLRADSRVYCDDSSELMHGDMQLVKKGDIQGSNYCLSEFQSAILLDQLQEL--DDKNAIREKNAMFLND 281 (418)
T ss_dssp ESCHHHHHHHHHHHBTTEEECSCGGGCCTTCBSEEECCSSCCCBCCCCHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHH
T ss_pred ECCHHHHHHHHHHHHhCccccccccccccchhhccccccccCcCCCcCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 84 677665542 11000 011 0111123555554444444433 3356777777888888
Q ss_pred HHHcccCCCceeee-ecee----E--EEEEEEeecCccchhhHHHHHHHHHHHc-CcE---Eeec---------------
Q psy8199 564 ALTSLITHPKIINF-RQKG----M--IWAFDVIIEDPEQIETFSKKFFVAALKN-ELL---LRPI--------------- 617 (965)
Q Consensus 564 ~L~~l~~~~~i~~v-~g~G----~--~~~i~~~~~~~~~~~~~~~~~~~~l~~~-Gi~---~~~~--------------- 617 (965)
.|.++ |++... ...| . ++.+.+. +..........+.+.|.++ ||. +.++
T Consensus 282 ~L~~~---~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~L~~~~gI~~~~v~~~~~p~~~~~~~~~~~~ 356 (418)
T 2c81_A 282 ALSKI---DGIKVMKRPPQVSRQTYYGYVFRFD--PVKFGGLNADQFCEILREKLNMGTFYLHPPYLPVHKNPLFCPWTK 356 (418)
T ss_dssp HHTTS---TTEEECCCCTTEEECCCSEEEEEEC--GGGTTTCCHHHHHHHHHHHHTCCTTTEECCCCCGGGCTTCCGGGC
T ss_pred HhccC---CCcccCCCCCCCcccccEEEEEEEc--cccccccCHHHHHHHHHHcCCCCcccccccccccccCchhccccc
Confidence 77654 444432 2222 2 3334443 1000001144678888888 999 7542
Q ss_pred ----------------C----------CEEEEeCCccc-CHHHHHHHHHhhhccc
Q psy8199 618 ----------------G----------NTVYLMPPYIL-NKNEIQHMTSAIFQTF 645 (965)
Q Consensus 618 ----------------~----------~~lR~~p~~~~-t~~~i~~~~~~l~~~~ 645 (965)
+ +.+|++++..+ ++++++.+++++.+..
T Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~gt~edi~~~~~~l~~~~ 411 (418)
T 2c81_A 357 NRYLKSVRKTEAYWRGLHYPVSERASGQSIVIHHAILLAEPSHLSLLVDAVAELA 411 (418)
T ss_dssp TTSCHHHHCCHHHHHTCCCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccCCChHHHHHHhCEEEecCCccCCCHHHHHHHHHHHHHHH
Confidence 1 48999999999 9999999999887543
|
| >2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.3e-15 Score=178.52 Aligned_cols=315 Identities=10% Similarity=0.035 Sum_probs=193.6
Q ss_pred HHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHH----HhcCCC--CceEEEEEcCCccCCccccccccCCc
Q psy8199 297 KPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYW----YNKGFL--NKKKFICLQNSYHGETLGALAVTNIQ 370 (965)
Q Consensus 297 ~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~----~~~g~~--~~~~vi~~~~~yHg~~~~~~~~~~~~ 370 (965)
+...++.++++++++.+.+.++|++|||+||..|+++++.++ ...|.. ++..|++.+.. |.+...+....+.
T Consensus 148 ~le~~~~~~la~l~g~~~~~~~~t~ggtea~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~s~~~-h~s~~~~~~~~g~- 225 (515)
T 2jis_A 148 LMEEEVLRKLRALVGWSSGDGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKEC-HYSIQKGAAFLGL- 225 (515)
T ss_dssp HHHHHHHHHHHHHHTCSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTS-CTHHHHHHHHTTS-
T ss_pred HHHHHHHHHHHHHhCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCCc-cHHHHHHHHHcCC-
Confidence 334667788999997666799999999999999999987643 112211 12256666544 5543333322221
Q ss_pred CccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhC---CCcEEEEEEccccccCCCcccCChHHHHH
Q psy8199 371 SFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKN---HNKIAAIIIEPLVQCAGGMIMYDSIYLKL 447 (965)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~---~~~~aaii~ep~v~~~~G~~~~~~~~l~~ 447 (965)
....+..+|.... +. .|+++|+++|++. +.++++|++.. +++++|.+.+ +++
T Consensus 226 --------g~~~v~~v~~~~~-~~-----------~d~~~L~~~i~~~~~~g~~~~~Vv~~~-~~n~tG~i~~----l~~ 280 (515)
T 2jis_A 226 --------GTDSVRVVKADER-GK-----------MVPEDLERQIGMAEAEGAVPFLVSATS-GTTVLGAFDP----LEA 280 (515)
T ss_dssp --------CGGGEEEECBCTT-SC-----------BCHHHHHHHHHHHHHTTCEEEEEEEEB-SCTTTCCBCC----HHH
T ss_pred --------CCCcEEEEecCCC-Cc-----------CCHHHHHHHHHHHHhCCCCcEEEEEeC-CCCCCCCccC----HHH
Confidence 0013455554321 11 2678888888642 33577888877 7889998887 999
Q ss_pred HHHHHHhcCCeEEEeccccCCCcccccccccccCC-Ccceeee--ccccCCCcccceeeeecHH--HHHhhhccCCcccc
Q psy8199 448 VREICNNYNIHLIADEIAVGCGRTGKFFACEHAEI-WPDFLCL--SKGITGGYLPLSLVMTTDK--IYNSIYYKNNINIF 522 (965)
Q Consensus 448 l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~-~pDivt~--sK~l~gG~~pig~v~~~~~--i~~~~~~~~~~~~~ 522 (965)
|.++|++||+++|+|++|+++......+.....++ .+|++++ +|.++++ +++|+++++++ +++..... ..++
T Consensus 281 I~~la~~~g~~l~vD~a~~~~~~~~~~~~~~~~g~~~aD~v~~s~hK~l~~p-~g~G~l~~~~~~~~~~~~~~~--~~~y 357 (515)
T 2jis_A 281 IADVCQRHGLWLHVDAAWGGSVLLSQTHRHLLDGIQRADSVAWNPHKLLAAG-LQCSALLLQDTSNLLKRCHGS--QASY 357 (515)
T ss_dssp HHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCC-SCCEEEEESCCSCHHHHHHCC------
T ss_pred HHHHHHHcCCeEEEehhhhhHHHhChhhHhhcCCCccCCEEEECcccccCCC-CCeeEEEEeChHHHHHHHhcC--Cchh
Confidence 99999999999999999987755433333334465 7899987 7988766 58899998876 65532110 0001
Q ss_pred cc-----------c------CCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcccCCCceeeee-ceeEEE
Q psy8199 523 LH-----------S------HSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFR-QKGMIW 584 (965)
Q Consensus 523 ~~-----------~------~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~-g~G~~~ 584 (965)
.. . .+.....+++.++++++....-++..++..++.+++.+.|+++ |++..+. +....+
T Consensus 358 l~~~~~~~~~~~~~~~~~~~~~rr~~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~---~g~~~~~~~~~~~v 434 (515)
T 2jis_A 358 LFQQDKFYDVALDTGDKVVQCGRRVDCLKLWLMWKAQGDQGLERRIDQAFVLARYLVEEMKKR---EGFELVMEPEFVNV 434 (515)
T ss_dssp -----CCSCGGGCCGGGCSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS---TTEEESSCCSSSEE
T ss_pred ccCCcccccccCCCCCCCCCCCCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC---CCEEEeCCCCeeEE
Confidence 10 0 1111224555555555542222346677778888888888764 4444221 223344
Q ss_pred EEEEeec--Ccc-chhhH-------HHHHHHHHHHcCcEEee----cC--CEEEEeC-CcccCHHHHHHHHHhhhcc
Q psy8199 585 AFDVIIE--DPE-QIETF-------SKKFFVAALKNELLLRP----IG--NTVYLMP-PYILNKNEIQHMTSAIFQT 644 (965)
Q Consensus 585 ~i~~~~~--~~~-~~~~~-------~~~~~~~l~~~Gi~~~~----~~--~~lR~~p-~~~~t~~~i~~~~~~l~~~ 644 (965)
.+..... .+. ....+ ...+.+.+.+.|++... .+ +++|+++ +...++++++.+++.+.+.
T Consensus 435 ~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~lRis~~~~~~t~edid~~~~~l~~~ 511 (515)
T 2jis_A 435 CFWFVPPSLRGKQESPDYHERLSKVAPVLKERMVKEGSMMIGYQPHGTRGNFFRVVVANSALTCADMDFLLNELERL 511 (515)
T ss_dssp EEEECCGGGTTCTTSTTHHHHHHTHHHHHHHHHHHHTSCEEEEEEETTEEEEEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred EEEEeCccccccccchhHHHHHHHHHHHHHHHHHhcCCEEEEEEEECCceEEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 4444211 000 01111 22367788899975532 12 5899999 8889999999999988654
|
| >2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.8e-15 Score=177.05 Aligned_cols=314 Identities=11% Similarity=0.050 Sum_probs=190.5
Q ss_pred HHHHHHHHHhhcCCC--CCeEEEcCChhHHHHHHHHHHHHHHH----hcCCCC--ceEEEEEcCCccCCccccccccCCc
Q psy8199 299 VIKLSEKLSSLTQYK--LGHCFYGSDGASAVEVALKMSFHYWY----NKGFLN--KKKFICLQNSYHGETLGALAVTNIQ 370 (965)
Q Consensus 299 ~~~la~~l~~~~~~~--~~~v~~~~sGseA~~~Al~~a~~~~~----~~g~~~--~~~vi~~~~~yHg~~~~~~~~~~~~ 370 (965)
..++.++++++++.+ .+.++|++|||+|+..|++.++.++. ..|... +..|++.+.+| .+...+....+.
T Consensus 134 e~~~~~~la~~~g~~~~~~~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~~~v~~s~~~h-~s~~~~~~~~g~- 211 (504)
T 2okj_A 134 EQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSH-YSIKKAGAALGF- 211 (504)
T ss_dssp HHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSC-THHHHHHHHTTS-
T ss_pred HHHHHHHHHHHhCCCCCCCCEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCcch-HHHHHHHHHcCC-
Confidence 445667788888755 56899999999999999999976421 112110 22466655444 432222221110
Q ss_pred CccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhC---CCcEEEEEEccccccCCCcccCChHHHHH
Q psy8199 371 SFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKN---HNKIAAIIIEPLVQCAGGMIMYDSIYLKL 447 (965)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~---~~~~aaii~ep~v~~~~G~~~~~~~~l~~ 447 (965)
+ ...+..+|.... +. .|+++|+++|++. +..+++|++.. +++++|.+.+ +++
T Consensus 212 g--------~~~v~~v~~~~~-~~-----------~d~~~L~~~i~~~~~~g~~~~~V~~~~-~~~~tG~i~~----l~~ 266 (504)
T 2okj_A 212 G--------TDNVILIKCNER-GK-----------IIPADFEAKILEAKQKGYVPFYVNATA-GTTVYGAFDP----IQE 266 (504)
T ss_dssp C--------GGGEEEECBCTT-SC-----------BCHHHHHHHHHHHHHTTCEEEEEEECB-SCSSSCCBCC----HHH
T ss_pred C--------cccEEEEecCCC-CC-----------CCHHHHHHHHHHHHHCCCCceEEEEeC-CCCCCCCcCC----HHH
Confidence 0 013455554321 11 2688898888642 22577777776 6888998877 999
Q ss_pred HHHHHHhcCCeEEEeccccCCCcccccccccccCC-Ccceeeec--cccCCCcccceeeeecH-HHHHhhhccCCccccc
Q psy8199 448 VREICNNYNIHLIADEIAVGCGRTGKFFACEHAEI-WPDFLCLS--KGITGGYLPLSLVMTTD-KIYNSIYYKNNINIFL 523 (965)
Q Consensus 448 l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~-~pDivt~s--K~l~gG~~pig~v~~~~-~i~~~~~~~~~~~~~~ 523 (965)
|.++|++||+++|+|++|.|+......+.....++ .+|+++++ |.++++ +++|++++++ +++...... ..++.
T Consensus 267 I~~la~~~g~~lhvD~a~~~~~~~~~~~~~~~~g~~~~D~i~~~~hK~~~~p-~~~g~l~~~~~~~~~~~~~~--~~~~l 343 (504)
T 2okj_A 267 IADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVL-LQCSAILVKEKGILQGCNQM--CAGYL 343 (504)
T ss_dssp HHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCC-SCCEEEEESSTTHHHHHHCC--CCSSS
T ss_pred HHHHHHHcCCEEEEehhhhhHHHhCHhhHhhcCCcccCCEEEECchhhcCCC-cceEEEEEECHHHHHHHhcC--CCccc
Confidence 99999999999999999987643222222223344 68999875 887766 5899999876 465432110 01111
Q ss_pred c-cC----------------CCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcccCCCceeee---eceeEE
Q psy8199 524 H-SH----------------SYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINF---RQKGMI 583 (965)
Q Consensus 524 ~-~~----------------t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v---~g~G~~ 583 (965)
. +. +...+++++.++++++..-.-++..++..++.+++.+.|+++ +++..+ .+.+.+
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~rr~~~l~~~a~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~---~~~~~~~~~~p~~~~ 420 (504)
T 2okj_A 344 FQPDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNR---EEFEMVFNGEPEHTN 420 (504)
T ss_dssp CCSCCSSCGGGCCGGGSSCSSCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---TTEEESSSSCCSSSC
T ss_pred cCCcccccCcCCcccCCCCCCCCccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcC---CCEEEEecCCCCeEE
Confidence 1 11 112246677766666642212335667777888888877654 455433 244555
Q ss_pred EEEEEeecC--c----cch----hhHHHHHHHHHHHcCcE-Eee--c-C--CEEEEeCC-cccCHHHHHHHHHhhhccc
Q psy8199 584 WAFDVIIED--P----EQI----ETFSKKFFVAALKNELL-LRP--I-G--NTVYLMPP-YILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 584 ~~i~~~~~~--~----~~~----~~~~~~~~~~l~~~Gi~-~~~--~-~--~~lR~~p~-~~~t~~~i~~~~~~l~~~~ 645 (965)
+.|...... . ... ......+.+.|.++|++ +.+ . + +++|+++. ...++++++.+++++.+..
T Consensus 421 v~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~~~~~~~~lRis~~~~~~t~edi~~~~~~l~~~~ 499 (504)
T 2okj_A 421 VCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIERLG 499 (504)
T ss_dssp EEEEECCGGGSSCCCCHHHHHHHTTHHHHHHHHHHHHTSCEEEEEEETTEEEEEEECCCCTTCCHHHHHHHHHHHHHHH
T ss_pred EEEEEeCccccccccchhhHHHHHHHHHHHHHHHHhCCcEEEEeeEECCceEEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 555543110 0 000 11234678889999954 332 2 2 48999985 7789999999999887543
|
| >2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=5.9e-15 Score=170.24 Aligned_cols=334 Identities=8% Similarity=-0.037 Sum_probs=196.0
Q ss_pred CCCHHHHHHHHHHHhhc-cccccCCCCcHHHHHHHHHHHhhcCCCCCe-----EEEcCChhHHHHHHHHHHHHHHHh---
Q psy8199 270 HSNSYINKALKNQLNKL-EHVMLSNLTHKPVIKLSEKLSSLTQYKLGH-----CFYGSDGASAVEVALKMSFHYWYN--- 340 (965)
Q Consensus 270 h~~p~v~~av~~~~~~~-~~~~~~~~~~~~~~~la~~l~~~~~~~~~~-----v~~~~sGseA~~~Al~~a~~~~~~--- 340 (965)
+.+|.+.+++.++++.. .++..+....+...++.+.++++++...+. +++++|||||+..|+..++..+..
T Consensus 53 ~~~~~v~e~~~~a~~~~~~~~~~~~~~~~l~~~~~~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~~~~~~~~~ 132 (452)
T 2dgk_A 53 WDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRME 132 (452)
T ss_dssp CCCHHHHHHHHHTTTCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHhccCCCChhhChhHHHHHHHHHHHHHHHhCCCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHH
Confidence 35789999998877642 111111122344567788889988755443 899999999999999988753321
Q ss_pred -cCCC-CceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhC
Q psy8199 341 -KGFL-NKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKN 418 (965)
Q Consensus 341 -~g~~-~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~ 418 (965)
.|.. .+++||+.+ +|.+...+....| ..++.+|.....+. .|+++|+++|++
T Consensus 133 ~~G~~~~~~~vi~~~--~h~~~~~~~~~~G------------~~v~~v~~~~~~~~-----------~d~~~l~~~i~~- 186 (452)
T 2dgk_A 133 AAGKPTDKPNLVCGP--VQICWHKFARYWD------------VELREIPMRPGQLF-----------MDPKRMIEACDE- 186 (452)
T ss_dssp HTTCCCSCCEEEESS--CCHHHHHHHHHTT------------CEEEECCCBTTBCS-----------CCHHHHHHHCCT-
T ss_pred hcCCCCCCcEEEECC--CcHHHHHHHHHcC------------ceEEEEecCCCCCe-----------ECHHHHHHHHhh-
Confidence 2211 135677766 5544222222111 13444444221111 268899988853
Q ss_pred CCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhc------CCeEEEeccccCCCc--ccccccccccCC-Ccceeee
Q psy8199 419 HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNY------NIHLIADEIAVGCGR--TGKFFACEHAEI-WPDFLCL 489 (965)
Q Consensus 419 ~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~------g~llI~DEv~tg~gr--~G~~~~~~~~~~-~pDivt~ 489 (965)
++.+|++.. +++++|.+.+ +++|.++|++| |+++|+|++|.++.. ........ +.. ..|.+++
T Consensus 187 --~t~~v~~~~-~~n~tG~~~~----l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~-~~~~~~d~~~~ 258 (452)
T 2dgk_A 187 --NTIGVVPTF-GVTYTGNYEF----PQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWD-FRLPRVKSISA 258 (452)
T ss_dssp --TEEEEECBB-SCTTTCBBCC----HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCS-TTSTTEEEEEE
T ss_pred --CCEEEEEEc-CCcCCcccCC----HHHHHHHHHHHhhccCCCCcEEEEcccHHHHHHhhCccchhh-cCCCCCcEEEE
Confidence 456666655 5788999887 99999999996 999999999987532 01101111 111 3577766
Q ss_pred c--cccCCCcccceeeeecHH-HH-HhhhccCCcccccc--------cCCCCC-CHHHHHHHHHHHHHHhcccHHHHHHH
Q psy8199 490 S--KGITGGYLPLSLVMTTDK-IY-NSIYYKNNINIFLH--------SHSYSG-NPLACCAALATLEIFNKDNILQRISQ 556 (965)
Q Consensus 490 s--K~l~gG~~pig~v~~~~~-i~-~~~~~~~~~~~~~~--------~~t~~~-~~~~~aaa~a~L~~~~~~~~~~~~~~ 556 (965)
+ |.+.+| +.+|+++++++ ++ +.+... ..+.. .++-.+ ..+++.+++..|..-.-++..++..+
T Consensus 259 ~~hK~~~~~-~~~G~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~r~~~~~~~~~aal~~lg~~g~~~~~~~~~~ 334 (452)
T 2dgk_A 259 SGHKFGLAP-LGCGWVIWRDEEALPQELVFN---VDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQ 334 (452)
T ss_dssp ETTTTTCCC-SSCEEEEESSGGGSCGGGCEE---ECCTTCCEEECCSCCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccccCCC-CCeEEEEEcCHHHHHHHhccC---ccccCCCCCCcccCCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4 854444 78999998643 33 443210 00110 111111 23344444444321111235666777
Q ss_pred HHHHHHHHHHcccCCCceeeee-----ceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEee----c----CCEEEE
Q psy8199 557 DMKKITKALTSLITHPKIINFR-----QKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRP----I----GNTVYL 623 (965)
Q Consensus 557 ~~~~l~~~L~~l~~~~~i~~v~-----g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~----~----~~~lR~ 623 (965)
+.+++.+.|+++ +++..+. ....++.+.+. .. .........+.+.|.++|+.++. . .+.+|+
T Consensus 335 ~a~~l~~~L~~~---~~~~~~~~~~~~~~~~~v~f~~~-~~-~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRi 409 (452)
T 2dgk_A 335 VAAYLADEIAKL---GPYEFICTGRPDEGIPAVCFKLK-DG-EDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRI 409 (452)
T ss_dssp HHHHHHHHHHTT---SSEEEEEECCTTTBSSEEEEEEC-TT-CCCSCCHHHHHHHHHHTTCBCCEEECSTTCTTCEEEEE
T ss_pred HHHHHHHHHHhC---CCeEEecCCCCCCCeEEEEEEec-Cc-ccccCCHHHHHHHHHhcCCeeeeeeCCcccCCeEEEEE
Confidence 778888877664 4444332 35567777664 11 00000124688889999996542 1 248999
Q ss_pred eCCcccCHHHHHHHHHhhhcccc
Q psy8199 624 MPPYILNKNEIQHMTSAIFQTFN 646 (965)
Q Consensus 624 ~p~~~~t~~~i~~~~~~l~~~~~ 646 (965)
+.....|.++++.+++.+.+...
T Consensus 410 s~~~~~t~e~id~li~~l~~~~~ 432 (452)
T 2dgk_A 410 MCRRGFEMDFAELLLEDYKASLK 432 (452)
T ss_dssp ECCTTCCHHHHHHHHHHHHHHHH
T ss_pred EecCCCCHHHHHHHHHHHHHHHH
Confidence 98888899999999998876543
|
| >1tv8_A MOAA, molybdenum cofactor biosynthesis protein A; TIM barrel, ligand binding protein; HET: SAM; 2.20A {Staphylococcus aureus} SCOP: c.1.28.3 PDB: 1tv7_A* 2fb3_A* 2fb2_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=2.2e-15 Score=166.44 Aligned_cols=198 Identities=19% Similarity=0.312 Sum_probs=154.7
Q ss_pred EeEeeccCCCCCCCCCCCCCCcCC---CCcccccCCCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHH
Q psy8199 683 VLLSIKTGGCTEDCGYCPQSTHYN---TEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEV 759 (965)
Q Consensus 683 ~~i~~~s~~C~~~C~fC~~~~~~~---~~~~~~~~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i 759 (965)
..+++ |++|+++|.||.....+. ........++.+++.+.++.+.+.|++.|.|+||+ |+...+ +.++++.+
T Consensus 16 l~i~~-T~~CNl~C~yC~~~~~~~~~~~~~~~~~~ls~e~i~~~i~~~~~~g~~~i~~tGGE-Pll~~~---l~~li~~~ 90 (340)
T 1tv8_A 16 LRLSV-TDRCNFRCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKVYAELGVKKIRITGGE-PLMRRD---LDVLIAKL 90 (340)
T ss_dssp EEEEC-CSCCSCCCTTTSCTTTSSTTCCCCCGGGSCCHHHHHHHHHHHHHTTCCEEEEESSC-GGGSTT---HHHHHHHH
T ss_pred EEEEe-CCCcCCcCCCCCcCcccCCCcccCCccCCCCHHHHHHHHHHHHHCCCCEEEEeCCC-ccchhh---HHHHHHHH
Confidence 44667 999999999997654111 11123455899999999999999999999998764 544433 56777777
Q ss_pred HhcCc--EeEE-ecCCCCHHHHHHHHHhCCCeEeccCCC-CHHHHhcccCCC-CHHHHHHHHHHHHHcCCceeeeEEEec
Q psy8199 760 KKIGL--ETCL-TLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTR-DYENRLNTLKNVRNVGINICCGGIIGL 834 (965)
Q Consensus 760 ~~~~~--~i~~-~~~~~~~e~l~~Lk~aG~~~i~i~~es-~~~~~~~i~~~~-~~~~~~~~i~~~~~~Gi~v~~~~i~Gl 834 (965)
++.+. .+.+ ++|.+..+.++.|+++|++.+.+++|+ +++.++.+++.. ++++++++++.++++|+++..++++..
T Consensus 91 ~~~~~~~~i~i~TNG~ll~~~~~~L~~~g~~~v~iSld~~~~~~~~~i~~~~~~~~~v~~~i~~l~~~g~~v~i~~vv~~ 170 (340)
T 1tv8_A 91 NQIDGIEDIGLTTNGLLLKKHGQKLYDAGLRRINVSLDAIDDTLFQSINNRNIKATTILEQIDYATSIGLNVKVNVVIQK 170 (340)
T ss_dssp TTCTTCCEEEEEECSTTHHHHHHHHHHHTCCEEEEECCCSSHHHHHHHHSSCCCHHHHHHHHHHHHHTTCEEEEEEEECT
T ss_pred HhCCCCCeEEEEeCccchHHHHHHHHHCCCCEEEEecCCCCHHHHHHhhCCCCCHHHHHHHHHHHHHCCCCEEEEEEEeC
Confidence 76532 3333 445555679999999999999999999 899999999877 999999999999999999988888855
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCC-CCCCCCHHHHHHHHHH
Q psy8199 835 SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLY-GSSILDPLEFIRTIAV 888 (965)
Q Consensus 835 ~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~-~~~~~~~~~~~~~ia~ 888 (965)
+++.+++.+.++++++++ ++ +.+..++|.++++.+ .....+.+++++.+..
T Consensus 171 g~n~~ei~~~~~~~~~~g--~~-~~~i~~~p~~~~~~~~~~~~~~~~e~~~~l~~ 222 (340)
T 1tv8_A 171 GINDDQIIPMLEYFKDKH--IE-IRFIEFMDVGNDNGWDFSKVVTKDEMLTMIEQ 222 (340)
T ss_dssp TTTGGGHHHHHHHHHHTT--CC-EEEEECCCBCSSSSBCCSSCCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcC--Ce-EEEEEeeEcCCCccchhhcCCCHHHHHHHHHh
Confidence 789999999999999998 55 677778999988653 2345677887776653
|
| >3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.1e-15 Score=173.58 Aligned_cols=297 Identities=9% Similarity=-0.012 Sum_probs=185.9
Q ss_pred CCHHHHHHHHHHHhhc---cccccCCCCcHHHHHHHHHHHhhcCCCCCeEEE---cCChhHHHHHHHHHHHHHHHhcCCC
Q psy8199 271 SNSYINKALKNQLNKL---EHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFY---GSDGASAVEVALKMSFHYWYNKGFL 344 (965)
Q Consensus 271 ~~p~v~~av~~~~~~~---~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~---~~sGseA~~~Al~~a~~~~~~~g~~ 344 (965)
++++|++|+.++.... .......+......++++.+++.++ .+...+ ++||++|++.+++... .
T Consensus 36 n~~~vl~A~~~~~~~~~~~~~~~g~~y~~~~~~~l~~~la~~~g--~~~~~~~i~~~sGt~Ai~~al~al~--------~ 105 (431)
T 3ht4_A 36 NQFRVLESFGKHKISDSHFIPTTGYGYDDIGRDTLEKVYADVFG--AEAGLVRPQIISGTHAISTALFGIL--------R 105 (431)
T ss_dssp HHHHHHHHHHHTTCCGGGSCCCCTTCCSCHHHHHHHHHHHHHTT--CSEECCBTTSCSHHHHHHHHHHTTC--------C
T ss_pred HHHHHHHHHHHhchhhhhcCCCCCCCCChhhHHHHHHHHHHHhC--CCcccccceeeCHHHHHHHHHHHhC--------C
Confidence 4678888888753221 1222234566778899999999985 343333 5699999999998653 2
Q ss_pred CceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEE
Q psy8199 345 NKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAA 424 (965)
Q Consensus 345 ~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aa 424 (965)
++++|++.++..|+.+.....+++. ++..+......+.+++.... +. .|+++|+++++ +++++
T Consensus 106 ~Gd~Vl~~~~~~y~~~~~~~~l~g~--~~~~~~~~G~~~~~v~~~~~-~~-----------~d~e~l~~~l~---~~tk~ 168 (431)
T 3ht4_A 106 PGDELLYITGKPYDTLEEIVGVRGK--GVGSFKEYNIGYNAVPLTEG-GL-----------VDFEAVAAAIH---SNTKM 168 (431)
T ss_dssp TTCEEEECSSSCCTTHHHHTTSSSC--SSSCSGGGTCEEEECCBCTT-SS-----------BCHHHHHHHCC---TTEEE
T ss_pred CCCEEEEeCCCCchhHHHHHhhccc--ccchHHHcCCEEEEeCCCCC-CC-----------cCHHHHHhhcC---CCCeE
Confidence 5678999884455555555554442 22233333344555554321 11 37889988885 46788
Q ss_pred EEEccccccCCCcccCChHHHHHHHHHHHh--cCCeEEEeccccCCCcccccccccccCCCccee--eeccccCCCc-cc
Q psy8199 425 IIIEPLVQCAGGMIMYDSIYLKLVREICNN--YNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL--CLSKGITGGY-LP 499 (965)
Q Consensus 425 ii~ep~v~~~~G~~~~~~~~l~~l~~l~~~--~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDiv--t~sK~l~gG~-~p 499 (965)
|++++..+|++|. ..+...+++|.++|++ +|+++|+||+|..+....... .++ .|++ +++|.++||+ .+
T Consensus 169 V~i~~sp~np~~~-~~~~~~l~~i~~la~~~~~~~~livDea~~~~~~~~~~~---~~g--~Di~~~S~sK~lgg~~~~~ 242 (431)
T 3ht4_A 169 IGIQRSKGYATRP-SFTISQIKEMIAFVKEIKPDVVVFVDNCYGEFIEEQEPC---HVG--ADLMAGSLIKNPGGGIVKT 242 (431)
T ss_dssp EEEECSCTTSSSC-CCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTSSSCCGG---GTT--CSEEEEETTSGGGTTTCSS
T ss_pred EEEECCCCCCCCC-cCCHHHHHHHHHHHHhhCCCCEEEEeCCChhhccCCCcc---ccC--CeEEEcCccccCCCCCCCc
Confidence 8888315666665 4477889999999999 999999999998775433322 123 4655 6899998853 34
Q ss_pred ceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHccc-C-CCceeee
Q psy8199 500 LSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLI-T-HPKIINF 577 (965)
Q Consensus 500 ig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~-~-~~~i~~v 577 (965)
.|++++++++++.+.... .....+.+.+.++..+++++..|+.+ +...++..++.+++.+.|+++. + .|. ...
T Consensus 243 GG~v~~~~~li~~l~~~~--~~~~~g~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~a~~l~~~L~~~g~~v~p~-~~~ 317 (431)
T 3ht4_A 243 GGYIVGKEQYVEACAYRL--TSPGIGAEAGASLYSLQEMYQGFFLA--PHVAGQALKGAIFTAAFLEKLGMNTSPA-WNA 317 (431)
T ss_dssp CEEEEECHHHHHHHHHHH--SCTTTTTSCSCCCSCSHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTCCEESC-TTS
T ss_pred eEEEEecHHHHHHHHHHh--ccCCcccccCccHHHHHHHHhHhhhH--HHHHHHHHHHHHHHHHHHHhCcCEecCC-CCC
Confidence 578889999888775410 01112222322222234455555544 3456778888888988888762 1 122 234
Q ss_pred eceeEEEEEEEeecCccchhhHHHHHHHHHHHcC
Q psy8199 578 RQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNE 611 (965)
Q Consensus 578 ~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~G 611 (965)
++.++++.+.+. + .....++.+.|.+..
T Consensus 318 ~~~~li~~i~l~--~----~~~~~~~~~~l~~~~ 345 (431)
T 3ht4_A 318 PRTDLIQSVQFD--D----KDRMIAFCQAIQYAS 345 (431)
T ss_dssp CCSSSCCEEECC--C----HHHHHHHHHHHHHTS
T ss_pred CCccEEEEEEeC--C----HHHHHHHHHHHHhcC
Confidence 455668888774 2 223446777777764
|
| >2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9 | Back alignment and structure |
|---|
Probab=99.66 E-value=1.9e-15 Score=174.34 Aligned_cols=334 Identities=11% Similarity=0.047 Sum_probs=195.4
Q ss_pred CCcccccccccchhccCCCCCHHHHHHHHHHHhh-ccc--------cc-cCC-----CCcHHHHHHHHHHHhhcCCCCCe
Q psy8199 252 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNK-LEH--------VM-LSN-----LTHKPVIKLSEKLSSLTQYKLGH 316 (965)
Q Consensus 252 dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~-~~~--------~~-~~~-----~~~~~~~~la~~l~~~~~~~~~~ 316 (965)
+++.|+|..+. |..++.|.+++...... ..+ .+ ... ...+...++.++++++++...+
T Consensus 79 ~~~~yld~aa~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~- 151 (456)
T 2z67_A 79 DTDKDPKSVRI------GEREARTYSKIHEELSSGFCHGIGRSGNLVDPQPKASGASIMYALTNKILESFFKQLGLNVH- 151 (456)
T ss_dssp BGGGCTTCEEC------SSCCCCCSCHHHHHHTTTCTTCBSBTTBTTSCCTTBHHHHHHHHHHHHHHHHHHHHTTCCCE-
T ss_pred ccccccccccc------ccccccccccccCccccccCCCccHHHHHHhhCcccccCcHHHHHHHHHHHHHHHHcCCCCC-
Confidence 45678887654 22566777776653210 000 00 000 0223446788889999875545
Q ss_pred EEEcCChh-HHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCC--CCCC
Q psy8199 317 CFYGSDGA-SAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTP--DSRN 393 (965)
Q Consensus 317 v~~~~sGs-eA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 393 (965)
++|++||| .++..++..++.+. +++.||+.+.. |.+...+....| ..+..++.. +..+
T Consensus 152 ~~~t~g~te~a~~~al~~~~~~~------~~~~vi~~~~~-h~s~~~~~~~~G------------~~~~~v~~~~~~~~~ 212 (456)
T 2z67_A 152 AIATPISTGMSISLCLSAARKKY------GSNVVIYPYAS-HKSPIKAVSFVG------------MNMRLVETVLDGDRV 212 (456)
T ss_dssp EEEESSCHHHHHHHHHHHHHHHH------CCCEEEEECCC-CHHHHHHHHHTT------------CEEEEECCEEETTEE
T ss_pred EEEeCcHHHHHHHHHHHHHHHhc------CCCEEEEECCC-cHHHHHHHHHcC------------CCceEEEEeccCCCC
Confidence 99999999 56776777765531 34567777774 444332222222 122333321 1111
Q ss_pred CCCCCChhHHHHHHHHHHHHHH-HhC-CCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcc
Q psy8199 394 INKGNSANEIARCAIFDLEILL-KKN-HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRT 471 (965)
Q Consensus 394 ~~~~~~~~~~~~~d~~~le~~l-~~~-~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~ 471 (965)
. .|+++|+++| +.. ..++.+|++.. .++++|.+.+ +++|.++|++||+++|+||+|.++..
T Consensus 213 ~-----------~d~~~l~~~i~~~~~~~~~~~vv~~~-~nn~tG~i~~----l~~I~~la~~~g~~v~vD~A~~~~~~- 275 (456)
T 2z67_A 213 Y-----------VPVEDIENAIKKEIELGNRPCVLSTL-TFFPPRNSDD----IVEIAKICENYDIPHIINGAYAIQNN- 275 (456)
T ss_dssp E-----------CCHHHHHHHHHHHHHTTCCEEEEEES-SCCTTBCCCC----HHHHHHHHHHHTCCEEEECTTTTTCH-
T ss_pred C-----------cCHHHHHHHHHHHhhCCCeEEEEEeC-CCCCCCCcCC----HHHHHHHHHHcCCcEEEECcchHHHH-
Confidence 1 3688999988 421 12455554444 4788999887 99999999999999999999876532
Q ss_pred cc-cccccc-cCCCcceeee--ccccCCCcccceeeee-cHHHHHhhhccCCcccccccCCCCCC-HHHHHHHHHHHHHH
Q psy8199 472 GK-FFACEH-AEIWPDFLCL--SKGITGGYLPLSLVMT-TDKIYNSIYYKNNINIFLHSHSYSGN-PLACCAALATLEIF 545 (965)
Q Consensus 472 G~-~~~~~~-~~~~pDivt~--sK~l~gG~~pig~v~~-~~~i~~~~~~~~~~~~~~~~~t~~~~-~~~~aaa~a~L~~~ 545 (965)
|. ...... .+ .+|++++ +|.+.++ +++|++++ ++++++.+.. ...+. ..++ .+++.+++..+...
T Consensus 276 g~~~~~~~~~~~-~~D~~~~s~hK~~~~p-~g~G~l~~~~~~~~~~l~~------~~~g~-~~~~~~~~~~aal~~l~~~ 346 (456)
T 2z67_A 276 YYLEKLKKAFKY-RVDAVVSSSDKNLLTP-IGGGLVYSTDAEFIKEISL------SYPGR-ASATPVVNTLVSLLSMGSK 346 (456)
T ss_dssp HHHHHHHHHHTS-CCSEEEEEHHHHHCCC-SSCEEEEESCHHHHHHHHT------TSCSC-BCSHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHhhCC-CCCEEEEcCCCCcCCC-CCeEEEEEcCHHHHhhcCc------CCCCC-CCCCHHHHHHHHHHHHHHH
Confidence 21 111111 12 6888866 6866555 68999999 5677776643 11222 1222 23333333333211
Q ss_pred hcccHHHHHHHHHHHHHHHHHcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCc---EEe-------
Q psy8199 546 NKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNEL---LLR------- 615 (965)
Q Consensus 546 ~~~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi---~~~------- 615 (965)
.-++..++..++.+++.+.|+++...+++..+.+. .++.+.+. .+. ....+.+.|.++|+ -+.
T Consensus 347 ~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~v~~~~-~~v~~~~~-~~~-----~~~~l~~~L~~~gi~~~rv~~~~g~f~ 419 (456)
T 2z67_A 347 NYLELVKNQKNSKKLLDELLNDLSKKTGGKFLDVE-SPIASCIS-VNS-----DPVEIAAKLYNLRVTGPRGIKKTDHFG 419 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSCCBCCCC-CSSEEEEE-CSS-----CHHHHHHHHHHTTEESCEEECTTCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccCCEecCCC-CeEEEEEe-ccc-----HHHHHHHHHHHcCCCcceEEeecCccc
Confidence 11345778888889999988876310122222233 44555552 110 13457788888885 232
Q ss_pred -----e-cCCEEEEeCCcccCHHHHHHHHHhhhcc
Q psy8199 616 -----P-IGNTVYLMPPYILNKNEIQHMTSAIFQT 644 (965)
Q Consensus 616 -----~-~~~~lR~~p~~~~t~~~i~~~~~~l~~~ 644 (965)
. ..+.+|++.++..++++++++++++.+.
T Consensus 420 G~~~~~~~~~~vr~s~~~~~t~eeid~~l~~L~~~ 454 (456)
T 2z67_A 420 NCYLGTYTHDYIVMNAAIGVRTEDIVNSVSKLEKI 454 (456)
T ss_dssp HTCSSCCSCCEEEEECCTTCCHHHHHHHHHHHHTC
T ss_pred cccccccCcchhhhhhhcCCCHHHHHHHHHHHHHH
Confidence 1 1368999998889999999999998764
|
| >2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.8e-16 Score=181.90 Aligned_cols=283 Identities=10% Similarity=0.026 Sum_probs=175.2
Q ss_pred CcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccc
Q psy8199 295 THKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKE 374 (965)
Q Consensus 295 ~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~ 374 (965)
+.....++.+.+++ ++.. +.+++++||++|+..+++++. .++++|++.+++|++........+..
T Consensus 55 ~~~~~~~~~~~la~-~g~~-~~v~~~~G~t~a~~~~~~a~~--------~~gd~Vlv~~~~h~s~~~~~~~~G~~----- 119 (446)
T 2x3l_A 55 PEEVILKSMKQVEK-HSDY-DGYFLVNGTTSGILSVIQSFS--------QKKGDILMARNVHKSVLHALDISQQE----- 119 (446)
T ss_dssp CSSHHHHHHHHHCS-CTTE-EEEEESSHHHHHHHHHHHTTT--------TSSSCEEECTTCCHHHHHHHHHHTCC-----
T ss_pred cchHHHHHHHHHHh-cCCC-ceEEEeCCHHHHHHHHHHHhc--------CCCCEEEEecCccHHHHHHHHHcCCe-----
Confidence 44566788888888 8643 578899999999999999773 25688999999887764433332221
Q ss_pred hhcccCCCeeEecC--CCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHH
Q psy8199 375 IYTSLLNKTYIITT--PDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREIC 452 (965)
Q Consensus 375 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~ 452 (965)
.++++. ....+...+ .|+++| + .+++++|++.+ .+++|.+.+ +++|.++|
T Consensus 120 --------~~~v~~~~~~~~~~~~~--------~d~~~l---~---~~~~~~v~~~~--~n~~G~~~~----l~~I~~l~ 171 (446)
T 2x3l_A 120 --------GHFIETHQSPLTNHYNK--------VNLSRL---N---NDGHKLVVLTY--PNYYGETFN----VEEVIKSL 171 (446)
T ss_dssp --------EEECEEEECTTTSSEEE--------EEC-------------CCEEEEES--SCTTSCCCC----HHHHHHHH
T ss_pred --------EEEEeCeeccccCcCCC--------CCHHHH---c---CCCceEEEEEC--CCCCeEecC----HHHHHHHH
Confidence 122221 110000000 123344 2 23456666666 345888876 89999999
Q ss_pred HhcCCeEEEeccccC-CCcccccccccccCCCcceeeec--cccCCCcccceeeeecHHHHH--hhhccCCcccccccCC
Q psy8199 453 NNYNIHLIADEIAVG-CGRTGKFFACEHAEIWPDFLCLS--KGITGGYLPLSLVMTTDKIYN--SIYYKNNINIFLHSHS 527 (965)
Q Consensus 453 ~~~g~llI~DEv~tg-~gr~G~~~~~~~~~~~pDivt~s--K~l~gG~~pig~v~~~~~i~~--~~~~~~~~~~~~~~~t 527 (965)
++||+++|+||+|++ +...+..+. .....+|++++| |.++|+ .++|++++++++++ .+... .....+
T Consensus 172 ~~~~~~livDea~~~~~~f~~~~~~--~~~~g~Di~~~S~~K~l~~~-~g~g~l~~~~~~i~~~~~~~~-----~~~~~~ 243 (446)
T 2x3l_A 172 HQLNIPVLIDEAHGAHFGLQGFPDS--TLNYQADYVVQSFHKTLPAL-TMGSVLYIHKNAPYRENIIEY-----LSYFQT 243 (446)
T ss_dssp HHTTCCEEEECTTCTTTTSTTSCCC--GGGGTCSEEEECHHHHSSSC-TTCEEEEEETTCTTHHHHHHH-----HHHHSC
T ss_pred HhcCCeEEEcchhhhhhccCCCCCC--hHHcCCCEEEECCccccccc-cccEEEEEcCCcCCHHHHHHH-----HHHHcC
Confidence 999999999999986 222222122 222347888765 988776 57899999887654 22210 111233
Q ss_pred CCCCHHHHHHHHHHHHHHhcc--c-HHHHHHHHHHHHHHHHHcccCCCceeeeec-eeEEEEEEEeecCccchhhHHHHH
Q psy8199 528 YSGNPLACCAALATLEIFNKD--N-ILQRISQDMKKITKALTSLITHPKIINFRQ-KGMIWAFDVIIEDPEQIETFSKKF 603 (965)
Q Consensus 528 ~~~~~~~~aaa~a~L~~~~~~--~-~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g-~G~~~~i~~~~~~~~~~~~~~~~~ 603 (965)
.+.+...+++..++++.+... + +.++.+++.+++++. ++..+.. .+..+.+.+. . .....+
T Consensus 244 ~s~~~~~~aal~~a~~~l~~~g~~~~~~~~~~l~~~l~~~--------g~~~~~~~~~~~l~i~~~--~-----~~~~~l 308 (446)
T 2x3l_A 244 SSPSYLIMASLESAAQFYKTYDSTLFFAKRAQLIECLENK--------GFEMLQVDDPLKLLIKYE--G-----FTGHDI 308 (446)
T ss_dssp SSCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH--------TCEEEECSSTTEEEEECT--T-----SCHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHc--------CCEECcCCCCeEEEEEeC--C-----cCHHHH
Confidence 445677777766777776642 2 667777777777665 1222211 2334444432 1 113457
Q ss_pred HHHHHHcCcEEe-ecCCEEEEeCCcccCHHHHHHHHHhhhcc
Q psy8199 604 FVAALKNELLLR-PIGNTVYLMPPYILNKNEIQHMTSAIFQT 644 (965)
Q Consensus 604 ~~~l~~~Gi~~~-~~~~~lR~~p~~~~t~~~i~~~~~~l~~~ 644 (965)
.+.|.++||.+. ++.+++|++++...+++++ ++++++.+.
T Consensus 309 ~~~L~~~GI~v~~~g~~~iRi~~~~~~t~e~i-~l~~aL~~~ 349 (446)
T 2x3l_A 309 QNWFMNAHIYLELADDYQALAILPLWHHDDTY-LFDSLLRKI 349 (446)
T ss_dssp HHHHHHTTEEESEECSSCEEEECCCCCTTCCC-CHHHHHHHH
T ss_pred HHHHHHCCCEEEecCCCEEEEEeecCCCHHHH-HHHHHHHHH
Confidence 788888999998 5557999999988899888 888877654
|
| >4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.65 E-value=4.5e-15 Score=167.33 Aligned_cols=354 Identities=10% Similarity=-0.013 Sum_probs=204.6
Q ss_pred cCCcccccccccchhccCCCCC--HHHHHHHHHHHhhc-cc-cccCCCCcHHHHHHHHHHHhhc-CCCCCeEEEcCChhH
Q psy8199 251 FSGKRYLDAISSWWVNLFGHSN--SYINKALKNQLNKL-EH-VMLSNLTHKPVIKLSEKLSSLT-QYKLGHCFYGSDGAS 325 (965)
Q Consensus 251 ~dG~~ylD~~~~~~~~~lGh~~--p~v~~av~~~~~~~-~~-~~~~~~~~~~~~~la~~l~~~~-~~~~~~v~~~~sGse 325 (965)
.|++.-+|+.-|.+-..-|..+ |.|.+|.+..++.. ++ |....+..+.+..+++.+.... +.+.....-+.|||.
T Consensus 41 ~d~~~kinLgvG~y~d~~g~~~vl~~Vk~A~~~~~~~~~~~~Y~p~~G~p~lr~aia~~~~g~~~~~~~~~~~qt~ggtg 120 (420)
T 4h51_A 41 AAKGPKANLVIGAYRDEQGRPYPLRVVRKAEQLLLDMNLDYEYLPISGYQPFIDEAVKIIYGNTVELENLVAVQTLSGTG 120 (420)
T ss_dssp HCCSSCEECCSCCCBCTTSCBCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHC---CGGGEEEEEEEHHHH
T ss_pred cCCCCCEEeecCcccCCCCCCCCCHHHHHHHHHHhcCCCCCCCCCcCChHHHHHHHHHHhcCCCccccccceeeecCchH
Confidence 3445578887776556666543 77888876666543 33 4444555556666655543221 111123445899999
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHH
Q psy8199 326 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIAR 405 (965)
Q Consensus 326 A~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (965)
|...++..+.... ..+++.|++.+++|..+.......++.. +...+....... .
T Consensus 121 a~~~a~~~l~~~~----~~pgd~V~ip~P~w~~y~~i~~~aG~~~------------V~~~~~~~~~~~----------~ 174 (420)
T 4h51_A 121 AVSLGAKLLTRVF----DAETTPIYLSDPTWPNHYGVVKAAGWKN------------ICTYAYYDPKTV----------S 174 (420)
T ss_dssp HHHHHHHHHTTTS----CTTTSCEEEEESCCTHHHHHHHHTTCCC------------EEEEECEEGGGT----------E
T ss_pred HHHHHHHHHHHhc----CCCCCEEEEecCCchhHHHHHHHcCCeE------------EEeecccccccc----------C
Confidence 9988887664421 1356889999999977643333333211 111111100000 0
Q ss_pred HHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccc---cccccc-cC
Q psy8199 406 CAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK---FFACEH-AE 481 (965)
Q Consensus 406 ~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~---~~~~~~-~~ 481 (965)
.|.+.+.+.+...+++..++++.+ .+|++|... +.+.+++|.++|+++++++|+||+|.||...+. .+.... .+
T Consensus 175 ~d~~~~~~~l~~~~~~~~vll~~~-p~NPtG~~~-~~~~~~~i~~~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~~~~~~ 252 (420)
T 4h51_A 175 LNFEGMKKDILAAPDGSVFILHQC-AHNPTGVDP-SQEQWNEIASLMLAKHHQVFFDSAYQGYASGSLDTDAYAARLFAR 252 (420)
T ss_dssp ECHHHHHHHHHHSCSSCEEEEESS-SCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHH
T ss_pred CCHHHHHHHHhccCCCcEEEEeCC-CCCCCCCCC-CHHHHHHHHHHHHhcCceEeeehhhhhhccCCcccchHHHHhHHh
Confidence 245666666766666777788877 799999765 888899999999999999999999999964332 111111 12
Q ss_pred CCccee---eeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCC-CCHHHHHHHHHHHHH--H----h--ccc
Q psy8199 482 IWPDFL---CLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYS-GNPLACCAALATLEI--F----N--KDN 549 (965)
Q Consensus 482 ~~pDiv---t~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~-~~~~~~aaa~a~L~~--~----~--~~~ 549 (965)
..+.++ +|||.++--+|++|++++..+..+....-...-.....++++ .+..++.++...|.- + + -+.
T Consensus 253 ~~~~~i~~~s~SK~~~~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~r~~~s~~p~~~a~~~~~~l~d~~l~~~~~~~~~~ 332 (420)
T 4h51_A 253 RGIEVLLAQSFSKNMGLYSERAGTLSLLLKDKTKRADVKSVMDSLIREEYTCPPAHGARLAHLILSNNELRKEWEAELSA 332 (420)
T ss_dssp TTCCCEEEEECTTTSCCGGGCEEEEEEECSCHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHH
T ss_pred hCceEEEEeccccccccccCceEEEEecccCHHHHHHHHHHHHHhhhcccCcchHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 223343 689966542299999887543332221100000011223333 445566666665531 1 0 123
Q ss_pred HHHHHHHHHHHHHHHHHcccCCCceee-eeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecCCEEEEeCCcc
Q psy8199 550 ILQRISQDMKKITKALTSLITHPKIIN-FRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIGNTVYLMPPYI 628 (965)
Q Consensus 550 ~~~~~~~~~~~l~~~L~~l~~~~~i~~-v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~lR~~p~~~ 628 (965)
..++++++++.|.+.|+++.....+.. .+..|+|...-+. . +..+.|.++||++.++| ||+.+ .
T Consensus 333 m~~r~~~~R~~l~~~L~~~g~~~~~~~i~~q~GmF~~~gls-------~----e~v~~L~e~~Vy~~~~g---Ris~A-g 397 (420)
T 4h51_A 333 MAERIRTMRRTVYDELLRLQTPGSWEHVINQIGMFSFLGLS-------K----AQCEYCQNHNIFITVSG---RANMA-G 397 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSSCCTHHHHCCSSEEECCCC-------H----HHHHHHHHTTEECCTTC---EEEGG-G
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCeecCCCceEEecCcC-------H----HHHHHHHhCCEEEcCCC---EEEec-c
Confidence 456666777777777766521111222 2345655433221 1 23467789999988865 88742 4
Q ss_pred cCHHHHHHHHHhhhccccc
Q psy8199 629 LNKNEIQHMTSAIFQTFNE 647 (965)
Q Consensus 629 ~t~~~i~~~~~~l~~~~~~ 647 (965)
.+++.++.+.+++.+++.+
T Consensus 398 l~~~ni~~~a~aI~~vvr~ 416 (420)
T 4h51_A 398 LTHETALMLAQTINDAVRN 416 (420)
T ss_dssp CCHHHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 6899999999988776544
|
| >2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.4e-15 Score=172.26 Aligned_cols=292 Identities=11% Similarity=0.077 Sum_probs=185.7
Q ss_pred cCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCc
Q psy8199 291 LSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQ 370 (965)
Q Consensus 291 ~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~ 370 (965)
...+.++...+++++++++.+ .+.+++++||++|+..+++... .++++||+.++.|++.... +.
T Consensus 76 y~r~~~p~~~~le~~lA~l~g--~~~~i~~ssGt~Ai~~al~~l~--------~~Gd~Vi~~~~~y~~~~~~-~~----- 139 (415)
T 2fq6_A 76 YGRRGTLTHFSLQQAMCELEG--GAGCVLFPCGAAAVANSILAFI--------EQGDHVLMTNTAYEPSQDF-CS----- 139 (415)
T ss_dssp CTTTCCHHHHHHHHHHHHHHT--CSEEEEESSHHHHHHHHHHTTC--------CTTCEEEEETTSCHHHHHH-HH-----
T ss_pred ccCCCCchHHHHHHHHHHHhC--CCeEEEeCCHHHHHHHHHHHHh--------CCCCEEEEeCCCchHHHHH-HH-----
Confidence 355678889999999999985 4577788999999999988542 2568899999998875211 10
Q ss_pred CccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHH
Q psy8199 371 SFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVRE 450 (965)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~ 450 (965)
.........+.+++. .|+++|+++++ +++++|++|. ++|++|.+.+ +++|.+
T Consensus 140 ---~~l~~~G~~v~~v~~-----------------~d~~~le~ai~---~~tklV~~e~-~~NptG~v~d----l~~I~~ 191 (415)
T 2fq6_A 140 ---KILSKLGVTTSWFDP-----------------LIGADIVKHLQ---PNTKIVFLES-PGSITMEVHD----VPAIVA 191 (415)
T ss_dssp ---HTGGGGTCEEEEECT-----------------TCGGGGGGGCC---TTEEEEEEES-SCTTTCCCCC----HHHHHH
T ss_pred ---HHHHHcCcEEEEECC-----------------CCHHHHHHhhc---cCCcEEEEEC-CCCCCCEeec----HHHHHH
Confidence 000111123344432 25677877774 4578899998 8999999887 999999
Q ss_pred HHHh--cCCeEEEeccccCCCcccccccccccCCCccee--eeccccCCCcc-cceeeeecHHHHHhhhccCCccccccc
Q psy8199 451 ICNN--YNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL--CLSKGITGGYL-PLSLVMTTDKIYNSIYYKNNINIFLHS 525 (965)
Q Consensus 451 l~~~--~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDiv--t~sK~l~gG~~-pig~v~~~~~i~~~~~~~~~~~~~~~~ 525 (965)
+|++ ||+++|+|++|... ..+... ....|++ +++|.++++.. ..|++++++++++.+.... ...+
T Consensus 192 la~~~~~g~~livD~a~a~~-~~~~p~-----~~g~Div~~S~sK~lg~~g~~~~G~l~~~~~~~~~l~~~~----~~~G 261 (415)
T 2fq6_A 192 AVRSVVPDAIIMIDNTWAAG-VLFKAL-----DFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENA----YLMG 261 (415)
T ss_dssp HHHHHCTTCEEEEECTTTTT-TSSCGG-----GGTCSEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHH----HHTT
T ss_pred HHHhhcCCCEEEEECCCccc-ccCCcc-----ccCCeEEEEeCccccCCCCCceEEEEEeCHHHHHHHHHHH----HhcC
Confidence 9999 99999999998632 111111 2346887 56899887433 3588888888777665410 0112
Q ss_pred CCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHccc-----CCCceee----------eeceeEEEEEEEee
Q psy8199 526 HSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLI-----THPKIIN----------FRQKGMIWAFDVII 590 (965)
Q Consensus 526 ~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~-----~~~~i~~----------v~g~G~~~~i~~~~ 590 (965)
...+|..++.++..++.+.. ..++..++.+.+.+.|++.. .+|++.. .++.|.++.|.+.
T Consensus 262 --~~~~~~~a~~~~~~l~~l~~--r~~~~~~n~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~~~g~i~sf~l~- 336 (415)
T 2fq6_A 262 --QMVDADTAYITSRGLRTLGV--RLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLK- 336 (415)
T ss_dssp --CCCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEES-
T ss_pred --CCCCHHHHHHHHhhhhHHHH--HHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEC-
Confidence 23467777777777765532 34555666777777776531 1232211 1246788888885
Q ss_pred cCccchhhHHHHHHHHHHHcCc----------EEe--e--------------cCCEEEEeCCcccCHHHHHHHHHhhhc
Q psy8199 591 EDPEQIETFSKKFFVAALKNEL----------LLR--P--------------IGNTVYLMPPYILNKNEIQHMTSAIFQ 643 (965)
Q Consensus 591 ~~~~~~~~~~~~~~~~l~~~Gi----------~~~--~--------------~~~~lR~~p~~~~t~~~i~~~~~~l~~ 643 (965)
+. .. ......+.+.+...++ ... | .++.+||+..+..++++++.+.+++..
T Consensus 337 g~-~~-~~~~~~~l~~l~~~~~a~s~G~~~s~~~~~~p~~~s~~~~~~~~g~~~~~iRlS~G~e~~~d~i~~l~~al~~ 413 (415)
T 2fq6_A 337 KK-LN-NEELANYLDNFSLFSMAYSWGGYESLILANQPEHIAAIRPQGEIDFSGTLIRLHIGLEDVDDLIADLDAGFAR 413 (415)
T ss_dssp SC-CC-HHHHHHHHTTCSSCEECSCCCSSSCEEEEECHHHHHTTCTTCCCCCCSCEEEEECCSSCHHHHHHHHHHHHHT
T ss_pred CC-CC-HHHHHHHHHhCCcCeEeccCCCCceeEEecCCCccccccchhhcCCCCCEEEEEecCCCHHHHHHHHHHHHHh
Confidence 11 00 1112333333321121 111 1 136899999999999989888887754
|
| >3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=99.63 E-value=6.1e-15 Score=167.42 Aligned_cols=258 Identities=14% Similarity=0.109 Sum_probs=162.0
Q ss_pred CCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcC
Q psy8199 292 SNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQS 371 (965)
Q Consensus 292 ~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~ 371 (965)
..+.++...+|+++++++.+ .+.+++++||++|+..+++.+. .++++|++.++.|++......
T Consensus 77 ~r~~~p~~~~le~~lA~l~g--~~~~v~~~sG~~Ai~~al~al~--------~~Gd~Vi~~~~~y~~~~~~~~------- 139 (430)
T 3ri6_A 77 SRSSNPTVEDLEQRLKNLTG--ALGVLALGSGMAAISTAILTLA--------RAGDSVVTTDRLFGHTLSLFQ------- 139 (430)
T ss_dssp ---CCHHHHHHHHHHHHHHT--CSEEEEESCHHHHHHHHHHHHC--------CTTCEEEEETTCCHHHHHHHH-------
T ss_pred cCCCCHHHHHHHHHHHHHHC--CCcEEEECCHHHHHHHHHHHHh--------CCCCEEEEcCCCchhHHHHHH-------
Confidence 45678889999999999985 4668888899999999998763 367889999999987632110
Q ss_pred ccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHH
Q psy8199 372 FKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREI 451 (965)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l 451 (965)
.........+.+++. .|+++|+++++ +++++|++|+ ++|++|.+.+ +++|.++
T Consensus 140 --~~~~~~G~~~~~v~~-----------------~d~~~l~~ai~---~~t~~v~~e~-p~NptG~~~d----l~~i~~l 192 (430)
T 3ri6_A 140 --KTLPSFGIEVRFVDV-----------------MDSLAVEHACD---ETTKLLFLET-ISNPQLQVAD----LEALSKV 192 (430)
T ss_dssp --THHHHTTCEEEEECT-----------------TCHHHHHHHCC---TTEEEEEEES-SCTTTCCCCC----HHHHHHH
T ss_pred --HHHHHcCCEEEEeCC-----------------CCHHHHHHhhC---CCCeEEEEEC-CCCCCCeecC----HHHHHHH
Confidence 011111223445443 26788888874 4688999998 8999999887 8999999
Q ss_pred HHhcCCeEEEeccccCCCcccccccccccCCCcceeeeccccCCCcccceeeee---cHHH------------------H
Q psy8199 452 CNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMT---TDKI------------------Y 510 (965)
Q Consensus 452 ~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~sK~l~gG~~pig~v~~---~~~i------------------~ 510 (965)
|++||+++|+||+++ . +.......+|....+.+++|.++|+...+|.++. +..+ +
T Consensus 193 a~~~g~~livD~a~~-~---~~~~~~~~~g~div~~S~sK~l~g~g~~~gG~vv~~~~~~~~~~~~~~~l~~~~g~~~~i 268 (430)
T 3ri6_A 193 VHAKGIPLVVDTTMT-P---PYLLEAKRLGVDIEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAGPMAFL 268 (430)
T ss_dssp HHTTTCCEEEECTTS-C---TTTCCGGGGTCSEEEEECCCEEETTEEECCEEEEECSCSCGGGSTTTHHHHHHHGGGHHH
T ss_pred HHHcCCEEEEECCCc-c---cccCChHHcCCEEEEECCcccccCCCCceEEEEEECChHHhhhccchhhhhhhhchhhHH
Confidence 999999999999986 2 2222222344433334678999874234555444 2111 1
Q ss_pred HhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcccCCCceeeee------------
Q psy8199 511 NSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFR------------ 578 (965)
Q Consensus 511 ~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~------------ 578 (965)
+..... .........+|..++.++..++.+.. ..++..++.+++.+.|++. |.+..|.
T Consensus 269 ~~~~~~-----~~~~~g~~~~~~~a~l~l~~l~~l~~--r~~~~~~na~~la~~L~~~---p~v~~V~~P~l~~~p~~~~ 338 (430)
T 3ri6_A 269 YKARKE-----VFQNLGPSLSPHNAYLQSLGLETMAL--RIERSCQNAQELAHWLLSI---PQVKCVNHPSLPDSPFYAI 338 (430)
T ss_dssp HHHHHT-----HHHHHCCCCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTTC---TTCEEEECTTSTTSTTHHH
T ss_pred HHHHHH-----HHHhcCCCCCHHHHHHHHhhhhhHHH--HHHHHHHHHHHHHHHHhCC---CCccEEECCCCCCCccHHH
Confidence 111110 00111223467877777777776542 3456667777777777543 4444332
Q ss_pred -----ceeE-EEEEEEeecCccchhhHHHHHHHHHHHcCcE
Q psy8199 579 -----QKGM-IWAFDVIIEDPEQIETFSKKFFVAALKNELL 613 (965)
Q Consensus 579 -----g~G~-~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~ 613 (965)
|.|. |++|++. + ...+.+|.+.+.-.++.
T Consensus 339 ~~~~~g~Gg~~lsf~l~--~----~~~~~~~~~~l~~~~~~ 373 (430)
T 3ri6_A 339 AKRQFRYAGSILTFELE--S----KEASYRFMDALKLIRRA 373 (430)
T ss_dssp HHHHCSSCCSEEEEECS--S----HHHHHHHHHHCSSSEEC
T ss_pred HHHhCCCCceEEEEEEC--C----HHHHHHHHHhCCcceec
Confidence 3477 9999885 2 22344565655544443
|
| >2yx0_A Radical SAM enzyme; predicted tRNA modification enzyme, metal binding protein, structural genomics, NPPSFA; 2.21A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.63 E-value=6.2e-15 Score=162.78 Aligned_cols=203 Identities=12% Similarity=0.118 Sum_probs=156.9
Q ss_pred CCCCCCCCCCCCCCcCCC-CcccccCCCHHHHHHHHHHHHHC--------------------CCCEEEEeeccCCCCccc
Q psy8199 690 GGCTEDCGYCPQSTHYNT-EITATKILSIESVITAAQKAKSD--------------------GATRFCMGAAWRELKDRD 748 (965)
Q Consensus 690 ~~C~~~C~fC~~~~~~~~-~~~~~~~~~~eei~~~~~~~~~~--------------------g~~~i~l~~g~~~~~~~~ 748 (965)
++|+++|.||..+..... .....+.+++++|++++....+. .++.+.|++|+.|+...
T Consensus 79 ~gCnl~C~fC~~~~~~~~~~~~~~~~~~~eei~~~i~~~~~~~~~~~~g~~~v~~~~~~e~~~~~~v~~sggGEPll~~- 157 (342)
T 2yx0_A 79 AWCTHNCIFCWRPMENFLGTELPQPWDDPAFIVEESIKAQRKLLIGYKGNPKVDKKKFEEAWNPTHAAISLSGEPMLYP- 157 (342)
T ss_dssp SCCSBCCTTCCCSSSSCSCSSCCSSCCCHHHHHHHHHHHHHHHHTTCC--CCSCHHHHHHHTSCCEEEECSSSCGGGST-
T ss_pred hhhhCcCcccCCCCCCCcccccccCcCCHHHHHHHHHHHHHHHhhccCCCcccchhhhhhccCCCEEEEcCCCcccchh-
Confidence 799999999987542111 11134568999999888765331 25678897566675542
Q ss_pred HHHHHHHHHHHHhcCcEeEE-ecCCCCHHHHHHHHHhC--CCeEeccCCC-CHHHHhcccC---CCCHHHHHHHHHHHHH
Q psy8199 749 LDNIENMICEVKKIGLETCL-TLGMLNENQAYRLKKVG--LDYYNHNLDT-SPKLYGDIIS---TRDYENRLNTLKNVRN 821 (965)
Q Consensus 749 ~~~~~~~~~~i~~~~~~i~~-~~~~~~~e~l~~Lk~aG--~~~i~i~~es-~~~~~~~i~~---~~~~~~~~~~i~~~~~ 821 (965)
.+.++++.+++.++.+.+ ++|.+ ++.++.|+++| ++.+.+++++ +++.++++++ ..++++.+++++.+++
T Consensus 158 --~l~~ll~~~~~~g~~i~l~TNG~~-~e~l~~L~~~g~~~~~l~isld~~~~e~~~~i~~~~~~~~~~~~~~~i~~l~~ 234 (342)
T 2yx0_A 158 --YMGDLVEEFHKRGFTTFIVTNGTI-PERLEEMIKEDKLPTQLYVSITAPDIETYNSVNIPMIPDGWERILRFLELMRD 234 (342)
T ss_dssp --THHHHHHHHHHTTCEEEEEECSCC-HHHHHHHHHTTCCCSEEEEEECCSSHHHHHHHHCBSSSCHHHHHHHHHHHHTT
T ss_pred --hHHHHHHHHHHCCCcEEEEcCCCc-HHHHHHHHhcCCCCCEEEEEccCCCHHHHHHHhCCCcccHHHHHHHHHHHHHh
Confidence 577777777777777666 45555 88899999998 9999999999 8999999987 4579999999999999
Q ss_pred cCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccccccCC--CCCCCCCCCCHHHHHHHHHHHHHHCCCCce
Q psy8199 822 VGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKG--TPLYGSSILDPLEFIRTIAVARITMPTSRI 898 (965)
Q Consensus 822 ~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~g--T~l~~~~~~~~~~~~~~ia~~R~~lp~~~i 898 (965)
.|+++...+++..|++.+++.+.++++++++ ++.+.+.+|.|.++ +++....+++.+++.+....++..+|...|
T Consensus 235 ~g~~v~i~~~l~~g~n~~~~~~l~~~l~~~~--~~~i~l~~~~~~~~~~~~l~~~~~~~~e~~~~~~~~l~~~l~~~~I 311 (342)
T 2yx0_A 235 LPTRTVVRLTLVKGENMHSPEKYAKLILKAR--PMFVEAKAYMFVGYSRNRLTINNMPSHQDIREFAEALVKHLPGYHI 311 (342)
T ss_dssp CSSEEEEEEEECTTTTCCCHHHHHHHHHHHC--CSEEEEEECC------CCCCGGGSCCHHHHHHHHHHHHTTCTTEEE
T ss_pred CCCCEEEEEEEECCccHHHHHHHHHHHHHcC--CCEEEEEeeeecCCCcccccccCCCCHHHHHHHHHHHHHhccCCce
Confidence 9999998888866788888999999999999 89888888887654 455445577899999999999998877555
|
| >3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.3e-14 Score=169.11 Aligned_cols=352 Identities=9% Similarity=-0.010 Sum_probs=201.1
Q ss_pred cCCcccccccccchhccCCCCCHHHHHHHHHHHhhccc-cccCCCCcHHHHHHHHHHHhhcCCC--CC---eEEEcCChh
Q psy8199 251 FSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEH-VMLSNLTHKPVIKLSEKLSSLTQYK--LG---HCFYGSDGA 324 (965)
Q Consensus 251 ~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~-~~~~~~~~~~~~~la~~l~~~~~~~--~~---~v~~~~sGs 324 (965)
.+|+..+.+.+- .-...+|.+.+++.+.++.... ........+...++.++++++++.. .+ ...+++||+
T Consensus 52 l~gnp~~~l~s~----~t~~~~~~v~~~l~~~~~~~~~~~~~~p~~~~le~~~~~~la~l~g~~~~~~~~~~g~~t~ggt 127 (502)
T 3hbx_A 52 LDGNPRLNLASF----VTTWMEPECDKLIMSSINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGSS 127 (502)
T ss_dssp GSCCGGGBTTCC----SCCCCCHHHHHHHHHTTTCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCCCSSCCCEEEEESSHH
T ss_pred cCCCCCceeccc----cCCCCCHHHHHHHHHHhccCCCChhcChhHHHHHHHHHHHHHHHhCCCcccccCCcceecCcHH
Confidence 456655554321 0123589999999887765311 1111112334456777888888654 23 345699999
Q ss_pred HHHHHHHHHHHHHHHh----cCCC-CceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCC
Q psy8199 325 SAVEVALKMSFHYWYN----KGFL-NKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNS 399 (965)
Q Consensus 325 eA~~~Al~~a~~~~~~----~g~~-~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (965)
+|+..++.+++..+.. .|.. .+..|++.+.+|..+...+ ... ..++..+|.....+.
T Consensus 128 ea~~~a~~a~~~~~~~~~~~~G~~~~~~~vi~~~~~h~s~~~~~-~~~------------G~~~~~v~~~~~~~~----- 189 (502)
T 3hbx_A 128 EAIMLAGLAFKRKWQNKRKAEGKPVDKPNIVTGANVQVCWEKFA-RYF------------EVELKEVKLSEGYYV----- 189 (502)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEEETTCCHHHHHHH-HHT------------TCEEEEECCBTTBCS-----
T ss_pred HHHHHHHHHHHHHHhHHHHhcCCCCCCcEEEEcCCchHHHHHHH-HHc------------CceeEEEecCCCcCc-----
Confidence 9999999877654321 1321 2236777766654332211 111 123455554322122
Q ss_pred hhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhc------CCeEEEeccccCCCc--c
Q psy8199 400 ANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNY------NIHLIADEIAVGCGR--T 471 (965)
Q Consensus 400 ~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~------g~llI~DEv~tg~gr--~ 471 (965)
.|+++|++++.+ ++.+|++.. +++++|.+.+ +++|.++|+++ |+++|+|++|.|+.. .
T Consensus 190 ------~d~~~l~~~i~~---~t~~v~~~~-~~n~tG~~~~----l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~ 255 (502)
T 3hbx_A 190 ------MDPQQAVDMVDE---NTICVAAIL-GSTLNGEFED----VKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFL 255 (502)
T ss_dssp ------CCHHHHHHHCCT---TEEEEEEEB-SCTTTCCBCC----HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHH
T ss_pred ------CCHHHHHHHHhh---CCEEEEEec-CCCCCCcccC----HHHHHHHHHHhhhccCCCCeEEEECCccchhhhhh
Confidence 278899888853 455565554 5888999887 99999999999 999999999986531 0
Q ss_pred cccccccccCCCcceeee--ccccCCCcccceeeeec-HHHH-HhhhccCCc-ccccccCC--CCCCHHHHHHHHHHHHH
Q psy8199 472 GKFFACEHAEIWPDFLCL--SKGITGGYLPLSLVMTT-DKIY-NSIYYKNNI-NIFLHSHS--YSGNPLACCAALATLEI 544 (965)
Q Consensus 472 G~~~~~~~~~~~pDivt~--sK~l~gG~~pig~v~~~-~~i~-~~~~~~~~~-~~~~~~~t--~~~~~~~~aaa~a~L~~ 544 (965)
.............|.+++ .|.+.++ ..+|+++.+ ++.+ +.+...... .......+ ++-+....++..++|+.
T Consensus 256 ~~~~~~~~~~~~~D~v~~s~hK~l~~p-~g~G~~~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~a~~~al~~ 334 (502)
T 3hbx_A 256 YPELEWDFRLPLVKSINVSGHKYGLVY-AGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIR 334 (502)
T ss_dssp CTTCCCSTTSTTEEEEEEETTTTTCCC-SSCEEEEESSGGGSCGGGCEEECSSSSCEEECCSCCSCBSHHHHHHHHHHHH
T ss_pred CcccccccCCCCceEEEECcccccCCC-CCeEEEEEeCHHHhhHHhccCcccccCCCCCccccCCchHHHHHHHHHHHHH
Confidence 111111111113577654 4655444 578877765 3433 222110000 00000011 22222233444445554
Q ss_pred Hhc---ccHHHHHHHHHHHHHHHHHcccCCCceeeeec--eeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEee---
Q psy8199 545 FNK---DNILQRISQDMKKITKALTSLITHPKIINFRQ--KGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRP--- 616 (965)
Q Consensus 545 ~~~---~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g--~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~--- 616 (965)
+.. ....++..++.++|.+.|+++ +++..+.. ...++.|.+. .+. ......+.+.|.++|+++..
T Consensus 335 lg~~g~~~~~~~~~~~a~~l~~~L~~~---~~~~~~~~~~~~~~v~f~~~-~~~---~~~~~~l~~~L~~~Gi~v~~~~~ 407 (502)
T 3hbx_A 335 LGHEGYRNVMENCRENMIVLREGLEKT---ERFNIVSKDEGVPLVAFSLK-DSS---CHTEFEISDMLRRYGWIVPAYTM 407 (502)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT---TCEEECSCSSSSSEEEEEES-SCS---SCCHHHHHHHHHTTTCBCCEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC---CCEEEEeCCCCceEEEEEec-CCC---cCCHHHHHHHHHhCCcEEeeccC
Confidence 433 335666777788888888765 44544433 5567777764 211 11133678899999998642
Q ss_pred -c----CCEEEEeCCcccCHHHHHHHHHhhhcccc
Q psy8199 617 -I----GNTVYLMPPYILNKNEIQHMTSAIFQTFN 646 (965)
Q Consensus 617 -~----~~~lR~~p~~~~t~~~i~~~~~~l~~~~~ 646 (965)
. ...+|++....++.++++.+++.+.+++.
T Consensus 408 p~~~~~~~~lRisv~~~~t~edid~li~~L~~~l~ 442 (502)
T 3hbx_A 408 PPNAQHITVLRVVIREDFSRTLAERLVIDIEKVMR 442 (502)
T ss_dssp CTTCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred CcccCCceEEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 1 14799999888999999999998876553
|
| >3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987} | Back alignment and structure |
|---|
Probab=99.61 E-value=3.7e-14 Score=158.97 Aligned_cols=320 Identities=13% Similarity=0.035 Sum_probs=197.3
Q ss_pred CCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHH-HhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEE
Q psy8199 271 SNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKL-SSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKF 349 (965)
Q Consensus 271 ~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l-~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~v 349 (965)
..|++.+|+.+.++.... ....+...++.+++ +++++ ..+++++++||++|+..+++.+.. .++++|
T Consensus 14 ~~~~i~~a~~~~~~~~~~----~~~~~~~~~l~~~~~a~~~g-~~~~~v~~~sgt~al~~al~~l~~-------~~Gd~V 81 (377)
T 3ju7_A 14 PVIEYLDELKEIDASHIY----TNYGPINQRFEQTIMSGFFQ-NRGAVTTVANATLGLMAAIQLKKR-------KKGKYA 81 (377)
T ss_dssp CGGGGHHHHHHHHHHTCC----SSSCHHHHHHHHHHHHHTST-TCSEEEEESCHHHHHHHHHHHHSC-------TTCCEE
T ss_pred CcHHHHHHHHHHHHcCCc----ccCCHHHHHHHHHHHHHHhC-CCCeEEEeCCHHHHHHHHHHHcCC-------CCcCEE
Confidence 357789999988876421 11246778999999 99985 267899999999999999987511 356889
Q ss_pred EEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEcc
Q psy8199 350 ICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEP 429 (965)
Q Consensus 350 i~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep 429 (965)
|+..++|.++.......+ ..+++++.....+. .|++++++++.....++.+|+ |
T Consensus 82 i~~~~~~~~~~~~~~~~G-------------~~~~~v~~~~~~~~-----------~d~~~l~~~i~~~~~~tk~v~--~ 135 (377)
T 3ju7_A 82 LMPSFTFPATPLAAIWCG-------------LEPYFIDISIDDWY-----------MDKTVLWDKIEELKEEVAIVV--P 135 (377)
T ss_dssp EEESSSCTHHHHHHHHTT-------------CEEEEECBCTTTCS-----------BCHHHHHHHHHHHGGGEEEEC--C
T ss_pred EECCCCcHHHHHHHHHcC-------------CEEEEEecCCccCC-----------cCHHHHHHHHhcCCCCceEEE--E
Confidence 999999877633222221 12334443211111 278889988832112266665 4
Q ss_pred ccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccccccccccc-CCCcceeeec----cccCCCcccceeee
Q psy8199 430 LVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHA-EIWPDFLCLS----KGITGGYLPLSLVM 504 (965)
Q Consensus 430 ~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~-~~~pDivt~s----K~l~gG~~pig~v~ 504 (965)
.+++|...+ +++|.++|+ ||+++|+|++|+ +|.. +..... +...|+.++| |.+++| ..|+++
T Consensus 136 --~~~~G~~~~----~~~i~~la~-~~~~vi~D~a~a-~g~~---~~~~~~g~~~~d~~~~S~~~~K~l~~g--~gG~~~ 202 (377)
T 3ju7_A 136 --YATFGSWMN----LEEYEELEK-KGVPVVVDAAPG-FGLM---NGGMHYGQDFSGMIIYSFHATKPFGIG--EGGLIY 202 (377)
T ss_dssp --BCGGGBCCC----CHHHHHHHH-TTCCBEEECTTC-TTCE---ETTEETTTTCSSEEEEECBTTSSSCCB--SCEEEE
T ss_pred --ECCCCCccC----HHHHHHHHh-cCCEEEEECCCc-cCCe---ECCEeccCCCCcEEEEECCCCCcCCCC--CcEEEE
Confidence 355787765 788999999 999999999997 5422 111122 2224666654 888875 456666
Q ss_pred e-cHHHHHhhhc---cCCc---ccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcccCC-Cceee
Q psy8199 505 T-TDKIYNSIYY---KNNI---NIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITH-PKIIN 576 (965)
Q Consensus 505 ~-~~~i~~~~~~---~~~~---~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~~~-~~i~~ 576 (965)
. ++++++.+.. .+.. .....+..+..+++.++.+++.|+.+. ...++.+++.+++.+.|+++... ..+..
T Consensus 203 ~~~~~l~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~l~--~~~~~~~~~~~~~~~~L~~~~~~~~~~~~ 280 (377)
T 3ju7_A 203 SKNEEDIQRIKRMGNFGFDTNRECTMMGFNCKMSEYAAAIGIATMKKWD--DKLKERTRISEWYKQLLQSNGLMKKGWQL 280 (377)
T ss_dssp ESCHHHHHHHHHHTBTTBCTTSCBCSSCCBCCCCHHHHHHHHHHHHTHH--HHHHHHHHHHHHHHHHHHHTTTTTTTCBC
T ss_pred ECCHHHHHHHHHHHhcCCCCCCceeeccccCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhcCCCCccccccC
Confidence 5 4566555432 1100 011123455667888888888886553 35777788888888888776321 11111
Q ss_pred eec---eeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec--------------------------CCEEEEeCCc
Q psy8199 577 FRQ---KGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI--------------------------GNTVYLMPPY 627 (965)
Q Consensus 577 v~g---~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~--------------------------~~~lR~~p~~ 627 (965)
..+ .-.++.+.+. + ....+.+.+.|.++||.++.. .+.+|+....
T Consensus 281 ~~~~~~~~~~~~~~~~--~----~~~~~~l~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lp~~~ 354 (377)
T 3ju7_A 281 QKTEAVIQQFMPILCP--E----EVRNKQVIEDLKKQKIEARLYFSPSCHQQVLFRNYKSTDLTRTNKIAKRIVSLPLWE 354 (377)
T ss_dssp CCCSCBCCSSEEEECC--T----TSCHHHHHHHHHTTTBCCBCTTSSCGGGSGGGTTSCBSCCHHHHHHHHHEEEECCCT
T ss_pred CCCCcceEEEEEEEeC--C----hhhHHHHHHHHHHCCCceecccCCccccchhhhcCCCCCCHHHHHHHhCEEECCCCC
Confidence 111 1112333332 1 111457888999999977521 1468888888
Q ss_pred ccCHHHHHHHHHhhhcccccHH
Q psy8199 628 ILNKNEIQHMTSAIFQTFNELD 649 (965)
Q Consensus 628 ~~t~~~i~~~~~~l~~~~~~~~ 649 (965)
.+++++++.+++.+.+...+.+
T Consensus 355 ~~t~~di~~v~~~l~~~~~~~~ 376 (377)
T 3ju7_A 355 GMTKEIVEQIVICLGQKVVSAD 376 (377)
T ss_dssp TCCHHHHHHHHHHHTC------
T ss_pred CCCHHHHHHHHHHHHHHHhccc
Confidence 8899999999998887665543
|
| >1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=2.8e-15 Score=167.54 Aligned_cols=310 Identities=13% Similarity=0.063 Sum_probs=188.4
Q ss_pred CCHHHHHHHHHHHhhc-----ccccc---CCCCcHHHHHHHHHHHhhcCCC-CCeEEEcCCh-hHHHHHHHHHHHHHHHh
Q psy8199 271 SNSYINKALKNQLNKL-----EHVML---SNLTHKPVIKLSEKLSSLTQYK-LGHCFYGSDG-ASAVEVALKMSFHYWYN 340 (965)
Q Consensus 271 ~~p~v~~av~~~~~~~-----~~~~~---~~~~~~~~~~la~~l~~~~~~~-~~~v~~~~sG-seA~~~Al~~a~~~~~~ 340 (965)
.+|.|++|+.+.++.. +.+.. .....+...++++.++++++.. .+++++++|+ ++|++.++.....
T Consensus 14 ~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~v~~~~g~gt~al~~~~~~l~~---- 89 (360)
T 1w23_A 14 LPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPNDYQILFLQGGASLQFTMLPMNLLT---- 89 (360)
T ss_dssp CCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHCC----
T ss_pred CCHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEECCcchHHHHHHHHHhcC----
Confidence 6899999999887642 01101 1112234678999999998754 3589999988 9999998876532
Q ss_pred cCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHH-HHHhCC
Q psy8199 341 KGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEI-LLKKNH 419 (965)
Q Consensus 341 ~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~-~l~~~~ 419 (965)
.| .+.+.|+....+|+.. ..+. ... .+..+|.....+. .|+++|++ ++ .
T Consensus 90 ~~-~~g~~vi~~~~~~~~~-~~~~-------------~~g-~~~~v~~~~~~~~-----------~d~~~l~~~~i---~ 139 (360)
T 1w23_A 90 KG-TIGNYVLTGSWSEKAL-KEAK-------------LLG-ETHIAASTKANSY-----------QSIPDFSEFQL---N 139 (360)
T ss_dssp TT-CEEEEEECSHHHHHHH-HHHH-------------TTS-EEEEEEECGGGTS-----------CSCCCGGGCCC---C
T ss_pred CC-CcccEEEecchhHHHH-HHHH-------------HhC-CeEEeecccccCc-----------CCccchHhhcc---C
Confidence 11 1123344333222211 1110 011 2333333210000 24455655 44 3
Q ss_pred CcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcceee--eccccCCCc
Q psy8199 420 NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLC--LSKGITGGY 497 (965)
Q Consensus 420 ~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt--~sK~l~gG~ 497 (965)
+++.+|++.. ++|++|.+.+ +++++||+++|+||+|+.+... .....+ |+++ ++|.++.+
T Consensus 140 ~~~k~v~~~~-~~nptG~~~~---------~i~~~~~~~li~D~a~~~~~~~---~~~~~~----di~~~s~sK~~~~~- 201 (360)
T 1w23_A 140 ENDAYLHITS-NNTIYGTQYQ---------NFPEINHAPLIADMSSDILSRP---LKVNQF----GMIYAGAQKNLGPS- 201 (360)
T ss_dssp TTEEEEEEES-EETTTTEECS---------SCCCCCSSCEEEECTTTTTSSC---CCGGGC----SEEEEETTTTTSCT-
T ss_pred CCCCEEEEeC-CCCCcceecc---------cccccCCceEEEechhhcCCCC---cCcccC----CEEEEEcccccCCC-
Confidence 4577777777 7999998764 2344899999999999754321 112211 6765 56988642
Q ss_pred ccceeeeecHHHHHhhhccCCccccc-------ccCCC-CCCHHHHHHHHHHHHHHhcc----cHHHHHHHHHHHHHHHH
Q psy8199 498 LPLSLVMTTDKIYNSIYYKNNINIFL-------HSHSY-SGNPLACCAALATLEIFNKD----NILQRISQDMKKITKAL 565 (965)
Q Consensus 498 ~pig~v~~~~~i~~~~~~~~~~~~~~-------~~~t~-~~~~~~~aaa~a~L~~~~~~----~~~~~~~~~~~~l~~~L 565 (965)
++|++++++++++.+.... .... .+.++ +.+..+++++.++|+.+.+. ...++.+++.+++.+.|
T Consensus 202 -G~G~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L 278 (360)
T 1w23_A 202 -GVTVVIVKKDLLNTKVEQV--PTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTI 278 (360)
T ss_dssp -TCEEEEEEHHHHCSCCTTC--CGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred -CcEEEEEcHHHHhhcccCC--cchhhhhhhhhccCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 5899999999887654310 0110 12333 34566777788888876542 35677777888888888
Q ss_pred HcccCCCce-eee--e-ce-eEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecC---CEEEEeCCcccCHHHHHHH
Q psy8199 566 TSLITHPKI-INF--R-QK-GMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG---NTVYLMPPYILNKNEIQHM 637 (965)
Q Consensus 566 ~~l~~~~~i-~~v--~-g~-G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~---~~lR~~p~~~~t~~~i~~~ 637 (965)
+++ +++ ... + +. +.++.+.+. + ......+.+.|.++||.+.++. +++|++++...++++++++
T Consensus 279 ~~~---~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~~~l~~~gi~~~~~~~~~~~iRis~~~~~~~~~i~~~ 349 (360)
T 1w23_A 279 DES---NGFYVGHAEKGSRSLMNVTFNLR--N----EELNQQFLAKAKEQGFVGLNGHRSVGGCRASIYNAVPIDACIAL 349 (360)
T ss_dssp HTT---TTSSEESSCGGGBCSSEEEEECS--S----HHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHH
T ss_pred HHc---cCcccccCCchhccCcEEEEEcC--C----CccHHHHHHHHHHCCeeeecCCCCCCeEEEEecCCCCHHHHHHH
Confidence 765 322 221 2 13 447777653 2 1124467778899999998753 6899999888899999999
Q ss_pred HHhhhcc
Q psy8199 638 TSAIFQT 644 (965)
Q Consensus 638 ~~~l~~~ 644 (965)
++++.+.
T Consensus 350 ~~~l~~~ 356 (360)
T 1w23_A 350 RELMIQF 356 (360)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9888654
|
| >3c8f_A Pyruvate formate-lyase 1-activating enzyme; adoMet radical, SAM radical, activase, glycyl radical, 4Fe- 4S, carbohydrate metabolism, cytoplasm; HET: MT2 PGE; 2.25A {Escherichia coli} PDB: 3cb8_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=2.1e-14 Score=151.03 Aligned_cols=194 Identities=15% Similarity=0.225 Sum_probs=149.7
Q ss_pred cCCCCCCCCCCCCCCcCCCCcccccCCCHHHHHHHHHHHHHC---CCCEEEEeeccCCCCcccHHHHHHHHHHHHhcCcE
Q psy8199 689 TGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSD---GATRFCMGAAWRELKDRDLDNIENMICEVKKIGLE 765 (965)
Q Consensus 689 s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~---g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~~~~ 765 (965)
|++|+++|.||..+..... ...+.++++++++.+.+..+. +...+.++||+ |+. ..+.+.++++.+++.++.
T Consensus 26 t~~Cn~~C~~C~~~~~~~~--~~~~~~~~~~i~~~i~~~~~~~~~~~~~i~~~GGE-P~l--~~~~l~~l~~~~~~~~~~ 100 (245)
T 3c8f_A 26 FQGCLMRCLYCHNRDTWDT--HGGKEVTVEDLMKEVVTYRHFMNASGGGVTASGGE-AIL--QAEFVRDWFRACKKEGIH 100 (245)
T ss_dssp ESCCSCCCTTCSCGGGCCT--TCSEEECHHHHHHHHGGGHHHHTSTTCEEEEEESC-GGG--GHHHHHHHHHHHHTTTCC
T ss_pred eCCCCCCCCCCCCchhccc--ccCccCCHHHHHHHHHHhhhhhcCCCCeEEEECCC-cCC--CHHHHHHHHHHHHHcCCc
Confidence 7899999999987643221 123457899999999876654 46889998864 533 345678888888877766
Q ss_pred eEE-ecCCC--CHHHHHHHHHhCCCeEeccCCC-CHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEe--cCCCHH
Q psy8199 766 TCL-TLGML--NENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIG--LSESRD 839 (965)
Q Consensus 766 i~~-~~~~~--~~e~l~~Lk~aG~~~i~i~~es-~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~G--l~et~e 839 (965)
+.+ ++|.+ +.+.++.|+++ ++.+.+++++ +++.++++++. ++++.+++++.++++|+++...+++- .+++.+
T Consensus 101 i~i~Tng~~~~~~~~~~~l~~~-~~~v~isld~~~~~~~~~~~~~-~~~~~~~~i~~l~~~g~~v~i~~~~~~g~~~~~~ 178 (245)
T 3c8f_A 101 TCLDTNGFVRRYDPVIDELLEV-TDLVMLDLKQMNDEIHQNLVGV-SNHRTLEFAKYLANKNVKVWIRYVVVPGWSDDDD 178 (245)
T ss_dssp EEEEECCCCCCCCHHHHHHHHT-CSEEEEECCCSSHHHHHHHHSS-CSHHHHHHHHHHHHHTCCEEEEEEECTTTTCCHH
T ss_pred EEEEeCCCcCcCHHHHHHHHHh-CCEEEEeCCCCCHHHhhhccCC-CHHHHHHHHHHHHhcCCEEEEEEeecCCCCCCHH
Confidence 544 44666 78899999998 9999999999 89999999864 46999999999999999887665553 347889
Q ss_pred HHHHHHHHHHhcCCCC-CceeeccccccCCC---------CCCCCCCCCHHHHHHHHHHHHH
Q psy8199 840 QRAELIFQLANLNPYP-ESVPINNLVQIKGT---------PLYGSSILDPLEFIRTIAVARI 891 (965)
Q Consensus 840 d~~~~l~~l~~l~~~~-~~i~~~~~~P~~gT---------~l~~~~~~~~~~~~~~ia~~R~ 891 (965)
++.+.++++.+++ + ..+.+.++.|.+++ ++.+.++++.+++.++...+|.
T Consensus 179 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (245)
T 3c8f_A 179 SAHRLGEFTRDMG--NVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMERVKGILEQ 238 (245)
T ss_dssp HHHHHHHHHHHHC--CEEEEEEEECCCCSHHHHHHTTCCCTTTTCCCCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcC--CCceeEEEeccccChhHHHhhCcccccccCCCCCHHHHHHHHHHHHh
Confidence 9999999999998 5 67778888886654 3444567788888888777764
|
| >1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=8.7e-15 Score=169.75 Aligned_cols=334 Identities=12% Similarity=0.035 Sum_probs=193.7
Q ss_pred ccccccccchhccCCCCCHHHHHHHHHHHhhcc--cccc-CC-CC----cHHHHHHHHHHHhhcCCCCCe---EEEcCCh
Q psy8199 255 RYLDAISSWWVNLFGHSNSYINKALKNQLNKLE--HVML-SN-LT----HKPVIKLSEKLSSLTQYKLGH---CFYGSDG 323 (965)
Q Consensus 255 ~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~--~~~~-~~-~~----~~~~~~la~~l~~~~~~~~~~---v~~~~sG 323 (965)
..|++.++. ...+|.|.+|+.+.+.+.. .+.. .. .. .+....+.++++++++...+. .+..+||
T Consensus 45 ~~i~L~a~e-----~~~~~~V~eA~~~~l~~~~~~g~p~~~~y~~~~~~~~le~~~~~~~a~~~g~~~~~~~~~V~~~sG 119 (483)
T 1rv3_A 45 VGLELIASE-----NFASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSG 119 (483)
T ss_dssp SSEECCTTC-----CCCCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSH
T ss_pred cCeEEEcCC-----CCCCHHHHHHHHHHHhccCcccCCCccccCcchhHHHHHHHHHHHHHHHhCCCcccCceEEEECCc
Confidence 456665542 2368999999988876521 0110 01 11 223345558888998765442 2455667
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCC--CCCCCCCCCChh
Q psy8199 324 ASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTP--DSRNINKGNSAN 401 (965)
Q Consensus 324 seA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 401 (965)
++|+.+++.... .++++|++.+..|+|...-.... ...... +... ....++.+ ...+.
T Consensus 120 s~an~~~~~all--------~pGD~Vl~~~~~~~~~~~~~~~~-~~~~v~--~~G~--~~~~v~~~~~~~~~~------- 179 (483)
T 1rv3_A 120 SPANFAVYTALV--------EPHGRIMGLDLPDGGHLTHGFMT-DKKKIS--ATSI--FFESMAYKVNPDTGY------- 179 (483)
T ss_dssp HHHHHHHHHHHT--------CTTCEEEEECGGGTCCGGGCCBC-SSCBCS--HHHH--HSEEEEECBCTTTCS-------
T ss_pred HHHHHHHHHHhc--------CCCCEEEEecCccCcCcchhhhh-cccCcc--cccc--eEEEEECccccCCCc-------
Confidence 799988887653 36788999998876652111000 000000 0000 02233321 11111
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEecccc-CCCccccc-ccccc
Q psy8199 402 EIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAV-GCGRTGKF-FACEH 479 (965)
Q Consensus 402 ~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-g~gr~G~~-~~~~~ 479 (965)
.|+++|++++.+. ++.+|++ . ..+++ .+.+ +++|+++|++||+++|+||+|. |+-..|.. ..+.
T Consensus 180 ----iD~d~le~~i~~~--~tklIi~-~-~sn~~-~~~d----l~~i~~ia~~~g~~livD~ah~~g~~~~~~~~~p~~- 245 (483)
T 1rv3_A 180 ----IDYDRLEENARLF--HPKLIIA-G-TSCYS-RNLD----YGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFE- 245 (483)
T ss_dssp ----BCHHHHHHHHHHH--CCSEEEE-C-CSSCC-SCCC----HHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGG-
T ss_pred ----CCHHHHHHHHhhc--CCcEEEE-e-CCcCC-CcCC----HHHHHHHHHHcCCEEEEEccchhcccccCCCCCCCC-
Confidence 3788999998732 3455666 4 35555 5554 8999999999999999999985 22111211 1111
Q ss_pred cCCCcceee--eccccCCCcccceeeeecHHH---------------HHhhhccCCcccccccCCCCCCHHHHHHHHHHH
Q psy8199 480 AEIWPDFLC--LSKGITGGYLPLSLVMTTDKI---------------YNSIYYKNNINIFLHSHSYSGNPLACCAALATL 542 (965)
Q Consensus 480 ~~~~pDivt--~sK~l~gG~~pig~v~~~~~i---------------~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L 542 (965)
..|+++ ++|+++| ++.|++++++++ .+.+... ...+..-+.+...+++..+++
T Consensus 246 ---~~div~~s~~K~l~G--prgG~i~~~~~~~~~~~~~g~~~~y~~~~~~~~~-----~~~~~~g~~~~~~iaal~~Al 315 (483)
T 1rv3_A 246 ---HCHVVTTTTHKTLRG--CRAGMIFYRRGVRSVDPKTGKEILYNLESLINSA-----VFPGLQGGPHNHAIAGVAVAL 315 (483)
T ss_dssp ---TCSEEEEESSGGGCC--CSCEEEEEECSBCC-------CCBCCHHHHHHHH-----HTTTTCCSCCHHHHHHHHHHH
T ss_pred ---CCcEEEecCcccCCC--CCceEEEEcchhhhhccccCcchhhHHHHHhhhh-----cCCcccCCccHHHHHHHHHHH
Confidence 358775 4699966 577999988752 2222210 011111123444556656677
Q ss_pred HHHhc---ccHHHHHHHHHHHHHHHHHcccCCCceeeeec-e-eEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEe--
Q psy8199 543 EIFNK---DNILQRISQDMKKITKALTSLITHPKIINFRQ-K-GMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLR-- 615 (965)
Q Consensus 543 ~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g-~-G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~-- 615 (965)
+.+.+ +...+++.++.+++.+.|.++ ++..+.+ . ..++.+++. ..+ .....+.+.|.+.||.+.
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~v~~~-~~g----~~~~~~~~~L~~~gI~v~~~ 386 (483)
T 1rv3_A 316 KQAMTPEFKEYQRQVVANCRALSAALVEL----GYKIVTGGSDNHLILVDLR-SKG----TDGGRAEKVLEACSIACNKN 386 (483)
T ss_dssp HHHTSHHHHHHHHHHHHHHHHHHHHHHHT----TCEEGGGSCSSSEEEEEGG-GGT----CCHHHHHHHHHHTTEECEEE
T ss_pred HHHhChhHHHHHHHHHHHHHHHHHHHHhc----CCEeccCCCCCceEEEecc-CCC----CCHHHHHHHHHhCCcEEecC
Confidence 76543 346777888888888888765 3333322 1 234455543 111 013356677888999988
Q ss_pred --ec------CCEEEEeCCcccC----HHHHHHHHHhhhcccc
Q psy8199 616 --PI------GNTVYLMPPYILN----KNEIQHMTSAIFQTFN 646 (965)
Q Consensus 616 --~~------~~~lR~~p~~~~t----~~~i~~~~~~l~~~~~ 646 (965)
|+ .+.+||+.+...+ +++++++++.+.+.+.
T Consensus 387 ~~pg~~~~~~~~~iRis~~~~~t~g~~~edi~~~~~~l~~~l~ 429 (483)
T 1rv3_A 387 TCPGDKSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIE 429 (483)
T ss_dssp CCSSCSCTTSCCEEEEECHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCCCCceEEeecCCcccCCCCHHHHHHHHHHHHHHHH
Confidence 53 2589999886656 9999999999876543
|
| >3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=2.5e-13 Score=158.44 Aligned_cols=313 Identities=11% Similarity=0.048 Sum_probs=183.5
Q ss_pred HHHHHHHHHHhhcCCC--CCeEEEcCChhHHHHHHHHHHHHHH----HhcCCC--CceEEEEEcCCccCCccccccccCC
Q psy8199 298 PVIKLSEKLSSLTQYK--LGHCFYGSDGASAVEVALKMSFHYW----YNKGFL--NKKKFICLQNSYHGETLGALAVTNI 369 (965)
Q Consensus 298 ~~~~la~~l~~~~~~~--~~~v~~~~sGseA~~~Al~~a~~~~----~~~g~~--~~~~vi~~~~~yHg~~~~~~~~~~~ 369 (965)
...+++++++++++.. .+.++|++|||+||..|+.+++... ...|.. ++..|++.+.+ |.+...+....|.
T Consensus 136 le~~~~~~l~~~~g~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~G~~~~~~~~v~~s~~~-H~s~~~~~~~~g~ 214 (511)
T 3vp6_A 136 MEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQS-HYSIKKAGAALGF 214 (511)
T ss_dssp HHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTHHHHHCGGGSCCEEEEEETTS-CTHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhCCCCCCCceEECCchHHHHHHHHHHHHHHhhhhhhhcCcccCCCeEEEECCCc-hHHHHHHHHHcCC
Confidence 3455666778887654 4589999999999999999988742 222321 23455555544 4433332222221
Q ss_pred cCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhC---CCcEEEEEEccccccCCCcccCChHHHH
Q psy8199 370 QSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKN---HNKIAAIIIEPLVQCAGGMIMYDSIYLK 446 (965)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~---~~~~aaii~ep~v~~~~G~~~~~~~~l~ 446 (965)
. ...+..+|.... +. .|+++|+++|++. +..+.+|++.. +++++|.+.+ ++
T Consensus 215 g---------~~~~~~v~~d~~-~~-----------~d~~~Le~~i~~~~~~g~~~~~vv~~~-~~~~~G~vd~----l~ 268 (511)
T 3vp6_A 215 G---------TDNVILIKCNER-GK-----------IIPADFEAKILEAKQKGYVPFYVNATA-GTTVYGAFDP----IQ 268 (511)
T ss_dssp C---------GGGEEEECBCTT-SC-----------BCHHHHHHHHHHHHHTTCEEEEEEEEB-SCSSSCCBCC----HH
T ss_pred C---------CCcEEEeecCCC-Cc-----------cCHHHHHHHHHHHHhcCCCcEEEEEec-CCCCCccccc----HH
Confidence 0 013445554322 11 3788999998653 22366777776 6889999877 99
Q ss_pred HHHHHHHhcCCeEEEeccccCCCcccccccccccCC-Ccceeee--ccccCCCcccceeeeecH-HHHHhhhccCCcccc
Q psy8199 447 LVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEI-WPDFLCL--SKGITGGYLPLSLVMTTD-KIYNSIYYKNNINIF 522 (965)
Q Consensus 447 ~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~-~pDivt~--sK~l~gG~~pig~v~~~~-~i~~~~~~~~~~~~~ 522 (965)
+|.++|++||+++++|++|.|.......+.....|+ ..|.+++ .|.+++. ...|+++.++ +++...... ...+
T Consensus 269 ~I~~ia~~~~~~lhvD~a~~~~~~~~~~~~~~~~g~~~aDsv~~~~hK~l~~p-~g~g~l~~~~~~~~~~~~~~--~~~y 345 (511)
T 3vp6_A 269 EIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVL-LQCSAILVKEKGILQGCNQM--HASY 345 (511)
T ss_dssp HHHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCC-SCCEEEEESSTTHHHHHHCC--CCTT
T ss_pred HHHHHHHHcCCEEEEEccchhhHhhChhhhhhccCCccCCEEEECcccccCCC-cCeEEEEEeCHHHHHHHhcc--CCcc
Confidence 999999999999999999975322111111222233 4688765 5877664 4667777754 344432210 0001
Q ss_pred cc-----------------cCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcccCCCceeeee---ceeE
Q psy8199 523 LH-----------------SHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFR---QKGM 582 (965)
Q Consensus 523 ~~-----------------~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~---g~G~ 582 (965)
.. ..+-....+++.+++..+..-.-++..++..++.+++.+.|++. |++..+. +...
T Consensus 346 l~~~~~~~~~~~~~~~~~~~~~r~~~al~~~~al~~~g~~gl~~~~~~~~~~a~~l~~~L~~~---pg~~l~~~~~p~~~ 422 (511)
T 3vp6_A 346 LFQQDKHYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNR---EEFEMVFNGEPEHT 422 (511)
T ss_dssp TCCSSCSSCGGGCCGGGSSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC---TTEEESSSSCCSSS
T ss_pred ccCcccccccccCccCCCCCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC---CCEEEEecCCCCeE
Confidence 10 00111234444444444422112346777778888888888764 5555332 4455
Q ss_pred EEEEEEeecCcc-----c------hhhHHHHHHHHHHHcCcEEee----cC--CEEEEeC-CcccCHHHHHHHHHhhhcc
Q psy8199 583 IWAFDVIIEDPE-----Q------IETFSKKFFVAALKNELLLRP----IG--NTVYLMP-PYILNKNEIQHMTSAIFQT 644 (965)
Q Consensus 583 ~~~i~~~~~~~~-----~------~~~~~~~~~~~l~~~Gi~~~~----~~--~~lR~~p-~~~~t~~~i~~~~~~l~~~ 644 (965)
++.+.+. .... . .......+.+.|.++|+++.. .+ +++|+++ +...+.++++.+++.+.+.
T Consensus 423 ~v~f~~~-p~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~G~~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~ll~~i~~~ 501 (511)
T 3vp6_A 423 NVCFWYI-PQSLRGVPDSPQRREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIERL 501 (511)
T ss_dssp CEEEEEC-CGGGSSCCCCHHHHHHHHHHHHHHHHHHHHHTSCEEEEEEETTEEEEEEECCCCTTCCHHHHHHHHHHHHHH
T ss_pred EEEEEEe-CccccccccchhHHHHHHHHHHHHHHHHHhcCCEEEEEEEeCCceEEEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 5555543 1100 0 011233688889999965432 12 3699998 6788999999999887654
|
| >2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=8.5e-15 Score=163.80 Aligned_cols=322 Identities=9% Similarity=0.037 Sum_probs=194.0
Q ss_pred CCcccccccccchhccCCCCCHHHHHHHHHHHhhcccc------ccCCC--CcHHHHHHHHHHHhhcCCCCC-eE-EEcC
Q psy8199 252 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHV------MLSNL--THKPVIKLSEKLSSLTQYKLG-HC-FYGS 321 (965)
Q Consensus 252 dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~------~~~~~--~~~~~~~la~~l~~~~~~~~~-~v-~~~~ 321 (965)
.++.|+|..+.. -.+|+|++|+.+.+.+.... ....+ ..+...+++++++++++...+ ++ ++++
T Consensus 2 ~~~~~l~~~~~~------~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~i~~t~ 75 (362)
T 2c0r_A 2 SERAYNFNAGPA------ALPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPTGYKVLFIQG 75 (362)
T ss_dssp CCCCEECCSSSC------CCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCCSSEEEEEESS
T ss_pred CcceeeccCCCC------CCCHHHHHHHHHHHhhhhhcCccccccCCCcHHHHHHHHHHHHHHHHHhCCCCCcEEEEECC
Confidence 355677765432 26899999999887542100 00111 223467888999999876443 64 6789
Q ss_pred ChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCC--CCCCCCCCC
Q psy8199 322 DGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPD--SRNINKGNS 399 (965)
Q Consensus 322 sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 399 (965)
||++|+..+++.... ++++|++.+.++++..... ...... .+..++.+. .....
T Consensus 76 g~t~a~~~~~~~l~~--------~gd~vl~~~~~~~~~~~~~-----------~~~~~g-~~~~v~~~~~~~~~~~---- 131 (362)
T 2c0r_A 76 GASTQFAMIPMNFLK--------EGQTANYVMTGSWASKALK-----------EAKLIG-DTHVAASSEASNYMTL---- 131 (362)
T ss_dssp HHHHHHHHHHHHHCC--------TTCEEEEEECSHHHHHHHH-----------HHHHHS-CEEEEEECGGGTTCSC----
T ss_pred CchHHHHHHHHhcCC--------CCCeEEEEecCcHhHHHHH-----------HHHHhC-CeEEEecccccccccC----
Confidence 999999999986632 4577887776654431100 001112 333444321 01100
Q ss_pred hhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccc
Q psy8199 400 ANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEH 479 (965)
Q Consensus 400 ~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~ 479 (965)
.|+++++ + .+++.+|++.+ ++|++|.+..+ +++| ||+++|+||+|. +|.. .....
T Consensus 132 ------~~~~~~~--i---~~~t~~v~~~~-~~n~tG~~~~~---l~~i------~~~~vivD~a~~-~~~~--~~~~~- 186 (362)
T 2c0r_A 132 ------PKLQEIQ--L---QDNAAYLHLTS-NETIEGAQFKA---FPDT------GSVPLIGDMSSD-ILSR--PFDLN- 186 (362)
T ss_dssp ------CCGGGCC--C---CTTEEEEEEES-EETTTTEECSS---CCCC------TTSCEEEECTTT-TTSS--CCCGG-
T ss_pred ------CCHHHcc--c---CCCcCEEEEeC-CcCccceeccc---cccc------CCCEEEEEChhh-ccCC--ccchh-
Confidence 0122222 2 34567777766 68999986322 3343 899999999996 4321 11111
Q ss_pred cCCCccee--eeccccCCCcccceeeeecHHHHHhhhccCCccccc-------c-cCCCCCCHHHHHHHHHHHHHHhc--
Q psy8199 480 AEIWPDFL--CLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFL-------H-SHSYSGNPLACCAALATLEIFNK-- 547 (965)
Q Consensus 480 ~~~~pDiv--t~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~-------~-~~t~~~~~~~~aaa~a~L~~~~~-- 547 (965)
.. |++ +++|.++. ..+|++++++++++.+... ...+. . ...++.++.+++++.++|+.+.+
T Consensus 187 -~~--d~~~~s~~K~~g~--~G~G~l~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~~ 259 (362)
T 2c0r_A 187 -QF--GLVYAGAQKNLGP--SGVTVVIVREDLVAESPKH--LPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEERG 259 (362)
T ss_dssp -GC--SEEEEETTTTTCC--SSCEEEEEEGGGSSSCCTT--SCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTT
T ss_pred -HC--cEEEEeccccccC--cCcEEEEEcHHHHhhcccc--CchHHhHHHHhhccCcCCCchHHHHHHHHHHHHHHHHhC
Confidence 12 766 46898853 2379999999887665431 00000 0 22345678889999999987654
Q ss_pred --ccHHHHHHHHHHHHHHHHHcccCCCce-eee----eceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec---
Q psy8199 548 --DNILQRISQDMKKITKALTSLITHPKI-INF----RQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI--- 617 (965)
Q Consensus 548 --~~~~~~~~~~~~~l~~~L~~l~~~~~i-~~v----~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~--- 617 (965)
+...++.+++.+++.+.|+++ +.+ ... ...+.++.+.+. + ......+.+.|.++||.+.++
T Consensus 260 ~~~~~~~~~~~~~~~l~~~L~~~---~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~~~L~~~gi~~~~g~~~ 330 (362)
T 2c0r_A 260 GLEGVQQANRKKASLIYDAIDQS---GGFYRGCVDVDSRSDMNITFRLA--S----EELEKEFVKASEQEGFVGLKGHRS 330 (362)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTS---TTSSEESSCGGGBCSSEEEEECS--C----HHHHHHHHHHHHHTTEESCBCCTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHc---CCccccCCChHHcCCcEEEEEcC--C----cchHHHHHHHHHHCCCeeccCCCC
Confidence 346677778888888888765 212 211 112334555442 1 112456778899999988764
Q ss_pred CCEEEEeCCcccCHHHHHHHHHhhhcc
Q psy8199 618 GNTVYLMPPYILNKNEIQHMTSAIFQT 644 (965)
Q Consensus 618 ~~~lR~~p~~~~t~~~i~~~~~~l~~~ 644 (965)
.+.+|++.....++++++++++.+.+.
T Consensus 331 ~~~iRis~~~~~~~e~i~~l~~~l~~~ 357 (362)
T 2c0r_A 331 VGGLRASIYNAVPYESCEALVQFMEHF 357 (362)
T ss_dssp TCSEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 257999988778999999999988654
|
| >2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A | Back alignment and structure |
|---|
Probab=99.58 E-value=3.9e-14 Score=162.44 Aligned_cols=316 Identities=12% Similarity=0.067 Sum_probs=177.0
Q ss_pred CCHHHHHHHHHHHhh-cccc-ccCC--C---CcHHHH-HHHHHHHhhcCCCCC---eEEEcCChhHHHHHHHHHHHHHHH
Q psy8199 271 SNSYINKALKNQLNK-LEHV-MLSN--L---THKPVI-KLSEKLSSLTQYKLG---HCFYGSDGASAVEVALKMSFHYWY 339 (965)
Q Consensus 271 ~~p~v~~av~~~~~~-~~~~-~~~~--~---~~~~~~-~la~~l~~~~~~~~~---~v~~~~sGseA~~~Al~~a~~~~~ 339 (965)
.+|+|++|+...+.+ .... .... . .....+ ...++++++++...+ ..++++||++||..++....
T Consensus 66 ~~~~V~eA~~~~l~~~y~~G~~g~r~~~G~~~~~~lE~~a~~~~a~l~g~~~~~~~~~v~~~sGt~An~~al~al~---- 141 (490)
T 2a7v_A 66 CSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALL---- 141 (490)
T ss_dssp CCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHC----
T ss_pred CCHHHHHHHHHHHcCCCccCCCcccccCccHHHHHHHHHHHHHHHHHcCCCcccCceEEeCCchHHHHHHHHHHHc----
Confidence 489999999887754 2111 1001 1 112222 334788999975543 24567799999999998764
Q ss_pred hcCCCCceEEEEEcCCccCCcc-c------cccccCCcCccchhcccCCCeeEecCC--CCCCCCCCCChhHHHHHHHHH
Q psy8199 340 NKGFLNKKKFICLQNSYHGETL-G------ALAVTNIQSFKEIYTSLLNKTYIITTP--DSRNINKGNSANEIARCAIFD 410 (965)
Q Consensus 340 ~~g~~~~~~vi~~~~~yHg~~~-~------~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~d~~~ 410 (965)
.++++|++.+..|.|... + ....++. ....++++ ...+. .|+++
T Consensus 142 ----~pGD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~------------~~~~~~~~vd~~~~~-----------iD~d~ 194 (490)
T 2a7v_A 142 ----QPHDRIMGLDLPDGGHLTHGYMSDVKRISATSI------------FFESMPYKLNPKTGL-----------IDYNQ 194 (490)
T ss_dssp ----CSCEECCC-------------------------------------------CCBCTTTCS-----------BCHHH
T ss_pred ----CCCCEecccCccccccccchhhhcchhHHHcCC------------eEEEEecccccccCC-----------cCHHH
Confidence 367889888877644211 0 1111110 01111211 00111 37899
Q ss_pred HHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEecccc-CCCccccc-ccccccCCCccee-
Q psy8199 411 LEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAV-GCGRTGKF-FACEHAEIWPDFL- 487 (965)
Q Consensus 411 le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-g~gr~G~~-~~~~~~~~~pDiv- 487 (965)
|++++.+.. ..+|++.. .. .|...+ +++|+++|++||++||+|++|. |+...|.. ..++ ..|++
T Consensus 195 le~~l~~~~--~klIi~~~-s~--~~~~~d----l~~i~~ia~~~g~~livD~Ah~~glv~~g~~~~~~~----~aDiv~ 261 (490)
T 2a7v_A 195 LALTARLFR--PRLIIAGT-SA--YARLID----YARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFK----HADIVT 261 (490)
T ss_dssp HHHHHHHHC--CSEEEECC-SS--CCSCCC----HHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGG----TCSEEE
T ss_pred HHHHHhhcC--CcEEEEcC-CC--CCCccc----HHHHHHHHHHcCCEEEEccccccccccCCcCCCCCC----CCCEEE
Confidence 999886432 23555543 12 233344 8999999999999999999975 22112211 1111 25777
Q ss_pred -eeccccCCCcccceeeeecHH---------------HHHhhhccCCcccccccCCCCC-CHHHHHHHHHHHHHHhc---
Q psy8199 488 -CLSKGITGGYLPLSLVMTTDK---------------IYNSIYYKNNINIFLHSHSYSG-NPLACCAALATLEIFNK--- 547 (965)
Q Consensus 488 -t~sK~l~gG~~pig~v~~~~~---------------i~~~~~~~~~~~~~~~~~t~~~-~~~~~aaa~a~L~~~~~--- 547 (965)
+++|+++| .+.|+++++++ +.+.+.. ....++.++ ++..+++..+++..+..
T Consensus 262 ~S~hK~l~G--p~GG~i~~~~~~~~~~~~~~~~~~~~l~~~i~~------~~~~g~qggp~~~~iaAla~Al~~~~~~~~ 333 (490)
T 2a7v_A 262 TTTHKTLRG--ARSGLIFYRKGVKAVDPKTGREIPYTFEDRINF------AVFPSLQGGPHNHAIAAVAVALKQACTPMF 333 (490)
T ss_dssp EESSGGGCS--CSCEEEEEECSEEEEETTTEEEEECCCHHHHHH------HHTTTTCCSCCHHHHHHHHHHHHHHHSHHH
T ss_pred ECCcccCcc--ccchheeeccchhcccccccchhhHHHHHHHHH------HhcccCCCCchHHHHHHHHHHHHHHhhhhH
Confidence 46899966 46688888764 3333332 122233333 44445555556665532
Q ss_pred ccHHHHHHHHHHHHHHHHHcccCCCceeeeec--eeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEee----c----
Q psy8199 548 DNILQRISQDMKKITKALTSLITHPKIINFRQ--KGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRP----I---- 617 (965)
Q Consensus 548 ~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g--~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~----~---- 617 (965)
++..+++.++.++|.+.|.+. ++..+.+ ...++.+++. ..+ .....+.+.|.+.||.+.. +
T Consensus 334 ~~~~~~~~~na~~L~~~L~~~----G~~v~~~~t~t~lv~vdl~-~~g----~~~~~~~~~L~~~GI~v~~~~~p~d~~p 404 (490)
T 2a7v_A 334 REYSLQVLKNARAMADALLER----GYSLVSGGTDNHLVLVDLR-PKG----LDGARAERVLELVSITANKNTCPGDRSA 404 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT----TCEEGGGSCSSSEEEEECT-TTT----CCHHHHHHHHHHTTEECEEECCTTCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHc----CcEEecCCCCCeEEEEEeC-CCC----CCHHHHHHHHHhCCeEEecCccCCCCCC
Confidence 346788889999999999874 3433322 2345556553 111 1134567788899999863 2
Q ss_pred --CCEEEEeCCc----ccCHHHHHHHHHhhhccccc
Q psy8199 618 --GNTVYLMPPY----ILNKNEIQHMTSAIFQTFNE 647 (965)
Q Consensus 618 --~~~lR~~p~~----~~t~~~i~~~~~~l~~~~~~ 647 (965)
...+|+..|. .+++++++++.+.+.+++..
T Consensus 405 ~~~~~iRig~~a~t~~g~~~~d~~~~~~~i~~~l~~ 440 (490)
T 2a7v_A 405 ITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNI 440 (490)
T ss_dssp SSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCceEecccccccCCCCHHHHHHHHHHHHHHHHh
Confidence 2579995543 47899999999888776543
|
| >3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=2.4e-14 Score=161.59 Aligned_cols=270 Identities=7% Similarity=0.016 Sum_probs=162.6
Q ss_pred cHHHHHHHHHHHhhcC--CCC-CeEEEcCChhHHHHHHHHHHHHHHHhcCCCCce----EEEEEcCCccCCccccccccC
Q psy8199 296 HKPVIKLSEKLSSLTQ--YKL-GHCFYGSDGASAVEVALKMSFHYWYNKGFLNKK----KFICLQNSYHGETLGALAVTN 368 (965)
Q Consensus 296 ~~~~~~la~~l~~~~~--~~~-~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~----~vi~~~~~yHg~~~~~~~~~~ 368 (965)
.+.+..+++.+.. .+ ... ++|++|+|+++|+..+++.... +++ .|++.+++|.++.......+.
T Consensus 71 ~~lr~aia~~~~~-~g~~~~~~~~i~~t~G~~~al~~~~~~l~~--------~Gd~~~~~Vlv~~P~y~~~~~~~~~~g~ 141 (391)
T 3bwn_A 71 PELEDAIKDLHGV-VGNAATEDRYIVVGTGSTQLCQAAVHALSS--------LARSQPVSVVAAAPFYSTYVEETTYVRS 141 (391)
T ss_dssp HHHHHHHHHHHHH-HCSBCCSSSEEEEEEHHHHHHHHHHHHHHH--------TSSSSSEEEEECSSCCTHHHHHHHTTCB
T ss_pred HHHHHHHHHHHHh-cCCCCCCCCeEEEeCChHHHHHHHHHHhcC--------CCCCCcceEEEcCCCchhHHHHHHHcCC
Confidence 4444555554442 11 123 5899999999999999987754 345 899999999887433322221
Q ss_pred CcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHH
Q psy8199 369 IQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLV 448 (965)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l 448 (965)
.+..++.. .+.++ ..++.+|++.. ++|++|.+.. +
T Consensus 142 -------------~~~~~~~d------------------~~~l~------~~~~k~v~l~~-p~NPtG~~~~------~- 176 (391)
T 3bwn_A 142 -------------GMYKWEGD------------------AWGFD------KKGPYIELVTS-PNNPDGTIRE------T- 176 (391)
T ss_dssp -------------TTEEEEEE------------------STTCC------CCSCEEEEEES-SCTTTCCCCC------C-
T ss_pred -------------eEEEecCC------------------HHHcC------CCCCEEEEECC-CCCCCchhHH------H-
Confidence 11122211 01111 12344454443 4899998873 2
Q ss_pred HHHHHh-cC--CeEEEeccccCCCccccccccc-ccCCCcceeeeccccC-CCcccceeeee-cHHHHHhhhccCCcccc
Q psy8199 449 REICNN-YN--IHLIADEIAVGCGRTGKFFACE-HAEIWPDFLCLSKGIT-GGYLPLSLVMT-TDKIYNSIYYKNNINIF 522 (965)
Q Consensus 449 ~~l~~~-~g--~llI~DEv~tg~gr~G~~~~~~-~~~~~pDivt~sK~l~-gG~~pig~v~~-~~~i~~~~~~~~~~~~~ 522 (965)
+|++ |+ +++|+||+|. ++ ...... ..+...-+-+|||.++ .| +++|++++ ++++++.+.. .
T Consensus 177 --l~~~~~~~~~~ii~De~y~-~~---~~~~l~~~~~~~i~~~S~SK~~g~~G-lRiG~~~~~~~~l~~~l~~------~ 243 (391)
T 3bwn_A 177 --VVNRPDDDEAKVIHDFAYY-WP---HYTPITRRQDHDIMLFTFSKITGHAG-SRIGWALVKDKEVAKKMVE------Y 243 (391)
T ss_dssp --CC-----CCCEEEEECTTC-ST---TTSCCCCCBCCSEEEEEHHHHHSCGG-GCEEEEEECCHHHHHHHHH------H
T ss_pred --HHHHhhcCCCEEEEeCCCC-CC---CCCccccCCCCeEEEEechhhcCCCc-cceEEEEecCHHHHHHHHH------H
Confidence 3444 66 9999999996 22 111111 1121112237899876 34 89999997 8888887765 2
Q ss_pred cccCCCCCCHHHHHHHHHHHHHHh---------c---ccHHHHHHHHHHHHHHHHHcccCCCceeee-------------
Q psy8199 523 LHSHSYSGNPLACCAALATLEIFN---------K---DNILQRISQDMKKITKALTSLITHPKIINF------------- 577 (965)
Q Consensus 523 ~~~~t~~~~~~~~aaa~a~L~~~~---------~---~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v------------- 577 (965)
....+++.+++++.++.++|+... + +...+.++++.+++.+.|+++ +++...
T Consensus 244 ~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---~~~~~~~p~~~~~~f~~~~ 320 (391)
T 3bwn_A 244 IIVNSIGVSKESQVRTAKILNVLKETCKSESESENFFKYGREMMKNRWEKLREVVKES---DAFTLPKYPEAFCNYFGKS 320 (391)
T ss_dssp HHHHHSSCCHHHHHHHHHHHHHHHHHTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHTC---SSEECCCCCCEEETTTTEE
T ss_pred hcccccCCCHHHHHHHHHHHhCcchhccccccHHHHHHHHHHHHHHHHHHHHHHHHhC---CCcccccCCcccccccccc
Confidence 222346678999999999997532 1 224555666667777777654 333221
Q ss_pred -eceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec------CCEEEEeCCcccCHHHHHHHHHhhhcccc
Q psy8199 578 -RQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI------GNTVYLMPPYILNKNEIQHMTSAIFQTFN 646 (965)
Q Consensus 578 -~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~------~~~lR~~p~~~~t~~~i~~~~~~l~~~~~ 646 (965)
+..|+++.+.+. + . ..+.+.+.++||.+.|+ .+++||+.. .++++++++++++.+.+.
T Consensus 321 ~~~~g~~~~~~~~--~----~---~~~~~~l~~~gV~v~pg~~fg~~~~~iRis~~--~~~e~i~~~~~~L~~~~~ 385 (391)
T 3bwn_A 321 LESYPAFAWLGTK--E----E---TDLVSELRRHKVMSRAGERCGSDKKHVRVSML--SREDVFNVFLERLANMKL 385 (391)
T ss_dssp ECCCCSEEEEEES--S----S---CCHHHHHHHTTEECEEGGGGTCCTTEEEEESC--SCHHHHHHHHHHHHSCC-
T ss_pred CCCcceEEEecCC--c----H---HHHHHHHHHCCEEEccCCCCCCCCCEEEEEec--CCHHHHHHHHHHHHHHHH
Confidence 223445666663 1 1 13446677899999984 368999954 588999999999987654
|
| >4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=3.7e-13 Score=156.06 Aligned_cols=307 Identities=12% Similarity=0.019 Sum_probs=179.4
Q ss_pred HHHHHHHHHHHhhcCCCC----------CeEEEcCChhHHHHHHHHHHHHHHHhc----CC-------CCceEEEEEcCC
Q psy8199 297 KPVIKLSEKLSSLTQYKL----------GHCFYGSDGASAVEVALKMSFHYWYNK----GF-------LNKKKFICLQNS 355 (965)
Q Consensus 297 ~~~~~la~~l~~~~~~~~----------~~v~~~~sGseA~~~Al~~a~~~~~~~----g~-------~~~~~vi~~~~~ 355 (965)
+...+++++++++++.+. ...+|++|||+||..|+.++|.....+ +. .++..|++.+ .
T Consensus 118 ~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~v~~s~-~ 196 (481)
T 4e1o_A 118 ELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLNARLVAYASD-Q 196 (481)
T ss_dssp HHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHTTEEEEEET-T
T ss_pred HHHHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHHHHHHHHhhhcCcccccccccCCeEEEEcC-c
Confidence 344556666777775332 267899999999999999998753211 10 1234455544 4
Q ss_pred ccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhC---CCcEEEEEEccccc
Q psy8199 356 YHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKN---HNKIAAIIIEPLVQ 432 (965)
Q Consensus 356 yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~---~~~~aaii~ep~v~ 432 (965)
.|.+...+....+ ..++.+|.... +. .|+++|+++|++. +....+|++.- ..
T Consensus 197 ~H~s~~~~~~~~g------------~~~~~v~~~~~-~~-----------~d~~~Le~~i~~~~~~g~~~~~vv~~~-~~ 251 (481)
T 4e1o_A 197 AHSSVEKAGLISL------------VKMKFLPVDDN-FS-----------LRGEALQKAIEEDKQRGLVPVFVCATL-GT 251 (481)
T ss_dssp SCHHHHHHHHHHT------------CEEEEECCCTT-SC-----------CCHHHHHHHHHHHHHTTCEEEEEEEEB-SC
T ss_pred chHHHHHHHHhCC------------CceEEEEcCCC-Cc-----------CCHHHHHHHHHHHHhCCCCcEEEEEec-CC
Confidence 4444332222222 23445554322 11 3789999998653 12244455554 57
Q ss_pred cCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCC-Ccceeee--ccccCCCcccceeeeecHH-
Q psy8199 433 CAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEI-WPDFLCL--SKGITGGYLPLSLVMTTDK- 508 (965)
Q Consensus 433 ~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~-~pDivt~--sK~l~gG~~pig~v~~~~~- 508 (965)
+++|.+.| +++|.++|++||+++++|++|.|+...+..+.....|+ ..|.+++ .|.+++. ...|+++.+++
T Consensus 252 t~~G~id~----l~~I~~la~~~~~~lhvDaA~g~~~~~~~~~~~~~~gi~~aDsi~~~~hK~l~~p-~g~g~l~~~~~~ 326 (481)
T 4e1o_A 252 TGVCAFDC----LSELGPICAREGLWLHIDAAYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVH-FDCTGFWVKDKY 326 (481)
T ss_dssp TTTCCBCC----HHHHHHHHHHHTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCC-SSCEEEEESBHH
T ss_pred CCCcCcCC----HHHHHHHHHHcCCeEEeehhhHHHHHhChhhHHHhcCcccCCEEEEChHHhcCCC-CceEEEEEeCHH
Confidence 78898877 99999999999999999999976422222222222344 3588876 5877664 46677776543
Q ss_pred HH-HhhhccCCccccc---------------ccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcccCCC
Q psy8199 509 IY-NSIYYKNNINIFL---------------HSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHP 572 (965)
Q Consensus 509 i~-~~~~~~~~~~~~~---------------~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~ 572 (965)
.. +.+... ..+. ...+.....+.+.+++..+..-.-++..++..++.+++.+.|+++ |
T Consensus 327 ~l~~~~~~~---~~yl~~~~~~~~~~~~~~~~~~~r~~~~l~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~---~ 400 (481)
T 4e1o_A 327 KLQQTFSVN---PIYLRHANSGVATDFMHWQIPLSRRFRSVKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRND---P 400 (481)
T ss_dssp HHHTTTCCC---CGGGCCTTTTTSCCGGGGSSSSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---T
T ss_pred HHHHHhcCC---chhccCcccCCCCCcccccccCCCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcC---C
Confidence 32 222110 0011 011111234555555554432112345677778888888888765 4
Q ss_pred ceeee-eceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcE-Eee---cC-CEEEEeCC-cccCHHHHHHHHHhhhccc
Q psy8199 573 KIINF-RQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELL-LRP---IG-NTVYLMPP-YILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 573 ~i~~v-~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~-~~~---~~-~~lR~~p~-~~~t~~~i~~~~~~l~~~~ 645 (965)
++..+ .....++.+.+. .. ......+.+.|.++|++ +.| .+ ..+|++.. ...++++++++++++.+..
T Consensus 401 g~~~~~~~~~~~v~f~~~-~~----~~~~~~l~~~L~~~g~~~~~~~~~~g~~~lR~~~~~~~tt~~di~~~~~~i~~~~ 475 (481)
T 4e1o_A 401 SFEIPAKRHLGLVVFRLK-GP----NSLTENVLKEIAKAGRLFLIPATIQDKLIIRFTVTSQFTTRDDILRDWNLIRDAA 475 (481)
T ss_dssp TEECCSCCCSSEEEEEES-SC----HHHHHHHHHHHHHHCSSBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred CeEEecCCceeEEEEEeC-Cc----hHHHHHHHHHHHhCCeEEEEeeEECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 55433 234456666653 11 22345788888888843 333 22 47999955 3458999999999887644
|
| >2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=8e-14 Score=158.01 Aligned_cols=310 Identities=10% Similarity=0.064 Sum_probs=185.0
Q ss_pred CCHHHHHHHHHHHhhc-cccccCCCCcHHHHHHHHHHHhhcCCC-CCeEEE-cCChhHHHHHHHHHHHHHHHhcCCCCce
Q psy8199 271 SNSYINKALKNQLNKL-EHVMLSNLTHKPVIKLSEKLSSLTQYK-LGHCFY-GSDGASAVEVALKMSFHYWYNKGFLNKK 347 (965)
Q Consensus 271 ~~p~v~~av~~~~~~~-~~~~~~~~~~~~~~~la~~l~~~~~~~-~~~v~~-~~sGseA~~~Al~~a~~~~~~~g~~~~~ 347 (965)
.+|+|++|+.++.... ...+......+...++.+++++.++.. .++++| ++||++|++.+++.+.. ++
T Consensus 51 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~i~~~t~g~t~al~~~~~~l~~--------~g- 121 (398)
T 2fyf_A 51 VRLEQLQTLTTTAAALFGTSHRQAPVKNLVGRVRSGLAELFSLPDGYEVILGNGGATAFWDAAAFGLID--------KR- 121 (398)
T ss_dssp CCHHHHHGGGTTTTTTTTSCTTSHHHHHHHHHHHHHHHHHTTCCTTCEEEEEETCHHHHHHHHHHHTCS--------SC-
T ss_pred CCHHHHHHHhhcCCCccCcCcCCHHHHHHHHHHHHHHHHHhCCCCCceEEEeCCchhHHHHHHHHHhcC--------CC-
Confidence 5789999887631111 101111011234678999999999765 358998 99999999999987631 22
Q ss_pred EEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEE
Q psy8199 348 KFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIII 427 (965)
Q Consensus 348 ~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ 427 (965)
++....++|+.......... +....+..++.+... .. +. + + ..++.+|++
T Consensus 122 -v~~v~~~~~~~~~~~~~~~~---------~~g~~~~~v~~~~g~-~~-----------~~-~----i---~~~~~~v~~ 171 (398)
T 2fyf_A 122 -SLHLTYGEFSAKFASAVSKN---------PFVGEPIIITSDPGS-AP-----------EP-Q----T---DPSVDVIAW 171 (398)
T ss_dssp -EEEEECSHHHHHHHHHHHHC---------TTSCCCEEEECCTTC-CC-----------CC-C----C---CTTCSEEEE
T ss_pred -eEEEeCCHHHHHHHHHHHHh---------CCCCceEEEecCCCC-CC-----------Cc-c----c---cCCCCEEEE
Confidence 23335566653211111000 001123444443111 00 00 0 2 234556666
Q ss_pred ccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcceeee--ccccCCCcccceeeee
Q psy8199 428 EPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCL--SKGITGGYLPLSLVMT 505 (965)
Q Consensus 428 ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~--sK~l~gG~~pig~v~~ 505 (965)
.. ++|++|.+.+ +++|.++ +|+++|+||+|+.+... .... .+|++++ +|.+++++ .+|++++
T Consensus 172 ~~-~~nptG~~~~----~~~i~~~---~~~~vivD~a~~~~~~~---~~~~----~~di~~~s~sK~~~~~g-g~g~l~~ 235 (398)
T 2fyf_A 172 AH-NETSTGVAVA----VRRPEGS---DDALVVIDATSGAGGLP---VDIA----ETDAYYFAPQKNFASDG-GLWLAIM 235 (398)
T ss_dssp ES-EETTTTEECC----CCCCTTC---C-CEEEEECTTTTTTSC---CCGG----GCSEEEECTTSTTCSCS-SEEEEEE
T ss_pred eC-cCCCcceecc----hHHhhhh---cCCeEEEEeccccCCcc---cCcc----cCcEEEEecCcccCCCC-ceEEEEE
Confidence 65 6999999887 3334333 89999999999754321 1111 2688764 59887753 5899999
Q ss_pred cHHHHHhhhcc---CC-ccccc----------ccCCC-CCCHHHHHHHHHHHHHHhcc----cHHHHHHHHHHHHHHHHH
Q psy8199 506 TDKIYNSIYYK---NN-INIFL----------HSHSY-SGNPLACCAALATLEIFNKD----NILQRISQDMKKITKALT 566 (965)
Q Consensus 506 ~~~i~~~~~~~---~~-~~~~~----------~~~t~-~~~~~~~aaa~a~L~~~~~~----~~~~~~~~~~~~l~~~L~ 566 (965)
++++++.+..- +. ..++. .+.++ +.+..+++++.++|+.+.+. ...++.+++.+++.+.|+
T Consensus 236 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~ 315 (398)
T 2fyf_A 236 SPAALSRIEAIAATGRWVPDFLSLPIAVENSLKNQTYNTPAIATLALLAEQIDWLVGNGGLDWAVKRTADSSQRLYSWAQ 315 (398)
T ss_dssp CHHHHHHHHHHHHTTCCCCGGGCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHhhcccccCCCCCcEEehHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHH
Confidence 99988765310 00 00000 12233 45667777888888876543 356677778888888887
Q ss_pred cccCCCceeee---e-ceeE-EEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec-----CCEEEEeCCcccCHHHHHH
Q psy8199 567 SLITHPKIINF---R-QKGM-IWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-----GNTVYLMPPYILNKNEIQH 636 (965)
Q Consensus 567 ~l~~~~~i~~v---~-g~G~-~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-----~~~lR~~p~~~~t~~~i~~ 636 (965)
++ +++... + +.+. ++.+.+. ++ .....+.+.|.++||.++++ ++++|+++....+++++++
T Consensus 316 ~~---~g~~~~~~~~~~~~~~~~~~~~~--~~----~~~~~l~~~L~~~gI~v~~g~~~~~~~~iRis~~~~~t~e~i~~ 386 (398)
T 2fyf_A 316 ER---PYTTPFVTDPGLRSQVVGTIDFV--DD----VDAGTVAKILRANGIVDTEPYRKLGRNQLRVAMFPAVEPDDVSA 386 (398)
T ss_dssp HS---TTEEESCCSGGGBCSSEEEEEEC--TT----SCHHHHHHHHHHTTCBCCSCCTTTCSSEEEEECCTTSCHHHHHH
T ss_pred Hc---CCceeccCChhhcCCcEEEEECC--CC----CCHHHHHHHHHHCCcEEecCcccCCCCEEEEEecCCCCHHHHHH
Confidence 64 344433 1 2344 7777763 11 11346788899999999763 3689999888889999999
Q ss_pred HHHhhhcc
Q psy8199 637 MTSAIFQT 644 (965)
Q Consensus 637 ~~~~l~~~ 644 (965)
+++++.+.
T Consensus 387 ~~~~l~~~ 394 (398)
T 2fyf_A 387 LTECVDWV 394 (398)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988754
|
| >1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=6.5e-13 Score=154.65 Aligned_cols=332 Identities=11% Similarity=0.009 Sum_probs=185.2
Q ss_pred HHHHHHHHHhhcc-ccccCCCCcHHHHHHHHHHHhhcCCCC---------CeEEEcCChhHHHHHHHHHHHHHHHh----
Q psy8199 275 INKALKNQLNKLE-HVMLSNLTHKPVIKLSEKLSSLTQYKL---------GHCFYGSDGASAVEVALKMSFHYWYN---- 340 (965)
Q Consensus 275 v~~av~~~~~~~~-~~~~~~~~~~~~~~la~~l~~~~~~~~---------~~v~~~~sGseA~~~Al~~a~~~~~~---- 340 (965)
+.+++...++... ++..+....+...+++++++++++... ..++|++|||+||..|+..++.....
T Consensus 90 ~~~~~~~~~n~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~~~~~~~~~~ 169 (486)
T 1js3_A 90 LADMLCGAIGCIGFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQA 169 (486)
T ss_dssp HHHHHHHHHCCCCSSGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcCccccccChhHHHHHHHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhhhhc
Confidence 5566666554321 111111123334466677788876442 35899999999999999988753211
Q ss_pred c-CC------CCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHH
Q psy8199 341 K-GF------LNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEI 413 (965)
Q Consensus 341 ~-g~------~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~ 413 (965)
. |. .++..|++.+.+|+... .+....| .+++.+|... .+. .|+++|++
T Consensus 170 ~~gd~~~~~~~~~~~v~~s~~~h~s~~-~~~~~~G------------~~v~~v~~d~-~~~-----------~d~~~L~~ 224 (486)
T 1js3_A 170 ASPGLTQGAVLEKLVAYASDQAHSSVE-RAGLIGG------------VKLKAIPSDG-KFA-----------MRASALQE 224 (486)
T ss_dssp HSTTCCHHHHHHHEEEEEETTCCHHHH-HHHHHHT------------CEEEEECCCT-TSC-----------CCHHHHHH
T ss_pred cCccchhcccCCCEEEEECCCCcHHHH-HHHHhCC------------CceEEeecCC-CCC-----------CCHHHHHH
Confidence 0 10 01123556666654432 1111111 2345555432 111 37899999
Q ss_pred HHHhCC---CcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCC-Ccceeee
Q psy8199 414 LLKKNH---NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEI-WPDFLCL 489 (965)
Q Consensus 414 ~l~~~~---~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~-~pDivt~ 489 (965)
+|++.. ....+|++.. .++++|.+.+ +++|.++|++||+++|+|++|.++......+.....++ ..|.+++
T Consensus 225 ~i~~~~~~g~~p~~vv~~~-~~n~tG~~~~----l~~I~~la~~~~~~lhvD~a~g~~~~~~~~~~~~~~g~~~adsi~~ 299 (486)
T 1js3_A 225 ALERDKAAGLIPFFVVATL-GTTSCCSFDN----LLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNF 299 (486)
T ss_dssp HHHHHHHTTCEEEEEEEEB-SCTTTCCBCC----HHHHHHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEE
T ss_pred HHHHHHhCCCCceEEEEeC-CCCCCCCCCC----HHHHHHHHHHcCCEEEEehhhHHHHHHCHHHHHHhcCccccCeeEE
Confidence 986531 1123444433 4788998877 99999999999999999999976422211111111232 3577765
Q ss_pred --ccccCCCcccceeeeecHH--HHHhhhccC------Cc-----ccccc---cCCCCCCHHHHHHHHHHHHHHhcccHH
Q psy8199 490 --SKGITGGYLPLSLVMTTDK--IYNSIYYKN------NI-----NIFLH---SHSYSGNPLACCAALATLEIFNKDNIL 551 (965)
Q Consensus 490 --sK~l~gG~~pig~v~~~~~--i~~~~~~~~------~~-----~~~~~---~~t~~~~~~~~aaa~a~L~~~~~~~~~ 551 (965)
+|.++.. +.+|+++++++ +.+.+.... .. ..+.. ..+.....+++.+++..+..-.-++..
T Consensus 300 ~~hK~~~~p-~~~G~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~~~~~~~al~~~g~~g~~~~~ 378 (486)
T 1js3_A 300 NPHKWLLVN-FDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYI 378 (486)
T ss_dssp CHHHHSSCC-SSCEEEEESCHHHHHGGGC------------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhcCCC-cceEEEEEeCHHHHHHHhcCCchhhCCCcccccCCCCccccCCCCCCchhHHHHHHHHHHHhHHHHHHHH
Confidence 6877665 68898888654 234442100 00 00000 011122345555555444211113356
Q ss_pred HHHHHHHHHHHHHHHcccCCCceeee-eceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEe-ec----CCEEEEeC
Q psy8199 552 QRISQDMKKITKALTSLITHPKIINF-RQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLR-PI----GNTVYLMP 625 (965)
Q Consensus 552 ~~~~~~~~~l~~~L~~l~~~~~i~~v-~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~-~~----~~~lR~~p 625 (965)
++..++.+++.+.|+++ |++..+ .+.+.++.+.+. .. ......+.+.|.++|++.. +. .+.+|++.
T Consensus 379 ~~~~~~a~~l~~~L~~~---~~~~~~~~~~~~~v~f~~~-~~----~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~ 450 (486)
T 1js3_A 379 RKHVQLSHEFEAFVLQD---PRFEVCAEVTLGLVCFRLK-GS----DGLNEALLERINSARKIHLVPCRLRGQFVLRFAI 450 (486)
T ss_dssp HHHHHHHHHHHHHHHHC---TTEEECSCCCSSEEEEEES-SC----HHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEEC
T ss_pred HHHHHHHHHHHHHHhcC---CCeEEeCCCceeEEEEEec-Ch----HHHHHHHHHHHHhcCCEEEEEEEECCEEEEEEEe
Confidence 66777788888888664 455433 245666666653 11 1234567888888886543 21 25899994
Q ss_pred -CcccCHHHHHHHHHhhhccc
Q psy8199 626 -PYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 626 -~~~~t~~~i~~~~~~l~~~~ 645 (965)
....++++++++++++.+..
T Consensus 451 ~~~~~t~~di~~~~~~l~~~~ 471 (486)
T 1js3_A 451 CSRKVESGHVRLAWEHIRGLA 471 (486)
T ss_dssp CCTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHH
Confidence 44468999999999887543
|
| >3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=2.6e-13 Score=152.72 Aligned_cols=294 Identities=9% Similarity=0.016 Sum_probs=173.8
Q ss_pred CCHHHHHHHHHHHhh---ccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEE---cCChhHHHHHHHHHHHHHHHhcCCC
Q psy8199 271 SNSYINKALKNQLNK---LEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFY---GSDGASAVEVALKMSFHYWYNKGFL 344 (965)
Q Consensus 271 ~~p~v~~av~~~~~~---~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~---~~sGseA~~~Al~~a~~~~~~~g~~ 344 (965)
|+++|++|+.++.-. ........+......+|.++++++++ .+..++ ++||++|+..++.... .
T Consensus 30 n~~~vl~a~~~~~~~~~~~~~~~~~~y~~~~~~~Le~~lA~l~g--~e~alv~p~~~sGt~Ai~~al~all--------~ 99 (409)
T 3jzl_A 30 NQAKVLDAFQENKVSDFHFHPSTGYGYDDEGRDTLERVYATVFK--TEAALVRPQIISGTHAISTVLFGIL--------R 99 (409)
T ss_dssp HHHHHHHHHHHTTCCGGGGCCCCTTCTTCHHHHHHHHHHHHHHT--CSEEEEETTSCSHHHHHHHHHHHHC--------C
T ss_pred hHHHHHHHHHHhhhhhhccCCCcCCCCChhHHHHHHHHHHHHhC--CCcEEEECCCccHHHHHHHHHHHhc--------C
Confidence 357788888775421 11122234556678889999999995 455666 8999999999988663 2
Q ss_pred CceEEEEEc-CCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEE
Q psy8199 345 NKKKFICLQ-NSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIA 423 (965)
Q Consensus 345 ~~~~vi~~~-~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a 423 (965)
++++|++.+ +.|++... .....+. ...........+.+++.... +. .|+++|+++++ +++.
T Consensus 100 ~GD~Vl~~~~~~y~~~~~-~~~~~g~--~~~~l~~~G~~~~~v~~~~~-g~-----------~d~e~l~~ai~---~~tk 161 (409)
T 3jzl_A 100 PDDELLYITGQPYDTLEE-IVGIRKQ--GQGSLKDFHIGYSSVPLLEN-GD-----------VDFPRIAKKMT---PKTK 161 (409)
T ss_dssp TTCEEEECSSSCCTTHHH-HHTSSSS--SSSCTGGGTCEEEECCCCTT-SC-----------CCHHHHHHHCC---TTEE
T ss_pred CCCEEEEeCCCCcHhHHH-HHhcccc--hhhHHHHcCCEEEEeCCCCC-CC-----------cCHHHHHHhcc---CCCe
Confidence 568888888 67766521 1111110 00011111223344443221 11 37888888875 3577
Q ss_pred EEEEccc---cccCCCcccCChHHHHHHHHHHHh--cCCeEEEeccccCCCcccccccccccCCCccee--eeccccCCC
Q psy8199 424 AIIIEPL---VQCAGGMIMYDSIYLKLVREICNN--YNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL--CLSKGITGG 496 (965)
Q Consensus 424 aii~ep~---v~~~~G~~~~~~~~l~~l~~l~~~--~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDiv--t~sK~l~gG 496 (965)
+|++++. ++|++|.+.+ +++|.++|++ ||+++|+||+|..+. .+ .+......|++ +++|.++|+
T Consensus 162 lV~i~~s~g~p~nptg~v~~----l~~I~~la~~~~~~~~livD~a~~~~~-~~----~~p~~~g~Div~~S~sK~lgg~ 232 (409)
T 3jzl_A 162 MIGIQRSRGYADRPSFTIEK----IKEMIVFVKNINPEVIVFVDNCYGEFV-EY----QEPPEVGADIIAGSLIKNPGGG 232 (409)
T ss_dssp EEEEECSCTTSSSCCCCHHH----HHHHHHHHHHHCTTCEEEEECTTCTTT-SS----CCSGGGTCSEEEEETTSGGGTT
T ss_pred EEEEECCCCCCCCCcCcccc----HHHHHHHHHhhCCCCEEEEeCCccccc-cc----CCccccCCeEEEECccccCCcc
Confidence 7777741 2677887765 9999999999 999999999986431 11 11112345777 578999876
Q ss_pred ccc-ceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcccC--CCc
Q psy8199 497 YLP-LSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLIT--HPK 573 (965)
Q Consensus 497 ~~p-ig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~~--~~~ 573 (965)
..+ .|++++++++++.+...... +. .+.+.+..+..+.+++..|+.+ +...++..++..++.+.|+++.. +|.
T Consensus 233 ~~~~GG~v~~~~~li~~l~~~~~~-~~-~g~~~g~~~~~~~~~l~gl~~~--~~r~~~~~~~a~~la~~L~~~g~~v~p~ 308 (409)
T 3jzl_A 233 LAKTGGYIAGKEALVDLCGYRLTT-PG-IGREAGASLYSLLEMYQGFFLA--PHVTAQAIKGARFTAAMLAEFGVEADPV 308 (409)
T ss_dssp TCSSCEEEEECHHHHHHHHHHHSC-TT-TGGGCCCCTTCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTTCEEESC
T ss_pred CCceEEEEEeCHHHHHHHHHHhcc-cc-ccccccccHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHHhCCCcccCC
Confidence 434 47888999998887641000 00 1122222222234455555443 33567778888889998887611 111
Q ss_pred eeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCc
Q psy8199 574 IINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNEL 612 (965)
Q Consensus 574 i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi 612 (965)
..-++..+++.+.+. + ...+.++++.|.....
T Consensus 309 -~~~~~~~~i~~i~l~--~----~~~~~~~~~~L~~~~~ 340 (409)
T 3jzl_A 309 -WDAPRTDLIQSVSFH--N----KEKMVAFAQAIQAASP 340 (409)
T ss_dssp -TTSCCSSSCCEEECS--C----HHHHHHHHHHHHHTSS
T ss_pred -CCCCCccEEEEEEeC--C----HHHHHHHHHHHHhcCc
Confidence 111222337777764 2 2334567788877753
|
| >3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6 | Back alignment and structure |
|---|
Probab=99.51 E-value=7.5e-13 Score=153.01 Aligned_cols=308 Identities=11% Similarity=0.010 Sum_probs=174.1
Q ss_pred HHHHHHHHHHhhcCCCC---------CeEEEcCChhHHHHHHHHHHHHHHHhc----CC-------CCceEEEEEcCCcc
Q psy8199 298 PVIKLSEKLSSLTQYKL---------GHCFYGSDGASAVEVALKMSFHYWYNK----GF-------LNKKKFICLQNSYH 357 (965)
Q Consensus 298 ~~~~la~~l~~~~~~~~---------~~v~~~~sGseA~~~Al~~a~~~~~~~----g~-------~~~~~vi~~~~~yH 357 (965)
...++.++++++++.+. ...+|++|||+||..|+.++|.....+ |. .++..|++.+ ..|
T Consensus 114 lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~vi~s~-~~H 192 (475)
T 3k40_A 114 LEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLVGYCSD-QAH 192 (475)
T ss_dssp HHHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHEEEEEET-TSC
T ss_pred HHHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHHhhccCcccccccccCCeEEEECC-Cch
Confidence 34455566778775432 268999999999999999998754211 10 1233455544 444
Q ss_pred CCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhC---CCcEEEEEEccccccC
Q psy8199 358 GETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKN---HNKIAAIIIEPLVQCA 434 (965)
Q Consensus 358 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~---~~~~aaii~ep~v~~~ 434 (965)
-+...+....| ..+..+|.... + .|+++|+++|++. +....+|++.- ..++
T Consensus 193 ~s~~~~~~~~g------------~~~~~v~~d~~-~------------~d~~~L~~~i~~~~~~~~~~~~v~~~~-~~t~ 246 (475)
T 3k40_A 193 SSVERAGLLGG------------VKLRSVQSENH-R------------MRGAALEKAIEQDVAEGLIPFYAVVTL-GTTN 246 (475)
T ss_dssp HHHHHHHHHHT------------CEEEEECCBTT-B------------CCHHHHHHHHHHHHHTTCEEEEEEEEB-SCTT
T ss_pred HHHHHHHHHcC------------CceEEEECCCC-C------------cCHHHHHHHHHHHHHCCCccEEEEEEe-cCCC
Confidence 44333222222 13445554221 1 2788999998753 12234444443 4777
Q ss_pred CCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCC-Ccceeee--ccccCCCcccceeeeecHH-HH
Q psy8199 435 GGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEI-WPDFLCL--SKGITGGYLPLSLVMTTDK-IY 510 (965)
Q Consensus 435 ~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~-~pDivt~--sK~l~gG~~pig~v~~~~~-i~ 510 (965)
+|.+.| +++|.++|++||+++|+|++|.+....+..+.....++ ..|.+++ .|.+++. ...|+++.+++ ..
T Consensus 247 ~G~~~~----l~~I~~la~~~~~~lhvD~A~~~~~~~~~~~~~~~~gi~~~Ds~~~~~hK~l~~p-~g~g~l~~~~~~~l 321 (475)
T 3k40_A 247 SCAFDY----LDECGPVGNKHNLWIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVN-FDCSAMWLKDPSWV 321 (475)
T ss_dssp TCCBCC----HHHHHHHHHHTTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCC-SSCEEEEESSGGGC
T ss_pred CcCcCC----HHHHHHHHHHhCCeEEEeHHhHHHHHhCHhhHHHhcCcccCCEEEECchhccCCC-CceEEEEEeCHHHH
Confidence 898877 99999999999999999999975322222121112243 4688876 5877664 46777777643 22
Q ss_pred -HhhhccC-----Cc-c---cccccCCCCC---CHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcccCCCceeee
Q psy8199 511 -NSIYYKN-----NI-N---IFLHSHSYSG---NPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINF 577 (965)
Q Consensus 511 -~~~~~~~-----~~-~---~~~~~~t~~~---~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v 577 (965)
+.+.... .. . .....+...+ ..+.+.+++..+..-.-++..++..++.+++.+.|+++ |++..+
T Consensus 322 ~~~~~~~~~yl~~~~~~~~~~~~~~~~~~sr~~~~l~l~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~---~g~~l~ 398 (475)
T 3k40_A 322 VNAFNVDPLYLKHDMQGSAPDYRHWQIPLGRRFRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVAD---SRFELA 398 (475)
T ss_dssp ---------------------------CCCGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS---TTEEES
T ss_pred HHHhcCCccccCCCcCCCCCCcccccccCCCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC---CCEEEe
Confidence 2221100 00 0 0000000111 23334444443322112346677778888888888765 455432
Q ss_pred -eceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEE-ee---cC-CEEEEeCC-cccCHHHHHHHHHhhhccc
Q psy8199 578 -RQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLL-RP---IG-NTVYLMPP-YILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 578 -~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~-~~---~~-~~lR~~p~-~~~t~~~i~~~~~~l~~~~ 645 (965)
.....++.+.+. .+ .....++.+.|.++|.+. .| .+ ..+|++.. ...++++++++++++.+..
T Consensus 399 ~~~~~~iv~f~~~-~~----~~~~~~l~~~L~~~g~~~~~~~~~~g~~~lR~~~~~~~tt~~di~~~~~~i~~~~ 468 (475)
T 3k40_A 399 AEINMGLVCFRLK-GS----NERNEALLKRINGRGHIHLVPAKIKDVYFLRMAICSRFTQSEDMEYSWKEVSAAA 468 (475)
T ss_dssp SCCBTTEEEEEES-SC----HHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred cCCceEEEEEEeC-Cc----hHHHHHHHHHHHhCCcEEEEeeEECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 234455666653 11 223457888888888644 32 22 58999954 3458999999999887654
|
| >2z2u_A UPF0026 protein MJ0257; metal binding protein; 2.40A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.7e-13 Score=149.20 Aligned_cols=197 Identities=13% Similarity=0.141 Sum_probs=129.9
Q ss_pred EeEeecc-CCCCCCCCCCCCCCcCCCC-----cccccCCCHHHHHHHHHHHHH---------------------CCCCEE
Q psy8199 683 VLLSIKT-GGCTEDCGYCPQSTHYNTE-----ITATKILSIESVITAAQKAKS---------------------DGATRF 735 (965)
Q Consensus 683 ~~i~~~s-~~C~~~C~fC~~~~~~~~~-----~~~~~~~~~eei~~~~~~~~~---------------------~g~~~i 735 (965)
..+++ | .+|+++|.||..+...... ....+.++++++++++.+..+ ...+.+
T Consensus 53 l~i~~-t~~~Cn~~C~fC~~~~~~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~~~~~~~g~~~v~~~~r~~~~~~~~~i 131 (311)
T 2z2u_A 53 IQCTP-SVIWCQQNCIFCWRVLPRDIGIDISQIKEPKWEEPEVVYEKILAMHKRIIMGYAGVLDRVGEKKFKEALEPKHV 131 (311)
T ss_dssp EEEES-CSSCCSCC----------------CCSCCCCCCCHHHHHHHHHHHHHHHHHGGGGGHHHHCHHHHHHHTSCCEE
T ss_pred EEecc-ChhHHhCcCcccCCCCCCcccccccccCccccCCHHHHHHHHHHHHHHHhhccCCCcCcchhhhhhhccCCCEE
Confidence 45566 7 7999999999855311110 112456899999987765422 124678
Q ss_pred EEeeccCCCCcccHHHHHHHHHHHHhcCcEeEE-ecCCCCHHHHHHHHHhCCCeEeccCCC-CHHHHhcccCC--CCHHH
Q psy8199 736 CMGAAWRELKDRDLDNIENMICEVKKIGLETCL-TLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIIST--RDYEN 811 (965)
Q Consensus 736 ~l~~g~~~~~~~~~~~~~~~~~~i~~~~~~i~~-~~~~~~~e~l~~Lk~aG~~~i~i~~es-~~~~~~~i~~~--~~~~~ 811 (965)
.|++|+.|+.. +.+.++++.+++.++.+.+ ++|.+ ++.++.| |++.+.+++++ +++.++++++. .++++
T Consensus 132 ~~s~gGEPll~---~~l~~li~~~~~~g~~~~l~TNG~~-~~~l~~L---~~~~v~isld~~~~~~~~~i~~~~~~~~~~ 204 (311)
T 2z2u_A 132 AISLSGEPTLY---PYLDELIKIFHKNGFTTFVVSNGIL-TDVIEKI---EPTQLYISLDAYDLDSYRRICGGKKEYWES 204 (311)
T ss_dssp EECSSSCGGGS---TTHHHHHHHHHHTTCEEEEEECSCC-HHHHHHC---CCSEEEEECCCSSTTTC----CCCHHHHHH
T ss_pred EEeCCcCccch---hhHHHHHHHHHHCCCcEEEECCCCC-HHHHHhC---CCCEEEEEeecCCHHHHHHHhCCccchHHH
Confidence 88855666554 3477777777777777655 44555 5555554 89999999999 89999999987 67999
Q ss_pred HHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCC--CCCCCCCHHHHHHHHHHH
Q psy8199 812 RLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPL--YGSSILDPLEFIRTIAVA 889 (965)
Q Consensus 812 ~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l--~~~~~~~~~~~~~~ia~~ 889 (965)
.+++++.+++.| ++...+++..|.+. ++.+.++++++++ ++.+.+.+|+|.++++. ....+++.+++.+....+
T Consensus 205 v~~~i~~l~~~g-~v~i~~~~~~g~n~-~~~~~~~~~~~~~--~~~i~l~~~~p~g~~~~~~~~~~~~~~~e~~~~~~~l 280 (311)
T 2z2u_A 205 ILNTLDILKEKK-RTCIRTTLIRGYND-DILKFVELYERAD--VHFIELKSYMHVGYSQKRLKKEDMLQHDEILKLAKML 280 (311)
T ss_dssp HHHHHHHHTTSS-SEEEEEEECTTTTC-CGGGTHHHHHHHT--CSEEEEEECC------------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CEEEEEEEECCcch-hHHHHHHHHHHcC--CCEEEEEeeEEccccccccccccCCCHHHHHHHHHHH
Confidence 999999999999 87777766556666 8889999999999 89999999999988763 234567899998888877
Q ss_pred HH
Q psy8199 890 RI 891 (965)
Q Consensus 890 R~ 891 (965)
+.
T Consensus 281 ~~ 282 (311)
T 2z2u_A 281 DE 282 (311)
T ss_dssp HT
T ss_pred HH
Confidence 75
|
| >1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=9.6e-13 Score=151.01 Aligned_cols=291 Identities=10% Similarity=0.059 Sum_probs=167.7
Q ss_pred cHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccch
Q psy8199 296 HKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEI 375 (965)
Q Consensus 296 ~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~ 375 (965)
.+...++.+.++++++.+.+++.+++||+.|+++++.+++ . .++++|++.++.|+.+. ..+...
T Consensus 107 ~~~~~~~~~~la~~~g~~~~~i~~~~g~taa~ea~~~a~~-~------~~gd~Viv~~~~h~s~~-~~~~~~-------- 170 (438)
T 1wyu_A 107 LQATFEYQTMIAELAGLEIANASMYDGATALAEGVLLALR-E------TGRMGVLVSQGVHPEYR-AVLRAY-------- 170 (438)
T ss_dssp HHHHHHHHHHHHHHHTSSEECSCBSSHHHHHHHHHHHHHH-H------HTCCEEEEETTSCHHHH-HHHHHH--------
T ss_pred HHHHHHHHHHHHHHhCCCccceEEeCcHHHHHHHHHHHHh-c------CCCCEEEEcCccCHhHH-HHHHHH--------
Confidence 3556789999999997555567899999955555544332 2 25678888887765542 111100
Q ss_pred hcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhc
Q psy8199 376 YTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNY 455 (965)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~ 455 (965)
.......++.++... +.. |+++ + .+++++|++.. + |++|.+.+ +++|.++|++|
T Consensus 171 a~~~G~~v~~v~~~~--~~~-----------d~~~----i---~~~t~~v~i~~-p-n~tG~~~~----l~~i~~la~~~ 224 (438)
T 1wyu_A 171 LEAVGAKLLTLPLEG--GRT-----------PLPE----V---GEEVGAVVVQN-P-NFLGALED----LGPFAEAAHGA 224 (438)
T ss_dssp HHHTTCEEEEECCBT--TBC-----------CCCC----C---CTTEEEEEEES-S-CTTSBCCC----HHHHHHHHHHT
T ss_pred HHHCCCEEEEEcCcC--Ccc-----------CHHH----h---CCCeEEEEEEC-C-CCCeEEec----HHHHHHHHHHc
Confidence 000111234444311 111 1222 2 24678888887 6 88998886 99999999999
Q ss_pred CCeEEEecc-ccCCCcccccccccccCCCcceeeec-cccC-----CCcccceeeeecHHHHHhhhcc--C------Ccc
Q psy8199 456 NIHLIADEI-AVGCGRTGKFFACEHAEIWPDFLCLS-KGIT-----GGYLPLSLVMTTDKIYNSIYYK--N------NIN 520 (965)
Q Consensus 456 g~llI~DEv-~tg~gr~G~~~~~~~~~~~pDivt~s-K~l~-----gG~~pig~v~~~~~i~~~~~~~--~------~~~ 520 (965)
|+++|+|-- ++ +|..... ..+ .+|++++| |.++ +| ..+|++++++++++.+... + ...
T Consensus 225 g~~vivd~d~~a-~g~~~~~---~~~--g~D~~~~s~kk~~~~~~~~G-p~~G~l~~~~~~~~~l~~~~~g~~~~~~~~~ 297 (438)
T 1wyu_A 225 GALFVAVADPLS-LGVLKPP---GAY--GADIAVGDGQSLGLPMGFGG-PHFGFLATKKAFVRQLPGRLVSETVDVEGRR 297 (438)
T ss_dssp TCEEEEECCTTG-GGTBCCH---HHH--TCSEEEEECTTTTCCCGGGC-SCCEEEEECGGGGGGCCSCCEEEEEBTTSCE
T ss_pred CCEEEEEechhh-ccCcCCC---ccC--CCCEEEECCcccCCCccCCC-CCeeEEEEcHHHHHhCCCceeccccccCCCc
Confidence 999995522 21 3221111 112 37888874 6432 23 4789999999887765210 0 000
Q ss_pred cc------------cccCCCCC---CHHHHHHHHHHHHHHhc---ccHHHHHHHHHHHHHHHHHcccCCCceeeeeceeE
Q psy8199 521 IF------------LHSHSYSG---NPLACCAALATLEIFNK---DNILQRISQDMKKITKALTSLITHPKIINFRQKGM 582 (965)
Q Consensus 521 ~~------------~~~~t~~~---~~~~~aaa~a~L~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~G~ 582 (965)
.+ ...+|.+. +.++..++...+..+.. ++..++.+++.+++.++|+++ +++........
T Consensus 298 ~~~~~l~~~~~~~r~~~~t~~~~~~~~~~a~~aa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~---~g~~~~~~~~~ 374 (438)
T 1wyu_A 298 GFILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHALLLEV---PGVRPFTPKPF 374 (438)
T ss_dssp EEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS---TTCEECSCSSB
T ss_pred ceeeeccccccccchhcccCCccchHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcC---CCeEECCCCCe
Confidence 00 01233332 33333222233444432 235666777788888877664 34432222223
Q ss_pred EEEEEEeecCccchhhHHHHHHHHHHHcCcEE--eec----CCEEEEeCCcccCHHHHHHHHHhhhcc
Q psy8199 583 IWAFDVIIEDPEQIETFSKKFFVAALKNELLL--RPI----GNTVYLMPPYILNKNEIQHMTSAIFQT 644 (965)
Q Consensus 583 ~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~--~~~----~~~lR~~p~~~~t~~~i~~~~~~l~~~ 644 (965)
+..+.+. .+ .....+.+.|.++||.+ .+. .+.+|+++....+.++++++++++.+.
T Consensus 375 ~~~~~~~--~~----~~~~~~~~~L~~~gi~v~~~~~~~~~~~~lRis~~~~~t~edi~~~~~~l~~~ 436 (438)
T 1wyu_A 375 FNEFALA--LP----KDPEAVRRALAERGFHGATPVPREYGENLALFAATELHEEEDLLALREALKEV 436 (438)
T ss_dssp CSEEEEE--CS----SCHHHHHHHHHHTTCCCCEECCTTSCSSEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred EEEEEEe--CC----CCHHHHHHHHHHCCceeccccccccCCCeEEEEecccCCHHHHHHHHHHHHHH
Confidence 3223332 11 11346888899999998 442 479999998889999999999988653
|
| >3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.45 E-value=4.2e-12 Score=143.22 Aligned_cols=295 Identities=12% Similarity=0.029 Sum_probs=170.3
Q ss_pred CCHHHHHHHHHHHhhc---cccccCCCCcHHHHHHHHHHHhhcCCCCCeEEE---cCChhHHHHHHHHHHHHHHHhcCCC
Q psy8199 271 SNSYINKALKNQLNKL---EHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFY---GSDGASAVEVALKMSFHYWYNKGFL 344 (965)
Q Consensus 271 ~~p~v~~av~~~~~~~---~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~---~~sGseA~~~Al~~a~~~~~~~g~~ 344 (965)
+.++|++|+.+..... .......+......+|.++++++++ .+..++ ++||++|+..++.... .
T Consensus 45 n~~~Vl~a~~~~~~~~~~~~~~~gy~Y~~~g~~~Le~~lA~l~g--~e~alv~p~~~sGt~A~~~al~all--------~ 114 (427)
T 3hvy_A 45 NQLKVLKAFQEERISESHFTNSSGYGYNDIGRDSLDRVYANIFN--TESAFVRPHFVNGTHAIGAALFGNL--------R 114 (427)
T ss_dssp HHHHHHHHHHHTTCCGGGSCCCCTTCTTCHHHHHHHHHHHHHHT--CSEEEEETTCCSHHHHHHHHHHHTC--------C
T ss_pred hHHHHHHHHHHHHHHHHhcccCcCCCCCchhHHHHHHHHHHHhC--CCceEEeCCCCcHHHHHHHHHHHhc--------C
Confidence 3478888887753221 1111123455567889999999995 566666 8999999999988653 3
Q ss_pred CceEEEEEc-CCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEE
Q psy8199 345 NKKKFICLQ-NSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIA 423 (965)
Q Consensus 345 ~~~~vi~~~-~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a 423 (965)
++++|++.+ +.|++..... ..++. .+..........+.+++.+ .+. .|+++|+++++++ +++.
T Consensus 115 pGD~Vl~~~~~~y~~~~~~~-g~~~~-~~~~~l~~~G~~~~~v~~~--~~~-----------~d~e~l~~~i~~~-~~tk 178 (427)
T 3hvy_A 115 PNDTMMSICGMPYDTLHDII-GMDDS-KKVGSLREYGVKYKMVDLK--DGK-----------VDINTVKEELKKD-DSIK 178 (427)
T ss_dssp TTCEEEECSSSCCGGGHHHH-TCCTT-CCSCCTGGGTCEEEECCCB--TTB-----------CCHHHHHHHHHHC-TTEE
T ss_pred CCCEEEEeCCCCchhHHHHh-ccccc-hhhhHHHHcCCEEEEecCC--CCC-----------cCHHHHHHHhhCC-CCCE
Confidence 678899998 7887653110 00000 0000111111223344431 111 3788999998742 3567
Q ss_pred EEEEccc---cccCCCcccCChHHHHHHHHHHHh--cCCeEEEeccccCCCcccccccccccCCCccee--eeccccCCC
Q psy8199 424 AIIIEPL---VQCAGGMIMYDSIYLKLVREICNN--YNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL--CLSKGITGG 496 (965)
Q Consensus 424 aii~ep~---v~~~~G~~~~~~~~l~~l~~l~~~--~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDiv--t~sK~l~gG 496 (965)
+|++++. ++|++|.+.+ +++|.++|++ ||+++|+||+|..+...... .....|++ +++|.++|+
T Consensus 179 lV~i~~s~gyp~nptg~v~d----l~~i~~ia~~~~~g~~livD~a~~~~~~~~~p-----~~~gaDiv~~S~sK~lgg~ 249 (427)
T 3hvy_A 179 LIHIQRSTGYGWRKSLRIAE----IAEIIKSIREVNENVIVFVDNCYGEFVEEKEP-----TDVGADIIAGSLIKNIGGG 249 (427)
T ss_dssp EEEEESSCCSSSSCCCCHHH----HHHHHHHHHHHCSSSEEEEECTTCTTTSSSCG-----GGGTCSEEEEETTSGGGTT
T ss_pred EEEEECCCCCCCCccccHHH----HHHHHHHHHHhCCCCEEEEECCccccccCCCC-----cccCCeEEEECCccccccc
Confidence 7777762 2566666554 9999999999 89999999998643211111 12235776 578999876
Q ss_pred ccc-ceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcccC--CCc
Q psy8199 497 YLP-LSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLIT--HPK 573 (965)
Q Consensus 497 ~~p-ig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~~--~~~ 573 (965)
..+ .|++++++++++.+....... ..+.+.+.++..+..++..|+.+ +...++..++..++.+.|+++.. +|.
T Consensus 250 g~~~GG~i~~~~~li~~l~~~~~~~--~~g~~~~~~~~~a~~~~~gl~~~--~~r~~~~~~~a~~la~~L~~~g~~V~p~ 325 (427)
T 3hvy_A 250 IATTGGYIAGKEEYVTQATFRVTVP--GIGGECGSTFGVMRSLYEGLFMA--PHVTIEAVKGAVFCARIMELAGFDVLPK 325 (427)
T ss_dssp TCCSCEEEEECHHHHHHHHHHHSCT--TTGGGCCCCTTCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTTCEEESC
T ss_pred ccceEEEEEECHHHHHHHHHHhhcC--CcccccCCCHHHHHHHHHhHhHH--HHHHHHHHHHHHHHHHHHHhCCCeecCC
Confidence 434 477888999988876510000 11111222122244444555433 33567778888888888877611 111
Q ss_pred eeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcC
Q psy8199 574 IINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNE 611 (965)
Q Consensus 574 i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~G 611 (965)
..-++..+++.+.+. + .+.+.++++.+....
T Consensus 326 -~~~~~~~li~~~~l~--~----~~~~~~f~~~l~~~~ 356 (427)
T 3hvy_A 326 -YNDKRTDIIQAIKFN--D----EKKLIDFIKGIQTAS 356 (427)
T ss_dssp -TTSCCSSSEEEEECS--S----HHHHHHHHHHHHHTC
T ss_pred -CCCCCceEEEEEeCC--C----HHHHHHHHHHhcccc
Confidence 011122337777664 2 223445667776653
|
| >3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=7.4e-12 Score=141.21 Aligned_cols=294 Identities=12% Similarity=0.066 Sum_probs=169.8
Q ss_pred CHHHHHHHHHHHh--h-ccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEE---cCChhHHHHHHHHHHHHHHHhcCCCC
Q psy8199 272 NSYINKALKNQLN--K-LEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFY---GSDGASAVEVALKMSFHYWYNKGFLN 345 (965)
Q Consensus 272 ~p~v~~av~~~~~--~-~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~---~~sGseA~~~Al~~a~~~~~~~g~~~ 345 (965)
.++|++|+.+..- . ........+......+|.++++++++ .+..++ ++||++|+..++..... +
T Consensus 45 ~~~Vl~A~~~~~~~~~~~~~~~gy~y~~~~~~~Le~~lA~l~g--~e~alv~p~~~sGt~Ai~~al~all~--------p 114 (427)
T 3i16_A 45 QLKVLNAFQEERISEAHFTNSSGYGYGDIGRDSLDAVYARVFN--TESALVRPHFVNGTHALGAALFGNLR--------P 114 (427)
T ss_dssp HHHHHHHHHHTTCCGGGSCCCCTTCTTCHHHHHHHHHHHHHHT--CSEEEEETTCCSHHHHHHHHHHHHCC--------T
T ss_pred HHHHHHHHHHhchhHHhcCCCCCCCCCHHHHHHHHHHHHHHhC--CcceEEeCCCccHHHHHHHHHHHHhC--------C
Confidence 3678888876431 1 11112233555668889999999995 455555 89999999999886632 5
Q ss_pred ceEEEEEc-CCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEE
Q psy8199 346 KKKFICLQ-NSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAA 424 (965)
Q Consensus 346 ~~~vi~~~-~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aa 424 (965)
+++|++.+ +.|++..... ...++.. ..........+.+++.... +. .|+++|+++++++ +++.+
T Consensus 115 GD~Vl~~~~~~y~~~~~~~-g~~~~~~-~~~l~~~G~~~~~v~~~~~-g~-----------~D~e~l~~~l~~~-~~tkl 179 (427)
T 3i16_A 115 GNTMLSVCGEPYDTLHDVI-GITENSN-MGSLKEFGINYKQVDLKED-GK-----------PNLEEIEKVLKED-ESITL 179 (427)
T ss_dssp TCEEEESSSSCCGGGHHHH-TCSCCCS-SCCTGGGTCEEEECCCCTT-SS-----------CCHHHHHHHHHTC-TTEEE
T ss_pred CCEEEEeCCCccHHHHHHH-hccccch-HHHHHHcCCEEEEecCccC-CC-----------cCHHHHHHHhhCC-CCCEE
Confidence 68899988 7776652111 0000000 0001111123344443211 11 3788999998742 35677
Q ss_pred EEEccc---cccCCCcccCChHHHHHHHHHHHh--cCCeEEEeccccCCCcccccccccccCCCccee--eeccccCCCc
Q psy8199 425 IIIEPL---VQCAGGMIMYDSIYLKLVREICNN--YNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL--CLSKGITGGY 497 (965)
Q Consensus 425 ii~ep~---v~~~~G~~~~~~~~l~~l~~l~~~--~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDiv--t~sK~l~gG~ 497 (965)
|++++. ++|++|.+.+ +++|.++|++ ||+++|+||+|..+...... .....|++ +++|.++|+.
T Consensus 180 V~i~~s~~~p~nptg~i~d----l~~i~~la~~~~~g~~livD~a~~~~~~~~~p-----~~~gaDiv~~S~sK~lgg~g 250 (427)
T 3i16_A 180 VHIQRSTGYGWRRALLIED----IKSIVDCVKNIRKDIICFVDNCYGEFMDTKEP-----TDVGADLIAGSLIKNIGGGI 250 (427)
T ss_dssp EEEECSCCSSSSCCCCHHH----HHHHHHHHHHHCTTSEEEEECTTTTTSSSSCG-----GGGTCSEEEEETTSGGGTTT
T ss_pred EEEEcCCCCCCCCcccHHH----HHHHHHHHHHhCCCCEEEEECCCccccccCCc-----cccCCeEEEecCcccCCCCC
Confidence 777652 2567776655 9999999999 99999999998644211111 11235776 5789998754
Q ss_pred c-cceeeeecHHHHHhhhccCCcccccccCCCCCCHHH-HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcccC--CCc
Q psy8199 498 L-PLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLA-CCAALATLEIFNKDNILQRISQDMKKITKALTSLIT--HPK 573 (965)
Q Consensus 498 ~-pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~-~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~~--~~~ 573 (965)
. ..|++++++++++.+....... ..+.+. +.... +..++..|+.+ +...++..++..++.+.|+++.. +|.
T Consensus 251 ~~~gG~i~~~~~li~~l~~~~~~~--~~g~~~-~~~~~~a~~~l~gl~~~--~~r~~~~~~~a~~la~~L~~~g~~V~p~ 325 (427)
T 3i16_A 251 APTGGYLAGTKDCIEKTSYRLTVP--GIGGEC-GSTFGVVRSMYQGLFLA--PHISMEALKGAILCSRIMELAGFEVMPK 325 (427)
T ss_dssp CCSCEEEEECHHHHHHHHHHHSCT--TTGGGC-CCCTTCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTTCEEESC
T ss_pred CceEEEEEECHHHHHHHHHhcccC--ccCccC-CccHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhCCCeecCC
Confidence 3 3578889999998876510000 011111 11122 34444444433 34567778888888888877611 111
Q ss_pred eeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcC
Q psy8199 574 IINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNE 611 (965)
Q Consensus 574 i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~G 611 (965)
..-+...+++.+.+. + ...+.+|++.|....
T Consensus 326 -~~~~~~~~i~~i~l~--~----~~~~~~f~~~l~~~~ 356 (427)
T 3i16_A 326 -YDEKRSDIIQSIKFN--D----KDKLIEFCKGIQTGS 356 (427)
T ss_dssp -TTSCCSSSCEEEECS--S----HHHHHHHHHHHHHTC
T ss_pred -CCCCCccEEEEEEEC--C----HHHHHHHHHHHhhcC
Confidence 011112237777774 2 233456777777664
|
| >1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=5.5e-12 Score=151.11 Aligned_cols=308 Identities=11% Similarity=0.018 Sum_probs=174.4
Q ss_pred CCcHHHHHHHHHHHhhcCCCCCe-EEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCc
Q psy8199 294 LTHKPVIKLSEKLSSLTQYKLGH-CFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSF 372 (965)
Q Consensus 294 ~~~~~~~~la~~l~~~~~~~~~~-v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~ 372 (965)
.+.....++.+.++++++ .+. +++++|+++|+.+++..... ++++||+..+.|+....+.+..+|..
T Consensus 170 ~~~~~i~e~e~~lA~~~g--ae~~i~v~nGtt~an~~ai~al~~--------pGD~VLv~~~~H~S~~~~~~~l~Ga~-- 237 (730)
T 1c4k_A 170 IHEGPAVAAEKHAARVYN--ADKTYFVLGGSSNANNTVTSALVS--------NGDLVLFDRNNHKSVYNSALAMAGGR-- 237 (730)
T ss_dssp TTBTHHHHHHHHHHHHTT--CSEEEEESSHHHHHHHHHHHHHCC--------TTCEEEEETTCCHHHHHHHTTTTCCE--
T ss_pred CChHHHHHHHHHHHHHHC--CCcEEEECCHHHHHHHHHHHHhcC--------CCCEEEEcCCchHHHHHHHHHHCCCE--
Confidence 455677889999999996 344 45556556999999887642 56788888877655433212333311
Q ss_pred cchhcccCCCeeEecCC-CCCCCCCCCChhHHHHHHHHHH-----HHHHHhCC-C---c----EEEEEEccccccCCCcc
Q psy8199 373 KEIYTSLLNKTYIITTP-DSRNINKGNSANEIARCAIFDL-----EILLKKNH-N---K----IAAIIIEPLVQCAGGMI 438 (965)
Q Consensus 373 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~l-----e~~l~~~~-~---~----~aaii~ep~v~~~~G~~ 438 (965)
.++++.. +..+... ..|+++| ++++++.. + . .++++++| +.+|.+
T Consensus 238 ----------~v~v~~~~~~~~i~g--------~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~p---n~~G~v 296 (730)
T 1c4k_A 238 ----------PVYLQTNRNPYGFIG--------GIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLG---TYDGTI 296 (730)
T ss_dssp ----------EEEECEEECTTCCEE--------EECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESB---CTTSEE
T ss_pred ----------EEEEeCCccccCccC--------CCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECC---CCCCee
Confidence 1122110 0000000 0123444 77776431 0 1 34555666 468888
Q ss_pred cCChHHHHHHHHHHHhcCCeEEEeccccC---CCcccc-cccc--cccCCC-cc-ee--eeccccCCCcccce-eeeecH
Q psy8199 439 MYDSIYLKLVREICNNYNIHLIADEIAVG---CGRTGK-FFAC--EHAEIW-PD-FL--CLSKGITGGYLPLS-LVMTTD 507 (965)
Q Consensus 439 ~~~~~~l~~l~~l~~~~g~llI~DEv~tg---~gr~G~-~~~~--~~~~~~-pD-iv--t~sK~l~gG~~pig-~v~~~~ 507 (965)
.+ +++|.++|++||+++|+||+|.+ |+..+. ..+. +.++.. |+ ++ +++|+++| .+.| +++.++
T Consensus 297 ~d----l~~I~~la~~~g~~livDeAh~~~~~f~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L~g--~~~gg~I~v~~ 370 (730)
T 1c4k_A 297 YN----AHEVVKRIGHLCDYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAG--FSQTSQIHKKD 370 (730)
T ss_dssp EC----HHHHHHHHGGGBSEEEEECTTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSC--CTTCEEEEEEC
T ss_pred cC----HHHHHHHHHHcCCeEEEEcccccccccCcccCCcCcccccccCCCCCCEEEEECCCCCCCC--CCCEEEEEecc
Confidence 77 99999999999999999999963 221111 1111 122431 22 44 46898866 3444 443443
Q ss_pred HHH---------HhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc---ccHHHHHHHHHHHHHHHHHc-ccCCCce
Q psy8199 508 KIY---------NSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK---DNILQRISQDMKKITKALTS-LITHPKI 574 (965)
Q Consensus 508 ~i~---------~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~---~~~~~~~~~~~~~l~~~L~~-l~~~~~i 574 (965)
+.+ ..+.. .+....+.+.+...+++..++++.+.. .++.+++.++.+++++.|++ +.....+
T Consensus 371 ~~l~g~~~~i~~~~~~~-----~~~~~~stsp~~~~iaal~aA~~~l~~~~g~~~~~~~~~~a~~lr~~L~~~i~g~~v~ 445 (730)
T 1c4k_A 371 SHIKGQLRYCDHKHFNN-----SFNLFMSTSPFYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPF 445 (730)
T ss_dssp GGGTTSTTCCCHHHHHH-----HHHHHSCSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEES
T ss_pred hhhcCcccccCHHHHHH-----HHHHhCCCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhCCCeEEc
Confidence 321 11111 011122344567777777777776654 34678888888999998876 3211100
Q ss_pred e-ee--------------------------------ec--eeE-E-----EEEEEee---cCc--cchhhHHHHHHHHHH
Q psy8199 575 I-NF--------------------------------RQ--KGM-I-----WAFDVII---EDP--EQIETFSKKFFVAAL 608 (965)
Q Consensus 575 ~-~v--------------------------------~g--~G~-~-----~~i~~~~---~~~--~~~~~~~~~~~~~l~ 608 (965)
. .. .+ .+. + +.+.... .++ ......+..+.+.|.
T Consensus 446 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~idp~kv~i~~pg~~~~~g~~~~~g~~~~~l~~~L~ 525 (730)
T 1c4k_A 446 VPPVVNGKKWEDGDTEDMANNIDYWRFEKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYLR 525 (730)
T ss_dssp SCSEETTEEGGGSCHHHHTTCGGGGBCCTTCTTTCCTTCCTTCEEECTTEEEEECSSEETTTTEECSSCCCHHHHHHHHH
T ss_pred cccccccccccccccccccccchhhccCccchhccccccCCcccccCCeEEEEEeCCcccccccccccCCCHHHHHHHHH
Confidence 0 00 00 111 1 2222210 000 000112446788899
Q ss_pred HcCcEEeecC-CEEEEeCCcccCHHHHHHHHHhhhccc
Q psy8199 609 KNELLLRPIG-NTVYLMPPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 609 ~~Gi~~~~~~-~~lR~~p~~~~t~~~i~~~~~~l~~~~ 645 (965)
++||.+...+ +.+|++++...++++++.+++++.+..
T Consensus 526 e~GI~v~~~~~~~ir~~~s~g~t~e~i~~Ll~aL~~i~ 563 (730)
T 1c4k_A 526 DHGIIPEKSDLNSILFLMTPAETPAKMNNLITQLLQLQ 563 (730)
T ss_dssp HTTCCCSEECSSEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred HCCcEEEECCCCeEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 9999988754 789999999999999999999887654
|
| >2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=1.3e-12 Score=148.94 Aligned_cols=318 Identities=9% Similarity=0.005 Sum_probs=182.9
Q ss_pred cccccccccchhccCCCCCHHHHHHHHHHHhh-c-cc--cccCC-C---CcHHHHHHHHHHHhhcC--CCCCeEEEcCCh
Q psy8199 254 KRYLDAISSWWVNLFGHSNSYINKALKNQLNK-L-EH--VMLSN-L---THKPVIKLSEKLSSLTQ--YKLGHCFYGSDG 323 (965)
Q Consensus 254 ~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~-~-~~--~~~~~-~---~~~~~~~la~~l~~~~~--~~~~~v~~~~sG 323 (965)
+..+|+..|.. .++ .++.+.+++.+++.. . .. |.... + ..+....+++.+....+ ...+++++++|+
T Consensus 56 ~~~i~l~~g~~--~~~-~~~~v~~a~~~~l~~~~~~~~~Y~~~~~G~~~~~~lr~aia~~~~~~~~~~~~~~~iv~t~G~ 132 (427)
T 2hox_A 56 GCSADVASGDG--LFL-EEYWKQHKEASAVLVSPWHRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVFGVGV 132 (427)
T ss_dssp TCCEECCSCCC--GGG-HHHHTTSHHHHCEEECTTTTCSSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTCEEEEESHH
T ss_pred CceEEecCcCC--CCC-CCHHHHHhHHhhhhcCCcccccCCCCCCCccchHHHHHHHHHHHHHhCCcCCCCCEEEEeCCH
Confidence 34567665533 232 345677777766632 1 11 22222 2 34445555555544321 346799999999
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHH
Q psy8199 324 ASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEI 403 (965)
Q Consensus 324 seA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (965)
++|+..++...........-.+++.|++.+++|.++.......+... +...
T Consensus 133 ~~al~~~~~~l~~~~~~~~~~~Gd~Vlv~~P~y~~~~~~~~~~g~~~-------------~~~~---------------- 183 (427)
T 2hox_A 133 TQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFDKKG-------------YVWA---------------- 183 (427)
T ss_dssp HHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHHHSCBTT-------------EEEE----------------
T ss_pred HHHHHHHHHHHhhccccccCCCCCEEEEeCCCcccHHHHHHHcCCee-------------eeec----------------
Confidence 99999999876100000000256889999999987744333322211 0000
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCC
Q psy8199 404 ARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIW 483 (965)
Q Consensus 404 ~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~ 483 (965)
.|+++|++++.+ ++.+|++.. ++|++|.+.+ + +++ ++..|.||.+- . .......+...
T Consensus 184 --~d~~~l~~~~~~---~~k~v~l~~-p~NPtG~~~~--~-------~l~--~~~~i~d~~~~--~---~~~s~~~~~~~ 241 (427)
T 2hox_A 184 --GNAANYVNVSNP---EQYIEMVTS-PNNPEGLLRH--A-------VIK--GCKSIYDMVYY--W---PHYTPIKYKAD 241 (427)
T ss_dssp --EEGGGGTTCSCG---GGEEEEEES-SCTTTCCCCC--C-------SST--TCEEEEECTTC--S---TTTSCCCSCBC
T ss_pred --CCHHHHHHhhcC---CceEEEEcC-CCCCcccccH--H-------HHc--CCCEEEeeccc--C---CCCCccccCCC
Confidence 134566655532 344444444 4899998875 3 222 55677787763 1 11111111112
Q ss_pred ccee--eeccccC-CCcccceeeee-cHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh---------ccc-
Q psy8199 484 PDFL--CLSKGIT-GGYLPLSLVMT-TDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN---------KDN- 549 (965)
Q Consensus 484 pDiv--t~sK~l~-gG~~pig~v~~-~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~---------~~~- 549 (965)
.+++ +|||.++ .| +++|++++ ++++++.+.. +....+.+.+++++.++.++|+... -++
T Consensus 242 ~~i~~~S~SK~~g~~G-~RiG~~~~~~~~l~~~l~~------~~~~~~~~~~~~~q~a~~~~L~~~~~~l~~~~~~~~~~ 314 (427)
T 2hox_A 242 EDILLFTMSKFTGHSG-SRFGWALIKDESVYNNLLN------YMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDL 314 (427)
T ss_dssp CSEEEEEHHHHTSCGG-GCCEEEEECCHHHHHHHHH------HHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSH
T ss_pred ceEEEEeChhcCCCCC-ceEEEEEECCHHHHHHHHH------HHHhcCCCCCHHHHHHHHHHhhcchhhhccccchhHHH
Confidence 3444 6899876 34 89999999 5888887765 2233456678999998888887531 122
Q ss_pred ---HHHHHHHHHHHHHHHHHcccCCCceee--------------eece-eEEEEEEEeecCccchhhHHHHHHHHH-HHc
Q psy8199 550 ---ILQRISQDMKKITKALTSLITHPKIIN--------------FRQK-GMIWAFDVIIEDPEQIETFSKKFFVAA-LKN 610 (965)
Q Consensus 550 ---~~~~~~~~~~~l~~~L~~l~~~~~i~~--------------v~g~-G~~~~i~~~~~~~~~~~~~~~~~~~~l-~~~ 610 (965)
..++++++.+++.+.|+++ +++.. ..+. |+++.+.+. .+ ...+.+.+ .++
T Consensus 315 ~~~~~~~~~~~~~~l~~~L~~~---~g~~~~~~~~~~~~~~~~~~~p~~g~f~~~~~~-~~-------~~~~~~~ll~~~ 383 (427)
T 2hox_A 315 NTFGFKKLRERWVNITALLDQS---DRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCE-WE-------EDKDCYQTFQNG 383 (427)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTS---SSEECCCCCSCEEETTTTEEECCCCSEEEEEEC-SG-------GGCSHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhC---cCccccccccccccccccccCCCCceEEEEECC-Cc-------HHHHHHHHHHHC
Confidence 3455666667777776553 33321 1222 566666664 11 12344555 478
Q ss_pred CcEEeec------CCEEEEeCCcccCHHHHHHHHHhhhccc
Q psy8199 611 ELLLRPI------GNTVYLMPPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 611 Gi~~~~~------~~~lR~~p~~~~t~~~i~~~~~~l~~~~ 645 (965)
||.++|+ .+++|++.. .++++++++++++.+.+
T Consensus 384 gI~v~pg~~f~~~~~~~Ris~~--~~~e~l~~~l~~l~~~~ 422 (427)
T 2hox_A 384 RINTQNGVGFEASSRYVRLSLI--KTQDDFDQLMYYLKDMV 422 (427)
T ss_dssp TEECEEGGGGTSCTTEEEEECS--SCHHHHHHHHHHHHHHH
T ss_pred CEEEcCCCccCCCCCEEEEEec--CCHHHHHHHHHHHHHHH
Confidence 9999874 368999954 58889999998887543
|
| >3rfa_A Ribosomal RNA large subunit methyltransferase N; radical SAM, S-adenosylmethionine, iron sulfur cluster, oxidoreductase; HET: SAM; 2.05A {Escherichia coli} PDB: 3rf9_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=5.9e-12 Score=138.36 Aligned_cols=189 Identities=14% Similarity=0.185 Sum_probs=144.2
Q ss_pred cCCCCCCCCCCCCCCcCCCCcccccCCCHHHHHHHHHHHHH----------CCCCEEEEeeccCCCCcccHHHHHHHHHH
Q psy8199 689 TGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKS----------DGATRFCMGAAWRELKDRDLDNIENMICE 758 (965)
Q Consensus 689 s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~----------~g~~~i~l~~g~~~~~~~~~~~~~~~~~~ 758 (965)
+.+|+++|.||..... . ..+.++++||++++..... .++..|.|+|++.|+. .++.+.++++.
T Consensus 122 q~GCnl~C~fC~tg~~---g--~~r~Lt~eEIv~qv~~~~~~~~~~g~~gg~~i~~Ivf~GgGEPLl--n~d~v~~~i~~ 194 (404)
T 3rfa_A 122 QVGCALECKFCSTAQQ---G--FNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMGMGEPLL--NLNNVVPAMEI 194 (404)
T ss_dssp EEECSSCCTTCGGGTT---C--EEEECCHHHHHHHHHHHHHHHCCHHHHSSCSCSEEEECSSSCGGG--CHHHHHHHHHH
T ss_pred CCCCCCcCCCCCCCCC---C--CCCcCCHHHHHHHHHHHHHHhhhcccccCCCccEEEEeCCCCccc--CHHHHHHHHHH
Confidence 5799999999975431 1 2345899999999876643 2578899997777754 46889999999
Q ss_pred HHh-cCc-----EeEE-ecCCCCHHHHHHHHHhCCCeEeccCCC-CHHHHhcccC---CCCHHHHHHHHH-HHHHcCC--
Q psy8199 759 VKK-IGL-----ETCL-TLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIIS---TRDYENRLNTLK-NVRNVGI-- 824 (965)
Q Consensus 759 i~~-~~~-----~i~~-~~~~~~~e~l~~Lk~aG~~~i~i~~es-~~~~~~~i~~---~~~~~~~~~~i~-~~~~~Gi-- 824 (965)
+++ .|+ .+++ ++|.+ +.+++|.+.+...+.+++.+ +++.++++.+ ..+.++.+++++ .+.+.|.
T Consensus 195 lk~~~Gl~~s~r~itlsTnG~~--p~i~~L~~~~d~~LaiSLka~d~e~~~~i~pv~~~~~le~vl~ai~~~~~~~g~~~ 272 (404)
T 3rfa_A 195 MLDDFGFGLSKRRVTLSTSGVV--PALDKLGDMIDVALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQ 272 (404)
T ss_dssp HHSTTTTCCCGGGEEEEESCCH--HHHHHHHHHCCCEEEEECCCSSHHHHHHHSGGGGTSCHHHHHHHHHHHHHHCTTTT
T ss_pred HHhhcCcCcCCCceEEECCCcH--HHHHHHHHhhcceEEecccCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHHhCCCc
Confidence 987 466 5555 45665 45788888866677899999 8999999984 568999999995 4566776
Q ss_pred -ceee--eEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCCCCCCCHHHHHHHHHHHHHH
Q psy8199 825 -NICC--GGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARIT 892 (965)
Q Consensus 825 -~v~~--~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~~~~~~~~~~~~~ia~~R~~ 892 (965)
++.. .+|-|++++.+++.+.+++++.++ ..|.+.+|.|+++++ .++++.+++.+...+++..
T Consensus 273 ~~V~ie~vLI~GvNDs~e~~~~La~ll~~l~---~~VnLIpynP~~~~~---~~~ps~e~i~~f~~iL~~~ 337 (404)
T 3rfa_A 273 GRVTIEYVMLDHVNDGTEHAHQLAELLKDTP---CKINLIPWNPFPGAP---YGRSSNSRIDRFSKVLMSY 337 (404)
T ss_dssp TCEEEEEEEBTTTTCSHHHHHHHHHHTTTSC---EEEEEEECCCCTTCC---CCBCCHHHHHHHHHHHHHT
T ss_pred ccEEEEEEEecCCCCCHHHHHHHHHHHHcCC---CcEEEEeccCCCCCC---CCCCCHHHHHHHHHHHHHc
Confidence 6654 344566799999999999999986 467788888887764 4567888888888777754
|
| >2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.6e-11 Score=148.60 Aligned_cols=311 Identities=8% Similarity=0.016 Sum_probs=179.5
Q ss_pred CcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccc
Q psy8199 295 THKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKE 374 (965)
Q Consensus 295 ~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~ 374 (965)
+.....++.+.+++.++.. +.+++++|+++|+.+++..... ++++|++..++|+....+ +..+|.
T Consensus 203 ~~g~v~~~ee~la~l~G~d-~~i~~~~Gtt~a~~~~i~al~~--------~GD~Vlv~~~~h~s~~~~-~~~~G~----- 267 (755)
T 2vyc_A 203 HTGAFGESEKYAARVFGAD-RSWSVVVGTSGSNRTIMQACMT--------DNDVVVVDRNCHKSIEQG-LMLTGA----- 267 (755)
T ss_dssp TCHHHHHHHHHHHHHHTCS-EEEEESSHHHHHHHHHHHHHCC--------TTCEEEEESSCCHHHHHH-HHHHCC-----
T ss_pred CccHHHHHHHHHHHHhCCC-ceEEECCcHHHHHHHHHHHhcC--------CCCEEEECCCchHHHHHH-HHHcCC-----
Confidence 4556778888888988632 3455666667899999887642 568899888887554222 222221
Q ss_pred hhcccCCCeeEecCCCC-CCCCCCCChhHHHHHHHHHHHHHHHhCCCcE--------EEEEEccccccCCCcccCChHHH
Q psy8199 375 IYTSLLNKTYIITTPDS-RNINKGNSANEIARCAIFDLEILLKKNHNKI--------AAIIIEPLVQCAGGMIMYDSIYL 445 (965)
Q Consensus 375 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~--------aaii~ep~v~~~~G~~~~~~~~l 445 (965)
..++++.... .+.....+. ...|+++|++++++.+... ++++++| +.+|.+.+ +
T Consensus 268 -------~~v~v~~~~~~~g~~g~i~~---~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p---n~~G~v~d----l 330 (755)
T 2vyc_A 268 -------KPVYMVPSRNRYGIIGPIYP---QEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC---TYDGVCYN----A 330 (755)
T ss_dssp -------EEEEECCCBCTTSCBCCCCG---GGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS---CTTSEEEC----H
T ss_pred -------EEEEEeCCCCccccccccCc---CCCCHHHHHHHHHhCccccccccCCCeEEEEECC---CCCceecC----H
Confidence 1223332110 000000000 0016788999887642221 4566666 46788877 9
Q ss_pred HHHHHHHHhcCCeEEEeccccCCCcccccc--cccccCCCcce------e--eeccccCCCccc-ceeeeecHH--HH--
Q psy8199 446 KLVREICNNYNIHLIADEIAVGCGRTGKFF--ACEHAEIWPDF------L--CLSKGITGGYLP-LSLVMTTDK--IY-- 510 (965)
Q Consensus 446 ~~l~~l~~~~g~llI~DEv~tg~gr~G~~~--~~~~~~~~pDi------v--t~sK~l~gG~~p-ig~v~~~~~--i~-- 510 (965)
++|.++|++||+++|+||+|.+.-..+..+ .....+...|+ + +++|+++| .+ .|++.++++ .+
T Consensus 331 ~~I~~ia~~~~~~livDeA~~~~~~~~~~~~~~~~~~g~~aD~~~~~~iv~~S~hK~L~g--~~~g~~i~~~~~~~~i~~ 408 (755)
T 2vyc_A 331 KEAQDLLEKTSDRLHFDEAWYGYARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNA--LSQASYIHVREGRGAINF 408 (755)
T ss_dssp HHHHHHHTTTCSEEEEECTTCTTGGGCGGGTTSSSSCSCCCCCSSBEEEEEEETTTSSSC--CTTCEEEEEECCBTCCCH
T ss_pred HHHHHHHHHcCCEEEEECcCchhcccCcccCCcchhcCCcCCccCCCeEEEECccccccC--cCCeeeeeecCcccccCH
Confidence 999999999999999999997421222211 01112200232 3 56898876 34 455556543 11
Q ss_pred HhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcc---cHHHHHHHHHHHHHHHHHcccC---------CCcee--e
Q psy8199 511 NSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKD---NILQRISQDMKKITKALTSLIT---------HPKII--N 576 (965)
Q Consensus 511 ~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~---~~~~~~~~~~~~l~~~L~~l~~---------~~~i~--~ 576 (965)
..+.. .+....+.+.+.+.+++..++++.+..+ ++.++..++.++++++|+++.. ...+. .
T Consensus 409 ~~~~~-----~~~~~~s~sp~~~~iaal~aA~~~l~~~gg~~~~~~~~~~a~~~r~~L~~l~~~~~~~~~~~~~~~~~~~ 483 (755)
T 2vyc_A 409 SRFNQ-----AYMMHATTSPLYAICASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMARLYKEFTADGSWFFKPWNKEV 483 (755)
T ss_dssp HHHHH-----HHHHTSCSSCCHHHHHHHHHHHHHHSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCEESSCSE
T ss_pred HHHHH-----HHHHhCCCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccccccccccceeeccCchh
Confidence 12211 0111223456777888888888877543 5788888899999999977522 10000 1
Q ss_pred eec---------------------------------------ee------EEEEEEEeecCccch-----hhHHHHHHHH
Q psy8199 577 FRQ---------------------------------------KG------MIWAFDVIIEDPEQI-----ETFSKKFFVA 606 (965)
Q Consensus 577 v~g---------------------------------------~G------~~~~i~~~~~~~~~~-----~~~~~~~~~~ 606 (965)
+.+ .| ..+.+... +.+.+. .--+..+.+.
T Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~Dp~~v~i~~~-~~~~~G~~~~~g~~~~~l~~~ 562 (755)
T 2vyc_A 484 VTDPQTGKTYDFADAPTKLLTTVQDCWVMHPGESWHGFKDIPDNWSMLDPIKVSILAP-GMGEDGELEETGVPAALVTAW 562 (755)
T ss_dssp EECTTTCCEEEGGGSCHHHHHHCGGGTBCCTTCTTTCCTTCCTTSEEECTTEEEEECS-CBCTTSSBCSSCCCHHHHHHH
T ss_pred ccccccccccccccccchhccchhhhhccCcccccccccccCCCccccCCeEEEEEcC-CCCCCCCccccCCcHHHHHHH
Confidence 100 11 12233221 100000 0112457778
Q ss_pred HHHcCcEEeecC-CEEEEeCCcccCHHHHHHHHHhhhccc
Q psy8199 607 ALKNELLLRPIG-NTVYLMPPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 607 l~~~Gi~~~~~~-~~lR~~p~~~~t~~~i~~~~~~l~~~~ 645 (965)
|.++||.+...+ +.+|+..+...|+++++.+++++.+..
T Consensus 563 L~~~gI~~e~~~~~~v~~~~~~g~t~~~~~~l~~al~~~~ 602 (755)
T 2vyc_A 563 LGRHGIVPTRTTDFQIMFLFSMGVTRGKWGTLVNTLCSFK 602 (755)
T ss_dssp HHTTTCCCSEECSSEEEEECCTTCCTTTTHHHHHHHHHHH
T ss_pred HHHCCCEEeecCCCeEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 888999887543 789999999999999999998887643
|
| >2a5h_A L-lysine 2,3-aminomutase; radical SAM, four-iron-four-sulfur cluster, 4Fe4S, FS4, SAM, adenosylmethionine, alpha-beta channel; HET: SAM LYS PLP; 2.10A {Clostridium subterminale} | Back alignment and structure |
|---|
Probab=99.32 E-value=5.3e-12 Score=141.76 Aligned_cols=191 Identities=17% Similarity=0.197 Sum_probs=136.1
Q ss_pred EeEeeccCCCCCCCCCCCCCCcCCCCcccccCCCHHHHHHHHHHHHH-CCCCEEEEeeccCCCCcccHHHHHHHHHHHHh
Q psy8199 683 VLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKS-DGATRFCMGAAWRELKDRDLDNIENMICEVKK 761 (965)
Q Consensus 683 ~~i~~~s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~-~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~ 761 (965)
..+.+ |++|+.+|.||..+..... ....++.+++.+.++.+.+ .|++.|.|+||+ |+...+ +.+.++++.+++
T Consensus 117 v~l~v-T~~Cnl~C~yC~~~~~~~~---~~~~ls~eei~~~i~~i~~~~gi~~V~ltGGE-Pll~~d-~~L~~il~~l~~ 190 (416)
T 2a5h_A 117 VLLLI-TDMCSMYCRHCTRRRFAGQ---SDDSMPMERIDKAIDYIRNTPQVRDVLLSGGD-ALLVSD-ETLEYIIAKLRE 190 (416)
T ss_dssp EEEEE-ESCCSSCCTTCTTTTTTTS---SSSBCCHHHHHHHHHHHHTCTTCCEEEEEESC-TTSSCH-HHHHHHHHHHHT
T ss_pred EEEec-CCCccccCcCCCCcccCCC---ccCCCCHHHHHHHHHHHHhcCCCcEEEEECCC-CCCCCH-HHHHHHHHHHHh
Confidence 44566 9999999999976542211 2235899999999998888 699999998764 544432 345566666665
Q ss_pred c-C---cEeEEec-----CCCCHHHHHHHHHhCCCeEeccCCC-CHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEE
Q psy8199 762 I-G---LETCLTL-----GMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGI 831 (965)
Q Consensus 762 ~-~---~~i~~~~-----~~~~~e~l~~Lk~aG~~~i~i~~es-~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i 831 (965)
. + +.+.++. ..++++.++.|+++ +.+.+++++ ++ +++. ++.+++++.++++|+.+....+
T Consensus 191 ~~~v~~i~i~Tng~~~~p~~it~e~l~~L~~~--~~v~Isl~~~~~---~ei~-----~~v~~ai~~L~~aGi~v~i~~v 260 (416)
T 2a5h_A 191 IPHVEIVRIGSRTPVVLPQRITPELVNMLKKY--HPVWLNTHFNHP---NEIT-----EESTRACQLLADAGVPLGNQSV 260 (416)
T ss_dssp STTCCEEEEECSHHHHCGGGCCHHHHHHHGGG--CSEEEEECCCSG---GGCC-----HHHHHHHHHHHHTTCCEEEEEE
T ss_pred cCCccEEEEEecccccccccCCHHHHHHHHhc--CcEEEEEecCCH---HHHh-----HHHHHHHHHHHHcCCEEEEEEE
Confidence 3 3 3333332 35689999999998 888999998 55 3343 8999999999999998776655
Q ss_pred E--ecCCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCC
Q psy8199 832 I--GLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMP 894 (965)
Q Consensus 832 ~--Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp 894 (965)
+ |++++.+++.+.++++.+++ +....++.+-+.+||++.. .+..+..+++..+|..++
T Consensus 261 ll~GvNd~~e~l~~l~~~l~~lg--v~~~~i~~~~~~~g~~~~~---~~~~~~~eil~~l~~~~~ 320 (416)
T 2a5h_A 261 LLRGVNDCVHVMKELVNKLVKIR--VRPYYIYQCDLSLGLEHFR---TPVSKGIEIIEGLRGHTS 320 (416)
T ss_dssp CCTTTTCSHHHHHHHHHHHHHTT--EEEEEEECCCCBTTCGGGC---CCHHHHHHHHHTTBTTBC
T ss_pred EECCCCCCHHHHHHHHHHHHHcC--CceEEEeecCCCCCccccc---CCcccHHHHHHHHHHHCC
Confidence 5 67789999999999999998 5554444333457887543 356666777766665443
|
| >3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.4e-11 Score=136.32 Aligned_cols=319 Identities=10% Similarity=0.028 Sum_probs=185.1
Q ss_pred CCCCHHHHHHHHHHHhhccccccC----CC----CcHHHHHHHHHHHhhcCCCC-CeEEE-cCChhHHHHHHHHHHHHHH
Q psy8199 269 GHSNSYINKALKNQLNKLEHVMLS----NL----THKPVIKLSEKLSSLTQYKL-GHCFY-GSDGASAVEVALKMSFHYW 338 (965)
Q Consensus 269 Gh~~p~v~~av~~~~~~~~~~~~~----~~----~~~~~~~la~~l~~~~~~~~-~~v~~-~~sGseA~~~Al~~a~~~~ 338 (965)
+.-+|+|.+|+.+.+.+......+ .. ..+...+..+.++++++... .+|+| +.|||+|++.|++.....
T Consensus 22 ~~~p~~Vl~a~~~~~~~~~~n~~s~~~~~hr~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~a~~~l~~~- 100 (377)
T 3e77_A 22 SMLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLVRELLAVPDNYKVIFLQGGGCGQFSAVPLNLIGL- 100 (377)
T ss_dssp CCCCHHHHHHHHHTSSSGGGSSSCTTTCCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHGGG-
T ss_pred CCCCHHHHHHHHHHHHhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCCeEEEEcCchHHHHHHHHHhccCC-
Confidence 346899999999887643111101 11 13345677778889887543 47888 589999999999866421
Q ss_pred HhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhC
Q psy8199 339 YNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKN 418 (965)
Q Consensus 339 ~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~ 418 (965)
.++++++....++++.... .........+..++.+..... ++++++..+
T Consensus 101 -----~~Gd~v~~~~~g~~~~~~~-----------~~a~~~G~~~~~~~~~~~~~~------------~~~~~~~~i--- 149 (377)
T 3e77_A 101 -----KAGRCADYVVTGAWSAKAA-----------EEAKKFGTINIVHPKLGSYTK------------IPDPSTWNL--- 149 (377)
T ss_dssp -----STTCEEEECCCSHHHHHHH-----------HHHTTTSEEEECSCCCSSSCS------------CCCGGGCCC---
T ss_pred -----CCCCeEEEEECCHHHHHHH-----------HHHHHhCCceEEeccCCCcCC------------CCChHHhcc---
Confidence 1246777666555543111 000000111222232211111 122233333
Q ss_pred CCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcceeeec--cccCCC
Q psy8199 419 HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS--KGITGG 496 (965)
Q Consensus 419 ~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~s--K~l~gG 496 (965)
.+++..|.+-. ..+.+|.+.| + +|+++|+++++|-+|+ +|.. .+..+.++ ++++| |.+ |
T Consensus 150 ~~~t~lV~~~h-~et~tG~~~p----i-----i~~~~~~~~~vD~~q~-~g~~--~id~~~~~----~~~~s~~K~~-g- 210 (377)
T 3e77_A 150 NPDASYVYYCA-NETVHGVEFD----F-----IPDVKGAVLVCDMSSN-FLSK--PVDVSKFG----VIFAGAQKNV-G- 210 (377)
T ss_dssp CTTCSCEEEES-EETTTTEECS----S-----CCCCTTCCEEEECTTT-TTSS--CCCGGGCS----EEEEEGGGTT-S-
T ss_pred CCCccEEEEeC-ccCchheEch----h-----hhccCCCEEEEEcccc-cCCC--CCchhhcC----EEEEeccccc-C-
Confidence 23444444433 3455698887 2 5889999999999997 5422 33344444 35554 777 3
Q ss_pred cccceeeeecHHHHHhhhccCCccccc-------ccCCC-CCCHHHHHHHHHHHHHHhcc----cHHHHHHHHHHHHHHH
Q psy8199 497 YLPLSLVMTTDKIYNSIYYKNNINIFL-------HSHSY-SGNPLACCAALATLEIFNKD----NILQRISQDMKKITKA 564 (965)
Q Consensus 497 ~~pig~v~~~~~i~~~~~~~~~~~~~~-------~~~t~-~~~~~~~aaa~a~L~~~~~~----~~~~~~~~~~~~l~~~ 564 (965)
...+|+++.++++.+.+... ...+. .+.++ +.|..+..+..++|+++.+. .+.++.+++.+++.++
T Consensus 211 p~G~g~l~~~~~~l~~~~~~--~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~GG~~~i~~~~~~l~~~l~~~ 288 (377)
T 3e77_A 211 SAGVTVVIVRDDLLGFALRE--CPSVLEYKVQAGNSSLYNTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEI 288 (377)
T ss_dssp CTTCEEEEEETTSCSCCCTT--SCGGGCHHHHHTTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred CCccEEEEEcHHHHhhccCC--CCchhhHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHH
Confidence 35688888888876443210 00111 12233 34555677777889987654 3566677777888888
Q ss_pred HHcccCCCcee--e--eece-eEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecC---CEEEEeCCcccCHHHHHH
Q psy8199 565 LTSLITHPKII--N--FRQK-GMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG---NTVYLMPPYILNKNEIQH 636 (965)
Q Consensus 565 L~~l~~~~~i~--~--v~g~-G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~---~~lR~~p~~~~t~~~i~~ 636 (965)
|+++ +++. . ...+ +.++.|.+. +..........+...+.++||.++++. +.+|++.....+.++++.
T Consensus 289 L~~~---~g~~~~~~~~~~rs~~ivsf~~~--~~~~~~~~~~~~l~~l~~~Gi~~~~g~~~~g~iRiS~~~~~t~edId~ 363 (377)
T 3e77_A 289 IDNS---QGFYVCPVEPQNRSKMNIPFRIG--NAKGDDALEKRFLDKALELNMLSLKGHRSVGGIRASLYNAVTIEDVQK 363 (377)
T ss_dssp HHTS---TTSEECCSCGGGBCSSEEEEEES--STTCCHHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHH
T ss_pred HHhc---CCceecCCCHHHcCCcEEEEEcC--CCCCchhHHHHHHHHHHHCCcEEeCCCCcCCEEEEECCCCCCHHHHHH
Confidence 7765 3322 1 1112 345667664 211112222356677889999987642 569999999999999999
Q ss_pred HHHhhhccc
Q psy8199 637 MTSAIFQTF 645 (965)
Q Consensus 637 ~~~~l~~~~ 645 (965)
+++.+++..
T Consensus 364 l~~al~~~~ 372 (377)
T 3e77_A 364 LAAFMKKFL 372 (377)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999887643
|
| >3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=4.2e-12 Score=141.40 Aligned_cols=322 Identities=10% Similarity=0.032 Sum_probs=180.8
Q ss_pred cccccccccchhccCCCCCHHHHHHHHHHHhhccc--------cccCCCCcHHHHHHHHHHHhhcCCCC-CeEEE-cCCh
Q psy8199 254 KRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEH--------VMLSNLTHKPVIKLSEKLSSLTQYKL-GHCFY-GSDG 323 (965)
Q Consensus 254 ~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~--------~~~~~~~~~~~~~la~~l~~~~~~~~-~~v~~-~~sG 323 (965)
+.|+|..+... -+|+|++|+.+.+.+... .+......+..++..+.++++++... .+|+| ++||
T Consensus 27 ~~yl~~agpt~------~p~~V~~a~~~~~~~~~~n~~s~~~~~h~~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~ 100 (386)
T 3qm2_A 27 QVFNFSSGPAM------LPAEVLKLAQQELCDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLLNIPSNYKVLFCHGGG 100 (386)
T ss_dssp CCEECCSSSCC------CCHHHHHHHTCC-----------------------CCHHHHHHHHHHHTCCTTEEEEEEESCT
T ss_pred cCccccCCCCC------CCHHHHHHHHHHHHhccccCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCc
Confidence 57888765533 589999999876644211 01111123445677788888887533 47888 6999
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCC---CCCCCCCCCCh
Q psy8199 324 ASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTP---DSRNINKGNSA 400 (965)
Q Consensus 324 seA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 400 (965)
|+|++.+++.... ++++++....+.++...... + .... .+..++.+ ....
T Consensus 101 T~a~n~ai~~l~~--------~gd~v~~~~~~~~~~~~~~~-a----------~~~G-~v~~v~~~~~~~G~~------- 153 (386)
T 3qm2_A 101 RGQFAGVPLNLLG--------DKTTADYVDAGYWAASAIKE-A----------KKYC-APQIIDAKITVDGKR------- 153 (386)
T ss_dssp THHHHHHHHHHCT--------TCCEEEEEESSHHHHHHHHH-H----------TTTS-EEEEEECEEEETTEE-------
T ss_pred hHHHHHHHHhccC--------CCCeEEEEeCCHHHHHHHHH-H----------HHhC-CeEEEecCcccCCCC-------
Confidence 9999999986532 34666655555554321100 0 0011 23444433 1100
Q ss_pred hHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcc-cCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccc
Q psy8199 401 NEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMI-MYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEH 479 (965)
Q Consensus 401 ~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~-~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~ 479 (965)
.+++++++++. ++++.|.+-. +.+.+|.+ .| +++| + +|+++++|-+|+ +|.. .+..+.
T Consensus 154 -----~~~~~~~~~l~---~~t~lV~~~h-~et~tG~~i~p----i~~i---~--~g~~~~vDa~qs-~g~~--pidv~~ 212 (386)
T 3qm2_A 154 -----AVKPMREWQLS---DNAAYLHYCP-NETIDGIAIDE----TPDF---G--PEVVVTADFSST-ILSA--PLDVSR 212 (386)
T ss_dssp -----EECCGGGCCCC---TTCSCEEECS-EETTTTEECCC----CCCC---C--TTCCEEEECTTT-TTSS--CCCGGG
T ss_pred -----CCchHHHhhcC---CCCcEEEEEC-CcCCcCEecCc----hhhh---c--CCCEEEEEcccc-cCCC--CCCccc
Confidence 02234444443 3455555544 44556985 65 3333 3 799999999997 5432 333444
Q ss_pred cCCCcceeeec--cccCCCcccceeeeecHHHHHhhhccCCc----ccc-cccCCC-CCCHHHHHHHHHHHHHHhcc---
Q psy8199 480 AEIWPDFLCLS--KGITGGYLPLSLVMTTDKIYNSIYYKNNI----NIF-LHSHSY-SGNPLACCAALATLEIFNKD--- 548 (965)
Q Consensus 480 ~~~~pDivt~s--K~l~gG~~pig~v~~~~~i~~~~~~~~~~----~~~-~~~~t~-~~~~~~~aaa~a~L~~~~~~--- 548 (965)
++ ++++| |.+ | ...+|++++++++.+.+....+. ... ..+..+ +.|..+.++..++|+.+.+.
T Consensus 213 ~~----~~~~s~hK~l-G-P~G~g~l~v~~~~~~~~~~~~p~~~~~~~~~~~~~~~gTp~v~~i~~l~~Al~~~~~~gG~ 286 (386)
T 3qm2_A 213 YG----VIYAGAQKNI-G-PAGLTLVIVREDLLGKAHESCPSILDYTVLNDNDSMFNTPPTFAWYLSGLVFKWLKAQGGV 286 (386)
T ss_dssp CS----EEEEETTTTT-C-CTTEEEEEEEGGGCSCCCTTSCGGGCHHHHHHC-------CCSHHHHHHHHHHHHHHHTHH
T ss_pred cC----EEEEeccccc-C-CCccEEEEECHHHHhhhcccCCcHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHhcCH
Confidence 44 34454 777 3 35688999998875433210000 000 011111 23445666777788876543
Q ss_pred -cHHHHHHHHHHHHHHHHHcccCCCceee---eece-eEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecC---CE
Q psy8199 549 -NILQRISQDMKKITKALTSLITHPKIIN---FRQK-GMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG---NT 620 (965)
Q Consensus 549 -~~~~~~~~~~~~l~~~L~~l~~~~~i~~---v~g~-G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~---~~ 620 (965)
...++.+++.+++.++|+++ +.+.. ...+ ..++.|.+. + ......+...|.++||.++.+. +.
T Consensus 287 ~~i~~~~~~l~~~l~~~l~~~---~~~~~~~~~~~rs~~iv~f~~~--~----~~~~~~~~~~L~~~gI~~~~g~~~~~~ 357 (386)
T 3qm2_A 287 AAMHKINQQKAELLYGVIDNS---DFYRNDVAQANRSRMNVPFQLA--D----NTLDKVFLEESFAAGLHALKGHRVVGG 357 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC---SSEECCBCGGGBCSSEEEEEES--S----GGGHHHHHHHHHHTTEECCBCCTTTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHC---CCcccCCCHHHcCceEEEEECC--C----ccccHHHHHHHHHCCCEEeCCCCCcCe
Confidence 35667777888888888765 21111 1112 235666654 2 1122356667889999987642 46
Q ss_pred EEEeCCcccCHHHHHHHHHhhhcc
Q psy8199 621 VYLMPPYILNKNEIQHMTSAIFQT 644 (965)
Q Consensus 621 lR~~p~~~~t~~~i~~~~~~l~~~ 644 (965)
+|+++....|.++++.+++.+.+.
T Consensus 358 iRiS~~~~~t~edId~l~~~l~~~ 381 (386)
T 3qm2_A 358 MRASIYNAMPIEGVKALTDFMIDF 381 (386)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999988754
|
| >3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=1.5e-10 Score=137.35 Aligned_cols=308 Identities=8% Similarity=0.054 Sum_probs=178.7
Q ss_pred CCcHHHHHHHHHHHhhcCCCCCeEEEcCCh-hHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCc
Q psy8199 294 LTHKPVIKLSEKLSSLTQYKLGHCFYGSDG-ASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSF 372 (965)
Q Consensus 294 ~~~~~~~~la~~l~~~~~~~~~~v~~~~sG-seA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~ 372 (965)
.++....++.+++++.++ .++++|.++| +.||.+++.... .++++|++..++|... ..++..+|..
T Consensus 192 ~~~g~i~eaE~~lA~~fG--a~~a~~v~nGts~An~~ai~al~--------~pGD~VLv~r~~H~S~-~~~l~lsGa~-- 258 (715)
T 3n75_A 192 DHSGPHKEAEQYIARVFN--ADRSYMVTNGTSTANKIVGMYSA--------PAGSTILIDRNCHKSL-THLMMMSDVT-- 258 (715)
T ss_dssp TTBTHHHHHHHHHHHHHT--CSEEEEESSHHHHHHHHHHHHHC--------CTTCEEEEESSCCHHH-HHHHHHSCCE--
T ss_pred CCcHHHHHHHHHHHHHhC--CCCceEECcHHHHHHHHHHHHhC--------CCCCEEEECCCccHHH-HHHHHHcCCE--
Confidence 456677889999999994 5777776666 699988888664 2567788777665443 3333333311
Q ss_pred cchhcccCCCeeEecCC-CCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcE---EEEEEccccccCCCcccCChHHHHHH
Q psy8199 373 KEIYTSLLNKTYIITTP-DSRNINKGNSANEIARCAIFDLEILLKKNHNKI---AAIIIEPLVQCAGGMIMYDSIYLKLV 448 (965)
Q Consensus 373 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~---aaii~ep~v~~~~G~~~~~~~~l~~l 448 (965)
.++++.. +.++...+.+.. ..|+++|+++++++++.. ++|+++| +..|.+.+ +++|
T Consensus 259 ----------pv~v~~~~~~~gi~~~i~~~---~~d~e~Le~~l~~~~~~k~p~~vivt~p---n~~G~v~d----l~~I 318 (715)
T 3n75_A 259 ----------PIYFRPTRNAYGILGGIPQS---EFQHATIAKRVKETPNATWPVHAVITNS---TYDGLLYN----TDFI 318 (715)
T ss_dssp ----------EEEECCCBCTTCCBCCCCGG---GGSHHHHHHHHHHSTTCCSCSEEEEESS---CTTSEEEC----HHHH
T ss_pred ----------EEEEeccccccccccCcccc---cCCHHHHHHHHhhCcCccCceEEEEECC---CCCCccCC----HHHH
Confidence 1222211 001100000000 016789999998653322 4566666 77898887 8899
Q ss_pred HHHHHhcCCeEEEeccccCCCccccccc-ccc--cCCCccee-----eeccccCCCccc-ceeeeecHHHH-HhhhccCC
Q psy8199 449 REICNNYNIHLIADEIAVGCGRTGKFFA-CEH--AEIWPDFL-----CLSKGITGGYLP-LSLVMTTDKIY-NSIYYKNN 518 (965)
Q Consensus 449 ~~l~~~~g~llI~DEv~tg~gr~G~~~~-~~~--~~~~pDiv-----t~sK~l~gG~~p-ig~v~~~~~i~-~~~~~~~~ 518 (965)
.++|++++ +|+||+|.+....+..+. ... .+..+|++ +++|+++| +. .|++.++.++. ..+..
T Consensus 319 ~ela~~~~--livDEAH~~~~~f~~~~~~~~al~~g~~aD~vii~~~S~hKtL~g--ltqgs~i~v~~~i~~~~~~~--- 391 (715)
T 3n75_A 319 KKTLDVKS--IHFDSAWVPYTNFSPIYEGKCGMSGGRVEGKVIYETQSTHKLLAA--FSQASMIHVKGDVNEETFNE--- 391 (715)
T ss_dssp HHHCCCSE--EEEECTTCTTGGGSGGGTTSSTTSSSCCTTCEEEEEECHHHHSSC--CTTCEEEEEESCCCHHHHHH---
T ss_pred HHHhCcCc--EEEccccccccccCCccccccccccCcCCCEEEEEEecccccccC--CCCeeEEEeCchhhHHHHHH---
Confidence 99998774 799999974212232221 111 12236754 57899876 32 35566655421 11221
Q ss_pred cccccccCCCCCCHHHHHHHHHHHHHHhc---ccHHHHHHHHHHHHHHHHHcccC-CCc--eee-----ee---------
Q psy8199 519 INIFLHSHSYSGNPLACCAALATLEIFNK---DNILQRISQDMKKITKALTSLIT-HPK--IIN-----FR--------- 578 (965)
Q Consensus 519 ~~~~~~~~t~~~~~~~~aaa~a~L~~~~~---~~~~~~~~~~~~~l~~~L~~l~~-~~~--i~~-----v~--------- 578 (965)
......|.+.+++.+|+..++++.++. +++.+++.++.++++++|+++.. .++ +.. +.
T Consensus 392 --~~~~~~STSpsy~~~AsldaA~~~~~~~~g~~~~~~l~~~a~~~r~~L~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (715)
T 3n75_A 392 --AYMMHTTTSPHYGIVASTETAAAMMKGNAGKRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRS 469 (715)
T ss_dssp --HHHHTSCSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCEESSCSCCCSCSCEECCT
T ss_pred --HHHhhcCCCchHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhhcccceeeccCcccccchhhhccCc
Confidence 112234556788899999999988863 45789999999999999987632 000 000 00
Q ss_pred ----------ceeE-E-----EEEEEee--cCccc--hhhHHHHHHHHHHHcCcEEeec-CCEEEEeCCcccCHHHHHHH
Q psy8199 579 ----------QKGM-I-----WAFDVII--EDPEQ--IETFSKKFFVAALKNELLLRPI-GNTVYLMPPYILNKNEIQHM 637 (965)
Q Consensus 579 ----------g~G~-~-----~~i~~~~--~~~~~--~~~~~~~~~~~l~~~Gi~~~~~-~~~lR~~p~~~~t~~~i~~~ 637 (965)
+.+. + +.+.... .++.. ..-.+..+.+.|.++||.+.-. .+.+-+..+...++++++.+
T Consensus 470 ~~~w~gf~~~~~~~~~~Dp~Kl~i~~~~~~~~G~~~~~Gi~g~~~~~~L~~~~I~~E~~d~~~vl~l~s~g~~~~~~~~L 549 (715)
T 3n75_A 470 DSTWHGFKNIDNEHMYLDPIKVTLLTPGMEKDGTMSDFGIPASIVAKYLDEHGIVVEKTGPYNLLFLFSIGIDKTKALSL 549 (715)
T ss_dssp TCCTTCCTTCCSSSEEECTTEEEEECSCBCTTSCBCSSCCCHHHHHHHHHHTTCCCSEEETTEEEEECCTTCCHHHHHHH
T ss_pred ccccccccccccCcccCCCeEEEEEcCCCCCCCccccCCCcHHHHHHHHHHCCCEEEecCCCcEEEEeCCCCCHHHHHHH
Confidence 0011 0 1111110 00000 0011335667788899987643 36677777778899999988
Q ss_pred HHhhhc
Q psy8199 638 TSAIFQ 643 (965)
Q Consensus 638 ~~~l~~ 643 (965)
++++.+
T Consensus 550 ~~aL~~ 555 (715)
T 3n75_A 550 LRALTD 555 (715)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887764
|
| >3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.19 E-value=6.1e-10 Score=122.71 Aligned_cols=309 Identities=9% Similarity=-0.018 Sum_probs=178.1
Q ss_pred CCHHHHHHHHHHHhhccccccC----CC----CcHHHHHHHHHHHhhcCCC-CCeEEE-cCChhHHHHHHHHHHHHHHHh
Q psy8199 271 SNSYINKALKNQLNKLEHVMLS----NL----THKPVIKLSEKLSSLTQYK-LGHCFY-GSDGASAVEVALKMSFHYWYN 340 (965)
Q Consensus 271 ~~p~v~~av~~~~~~~~~~~~~----~~----~~~~~~~la~~l~~~~~~~-~~~v~~-~~sGseA~~~Al~~a~~~~~~ 340 (965)
-+|+|.+|+.+.+.+......+ .. ..+..++..+.++++++.. ..+|+| ++|||+|++.|++...
T Consensus 16 ~~~~V~~a~~~~~~~~~~~~~s~~~~~hr~~~~~~~~~~~r~~la~ll~~~~~~~v~f~t~~~T~a~n~~~~~~~----- 90 (361)
T 3m5u_A 16 LPLEILEQAQKELCDYQGRGYSIMEISHRTKVFEEVHFGAQEKAKKLYELNDDYEVLFLQGGASLQFAMIPMNLA----- 90 (361)
T ss_dssp CCHHHHHHHHHTSSSGGGSSSCGGGSCSSSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHC-----
T ss_pred CcHHHHHHHHHHHHhcccCCceeeccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCcHHHHHHHHHHhcC-----
Confidence 4899999999877542111000 11 1244567777889988754 347888 9999999999988552
Q ss_pred cCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCC-CCCCChhHHHHHHHHHHHHHHHhCC
Q psy8199 341 KGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNI-NKGNSANEIARCAIFDLEILLKKNH 419 (965)
Q Consensus 341 ~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~~~le~~l~~~~ 419 (965)
+++++.....+.++.... .........+..++.+..... . ++++ + |.
T Consensus 91 ----~~~~~~~i~~~~~~~~~~-----------~~a~~~G~~v~~~~~~~~g~~~~-----------~~~~-~--l~--- 138 (361)
T 3m5u_A 91 ----LNGVCEYANTGVWTKKAI-----------KEAQILGVNVKTVASSEESNFDH-----------IPRV-E--FS--- 138 (361)
T ss_dssp ----CSSCEEEEECSHHHHHHH-----------HHHHHTTCCEEEEEECTTTTSCS-----------CCCC-C--CC---
T ss_pred ----CCCeEEEEeCCHHHHHHH-----------HHHHHcCCceEEEecccCcCCCc-----------CChh-h--cC---
Confidence 123332222233332110 000111224455554422110 0 1122 2 33
Q ss_pred CcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcceeeec--cccCCCc
Q psy8199 420 NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS--KGITGGY 497 (965)
Q Consensus 420 ~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~s--K~l~gG~ 497 (965)
+++..|.+-. ..+.+|.+.+. +++ +|+++++|-+|+ +|.. .+..+ ..|++++| |.+ | .
T Consensus 139 ~~t~lv~~~~-~e~~tG~~~~~---------i~~-~~~~~~vD~~q~-~g~~--~id~~----~~d~~~~s~~K~~-g-p 198 (361)
T 3m5u_A 139 DNADYAYICS-NNTIYGTQYQN---------YPK-TKTPLIVDASSD-FFSR--KVDFS----NIALFYGGVQKNA-G-I 198 (361)
T ss_dssp TTSSEEEEES-EETTTTEECSS---------CCC-CSSCEEEECGGG-TTSS--CCCCT----TEEEEEEETTTTS-S-C
T ss_pred CCCCEEEEeC-CCCCcceeCCc---------ccc-cCCEEEEEcccc-cCCC--CCCcc----cCCEEEEechhcc-C-C
Confidence 2334444433 34456887652 344 499999999997 5432 22222 25888886 677 3 3
Q ss_pred ccceeeeecHHHHHhhhcc-CCc----ccc-cccCCC-CCCHHHHHHHHHHHHHHhcc-c---HHHHHHHHHHHHHHHHH
Q psy8199 498 LPLSLVMTTDKIYNSIYYK-NNI----NIF-LHSHSY-SGNPLACCAALATLEIFNKD-N---ILQRISQDMKKITKALT 566 (965)
Q Consensus 498 ~pig~v~~~~~i~~~~~~~-~~~----~~~-~~~~t~-~~~~~~~aaa~a~L~~~~~~-~---~~~~~~~~~~~l~~~L~ 566 (965)
..+|+++.++++.+.+... .+. ... ..+.++ +.|..++.+..++|+.+.+. + ..++.+++.+++.++|+
T Consensus 199 ~G~g~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~gG~~~i~~~~~~l~~~l~~~L~ 278 (361)
T 3m5u_A 199 SGLSCIFIRKDMLERSKNKQIPSMLNYLTHAENQSLFNTPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKATMLYECID 278 (361)
T ss_dssp TTCEEEEEEHHHHHHHHTCCCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CccEEEEEcHHHHhhhcCCCCCceeehHHHhhcCCCCCCccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHH
Confidence 5688999999887665420 000 000 012233 34566777788899988654 3 55667778888888887
Q ss_pred cccCCCce-ee-e--ece-eEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecC---CEEEEeCCcccCHHHHHHHH
Q psy8199 567 SLITHPKI-IN-F--RQK-GMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG---NTVYLMPPYILNKNEIQHMT 638 (965)
Q Consensus 567 ~l~~~~~i-~~-v--~g~-G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~---~~lR~~p~~~~t~~~i~~~~ 638 (965)
++ +++ .. + ..+ ..++.|.+. +. ......+...|.++||.++++. +.+|+++....+.++++.++
T Consensus 279 ~~---~g~~~~~~~~~~rs~~ivsf~~~--~~---~~~~~~~~~~L~~~gI~~~~g~~~~g~iRiS~~~~~t~edId~l~ 350 (361)
T 3m5u_A 279 LS---NGFYKGHADKKDRSLMNVSFNIA--KN---KDLEPLFVKEAEEAGMIGLKGHRILGGIRASIYNALNLDQVKTLC 350 (361)
T ss_dssp TS---TTSEEESSCGGGBCSSEEEEEES--SC---TTHHHHHHHHHHHTTEECCBCCTTTCSEEEECCTTSCHHHHHHHH
T ss_pred HC---CCeeeccCCHHHcCCeEEEEECC--Cc---hhhhHHHHHHHHHCCCEEecCCCccCeEEEEccCCCCHHHHHHHH
Confidence 65 322 11 1 112 235666654 10 0112356678889999987642 56999999999999999999
Q ss_pred Hhhhcc
Q psy8199 639 SAIFQT 644 (965)
Q Consensus 639 ~~l~~~ 644 (965)
+.+.+.
T Consensus 351 ~al~~~ 356 (361)
T 3m5u_A 351 EFMKEF 356 (361)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988754
|
| >3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.05 E-value=9.9e-09 Score=112.66 Aligned_cols=289 Identities=11% Similarity=0.105 Sum_probs=169.2
Q ss_pred CeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecC---CCC
Q psy8199 315 GHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITT---PDS 391 (965)
Q Consensus 315 ~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 391 (965)
...++.+++|-++.+++.++... +.++.++||+ ...-|=+.+-++.+.|-.. ++++. +.
T Consensus 135 ~~~flVnGsTgg~lamilaa~r~----~rpg~d~VIv-pRn~HKSv~kAliL~Gl~P------------v~V~p~~d~~- 196 (501)
T 3hl2_A 135 ANCFVVPMATGMSLTLCFLTLRH----KRPKAKYIIW-PRIDQKSCFKSMITAGFEP------------VVIENVLEGD- 196 (501)
T ss_dssp CEEEEESSCHHHHHHHHHHHHHH----HCTTCCEEEE-ECCCCHHHHHHHHHTTCEE------------EEECEEEETT-
T ss_pred CcEEEECcHHHHHHHHHHHHcCc----ccCCCCEEEE-ecchHHHHHHHHHHcCCeE------------EEEeeeeccc-
Confidence 35677777776777666655442 1123467776 5567888777777666211 11110 00
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhCC-CcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCc
Q psy8199 392 RNINKGNSANEIARCAIFDLEILLKKNH-NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGR 470 (965)
Q Consensus 392 ~~~~~~~~~~~~~~~d~~~le~~l~~~~-~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr 470 (965)
... -|+++++++|++++ +.+++|+..| ....++...+ +++|.++|++||+++++||+|-+.-.
T Consensus 197 ~~~-----------id~e~le~aI~e~ga~~i~~V~~Tt-t~y~p~~~dd----I~eIaeIch~~gIpllVDeAhGah~~ 260 (501)
T 3hl2_A 197 ELR-----------TDLKAVEAKVQELGPDCILCIHSTT-SCFAPRVPDR----LEELAVICANYDIPHIVNNAYGVQSS 260 (501)
T ss_dssp EEE-----------ECHHHHHHHHHHHCGGGEEEEEEEC-SCCTTBCCCC----HHHHHHHHHHHTCCEEEECTTCTTCH
T ss_pred ccC-----------CCHHHHHHHHHhcCCCcEEEEEecC-CCCCCccccc----HHHHHHHHHHcCCeEEEeCcchhhhh
Confidence 000 26899999998874 6788888887 4443445455 99999999999999999999854321
Q ss_pred ccccccccccCC-CcceeeeccccCCCccccee-ee-e-cHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh
Q psy8199 471 TGKFFACEHAEI-WPDFLCLSKGITGGYLPLSL-VM-T-TDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN 546 (965)
Q Consensus 471 ~G~~~~~~~~~~-~pDivt~sK~l~gG~~pig~-v~-~-~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~ 546 (965)
....+..+.+.. ..|+++.|-.-.+ +.|+|. ++ . ++++++.+.. .+-++.++.|.. ....+|..+-
T Consensus 261 ~~~~lp~sA~~~GrAD~vVqS~HK~l-lvpIGG~ii~~~d~e~l~~~~~-------~yPGr~S~Spsl--dl~~tLL~lG 330 (501)
T 3hl2_A 261 KCMHLIQQGARVGRIDAFVQSLDKNF-MVPVGGAIIAGFNDSFIQEISK-------MYPGRASASPSL--DVLITLLSLG 330 (501)
T ss_dssp HHHHHHHHHHHHSCCCEEEEEHHHHH-CCCSSCEEEEESCHHHHHHHHH-------TSCSCBCSHHHH--HHHHHHHHHH
T ss_pred hhhhhHHHHHhcCCCcEEEecccccc-eeecCceEEEeCCHHHHHHHHH-------hCCCCCCCcHHH--HHHHHHHHHH
Confidence 111122222223 4899998842222 245554 33 2 5567766644 122333333332 2333333333
Q ss_pred c---ccHHHHHHHHHHHHHHHHHcccC-CC-ceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcE---Eee--
Q psy8199 547 K---DNILQRISQDMKKITKALTSLIT-HP-KIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELL---LRP-- 616 (965)
Q Consensus 547 ~---~~~~~~~~~~~~~l~~~L~~l~~-~~-~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~---~~~-- 616 (965)
. .++.++..++.++|.++|++++. +. .+-..+..-.-+++.+. ............+...|+.++|- +.+
T Consensus 331 r~Gy~~ll~e~~ela~~L~~~L~~la~~~ge~ll~~~~n~is~a~tl~-~~~~~~~~~~t~~gs~Lf~r~vsG~Rvv~~~ 409 (501)
T 3hl2_A 331 SNGYKKLLKERKEMFSYLSNQIKKLSEAYNERLLHTPHNPISLAMTLK-TLDEHRDKAVTQLGSMLFTRQVSGARVVPLG 409 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCBCCCTTCSSEEEEECT-TSCTTTSCHHHHHHHHHHHTTCCSCEEECTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhcCCCCCceeEEEecc-cccccccccHHHHHHHHHhcCCCcceeecCC
Confidence 2 34677777889999999998843 22 12233333344555553 11111112233566777777762 221
Q ss_pred ------------cC--------CEEEEeCCcccCHHHHHHHHHhhhcccccH
Q psy8199 617 ------------IG--------NTVYLMPPYILNKNEIQHMTSAIFQTFNEL 648 (965)
Q Consensus 617 ------------~~--------~~lR~~p~~~~t~~~i~~~~~~l~~~~~~~ 648 (965)
+| ..+-++....++.+|++.+++++.+++..+
T Consensus 410 ~~~~i~g~~f~~~g~h~~~~~~~yl~~a~aiG~~~~~v~~~~~~l~~~~~~~ 461 (501)
T 3hl2_A 410 SMQTVSGYTFRGFMSHTNNYPCAYLNAASAIGMKMQDVDLFIKRLDRCLKAV 461 (501)
T ss_dssp CCEEETTEEESSTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CceEECCeeecCcccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 11 468888888999999999999998876543
|
| >3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=7.7e-08 Score=107.41 Aligned_cols=302 Identities=10% Similarity=0.051 Sum_probs=161.6
Q ss_pred HHHHHHHHHHhhcCCCC-CeEEEcCChh-HHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccch
Q psy8199 298 PVIKLSEKLSSLTQYKL-GHCFYGSDGA-SAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEI 375 (965)
Q Consensus 298 ~~~~la~~l~~~~~~~~-~~v~~~~sGs-eA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~ 375 (965)
....+...+.+.++... ...++++++| .++..++.+++... .+.+.||+.. .-|-+..-++.+.|-..
T Consensus 99 ~e~~~~~~~~~~lGlp~~~~~~lV~GaT~~~~a~~L~aar~~~-----~~~~~viv~r-~aHkSv~kAl~l~Gl~p---- 168 (450)
T 3bc8_A 99 ITNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKR-----PKAKYIIWPR-IDQKSCFKSMVTAGFEP---- 168 (450)
T ss_dssp HHHHHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHHC-----TTCCEEEEEC-CCCHHHHHHHHHTTCEE----
T ss_pred HHHHHHHHHHHhCCCCCCceEEEECCHHHHHHHHHHHHcchhh-----cCCCEEEEEC-CcHHHHHHHHHHcCCee----
Confidence 34456666666665332 3458888887 66666666666531 1245666664 48888777777666221
Q ss_pred hcccCCCeeEec-CC-CCCCCCCCCChhHHHHHHHHHHHHHHHhCC-CcEEEEEEccccccCCCcccCChHHHHHHHHHH
Q psy8199 376 YTSLLNKTYIIT-TP-DSRNINKGNSANEIARCAIFDLEILLKKNH-NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREIC 452 (965)
Q Consensus 376 ~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~d~~~le~~l~~~~-~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~ 452 (965)
.+++ .+ +.... -|+++|+++|++++ +.+++|+..| -+..+|.+.+ +++|.++|
T Consensus 169 --------~~v~~~~~~~~~~-----------id~~~le~aI~~~~~~~~~~Vv~t~-t~~g~g~~dd----l~~Ia~ia 224 (450)
T 3bc8_A 169 --------VVIENVLEGDELR-----------TDLKAVEAKIQELGPEHILCLHSTT-ACFAPRVPDR----LEELAVIC 224 (450)
T ss_dssp --------EEECCEEETTEEE-----------CCHHHHHHHHHHHCGGGEEEEEEES-SCCTTBCCCC----HHHHHHHH
T ss_pred --------EEEEeeecCccCC-----------cCHHHHHHHHHhcCCCCEEEEEEEC-CcCCCceecC----HHHHHHHH
Confidence 1111 11 00111 27899999998765 5688899988 4444556666 99999999
Q ss_pred HhcCCeEEEeccccCCCcccccccccccCC-Ccceeeec--cccCCCcccceeeee-cHHHHHhhhccCCcccccccCCC
Q psy8199 453 NNYNIHLIADEIAVGCGRTGKFFACEHAEI-WPDFLCLS--KGITGGYLPLSLVMT-TDKIYNSIYYKNNINIFLHSHSY 528 (965)
Q Consensus 453 ~~~g~llI~DEv~tg~gr~G~~~~~~~~~~-~pDivt~s--K~l~gG~~pig~v~~-~~~i~~~~~~~~~~~~~~~~~t~ 528 (965)
++||+++++||+|-+.-+....+..+.+.. ..|.+++| |.+..- ..-+.+.. +++..+.+... ..++.
T Consensus 225 ~~~gi~l~VD~A~G~~~~~~~~l~~~a~~~~~AD~~v~S~HK~l~a~-~~~~~l~~rd~~~~~~~~~~-------~~g~~ 296 (450)
T 3bc8_A 225 ANYDIPHVVNNAYGLQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVP-VGGAIIAGFNEPFIQDISKM-------YPGRA 296 (450)
T ss_dssp HHHTCCEEEECTTTTTCHHHHHHHHHHHHHSCCCEEEEEHHHHHSCC-SSCEEEEESCHHHHHHHHHH-------SCSCB
T ss_pred HHCCCeEEEECCCchhhhhhHhHHHHHhcccCCCEEEECCccCCCch-hccEEEEecCHHHHHHHHHH-------hhcCC
Confidence 999999999999864322211111111211 47999887 433221 23344544 45555554331 11111
Q ss_pred CCCHHHHHHHHHHHHHHhccc---HHHHHHHHHHHHHHHHHccc---CCCceeeeeceeEEEEEEEeecCccchhhHHHH
Q psy8199 529 SGNPLACCAALATLEIFNKDN---ILQRISQDMKKITKALTSLI---THPKIINFRQKGMIWAFDVIIEDPEQIETFSKK 602 (965)
Q Consensus 529 ~~~~~~~aaa~a~L~~~~~~~---~~~~~~~~~~~l~~~L~~l~---~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~ 602 (965)
+.+| +.... .++..+-.+. .+++..++.+++++.|+++. ....+. ....+.-..+.+. .-.........+
T Consensus 297 s~Sp-sL~l~-~~l~~~G~~g~~~~i~~~~~~a~~l~~~l~~~~~~~g~~~l~-~~~~~~~~~~~l~-~~~~~~~~D~tk 372 (450)
T 3bc8_A 297 SASP-SLDVL-ITLLSLGCSGYRKLLKERKEMFVYLSTQLKKLAEAHNERLLQ-TPHNPISLAMTLK-TIDGHHDKAVTQ 372 (450)
T ss_dssp CSHH-HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCC-CTTCSSEEEEECT-TTSSSSSCHHHH
T ss_pred cccH-HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCceecC-CccCCCcceeecc-cccccccCCCce
Confidence 2233 22222 2222222222 33344667788888887774 221121 1111111222221 000000001223
Q ss_pred HHHHHHHcCc---EEe---------------------e-cCCEEEEeCCcccCHHHHHHHHHhhhccc
Q psy8199 603 FFVAALKNEL---LLR---------------------P-IGNTVYLMPPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 603 ~~~~l~~~Gi---~~~---------------------~-~~~~lR~~p~~~~t~~~i~~~~~~l~~~~ 645 (965)
+.-.+...|+ -+. . ....+-+..+...++++++++++++.+..
T Consensus 373 l~i~~~~~g~sG~~v~~~~~~~~~~~~~l~~~gi~~E~~~~~~i~~~~sig~~~~di~~l~~~L~~~~ 440 (450)
T 3bc8_A 373 LGSMLFTRQVSGARAVPLGNVQTVSGHTFRGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCL 440 (450)
T ss_dssp HHHHHHHTTCCSCEEECSCCEEEETTEEEETTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred eEEEecCCCCccceeeecccccchhHHHHHHcCCeeecCCCCcEEEEecCCCCHHHHHHHHHHHHHHH
Confidence 4444545552 111 0 12567788888999999999999887653
|
| >3can_A Pyruvate-formate lyase-activating enzyme; structural genomics, pyruvate-formate lyase-activating enzym MCSG, APC20359.1; 1.80A {Bacteroides vulgatus atcc 8482} | Back alignment and structure |
|---|
Probab=98.66 E-value=3.6e-07 Score=90.51 Aligned_cols=153 Identities=11% Similarity=0.081 Sum_probs=113.3
Q ss_pred CEEEEeeccCCCCcccHHHHHHHHHHHHhcCcEeEE-ecCCCCHHHHHHHHHhCCCeEeccCCC-CHHHHhcccCCCCHH
Q psy8199 733 TRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCL-TLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYE 810 (965)
Q Consensus 733 ~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~~~~i~~-~~~~~~~e~l~~Lk~aG~~~i~i~~es-~~~~~~~i~~~~~~~ 810 (965)
..+.|+|| .|+.. .+.+.++++.+++.++.+++ ++|.++++.++.|.+. ++.+.+++++ +++.++++++. +++
T Consensus 5 ~~v~~tGG-EPll~--~~~~~~l~~~~~~~g~~~~l~TNG~l~~~~~~~l~~~-~d~v~isld~~~~~~~~~~~g~-~~~ 79 (182)
T 3can_A 5 GGVTFCGG-EPLLH--PEFLIDILKRCGQQGIHRAVDTTLLARKETVDEVMRN-CELLLIDLKSMDSTVHQTFCDV-PNE 79 (182)
T ss_dssp CCEEECSS-TGGGS--HHHHHHHHHHHHHTTCCEEEECTTCCCHHHHHHHHHT-CSEEEEECCCSCHHHHHHHHSS-CSH
T ss_pred CEEEEEcc-cccCC--HHHHHHHHHHHHHCCCcEEEECCCCCCHHHHHHHHhh-CCEEEEECCCCCHHHHHHHhCC-CHH
Confidence 45778775 46444 34456888888877777655 4677889999999998 8999999999 89999999864 469
Q ss_pred HHHHHHHHHHHcCCceeeeEEE--ecCCCHHHHHHHHHHHHhc-CCCC-CceeeccccccCCCC---------CCCCCCC
Q psy8199 811 NRLNTLKNVRNVGINICCGGII--GLSESRDQRAELIFQLANL-NPYP-ESVPINNLVQIKGTP---------LYGSSIL 877 (965)
Q Consensus 811 ~~~~~i~~~~~~Gi~v~~~~i~--Gl~et~ed~~~~l~~l~~l-~~~~-~~i~~~~~~P~~gT~---------l~~~~~~ 877 (965)
..+++++.+.+.|+++...+++ |+.++.+++.+.++++.++ + + ..+.+.+|.|..... +.+.+++
T Consensus 80 ~i~~~i~~l~~~g~~v~i~~~v~~~~n~n~~~~~~~~~~~~~~~g--~~~~~~l~~~~p~g~~~~~~l~~~y~~~~~~~~ 157 (182)
T 3can_A 80 LILKNIRRVAEADFPYYIRIPLIEGVNADEKNIKLSAEFLASLPR--HPEIINLLPYHDIGKGKHAKLGSIYNPKGYKMQ 157 (182)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEECBTTTCSHHHHHHHHHHHHHSSS--CCSEEEEEECCC------------------CCB
T ss_pred HHHHHHHHHHhCCCeEEEEEEEECCCCCCHHHHHHHHHHHHhCcC--ccceEEEecCcccCHHHHHHhCCcCcccCCCCC
Confidence 9999999999999877766554 3448899999999999999 7 7 788889999876543 3334555
Q ss_pred CHHH--HHHHHHHHHHH
Q psy8199 878 DPLE--FIRTIAVARIT 892 (965)
Q Consensus 878 ~~~~--~~~~ia~~R~~ 892 (965)
+.++ +.++...++..
T Consensus 158 ~~e~~~l~~~~~~~~~~ 174 (182)
T 3can_A 158 TPSEEVQQQCIQILTDY 174 (182)
T ss_dssp CCCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHc
Confidence 6666 77777777654
|
| >2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=2.6e-05 Score=83.21 Aligned_cols=223 Identities=13% Similarity=0.100 Sum_probs=154.0
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHhc-CcEeEEecCCCCHHHHHHHHHhCCCeEeccC
Q psy8199 715 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI-GLETCLTLGMLNENQAYRLKKVGLDYYNHNL 793 (965)
Q Consensus 715 ~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~-~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~~ 793 (965)
++.++.++.++.+.+.|++.+-+.++..+-...-+....+.++.+++. +..+..-. .+.+.++...++|++.+.+..
T Consensus 24 ~~~e~k~~i~~~L~~~Gv~~IE~g~~~~~~~~p~~~d~~~~~~~~~~~~~~~~~~l~--~~~~~i~~a~~ag~~~v~i~~ 101 (298)
T 2cw6_A 24 VSTPVKIKLIDMLSEAGLSVIETTSFVSPKWVPQMGDHTEVLKGIQKFPGINYPVLT--PNLKGFEAAVAAGAKEVVIFG 101 (298)
T ss_dssp CCHHHHHHHHHHHHHTTCSEECCEECCCTTTCGGGTTHHHHHHHSCCCTTCBCCEEC--CSHHHHHHHHHTTCSEEEEEE
T ss_pred CCHHHHHHHHHHHHHcCcCEEEECCCcCcccccccCCHHHHHHHHhhCCCCEEEEEc--CCHHhHHHHHHCCCCEEEEEe
Confidence 789999999999999999999997764431001011223455555442 44443322 478999999999999999977
Q ss_pred CCCHHH-HhcccCC--CCHHHHHHHHHHHHHcCCceeeeEEEecC------CCHHHHHHHHHHHHhcCCCCCceeecccc
Q psy8199 794 DTSPKL-YGDIIST--RDYENRLNTLKNVRNVGINICCGGIIGLS------ESRDQRAELIFQLANLNPYPESVPINNLV 864 (965)
Q Consensus 794 es~~~~-~~~i~~~--~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~------et~ed~~~~l~~l~~l~~~~~~i~~~~~~ 864 (965)
-+++.. .+++++. .+++...++++.+++.|+.+..++++-++ .+.+.+.+.++.+.+++ ++.|.+.
T Consensus 102 ~~sd~~~~~~~~~~~~e~l~~~~~~i~~a~~~G~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~G--a~~i~l~--- 176 (298)
T 2cw6_A 102 AASELFTKKNINCSIEESFQRFDAILKAAQSANISVRGYVSCALGCPYEGKISPAKVAEVTKKFYSMG--CYEISLG--- 176 (298)
T ss_dssp ESCHHHHHHHHSCCHHHHHHHHHHHHHHHHHTTCEEEEEEETTTCBTTTBSCCHHHHHHHHHHHHHTT--CSEEEEE---
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEEEeeCCcCCCCCHHHHHHHHHHHHHcC--CCEEEec---
Confidence 666543 3444443 35678888899999999999888875442 47899999999999999 8877655
Q ss_pred ccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccch--hhHHHHhhcCccEEee-----CC-ccc--cCCC
Q psy8199 865 QIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGE--TTQAFCFLAGANSIFY-----GD-KLL--TTDN 934 (965)
Q Consensus 865 P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~--~~~~~~l~~Gan~~~~-----g~-~~~--t~~~ 934 (965)
.| ....+|.++.+++...|..+|+..+.+-+. +..+. .....|+.+||+.+-. |+ .+. .+++
T Consensus 177 ---DT----~G~~~P~~~~~lv~~l~~~~~~~~i~~H~H-n~~Gla~An~laA~~aGa~~vd~tv~GlG~cp~a~g~aGN 248 (298)
T 2cw6_A 177 ---DT----IGVGTPGIMKDMLSAVMQEVPLAALAVHCH-DTYGQALANTLMALQMGVSVVDSSVAGLGGCPYAQGASGN 248 (298)
T ss_dssp ---ET----TSCCCHHHHHHHHHHHHHHSCGGGEEEEEB-CTTSCHHHHHHHHHHTTCCEEEEBTTSCCCCTTSCSSCCB
T ss_pred ---CC----CCCcCHHHHHHHHHHHHHhCCCCeEEEEEC-CCCchHHHHHHHHHHhCCCEEEeecccccCCCCCCCCcCC
Confidence 44 244689999999999999998655555432 22222 2335688999995422 22 010 2344
Q ss_pred CCChhhHHHHHHcCCCcc
Q psy8199 935 TKTNDDSKLLKKLGINTR 952 (965)
Q Consensus 935 ~~~~~~~~~~~~~g~~~~ 952 (965)
...++...+++..|+.+.
T Consensus 249 ~~~E~lv~~l~~~g~~~~ 266 (298)
T 2cw6_A 249 LATEDLVYMLEGLGIHTG 266 (298)
T ss_dssp CBHHHHHHHHHHHTCBCC
T ss_pred hhHHHHHHHHHhcCCCCC
Confidence 456788999999998753
|
| >3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.25 E-value=4.3e-05 Score=83.75 Aligned_cols=288 Identities=13% Similarity=0.115 Sum_probs=151.5
Q ss_pred HHHHHHH-HHHhhcCCCCC----eEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCc-----cCCccc--ccc
Q psy8199 298 PVIKLSE-KLSSLTQYKLG----HCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSY-----HGETLG--ALA 365 (965)
Q Consensus 298 ~~~~la~-~l~~~~~~~~~----~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~y-----Hg~~~~--~~~ 365 (965)
..+.||. +..++++.... .|. --||+.||.+++....+ ++++|+.++-.- ||+... ..+
T Consensus 100 ~iE~la~~rak~lF~a~~A~w~VNVQ-P~SGs~AN~avy~All~--------PGD~ilg~~l~~GGHltHg~~~~~~~v~ 170 (490)
T 3ou5_A 100 EIELLCQRRALEAFDLDPAQWGVNVQ-PYSGSPANLAVYTALLQ--------PHDRIMGLDLPDGGHLTHGYMSDVKRIS 170 (490)
T ss_dssp HHHHHHHHHHHHHTTCCTTTEEEECC-CSSHHHHHHHHHHHHCC---------CCCEECBC-------------------
T ss_pred HHHHHHHHHHHHHhCCCccccCCCCC-cCCHHHHHHHHHHHHcC--------CCCEEEecccCCCCcccccccCCCcccc
Confidence 3455555 44567765444 233 46899999999887754 678888887532 222110 111
Q ss_pred ccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHH
Q psy8199 366 VTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYL 445 (965)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l 445 (965)
.++. . ...++++-+ .+ -...|.+++++...++.+ ..||+-. +..--..+ +
T Consensus 171 ~sg~----------~--~~~~~Y~vd--------~~-t~~IDyd~~~~~A~~~kP--klIi~G~---SaY~r~id----~ 220 (490)
T 3ou5_A 171 ATSI----------F--FESMPYKLN--------PK-TGLIDYNQLALTARLFRP--RLIIAGT---SAYARLID----Y 220 (490)
T ss_dssp ---------------------CBCEE--------TT-TTEECHHHHHHHHHHHCC--SEEEECC---SSCCSCCC----H
T ss_pred cccc----------c--ccccccccC--------CC-CCcccHHHHHHHHhhcCC--CeEEECC---ccCccccC----H
Confidence 1110 0 011111100 00 001367888877766544 4466633 22222233 8
Q ss_pred HHHHHHHHhcCCeEEEecccc-CCCcccc-cccccccCCCcceeeec--cccCCCcccceeeeecH--------------
Q psy8199 446 KLVREICNNYNIHLIADEIAV-GCGRTGK-FFACEHAEIWPDFLCLS--KGITGGYLPLSLVMTTD-------------- 507 (965)
Q Consensus 446 ~~l~~l~~~~g~llI~DEv~t-g~gr~G~-~~~~~~~~~~pDivt~s--K~l~gG~~pig~v~~~~-------------- 507 (965)
++++++|++.|++|++|=+|. |+--.|. ...+. ..|+||.+ |.|.| -+-|.+++++
T Consensus 221 ~~~reIAd~vGA~Lm~DmAHiaGLVA~g~~psP~~----~ADvVTtTTHKTLrG--PrGG~Il~~~~~~~~~~k~~~~~~ 294 (490)
T 3ou5_A 221 ARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFK----HADIVTTTTHKTLRG--ARSGLIFYRKGVKAVDPKTGREIP 294 (490)
T ss_dssp HHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGG----TCSEEEEESSSTTCS--CSCEEEEEECSEEEECC--CCEEE
T ss_pred HHHHHHHhhcccEEEechhhhhhhhcccccCCccc----cceEEeccccccccC--CCceEEEeccccccccccccchhH
Confidence 999999999999999998875 2211111 11222 26899776 77777 2556666665
Q ss_pred -HHHHhhhccCCcccccccCCCCCCHHHHHHHHH-HHHH-Hhc--ccHHHHHHHHHHHHHHHHHcccCCCceeeeec--e
Q psy8199 508 -KIYNSIYYKNNINIFLHSHSYSGNPLACCAALA-TLEI-FNK--DNILQRISQDMKKITKALTSLITHPKIINFRQ--K 580 (965)
Q Consensus 508 -~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a-~L~~-~~~--~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g--~ 580 (965)
++.+.+.. ..+-+..+|+-.-..||.+ ++.. +.. .+..+++.++.+.|.+.|.+. ++..+.| .
T Consensus 295 ~~~~kkin~------aVFPg~qggp~~h~IAAkAVaf~Ea~~p~fk~Ya~qVv~NAkaLA~~L~~~----G~~vvsGgTd 364 (490)
T 3ou5_A 295 YTFEDRINF------AVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLER----GYSLVSGGTD 364 (490)
T ss_dssp CCCHHHHHH------HHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT----TCEEGGGSCS
T ss_pred HHHHHHHHh------hcCccccccchHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhC----CCeeecCCCC
Confidence 23333332 1112333343333333332 2432 221 346778888888898888764 4443333 2
Q ss_pred eEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEe----ec------CCEEEEeCCcc----cCHHHHHHHHHhhhccc
Q psy8199 581 GMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLR----PI------GNTVYLMPPYI----LNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 581 G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~----~~------~~~lR~~p~~~----~t~~~i~~~~~~l~~~~ 645 (965)
..++.+++. .. .-......+.|.+.||.+. |+ ...|||-.|.. +.++++.++.+-+.+++
T Consensus 365 nHlvLvDl~-~~----g~tG~~ae~~Le~agItvNkN~iP~D~sp~~~SGiRiGTpa~TtRG~~e~dm~~IA~~I~~~l 438 (490)
T 3ou5_A 365 NHLVLVDLR-PK----GLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGV 438 (490)
T ss_dssp SSEEEEECG-GG----TCCHHHHHHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred ceEEEEecc-cc----CCCHHHHHHHHHHcCcEECCCCCCCCCCCCCCCeeEECCHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 336666664 11 1113345577888999885 22 14689986654 56788877776665544
|
| >1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp} | Back alignment and structure |
|---|
Probab=98.17 E-value=0.00021 Score=76.01 Aligned_cols=225 Identities=11% Similarity=0.066 Sum_probs=152.8
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHh-cCcEeEEecCCCCHHHHHHHHHhCCCeEecc
Q psy8199 714 ILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDYYNHN 792 (965)
Q Consensus 714 ~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~-~~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~ 792 (965)
.++.++.++.++.+.+.|++.|-+.++..+-....+....+.++.+++ .+..+..-. .+.+.++...++|++.+.+.
T Consensus 24 ~~~~e~k~~i~~~L~~~Gv~~IE~g~~~~~~~~p~~~d~~~~~~~~~~~~~~~~~~l~--~~~~~i~~a~~~g~~~v~i~ 101 (307)
T 1ydo_A 24 WIATEDKITWINQLSRTGLSYIEITSFVHPKWIPALRDAIDVAKGIDREKGVTYAALV--PNQRGLENALEGGINEACVF 101 (307)
T ss_dssp CCCHHHHHHHHHHHHTTTCSEEEEEECSCTTTCGGGTTHHHHHHHSCCCTTCEEEEEC--CSHHHHHHHHHHTCSEEEEE
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEECCCcCcccccccCCHHHHHHHhhhcCCCeEEEEe--CCHHhHHHHHhCCcCEEEEE
Confidence 388999999999999999999999775443110101122234454443 345554332 36889999999999999998
Q ss_pred CCCCHHH-HhcccCC--CCHHHHHHHHHHHHHcCCceeeeEEEecC------CCHHHHHHHHHHHHhcCCCCCceeeccc
Q psy8199 793 LDTSPKL-YGDIIST--RDYENRLNTLKNVRNVGINICCGGIIGLS------ESRDQRAELIFQLANLNPYPESVPINNL 863 (965)
Q Consensus 793 ~es~~~~-~~~i~~~--~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~------et~ed~~~~l~~l~~l~~~~~~i~~~~~ 863 (965)
.-+++-. .+++++. ...+...++++.+++.|+.+..++++-++ .+.+.+.+.++.+.+.+ ++.|.+.
T Consensus 102 ~~~sd~~~~~~l~~s~~e~l~~~~~~v~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G--a~~i~l~-- 177 (307)
T 1ydo_A 102 MSASETHNRKNINKSTSESLHILKQVNNDAQKANLTTRAYLSTVFGCPYEKDVPIEQVIRLSEALFEFG--ISELSLG-- 177 (307)
T ss_dssp EESSHHHHHTTTCSCHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCBTTTBCCCHHHHHHHHHHHHHHT--CSCEEEE--
T ss_pred eecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEEecCCcCCCCCHHHHHHHHHHHHhcC--CCEEEEc--
Confidence 7666543 2334332 23566788899999999999877776553 46899999999999999 7877654
Q ss_pred cccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceecccccc-ccchhhHHHHhhcCccEEee-----CCccc---cCCC
Q psy8199 864 VQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRK-EMGETTQAFCFLAGANSIFY-----GDKLL---TTDN 934 (965)
Q Consensus 864 ~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~-~~~~~~~~~~l~~Gan~~~~-----g~~~~---t~~~ 934 (965)
.| ....+|.++.+++...|..+|+..+.+-+.=. .+.......|+.+||+.+=. |+-.. .+++
T Consensus 178 ----DT----~G~~~P~~v~~lv~~l~~~~~~~~l~~H~Hnd~Gla~AN~laAv~aGa~~vd~tv~GlGecp~a~graGN 249 (307)
T 1ydo_A 178 ----DT----IGAANPAQVETVLEALLARFPANQIALHFHDTRGTALANMVTALQMGITVFDGSAGGLGGCPYAPGSSGN 249 (307)
T ss_dssp ----CS----SCCCCHHHHHHHHHHHHTTSCGGGEEEECBGGGSCHHHHHHHHHHHTCCEEEEBGGGCCEETTEEEEECB
T ss_pred ----CC----CCCcCHHHHHHHHHHHHHhCCCCeEEEEECCCCchHHHHHHHHHHhCCCEEEEcccccCCCCCCCCCCCC
Confidence 45 23468999999999999888865554444221 22223345688999995421 22000 2344
Q ss_pred CCChhhHHHHHHcCCCcc
Q psy8199 935 TKTNDDSKLLKKLGINTR 952 (965)
Q Consensus 935 ~~~~~~~~~~~~~g~~~~ 952 (965)
...++...+|+..|+.+.
T Consensus 250 ~~~E~lv~~L~~~g~~t~ 267 (307)
T 1ydo_A 250 AATEDIVYMLEQMDIKTN 267 (307)
T ss_dssp CBHHHHHHHHHHTTCBCC
T ss_pred hhHHHHHHHHHhcCCCCC
Confidence 567889999999998753
|
| >1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=98.16 E-value=0.00013 Score=77.76 Aligned_cols=223 Identities=13% Similarity=0.055 Sum_probs=151.6
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHhc-CcEeEEecCCCCHHHHHHHHHhCCCeEeccC
Q psy8199 715 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI-GLETCLTLGMLNENQAYRLKKVGLDYYNHNL 793 (965)
Q Consensus 715 ~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~-~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~~ 793 (965)
++.++.++.++.+.+.|+..+.+.+...+-....+....+.++.+++. ++.+.... .+.+.+++..++|++.+.+.+
T Consensus 23 ~~~e~k~~i~~~L~~~Gv~~IE~g~~~~~~~~p~~~~~~e~~~~i~~~~~~~v~~l~--~n~~~i~~a~~~G~~~V~i~~ 100 (295)
T 1ydn_A 23 VPTADKIALINRLSDCGYARIEATSFVSPKWVPQLADSREVMAGIRRADGVRYSVLV--PNMKGYEAAAAAHADEIAVFI 100 (295)
T ss_dssp CCHHHHHHHHHHHTTTTCSEEEEEECSCTTTCGGGTTHHHHHHHSCCCSSSEEEEEC--SSHHHHHHHHHTTCSEEEEEE
T ss_pred cCHHHHHHHHHHHHHcCcCEEEEccCcCccccccccCHHHHHHHHHhCCCCEEEEEe--CCHHHHHHHHHCCCCEEEEEE
Confidence 889999999999999999999987653321001112344666666553 66665544 578999999999999999987
Q ss_pred CCCHHHHhc-ccCC--CCHHHHHHHHHHHHHcCCceeeeEE--EecC----CCHHHHHHHHHHHHhcCCCCCceeecccc
Q psy8199 794 DTSPKLYGD-IIST--RDYENRLNTLKNVRNVGINICCGGI--IGLS----ESRDQRAELIFQLANLNPYPESVPINNLV 864 (965)
Q Consensus 794 es~~~~~~~-i~~~--~~~~~~~~~i~~~~~~Gi~v~~~~i--~Gl~----et~ed~~~~l~~l~~l~~~~~~i~~~~~~ 864 (965)
-+|+...+. ++.+ .+.+...++++.+++.|+.+...+. +|.+ .+.+++.+.++.+.+.+ ++.+.+.
T Consensus 101 ~~S~~h~~~~~~~~~~e~~~~~~~~v~~a~~~G~~V~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~G--~d~i~l~--- 175 (295)
T 1ydn_A 101 SASEGFSKANINCTIAESIERLSPVIGAAINDGLAIRGYVSCVVECPYDGPVTPQAVASVTEQLFSLG--CHEVSLG--- 175 (295)
T ss_dssp ESCHHHHHHHTSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSEETTTEECCHHHHHHHHHHHHHHT--CSEEEEE---
T ss_pred ecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEEEecCCcCCCCCHHHHHHHHHHHHhcC--CCEEEec---
Confidence 566544332 2222 2455667778999999999885555 4432 57899999999999999 8887766
Q ss_pred ccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccc--cccccchhhHHHHhhcCccEEeeC-----Cc-cc--cCCC
Q psy8199 865 QIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSA--GRKEMGETTQAFCFLAGANSIFYG-----DK-LL--TTDN 934 (965)
Q Consensus 865 P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~--~~~~~~~~~~~~~l~~Gan~~~~g-----~~-~~--t~~~ 934 (965)
.| ....+|.++.+++...|..+|...+.+-+ ... +.......|+.+||+.+-.. +- +. .+++
T Consensus 176 ---Dt----~G~~~P~~~~~lv~~l~~~~~~~~l~~H~Hn~~G-la~an~l~Ai~aG~~~vd~sv~GlG~cp~a~g~~GN 247 (295)
T 1ydn_A 176 ---DT----IGRGTPDTVAAMLDAVLAIAPAHSLAGHYHDTGG-RALDNIRVSLEKGLRVFDASVGGLGGCPFAPGAKGN 247 (295)
T ss_dssp ---ET----TSCCCHHHHHHHHHHHHTTSCGGGEEEEEBCTTS-CHHHHHHHHHHHTCCEEEEBTTCCSCBTTBTTSCCB
T ss_pred ---CC----CCCcCHHHHHHHHHHHHHhCCCCeEEEEECCCcc-hHHHHHHHHHHhCCCEEEeccccCCCCCCCCCCcCC
Confidence 22 22368899999999999888754344433 221 22333457889999964322 11 11 2344
Q ss_pred CCChhhHHHHHHcCCCcc
Q psy8199 935 TKTNDDSKLLKKLGINTR 952 (965)
Q Consensus 935 ~~~~~~~~~~~~~g~~~~ 952 (965)
...++.+.+++..|+.+.
T Consensus 248 ~~~e~lv~~l~~~g~~~~ 265 (295)
T 1ydn_A 248 VDTVAVVEMLHEMGFETG 265 (295)
T ss_dssp CBHHHHHHHHHHTTCBCC
T ss_pred hhHHHHHHHHHhcCCCCC
Confidence 467888999999998753
|
| >4fhd_A Spore photoproduct lyase; partial TIM-barrel, DNA repair, damaged DNA; HET: EEM 0TT; 2.00A {Geobacillus thermodenitrificans} PDB: 4fhc_A* 4fhg_A* 4fhe_A* 4fhf_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=5e-06 Score=89.53 Aligned_cols=162 Identities=15% Similarity=0.219 Sum_probs=97.5
Q ss_pred eEeeccCCCCCCCCCCCCCCcCCCCcccccCCCHHHHHHHHHH-HHHCCCC--EEEEeeccCCCCcccHHHHHH----HH
Q psy8199 684 LLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQK-AKSDGAT--RFCMGAAWRELKDRDLDNIEN----MI 756 (965)
Q Consensus 684 ~i~~~s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~-~~~~g~~--~i~l~~g~~~~~~~~~~~~~~----~~ 756 (965)
.++. ..||+++|.||.....++....-.-..+.+++++.+.. +.+.+.+ .|.+.+..++ .++|.... ++
T Consensus 110 ~ln~-y~GC~~~C~YCYl~~~~~~~~~I~v~vN~~eiL~~l~~~l~~~~~~~~~i~~g~~TDp---yp~E~~~~ltr~~l 185 (368)
T 4fhd_A 110 AIPL-ATGCMGHCHYCYLQTTLGSKPYIRVYVNLDDIFAQAQKYINERAPEITRFEAACTSDI---VGIDHLTHSLKKAI 185 (368)
T ss_dssp ECCS-EEBCSCCCTTCTHHHHTTTCCSEEEECCHHHHHHHHHHHHHHHTTSCEEEESCSSBCH---HHHHTTTCHHHHHH
T ss_pred eeCC-ccCCCCCCceEeccccCCCCCeEEEecCHHHHHHHHHHHHhhcCCCceEEEEEcCCCc---chhhHHHhHHHHHH
Confidence 3566 79999999999755443321101113678999998765 3333433 3444333333 24454433 33
Q ss_pred HHHHhc-CcEeEEecCCCCHHHHHHHHHhCCCeEeccCCCCHHHHhcccC-CCCHHHHHHHHHHHHHcCCceeeeEEEec
Q psy8199 757 CEVKKI-GLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIIS-TRDYENRLNTLKNVRNVGINICCGGIIGL 834 (965)
Q Consensus 757 ~~i~~~-~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~~es~~~~~~~i~~-~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl 834 (965)
+.+.+. +..+.+......-+.+..|...|...+.+++.+ +++.+.+-+ .-+.+.++++++.+.++|++++..+.-=+
T Consensus 186 e~l~~~~~~~v~i~TKs~lid~L~~l~~~~~v~V~~Sitt-~~l~r~~EP~aps~~~RL~Ai~~l~~aGipv~v~iaPIi 264 (368)
T 4fhd_A 186 EFIGATDYGRLRFVTKYEHVDHLLDARHNGKTRFRFSINS-RYVINHFEPGTSSFDGRLAAARKVAGAGYKLGFVVAPIY 264 (368)
T ss_dssp HHHHHCSSEEEEEEESCCCCGGGTTCCCTTCEEEEEEECC-HHHHHHHCTTSCCHHHHHHHHHHHHHTTCEEEEEEEEEC
T ss_pred HHHHhCCCceEEEEeCCcCHHHHHhcCcCCceEEEEEEcC-HHHHHHcCCCCCCHHHHHHHHHHHHHCCCeEEEEEeCcC
Confidence 444443 434444222222234444545555566666644 677777765 45799999999999999999987766555
Q ss_pred -CCCH-HHHHHHHHHHHh
Q psy8199 835 -SESR-DQRAELIFQLAN 850 (965)
Q Consensus 835 -~et~-ed~~~~l~~l~~ 850 (965)
++++ ++..+.++.+.+
T Consensus 265 P~~~~~e~y~~lle~l~~ 282 (368)
T 4fhd_A 265 RHEGWERGYFELFQELAR 282 (368)
T ss_dssp CCTTHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 3544 678888887766
|
| >2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.06 E-value=0.00025 Score=75.62 Aligned_cols=225 Identities=14% Similarity=0.064 Sum_probs=152.0
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHh-cCcEeEEecCCCCHHHHHHHHHhCCCeEecc
Q psy8199 714 ILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDYYNHN 792 (965)
Q Consensus 714 ~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~-~~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~ 792 (965)
.++.++.++.++.+.+.|+..|...++..+-....+....+.++.+.+ .+..+.... .+.+.+++..++|++.+.+.
T Consensus 26 ~~~~e~k~~i~~~L~~~Gv~~IE~g~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~--~~~~~i~~a~~aG~~~v~i~ 103 (302)
T 2ftp_A 26 PIEVADKIRLVDDLSAAGLDYIEVGSFVSPKWVPQMAGSAEVFAGIRQRPGVTYAALA--PNLKGFEAALESGVKEVAVF 103 (302)
T ss_dssp CCCHHHHHHHHHHHHHTTCSEEEEEECSCTTTCGGGTTHHHHHHHSCCCTTSEEEEEC--CSHHHHHHHHHTTCCEEEEE
T ss_pred CCCHHHHHHHHHHHHHcCcCEEEECCCcCccccccccCHHHHHHHhhhcCCCEEEEEe--CCHHHHHHHHhCCcCEEEEE
Confidence 378999999999999999999998765433111111222344555543 455665544 48999999999999999987
Q ss_pred CCCCHHH-HhcccCC--CCHHHHHHHHHHHHHcCCceeeeEEEecC------CCHHHHHHHHHHHHhcCCCCCceeeccc
Q psy8199 793 LDTSPKL-YGDIIST--RDYENRLNTLKNVRNVGINICCGGIIGLS------ESRDQRAELIFQLANLNPYPESVPINNL 863 (965)
Q Consensus 793 ~es~~~~-~~~i~~~--~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~------et~ed~~~~l~~l~~l~~~~~~i~~~~~ 863 (965)
.-+++-. .++++.+ .+.+...+.++.+++.|+.+...+.+-.+ .+.+.+.+.++.+.+.+ ++.+.+.
T Consensus 104 ~~~s~~~~~~~~~~s~ee~l~~~~~~v~~a~~~G~~V~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~G--~d~i~l~-- 179 (302)
T 2ftp_A 104 AAASEAFSQRNINCSIKDSLERFVPVLEAARQHQVRVRGYISCVLGCPYDGDVDPRQVAWVARELQQMG--CYEVSLG-- 179 (302)
T ss_dssp EESCHHHHHHHHSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCBTTTBCCCHHHHHHHHHHHHHTT--CSEEEEE--
T ss_pred EecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEEEeeCCcCCCCCHHHHHHHHHHHHHcC--CCEEEEe--
Confidence 6555533 2344332 25567788889999999998766665433 46789999999999999 8877655
Q ss_pred cccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceecccccc-ccchhhHHHHhhcCccEEee-----CCccc---cCCC
Q psy8199 864 VQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRK-EMGETTQAFCFLAGANSIFY-----GDKLL---TTDN 934 (965)
Q Consensus 864 ~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~-~~~~~~~~~~l~~Gan~~~~-----g~~~~---t~~~ 934 (965)
.| .....|.++.+++...|..+|+..+.+-+.=. .+.......|+.+||+.+=. |+-.. .+++
T Consensus 180 ----DT----~G~~~P~~~~~lv~~l~~~~~~~~l~~H~Hn~~Gla~An~laAv~aGa~~vd~tv~GlG~cp~a~gr~GN 251 (302)
T 2ftp_A 180 ----DT----IGVGTAGATRRLIEAVASEVPRERLAGHFHDTYGQALANIYASLLEGIAVFDSSVAGLGGCPYAKGATGN 251 (302)
T ss_dssp ----ES----SSCCCHHHHHHHHHHHTTTSCGGGEEEEEBCTTSCHHHHHHHHHHTTCCEEEEBGGGCCBCGGGTTCBCB
T ss_pred ----CC----CCCcCHHHHHHHHHHHHHhCCCCeEEEEeCCCccHHHHHHHHHHHhCCCEEEecccccCCCCCCCCCCCC
Confidence 33 12357899999999998888755454444211 22334456789999995432 22000 2344
Q ss_pred CCChhhHHHHHHcCCCcc
Q psy8199 935 TKTNDDSKLLKKLGINTR 952 (965)
Q Consensus 935 ~~~~~~~~~~~~~g~~~~ 952 (965)
...++...+|+..|+.+.
T Consensus 252 ~~~E~lv~~l~~~g~~~~ 269 (302)
T 2ftp_A 252 VASEDVLYLLNGLEIHTG 269 (302)
T ss_dssp CBHHHHHHHHHHTTCBCC
T ss_pred hhHHHHHHHHHhcCCCCC
Confidence 567889999999998753
|
| >3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=0.00045 Score=74.71 Aligned_cols=217 Identities=14% Similarity=0.120 Sum_probs=148.8
Q ss_pred CCHHHHHHHHH-HHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHH---h-cCcEeEEecCCCCHHHHHHHHHhCCCeE
Q psy8199 715 LSIESVITAAQ-KAKSDGATRFCMGAAWRELKDRDLDNIENMICEVK---K-IGLETCLTLGMLNENQAYRLKKVGLDYY 789 (965)
Q Consensus 715 ~~~eei~~~~~-~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~---~-~~~~i~~~~~~~~~e~l~~Lk~aG~~~i 789 (965)
++.++.++.++ .+.+.|++.+-+.++... ..+++.+..+.+... . .+..+..-.- ....++...++|++.+
T Consensus 38 ~~~~~k~~i~~~~L~~~Gv~~IE~g~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~i~~l~~--~~~~i~~a~~~g~~~v 113 (337)
T 3ble_A 38 FSTSEKLNIAKFLLQKLNVDRVEIASARVS--KGELETVQKIMEWAATEQLTERIEILGFVD--GNKTVDWIKDSGAKVL 113 (337)
T ss_dssp CCHHHHHHHHHHHHHTTCCSEEEEEETTSC--TTHHHHHHHHHHHHHHTTCGGGEEEEEESS--TTHHHHHHHHHTCCEE
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEeCCCCC--hhHHHHHHHHHhhhhhhccCCCCeEEEEcc--chhhHHHHHHCCCCEE
Confidence 78999999999 999999999998665432 233444444333211 1 2333332211 2238999999999999
Q ss_pred eccCCCCHHHH-hcccCC--CCHHHHHHHHHHHHHcCCceeeeEEE---ecCCCHHHHHHHHHHHHhcCCCCCceeeccc
Q psy8199 790 NHNLDTSPKLY-GDIIST--RDYENRLNTLKNVRNVGINICCGGII---GLSESRDQRAELIFQLANLNPYPESVPINNL 863 (965)
Q Consensus 790 ~i~~es~~~~~-~~i~~~--~~~~~~~~~i~~~~~~Gi~v~~~~i~---Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~ 863 (965)
.+..-+++... +.++.. ...+...++++.+++.|+.+..++.. +...+.+.+.+.++.+.+.+ ++.|.+.
T Consensus 114 ~i~~~~s~~~~~~~~~~s~~e~l~~~~~~v~~ak~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~G--a~~i~l~-- 189 (337)
T 3ble_A 114 NLLTKGSLHHLEKQLGKTPKEFFTDVSFVIEYAIKSGLKINVYLEDWSNGFRNSPDYVKSLVEHLSKEH--IERIFLP-- 189 (337)
T ss_dssp EEEEECSHHHHHHHTCCCHHHHHHHHHHHHHHHHHTTCEEEEEEETHHHHHHHCHHHHHHHHHHHHTSC--CSEEEEE--
T ss_pred EEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCcCCHHHHHHHHHHHHHcC--CCEEEEe--
Confidence 99877765433 344432 24667778889999999998877665 43367888999999999999 7777654
Q ss_pred cccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccc--hhhHHHHhhcCccEEe---e--CCccccCCCCC
Q psy8199 864 VQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMG--ETTQAFCFLAGANSIF---Y--GDKLLTTDNTK 936 (965)
Q Consensus 864 ~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~--~~~~~~~l~~Gan~~~---~--g~~~~t~~~~~ 936 (965)
.| ....+|.++.+++...|..+|+..+.+-+.= +.+ ......|+.+||+.+- . |+ .+++..
T Consensus 190 ----DT----~G~~~P~~v~~lv~~l~~~~p~~~i~~H~Hn-d~GlA~AN~laAv~aGa~~vd~tv~GlG~---~aGN~~ 257 (337)
T 3ble_A 190 ----DT----LGVLSPEETFQGVDSLIQKYPDIHFEFHGHN-DYDLSVANSLQAIRAGVKGLHASINGLGE---RAGNTP 257 (337)
T ss_dssp ----CT----TCCCCHHHHHHHHHHHHHHCTTSCEEEECBC-TTSCHHHHHHHHHHTTCSEEEEBGGGCSS---TTCBCB
T ss_pred ----cC----CCCcCHHHHHHHHHHHHHhcCCCeEEEEecC-CcchHHHHHHHHHHhCCCEEEEecccccc---cccchh
Confidence 44 2446899999999999999986655554432 222 2334568899999543 2 23 455567
Q ss_pred ChhhHHHHHHc-CCCc
Q psy8199 937 TNDDSKLLKKL-GINT 951 (965)
Q Consensus 937 ~~~~~~~~~~~-g~~~ 951 (965)
.++...+|+.. |+.+
T Consensus 258 ~E~lv~~L~~~~g~~t 273 (337)
T 3ble_A 258 LEALVTTIHDKSNSKT 273 (337)
T ss_dssp HHHHHHHHHHHSSCCC
T ss_pred HHHHHHHHHHhcCCCC
Confidence 88999999888 8765
|
| >1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5 | Back alignment and structure |
|---|
Probab=97.57 E-value=0.0022 Score=69.75 Aligned_cols=216 Identities=9% Similarity=0.046 Sum_probs=145.5
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEe-----eccCCCCcccHHHHHHHHHHHHh--cCcEeEE--ecCCCCHHHHHHHHHhC
Q psy8199 715 LSIESVITAAQKAKSDGATRFCMG-----AAWRELKDRDLDNIENMICEVKK--IGLETCL--TLGMLNENQAYRLKKVG 785 (965)
Q Consensus 715 ~~~eei~~~~~~~~~~g~~~i~l~-----~g~~~~~~~~~~~~~~~~~~i~~--~~~~i~~--~~~~~~~e~l~~Lk~aG 785 (965)
++.++.++.++.+.+.|++.+-+. .+..+........-.+.++.+++ .+..+.. ..+.-.++.+++..++|
T Consensus 27 ~~~e~k~~i~~~L~~~Gvd~IEvG~~~g~p~ssp~~g~~~~~~~e~l~~i~~~~~~~~i~~l~~p~~~~~~~i~~a~~aG 106 (345)
T 1nvm_A 27 YTLDDVRAIARALDKAKVDSIEVAHGDGLQGSSFNYGFGRHTDLEYIEAVAGEISHAQIATLLLPGIGSVHDLKNAYQAG 106 (345)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEECSCTTSTTCCBTTTBCCSSCHHHHHHHHHTTCSSSEEEEEECBTTBCHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCcccCCCCCHHHHHHHHHhhCCCCEEEEEecCCcccHHHHHHHHhCC
Confidence 889999999999999999999995 11111000001122334555544 2444432 33455789999999999
Q ss_pred CCeEeccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccccc
Q psy8199 786 LDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQ 865 (965)
Q Consensus 786 ~~~i~i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P 865 (965)
++.+.+..-.++ .+...+.++.+++.|+.+...+.-...-+.+.+.+.++.+.+.+ ++.|.+.
T Consensus 107 vd~v~I~~~~s~-----------~~~~~~~i~~ak~~G~~v~~~~~~a~~~~~e~~~~ia~~~~~~G--a~~i~l~---- 169 (345)
T 1nvm_A 107 ARVVRVATHCTE-----------ADVSKQHIEYARNLGMDTVGFLMMSHMIPAEKLAEQGKLMESYG--ATCIYMA---- 169 (345)
T ss_dssp CCEEEEEEETTC-----------GGGGHHHHHHHHHHTCEEEEEEESTTSSCHHHHHHHHHHHHHHT--CSEEEEE----
T ss_pred cCEEEEEEeccH-----------HHHHHHHHHHHHHCCCEEEEEEEeCCCCCHHHHHHHHHHHHHCC--CCEEEEC----
Confidence 999988642232 14567888899999998877765555678899999999999998 7766654
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHHCC-CCceeccccccccc--hhhHHHHhhcCccEE---eeCCccccCCCCCChh
Q psy8199 866 IKGTPLYGSSILDPLEFIRTIAVARITMP-TSRIRMSAGRKEMG--ETTQAFCFLAGANSI---FYGDKLLTTDNTKTND 939 (965)
Q Consensus 866 ~~gT~l~~~~~~~~~~~~~~ia~~R~~lp-~~~i~i~~~~~~~~--~~~~~~~l~~Gan~~---~~g~~~~t~~~~~~~~ 939 (965)
+| ....+|.++.+++...|..+| +..+.+-++ ++.| ......|+.+||+.+ +.|-.- .+++.+.++
T Consensus 170 --DT----~G~~~P~~v~~lv~~l~~~~~~~~pi~~H~H-n~~G~avAn~laA~~aGa~~vd~tv~GlG~-~aGN~~le~ 241 (345)
T 1nvm_A 170 --DS----GGAMSMNDIRDRMRAFKAVLKPETQVGMHAH-HNLSLGVANSIVAVEEGCDRVDASLAGMGA-GAGNAPLEV 241 (345)
T ss_dssp --CT----TCCCCHHHHHHHHHHHHHHSCTTSEEEEECB-CTTSCHHHHHHHHHHTTCCEEEEBGGGCSS-TTCBCBHHH
T ss_pred --CC----cCccCHHHHHHHHHHHHHhcCCCceEEEEEC-CCccHHHHHHHHHHHcCCCEEEecchhccC-CccCcCHHH
Confidence 55 133468999999999999996 554544432 2222 233456889999843 222211 455567889
Q ss_pred hHHHHHHcCCCcchhh
Q psy8199 940 DSKLLKKLGINTRNIK 955 (965)
Q Consensus 940 ~~~~~~~~g~~~~~~~ 955 (965)
...+|+..|+.+.-..
T Consensus 242 lv~~L~~~g~~~~idl 257 (345)
T 1nvm_A 242 FIAVAERLGWNHGTDL 257 (345)
T ss_dssp HHHHHHHHTCBCCSCH
T ss_pred HHHHHHhcCCCCCCCH
Confidence 9999999998864333
|
| >3rmj_A 2-isopropylmalate synthase; LEUA, truncation, neisseria MENI TIM barrel, catalytic domain, dimer, leucine biosynthesis, ketoisovalerate; 1.95A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.0054 Score=66.77 Aligned_cols=218 Identities=15% Similarity=0.116 Sum_probs=143.0
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHhcCcEeEEecCCCCHHHHHHHHH----hCCCeE
Q psy8199 714 ILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKK----VGLDYY 789 (965)
Q Consensus 714 ~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~e~l~~Lk~----aG~~~i 789 (965)
.++.++-++.++.+.+.|++.+-..... ....+.+.+..+.+.+ .+..++.-. ..+.+.++.-.+ +|++.+
T Consensus 30 ~~~~~~Kl~ia~~L~~~Gv~~IE~g~p~--~~~~d~e~v~~i~~~~--~~~~i~~l~-r~~~~di~~a~~al~~ag~~~v 104 (370)
T 3rmj_A 30 AMTKEEKIRVARQLEKLGVDIIEAGFAA--ASPGDFEAVNAIAKTI--TKSTVCSLS-RAIERDIRQAGEAVAPAPKKRI 104 (370)
T ss_dssp CCCHHHHHHHHHHHHHHTCSEEEEEEGG--GCHHHHHHHHHHHTTC--SSSEEEEEE-ESSHHHHHHHHHHHTTSSSEEE
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEEeCCC--CCHHHHHHHHHHHHhC--CCCeEEEEe-cCCHHHHHHHHHHHhhCCCCEE
Confidence 3899999999999999999998875432 1123344444333222 234443211 124555555444 899999
Q ss_pred eccCCCCHHHH-hcccCC--CCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeecccccc
Q psy8199 790 NHNLDTSPKLY-GDIIST--RDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQI 866 (965)
Q Consensus 790 ~i~~es~~~~~-~~i~~~--~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~ 866 (965)
.+..-+++-.. +++++. ...+...++++.+++.|..+..+...+.-.+.+.+.+.++.+.+.+ .+.|.+.
T Consensus 105 ~if~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~~~~ed~~r~~~~~~~~~~~~~~~~G--a~~i~l~----- 177 (370)
T 3rmj_A 105 HTFIATSPIHMEYKLKMKPKQVIEAAVKAVKIAREYTDDVEFSCEDALRSEIDFLAEICGAVIEAG--ATTINIP----- 177 (370)
T ss_dssp EEEEECSHHHHHHTTCCCHHHHHHHHHHHHHHHTTTCSCEEEEEETGGGSCHHHHHHHHHHHHHHT--CCEEEEE-----
T ss_pred EEEecCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEecCCCCccCHHHHHHHHHHHHHcC--CCEEEec-----
Confidence 98877765433 344432 2345566678889999998766666555588899999999999999 7776544
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCC---Cceeccccccccch--hhHHHHhhcCccEEe-----eCCccccCCCCC
Q psy8199 867 KGTPLYGSSILDPLEFIRTIAVARITMPT---SRIRMSAGRKEMGE--TTQAFCFLAGANSIF-----YGDKLLTTDNTK 936 (965)
Q Consensus 867 ~gT~l~~~~~~~~~~~~~~ia~~R~~lp~---~~i~i~~~~~~~~~--~~~~~~l~~Gan~~~-----~g~~~~t~~~~~ 936 (965)
.| ....+|.++.+++...|..+|+ ..+.+-+. ++.+. .....|+.+||+.+= .|+ .+++.+
T Consensus 178 -DT----~G~~~P~~~~~lv~~l~~~~~~~~~~~l~~H~H-nd~GlAvAN~laAv~aGa~~vd~tv~GlGe---raGN~~ 248 (370)
T 3rmj_A 178 -DT----VGYSIPYKTEEFFRELIAKTPNGGKVVWSAHCH-NDLGLAVANSLAALKGGARQVECTVNGLGE---RAGNAS 248 (370)
T ss_dssp -CS----SSCCCHHHHHHHHHHHHHHSTTGGGSEEEEECB-CTTSCHHHHHHHHHHTTCCEEEEBGGGCSS---TTCBCB
T ss_pred -Cc----cCCcCHHHHHHHHHHHHHhCCCcCceEEEEEeC-CCCChHHHHHHHHHHhCCCEEEEeccccCc---cccccc
Confidence 55 2456889999999999999986 44444432 23222 334568899999532 233 455566
Q ss_pred ChhhHHHHHH----cCCCcc
Q psy8199 937 TNDDSKLLKK----LGINTR 952 (965)
Q Consensus 937 ~~~~~~~~~~----~g~~~~ 952 (965)
.++...+|+. +|+.+.
T Consensus 249 lE~vv~~L~~~~~~~g~~tg 268 (370)
T 3rmj_A 249 VEEIVMALKVRHDLFGLETG 268 (370)
T ss_dssp HHHHHHHHHHTHHHHCCBCC
T ss_pred HHHHHHHHHhhhhccCCCCC
Confidence 7888888863 587753
|
| >3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.0075 Score=63.59 Aligned_cols=228 Identities=13% Similarity=0.039 Sum_probs=143.9
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHhcCcEeEEecCCCCHHHHHHH----HHhCCCeE
Q psy8199 714 ILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRL----KKVGLDYY 789 (965)
Q Consensus 714 ~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~e~l~~L----k~aG~~~i 789 (965)
.++.++.++.++.+.+.|++.|-+.+... ...+.+.+..+.+.. .+..+..-.- -.++.++.. +++|++.+
T Consensus 23 ~~~~~~K~~i~~~L~~~Gv~~IE~g~p~~--~~~d~e~v~~i~~~~--~~~~i~~l~~-~~~~di~~a~~~~~~ag~~~v 97 (293)
T 3ewb_X 23 NFDVKEKIQIALQLEKLGIDVIEAGFPIS--SPGDFECVKAIAKAI--KHCSVTGLAR-CVEGDIDRAEEALKDAVSPQI 97 (293)
T ss_dssp CCCHHHHHHHHHHHHHHTCSEEEEECGGG--CHHHHHHHHHHHHHC--CSSEEEEEEE-SSHHHHHHHHHHHTTCSSEEE
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCCC--CccHHHHHHHHHHhc--CCCEEEEEec-CCHHHHHHHHHHHhhcCCCEE
Confidence 38899999999999999999998854321 112334433333222 3444432111 123444444 44799999
Q ss_pred eccCCCCHHHH-hcccCC--CCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeecccccc
Q psy8199 790 NHNLDTSPKLY-GDIIST--RDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQI 866 (965)
Q Consensus 790 ~i~~es~~~~~-~~i~~~--~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~ 866 (965)
.+.+-+|+-.. .++++. ...+...+.++.+++.|+.+..+...+...+.+.+.+.++.+.+.+ ++.|.+.
T Consensus 98 ~i~~~~Sd~~~~~nl~~s~~e~l~~~~~~v~~a~~~g~~v~~~~~d~~~~~~~~~~~~~~~~~~~G--~~~i~l~----- 170 (293)
T 3ewb_X 98 HIFLATSDVHMEYKLKMSRAEVLASIKHHISYARQKFDVVQFSPEDATRSDRAFLIEAVQTAIDAG--ATVINIP----- 170 (293)
T ss_dssp EEEEECSHHHHHHTTCCCHHHHHHHHHHHHHHHHTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTT--CCEEEEE-----
T ss_pred EEEecCcHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccCCCCCHHHHHHHHHHHHHcC--CCEEEec-----
Confidence 98876665432 333332 2455667778889999998876665544478888999999999999 7777654
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCC---ceeccccccccc--hhhHHHHhhcCccEEe-----eCCccccCCCCC
Q psy8199 867 KGTPLYGSSILDPLEFIRTIAVARITMPTS---RIRMSAGRKEMG--ETTQAFCFLAGANSIF-----YGDKLLTTDNTK 936 (965)
Q Consensus 867 ~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~---~i~i~~~~~~~~--~~~~~~~l~~Gan~~~-----~g~~~~t~~~~~ 936 (965)
.| ....+|.++.+++...|..+|+. .+.+-+. ++.+ ......|+.+||+.+= .|+ .+++..
T Consensus 171 -DT----~G~~~P~~v~~lv~~l~~~~~~~~~~~l~~H~H-nd~Gla~AN~laA~~aGa~~vd~sv~GlGe---raGN~~ 241 (293)
T 3ewb_X 171 -DT----VGYTNPTEFGQLFQDLRREIKQFDDIIFASHCH-DDLGMATANALAAIENGARRVEGTINGIGE---RAGNTA 241 (293)
T ss_dssp -CS----SSCCCHHHHHHHHHHHHHHCTTGGGSEEEEECB-CTTSCHHHHHHHHHHTTCCEEEEBGGGCCT---TTCBCB
T ss_pred -CC----CCCCCHHHHHHHHHHHHHhcCCccCceEEEEeC-CCcChHHHHHHHHHHhCCCEEEeecccccc---ccccHh
Confidence 55 24468899999999999999853 2333322 2222 2334568899999532 223 445556
Q ss_pred ChhhHHHHHH----cCCCc---chhhhHHhhhh
Q psy8199 937 TNDDSKLLKK----LGINT---RNIKIKMKNNI 962 (965)
Q Consensus 937 ~~~~~~~~~~----~g~~~---~~~~~~~~~~~ 962 (965)
.++...+|+. +|+.+ .....+++..+
T Consensus 242 ~E~vv~~L~~~~~~~g~~tgidl~~L~~~s~~v 274 (293)
T 3ewb_X 242 LEEVAVALHIRKDFYQAETNIVLNQFKNSSDLI 274 (293)
T ss_dssp HHHHHHHHHHTHHHHCEEECCCGGGHHHHHHHH
T ss_pred HHHHHHHHHhhhhhcCCCCCCCHHHHHHHHHHH
Confidence 7888888875 68764 33344444433
|
| >3eeg_A 2-isopropylmalate synthase; 11106D, beta barrel, PSI-II, structural genomics, protein structure initiative; 2.78A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.0027 Score=68.02 Aligned_cols=217 Identities=14% Similarity=0.120 Sum_probs=142.6
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHhcCcEeEEecCCCCHHHHHHHHHh----CCCeE
Q psy8199 714 ILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKV----GLDYY 789 (965)
Q Consensus 714 ~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~e~l~~Lk~a----G~~~i 789 (965)
.++.++.++.++.+.+.|++.|-+... .....+.+.+.++.+.+ .+..+..- ...+++.+++-.++ |++.+
T Consensus 24 ~~~~~~Kl~ia~~L~~~Gv~~IE~g~p--~~~~~d~e~v~~i~~~~--~~~~i~~l-~r~~~~~i~~a~~al~~ag~~~v 98 (325)
T 3eeg_A 24 QLNTEEKIIVAKALDELGVDVIEAGFP--VSSPGDFNSVVEITKAV--TRPTICAL-TRAKEADINIAGEALRFAKRSRI 98 (325)
T ss_dssp -CCTTHHHHHHHHHHHHTCSEEEEECT--TSCHHHHHHHHHHHHHC--CSSEEEEE-CCSCHHHHHHHHHHHTTCSSEEE
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCC--CCCHhHHHHHHHHHHhC--CCCEEEEe-ecCCHHHHHHHHHhhcccCCCEE
Confidence 378999999999999999999888532 11222333333332222 34444332 22346666665666 99999
Q ss_pred eccCCCCHHHH-hcccC--CCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeecccccc
Q psy8199 790 NHNLDTSPKLY-GDIIS--TRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQI 866 (965)
Q Consensus 790 ~i~~es~~~~~-~~i~~--~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~ 866 (965)
.+..-+++-.. +++++ ..+.+...++++.+++.|+.+..+...+...+.+.+.+.++.+.+.+ ++.|.+.
T Consensus 99 ~i~~s~Sd~~~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~f~~~d~~~~~~~~~~~~~~~~~~~G--~~~i~l~----- 171 (325)
T 3eeg_A 99 HTGIGSSDIHIEHKLRSTRENILEMAVAAVKQAKKVVHEVEFFCEDAGRADQAFLARMVEAVIEAG--ADVVNIP----- 171 (325)
T ss_dssp EEEEECSHHHHC----CCCTTGGGTTHHHHHHHHTTSSEEEEEEETGGGSCHHHHHHHHHHHHHHT--CSEEECC-----
T ss_pred EEEecccHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEccccccchHHHHHHHHHHHHhcC--CCEEEec-----
Confidence 98866665433 33433 34677888999999999998876666555578888999999999999 7766543
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCC---Cceeccccccccch--hhHHHHhhcCccEEe-----eCCccccCCCCC
Q psy8199 867 KGTPLYGSSILDPLEFIRTIAVARITMPT---SRIRMSAGRKEMGE--TTQAFCFLAGANSIF-----YGDKLLTTDNTK 936 (965)
Q Consensus 867 ~gT~l~~~~~~~~~~~~~~ia~~R~~lp~---~~i~i~~~~~~~~~--~~~~~~l~~Gan~~~-----~g~~~~t~~~~~ 936 (965)
.| ....+|.++.+++...|..+|+ ..+.+-+. ++.+. .....|+.+||+.+= .|+ .+++.+
T Consensus 172 -DT----~G~~~P~~v~~lv~~l~~~~~~~~~~~i~~H~H-nd~GlA~AN~laA~~aGa~~vd~tv~GlGe---r~GN~~ 242 (325)
T 3eeg_A 172 -DT----TGYMLPWQYGERIKYLMDNVSNIDKAILSAHCH-NDLGLATANSLAALQNGARQVECTINGIGE---RAGNTA 242 (325)
T ss_dssp -BS----SSCCCHHHHHHHHHHHHHHCSCGGGSEEEECBC-CTTSCHHHHHHHHHHHTCCEEEEBGGGCCS---TTCCCB
T ss_pred -Cc----cCCcCHHHHHHHHHHHHHhCCCCCceEEEEEeC-CCCCHHHHHHHHHHHhCCCEEEEecccccc---cccchh
Confidence 55 2446889999999999999986 44444432 23222 334568899999542 223 445556
Q ss_pred ChhhHHHHHH----cCCCc
Q psy8199 937 TNDDSKLLKK----LGINT 951 (965)
Q Consensus 937 ~~~~~~~~~~----~g~~~ 951 (965)
.++.+.+|+. +|+.+
T Consensus 243 lE~vv~~L~~~~~~~g~~t 261 (325)
T 3eeg_A 243 LEEVVMAMECHKETLGLET 261 (325)
T ss_dssp HHHHHHHHHHTHHHHCEEC
T ss_pred HHHHHHHHHhhhhccCCCC
Confidence 7888888884 67764
|
| >1rqb_A Transcarboxylase 5S subunit; TIM-barrel, carbamylated lysine, transfera; HET: KCX; 1.90A {Propionibacterium freudenreichii subspshermanii} SCOP: a.5.7.2 c.1.10.5 PDB: 1rqe_A 1rqh_A* 1rr2_A* 1u5j_A* 1s3h_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0042 Score=70.54 Aligned_cols=212 Identities=15% Similarity=0.172 Sum_probs=142.8
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEeeccC------CCCcccHHHHHHHHHHHHhcCcEeEEe----cCC------CCHHHH
Q psy8199 715 LSIESVITAAQKAKSDGATRFCMGAAWR------ELKDRDLDNIENMICEVKKIGLETCLT----LGM------LNENQA 778 (965)
Q Consensus 715 ~~~eei~~~~~~~~~~g~~~i~l~~g~~------~~~~~~~~~~~~~~~~i~~~~~~i~~~----~~~------~~~e~l 778 (965)
++.++.++.++.+.+.|++.+-..++.. -....+.+.+..+.+.++...+...+. .|. +.+..+
T Consensus 44 ~~tedKl~Ia~~L~~~Gv~~IE~G~patF~~~~rfl~~d~~e~lr~l~~~~~~~~l~~L~R~~N~~G~~~ypddv~~~~v 123 (539)
T 1rqb_A 44 MAMEDMVGACADIDAAGYWSVECWGGATYDSCIRFLNEDPWERLRTFRKLMPNSRLQMLLRGQNLLGYRHYNDEVVDRFV 123 (539)
T ss_dssp CCGGGTGGGHHHHHHTTCSEEEEEETTHHHHHHHTSCCCHHHHHHHHHHHCTTSCEEEEECGGGTTSSSCCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCcccccccchhccCCCHHHHHHHHHHhCCCCEEEEEeccccccCcccCcccccHHHH
Confidence 7899999999999999999999977532 011223333333332222233333332 122 246778
Q ss_pred HHHHHhCCCeEeccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeE--EEecCCCHHHHHHHHHHHHhcCCCCC
Q psy8199 779 YRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGG--IIGLSESRDQRAELIFQLANLNPYPE 856 (965)
Q Consensus 779 ~~Lk~aG~~~i~i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~--i~Gl~et~ed~~~~l~~l~~l~~~~~ 856 (965)
+...++|++.+.+..-+++- +...++++.+++.|..+...+ ..|...+.+.+.+.++.+.+.+ ++
T Consensus 124 e~a~~aGvd~vrIf~s~sd~-----------~ni~~~i~~ak~~G~~v~~~i~~~~~~~~~~e~~~~~a~~l~~~G--ad 190 (539)
T 1rqb_A 124 DKSAENGMDVFRVFDAMNDP-----------RNMAHAMAAVKKAGKHAQGTICYTISPVHTVEGYVKLAGQLLDMG--AD 190 (539)
T ss_dssp HHHHHTTCCEEEECCTTCCT-----------HHHHHHHHHHHHTTCEEEEEEECCCSTTCCHHHHHHHHHHHHHTT--CS
T ss_pred HHHHhCCCCEEEEEEehhHH-----------HHHHHHHHHHHHCCCeEEEEEEeeeCCCCCHHHHHHHHHHHHHcC--CC
Confidence 99999999999887544432 456889999999999886555 4455688999999999999999 77
Q ss_pred ceeeccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCC-CCceeccccccccch--hhHHHHhhcCccEEe---eCCccc
Q psy8199 857 SVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMP-TSRIRMSAGRKEMGE--TTQAFCFLAGANSIF---YGDKLL 930 (965)
Q Consensus 857 ~i~~~~~~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp-~~~i~i~~~~~~~~~--~~~~~~l~~Gan~~~---~g~~~~ 930 (965)
.|.+. .| .....|.++.+++...|..+| +..+.+-+.= +.|. .....|+.+||+.+= .|-. -
T Consensus 191 ~I~L~------DT----~G~~~P~~v~~lv~~l~~~~p~~i~I~~H~Hn-d~GlAvAN~laAveAGa~~VD~ti~g~G-e 258 (539)
T 1rqb_A 191 SIALK------DM----AALLKPQPAYDIIKAIKDTYGQKTQINLHCHS-TTGVTEVSLMKAIEAGVDVVDTAISSMS-L 258 (539)
T ss_dssp EEEEE------ET----TCCCCHHHHHHHHHHHHHHHCTTCCEEEEEBC-TTSCHHHHHHHHHHTTCSEEEEBCGGGC-S
T ss_pred EEEeC------CC----CCCcCHHHHHHHHHHHHHhcCCCceEEEEeCC-CCChHHHHHHHHHHhCCCEEEEeccccC-C
Confidence 76554 44 234678999999999998887 5555554432 2222 334568899999532 2211 1
Q ss_pred cCCCCCChhhHHHHHHcCCCc
Q psy8199 931 TTDNTKTNDDSKLLKKLGINT 951 (965)
Q Consensus 931 t~~~~~~~~~~~~~~~~g~~~ 951 (965)
.+++.+.++.+.+|+..|+.+
T Consensus 259 rtGN~~lE~lv~~L~~~g~~t 279 (539)
T 1rqb_A 259 GPGHNPTESVAEMLEGTGYTT 279 (539)
T ss_dssp TTSBCBHHHHHHHTTTSSEEC
T ss_pred CccChhHHHHHHHHHhcCCCc
Confidence 455557788888998888765
|
| >2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.014 Score=65.40 Aligned_cols=213 Identities=16% Similarity=0.145 Sum_probs=141.1
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEeeccC------CCCcccHHHHHHHHHHHHhcCcEeEEe----cCCC------CHHHH
Q psy8199 715 LSIESVITAAQKAKSDGATRFCMGAAWR------ELKDRDLDNIENMICEVKKIGLETCLT----LGML------NENQA 778 (965)
Q Consensus 715 ~~~eei~~~~~~~~~~g~~~i~l~~g~~------~~~~~~~~~~~~~~~~i~~~~~~i~~~----~~~~------~~e~l 778 (965)
++.++.++.++.+.+.|+..+-..++.. -....+.+.+..+.+.++...+...++ .|.. .+..+
T Consensus 27 ~~~~dkl~Ia~~L~~~Gv~~IE~g~~atF~~~~r~~~~d~~e~l~~i~~~~~~~~l~~l~R~~N~~G~~~~~ddv~~~~v 106 (464)
T 2nx9_A 27 LRIDDMLPIAQQLDQIGYWSLECWGGATFDSCIRFLGEDPWQRLRLLKQAMPNTPLQMLLRGQNLLGYRHYADDVVDTFV 106 (464)
T ss_dssp CCGGGTGGGHHHHHTSCCSEEEEEETTHHHHHHHTTCCCHHHHHHHHHHHCSSSCEEEEECGGGTTSSSCCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCcCccccchhhccCCCHHHHHHHHHHhCCCCeEEEEeccccccCcccccchhhHHHH
Confidence 7789999999999999999999976531 011223333333322222223333332 1322 25678
Q ss_pred HHHHHhCCCeEeccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeE--EEecCCCHHHHHHHHHHHHhcCCCCC
Q psy8199 779 YRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGG--IIGLSESRDQRAELIFQLANLNPYPE 856 (965)
Q Consensus 779 ~~Lk~aG~~~i~i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~--i~Gl~et~ed~~~~l~~l~~l~~~~~ 856 (965)
+...++|++.+.+..-+++- +...++++.+++.|..+...+ ..|...+.+.+.+.++.+.+.+ ++
T Consensus 107 ~~a~~~Gvd~i~if~~~sd~-----------~ni~~~i~~ak~~G~~v~~~i~~~~~~~~~~e~~~~~a~~l~~~G--ad 173 (464)
T 2nx9_A 107 ERAVKNGMDVFRVFDAMNDV-----------RNMQQALQAVKKMGAHAQGTLCYTTSPVHNLQTWVDVAQQLAELG--VD 173 (464)
T ss_dssp HHHHHTTCCEEEECCTTCCT-----------HHHHHHHHHHHHTTCEEEEEEECCCCTTCCHHHHHHHHHHHHHTT--CS
T ss_pred HHHHhCCcCEEEEEEecCHH-----------HHHHHHHHHHHHCCCEEEEEEEeeeCCCCCHHHHHHHHHHHHHCC--CC
Confidence 89999999999887544332 456789999999999886555 4455688999999999999999 78
Q ss_pred ceeeccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccch--hhHHHHhhcCccEEee--CCccccC
Q psy8199 857 SVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGE--TTQAFCFLAGANSIFY--GDKLLTT 932 (965)
Q Consensus 857 ~i~~~~~~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~--~~~~~~l~~Gan~~~~--g~~~~t~ 932 (965)
.|.+. .| .....|.++.+++...|..+ +..+.+-+.= +.|. .....|+.+||+.+=. +..--.+
T Consensus 174 ~I~l~------DT----~G~~~P~~v~~lv~~l~~~~-~~~i~~H~Hn-d~GlAvAN~laAv~AGa~~VD~ti~g~gert 241 (464)
T 2nx9_A 174 SIALK------DM----AGILTPYAAEELVSTLKKQV-DVELHLHCHS-TAGLADMTLLKAIEAGVDRVDTAISSMSGTY 241 (464)
T ss_dssp EEEEE------ET----TSCCCHHHHHHHHHHHHHHC-CSCEEEEECC-TTSCHHHHHHHHHHTTCSEEEEBCGGGCSTT
T ss_pred EEEEc------CC----CCCcCHHHHHHHHHHHHHhc-CCeEEEEECC-CCChHHHHHHHHHHhCCCEEEEeccccCCCC
Confidence 77654 34 23467899999999998877 3445444432 2222 3345688999995421 1111145
Q ss_pred CCCCChhhHHHHHHcCCCcc
Q psy8199 933 DNTKTNDDSKLLKKLGINTR 952 (965)
Q Consensus 933 ~~~~~~~~~~~~~~~g~~~~ 952 (965)
++.+.++.+.+|+..|+.+.
T Consensus 242 GN~~lE~lv~~L~~~g~~tg 261 (464)
T 2nx9_A 242 GHPATESLVATLQGTGYDTG 261 (464)
T ss_dssp SCCBHHHHHHHHTTSTTCCC
T ss_pred cCHHHHHHHHHHHhcCCCcc
Confidence 55678889999999888764
|
| >3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A | Back alignment and structure |
|---|
Probab=96.99 E-value=0.029 Score=66.11 Aligned_cols=214 Identities=12% Similarity=0.044 Sum_probs=146.2
Q ss_pred CCHHHHHHHHHHHHHC--CCCEEEEeeccC------CCCcccHHHHHHHHHHHHhcCcEeEEec----CC------CCHH
Q psy8199 715 LSIESVITAAQKAKSD--GATRFCMGAAWR------ELKDRDLDNIENMICEVKKIGLETCLTL----GM------LNEN 776 (965)
Q Consensus 715 ~~~eei~~~~~~~~~~--g~~~i~l~~g~~------~~~~~~~~~~~~~~~~i~~~~~~i~~~~----~~------~~~e 776 (965)
++.++.++.++.+.+. |+..+-..||.. -....+++++.++.+.+++..+...++. |. ...+
T Consensus 122 ~~~edkl~Ia~~Ld~~Gvg~~~IE~gGGatfd~~~~f~~e~p~e~l~~l~~~~~~~~l~~l~R~~n~vgy~~~p~~~~~~ 201 (718)
T 3bg3_A 122 VRTHDLKKIAPYVAHNFSKLFSMENWGGATFDVAMRFLYECPWRRLQELRELIPNIPFQMLLRGANAVGYTNYPDNVVFK 201 (718)
T ss_dssp CCHHHHHHHHHHHHHHCTTCSEEEEEETTHHHHHHHTSCCCHHHHHHHHHHHCSSSCEEEEECGGGTTSSSCCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEecCCcchhhccccCCCCHHHHHHHHHHHcccchHHHHhcccccccccccCCcchHH
Confidence 7899999999999887 577787764432 1223445666665555544333333322 11 1367
Q ss_pred HHHHHHHhCCCeEeccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEe---c-C----CCHHHHHHHHHHH
Q psy8199 777 QAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIG---L-S----ESRDQRAELIFQL 848 (965)
Q Consensus 777 ~l~~Lk~aG~~~i~i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~G---l-~----et~ed~~~~l~~l 848 (965)
.++...++|++.+.+..-.+ ..+....+++.+++.|..+...+.+. . + .+.+.+.+.++.+
T Consensus 202 ~i~~a~~~Gvd~irIf~s~n-----------~l~~l~~~i~~ak~~G~~v~~~i~~~~d~~dp~r~~~~~e~~~~~a~~l 270 (718)
T 3bg3_A 202 FCEVAKENGMDVFRVFDSLN-----------YLPNMLLGMEAAGSAGGVVEAAISYTGDVADPSRTKYSLQYYMGLAEEL 270 (718)
T ss_dssp HHHHHHHHTCCEEEEECSSC-----------CHHHHHHHHHHHHTTTSEEEEEEECCSCTTCTTCCTTCHHHHHHHHHHH
T ss_pred HHHHHHhcCcCEEEEEecHH-----------HHHHHHHHHHHHHHcCCeEEEEEEeeccccCCCCCCCCHHHHHHHHHHH
Confidence 88999999999988774222 25677888999999998877766666 1 1 2789999999999
Q ss_pred HhcCCCCCceeeccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceecccccc-ccchhhHHHHhhcCccEEe---
Q psy8199 849 ANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRK-EMGETTQAFCFLAGANSIF--- 924 (965)
Q Consensus 849 ~~l~~~~~~i~~~~~~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~-~~~~~~~~~~l~~Gan~~~--- 924 (965)
.+.+ ++.|.+. .| ..-..|.++.+++...|..+|+..+.+-++=. .+.......|+.+||+.+=
T Consensus 271 ~~~G--a~~I~l~------DT----~G~~~P~~v~~lV~~lk~~~p~~~I~~H~Hnd~GlAvANslaAveAGa~~VD~ti 338 (718)
T 3bg3_A 271 VRAG--THILCIK------DM----AGLLKPTACTMLVSSLRDRFPDLPLHIHTHDTSGAGVAAMLACAQAGADVVDVAA 338 (718)
T ss_dssp HHHT--CSEEEEE------CT----TSCCCHHHHHHHHHHHHHHSTTCCEEEECCCTTSCHHHHHHHHHHTTCSEEEEBC
T ss_pred HHcC--CCEEEEc------Cc----CCCcCHHHHHHHHHHHHHhCCCCeEEEEECCCccHHHHHHHHHHHhCCCEEEecC
Confidence 9999 7776654 44 24568899999999999999876666665432 2223334568899999542
Q ss_pred eCCccccCCCCCChhhHHHHHHcCCCcc
Q psy8199 925 YGDKLLTTDNTKTNDDSKLLKKLGINTR 952 (965)
Q Consensus 925 ~g~~~~t~~~~~~~~~~~~~~~~g~~~~ 952 (965)
.|-. -.+++.+.++.+.+|+..|+.+.
T Consensus 339 ~GlG-ertGN~~lE~vv~~L~~~g~~tg 365 (718)
T 3bg3_A 339 DSMS-GMTSQPSMGALVACTRGTPLDTE 365 (718)
T ss_dssp GGGC-STTSCCBHHHHHHHHTTSTTCCC
T ss_pred cccc-cccCchhHHHHHHHHHhcCCCcc
Confidence 2111 14555678899999999888753
|
| >3ivs_A Homocitrate synthase, mitochondrial; TIM barrel, metalloprotein, transferase, claisen condensatio acid biosynthesis; 2.24A {Schizosaccharomyces pombe} PDB: 3ivt_A* 3ivu_A* 3mi3_A* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.023 Score=62.50 Aligned_cols=207 Identities=14% Similarity=0.088 Sum_probs=134.9
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHhcC--cEeEEecCCCCHHHHHHHHHhCCCeEec
Q psy8199 714 ILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIG--LETCLTLGMLNENQAYRLKKVGLDYYNH 791 (965)
Q Consensus 714 ~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~~--~~i~~~~~~~~~e~l~~Lk~aG~~~i~i 791 (965)
.++.++-++.++.+.+.|++.|-+.. |-. . +.-.+.++.+.+.+ ..+.. ....+.+.++...++|++.+.+
T Consensus 57 ~~s~eeKl~Ia~~L~~~Gv~~IEvG~---P~a--s-p~d~~~~~~i~~~~~~~~v~~-~~r~~~~di~~A~~aG~~~V~i 129 (423)
T 3ivs_A 57 FFDTEKKIQIAKALDNFGVDYIELTS---PVA--S-EQSRQDCEAICKLGLKCKILT-HIRCHMDDARVAVETGVDGVDV 129 (423)
T ss_dssp CCCHHHHHHHHHHHHHHTCSEEEECC---TTS--C-HHHHHHHHHHHTSCCSSEEEE-EEESCHHHHHHHHHTTCSEEEE
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEEee---ccc--C-HHHHHHHHHHHhcCCCCEEEE-eeccChhhHHHHHHcCCCEEEE
Confidence 48999999999999999999999843 211 1 22334555555533 33322 2234678899999999999999
Q ss_pred cCCCCHHHHh-cccCC--CCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccccccCC
Q psy8199 792 NLDTSPKLYG-DIIST--RDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKG 868 (965)
Q Consensus 792 ~~es~~~~~~-~i~~~--~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~g 868 (965)
.+-+|+-..+ .+++. ...+...++++.+++.|+.+..+..-+...+.+.+.+.++.+.+.+ ++.|.+. .
T Consensus 130 ~~s~Sd~~~~~~l~~s~~e~l~~~~~~v~~ak~~G~~V~~~~eda~r~d~~~~~~v~~~~~~~G--a~~i~l~------D 201 (423)
T 3ivs_A 130 VIGTSQYLRKYSHGKDMTYIIDSATEVINFVKSKGIEVRFSSEDSFRSDLVDLLSLYKAVDKIG--VNRVGIA------D 201 (423)
T ss_dssp EEEC-------------CHHHHHHHHHHHHHHTTTCEEEEEEESGGGSCHHHHHHHHHHHHHHC--CSEEEEE------E
T ss_pred EeeccHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCEEEEEEccCcCCCHHHHHHHHHHHHHhC--CCccccC------C
Confidence 8877643322 22222 2356777899999999999887776666678899999999999999 7766543 4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccch--hhHHHHhhcCccEEe-----eCCccccCCCCCChhhH
Q psy8199 869 TPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGE--TTQAFCFLAGANSIF-----YGDKLLTTDNTKTNDDS 941 (965)
Q Consensus 869 T~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~--~~~~~~l~~Gan~~~-----~g~~~~t~~~~~~~~~~ 941 (965)
|- ...+|.++.+++...|...+ ..+.+-+. ++.+. .....|+.+||+.+= .|+ .+++.+.++..
T Consensus 202 Tv----G~~~P~~v~~lv~~l~~~~~-~~i~~H~H-nd~GlAvAN~laAv~aGa~~vd~ti~GlGE---RaGNa~Le~vv 272 (423)
T 3ivs_A 202 TV----GCATPRQVYDLIRTLRGVVS-CDIECHFH-NDTGMAIANAYCALEAGATHIDTSILGIGE---RNGITPLGALL 272 (423)
T ss_dssp TT----SCCCHHHHHHHHHHHHHHCS-SEEEEEEB-CTTSCHHHHHHHHHHTTCCEEEEBGGGCSS---TTCBCBHHHHH
T ss_pred cc----CcCCHHHHHHHHHHHHhhcC-CeEEEEEC-CCCchHHHHHHHHHHhCCCEEEEecccccC---cccchhHHHHH
Confidence 52 44678889999888887664 33444332 23222 334568899999532 233 44455566665
Q ss_pred HHH
Q psy8199 942 KLL 944 (965)
Q Consensus 942 ~~~ 944 (965)
..+
T Consensus 273 ~~L 275 (423)
T 3ivs_A 273 ARM 275 (423)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
|
| >3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.013 Score=59.61 Aligned_cols=200 Identities=11% Similarity=0.036 Sum_probs=109.3
Q ss_pred CCHHHHHHHHHHHHHCCCC--EEEEeeccC-CCCcccHHHHHHHHHHHH-hcCcEeEEecCCCCHHHHHHHHHhCCCeEe
Q psy8199 715 LSIESVITAAQKAKSDGAT--RFCMGAAWR-ELKDRDLDNIENMICEVK-KIGLETCLTLGMLNENQAYRLKKVGLDYYN 790 (965)
Q Consensus 715 ~~~eei~~~~~~~~~~g~~--~i~l~~g~~-~~~~~~~~~~~~~~~~i~-~~~~~i~~~~~~~~~e~l~~Lk~aG~~~i~ 790 (965)
.+...+.++++.+.+.|++ ++-+..|.+ |...... .+++.++... +..+.+.+-.... ...++.+.++|++.+.
T Consensus 37 aD~~~L~~~i~~l~~~G~d~lHvDVmDg~FVpnit~G~-~~v~~lr~~~p~~~ldvHLmv~~p-~~~i~~~~~aGAd~it 114 (246)
T 3inp_A 37 ADLARLGDDVKAVLAAGADNIHFDVMDNHYVPNLTFGP-MVLKALRDYGITAGMDVHLMVKPV-DALIESFAKAGATSIV 114 (246)
T ss_dssp SCGGGHHHHHHHHHHTTCCCEEEEEEBSSSSSCBCCCH-HHHHHHHHHTCCSCEEEEEECSSC-HHHHHHHHHHTCSEEE
T ss_pred CChhhHHHHHHHHHHcCCCEEEEEecCCCcCcchhcCH-HHHHHHHHhCCCCeEEEEEeeCCH-HHHHHHHHHcCCCEEE
Confidence 4566677777777788877 555566654 3223333 3344444443 2333444433332 5578999999999999
Q ss_pred ccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCC
Q psy8199 791 HNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTP 870 (965)
Q Consensus 791 i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~ 870 (965)
+..|+.+ ...++++.++++|+++.. .+- +.|..+.++ .+.+ . ++.|-++. ..||.-
T Consensus 115 vH~Ea~~-------------~~~~~i~~ir~~G~k~Gv--aln-p~Tp~e~l~---~~l~-~--vD~VlvMs--V~PGfg 170 (246)
T 3inp_A 115 FHPEASE-------------HIDRSLQLIKSFGIQAGL--ALN-PATGIDCLK---YVES-N--IDRVLIMS--VNPGFG 170 (246)
T ss_dssp ECGGGCS-------------CHHHHHHHHHTTTSEEEE--EEC-TTCCSGGGT---TTGG-G--CSEEEEEC--SCTTC-
T ss_pred Eccccch-------------hHHHHHHHHHHcCCeEEE--Eec-CCCCHHHHH---HHHh-c--CCEEEEee--ecCCCC
Confidence 9987742 135677788899987744 332 233332221 1122 2 56666553 345653
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeCCccccCCCCCChhhHHHHH
Q psy8199 871 LYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLLK 945 (965)
Q Consensus 871 l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~~~ 945 (965)
=+...+.+.+.+.++-+.....-++..|-+.++-. .+....+..+|||.+++|..+ +... ++.+.++.++
T Consensus 171 GQ~fi~~~l~KI~~lr~~~~~~~~~~~I~VDGGI~---~~ti~~~~~aGAD~~V~GSaI-f~a~-dp~~~i~~l~ 240 (246)
T 3inp_A 171 GQKFIPAMLDKAKEISKWISSTDRDILLEIDGGVN---PYNIAEIAVCGVNAFVAGSAI-FNSD-SYKQTIDKMR 240 (246)
T ss_dssp -CCCCTTHHHHHHHHHHHHHHHTSCCEEEEESSCC---TTTHHHHHTTTCCEEEESHHH-HTSS-CHHHHHHHHH
T ss_pred CcccchHHHHHHHHHHHHHHhcCCCeeEEEECCcC---HHHHHHHHHcCCCEEEEehHH-hCCC-CHHHHHHHHH
Confidence 22233323333333322222222345566665543 333456789999999999754 4432 4555555554
|
| >1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=96.83 E-value=0.017 Score=59.79 Aligned_cols=204 Identities=13% Similarity=0.112 Sum_probs=121.5
Q ss_pred HHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHh-cCcEeEEecCCCCHHHHHHHHHhCCCeEeccCCCC
Q psy8199 718 ESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTS 796 (965)
Q Consensus 718 eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~-~~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~~es~ 796 (965)
++..+.++.+.+.|+..+.+....... .......+.++.+++ .++.+..+.+..+.+.++.+.++|++.+.++-+.
T Consensus 33 ~~~~~~a~~~~~~G~d~i~v~~~~~~~--~~~~~~~~~i~~i~~~~~ipvi~~g~i~~~~~~~~~~~~Gad~V~i~~~~- 109 (253)
T 1h5y_A 33 GDPVEMAVRYEEEGADEIAILDITAAP--EGRATFIDSVKRVAEAVSIPVLVGGGVRSLEDATTLFRAGADKVSVNTAA- 109 (253)
T ss_dssp ECHHHHHHHHHHTTCSCEEEEECCCCT--TTHHHHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHHHTCSEEEESHHH-
T ss_pred ccHHHHHHHHHHcCCCEEEEEeCCccc--cCCcccHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEEChHH-
Confidence 456677777788899999887543221 223445677777775 5788888999999999999999999999988522
Q ss_pred HHHHhcccCCCCHHHHHHHHHHHHHcCC---ceeeeE-------EEec-C---CCHHHHHHHHHHHHhcCCCCCceeecc
Q psy8199 797 PKLYGDIISTRDYENRLNTLKNVRNVGI---NICCGG-------IIGL-S---ESRDQRAELIFQLANLNPYPESVPINN 862 (965)
Q Consensus 797 ~~~~~~i~~~~~~~~~~~~i~~~~~~Gi---~v~~~~-------i~Gl-~---et~ed~~~~l~~l~~l~~~~~~i~~~~ 862 (965)
+.. .+...+ .+++.|. .+.... .+-. + ++..+..+.++.+.+.+ .+.|.++.
T Consensus 110 ---~~~------~~~~~~---~~~~~g~~~i~~~~~~~~~~g~~~v~~~~~~~~~~~~~~e~~~~~~~~G--~d~i~~~~ 175 (253)
T 1h5y_A 110 ---VRN------PQLVAL---LAREFGSQSTVVAIDAKWNGEYYEVYVKGGREATGLDAVKWAKEVEELG--AGEILLTS 175 (253)
T ss_dssp ---HHC------THHHHH---HHHHHCGGGEEEEEEEEECSSSEEEEETTTTEEEEEEHHHHHHHHHHHT--CSEEEEEE
T ss_pred ---hhC------cHHHHH---HHHHcCCCcEEEEEEeecCCCcEEEEEeCCeecCCCCHHHHHHHHHhCC--CCEEEEec
Confidence 111 111222 2233342 122111 1111 1 12234455567778888 88888775
Q ss_pred ccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeCCccccCCCCCChhhHH
Q psy8199 863 LVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSK 942 (965)
Q Consensus 863 ~~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~ 942 (965)
..| .||.. ....+.+ +. .+... +..+-+.++-.. ..+... ++.+||+++++|..++... .+.++..+
T Consensus 176 ~~~-~g~~~----~~~~~~i-~~---l~~~~-~~pvia~GGi~~-~~~~~~-~~~~Ga~~v~vgsal~~~~-~~~~~~~~ 242 (253)
T 1h5y_A 176 IDR-DGTGL----GYDVELI-RR---VADSV-RIPVIASGGAGR-VEHFYE-AAAAGADAVLAASLFHFRV-LSIAQVKR 242 (253)
T ss_dssp TTT-TTTCS----CCCHHHH-HH---HHHHC-SSCEEEESCCCS-HHHHHH-HHHTTCSEEEESHHHHTTS-SCHHHHHH
T ss_pred ccC-CCCcC----cCCHHHH-HH---HHHhc-CCCEEEeCCCCC-HHHHHH-HHHcCCcHHHHHHHHHcCC-CCHHHHHH
Confidence 544 23321 1233322 22 22233 333444443332 134443 4689999999999775443 46889999
Q ss_pred HHHHcCCCc
Q psy8199 943 LLKKLGINT 951 (965)
Q Consensus 943 ~~~~~g~~~ 951 (965)
++++.|+..
T Consensus 243 ~l~~~g~~~ 251 (253)
T 1h5y_A 243 YLKERGVEV 251 (253)
T ss_dssp HHHHTTCBC
T ss_pred HHHHcCCCC
Confidence 999999864
|
| >1k8w_A TRNA pseudouridine synthase B; protein-RNA complex, T stem-loop, lyase/RNA complex; HET: FHU; 1.85A {Escherichia coli} SCOP: b.122.1.1 d.265.1.2 PDB: 1zl3_A* 1r3f_A | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0017 Score=68.12 Aligned_cols=70 Identities=20% Similarity=0.392 Sum_probs=55.7
Q ss_pred CcEEEEECCCCCeeeeCCCCCcccHHHHHHHHCCcccCCCCccccccCCCCCceEEEeEeCHHHHHHHHHHHHcCCcCeE
Q psy8199 36 NEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRK 115 (965)
Q Consensus 36 ~~~lv~nKP~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~RLD~~tsGlll~a~~~~~~~~l~~~~~~~~~~K~ 115 (965)
+.++++|||+|+.++ .+++.+++.+. ..+++..+.||...||+|+++-.... ++...+.. ..|+
T Consensus 25 ~Gil~vdKP~G~TS~--------dvv~~vr~~l~----~kKvGH~GTLDP~AtGvL~i~~G~aT--Kl~~~l~~--~~K~ 88 (327)
T 1k8w_A 25 NGVLLLDKPQGMSSN--------DALQKVKRIYN----ANRAGHTGALDPLATGMLPICLGEAT--KFSQYLLD--SDKR 88 (327)
T ss_dssp CEEEEEEECTTCCHH--------HHHHHHHHHTT----CSCEEESSCCCTTCEEEEEEEEGGGG--GGTHHHHT--SCEE
T ss_pred CeEEEEECCCCCCHH--------HHHHHHHHhhc----cceeccCCCCCCCCeeEEEEEECHHH--hHHHHhcc--CCcE
Confidence 459999999999997 47788887765 34889999999999999999987642 35555554 4899
Q ss_pred EEEEEc
Q psy8199 116 YLAMVW 121 (965)
Q Consensus 116 Y~a~v~ 121 (965)
|.|.+.
T Consensus 89 Y~a~~~ 94 (327)
T 1k8w_A 89 YRVIAR 94 (327)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999775
|
| >2ztj_A Homocitrate synthase; (beta/alpha)8 TIM barrel, substrate complex, amino-acid BIOS lysine biosynthesis, transferase; HET: AKG; 1.80A {Thermus thermophilus} PDB: 2ztk_A* 2zyf_A* 3a9i_A* | Back alignment and structure |
|---|
Probab=96.62 E-value=0.095 Score=57.43 Aligned_cols=207 Identities=13% Similarity=0.103 Sum_probs=131.6
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHhcCc--EeEEecCCCCHHHHHHHHHhCCCeEec
Q psy8199 714 ILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGL--ETCLTLGMLNENQAYRLKKVGLDYYNH 791 (965)
Q Consensus 714 ~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~~~--~i~~~~~~~~~e~l~~Lk~aG~~~i~i 791 (965)
.++.++.++.++.+.+.|++.+-+.+ |-. .+...+.++.+++.++ .+..- .....+.++...++|++.+.+
T Consensus 21 ~~~~~~k~~ia~~L~~~Gv~~IE~g~---p~~---~~~~~~~~~~i~~~~~~~~v~~~-~r~~~~di~~a~~~g~~~v~i 93 (382)
T 2ztj_A 21 NFSTQDKVEIAKALDEFGIEYIEVTT---PVA---SPQSRKDAEVLASLGLKAKVVTH-IQCRLDAAKVAVETGVQGIDL 93 (382)
T ss_dssp CCCHHHHHHHHHHHHHHTCSEEEECC---TTS---CHHHHHHHHHHHTSCCSSEEEEE-EESCHHHHHHHHHTTCSEEEE
T ss_pred CcCHHHHHHHHHHHHHcCcCEEEEcC---CcC---CHHHHHHHHHHHhcCCCcEEEEE-cccChhhHHHHHHcCCCEEEE
Confidence 38899999999999999999999844 211 1334466666766443 33221 112467799999999999998
Q ss_pred cCCCCHHHHhcccCCCC----HHHHHHHHHHHHHcC--CceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccccc
Q psy8199 792 NLDTSPKLYGDIISTRD----YENRLNTLKNVRNVG--INICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQ 865 (965)
Q Consensus 792 ~~es~~~~~~~i~~~~~----~~~~~~~i~~~~~~G--i~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P 865 (965)
.+-+++-..+ .-+.+ .+...++++.+++.| +.+.....-+...+.+.+.+.++.+.+. ++.|.+.
T Consensus 94 ~~~~s~~~~~--~~~~s~~e~l~~~~~~v~~ak~~g~~~~v~~~~ed~~~~~~~~~~~~~~~~~~~---a~~i~l~---- 164 (382)
T 2ztj_A 94 LFGTSKYLRA--PHGRDIPRIIEEAKEVIAYIREAAPHVEVRFSAEDTFRSEEQDLLAVYEAVAPY---VDRVGLA---- 164 (382)
T ss_dssp EECC----------CCCHHHHHHHHHHHHHHHHHHCTTSEEEEEETTTTTSCHHHHHHHHHHHGGG---CSEEEEE----
T ss_pred EeccCHHHHH--HhCCCHHHHHHHHHHHHHHHHHcCCCEEEEEEEEeCCCCCHHHHHHHHHHHHHh---cCEEEec----
Confidence 8766653333 33334 456788889999999 8877665544456777788888777776 2444433
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHHC-CCCceeccccccccc--hhhHHHHhhcCccEEe---e--CCccccCCCCCC
Q psy8199 866 IKGTPLYGSSILDPLEFIRTIAVARITM-PTSRIRMSAGRKEMG--ETTQAFCFLAGANSIF---Y--GDKLLTTDNTKT 937 (965)
Q Consensus 866 ~~gT~l~~~~~~~~~~~~~~ia~~R~~l-p~~~i~i~~~~~~~~--~~~~~~~l~~Gan~~~---~--g~~~~t~~~~~~ 937 (965)
.| .....|.++.+++...|..+ |+..+.+-+. ++.| ......|+.+||+.+- . |+ .+++.+.
T Consensus 165 --DT----~G~~~P~~~~~lv~~l~~~~~~~~~i~~H~H-nd~GlAvAN~laAv~aGa~~vd~tv~GlGe---raGN~~l 234 (382)
T 2ztj_A 165 --DT----VGVATPRQVYALVREVRRVVGPRVDIEFHGH-NDTGCAIANAYEAIEAGATHVDTTILGIGE---RNGITPL 234 (382)
T ss_dssp --ET----TSCCCHHHHHHHHHHHHHHHTTTSEEEEEEB-CTTSCHHHHHHHHHHTTCCEEEEBGGGCSS---TTCBCBH
T ss_pred --CC----CCCCCHHHHHHHHHHHHHhcCCCCeEEEEeC-CCccHHHHHHHHHHHhCCCEEEEccccccc---cccchhH
Confidence 44 23467899999998888865 5554544432 2222 2334568899999543 2 33 4455566
Q ss_pred hhhHHHHHH
Q psy8199 938 NDDSKLLKK 946 (965)
Q Consensus 938 ~~~~~~~~~ 946 (965)
++....|..
T Consensus 235 E~vv~~L~~ 243 (382)
T 2ztj_A 235 GGFLARMYT 243 (382)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777755543
|
| >1r3e_A TRNA pseudouridine synthase B; RNA modification, pseudouridylation, lyase-RNA complex; HET: FHU; 2.10A {Thermotoga maritima} SCOP: b.122.1.1 d.265.1.2 PDB: 1ze2_A* 2ab4_A* 1ze1_A | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0016 Score=67.82 Aligned_cols=70 Identities=16% Similarity=0.291 Sum_probs=55.4
Q ss_pred CcEEEEECCCCCeeeeCCCCCcccHHHHHHHHCCcccCCCCccccccCCCCCceEEEeEeCHHHHHHHHHHHHcCCcCeE
Q psy8199 36 NEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRK 115 (965)
Q Consensus 36 ~~~lv~nKP~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~RLD~~tsGlll~a~~~~~~~~l~~~~~~~~~~K~ 115 (965)
+.++++|||+|+.|| .+++.+++.+. ..+++..+.||...||+|+++-... .++...+.. ..|+
T Consensus 3 ~Gil~vdKP~G~TS~--------~vv~~vrr~l~----~kKvGH~GTLDP~AtGvL~i~iG~a--TKl~~~l~~--~~K~ 66 (309)
T 1r3e_A 3 HGILVAYKPKGPTSH--------DVVDEVRKKLK----TRKVGHGGTLDPFACGVLIIGVNQG--TRILEFYKD--LKKV 66 (309)
T ss_dssp CEEEEEEECSSSCHH--------HHHHHHHHHTT----CSCEEESSCCCTTCEEEEEEEEGGG--GGGGGGGTT--SCEE
T ss_pred CeEEEEECCCCCCHH--------HHHHHHHHHhc----cceecccccCCCCcceeEEEEECHH--HhHHHHhCc--cCcE
Confidence 458999999999997 47888887774 3488999999999999999999863 344443333 5899
Q ss_pred EEEEEc
Q psy8199 116 YLAMVW 121 (965)
Q Consensus 116 Y~a~v~ 121 (965)
|.|.+.
T Consensus 67 Y~a~~~ 72 (309)
T 1r3e_A 67 YWVKMR 72 (309)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999775
|
| >1sgv_A TRNA pseudouridine synthase B; hinged motion, tRNA modification, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} SCOP: b.122.1.1 d.265.1.2 | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0018 Score=67.45 Aligned_cols=71 Identities=21% Similarity=0.426 Sum_probs=56.3
Q ss_pred cCcEEEEECCCCCeeeeCCCCCcccHHHHHHHHCCcccCCCCccccccCCCCCceEEEeEeCHHHHHHHHHHHHcCCcCe
Q psy8199 35 DNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQR 114 (965)
Q Consensus 35 ~~~~lv~nKP~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~RLD~~tsGlll~a~~~~~~~~l~~~~~~~~~~K 114 (965)
.+.++++|||.|+.|| .+++.+++.+. ..+++..+.||...||+|+++-... .++...+. ...|
T Consensus 5 ~~Gil~vdKP~G~TS~--------dvv~~vrr~l~----~kKvGH~GTLDP~AtGvL~i~iG~a--TKl~~~l~--~~~K 68 (316)
T 1sgv_A 5 GPGIVVIDKPAGMTSH--------DVVGRCRRIFA----TRRVGHAGTLDPMATGVLVIGIERA--TKILGLLT--AAPK 68 (316)
T ss_dssp CSEEEEEEECTTCCHH--------HHHHHHHHHTT----CSCEEESSCCCTTCEEEEEEEEGGG--GGGGGGTT--TSCE
T ss_pred CCeEEEEECCCCCCHH--------HHHHHHHHHhc----cccccccccCCCCCeEEEEEEECHH--HhHHHHhC--cCCc
Confidence 4569999999999997 47888888775 3488999999999999999998863 34444333 3599
Q ss_pred EEEEEEc
Q psy8199 115 KYLAMVW 121 (965)
Q Consensus 115 ~Y~a~v~ 121 (965)
+|.|.+.
T Consensus 69 ~Y~~~~~ 75 (316)
T 1sgv_A 69 SYAATIR 75 (316)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 9999775
|
| >3k13_A 5-methyltetrahydrofolate-homocysteine methyltrans; 5-methyltetrahydrofolate,methyltransferase, TIM barrel, STRU genomics, PSI-2; HET: MSE THH GOL; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.35 E-value=0.12 Score=54.14 Aligned_cols=216 Identities=11% Similarity=0.077 Sum_probs=127.9
Q ss_pred cCCCHHHHHHHHHHHHHCCCCEEEEeeccCCCCc-ccHHHHHHHHHHHHh-cCcEeEEecCCCCHHHHHHHHH--hCCCe
Q psy8199 713 KILSIESVITAAQKAKSDGATRFCMGAAWRELKD-RDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKK--VGLDY 788 (965)
Q Consensus 713 ~~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~-~~~~~~~~~~~~i~~-~~~~i~~~~~~~~~e~l~~Lk~--aG~~~ 788 (965)
+..+.+++++.+++..+.|++-+.+.+|..+... ..+.+++..++.+++ .++.++ +...+.++++.--+ +|.+.
T Consensus 32 ~~~~~~~a~~~A~~~v~~GAdiIDIg~g~~~v~~~eem~rvv~~i~~~~~~~~vpis--IDT~~~~V~eaaL~~~~Ga~i 109 (300)
T 3k13_A 32 NEKKYDEALSIARQQVEDGALVIDVNMDDGLLDARTEMTTFLNLIMSEPEIARVPVM--IDSSKWEVIEAGLKCLQGKSI 109 (300)
T ss_dssp HTTCHHHHHHHHHHHHHTTCSEEEEECCCTTSCHHHHHHHHHHHHHTCHHHHTSCEE--EECSCHHHHHHHHHHCSSCCE
T ss_pred hcCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHhhhcCCCeEE--EeCCCHHHHHHHHHhcCCCCE
Confidence 3467999999999999999999999776433221 234555555554433 344444 55568899888887 68754
Q ss_pred EeccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEE--EecCCCHHHHHHHHHHHHhc-----CCCCCceeec
Q psy8199 789 YNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGI--IGLSESRDQRAELIFQLANL-----NPYPESVPIN 861 (965)
Q Consensus 789 i~i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i--~Gl~et~ed~~~~l~~l~~l-----~~~~~~i~~~ 861 (965)
|+ .+.....-+++.+.++.++++|..+...-+ -|.+.|.++..+..+.+.++ +--++.|.+-
T Consensus 110 IN-----------dIs~~~~d~~~~~~~~l~a~~ga~vV~mh~d~~G~p~t~~~~~~i~~r~~~~~~~~~Gi~~~~IilD 178 (300)
T 3k13_A 110 VN-----------SISLKEGEEVFLEHARIIKQYGAATVVMAFDEKGQADTAARKIEVCERAYRLLVDKVGFNPHDIIFD 178 (300)
T ss_dssp EE-----------EECSTTCHHHHHHHHHHHHHHTCEEEEESEETTEECCSHHHHHHHHHHHHHHHHHHTCCCGGGEEEE
T ss_pred EE-----------eCCcccCChhHHHHHHHHHHhCCeEEEEeeCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEe
Confidence 42 222222233445777889999997765444 46778888877666555444 4011334444
Q ss_pred cccccCCC-CCCCCCC---CCHHHHHHHHHHHHHHCCCCceeccccccccchh------------hHHHHhhcCccEEee
Q psy8199 862 NLVQIKGT-PLYGSSI---LDPLEFIRTIAVARITMPTSRIRMSAGRKEMGET------------TQAFCFLAGANSIFY 925 (965)
Q Consensus 862 ~~~P~~gT-~l~~~~~---~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~------------~~~~~l~~Gan~~~~ 925 (965)
||. ++..... ....++++.+..+|..+|...+-+..++...+.. +-..|+.+|.|..++
T Consensus 179 -----Pgig~~gk~~~~~~~~~~~~l~~l~~lk~~lPg~pvl~G~SnkSfglp~~~~~R~~~n~~fl~~ai~~Gld~~Iv 253 (300)
T 3k13_A 179 -----PNVLAVATGIEEHNNYAVDFIEATGWIRKNLPGAHVSGGVSNLSFSFRGNNYIREAMHAVFLYHAIQQGMDMGIV 253 (300)
T ss_dssp -----CCCCCCSSSCGGGTTHHHHHHHHHHHHHHHSTTCEECCBGGGGGGGGTTCHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred -----CCCCccCCChHHhhHHHHHHHHHHHHHHHhCCCCCEEEEECcccccCCCCcchhHHHHHHHHHHHHHcCCCEEec
Confidence 554 2332111 1146777888888877887777777776544332 233567789997665
Q ss_pred CCccccCCCCCChhhHHHHHH
Q psy8199 926 GDKLLTTDNTKTNDDSKLLKK 946 (965)
Q Consensus 926 g~~~~t~~~~~~~~~~~~~~~ 946 (965)
.-.-...-..=+++.++..++
T Consensus 254 n~~~~~~~~~i~~~~~~~~~~ 274 (300)
T 3k13_A 254 NPGTSVLYSDIPADTLEKIED 274 (300)
T ss_dssp CCC-CCCGGGSCHHHHHHHHH
T ss_pred CcchhhHHhhcCHHHHHHHHH
Confidence 432111111123455666655
|
| >2aus_C Pseudouridine synthase; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_A 3lwo_A* 3lwq_A* 3lwp_A 3lwv_A 3hax_A* 2hvy_A* 3hay_A* 2ey4_A 2rfk_A 3mqk_A 3hjw_A* 3hjy_A | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0023 Score=68.33 Aligned_cols=73 Identities=25% Similarity=0.321 Sum_probs=57.5
Q ss_pred EecCcEEEEECCCCCeeeeCCCCCcccHHHHHHHHCCcccCCCCccccccCCCCCceEEEeEeCHHHHHHHHHHHHcCCc
Q psy8199 33 YEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIV 112 (965)
Q Consensus 33 ~e~~~~lv~nKP~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~RLD~~tsGlll~a~~~~~~~~l~~~~~~~~~ 112 (965)
|..+.++++|||.|+.|| .+++.+++.+. ..+++..+.||...||+|+++-... .++...+.. .
T Consensus 43 ~~~~Gil~vdKP~g~tS~--------~vv~~vr~~~~----~~KvGH~GTLDP~atGvL~v~~g~a--Tk~~~~l~~--~ 106 (334)
T 2aus_C 43 HIQYGVINLDKPPGPTSH--------EVVAWIKRILN----LEKAGHGGTLDPKVSGVLPVALERA--TRVVQALLP--A 106 (334)
T ss_dssp HHHTEEEEEEECSSSCHH--------HHHHHHHHHTT----CSCEEESSCCCTTCEEEEEEEEGGG--GGGGGGGTT--C
T ss_pred hccCcEEEEECCCCCCHH--------HHHHHHHHHhC----cceeccccccCCccceeEEEEeChh--hhhHHHhcc--c
Confidence 456789999999999987 47788877764 3588999999999999999999753 345453333 5
Q ss_pred CeEEEEEEc
Q psy8199 113 QRKYLAMVW 121 (965)
Q Consensus 113 ~K~Y~a~v~ 121 (965)
.|+|.|.+.
T Consensus 107 ~K~Y~~~~~ 115 (334)
T 2aus_C 107 GKEYVALMH 115 (334)
T ss_dssp CEEEEEEEE
T ss_pred CcEEEEEEE
Confidence 899999875
|
| >2apo_A Probable tRNA pseudouridine synthase B; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: b.122.1.1 d.265.1.2 | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0027 Score=67.85 Aligned_cols=73 Identities=16% Similarity=0.294 Sum_probs=57.9
Q ss_pred EecCcEEEEECCCCCeeeeCCCCCcccHHHHHHHHCCcccCCCCccccccCCCCCceEEEeEeCHHHHHHHHHHHHcCCc
Q psy8199 33 YEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIV 112 (965)
Q Consensus 33 ~e~~~~lv~nKP~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~RLD~~tsGlll~a~~~~~~~~l~~~~~~~~~ 112 (965)
|..+.++++|||.|+.|+ .+++.+++.+. ..+++..+.||..+||+|+++-... .++...+.. .
T Consensus 63 ~~~~Gil~vdKP~G~TS~--------~vv~~vr~~l~----~~KvGH~GTLDP~AtGvL~v~~G~a--Tk~~~~l~~--~ 126 (357)
T 2apo_A 63 LIKYGVVVVDKPRGPTSH--------EVSTWVKKILN----LDKAGHGGTLDPKVTGVLPVALERA--TKTIPMWHI--P 126 (357)
T ss_dssp HHHTEEEEEEECSSSCHH--------HHHHHHHHHTT----CSCEEESSCCCTTCEEEEEEEEGGG--GGGGGGTTS--S
T ss_pred hccCcEEEEECCCCCCHH--------HHHHHHHHHhC----ccccccccccCCCceeEEEEEeCHH--HhHHHHhcc--C
Confidence 456679999999999997 47788887764 3588999999999999999999753 344443333 7
Q ss_pred CeEEEEEEc
Q psy8199 113 QRKYLAMVW 121 (965)
Q Consensus 113 ~K~Y~a~v~ 121 (965)
.|+|.|.+.
T Consensus 127 ~K~Y~~~~~ 135 (357)
T 2apo_A 127 PKEYVCLMH 135 (357)
T ss_dssp CEEEEEEEE
T ss_pred CcEEEEEEE
Confidence 899999875
|
| >3u28_A H/ACA ribonucleoprotein complex subunit 4; pseudouridine synthase, pseudouridylation, H/ACA RNA; 1.90A {Saccharomyces cerevisiae} PDB: 3uai_A | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0035 Score=67.42 Aligned_cols=73 Identities=21% Similarity=0.329 Sum_probs=57.1
Q ss_pred EecCcEEEEECCCCCeeeeCCCCCcccHHHHHHHHCCcccCCCCccccccCCCCCceEEEeEeCHHHHHHHHHHHHcCCc
Q psy8199 33 YEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIV 112 (965)
Q Consensus 33 ~e~~~~lv~nKP~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~RLD~~tsGlll~a~~~~~~~~l~~~~~~~~~ 112 (965)
|..+.+|++|||.|+.+| .++..+++.+. ..+++..+.||...||+|+++-... .++...+.. .
T Consensus 56 ~~~~Gil~ldKP~G~TS~--------dvv~~vrr~l~----~kKvGH~GTLDP~AtGvL~v~iG~a--TKl~~~l~~--~ 119 (400)
T 3u28_A 56 YISSGVINLDKPSNPSSH--------EVVAWIKRILR----CEKTGHSGTLDPKVTGCLIVCIDRA--TRLVKSQQG--A 119 (400)
T ss_dssp HHHTEEEEEEECSSSCHH--------HHHHHHHHHHT----CSCEEESSCCCTTCEEEEEEEEGGG--GGGHHHHHH--S
T ss_pred hccCcEEEEECCCCCCHH--------HHHHHHHHHhC----cCcccccCCCCCCCeEEEEEEEChH--HhHhHHhcC--C
Confidence 555789999999999997 47777877764 3588999999999999999998753 334444443 5
Q ss_pred CeEEEEEEc
Q psy8199 113 QRKYLAMVW 121 (965)
Q Consensus 113 ~K~Y~a~v~ 121 (965)
.|+|.|.+.
T Consensus 120 ~K~Y~a~~~ 128 (400)
T 3u28_A 120 GKEYVCIVR 128 (400)
T ss_dssp CEEEEEEEE
T ss_pred CcEEEEEEE
Confidence 899999775
|
| >3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A* | Back alignment and structure |
|---|
Probab=96.12 E-value=0.37 Score=49.89 Aligned_cols=195 Identities=14% Similarity=0.121 Sum_probs=118.2
Q ss_pred HHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHh-cCcEeEEecCCCCHHHHHHHHHhCCCeEeccCCCCH
Q psy8199 719 SVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSP 797 (965)
Q Consensus 719 ei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~-~~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~~es~~ 797 (965)
...+.++.+.+.|+..+.+.+-. ..+.--.+.++.+++ ..+.+-.....+++..++..+++|.|.+.++....
T Consensus 73 ~p~~~A~~y~~~GA~~isvltd~-----~~f~Gs~~~l~~ir~~v~lPvl~kdfiid~~qv~~A~~~GAD~VlLi~a~l- 146 (272)
T 3qja_A 73 DPAKLAQAYQDGGARIVSVVTEQ-----RRFQGSLDDLDAVRASVSIPVLRKDFVVQPYQIHEARAHGADMLLLIVAAL- 146 (272)
T ss_dssp CHHHHHHHHHHTTCSEEEEECCG-----GGHHHHHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEEEGGGS-
T ss_pred CHHHHHHHHHHcCCCEEEEecCh-----hhcCCCHHHHHHHHHhCCCCEEECccccCHHHHHHHHHcCCCEEEEecccC-
Confidence 34455667778899999986542 112222345555554 56777667778888889999999999999876431
Q ss_pred HHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCCCCCC
Q psy8199 798 KLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSIL 877 (965)
Q Consensus 798 ~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~~~~~ 877 (965)
+.++..+.++.+++.|+.+...+ .|.+++.. +.+++ .+.|.++. ...+.+ .+
T Consensus 147 ----------~~~~l~~l~~~a~~lGl~~lvev-----~t~ee~~~----A~~~G--ad~IGv~~---r~l~~~----~~ 198 (272)
T 3qja_A 147 ----------EQSVLVSMLDRTESLGMTALVEV-----HTEQEADR----ALKAG--AKVIGVNA---RDLMTL----DV 198 (272)
T ss_dssp ----------CHHHHHHHHHHHHHTTCEEEEEE-----SSHHHHHH----HHHHT--CSEEEEES---BCTTTC----CB
T ss_pred ----------CHHHHHHHHHHHHHCCCcEEEEc-----CCHHHHHH----HHHCC--CCEEEECC---Cccccc----cc
Confidence 13455566778888888753221 56666443 34568 88888873 221212 12
Q ss_pred CHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeCCccccCCCCCChhhHHHHHHcCCCcchh
Q psy8199 878 DPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLLKKLGINTRNI 954 (965)
Q Consensus 878 ~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~~~~~g~~~~~~ 954 (965)
+.+...++ +..+|.....+..+-... .+--..+..+||+++.+|+.+.... ++.+..+.+.+.+..|..+
T Consensus 199 dl~~~~~l----~~~v~~~~pvVaegGI~t-~edv~~l~~~GadgvlVGsal~~a~--dp~~~~~~l~~~~~~~~~~ 268 (272)
T 3qja_A 199 DRDCFARI----APGLPSSVIRIAESGVRG-TADLLAYAGAGADAVLVGEGLVTSG--DPRAAVADLVTAGTHPSCP 268 (272)
T ss_dssp CTTHHHHH----GGGSCTTSEEEEESCCCS-HHHHHHHHHTTCSEEEECHHHHTCS--CHHHHHHHHHTTTTCSCCC
T ss_pred CHHHHHHH----HHhCcccCEEEEECCCCC-HHHHHHHHHcCCCEEEEcHHHhCCC--CHHHHHHHHHhhhcCCcCC
Confidence 33333322 223553222233222121 3333355789999999999876554 5777788888887766543
|
| >3lot_A Uncharacterized protein; protein of unknown function, structural genomics, joint CENT structural genomics, JCSG; HET: MSE; 1.89A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.49 Score=49.65 Aligned_cols=235 Identities=11% Similarity=0.073 Sum_probs=139.0
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEeecc--CCCCcccHHHHHHHHHHHHh-cCcEeEEecCC------CCHHHHHHHHHh
Q psy8199 714 ILSIESVITAAQKAKSDGATRFCMGAAW--RELKDRDLDNIENMICEVKK-IGLETCLTLGM------LNENQAYRLKKV 784 (965)
Q Consensus 714 ~~~~eei~~~~~~~~~~g~~~i~l~~g~--~~~~~~~~~~~~~~~~~i~~-~~~~i~~~~~~------~~~e~l~~Lk~a 784 (965)
..+++||.+.+.+..+.|+.-+++-.=. +.-+..+.+.+.+++..|++ .++-|.++.|- ..++.+..+.+.
T Consensus 28 PvTpeEia~~A~~~~~AGAaivHlHvRdp~dG~ps~d~~~y~e~i~~IR~~~d~iI~~TTgg~~~~~~~~eeR~~~~~~~ 107 (314)
T 3lot_A 28 PVTPDQIVEEAVKAAEAGAGMVHIHARDPKDGRPTTDVEVFRYICREIKKQSDVVINVTTGGGGTLGIPVEERAKVVPAL 107 (314)
T ss_dssp CCSHHHHHHHHHHHHHHTCSEEEECEECTTTCCEECCHHHHHHHHHHHHHHCCCEEEECSSTTGGGTCCHHHHTTHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeecCCCCCCcCCCHHHHHHHHHHHHhcCCeEEEeCCCCcCCCCCCHHHHHHHHHhc
Confidence 4899999999999999999888885433 22234678899999999986 46666665442 234556666676
Q ss_pred CCCeEeccCCC-C-H--HHH-------------------hcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHH
Q psy8199 785 GLDYYNHNLDT-S-P--KLY-------------------GDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQR 841 (965)
Q Consensus 785 G~~~i~i~~es-~-~--~~~-------------------~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~ 841 (965)
..+..+++.-| + . +.. ..+.. .++++..+.++.+++.|++... .+| +..++
T Consensus 108 ~Pe~aSln~Gs~Nf~~~~~~~~~~~~~~~~e~~~~~~~~~~v~~-N~~~~i~~~~~~~~e~Gi~pE~-e~f----d~g~l 181 (314)
T 3lot_A 108 KPEIATFNMGSMNFAIHPLLKKYKEFKYDWEPEYLEMTRDIVFR-NTFKDLEALSRIFKENDTKPEL-ECY----DIGQI 181 (314)
T ss_dssp CCSEEEEECCCEECBCTTHHHHCCCCSSTHHHHHHHHGGGCEEC-CCHHHHHHHHHHHHHHTCEEEE-EEC----SHHHH
T ss_pred CCceeeecCCCcccccccccccccccccccchhhcccCCCceec-CCHHHHHHHHHHHHHcCCEEEE-EEE----CHHHH
Confidence 77777777655 2 1 111 12222 3788899999999999998764 444 33333
Q ss_pred HHHHHHHHhcCCCCCceeeccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCC--CCceeccccccccchhhHHHHhhcC
Q psy8199 842 AELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMP--TSRIRMSAGRKEMGETTQAFCFLAG 919 (965)
Q Consensus 842 ~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp--~~~i~i~~~~~~~~~~~~~~~l~~G 919 (965)
. .+..+.+-+....-..++..+ |-+- . .+.+++.+.-++..+..+++ +....+ ++.....-.+...++..|
T Consensus 182 ~-~~~~l~~~Gll~~p~~~~~Vl---Gv~~-G-~~~~p~~L~~~~~~~~~l~~~~~~~Wsv-~g~Gr~q~p~~~~A~~~G 254 (314)
T 3lot_A 182 Y-NTAFMFHEGYLEPPLRLQFIH---GILG-G-IGTAVEDVLFMKQTADRLIGRENYTWSL-VGAGRFQMPLGTLAVIMG 254 (314)
T ss_dssp H-HHHHHHHTTCSCSSEEEEEEE---CCBT-S-CCCCHHHHHHHHHHHHHHTCGGGEEEEE-EECGGGHHHHHHHHHHTT
T ss_pred H-HHHHHHHCCCCCCCceEEEEe---cCCC-C-CCCCHHHHHHHHHHhhhccCCCCCeEEE-EecChhhHHHHHHHHHcC
Confidence 3 344445545211111222111 3221 1 24578888887777755565 321111 111111123445677888
Q ss_pred ccEE-eeCCccccCCCC----C---ChhhHHHHHHcCCCcchhhhHHhhhh
Q psy8199 920 ANSI-FYGDKLLTTDNT----K---TNDDSKLLKKLGINTRNIKIKMKNNI 962 (965)
Q Consensus 920 an~~-~~g~~~~t~~~~----~---~~~~~~~~~~~g~~~~~~~~~~~~~~ 962 (965)
-|.- =.+|++.-..|. | +++..++++++|+.++. .+|.++.|
T Consensus 255 GhvRVGlEDnl~~~~G~lA~sNa~lV~~~~~i~~~lGr~vAT-p~EAR~iL 304 (314)
T 3lot_A 255 GDVRVGLEDSLYIERGKLAKSNAEQVEKMVRIVKELGKRPAT-PDEVREIL 304 (314)
T ss_dssp CEEEESTTTCSEEETTEECSCHHHHHHHHHHHHHHTTCEECC-HHHHHHHH
T ss_pred CceEEccCcccccCCCCCCCCHHHHHHHHHHHHHHcCCCCCC-HHHHHHHh
Confidence 8832 234555444442 2 45667888999998775 44555544
|
| >3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A | Back alignment and structure |
|---|
Probab=95.72 E-value=0.13 Score=51.76 Aligned_cols=197 Identities=14% Similarity=0.147 Sum_probs=110.3
Q ss_pred CCHHHHHHHHHHHHHCCCC--EEEEeeccC-CCCcccHHHHHHHHHHHH--hcCcEeEEecCCCCHHHHHHHHHhCCCeE
Q psy8199 715 LSIESVITAAQKAKSDGAT--RFCMGAAWR-ELKDRDLDNIENMICEVK--KIGLETCLTLGMLNENQAYRLKKVGLDYY 789 (965)
Q Consensus 715 ~~~eei~~~~~~~~~~g~~--~i~l~~g~~-~~~~~~~~~~~~~~~~i~--~~~~~i~~~~~~~~~e~l~~Lk~aG~~~i 789 (965)
.+...+.++++.+.+.|++ ++-+..|.+ |......+ +++.++... +..+.+.+-.... ...++.+.++|++.+
T Consensus 14 ~D~~~l~~~i~~l~~~g~d~~h~DVmDg~Fvpn~~~G~~-~v~~ir~~~~~~~~~dvhLmv~~p-~~~i~~~~~aGad~i 91 (228)
T 3ovp_A 14 SDLANLGAECLRMLDSGADYLHLDVMDGHFVPNITFGHP-VVESLRKQLGQDPFFDMHMMVSKP-EQWVKPMAVAGANQY 91 (228)
T ss_dssp SCGGGHHHHHHHHHHTTCSCEEEEEEBSSSSSCBCBCHH-HHHHHHHHHCSSSCEEEEEECSCG-GGGHHHHHHHTCSEE
T ss_pred CCchhHHHHHHHHHHcCCCEEEEEecCCCcCcccccCHH-HHHHHHHhhCCCCcEEEEEEeCCH-HHHHHHHHHcCCCEE
Confidence 3455566777777778877 455556654 32333343 344444442 2333444433222 356889999999999
Q ss_pred eccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccccccCCC
Q psy8199 790 NHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGT 869 (965)
Q Consensus 790 ~i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT 869 (965)
.+..|+.+ +..+.++.++++|+++.. .+- +.|..+.++ .+.+. .+.|-++.. .||.
T Consensus 92 tvH~Ea~~-------------~~~~~i~~i~~~G~k~gv--al~-p~t~~e~l~---~~l~~---~D~Vl~msv--~pGf 147 (228)
T 3ovp_A 92 TFHLEATE-------------NPGALIKDIRENGMKVGL--AIK-PGTSVEYLA---PWANQ---IDMALVMTV--EPGF 147 (228)
T ss_dssp EEEGGGCS-------------CHHHHHHHHHHTTCEEEE--EEC-TTSCGGGTG---GGGGG---CSEEEEESS--CTTT
T ss_pred EEccCCch-------------hHHHHHHHHHHcCCCEEE--EEc-CCCCHHHHH---HHhcc---CCeEEEeee--cCCC
Confidence 99876632 135677788899987643 332 334332222 12222 466655533 3554
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeCCccccCCCCCChhhHHHHHH
Q psy8199 870 PLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLLKK 946 (965)
Q Consensus 870 ~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~~~~ 946 (965)
-=.... + ..++.+...|...++..+-+..+-. .+....+..+|||.+++|..+ +... ++.+.++.+++
T Consensus 148 ~Gq~f~---~-~~l~ki~~lr~~~~~~~I~VdGGI~---~~t~~~~~~aGAd~~VvGsaI-f~a~-dp~~~~~~l~~ 215 (228)
T 3ovp_A 148 GGQKFM---E-DMMPKVHWLRTQFPSLDIEVDGGVG---PDTVHKCAEAGANMIVSGSAI-MRSE-DPRSVINLLRN 215 (228)
T ss_dssp CSCCCC---G-GGHHHHHHHHHHCTTCEEEEESSCS---TTTHHHHHHHTCCEEEESHHH-HTCS-CHHHHHHHHHH
T ss_pred CCcccC---H-HHHHHHHHHHHhcCCCCEEEeCCcC---HHHHHHHHHcCCCEEEEeHHH-hCCC-CHHHHHHHHHH
Confidence 222222 2 2233355556667776676776553 334456789999999999755 4432 45665555543
|
| >3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A* | Back alignment and structure |
|---|
Probab=95.67 E-value=0.17 Score=51.12 Aligned_cols=193 Identities=11% Similarity=0.100 Sum_probs=105.3
Q ss_pred CHHHHHHHHHHHHHCCCCE--EEEeeccC-CCCcccHHHHHHHHHHHHhc-CcEeEEecCCCC-HHHHHHHHHhCCCeEe
Q psy8199 716 SIESVITAAQKAKSDGATR--FCMGAAWR-ELKDRDLDNIENMICEVKKI-GLETCLTLGMLN-ENQAYRLKKVGLDYYN 790 (965)
Q Consensus 716 ~~eei~~~~~~~~~~g~~~--i~l~~g~~-~~~~~~~~~~~~~~~~i~~~-~~~i~~~~~~~~-~e~l~~Lk~aG~~~i~ 790 (965)
+.-.+.++++.+ +.|++. +-+..|.+ |...... +.++.+++. ...+-++.-..+ ...++.+.++|.+.+.
T Consensus 11 D~~~l~~~i~~~-~~gad~lHvDvmDG~fvpn~t~G~----~~v~~lr~~~~~~~dvhLmv~dp~~~i~~~~~aGAd~it 85 (231)
T 3ctl_A 11 DLLKFKEQIEFI-DSHADYFHIDIMDGHFVPNLTLSP----FFVSQVKKLATKPLDCHLMVTRPQDYIAQLARAGADFIT 85 (231)
T ss_dssp CGGGHHHHHHHH-HTTCSCEEEEEECSSSSSCCCBCH----HHHHHHHTTCCSCEEEEEESSCGGGTHHHHHHHTCSEEE
T ss_pred ChhhHHHHHHHH-HcCCCEEEEEEEeCccCccchhcH----HHHHHHHhccCCcEEEEEEecCHHHHHHHHHHcCCCEEE
Confidence 444566667777 778775 55556654 3222223 355556652 333333222222 3357999999999999
Q ss_pred ccCCC-CHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccccccCCC
Q psy8199 791 HNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGT 869 (965)
Q Consensus 791 i~~es-~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT 869 (965)
+-.|+ .+ ...++++.+++.|.++...+ -+.|+.+.++. +.+ + .+.|-++... ||+
T Consensus 86 vh~Ea~~~-------------~~~~~i~~i~~~G~k~gv~l---np~tp~~~~~~---~l~-~--~D~VlvmsV~--pGf 141 (231)
T 3ctl_A 86 LHPETING-------------QAFRLIDEIRRHDMKVGLIL---NPETPVEAMKY---YIH-K--ADKITVMTVD--PGF 141 (231)
T ss_dssp ECGGGCTT-------------THHHHHHHHHHTTCEEEEEE---CTTCCGGGGTT---TGG-G--CSEEEEESSC--TTC
T ss_pred ECcccCCc-------------cHHHHHHHHHHcCCeEEEEE---ECCCcHHHHHH---HHh-c--CCEEEEeeec--cCc
Confidence 88765 42 12467888899998875433 23444333221 112 2 5777666444 454
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCC----CCceeccccccccchhhHHHHhhcCccEEeeC-CccccCCCCC-ChhhHHH
Q psy8199 870 PLYGSSILDPLEFIRTIAVARITMP----TSRIRMSAGRKEMGETTQAFCFLAGANSIFYG-DKLLTTDNTK-TNDDSKL 943 (965)
Q Consensus 870 ~l~~~~~~~~~~~~~~ia~~R~~lp----~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g-~~~~t~~~~~-~~~~~~~ 943 (965)
-=+...+ ..++.+...|.+.+ +..|-+.++-+ .+....+..+|||.+++| ..+.... + +.+.++.
T Consensus 142 ggQ~f~~----~~l~kI~~lr~~~~~~~~~~~I~VdGGI~---~~~~~~~~~aGAd~~V~G~saif~~~--d~~~~~~~~ 212 (231)
T 3ctl_A 142 AGQPFIP----EMLDKLAELKAWREREGLEYEIEVDGSCN---QATYEKLMAAGADVFIVGTSGLFNHA--ENIDEAWRI 212 (231)
T ss_dssp SSCCCCT----THHHHHHHHHHHHHHHTCCCEEEEESCCS---TTTHHHHHHHTCCEEEECTTTTGGGC--SSHHHHHHH
T ss_pred CCccccH----HHHHHHHHHHHHHhccCCCceEEEECCcC---HHHHHHHHHcCCCEEEEccHHHhCCC--CcHHHHHHH
Confidence 3222222 22333333444432 34455565443 233445689999999999 7654322 3 5566665
Q ss_pred HHH
Q psy8199 944 LKK 946 (965)
Q Consensus 944 ~~~ 946 (965)
+++
T Consensus 213 l~~ 215 (231)
T 3ctl_A 213 MTA 215 (231)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
|
| >1eye_A DHPS 1, dihydropteroate synthase I; alpha-beta barrel, transferase; HET: PMM; 1.70A {Mycobacterium tuberculosis H37RV} SCOP: c.1.21.1 | Back alignment and structure |
|---|
Probab=95.47 E-value=0.16 Score=52.61 Aligned_cols=137 Identities=11% Similarity=0.180 Sum_probs=86.6
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEeeccCCC------CcccHHHHHHHHHHHHhcCcEeEEecCCCCHHHHHHHHHhCCC
Q psy8199 714 ILSIESVITAAQKAKSDGATRFCMGAAWREL------KDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLD 787 (965)
Q Consensus 714 ~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~------~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~e~l~~Lk~aG~~ 787 (965)
+.+++++++.++++.+.|+.-+-+.+....+ ....++++...++.+++.++.++ ....+.++++.-.++|.+
T Consensus 25 ~~~~~~a~~~a~~~v~~GAdiIDIGgestrpga~~v~~~eE~~Rv~pvi~~l~~~~~piS--IDT~~~~va~aAl~aGa~ 102 (280)
T 1eye_A 25 YLDLDDAVKHGLAMAAAGAGIVDVGGESSRPGATRVDPAVETSRVIPVVKELAAQGITVS--IDTMRADVARAALQNGAQ 102 (280)
T ss_dssp CCSHHHHHHHHHHHHHTTCSEEEEECC--------------HHHHHHHHHHHHHTTCCEE--EECSCHHHHHHHHHTTCC
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEECCccCCCCCCCCCHHHHHHHHHHHHHHhhcCCCEEE--EeCCCHHHHHHHHHcCCC
Confidence 4789999999999999999999997633211 14457888888888876554443 444566666666666666
Q ss_pred eEe-ccCCC-CHHHHhcc----------cC---CC----------C-----HHHHHHHHHHHHHcCCc---eeeeEEEec
Q psy8199 788 YYN-HNLDT-SPKLYGDI----------IS---TR----------D-----YENRLNTLKNVRNVGIN---ICCGGIIGL 834 (965)
Q Consensus 788 ~i~-i~~es-~~~~~~~i----------~~---~~----------~-----~~~~~~~i~~~~~~Gi~---v~~~~i~Gl 834 (965)
.|+ ++-.. +++.++-+ +. +. . .+...+.++.+.++|++ +...--+|+
T Consensus 103 iINdvsg~~~d~~m~~~~a~~~~~vVlmh~~G~p~tm~~~~~~y~dv~~~v~~~l~~~i~~a~~~Gi~~~~IilDPg~Gf 182 (280)
T 1eye_A 103 MVNDVSGGRADPAMGPLLAEADVPWVLMHWRAVSADTPHVPVRYGNVVAEVRADLLASVADAVAAGVDPARLVLDPGLGF 182 (280)
T ss_dssp EEEETTTTSSCTTHHHHHHHHTCCEEEECCCCSCTTCTTSCCCCSSHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCTTS
T ss_pred EEEECCCCCCCHHHHHHHHHhCCeEEEEcCCCCCcchhhcCcchhHHHHHHHHHHHHHHHHHHHcCCChhhEEEECCCCc
Confidence 654 22222 33333211 10 00 1 44455778888899995 555555566
Q ss_pred CCCHHHHHHHHHHHHhcC
Q psy8199 835 SESRDQRAELIFQLANLN 852 (965)
Q Consensus 835 ~et~ed~~~~l~~l~~l~ 852 (965)
+.+.++-.++++.+.++.
T Consensus 183 ~k~~~~n~~ll~~l~~~~ 200 (280)
T 1eye_A 183 AKTAQHNWAILHALPELV 200 (280)
T ss_dssp SCCHHHHHHHHHTHHHHH
T ss_pred ccCHHHHHHHHHHHHHhh
Confidence 788888888888777765
|
| >1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A | Back alignment and structure |
|---|
Probab=95.29 E-value=0.58 Score=48.04 Aligned_cols=206 Identities=16% Similarity=0.119 Sum_probs=116.4
Q ss_pred HHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHh-cCcEeEEecCCCCHHHHHHHHHhCCCeEeccCCCCHH
Q psy8199 720 VITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPK 798 (965)
Q Consensus 720 i~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~-~~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~~es~~~ 798 (965)
..+.++.+.+.|+..+.+...... ........+.++.+++ .++.+..+.+..+.+.++.+.++|++.+.++-+.
T Consensus 32 ~~~~a~~~~~~Gad~i~v~d~~~~--~~~~~~~~~~i~~i~~~~~ipvi~~ggI~~~~~~~~~~~~Gad~V~lg~~~--- 106 (253)
T 1thf_D 32 PVELGKFYSEIGIDELVFLDITAS--VEKRKTMLELVEKVAEQIDIPFTVGGGIHDFETASELILRGADKVSINTAA--- 106 (253)
T ss_dssp HHHHHHHHHHTTCCEEEEEESSCS--SSHHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHTTCSEEEESHHH---
T ss_pred HHHHHHHHHHcCCCEEEEECCchh--hcCCcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCEEEEChHH---
Confidence 344456667889999988764322 1234456777788876 5788999999999999999999999999888633
Q ss_pred HHhcccCCCCHHHHHHHHHHHHH--cCCceeee------EEEecCCC---HHHHHHHHHHHHhcCCCCCceeeccccccC
Q psy8199 799 LYGDIISTRDYENRLNTLKNVRN--VGINICCG------GIIGLSES---RDQRAELIFQLANLNPYPESVPINNLVQIK 867 (965)
Q Consensus 799 ~~~~i~~~~~~~~~~~~i~~~~~--~Gi~v~~~------~i~Gl~et---~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~ 867 (965)
+.. ++...+.++.... ..+.+.+. .+.=.+.. ..+..+.++.+.+++ .+.+.++...+ .
T Consensus 107 -l~~------p~~~~~~~~~~g~~~i~~~~~~~~~~g~~~v~~~g~~~~~~~~~~e~~~~~~~~G--~~~i~~~~~~~-~ 176 (253)
T 1thf_D 107 -VEN------PSLITQIAQTFGSQAVVVAIDAKRVDGEFMVFTYSGKKNTGILLRDWVVEVEKRG--AGEILLTSIDR-D 176 (253)
T ss_dssp -HHC------THHHHHHHHHHCGGGEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHHHHTT--CSEEEEEETTT-T
T ss_pred -HhC------hHHHHHHHHHcCCCcEEEEEEEEccCCcEEEEECCCccccCCCHHHHHHHHHHCC--CCEEEEEeccC-C
Confidence 111 1223333333321 11222221 11113321 113455556667777 67665543222 1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeCCccccCCCCCChhhHHHHHHc
Q psy8199 868 GTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLLKKL 947 (965)
Q Consensus 868 gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~~~~~ 947 (965)
|+. ..++.+.+.++ +... +..+-..++-.. ..+... ++.+||+++++|..++... .++++..+.+++.
T Consensus 177 g~~----~g~~~~~~~~l----~~~~-~ipvia~GGI~~-~~d~~~-~~~~Gadgv~vGsal~~~~-~~~~~~~~~l~~~ 244 (253)
T 1thf_D 177 GTK----SGYDTEMIRFV----RPLT-TLPIIASGGAGK-MEHFLE-AFLAGADAALAASVFHFRE-IDVRELKEYLKKH 244 (253)
T ss_dssp TSC----SCCCHHHHHHH----GGGC-CSCEEEESCCCS-HHHHHH-HHHTTCSEEEESHHHHTTC-SCHHHHHHHHHHT
T ss_pred CCC----CCCCHHHHHHH----HHhc-CCCEEEECCCCC-HHHHHH-HHHcCChHHHHHHHHHcCC-CCHHHHHHHHHHc
Confidence 221 11233322222 2222 222333332222 134443 4689999999998765433 3688889999999
Q ss_pred CCCcc
Q psy8199 948 GINTR 952 (965)
Q Consensus 948 g~~~~ 952 (965)
|+...
T Consensus 245 g~~~~ 249 (253)
T 1thf_D 245 GVNVR 249 (253)
T ss_dssp TCCCC
T ss_pred CCccc
Confidence 97543
|
| >3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=95.26 E-value=1.8 Score=44.45 Aligned_cols=174 Identities=11% Similarity=0.061 Sum_probs=107.8
Q ss_pred HHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHh-cCcEeEEecCCCCHHHHHHHHHhCCCeEeccCCCCHHH
Q psy8199 721 ITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKL 799 (965)
Q Consensus 721 ~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~-~~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~~es~~~~ 799 (965)
.+.++.+.+.|+..+.+.+...- .....+++ +.+++ .++.+-...+..++..+...+.+|.|.+.+....-
T Consensus 82 ~~~A~~y~~~GA~~IsVltd~~~-f~Gs~~~L----~~ir~~v~lPVl~Kdfi~d~~qi~ea~~~GAD~VlLi~a~L--- 153 (272)
T 3tsm_A 82 PALAKAYEEGGAACLSVLTDTPS-FQGAPEFL----TAARQACSLPALRKDFLFDPYQVYEARSWGADCILIIMASV--- 153 (272)
T ss_dssp HHHHHHHHHTTCSEEEEECCSTT-TCCCHHHH----HHHHHTSSSCEEEESCCCSTHHHHHHHHTTCSEEEEETTTS---
T ss_pred HHHHHHHHHCCCCEEEEeccccc-cCCCHHHH----HHHHHhcCCCEEECCccCCHHHHHHHHHcCCCEEEEccccc---
Confidence 44456666789999998775322 22344544 33444 57777777788899999999999999999886331
Q ss_pred HhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCCCCCCCH
Q psy8199 800 YGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDP 879 (965)
Q Consensus 800 ~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~~~~~~~ 879 (965)
+.++..+.++.+++.|+.+-.-+ +|.+|+ +.+.+++ ++.|.++... +... .++.
T Consensus 154 --------~~~~l~~l~~~a~~lGl~~lvev-----h~~eEl----~~A~~~g--a~iIGinnr~------l~t~-~~dl 207 (272)
T 3tsm_A 154 --------DDDLAKELEDTAFALGMDALIEV-----HDEAEM----ERALKLS--SRLLGVNNRN------LRSF-EVNL 207 (272)
T ss_dssp --------CHHHHHHHHHHHHHTTCEEEEEE-----CSHHHH----HHHTTSC--CSEEEEECBC------TTTC-CBCT
T ss_pred --------CHHHHHHHHHHHHHcCCeEEEEe-----CCHHHH----HHHHhcC--CCEEEECCCC------CccC-CCCh
Confidence 24556677788999998643222 466654 3445778 8889888331 2221 1243
Q ss_pred HHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeCCccccCC
Q psy8199 880 LEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTD 933 (965)
Q Consensus 880 ~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~ 933 (965)
+...++. ..+|...+.++.+-... .+--..+..+||+++.+|+.++...
T Consensus 208 ~~~~~L~----~~ip~~~~vIaesGI~t-~edv~~l~~~Ga~gvLVG~almr~~ 256 (272)
T 3tsm_A 208 AVSERLA----KMAPSDRLLVGESGIFT-HEDCLRLEKSGIGTFLIGESLMRQH 256 (272)
T ss_dssp HHHHHHH----HHSCTTSEEEEESSCCS-HHHHHHHHTTTCCEEEECHHHHTSS
T ss_pred HHHHHHH----HhCCCCCcEEEECCCCC-HHHHHHHHHcCCCEEEEcHHHcCCc
Confidence 4444333 23564334444333332 3334455889999999999875443
|
| >2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9 | Back alignment and structure |
|---|
Probab=95.20 E-value=0.28 Score=49.90 Aligned_cols=164 Identities=14% Similarity=0.126 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHh--cCcEeEE-----ecCCCCHHHHHHHHHhCCCeEeccCCC---CHHHHhccc--CCCCHHHHHHHHH
Q psy8199 750 DNIENMICEVKK--IGLETCL-----TLGMLNENQAYRLKKVGLDYYNHNLDT---SPKLYGDII--STRDYENRLNTLK 817 (965)
Q Consensus 750 ~~~~~~~~~i~~--~~~~i~~-----~~~~~~~e~l~~Lk~aG~~~i~i~~es---~~~~~~~i~--~~~~~~~~~~~i~ 817 (965)
+-.+|+.+++-. .++.+.. .++......++.||++|+..+ ++.-| -+..|++.. .+-++++-.+.++
T Consensus 79 ~iv~e~~~evlp~v~~iPV~Agv~~~DP~~~~g~~Le~lk~~Gf~Gv-~N~ptvglidG~fr~~LEE~gm~~~~eve~I~ 157 (286)
T 2p10_A 79 QIVVDMAREVLPVVRHTPVLAGVNGTDPFMVMSTFLRELKEIGFAGV-QNFPTVGLIDGLFRQNLEETGMSYAQEVEMIA 157 (286)
T ss_dssp HHHHHHHHHHGGGCSSSCEEEEECTTCTTCCHHHHHHHHHHHTCCEE-EECSCGGGCCHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHhhhccCCCCCEEEEECCcCCCcCHHHHHHHHHHhCCceE-EECCCcccccchhhhhHhhcCCCHHHHHHHHH
Confidence 445677766654 2444433 456667888999999999999 77765 366666553 4668999999999
Q ss_pred HHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeecccccc--CCCCCCCCCCCCH----HHHHHHHHHHHH
Q psy8199 818 NVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQI--KGTPLYGSSILDP----LEFIRTIAVARI 891 (965)
Q Consensus 818 ~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~--~gT~l~~~~~~~~----~~~~~~ia~~R~ 891 (965)
.+++.|+.+....- +.++. +.+.+++ ++.|-+. .|. .| -+......+. +.+.++...+|.
T Consensus 158 ~A~~~gL~Ti~~v~-----~~eeA----~amA~ag--pDiI~~h--~glT~gg-lIG~~~avs~~~~~e~i~~i~~a~~~ 223 (286)
T 2p10_A 158 EAHKLDLLTTPYVF-----SPEDA----VAMAKAG--ADILVCH--MGLTTGG-AIGARSGKSMDDCVSLINECIEAART 223 (286)
T ss_dssp HHHHTTCEECCEEC-----SHHHH----HHHHHHT--CSEEEEE--CSCC----------CCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCeEEEecC-----CHHHH----HHHHHcC--CCEEEEC--CCCCCCC-cccCCCcccHHHhHHHHHHHHHHHHH
Confidence 99999997654322 44444 3456788 8888666 221 11 1122233344 446677788899
Q ss_pred HCCCCceeccccccccchhhHHHHhhc--CccEEeeCCcc
Q psy8199 892 TMPTSRIRMSAGRKEMGETTQAFCFLA--GANSIFYGDKL 929 (965)
Q Consensus 892 ~lp~~~i~i~~~~~~~~~~~~~~~l~~--Gan~~~~g~~~ 929 (965)
.-|+..+-..++......+.+ .++.. |+++++.++.+
T Consensus 224 vnpdvivLc~gGpIstpeDv~-~~l~~t~G~~G~~gASsi 262 (286)
T 2p10_A 224 IRDDIIILSHGGPIANPEDAR-FILDSCQGCHGFYGASSM 262 (286)
T ss_dssp HCSCCEEEEESTTCCSHHHHH-HHHHHCTTCCEEEESHHH
T ss_pred hCCCcEEEecCCCCCCHHHHH-HHHhcCCCccEEEeehhh
Confidence 999985544443545444444 55777 99998877654
|
| >3e49_A Uncharacterized protein DUF849 with A TIM barrel; structural genomics, joint center for structural genomics; HET: MSE; 1.75A {Burkholderia xenovorans LB400} | Back alignment and structure |
|---|
Probab=95.08 E-value=3 Score=43.70 Aligned_cols=236 Identities=12% Similarity=0.088 Sum_probs=137.5
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEeecc--CCCCcccHHHHHHHHHHHHh-cCcEeEEecC----CCCHHHHHHHHHhCC
Q psy8199 714 ILSIESVITAAQKAKSDGATRFCMGAAW--RELKDRDLDNIENMICEVKK-IGLETCLTLG----MLNENQAYRLKKVGL 786 (965)
Q Consensus 714 ~~~~eei~~~~~~~~~~g~~~i~l~~g~--~~~~~~~~~~~~~~~~~i~~-~~~~i~~~~~----~~~~e~l~~Lk~aG~ 786 (965)
..+++||.+.+.+..+.|+.-+++-.=. +.-...+.+.+.+++..|++ ...-|.++.| .-.++.+..+.+...
T Consensus 28 PvTpeEia~~A~~~~~AGAaivHlHvRdp~dG~ps~d~~~~~e~~~~IR~~~d~iI~~TTgg~~~~~~eerla~~~~~~P 107 (311)
T 3e49_A 28 PVTPDEVAQASIGAAEAGAAVIHLHARDPRDGRPTQDPAAFAEFLPRIKSNTDAVINLTTGGSPHMTVEERLRPATHYMP 107 (311)
T ss_dssp CCSHHHHHHHHHHHHHHTCSEEEECEECTTTCCEECCHHHHTTHHHHHHHHCCCEEEECSCSCTTSCHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEEeecCCCCCCcCCCHHHHHHHHHHHHHhCCcEEEECCCCCCCCCHHHHHHHHHhcCC
Confidence 4899999999999999999888885433 12235678899999999986 4544544332 334566777777677
Q ss_pred CeEeccCCC-CHH------HH----------------hcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHH
Q psy8199 787 DYYNHNLDT-SPK------LY----------------GDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAE 843 (965)
Q Consensus 787 ~~i~i~~es-~~~------~~----------------~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~ 843 (965)
+..+++.-| +=. .| ..+. ..+++...+.++.+++.|++... .+| +..++..
T Consensus 108 e~aSln~gs~Nf~~~~~~~~~~~~~~~~e~~~~~~~~~~v~-~n~~~~i~~~~~~~~e~Gi~pE~-e~f----d~g~l~~ 181 (311)
T 3e49_A 108 ELASLNMGSMNFGLYPMLERFKEFAHGWEREHLERSRDLVF-KNTFADIEFILKTCGGNGTRFEF-ECY----DTSHLYN 181 (311)
T ss_dssp SEEEEECSCEECCCGGGGGTCCCCSSHHHHHHHHGGGGCEE-CCCHHHHHHHHHHHHTTTCEEEE-EEC----SHHHHHH
T ss_pred CeeeecCCCcccccccchhhccccccccchhhcccCCCcee-cCCHHHHHHHHHHHHHcCCeeEE-EEE----CHHHHHH
Confidence 777777555 210 00 1122 23788889999999999998764 344 3344444
Q ss_pred HHHHHHhcCCCCCceeeccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccE-
Q psy8199 844 LIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANS- 922 (965)
Q Consensus 844 ~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~- 922 (965)
. ..+.+.+....-+.++..+ |-+ .. .+.+++.+.-++..+...+|.--.-..++.....-.+...++..|-+.
T Consensus 182 ~-~~l~~~Gl~~~p~~~~~vl---Gv~-~g-~~~~~~~L~~~~~~~~~~~~~~~~wsv~~~Gr~~~p~~~~A~~~GGhvR 255 (311)
T 3e49_A 182 L-AHFVDRKLATPPFFVQTVF---GLL-GG-IGPHPEDLAHMRRTADRLFGADYVWSILGAGRHQIPLASIGAAQGANVR 255 (311)
T ss_dssp H-HHHHHTTCSCSSEEEEEEE---SCT-TS-CCCCHHHHHHHHHHHHHHHGGGEEEEEEECGGGHHHHHHHHHTTTCEEE
T ss_pred H-HHHHHcCCCCCCeEEEEEe---cCC-CC-CCCCHHHHHHHHHHHHhhCCCCCeEEEEeeChhhHHHHHHHHHcCCCeE
Confidence 4 4444444211112222111 322 12 245788887777666455553211111111111123445577888883
Q ss_pred EeeCCccccCCCC----C---ChhhHHHHHHcCCCcchhhhHHhhhh
Q psy8199 923 IFYGDKLLTTDNT----K---TNDDSKLLKKLGINTRNIKIKMKNNI 962 (965)
Q Consensus 923 ~~~g~~~~t~~~~----~---~~~~~~~~~~~g~~~~~~~~~~~~~~ 962 (965)
+=.+|++.-..|. | +++..++++++|+.++. .+|.++.|
T Consensus 256 VGlEDnl~~~~G~lA~sNaelV~~~~~i~~~lgr~vAT-p~EAR~iL 301 (311)
T 3e49_A 256 VGLEDSLWIAPGELAETNAAQVRKIRQVIEGLSLEVAS-PAEARTML 301 (311)
T ss_dssp ECTTTCSEEETTEECSCHHHHHHHHHHHHHHTTCCBCC-HHHHHHHH
T ss_pred EcCCcceecCCCCCCCCHHHHHHHHHHHHHHcCCCCCC-HHHHHHHh
Confidence 2244555444442 2 44667888999998876 44555544
|
| >2yci_X 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; 1.78A {Carboxydothermus hydrogenoformans} PDB: 2ycj_A* 2yck_X* | Back alignment and structure |
|---|
Probab=95.01 E-value=0.46 Score=49.02 Aligned_cols=187 Identities=15% Similarity=0.135 Sum_probs=114.0
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHhc-CcEeEEecCCCCHHHHHHHHHh--CCCeEe
Q psy8199 714 ILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI-GLETCLTLGMLNENQAYRLKKV--GLDYYN 790 (965)
Q Consensus 714 ~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~-~~~i~~~~~~~~~e~l~~Lk~a--G~~~i~ 790 (965)
..+.+.+++.+++..+.|+.-+.+.++.. ...+.+++..+++.+++. ++.++ +...+.++++.-.++ |.+.++
T Consensus 30 ~~~~~~a~~~a~~~v~~GAdiIDIg~~s~--~~eE~~rv~~vi~~l~~~~~~pis--IDT~~~~v~~aal~a~~Ga~iIN 105 (271)
T 2yci_X 30 NKDPRPIQEWARRQAEKGAHYLDVNTGPT--ADDPVRVMEWLVKTIQEVVDLPCC--LDSTNPDAIEAGLKVHRGHAMIN 105 (271)
T ss_dssp TTCCHHHHHHHHHHHHTTCSEEEEECCSC--SSCHHHHHHHHHHHHHHHCCCCEE--EECSCHHHHHHHHHHCCSCCEEE
T ss_pred hCCHHHHHHHHHHHHHCCCCEEEEcCCcC--chhHHHHHHHHHHHHHHhCCCeEE--EeCCCHHHHHHHHHhCCCCCEEE
Confidence 35789999999999999999999977652 345688999999999864 55554 455589999999999 987765
Q ss_pred -ccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEE--EecCCCHHHHH----HHHHHHHhcCCCCC--ceeec
Q psy8199 791 -HNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGI--IGLSESRDQRA----ELIFQLANLNPYPE--SVPIN 861 (965)
Q Consensus 791 -i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i--~Gl~et~ed~~----~~l~~l~~l~~~~~--~i~~~ 861 (965)
++.+ .+++.+.+..++++|..+...-+ -|.+.|.+++. +.++.+.+.+ +. .|.+-
T Consensus 106 dvs~~--------------~d~~~~~~~~~a~~~~~vv~m~~d~~G~p~t~~~~~~~l~~~~~~a~~~G--i~~~~IilD 169 (271)
T 2yci_X 106 STSAD--------------QWKMDIFFPMAKKYEAAIIGLTMNEKGVPKDANDRSQLAMELVANADAHG--IPMTELYID 169 (271)
T ss_dssp EECSC--------------HHHHHHHHHHHHHHTCEEEEESCBTTBCCCSHHHHHHHHHHHHHHHHHTT--CCGGGEEEE
T ss_pred ECCCC--------------ccccHHHHHHHHHcCCCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHCC--CCcccEEEe
Confidence 4321 13345667777888886654333 45566755444 4444555555 22 24333
Q ss_pred cccccCCCCCCCCCCCCHHHHHHHHHHHHHHC-CCCceeccccccccch--------hhHHHHhhcCccEEee
Q psy8199 862 NLVQIKGTPLYGSSILDPLEFIRTIAVARITM-PTSRIRMSAGRKEMGE--------TTQAFCFLAGANSIFY 925 (965)
Q Consensus 862 ~~~P~~gT~l~~~~~~~~~~~~~~ia~~R~~l-p~~~i~i~~~~~~~~~--------~~~~~~l~~Gan~~~~ 925 (965)
||.-+-........+.++.+..++..+ |...+-+..++...+. -+...++.+|++..++
T Consensus 170 -----Pg~gfigk~~~~~~~~l~~l~~~~~~~~p~~p~l~G~Snksfg~~~r~~l~~t~~~~a~~~g~~~~iv 237 (271)
T 2yci_X 170 -----PLILPVNVAQEHAVEVLETIRQIKLMANPAPRTVLGLSNVSQKCPDRPLINRTYLVMAMTAGLDAAIM 237 (271)
T ss_dssp -----CCCCCTTTSTHHHHHHHHHHHHHTTSSSSCCEEEEEGGGGGTTCSSHHHHHHHHHHHHHHHTCCEEEE
T ss_pred -----cCCCccccCHHHHHHHHHHHHHHHHhCCCCCCEEEeeCccccCCchHHHHHHHHHHHHHHHhCCcEEE
Confidence 444221111112234555555555555 5555555555543321 2223456688887655
|
| >3e02_A Uncharacterized protein DUF849; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.90A {Burkholderia xenovorans LB400} | Back alignment and structure |
|---|
Probab=94.95 E-value=3.4 Score=43.25 Aligned_cols=236 Identities=11% Similarity=0.108 Sum_probs=138.0
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEeecc--CCCCcccHHHHHHHHHHHHh-cCcEeEEecC----CCCHHHHHHHHHhCC
Q psy8199 714 ILSIESVITAAQKAKSDGATRFCMGAAW--RELKDRDLDNIENMICEVKK-IGLETCLTLG----MLNENQAYRLKKVGL 786 (965)
Q Consensus 714 ~~~~eei~~~~~~~~~~g~~~i~l~~g~--~~~~~~~~~~~~~~~~~i~~-~~~~i~~~~~----~~~~e~l~~Lk~aG~ 786 (965)
..+++||.+.+.+..+.|+.-+++-.=. +.-...+.+.+.+++..|++ ...-|.++.| .-.++.+..+.+...
T Consensus 28 PvTpeEia~~A~~~~~AGAaivHlHvRdp~dG~ps~d~~~~~e~~~~IR~~~d~iI~~TTgg~~~~~~eerla~~~~~~P 107 (311)
T 3e02_A 28 PITPEEIVKEGVAAAEAGAAMLHLHARDPLNGRPSQDPDLFMRFLPQLKERTDAILNITTGGGLGMSLDERLAPARAARP 107 (311)
T ss_dssp CCSHHHHHHHHHHHHHHTCSEEEECEECTTTCCEECCHHHHTTTHHHHHHHCCCEEEECSSCSTTCCHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEEeecCCCCCCcCCCHHHHHHHHHHHHHhCCcEEEECCCCCCCCCHHHHHHHHHhcCC
Confidence 3899999999999999999888885433 12235678899999999986 4554544332 334566777777677
Q ss_pred CeEeccCCC-CHH------HHh----------------cccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHH
Q psy8199 787 DYYNHNLDT-SPK------LYG----------------DIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAE 843 (965)
Q Consensus 787 ~~i~i~~es-~~~------~~~----------------~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~ 843 (965)
+..+++.-| +=. .|+ .+. ..+++...+.++.+++.|++... .+| +..++..
T Consensus 108 e~aSln~gs~Nf~~~~~~~~~~~~~~~~e~~~~~~~~d~v~-~n~~~~i~~~~~~~~e~Gi~pE~-e~f----d~g~l~~ 181 (311)
T 3e02_A 108 EVASMNMGSLNFNISQAAAKFDTFKFDWERPYLAGTRDFIL-SNTFSQIERGMTELGASGTRFEF-ECY----DVGHLYN 181 (311)
T ss_dssp SEEEEECSCEECBCGGGGGGCSCCSSTTHHHHHHHGGGCEE-CCCHHHHHHHHHHHHTTTCEEEE-EEC----SHHHHHH
T ss_pred CeeeecCCCceeccccchhhccccccccchhhcccCCCcee-cCCHHHHHHHHHHHHHcCCeEEE-EEE----cHHHHHH
Confidence 777777555 211 111 111 34678888999999999998764 344 3344444
Q ss_pred HHHHHHhcCCCCCceeeccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccE-
Q psy8199 844 LIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANS- 922 (965)
Q Consensus 844 ~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~- 922 (965)
. ..+.+.+....-+.++..+ |-+ .. .+.+++.+.-++..+...+|.--.-..++.....-.+...++..|-+.
T Consensus 182 ~-~~l~~~Gl~~~p~~~~~vl---Gv~-~g-~~~~~~~L~~~~~~~~~~~~~~~~wsv~~~Gr~~~p~~~~A~~~GGhvR 255 (311)
T 3e02_A 182 L-AHFVDRKLVEPPFFLQCVF---GIL-GG-IGADPENLLHMRTIADRLFGQDYYLSVLAAGRHQMPFVTMSAILGGNVR 255 (311)
T ss_dssp H-HHHHHTTSSCSCEEEEEEE---CCB-TS-CCSCHHHHHHHHHHHHHHHTTSEEEEEEECGGGHHHHHHHHHHTTCEEE
T ss_pred H-HHHHHcCCCCCCeEEEEEe---cCC-CC-CCCCHHHHHHHHHHHHhhCCCCCceEEEeeChhhHHHHHHHHHcCCCeE
Confidence 4 3444444211112222111 322 12 245788888777777555554211111111111123445677888883
Q ss_pred EeeCCccccCCCC----C---ChhhHHHHHHcCCCcchhhhHHhhhh
Q psy8199 923 IFYGDKLLTTDNT----K---TNDDSKLLKKLGINTRNIKIKMKNNI 962 (965)
Q Consensus 923 ~~~g~~~~t~~~~----~---~~~~~~~~~~~g~~~~~~~~~~~~~~ 962 (965)
+=.+|++.-..|. | +++..++++++|+.++. .+|.++.|
T Consensus 256 VGlEDnl~~~~G~lA~sNaelV~~~~~i~~~lgr~vAT-p~EAR~iL 301 (311)
T 3e02_A 256 VGLEDSLYSGKGQLATSNAEQVRKIRRIIEELSLDIAT-PDEARAML 301 (311)
T ss_dssp ESTTTCSEEETTEECSCHHHHHHHHHHHHHHTTCCBCC-HHHHHHHH
T ss_pred EccCcceecCCCCCCCCHHHHHHHHHHHHHHcCCCCCC-HHHHHHHh
Confidence 2244555444442 2 44667888999998876 44555544
|
| >1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=94.94 E-value=0.15 Score=51.57 Aligned_cols=199 Identities=13% Similarity=0.069 Sum_probs=104.7
Q ss_pred CHHHHHHHHHHHHHCCCCEEEE--eeccCCCCcccHHHHHHHHHHHHh-cCcEeEEecCCCC-HHHHHHHHHhCCCeEec
Q psy8199 716 SIESVITAAQKAKSDGATRFCM--GAAWRELKDRDLDNIENMICEVKK-IGLETCLTLGMLN-ENQAYRLKKVGLDYYNH 791 (965)
Q Consensus 716 ~~eei~~~~~~~~~~g~~~i~l--~~g~~~~~~~~~~~~~~~~~~i~~-~~~~i~~~~~~~~-~e~l~~Lk~aG~~~i~i 791 (965)
+...+.++++.+.+.|++.+++ .+|.+.+ . +..-.+.++.+++ ....+.++.-..+ ++.++.+.++|++.+.+
T Consensus 15 D~~~l~~~i~~~~~~Gad~ihldi~DG~fvp-~--~~~g~~~v~~lr~~~~~~~~vhlmv~dp~~~i~~~~~aGadgv~v 91 (230)
T 1tqj_A 15 DFSRLGEEIKAVDEAGADWIHVDVMDGRFVP-N--ITIGPLIVDAIRPLTKKTLDVHLMIVEPEKYVEDFAKAGADIISV 91 (230)
T ss_dssp CGGGHHHHHHHHHHTTCSEEEEEEEBSSSSS-C--BCBCHHHHHHHGGGCCSEEEEEEESSSGGGTHHHHHHHTCSEEEE
T ss_pred CHhHHHHHHHHHHHcCCCEEEEEEEecCCCc-c--hhhhHHHHHHHHhhcCCcEEEEEEccCHHHHHHHHHHcCCCEEEE
Confidence 3456666777777888886544 3443311 1 1122256666665 2333332221112 44679999999999999
Q ss_pred cCC--CCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccccccCCC
Q psy8199 792 NLD--TSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGT 869 (965)
Q Consensus 792 ~~e--s~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT 869 (965)
..| +.+ ...+.++.+++.|+.+.. .+ -+.|..+.++ .+.+ + .+.|.++...|.-|.
T Consensus 92 h~e~~~~~-------------~~~~~~~~i~~~g~~~gv--~~-~p~t~~e~~~---~~~~-~--~D~v~~msv~pg~gg 149 (230)
T 1tqj_A 92 HVEHNASP-------------HLHRTLCQIRELGKKAGA--VL-NPSTPLDFLE---YVLP-V--CDLILIMSVNPGFGG 149 (230)
T ss_dssp ECSTTTCT-------------THHHHHHHHHHTTCEEEE--EE-CTTCCGGGGT---TTGG-G--CSEEEEESSCC----
T ss_pred Ccccccch-------------hHHHHHHHHHHcCCcEEE--EE-eCCCcHHHHH---HHHh-c--CCEEEEEEeccccCC
Confidence 987 432 224667778888887643 33 2345544432 1222 3 677877766554332
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeCCccccCCCCCChhhHHHHHH
Q psy8199 870 PLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLLKK 946 (965)
Q Consensus 870 ~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~~~~ 946 (965)
....+...+.+.++-+.....-.+..+-+..+-.. +....+..+|||.+++|..+.... ++.+..+.+++
T Consensus 150 --q~~~~~~~~~i~~lr~~~~~~~~~~~I~v~GGI~~---~~~~~~~~aGad~vvvGSai~~a~--d~~~~~~~l~~ 219 (230)
T 1tqj_A 150 --QSFIPEVLPKIRALRQMCDERGLDPWIEVDGGLKP---NNTWQVLEAGANAIVAGSAVFNAP--NYAEAIAGVRN 219 (230)
T ss_dssp --CCCCGGGHHHHHHHHHHHHHHTCCCEEEEESSCCT---TTTHHHHHHTCCEEEESHHHHTSS--CHHHHHHHHHT
T ss_pred --ccCcHHHHHHHHHHHHHHHhcCCCCcEEEECCcCH---HHHHHHHHcCCCEEEECHHHHCCC--CHHHHHHHHHH
Confidence 22232233333332222211111344555544332 223345789999999998664332 45666665554
|
| >2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=94.52 E-value=1.8 Score=44.61 Aligned_cols=185 Identities=12% Similarity=0.109 Sum_probs=104.0
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEeeccC-CCCc---------------ccHHHHHHHHHHHHhc--CcEeEEecCCCC---
Q psy8199 716 SIESVITAAQKAKSDGATRFCMGAAWR-ELKD---------------RDLDNIENMICEVKKI--GLETCLTLGMLN--- 774 (965)
Q Consensus 716 ~~eei~~~~~~~~~~g~~~i~l~~g~~-~~~~---------------~~~~~~~~~~~~i~~~--~~~i~~~~~~~~--- 774 (965)
+.++.++.++.+.+.|+..+.+..... |..+ ...+.++++++++++. .+.+.+- +..+
T Consensus 29 ~~~~~~~~~~~l~~~G~D~IElG~P~sdP~adgp~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~Pi~~m-~y~n~v~ 107 (262)
T 2ekc_A 29 DYETSLKAFKEVLKNGTDILEIGFPFSDPVADGPTIQVAHEVALKNGIRFEDVLELSETLRKEFPDIPFLLM-TYYNPIF 107 (262)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTSCEEEE-CCHHHHH
T ss_pred ChHHHHHHHHHHHHcCCCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCCCEEEE-ecCcHHH
Confidence 457778888899999999998843211 1111 1235677888888874 5665542 2222
Q ss_pred ----HHHHHHHHHhCCCeEeccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHh
Q psy8199 775 ----ENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLAN 850 (965)
Q Consensus 775 ----~e~l~~Lk~aG~~~i~i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~ 850 (965)
+..++.++++|++.+.+. +-..++..+.++.++++|+.+. .++ -+.+.++++..+ .+
T Consensus 108 ~~g~~~f~~~~~~aG~dgvii~-------------dl~~ee~~~~~~~~~~~gl~~i--~l~-~p~t~~~rl~~i---a~ 168 (262)
T 2ekc_A 108 RIGLEKFCRLSREKGIDGFIVP-------------DLPPEEAEELKAVMKKYVLSFV--PLG-APTSTRKRIKLI---CE 168 (262)
T ss_dssp HHCHHHHHHHHHHTTCCEEECT-------------TCCHHHHHHHHHHHHHTTCEEC--CEE-CTTCCHHHHHHH---HH
T ss_pred HhhHHHHHHHHHHcCCCEEEEC-------------CCCHHHHHHHHHHHHHcCCcEE--EEe-CCCCCHHHHHHH---HH
Confidence 577889999999987764 2234778888899999998652 222 233444333333 23
Q ss_pred cCCCCCceeeccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeCCccc
Q psy8199 851 LNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLL 930 (965)
Q Consensus 851 l~~~~~~i~~~~~~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~~ 930 (965)
.. ..++........-|+. .+.+..+..+.++..|... +..+-+. -+-...+.. ..+..|||++++|..++
T Consensus 169 ~a--~gfiy~vs~~g~TG~~----~~~~~~~~~~~v~~vr~~~-~~pv~vG--~GI~t~e~~-~~~~~gADgvIVGSai~ 238 (262)
T 2ekc_A 169 AA--DEMTYFVSVTGTTGAR----EKLPYERIKKKVEEYRELC-DKPVVVG--FGVSKKEHA-REIGSFADGVVVGSALV 238 (262)
T ss_dssp HC--SSCEEEESSCC-------------CHHHHHHHHHHHHHC-CSCEEEE--SSCCSHHHH-HHHHTTSSEEEECHHHH
T ss_pred hC--CCCEEEEecCCccCCC----CCcCcccHHHHHHHHHhhc-CCCEEEe--CCCCCHHHH-HHHHcCCCEEEECHHHH
Confidence 33 2333222111122221 1222145667777777766 3333333 222213322 23788999999998664
|
| >3no5_A Uncharacterized protein; PFAM DUF849 domain containing protein, structural genomics, center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=94.52 E-value=3 Score=42.87 Aligned_cols=232 Identities=12% Similarity=0.081 Sum_probs=133.4
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEeeccC-CCCcccHHHHHHHHHHHHhc--CcEeEEecCCC---CHHHHHHHHHhCCC
Q psy8199 714 ILSIESVITAAQKAKSDGATRFCMGAAWR-ELKDRDLDNIENMICEVKKI--GLETCLTLGML---NENQAYRLKKVGLD 787 (965)
Q Consensus 714 ~~~~eei~~~~~~~~~~g~~~i~l~~g~~-~~~~~~~~~~~~~~~~i~~~--~~~i~~~~~~~---~~e~l~~Lk~aG~~ 787 (965)
..+++||.+.+.+..+.|+.-+++--=.. .-...+.+.|.+++..|++. ++-+.++.|.. .++. ..+.+...+
T Consensus 26 PvTpeEia~~A~~~~~AGAaivHlHvRd~~G~~s~d~~~~~e~~~~IR~~~pd~ii~~Ttg~~~~~~e~R-~~~~~~~Pe 104 (275)
T 3no5_A 26 PITVSEQVESTQAAFEAGATLVHLHVRNDDETPTSNPDRFALVLEGIRKHAPGMITQVSTGGRSGAGNER-GAMLSLRPD 104 (275)
T ss_dssp CCSHHHHHHHHHHHHHHTCCEEEECEECTTSCEECCHHHHHHHHHHHHHHSTTCEEEECCCCCTTCCGGG-GTTGGGCCS
T ss_pred CCCHHHHHHHHHHHHHccCcEEEEeecCCCCCcCCCHHHHHHHHHHHHHhCCCeEEEeCCCCCCCCHHHH-hhHhhcCCC
Confidence 38999999999999999998888854321 22345788999999999873 66666655432 1222 223344566
Q ss_pred eEeccCCC-CHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeecccccc
Q psy8199 788 YYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQI 866 (965)
Q Consensus 788 ~i~i~~es-~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~ 866 (965)
..+++.-| + ..+.+. ..+++...+.++.+++.|++... .+| +..++.. +..+.+-+....-+.++..+
T Consensus 105 ~aSl~~gs~N--f~~~v~-~N~~~~~~~~~~~~~e~Gi~pE~-e~f----d~g~l~~-~~~l~~~Gl~~~p~~~~~vl-- 173 (275)
T 3no5_A 105 MASLATGSVN--FPTRVY-DNPPELVDWLAAEMKTYGIKPEV-EAF----DLSMIFQ-AAAMQAAGAIVGPLHIQFVM-- 173 (275)
T ss_dssp EEEEECSCEE--CSSSEE-CCCHHHHHHHHHHHHHTTCEEEE-EES----STHHHHH-HHHHHHHTSSCSSCEEEEEE--
T ss_pred EEEecCcccc--cccccc-cCCHHHHHHHHHHHHHcCCeeEE-EEE----cHHHHHH-HHHHHHCCCCCCCeeEEEEe--
Confidence 77766555 2 001222 34688889999999999998764 444 2333333 33344434211111122111
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccE-EeeCCccccCCCC----C---Ch
Q psy8199 867 KGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANS-IFYGDKLLTTDNT----K---TN 938 (965)
Q Consensus 867 ~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~-~~~g~~~~t~~~~----~---~~ 938 (965)
|-+ .-.+.+++.+.-++..++.+-++....+ ++.....-.+...++..|-+. +=.+|++.-..|. | ++
T Consensus 174 -Gv~--~g~~~~~~~l~~~~~~l~~~~~~~~w~v-~g~Gr~~~p~~~~A~~~GGhvRVGlEDnl~~~~G~~A~sNa~lV~ 249 (275)
T 3no5_A 174 -GIK--NAMPVDREVLEFYVQTLKRLSPDATWTG-AGIGRHQLTMARWSLELGGHCRTGLEDNVRLDKNTLAPSNAALVR 249 (275)
T ss_dssp -CCT--TSCCCCHHHHHHHHHHHHHHCTTCEEEE-EECGGGHHHHHHHHHHHTCEEEESTTTCCBSSSSCBCSCHHHHHH
T ss_pred -CCC--CCCCCCHHHHHHHHHHHHhCCCCCeEEE-EecCHhhHHHHHHHHHhCCCeEEcCCcceeCCCCCCCCCHHHHHH
Confidence 321 1234577777777766655333332111 111111123445677888883 2244655545552 1 34
Q ss_pred hhHHHHHHcCCCcchhhhHHhhhh
Q psy8199 939 DDSKLLKKLGINTRNIKIKMKNNI 962 (965)
Q Consensus 939 ~~~~~~~~~g~~~~~~~~~~~~~~ 962 (965)
+..++++.+|+.++ +.+|.++.|
T Consensus 250 ~~~~i~~~~gr~vA-tp~eAR~iL 272 (275)
T 3no5_A 250 QVAELCEEYGRPVA-TAAQAREIM 272 (275)
T ss_dssp HHHHHHHHTTCCBC-CHHHHHHHT
T ss_pred HHHHHHHHcCCCCC-CHHHHHHHh
Confidence 66778899999988 555666554
|
| >1f6y_A 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; carbon dioxide fixation, cobalamin, methyltatrahydrofolate; 2.20A {Moorella thermoacetica} SCOP: c.1.21.2 PDB: 2e7f_A* 4djd_A* 4dje_A* 4djf_A* 2ogy_A* | Back alignment and structure |
|---|
Probab=94.26 E-value=1.6 Score=44.72 Aligned_cols=193 Identities=13% Similarity=0.071 Sum_probs=116.9
Q ss_pred cCCCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHhcCcEeEEecCCCCHHHHHHHHHh--CCCeEe
Q psy8199 713 KILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKV--GLDYYN 790 (965)
Q Consensus 713 ~~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~e~l~~Lk~a--G~~~i~ 790 (965)
+..+++.+++.+++..+.|+.-+.+.+|..+ ....+.+..++..+++. ..+-+++...+.++++.-.++ |.+.++
T Consensus 20 ~~~~~~~a~~~a~~~v~~GAdiIDIg~g~~~--v~~~ee~~rvv~~i~~~-~~~pisIDT~~~~v~~aAl~a~~Ga~iIN 96 (262)
T 1f6y_A 20 QERDPAPVQEWARRQEEGGARALDLNVGPAV--QDKVSAMEWLVEVTQEV-SNLTLCLDSTNIKAIEAGLKKCKNRAMIN 96 (262)
T ss_dssp HHTCHHHHHHHHHHHHHHTCSEEEEBCC------CHHHHHHHHHHHHHTT-CCSEEEEECSCHHHHHHHHHHCSSCEEEE
T ss_pred hcCCHHHHHHHHHHHHHCCCcEEEECCCCCC--CChHHHHHHHHHHHHHh-CCCeEEEeCCCHHHHHHHHhhCCCCCEEE
Confidence 3468999999999999999999999776433 23456676777766653 234455666789999998888 886553
Q ss_pred ccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEE--EecCCCHHHHHH----HHHHHHhcCCCCCceeecccc
Q psy8199 791 HNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGI--IGLSESRDQRAE----LIFQLANLNPYPESVPINNLV 864 (965)
Q Consensus 791 i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i--~Gl~et~ed~~~----~l~~l~~l~~~~~~i~~~~~~ 864 (965)
.+... .+.+.+.++.++++|..+...-+ -|.++|.++..+ .++.+.+.+--.+.|.+-
T Consensus 97 -----------dvs~~--~d~~~~~~~~~a~~~~~vvlmh~~~~G~p~t~~~~~~~~~~~~~~a~~~Gi~~~~IilD--- 160 (262)
T 1f6y_A 97 -----------STNAE--REKVEKLFPLAVEHGAALIGLTMNKTGIPKDSDTRLAFAMELVAAADEFGLPMEDLYID--- 160 (262)
T ss_dssp -----------EECSC--HHHHHHHHHHHHHTTCEEEEESCCSSCSCSSHHHHHHHHHHHHHHHHHHTCCGGGEEEE---
T ss_pred -----------ECCCC--cccHHHHHHHHHHhCCcEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCcccEEEe---
Confidence 12211 24445677788899987654333 356677776644 444455555101244444
Q ss_pred ccCCCC-CCCCCCCCHHHHHHHHHHHHHHC-CCCceeccccccccch--------hhHHHHhhcCccEEeeCC
Q psy8199 865 QIKGTP-LYGSSILDPLEFIRTIAVARITM-PTSRIRMSAGRKEMGE--------TTQAFCFLAGANSIFYGD 927 (965)
Q Consensus 865 P~~gT~-l~~~~~~~~~~~~~~ia~~R~~l-p~~~i~i~~~~~~~~~--------~~~~~~l~~Gan~~~~g~ 927 (965)
||.- +.. ..-...+.++.+..+|..+ |...+-+..++...+. -+...++..|++...+-.
T Consensus 161 --Pg~g~~g~-~~~~~~~~l~~l~~l~~~~~pg~pvl~G~Srksfg~~~~~~l~~t~~~~a~~~g~~~~iv~~ 230 (262)
T 1f6y_A 161 --PLILPANV-AQDHAPEVLKTLQQIKMLADPAPKTVLGLSNVSQNCQNRPLINRTFLAMAMACGLMSAIADA 230 (262)
T ss_dssp --CCCCCTTT-CTTHHHHHHHHHHHHHTCCSSCCEEEEEGGGGGTTCSSHHHHHHHHHHHHHHTTCCEEEECT
T ss_pred --CCCCcCCC-ChHHHHHHHHHHHHHHHHhCCCCCEEEeecCCcCCCCHHHHHHHHHHHHHHHHhCCeEEECc
Confidence 4541 211 2223457777777777755 6666666666644331 223345678888766544
|
| >1aj0_A DHPS, dihydropteroate synthase; antibiotic, resistance, transferase, folate, biosynthesis; HET: PH2 SAN; 2.00A {Escherichia coli} SCOP: c.1.21.1 PDB: 1aj2_A* 1ajz_A 3tyz_A* 3tyu_A* 3tzf_A* 3tzn_A | Back alignment and structure |
|---|
Probab=94.22 E-value=0.33 Score=50.37 Aligned_cols=137 Identities=13% Similarity=0.138 Sum_probs=86.9
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEeeccCCCC------cccHHHHHHHHHHHHhc-CcEeEEecCCCCHHHHHHHHHhCC
Q psy8199 714 ILSIESVITAAQKAKSDGATRFCMGAAWRELK------DRDLDNIENMICEVKKI-GLETCLTLGMLNENQAYRLKKVGL 786 (965)
Q Consensus 714 ~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~------~~~~~~~~~~~~~i~~~-~~~i~~~~~~~~~e~l~~Lk~aG~ 786 (965)
..+++++++.+++..+.|+.-+-+.+.+..+. ..+++++...++.+++. ++.++ ....+.++++.--++|.
T Consensus 34 ~~~~~~a~~~a~~~v~~GAdiIDIGgestrPga~~v~~~eE~~rv~pvi~~l~~~~~~piS--IDT~~~~va~aAl~aGa 111 (282)
T 1aj0_A 34 HNSLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELQRVIPVVEAIAQRFEVWIS--VDTSKPEVIRESAKVGA 111 (282)
T ss_dssp CTHHHHHHHHHHHHHHHTCSEEEEESSCCSTTCCCCCHHHHHHHHHHHHHHHHHHCCCEEE--EECCCHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhhcCCeEE--EeCCCHHHHHHHHHcCC
Confidence 46799999999999999999999977443222 44577788888888764 55554 44456666666666676
Q ss_pred CeEe-ccCCCCHHHHhcc----------cC---CCC--------------HHHHHHHHHHHHHcCCc---eeeeEEEecC
Q psy8199 787 DYYN-HNLDTSPKLYGDI----------IS---TRD--------------YENRLNTLKNVRNVGIN---ICCGGIIGLS 835 (965)
Q Consensus 787 ~~i~-i~~es~~~~~~~i----------~~---~~~--------------~~~~~~~i~~~~~~Gi~---v~~~~i~Gl~ 835 (965)
+.|+ ++-..+++.++-+ +. +.+ .+...+.++.+.++|++ +...--+|++
T Consensus 112 ~iINdvsg~~d~~~~~~~a~~~~~vVlmh~~G~p~tm~~~~~y~d~~~ev~~~l~~~i~~a~~~Gi~~~~IilDPg~gf~ 191 (282)
T 1aj0_A 112 HIINDIRSLSEPGALEAAAETGLPVCLMHMQGNPKTMQEAPKYDDVFAEVNRYFIEQIARCEQAGIAKEKLLLDPGFGFG 191 (282)
T ss_dssp CEEEETTTTCSTTHHHHHHHHTCCEEEECCSSCTTCCSCCCCCSCHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCTTSS
T ss_pred CEEEECCCCCCHHHHHHHHHhCCeEEEEccCCCCccccccCccchHHHHHHHHHHHHHHHHHHcCCChhhEEEeCCCCcc
Confidence 6664 2211223332110 00 011 45556677778889985 5555445556
Q ss_pred CCHHHHHHHHHHHHhcC
Q psy8199 836 ESRDQRAELIFQLANLN 852 (965)
Q Consensus 836 et~ed~~~~l~~l~~l~ 852 (965)
.+.++-.++++.+.++.
T Consensus 192 k~~~~n~~ll~~l~~~~ 208 (282)
T 1aj0_A 192 KNLSHNYSLLARLAEFH 208 (282)
T ss_dssp CCHHHHHHHHHTGGGGG
T ss_pred cCHHHHHHHHHHHHHHh
Confidence 77777777776666654
|
| >2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A* | Back alignment and structure |
|---|
Probab=94.16 E-value=0.61 Score=58.71 Aligned_cols=211 Identities=10% Similarity=0.031 Sum_probs=138.5
Q ss_pred CCHHHHHHHHHHHHHC--CCCEEEEeeccC-C-----CCcccHHHHHHHHHHHHhcCcEeEEec----CC------CCHH
Q psy8199 715 LSIESVITAAQKAKSD--GATRFCMGAAWR-E-----LKDRDLDNIENMICEVKKIGLETCLTL----GM------LNEN 776 (965)
Q Consensus 715 ~~~eei~~~~~~~~~~--g~~~i~l~~g~~-~-----~~~~~~~~~~~~~~~i~~~~~~i~~~~----~~------~~~e 776 (965)
++.++.++.++.+.+. |+..+-+.+|.. + +...+++++.++.+.+++..+...++. |. ..++
T Consensus 570 ~~~~dkl~ia~~L~~~gv~~~~iE~~gga~f~~~~~f~~~~p~e~l~~~~~~~~~~~~~~l~R~~n~vg~~~~~~~~~~~ 649 (1165)
T 2qf7_A 570 MRTYDIARIAGTYSHALPNLLSLECWGGATFDVSMRFLTEDPWERLALIREGAPNLLLQMLLRGANGVGYTNYPDNVVKY 649 (1165)
T ss_dssp CCHHHHHHHHHHHHHHCTTCSEEEEEETTHHHHHHHHHCCCHHHHHHHHHHHCTTSEEEEEEETTTBTCSSCCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCceEEEeCCCCccHHHHhhcCCCHHHHHHHHHHHchhhHHHHHhccccccccccCCchhHHH
Confidence 7899999999999998 455566644321 1 122345555555555543322222221 22 2357
Q ss_pred HHHHHHHhCCCeEeccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEec-------C-CCHHHHHHHHHHH
Q psy8199 777 QAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL-------S-ESRDQRAELIFQL 848 (965)
Q Consensus 777 ~l~~Lk~aG~~~i~i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl-------~-et~ed~~~~l~~l 848 (965)
.++...++|++.+.+. .+. ...+....+++.+++.|..+...+.+.. + .+.+.+.+.++.+
T Consensus 650 ~i~~a~~~g~d~irif-~sl----------~~~~~~~~~i~~~~~~g~~v~~~i~~~~~~~d~~r~~~~~~~~~~~~~~~ 718 (1165)
T 2qf7_A 650 FVRQAAKGGIDLFRVF-DCL----------NWVENMRVSMDAIAEENKLCEAAICYTGDILNSARPKYDLKYYTNLAVEL 718 (1165)
T ss_dssp HHHHHHHHTCCEEEEE-CTT----------CCGGGGHHHHHHHHHTTCEEEEEEECCSCTTCTTSGGGCHHHHHHHHHHH
T ss_pred HHHHHHhcCcCEEEEE-eeH----------HHHHHHHHHHHHHHhccceEEEEEEEeccccCCCCCCCCHHHHHHHHHHH
Confidence 7999999999998775 331 1245667889999999987776665542 1 4778899999999
Q ss_pred HhcCCCCCceeeccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceecccccc-ccchhhHHHHhhcCccEEe---
Q psy8199 849 ANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRK-EMGETTQAFCFLAGANSIF--- 924 (965)
Q Consensus 849 ~~l~~~~~~i~~~~~~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~-~~~~~~~~~~l~~Gan~~~--- 924 (965)
.+.+ ++.|.+. .| ..-..|.++.+++...|..+ +..+.+-++=. .+.......|+.+||+.+=
T Consensus 719 ~~~G--a~~i~l~------DT----~G~~~P~~~~~lv~~l~~~~-~~~i~~H~Hnd~GlAvAn~laAv~aGa~~vd~ti 785 (1165)
T 2qf7_A 719 EKAG--AHIIAVK------DM----AGLLKPAAAKVLFKALREAT-GLPIHFHTHDTSGIAAATVLAAVEAGVDAVDAAM 785 (1165)
T ss_dssp HHTT--CSEEEEE------ET----TCCCCHHHHHHHHHHHHHHC-SSCEEEEECBTTSCHHHHHHHHHHTTCSEEEEBC
T ss_pred HHcC--CCEEEEe------Cc----cCCcCHHHHHHHHHHHHHhc-CCeEEEEECCCCCHHHHHHHHHHHhCCCEEEecc
Confidence 9999 7776654 44 24467899999999998877 44455554321 2222334568899999542
Q ss_pred e--CCccccCCCCCChhhHHHHHHcCCCcc
Q psy8199 925 Y--GDKLLTTDNTKTNDDSKLLKKLGINTR 952 (965)
Q Consensus 925 ~--g~~~~t~~~~~~~~~~~~~~~~g~~~~ 952 (965)
. |+ .+++.+.++.+.+|+..|+.+.
T Consensus 786 ~GlGe---~~Gn~~le~vv~~L~~~g~~tg 812 (1165)
T 2qf7_A 786 DALSG---NTSQPCLGSIVEALSGSERDPG 812 (1165)
T ss_dssp GGGCS---BTSCCBHHHHHHHHTTSTTCCC
T ss_pred cccCC---CccchhHHHHHHHHHhcCCCcc
Confidence 2 23 3455578899999999888753
|
| >1x7f_A Outer surface protein; structural genomics, unknown function, MCSG, PSI, midwest center for struct genomics; 2.30A {Bacillus cereus atcc 14579} SCOP: b.62.1.2 c.1.8.12 | Back alignment and structure |
|---|
Probab=94.11 E-value=0.37 Score=51.86 Aligned_cols=89 Identities=12% Similarity=0.102 Sum_probs=57.7
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEeeccC-CCCcccHHHHHHHHHHHHhcCcEeEE--ecCCC-----CHHHHHHHHHhCCC
Q psy8199 716 SIESVITAAQKAKSDGATRFCMGAAWR-ELKDRDLDNIENMICEVKKIGLETCL--TLGML-----NENQAYRLKKVGLD 787 (965)
Q Consensus 716 ~~eei~~~~~~~~~~g~~~i~l~~g~~-~~~~~~~~~~~~~~~~i~~~~~~i~~--~~~~~-----~~e~l~~Lk~aG~~ 787 (965)
+.++..+.++.+.+.|+++++..--.. .....-.+++.++++..++.++.+.+ ++..+ +.+.++.|++.|++
T Consensus 39 ~~~~~~~Yi~~a~~~Gf~~IFTSL~~~e~~~~~~~~~~~~l~~~a~~~g~~vi~DVsp~~~~~Lg~s~~dl~~f~~lGi~ 118 (385)
T 1x7f_A 39 TKEKDMAYISAAARHGFSRIFTCLLSVNRPKEEIVAEFKEIINHAKDNNMEVILDVAPAVFDQLGISYSDLSFFAELGAD 118 (385)
T ss_dssp CHHHHHHHHHHHHTTTEEEEEEEECCC--------HHHHHHHHHHHHTTCEEEEEECTTCC------CCCTHHHHHHTCS
T ss_pred CHHHHHHHHHHHHHCCCCEEEccCCccCCChHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHcCCCHHHHHHHHHcCCC
Confidence 467788888889999999987654221 11123357777888888888988866 44444 33678899999999
Q ss_pred eEeccCCCCHHHHhccc
Q psy8199 788 YYNHNLDTSPKLYGDII 804 (965)
Q Consensus 788 ~i~i~~es~~~~~~~i~ 804 (965)
.+-+..--+.+...++.
T Consensus 119 gLRLD~Gf~~~eia~ls 135 (385)
T 1x7f_A 119 GIRLDVGFDGLTEAKMT 135 (385)
T ss_dssp EEEESSCCSSHHHHHHT
T ss_pred EEEEcCCCCHHHHHHHh
Confidence 88877433444444443
|
| >3tr9_A Dihydropteroate synthase; biosynthesis of cofactors, prosthetic groups, and carriers, transferase; HET: PT1; 1.90A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=94.06 E-value=0.89 Score=47.54 Aligned_cols=138 Identities=16% Similarity=0.197 Sum_probs=89.2
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEeeccCCCC----------cccHHHHHHHHHHHHhcCcEeEEecCCCCHHHHHHHHH
Q psy8199 714 ILSIESVITAAQKAKSDGATRFCMGAAWRELK----------DRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKK 783 (965)
Q Consensus 714 ~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~----------~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~e~l~~Lk~ 783 (965)
..+++++++.++++.+.|+.-+-+.+....+. ...++++...++.+++. ..+-+++...+.++++.-.+
T Consensus 45 ~~~~~~al~~A~~~v~~GAdIIDIGgeSTrPga~~~~~~V~~~eE~~Rv~pvI~~l~~~-~~vpISIDT~~~~Va~aAl~ 123 (314)
T 3tr9_A 45 HLDLNSALRTAEKMVDEGADILDIGGEATNPFVDIKTDSPSTQIELDRLLPVIDAIKKR-FPQLISVDTSRPRVMREAVN 123 (314)
T ss_dssp CCSHHHHHHHHHHHHHTTCSEEEEECCCSCTTC-----CHHHHHHHHHHHHHHHHHHHH-CCSEEEEECSCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCcccccCCCCHHHHHHHHHHHHHHHHhh-CCCeEEEeCCCHHHHHHHHH
Confidence 46899999999999999999998865333221 12355577777777763 23445566678888888888
Q ss_pred hCCCeEe-ccCCCCHHHHhcc----------cCC---CC-------------HHHHHHHHHHHHHcCCc---eeeeEEEe
Q psy8199 784 VGLDYYN-HNLDTSPKLYGDI----------IST---RD-------------YENRLNTLKNVRNVGIN---ICCGGIIG 833 (965)
Q Consensus 784 aG~~~i~-i~~es~~~~~~~i----------~~~---~~-------------~~~~~~~i~~~~~~Gi~---v~~~~i~G 833 (965)
+|.+.|+ ++-...++.++-+ +.. .+ .+...+.++.+.++|++ +...--+|
T Consensus 124 aGa~iINDVsg~~~~~m~~v~a~~g~~vVlMh~~G~P~tmq~~~~ydvv~ev~~~l~~~i~~a~~~GI~~~~IilDPG~G 203 (314)
T 3tr9_A 124 TGADMINDQRALQLDDALTTVSALKTPVCLMHFPSETRKPGSTTHFYFLQSVKKELQESIQRCKKAGISEDRIIIDPGFG 203 (314)
T ss_dssp HTCCEEEETTTTCSTTHHHHHHHHTCCEEEECCCCTTCCTTSSCHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCCC
T ss_pred cCCCEEEECCCCCchHHHHHHHHhCCeEEEECCCCCCcccccccccchHHHHHHHHHHHHHHHHHcCCCHhHEEEeCCCC
Confidence 8887764 3332234443321 111 11 23445667778889994 55444468
Q ss_pred ---cCCCHHHHHHHHHHHHhcC
Q psy8199 834 ---LSESRDQRAELIFQLANLN 852 (965)
Q Consensus 834 ---l~et~ed~~~~l~~l~~l~ 852 (965)
++.|.++-.++++.+.++.
T Consensus 204 ~~~F~Kt~~~n~~lL~~l~~l~ 225 (314)
T 3tr9_A 204 QGNYGKNVSENFYLLNKLPEFV 225 (314)
T ss_dssp SGGGCCCHHHHHHHHHTTHHHH
T ss_pred chhhcCCHHHHHHHHHHHHHHh
Confidence 7888887777776666654
|
| >3dxi_A Putative aldolase; TIM barrel, 11107N, PSI2, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Bacteroides vulgatus atcc 8482} | Back alignment and structure |
|---|
Probab=93.99 E-value=0.49 Score=50.09 Aligned_cols=201 Identities=9% Similarity=0.027 Sum_probs=117.7
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEeeccCCCCc-------ccHHHHHHHHHHHHhcCcEeEE--ecCCCCHHHHHHH---H
Q psy8199 715 LSIESVITAAQKAKSDGATRFCMGAAWRELKD-------RDLDNIENMICEVKKIGLETCL--TLGMLNENQAYRL---K 782 (965)
Q Consensus 715 ~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~-------~~~~~~~~~~~~i~~~~~~i~~--~~~~~~~e~l~~L---k 782 (965)
++.++.++.++.+.+.|+..+-+..+..|-.. .+.+. ++.++++ .+..+.. .......+.++.+ +
T Consensus 21 ~~~~~k~~ia~~L~~aGv~~IEvg~~~~p~~~f~~~~~~~~~e~-l~~i~~~--~~~~~~~L~r~~~~~~~dv~~~~~a~ 97 (320)
T 3dxi_A 21 FNSKIVDAYILAMNELPIDYLEVGYRNKPSKEYMGKFGYTPVSV-LKHLRNI--STKKIAIMLNEKNTTPEDLNHLLLPI 97 (320)
T ss_dssp CCHHHHHHHHHHHHTTTCCEEEEEECCSCCSSCCCHHHHCCHHH-HHHHHHH--CCSEEEEEEEGGGCCGGGHHHHHGGG
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEecccCCccccccccccChHHH-HHHHhhc--cCCeEEEEecCCCCChhhHHHHHHhh
Confidence 88999999999999999999988754322110 11222 2333333 3444433 2221222334444 4
Q ss_pred HhCCCeEeccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCC-CHHHHHHHHHHHHhcCCCCCceeec
Q psy8199 783 KVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSE-SRDQRAELIFQLANLNPYPESVPIN 861 (965)
Q Consensus 783 ~aG~~~i~i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~e-t~ed~~~~l~~l~~l~~~~~~i~~~ 861 (965)
++|++.+.+... .++.+...+.++.+++.|+.+...+.+.-+. +.++.+..+..+ +.+ .+.|.+.
T Consensus 98 ~~Gvd~~ri~~~-----------~~nle~~~~~v~~ak~~G~~v~~~~~~~~~~~~~~~~l~~~~~~-~~G--~~~i~l~ 163 (320)
T 3dxi_A 98 IGLVDMIRIAID-----------PQNIDRAIVLAKAIKTMGFEVGFNVMYMSKWAEMNGFLSKLKAI-DKI--ADLFCMV 163 (320)
T ss_dssp TTTCSEEEEEEC-----------GGGHHHHHHHHHHHHTTTCEEEEEECCTTTGGGSTTSGGGGGGG-TTT--CSEEEEE
T ss_pred hcCCCEEEEEec-----------HHHHHHHHHHHHHHHHCCCEEEEEEEeCCCCCCHHHHHHHHHHh-hCC--CCEEEEC
Confidence 478887766631 1237888999999999999987777653332 222233333221 234 5555433
Q ss_pred cccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceecccccc-ccchhhHHHHhhcCccEEe-----eCCccccCCCC
Q psy8199 862 NLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRK-EMGETTQAFCFLAGANSIF-----YGDKLLTTDNT 935 (965)
Q Consensus 862 ~~~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~-~~~~~~~~~~l~~Gan~~~-----~g~~~~t~~~~ 935 (965)
+| .....|.++.+++...|..+| ..+.+-+.-. .+.......|+.+||+.+= .|+ .+++.
T Consensus 164 ------Dt----~G~~~P~~~~~lv~~l~~~~~-~~i~~H~Hn~~G~a~an~laA~~aGa~~vd~si~GlG~---~~GN~ 229 (320)
T 3dxi_A 164 ------DS----FGGITPKEVKNLLKEVRKYTH-VPVGFHGHDNLQLGLINSITAIDDGIDFIDATITGMGR---GAGNL 229 (320)
T ss_dssp ------CT----TSCCCHHHHHHHHHHHHHHCC-SCEEEECBCTTSCHHHHHHHHHHTTCSEEEEBGGGCSS---TTCBC
T ss_pred ------cc----cCCCCHHHHHHHHHHHHHhCC-CeEEEEeCCCCccHHHHHHHHHHhCCCEEEEeccccCC---cccch
Confidence 44 233578999999999998886 3344443221 1222334568899999542 122 34445
Q ss_pred CChhhHHHHHH
Q psy8199 936 KTNDDSKLLKK 946 (965)
Q Consensus 936 ~~~~~~~~~~~ 946 (965)
..++...+|+.
T Consensus 230 ~~E~lv~~L~~ 240 (320)
T 3dxi_A 230 KMELLLTYLNK 240 (320)
T ss_dssp BHHHHHHHHHH
T ss_pred hHHHHHHHHHh
Confidence 67888888887
|
| >1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=93.91 E-value=2.1 Score=43.69 Aligned_cols=206 Identities=13% Similarity=0.083 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHh-cCcEeEEecCCCCHHHHHHHHHhCCCeEeccCCCCH
Q psy8199 719 SVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSP 797 (965)
Q Consensus 719 ei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~-~~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~~es~~ 797 (965)
+..+.++.+.+.|+..+.+.+.... ........+.++.+++ .++.+....+..+.+.++.+.++|++.+.++-..
T Consensus 32 d~~~~a~~~~~~Gad~i~v~d~~~~--~~~~~~~~~~i~~i~~~~~iPvi~~Ggi~~~~~~~~~~~~Gad~V~lg~~~-- 107 (252)
T 1ka9_F 32 DPVEAARAYDEAGADELVFLDISAT--HEERAILLDVVARVAERVFIPLTVGGGVRSLEDARKLLLSGADKVSVNSAA-- 107 (252)
T ss_dssp CHHHHHHHHHHHTCSCEEEEECCSS--TTCHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHHTCSEEEECHHH--
T ss_pred CHHHHHHHHHHcCCCEEEEEcCCcc--ccCccccHHHHHHHHHhCCCCEEEECCcCCHHHHHHHHHcCCCEEEEChHH--
Confidence 3444555666779998888754321 1234456677888876 5888999999999999999999999999998533
Q ss_pred HHHhcccCCCCHHHHHHHHHHHHHcCCceeeeE--------EEecCCC---HHHHHHHHHHHHhcCCCCCceeecccccc
Q psy8199 798 KLYGDIISTRDYENRLNTLKNVRNVGINICCGG--------IIGLSES---RDQRAELIFQLANLNPYPESVPINNLVQI 866 (965)
Q Consensus 798 ~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~--------i~Gl~et---~ed~~~~l~~l~~l~~~~~~i~~~~~~P~ 866 (965)
+.. ++...++.+.....-+.+.... +.=.|.. ..+..+.++.+.+++ ...+.++... .
T Consensus 108 --l~~------p~~~~~~~~~~~~~~i~~~~~~~~~~g~~~v~~~g~~~~~~~~~~e~~~~~~~~G--~~~i~~~~~~-~ 176 (252)
T 1ka9_F 108 --VRR------PELIRELADHFGAQAVVLAIDARWRGDFPEVHVAGGRVPTGLHAVEWAVKGVELG--AGEILLTSMD-R 176 (252)
T ss_dssp --HHC------THHHHHHHHHHCGGGEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHHHHHT--CCEEEEEETT-T
T ss_pred --HhC------cHHHHHHHHHcCCCcEEEEEEEecCCCCEEEEECCCccccCCcHHHHHHHHHHcC--CCEEEEeccc-C
Confidence 111 1122223333221112222221 1112321 123455566666777 6655544211 1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeCCccccCCCCCChhhHHHHHH
Q psy8199 867 KGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLLKK 946 (965)
Q Consensus 867 ~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~~~~ 946 (965)
.|+. ..++.+ .++..+... +..+-...+-.. ..+... ++.+||+++++|..++.. ..++.+..+.+++
T Consensus 177 ~g~~----~g~~~~----~i~~l~~~~-~ipvia~GGI~~-~~d~~~-~~~~Gadgv~vgsal~~~-~~~~~~~~~~l~~ 244 (252)
T 1ka9_F 177 DGTK----EGYDLR----LTRMVAEAV-GVPVIASGGAGR-MEHFLE-AFQAGAEAALAASVFHFG-EIPIPKLKRYLAE 244 (252)
T ss_dssp TTTC----SCCCHH----HHHHHHHHC-SSCEEEESCCCS-HHHHHH-HHHTTCSEEEESHHHHTT-SSCHHHHHHHHHH
T ss_pred CCCc----CCCCHH----HHHHHHHHc-CCCEEEeCCCCC-HHHHHH-HHHCCCHHHHHHHHHHcC-CCCHHHHHHHHHH
Confidence 2321 112322 222333333 222323322222 134443 457899999999976444 3368888888888
Q ss_pred cCCCc
Q psy8199 947 LGINT 951 (965)
Q Consensus 947 ~g~~~ 951 (965)
.|+..
T Consensus 245 ~~~~~ 249 (252)
T 1ka9_F 245 KGVHV 249 (252)
T ss_dssp TTCCB
T ss_pred CCCCc
Confidence 88754
|
| >2dqw_A Dihydropteroate synthase; dimer, structural genomics; 1.65A {Thermus thermophilus} PDB: 2dza_A* 2dzb_A* | Back alignment and structure |
|---|
Probab=93.88 E-value=0.39 Score=49.96 Aligned_cols=137 Identities=12% Similarity=0.132 Sum_probs=76.2
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEeeccCCC------CcccHHHHHHHHHHHHhcCcEeEEecCCCCHHHHHHHHHhCCC
Q psy8199 714 ILSIESVITAAQKAKSDGATRFCMGAAWREL------KDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLD 787 (965)
Q Consensus 714 ~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~------~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~e~l~~Lk~aG~~ 787 (965)
+.+.+.+++.++++.+.|+.-+-+.+....+ ....++++...++.+++.++.++ +...+.++++.--++|.+
T Consensus 48 ~~~~~~a~~~a~~~v~~GAdIIDIGgeSTrPga~~v~~~eE~~Rv~pvI~~l~~~~vpiS--IDT~~~~Va~aAl~aGa~ 125 (294)
T 2dqw_A 48 YLDPERALERAREMVAEGADILDLGAESTRPGAAPVPVEEEKRRLLPVLEAVLSLGVPVS--VDTRKPEVAEEALKLGAH 125 (294)
T ss_dssp -----CCHHHHHHHHHHTCSEEEEECC-----------CCHHHHHHHHHHHHHTTCSCEE--EECSCHHHHHHHHHHTCS
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhCCCeEE--EECCCHHHHHHHHHhCCC
Confidence 4688999999999999999999997633221 24567888999998886554443 333445555554445544
Q ss_pred -----------------------eEeccCC-CCHHHHhcccC-CC----CHHHHHHHHHHHHHcCCc-eeeeEEEecCCC
Q psy8199 788 -----------------------YYNHNLD-TSPKLYGDIIS-TR----DYENRLNTLKNVRNVGIN-ICCGGIIGLSES 837 (965)
Q Consensus 788 -----------------------~i~i~~e-s~~~~~~~i~~-~~----~~~~~~~~i~~~~~~Gi~-v~~~~i~Gl~et 837 (965)
.+.+-.+ ..++.....-. .. -.+...+.++.+.++|++ +...--+|++.|
T Consensus 126 iINdVsg~~d~~m~~v~a~~~~~vVlmh~~eG~p~tm~~~~~y~dv~~ev~~~l~~~i~~a~~~Gi~~IilDPG~Gf~kt 205 (294)
T 2dqw_A 126 LLNDVTGLRDERMVALAARHGVAAVVMHMPVPDPATMMAHARYRDVVAEVKAFLEAQARRALSAGVPQVVLDPGFGFGKL 205 (294)
T ss_dssp EEECSSCSCCHHHHHHHHHHTCEEEEECCSSSCTTTGGGGCCCSSHHHHHHHHHHHHHHHHHHTTCSCEEEECCTTSSCC
T ss_pred EEEECCCCCChHHHHHHHHhCCCEEEEcCCCCCCccccccCccccHHHHHHHHHHHHHHHHHHCCCCcEEEcCCCCcccC
Confidence 4433332 21111110000 00 023445667778889996 222222244588
Q ss_pred HHHHHHHHHHHHhcC
Q psy8199 838 RDQRAELIFQLANLN 852 (965)
Q Consensus 838 ~ed~~~~l~~l~~l~ 852 (965)
.++-.++++.++++.
T Consensus 206 ~~~n~~ll~~l~~~~ 220 (294)
T 2dqw_A 206 LEHNLALLRRLDEIV 220 (294)
T ss_dssp HHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 887777777777765
|
| >3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Probab=93.83 E-value=0.62 Score=47.90 Aligned_cols=185 Identities=14% Similarity=0.058 Sum_probs=105.1
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEeecc-CCCCcc---------------cHHHHHHHHHHHHhc--CcEeEEecCC-----
Q psy8199 716 SIESVITAAQKAKSDGATRFCMGAAW-RELKDR---------------DLDNIENMICEVKKI--GLETCLTLGM----- 772 (965)
Q Consensus 716 ~~eei~~~~~~~~~~g~~~i~l~~g~-~~~~~~---------------~~~~~~~~~~~i~~~--~~~i~~~~~~----- 772 (965)
+.+...+.++.+.+.|++-+.+.-.. +|..+. .++.+.++++++++. .+.+.+-...
T Consensus 30 ~~~~~~~~~~~l~~~GaD~iElgiPfSDP~aDGp~Iq~a~~~AL~~G~~~~~~~~~v~~ir~~~~~~Pivlm~Y~npv~~ 109 (267)
T 3vnd_A 30 SPELSLKIIQTLVDNGADALELGFPFSDPLADGPVIQGANLRSLAAGTTSSDCFDIITKVRAQHPDMPIGLLLYANLVFA 109 (267)
T ss_dssp CHHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCCEEEEECHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecCcHHHH
Confidence 46778888888889999988886321 122222 134667888888863 4444332110
Q ss_pred -CCHHHHHHHHHhCCCeEeccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhc
Q psy8199 773 -LNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANL 851 (965)
Q Consensus 773 -~~~e~l~~Lk~aG~~~i~i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l 851 (965)
-.+..++.++++|++.+.+. +-.+++..+..+.++++|+... +++ -+.|.++++. .+.+.
T Consensus 110 ~g~e~f~~~~~~aGvdgvii~-------------Dlp~ee~~~~~~~~~~~gl~~i--~li-aP~t~~eri~---~i~~~ 170 (267)
T 3vnd_A 110 NGIDEFYTKAQAAGVDSVLIA-------------DVPVEESAPFSKAAKAHGIAPI--FIA-PPNADADTLK---MVSEQ 170 (267)
T ss_dssp HCHHHHHHHHHHHTCCEEEET-------------TSCGGGCHHHHHHHHHTTCEEE--CEE-CTTCCHHHHH---HHHHH
T ss_pred hhHHHHHHHHHHcCCCEEEeC-------------CCCHhhHHHHHHHHHHcCCeEE--EEE-CCCCCHHHHH---HHHHh
Confidence 12778999999999998775 2223456777888999999752 233 3455444433 33444
Q ss_pred CCCCCceeeccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeCCcc
Q psy8199 852 NPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKL 929 (965)
Q Consensus 852 ~~~~~~i~~~~~~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~ 929 (965)
. ..++.+....+.-|+. ...+ .+....+...|...+ ..+-+. -+--..+....++.+|||++++|..+
T Consensus 171 ~--~gfvY~vS~~GvTG~~--~~~~---~~~~~~v~~vr~~~~-~pv~vG--fGI~~~e~~~~~~~~gADgvVVGSai 238 (267)
T 3vnd_A 171 G--EGYTYLLSRAGVTGTE--SKAG---EPIENILTQLAEFNA-PPPLLG--FGIAEPEQVRAAIKAGAAGAISGSAV 238 (267)
T ss_dssp C--CSCEEESCCCCCC-------------CHHHHHHHHHTTTC-CCEEEC--SSCCSHHHHHHHHHTTCSEEEECHHH
T ss_pred C--CCcEEEEecCCCCCCc--cCCc---HHHHHHHHHHHHhcC-CCEEEE--CCcCCHHHHHHHHHcCCCEEEECHHH
Confidence 4 3455554344433432 1111 234555555566542 223333 32212333344688999999999865
|
| >2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A* | Back alignment and structure |
|---|
Probab=93.72 E-value=2.8 Score=41.49 Aligned_cols=166 Identities=12% Similarity=0.140 Sum_probs=97.8
Q ss_pred cCCCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHh-cCcEeEE-ecCCCCHHHHHHHHHhCCCeEe
Q psy8199 713 KILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETCL-TLGMLNENQAYRLKKVGLDYYN 790 (965)
Q Consensus 713 ~~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~-~~~~i~~-~~~~~~~e~l~~Lk~aG~~~i~ 790 (965)
+..++++..+.++.+.+.|+..+.+.... + .. .+.++.+++ .+..+.+ -.+..+.+.++...++|++.+.
T Consensus 14 ~~~d~~~~~~~~~~~~~~G~~~i~l~~~~-~---~~----~~~i~~i~~~~~~~l~vg~g~~~~~~~i~~a~~~Gad~V~ 85 (212)
T 2v82_A 14 RGITPDEALAHVGAVIDAGFDAVEIPLNS-P---QW----EQSIPAIVDAYGDKALIGAGTVLKPEQVDALARMGCQLIV 85 (212)
T ss_dssp TTCCHHHHHHHHHHHHHHTCCEEEEETTS-T---TH----HHHHHHHHHHHTTTSEEEEECCCSHHHHHHHHHTTCCEEE
T ss_pred eCCCHHHHHHHHHHHHHCCCCEEEEeCCC-h---hH----HHHHHHHHHhCCCCeEEEeccccCHHHHHHHHHcCCCEEE
Confidence 34578999999999999999999885442 1 11 234444443 3433333 1344578899999999999997
Q ss_pred ccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCC
Q psy8199 791 HNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTP 870 (965)
Q Consensus 791 i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~ 870 (965)
++.. + .+.++.+++.|.++. +| -.|.++.. ...+.+ .+.+.++ | |.
T Consensus 86 ~~~~-~----------------~~~~~~~~~~g~~~~----~g-~~t~~e~~----~a~~~G--~d~v~v~---~---t~ 131 (212)
T 2v82_A 86 TPNI-H----------------SEVIRRAVGYGMTVC----PG-CATATEAF----TALEAG--AQALKIF---P---SS 131 (212)
T ss_dssp CSSC-C----------------HHHHHHHHHTTCEEE----CE-ECSHHHHH----HHHHTT--CSEEEET---T---HH
T ss_pred eCCC-C----------------HHHHHHHHHcCCCEE----ee-cCCHHHHH----HHHHCC--CCEEEEe---c---CC
Confidence 5421 1 234566777887653 34 35666643 334567 7777652 2 11
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCC-CCceeccccccccchhhHHHHhhcCccEEeeCCccccC
Q psy8199 871 LYGSSILDPLEFIRTIAVARITMP-TSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTT 932 (965)
Q Consensus 871 l~~~~~~~~~~~~~~ia~~R~~lp-~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~~t~ 932 (965)
+.+ .+.+...+..++ +..+-..++-. ..+.. ..+.+||+++.+|..+...
T Consensus 132 -----~~g----~~~~~~l~~~~~~~ipvia~GGI~--~~~i~-~~~~~Ga~gv~vGsai~~~ 182 (212)
T 2v82_A 132 -----AFG----PQYIKALKAVLPSDIAVFAVGGVT--PENLA-QWIDAGCAGAGLGSDLYRA 182 (212)
T ss_dssp -----HHC----HHHHHHHHTTSCTTCEEEEESSCC--TTTHH-HHHHHTCSEEEECTTTCCT
T ss_pred -----CCC----HHHHHHHHHhccCCCeEEEeCCCC--HHHHH-HHHHcCCCEEEEChHHhCC
Confidence 112 233333444555 34344444332 23333 4477999999999876443
|
| >3c6c_A 3-keto-5-aminohexanoate cleavage enzyme; DUF849 family protein, TIM beta/alpha-barrel fold, structura genomics; HET: MSE; 1.72A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=93.48 E-value=4.4 Score=42.33 Aligned_cols=230 Identities=13% Similarity=0.071 Sum_probs=134.7
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEeecc--CCCCcccHHHHHHHHHHHHhc--CcEeEEecC-----------C------
Q psy8199 714 ILSIESVITAAQKAKSDGATRFCMGAAW--RELKDRDLDNIENMICEVKKI--GLETCLTLG-----------M------ 772 (965)
Q Consensus 714 ~~~~eei~~~~~~~~~~g~~~i~l~~g~--~~~~~~~~~~~~~~~~~i~~~--~~~i~~~~~-----------~------ 772 (965)
..+++||.+.+.+..+.|+.-+++-.=. +.-...+.+.|.+++..|++. ++-+.++.| .
T Consensus 44 PvTpeEIa~~A~~a~~AGAaivHlHvRd~~~G~ps~d~~~y~e~~~~IR~~~~d~ii~~TTg~gg~~~g~~~~p~~~~~~ 123 (316)
T 3c6c_A 44 PITPAQIADACVEAAKAGASVAHIHVRDPKTGGGSRDPVLFKEVVDRVRSSGTDIVLNLTCGLGAFLLPDPEDESKALPE 123 (316)
T ss_dssp CCSHHHHHHHHHHHHHHTCSEEEECEECTTTCCEECCHHHHHHHHHHHHTTTCCCEEEEECCCSEEECEETTEEEEECTT
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEEeecCCCCCCcCCCHHHHHHHHHHHHHHCCCeEEEeCCCccccccCcccCccccccc
Confidence 3899999999999999999988885433 123456789999999999964 666666555 1
Q ss_pred ----CCHHHHHHHHHhCCCeEeccCCC-CH--HHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHH
Q psy8199 773 ----LNENQAYRLKKVGLDYYNHNLDT-SP--KLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELI 845 (965)
Q Consensus 773 ----~~~e~l~~Lk~aG~~~i~i~~es-~~--~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l 845 (965)
..++.+..+.+...+..+++.-| +- ..-..+. ..+++...+..+.+++.|++... .+| +..++.. +
T Consensus 124 ~~l~~~eeR~~~~~~~~Pe~aSl~~Gs~Nf~~~~~~~v~-~n~~~~i~~~~~~~~e~Gv~pE~-e~f----d~g~l~~-~ 196 (316)
T 3c6c_A 124 SDVVPVAERVKHLEDCLPEIASLDITTGNQVEGKLEFVY-LNTTRTLRAMARRFQELGIKPEL-EVF----SPGDILF-G 196 (316)
T ss_dssp CEECCHHHHTHHHHHHCCSEEEEECCCEEEEETTEEEEE-CCCHHHHHHHHHHHHHHTCEEEE-EES----SHHHHHH-H
T ss_pred cccCCHHHHHHHHHhcCCCeEEeccccccccCCCCceee-cCCHHHHHHHHHHHHHcCCeEEE-EEE----CHHHHHH-H
Confidence 24556666666678888777766 41 1101122 46788999999999999998764 344 3333433 4
Q ss_pred HHHHhcCC--CCCceeeccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEE
Q psy8199 846 FQLANLNP--YPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSI 923 (965)
Q Consensus 846 ~~l~~l~~--~~~~i~~~~~~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~ 923 (965)
..+.+-+. .+..+.+. + |-+. . .+.+++.+.-++.. +|.--.-..++.....-.+...++..|-+.-
T Consensus 197 ~~l~~~Gll~~p~~~~~v--l---Gv~~-g-~p~~p~~L~~~~~~----lp~~~~wsv~g~Gr~q~p~~~~A~~~GGhvR 265 (316)
T 3c6c_A 197 KQLIEEGLIDGVPLFQMV--L---GVLW-G-APASTETMIYQRNL----IPANAQWAAFGIGRDQMPMMAQAALLGGNVR 265 (316)
T ss_dssp HHHHHTTCSCSSCEEEEE--C---SCTT-S-CCSCHHHHHHHHTT----SCTTSEEEEECCGGGHHHHHHHHHHHTCBEE
T ss_pred HHHHHcCCCCCCceEEEE--E---ecCC-C-CCCCHHHHHHHHHh----cCCCCeEEEEecCcchHHHHHHHHHcCCCeE
Confidence 44444442 12222221 1 3211 1 33567776655432 4432121111112111124445777888742
Q ss_pred -eeCCccccCCCC---C---ChhhHHHHHHcCCCcchhhhHHhhhh
Q psy8199 924 -FYGDKLLTTDNT---K---TNDDSKLLKKLGINTRNIKIKMKNNI 962 (965)
Q Consensus 924 -~~g~~~~t~~~~---~---~~~~~~~~~~~g~~~~~~~~~~~~~~ 962 (965)
=.++++.-..|. | +++..++++.+|+.++. .+|.++.|
T Consensus 266 VGlEDnl~~~~G~~AsNa~lV~~a~~i~~~lGr~vAT-p~eAR~iL 310 (316)
T 3c6c_A 266 VGLEDNLYLSRGVFATNGQLVERARTVIEHLGMSVAT-PDEARDIM 310 (316)
T ss_dssp ESTTTCCEEETTEECCHHHHHHHHHHHHHHTTCEECC-HHHHHHHH
T ss_pred EccccccCCCCCcCCCHHHHHHHHHHHHHHcCCCCCC-HHHHHHHh
Confidence 234554433331 2 44667778899998754 56666554
|
| >2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A* | Back alignment and structure |
|---|
Probab=93.36 E-value=0.94 Score=46.11 Aligned_cols=187 Identities=12% Similarity=0.096 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHh-cCcEeEEecCCCCHHHHHHHHHhCCCeEeccCCCCH
Q psy8199 719 SVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSP 797 (965)
Q Consensus 719 ei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~-~~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~~es~~ 797 (965)
+..+.++.+.+.|+..+++.+-....... ... +.++.+++ .++.+..+.+..+.+.++.+.++|++.+.++.+.
T Consensus 32 d~~~~a~~~~~~Gad~i~v~~~d~~~~~~--~~~-~~i~~i~~~~~ipv~v~ggi~~~~~~~~~l~~Gad~V~lg~~~-- 106 (244)
T 2y88_A 32 SAVDAALGWQRDGAEWIHLVDLDAAFGRG--SNH-ELLAEVVGKLDVQVELSGGIRDDESLAAALATGCARVNVGTAA-- 106 (244)
T ss_dssp EHHHHHHHHHHTTCSEEEEEEHHHHTTSC--CCH-HHHHHHHHHCSSEEEEESSCCSHHHHHHHHHTTCSEEEECHHH--
T ss_pred CHHHHHHHHHHcCCCEEEEEcCcccccCC--ChH-HHHHHHHHhcCCcEEEECCCCCHHHHHHHHHcCCCEEEECchH--
Confidence 44555667778899999997521111011 112 66666665 6889999999999999999999999999998744
Q ss_pred HHHhcccCCCCHHHHHHHHHHHHH-cCCceeee------EEEecC--CCHHHHHHHHHHHHhcCCCCCceeeccccccCC
Q psy8199 798 KLYGDIISTRDYENRLNTLKNVRN-VGINICCG------GIIGLS--ESRDQRAELIFQLANLNPYPESVPINNLVQIKG 868 (965)
Q Consensus 798 ~~~~~i~~~~~~~~~~~~i~~~~~-~Gi~v~~~------~i~Gl~--et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~g 868 (965)
+.. ++...+.++.+.+ ..+.+.+. -+.-.| ++..+..+.++.+.+.+ .+.+.++...+ .+
T Consensus 107 --l~~------p~~~~~~~~~~g~~~~~~ld~~~~~~~~~v~~~g~~~~~~~~~e~~~~~~~~G--~~~i~~~~~~~-~~ 175 (244)
T 2y88_A 107 --LEN------PQWCARVIGEHGDQVAVGLDVQIIDGEHRLRGRGWETDGGDLWDVLERLDSEG--CSRFVVTDITK-DG 175 (244)
T ss_dssp --HHC------HHHHHHHHHHHGGGEEEEEEEEEETTEEEEEEGGGTEEEEEHHHHHHHHHHTT--CCCEEEEETTT-TT
T ss_pred --hhC------hHHHHHHHHHcCCCEEEEEeccccCCCCEEEECCccCCCCCHHHHHHHHHhCC--CCEEEEEecCC-cc
Confidence 111 2233333333321 11112211 111112 11114566667777788 77776664333 12
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhc---CccEEeeCCccccC
Q psy8199 869 TPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLA---GANSIFYGDKLLTT 932 (965)
Q Consensus 869 T~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~---Gan~~~~g~~~~t~ 932 (965)
+ ...+..+.+.++. ... +..+-..++-.. ..+.. .++.+ ||+++++|..++..
T Consensus 176 ~----~~g~~~~~~~~l~----~~~-~ipvia~GGI~~-~~d~~-~~~~~~~~Gad~v~vG~al~~~ 231 (244)
T 2y88_A 176 T----LGGPNLDLLAGVA----DRT-DAPVIASGGVSS-LDDLR-AIATLTHRGVEGAIVGKALYAR 231 (244)
T ss_dssp T----TSCCCHHHHHHHH----TTC-SSCEEEESCCCS-HHHHH-HHHTTGGGTEEEEEECHHHHTT
T ss_pred c----cCCCCHHHHHHHH----HhC-CCCEEEECCCCC-HHHHH-HHHhhccCCCCEEEEcHHHHCC
Confidence 2 1122333333322 112 222323322221 13333 44667 99999999876543
|
| >2y5s_A DHPS, dihydropteroate synthase; transferase, folate biosynthesis; HET: 78H; 1.95A {Burkholderia cenocepacia} PDB: 2y5j_A* | Back alignment and structure |
|---|
Probab=93.34 E-value=0.48 Score=49.39 Aligned_cols=137 Identities=15% Similarity=0.238 Sum_probs=84.8
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEeeccCCCC------cccHHHHHHHHHHHHhcCcEeEEecCCCCHHHHHHHHHhCCC
Q psy8199 714 ILSIESVITAAQKAKSDGATRFCMGAAWRELK------DRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLD 787 (965)
Q Consensus 714 ~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~------~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~e~l~~Lk~aG~~ 787 (965)
+.+.+.+++.++++.+.|+.-+-+.+....+. ...++++...++.+++.++. +++...+.++++.-.++|.+
T Consensus 42 ~~~~~~a~~~a~~~v~~GAdiIDIGgeSTrPga~~v~~~eE~~Rv~pvi~~l~~~~vp--iSIDT~~~~Va~aAl~aGa~ 119 (294)
T 2y5s_A 42 FLARDDALRRAERMIAEGADLLDIGGESTRPGAPPVPLDEELARVIPLVEALRPLNVP--LSIDTYKPAVMRAALAAGAD 119 (294)
T ss_dssp --CTTHHHHHHHHHHHTTCSEEEEESSCCSTTCCCCCHHHHHHHHHHHHHHHGGGCSC--EEEECCCHHHHHHHHHHTCS
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHhhCCCe--EEEECCCHHHHHHHHHcCCC
Confidence 46889999999999999999999976332211 34477788888888765444 45566788888888888887
Q ss_pred eEe-ccCCCCHHHHhcccCC-------------CC---------------HHHHHHHHHHHHHcCCc---eeeeEEEecC
Q psy8199 788 YYN-HNLDTSPKLYGDIIST-------------RD---------------YENRLNTLKNVRNVGIN---ICCGGIIGLS 835 (965)
Q Consensus 788 ~i~-i~~es~~~~~~~i~~~-------------~~---------------~~~~~~~i~~~~~~Gi~---v~~~~i~Gl~ 835 (965)
.|+ ++-+.+++.++-+... .+ .+...+.++.+.++|++ +...--+|.+
T Consensus 120 iINdVsg~~d~~m~~~~a~~~~~vVlmh~~G~p~tm~~~~~~y~dv~~ev~~~l~~~i~~a~~~Gi~~~~IilDPG~Gf~ 199 (294)
T 2y5s_A 120 LINDIWGFRQPGAIDAVRDGNSGLCAMHMLGEPQTMQVGEPDYGDVVTDVRDFLAARAQALRDAGVAAERICVDPGFGFG 199 (294)
T ss_dssp EEEETTTTCSTTHHHHHSSSSCEEEEECCCEETTTTEECCCCCSSHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCTTSS
T ss_pred EEEECCCCCchHHHHHHHHhCCCEEEECCCCCCccccccCCccccHHHHHHHHHHHHHHHHHHcCCChhhEEEeCCCccc
Confidence 774 3322244443221110 01 23344556667778874 4444444555
Q ss_pred CCH-HHHHHHHHHHHhcC
Q psy8199 836 ESR-DQRAELIFQLANLN 852 (965)
Q Consensus 836 et~-ed~~~~l~~l~~l~ 852 (965)
.|. ++-.++++.+.++.
T Consensus 200 kt~~~~n~~ll~~l~~l~ 217 (294)
T 2y5s_A 200 KAVVDDNYALLAALPDTA 217 (294)
T ss_dssp SCTTHHHHHHHHTGGGGS
T ss_pred ccchHHHHHHHHHHHHHH
Confidence 666 66666666666554
|
| >2y7e_A 3-keto-5-aminohexanoate cleavage enzyme; lyase, aldolase; 1.28A {Candidatus cloacamonas acidaminovoransorganism_taxid} PDB: 2y7d_A 2y7f_A* 2y7g_A | Back alignment and structure |
|---|
Probab=93.31 E-value=7.5 Score=39.97 Aligned_cols=230 Identities=11% Similarity=0.136 Sum_probs=133.6
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEeeccC-CCCcccHHHHHHHHHHHHhc--CcEeEEecCCC----CHHHHHHHHHhCC
Q psy8199 714 ILSIESVITAAQKAKSDGATRFCMGAAWR-ELKDRDLDNIENMICEVKKI--GLETCLTLGML----NENQAYRLKKVGL 786 (965)
Q Consensus 714 ~~~~eei~~~~~~~~~~g~~~i~l~~g~~-~~~~~~~~~~~~~~~~i~~~--~~~i~~~~~~~----~~e~l~~Lk~aG~ 786 (965)
..+++||.+.+.+..+.|+.-+++-.=.. .-...+.+.|.+++..|++. ++-+.++.|.. .++.+..+ +...
T Consensus 30 PvTpeEia~~A~~a~~AGAaivHlHvRd~~G~ps~d~~~~~e~~~~IR~~~pd~ii~~TTg~~~~~~~eeR~~~~-~~~P 108 (282)
T 2y7e_A 30 PITPEEQAKEAKACFEAGARVIHLHIREDDGRPSQRLDRFQEAISAIREVVPEIIIQISTGGAVGESFDKRLAPL-ALKP 108 (282)
T ss_dssp CCSHHHHHHHHHHHHHHTEEEEEECEECTTSCEECCHHHHHHHHHHHHHHCTTSEEEECSSCSTTCCHHHHHGGG-GGCC
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEEeecCCCCCcCCCHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCHHHHHHHh-hcCC
Confidence 38899999999999999988887754321 22356789999999999963 66666655433 33444444 5667
Q ss_pred CeEeccCCC-CHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCC---CCceeecc
Q psy8199 787 DYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPY---PESVPINN 862 (965)
Q Consensus 787 ~~i~i~~es-~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~---~~~i~~~~ 862 (965)
+..+++.-| +-. ..+. ..+++...+.++.+++.|++... .+| +..++.. +..+.+-+.. +..+.+.
T Consensus 109 e~asl~~gs~Nf~--~~v~-~n~~~~~~~~~~~~~e~Gv~pE~-e~f----d~g~l~~-~~~l~~~Gl~p~~p~~~~~V- 178 (282)
T 2y7e_A 109 EMATLNAGTLNFG--DDIF-INHPADIIRLAEAFKQYNVVPEV-EVY----ESGMVDA-VARLIKKGIITQNPLHIQFV- 178 (282)
T ss_dssp SEEEEECCCEEET--TEEE-CCCHHHHHHHHHHHHHTTCEEEE-EEC----SHHHHHH-HHHHHHTTSCCCSSCEEEEE-
T ss_pred CEEEecccccccc--cccc-cCCHHHHHHHHHHHHHcCCeEEE-EEE----CHHHHHH-HHHHHHcCCCCCCCeEEEEE-
Confidence 888777766 411 1122 46789999999999999998764 344 3344444 4444444421 1222211
Q ss_pred ccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEE-eeCCccccCCCC----C-
Q psy8199 863 LVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSI-FYGDKLLTTDNT----K- 936 (965)
Q Consensus 863 ~~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~-~~g~~~~t~~~~----~- 936 (965)
+=.++ -.+.+++.+.-++....--.|+... ..++.....-.+...++..|-+.- =.+|++.-..|. |
T Consensus 179 -lGv~~-----g~~~~~~~L~~~~~~lp~~~~~~~w-sv~g~Gr~q~p~~~~A~~~GGhvRVGlEDnl~~~~G~~A~sNa 251 (282)
T 2y7e_A 179 -LGVPG-----GMSGKPKNLMYMMEHLKEEIPTATW-AVAGIGRWHIPTSLIAMVTGGHIRCGFEDNIFYHKGVIAESNA 251 (282)
T ss_dssp -ECCTT-----SCCCCHHHHHHHHHHHHHHSTTCEE-EEEECGGGHHHHHHHHHTTTCEEEESTTTCCEEETTEECSCHH
T ss_pred -EecCC-----CCCCCHHHHHHHHHhcccccCCCeE-EEEecCcchHHHHHHHHHcCCCeEEccccccCCCCCCCCCCHH
Confidence 11222 1346777777776543221123321 111122111124445778888832 234554444441 2
Q ss_pred --ChhhHHHHHHcCCCcchhhhHHhhhh
Q psy8199 937 --TNDDSKLLKKLGINTRNIKIKMKNNI 962 (965)
Q Consensus 937 --~~~~~~~~~~~g~~~~~~~~~~~~~~ 962 (965)
+++..++++++|+.+ -+.+|.++.|
T Consensus 252 ~lV~~~~~i~~~lgr~v-Atp~eAR~iL 278 (282)
T 2y7e_A 252 QLVARLARIAKEIGRPL-ATPEQAREIL 278 (282)
T ss_dssp HHHHHHHHHHHHHTCCB-CCHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCC-CCHHHHHHHh
Confidence 446677788999987 4555555544
|
| >3hq1_A 2-isopropylmalate synthase; LEUA, mycobacterium tuberculosis inhibition, bromopyruvate, amino-acid biosynthesis; HET: FLC; 1.70A {Mycobacterium tuberculosis} PDB: 1sr9_A 3hpz_A 3hps_A* 3fig_A 3u6w_A 3hpx_A | Back alignment and structure |
|---|
Probab=93.30 E-value=2.4 Score=48.83 Aligned_cols=219 Identities=11% Similarity=0.069 Sum_probs=130.7
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHhc-----CcEeEEecCCCCH----HHHHHHHHh
Q psy8199 714 ILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI-----GLETCLTLGMLNE----NQAYRLKKV 784 (965)
Q Consensus 714 ~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~-----~~~i~~~~~~~~~----e~l~~Lk~a 784 (965)
.++.++-++.++.+.+.|++.|-..... ....+.+ .++.+.+. +..++.-.-. .+ ..++.++.+
T Consensus 89 ~~s~eeKl~Ia~~L~~lGVd~IEaGfP~--asp~D~e----~v~~i~~~~l~~~~~~i~aL~r~-~~~did~a~eal~~a 161 (644)
T 3hq1_A 89 PMSPARKRRMFDLLVRMGYKEIEVGFPS--ASQTDFD----FVREIIEQGAIPDDVTIQVLTQC-RPELIERTFQACSGA 161 (644)
T ss_dssp CCCHHHHHHHHHHHHHHTCSEEEEECTT--TCHHHHH----HHHHHHHTTCSCTTCEEEEEEES-CHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCC--CChhHHH----HHHHHHhcCCCCCCeEEEEEecC-CHhhHHHHHHHHhcC
Confidence 4899999999999999999998874421 1122233 34444432 4444332211 23 345567788
Q ss_pred CCCeEeccCCCCHHHHhcccCCCCHHHHH----HHHHHHHHcCC---ceeeeEEEecC----CCHHHHHHHHHHHHhcCC
Q psy8199 785 GLDYYNHNLDTSPKLYGDIISTRDYENRL----NTLKNVRNVGI---NICCGGIIGLS----ESRDQRAELIFQLANLNP 853 (965)
Q Consensus 785 G~~~i~i~~es~~~~~~~i~~~~~~~~~~----~~i~~~~~~Gi---~v~~~~i~Gl~----et~ed~~~~l~~l~~l~~ 853 (965)
|.+.+.+.+-+++-..+... +.+.++.+ ++++.+++.+- .+..++.|+.. -..+-+.+.++.+.+.+.
T Consensus 162 ~~~~Vhif~stSd~h~~~~l-~~s~eevle~~~~~v~~a~~~~~~~~~~~~~v~fs~Edasrtd~dfl~ev~~aa~eaG~ 240 (644)
T 3hq1_A 162 PRAIVHFYNSTSILQRRVVF-RANRAEVQAIATDGARKCVEQAAKYPGTQWRFEYSPESYTGTELEYAKQVCDAVGEVIA 240 (644)
T ss_dssp SEEEEEEEEECCHHHHHHTT-CCCHHHHHHHHHHHHHHHHHHHHHSCSSEEEEEEEEETGGGSCHHHHHHHHHHHHHHHC
T ss_pred CCCEEEEEecCCHHHHHHHh-CCCHHHHHHHHHHHHHHHHHHhhhccCceEEEEEcCcccCCCCHHHHHHHHHHHHHhcC
Confidence 99999998888765444332 34455544 44555666542 22334555442 466777788888887531
Q ss_pred -CCCc-eeeccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCC---Cceeccccccccch--hhHHHHhhcCccEEe--
Q psy8199 854 -YPES-VPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPT---SRIRMSAGRKEMGE--TTQAFCFLAGANSIF-- 924 (965)
Q Consensus 854 -~~~~-i~~~~~~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~---~~i~i~~~~~~~~~--~~~~~~l~~Gan~~~-- 924 (965)
..+. +.++ .|.| ....+|.++.+++...+..+|+ ..+.+-+. +..+. .....|+.+||+.+=
T Consensus 241 ~Gad~~~~I~----LpDT----vG~~tP~~~~~li~~l~~~v~~~~~v~l~vH~H-ND~GlAvANslaAv~AGA~~Vdgt 311 (644)
T 3hq1_A 241 PTPERPIIFN----LPAT----VEMTTPNVYADSIEWMSRNLANRESVILSLHPH-NDRGTAVAAAELGFAAGADRIEGC 311 (644)
T ss_dssp CCSSSCEEEE----EEES----SCCSCHHHHHHHHHHHHHHSTTGGGEEEEEEEB-CTTSCHHHHHHHHHHTTCCEEEEB
T ss_pred CCCCceeEEE----ecCC----CcccCHHHHHHHHHHHHHhcccccCceEEEecC-CCCCcHHHHHHHHHHhCCCEEEec
Confidence 1331 2222 2355 2456889999999999888875 22333332 23322 334568899999642
Q ss_pred -e--CCccccCCCCCChhhHHHHHHcCCCcc
Q psy8199 925 -Y--GDKLLTTDNTKTNDDSKLLKKLGINTR 952 (965)
Q Consensus 925 -~--g~~~~t~~~~~~~~~~~~~~~~g~~~~ 952 (965)
. |+ .+++...++...+|...|+.+.
T Consensus 312 i~G~GE---RaGNa~LE~lv~~L~~~Gi~tg 339 (644)
T 3hq1_A 312 LFGNGE---RTGNVCLVTLGLNLFSRGVDPQ 339 (644)
T ss_dssp GGGCSS---TTCBCBHHHHHHHHHTTTCCCS
T ss_pred CCCCCc---cccCccHHHHHHHHHhcccCCc
Confidence 2 23 3455567888888888888754
|
| >1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A | Back alignment and structure |
|---|
Probab=93.13 E-value=1.3 Score=45.08 Aligned_cols=196 Identities=13% Similarity=0.094 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHCCCCEEEEeeccCCC-CcccHHHHHHHHHHHHh-cCcEeEEecCCCCHHHHHHHHHhCCCeEeccCCCC
Q psy8199 719 SVITAAQKAKSDGATRFCMGAAWREL-KDRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTS 796 (965)
Q Consensus 719 ei~~~~~~~~~~g~~~i~l~~g~~~~-~~~~~~~~~~~~~~i~~-~~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~~es~ 796 (965)
+..+.++.+.+.|++.+++..-.... .. ... +.++.+++ .++.+..+.+..+.+.++.+.++|++.+.++.++
T Consensus 33 d~~~~a~~~~~~Gad~i~v~~~d~~~~~~---~~~-~~i~~i~~~~~ipv~v~ggI~~~~~~~~~l~~Gad~V~lg~~~- 107 (244)
T 1vzw_A 33 SPLEAALAWQRSGAEWLHLVDLDAAFGTG---DNR-ALIAEVAQAMDIKVELSGGIRDDDTLAAALATGCTRVNLGTAA- 107 (244)
T ss_dssp CHHHHHHHHHHTTCSEEEEEEHHHHHTSC---CCH-HHHHHHHHHCSSEEEEESSCCSHHHHHHHHHTTCSEEEECHHH-
T ss_pred CHHHHHHHHHHcCCCEEEEecCchhhcCC---ChH-HHHHHHHHhcCCcEEEECCcCCHHHHHHHHHcCCCEEEECchH-
Confidence 44555667778899999987521110 11 112 56666665 6889999999999999999999999999998754
Q ss_pred HHHHhcccCCCCHHHHHHHHHHHHH-cCCceeee--EEEecC--CCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCC
Q psy8199 797 PKLYGDIISTRDYENRLNTLKNVRN-VGINICCG--GIIGLS--ESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPL 871 (965)
Q Consensus 797 ~~~~~~i~~~~~~~~~~~~i~~~~~-~Gi~v~~~--~i~Gl~--et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l 871 (965)
+.. ++...+.++.... ..+.+.+. .+.=.| ++..+..+.++.+.+++ .+.|.++...+ .++.
T Consensus 108 ---l~~------p~~~~~~~~~~g~~~~~~l~~~~g~v~~~g~~~~~~~~~e~~~~~~~~G--~~~i~~~~~~~-~~~~- 174 (244)
T 1vzw_A 108 ---LET------PEWVAKVIAEHGDKIAVGLDVRGTTLRGRGWTRDGGDLYETLDRLNKEG--CARYVVTDIAK-DGTL- 174 (244)
T ss_dssp ---HHC------HHHHHHHHHHHGGGEEEEEEEETTEECCSSSCCCCCBHHHHHHHHHHTT--CCCEEEEEC--------
T ss_pred ---hhC------HHHHHHHHHHcCCcEEEEEEccCCEEEEcCcccCCCCHHHHHHHHHhCC--CCEEEEeccCc-cccc-
Confidence 111 1223333333221 11112211 111122 11114455566677788 77776664433 1221
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhc---CccEEeeCCccccCCCCCChhhHHH
Q psy8199 872 YGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLA---GANSIFYGDKLLTTDNTKTNDDSKL 943 (965)
Q Consensus 872 ~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~---Gan~~~~g~~~~t~~~~~~~~~~~~ 943 (965)
.....+.+.++. ... +..+-..++-.. ..+. ..++.+ ||+++++|..++... .+..+....
T Consensus 175 ---~g~~~~~~~~i~----~~~-~ipvia~GGI~~-~~d~-~~~~~~~~~Gadgv~vG~al~~~~-~~~~~~~~~ 238 (244)
T 1vzw_A 175 ---QGPNLELLKNVC----AAT-DRPVVASGGVSS-LDDL-RAIAGLVPAGVEGAIVGKALYAKA-FTLEEALEA 238 (244)
T ss_dssp ----CCCHHHHHHHH----HTC-SSCEEEESCCCS-HHHH-HHHHTTGGGTEEEEEECHHHHTTS-SCHHHHHHH
T ss_pred ---CCCCHHHHHHHH----Hhc-CCCEEEECCCCC-HHHH-HHHHhhccCCCceeeeeHHHHcCC-CCHHHHHHH
Confidence 112333333332 222 232333332221 1333 345777 999999998764432 244454443
|
| >3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=92.63 E-value=0.93 Score=44.96 Aligned_cols=188 Identities=13% Similarity=0.165 Sum_probs=105.5
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHhc--CcEeEEecCCC--CHHHHHHHHHhCCCeEe
Q psy8199 715 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI--GLETCLTLGML--NENQAYRLKKVGLDYYN 790 (965)
Q Consensus 715 ~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~--~~~i~~~~~~~--~~e~l~~Lk~aG~~~i~ 790 (965)
.+.++-++.++.+. .|+.-+-+.. |+ .+..=.+.++.+++. +..+..+.... .+..++.++++|++.+.
T Consensus 10 ~~~~~~~~~~~~~~-~~~diie~G~---p~---~~~~g~~~i~~ir~~~~~~~i~~~~~~~~~~~~~~~~~~~~Gad~v~ 82 (211)
T 3f4w_A 10 LTLPEAMVFMDKVV-DDVDIIEVGT---PF---LIREGVNAIKAIKEKYPHKEVLADAKIMDGGHFESQLLFDAGADYVT 82 (211)
T ss_dssp CCHHHHHHHHHHHG-GGCSEEEECH---HH---HHHHTTHHHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHHTTCSEEE
T ss_pred CCHHHHHHHHHHhh-cCccEEEeCc---HH---HHhccHHHHHHHHHhCCCCEEEEEEEeccchHHHHHHHHhcCCCEEE
Confidence 46788888888774 4665444421 21 022234566666653 55665543222 23448999999999998
Q ss_pred ccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEec--CCCHHHHHHHHHHHHhcCCCCCceeeccccccCC
Q psy8199 791 HNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL--SESRDQRAELIFQLANLNPYPESVPINNLVQIKG 868 (965)
Q Consensus 791 i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl--~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~g 868 (965)
+..+.. .+...+.++.+++.|+++.. .+ .+|. .+.++.+.+.+ .+.|.+. +|
T Consensus 83 v~~~~~------------~~~~~~~~~~~~~~g~~~~v----~~~~~~t~---~~~~~~~~~~g--~d~i~v~-----~g 136 (211)
T 3f4w_A 83 VLGVTD------------VLTIQSCIRAAKEAGKQVVV----DMICVDDL---PARVRLLEEAG--ADMLAVH-----TG 136 (211)
T ss_dssp EETTSC------------HHHHHHHHHHHHHHTCEEEE----ECTTCSSH---HHHHHHHHHHT--CCEEEEE-----CC
T ss_pred EeCCCC------------hhHHHHHHHHHHHcCCeEEE----EecCCCCH---HHHHHHHHHcC--CCEEEEc-----CC
Confidence 875432 23456777888888876532 32 3444 34456667777 7777554 22
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeCCccccCCCCCChhhHHHH
Q psy8199 869 TPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLL 944 (965)
Q Consensus 869 T~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~~ 944 (965)
..-...++.+ .+.+...|..+++..+-+..+-. .+.-..++.+||+.+++|..+.... ++.+..+.+
T Consensus 137 ~~g~~~~~~~----~~~i~~l~~~~~~~~i~~~gGI~---~~~~~~~~~~Gad~vvvGsai~~~~--d~~~~~~~l 203 (211)
T 3f4w_A 137 TDQQAAGRKP----IDDLITMLKVRRKARIAVAGGIS---SQTVKDYALLGPDVVIVGSAITHAA--DPAGEARKI 203 (211)
T ss_dssp HHHHHTTCCS----HHHHHHHHHHCSSCEEEEESSCC---TTTHHHHHTTCCSEEEECHHHHTCS--SHHHHHHHH
T ss_pred CcccccCCCC----HHHHHHHHHHcCCCcEEEECCCC---HHHHHHHHHcCCCEEEECHHHcCCC--CHHHHHHHH
Confidence 1100111112 23334445566665454554442 3333455789999999998664332 344444433
|
| >2vp8_A Dihydropteroate synthase 2; RV1207 transferase, folate biosynthesis, antibiotic resistance; 2.64A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=92.58 E-value=0.52 Score=49.56 Aligned_cols=77 Identities=17% Similarity=0.158 Sum_probs=50.9
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEeeccCCCC-----cccHHHHHHHHHHHHhcCcEeEEecCCCCHHHHHHHHHhCCCe
Q psy8199 714 ILSIESVITAAQKAKSDGATRFCMGAAWRELK-----DRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDY 788 (965)
Q Consensus 714 ~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~-----~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~e~l~~Lk~aG~~~ 788 (965)
+.+.+++++.++++.+.|+.-+-+.+....+. ...++++...++.+++....+-+++...+.++++.-.++|.+.
T Consensus 61 ~~~~~~a~~~A~~~v~~GAdIIDIGgeSTrPG~~v~~~eEl~Rv~pvI~~l~~~~~~vpISIDT~~~~VaeaAl~aGa~i 140 (318)
T 2vp8_A 61 TFSDAAARDAVHRAVADGADVIDVGGVKAGPGERVDVDTEITRLVPFIEWLRGAYPDQLISVDTWRAQVAKAACAAGADL 140 (318)
T ss_dssp ---CHHHHHHHHHHHHTTCSEEEEC----------CHHHHHHHHHHHHHHHHHHSTTCEEEEECSCHHHHHHHHHHTCCE
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEEEeCCCHHHHHHHHHhCCCE
Confidence 46789999999999999999999975332111 3345667777888876422344456667888888888888876
Q ss_pred Ee
Q psy8199 789 YN 790 (965)
Q Consensus 789 i~ 790 (965)
|+
T Consensus 141 IN 142 (318)
T 2vp8_A 141 IN 142 (318)
T ss_dssp EE
T ss_pred EE
Confidence 53
|
| >1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ... | Back alignment and structure |
|---|
Probab=92.57 E-value=2.5 Score=43.65 Aligned_cols=186 Identities=15% Similarity=0.092 Sum_probs=100.4
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEeeccC-CCCcc---------------cHHHHHHHHHHHHhc--CcEeEEec--C----
Q psy8199 716 SIESVITAAQKAKSDGATRFCMGAAWR-ELKDR---------------DLDNIENMICEVKKI--GLETCLTL--G---- 771 (965)
Q Consensus 716 ~~eei~~~~~~~~~~g~~~i~l~~g~~-~~~~~---------------~~~~~~~~~~~i~~~--~~~i~~~~--~---- 771 (965)
+.++..+.++.+.+.|+..+.+..... |..+. .++...+.++.+++. .+.+.+-. .
T Consensus 29 ~~~~~~~~~~~l~~~GaD~ieig~P~sdp~~DG~~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~Pv~lm~y~n~v~~ 108 (268)
T 1qop_A 29 GIEQSLKIIDTLIDAGADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLAIIREKHPTIPIGLLMYANLVFN 108 (268)
T ss_dssp CHHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSSSCEEEEECHHHHHT
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCccCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEEcccHHHH
Confidence 457788888899999999999854221 21111 134466788888864 44443311 1
Q ss_pred CCCHHHHHHHHHhCCCeEeccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhc
Q psy8199 772 MLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANL 851 (965)
Q Consensus 772 ~~~~e~l~~Lk~aG~~~i~i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l 851 (965)
.-.++.++.++++|++.+.+.-.+ .++..+.++.+++.|+... .++ -+.|..++++.+ .+.
T Consensus 109 ~g~~~~~~~~~~aGadgii~~d~~-------------~e~~~~~~~~~~~~g~~~i--~l~-~p~t~~~~i~~i---~~~ 169 (268)
T 1qop_A 109 NGIDAFYARCEQVGVDSVLVADVP-------------VEESAPFRQAALRHNIAPI--FIC-PPNADDDLLRQV---ASY 169 (268)
T ss_dssp TCHHHHHHHHHHHTCCEEEETTCC-------------GGGCHHHHHHHHHTTCEEE--CEE-CTTCCHHHHHHH---HHH
T ss_pred hhHHHHHHHHHHcCCCEEEEcCCC-------------HHHHHHHHHHHHHcCCcEE--EEE-CCCCCHHHHHHH---Hhh
Confidence 112688999999999987775222 2445667788899998752 232 233444333322 233
Q ss_pred CCCCCceeeccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeCCccc
Q psy8199 852 NPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLL 930 (965)
Q Consensus 852 ~~~~~~i~~~~~~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~~ 930 (965)
. ..++.+... .|+ .........+..+.++..|... +..+-+..+- ...+....++.+|||++++|..++
T Consensus 170 ~--~g~v~~~s~---~G~--tG~~~~~~~~~~~~i~~lr~~~-~~pi~vggGI--~t~e~~~~~~~agAD~vVVGSai~ 238 (268)
T 1qop_A 170 G--RGYTYLLSR---SGV--TGAENRGALPLHHLIEKLKEYH-AAPALQGFGI--SSPEQVSAAVRAGAAGAISGSAIV 238 (268)
T ss_dssp C--CSCEEEESS---SSC--CCSSSCC--CCHHHHHHHHHTT-CCCEEEESSC--CSHHHHHHHHHTTCSEEEECHHHH
T ss_pred C--CCcEEEEec---CCc--CCCccCCCchHHHHHHHHHhcc-CCcEEEECCC--CCHHHHHHHHHcCCCEEEEChHHh
Confidence 3 233422211 232 0111111122334444445544 3323333322 224444455889999999998764
|
| >3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus} | Back alignment and structure |
|---|
Probab=92.53 E-value=0.32 Score=49.17 Aligned_cols=192 Identities=8% Similarity=-0.028 Sum_probs=107.3
Q ss_pred CHHHHHHHHHHHHHCCCCEEE--EeeccC-CCCcccHHHHHHHHHHHHhc-CcEeEEecCCCCHHHHHHHHHhCCCeEec
Q psy8199 716 SIESVITAAQKAKSDGATRFC--MGAAWR-ELKDRDLDNIENMICEVKKI-GLETCLTLGMLNENQAYRLKKVGLDYYNH 791 (965)
Q Consensus 716 ~~eei~~~~~~~~~~g~~~i~--l~~g~~-~~~~~~~~~~~~~~~~i~~~-~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i 791 (965)
+...+.++++.+.+.|++.++ +..|.+ |...... +.++.+++. ...+.+-.. -.+..++.+.++|.+.+.+
T Consensus 24 D~~~l~~~i~~~~~~gad~lhvDvmDG~fvpn~t~G~----~~v~~lr~~~~~DvhLMv~-~p~~~i~~~~~aGAd~itv 98 (237)
T 3cu2_A 24 NWLQLNEEVTTLLENQINVLHFDIADGQFSSLFTVGA----IGIKYFPTHCFKDVHLMVR-NQLEVAKAVVANGANLVTL 98 (237)
T ss_dssp CGGGHHHHHHHHHHTTCCEEEEEEEBSSSSSCBCBCT----HHHHTSCTTSEEEEEEECS-CHHHHHHHHHHTTCSEEEE
T ss_pred CcccHHHHHHHHHHcCCCEEEEEEecCccccchhhhH----HHHHHHhhhCCCCeEEEEE-CHHHHHHHHHHcCCCEEEE
Confidence 444566667777788888654 445543 2222222 455555542 113333222 1267899999999999888
Q ss_pred cCCCCHHHHhcccCCCCHHHHHHHHHHHHHc---------CCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeecc
Q psy8199 792 NLDTSPKLYGDIISTRDYENRLNTLKNVRNV---------GINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINN 862 (965)
Q Consensus 792 ~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~---------Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~ 862 (965)
-.|+.+ ...++++.+++. |..+...+ -+.|..+.++.+ .+ + .+.|.++.
T Consensus 99 H~ea~~-------------~~~~~i~~i~~~~~~~~~~~~g~~~gv~l---~p~Tp~~~l~~~---l~-~--~D~vlvMs 156 (237)
T 3cu2_A 99 QLEQYH-------------DFALTIEWLAKQKTTYANQVYPVLIGACL---CPETPISELEPY---LD-Q--IDVIQLLT 156 (237)
T ss_dssp ETTCTT-------------SHHHHHHHHTTCEEEETTEEEECEEEEEE---CTTSCGGGGTTT---TT-T--CSEEEEES
T ss_pred ecCCcc-------------cHHHHHHHHHhcccccccccCCceEEEEE---eCCChHHHHHHH---hh-c--Cceeeeee
Confidence 877642 124667777877 65553322 235554333211 11 2 67776664
Q ss_pred ccccCCCCCCCCCCCCHHHHHHHHHHHHHHCC----CCceeccccccccchhhHHHHhh--cCccEEeeCCccccCCCCC
Q psy8199 863 LVQIKGTPLYGSSILDPLEFIRTIAVARITMP----TSRIRMSAGRKEMGETTQAFCFL--AGANSIFYGDKLLTTDNTK 936 (965)
Q Consensus 863 ~~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp----~~~i~i~~~~~~~~~~~~~~~l~--~Gan~~~~g~~~~t~~~~~ 936 (965)
.. ||..=. .-....++.++..|.+.+ +..|-+.++-+ .+....+.. +|||.+++|..+... +
T Consensus 157 v~--pgfggq----~f~~~~l~ki~~lr~~~~~~~~~~~I~vdGGI~---~~~~~~~~~~~aGad~~VvGSaIf~~---d 224 (237)
T 3cu2_A 157 LD--PRNGTK----YPSELILDRVIQVEKRLGNRRVEKLINIDGSMT---LELAKYFKQGTHQIDWLVSGSALFSG---E 224 (237)
T ss_dssp EE--TTTTEE----CCHHHHHHHHHHHHHHHGGGGGGCEEEEESSCC---HHHHHHHHHSSSCCCCEEECGGGGSS---C
T ss_pred ec--cCcCCe----ecChhHHHHHHHHHHHHHhcCCCceEEEECCcC---HHHHHHHHHhCCCCcEEEEeeHHhCC---C
Confidence 44 444311 124556666666676664 23454554432 334445688 999999999876432 4
Q ss_pred ChhhHHHHHH
Q psy8199 937 TNDDSKLLKK 946 (965)
Q Consensus 937 ~~~~~~~~~~ 946 (965)
+.+..+.+++
T Consensus 225 ~~~~~~~l~~ 234 (237)
T 3cu2_A 225 LKTNLKVWKS 234 (237)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5666665543
|
| >2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=92.53 E-value=0.98 Score=46.70 Aligned_cols=207 Identities=17% Similarity=0.095 Sum_probs=93.0
Q ss_pred HHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHh-cCcEeEEecCCCCHHHHHHHHHhCCCeEeccCCCCHH
Q psy8199 720 VITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPK 798 (965)
Q Consensus 720 i~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~-~~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~~es~~~ 798 (965)
..+.++.+.+.|+..+.+.+-....... ....+.++.+++ .++++.+..+..+.+.++.+.++|++.+.++-...+
T Consensus 32 ~~~~a~~~~~~Ga~~i~v~d~~~~~~~~--g~~~~~i~~i~~~~~iPvi~~ggi~~~~~i~~~~~~Gad~v~lg~~~~~- 108 (266)
T 2w6r_A 32 LRDWVVEVEKRGAGEILLTSIDRDGTKS--GYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADKALAASVFHF- 108 (266)
T ss_dssp HHHHHHHHHHHTCSEEEEEETTTSSCSS--CCCHHHHHHHGGGCCSCEEEESCCCSTHHHHHHHHHTCSEEECCCCC---
T ss_pred HHHHHHHHHHCCCCEEEEEecCcccCCC--cccHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCcHhhhhHHHHh-
Confidence 3444555567799999997643211111 113456666665 578888888888889999999999999998843210
Q ss_pred HHhcccCCCCHHHHHHHHHHHH--HcCCceeee--------EEEecCCC---HHHHHHHHHHHHhcCCCCCceeeccccc
Q psy8199 799 LYGDIISTRDYENRLNTLKNVR--NVGINICCG--------GIIGLSES---RDQRAELIFQLANLNPYPESVPINNLVQ 865 (965)
Q Consensus 799 ~~~~i~~~~~~~~~~~~i~~~~--~~Gi~v~~~--------~i~Gl~et---~ed~~~~l~~l~~l~~~~~~i~~~~~~P 865 (965)
+..+++...+.++... ...+.+... .+.-.+.. ..+..+.++.+.+++ ...|.++...
T Consensus 109 ------~~~~~~~~~~~~~~~g~~~~~i~~~~d~~~~~g~~~v~~~g~~~~~~~~~~e~~~~~~~~G--~~~i~~t~~~- 179 (266)
T 2w6r_A 109 ------REIDMRELKEYLKKHGGSGQAVVVAIDAKRVDGEFMVFTHSGKKNTGILLRDWVVEVEKRG--AGEILLTSID- 179 (266)
T ss_dssp ----------CHHHHHHCC----CCCEEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHHHHTT--CSEEEEEETT-
T ss_pred ------CCCCHHHHHHHHHHcCCCCCEEEEEEEEEecCCCEEEEECCCceecchhHHHHHHHHHHcC--CCEEEEEeec-
Confidence 0001122222222221 000111111 12212321 012344455666788 6776554221
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeCCccccCCCCCChhhHHHHH
Q psy8199 866 IKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLLK 945 (965)
Q Consensus 866 ~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~~~ 945 (965)
..|+. ..++.+ .+...+... +..+-...+-.. ..+... ++.+||+++++|..++..+ ....+..+.++
T Consensus 180 ~~g~~----~g~~~~----~i~~l~~~~-~ipvia~GGI~~-~ed~~~-~~~~Gadgv~vgsal~~~~-~~~~~~~~~l~ 247 (266)
T 2w6r_A 180 RDGTK----SGYDTE----MIRFVRPLT-TLPIIASGGAGK-MEHFLE-AFLAGADAALAASVFHFRE-IDMRELKEYLK 247 (266)
T ss_dssp TTTTC----SCCCHH----HHHHHGGGC-CSCEEEESCCCS-HHHHHH-HHHHTCSEEEESTTTC---------------
T ss_pred CCCCc----CCCCHH----HHHHHHHHc-CCCEEEeCCCCC-HHHHHH-HHHcCCHHHHccHHHHcCC-CCHHHHHHHHH
Confidence 12332 112322 222223222 222323322222 134443 4578999999999765443 35778888888
Q ss_pred HcCCC
Q psy8199 946 KLGIN 950 (965)
Q Consensus 946 ~~g~~ 950 (965)
+.|+.
T Consensus 248 ~~g~~ 252 (266)
T 2w6r_A 248 KHGVN 252 (266)
T ss_dssp -----
T ss_pred HCCCc
Confidence 88874
|
| >3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri} | Back alignment and structure |
|---|
Probab=92.48 E-value=3.9 Score=40.20 Aligned_cols=188 Identities=19% Similarity=0.108 Sum_probs=102.4
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHhc--CcEeEEecCCCC--HHHHHHHHHhCCCeEe
Q psy8199 715 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI--GLETCLTLGMLN--ENQAYRLKKVGLDYYN 790 (965)
Q Consensus 715 ~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~--~~~i~~~~~~~~--~e~l~~Lk~aG~~~i~ 790 (965)
.+.++.++.++.+.. |+..+.+..+.. ...=.+.++.+++. +..+.+.....+ +..++.+.++|++.+.
T Consensus 10 ~~~~~~~~~~~~~~~-~v~~iev~~~~~------~~~g~~~i~~l~~~~~~~~i~~~l~~~di~~~~~~~a~~~Gad~v~ 82 (207)
T 3ajx_A 10 LSTEAALELAGKVAE-YVDIIELGTPLI------KAEGLSVITAVKKAHPDKIVFADMKTMDAGELEADIAFKAGADLVT 82 (207)
T ss_dssp SCHHHHHHHHHHHGG-GCSEEEECHHHH------HHHCTHHHHHHHHHSTTSEEEEEEEECSCHHHHHHHHHHTTCSEEE
T ss_pred CCHHHHHHHHHHhhc-cCCEEEECcHHH------HhhCHHHHHHHHHhCCCCeEEEEEEecCccHHHHHHHHhCCCCEEE
Confidence 568899999988877 888888844321 22223456666653 555554333334 4458999999999998
Q ss_pred ccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCce-eecccccc-CC
Q psy8199 791 HNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESV-PINNLVQI-KG 868 (965)
Q Consensus 791 i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i-~~~~~~P~-~g 868 (965)
+..+..++ ...++++.+++.|..+...+ . -..|.++..+. +.+.+ .+.+ ....+.|. .|
T Consensus 83 vh~~~~~~------------~~~~~~~~~~~~g~~~gv~~-~-s~~~p~~~~~~---~~~~g--~d~v~~~~~~~~~~~g 143 (207)
T 3ajx_A 83 VLGSADDS------------TIAGAVKAAQAHNKGVVVDL-I-GIEDKATRAQE---VRALG--AKFVEMHAGLDEQAKP 143 (207)
T ss_dssp EETTSCHH------------HHHHHHHHHHHHTCEEEEEC-T-TCSSHHHHHHH---HHHTT--CSEEEEECCHHHHTST
T ss_pred EeccCChH------------HHHHHHHHHHHcCCceEEEE-e-cCCChHHHHHH---HHHhC--CCEEEEEecccccccC
Confidence 66554322 23356667777888752211 1 12466664433 34456 6777 44444442 23
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeCCccccCCCCCChhhHHHHH
Q psy8199 869 TPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLLK 945 (965)
Q Consensus 869 T~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~~~ 945 (965)
+. +.. + .+...+-. +..+-+..+-. .+....++.+|||.+++|..+ +... ++.+..+.++
T Consensus 144 ~~-----~~~--~---~i~~~~~~--~~pi~v~GGI~---~~~~~~~~~aGad~vvvGsaI-~~~~-dp~~~~~~~~ 203 (207)
T 3ajx_A 144 GF-----DLN--G---LLAAGEKA--RVPFSVAGGVK---VATIPAVQKAGAEVAVAGGAI-YGAA-DPAAAAKELR 203 (207)
T ss_dssp TC-----CTH--H---HHHHHHHH--TSCEEEESSCC---GGGHHHHHHTTCSEEEESHHH-HTSS-SHHHHHHHHH
T ss_pred CC-----chH--H---HHHHhhCC--CCCEEEECCcC---HHHHHHHHHcCCCEEEEeeec-cCCC-CHHHHHHHHH
Confidence 21 211 2 22222211 23243443332 223345689999999999866 4322 3445444443
|
| >1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A | Back alignment and structure |
|---|
Probab=92.36 E-value=1.7 Score=44.85 Aligned_cols=182 Identities=13% Similarity=0.105 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHHCCCCEEEEeeccC-CCCc---------------ccHHHHHHHHHHHHhc-CcEeEEecCCCCHH---
Q psy8199 717 IESVITAAQKAKSDGATRFCMGAAWR-ELKD---------------RDLDNIENMICEVKKI-GLETCLTLGMLNEN--- 776 (965)
Q Consensus 717 ~eei~~~~~~~~~~g~~~i~l~~g~~-~~~~---------------~~~~~~~~~~~~i~~~-~~~i~~~~~~~~~e--- 776 (965)
.++..+.++.+.+.|++.+.+..... |..+ ...+...+.++++++. .+.+.+.. ..+..
T Consensus 31 ~~~~~~~~~~l~~~Gad~ielg~p~~dp~~dg~~i~~a~~~al~~g~~~~~~~~~i~~ir~~~~~Pv~~m~-~~~~~~~~ 109 (262)
T 1rd5_A 31 LATTAEALRLLDGCGADVIELGVPCSDPYIDGPIIQASVARALASGTTMDAVLEMLREVTPELSCPVVLLS-YYKPIMFR 109 (262)
T ss_dssp HHHHHHHHHHHHHTTCSSEEEECCCSCCTTSCHHHHHHHHHHHTTTCCHHHHHHHHHHHGGGCSSCEEEEC-CSHHHHSC
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCCCcccCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCEEEEe-cCcHHHHH
Confidence 47888888888899999999853211 1111 2456778888888863 55554432 12211
Q ss_pred HHHHHHHhCCCeEeccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEec-CCCHHHHHHHHHHHHhcCCCC
Q psy8199 777 QAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL-SESRDQRAELIFQLANLNPYP 855 (965)
Q Consensus 777 ~l~~Lk~aG~~~i~i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl-~et~ed~~~~l~~l~~l~~~~ 855 (965)
.++.++++|++.+.+.-.+. ++..+.++.+++.|++.. +++ ..|..+.++.+ .... .
T Consensus 110 ~~~~a~~aGadgv~v~d~~~-------------~~~~~~~~~~~~~g~~~i----~~~a~~t~~e~~~~~---~~~~--~ 167 (262)
T 1rd5_A 110 SLAKMKEAGVHGLIVPDLPY-------------VAAHSLWSEAKNNNLELV----LLTTPAIPEDRMKEI---TKAS--E 167 (262)
T ss_dssp CTHHHHHTTCCEEECTTCBT-------------TTHHHHHHHHHHTTCEEC----EEECTTSCHHHHHHH---HHHC--C
T ss_pred HHHHHHHcCCCEEEEcCCCh-------------hhHHHHHHHHHHcCCceE----EEECCCCCHHHHHHH---HhcC--C
Confidence 23458999999988752112 234556667888998742 223 44544443333 3333 2
Q ss_pred CceeeccccccCC-CCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeCCccc
Q psy8199 856 ESVPINNLVQIKG-TPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLL 930 (965)
Q Consensus 856 ~~i~~~~~~P~~g-T~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~~ 930 (965)
.++.+.. .+| |.-... ......+.+...|... +..+-+..+-.. .+....++.+||+++++|..+.
T Consensus 168 g~v~~~s---~~G~tG~~~~---~~~~~~~~i~~v~~~~-~~pI~vgGGI~~--~e~~~~~~~~GAdgvvVGSai~ 234 (262)
T 1rd5_A 168 GFVYLVS---VNGVTGPRAN---VNPRVESLIQEVKKVT-NKPVAVGFGISK--PEHVKQIAQWGADGVIIGSAMV 234 (262)
T ss_dssp SCEEEEC---SSCCBCTTSC---BCTHHHHHHHHHHHHC-SSCEEEESCCCS--HHHHHHHHHTTCSEEEECHHHH
T ss_pred CeEEEec---CCCCCCCCcC---CCchHHHHHHHHHhhc-CCeEEEECCcCC--HHHHHHHHHcCCCEEEEChHHH
Confidence 3443332 234 221111 1123444555555554 333433333221 3333445779999999998654
|
| >1tx2_A DHPS, dihydropteroate synthase; folate biosynthesis, pterine, MA transferase; HET: 680; 1.83A {Bacillus anthracis} SCOP: c.1.21.1 PDB: 1tww_A* 1twz_A* 1tx0_A* 1tws_A* 3h21_A* 3h22_A* 3h23_A* 3h24_A* 3h26_A* 3h2a_A* 3h2c_A* 3h2e_A* 3h2f_A* 3h2m_A* 3h2n_A* 3h2o_A* 3tya_A* 3tyb_A* 3tyc_A* 3tyd_A* ... | Back alignment and structure |
|---|
Probab=92.13 E-value=0.42 Score=49.85 Aligned_cols=137 Identities=18% Similarity=0.268 Sum_probs=86.5
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEeeccCCCC------cccHHHHHHHHHHHHh-cCcEeEEecCCCCHHHHHHHHHhCC
Q psy8199 714 ILSIESVITAAQKAKSDGATRFCMGAAWRELK------DRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGL 786 (965)
Q Consensus 714 ~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~------~~~~~~~~~~~~~i~~-~~~~i~~~~~~~~~e~l~~Lk~aG~ 786 (965)
+.+.+++++.+++..+.|+.-+.+.+....+. ...++++...++.+++ .++.++ +...+.++++.-.++|.
T Consensus 59 ~~~~~~a~~~a~~~v~~GAdiIDIGgeStrPga~~v~~~eE~~RvvpvI~~l~~~~~vpiS--IDT~~~~V~~aAl~aGa 136 (297)
T 1tx2_A 59 YNEVDAAVRHAKEMRDEGAHIIDIGGESTRPGFAKVSVEEEIKRVVPMIQAVSKEVKLPIS--IDTYKAEVAKQAIEAGA 136 (297)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEEEESCC----CCCCCHHHHHHHHHHHHHHHHHHSCSCEE--EECSCHHHHHHHHHHTC
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCceEE--EeCCCHHHHHHHHHcCC
Confidence 35789999999999999999999976432111 3446667777788875 355554 44457888888888888
Q ss_pred CeEe-ccCCC-CHHHHhccc---C----CC-----C--------HHHHHHHHHHHHHcCCc---eeeeEEEecCCCHHHH
Q psy8199 787 DYYN-HNLDT-SPKLYGDII---S----TR-----D--------YENRLNTLKNVRNVGIN---ICCGGIIGLSESRDQR 841 (965)
Q Consensus 787 ~~i~-i~~es-~~~~~~~i~---~----~~-----~--------~~~~~~~i~~~~~~Gi~---v~~~~i~Gl~et~ed~ 841 (965)
+.|+ ++-+. +++.++-+. . -+ . .+...+.++.+.++|++ +...-.+|++.+.++-
T Consensus 137 ~iINdvsg~~~d~~m~~~aa~~g~~vVlmh~~G~p~y~d~v~ev~~~l~~~i~~a~~~GI~~~~IilDPg~Gfgk~~~~n 216 (297)
T 1tx2_A 137 HIINDIWGAKAEPKIAEVAAHYDVPIILMHNRDNMNYRNLMADMIADLYDSIKIAKDAGVRDENIILDPGIGFAKTPEQN 216 (297)
T ss_dssp CEEEETTTTSSCTHHHHHHHHHTCCEEEECCCSCCCCSSHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCTTSSCCHHHH
T ss_pred CEEEECCCCCCCHHHHHHHHHhCCcEEEEeCCCCCCcchHHHHHHHHHHHHHHHHHHcCCChhcEEEeCCCCcCCCHHHH
Confidence 7774 33333 444442211 0 01 1 23445567778888885 5555555556777777
Q ss_pred HHHHHHHHhcC
Q psy8199 842 AELIFQLANLN 852 (965)
Q Consensus 842 ~~~l~~l~~l~ 852 (965)
.++++.++++.
T Consensus 217 ~~ll~~l~~l~ 227 (297)
T 1tx2_A 217 LEAMRNLEQLN 227 (297)
T ss_dssp HHHHHTGGGGG
T ss_pred HHHHHHHHHHH
Confidence 77766666654
|
| >4hb7_A Dihydropteroate synthase; transferase; 1.95A {Staphylococcus aureus} PDB: 1ad1_A 1ad4_A* | Back alignment and structure |
|---|
Probab=92.04 E-value=0.97 Score=45.99 Aligned_cols=137 Identities=17% Similarity=0.248 Sum_probs=88.8
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEeeccCCC------CcccHHHHHHHHHHHHhcCcEeEEecCCCCHHHHHHHHHhCCC
Q psy8199 714 ILSIESVITAAQKAKSDGATRFCMGAAWREL------KDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLD 787 (965)
Q Consensus 714 ~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~------~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~e~l~~Lk~aG~~ 787 (965)
+.+.+..++.++++.+.|+.-+-+.+-...+ ....++++...++.+++.+ +.++......++++.-.++|++
T Consensus 26 ~~~~~~a~~~a~~m~~~GAdiIDIGgeSTRPga~~vs~eeE~~Rv~pvi~~l~~~~--v~iSIDT~~~~Va~~al~aGa~ 103 (270)
T 4hb7_A 26 FNNVETAINRVKAMIDEGADIIDVGGVSTRPGHEMVTLEEELNRVLPVVEAIVGFD--VKISVDTFRSEVAEACLKLGVD 103 (270)
T ss_dssp -CHHHHHHHHHHHHHHTTCSEEEEESCCCSTTCCCCCHHHHHHHHHHHHHHHTTSS--SEEEEECSCHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCccCCCCCCCCchHHHHHHHHHHHHHhhcCC--CeEEEECCCHHHHHHHHHhccc
Confidence 4689999999999999999999986533221 1234677888888887654 4555666788888888888988
Q ss_pred eEe-cc-CCCCHHHHhcccC----------C---C--C-----HHHHHHHHHHHHHcCCc---eeeeEEEecCCCHHHHH
Q psy8199 788 YYN-HN-LDTSPKLYGDIIS----------T---R--D-----YENRLNTLKNVRNVGIN---ICCGGIIGLSESRDQRA 842 (965)
Q Consensus 788 ~i~-i~-~es~~~~~~~i~~----------~---~--~-----~~~~~~~i~~~~~~Gi~---v~~~~i~Gl~et~ed~~ 842 (965)
.|+ +. ...+++.++-+.. . . + .+...+.++.+.++|++ +...-=+|+|-|.++=.
T Consensus 104 iINDVs~g~~d~~m~~~va~~~~~~vlMH~~~~p~~~~vv~ev~~~l~~~i~~a~~aGI~~~~IilDPGiGFgKt~~~N~ 183 (270)
T 4hb7_A 104 MINDQWAGLYDHRMFQIVAKYDAEIILMHNGNGNRDEPVVEEMLTSLLAQAHQAKIAGIPSNKIWLDPGIGFAKTRNEEA 183 (270)
T ss_dssp EEEETTTTSSCTHHHHHHHHTTCEEEEECCCSSCCSSCHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCTTSSCCHHHHH
T ss_pred eeccccccccchhHHHHHHHcCCCeEEeccccCCccccchhHHHHHHHHHHHHHHHcCCCCceEEEeCCCCcccccccHH
Confidence 887 33 3335655543221 0 0 1 22334556778889994 33333334468888777
Q ss_pred HHHHHHHhcC
Q psy8199 843 ELIFQLANLN 852 (965)
Q Consensus 843 ~~l~~l~~l~ 852 (965)
+.++.+.++.
T Consensus 184 ~ll~~l~~~~ 193 (270)
T 4hb7_A 184 EVMARLDELV 193 (270)
T ss_dssp HHHTCHHHHH
T ss_pred HHHhhHHHHh
Confidence 6666666554
|
| >2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A | Back alignment and structure |
|---|
Probab=92.02 E-value=7.1 Score=38.35 Aligned_cols=163 Identities=12% Similarity=0.078 Sum_probs=99.3
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHhcCcEeEEecCCCCHHHHHHHHHhCCCeEeccCC
Q psy8199 715 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYNHNLD 794 (965)
Q Consensus 715 ~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~~e 794 (965)
.++++.++.++.+.+.|++-+-+..- .. .-.+.++.+++..+.+.... .++.+.++...++|.+.+..+ +
T Consensus 22 ~~~~~~~~~~~~l~~gGv~~iel~~k-----~~---~~~~~i~~~~~~~~~~gag~-vl~~d~~~~A~~~GAd~v~~~-~ 91 (207)
T 2yw3_A 22 RGGEDLLGLARVLEEEGVGALEITLR-----TE---KGLEALKALRKSGLLLGAGT-VRSPKEAEAALEAGAAFLVSP-G 91 (207)
T ss_dssp CSCCCHHHHHHHHHHTTCCEEEEECS-----ST---HHHHHHHHHTTSSCEEEEES-CCSHHHHHHHHHHTCSEEEES-S
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCC-----Ch---HHHHHHHHHhCCCCEEEeCe-EeeHHHHHHHHHcCCCEEEcC-C
Confidence 45667788888888889998877421 11 12355555555334444444 668999999999999998766 2
Q ss_pred CCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCCC
Q psy8199 795 TSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGS 874 (965)
Q Consensus 795 s~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~~ 874 (965)
++ .+.++.+++.|+.+ +.|. .|.+++... .+.+ .+.+.++ | .
T Consensus 92 ~d----------------~~v~~~~~~~g~~~----i~G~-~t~~e~~~A----~~~G--ad~v~~f---p--a------ 133 (207)
T 2yw3_A 92 LL----------------EEVAALAQARGVPY----LPGV-LTPTEVERA----LALG--LSALKFF---P--A------ 133 (207)
T ss_dssp CC----------------HHHHHHHHHHTCCE----EEEE-CSHHHHHHH----HHTT--CCEEEET---T--T------
T ss_pred CC----------------HHHHHHHHHhCCCE----EecC-CCHHHHHHH----HHCC--CCEEEEe---c--C------
Confidence 32 25566677778653 3442 466665443 4567 7888773 3 1
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeCCcccc
Q psy8199 875 SILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLT 931 (965)
Q Consensus 875 ~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~~t 931 (965)
+.....++ +...|-.+|+..+-..++-.. .+.. ..+.+||+.+.+|..+..
T Consensus 134 ~~~gG~~~---lk~l~~~~~~ipvvaiGGI~~--~n~~-~~l~aGa~~vavgSai~~ 184 (207)
T 2yw3_A 134 EPFQGVRV---LRAYAEVFPEVRFLPTGGIKE--EHLP-HYAALPNLLAVGGSWLLQ 184 (207)
T ss_dssp TTTTHHHH---HHHHHHHCTTCEEEEBSSCCG--GGHH-HHHTCSSBSCEEESGGGS
T ss_pred ccccCHHH---HHHHHhhCCCCcEEEeCCCCH--HHHH-HHHhCCCcEEEEehhhhC
Confidence 11212333 445566777664444444322 3333 458899999988886533
|
| >1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=91.96 E-value=1.6 Score=43.92 Aligned_cols=194 Identities=12% Similarity=0.085 Sum_probs=100.2
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEe--eccC-CCCcccHHHHHHHHHHHHhc-CcEeEEecCCCC-HHHHHHHHHhCCCeE
Q psy8199 715 LSIESVITAAQKAKSDGATRFCMG--AAWR-ELKDRDLDNIENMICEVKKI-GLETCLTLGMLN-ENQAYRLKKVGLDYY 789 (965)
Q Consensus 715 ~~~eei~~~~~~~~~~g~~~i~l~--~g~~-~~~~~~~~~~~~~~~~i~~~-~~~i~~~~~~~~-~e~l~~Lk~aG~~~i 789 (965)
.+++...+.++.+.+.|++.+.+. .|.+ +... .-.+.++.+++. +..+.+....-+ ++.++.+.++|++.+
T Consensus 20 ~d~~~~~~~i~~~~~~G~d~i~l~~~dg~f~~~~~----~~~~~i~~l~~~~~~~~~v~l~vnd~~~~v~~~~~~Gad~v 95 (230)
T 1rpx_A 20 ANFSKLGEQVKAIEQAGCDWIHVDVMDGRFVPNIT----IGPLVVDSLRPITDLPLDVHLMIVEPDQRVPDFIKAGADIV 95 (230)
T ss_dssp SCGGGHHHHHHHHHHTTCCCEEEEEEBSSSSSCBC----CCHHHHHHHGGGCCSCEEEEEESSSHHHHHHHHHHTTCSEE
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeeccCCcccccc----cCHHHHHHHHhccCCcEEEEEEecCHHHHHHHHHHcCCCEE
Confidence 456677777777888898877665 3322 1111 123566666653 333333222222 357889999999999
Q ss_pred eccCC--CCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccccccC
Q psy8199 790 NHNLD--TSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIK 867 (965)
Q Consensus 790 ~i~~e--s~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~ 867 (965)
.+..+ ..+ ...+.++.+++.|+.+...+. ..|..+..+.+ . .+ .+.+-+..+.|
T Consensus 96 ~vh~~~~~~~-------------~~~~~~~~~~~~g~~ig~~~~---p~t~~e~~~~~---~-~~--~d~vl~~~~~p-- 151 (230)
T 1rpx_A 96 SVHCEQSSTI-------------HLHRTINQIKSLGAKAGVVLN---PGTPLTAIEYV---L-DA--VDLVLIMSVNP-- 151 (230)
T ss_dssp EEECSTTTCS-------------CHHHHHHHHHHTTSEEEEEEC---TTCCGGGGTTT---T-TT--CSEEEEESSCT--
T ss_pred EEEecCccch-------------hHHHHHHHHHHcCCcEEEEeC---CCCCHHHHHHH---H-hh--CCEEEEEEEcC--
Confidence 88765 321 123556666777876443322 33443333211 1 12 56665444444
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCC----CCceeccccccccchhhHHHHhhcCccEEeeCCccccCCCCCChhhHHH
Q psy8199 868 GTPLYGSSILDPLEFIRTIAVARITMP----TSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKL 943 (965)
Q Consensus 868 gT~l~~~~~~~~~~~~~~ia~~R~~lp----~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~ 943 (965)
|..=.... +.. ++.+...|..++ +..+-+..+-.. .... .++.+||+++.+|..+ +... ++.+..+.
T Consensus 152 g~~g~~~~-~~~---~~~i~~l~~~~~~~~~~~pi~v~GGI~~--~n~~-~~~~aGad~vvvgSaI-~~a~-dp~~a~~~ 222 (230)
T 1rpx_A 152 GFGGQSFI-ESQ---VKKISDLRKICAERGLNPWIEVDGGVGP--KNAY-KVIEAGANALVAGSAV-FGAP-DYAEAIKG 222 (230)
T ss_dssp TCSSCCCC-TTH---HHHHHHHHHHHHHHTCCCEEEEESSCCT--TTHH-HHHHHTCCEEEESHHH-HTSS-CHHHHHHH
T ss_pred CCCCcccc-HHH---HHHHHHHHHHHHhcCCCceEEEECCCCH--HHHH-HHHHcCCCEEEEChhh-hCCC-CHHHHHHH
Confidence 32111112 222 222333343332 333444444332 2333 4678899999999866 4322 45555555
Q ss_pred HH
Q psy8199 944 LK 945 (965)
Q Consensus 944 ~~ 945 (965)
++
T Consensus 223 l~ 224 (230)
T 1rpx_A 223 IK 224 (230)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A | Back alignment and structure |
|---|
Probab=91.85 E-value=10 Score=40.33 Aligned_cols=181 Identities=13% Similarity=0.080 Sum_probs=116.3
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEeeccC-----C----CC---------------cccHHHHHHHHHHHHhcCcEeEEecC
Q psy8199 716 SIESVITAAQKAKSDGATRFCMGAAWR-----E----LK---------------DRDLDNIENMICEVKKIGLETCLTLG 771 (965)
Q Consensus 716 ~~eei~~~~~~~~~~g~~~i~l~~g~~-----~----~~---------------~~~~~~~~~~~~~i~~~~~~i~~~~~ 771 (965)
|.|...+.++.+++.|++-+-++..-. + +. ..+.+.+..+.+..++.|+.+.+++-
T Consensus 33 s~e~a~~li~~ak~aGadavKfq~~k~~tl~s~~~~~fq~~~~~~~~y~~~~~~~l~~e~~~~L~~~~~~~Gi~~~st~~ 112 (349)
T 2wqp_A 33 SLKTAFEMVDAAYNAGAEVVKHQTHIVEDEMSDEAKQVIPGNADVSIYEIMERCALNEEDEIKLKEYVESKGMIFISTLF 112 (349)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEECCHHHHCCGGGGGCCCTTCSSCHHHHHHHHCCCHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CHHHHHHHHHHHHHhCCCEEeeeecccccccCcchhccccCCCCccHHHHHHHhCCCHHHHHHHHHHHHHhCCeEEEeeC
Confidence 688999999999999999999984211 0 00 13456666666666678998887654
Q ss_pred CCCHHHHHHHHHhCCCeEeccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhc
Q psy8199 772 MLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANL 851 (965)
Q Consensus 772 ~~~~e~l~~Lk~aG~~~i~i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l 851 (965)
+.+.++.|.+.|++.+-++=-. + .....++.+.+.|-++- +=-|+ -|.+|+...++++++.
T Consensus 113 --d~~svd~l~~~~v~~~KI~S~~-------~-------~n~~LL~~va~~gkPvi--LstGm-at~~Ei~~Ave~i~~~ 173 (349)
T 2wqp_A 113 --SRAAALRLQRMDIPAYKIGSGE-------C-------NNYPLIKLVASFGKPII--LSTGM-NSIESIKKSVEIIREA 173 (349)
T ss_dssp --SHHHHHHHHHHTCSCEEECGGG-------T-------TCHHHHHHHHTTCSCEE--EECTT-CCHHHHHHHHHHHHHH
T ss_pred --CHHHHHHHHhcCCCEEEECccc-------c-------cCHHHHHHHHhcCCeEE--EECCC-CCHHHHHHHHHHHHHc
Confidence 7899999999999888777211 0 11455666666676642 23344 4999999999999998
Q ss_pred CCCCCceeeccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeCCcc
Q psy8199 852 NPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKL 929 (965)
Q Consensus 852 ~~~~~~i~~~~~~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~ 929 (965)
+ .+.+-+. +|.- +|.+...--++.+...+..+|...+-.+.. ..|......|+..||+ +++..+
T Consensus 174 G--~~iiLlh------c~s~--Yp~~~~~~nL~ai~~lk~~f~~lpVg~sdH--t~G~~~~~AAvAlGA~--iIEkH~ 237 (349)
T 2wqp_A 174 G--VPYALLH------CTNI--YPTPYEDVRLGGMNDLSEAFPDAIIGLSDH--TLDNYACLGAVALGGS--ILERHF 237 (349)
T ss_dssp T--CCEEEEE------CCCC--SSCCGGGCCTHHHHHHHHHCTTSEEEEECC--SSSSHHHHHHHHHTCC--EEEEEB
T ss_pred C--CCEEEEe------ccCC--CCCChhhcCHHHHHHHHHHCCCCCEEeCCC--CCcHHHHHHHHHhCCC--EEEeCC
Confidence 7 4333322 2211 111111224666777777775443433221 3356777889999999 677665
|
| >4gj1_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; HISA, csgid, niaid,; 2.15A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=91.76 E-value=0.075 Score=54.30 Aligned_cols=194 Identities=11% Similarity=0.098 Sum_probs=107.7
Q ss_pred HHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHH-hcCcEeEEecCCCCHHHHHHHHHhCCCeEeccCCC--CHH
Q psy8199 722 TAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVK-KIGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDT--SPK 798 (965)
Q Consensus 722 ~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~-~~~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~~es--~~~ 798 (965)
+.++.+.+.|++++++.+-... ........++++++. +..++++.-.|..+.+.++.+-++|++++.++-.. +|+
T Consensus 35 ~~a~~~~~~gad~lhvvDld~a--~~~~~~~~~~i~~i~~~~~~pl~vGGGIrs~e~~~~~l~~GadkVii~t~a~~~p~ 112 (243)
T 4gj1_A 35 KKFKEYEKAGAKELHLVDLTGA--KDPSKRQFALIEKLAKEVSVNLQVGGGIRSKEEVKALLDCGVKRVVIGSMAIKDAT 112 (243)
T ss_dssp HHHHHHHHHTCCEEEEEEHHHH--HCGGGCCHHHHHHHHHHCCSEEEEESSCCCHHHHHHHHHTTCSEEEECTTTTTCHH
T ss_pred HHHHHHHHCCCCEEEEEecCcc--cccchhHHHHHHHHHHhcCCCeEeccccccHHHHHHHHHcCCCEEEEccccccCCc
Confidence 3456677789999999874211 011122234555554 47899999999999999999999999999999655 555
Q ss_pred HHhcccCCCCHHHHHHHHHHHHHcCCceeee-------EEEecC---CCHHHHHHHHHHHHhcCCCCCceeeccccccCC
Q psy8199 799 LYGDIISTRDYENRLNTLKNVRNVGINICCG-------GIIGLS---ESRDQRAELIFQLANLNPYPESVPINNLVQIKG 868 (965)
Q Consensus 799 ~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~-------~i~Gl~---et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~g 868 (965)
+.+++. +.....-+-+... .++-.+ .|..+..+.++.+.+++ ...+-++ -+-..|
T Consensus 113 li~e~~------------~~~g~q~iv~~iD~~~~~~~~v~~~gw~~~~~~~~~~~~~~~~~~g--~~eil~t-~Id~DG 177 (243)
T 4gj1_A 113 LCLEIL------------KEFGSEAIVLALDTILKEDYVVAVNAWQEASDKKLMEVLDFYSNKG--LKHILCT-DISKDG 177 (243)
T ss_dssp HHHHHH------------HHHCTTTEEEEEEEEESSSEEEC--------CCBHHHHHHHHHTTT--CCEEEEE-ETTC--
T ss_pred hHHHHH------------hcccCceEEEEEEEEeCCCCEEEecCceecccchHHHHHHHHhhcC--CcEEEee-eecccc
Confidence 543322 1111111111111 121112 23345667777777877 6665444 233467
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeCCccccCCCCCChhhHHHH
Q psy8199 869 TPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLL 944 (965)
Q Consensus 869 T~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~~ 944 (965)
|- . .++.+ . +...+...|+..+-.+++-..+ .++.. ++.+++++.+|.-+ -.+--+.+|..+.+
T Consensus 178 t~-~---G~d~~-l---~~~l~~~~~~ipviasGGv~~~-~Dl~~--l~~~~~gvivg~Al-~~g~i~l~ea~~~l 241 (243)
T 4gj1_A 178 TM-Q---GVNVR-L---YKLIHEIFPNICIQASGGVASL-KDLEN--LKGICSGVIVGKAL-LDGVFSVEEGIRCL 241 (243)
T ss_dssp -------CCCHH-H---HHHHHHHCTTSEEEEESCCCSH-HHHHH--TTTTCSEEEECHHH-HTTSSCHHHHHHHH
T ss_pred cc-c---CCCHH-H---HHHHHHhcCCCCEEEEcCCCCH-HHHHH--HHccCchhehHHHH-HCCCCCHHHHHHHh
Confidence 62 1 22333 2 2333445666655566655443 44433 47789999999754 33334666665544
|
| >3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=91.41 E-value=5.1 Score=40.46 Aligned_cols=180 Identities=12% Similarity=0.016 Sum_probs=95.1
Q ss_pred HHHHHHHHHHCCCCEEEEeeccCC----CCcccHHHHHHHHHHHH----hcCcEeEEecCCCCHHHHHHHHHhCCCeEec
Q psy8199 720 VITAAQKAKSDGATRFCMGAAWRE----LKDRDLDNIENMICEVK----KIGLETCLTLGMLNENQAYRLKKVGLDYYNH 791 (965)
Q Consensus 720 i~~~~~~~~~~g~~~i~l~~g~~~----~~~~~~~~~~~~~~~i~----~~~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i 791 (965)
+.+.++++.+.|++.|.+=.-..+ ....+.+.+.++++.++ +.+..+.++. .++..+++|++.+++
T Consensus 45 ~~~~~~~al~~Gv~~vqlR~K~~~~~~~~~~l~~~~~~~~a~~l~~l~~~~~~~liInd------~~~lA~~~gAdGVHL 118 (243)
T 3o63_A 45 LAQFAEAALAGGVDIIQLRDKGSPGELRFGPLQARDELAACEILADAAHRYGALFAVND------RADIARAAGADVLHL 118 (243)
T ss_dssp HHHHHHHHHHTTCSEEEECCTTCHHHHHHCSCCHHHHHHHHHHHHHHHHHTTCEEEEES------CHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHCCCCEEEEccCCCCccccccCCCHHHHHHHHHHHHHHHHhhCCEEEEeC------HHHHHHHhCCCEEEe
Confidence 455555667789998888332110 00022445555555554 3678887773 234466789999999
Q ss_pred cCCC-CHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEec-CCCHHHHHHHHHHHHhcCCCCCceeeccccccCCC
Q psy8199 792 NLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGT 869 (965)
Q Consensus 792 ~~es-~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl-~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT 869 (965)
+.+. .....+++. | ...++|. -.|.+++.. +.+.+ .+.|.+.+++|.+.-
T Consensus 119 g~~dl~~~~~r~~~------------------~----~~~~iG~S~ht~~Ea~~----A~~~G--aDyI~vgpvf~T~tK 170 (243)
T 3o63_A 119 GQRDLPVNVARQIL------------------A----PDTLIGRSTHDPDQVAA----AAAGD--ADYFCVGPCWPTPTK 170 (243)
T ss_dssp CTTSSCHHHHHHHS------------------C----TTCEEEEEECSHHHHHH----HHHSS--CSEEEECCSSCCCC-
T ss_pred cCCcCCHHHHHHhh------------------C----CCCEEEEeCCCHHHHHH----HhhCC--CCEEEEcCccCCCCC
Confidence 9755 332222211 1 2345666 377776543 34567 899999987775433
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCC-CCceeccccccccchhhHHHHhhcCccEEeeCCccccCCCCCChhhHHHH
Q psy8199 870 PLYGSSILDPLEFIRTIAVARITMP-TSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLL 944 (965)
Q Consensus 870 ~l~~~~~~~~~~~~~~ia~~R~~lp-~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~~ 944 (965)
+. .++.+.+.+.++ +...+ +..+-..++- ..+--..++.+||+++.+|+.+.... ++.+..+.+
T Consensus 171 ~~--~~~~gl~~l~~~----~~~~~~~iPvvAiGGI---~~~ni~~~~~aGa~gvav~sai~~a~--dp~~a~~~l 235 (243)
T 3o63_A 171 PG--RAAPGLGLVRVA----AELGGDDKPWFAIGGI---NAQRLPAVLDAGARRIVVVRAITSAD--DPRAAAEQL 235 (243)
T ss_dssp ------CCCHHHHHHH----HTC---CCCEEEESSC---CTTTHHHHHHTTCCCEEESHHHHTCS--SHHHHHHHH
T ss_pred CC--cchhhHHHHHHH----HHhccCCCCEEEecCC---CHHHHHHHHHcCCCEEEEeHHHhCCC--CHHHHHHHH
Confidence 22 133444433332 21121 3323233322 23333455889999999998764432 344444333
|
| >3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=91.40 E-value=5.2 Score=41.08 Aligned_cols=186 Identities=15% Similarity=0.086 Sum_probs=105.9
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEeecc-CCCCcc---------------cHHHHHHHHHHHHhc--CcEeEE----ec--C
Q psy8199 716 SIESVITAAQKAKSDGATRFCMGAAW-RELKDR---------------DLDNIENMICEVKKI--GLETCL----TL--G 771 (965)
Q Consensus 716 ~~eei~~~~~~~~~~g~~~i~l~~g~-~~~~~~---------------~~~~~~~~~~~i~~~--~~~i~~----~~--~ 771 (965)
+.+.-++.++.+.+.|+.-+-+.-.. +|..+. .++.++++++++++. .+.+.+ |+ .
T Consensus 32 ~~~~~~~~~~~l~~~GaD~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~v~~~r~~~~~~Pivlm~Y~n~v~~ 111 (271)
T 3nav_A 32 NPEQSLAIMQTLIDAGADALELGMPFSDPLADGPTIQGANLRALAAKTTPDICFELIAQIRARNPETPIGLLMYANLVYA 111 (271)
T ss_dssp CHHHHHHHHHHHHHTTCSSEEEECCCCCGGGCCSHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTSCEEEEECHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecCcHHHH
Confidence 56778888888889999888885321 121111 134678888888863 444433 22 1
Q ss_pred CCCHHHHHHHHHhCCCeEeccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhc
Q psy8199 772 MLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANL 851 (965)
Q Consensus 772 ~~~~e~l~~Lk~aG~~~i~i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l 851 (965)
.-.+..++.++++|++.+.+. +-.+++..+..+.++++|+.. -+++ -+.|.++++ +.+.+.
T Consensus 112 ~g~~~f~~~~~~aGvdGvIip-------------Dlp~ee~~~~~~~~~~~gl~~--I~lv-ap~t~~eri---~~i~~~ 172 (271)
T 3nav_A 112 RGIDDFYQRCQKAGVDSVLIA-------------DVPTNESQPFVAAAEKFGIQP--IFIA-PPTASDETL---RAVAQL 172 (271)
T ss_dssp TCHHHHHHHHHHHTCCEEEET-------------TSCGGGCHHHHHHHHHTTCEE--EEEE-CTTCCHHHH---HHHHHH
T ss_pred HhHHHHHHHHHHCCCCEEEEC-------------CCCHHHHHHHHHHHHHcCCeE--EEEE-CCCCCHHHH---HHHHHH
Confidence 113778999999999997764 222345677788899999974 2233 345544444 334444
Q ss_pred CCCCCceeeccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeCCccc
Q psy8199 852 NPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLL 930 (965)
Q Consensus 852 ~~~~~~i~~~~~~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~~ 930 (965)
. ..++.+-...-.-|+ .. .. +.+..+.+...|...+ ..+-+ +-+--.++....++..||+++++|..++
T Consensus 173 ~--~gfiY~vs~~GvTG~--~~--~~-~~~~~~~v~~vr~~~~-~Pv~v--GfGIst~e~~~~~~~~gADgvIVGSAiv 241 (271)
T 3nav_A 173 G--KGYTYLLSRAGVTGA--ET--KA-NMPVHALLERLQQFDA-PPALL--GFGISEPAQVKQAIEAGAAGAISGSAVV 241 (271)
T ss_dssp C--CSCEEECCCC------------C-CHHHHHHHHHHHHTTC-CCEEE--CSSCCSHHHHHHHHHTTCSEEEESHHHH
T ss_pred C--CCeEEEEeccCCCCc--cc--CC-chhHHHHHHHHHHhcC-CCEEE--ECCCCCHHHHHHHHHcCCCEEEECHHHH
Confidence 5 455543222222232 11 11 2456666777777653 22333 3322123433446889999999998653
|
| >2vef_A Dihydropteroate synthase; antibiotic resistance, transferase, folate biosynthesis; 1.8A {Streptococcus pneumoniae} PDB: 2veg_A* | Back alignment and structure |
|---|
Probab=91.32 E-value=1.3 Score=46.74 Aligned_cols=137 Identities=17% Similarity=0.231 Sum_probs=86.5
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEeeccCCCC------cccHHHHHHHHHHHHhc-CcEeEEecCCCCHHHHHHHHHhCC
Q psy8199 714 ILSIESVITAAQKAKSDGATRFCMGAAWRELK------DRDLDNIENMICEVKKI-GLETCLTLGMLNENQAYRLKKVGL 786 (965)
Q Consensus 714 ~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~------~~~~~~~~~~~~~i~~~-~~~i~~~~~~~~~e~l~~Lk~aG~ 786 (965)
+.+++.+++.++++.+.|+.-+-+.+-...+. ..+++++...++.+++. ++. +++.....++++.-.++|.
T Consensus 29 ~~~~~~a~~~a~~~v~~GAdIIDIGgeSTrPGa~~v~~~eE~~Rv~pvI~~l~~~~~vp--iSIDT~~~~Va~aAl~aGa 106 (314)
T 2vef_A 29 FFALEQALQQARKLIAEGASMLDIGGESTRPGSSYVEIEEEIQRVVPVIKAIRKESDVL--ISIDTWKSQVAEAALAAGA 106 (314)
T ss_dssp -CHHHHHHHHHHHHHHTTCSEEEEECCC-----CHHHHHHHHHHHHHHHHHHHHHCCCE--EEEECSCHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCce--EEEeCCCHHHHHHHHHcCC
Confidence 46899999999999999999999976433222 14577788888888764 544 4556667888888888888
Q ss_pred CeEe-ccCCC-CHHHHhc----------ccC-----CCC---------------------------HHH-----HHHHHH
Q psy8199 787 DYYN-HNLDT-SPKLYGD----------IIS-----TRD---------------------------YEN-----RLNTLK 817 (965)
Q Consensus 787 ~~i~-i~~es-~~~~~~~----------i~~-----~~~---------------------------~~~-----~~~~i~ 817 (965)
+.|+ ++-.. +++.++- ++. +.+ .++ ..+.++
T Consensus 107 ~iINDVsg~~~d~~m~~v~a~~~~~vvlmh~~~~g~p~~~~~~~~~~~~~g~~~~~~~~~~y~d~~v~e~v~~~l~~~i~ 186 (314)
T 2vef_A 107 DLVNDITGLMGDEKMPHVVAEARAQVVIMFNPVMARPQHPSSLIFPHFGFGQAFTEEELADFETLPIEELMEAFFERALA 186 (314)
T ss_dssp CEEEETTTTCSCTTHHHHHHHHTCEEEEECCHHHHCTTSTTTTTSCCCCC--CCCC--CHHHHHSCHHHHHHHHHHHHHH
T ss_pred CEEEECCCCCCChHHHHHHHHcCCCEEEEecCCCCCCCCcccccccccccccccccccccccccchHHHHHHHHHHHHHH
Confidence 7775 44332 3433321 110 001 222 234567
Q ss_pred HHHHcCCc---eeeeEEEecCCCHHHHHHHHHHHHhcC
Q psy8199 818 NVRNVGIN---ICCGGIIGLSESRDQRAELIFQLANLN 852 (965)
Q Consensus 818 ~~~~~Gi~---v~~~~i~Gl~et~ed~~~~l~~l~~l~ 852 (965)
.+.++|++ +...--+|++-|.++-.+.++.++++.
T Consensus 187 ~a~~~GI~~~~IilDPGiGF~kt~~~nl~ll~~l~~l~ 224 (314)
T 2vef_A 187 RAAEAGIAPENILLDPGIGFGLTKKENLLLLRDLDKLH 224 (314)
T ss_dssp HHHHHTCCGGGEEEECCTTSSCCHHHHHHHHHTHHHHH
T ss_pred HHHHcCCChhhEEEeCCCCcccchHHHHHHHHHHHHhh
Confidence 78889993 444444455688887777777777654
|
| >1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A | Back alignment and structure |
|---|
Probab=91.25 E-value=1.9 Score=43.27 Aligned_cols=194 Identities=15% Similarity=0.153 Sum_probs=105.6
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEe--eccC-CCCcccHHHHHHHHHHHHhc-CcEeE--EecCCCCHHHHHHHHHhCCCeE
Q psy8199 716 SIESVITAAQKAKSDGATRFCMG--AAWR-ELKDRDLDNIENMICEVKKI-GLETC--LTLGMLNENQAYRLKKVGLDYY 789 (965)
Q Consensus 716 ~~eei~~~~~~~~~~g~~~i~l~--~g~~-~~~~~~~~~~~~~~~~i~~~-~~~i~--~~~~~~~~e~l~~Lk~aG~~~i 789 (965)
+...+.+.++.+.+.|++.+.+. .|.+ +..... .+.++.+++. ...+. +-... ..+.++.+.++|++.+
T Consensus 17 d~~~l~~~i~~~~~~Gad~i~l~i~Dg~fv~~~~~~----~~~~~~lr~~~~~~~~v~lmv~d-~~~~i~~~~~agad~v 91 (228)
T 1h1y_A 17 DFANLAAEADRMVRLGADWLHMDIMDGHFVPNLTIG----APVIQSLRKHTKAYLDCHLMVTN-PSDYVEPLAKAGASGF 91 (228)
T ss_dssp CGGGHHHHHHHHHHTTCSEEEEEEEBSSSSSCBCBC----HHHHHHHHTTCCSEEEEEEESSC-GGGGHHHHHHHTCSEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEecCCcCcchhhC----HHHHHHHHhhcCCcEEEEEEecC-HHHHHHHHHHcCCCEE
Confidence 45566667777778898876554 4432 211112 2555556652 22222 22211 2446888899999999
Q ss_pred eccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhc--CCCCCceeeccccccC
Q psy8199 790 NHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANL--NPYPESVPINNLVQIK 867 (965)
Q Consensus 790 ~i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l--~~~~~~i~~~~~~P~~ 867 (965)
.+-.+.+++. +.+.++.+++.|+.+. +.+. +.|..+.+ +.+.+. + .+.+.+....|
T Consensus 92 ~vH~~~~~~~------------~~~~~~~i~~~g~~ig--v~~~-p~t~~e~~---~~~~~~~~~--~d~vl~~sv~p-- 149 (228)
T 1h1y_A 92 TFHIEVSRDN------------WQELIQSIKAKGMRPG--VSLR-PGTPVEEV---FPLVEAENP--VELVLVMTVEP-- 149 (228)
T ss_dssp EEEGGGCTTT------------HHHHHHHHHHTTCEEE--EEEC-TTSCGGGG---HHHHHSSSC--CSEEEEESSCT--
T ss_pred EECCCCcccH------------HHHHHHHHHHcCCCEE--EEEe-CCCCHHHH---HHHHhcCCC--CCEEEEEeecC--
Confidence 7776553211 1456667778887765 3332 34443333 333443 5 68887776655
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeCCccccCCCCCChhhHHHHH
Q psy8199 868 GTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLLK 945 (965)
Q Consensus 868 gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~~~ 945 (965)
|+-=.... ...++.+...|...++..+-+..+-+. +.-..++.+|||.+++|..+.... ++.+..+.++
T Consensus 150 g~~g~~~~----~~~l~~i~~~~~~~~~~pi~v~GGI~~---~ni~~~~~aGaD~vvvGsai~~~~--d~~~~~~~l~ 218 (228)
T 1h1y_A 150 GFGGQKFM----PEMMEKVRALRKKYPSLDIEVDGGLGP---STIDVAASAGANCIVAGSSIFGAA--EPGEVISALR 218 (228)
T ss_dssp TCSSCCCC----GGGHHHHHHHHHHCTTSEEEEESSCST---TTHHHHHHHTCCEEEESHHHHTSS--CHHHHHHHHH
T ss_pred CCCcccCC----HHHHHHHHHHHHhcCCCCEEEECCcCH---HHHHHHHHcCCCEEEECHHHHCCC--CHHHHHHHHH
Confidence 33212222 223344455566665555555555433 223345778999999998664332 3555555444
|
| >1hg3_A Triosephosphate isomerase; thermostability, tetrameric; 2.7A {Pyrococcus woesei} SCOP: c.1.1.1 | Back alignment and structure |
|---|
Probab=91.03 E-value=12 Score=37.18 Aligned_cols=131 Identities=13% Similarity=0.127 Sum_probs=81.1
Q ss_pred HHHHHHhCCCeEeccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCc
Q psy8199 778 AYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPES 857 (965)
Q Consensus 778 l~~Lk~aG~~~i~i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~ 857 (965)
...++++|++.+.++.-- + ...+.+..+-++.++++|+.+ |+=.||+.|. +.+..++ +..
T Consensus 81 ~~~l~~~Ga~~Vllghse--------R-R~~~~e~~~k~~~A~~~GL~~----ivcVge~~e~-----~~~~~~~--~~i 140 (225)
T 1hg3_A 81 PEAVKEAGAVGTLLNHSE--------N-RMILADLEAAIRRAEEVGLMT----MVCSNNPAVS-----AAVAALN--PDY 140 (225)
T ss_dssp HHHHHHTTCCEEEESCGG--------G-CCBHHHHHHHHHHHHHHTCEE----EEEESSHHHH-----HHHHTTC--CSE
T ss_pred HHHHHHcCCCEEEECcch--------h-cCCHHHHHHHHHHHHHCCCEE----EEEeCCHHHH-----HHHhcCC--CCE
Confidence 888999999999998511 0 122345677788899999854 3335676665 3345666 554
Q ss_pred eeeccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeCCccccC
Q psy8199 858 VPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTT 932 (965)
Q Consensus 858 i~~~~~~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~~t~ 932 (965)
|.+++.-- -||-..- ...++++.-++.+..|.+.++..+ +..+-... .+....+...|+|++.+|+..+..
T Consensus 141 Iayep~wa-iGtG~~v-~t~~~d~~~~~~~~ir~~~~~~~i-lyggsV~~-~n~~~~~~~~~vDG~LVG~a~l~a 211 (225)
T 1hg3_A 141 VAVEPPEL-IGTGIPV-SKAKPEVITNTVELVKKVNPEVKV-LCGAGIST-GEDVKKAIELGTVGVLLASGVTKA 211 (225)
T ss_dssp EEECCTTT-TTTSCCT-TTSCTHHHHHHHHHHHHHCTTSEE-EEESSCCS-HHHHHHHHHTTCSEEEESHHHHTC
T ss_pred EEEeChhh-hccCCCC-CCCChhHHHHHHHHHHhccCCCEE-EEeCCCCc-HHHHHHHHhCCCCEEEeCHHHHCC
Confidence 44442111 2442111 245777788888888988766533 33333232 344445567999999999976554
|
| >2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=90.97 E-value=2.1 Score=42.62 Aligned_cols=195 Identities=13% Similarity=0.098 Sum_probs=98.7
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEee--ccCCCCcccHHHHHHHHHHHHhc-CcEeEEecCCCCH-HHHHHHHHhCCCeEe
Q psy8199 715 LSIESVITAAQKAKSDGATRFCMGA--AWRELKDRDLDNIENMICEVKKI-GLETCLTLGMLNE-NQAYRLKKVGLDYYN 790 (965)
Q Consensus 715 ~~~eei~~~~~~~~~~g~~~i~l~~--g~~~~~~~~~~~~~~~~~~i~~~-~~~i~~~~~~~~~-e~l~~Lk~aG~~~i~ 790 (965)
.++..+.+.++.+.+.|++.+++.. |..+.. ...-.+.++++++. +..+.+.....+. +.++.+.++|++.+.
T Consensus 13 ~D~~~~~~~~~~~~~~G~~~i~~~~~dg~~~~~---~~~g~~~i~~i~~~~~~~~~v~l~v~d~~~~i~~~~~~gad~v~ 89 (220)
T 2fli_A 13 ADYANFASELARIEETDAEYVHIDIMDGQFVPN---ISFGADVVASMRKHSKLVFDCHLMVVDPERYVEAFAQAGADIMT 89 (220)
T ss_dssp SCGGGHHHHHHHHHHTTCCEEEEEEEBSSSSSC---BCBCHHHHHHHHTTCCSEEEEEEESSSGGGGHHHHHHHTCSEEE
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEeecCCCCCc---cccCHHHHHHHHHhCCCCEEEEEeecCHHHHHHHHHHcCCCEEE
Confidence 4556667777777788988876653 432211 11114555556653 5555554443343 356999999999998
Q ss_pred ccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCC
Q psy8199 791 HNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTP 870 (965)
Q Consensus 791 i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~ 870 (965)
+..+.. +...+.++.+++.|..+...+ ...|..+..+ .+....+.+-+....| |+.
T Consensus 90 vh~~~~-------------~~~~~~~~~~~~~g~~i~~~~---~~~t~~e~~~------~~~~~~d~vl~~~~~~--g~~ 145 (220)
T 2fli_A 90 IHTEST-------------RHIHGALQKIKAAGMKAGVVI---NPGTPATALE------PLLDLVDQVLIMTVNP--GFG 145 (220)
T ss_dssp EEGGGC-------------SCHHHHHHHHHHTTSEEEEEE---CTTSCGGGGG------GGTTTCSEEEEESSCT--TCS
T ss_pred EccCcc-------------ccHHHHHHHHHHcCCcEEEEE---cCCCCHHHHH------HHHhhCCEEEEEEECC--CCc
Confidence 765332 112345556667776643322 2344443322 1111145564433333 322
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCC----CCceeccccccccchhhHHHHhhcCccEEeeCCccccCCCCCChhhHHHHH
Q psy8199 871 LYGSSILDPLEFIRTIAVARITMP----TSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLLK 945 (965)
Q Consensus 871 l~~~~~~~~~~~~~~ia~~R~~lp----~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~~~ 945 (965)
=....+...++ ++..|...+ +..+-+..+-.. .+.. .+..+||+++++|..+ +.. .++.+..+.++
T Consensus 146 g~~~~~~~~~~----i~~~~~~~~~~~~~~~i~v~GGI~~--~~~~-~~~~~Gad~vvvGsai-~~~-~d~~~a~~~~~ 215 (220)
T 2fli_A 146 GQAFIPECLEK----VATVAKWRDEKGLSFDIEVDGGVDN--KTIR-ACYEAGANVFVAGSYL-FKA-SDLVSQVQTLR 215 (220)
T ss_dssp SCCCCGGGHHH----HHHHHHHHHHTTCCCEEEEESSCCT--TTHH-HHHHHTCCEEEESHHH-HTS-SCHHHHHHHHH
T ss_pred ccccCHHHHHH----HHHHHHHHHhcCCCceEEEECcCCH--HHHH-HHHHcCCCEEEEChHH-hCC-CCHHHHHHHHH
Confidence 11112212222 222333332 333445544432 3333 3578899999999866 443 24565555543
|
| >4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3} | Back alignment and structure |
|---|
Probab=90.86 E-value=2.2 Score=42.61 Aligned_cols=162 Identities=12% Similarity=0.072 Sum_probs=101.6
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHhc--CcEeEEecCCCCHHHHHHHHHhCCCeEec
Q psy8199 714 ILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI--GLETCLTLGMLNENQAYRLKKVGLDYYNH 791 (965)
Q Consensus 714 ~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~--~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i 791 (965)
..++++.++.++.+.+.|++-+-+..-. + .-.+.++.+++. .+.+.. ...++.+.++...++|.+.+..
T Consensus 42 ~~~~~~a~~~a~al~~gGi~~iEvt~~t-~-------~a~e~I~~l~~~~~~~~iGa-GTVlt~~~a~~Ai~AGA~fIvs 112 (232)
T 4e38_A 42 IDNAEDIIPLGKVLAENGLPAAEITFRS-D-------AAVEAIRLLRQAQPEMLIGA-GTILNGEQALAAKEAGATFVVS 112 (232)
T ss_dssp CSSGGGHHHHHHHHHHTTCCEEEEETTS-T-------THHHHHHHHHHHCTTCEEEE-ECCCSHHHHHHHHHHTCSEEEC
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEeCCC-C-------CHHHHHHHHHHhCCCCEEeE-CCcCCHHHHHHHHHcCCCEEEe
Confidence 3568899999999999999988884331 1 123555555542 344433 3467999999999999988754
Q ss_pred cCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCC
Q psy8199 792 NLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPL 871 (965)
Q Consensus 792 ~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l 871 (965)
.. .+ .+.++.++++|+.+..+.. |..|+... .+++ .+.+.++ | ..+
T Consensus 113 P~-~~----------------~~vi~~~~~~gi~~ipGv~-----TptEi~~A----~~~G--ad~vK~F---P--a~~- 158 (232)
T 4e38_A 113 PG-FN----------------PNTVRACQEIGIDIVPGVN-----NPSTVEAA----LEMG--LTTLKFF---P--AEA- 158 (232)
T ss_dssp SS-CC----------------HHHHHHHHHHTCEEECEEC-----SHHHHHHH----HHTT--CCEEEEC---S--TTT-
T ss_pred CC-CC----------------HHHHHHHHHcCCCEEcCCC-----CHHHHHHH----HHcC--CCEEEEC---c--Ccc-
Confidence 31 11 3556778888988766543 77766654 5677 7888763 3 221
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeCCcc
Q psy8199 872 YGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKL 929 (965)
Q Consensus 872 ~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~ 929 (965)
.... ..+...+--+|+..+-..++-. .+.....+.+|+...+.|..+
T Consensus 159 -----~gG~---~~lkal~~p~p~ip~~ptGGI~---~~n~~~~l~aGa~~~vgGs~l 205 (232)
T 4e38_A 159 -----SGGI---SMVKSLVGPYGDIRLMPTGGIT---PSNIDNYLAIPQVLACGGTWM 205 (232)
T ss_dssp -----TTHH---HHHHHHHTTCTTCEEEEBSSCC---TTTHHHHHTSTTBCCEEECGG
T ss_pred -----ccCH---HHHHHHHHHhcCCCeeeEcCCC---HHHHHHHHHCCCeEEEECchh
Confidence 1122 3344445567766444433332 233345588999887777754
|
| >1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6 | Back alignment and structure |
|---|
Probab=90.84 E-value=9.4 Score=41.05 Aligned_cols=181 Identities=13% Similarity=0.075 Sum_probs=113.5
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEeeccCCC-----C--------------------cccHHHHHHHHHHHHhcCcEeEEec
Q psy8199 716 SIESVITAAQKAKSDGATRFCMGAAWREL-----K--------------------DRDLDNIENMICEVKKIGLETCLTL 770 (965)
Q Consensus 716 ~~eei~~~~~~~~~~g~~~i~l~~g~~~~-----~--------------------~~~~~~~~~~~~~i~~~~~~i~~~~ 770 (965)
|.|...+.++.+++.|++-+-++...... . ..+.+.+.++.+..++.|+.+.+++
T Consensus 42 sle~A~~li~~Ak~aGAdavKfQ~~k~~tl~s~~~~~fq~~~~~~~~~ye~~~~~~l~~e~~~~L~~~~~~~Gi~~~stp 121 (385)
T 1vli_A 42 KLDQAFALIDAAAEAGADAVKFQMFQADRMYQKDPGLYKTAAGKDVSIFSLVQSMEMPAEWILPLLDYCREKQVIFLSTV 121 (385)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEECCBCGGGGTSCCC---------CCCHHHHGGGBSSCGGGHHHHHHHHHHTTCEEECBC
T ss_pred cHHHHHHHHHHHHHhCCCEEeeeeeccCcccCcchhhhccCCCCCccHHHHHHhcCCCHHHHHHHHHHHHHcCCcEEEcc
Confidence 68899999999999999999887643211 0 1234555555555556788777554
Q ss_pred CCCCHHHHHHHHHhCCCeEeccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHh
Q psy8199 771 GMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLAN 850 (965)
Q Consensus 771 ~~~~~e~l~~Lk~aG~~~i~i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~ 850 (965)
.+.+.++.|.+.|++.+-|+=-. + .....++.+.+.|-++- +=-|+ -|.+|+...++++++
T Consensus 122 --fD~~svd~l~~~~vd~~KIgS~~-------~-------~N~pLL~~va~~gKPVi--LStGm-aTl~Ei~~Ave~i~~ 182 (385)
T 1vli_A 122 --CDEGSADLLQSTSPSAFKIASYE-------I-------NHLPLLKYVARLNRPMI--FSTAG-AEISDVHEAWRTIRA 182 (385)
T ss_dssp --CSHHHHHHHHTTCCSCEEECGGG-------T-------TCHHHHHHHHTTCSCEE--EECTT-CCHHHHHHHHHHHHT
T ss_pred --CCHHHHHHHHhcCCCEEEECccc-------c-------cCHHHHHHHHhcCCeEE--EECCC-CCHHHHHHHHHHHHH
Confidence 47889999988888888776210 0 12455666666676652 23344 499999999999999
Q ss_pred cCCCCCceee-ccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccc-hhhHHHHhhcCccEEeeCCc
Q psy8199 851 LNPYPESVPI-NNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMG-ETTQAFCFLAGANSIFYGDK 928 (965)
Q Consensus 851 l~~~~~~i~~-~~~~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~-~~~~~~~l~~Gan~~~~g~~ 928 (965)
.+ ...|.+ ....-+| ||.+. --++.+...+..+|...+-.+.. ..| ..+...|+.+||+ +++..
T Consensus 183 ~G--n~~iiLlhc~s~YP-tp~~~-------~nL~aI~~Lk~~f~~lpVG~SdH--t~G~~~~~~AAvAlGA~--iIEkH 248 (385)
T 1vli_A 183 EG--NNQIAIMHCVAKYP-APPEY-------SNLSVIPMLAAAFPEAVIGFSDH--SEHPTEAPCAAVRLGAK--LIEKH 248 (385)
T ss_dssp TT--CCCEEEEEECSSSS-CCGGG-------CCTTHHHHHHHHSTTSEEEEEEC--CSSSSHHHHHHHHTTCS--EEEEE
T ss_pred CC--CCcEEEEeccCCCC-CChhh-------cCHHHHHHHHHHcCCCCEEeCCC--CCCchHHHHHHHHcCCC--EEEeC
Confidence 87 433333 3222222 12222 23556677777775443322211 335 6677889999999 67755
Q ss_pred c
Q psy8199 929 L 929 (965)
Q Consensus 929 ~ 929 (965)
+
T Consensus 249 f 249 (385)
T 1vli_A 249 F 249 (385)
T ss_dssp B
T ss_pred C
Confidence 5
|
| >1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A* | Back alignment and structure |
|---|
Probab=90.67 E-value=2.4 Score=44.89 Aligned_cols=206 Identities=11% Similarity=0.058 Sum_probs=110.0
Q ss_pred ccHHHHHHHHHHHH-hc--CcEeEEecCCCC----HHHHHHHHHhCCC-eEeccCCC-CHHHHhcccCCCCHHHHHHHHH
Q psy8199 747 RDLDNIENMICEVK-KI--GLETCLTLGMLN----ENQAYRLKKVGLD-YYNHNLDT-SPKLYGDIISTRDYENRLNTLK 817 (965)
Q Consensus 747 ~~~~~~~~~~~~i~-~~--~~~i~~~~~~~~----~e~l~~Lk~aG~~-~i~i~~es-~~~~~~~i~~~~~~~~~~~~i~ 817 (965)
...+.+.+.++..+ .. +..+..+....+ .+.++.+.++|+| .+.+++-+ .......+ ..+++...+.++
T Consensus 74 ~g~~~~~~~~~~~~~~~~~~~p~~~~i~g~~~~~~~~~a~~~~~~g~d~~iein~~~P~~~g~~~~--g~~~e~~~~iv~ 151 (311)
T 1jub_A 74 LGFDYYLDYVLKNQKENAQEGPIFFSIAGMSAAENIAMLKKIQESDFSGITELNLSCPNVPGEPQL--AYDFEATEKLLK 151 (311)
T ss_dssp SCHHHHHHHHHHHHHHTCSSSCCEEEECCSSHHHHHHHHHHHHHSCCCSEEEEESCCCCSSSCCCG--GGCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhcCCCCCEEEEcCCCCHHHHHHHHHHHHhcCCCeEEEEeccCCCCCCcccc--cCCHHHHHHHHH
Confidence 34566666665544 23 444444444333 3345667788888 88888754 22100111 236777788888
Q ss_pred HHHHc-CCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccccc-----c--CCCCCCC-------C-CCCCHHH
Q psy8199 818 NVRNV-GINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQ-----I--KGTPLYG-------S-SILDPLE 881 (965)
Q Consensus 818 ~~~~~-Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P-----~--~gT~l~~-------~-~~~~~~~ 881 (965)
.+++. ++++..- +..+-+.++..+.++.+.+.+ .+.|.+..... . .+++... . .+.....
T Consensus 152 ~vr~~~~~Pv~vK--i~~~~~~~~~~~~a~~~~~~G--~d~i~v~~~~~~g~~i~~~~~~~~~~~~~~~gG~sg~~~~~~ 227 (311)
T 1jub_A 152 EVFTFFTKPLGVK--LPPYFDLVHFDIMAEILNQFP--LTYVNSVNSIGNGLFIDPEAESVVIKPKDGFGGIGGAYIKPT 227 (311)
T ss_dssp HHTTTCCSCEEEE--ECCCCSHHHHHHHHHHHTTSC--CCEEEECCCEEEEECEETTTTEESCSGGGGEEEEESGGGHHH
T ss_pred HHHHhcCCCEEEE--ECCCCCHHHHHHHHHHHHHcC--CcEEEecCCCCcCceeccCCCCcccccCCCCCccccccccHH
Confidence 88875 5555433 223347788888888888888 78877654321 0 0111100 0 1111223
Q ss_pred HHHHHHHHHHHCC-CCceeccccccccchhhHHHHhhcCccEEeeCCcccc-CCCC---CChhhHHHHHHcCCCcchhhh
Q psy8199 882 FIRTIAVARITMP-TSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLT-TDNT---KTNDDSKLLKKLGINTRNIKI 956 (965)
Q Consensus 882 ~~~~ia~~R~~lp-~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~~t-~~~~---~~~~~~~~~~~~g~~~~~~~~ 956 (965)
.++.+...+..++ +..+ +..+-.....+ ...++.+||+.+++|..++. .+.. =.++....+++.|+. +.+
T Consensus 228 ~~~~i~~v~~~~~~~ipv-i~~GGI~~~~d-a~~~l~~GAd~V~vg~~~l~~~p~~~~~i~~~l~~~l~~~g~~---si~ 302 (311)
T 1jub_A 228 ALANVRAFYTRLKPEIQI-IGTGGIETGQD-AFEHLLCGATMLQIGTALHKEGPAIFDRIIKELEEIMNQKGYQ---SIA 302 (311)
T ss_dssp HHHHHHHHHTTSCTTSEE-EEESSCCSHHH-HHHHHHHTCSEEEECHHHHHHCTHHHHHHHHHHHHHHHHHTCC---SGG
T ss_pred HHHHHHHHHHhcCCCCCE-EEECCCCCHHH-HHHHHHcCCCEEEEchHHHhcCcHHHHHHHHHHHHHHHHcCCC---CHH
Confidence 3556666666664 3333 22222232233 34557899999999987664 3210 012344556666764 344
Q ss_pred HHhhhhc
Q psy8199 957 KMKNNIK 963 (965)
Q Consensus 957 ~~~~~~~ 963 (965)
+++-.++
T Consensus 303 e~~g~~~ 309 (311)
T 1jub_A 303 DFHGKLK 309 (311)
T ss_dssp GTTTCCB
T ss_pred HHhChhh
Confidence 4444443
|
| >3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A | Back alignment and structure |
|---|
Probab=90.21 E-value=0.34 Score=49.64 Aligned_cols=75 Identities=15% Similarity=0.013 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHh-cCcEeEEecCCCCHHHHHHHHHhCCCeEeccCCC
Q psy8199 719 SVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDT 795 (965)
Q Consensus 719 ei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~-~~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~~es 795 (965)
+..+.++.+.+.|+..+++.+-....... ..-.++++.+++ .++.+....|..+.+.++.+.++|++.+.++-..
T Consensus 36 ~~~~~a~~~~~~G~~~i~v~d~~~~~~~~--~~~~~~i~~i~~~~~ipvi~~Ggi~~~~~~~~~l~~Gad~V~ig~~~ 111 (247)
T 3tdn_A 36 LLRDWVVEVEKRGAGEILLTSIDRDGTKS--GYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLRGADKVSINTAA 111 (247)
T ss_dssp EHHHHHHHHHHTTCSEEEEEETTTTTCSS--CCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHTTCSEECCSHHH
T ss_pred CHHHHHHHHHHcCCCEEEEEecCcccCCC--cccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCeeehhhHH
Confidence 34455666678899999987653211111 112456667775 6889999999999999999999999999998543
|
| >3chv_A Prokaryotic domain of unknown function (DUF849) W barrel fold; TIM barrel fold, structural genomics, joint center for struc genomics; HET: MSE; 1.45A {Silicibacter pomeroyi dss-3} PDB: 3fa5_A | Back alignment and structure |
|---|
Probab=90.18 E-value=18 Score=37.11 Aligned_cols=230 Identities=11% Similarity=0.052 Sum_probs=132.9
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEeeccC-CCCcccHHHHHHHHHHHHhc--CcEeEEecCCC---CHHHHHHHHHhCCC
Q psy8199 714 ILSIESVITAAQKAKSDGATRFCMGAAWR-ELKDRDLDNIENMICEVKKI--GLETCLTLGML---NENQAYRLKKVGLD 787 (965)
Q Consensus 714 ~~~~eei~~~~~~~~~~g~~~i~l~~g~~-~~~~~~~~~~~~~~~~i~~~--~~~i~~~~~~~---~~e~l~~Lk~aG~~ 787 (965)
..+++||.+.+.+..+.|+.-+++-.=.. .-...+.+.|.+++..|++. ++-+.++.|.. .++.+..+ +...+
T Consensus 30 PvTpeEia~~A~~~~~AGAaivHlH~Rd~~G~ps~d~~~~~e~~~~IR~~~pd~ii~~TTgg~~~~~eeR~~~~-~~~Pe 108 (284)
T 3chv_A 30 PITVSEQVESTQEAFEAGAAIAHCHVRNDDGTPSSDPDRFARLTEGLHTHCPGMIVQFSTGGRSGAGQARGGML-PLKPD 108 (284)
T ss_dssp CCSHHHHHHHHHHHHHHTCCEEEECEECTTSCEECCHHHHHHHHHHHHHHSTTCEEEECCCTTTCCGGGGGTTG-GGCCS
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEeeecCCCCCcCCCHHHHHHHHHHHHHhCCCeEEEeCCCCCCCCHHHHHHhh-hcCCC
Confidence 38999999999999999999888854321 22356789999999999963 66666654332 23444444 45667
Q ss_pred eEeccCCC-CHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCC--CCCceeecccc
Q psy8199 788 YYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNP--YPESVPINNLV 864 (965)
Q Consensus 788 ~i~i~~es-~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~--~~~~i~~~~~~ 864 (965)
..+++.-| +-. ..+. ..+++...+.++.+++.|++... .+| +..++.. +..+.+-+. .+.++.+. +
T Consensus 109 ~aSl~~Gs~Nf~--~~v~-~n~~~~~~~~~~~~~e~Gv~pE~-e~f----d~g~l~~-~~~l~~~Gll~~p~~~~~v--l 177 (284)
T 3chv_A 109 MASLSVGSNNFP--SRVY-ENPPDLVDWLAAQMRSYRVTPEI-EAF----DLSHILR-AIDMHGRGLLYGKLYVQFV--M 177 (284)
T ss_dssp EEEECCSCEECS--SSEE-CCCHHHHHHHHHHHHHHTCEEEE-EES----SHHHHHH-HHHHHHTTCSCSSCEEEEE--E
T ss_pred EEEecCcccccC--Cccc-cCCHHHHHHHHHHHHHcCCEEEE-EEE----CHHHHHH-HHHHHHcCCCCCCceEEEE--E
Confidence 77777766 311 1122 35788999999999999998764 344 3333443 444444442 12222221 1
Q ss_pred ccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccE-EeeCCccccCCCC----C---
Q psy8199 865 QIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANS-IFYGDKLLTTDNT----K--- 936 (965)
Q Consensus 865 P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~-~~~g~~~~t~~~~----~--- 936 (965)
=.++ -.+.+++.+.-++..+.--.|.... ..++.....-.+...++..|-+. +=.+|++.-..|. |
T Consensus 178 Gv~~-----g~~~~~~~L~~~~~~~p~~~~~~~w-s~~g~Gr~q~p~~~~A~~~GGhvRVGlEDnl~~~~G~~A~sNa~l 251 (284)
T 3chv_A 178 GVKN-----AMPADREVFDFYVRMMRTRAPQAEW-CAAGIGANQLTVNEWAIAAGGHTRTGLEDNIRLDRQTLAPSNAAL 251 (284)
T ss_dssp CCTT-----SCCCCHHHHHHHHHHHHHHCTTSEE-EEEECTTHHHHHHHHHHHTTCEEEESTTTCCBSSSSCBCCCHHHH
T ss_pred ecCC-----CCCCCHHHHHHHHHhccCCCCCceE-EEEecCcchhHHHHHHHHcCCCeEEecccccCCCCCCCCCCHHHH
Confidence 1222 1346777777776554221111211 11111111112444577888883 2244665545442 1
Q ss_pred ChhhHHHHHHcCCCcchhhhHHhhhh
Q psy8199 937 TNDDSKLLKKLGINTRNIKIKMKNNI 962 (965)
Q Consensus 937 ~~~~~~~~~~~g~~~~~~~~~~~~~~ 962 (965)
+++..++++++|+.+ -+.+|.++.|
T Consensus 252 V~~~~~i~~~lgr~v-Atp~eAR~iL 276 (284)
T 3chv_A 252 VRRSVELCDKYQRPV-ASWQQAREIL 276 (284)
T ss_dssp HHHHHHHHHHTTCCB-CCHHHHHHHT
T ss_pred HHHHHHHHHHcCCCC-CCHHHHHHHc
Confidence 345677778999987 4555555544
|
| >1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=89.94 E-value=2.2 Score=42.59 Aligned_cols=198 Identities=14% Similarity=0.100 Sum_probs=106.4
Q ss_pred CCHHHHHHHHHHHHHCCCCE--EEEeeccCCC-CcccHHHHHHHHHHHHhc--CcEeEEecCCCCHH-HHHHHHHhCCCe
Q psy8199 715 LSIESVITAAQKAKSDGATR--FCMGAAWREL-KDRDLDNIENMICEVKKI--GLETCLTLGMLNEN-QAYRLKKVGLDY 788 (965)
Q Consensus 715 ~~~eei~~~~~~~~~~g~~~--i~l~~g~~~~-~~~~~~~~~~~~~~i~~~--~~~i~~~~~~~~~e-~l~~Lk~aG~~~ 788 (965)
.+.-.+.++++.+.+.|++. +.+..|.+.+ ..... +.++.+++. ...+-++.-..+++ .++.+.+ .+.
T Consensus 15 ~D~~~l~~~i~~~~~~g~d~iHvDvmDg~fvpn~t~G~----~~v~~lr~~~p~~~~dvhLmv~dp~~~i~~~~~--Ad~ 88 (227)
T 1tqx_A 15 SNISKLAEETQRMESLGAEWIHLDVMDMHFVPNLSFGP----PVINNLKKYTKSIFFDVHLMVEYPEKYVPLLKT--SNQ 88 (227)
T ss_dssp SCGGGHHHHHHHHHHTTCSEEEEEEEBSSSSSCBCCCH----HHHHHHGGGCSSCEEEEEEESSCGGGGGGGCTT--SSE
T ss_pred CChhhHHHHHHHHHHcCCCEEEEEEEeCCcCcchhcCH----HHHHHHHHhCCCCcEEEEEEEcCHHHHHHHHHh--CCE
Confidence 34556666777777778876 4555565432 22222 456666653 34454444333333 3444444 677
Q ss_pred EeccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccccccCC
Q psy8199 789 YNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKG 868 (965)
Q Consensus 789 i~i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~g 868 (965)
+.+-.|+.++ +..+.++..+.+++.|.++...+ -+.|..+. ++.+.+++ .++.|-++...| |
T Consensus 89 itvH~ea~~~---------~~~~~i~~~~~i~~~G~k~gval---np~tp~~~---~~~~l~~g-~~D~VlvmsV~p--G 150 (227)
T 1tqx_A 89 LTFHFEALNE---------DTERCIQLAKEIRDNNLWCGISI---KPKTDVQK---LVPILDTN-LINTVLVMTVEP--G 150 (227)
T ss_dssp EEEEGGGGTT---------CHHHHHHHHHHHHTTTCEEEEEE---CTTSCGGG---GHHHHTTT-CCSEEEEESSCT--T
T ss_pred EEEeecCCcc---------CHHHHHHHHHHHHHcCCeEEEEe---CCCCcHHH---HHHHhhcC-CcCEEEEeeecc--C
Confidence 7777666311 13333333338899998875533 23444332 33334432 167887775544 4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeCCccccCCCCCChhhHHHHH
Q psy8199 869 TPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLLK 945 (965)
Q Consensus 869 T~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~~~ 945 (965)
.-=+... ...++.+...|.+.++..|-+.++-+ .+....+..+|||.+++|..+ +... ++.+..+.++
T Consensus 151 f~gq~f~----~~~l~ki~~lr~~~~~~~I~VdGGI~---~~ti~~~~~aGAd~~V~GsaI-f~~~-d~~~~i~~l~ 218 (227)
T 1tqx_A 151 FGGQSFM----HDMMGKVSFLRKKYKNLNIQVDGGLN---IETTEISASHGANIIVAGTSI-FNAE-DPKYVIDTMR 218 (227)
T ss_dssp CSSCCCC----GGGHHHHHHHHHHCTTCEEEEESSCC---HHHHHHHHHHTCCEEEESHHH-HTCS-SHHHHHHHHH
T ss_pred CCCcccc----hHHHHHHHHHHHhccCCeEEEECCCC---HHHHHHHHHcCCCEEEEeHHH-hCCC-CHHHHHHHHH
Confidence 3211222 23344445566666655565555443 334456689999999999865 4322 4555555554
|
| >1vs1_A 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha)8 barrel, transferase; HET: PEP; 2.30A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=89.89 E-value=9.8 Score=39.10 Aligned_cols=184 Identities=15% Similarity=0.102 Sum_probs=103.3
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEeeccCCCCc-----ccHHHHHHHHHHHHhcCcEeEEecCCCCHHHHHHHHHhCCCeEe
Q psy8199 716 SIESVITAAQKAKSDGATRFCMGAAWRELKD-----RDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYN 790 (965)
Q Consensus 716 ~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~-----~~~~~~~~~~~~i~~~~~~i~~~~~~~~~e~l~~Lk~aG~~~i~ 790 (965)
+.+..++.++.+++.|.+-+-++..-..... ...+.+..+.+..++.|+.+.+++ .+.+.++.+.+. ++.+.
T Consensus 50 ~~e~a~~~a~~~k~~ga~~~k~~~~kprts~~~f~g~g~~gl~~l~~~~~~~Gl~~~te~--~d~~~~~~l~~~-vd~~k 126 (276)
T 1vs1_A 50 SWEQVREAALAVKEAGAHMLRGGAFKPRTSPYSFQGLGLEGLKLLRRAGDEAGLPVVTEV--LDPRHVETVSRY-ADMLQ 126 (276)
T ss_dssp CHHHHHHHHHHHHHHTCSEEECBSSCCCSSTTSCCCCTHHHHHHHHHHHHHHTCCEEEEC--CCGGGHHHHHHH-CSEEE
T ss_pred CHHHHHHHHHHHHHhCCCEEEeEEEeCCCChhhhcCCCHHHHHHHHHHHHHcCCcEEEec--CCHHHHHHHHHh-CCeEE
Confidence 6899999999999999988776654321111 123333333333345798887764 467778888888 89888
Q ss_pred ccCCC--CHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeec--ccccc
Q psy8199 791 HNLDT--SPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPIN--NLVQI 866 (965)
Q Consensus 791 i~~es--~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~--~~~P~ 866 (965)
|+--+ +. ..++.+.+.|.+| .+=-|..-|.+|+...++.+..-+ -..+.+. ...-+
T Consensus 127 Igs~~~~n~----------------~ll~~~a~~~kPV--~lk~G~~~t~~ei~~Ave~i~~~G--n~~i~L~~Rg~~~y 186 (276)
T 1vs1_A 127 IGARNMQNF----------------PLLREVGRSGKPV--LLKRGFGNTVEELLAAAEYILLEG--NWQVVLVERGIRTF 186 (276)
T ss_dssp ECGGGTTCH----------------HHHHHHHHHTCCE--EEECCTTCCHHHHHHHHHHHHHTT--CCCEEEEECCBCCS
T ss_pred ECcccccCH----------------HHHHHHHccCCeE--EEcCCCCCCHHHHHHHHHHHHHcC--CCeEEEEeCCcCCC
Confidence 88422 22 2334444556554 233333358899999999998877 3333332 11112
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccc---cccccchhhHHHHhhcCccEEeeCCcc
Q psy8199 867 KGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSA---GRKEMGETTQAFCFLAGANSIFYGDKL 929 (965)
Q Consensus 867 ~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~---~~~~~~~~~~~~~l~~Gan~~~~g~~~ 929 (965)
|+.+.+. -.++.+...|..+.-..+--+. +...+-......++..||+++|++.++
T Consensus 187 p~y~~~~-------vdl~~i~~lk~~~~lpVi~dssH~~g~~~~~~~~~~aAva~Ga~Gl~IE~H~ 245 (276)
T 1vs1_A 187 EPSTRFT-------LDVAAVAVLKEATHLPVIVDPSHPAGRRSLVPALAKAGLAAGADGLIVEVHP 245 (276)
T ss_dssp CCSSSSB-------CBHHHHHHHHHHBSSCEEECCHHHHCSGGGHHHHHHHHHHTTCSEEEEEBCS
T ss_pred CCcCcch-------hCHHHHHHHHHHhCCCEEEeCCCCCCccchHHHHHHHHHHcCCCEEEEEecC
Confidence 2222111 1233344445543111111121 111111345667888999999999875
|
| >3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A* | Back alignment and structure |
|---|
Probab=89.77 E-value=10 Score=47.55 Aligned_cols=215 Identities=13% Similarity=0.058 Sum_probs=133.4
Q ss_pred CCHHHHHHHHHHHHHC--CCCEEEEeeccC-----CCC-cccHHHHHHHHHHHHhcCcEeEEec----CCC------CHH
Q psy8199 715 LSIESVITAAQKAKSD--GATRFCMGAAWR-----ELK-DRDLDNIENMICEVKKIGLETCLTL----GML------NEN 776 (965)
Q Consensus 715 ~~~eei~~~~~~~~~~--g~~~i~l~~g~~-----~~~-~~~~~~~~~~~~~i~~~~~~i~~~~----~~~------~~e 776 (965)
++.++.++.++.+.+. |+..+-..++.. +.. ..+++.+..+.+.+.+..+...++. |.. .++
T Consensus 552 ~~~~~kl~ia~~L~~~~~G~~~lE~~Gga~~e~~~~~~~e~~~e~l~~l~~~~~~~~~~~l~R~~n~vgy~~~pd~v~~~ 631 (1150)
T 3hbl_A 552 VRTKDMINIASKTADVFKDGFSLEMWGGATFDVAYNFLKENPWERLERLRKAIPNVLFQMLLRASNAVGYKNYPDNVIHK 631 (1150)
T ss_dssp CCHHHHHHHHHHHHHHTTTCSEEEEEETTHHHHHHHTSCCCHHHHHHHHHHHCCSSEEEEEEETTTBTCSSCCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhCCCcEEeecCCceEEecccccCCCHHHHHHHHHHhCCCCeEEEEeccccccccccCCchhHHH
Confidence 7799999999998887 998888755421 112 1223333222222221222222222 211 356
Q ss_pred HHHHHHHhCCCeEeccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEe---cC------CCHHHHHHHHHH
Q psy8199 777 QAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIG---LS------ESRDQRAELIFQ 847 (965)
Q Consensus 777 ~l~~Lk~aG~~~i~i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~G---l~------et~ed~~~~l~~ 847 (965)
.++...++|++.+.+..-.++ .......++.+++.|..+...+.+- +. .+.+.+.+.++.
T Consensus 632 ~v~~a~~~Gvd~irif~~~sd-----------~~~~~~~~~~~~e~g~~~~~~i~~~~~~~~pe~~~~~~~~~~~~~a~~ 700 (1150)
T 3hbl_A 632 FVQESAKAGIDVFRIFDSLNW-----------VDQMKVANEAVQEAGKISEGTICYTGDILNPERSNIYTLEYYVKLAKE 700 (1150)
T ss_dssp HHHHHHHTTCCEEEEECTTCC-----------GGGGHHHHHHHHHTTCEEEEEEECCSCTTCTTTCSSSSHHHHHHHHHH
T ss_pred HHHHHHhCCcCEEEEEeeCCH-----------HHHHHHHHHHHHHHhhheeEEEeecccccChhhcCCCCHHHHHHHHHH
Confidence 688899999999988754342 1233567778888898776666665 21 457889999999
Q ss_pred HHhcCCCCCceeeccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceecccccc-ccchhhHHHHhhcCccEEeeC
Q psy8199 848 LANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRK-EMGETTQAFCFLAGANSIFYG 926 (965)
Q Consensus 848 l~~l~~~~~~i~~~~~~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~-~~~~~~~~~~l~~Gan~~~~g 926 (965)
+.+.+ .+.|.+. .| ....+|.++.+++...|..+ +..+.+-++-. .+.......|+.+||+.+=.-
T Consensus 701 ~~~~G--a~~i~l~------Dt----~G~~~P~~~~~lv~~l~~~~-~~~i~~H~Hnt~G~a~An~laA~~aGa~~vD~a 767 (1150)
T 3hbl_A 701 LEREG--FHILAIK------DM----AGLLKPKAAYELIGELKSAV-DLPIHLHTHDTSGNGLLTYKQAIDAGVDIIDTA 767 (1150)
T ss_dssp HHHTT--CSEEEEE------ET----TCCCCHHHHHHHHHHHHHHC-CSCEEEEECBTTSCHHHHHHHHHHTTCSEEEEB
T ss_pred HHHcC--CCeeeEc------Cc----cCCCCHHHHHHHHHHHHHhc-CCeEEEEeCCCCcHHHHHHHHHHHhCCCEEEEe
Confidence 99999 7776654 44 24468899999999888876 44455554331 222233456889999954221
Q ss_pred Ccc--ccCCCCCChhhHHHHHHcCCCcch
Q psy8199 927 DKL--LTTDNTKTNDDSKLLKKLGINTRN 953 (965)
Q Consensus 927 ~~~--~t~~~~~~~~~~~~~~~~g~~~~~ 953 (965)
..= -.++..+.++...+|+..|+.+.-
T Consensus 768 i~GlG~~~gn~~lE~lv~~L~~~g~~tgi 796 (1150)
T 3hbl_A 768 VASMSGLTSQPSANSLYYALNGFPRHLRT 796 (1150)
T ss_dssp CGGGCSBTSCCBHHHHHHHTTTSSCCBCS
T ss_pred ccccCCCCCCccHHHHHHHHHhcCCCcCc
Confidence 110 133444677888888888887543
|
| >3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=89.69 E-value=16 Score=36.42 Aligned_cols=172 Identities=10% Similarity=-0.005 Sum_probs=95.0
Q ss_pred cCCCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHh-cCcEeE-Eec----C---C--CCHHHHHHH
Q psy8199 713 KILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETC-LTL----G---M--LNENQAYRL 781 (965)
Q Consensus 713 ~~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~-~~~~i~-~~~----~---~--~~~e~l~~L 781 (965)
+..+++.+.+.++.+.+.|+..+...+ .+.++++++ .++++. .+- + . .+.+.++.+
T Consensus 31 pl~~~~~~~~~A~a~~~~Ga~~i~~~~-------------~~~i~~ir~~v~~Pvig~~k~d~~~~~~~I~~~~~~i~~~ 97 (232)
T 3igs_A 31 PLDKPEIVAAMALAAEQAGAVAVRIEG-------------IDNLRMTRSLVSVPIIGIIKRDLDESPVRITPFLDDVDAL 97 (232)
T ss_dssp TTCSHHHHHHHHHHHHHTTCSEEEEES-------------HHHHHHHHTTCCSCEEEECBCCCSSCCCCBSCSHHHHHHH
T ss_pred CCCCcchHHHHHHHHHHCCCeEEEECC-------------HHHHHHHHHhcCCCEEEEEeecCCCcceEeCccHHHHHHH
Confidence 356788999999999999998776521 234566665 455542 211 1 1 255688999
Q ss_pred HHhCCCeEeccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeec
Q psy8199 782 KKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPIN 861 (965)
Q Consensus 782 k~aG~~~i~i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~ 861 (965)
+++|+|.+.++.-. ...+ +...+.++.+++.|+.+.... .|.++. +.+.+.+ .+.|.++
T Consensus 98 ~~~Gad~V~l~~~~-------~~~p---~~l~~~i~~~~~~g~~v~~~v-----~t~eea----~~a~~~G--ad~Ig~~ 156 (232)
T 3igs_A 98 AQAGAAIIAVDGTA-------RQRP---VAVEALLARIHHHHLLTMADC-----SSVDDG----LACQRLG--ADIIGTT 156 (232)
T ss_dssp HHHTCSEEEEECCS-------SCCS---SCHHHHHHHHHHTTCEEEEEC-----CSHHHH----HHHHHTT--CSEEECT
T ss_pred HHcCCCEEEECccc-------cCCH---HHHHHHHHHHHHCCCEEEEeC-----CCHHHH----HHHHhCC--CCEEEEc
Confidence 99999999876421 0111 233455666677776554322 455544 4556778 8888654
Q ss_pred cccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeCCcc
Q psy8199 862 NLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKL 929 (965)
Q Consensus 862 ~~~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~ 929 (965)
..--.+++. ...++.+.+.++ +.. +..+-..++- .. .+--..++.+||+++++|+.+
T Consensus 157 ~~g~t~~~~---~~~~~~~~i~~l----~~~--~ipvIA~GGI-~t-~~d~~~~~~~GadgV~VGsal 213 (232)
T 3igs_A 157 MSGYTTPDT---PEEPDLPLVKAL----HDA--GCRVIAEGRY-NS-PALAAEAIRYGAWAVTVGSAI 213 (232)
T ss_dssp TTTSSSSSC---CSSCCHHHHHHH----HHT--TCCEEEESCC-CS-HHHHHHHHHTTCSEEEECHHH
T ss_pred CccCCCCCC---CCCCCHHHHHHH----Hhc--CCcEEEECCC-CC-HHHHHHHHHcCCCEEEEehHh
Confidence 221111221 122333322222 222 3323223222 22 233345578999999999865
|
| >3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=89.52 E-value=16 Score=36.33 Aligned_cols=172 Identities=13% Similarity=0.045 Sum_probs=94.8
Q ss_pred cCCCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHh-cCcEeE-Eec-------CC--CCHHHHHHH
Q psy8199 713 KILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETC-LTL-------GM--LNENQAYRL 781 (965)
Q Consensus 713 ~~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~-~~~~i~-~~~-------~~--~~~e~l~~L 781 (965)
++.+++.+.+.++.+.+.|+..+...+ .+.++++++ .++.+. ..- .. .+.+.++.+
T Consensus 31 pl~~~~~~~~~A~a~~~~Ga~~i~~~~-------------~~~i~~ir~~v~~Pvig~~k~~~~~~~~~I~~~~~~i~~~ 97 (229)
T 3q58_A 31 PMDKPEIVAAMAQAAASAGAVAVRIEG-------------IENLRTVRPHLSVPIIGIIKRDLTGSPVRITPYLQDVDAL 97 (229)
T ss_dssp TTCSHHHHHHHHHHHHHTTCSEEEEES-------------HHHHHHHGGGCCSCEEEECBCCCSSCCCCBSCSHHHHHHH
T ss_pred CCCCcchHHHHHHHHHHCCCcEEEECC-------------HHHHHHHHHhcCCCEEEEEeecCCCCceEeCccHHHHHHH
Confidence 356789999999999999999887621 234566665 455532 211 12 245678999
Q ss_pred HHhCCCeEeccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeec
Q psy8199 782 KKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPIN 861 (965)
Q Consensus 782 k~aG~~~i~i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~ 861 (965)
+++|++.+.++.-. ...+ +...+.++.+++.|+.+.... .|.++. +.+.+.+ .+.|.++
T Consensus 98 ~~aGad~I~l~~~~-------~~~p---~~l~~~i~~~~~~g~~v~~~v-----~t~eea----~~a~~~G--ad~Ig~~ 156 (229)
T 3q58_A 98 AQAGADIIAFDASF-------RSRP---VDIDSLLTRIRLHGLLAMADC-----STVNEG----ISCHQKG--IEFIGTT 156 (229)
T ss_dssp HHHTCSEEEEECCS-------SCCS---SCHHHHHHHHHHTTCEEEEEC-----SSHHHH----HHHHHTT--CSEEECT
T ss_pred HHcCCCEEEECccc-------cCCh---HHHHHHHHHHHHCCCEEEEec-----CCHHHH----HHHHhCC--CCEEEec
Confidence 99999998776421 0111 233455566667776554321 455544 4556778 8888654
Q ss_pred cccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeCCcc
Q psy8199 862 NLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKL 929 (965)
Q Consensus 862 ~~~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~ 929 (965)
..--.+++ ....++. +.++-+ +.. +..+-..++- .. .+--..++.+||+++++|+.+
T Consensus 157 ~~g~t~~~---~~~~~~~-~li~~l---~~~--~ipvIA~GGI-~t-~~d~~~~~~~GadgV~VGsai 213 (229)
T 3q58_A 157 LSGYTGPI---TPVEPDL-AMVTQL---SHA--GCRVIAEGRY-NT-PALAANAIEHGAWAVTVGSAI 213 (229)
T ss_dssp TTTSSSSC---CCSSCCH-HHHHHH---HTT--TCCEEEESSC-CS-HHHHHHHHHTTCSEEEECHHH
T ss_pred CccCCCCC---cCCCCCH-HHHHHH---HHc--CCCEEEECCC-CC-HHHHHHHHHcCCCEEEEchHh
Confidence 22111122 1122233 222222 211 3322222222 22 333345688999999999755
|
| >2p0o_A Hypothetical protein DUF871; structural genomics, TIM barrel, PF05 2, protein structure initiative, midwest center for structu genomics; 2.15A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=89.39 E-value=8.4 Score=41.16 Aligned_cols=87 Identities=9% Similarity=0.037 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHCCCCEEEEeeccCC-CCcccHHHHHHHHHHHHhcCcEeEEecC-------CCCHHHHHHHHHhCCCe
Q psy8199 717 IESVITAAQKAKSDGATRFCMGAAWRE-LKDRDLDNIENMICEVKKIGLETCLTLG-------MLNENQAYRLKKVGLDY 788 (965)
Q Consensus 717 ~eei~~~~~~~~~~g~~~i~l~~g~~~-~~~~~~~~~~~~~~~i~~~~~~i~~~~~-------~~~~e~l~~Lk~aG~~~ 788 (965)
.++..+.++.+.+.|+++++..--... ....-.+++.++++..++.++.+.+.+. -.+.+.++.|++.|++.
T Consensus 16 ~~~~~~yi~~a~~~Gf~~IFTSL~~~e~~~~~~~~~~~~l~~~a~~~g~~vi~DIsp~~l~~Lg~s~~dl~~~~~lGi~g 95 (372)
T 2p0o_A 16 TNDTIIYIKKMKALGFDGIFTSLHIPEDDTSLYRQRLTDLGAIAKAEKMKIMVDISGEALKRAGFSFDELEPLIELGVTG 95 (372)
T ss_dssp CHHHHHHHHHHHHTTCCEEEEEECCC-----CHHHHHHHHHHHHHHHTCEEEEEECHHHHHTTTCBTTBCHHHHHHTCCE
T ss_pred HHHHHHHHHHHHHCCCCEEEccCCccCCChHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHcCCCHHHHHHHHHcCCCE
Confidence 466668888889999999876443211 1122357777888888888988877332 22456788999999998
Q ss_pred EeccCCCCHHHHhcc
Q psy8199 789 YNHNLDTSPKLYGDI 803 (965)
Q Consensus 789 i~i~~es~~~~~~~i 803 (965)
+-+..--+.+....+
T Consensus 96 lRLD~Gf~~~eia~l 110 (372)
T 2p0o_A 96 LRMDYGITIEQMAHA 110 (372)
T ss_dssp EEECSSCCHHHHHHH
T ss_pred EEEcCCCCHHHHHHH
Confidence 887743354444444
|
| >3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A* | Back alignment and structure |
|---|
Probab=89.34 E-value=20 Score=38.82 Aligned_cols=202 Identities=12% Similarity=0.084 Sum_probs=114.6
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEeeccCCC-----CcccHHHHHHHHHHHHhcCcEeEEecCCCCHHHHHHHHHhCCCeEe
Q psy8199 716 SIESVITAAQKAKSDGATRFCMGAAWREL-----KDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYN 790 (965)
Q Consensus 716 ~~eei~~~~~~~~~~g~~~i~l~~g~~~~-----~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~e~l~~Lk~aG~~~i~ 790 (965)
|.+...+.++.+++.|+.-+.++..-... ...+.+.+..+.+..++.|+.+.+++ .+.+.++.+.+. ++.+.
T Consensus 154 s~e~a~~~a~~~k~aGa~~vk~q~fkprts~~~f~gl~~egl~~L~~~~~~~Gl~~~te~--~d~~~~~~l~~~-vd~lk 230 (385)
T 3nvt_A 154 SYEQVAAVAESIKAKGLKLIRGGAFKPRTSPYDFQGLGLEGLKILKRVSDEYGLGVISEI--VTPADIEVALDY-VDVIQ 230 (385)
T ss_dssp CHHHHHHHHHHHHHTTCCEEECBSSCCCSSTTSCCCCTHHHHHHHHHHHHHHTCEEEEEC--CSGGGHHHHTTT-CSEEE
T ss_pred CHHHHHHHHHHHHHcCCCeEEcccccCCCChHhhcCCCHHHHHHHHHHHHHcCCEEEEec--CCHHHHHHHHhh-CCEEE
Confidence 68999999999999999988776642110 01234444433333345898887764 467778888777 88888
Q ss_pred ccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceee-cc-ccccCC
Q psy8199 791 HNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPI-NN-LVQIKG 868 (965)
Q Consensus 791 i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~-~~-~~P~~g 868 (965)
++--.. . + ...++.+.+.|.+| .+=-|..-|.+|+...++.+.+-+ -..+.+ .+ ..-+|.
T Consensus 231 Igs~~~--------~--n----~~LL~~~a~~gkPV--ilk~G~~~t~~e~~~Ave~i~~~G--n~~i~L~~rG~s~yp~ 292 (385)
T 3nvt_A 231 IGARNM--------Q--N----FELLKAAGRVDKPI--LLKRGLSATIEEFIGAAEYIMSQG--NGKIILCERGIRTYEK 292 (385)
T ss_dssp ECGGGT--------T--C----HHHHHHHHTSSSCE--EEECCTTCCHHHHHHHHHHHHTTT--CCCEEEEECCBCCSCC
T ss_pred ECcccc--------c--C----HHHHHHHHccCCcE--EEecCCCCCHHHHHHHHHHHHHcC--CCeEEEEECCCCCCCC
Confidence 873210 0 0 24455566666665 344555579999999999999877 333333 22 222232
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCceecc----ccccccchhhHHHHhhcCccEEeeCCcccc----CCCC---CC
Q psy8199 869 TPLYGSSILDPLEFIRTIAVARITMPTSRIRMS----AGRKEMGETTQAFCFLAGANSIFYGDKLLT----TDNT---KT 937 (965)
Q Consensus 869 T~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~----~~~~~~~~~~~~~~l~~Gan~~~~g~~~~t----~~~~---~~ 937 (965)
.+.... .++.+...|..+. ..+-.. .+...+-..+...|+.+||++++++..+.- +++. ++
T Consensus 293 ~~~~~l-------dl~~i~~lk~~~~-lpV~~D~th~~G~r~~v~~~a~AAvA~GA~gl~iE~H~~pd~a~~D~~~sl~p 364 (385)
T 3nvt_A 293 ATRNTL-------DISAVPILKKETH-LPVMVDVTHSTGRKDLLLPCAKAALAIEADGVMAEVHPDPAVALSDSAQQMDI 364 (385)
T ss_dssp SSSSBC-------CTTHHHHHHHHBS-SCEEEEHHHHHCCGGGHHHHHHHHHHTTCSEEEEEBCSCGGGCSSCTTTSBCH
T ss_pred CCcccc-------CHHHHHHHHHhcC-CCEEEcCCCCCCccchHHHHHHHHHHhCCCEEEEEecCChhhcCCcccccCCH
Confidence 122221 2333444454432 112111 111111124566789999999999976431 2221 45
Q ss_pred hhhHHHHHH
Q psy8199 938 NDDSKLLKK 946 (965)
Q Consensus 938 ~~~~~~~~~ 946 (965)
++..+|+++
T Consensus 365 ~el~~lv~~ 373 (385)
T 3nvt_A 365 PEFEEFWNA 373 (385)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555544
|
| >1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=89.11 E-value=21 Score=36.21 Aligned_cols=178 Identities=13% Similarity=0.045 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHhcCcEeEEecCCCCHHHHHHHHHhCCCeEeccCCCCH
Q psy8199 718 ESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSP 797 (965)
Q Consensus 718 eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~~es~~ 797 (965)
.+..+.++.+.+.|+..+.+.+...- .....+++..+ ++ ..++.+-...+..++..+...+++|+|.+.++...
T Consensus 65 ~~p~~~A~~~~~~GA~~isvlt~~~~-f~G~~~~l~~i-~~--~v~lPvl~kdfI~d~~qi~~a~~~GAD~VlL~~~~-- 138 (254)
T 1vc4_A 65 VDPVEAALAYARGGARAVSVLTEPHR-FGGSLLDLKRV-RE--AVDLPLLRKDFVVDPFMLEEARAFGASAALLIVAL-- 138 (254)
T ss_dssp CCHHHHHHHHHHTTCSEEEEECCCSS-SCCCHHHHHHH-HH--HCCSCEEEESCCCSHHHHHHHHHTTCSEEEEEHHH--
T ss_pred CCHHHHHHHHHHcCCCEEEEecchhh-hccCHHHHHHH-HH--hcCCCEEECCcCCCHHHHHHHHHcCCCEEEECccc--
Confidence 34555667777889999999765322 12234433332 22 36777777788889989999999999999998622
Q ss_pred HHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCCCCCC
Q psy8199 798 KLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSIL 877 (965)
Q Consensus 798 ~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~~~~~ 877 (965)
+. ++..+.++.+++.|+.+. +-. .++++.. .+.+++ .+.+.++.... |.+ .+
T Consensus 139 --l~--------~~l~~l~~~a~~lGl~~l----vev-~~~~E~~----~a~~~g--ad~IGvn~~~l---~~~----~~ 190 (254)
T 1vc4_A 139 --LG--------ELTGAYLEEARRLGLEAL----VEV-HTERELE----IALEAG--AEVLGINNRDL---ATL----HI 190 (254)
T ss_dssp --HG--------GGHHHHHHHHHHHTCEEE----EEE-CSHHHHH----HHHHHT--CSEEEEESBCT---TTC----CB
T ss_pred --hH--------HHHHHHHHHHHHCCCeEE----EEE-CCHHHHH----HHHHcC--CCEEEEccccC---cCC----CC
Confidence 11 234556667778886553 111 3555543 455667 78888886542 112 22
Q ss_pred CHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeCCccccC
Q psy8199 878 DPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTT 932 (965)
Q Consensus 878 ~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~~t~ 932 (965)
+.+...++........++. +.++.+-.....+.. .+.. ||+++.+|+.++..
T Consensus 191 dl~~~~~L~~~i~~~~~~~-~vIAegGI~s~~dv~-~l~~-Ga~gvlVGsAl~~~ 242 (254)
T 1vc4_A 191 NLETAPRLGRLARKRGFGG-VLVAESGYSRKEELK-ALEG-LFDAVLIGTSLMRA 242 (254)
T ss_dssp CTTHHHHHHHHHHHTTCCS-EEEEESCCCSHHHHH-TTTT-TCSEEEECHHHHTS
T ss_pred CHHHHHHHHHhCccccCCC-eEEEEcCCCCHHHHH-HHHc-CCCEEEEeHHHcCC
Confidence 3333333333221101133 223322222223333 4467 99999999976544
|
| >1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A | Back alignment and structure |
|---|
Probab=88.90 E-value=18 Score=35.20 Aligned_cols=164 Identities=13% Similarity=0.111 Sum_probs=99.1
Q ss_pred cCCCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHhc---CcEeEEecCCCCHHHHHHHHHhCCCeE
Q psy8199 713 KILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI---GLETCLTLGMLNENQAYRLKKVGLDYY 789 (965)
Q Consensus 713 ~~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~---~~~i~~~~~~~~~e~l~~Lk~aG~~~i 789 (965)
+..+.++..+.++.+.+.|+.-+.+.... + .. .+.++.+++. +..+... ...+.+.++...++|+|.+
T Consensus 17 ~~~~~~~~~~~~~~~~~~G~~~iev~~~~-~----~~---~~~i~~ir~~~~~~~~ig~~-~v~~~~~~~~a~~~Gad~i 87 (205)
T 1wa3_A 17 RANSVEEAKEKALAVFEGGVHLIEITFTV-P----DA---DTVIKELSFLKEKGAIIGAG-TVTSVEQCRKAVESGAEFI 87 (205)
T ss_dssp CCSSHHHHHHHHHHHHHTTCCEEEEETTS-T----TH---HHHHHHTHHHHHTTCEEEEE-SCCSHHHHHHHHHHTCSEE
T ss_pred ecCCHHHHHHHHHHHHHCCCCEEEEeCCC-h----hH---HHHHHHHHHHCCCCcEEEec-ccCCHHHHHHHHHcCCCEE
Confidence 34678999999999999999988775442 1 12 2344444442 3444443 2357888999999999999
Q ss_pred eccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccccccCCC
Q psy8199 790 NHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGT 869 (965)
Q Consensus 790 ~i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT 869 (965)
++.... .+.++.+++.|+++..++ .|.++ +..+.+++ .+.+.+++ ..
T Consensus 88 -v~~~~~----------------~~~~~~~~~~g~~vi~g~-----~t~~e----~~~a~~~G--ad~vk~~~-----~~ 134 (205)
T 1wa3_A 88 -VSPHLD----------------EEISQFCKEKGVFYMPGV-----MTPTE----LVKAMKLG--HTILKLFP-----GE 134 (205)
T ss_dssp -ECSSCC----------------HHHHHHHHHHTCEEECEE-----CSHHH----HHHHHHTT--CCEEEETT-----HH
T ss_pred -EcCCCC----------------HHHHHHHHHcCCcEECCc-----CCHHH----HHHHHHcC--CCEEEEcC-----cc
Confidence 543211 246677888898876533 35555 33456778 77765431 11
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeCCcccc
Q psy8199 870 PLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLT 931 (965)
Q Consensus 870 ~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~~t 931 (965)
+ .-.+.+...+..+|+..+-..++-. ..+ -...+.+||+.+.+|..+..
T Consensus 135 ~----------~g~~~~~~l~~~~~~~pvia~GGI~--~~~-~~~~~~~Ga~~v~vGs~i~~ 183 (205)
T 1wa3_A 135 V----------VGPQFVKAMKGPFPNVKFVPTGGVN--LDN-VCEWFKAGVLAVGVGSALVK 183 (205)
T ss_dssp H----------HHHHHHHHHHTTCTTCEEEEBSSCC--TTT-HHHHHHHTCSCEEECHHHHC
T ss_pred c----------cCHHHHHHHHHhCCCCcEEEcCCCC--HHH-HHHHHHCCCCEEEECccccC
Confidence 0 1123334444455554444444332 133 33558899999999986644
|
| >1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1 | Back alignment and structure |
|---|
Probab=87.48 E-value=20 Score=35.10 Aligned_cols=165 Identities=12% Similarity=0.114 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHh----cCcEeEEecCCCCHHHHHHHHHhCCCeEeccCC
Q psy8199 719 SVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK----IGLETCLTLGMLNENQAYRLKKVGLDYYNHNLD 794 (965)
Q Consensus 719 ei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~----~~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~~e 794 (965)
+..+.++.+.+.|+..+.+... ..+.+.+.+.++.+++ .+..+.++ +.++.+.++|++.+.++..
T Consensus 27 ~~~~~~~~~~~~G~~~i~l~~~-----~~~~~~~~~~~~~l~~~~~~~~v~v~v~------~~~~~a~~~gad~v~l~~~ 95 (215)
T 1xi3_A 27 PEVESVREALEGGATAIQMRIK-----NAPTREMYEIGKTLRQLTREYDALFFVD------DRVDVALAVDADGVQLGPE 95 (215)
T ss_dssp CHHHHHHHHHHTTCSEEEECCC-----SCCHHHHHHHHHHHHHHHHHTTCEEEEE------SCHHHHHHHTCSEEEECTT
T ss_pred hHHHHHHHHHHCCCCEEEECCC-----CCCHHHHHHHHHHHHHHHHHcCCeEEEc------ChHHHHHHcCCCEEEECCc
Confidence 4455566777889999888532 2234445555555543 46666654 4457888999999987632
Q ss_pred CCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEec-CCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCC
Q psy8199 795 TSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYG 873 (965)
Q Consensus 795 s~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl-~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~ 873 (965)
..+ . +.++.+. .+ +++|. -.|.++.. .+.+.+ .+.+.+..+.|..+.+ .
T Consensus 96 ~~~-----------~----~~~~~~~-~~------~~~~v~~~t~~e~~----~~~~~g--~d~i~~~~~~~~~~~~--~ 145 (215)
T 1xi3_A 96 DMP-----------I----EVAKEIA-PN------LIIGASVYSLEEAL----EAEKKG--ADYLGAGSVFPTKTKE--D 145 (215)
T ss_dssp SCC-----------H----HHHHHHC-TT------SEEEEEESSHHHHH----HHHHHT--CSEEEEECSSCC------C
T ss_pred cCC-----------H----HHHHHhC-CC------CEEEEecCCHHHHH----HHHhcC--CCEEEEcCCccCCCCC--C
Confidence 211 1 1122222 22 34444 26776643 244567 7888776554432211 1
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeCCccccC
Q psy8199 874 SSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTT 932 (965)
Q Consensus 874 ~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~~t~ 932 (965)
..+ ...+.++- .+... +..+-+.++-. ..+... ++.+||+++.+|..+...
T Consensus 146 ~~~-~~~~~l~~---l~~~~-~~pvia~GGI~--~~nv~~-~~~~Ga~gv~vgs~i~~~ 196 (215)
T 1xi3_A 146 ARV-IGLEGLRK---IVESV-KIPVVAIGGIN--KDNARE-VLKTGVDGIAVISAVMGA 196 (215)
T ss_dssp CCC-CHHHHHHH---HHHHC-SSCEEEESSCC--TTTHHH-HHTTTCSEEEESHHHHTS
T ss_pred CCC-cCHHHHHH---HHHhC-CCCEEEECCcC--HHHHHH-HHHcCCCEEEEhHHHhCC
Confidence 122 22333322 22223 33344444333 244443 477999999999876543
|
| >3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=87.47 E-value=21 Score=34.27 Aligned_cols=161 Identities=11% Similarity=0.072 Sum_probs=97.9
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHhcCcEeEEecCC-----CCHHHHHHHHHh-CCCeE
Q psy8199 716 SIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGM-----LNENQAYRLKKV-GLDYY 789 (965)
Q Consensus 716 ~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~-----~~~e~l~~Lk~a-G~~~i 789 (965)
+.+++. .+.+...+.+++.+|. +..+.++++.+|+.+-.+.++.+. .++..++.|++. +.+.+
T Consensus 18 ~~~~l~----~al~s~~~~ifll~g~-------i~~l~~~v~~lk~~~K~v~Vh~Dli~Gls~d~~ai~fL~~~~~pdGI 86 (192)
T 3kts_A 18 NQKDME----KILELDLTYMVMLETH-------VAQLKALVKYAQAGGKKVLLHADLVNGLKNDDYAIDFLCTEICPDGI 86 (192)
T ss_dssp SSHHHH----HHTTSSCCEEEECSEE-------TTTHHHHHHHHHHTTCEEEEEGGGEETCCCSHHHHHHHHHTTCCSEE
T ss_pred CHHHHH----HHHcCCCCEEEEecCc-------HHHHHHHHHHHHHcCCeEEEecCchhccCCcHHHHHHHHhCCCCCEE
Confidence 455543 3334567777776662 234666667777766666555433 378888999873 56543
Q ss_pred eccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccccccCCC
Q psy8199 790 NHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGT 869 (965)
Q Consensus 790 ~i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT 869 (965)
.- .....++.+++.|+.+-..+. +-+ -..+...++.+...+ |+.+-+. ||
T Consensus 87 Is-------------------Tk~~~i~~Ak~~gL~tIqR~F--liD-S~al~~~~~~i~~~~--PD~iEiL-----PG- 136 (192)
T 3kts_A 87 IS-------------------TRGNAIMKAKQHKMLAIQRLF--MID-SSAYNKGVALIQKVQ--PDCIELL-----PG- 136 (192)
T ss_dssp EE-------------------SCHHHHHHHHHTTCEEEEEEE--CCS-HHHHHHHHHHHHHHC--CSEEEEE-----CT-
T ss_pred Ee-------------------CcHHHHHHHHHCCCeEEEEEE--EEE-cchHHHHHHHHhhcC--CCEEEEC-----Cc-
Confidence 11 126789999999996654422 323 344567788888888 8888554 45
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeCCcccc
Q psy8199 870 PLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLT 931 (965)
Q Consensus 870 ~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~~t 931 (965)
+.+ +++...+.... . .-+.++.... .+.-..|+.+||+.+++++..+=
T Consensus 137 -------i~p----~iI~~i~~~~~-~-PiIaGGlI~~-~edv~~al~aGA~aVsTs~~~LW 184 (192)
T 3kts_A 137 -------IIP----EQVQKMTQKLH-I-PVIAGGLIET-SEQVNQVIASGAIAVTTSNKHLW 184 (192)
T ss_dssp -------TCH----HHHHHHHHHHC-C-CEEEESSCCS-HHHHHHHHTTTEEEEEECCGGGG
T ss_pred -------hhH----HHHHHHHHhcC-C-CEEEECCcCC-HHHHHHHHHcCCeEEEeCCHHHh
Confidence 123 23344444442 2 2244444443 44455789999999999886543
|
| >4i6k_A Amidohydrolase family protein; enzyme function initiative, isomerase, structural; HET: CIT; 2.28A {Acinetobacter baumannii} | Back alignment and structure |
|---|
Probab=87.27 E-value=13 Score=38.61 Aligned_cols=210 Identities=14% Similarity=0.097 Sum_probs=111.1
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHhcCcE-eEEecCCCCHHHHHHHHHhCCCeEeccC
Q psy8199 715 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLE-TCLTLGMLNENQAYRLKKVGLDYYNHNL 793 (965)
Q Consensus 715 ~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~~~~-i~~~~~~~~~e~l~~Lk~aG~~~i~i~~ 793 (965)
.+++++++.++ +.|+...+++..... ..+-+++.+++++-...... +.+++.. ..+.++++.+.|+..+-+..
T Consensus 53 ~~~e~~l~~~~---~~GV~~~V~v~~~~~--~~~n~~~~~~~~~~p~r~~g~~~v~P~~-~~~eL~~l~~~gv~Gi~l~~ 126 (294)
T 4i6k_A 53 ATVQSFISHLD---EHNFTHGVLVQPSFL--GTNNQAMLNAIQQYPDRLKGIAVVQHTT-TFNELVNLKAQGIVGVRLNL 126 (294)
T ss_dssp BCHHHHHHHHH---HTTCCEEEEECCGGG--TTCCHHHHHHHHHSTTTEEEEECCCTTC-CHHHHHHHHTTTEEEEEEEC
T ss_pred CCHHHHHHHHH---HcCCCeEEEecCccc--ccchHHHHHHHHHCCCeEEEEEEeCCcc-cHHHHHHHHHCCCcEEEecc
Confidence 46777776654 679999888765321 12335666666543221111 2334432 57889999988887776554
Q ss_pred CCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCC
Q psy8199 794 DTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYG 873 (965)
Q Consensus 794 es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~ 873 (965)
.... .+...-+.+...++.+.+.|+++..+. ...++.+.+..+++.. ..+.+.-+ |.|...
T Consensus 127 ~~~~------~~~~~~~~~~~~~~~a~~~glpv~iH~------~~~~l~~~~~~l~~~p---~~~Vi~H~----g~p~~~ 187 (294)
T 4i6k_A 127 FGLN------LPALNTPDWQKFLRNVESLNWQVELHA------PPKYLVQLLPQLNEYS---FDVVIDHF----GRVDPV 187 (294)
T ss_dssp TTSC------CCCSSSHHHHHHHHHHHHTTCEEEEEC------CHHHHHHHHHHHTTSS---SCEEESGG----GCCCTT
T ss_pred CCCC------CCCcccHHHHHHHHHHHHcCCEEEEee------CcchHHHHHHHHHHCC---CCEEEECC----CCCCCC
Confidence 2210 011233678888999999999987653 1234455555555543 22222222 332211
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCceeccccccccc---------hhhHHHHhhcCccEEeeCCcc-ccCCC--CCChhhH
Q psy8199 874 SSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMG---------ETTQAFCFLAGANSIFYGDKL-LTTDN--TKTNDDS 941 (965)
Q Consensus 874 ~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~---------~~~~~~~l~~Gan~~~~g~~~-~t~~~--~~~~~~~ 941 (965)
... .......+.++++ .|+.-+.+++...... ..++...-..|++.++.|... .+... .+..+.+
T Consensus 188 ~g~-~~~~~~~~~~l~~--~~nv~~k~Sg~~~~~~~~~~~~~~~~~l~~~~~~~g~dRll~gSD~P~~~~~~~~~y~~~~ 264 (294)
T 4i6k_A 188 KGI-EDPDYQKFLSLLN--VKQHWIKVSGFYRLGATPSNINIAQQAYNIFKEKGFLHKLIWGSDWPHTQHESLITYEDAI 264 (294)
T ss_dssp TCT-TCHHHHHHHHHCC--TTTEEEECCCGGGSSSTTHHHHHHHHHHHHHHHHTCGGGEECCCCBTCTTCTTTCCHHHHH
T ss_pred CCC-CCHHHHHHHHHHh--CCCEEEEecccccccccCCCchhhHHHHHHHHHHhCcccEEEeCCCCCCCCcCCCCHHHHH
Confidence 111 1122223333332 4777676665332110 123333445899999988642 22211 1334567
Q ss_pred HHHHHcCCCcc
Q psy8199 942 KLLKKLGINTR 952 (965)
Q Consensus 942 ~~~~~~g~~~~ 952 (965)
+.++++++++.
T Consensus 265 ~~l~~~~~~~~ 275 (294)
T 4i6k_A 265 KAFKQIVFDKH 275 (294)
T ss_dssp HHHHHHCCCHH
T ss_pred HHHHHHCCCHH
Confidence 77888875443
|
| >1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=87.26 E-value=25 Score=34.90 Aligned_cols=158 Identities=9% Similarity=0.022 Sum_probs=97.1
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHhc--CcEeEEecCCCCHHHHHHHHHhCCCeEecc
Q psy8199 715 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI--GLETCLTLGMLNENQAYRLKKVGLDYYNHN 792 (965)
Q Consensus 715 ~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~--~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~ 792 (965)
.+.++.++.++.+.+.|++-+-+..- . ..-.+.++.+++. .+.+.... .++.+.++...++|.+.++.+
T Consensus 35 ~~~~~~~~~~~al~~gGv~~iel~~k--~------~~~~~~i~~l~~~~~~~~igagt-vl~~d~~~~A~~aGAd~v~~p 105 (225)
T 1mxs_A 35 AREEDILPLADALAAGGIRTLEVTLR--S------QHGLKAIQVLREQRPELCVGAGT-VLDRSMFAAVEAAGAQFVVTP 105 (225)
T ss_dssp SCGGGHHHHHHHHHHTTCCEEEEESS--S------THHHHHHHHHHHHCTTSEEEEEC-CCSHHHHHHHHHHTCSSEECS
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEecC--C------ccHHHHHHHHHHhCcccEEeeCe-EeeHHHHHHHHHCCCCEEEeC
Confidence 45678888899999999998887421 1 1223455555542 34443333 578999999999999999866
Q ss_pred CCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCC
Q psy8199 793 LDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLY 872 (965)
Q Consensus 793 ~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~ 872 (965)
+++ .+.++.+++.|+.. +.| -.|.+++.. +.+.+ .+.+.++ |
T Consensus 106 -~~d----------------~~v~~~~~~~g~~~----i~G-~~t~~e~~~----A~~~G--ad~vk~F---P------- 147 (225)
T 1mxs_A 106 -GIT----------------EDILEAGVDSEIPL----LPG-ISTPSEIMM----GYALG--YRRFKLF---P------- 147 (225)
T ss_dssp -SCC----------------HHHHHHHHHCSSCE----ECE-ECSHHHHHH----HHTTT--CCEEEET---T-------
T ss_pred -CCC----------------HHHHHHHHHhCCCE----EEe-eCCHHHHHH----HHHCC--CCEEEEc---c-------
Confidence 333 35667777788654 334 256666543 44677 7888773 2
Q ss_pred CCCCCCHHHH--HHHHHHHHHHCCCCceeccccccccchhhHHHHhh-cCccEEeeCCcc
Q psy8199 873 GSSILDPLEF--IRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFL-AGANSIFYGDKL 929 (965)
Q Consensus 873 ~~~~~~~~~~--~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~-~Gan~~~~g~~~ 929 (965)
.... ...+...+-.+|+..+-..++-.. .+.. ..+. .||+.+. |..+
T Consensus 148 ------a~~~~G~~~lk~i~~~~~~ipvvaiGGI~~--~N~~-~~l~~~Ga~~v~-gSai 197 (225)
T 1mxs_A 148 ------AEISGGVAAIKAFGGPFGDIRFCPTGGVNP--ANVR-NYMALPNVMCVG-TTWM 197 (225)
T ss_dssp ------HHHHTHHHHHHHHHTTTTTCEEEEBSSCCT--TTHH-HHHHSTTBCCEE-ECTT
T ss_pred ------CccccCHHHHHHHHhhCCCCeEEEECCCCH--HHHH-HHHhccCCEEEE-Echh
Confidence 1111 344555566677654444443322 2333 3367 6999987 7654
|
| >1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A | Back alignment and structure |
|---|
Probab=87.18 E-value=12 Score=37.80 Aligned_cols=184 Identities=16% Similarity=0.103 Sum_probs=99.6
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEeec-cCCCCcc---------------cHHHHHHHHHHHHhc-CcEeEEecCCCC----
Q psy8199 716 SIESVITAAQKAKSDGATRFCMGAA-WRELKDR---------------DLDNIENMICEVKKI-GLETCLTLGMLN---- 774 (965)
Q Consensus 716 ~~eei~~~~~~~~~~g~~~i~l~~g-~~~~~~~---------------~~~~~~~~~~~i~~~-~~~i~~~~~~~~---- 774 (965)
+.++..+.++.+.+. ++.+++... .+|..+. ......+.++++++. .+.+.+-.+.-.
T Consensus 17 ~~~~~~~~a~~~~~~-ad~iel~~p~sdp~~DG~~~~~~~~~al~~g~~~~~~~~~i~~i~~~~~~pv~~~~~~~~~~~~ 95 (248)
T 1geq_A 17 DKQSTLNFLLALDEY-AGAIELGIPFSDPIADGKTIQESHYRALKNGFKLREAFWIVKEFRRHSSTPIVLMTYYNPIYRA 95 (248)
T ss_dssp CHHHHHHHHHHHGGG-BSCEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHTTCCCCEEEEECHHHHHHH
T ss_pred CHHHHHHHHHHHHHc-CCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCCCEEEEeccchhhhc
Confidence 457888888888887 888888621 1122211 345667888888863 444443222112
Q ss_pred --HHHHHHHHHhCCCeEeccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEec-CCCHHHHHHHHHHHHhc
Q psy8199 775 --ENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL-SESRDQRAELIFQLANL 851 (965)
Q Consensus 775 --~e~l~~Lk~aG~~~i~i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl-~et~ed~~~~l~~l~~l 851 (965)
++.++.+.++|++.+.++-... ++..+.++.+++.|+++. +++ ..|..+..+.+. +.
T Consensus 96 ~~~~~~~~~~~~Gad~v~~~~~~~-------------~~~~~~~~~~~~~g~~~~----~~i~~~t~~e~~~~~~---~~ 155 (248)
T 1geq_A 96 GVRNFLAEAKASGVDGILVVDLPV-------------FHAKEFTEIAREEGIKTV----FLAAPNTPDERLKVID---DM 155 (248)
T ss_dssp CHHHHHHHHHHHTCCEEEETTCCG-------------GGHHHHHHHHHHHTCEEE----EEECTTCCHHHHHHHH---HH
T ss_pred CHHHHHHHHHHCCCCEEEECCCCh-------------hhHHHHHHHHHHhCCCeE----EEECCCCHHHHHHHHH---hc
Confidence 5889999999999999984332 123355667778887543 355 356555544332 22
Q ss_pred CCCCCceeeccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeCCccc
Q psy8199 852 NPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLL 930 (965)
Q Consensus 852 ~~~~~~i~~~~~~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~~ 930 (965)
- ..++.+ +..+|+- ....... ...++.+...|... +..+-+.++-.. ..+.. ..+.+||+++++|..+.
T Consensus 156 ~--d~~i~~---~~~~G~~-g~~~~~~-~~~~~~i~~l~~~~-~~pi~~~GGI~~-~e~i~-~~~~~Gad~vivGsai~ 224 (248)
T 1geq_A 156 T--TGFVYL---VSLYGTT-GAREEIP-KTAYDLLRRAKRIC-RNKVAVGFGVSK-REHVV-SLLKEGANGVVVGSALV 224 (248)
T ss_dssp C--SSEEEE---ECCC--------CCC-HHHHHHHHHHHHHC-SSCEEEESCCCS-HHHHH-HHHHTTCSEEEECHHHH
T ss_pred C--CCeEEE---EECCccC-CCCCCCC-hhHHHHHHHHHhhc-CCCEEEEeecCC-HHHHH-HHHHcCCCEEEEcHHHH
Confidence 2 123333 2234421 1111112 23344444455544 333434433222 13333 44689999999998653
|
| >2bmb_A Folic acid synthesis protein FOL1; folate biosynthesis, transferase, ligase, multifunctional enzyme; HET: PMM; 2.3A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.18 E-value=2.8 Score=47.29 Aligned_cols=137 Identities=18% Similarity=0.224 Sum_probs=91.4
Q ss_pred CHHHHHHHHHHHHHCC-----CCEEEEeeccCCCC------cccHHHHHHHHHHHHh----cCcEeEEecCCCCHHHHHH
Q psy8199 716 SIESVITAAQKAKSDG-----ATRFCMGAAWRELK------DRDLDNIENMICEVKK----IGLETCLTLGMLNENQAYR 780 (965)
Q Consensus 716 ~~eei~~~~~~~~~~g-----~~~i~l~~g~~~~~------~~~~~~~~~~~~~i~~----~~~~i~~~~~~~~~e~l~~ 780 (965)
+.+++++.++++.+.| +.-+-+.+-...+. ...+++++.+++.+++ ....+-+++.....++++.
T Consensus 247 ~~~~al~~a~~mv~~G~~~~~AdIIDIGgeSTRPGa~~vs~eEEl~RvvpvI~~i~~~~~~~~~~vpISIDT~~a~Vaea 326 (545)
T 2bmb_A 247 DIESQLNDIIKLCKDALYLHESVIIDVGGCSTRPNSIQASEEEEIRRSIPLIKAIRESTELPQDKVILSIDTYRSNVAKE 326 (545)
T ss_dssp CHHHHHHHHHHHHHHHHTTCSCEEEEEECSCCSTTCCCCCHHHHHHHHHHHHHHHHHCSSSCGGGEEEEEECCCHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCCCceEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCeEEEeCCcHHHHHH
Confidence 8999999999999999 99888866333222 3447778888888875 1234556667777888888
Q ss_pred HHHhCCCeEe-ccCCC-CHHHHhcccCC--------------CC------HH----------------------------
Q psy8199 781 LKKVGLDYYN-HNLDT-SPKLYGDIIST--------------RD------YE---------------------------- 810 (965)
Q Consensus 781 Lk~aG~~~i~-i~~es-~~~~~~~i~~~--------------~~------~~---------------------------- 810 (965)
-.++|.+.|+ ++-.. +++.++-+.+. .+ |+
T Consensus 327 Al~aGadIINDVsg~~~d~~m~~vva~~~~~~vVlmH~rG~p~tm~~~~~y~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 406 (545)
T 2bmb_A 327 AIKVGVDIINDISGGLFDSNMFAVIAENPEICYILSHTRGDISTMNRLAHYENFALGDSIQQEFVHNTDIQQLDDLKDKT 406 (545)
T ss_dssp HHHTTCCEEEETTTTSSCTTHHHHHHTCTTSEEEEECCCSCTTTGGGCCCCSSCTTTTTEEEEEETTEEGGGSTTHHHHC
T ss_pred HHHcCCCEEEeCCCCcCChHHHHHHHHhCCCeEEEECCCCCCCCccccccccccccccccchhccccccccccccccccc
Confidence 8888888775 43333 44444221111 00 11
Q ss_pred --------HHHHHHHHHHHcCCc---eeeeEEEecCCCHHHHHHHHHHHHhcC
Q psy8199 811 --------NRLNTLKNVRNVGIN---ICCGGIIGLSESRDQRAELIFQLANLN 852 (965)
Q Consensus 811 --------~~~~~i~~~~~~Gi~---v~~~~i~Gl~et~ed~~~~l~~l~~l~ 852 (965)
...+.++.|.++|++ +...--+|++.|.++-.+.++.+.++.
T Consensus 407 ~vv~~v~~~l~~~i~~a~~~GI~~~~IilDPGiGF~Kt~~~nl~lL~~l~~l~ 459 (545)
T 2bmb_A 407 VLIRNVGQEIGERYIKAIDNGVKRWQILIDPGLGFAKTWKQNLQIIRHIPILK 459 (545)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCTTSSCCHHHHHHHHHTHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCHHHEEEeCCCCcccChHHHHHHHHHHHHHH
Confidence 223467778899995 555555566788888888888888876
|
| >3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ... | Back alignment and structure |
|---|
Probab=86.62 E-value=11 Score=40.55 Aligned_cols=139 Identities=12% Similarity=0.012 Sum_probs=76.7
Q ss_pred CCeEeccCCC-CHHHHhcccCCCCHHHHHHHHHHHHH-----cCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCcee
Q psy8199 786 LDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRN-----VGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVP 859 (965)
Q Consensus 786 ~~~i~i~~es-~~~~~~~i~~~~~~~~~~~~i~~~~~-----~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~ 859 (965)
.|.+.+++-+ +...+..+.......+.+++++.+++ ..+++..-+ ..+.+.+++.+.++.+.+.+ .+.|.
T Consensus 177 ad~ielNisCPn~~G~~~l~~~~~l~~ll~av~~~~~~~~~~~~~Pv~vKi--~p~~~~~~~~~ia~~~~~aG--adgi~ 252 (367)
T 3zwt_A 177 ADYLVVNVSSPNTAGLRSLQGKAELRRLLTKVLQERDGLRRVHRPAVLVKI--APDLTSQDKEDIASVVKELG--IDGLI 252 (367)
T ss_dssp CSEEEEECCCTTSTTGGGGGSHHHHHHHHHHHHHHHHTSCGGGCCEEEEEE--CSCCCHHHHHHHHHHHHHHT--CCEEE
T ss_pred CCEEEEECCCCCCCCccccCCHHHHHHHHHHHHHHHhhccccCCceEEEEe--CCCCCHHHHHHHHHHHHHcC--CCEEE
Confidence 7888888766 43333333222234455555555432 345554333 34567889999999999999 88887
Q ss_pred eccccc-cCCC---CCCCC-----CCCCHHHHHHHHHHHHHHCC-CCceeccccccccchhhHHHHhhcCccEEeeCCcc
Q psy8199 860 INNLVQ-IKGT---PLYGS-----SILDPLEFIRTIAVARITMP-TSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKL 929 (965)
Q Consensus 860 ~~~~~P-~~gT---~l~~~-----~~~~~~~~~~~ia~~R~~lp-~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~ 929 (965)
+..-+. .+++ ++... .+.-....++++...+..++ +..+...++- .. .+-...++.+||+.+++|..+
T Consensus 253 v~ntt~~r~~~~~~~~~~~~gGlSG~~i~p~a~~~v~~i~~~v~~~ipvI~~GGI-~s-~~da~~~l~~GAd~V~vgra~ 330 (367)
T 3zwt_A 253 VTNTTVSRPAGLQGALRSETGGLSGKPLRDLSTQTIREMYALTQGRVPIIGVGGV-SS-GQDALEKIRAGASLVQLYTAL 330 (367)
T ss_dssp ECCCBSCCCTTCCCTTTTSSSEEEEGGGHHHHHHHHHHHHHHTTTCSCEEEESSC-CS-HHHHHHHHHHTCSEEEESHHH
T ss_pred EeCCCcccccccccccccccCCcCCcccchhHHHHHHHHHHHcCCCceEEEECCC-CC-HHHHHHHHHcCCCEEEECHHH
Confidence 653321 1111 01000 11112334567777777776 4433333332 22 333445678999999999865
Q ss_pred c
Q psy8199 930 L 930 (965)
Q Consensus 930 ~ 930 (965)
+
T Consensus 331 l 331 (367)
T 3zwt_A 331 T 331 (367)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=86.60 E-value=30 Score=35.19 Aligned_cols=184 Identities=15% Similarity=0.070 Sum_probs=102.4
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEeeccCCCCc------ccHHHHHHHHHHHHhcCcEeEEecCCCCHHHHHHHHHhCCCeE
Q psy8199 716 SIESVITAAQKAKSDGATRFCMGAAWRELKD------RDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYY 789 (965)
Q Consensus 716 ~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~------~~~~~~~~~~~~i~~~~~~i~~~~~~~~~e~l~~Lk~aG~~~i 789 (965)
|++..++.++.+++.|+.-+.++... +... ...+.+..+.+..++.|+.+.+.+- +.+.++.+.+. ++.+
T Consensus 35 ~~e~a~~~a~~l~~~Ga~~vk~~~fk-prts~~~~~g~~~egl~~l~~~~~~~Gl~~~te~~--d~~~~~~l~~~-vd~~ 110 (262)
T 1zco_A 35 SREQIMKVAEFLAEVGIKVLRGGAFK-PRTSPYSFQGYGEKALRWMREAADEYGLVTVTEVM--DTRHVELVAKY-SDIL 110 (262)
T ss_dssp CHHHHHHHHHHHHHTTCCEEECBSSC-CCSSTTSCCCCTHHHHHHHHHHHHHHTCEEEEECC--CGGGHHHHHHH-CSEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEecc-cCCCcccccCccHHHHHHHHHHHHHcCCcEEEeeC--CHHhHHHHHhh-CCEE
Confidence 58999999999999999888777652 2111 1134443333333458998877653 56668888888 8999
Q ss_pred eccCCC--CHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccccccC
Q psy8199 790 NHNLDT--SPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIK 867 (965)
Q Consensus 790 ~i~~es--~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~ 867 (965)
.++--+ +..+ ++.+.+.|.+| .+=-|..-|.+++.+.++.++.-+ -..+.+. ..
T Consensus 111 kIga~~~~n~~l----------------l~~~a~~~kPV--~lk~G~~~t~~e~~~Av~~i~~~G--n~~i~L~----~R 166 (262)
T 1zco_A 111 QIGARNSQNFEL----------------LKEVGKVENPV--LLKRGMGNTIQELLYSAEYIMAQG--NENVILC----ER 166 (262)
T ss_dssp EECGGGTTCHHH----------------HHHHTTSSSCE--EEECCTTCCHHHHHHHHHHHHTTT--CCCEEEE----EC
T ss_pred EECcccccCHHH----------------HHHHHhcCCcE--EEecCCCCCHHHHHHHHHHHHHCC--CCeEEEE----EC
Confidence 888422 2222 33333445554 233444458999999999998877 3333332 11
Q ss_pred C-CCCCCCCCCCHHHHHHHHHHHHHHCCCCceecccc---ccccchhhHHHHhhcCccEEeeCCcc
Q psy8199 868 G-TPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAG---RKEMGETTQAFCFLAGANSIFYGDKL 929 (965)
Q Consensus 868 g-T~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~---~~~~~~~~~~~~l~~Gan~~~~g~~~ 929 (965)
| +-..+++..+.+ ++.+...|..+.-..+--+.. ...+-......++..||+++|++.++
T Consensus 167 G~~~~~~y~~~~v~--L~ai~~lk~~~~~pVi~d~sH~~g~~~~v~~~~~aAva~Ga~Gl~iE~H~ 230 (262)
T 1zco_A 167 GIRTFETATRFTLD--ISAVPVVKELSHLPIIVDPSHPAGRRSLVIPLAKAAYAIGADGIMVEVHP 230 (262)
T ss_dssp CBCCSCCSSSSBCC--TTHHHHHHHHBSSCEEECSSTTTCSGGGHHHHHHHHHHTTCSEEEEEBCS
T ss_pred CCCCCCCcChhhcC--HHHHHHHHhhhCCCEEEEcCCCCCccchHHHHHHHHHHcCCCEEEEEecC
Confidence 2 111111111111 223333444421111111211 11111255666889999999999875
|
| >3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=86.37 E-value=23 Score=37.95 Aligned_cols=158 Identities=19% Similarity=0.227 Sum_probs=90.9
Q ss_pred ccHHHHHHHHHHHHhc-CcEeEEecCCCCHHHHHHHHHhCCCeEeccCCCCHHHHhcccCCCCHHHHHHHHHHHHHc-CC
Q psy8199 747 RDLDNIENMICEVKKI-GLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNV-GI 824 (965)
Q Consensus 747 ~~~~~~~~~~~~i~~~-~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~-Gi 824 (965)
.+.+.+.+.++++++. ...+..+.+.-+.+.++.+.++|++.+.++... . ..+.+++.++.+++. ++
T Consensus 78 ~s~e~~~~~I~~vk~~~~~pvga~ig~~~~e~a~~l~eaGad~I~ld~a~----------G-~~~~~~~~i~~i~~~~~~ 146 (361)
T 3khj_A 78 MDMESQVNEVLKVKNSGGLRVGAAIGVNEIERAKLLVEAGVDVIVLDSAH----------G-HSLNIIRTLKEIKSKMNI 146 (361)
T ss_dssp SCHHHHHHHHHHHHHTTCCCCEEEECTTCHHHHHHHHHTTCSEEEECCSC----------C-SBHHHHHHHHHHHHHCCC
T ss_pred CCHHHHHHHHHHHHhccCceEEEEeCCCHHHHHHHHHHcCcCeEEEeCCC----------C-CcHHHHHHHHHHHHhcCC
Confidence 3467888888888863 455666666656899999999999998876421 1 135667778887775 66
Q ss_pred ceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCC-----CCCCCCCHHHHHHHHHHHHHHCCCCcee
Q psy8199 825 NICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPL-----YGSSILDPLEFIRTIAVARITMPTSRIR 899 (965)
Q Consensus 825 ~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l-----~~~~~~~~~~~~~~ia~~R~~lp~~~i~ 899 (965)
++.. |-..|.++ ++.+.+.+ .+.|.+. . .+|+.- .....+....+.++...++.. +..+-
T Consensus 147 ~Viv----g~v~t~e~----A~~l~~aG--aD~I~VG-~--~~Gs~~~tr~~~g~g~p~~~~i~~v~~~~~~~--~iPVI 211 (361)
T 3khj_A 147 DVIV----GNVVTEEA----TKELIENG--ADGIKVG-I--GPGSICTTRIVAGVGVPQITAIEKCSSVASKF--GIPII 211 (361)
T ss_dssp EEEE----EEECSHHH----HHHHHHTT--CSEEEEC-S--SCCTTCCHHHHTCBCCCHHHHHHHHHHHHHHH--TCCEE
T ss_pred cEEE----ccCCCHHH----HHHHHHcC--cCEEEEe-c--CCCcCCCcccccCCCCCcHHHHHHHHHHHhhc--CCeEE
Confidence 5543 33356654 45566778 7888763 1 133211 011122233333332222221 22232
Q ss_pred ccccccccchhhHHHHhhcCccEEeeCCccccC
Q psy8199 900 MSAGRKEMGETTQAFCFLAGANSIFYGDKLLTT 932 (965)
Q Consensus 900 i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~~t~ 932 (965)
...+- ....+ -..++.+||+.+++|..+..+
T Consensus 212 A~GGI-~~~~d-i~kala~GAd~V~vGs~~~~t 242 (361)
T 3khj_A 212 ADGGI-RYSGD-IGKALAVGASSVMIGSILAGT 242 (361)
T ss_dssp EESCC-CSHHH-HHHHHHHTCSEEEESTTTTTB
T ss_pred EECCC-CCHHH-HHHHHHcCCCEEEEChhhhcC
Confidence 32222 12233 345688999999999876643
|
| >3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A* 3sfk_A* | Back alignment and structure |
|---|
Probab=86.34 E-value=28 Score=37.87 Aligned_cols=159 Identities=15% Similarity=0.023 Sum_probs=80.2
Q ss_pred CCeEeccCCC-CHHHHhcccCCCCHHHHHHHHHHHHH-----c-------------CCc-eeeeEEEecCCCHHHHHHHH
Q psy8199 786 LDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRN-----V-------------GIN-ICCGGIIGLSESRDQRAELI 845 (965)
Q Consensus 786 ~~~i~i~~es-~~~~~~~i~~~~~~~~~~~~i~~~~~-----~-------------Gi~-v~~~~i~Gl~et~ed~~~~l 845 (965)
+|.+.+++-+ +......+.......+.+++++.+.+ . .++ + .+=+..+.+.+++.+.+
T Consensus 212 ad~ieiNiScPNt~Gl~~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~~~~~~~~~~~~P~V--~VKi~pd~~~~~i~~iA 289 (415)
T 3i65_A 212 ADYIAINVSSPNTPGLRDNQEAGKLKNIILSVKEEIDNLEKNNIMNDEFLWFNTTKKKPLV--FVKLAPDLNQEQKKEIA 289 (415)
T ss_dssp CSEEEEECCCCC--------CCHHHHHHHHHHHHHHHHHHHHCCSCHHHHCCSSSSSCCEE--EEEECSCCCHHHHHHHH
T ss_pred CCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHhhcccccccccccccccCCCCCeE--EEEecCCCCHHHHHHHH
Confidence 5666666655 43333323333344555555555432 0 233 2 23334467888999999
Q ss_pred HHHHhcCCCCCceeecccccc-CCC-CCCC-C----CCCCHHHHHHHHHHHHHHCC-CCceeccccccccchhhHHHHhh
Q psy8199 846 FQLANLNPYPESVPINNLVQI-KGT-PLYG-S----SILDPLEFIRTIAVARITMP-TSRIRMSAGRKEMGETTQAFCFL 917 (965)
Q Consensus 846 ~~l~~l~~~~~~i~~~~~~P~-~gT-~l~~-~----~~~~~~~~~~~ia~~R~~lp-~~~i~i~~~~~~~~~~~~~~~l~ 917 (965)
+.+.+.+ .+.|.+..-+.. .+. .+.. . .++-....++++...+..++ +..+...++- ..+.+ ...++.
T Consensus 290 ~~a~~aG--aDgIiv~Ntt~~r~dl~~~~~~~GGlSG~a~~p~al~~I~~v~~~v~~~iPIIg~GGI-~s~eD-a~e~l~ 365 (415)
T 3i65_A 290 DVLLETN--IDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQIPIIASGGI-FSGLD-ALEKIE 365 (415)
T ss_dssp HHHHHHT--CSEEEECCCBSCCCCCGGGTTCCSEEEEGGGHHHHHHHHHHHHHHTTTCSCEEECSSC-CSHHH-HHHHHH
T ss_pred HHHHHcC--CcEEEEeCCCcccccccccccccCCcCCccchHHHHHHHHHHHHHhCCCCCEEEECCC-CCHHH-HHHHHH
Confidence 9999999 888876632211 000 0000 0 11112445667777777775 3433333332 32333 445678
Q ss_pred cCccEEeeCCccccCCCCC----ChhhHHHHHHcCCC
Q psy8199 918 AGANSIFYGDKLLTTDNTK----TNDDSKLLKKLGIN 950 (965)
Q Consensus 918 ~Gan~~~~g~~~~t~~~~~----~~~~~~~~~~~g~~ 950 (965)
+||+.+++|..++..+-.- .++..+.+++.|+.
T Consensus 366 aGAd~VqIgra~l~~GP~~~~~i~~~L~~~l~~~G~~ 402 (415)
T 3i65_A 366 AGASVCQLYSCLVFNGMKSAVQIKRELNHLLYQRGYY 402 (415)
T ss_dssp HTEEEEEESHHHHHHGGGHHHHHHHHHHHHHHHTTCS
T ss_pred cCCCEEEEcHHHHhcCHHHHHHHHHHHHHHHHHcCCC
Confidence 9999999997654431111 12334455666765
|
| >3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C* | Back alignment and structure |
|---|
Probab=85.78 E-value=7.2 Score=41.86 Aligned_cols=147 Identities=15% Similarity=0.110 Sum_probs=83.1
Q ss_pred HHHHHHHhCCCeEeccCCC-CHHHHhcccC---CCCHHHHHHHHHHHHH-cCCceeeeEEEecC--CCHHHHHHHHHHHH
Q psy8199 777 QAYRLKKVGLDYYNHNLDT-SPKLYGDIIS---TRDYENRLNTLKNVRN-VGINICCGGIIGLS--ESRDQRAELIFQLA 849 (965)
Q Consensus 777 ~l~~Lk~aG~~~i~i~~es-~~~~~~~i~~---~~~~~~~~~~i~~~~~-~Gi~v~~~~i~Gl~--et~ed~~~~l~~l~ 849 (965)
..+.+.++|+|.|.++.-+ .+...+.-.+ ....+...+.++.+++ .++++..-+=.|.. .+.++..+.++.+.
T Consensus 75 aA~~a~~~G~D~IeIn~gcP~~~~~~d~~G~~l~~~~~~~~eiv~av~~~v~~PV~vKiR~g~~~~~~~~~~~~~a~~l~ 154 (350)
T 3b0p_A 75 AARIGEAFGYDEINLNLGCPSEKAQEGGYGACLLLDLARVREILKAMGEAVRVPVTVKMRLGLEGKETYRGLAQSVEAMA 154 (350)
T ss_dssp HHHHHHHTTCSEEEEEECCCSHHHHHTTCGGGGGGCHHHHHHHHHHHHHHCSSCEEEEEESCBTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEECCcCCCCcCcCCCcchhHHhCHHHHHHHHHHHHHHhCCceEEEEecCcCccccHHHHHHHHHHHH
Confidence 3556677899999888766 4433322111 1246677777777776 47777665555663 46678889999999
Q ss_pred hcCCCCCceeeccccccCC---CCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeC
Q psy8199 850 NLNPYPESVPINNLVQIKG---TPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYG 926 (965)
Q Consensus 850 ~l~~~~~~i~~~~~~P~~g---T~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g 926 (965)
+.+ .+.+.+..-....| ......++.. ...+...+..+|+..+-..++-.. .+....++. ||+.+++|
T Consensus 155 ~aG--~d~I~V~~r~~~~g~~g~~~~~~~~~~----~~~i~~ik~~~~~iPVianGgI~s--~eda~~~l~-GaD~V~iG 225 (350)
T 3b0p_A 155 EAG--VKVFVVHARSALLALSTKANREIPPLR----HDWVHRLKGDFPQLTFVTNGGIRS--LEEALFHLK-RVDGVMLG 225 (350)
T ss_dssp HTT--CCEEEEECSCBC----------CCCCC----HHHHHHHHHHCTTSEEEEESSCCS--HHHHHHHHT-TSSEEEEC
T ss_pred HcC--CCEEEEecCchhcccCcccccCCCccc----HHHHHHHHHhCCCCeEEEECCcCC--HHHHHHHHh-CCCEEEEC
Confidence 999 88887763322111 0000111122 233344455566554444433222 233334565 99999999
Q ss_pred CccccC
Q psy8199 927 DKLLTT 932 (965)
Q Consensus 927 ~~~~t~ 932 (965)
..++..
T Consensus 226 Ra~l~~ 231 (350)
T 3b0p_A 226 RAVYED 231 (350)
T ss_dssp HHHHHC
T ss_pred HHHHhC
Confidence 765433
|
| >1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=84.59 E-value=21 Score=35.62 Aligned_cols=169 Identities=10% Similarity=0.009 Sum_probs=92.7
Q ss_pred CCHH--HHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHh-cCcEeE-Ee-----c-CC---CCHHHHHHH
Q psy8199 715 LSIE--SVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETC-LT-----L-GM---LNENQAYRL 781 (965)
Q Consensus 715 ~~~e--ei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~-~~~~i~-~~-----~-~~---~~~e~l~~L 781 (965)
.+++ ++.+.++.+.+.|+..+++. + . +.++.+++ .++.+. .. . .. .+.+.++.+
T Consensus 31 ~~~~~~~~~~~a~~~~~~G~~~i~~~-~--------~----~~i~~i~~~~~~p~i~~~~~~~~~~~~~i~~~~~~i~~~ 97 (234)
T 1yxy_A 31 YSETGGIMPLMAKAAQEAGAVGIRAN-S--------V----RDIKEIQAITDLPIIGIIKKDYPPQEPFITATMTEVDQL 97 (234)
T ss_dssp CCTTCCSHHHHHHHHHHHTCSEEEEE-S--------H----HHHHHHHTTCCSCEEEECBCCCTTSCCCBSCSHHHHHHH
T ss_pred cCCccchHHHHHHHHHHCCCcEeecC-C--------H----HHHHHHHHhCCCCEEeeEcCCCCccccccCChHHHHHHH
Confidence 4466 77777788888899988873 1 1 23455554 344442 11 0 11 257889999
Q ss_pred HHhCCCeEeccCCCC--HHHHhcccCCCCHHHHHHHHHHHHHc--CCceeeeEEEec-CCCHHHHHHHHHHHHhcCCCCC
Q psy8199 782 KKVGLDYYNHNLDTS--PKLYGDIISTRDYENRLNTLKNVRNV--GINICCGGIIGL-SESRDQRAELIFQLANLNPYPE 856 (965)
Q Consensus 782 k~aG~~~i~i~~es~--~~~~~~i~~~~~~~~~~~~i~~~~~~--Gi~v~~~~i~Gl-~et~ed~~~~l~~l~~l~~~~~ 856 (965)
.++|++.+.++.+.. +. +... .+.++.+++. +.. ++. ..|.++ +..+.+.+ .+
T Consensus 98 ~~~Gad~V~l~~~~~~~~~-------~~~~---~~~i~~i~~~~~~~~------v~~~~~t~~e----a~~a~~~G--ad 155 (234)
T 1yxy_A 98 AALNIAVIAMDCTKRDRHD-------GLDI---ASFIRQVKEKYPNQL------LMADISTFDE----GLVAHQAG--ID 155 (234)
T ss_dssp HTTTCSEEEEECCSSCCTT-------CCCH---HHHHHHHHHHCTTCE------EEEECSSHHH----HHHHHHTT--CS
T ss_pred HHcCCCEEEEcccccCCCC-------CccH---HHHHHHHHHhCCCCe------EEEeCCCHHH----HHHHHHcC--CC
Confidence 999999998887552 10 1122 4556666665 433 233 256655 45556677 78
Q ss_pred ce--eeccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeCCccc
Q psy8199 857 SV--PINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLL 930 (965)
Q Consensus 857 ~i--~~~~~~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~~ 930 (965)
.+ .+..+.| ++. ...+...+.+.++ +.. +..+-..++-.. .+....++.+||+.+++|..+.
T Consensus 156 ~i~~~v~g~~~--~~~--~~~~~~~~~i~~~----~~~--~ipvia~GGI~s--~~~~~~~~~~Gad~v~vGsal~ 219 (234)
T 1yxy_A 156 FVGTTLSGYTP--YSR--QEAGPDVALIEAL----CKA--GIAVIAEGKIHS--PEEAKKINDLGVAGIVVGGAIT 219 (234)
T ss_dssp EEECTTTTSST--TSC--CSSSCCHHHHHHH----HHT--TCCEEEESCCCS--HHHHHHHHTTCCSEEEECHHHH
T ss_pred EEeeeccccCC--CCc--CCCCCCHHHHHHH----HhC--CCCEEEECCCCC--HHHHHHHHHCCCCEEEEchHHh
Confidence 88 4554433 331 1122233222222 221 333333333221 3333455789999999998653
|
| >1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=84.11 E-value=35 Score=33.77 Aligned_cols=161 Identities=10% Similarity=0.048 Sum_probs=97.9
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHhc--CcEeEEecCCCCHHHHHHHHHhCCCeEec
Q psy8199 714 ILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI--GLETCLTLGMLNENQAYRLKKVGLDYYNH 791 (965)
Q Consensus 714 ~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~--~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i 791 (965)
..++++.++.++.+.+.|++-+-+..- . . .-.+.++.+++. .+.+.... .++.+.++...++|.+.+..
T Consensus 25 ~~~~~~~~~~~~al~~gGv~~iel~~k--~---~---~~~~~i~~l~~~~~~l~vgaGt-vl~~d~~~~A~~aGAd~v~~ 95 (224)
T 1vhc_A 25 LDNADDILPLADTLAKNGLSVAEITFR--S---E---AAADAIRLLRANRPDFLIAAGT-VLTAEQVVLAKSSGADFVVT 95 (224)
T ss_dssp CSSGGGHHHHHHHHHHTTCCEEEEETT--S---T---THHHHHHHHHHHCTTCEEEEES-CCSHHHHHHHHHHTCSEEEC
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecc--C---c---hHHHHHHHHHHhCcCcEEeeCc-EeeHHHHHHHHHCCCCEEEE
Confidence 356788889999999999998877422 1 1 123455555543 33343343 55899999999999999976
Q ss_pred cCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCC
Q psy8199 792 NLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPL 871 (965)
Q Consensus 792 ~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l 871 (965)
+ +++ .+.++.+++.|..+-. | -.|.+++.. +.+.+ .+.+.++ | .
T Consensus 96 p-~~d----------------~~v~~~ar~~g~~~i~----G-v~t~~e~~~----A~~~G--ad~vk~F---p--a--- 139 (224)
T 1vhc_A 96 P-GLN----------------PKIVKLCQDLNFPITP----G-VNNPMAIEI----ALEMG--ISAVKFF---P--A--- 139 (224)
T ss_dssp S-SCC----------------HHHHHHHHHTTCCEEC----E-ECSHHHHHH----HHHTT--CCEEEET---T--T---
T ss_pred C-CCC----------------HHHHHHHHHhCCCEEe----c-cCCHHHHHH----HHHCC--CCEEEEe---e--C---
Confidence 6 333 3456778888876544 4 246766543 45678 7888773 3 1
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhc-CccEEeeCCcc
Q psy8199 872 YGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLA-GANSIFYGDKL 929 (965)
Q Consensus 872 ~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~-Gan~~~~g~~~ 929 (965)
.+.... ..+...|-.+|+..+-..++-.. .+.. ..+.+ |+..+. |..+
T Consensus 140 ---~~~gG~---~~lk~l~~~~~~ipvvaiGGI~~--~N~~-~~l~agga~~v~-gS~i 188 (224)
T 1vhc_A 140 ---EASGGV---KMIKALLGPYAQLQIMPTGGIGL--HNIR-DYLAIPNIVACG-GSWF 188 (224)
T ss_dssp ---TTTTHH---HHHHHHHTTTTTCEEEEBSSCCT--TTHH-HHHTSTTBCCEE-ECGG
T ss_pred ---ccccCH---HHHHHHHhhCCCCeEEEECCcCH--HHHH-HHHhcCCCEEEE-Echh
Confidence 112222 33444466677654433443322 2333 34777 888876 6654
|
| >1vr6_A Phospho-2-dehydro-3-deoxyheptonate aldolase; TM0343, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative; 1.92A {Thermotoga maritima} SCOP: c.1.10.4 PDB: 1rzm_A* 3pg9_A* 3pg8_A* | Back alignment and structure |
|---|
Probab=83.91 E-value=38 Score=35.96 Aligned_cols=183 Identities=13% Similarity=0.089 Sum_probs=101.0
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEeeccCCCCc-----ccHHHHHHHHHHHHhcCcEeEEecCCCCHHHHHHHHHhCCCeEe
Q psy8199 716 SIESVITAAQKAKSDGATRFCMGAAWRELKD-----RDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYN 790 (965)
Q Consensus 716 ~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~-----~~~~~~~~~~~~i~~~~~~i~~~~~~~~~e~l~~Lk~aG~~~i~ 790 (965)
+.+..++.++.+++.|.+-+-++..-..... ...+.+..+.+..++.|+.+.+++ .+.+.++.+.+. ++.+.
T Consensus 118 s~e~a~~~a~~~k~aGa~~vr~q~fKprTs~~~f~glg~egl~~l~~~~~e~Gl~~~te~--~d~~~~~~l~~~-vd~lk 194 (350)
T 1vr6_A 118 GREMLMETAHFLSELGVKVLRGGAYKPRTSPYSFQGLGEKGLEYLREAADKYGMYVVTEA--LGEDDLPKVAEY-ADIIQ 194 (350)
T ss_dssp CHHHHHHHHHHHHHTTCCEEECBSCCCCCSTTSCCCCTHHHHHHHHHHHHHHTCEEEEEC--SSGGGHHHHHHH-CSEEE
T ss_pred CHHHHHHHHHHHHHcCCCeeeeeEEeCCCChHhhcCCCHHHHHHHHHHHHHcCCcEEEEe--CCHHHHHHHHHh-CCEEE
Confidence 6899999999999999987766554321111 123333333333345899888754 467788888888 89988
Q ss_pred ccCCC--CHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeec--ccccc
Q psy8199 791 HNLDT--SPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPIN--NLVQI 866 (965)
Q Consensus 791 i~~es--~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~--~~~P~ 866 (965)
++--+ +. ..++.+.+.|.+| .+=-|+.-|.+|+...++.+..-+ -..+.+. ...-+
T Consensus 195 IgAr~~~n~----------------~LL~~va~~~kPV--ilk~G~~~tl~ei~~Ave~i~~~G--N~~viLceRG~~ty 254 (350)
T 1vr6_A 195 IGARNAQNF----------------RLLSKAGSYNKPV--LLKRGFMNTIEEFLLSAEYIANSG--NTKIILCERGIRTF 254 (350)
T ss_dssp ECGGGTTCH----------------HHHHHHHTTCSCE--EEECCTTCCHHHHHHHHHHHHHTT--CCCEEEEECCBCCS
T ss_pred ECcccccCH----------------HHHHHHHccCCcE--EEcCCCCCCHHHHHHHHHHHHHCC--CCeEEEEeCCCCCC
Confidence 88422 22 2233333445444 233333358888998888888877 3334331 01111
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHH--CCCCceecc--ccccccchhhHHHHhhcCccEEeeCCcc
Q psy8199 867 KGTPLYGSSILDPLEFIRTIAVARIT--MPTSRIRMS--AGRKEMGETTQAFCFLAGANSIFYGDKL 929 (965)
Q Consensus 867 ~gT~l~~~~~~~~~~~~~~ia~~R~~--lp~~~i~i~--~~~~~~~~~~~~~~l~~Gan~~~~g~~~ 929 (965)
|+-+..... ++.+...|.. +| +.+-.+ .+...+-......|+.+||+++|++..+
T Consensus 255 p~~~~~~vd-------l~ai~~lk~~~~lp-Vi~dssHs~G~~~~v~~~a~AAvA~GA~Gl~IE~H~ 313 (350)
T 1vr6_A 255 EKATRNTLD-------ISAVPIIRKESHLP-ILVDPSHSGGRRDLVIPLSRAAIAVGAHGIIVEVHP 313 (350)
T ss_dssp CCSSSSBCC-------TTHHHHHHHHBSSC-EEECHHHHHCSGGGHHHHHHHHHHHTCSEEEEEBCS
T ss_pred CCcChhhhh-------HHHHHHHHHhhCCC-EEEeCCCCCcccchHHHHHHHHHHhCCCEEEEEecC
Confidence 211111111 2233334443 33 111111 1111111455667888999999999875
|
| >3ndo_A Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; HET: GOL; 1.25A {Mycobacterium smegmatis} PDB: 3ng3_A | Back alignment and structure |
|---|
Probab=83.55 E-value=37 Score=33.65 Aligned_cols=175 Identities=14% Similarity=0.109 Sum_probs=104.8
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHhcCcEeEEecCCC----CH----HHHHHHHHhC
Q psy8199 714 ILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGML----NE----NQAYRLKKVG 785 (965)
Q Consensus 714 ~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~----~~----e~l~~Lk~aG 785 (965)
..+.++|.+.++++.+.|+..+|+..+ ++...+.++..++.+++..+.. +. ...+...+.|
T Consensus 25 ~~t~~~i~~lc~eA~~~~~~aVcV~p~-----------~v~~a~~l~~~~v~v~tVigFP~G~~~~~~K~~E~~~Ai~~G 93 (231)
T 3ndo_A 25 EATPSDVTALVDEAADLGVFAVCVSPP-----------LVSVAAGVAPSGLAIAAVAGFPSGKHVPGIKATEAELAVAAG 93 (231)
T ss_dssp TCCHHHHHHHHHHHHHHTCSEEEECGG-----------GHHHHHHHCCTTCEEEEEESTTTCCSCHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHhCCcEEEECHH-----------HHHHHHHhcCCCCeEEEEecCCCCCCcHHHHHHHHHHHHHcC
Confidence 367899999999999999999999222 2222223455677777744333 22 2345556679
Q ss_pred CCeEeccCCCCHHHHhcccCCCCHHHHHHHHHHHHHc--CCceeeeEEEecC-----CCHHHHHHHHHHHHhcCCCCCce
Q psy8199 786 LDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNV--GINICCGGIIGLS-----ESRDQRAELIFQLANLNPYPESV 858 (965)
Q Consensus 786 ~~~i~i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~--Gi~v~~~~i~Gl~-----et~ed~~~~l~~l~~l~~~~~~i 858 (965)
.+.+.+-+.- ..+ +...++...+-+..++++ |..+ -+|+-.+ .|++++....+...+.+ .++|
T Consensus 94 AdEIDmVini-----g~l-k~g~~~~v~~ei~~v~~a~~~~~l--KvIiEt~~L~~~~t~eei~~a~~ia~~aG--ADfV 163 (231)
T 3ndo_A 94 ATEIDMVIDV-----GAA-LAGDLDAVSADITAVRKAVRAATL--KVIVESAALLEFSGEPLLADVCRVARDAG--ADFV 163 (231)
T ss_dssp CSEEEEECCH-----HHH-HTTCHHHHHHHHHHHHHHTTTSEE--EEECCHHHHHHHTCHHHHHHHHHHHHHTT--CSEE
T ss_pred CCEEEEEeeh-----Hhh-hcccHHHHHHHHHHHHHHccCCce--EEEEECcccCCCCCHHHHHHHHHHHHHHC--cCEE
Confidence 9888665511 111 134566666666666654 4333 3444332 38999999999999999 8999
Q ss_pred eecc-ccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccE
Q psy8199 859 PINN-LVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANS 922 (965)
Q Consensus 859 ~~~~-~~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~ 922 (965)
.-+. |.|. ...+.+++.-+.... =++..+.++++.... +.....+.+||+.
T Consensus 164 KTSTGf~~~--------~gAt~edv~lm~~~v---~~~v~VKaaGGIrt~--~~a~~~i~aGa~R 215 (231)
T 3ndo_A 164 KTSTGFHPS--------GGASVQAVEIMARTV---GERLGVKASGGIRTA--EQAAAMLDAGATR 215 (231)
T ss_dssp ECCCSCCTT--------CSCCHHHHHHHHHHH---TTTSEEEEESSCCSH--HHHHHHHHTTCSE
T ss_pred EcCCCCCCC--------CCCCHHHHHHHHHHh---CCCceEEEeCCCCCH--HHHHHHHHhcchh
Confidence 7652 2221 223444333332222 256666776655432 3344568999995
|
| >2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=82.76 E-value=6.4 Score=38.72 Aligned_cols=139 Identities=11% Similarity=0.156 Sum_probs=80.9
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHhcCcEeEEe--cCCC----CHHHHHHHHHhCCCeE
Q psy8199 716 SIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLT--LGML----NENQAYRLKKVGLDYY 789 (965)
Q Consensus 716 ~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~~~~i~~~--~~~~----~~e~l~~Lk~aG~~~i 789 (965)
+.+...+.++.+++.|+..|.|.- .++....+.+...++++..+ ++.++++ .+.. ..+.++.|.+.|+++|
T Consensus 74 E~~~M~~Di~~~~~~GadGvV~G~-Lt~dg~iD~~~~~~Li~~a~--~~~vTFHRAFD~~~~~d~~~ale~L~~lGv~rI 150 (224)
T 2bdq_A 74 ELRIMEEDILRAVELESDALVLGI-LTSNNHIDTEAIEQLLPATQ--GLPLVFHMAFDVIPKSDQKKSIDQLVALGFTRI 150 (224)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEECC-BCTTSSBCHHHHHHHHHHHT--TCCEEECGGGGGSCTTTHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEee-ECCCCCcCHHHHHHHHHHhC--CCeEEEECchhccCCcCHHHHHHHHHHcCCCEE
Confidence 367788888999999999999843 34555677888888887664 5555552 2212 2566999999999998
Q ss_pred ecc-CCCCHHHHhcccCCCCHHHHHHHHHHHHH-cCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccccccC
Q psy8199 790 NHN-LDTSPKLYGDIISTRDYENRLNTLKNVRN-VGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIK 867 (965)
Q Consensus 790 ~i~-~es~~~~~~~i~~~~~~~~~~~~i~~~~~-~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~ 867 (965)
.-+ ...+ .+..+-++.++.+.+ ++- ...+|.|-|-+.+.+.+.+ ...+ ...+-...++-.+
T Consensus 151 LTSG~~~~----------~~a~~g~~~L~~Lv~~a~~--ri~Im~GgGV~~~Ni~~l~---~~tG--v~e~H~s~i~~~~ 213 (224)
T 2bdq_A 151 LLHGSSNG----------EPIIENIKHIKALVEYANN--RIEIMVGGGVTAENYQYIC---QETG--VKQAHGTRITQMA 213 (224)
T ss_dssp EECSCSSC----------CCGGGGHHHHHHHHHHHTT--SSEEEECSSCCTTTHHHHH---HHHT--CCEEEETTCC---
T ss_pred ECCCCCCC----------CcHHHHHHHHHHHHHhhCC--CeEEEeCCCCCHHHHHHHH---HhhC--CCEEccccccCCC
Confidence 633 2111 112233344444333 222 3468888875555444432 3457 6777778788888
Q ss_pred CCCCCCC
Q psy8199 868 GTPLYGS 874 (965)
Q Consensus 868 gT~l~~~ 874 (965)
|.|++.+
T Consensus 214 ~~~~~~~ 220 (224)
T 2bdq_A 214 GDPLEHH 220 (224)
T ss_dssp -------
T ss_pred CCcchhc
Confidence 9998754
|
| >1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A* | Back alignment and structure |
|---|
Probab=82.52 E-value=39 Score=33.15 Aligned_cols=162 Identities=12% Similarity=0.063 Sum_probs=98.7
Q ss_pred cCCCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHhc--CcEeEEecCCCCHHHHHHHHHhCCCeEe
Q psy8199 713 KILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI--GLETCLTLGMLNENQAYRLKKVGLDYYN 790 (965)
Q Consensus 713 ~~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~--~~~i~~~~~~~~~e~l~~Lk~aG~~~i~ 790 (965)
+..++++.++.++.+.+.|++-+-+..- . .. -.+.++.+++. .+.+.... .++.+.++...++|.+.+.
T Consensus 23 r~~~~~~~~~~~~al~~gGv~~iel~~k--~--~~----~~~~i~~l~~~~~~~~vgagt-vi~~d~~~~A~~aGAd~v~ 93 (214)
T 1wbh_A 23 VVKKLEHAVPMAKALVAGGVRVLNVTLR--T--EC----AVDAIRAIAKEVPEAIVGAGT-VLNPQQLAEVTEAGAQFAI 93 (214)
T ss_dssp CCSSGGGHHHHHHHHHHTTCCEEEEESC--S--TT----HHHHHHHHHHHCTTSEEEEES-CCSHHHHHHHHHHTCSCEE
T ss_pred ECCCHHHHHHHHHHHHHcCCCEEEEeCC--C--hh----HHHHHHHHHHHCcCCEEeeCE-EEEHHHHHHHHHcCCCEEE
Confidence 4457888999999999999998888522 1 11 23455555442 34444444 7889999999999999998
Q ss_pred ccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCC
Q psy8199 791 HNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTP 870 (965)
Q Consensus 791 i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~ 870 (965)
.+ +++ .+.++.+++.|+.. +.| -.|.+++.. +.+.+ .+.+.++ | ..
T Consensus 94 ~p-~~d----------------~~v~~~~~~~g~~~----i~G-~~t~~e~~~----A~~~G--ad~v~~F---p--a~- 139 (214)
T 1wbh_A 94 SP-GLT----------------EPLLKAATEGTIPL----IPG-ISTVSELML----GMDYG--LKEFKFF---P--AE- 139 (214)
T ss_dssp ES-SCC----------------HHHHHHHHHSSSCE----EEE-ESSHHHHHH----HHHTT--CCEEEET---T--TT-
T ss_pred cC-CCC----------------HHHHHHHHHhCCCE----EEe-cCCHHHHHH----HHHCC--CCEEEEe---c--Cc-
Confidence 76 333 35667777888654 334 256666543 34677 7888773 3 11
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhc-CccEEeeCCcc
Q psy8199 871 LYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLA-GANSIFYGDKL 929 (965)
Q Consensus 871 l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~-Gan~~~~g~~~ 929 (965)
..... ..+...+-.+|+..+-..++-.. .+.. ..+.+ |+..+. |..+
T Consensus 140 -----~~gG~---~~lk~i~~~~~~ipvvaiGGI~~--~n~~-~~l~agg~~~v~-gS~i 187 (214)
T 1wbh_A 140 -----ANGGV---KALQAIAGPFSQVRFCPTGGISP--ANYR-DYLALKSVLCIG-GSWL 187 (214)
T ss_dssp -----TTTHH---HHHHHHHTTCTTCEEEEBSSCCT--TTHH-HHHTSTTBSCEE-EGGG
T ss_pred -----cccCH---HHHHHHhhhCCCCeEEEECCCCH--HHHH-HHHhcCCCeEEE-eccc
Confidence 11222 33444455677654433443322 2333 34777 888876 6644
|
| >3mcm_A 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase/dihydropteroate...; folate, TIM barrel, synthase, HPPK, DHPS; 2.20A {Francisella tularensis subsp} PDB: 3mcn_A* 3mco_A* | Back alignment and structure |
|---|
Probab=82.15 E-value=3.9 Score=44.89 Aligned_cols=74 Identities=7% Similarity=0.078 Sum_probs=54.0
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEeeccCCCC------cccHHHHHHHHHHHHh---cC-cEeEEecCCCCHHHHHHHHH-
Q psy8199 715 LSIESVITAAQKAKSDGATRFCMGAAWRELK------DRDLDNIENMICEVKK---IG-LETCLTLGMLNENQAYRLKK- 783 (965)
Q Consensus 715 ~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~------~~~~~~~~~~~~~i~~---~~-~~i~~~~~~~~~e~l~~Lk~- 783 (965)
.+.+++++.++++.+.|+.-+-+.+....+. ...++++...++.+++ .. ..+-+++.....++++.--+
T Consensus 209 ~~~~~al~~A~~mv~~GAdIIDIGgeSTrPGa~~Vs~~EE~~Rv~pvI~~l~~~~~~~~~~vpISIDT~~~~VaeaAL~~ 288 (442)
T 3mcm_A 209 FDDNQRKLNLDELIQSGAEIIDIGAESTKPDAKPISIEEEFNKLNEFLEYFKSQLANLIYKPLVSIDTRKLEVMQKILAK 288 (442)
T ss_dssp SCCCHHHHHHHHHHHHTCSEEEEECCCCCC----CCHHHHHHHHHHHHHHHHHHTTTCSSCCEEEEECCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCeEEEeCCCHHHHHHHHhh
Confidence 4578999999999999999999875333211 2346677777888876 21 25566677778999988888
Q ss_pred -hCCCe
Q psy8199 784 -VGLDY 788 (965)
Q Consensus 784 -aG~~~ 788 (965)
+|.+.
T Consensus 289 ~aGa~i 294 (442)
T 3mcm_A 289 HHDIIW 294 (442)
T ss_dssp HGGGCC
T ss_pred CCCCCE
Confidence 89876
|
| >3g8r_A Probable spore coat polysaccharide biosynthesis P; structural genomics, protein structure initiative; 2.49A {Chromobacterium violaceum atcc 12472} | Back alignment and structure |
|---|
Probab=81.99 E-value=39 Score=35.78 Aligned_cols=182 Identities=11% Similarity=0.125 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHHHCCCC-----EEEEeeccC------------CCC--------cccHHHHHHHHHHHHhcCcEeEEecC
Q psy8199 717 IESVITAAQKAKSDGAT-----RFCMGAAWR------------ELK--------DRDLDNIENMICEVKKIGLETCLTLG 771 (965)
Q Consensus 717 ~eei~~~~~~~~~~g~~-----~i~l~~g~~------------~~~--------~~~~~~~~~~~~~i~~~~~~i~~~~~ 771 (965)
.+-..+.++.+++.|+. .+-||+... ... ..+.+.+.++.+..++.|+.+.+++-
T Consensus 20 le~Ak~lI~~A~~aGad~~~d~avKfQt~~~d~l~~~~~~~~~~~~~~~~~~~~el~~e~~~~L~~~~~~~Gi~~~st~f 99 (350)
T 3g8r_A 20 VEHGVALIRAIRESCQGFDFDFGFKLQYRNLDTFIHSSFKGRDDVKYVKRFEETRLQPEQMQKLVAEMKANGFKAICTPF 99 (350)
T ss_dssp SHHHHHHHHHHHHHTTTCCSEEEEEEEECCHHHHBCGGGTTCCSSSSHHHHHHTCCCHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred HHHHHHHHHHHHHhCCcccCCeeEEccccchhhhcChhccCccHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcEEeccC
Confidence 45555555666666766 787875210 000 13345556666666668999887754
Q ss_pred CCCHHHHHHHHHhCCCeEeccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhc
Q psy8199 772 MLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANL 851 (965)
Q Consensus 772 ~~~~e~l~~Lk~aG~~~i~i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l 851 (965)
+.+.++.|.+.|++.+-++=-. + ..+..++.+.+.|-++- +=-|+ -|.+|+...++++.+-
T Consensus 100 --D~~svd~l~~~~v~~~KI~S~~-------~-------~N~pLL~~va~~gKPvi--LstGm-stl~Ei~~Ave~i~~~ 160 (350)
T 3g8r_A 100 --DEESVDLIEAHGIEIIKIASCS-------F-------TDWPLLERIARSDKPVV--ASTAG-ARREDIDKVVSFMLHR 160 (350)
T ss_dssp --SHHHHHHHHHTTCCEEEECSSS-------T-------TCHHHHHHHHTSCSCEE--EECTT-CCHHHHHHHHHHHHTT
T ss_pred --CHHHHHHHHHcCCCEEEECccc-------c-------cCHHHHHHHHhhCCcEE--EECCC-CCHHHHHHHHHHHHHc
Confidence 7899999999999988877311 0 11345556666666542 22333 5999999999999987
Q ss_pred CCCCCceeeccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeCCcc
Q psy8199 852 NPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKL 929 (965)
Q Consensus 852 ~~~~~~i~~~~~~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~ 929 (965)
+ .+.+-+....-+| ||. ..--++.+...+..+|...+-.+..-..-.......|+.+||. +++..+
T Consensus 161 g--~~viLlhC~s~YP-t~~-------~~~nL~aI~~Lk~~fp~lpVG~SdHt~g~~~~~~~AAvAlGA~--vIEkH~ 226 (350)
T 3g8r_A 161 G--KDLTIMHCVAEYP-TPD-------DHLHLARIKTLRQQYAGVRIGYSTHEDPDLMEPIMLAVAQGAT--VFEKHV 226 (350)
T ss_dssp T--CCEEEEECCCCSS-CCG-------GGCCTTHHHHHHHHCTTSEEEEEECCCSSCCHHHHHHHHTTCC--EEEEEB
T ss_pred C--CCEEEEecCCCCC-CCc-------ccCCHHHHHHHHHHCCCCCEEcCCCCCCCccHHHHHHHHcCCC--EEEEec
Confidence 7 4433322222222 221 1223666777788887654433311100001234578889997 566554
|
| >4gxw_A Adenosine deaminase; amidohydrolase, COG1816, EFI, structural genomics, hydrolase; 1.30A {Burkholderia ambifaria} | Back alignment and structure |
|---|
Probab=81.81 E-value=3.3 Score=44.98 Aligned_cols=78 Identities=12% Similarity=0.138 Sum_probs=56.6
Q ss_pred CCHHHHHHHHHHHHH---CCCCEEEEeeccCCCCcccHHHHHHHHHHHHhcCcEeEEecCCCC---HHHHHHHHHhCCCe
Q psy8199 715 LSIESVITAAQKAKS---DGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLN---ENQAYRLKKVGLDY 788 (965)
Q Consensus 715 ~~~eei~~~~~~~~~---~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~---~e~l~~Lk~aG~~~ 788 (965)
.++++..+.++.+.+ .++-.|-+.|.+.. .+...+.+.++..++.|+.++++.|... +...+.+...|.++
T Consensus 162 ~~~e~a~~~~~~a~~~~~~~VvG~dL~g~E~~---~p~~~f~~~f~~ar~~Gl~~t~HAGE~~~p~~~i~~al~~lga~R 238 (380)
T 4gxw_A 162 QDPDEAVAIVDWMKANRADEVAGIGIDYREND---RPPELFWKAYRDARAAGFRTTAHAGEFGMPWRNVETAVDLLHVDR 238 (380)
T ss_dssp SCHHHHHHHHHHHHHTCCTTBCEEEEESCCTT---CCGGGGHHHHHHHHHTTCEEEEEESCTTCCHHHHHHHHHTSCCSE
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEEeecCCCCC---CCHHHHHHHHHHHHHcCCCeeeeccccCCchHHHHHHHHHcCCcc
Confidence 456676666665544 36778888776543 3456788888888999999999998754 34455565689999
Q ss_pred EeccCCC
Q psy8199 789 YNHNLDT 795 (965)
Q Consensus 789 i~i~~es 795 (965)
|-+|+-.
T Consensus 239 IgHG~~~ 245 (380)
T 4gxw_A 239 VDHGYTI 245 (380)
T ss_dssp EEECGGG
T ss_pred cccceee
Confidence 9999866
|
| >3sz8_A 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Burkholderia pseudomallei} PDB: 3tmq_A* 3und_A* | Back alignment and structure |
|---|
Probab=81.27 E-value=29 Score=35.61 Aligned_cols=204 Identities=13% Similarity=0.114 Sum_probs=110.1
Q ss_pred CHHHHHHHHHHHHHC----CCCEEEEeeccC--C-----CCcccHHHHHHHHHHHH-hcCcEeEEecCCCCHHHHHHHHH
Q psy8199 716 SIESVITAAQKAKSD----GATRFCMGAAWR--E-----LKDRDLDNIENMICEVK-KIGLETCLTLGMLNENQAYRLKK 783 (965)
Q Consensus 716 ~~eei~~~~~~~~~~----g~~~i~l~~g~~--~-----~~~~~~~~~~~~~~~i~-~~~~~i~~~~~~~~~e~l~~Lk~ 783 (965)
++|++++.++.+++. ++..++-.+.+- . +.-..++.=++++++++ +.|+.+.+.. .+.+.++.+.+
T Consensus 32 ~~e~~~~~A~~lk~~~~~~~~~~v~k~~f~KapRTs~~sf~G~g~~~GL~~L~~~~~e~Glp~~Tev--~d~~~v~~l~~ 109 (285)
T 3sz8_A 32 SLDFTLDVCGEYVAVTRKLGIPFVFKASFDKANRSSIHSYRGVGLDEGLKIFAEVKARFGVPVITDV--HEAEQAAPVAE 109 (285)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCEEEEEESCCTTCSSTTSCCCSCHHHHHHHHHHHHHHHCCCEEEEC--CSGGGHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHhheeeeEEEeecccCCCCCCCCcCCcCHHHHHHHHHHHHHhcCCeEEEEe--CCHHHHHHHHH
Confidence 578888888777654 455555544331 0 11112455566666665 4788887664 47788888888
Q ss_pred hCCCeEeccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccc
Q psy8199 784 VGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNL 863 (965)
Q Consensus 784 aG~~~i~i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~ 863 (965)
. ++.+.++--. . .+ .+.++.+.+.|.+| .+=-|+.-|.+|+...++.+++-+ -..|.+.
T Consensus 110 ~-vd~lqIgA~~--------~--~n----~~LLr~va~~gkPV--ilK~G~~~t~~ei~~ave~i~~~G--n~~i~L~-- 168 (285)
T 3sz8_A 110 I-ADVLQVPAFL--------A--RQ----TDLVVAIAKAGKPV--NVKKPQFMSPTQLKHVVSKCGEVG--NDRVMLC-- 168 (285)
T ss_dssp T-CSEEEECGGG--------T--TC----HHHHHHHHHTSSCE--EEECCTTSCGGGTHHHHHHHHHTT--CCCEEEE--
T ss_pred h-CCEEEECccc--------c--CC----HHHHHHHHccCCcE--EEeCCCCCCHHHHHHHHHHHHHcC--CCcEEEE--
Confidence 7 9988888311 0 01 12444444555554 222333347888888888888876 3333332
Q ss_pred cccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceec-cc--------------cccccchhhHHHHhhcCccEEeeCCc
Q psy8199 864 VQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRM-SA--------------GRKEMGETTQAFCFLAGANSIFYGDK 928 (965)
Q Consensus 864 ~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i-~~--------------~~~~~~~~~~~~~l~~Gan~~~~g~~ 928 (965)
.-|+-+ ..+ ...-.++.+...|..+|+..+-. +. ++-.+-..+...|+.+||++++++..
T Consensus 169 --erg~~y-~~~--~~~vdl~~i~~lk~~~~~~pV~~D~sHs~q~p~~~~~~s~G~r~~v~~~a~AAvA~GA~gl~IE~H 243 (285)
T 3sz8_A 169 --ERGSSF-GYD--NLVVDMLGFRQMAETTGGCPVIFDVTHSLQCRDPLGDASGGRRRQVLDLARAGIAVGIAGLFLEAH 243 (285)
T ss_dssp --ECCEEC-SSS--CEECCTTHHHHHHHHTTSCCEEEETTTTCC---------------HHHHHHHHHHHCCSEEEEEEE
T ss_pred --eCCCCC-CCC--cCccCHHHHHHHHHhCCCCCEEEeCCCccccCCCcCCCCCCchhhHHHHHHHHHHhCCCEEEEEec
Confidence 123311 111 10012444555666665332322 11 11111145667889999999999876
Q ss_pred ccc----CCCC---CChhhHHHHHHc
Q psy8199 929 LLT----TDNT---KTNDDSKLLKKL 947 (965)
Q Consensus 929 ~~t----~~~~---~~~~~~~~~~~~ 947 (965)
+.- +++. ++++..+|++++
T Consensus 244 ~~pd~al~D~~~sl~p~el~~lv~~i 269 (285)
T 3sz8_A 244 PDPDRARCDGPSALPLHQLEGLLSQM 269 (285)
T ss_dssp SCGGGCSCSSCCCEEGGGHHHHHHHH
T ss_pred cChhccCCchhhccCHHHHHHHHHHH
Confidence 531 1332 456666666543
|
| >3gk0_A PNP synthase, pyridoxine 5'-phosphate synthase; decode, ssgcid, niaid, SBRI, cytoplasm, pyridoxine biosynthesis, transferase; HET: DXP; 2.28A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=81.26 E-value=3.3 Score=41.50 Aligned_cols=110 Identities=13% Similarity=0.191 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHCCCCEEEEee---------ccCCCCcccHHHHHHHHHHHHhcCcEeEEecCCCCHHHHHHHHHhCCC
Q psy8199 717 IESVITAAQKAKSDGATRFCMGA---------AWRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLD 787 (965)
Q Consensus 717 ~eei~~~~~~~~~~g~~~i~l~~---------g~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~e~l~~Lk~aG~~ 787 (965)
.+++++.+.+.+ -..++|+- |+.. .....+.+.++++.+++.|+.+++=.. .+.+.++.-++.|.+
T Consensus 104 t~emi~ial~~k---P~~vtLVPEkreE~TTegGlD-v~~~~~~L~~~i~~L~~~GIrVSLFID-pd~~qI~aA~~~GAd 178 (278)
T 3gk0_A 104 TPEMLDIACEIR---PHDACLVPEKRSELTTEGGLD-VVGHFDAVRAACKQLADAGVRVSLFID-PDEAQIRAAHETGAP 178 (278)
T ss_dssp SHHHHHHHHHHC---CSEEEECCCSGGGBCSSSSBC-TTTTHHHHHHHHHHHHHTTCEEEEEEC-SCHHHHHHHHHHTCS
T ss_pred CHHHHHHHHHcC---CCEEEECCCCCCCcCCCcchh-hhccHHHHHHHHHHHHHCCCEEEEEeC-CCHHHHHHHHHhCcC
Confidence 467777776554 57788873 1111 234578999999999999999888665 479999999999999
Q ss_pred eEeccCCCCHHHHhcccC----CCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHH
Q psy8199 788 YYNHNLDTSPKLYGDIIS----TRDYENRLNTLKNVRNVGINICCGGIIGLSESRD 839 (965)
Q Consensus 788 ~i~i~~es~~~~~~~i~~----~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~e 839 (965)
+|.+-- +.|..-.. ...++...++.+.+++.|+.|+. |+|-+.+
T Consensus 179 ~IELhT----G~YA~a~~~~~~~~el~rl~~aA~~A~~lGL~VnA----GHGL~y~ 226 (278)
T 3gk0_A 179 VIELHT----GRYADAHDAAEQQREFERIATGVDAGIALGLKVNA----GHGLHYT 226 (278)
T ss_dssp EEEECC----HHHHTCSSHHHHHHHHHHHHHHHHHHHHTTCEEEE----CTTCCTT
T ss_pred EEEEec----chhhccCCchhHHHHHHHHHHHHHHHHHcCCEEec----CCCCCHH
Confidence 998754 33333221 12356777788888899998875 5653333
|
| >1w0m_A TIM, triosephosphate isomerase; glycolysis, gluconeogenesis; 2.5A {Thermoproteus tenax} SCOP: c.1.1.1 | Back alignment and structure |
|---|
Probab=81.16 E-value=14 Score=36.73 Aligned_cols=132 Identities=14% Similarity=0.224 Sum_probs=81.9
Q ss_pred HHHHHHhCCCeEeccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCc
Q psy8199 778 AYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPES 857 (965)
Q Consensus 778 l~~Lk~aG~~~i~i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~ 857 (965)
...++++|++.+.++.--- ...+.+..+-++.++++|+.+ |+=.||+.|. +.+..++ +..
T Consensus 78 ~~~l~~~Ga~~VllghseR---------R~~~~e~~~k~~~A~~~GL~~----ivcVge~~e~-----~~~~~~~--~~i 137 (226)
T 1w0m_A 78 LENIKEAGGSGVILNHSEA---------PLKLNDLARLVAKAKSLGLDV----VVCAPDPRTS-----LAAAALG--PHA 137 (226)
T ss_dssp HHHHHHHTCCEEEECCTTS---------CCBHHHHHHHHHHHHHTTCEE----EEEESSHHHH-----HHHHHTC--CSE
T ss_pred HHHHHHcCCCEEEEeeeec---------cCCHHHHHHHHHHHHHCCCEE----EEEeCCHHHH-----HHHhcCC--CCE
Confidence 8889999999999985211 122344677788899999854 3335676664 3345666 555
Q ss_pred eeeccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeCCccccCC
Q psy8199 858 VPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTD 933 (965)
Q Consensus 858 i~~~~~~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~ 933 (965)
|.+++.-- -||-..- ...++++.-++.+..|.+.++..+ +..+-... .+....+...|+|++.+|+..+...
T Consensus 138 Iayep~wa-iGtG~~v-~t~~~d~~~~~~~~ir~~~~~~~i-lyggsV~~-~n~~~~~~~~giDG~LVG~a~l~a~ 209 (226)
T 1w0m_A 138 VAVEPPEL-IGTGRAV-SRYKPEAIVETVGLVSRHFPEVSV-ITGAGIES-GDDVAAALRLGTRGVLLASAAVKAK 209 (226)
T ss_dssp EEECCGGG-TTTSCCH-HHHCHHHHHHHHHHHHHHCTTSEE-EEESSCCS-HHHHHHHHHTTCSEEEECHHHHTCS
T ss_pred EEEcChhh-hccCCCC-CCCChhHHHHHHHHHHhccCCCEE-EEeCCCCc-HHHHHHHHhCCCCEEEECHHHHCCc
Confidence 55442211 3442110 135677788888888988765533 33333232 3444455789999999999765543
|
| >3oa3_A Aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, pathogenic fungus; 1.60A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=80.49 E-value=55 Score=33.53 Aligned_cols=180 Identities=14% Similarity=0.091 Sum_probs=108.5
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHhcCcEeEEecCCC----CH----HHHHHHHHhC
Q psy8199 714 ILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGML----NE----NQAYRLKKVG 785 (965)
Q Consensus 714 ~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~----~~----e~l~~Lk~aG 785 (965)
..+.++|.+.++++.+.|+..+|+..+ ......+ .++..++.+++-.|+. +. ...+...+.|
T Consensus 70 ~~T~~dI~~lc~eA~~~g~aaVCV~P~-------~V~~a~~---~L~~s~V~V~tVigFP~G~~~~~~Kv~Ea~~Ai~~G 139 (288)
T 3oa3_A 70 SATGSQIDVLCAEAKEYGFATVCVRPD-------YVSRAVQ---YLQGTQVGVTCVIGFHEGTYSTDQKVSEAKRAMQNG 139 (288)
T ss_dssp TCCHHHHHHHHHHHHHHTCSEEEECGG-------GHHHHHH---HTTTSSCEEEEEESTTTSCSCHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHhcCCcEEEECHH-------HHHHHHH---HcCCCCCeEEEEeCCCCCCCcHHHHHHHHHHHHHcC
Confidence 367899999999999999999999211 2233333 3345678887755432 22 2455566789
Q ss_pred CCeEeccCCCCHHHHhcccCCCCHHHHHHHHHHHHHc-CCceeeeEEEecC-CCHHHHHHHHHHHHhcCCCCCceeeccc
Q psy8199 786 LDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNV-GINICCGGIIGLS-ESRDQRAELIFQLANLNPYPESVPINNL 863 (965)
Q Consensus 786 ~~~i~i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~-Gi~v~~~~i~Gl~-et~ed~~~~l~~l~~l~~~~~~i~~~~~ 863 (965)
.+-|.+-+.- ..+ +...++...+-++.++++ +-+ ..-+|+-.+ -+.+++....+...+.+ .++|.-+
T Consensus 140 AdEIDmVINi-----g~l-k~g~~~~v~~eI~~V~~a~~~~-~lKVIlEt~~Lt~eei~~A~~ia~eaG--ADfVKTS-- 208 (288)
T 3oa3_A 140 ASELDMVMNY-----PWL-SEKRYTDVFQDIRAVRLAAKDA-ILKVILETSQLTADEIIAGCVLSSLAG--ADYVKTS-- 208 (288)
T ss_dssp CSEEEEECCH-----HHH-HTTCHHHHHHHHHHHHHHTTTS-EEEEECCGGGCCHHHHHHHHHHHHHTT--CSEEECC--
T ss_pred CCEEEEEeeh-----hhh-cCCcHHHHHHHHHHHHHHhcCC-CceEEEECCCCCHHHHHHHHHHHHHcC--CCEEEcC--
Confidence 9988755421 111 134566666666666663 322 244555444 57888999999999999 8998755
Q ss_pred cccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccE
Q psy8199 864 VQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANS 922 (965)
Q Consensus 864 ~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~ 922 (965)
|=+. ....+.+++.-+-.+.+..-+...+.++++... .+.....+.+||+.
T Consensus 209 -----TGf~-~~GAT~edv~lmr~~v~~~g~~v~VKAAGGIrt--~edAl~mi~aGA~R 259 (288)
T 3oa3_A 209 -----TGFN-GPGASIENVSLMSAVCDSLQSETRVKASGGIRT--IEDCVKMVRAGAER 259 (288)
T ss_dssp -----CSSS-SCCCCHHHHHHHHHHHHHSSSCCEEEEESSCCS--HHHHHHHHHTTCSE
T ss_pred -----CCCC-CCCCCHHHHHHHHHHHHHhCCCceEEEeCCCCC--HHHHHHHHHcCCce
Confidence 1111 123455554333333332235566777665443 24455668999995
|
| >1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A* | Back alignment and structure |
|---|
Probab=80.09 E-value=47 Score=32.57 Aligned_cols=167 Identities=9% Similarity=0.066 Sum_probs=88.4
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHhcCc---EeEEecCCCCHHHHHHHHHhCCCeEecc
Q psy8199 716 SIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGL---ETCLTLGMLNENQAYRLKKVGLDYYNHN 792 (965)
Q Consensus 716 ~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~~~---~i~~~~~~~~~e~l~~Lk~aG~~~i~i~ 792 (965)
+.+++ +.+..+.+.|+..+.+- ....+.+.+.++++.+++... .+.++ +.++...++|++.+.++
T Consensus 28 ~~~~l-~~~~~~~~~G~~~v~lr-----~~~~~~~~~~~~~~~l~~~~~~~~~l~v~------~~~~~a~~~gad~v~l~ 95 (221)
T 1yad_A 28 PVEEL-ARIIITIQNEVDFIHIR-----ERSKSAADILKLLDLIFEGGIDKRKLVMN------GRVDIALFSTIHRVQLP 95 (221)
T ss_dssp CHHHH-HHHHHHHGGGCSEEEEC-----CTTSCHHHHHHHHHHHHHTTCCGGGEEEE------SCHHHHHTTTCCEEEEC
T ss_pred CcchH-HHHHHHHHCCCCEEEEc-----cCCCCHHHHHHHHHHHHHhcCcCCeEEEe------ChHHHHHHcCCCEEEeC
Confidence 34554 33666777799877662 223556777888888876432 34444 34577889999999988
Q ss_pred CCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecC-CCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCC
Q psy8199 793 LDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLS-ESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPL 871 (965)
Q Consensus 793 ~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~-et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l 871 (965)
.+.. . .+.++.... |+. +|.. .|.++. ..+.+.+ .+.+.+..+++.+..
T Consensus 96 ~~~~-----------~----~~~~~~~~~-~~~------ig~sv~t~~~~----~~a~~~g--aD~i~~~~~f~~~~~-- 145 (221)
T 1yad_A 96 SGSF-----------S----PKQIRARFP-HLH------IGRSVHSLEEA----VQAEKED--ADYVLFGHVFETDCK-- 145 (221)
T ss_dssp TTSC-----------C----HHHHHHHCT-TCE------EEEEECSHHHH----HHHHHTT--CSEEEEECCC-------
T ss_pred CCcc-----------C----HHHHHHHCC-CCE------EEEEcCCHHHH----HHHHhCC--CCEEEECCccccCCC--
Confidence 5431 1 122233322 433 3331 466654 3344567 788887755332111
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeCCccccC
Q psy8199 872 YGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTT 932 (965)
Q Consensus 872 ~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~~t~ 932 (965)
...++.+ . +.+...+... +..+-+.++- . .+.-..++.+||+++.+|..+...
T Consensus 146 ~g~~~~~-~---~~l~~~~~~~-~~pvia~GGI-~--~~nv~~~~~~Ga~gv~vgs~i~~~ 198 (221)
T 1yad_A 146 KGLEGRG-V---SLLSDIKQRI-SIPVIAIGGM-T--PDRLRDVKQAGADGIAVMSGIFSS 198 (221)
T ss_dssp -----CH-H---HHHHHHHHHC-CSCEEEESSC-C--GGGHHHHHHTTCSEEEESHHHHTS
T ss_pred CCCCCCC-H---HHHHHHHHhC-CCCEEEECCC-C--HHHHHHHHHcCCCEEEEhHHhhCC
Confidence 0111112 2 2222233333 3334444443 2 333345578999999999877543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 965 | ||||
| d1r30a_ | 312 | c.1.28.1 (A:) Biotin synthase {Escherichia coli [T | 3e-77 | |
| d2byla1 | 404 | c.67.1.4 (A:36-439) Ornithine aminotransferase {Hu | 8e-71 | |
| d1sffa_ | 425 | c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GA | 4e-70 | |
| d1vefa1 | 387 | c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine a | 8e-68 | |
| d1z7da1 | 404 | c.67.1.4 (A:7-410) Ornithine aminotransferase {Pla | 2e-65 | |
| d1s0aa_ | 429 | c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxonona | 3e-61 | |
| d2gsaa_ | 427 | c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase | 1e-56 | |
| d1zoda1 | 431 | c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {P | 2e-49 | |
| d1v9fa_ | 250 | d.265.1.3 (A:) Ribosomal large subunit pseudouridi | 4e-41 | |
| d1ohwa_ | 461 | c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GA | 7e-40 | |
| d1v9ka_ | 227 | d.265.1.3 (A:) Ribosomal large subunit pseudouridi | 2e-38 | |
| d2v1pa1 | 467 | c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptop | 3e-27 | |
| d1ax4a_ | 465 | c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanas | 2e-23 | |
| d1c7ga_ | 456 | c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbi | 5e-07 | |
| d1vioa1 | 174 | d.265.1.3 (A:58-231) Ribosomal small subunit pseud | 0.001 |
| >d1r30a_ c.1.28.1 (A:) Biotin synthase {Escherichia coli [TaxId: 562]} Length = 312 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Radical SAM enzymes family: Biotin synthase domain: Biotin synthase species: Escherichia coli [TaxId: 562]
Score = 253 bits (646), Expect = 3e-77
Identities = 175/303 (57%), Positives = 230/303 (75%)
Query: 648 LDEVINLFNLPFNDLLFRAQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHYNT 707
L +V LF P DLLF AQ+VHR++FD +++++ LLSIKTG C EDC YCPQS+ Y T
Sbjct: 6 LSQVTELFEKPLLDLLFEAQQVHRQHFDPRQVQVSTLLSIKTGACPEDCKYCPQSSRYKT 65
Query: 708 EITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETC 767
+ A +++ +E V+ +A+KAK+ G+TRFCMGAAW+ +RD+ +E M+ VK +GLE C
Sbjct: 66 GLEAERLMEVEQVLESARKAKAAGSTRFCMGAAWKNPHERDMPYLEQMVQGVKAMGLEAC 125
Query: 768 LTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINIC 827
+TLG L+E+QA RL GLDYYNHNLDTSP+ YG+II+TR Y+ RL+TL+ VR+ GI +C
Sbjct: 126 MTLGTLSESQAQRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVC 185
Query: 828 CGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIA 887
GGI+GL E+ RA L+ QLANL PESVPIN LV++KGTPL + +D +FIRTIA
Sbjct: 186 SGGIVGLGETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAFDFIRTIA 245
Query: 888 VARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLLKKL 947
VARI MPTS +R+SAGR++M E TQA CF+AGANSIFYG KLLTT N + + D +L +KL
Sbjct: 246 VARIMMPTSYVRLSAGREQMNEQTQAMCFMAGANSIFYGCKLLTTPNPEEDKDLQLFRKL 305
Query: 948 GIN 950
G+N
Sbjct: 306 GLN 308
|
| >d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 404 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 238 bits (609), Expect = 8e-71
Identities = 102/405 (25%), Positives = 176/405 (43%), Gaps = 37/405 (9%)
Query: 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEK 305
L G++Y D +SS GH + I ALK+Q++KL S + V+ E+
Sbjct: 33 IYLWDVEGRKYFDFLSSISAVNQGHCHPKIVNALKSQVDKLTLT--SRAFYNNVLGEYEE 90
Query: 306 LSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLN--KKKFICLQNSYHGETLGA 363
+ + G A E A K++ + Y + K K + ++ G TL A
Sbjct: 91 YITKLFNYHKVLPMNT-GVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSA 149
Query: 364 LAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIA 423
++ + + + + + II D + LE L+ +A
Sbjct: 150 ISSSTDPTSYDGFGPFMPGFDIIPYND-----------------LPALERALQ--DPNVA 190
Query: 424 AIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIW 483
A ++EP +Q G+++ D YL VRE+C + + IADEI G RTG++ A ++ +
Sbjct: 191 AFMVEP-IQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVR 249
Query: 484 PDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLE 543
PD + L K ++GG P+S V+ D I +I H +Y GNPL C A+A LE
Sbjct: 250 PDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGE------HFSTYGGNPLGCRVAIAALE 303
Query: 544 IFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKF 603
+ ++N+ + + + L L + R KG++ A I E + + K
Sbjct: 304 VLEEENLAENADKLGIILRNELMKL-PSDVVTAVRGKGLLNA----IVIKETKDWDAWKV 358
Query: 604 FVAALKNELLLRPI-GNTVYLMPPYILNKNEIQHMTSAIFQTFNE 647
+ N LL +P G+ + PP ++ ++E++ I +T
Sbjct: 359 CLRLRDNGLLAKPTHGDIIRFAPPLVIKEDELRESIEIINKTILS 403
|
| >d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]} Length = 425 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Escherichia coli [TaxId: 562]
Score = 237 bits (605), Expect = 4e-70
Identities = 106/411 (25%), Positives = 180/411 (43%), Gaps = 27/411 (6%)
Query: 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEK 305
++ G+ YLD V GH + + A++ QL KL H L ++P ++L E
Sbjct: 32 CRVWDVEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEI 91
Query: 306 LSS-LTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGAL 364
++ + + G+ AVE A+K++ + I +YHG T L
Sbjct: 92 MNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATK------RSGTIAFSGAYHGRTHYTL 145
Query: 365 AVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAA 424
A+T + L+ +E A IAA
Sbjct: 146 ALTGKVNPYSAGMGLMPGHVYRALYPCPLHGI----SEDDAIASIHRIFKNDAAPEDIAA 201
Query: 425 IIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWP 484
I+IEP VQ GG +++ +R +C+ + I LIADE+ G GRTG FA E + P
Sbjct: 202 IVIEP-VQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGVAP 260
Query: 485 DFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEI 544
D +K I GG+ PL+ V ++ +++ +Y+GNP+AC AAL L++
Sbjct: 261 DLTTFAKSIAGGF-PLAGVTGRAEVMDAVAP------GGLGGTYAGNPIACVAALEVLKV 313
Query: 545 FNKDNILQRISQDMKKITKALTSLI-THPKIINFRQKGMIWAFDVIIEDPEQIETFSK-- 601
F ++N+LQ+ + +K+ L ++ HP+I + R G + A + + ED + + +K
Sbjct: 314 FEQENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAMIAIE-LFEDGDHNKPDAKLT 372
Query: 602 -KFFVAALKNELLLRPIG---NTVYLMPPYILNKNEIQHMTSAIFQTFNEL 648
+ A L+L G N + ++ P + +I+ I Q F+E
Sbjct: 373 AEIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQGLEIISQCFDEA 423
|
| >d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]} Length = 387 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Acetylornithine/acetyl-lysine aminotransferase ArgD species: Thermus thermophilus [TaxId: 274]
Score = 229 bits (585), Expect = 8e-68
Identities = 96/396 (24%), Positives = 164/396 (41%), Gaps = 42/396 (10%)
Query: 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEK 305
+++ G Y+D + + V GH N + +A+K Q L + L +
Sbjct: 29 ARVWDAEGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETLMAMP-QTLPTPMRGEFYRT 87
Query: 306 LSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALA 365
L+++ +L F + G A E ALK + + +KKF+ + G T+G+L+
Sbjct: 88 LTAILPPELNRVFPVNSGTEANEAALKFARAHTG------RKKFVAAMRGFSGRTMGSLS 141
Query: 366 VTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAI 425
VT ++E + L+ I D +E L + + AA+
Sbjct: 142 VTWEPKYREPFLPLVEPVEFIPYND--------------------VEALKRAVDEETAAV 181
Query: 426 IIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPD 485
I+EP VQ GG+ +L+ REI LI DEI G GRTGK FA EH I PD
Sbjct: 182 ILEP-VQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFGIVPD 240
Query: 486 FLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIF 545
L L+K + GG ++ H ++ GNPLA A +A +
Sbjct: 241 ILTLAKALGGGVPL-------GVAVMREEVARSMPKGGHGTTFGGNPLAMAAGVAAIRYL 293
Query: 546 NKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFV 605
+ + +R ++ + L ++ PKI R G++ ++ + I K+ V
Sbjct: 294 ERTRLWERAAELGPWFMEKLRAI-PSPKIREVRGMGLMVGLELKEKAAPYIARLEKEHRV 352
Query: 606 AALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAI 641
L L+ + +PP ++ K +++ + A+
Sbjct: 353 ------LALQAGPTVIRFLPPLVIEKEDLERVVEAV 382
|
| >d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]} Length = 404 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Plasmodium yoelii yoelii [TaxId: 73239]
Score = 223 bits (569), Expect = 2e-65
Identities = 90/406 (22%), Positives = 157/406 (38%), Gaps = 34/406 (8%)
Query: 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEK 305
+ + KRY D +S++ GH + I A+ NQ L + P+
Sbjct: 31 VFVYDVNDKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLTICSRA-FFSVPLGICERY 89
Query: 306 LSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALA 365
L++L Y A+ L + Y K N K + +N++ G TLG ++
Sbjct: 90 LTNLLGYDKVLMMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCIS 149
Query: 366 VTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAI 425
+ + + + + D + + + + A
Sbjct: 150 ASTTKKCTSNFGPFAPQFSKVPYDDLEALEE-------------------ELKDPNVCAF 190
Query: 426 IIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPD 485
I+EP +Q G+I+ YL+ V +IC YN+ +ADE+ G GRTGK H + PD
Sbjct: 191 IVEP-IQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCVHHYNVKPD 249
Query: 486 FLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIF 545
+ L K ++GG+ P+S V+ D I I H +Y GNPLA + L +
Sbjct: 250 VILLGKALSGGHYPISAVLANDDIMLVIKP------GEHGSTYGGNPLAASICVEALNVL 303
Query: 546 NKDNILQRISQDMKKITKALTSLIT-HPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFF 604
+ + + + + L + + + R KG++ A + E
Sbjct: 304 INEKLCENAEKLGGPFLENLKRELKDSKIVRDVRGKGLLCAIEFKNELVN-----VLDIC 358
Query: 605 VAALKNELLLRPIG-NTVYLMPPYILNKNEIQHMTSAIFQTFNELD 649
+ +N L+ R + T+ L PP + K ++ T I +T D
Sbjct: 359 LKLKENGLITRDVHDKTIRLTPPLCITKEQLDECTEIIVKTVKFFD 404
|
| >d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]} Length = 429 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA species: Escherichia coli [TaxId: 562]
Score = 212 bits (541), Expect = 3e-61
Identities = 141/403 (34%), Positives = 222/403 (55%), Gaps = 15/403 (3%)
Query: 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEK 305
+LI G+R +D +SSWW + G+++ +N A+K+Q++ + HVM +TH P I+L K
Sbjct: 35 CELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHAPAIELCRK 94
Query: 306 LSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALA 365
L ++T L F G+ AVEVA+KM+ YW K +++F+ +N YHG+T GA++
Sbjct: 95 LVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAK-GEARQRFLTFRNGYHGDTFGAMS 153
Query: 366 VTNI-QSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAA 424
V + S ++ L + P SR + + + + + + ++IAA
Sbjct: 154 VCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMA------AHRHEIAA 207
Query: 425 IIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWP 484
+IIEP+VQ AGGM MY +LK +R+IC+ I LIADEIA G GRTGK FACEHAEI P
Sbjct: 208 VIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHAEIAP 267
Query: 485 DFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEI 544
D LCL K +TGG + LS +TT ++ + F+H ++ GNPLAC AA A+L I
Sbjct: 268 DILCLGKALTGGTMTLSATLTTREVAET-ISNGEAGCFMHGPTFMGNPLACAAANASLAI 326
Query: 545 FNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFF 604
+ Q+++ ++ + L + + R G I + P + K F
Sbjct: 327 LESGDWQQQVADIEVQLREQLAPARDAEMVADVRVLGAIGVVE--TTHPVNMAALQKFF- 383
Query: 605 VAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNE 647
++ + +RP G +YLMPPYI+ ++Q +T+A+ + +
Sbjct: 384 ---VEQGVWIRPFGKLIYLMPPYIILPQQLQRLTAAVNRAVQD 423
|
| >d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]} Length = 427 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Glutamate-1-semialdehyde aminomutase (aminotransferase) species: Synechococcus sp., strain GR6 [TaxId: 1131]
Score = 199 bits (507), Expect = 1e-56
Identities = 77/413 (18%), Positives = 146/413 (35%), Gaps = 39/413 (9%)
Query: 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEK 305
+ G RY+D + +W + GH++ + +ALK + K + ++
Sbjct: 44 AYAWDVDGNRYIDYVGTWGPAICGHAHPEVIEALKVAMEKGTSFGAPCALENVLAEMVND 103
Query: 306 LSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALA 365
+ + + G A L++ Y + K I + YHG L
Sbjct: 104 AVP----SIEMVRFVNSGTEACMAVLRLMRAYT------GRDKIIKFEGCYHGHADMFLV 153
Query: 366 VTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSAN--EIARCAIFDLEILLKKNHNKIA 423
+ + P S + K +AN + ++ L +N +IA
Sbjct: 154 KAG------------SGVATLGLPSSPGVPKKTTANTLTTPYNDLEAVKALFAENPGEIA 201
Query: 424 AIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIW 483
+I+EP + G I+ D+ +L+ +REI ++ L+ DE+ G E +
Sbjct: 202 GVILEP-IVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTGFRIA-YGGVQEKFGVT 259
Query: 484 PDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLE 543
PD L K I GG + +I + + + SGNPLA A + TLE
Sbjct: 260 PDLTTLGKIIGGGLPVGA-YGGKREIMQLVA---PAGPMYQAGTLSGNPLAMTAGIKTLE 315
Query: 544 IFNKDNILQRISQDMKKITKALTSLITHPKIINF--RQKGMIWAF--DVIIEDPEQIETF 599
+ + + + Q K+++ L ++ + GM F + + + E +
Sbjct: 316 LLRQPGTYEYLDQITKRLSDGLLAIAQETGHAACGGQVSGMFGFFFTEGPVHNYEDAKKS 375
Query: 600 S----KKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNEL 648
+F L+ + L P + +I +A + L
Sbjct: 376 DLQKFSRFHRGMLEQGIYLAPSQF-EAGFTSLAHTEEDIDATLAAARTVMSAL 427
|
| >d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]} Length = 431 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Dialkylglycine decarboxylase species: Pseudomonas cepacia [TaxId: 292]
Score = 179 bits (453), Expect = 2e-49
Identities = 90/410 (21%), Positives = 171/410 (41%), Gaps = 21/410 (5%)
Query: 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEK 305
S + G+ LD S + GH + I + KL+H + S + +PV+ L+ +
Sbjct: 33 SFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDH-LFSEMLSRPVVDLATR 91
Query: 306 LSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALA 365
L+++T L S GA + E A++M+ K + + S+HG T A +
Sbjct: 92 LANITPPGLDRALLLSTGAESNEAAIRMAKLVT------GKYEIVGFAQSWHGMTGAAAS 145
Query: 366 VTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAI 425
T K + + + I R + N A + + +++ +++ +AA
Sbjct: 146 ATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAF 205
Query: 426 IIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPD 485
I EP + +GG+I Y+ ++ C + LI DE G GRTG FAC+ + PD
Sbjct: 206 IAEP-ILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQRDGVTPD 264
Query: 486 FLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIF 545
L LSK + G ++V +I + + +L ++ +PL L L++
Sbjct: 265 ILTLSKTLGAGLPLAAIVT-----SAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVV 319
Query: 546 NKDNILQRISQDMKKITKALTSLIT-HPKIINFRQKGMIWAFDVII--EDPEQIETFSKK 602
+D ++ R + ++ + L L+ I + R +G++ +++ E + K
Sbjct: 320 QRDGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVKDRRTKEPADGLGAK 379
Query: 603 FFVAALKNELL-----LRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNE 647
+ L L +G + PP ++++EI S + Q
Sbjct: 380 ITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQAIER 429
|
| >d1v9fa_ d.265.1.3 (A:) Ribosomal large subunit pseudouridine synthase D, RluD {Escherichia coli [TaxId: 562]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Pseudouridine synthase superfamily: Pseudouridine synthase family: Pseudouridine synthase RsuA/RluD domain: Ribosomal large subunit pseudouridine synthase D, RluD species: Escherichia coli [TaxId: 562]
Score = 149 bits (376), Expect = 4e-41
Identities = 98/234 (41%), Positives = 138/234 (58%), Gaps = 17/234 (7%)
Query: 27 IKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKN 86
I LDI+YED +III+NK LVVHP GN GT+ + LL YP + +VPRAGIVHRLDK+
Sbjct: 6 IPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHRLDKD 65
Query: 87 SSGLMVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTV 146
++GLMVVAK++ + LV L+ + R+Y A+ G G ++ I R+P R M V
Sbjct: 66 TTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISRHPTKRTHMAV 125
Query: 147 SKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGK 206
KPA+T+Y + + + +R L+TGRTHQIRVHM + H +VGD +YG
Sbjct: 126 HP--MGKPAVTHYRIMEH----FRVHTRLRLRLETGRTHQIRVHMAHITHPLVGDPVYGG 179
Query: 207 KYSKS-----------LIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
+ F+RQALHA L L HP + ++++W +P D+ +LI
Sbjct: 180 RPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELI 233
|
| >d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]} Length = 461 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Pig (Sus scrofa) [TaxId: 9823]
Score = 152 bits (383), Expect = 7e-40
Identities = 79/435 (18%), Positives = 143/435 (32%), Gaps = 52/435 (11%)
Query: 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKP----VIK 301
+ L+ G R LD S G+S+ + K ++ N + L P V K
Sbjct: 45 NYLVDVDGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFINRPALGILPPENFVEK 104
Query: 302 LSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKG------------------- 342
L E L S+ + + G+ + E A K F ++ +K
Sbjct: 105 LRESLLSVAPKGMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQA 164
Query: 343 -FLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNK----TYIITTPDSRNINKG 397
+ ++HG T+G LA T+ ++ +I + + P + +
Sbjct: 165 PGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKEN 224
Query: 398 NSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNI 457
+ DL + +K +A II+EP +Q GG + + +R+I +
Sbjct: 225 QQEEARCLEEVEDLIVKYRKKKKTVAGIIVEP-IQSEGGDNHASDDFFRKLRDISRKHGC 283
Query: 458 HLIADEIAVGCGRTGKFFACEHAEIW--PDFLCLSKGITGGYLPLSLVMTTDKIYNSIYY 515
+ DE+ G G TGKF+A EH + D + SK + G + Y
Sbjct: 284 AFLVDEVQTGGGSTGKFWAHEHWGLDDPADVMTFSKKMMTGGFFHKEEFRPNAPYRIFNT 343
Query: 516 KNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLIT-HPKI 574
+ N + ++L + K + L L +P+
Sbjct: 344 WLGDPSKNLLLAEVINIIKRE------------DLLSNAAHAGKVLLTGLLDLQARYPQF 391
Query: 575 I-NFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG-NTVYLMPPYILNKN 632
I R +G +FD E K A ++L G ++ P + +
Sbjct: 392 ISRVRGRGTFCSFDTPDES------IRNKLISIARNKGVMLGGCGDKSIRFRPTLVFRDH 445
Query: 633 EIQHMTSAIFQTFNE 647
+ +
Sbjct: 446 HAHLFLNIFSDILAD 460
|
| >d1v9ka_ d.265.1.3 (A:) Ribosomal large subunit pseudouridine synthase C, RluC {Escherichia coli [TaxId: 562]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Pseudouridine synthase superfamily: Pseudouridine synthase family: Pseudouridine synthase RsuA/RluD domain: Ribosomal large subunit pseudouridine synthase C, RluC species: Escherichia coli [TaxId: 562]
Score = 141 bits (355), Expect = 2e-38
Identities = 68/226 (30%), Positives = 110/226 (48%), Gaps = 15/226 (6%)
Query: 31 IIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSSGL 90
I+YED+ I++LNK +G VH G G + + L + P +VHRLD+++SG+
Sbjct: 3 IMYEDDHILVLNKPSGTAVHGGSGLSFGVI-EGLRALRP---EARFLELVHRLDRDTSGV 58
Query: 91 MVVAKSIKSYIHLVNQLKMHIVQRKYLAMVWGI-PKLNGMINAAIMRNPHNRIKMTVSKN 149
++VAK + L QL+ +Q+ YLA+V G + A +++N + V +
Sbjct: 59 LLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVS 118
Query: 150 FNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGKKYS 209
KP+ T ++ +L+RC+ TGRTHQIRVH Q+ GH I D+ YG +
Sbjct: 119 QEGKPSETRFKVEERY----AFATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREF 174
Query: 210 ------KSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDDISKLI 249
NR LHA L HP ++ + + + + +
Sbjct: 175 DRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGLKRCL 220
|
| >d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} Length = 467 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Escherichia coli [TaxId: 562]
Score = 113 bits (284), Expect = 3e-27
Identities = 47/449 (10%), Positives = 111/449 (24%), Gaps = 57/449 (12%)
Query: 247 KLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTH--------KP 298
K T + + S L + +I+ + + M + + +
Sbjct: 16 KRTTRAYREEAIIKSGMNPFLLDSEDVFIDLLTDSGTGAVTQSMQAAMMRGDEAFSGSRS 75
Query: 299 VIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHG 358
L+E + ++ Y+ + G A ++ + + + L++ K + N +
Sbjct: 76 YYALAESVKNIFGYQ--YTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFD 133
Query: 359 ETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKN 418
T G + + + G + + LE +++
Sbjct: 134 TTQGHSQINGCT--------------VRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEV 179
Query: 419 HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADE------IAVGCGRTG 472
I+ + + G LK + I Y+I ++ D R
Sbjct: 180 GPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREA 239
Query: 473 KFFACEHAEIWPDF--------LCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLH 524
++ +I + + K L + + +
Sbjct: 240 EYKDWTIEQITRETYKYADMLAMSAKKDAMVPMGGLLCMKDDSFFDVYTECRTLCVVQEG 299
Query: 525 SHSYSGNPLACCAALAT-LEIFNKDNILQRISQDMKKITKALTSLI-------THPKIIN 576
+Y G LA L + L ++ + L + H ++
Sbjct: 300 FPTYGGLEGGAMERLAVGLYDGMNLDWLAYRIAQVQYLVDGLEEIGVVCQQAGGHAAFVD 359
Query: 577 FRQKGMIWAFDVIIEDPEQIETF----------SKKFFVAALKNELLLRPIGNTVYL-MP 625
+ D E + K L + L +P
Sbjct: 360 AGKLLPHIPADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIP 419
Query: 626 PYILNKNEIQHMTSAIFQTFNELDEVINL 654
+ + + A + L
Sbjct: 420 RATYTQTHMDFIIEAFKHVKENAANIKGL 448
|
| >d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} Length = 465 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Proteus vulgaris [TaxId: 585]
Score = 102 bits (255), Expect = 2e-23
Identities = 57/448 (12%), Positives = 112/448 (25%), Gaps = 58/448 (12%)
Query: 247 KLITFSGKRYLDAISSWWVNLFGHSNSYI--------NKALKNQLNKLEHVMLSNLTHKP 298
++ + + + + L S YI N +Q + + +
Sbjct: 17 RVPSREEREAALKEAGYNPFLLPSSAVYIDLLTDSGTNAMSDHQWAAMITGDEAYAGSRN 76
Query: 299 VIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHG 358
L +K L Y + G A + + Y +G FI +++H
Sbjct: 77 YYDLKDKAKELFNYD--YIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFI---SNFHF 131
Query: 359 ETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKN 418
+T A N I T + I L+ + ++
Sbjct: 132 DTTAAHVELNGCKAINIVTEKAFDSETYDDWK-------------GDFDIKKLKENIAQH 178
Query: 419 HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADE------IAVGCGRTG 472
I+ + + G LK V EI + I ++ D R
Sbjct: 179 GADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDP 238
Query: 473 KFFACEHAEIWP------DFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSH 526
K+ E+ D L +S LV D +
Sbjct: 239 KYKNATIKEVIFDMYKYADALTMSAKKDPLLNIGGLVAIRDNEEIFTLARQRCVPMEGFV 298
Query: 527 SYSGNPLACCAAL--ATLEIFNKDNILQRISQD-------MKKITKALTSLITH------ 571
+Y G AA+ E ++ + RI Q + H
Sbjct: 299 TYGGLAGRDMAAMVQGLEEGTEEEYLHYRIGQVKYLGDRLREAGIPIQYPTGGHAVFVDC 358
Query: 572 ----PKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIGNTVYL-MPP 626
P+I + + +E + + L +
Sbjct: 359 KKLVPQIPGDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIAR 418
Query: 627 YILNKNEIQHMTSAIFQTFNELDEVINL 654
+ + + ++ A+ + + L
Sbjct: 419 RVYTNDHMDYIADALIGLKEKFATLKGL 446
|
| >d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} Length = 456 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tyrosine phenol-lyase species: Erwinia herbicola [TaxId: 549]
Score = 50.9 bits (121), Expect = 5e-07
Identities = 48/355 (13%), Positives = 91/355 (25%), Gaps = 53/355 (14%)
Query: 299 VIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHG 358
L + + L +K H G A + G +H
Sbjct: 77 FYHLEKTVKELFGFK--HIVPTHQGRGAENLL----SQLAIKPGQYVAGNMYFTTTRFHQ 130
Query: 359 ETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKN 418
E GA V + + P +I+ + L L+K+
Sbjct: 131 EKNGATFVDIV--------RDEAHDASLNLPFKGDID------------LNKLATLIKEK 170
Query: 419 HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIAD-----EIAVGCGRTGK 473
+ A I + G ++ V E+ + Y I + D E A
Sbjct: 171 GAENIAYICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIFYDATRCVENAYFIKEQEA 230
Query: 474 FFA-----------CEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIF 522
+ +A+ + K L M ++++++ +
Sbjct: 231 GYENVSIKDIVHEMFSYADGC--TMSGKKDCLVNIGGF-LCMNDEEMFSAAKELVVVYEG 287
Query: 523 LHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKAL-TSLITHPKIINFRQKG 581
+ S+ A+ E + I R+ Q + L L I G
Sbjct: 288 MPSYGGLAGRDMEAMAIGLREAMQYEYIEHRVKQV-----RYLGDKLREAGVPIVEPTGG 342
Query: 582 MIWAFDVIIEDPE-QIETFSKKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQ 635
D P + F + A++ E +R + + E
Sbjct: 343 HAVFLDARRFCPHLTQDQFPAQSLAASIYMETGVRSMERG-IVSAGRSKETGENH 396
|
| >d1vioa1 d.265.1.3 (A:58-231) Ribosomal small subunit pseudouridine 516 synthase RsuA {Haemophilus influenzae [TaxId: 727]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Pseudouridine synthase superfamily: Pseudouridine synthase family: Pseudouridine synthase RsuA/RluD domain: Ribosomal small subunit pseudouridine 516 synthase RsuA species: Haemophilus influenzae [TaxId: 727]
Score = 38.3 bits (88), Expect = 0.001
Identities = 31/217 (14%), Positives = 67/217 (30%), Gaps = 44/217 (20%)
Query: 34 EDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVV 93
E+ + +LNK G V G+ T++ + RLD +++GL+++
Sbjct: 1 EEGQYFMLNKPQGCVCSNDDGDYP-TIYQFFDYPLA-----GKLHSAGRLDVDTTGLVLL 54
Query: 94 AKSIKSYIHLVNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTVSKNFNAK 153
+ + + + + N + +
Sbjct: 55 TDDGQWSHRITSPKHHCEKTYLV------------TLADPVEENYSAACAEGILLRGEKE 102
Query: 154 PALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWLGHGIVGDNLYGKKYSKSLI 213
P + + + GR HQ++ LG+ +V
Sbjct: 103 PTKPAK-------LEILDDYNVNLTISEGRYHQVKRMFAALGNKVV-------------- 141
Query: 214 FNRQALHAYKLGLIHPKNNLKL-KWRINLPDDISKLI 249
LH +K+G + +L+ ++R +I KL+
Sbjct: 142 ----GLHRWKIGDVVLDESLEEGEYRPLTQSEIEKLV 174
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 965 | |||
| d1s0aa_ | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 100.0 | |
| d1sffa_ | 425 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 100.0 | |
| d1zoda1 | 431 | Dialkylglycine decarboxylase {Pseudomonas cepacia | 100.0 | |
| d2byla1 | 404 | Ornithine aminotransferase {Human (Homo sapiens) [ | 100.0 | |
| d1vefa1 | 387 | Acetylornithine/acetyl-lysine aminotransferase Arg | 100.0 | |
| d1z7da1 | 404 | Ornithine aminotransferase {Plasmodium yoelii yoel | 100.0 | |
| d1ohwa_ | 461 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 100.0 | |
| d2gsaa_ | 427 | Glutamate-1-semialdehyde aminomutase (aminotransfe | 100.0 | |
| d1r30a_ | 312 | Biotin synthase {Escherichia coli [TaxId: 562]} | 100.0 | |
| d1v9fa_ | 250 | Ribosomal large subunit pseudouridine synthase D, | 100.0 | |
| d1v9ka_ | 227 | Ribosomal large subunit pseudouridine synthase C, | 100.0 | |
| d1fc4a_ | 401 | 2-amino-3-ketobutyrate CoA ligase {Escherichia col | 99.97 | |
| d1bs0a_ | 383 | PLP-dependent acyl-CoA synthase (8-amino-7-oxonano | 99.96 | |
| d2bwna1 | 396 | 5-aminolevulinate synthase {Rhodobacter capsulatus | 99.93 | |
| d1vioa1 | 174 | Ribosomal small subunit pseudouridine 516 synthase | 99.92 | |
| d1b5pa_ | 382 | Aspartate aminotransferase, AAT {Thermus thermophi | 99.89 | |
| d1kska4 | 172 | Ribosomal small subunit pseudouridine 516 synthase | 99.88 | |
| d1ax4a_ | 465 | Tryptophan indol-lyase (tryptophanase) {Proteus vu | 99.88 | |
| d1j32a_ | 388 | Aspartate aminotransferase, AAT {Phormidium lapide | 99.87 | |
| d1lc5a_ | 355 | L-threonine-O-3-phosphate decarboxylase CobD {Salm | 99.86 | |
| d1gdea_ | 388 | Aromatic aminoacid aminotransferase, AroAT {Archae | 99.85 | |
| d1m6sa_ | 343 | Low-specificity threonine aldolase {Thermotoga mar | 99.84 | |
| d1xi9a_ | 395 | Putative alanine aminotransferase {Pyrococcus furi | 99.84 | |
| d1v72a1 | 345 | Phenylserine aldolase PSALD {Pseudomonas putida [T | 99.84 | |
| d1v2da_ | 368 | Glutamine aminotransferase {Thermus thermophilus [ | 99.82 | |
| d1o4sa_ | 375 | Aspartate aminotransferase, AAT {Thermotoga mariti | 99.82 | |
| d1bw0a_ | 412 | Tyrosine aminotransferase (TAT) {Trypanosoma cruzi | 99.82 | |
| d2v1pa1 | 467 | Tryptophan indol-lyase (tryptophanase) {Escherichi | 99.82 | |
| d2r5ea1 | 418 | Kynurenine--oxoglutarate transaminase I {Yellowfev | 99.82 | |
| d1c7na_ | 394 | Cystalysin {Treponema denticola [TaxId: 158]} | 99.81 | |
| d1w7la_ | 418 | Kynurenine--oxoglutarate transaminase I {Human (Ho | 99.81 | |
| d1vp4a_ | 420 | Putative aminotransferase TM1131 {Thermotoga marit | 99.81 | |
| d1wsta1 | 403 | Multiple substrate aminotransferase, MSAT {Thermoc | 99.8 | |
| d2gb3a1 | 389 | AAT homologue TM1698 {Thermotoga maritima [TaxId: | 99.79 | |
| d2f8ja1 | 334 | Histidinol-phosphate aminotransferase HisC {Thermo | 99.79 | |
| d1d2fa_ | 361 | Modulator in mal gene expression, MalY {Escherichi | 99.79 | |
| d1elua_ | 381 | Cystine C-S lyase C-des {Synechocystis sp. [TaxId: | 99.79 | |
| d1u08a_ | 382 | Putative methionine aminotransferase YdbL {Escheri | 99.78 | |
| d1fg7a_ | 354 | Histidinol-phosphate aminotransferase HisC {Escher | 99.75 | |
| d1iaya_ | 428 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 99.73 | |
| d1m7ya_ | 431 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 99.73 | |
| d1svva_ | 340 | Low-specificity threonine aldolase {Leishmania maj | 99.69 | |
| d1olta_ | 441 | Oxygen-independent coproporphyrinogen III oxidase | 99.68 | |
| d1p3wa_ | 391 | Cysteine desulfurase IscS {Escherichia coli [TaxId | 99.67 | |
| d2e7ja1 | 364 | Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl | 99.66 | |
| d1jf9a_ | 405 | NifS-like protein/selenocysteine lyase {Escherichi | 99.65 | |
| d2q7wa1 | 396 | Aspartate aminotransferase, AAT {Escherichia coli | 99.64 | |
| d1t3ia_ | 408 | Probable cysteine desulfurase SufS {Synechocystis | 99.64 | |
| d7aata_ | 401 | Aspartate aminotransferase, AAT {Chicken (Gallus g | 99.64 | |
| d1ajsa_ | 412 | Aspartate aminotransferase, AAT {Pig (Sus scrofa), | 99.62 | |
| d1yaaa_ | 412 | Aspartate aminotransferase, AAT {Baker's yeast (Sa | 99.61 | |
| d1c7ga_ | 456 | Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5 | 99.6 | |
| d1qz9a_ | 404 | Kynureninase {Pseudomonas fluorescens [TaxId: 294] | 99.57 | |
| d2ay1a_ | 394 | Aromatic aminoacid aminotransferase, AroAT {Paraco | 99.57 | |
| d3tata_ | 397 | Aromatic aminoacid aminotransferase, AroAT {Escher | 99.56 | |
| d2aeua1 | 366 | Hypothetical protein MJ0158 {Archaeon Methanococcu | 99.54 | |
| d1m32a_ | 361 | 2-aminoethylphosphonate transaminase {Salmonella t | 99.5 | |
| d1eg5a_ | 376 | NifS-like protein/selenocysteine lyase {Thermotoga | 99.5 | |
| d1h0ca_ | 388 | Alanine-glyoxylate aminotransferase {Human (Homo s | 99.48 | |
| d2hoxa1 | 425 | Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | 99.47 | |
| d2z67a1 | 434 | Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco | 99.45 | |
| d3bc8a1 | 445 | Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu | 99.38 | |
| d1tv8a_ | 327 | Molybdenum cofactor biosynthesis protein A MoaA {S | 99.35 | |
| d2bkwa1 | 382 | Alanine-glyoxylate aminotransferase {Baker's yeast | 99.34 | |
| d1vjoa_ | 377 | Alanine-glyoxylate aminotransferase {Cyanobacteria | 99.33 | |
| d1pmma_ | 450 | Glutamate decarboxylase beta, GadB {Escherichia co | 99.27 | |
| d1mdoa_ | 376 | Aminotransferase ArnB {Salmonella typhimurium [Tax | 99.27 | |
| d2ch1a1 | 388 | 3-hydroxykynurenine transaminase {Malaria mosquito | 99.23 | |
| d1gc0a_ | 392 | Methionine gamma-lyase, MGL {Pseudomonas putida [T | 99.22 | |
| d1y4ia1 | 397 | Methionine gamma-lyase, MGL {Citrobacter freundii | 99.2 | |
| d1qgna_ | 398 | Cystathionine gamma-synthase, CGS {Common tobacco | 99.2 | |
| d1c4ka2 | 462 | Ornithine decarboxylase major domain {Lactobacillu | 99.19 | |
| d1js3a_ | 476 | DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823] | 99.14 | |
| d1ibja_ | 380 | Cystathionine beta-lyase, CBL {Thale cress (Arabid | 99.12 | |
| d1cs1a_ | 384 | Cystathionine gamma-synthase, CGS {Escherichia col | 99.08 | |
| d1b9ha_ | 384 | 3-amino-5-hydroxybenzoic acid synthase (AHBA synth | 99.08 | |
| d1iuga_ | 348 | Subgroup IV putative aspartate aminotransferase {T | 99.07 | |
| d1o69a_ | 374 | Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam | 98.96 | |
| d1pffa_ | 331 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 98.96 | |
| d1cl1a_ | 391 | Cystathionine beta-lyase, CBL {Escherichia coli [T | 98.95 | |
| d1e5ea_ | 394 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 98.91 | |
| d1n8pa_ | 393 | Cystathionine gamma-lyase (CYS3) {Baker's yeast (S | 98.9 | |
| d2fnua1 | 371 | Spore coat polysaccharide biosynthesis protein C { | 98.88 | |
| d2c0ra1 | 361 | Phosphoserine aminotransferase, PSAT {Bacillus cir | 98.87 | |
| d2ctza1 | 421 | O-acetyl-L-homoserine sulfhydrylase {Thermus therm | 98.85 | |
| d1w23a_ | 360 | Phosphoserine aminotransferase, PSAT {Bacillus alc | 98.67 | |
| d1kl1a_ | 405 | Serine hydroxymethyltransferase {Bacillus stearoth | 98.63 | |
| d1wyub1 | 471 | Glycine dehydrogenase subunit 2 (P-protein) {Therm | 98.63 | |
| d1dfoa_ | 416 | Serine hydroxymethyltransferase {Escherichia coli | 98.59 | |
| d1bjna_ | 360 | Phosphoserine aminotransferase, PSAT {Escherichia | 98.46 | |
| d1wyua1 | 437 | Glycine dehydrogenase (decarboxylating) subunit 1 | 98.45 | |
| d1rv3a_ | 470 | Serine hydroxymethyltransferase {Rabbit (Oryctolag | 98.11 | |
| d2a7va1 | 463 | Serine hydroxymethyltransferase {Human (Homo sapie | 97.99 | |
| d1nvma2 | 289 | 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic d | 97.3 | |
| d1k8wa5 | 242 | Pseudouridine synthase II TruB {Escherichia coli [ | 97.0 | |
| d2ey4a2 | 245 | Pseudouridine synthase II TruB {Archaeon Pyrococcu | 96.9 | |
| d1r3ea2 | 228 | Pseudouridine synthase II TruB {Thermotoga maritim | 96.83 | |
| d1sgva2 | 233 | Pseudouridine synthase II TruB {Mycobacterium tube | 96.7 | |
| d2apoa2 | 230 | Pseudouridine synthase II TruB {Archaeon Methanoco | 96.68 | |
| d1rpxa_ | 230 | D-ribulose-5-phosphate 3-epimerase {Potato (Solanu | 96.15 | |
| d2flia1 | 217 | D-ribulose-5-phosphate 3-epimerase {Streptococcus | 95.96 | |
| d1h1ya_ | 220 | D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sa | 95.65 | |
| d1tqja_ | 221 | D-ribulose-5-phosphate 3-epimerase {Synechocystis | 95.56 | |
| d1jvna1 | 323 | Cyclase subunit (or domain) of imidazoleglycerolph | 95.47 | |
| d1rqba2 | 303 | Transcarboxylase 5S subunit, N-terminal domain {Pr | 95.05 | |
| d1thfd_ | 253 | Cyclase subunit (or domain) of imidazoleglycerolph | 94.29 | |
| d1tqxa_ | 221 | D-ribulose-5-phosphate 3-epimerase {Plasmodium fal | 93.79 | |
| d1ad1a_ | 264 | Dihydropteroate synthetase {Staphylococcus aureus | 93.35 | |
| d1h5ya_ | 252 | Cyclase subunit (or domain) of imidazoleglycerolph | 93.34 | |
| d1ka9f_ | 251 | Cyclase subunit (or domain) of imidazoleglycerolph | 93.19 | |
| d1gtea2 | 312 | Dihydropyrimidine dehydrogenase, domain 4 {Pig (Su | 91.69 | |
| d1eyea_ | 270 | Dihydropteroate synthetase {Mycobacterium tubercul | 91.32 | |
| d1x7fa2 | 244 | Outer surface protein, N-terminal domain {Bacillus | 90.99 | |
| d1tx2a_ | 273 | Dihydropteroate synthetase {Bacillus anthracis [Ta | 89.43 | |
| d1vhca_ | 212 | Hypothetical protein HI0047 {Haemophilus influenza | 89.17 | |
| d1n7ka_ | 234 | Deoxyribose-phosphate aldolase DeoC {Archaeon Aero | 88.84 | |
| d1vc4a_ | 254 | Indole-3-glycerophosphate synthase, IPGS {Thermus | 88.6 | |
| d1qopa_ | 267 | Trp synthase alpha-subunit {Salmonella typhimurium | 87.13 | |
| d1wbha1 | 213 | KDPG aldolase {Escherichia coli [TaxId: 562]} | 86.74 | |
| d1ub3a_ | 211 | Deoxyribose-phosphate aldolase DeoC {Thermus therm | 86.68 | |
| d1ajza_ | 282 | Dihydropteroate synthetase {Escherichia coli [TaxI | 86.34 | |
| d1a53a_ | 247 | Indole-3-glycerophosphate synthase, IPGS {Archaeon | 85.91 | |
| d1rd5a_ | 261 | Trp synthase alpha-subunit {Maize (Zea mays) [TaxI | 85.13 | |
| d1w0ma_ | 226 | Triosephosphate isomerase {Thermoproteus tenax [Ta | 84.25 | |
| d2zdra2 | 280 | Capsule biosynthesis protein SiaC, N-terminal doma | 84.2 | |
| d1kcza1 | 253 | beta-Methylaspartase {Clostridium tetanomorphum [T | 83.92 | |
| d1vr6a1 | 338 | 3-deoxy-D-arabino-heptulosonate-7-phosphate syntha | 82.87 | |
| d3bofa1 | 260 | Cobalamin-dependent methionine synthase MetH, C-te | 82.74 | |
| d1o0ya_ | 251 | Deoxyribose-phosphate aldolase DeoC {Thermotoga ma | 81.94 | |
| d1m5wa_ | 242 | Pyridoxine 5'-phosphate synthase {Escherichia coli | 81.8 | |
| d1mxsa_ | 216 | KDPG aldolase {Pseudomonas putida [TaxId: 303]} | 81.55 | |
| d1xi3a_ | 206 | Thiamin phosphate synthase {Archaeon (Pyrococcus f | 80.05 |
| >d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=6.5e-66 Score=583.03 Aligned_cols=409 Identities=35% Similarity=0.631 Sum_probs=352.9
Q ss_pred ccccccccccCcccccccccCCC-ce-----eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCC
Q psy8199 221 AYKLGLIHPKNNLKLKWRINLPD-DI-----SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNL 294 (965)
Q Consensus 221 a~~l~f~~p~~~~~~~~~~~~p~-~~-----~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~ 294 (965)
..+-++|||++....+ .|+ ++ +||||.|||+|||+.+|+|+++|||+||+|++|+++|++++.+.....+
T Consensus 8 ~d~~h~~~p~~~~~~~----~p~~~i~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~~~~~~ 83 (429)
T d1s0aa_ 8 FDQRHILHPFTSMTSP----LPVYPVVSAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGI 83 (429)
T ss_dssp HHHHHBCCTTCCSSSC----CCCEEEEEEEBTEEEETTSCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHHCSCCCCSSE
T ss_pred HHHHhcCCCcccCCCC----CCCcceEEeECCEEEECCCCEEEECcccHHHHhhcCCcHHHHHHHHHHHHhcCCcccCCc
Confidence 3344689999877654 455 34 9999999999999999999999999999999999999999887776778
Q ss_pred CcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccc
Q psy8199 295 THKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKE 374 (965)
Q Consensus 295 ~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~ 374 (965)
+++...++++++.+..|.+.++|+|++|||||++.|+|++|+++..+|. ++.+||+++++|||.|.+++++++...+..
T Consensus 84 ~~~~~~~l~~~l~~~~~~~~~~v~f~~sGseA~e~A~k~ar~~~~~~g~-~~~~ii~~~~~yHG~t~~a~~~t~~~~~~~ 162 (429)
T d1s0aa_ 84 THAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGE-ARQRFLTFRNGYHGDTFGAMSVCDPDNSMH 162 (429)
T ss_dssp ECHHHHHHHHHHHHHSCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHTC-CCCEEEEETTCCCCSSHHHHTTSCTTTTTG
T ss_pred cchHHHHHHHHHHhhhccCcceeeeccccccchhhhhhhhhheeecccc-cccEEEEecCCccccchhhhhhcCCccccc
Confidence 8999999999999999988999999999999999999999999988884 567899999999999999999998765554
Q ss_pred hhcc-cCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHH
Q psy8199 375 IYTS-LLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICN 453 (965)
Q Consensus 375 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~ 453 (965)
.+.+ ........|.+...... .....+++++++.+.+.+++++|||+||+.++.+|.++||++|+++|+++|+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~iaavivEPi~~~~gg~~~~~~~fl~~lr~lc~ 236 (429)
T d1s0aa_ 163 SLWKGYLPENLFAPAPQSRMDG------EWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICD 236 (429)
T ss_dssp GGGTTTSCCCEEECCCCSBC-C------CCCGGGGHHHHHHHHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHH
T ss_pred cccCcccccccccccccccccc------ccchhhhhhhhhhhhhcCCccceeeecceeccCCCccCCCHHHHHHHHHHHH
Confidence 4333 33344444443322111 1122466777777777788999999999334778888999999999999999
Q ss_pred hcCCeEEEeccccCCCcccccccccccCCCcceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHH
Q psy8199 454 NYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPL 533 (965)
Q Consensus 454 ~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~ 533 (965)
+||+++|+|||+|||||+|++|+++++|+.||++|+||+|+|||+|+|++++++++++.+.. +....+.|++||++||+
T Consensus 237 ~~gillI~DEV~tGfGRtG~~~~~~~~~v~PDi~~~gK~l~gG~~p~~av~~~~~i~~~~~~-~~~~~~~~~~T~~gnp~ 315 (429)
T d1s0aa_ 237 REGILLIADEIATGFGRTGKLFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISN-GEAGCFMHGPTFMGNPL 315 (429)
T ss_dssp HHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTSSSCCEEEEECHHHHHHHHT-STTSSCSCCCTTTTCHH
T ss_pred HcCcceehhhccccccccccccccccceecccccccccccccccccccchhhHHHHHhccCC-CCCcceeecCCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999998865 23456889999999999
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcE
Q psy8199 534 ACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELL 613 (965)
Q Consensus 534 ~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~ 613 (965)
+|+||+++|++++++++.+++++.+++|+++|+++.+.+.+.+|||.|+|+++++. .. .....+...|+++|++
T Consensus 316 ~~aaa~a~L~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~~v~~vrg~Gl~~~~e~~-~~-----~~~~~~~~~~~~~Gl~ 389 (429)
T d1s0aa_ 316 ACAAANASLAILESGDWQQQVADIEVQLREQLAPARDAEMVADVRVLGAIGVVETT-HP-----VNMAALQKFFVEQGVW 389 (429)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHGGGGGCTTEEEEEEETTEEEEEES-SC-----BCHHHHHHHHHHTTEE
T ss_pred cchhhhccccccccccccchhhHHHHHHHHHHHHhccCCceEEEeecccEEEEEec-Cc-----ccHHHHHHHHHHCCcE
Confidence 99999999999999999999999999999999999888899999999999999986 22 1134688899999999
Q ss_pred EeecCCEEEEeCCcccCHHHHHHHHHhhhccccc
Q psy8199 614 LRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNE 647 (965)
Q Consensus 614 ~~~~~~~lR~~p~~~~t~~~i~~~~~~l~~~~~~ 647 (965)
+.+.++++||+||+++|+++|+++++++++++.+
T Consensus 390 ~~~~g~~i~~~Ppl~it~~eid~~~~~l~~al~e 423 (429)
T d1s0aa_ 390 IRPFGKLIYLMPPYIILPQQLQRLTAAVNRAVQD 423 (429)
T ss_dssp CCCBTTEEEECCCTTCCHHHHHHHHHHHHHHTSS
T ss_pred EEecCCEEEEeCCcCCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999877654
|
| >d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.4e-63 Score=564.40 Aligned_cols=382 Identities=28% Similarity=0.418 Sum_probs=324.1
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCC-CCeEEEcCChh
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYK-LGHCFYGSDGA 324 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~-~~~v~~~~sGs 324 (965)
+||||.|||+|||+.+|+|+++|||+||+|++|+++|++++.+.+...+.++...+++++|.+.+|.+ .++|+|++|||
T Consensus 32 ~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~~v~f~~sGs 111 (425)
T d1sffa_ 32 CRVWDVEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGS 111 (425)
T ss_dssp TEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHTTTCSCCCTTTEECHHHHHHHHHHHHHSSCSSCEEEEEESSHH
T ss_pred CEEEeCCCCEEEEcCcCHHhhcccCCcHHHHHHHHHHHhhcCCcccccccCcHHHHHHHHHHhhhhhcccceeeeecccc
Confidence 99999999999999999999999999999999999999998777666788999999999999999854 57999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCee-EecCCCCCCCCCCCChhHH
Q psy8199 325 SAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTY-IITTPDSRNINKGNSANEI 403 (965)
Q Consensus 325 eA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 403 (965)
||++.|+|+||.| ++|.+||+++++|||++.+++++++.......+.+..+... ..+.|..... ... ..
T Consensus 112 eA~e~Alk~ar~~------t~r~~ii~~~~~yHG~t~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~ 181 (425)
T d1sffa_ 112 EAVENAVKIARAA------TKRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHG---ISE-DD 181 (425)
T ss_dssp HHHHHHHHHHHHH------HTCCEEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGT---BCH-HH
T ss_pred chhhhHHHHhhhh------hcccceEeecCCCcCccccchhhcCCCCcccCCcccccCCccccCCcccccc---ccc-hh
Confidence 9999999999999 48999999999999999999999986655554444443332 3333321110 111 11
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCC
Q psy8199 404 ARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIW 483 (965)
Q Consensus 404 ~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~ 483 (965)
...+.+++.. .....++++|||+|| +++++|+++|+++||+.|+++|++||++||+|||+|||||+|.+|+++++|+.
T Consensus 182 ~~~~~~~~~~-~~~~~~~vaavi~EP-i~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gR~g~~~a~~~~gv~ 259 (425)
T d1sffa_ 182 AIASIHRIFK-NDAAPEDIAAIVIEP-VQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGVA 259 (425)
T ss_dssp HHHHHHHHHH-HTCCGGGEEEEEECS-BCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTSC
T ss_pred hHHHHHHHHH-hcccccceEEEEecC-ccCCCCcccCCHHHHHHHHHHHHHcCceEEeccccccCCCcchhhHHHhcCCC
Confidence 1112222211 223356899999999 99999999999999999999999999999999999999999999999999999
Q ss_pred cceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Q psy8199 484 PDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITK 563 (965)
Q Consensus 484 pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~ 563 (965)
||++|+||+|+|| +|+|++++++++++.+.. ..|++||++||++|+||+++|++++++++.++++.+++++++
T Consensus 260 PDi~~~gK~l~gG-~P~~av~~~~~i~~~~~~------~~~~~T~~gnpl~~aaa~a~L~~i~~~~~~~~~~~~g~~l~~ 332 (425)
T d1sffa_ 260 PDLTTFAKSIAGG-FPLAGVTGRAEVMDAVAP------GGLGGTYAGNPIACVAALEVLKVFEQENLLQKANDLGQKLKD 332 (425)
T ss_dssp CSEEEECGGGGTS-SCCEEEEEEHHHHTTSCT------TSBCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred ccceecccccCCC-cceEEEEEcHHHHHhhCC------CCCCCCCCcCHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhh
Confidence 9999999999999 599999999999998865 358999999999999999999999999999999999999999
Q ss_pred HHHcc-cCCCceeeeeceeEEEEEEEeecCc---cchhhHHHHHHHHHHHcCcEEeecC---CEEEEeCCcccCHHHHHH
Q psy8199 564 ALTSL-ITHPKIINFRQKGMIWAFDVIIEDP---EQIETFSKKFFVAALKNELLLRPIG---NTVYLMPPYILNKNEIQH 636 (965)
Q Consensus 564 ~L~~l-~~~~~i~~v~g~G~~~~i~~~~~~~---~~~~~~~~~~~~~l~~~Gi~~~~~~---~~lR~~p~~~~t~~~i~~ 636 (965)
+|+++ .+++.+..++|.|+|+++++. .+. .........+.+.|+++|+++.+.+ +++||+||+++++++|++
T Consensus 333 ~l~~~~~~~~~v~~vrg~Gl~~~i~f~-~~~~~~~~~~~~~~~~~~~l~~~Gvl~~~~g~~~n~i~~~PpL~it~~eid~ 411 (425)
T d1sffa_ 333 GLLAIAEKHPEIGDVRGLGAMIAIELF-EDGDHNKPDAKLTAEIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQ 411 (425)
T ss_dssp HHHHHHHTCTTEEEEEEETTEEEEEEB-GGGCTTSBCHHHHHHHHHHHHHTTEECEEESTTSCEEEECCCTTCCHHHHHH
T ss_pred hhhhhHhhCCceEEEEccccEEEEEEe-ccCccCCccHHHHHHHHHHHHHCCCEEeccCCCCCEEEEECCCCCCHHHHHH
Confidence 99887 778889999999999999996 221 1223456678899999999988753 799999999999999999
Q ss_pred HHHhhhccccc
Q psy8199 637 MTSAIFQTFNE 647 (965)
Q Consensus 637 ~~~~l~~~~~~ 647 (965)
+++++++++.+
T Consensus 412 ~l~~l~~al~e 422 (425)
T d1sffa_ 412 GLEIISQCFDE 422 (425)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998876544
|
| >d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Dialkylglycine decarboxylase species: Pseudomonas cepacia [TaxId: 292]
Probab=100.00 E-value=2e-63 Score=566.66 Aligned_cols=392 Identities=23% Similarity=0.360 Sum_probs=336.5
Q ss_pred CCCce-----eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCC
Q psy8199 241 LPDDI-----SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLG 315 (965)
Q Consensus 241 ~p~~~-----~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~ 315 (965)
.|+++ +||||.|||+|||+.+|+|+++|||+||+|.+|+++|++++.+.+ ..+++++..+++++|++.++.+++
T Consensus 23 ~P~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~-~~~~~~~~~~la~~L~~~~~~~~~ 101 (431)
T d1zoda1 23 EPMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHLF-SEMLSRPVVDLATRLANITPPGLD 101 (431)
T ss_dssp CSSCCCEEEBTEEECTTCCEEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCCCCC-TTCCCHHHHHHHHHHHHHSCTTCC
T ss_pred CCCeEEEeecCEEEECCCCEEEEcccCHHhhhhcCCCHHHHHHHHHHHhhccccc-cccccHHHHHHHHHHHHhCCcccc
Confidence 36555 999999999999999999999999999999999999999987653 567899999999999999987899
Q ss_pred eEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCC
Q psy8199 316 HCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNIN 395 (965)
Q Consensus 316 ~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (965)
+|+|++|||||+|.|+|+||.+ ++|.+|+.++++|||++.+++++++... +..+.+...+...++.+......
T Consensus 102 ~v~f~~sGseA~e~Alk~Ar~~------t~r~~i~~~~~~yHG~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 174 (431)
T d1zoda1 102 RALLLSTGAESNEAAIRMAKLV------TGKYEIVGFAQSWHGMTGAAASATYSAG-RKGVGPAAVGSFAIPAPFTYRPR 174 (431)
T ss_dssp EEEEESCHHHHHHHHHHHHHHH------HTCCEEEEETTCCCCSSHHHHHTCCSSC-CSSSCCCCTTEEEECCCCTTSCC
T ss_pred eeeecccccchHHHHHHHHHHh------cCCcceeecccccccccchhhccccccc-ccccCCcccCceeeeeecccccc
Confidence 9999999999999999999999 5899999999999999999999988654 44556666677777776554444
Q ss_pred CCCChhHHHHHHHHHHHHHHHh-CCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccccc
Q psy8199 396 KGNSANEIARCAIFDLEILLKK-NHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKF 474 (965)
Q Consensus 396 ~~~~~~~~~~~d~~~le~~l~~-~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~ 474 (965)
...........+++.++..+.+ .++++||||+|| +++++|.++||++|+++|+++|++||++||+|||+|||||+|.+
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavi~EP-i~g~~G~~~~~~~yl~~lr~lc~~~gillI~DEV~tG~gRtG~~ 253 (431)
T d1zoda1 175 FERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEP-ILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTM 253 (431)
T ss_dssp CEETTEECHHHHHHHHHHHHHHHCCSCEEEEEECS-EETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSS
T ss_pred cccccchhhhhhHHHHHHHHHHhccccccceeecc-ccccCCccCCCHHHHHHHHHHHHhcCceEEeccccccccccccc
Confidence 3333333444566666655543 367899999999 99999999999999999999999999999999999999999999
Q ss_pred ccccccCCCcceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHH
Q psy8199 475 FACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRI 554 (965)
Q Consensus 475 ~~~~~~~~~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~ 554 (965)
|+++++|+.||++|+||+|+|| +|++++++++++++.+.. ..+.|++||++||++|+|++++|++++++++.+++
T Consensus 254 ~~~~~~gv~PDi~~~gK~l~gG-~p~~av~~~~~~~~~~~~----~~~~~~~T~~g~pl~~aaa~a~l~~i~~~~~~~~~ 328 (431)
T d1zoda1 254 FACQRDGVTPDILTLSKTLGAG-LPLAAIVTSAAIEERAHE----LGYLFYTTHVSDPLPAAVGLRVLDVVQRDGLVARA 328 (431)
T ss_dssp STHHHHTCCCSEEEECHHHHTT-SSCEEEEECHHHHHHHHH----TTCCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred cccccCCCCcchhccccccccc-cccceeeeeecchhhhhc----ccccccCCCCCCcchHHHHHHHHHHhhhhhhhHHH
Confidence 9999999999999999999999 599999999999887754 23568999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcc-cCCCceeeeeceeEEEEEEEeecC--ccchhhHHHHHHHHHHHcCcEEe-----ecCCEEEEeCC
Q psy8199 555 SQDMKKITKALTSL-ITHPKIINFRQKGMIWAFDVIIED--PEQIETFSKKFFVAALKNELLLR-----PIGNTVYLMPP 626 (965)
Q Consensus 555 ~~~~~~l~~~L~~l-~~~~~i~~v~g~G~~~~i~~~~~~--~~~~~~~~~~~~~~l~~~Gi~~~-----~~~~~lR~~p~ 626 (965)
.++++++.+.+.++ .+++.+.+|+|.|+|+++++.... ..........+.+.|+++|++.. +.++++||+||
T Consensus 329 ~~~g~~l~~~l~~~~~~~~~i~~vrG~Glm~~ie~~~~~~~~~~~~~~~~~i~~~~~~~Gl~~~~~~~~~~~~~i~l~Pp 408 (431)
T d1zoda1 329 NVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVKDRRTKEPADGLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPP 408 (431)
T ss_dssp HHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEEEETTTTEECTTHHHHHHHHHHHTTEECCEECCTTSCCEEEECCC
T ss_pred HHHHHHHhhhhhhhhhcCCCeEEEeecceEEEEEEecCCcccCccHHHHHHHHHHHHHhCcccCeeeecCCCCEEEEECC
Confidence 99999999999887 778889999999999999986211 11223456678899999998643 24589999999
Q ss_pred cccCHHHHHHHHHhhhcccc
Q psy8199 627 YILNKNEIQHMTSAIFQTFN 646 (965)
Q Consensus 627 ~~~t~~~i~~~~~~l~~~~~ 646 (965)
+++|+++++++++++.+++.
T Consensus 409 l~it~~eid~~~~~l~~al~ 428 (431)
T d1zoda1 409 LTVSEDEIDLGLSLLGQAIE 428 (431)
T ss_dssp TTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999887654
|
| >d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2e-63 Score=558.83 Aligned_cols=367 Identities=27% Similarity=0.399 Sum_probs=328.6
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhH
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGAS 325 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGse 325 (965)
+||||.|||+||||.+++|+++|||+||+|++|+++|++++.+.+ ..+.+....++++.+++.. +.++++|++||||
T Consensus 33 ~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Av~~q~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~v~~~~sGse 109 (404)
T d2byla1 33 IYLWDVEGRKYFDFLSSISAVNQGHCHPKIVNALKSQVDKLTLTS-RAFYNNVLGEYEEYITKLF--NYHKVLPMNTGVE 109 (404)
T ss_dssp TEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCCCCC-TTEEESSHHHHHHHHHHHH--TCSEEEEESSHHH
T ss_pred CEEEECCCCEEEEecCCHHHHhhcCCCHHHHHHHHHHHhhCCCcc-cccccchHHHHHHhhhhcc--cccccccccCccc
Confidence 999999999999999999999999999999999999999976654 3456677778888888876 5789999999999
Q ss_pred HHHHHHHHHHHHHHhcC--CCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHH
Q psy8199 326 AVEVALKMSFHYWYNKG--FLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEI 403 (965)
Q Consensus 326 A~~~Al~~a~~~~~~~g--~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (965)
|++.|+|+||+++...+ .+++.+++.++++|||.+.++++.++.+.++..+.+..+++..+|.
T Consensus 110 A~e~Aik~ar~~~~~~~~~~~~~~~i~~~~~~~hg~t~~~~~~~~~~~~~~~~~p~~~~~~~~p~--------------- 174 (404)
T d2byla1 110 AGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPY--------------- 174 (404)
T ss_dssp HHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCCSHHHHTTCCCHHHHTTSCSCCTTEEEECT---------------
T ss_pred cchhHHHHHHHHhhhccccccccccccccCCCccccccceeccCCCcccccCCCCCCCCeeEecc---------------
Confidence 99999999999865443 3567889999999999999999999988888888888888888776
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCC
Q psy8199 404 ARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIW 483 (965)
Q Consensus 404 ~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~ 483 (965)
+|++++++++. .+++||||+|| +++++|.++|+++||++|+++|++||++||+|||+|||||+|++|+++++|+.
T Consensus 175 --~d~~~l~~~l~--~~~iAaviiEP-i~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~~~a~~~~gv~ 249 (404)
T d2byla1 175 --NDLPALERALQ--DPNVAAFMVEP-IQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVR 249 (404)
T ss_dssp --TCHHHHHHHHT--STTEEEEEECS-SBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCC
T ss_pred --cCHHHHHHhcC--CCCeEEEEECC-ccCCCCCccCCHHHHHHHHHHHHhcCeEEEeeccccccccccccchhhhcCCC
Confidence 47899999986 46899999999 99999999999999999999999999999999999999999999999999999
Q ss_pred cceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Q psy8199 484 PDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITK 563 (965)
Q Consensus 484 pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~ 563 (965)
||++||||+|+||++|+|++++++++++.+.. ..|++||+|||++|+||+++|++++++++.++++++++++++
T Consensus 250 PDi~~~gK~l~gG~~p~~av~~~~~i~~~~~~------~~~~~T~~gnpl~~aaa~a~L~~i~~~~l~~~~~~~g~~l~~ 323 (404)
T d2byla1 250 PDIVLLGKALSGGLYPVSAVLCDDDIMLTIKP------GEHFSTYGGNPLGCRVAIAALEVLEEENLAENADKLGIILRN 323 (404)
T ss_dssp CSEEEECGGGGTTSSCCEEEEECHHHHTTSCT------TSSCCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred CCEEEECchhhCCCccceeeeechhhhhccCC------CCCCcCCCcCHHHHHHHHHHHHHHHhcCchhhhhHhhHHHHH
Confidence 99999999999998999999999999988754 468999999999999999999999999999999999999999
Q ss_pred HHHcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec-CCEEEEeCCcccCHHHHHHHHHhhh
Q psy8199 564 ALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-GNTVYLMPPYILNKNEIQHMTSAIF 642 (965)
Q Consensus 564 ~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-~~~lR~~p~~~~t~~~i~~~~~~l~ 642 (965)
.|+++. .+.+.++||.|+|+++++.+.+ .....++..+|+++||++.+. ++++||+||+++|++++++++++++
T Consensus 324 ~l~~l~-~~~i~~vRg~Gl~~~i~~~~~~----~~~~~~~~~~l~~~Gvl~~~~~~~~i~l~PpL~it~~~id~~~~~l~ 398 (404)
T d2byla1 324 ELMKLP-SDVVTAVRGKGLLNAIVIKETK----DWDAWKVCLRLRDNGLLAKPTHGDIIRFAPPLVIKEDELRESIEIIN 398 (404)
T ss_dssp HHHTSC-TTTEEEEEEETTEEEEEECCCS----SCCHHHHHHHHHHTTEECEEEETTEEEECCCTTCCHHHHHHHHHHHH
T ss_pred HHHhhc-cccceeeeecccEEEEEEecCC----chhHHHHHHHHHhCCeEEecCCCCEEEEECCcCCCHHHHHHHHHHHH
Confidence 999983 4678899999999999986211 122446888999999999874 6899999999999999999999988
Q ss_pred cccc
Q psy8199 643 QTFN 646 (965)
Q Consensus 643 ~~~~ 646 (965)
+++.
T Consensus 399 ~al~ 402 (404)
T d2byla1 399 KTIL 402 (404)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
|
| >d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Acetylornithine/acetyl-lysine aminotransferase ArgD species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=3.1e-63 Score=553.91 Aligned_cols=362 Identities=26% Similarity=0.413 Sum_probs=326.6
Q ss_pred CCCce-----eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCC
Q psy8199 241 LPDDI-----SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLG 315 (965)
Q Consensus 241 ~p~~~-----~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~ 315 (965)
.|.++ +||||.|||+|||+.+++|+++|||+||+|++|+.+|++++.+.+ ..+.++...++++++.+..+.+.+
T Consensus 19 ~p~~i~ra~G~~l~d~dG~~ylD~~~g~~~~~lGh~hp~v~~a~~~~~~~~~~~~-~~~~~~~~~~la~~l~~~~~~~~~ 97 (387)
T d1vefa1 19 HDLLIVRGQGARVWDAEGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETLMAMP-QTLPTPMRGEFYRTLTAILPPELN 97 (387)
T ss_dssp CSSCEEEEEBTEEEETTSCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCCCCC-TTSCCHHHHHHHHHHHHTSCTTEE
T ss_pred CCceEEEeEcCEEEECCCCEEEEcchhHHhhhhcCCcHHHHHHHHHHHHhhcccc-cccCCchHHHHHHHhhhhccccce
Confidence 45555 999999999999999999999999999999999999999875543 456789999999999999887778
Q ss_pred eEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCC
Q psy8199 316 HCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNIN 395 (965)
Q Consensus 316 ~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (965)
+|+|++||||||+.|+|+||.| ++|.+|++++++|||++.+++++++.+.++..+.|....+.++|+
T Consensus 98 ~v~f~~sGseA~e~Aik~Ar~~------t~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~p~~~~~~~~p~------- 164 (387)
T d1vefa1 98 RVFPVNSGTEANEAALKFARAH------TGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPY------- 164 (387)
T ss_dssp EEEEESSHHHHHHHHHHHHHHH------HSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEEECT-------
T ss_pred eeccccCchHHHHHHHHHHHhh------cccceecccccCCCCCccceEeccCCccccCCCCCCCCCceEeCC-------
Confidence 9999999999999999999998 488999999999999999999999988888888888887778776
Q ss_pred CCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccc
Q psy8199 396 KGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFF 475 (965)
Q Consensus 396 ~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~ 475 (965)
+|+++|++.++ +++||||+|| +++++|.++++++||++|+++|++||+++|+|||+|||||+|.+|
T Consensus 165 ----------~d~~~l~~~~~---~~iAavi~EP-i~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~~~ 230 (387)
T d1vefa1 165 ----------NDVEALKRAVD---EETAAVILEP-VQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRF 230 (387)
T ss_dssp ----------TCHHHHHHHCC---TTEEEEEECS-EETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS
T ss_pred ----------CCHHHHHHhcC---CCeEEEEEEC-CCCCCCCccCCHHHHHHHHHHHHHcCceEEecccccccCccCCCc
Confidence 47788888774 6799999999 999999999999999999999999999999999999999999999
Q ss_pred cccccCCCcceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHH
Q psy8199 476 ACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRIS 555 (965)
Q Consensus 476 ~~~~~~~~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~ 555 (965)
+++++|+.||++|+||+|+|| +|++++++++++++.+.. ..|++||++||++|+||+++|++++++++.+++.
T Consensus 231 ~~~~~~v~PDi~~~gK~l~gG-~~~~~~~~~~~~~~~~~~------~~~g~T~~gnPla~aaa~a~L~~l~~~~~~~~v~ 303 (387)
T d1vefa1 231 AFEHFGIVPDILTLAKALGGG-VPLGVAVMREEVARSMPK------GGHGTTFGGNPLAMAAGVAAIRYLERTRLWERAA 303 (387)
T ss_dssp THHHHTCCCSEEEECGGGGTT-SSCEEEEEEHHHHHTSCT------TSSCCSSTTCHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred ccccCCcCCceeeecccCCCC-ccccccccceeeeecccc------CCccccCCCCcchhhhcccchhhcccccccchHh
Confidence 999999999999999999999 599999999999987755 4689999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec-CCEEEEeCCcccCHHHH
Q psy8199 556 QDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-GNTVYLMPPYILNKNEI 634 (965)
Q Consensus 556 ~~~~~l~~~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-~~~lR~~p~~~~t~~~i 634 (965)
+.+++++++|+++. .+.+.++++.|+|+++++. .+ ....+.+.++++|+++.+. ++.+||+||+++|++++
T Consensus 304 ~~g~~l~~~L~~l~-~~~v~~vrg~Gl~~~ie~~-~~------~~~~~~~~~~~~g~l~~~~g~~~ir~~Ppl~it~~~l 375 (387)
T d1vefa1 304 ELGPWFMEKLRAIP-SPKIREVRGMGLMVGLELK-EK------AAPYIARLEKEHRVLALQAGPTVIRFLPPLVIEKEDL 375 (387)
T ss_dssp HHHHHHHHHHHTSC-CTTEEEEEEETTEEEEEES-SC------SHHHHHHHHHHHCEECEESSTTEEEECCCTTCCHHHH
T ss_pred hhhHHHHHHHHhcC-CCceEEEeecceEEEEEEe-CC------chHHHHHHHHHCCCeEEecCCCEEEEECCccCCHHHH
Confidence 99999999999884 4678899999999999996 22 1335667788899887765 48999999999999999
Q ss_pred HHHHHhhhccc
Q psy8199 635 QHMTSAIFQTF 645 (965)
Q Consensus 635 ~~~~~~l~~~~ 645 (965)
+++++++++++
T Consensus 376 d~~~~~i~~aL 386 (387)
T d1vefa1 376 ERVVEAVRAVL 386 (387)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999987654
|
| >d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=100.00 E-value=4.9e-60 Score=532.84 Aligned_cols=368 Identities=25% Similarity=0.384 Sum_probs=300.5
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhH
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGAS 325 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGse 325 (965)
+||||.|||+|||+.+|+|+++|||+||+|++|+++|++++.+.+ ..+.+.+...+++.+.+.. +.+.++|++||++
T Consensus 31 ~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~v~~~~sgs~ 107 (404)
T d1z7da1 31 VFVYDVNDKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLTICS-RAFFSVPLGICERYLTNLL--GYDKVLMMNTGAE 107 (404)
T ss_dssp TEEEETTCCEEEESSHHHHTTTTCBTCHHHHHHHHHHHTTCSCCC-TTSEEHHHHHHHHHHHHHH--TCSEEEEESSHHH
T ss_pred CEEEECCCCEEEEccccHHHHhhhcCcHHHHHHHHHHHHhCCCcc-cccchHHHHHHHHhhhhcc--ccceeeeeccccc
Confidence 999999999999999999999999999999999999999876553 3345566666666666665 5789999999999
Q ss_pred HHHHHHHHHHHHHHhc--CCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHH
Q psy8199 326 AVEVALKMSFHYWYNK--GFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEI 403 (965)
Q Consensus 326 A~~~Al~~a~~~~~~~--g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (965)
|++.|++++++++..+ +...+.+++.+.++|||.+....+.++...++..+.+..+...+.|.+
T Consensus 108 a~~~a~k~ar~~~~~~~~~~~~~~~~~~~~~~~hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 173 (404)
T d1z7da1 108 ANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPYD-------------- 173 (404)
T ss_dssp HHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC--------------------------CEEEECTT--------------
T ss_pred hHHHHHHHHHHHHhhcccccccccccccccccCCCCcccccccccccccccCCCCCCccccccccc--------------
Confidence 9999999999986543 445667899999999999999999998777777777777777777653
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCC
Q psy8199 404 ARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIW 483 (965)
Q Consensus 404 ~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~ 483 (965)
+.++++..+. .+++||||+|| +++++|.++|+++||++|+++|++||++||+|||+|||||+|.+|+++++|+.
T Consensus 174 ---~~~~l~~~~~--~~~iAavi~EP-i~g~~G~~~~~~~fl~~l~~lc~~~g~llI~DEV~tGfgRtG~~~~~e~~gv~ 247 (404)
T d1z7da1 174 ---DLEALEEELK--DPNVCAFIVEP-IQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCVHHYNVK 247 (404)
T ss_dssp ---CHHHHHHHHT--STTEEEEEECS-SBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCC
T ss_pred ---hHHHHHHHhc--CCCEEEEEEEE-EcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccCCCcccccccccccCCC
Confidence 4567776664 56899999999 99999999999999999999999999999999999999999999999999999
Q ss_pred cceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Q psy8199 484 PDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITK 563 (965)
Q Consensus 484 pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~ 563 (965)
||++|+||+|+||++|+|++++++++++.+.. ..|++||++||++|+||+++|+++.++++.+++.+.++++.+
T Consensus 248 PDivt~gK~l~gG~~p~~~v~~~~~i~~~~~~------~~~~~T~~gnpl~~aaa~a~L~~~~~~~~~~~~~~~~~~~~~ 321 (404)
T d1z7da1 248 PDVILLGKALSGGHYPISAVLANDDIMLVIKP------GEHGSTYGGNPLAASICVEALNVLINEKLCENAEKLGGPFLE 321 (404)
T ss_dssp CSEEEECGGGGTTSSCCEEEEECHHHHTTCCT------TCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred CCEEEEcccccCCCCCcccccchHHHHccCCC------CCcCcCCCCCcchhhhhhhhhhhhhcchhhhhhccchhHHHH
Confidence 99999999999998899999999999987765 468999999999999999999999999999999999999999
Q ss_pred HHHcc-cCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecC-CEEEEeCCcccCHHHHHHHHHhh
Q psy8199 564 ALTSL-ITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG-NTVYLMPPYILNKNEIQHMTSAI 641 (965)
Q Consensus 564 ~L~~l-~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~-~~lR~~p~~~~t~~~i~~~~~~l 641 (965)
.+.++ .+++.+.+|+|.|+|+++++. .+. .....+...|+++|+++.+.+ +.|||+||+++++++++++++++
T Consensus 322 ~l~~~~~~~~~v~~vrg~Gl~~~i~~~-~~~----~~~~~~~~~l~~~Gl~~~~~~~~~ir~~Ppl~it~~~id~~~~~l 396 (404)
T d1z7da1 322 NLKRELKDSKIVRDVRGKGLLCAIEFK-NEL----VNVLDICLKLKENGLITRDVHDKTIRLTPPLCITKEQLDECTEII 396 (404)
T ss_dssp HHHHHHTTCTTEEEEEEETTEEEEEEC-TTT----CCHHHHHHHHHHTTEECCEETTTEEEECCCTTCCHHHHHHHHHHH
T ss_pred HHHHHHhcCCCeEEEEeeCcEEEEEEc-CCc----ccHHHHHHHHHhCCeEEecCCCCEEEEECCcCCCHHHHHHHHHHH
Confidence 99776 778889999999999999997 221 113357788999999998855 79999999999999999999999
Q ss_pred hccccc
Q psy8199 642 FQTFNE 647 (965)
Q Consensus 642 ~~~~~~ 647 (965)
++++.+
T Consensus 397 ~~alk~ 402 (404)
T d1z7da1 397 VKTVKF 402 (404)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 877644
|
| >d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=100.00 E-value=5.1e-60 Score=540.35 Aligned_cols=381 Identities=21% Similarity=0.289 Sum_probs=312.9
Q ss_pred eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccC----CCCcHHHHHHHHHHHhhcCCCCCeEEEcC
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLS----NLTHKPVIKLSEKLSSLTQYKLGHCFYGS 321 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~----~~~~~~~~~la~~l~~~~~~~~~~v~~~~ 321 (965)
+||||.|||+|||+.+|+|+++|||+||+|++|+.+|++...+.+.. ..+....++|+++|.+..+.+.++|+|++
T Consensus 45 ~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~~~a~~lae~l~~~~~~~~~~v~f~~ 124 (461)
T d1ohwa_ 45 NYLVDVDGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFINRPALGILPPENFVEKLRESLLSVAPKGMSQLITMA 124 (461)
T ss_dssp TEEEBTTSCEEEESSHHHHTCSSCBTCHHHHHHHHCGGGHHHHHCCCCTTTSCBTTHHHHHHHTGGGGCCTTCCEEEEES
T ss_pred CEEEECCCCEEEEcccCHHHHhhcCCcHHHHHHHHHHHhhhhhcccccccccchHHHHHHHHHHHHhhhccCcceeeeec
Confidence 89999999999999999999999999999999999999876543222 22344567888888888888899999999
Q ss_pred ChhHHHHHHHHHHHHHHHhcC--------------------CCCceEEEEEcCCccCCccccccccCCcCccchhcccCC
Q psy8199 322 DGASAVEVALKMSFHYWYNKG--------------------FLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLN 381 (965)
Q Consensus 322 sGseA~~~Al~~a~~~~~~~g--------------------~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~ 381 (965)
||||||+.|||+||.|+..++ .+++.+||+++++|||+|.+++++++.+.++..+.+...
T Consensus 125 sGseAve~Aik~Ar~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~~~~syHG~t~~a~s~tg~~~~~~~~~~~~~ 204 (461)
T d1ohwa_ 125 CGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFD 204 (461)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHTCCSCHHHHTTCCCCC
T ss_pred chhhhhHHHHHHHHHHhhhcccCcccccchhhhhhhhccccCCCCceEEEecCCcCCCCcccccccCCcccccccccccC
Confidence 999999999999999875542 245678999999999999999999998777766655443
Q ss_pred CeeEecCCCCCCCC-CCC-ChhHHHHHHHHHHHHHHH---hCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcC
Q psy8199 382 KTYIITTPDSRNIN-KGN-SANEIARCAIFDLEILLK---KNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYN 456 (965)
Q Consensus 382 ~~~~~~~~~~~~~~-~~~-~~~~~~~~d~~~le~~l~---~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g 456 (965)
... .|.+...... ... .......++++++++++. .++++++|||+|| +++++|.++||++||++|+++|++||
T Consensus 205 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iAavivEP-i~g~~G~~~~~~~fl~~lr~lc~~~g 282 (461)
T d1ohwa_ 205 WPI-APFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEP-IQSEGGDNHASDDFFRKLRDISRKHG 282 (461)
T ss_dssp CCE-ECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECS-SBCTTTCBCCCHHHHHHHHHHHHHTT
T ss_pred Ccc-cccccccccccccccccchhhhhhHHHHHHHHHHHHhCCCccceeeecc-ccccccccCchhhHHHHHHHHHHhhC
Confidence 332 3332221111 001 111233455566665553 4578899999999 99999999999999999999999999
Q ss_pred CeEEEeccccCCCcccccccccccCCC--cceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHH
Q psy8199 457 IHLIADEIAVGCGRTGKFFACEHAEIW--PDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLA 534 (965)
Q Consensus 457 ~llI~DEv~tg~gr~G~~~~~~~~~~~--pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~ 534 (965)
++||+|||||||||+|++|+++++|+. ||++|+||+++||+.+.++++. ...++.|++||++||++
T Consensus 283 illI~DEV~tG~gRtG~~~~~e~~gi~~~PDiv~~gK~l~~g~~~~~~~~~------------~~~~~~~~~T~~g~p~~ 350 (461)
T d1ohwa_ 283 CAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVMTFSKKMMTGGFFHKEEFR------------PNAPYRIFNTWLGDPSK 350 (461)
T ss_dssp CEEEEECTTTCSSTTSSSSGGGGGCCSSCCSEEEECGGGSSEEEEECGGGS------------CSSTTSSCCSCSSCHHH
T ss_pred cceeccccccccccccccccccccccccCchhhhhhhcccccccccccccc------------ccccccccccccccccc
Confidence 999999999999999999999999984 9999999999998644433221 12335689999999999
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcc-cCCC-ceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCc
Q psy8199 535 CCAALATLEIFNKDNILQRISQDMKKITKALTSL-ITHP-KIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNEL 612 (965)
Q Consensus 535 ~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l-~~~~-~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi 612 (965)
|++|+++|++++++++.+++++++++|.++|+++ .++| .+.+|||.|+|+++++. + ...+.++...|+++|+
T Consensus 351 ~aaa~a~l~~i~~~~l~~~~~~~g~~l~~~l~~l~~~~~~~i~~vrG~Gl~~~ie~~--~----~~~~~~i~~~~~~~Gl 424 (461)
T d1ohwa_ 351 NLLLAEVINIIKREDLLSNAAHAGKVLLTGLLDLQARYPQFISRVRGRGTFCSFDTP--D----ESIRNKLISIARNKGV 424 (461)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTTCEEEEEETTEEEEECS--S----HHHHHHHHHHHHHTTE
T ss_pred chhhcccchhhhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEeeeeeEEEEEEcC--C----HHHHHHHHHHHHHCCe
Confidence 9999999999999999999999999999999998 5676 57899999999999986 2 3456678899999999
Q ss_pred EEeecC-CEEEEeCCcccCHHHHHHHHHhhhcccc
Q psy8199 613 LLRPIG-NTVYLMPPYILNKNEIQHMTSAIFQTFN 646 (965)
Q Consensus 613 ~~~~~~-~~lR~~p~~~~t~~~i~~~~~~l~~~~~ 646 (965)
++.+.+ ++|||.||+++|+++++++++++++++.
T Consensus 425 l~~~~~~~~ir~~PpL~it~~eid~~~~~l~~~l~ 459 (461)
T d1ohwa_ 425 MLGGCGDKSIRFRPTLVFRDHHAHLFLNIFSDILA 459 (461)
T ss_dssp ECEEETTTEEECCCCTTCCHHHHHHHHHHHHHHHH
T ss_pred EEeeCCCCEEEEeCCcCCCHHHHHHHHHHHHHHHh
Confidence 998855 7999999999999999999999887654
|
| >d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Glutamate-1-semialdehyde aminomutase (aminotransferase) species: Synechococcus sp., strain GR6 [TaxId: 1131]
Probab=100.00 E-value=2.9e-59 Score=529.87 Aligned_cols=398 Identities=20% Similarity=0.225 Sum_probs=321.0
Q ss_pred cccccccccccCcccccccccCCCce-----eEEEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCC
Q psy8199 220 HAYKLGLIHPKNNLKLKWRINLPDDI-----SKLITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNL 294 (965)
Q Consensus 220 ha~~l~f~~p~~~~~~~~~~~~p~~~-----~~~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~ 294 (965)
+..+-++.+|+....... ..|.++ +||||.|||+|||+.+++|+++|||+||+|++|+++|++++.+. ..
T Consensus 15 ~~~~~g~~~~~~~~~~~~--~~P~~i~~a~G~~l~D~~G~~ylD~~~~~~~~~lGh~hp~i~~ai~~~~~~~~~~---~~ 89 (427)
T d2gsaa_ 15 KLMPGGVSSPVRAFKSVG--GQPIVFDRVKDAYAWDVDGNRYIDYVGTWGPAICGHAHPEVIEALKVAMEKGTSF---GA 89 (427)
T ss_dssp HHSGGGSSSGGGCCTTTS--SCCCCEEEEEBTEEEETTSCEEEESSGGGTTTTTCBTCHHHHHHHHHHHTTCSCC---SS
T ss_pred hhcCCCCCCCccccccCC--CCCcEEEEeecCEEEECCCCEEEEechhHHHHhccCCcHHHHHHHHHHHHhcCcc---cc
Confidence 333444455554433322 357766 99999999999999999999999999999999999999986443 34
Q ss_pred CcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccc
Q psy8199 295 THKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKE 374 (965)
Q Consensus 295 ~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~ 374 (965)
.+.....+++.+.+..| ..++|+|++||+|||+.|+|+|+.| ++|.+||+++++|||+|.+++++++......
T Consensus 90 ~~~~~~~la~~~~~~~~-~~~~v~f~~sGseA~e~Alk~ar~~------t~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~ 162 (427)
T d2gsaa_ 90 PCALENVLAEMVNDAVP-SIEMVRFVNSGTEACMAVLRLMRAY------TGRDKIIKFEGCYHGHADMFLVKAGSGVATL 162 (427)
T ss_dssp CCHHHHHHHHHHHHHST-TCSEEEEESSHHHHHHHHHHHHHHH------HCCCEEEEETTCCCCSCGGGCSSCCHHHHHT
T ss_pred chhHHHHHHHHHHhhCC-ccccccccCCcHHHHHHHHHHHHHh------cCCCeEEEEecccccCcceeeeecCCccccc
Confidence 56777889999998876 6789999999999999999999998 4899999999999999999999998543221
Q ss_pred hhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHh
Q psy8199 375 IYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNN 454 (965)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~ 454 (965)
.+ +..+.....+.+. ...+.++|+++||++++++++++++||+|| +++++|.++||++||++|+++|++
T Consensus 163 ~~-p~~~~~~~~~~~~---------~~~~~~~~~~~le~~~~~~~~~iaavi~Ep-i~g~~G~~~~~~~~l~~l~~lc~~ 231 (427)
T d2gsaa_ 163 GL-PSSPGVPKKTTAN---------TLTTPYNDLEAVKALFAENPGEIAGVILEP-IVGNSGFIVPDAGFLEGLREITLE 231 (427)
T ss_dssp TC-CSCSSSCHHHHTT---------EEEECTTCHHHHHHHHTTSTTTEEEEEECS-SBCSSSCBCCCTTHHHHHHHHHHH
T ss_pred CC-CCCCCCcccCccc---------eeccCcchHHHHHHHHHhCCCCeEEEEEcC-CcCCCCCccCCHHHHHHHHHHHHH
Confidence 11 1111111111110 011223689999999998888999999999 999999999999999999999999
Q ss_pred cCCeEEEeccccCCCcccccccccccCCCcceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHH
Q psy8199 455 YNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLA 534 (965)
Q Consensus 455 ~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~ 534 (965)
||++||+|||+||| |+|++|+++++|+.||++|+||+++|| +|+|++++++++++.+... ..+.|++||++||++
T Consensus 232 ~~~llI~DEv~tG~-r~g~~~~~~~~gi~PDi~~~gK~lggG-~p~~a~~~~~~i~~~~~~~---~~~~~~~T~~gnpla 306 (427)
T d2gsaa_ 232 HDALLVFDEVMTGF-RIAYGGVQEKFGVTPDLTTLGKIIGGG-LPVGAYGGKREIMQLVAPA---GPMYQAGTLSGNPLA 306 (427)
T ss_dssp TTCEEEEECTTTBT-TTBTTCHHHHTTCCCSEEEECGGGGTT-SCCEEEEECHHHHTTBTTT---SSBCCCCTTTTCHHH
T ss_pred hceeeeeccccccc-eecccchHHhcCCCHHHHhhhhccCCC-cceeeeeehHHHHHHhccc---CCCcCCCCCCCCchh
Confidence 99999999999999 789999999999999999999999999 6999999999999988642 345789999999999
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcc-cCCCceeeeeceeEEEEEEEeecCcc-------chhhHHHHHHHH
Q psy8199 535 CCAALATLEIFNKDNILQRISQDMKKITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDPE-------QIETFSKKFFVA 606 (965)
Q Consensus 535 ~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l-~~~~~i~~v~g~G~~~~i~~~~~~~~-------~~~~~~~~~~~~ 606 (965)
|+||+++|++++++++.+++++++++|+++|+++ .+++....+.+.|.|+++.+...... ........+...
T Consensus 307 ~AAala~Le~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~v~~~ggm~~i~~~~~~v~~~~~~~~~d~~~~~~~~~~ 386 (427)
T d2gsaa_ 307 MTAGIKTLELLRQPGTYEYLDQITKRLSDGLLAIAQETGHAACGGQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRG 386 (427)
T ss_dssp HHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHH
T ss_pred hHHHHHhhHHhhhhhHHhhhhHHHHHHHHHHHHHHhhcCCCcEEcccCCeEEEEEeccCCCCHHHhhcccHHHHHHHHHH
Confidence 9999999999999999999999999999999998 56665556667677777776411111 011233467788
Q ss_pred HHHcCcEEeecCCEEEEeCCcccCHHHHHHHHHhhhcccc
Q psy8199 607 ALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFN 646 (965)
Q Consensus 607 l~~~Gi~~~~~~~~lR~~p~~~~t~~~i~~~~~~l~~~~~ 646 (965)
|+++||++.|.+. .++.||+++|+++|+++++++++++.
T Consensus 387 ll~~Gv~l~p~~~-~~~~~~l~~Te~dId~~l~al~~al~ 425 (427)
T d2gsaa_ 387 MLEQGIYLAPSQF-EAGFTSLAHTEEDIDATLAAARTVMS 425 (427)
T ss_dssp HHHTTEECCSSTT-SCEECCTTCCHHHHHHHHHHHHHHHT
T ss_pred HHHCCEEECCCCC-cceeCCCCCCHHHHHHHHHHHHHHHH
Confidence 9999999988653 23458899999999999999887654
|
| >d1r30a_ c.1.28.1 (A:) Biotin synthase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Radical SAM enzymes family: Biotin synthase domain: Biotin synthase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.3e-47 Score=416.28 Aligned_cols=310 Identities=56% Similarity=0.977 Sum_probs=288.2
Q ss_pred cccHHHHHHhcCCCchhHHHHHHHHHHHhcCCCeEEEeEeEeeccCCCCCCCCCCCCCCcCCCCcccccCCCHHHHHHHH
Q psy8199 645 FNELDEVINLFNLPFNDLLFRAQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAA 724 (965)
Q Consensus 645 ~~~~~e~l~l~~~~~~~l~~~a~~~~~~~~~g~~~~~~~~i~~~s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~ 724 (965)
+++.+|++.|++.++.+|+..|+++++++|+++.+++...+++.||+|+++|.||++++.++.....++.+++|++++++
T Consensus 3 r~s~ee~~~L~~~~~~dL~~~A~~v~r~~~~~~~~~~~~~~~~~TngC~~~C~fC~~~~~~~~~~~~~~~~~~e~i~~~~ 82 (312)
T d1r30a_ 3 RWTLSQVTELFEKPLLDLLFEAQQVHRQHFDPRQVQVSTLLSIKTGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLESA 82 (312)
T ss_dssp CCCSTTTHHHHHSCHHHHHHHHHHHHHHHSCTTCCEEEEEEEEECSCBSSCCSSCSCBTTSCTTCCCCCCCCHHHHHHHH
T ss_pred CCCHHHHHHHHcCCHHHHHHHHHHHHHHHcCCCEEEEeeeeEeeCCCCCCcCCcCCCCccCCCCCccccccchHHHHHHH
Confidence 45668888999889999999999999999977878888887776999999999999987665555556668999999999
Q ss_pred HHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHhcCcEeEEecCCCCHHHHHHHHHhCCCeEeccCCCCHHHHhccc
Q psy8199 725 QKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDII 804 (965)
Q Consensus 725 ~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~~es~~~~~~~i~ 804 (965)
+++.+.|++++++++|.++......++++++++.+++..+.++++.+.++++.++.||+||++.+.+++||+++.+..++
T Consensus 83 ~~~~~~G~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~e~l~~lk~aG~~~i~~~iEs~~~~~~~~~ 162 (312)
T d1r30a_ 83 RKAKAAGSTRFCMGAAWKNPHERDMPYLEQMVQGVKAMGLEACMTLGTLSESQAQRLANAGLDYYNHNLDTSPEFYGNII 162 (312)
T ss_dssp HHHHHTTCSEEEEEECCSSCCTTTHHHHHHHHHHHHHTTSEEEEECSSCCHHHHHHHHHHCCCEEECCCBSCHHHHHHHC
T ss_pred HHHHHcCCEEEEEccCCCCCchhhHHHHHHHHHhcccccceeeeccccchHHHHHHhhcccceeEecccchhhhhhccCC
Confidence 99999999999999998876677899999999999999999999999999999999999999999999999888999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCCCCCCCHHHHHH
Q psy8199 805 STRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIR 884 (965)
Q Consensus 805 ~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~~~~~~~~~~~~ 884 (965)
+++++++++++++.++++|+++++++|+|+|||.+|+++++..+++++..+..++++.++|.|||||++.++++++++++
T Consensus 163 ~~~~~~~~~~~~~~a~~~Gi~~~~~~i~G~~et~~d~~~~l~~l~~l~~~~~~i~~~~~~p~~gT~l~~~~~~~~~e~l~ 242 (312)
T d1r30a_ 163 TTRTYQERLDTLEKVRDAGIKVCSGGIVGLGETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAFDFIR 242 (312)
T ss_dssp CSSCHHHHHHHHHHHHHHHCEEECCEEECSSCCHHHHHHHHHHHHSSSSCCSEEEEEECCCCTTSTTSSCCCCCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhccceecceEecCcCcHHHHHHHHHHHHhcCCCCCeeeeccccCCCCcccccccCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999998744678999999999999999999999999999
Q ss_pred HHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeCCccccCCCCCChhhHHHHHHcCCCcchh
Q psy8199 885 TIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLLKKLGINTRNI 954 (965)
Q Consensus 885 ~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~~~~~g~~~~~~ 954 (965)
++|++|+++|+..|+++++|+.++.++++.+|.+|||++|+|++++|++|++++++++||+++|++|.++
T Consensus 243 ~iA~~Rl~lp~~~i~i~~~~~~~~~~~~~~~L~~Gan~~~~~~~~~t~~~~~~~~~~~~i~~~G~~P~~~ 312 (312)
T d1r30a_ 243 TIAVARIMMPTSYVRLSAGREQMNEQTQAMCFMAGANSIFYGCKLLTTPNPEEDKDLQLFRKLGLNPQQT 312 (312)
T ss_dssp HHHHHHHHCTTSEEEEESSGGGSCHHHHHHHHHHTCCEEECSSBSSSSBCCCHHHHHHHHHHTTCCSCCC
T ss_pred HHHHHHHhCCCcceEEEechhhcCHHHHHHHHhcCCcEEEecCccccCCCCCHHHHHHHHHHcCCCcCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999864
|
| >d1v9fa_ d.265.1.3 (A:) Ribosomal large subunit pseudouridine synthase D, RluD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Pseudouridine synthase superfamily: Pseudouridine synthase family: Pseudouridine synthase RsuA/RluD domain: Ribosomal large subunit pseudouridine synthase D, RluD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.4e-43 Score=366.79 Aligned_cols=213 Identities=45% Similarity=0.729 Sum_probs=182.7
Q ss_pred ccCCCccEEEecCcEEEEECCCCCeeeeCCCCCcccHHHHHHHHCCcccCCCCccccccCCCCCceEEEeEeCHHHHHHH
Q psy8199 24 KKVIKLDIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHL 103 (965)
Q Consensus 24 ~~~~~~~i~~e~~~~lv~nKP~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~RLD~~tsGlll~a~~~~~~~~l 103 (965)
++..+++|||||++++|||||+|++||++.+....++.+.+...+......+.+.+|||||++||||||||||+++++.|
T Consensus 3 P~~~~l~IlyeD~~~ivvnKP~gl~~hp~~~~~~~t~~~~l~~~~~~~~~~~~~~~vHRLDr~TSGlll~Ak~~~a~~~l 82 (250)
T d1v9fa_ 3 PQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRL 82 (250)
T ss_dssp CCCCCCCEEEECSSEEEEEECSSCCSSCBTTBSSSSHHHHHHHHCGGGGGSGGGGBCCCCCTTCEEEEEEESSHHHHHHH
T ss_pred CCCCCCCEEEECCCEEEEECCCCCCCcCCCCCCCccHHHHHHHHhhhccCCCceeEEeecCCCCcceEEEecccHHHHhh
Confidence 34556899999999999999999999998877677899988887765555667889999999999999999999999999
Q ss_pred HHHHHcCCcCeEEEEEEcCccCCCceEeeccccCCCCCeeEEEccCCCCcceEEEEEEeEEeeccCCcEEEEEEEeCCCc
Q psy8199 104 VNQLKMHIVQRKYLAMVWGIPKLNGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGR 183 (965)
Q Consensus 104 ~~~~~~~~~~K~Y~a~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~s~~~~~~~tGr 183 (965)
+++|+++.+.|+|+|++.|.+..++.+..++.........+.+.. ++|+|.|.|+++... ..+|+++++|.|||
T Consensus 83 ~~~f~~~~v~K~Y~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~gk~a~T~~~~l~~~----~~~slv~~~~~TGR 156 (250)
T d1v9fa_ 83 VESLQRREITREYEAVAIGHMTAGGTVDEPISRHPTKRTHMAVHP--MGKPAVTHYRIMEHF----RVHTRLRLRLETGR 156 (250)
T ss_dssp HHHHHTTCSEEEEEEEEESCCCCCEEEECCEEECSSCTTCEEECT--TSBCCEEEEEEEEEC----SSEEEEEEEESCCC
T ss_pred hhhhccceEeEEeeeeeccccccccccccccccCCcccceeEECC--CCeeccccchhhhcc----cCceeEEEEecccc
Confidence 999999999999999999999888888888877766666666654 789999999999986 78999999999999
Q ss_pred ccHHHHHHHHhCCceecCCCCCcccccc-----------cccccccccccccccccccCcccccccccCCCc
Q psy8199 184 THQIRVHMQWLGHGIVGDNLYGKKYSKS-----------LIFNRQALHAYKLGLIHPKNNLKLKWRINLPDD 244 (965)
Q Consensus 184 ~hQIR~~~~~~g~pi~gD~~~~~~~~~~-----------~~~~~~~Lha~~l~f~~p~~~~~~~~~~~~p~~ 244 (965)
+||||+||+++||||+||++||+..... ..+.|++||++++.|.||.++....+ .+|++
T Consensus 157 ~HQIRvHla~lG~PIlGD~~YG~~~~~~~~~~~~~~~~~~~~~r~~LHA~~L~f~hP~t~~~~~~--~aplP 226 (250)
T d1v9fa_ 157 THQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEW--HAPIP 226 (250)
T ss_dssp TTHHHHHHHHTTCCBTTCTTTTCCCCCCTTCCHHHHHHHHHCCSCSEEEEEEEEECTTTCCEEEE--ECCCC
T ss_pred hHHHHHHHHHhCCccceeccCcccccccccccHHHHHHHhccchhhhhcCccccccCCCCCeEEE--EeCCc
Confidence 9999999999999999999999643210 22468999999999999988766543 34443
|
| >d1v9ka_ d.265.1.3 (A:) Ribosomal large subunit pseudouridine synthase C, RluC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Pseudouridine synthase superfamily: Pseudouridine synthase family: Pseudouridine synthase RsuA/RluD domain: Ribosomal large subunit pseudouridine synthase C, RluC species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.9e-42 Score=352.44 Aligned_cols=205 Identities=34% Similarity=0.474 Sum_probs=169.3
Q ss_pred cEEEecCcEEEEECCCCCeeeeCCCCCcccHHHHHHHHCCcccCCCCccccccCCCCCceEEEeEeCHHHHHHHHHHHHc
Q psy8199 30 DIIYEDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKM 109 (965)
Q Consensus 30 ~i~~e~~~~lv~nKP~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~RLD~~tsGlll~a~~~~~~~~l~~~~~~ 109 (965)
-|||||++++|||||+|++||++... ..++.+.+....+. ...+.+|||||++||||||||||+++++.|+++|++
T Consensus 2 ~IlyeD~~ilvvnKP~gl~~h~~~~~-~~~~~~~l~~~~~~---~~~~~~vHRLD~~TSGlll~Ak~~~~~~~l~~~f~~ 77 (227)
T d1v9ka_ 2 VIMYEDDHILVLNKPSGTAVHGGSGL-SFGVIEGLRALRPE---ARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLRE 77 (227)
T ss_dssp CEEEECSSEEEEEECTTSCSSCCSSS-BCCHHHHHHHHSTT---CSCCEESSCCCTTCEEEEEEESSHHHHHHHHHHHHT
T ss_pred EEEEeCCCEEEEECCCCCccCCCCCC-cchHHHHHHHhCCC---CcccceeeeccceeeeeeeeecchHHHHHHHHHHhc
Confidence 38999999999999999999987654 44677777665542 346789999999999999999999999999999999
Q ss_pred CCcCeEEEEEEcCccCC-CceEeeccccCCCCCeeEEEccCCCCcceEEEEEEeEEeeccCCcEEEEEEEeCCCcccHHH
Q psy8199 110 HIVQRKYLAMVWGIPKL-NGMINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIR 188 (965)
Q Consensus 110 ~~~~K~Y~a~v~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~s~~~~~~~tGr~hQIR 188 (965)
+.+.|+|+|+|.|.++. .+.+..++..+........+....+++.+.|.|++++.. ..+++++|+|.|||+||||
T Consensus 78 ~~v~K~Y~a~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~a~t~~~~l~~~----~~~slv~~~~~TGRtHQIR 153 (227)
T d1v9ka_ 78 KGMQKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERY----AFATLVRCSPVTGRTHQIR 153 (227)
T ss_dssp TCSEEEEEEEEESCCCTTCCEECCCEEEEECTTSCEEEEECTTSBCCCEEEEEEEEC----SSEEEEEEEESSCCTTHHH
T ss_pred ccccceecccccCccccccCccccccccccccceeeeeecCCCCcccceeehhhhhc----CCcEEEEEEeccCchHHHH
Confidence 99999999999999875 467777766654443334444445899999999999986 7899999999999999999
Q ss_pred HHHHHhCCceecCCCCCcccc------cccccccccccccccccccccCcccccccccCCCc
Q psy8199 189 VHMQWLGHGIVGDNLYGKKYS------KSLIFNRQALHAYKLGLIHPKNNLKLKWRINLPDD 244 (965)
Q Consensus 189 ~~~~~~g~pi~gD~~~~~~~~------~~~~~~~~~Lha~~l~f~~p~~~~~~~~~~~~p~~ 244 (965)
+||+++||||+||++||.+.. ....+.+++||++++.|.||.++....+ .+|++
T Consensus 154 vHla~lG~PIvGD~~Yg~~~~~~~~~~~~~~~~rl~LHa~~L~f~hP~t~~~~~~--~aplP 213 (227)
T d1v9ka_ 154 VHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRI--EAPMD 213 (227)
T ss_dssp HHHHHTTCCBTTCTTTSCHHHHHHHHHTTCCCCSCCEEEEEEEEECTTTCCEEEE--ECCCC
T ss_pred HHHhhcCceeccCcccccccccccchhcccCcchHHHHccccEeECCCCCCEEEE--EecCc
Confidence 999999999999999997531 1234578999999999999998876553 35543
|
| >d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 2-amino-3-ketobutyrate CoA ligase species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=9.2e-31 Score=292.26 Aligned_cols=339 Identities=14% Similarity=0.159 Sum_probs=250.1
Q ss_pred eEEEecCCcccccccccchhccCCCC-CHHHHHHHHHHHhhccccccC----CCCcHHHHHHHHHHHhhcCCCCCeEEEc
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHS-NSYINKALKNQLNKLEHVMLS----NLTHKPVIKLSEKLSSLTQYKLGHCFYG 320 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~-~p~v~~av~~~~~~~~~~~~~----~~~~~~~~~la~~l~~~~~~~~~~v~~~ 320 (965)
+++||.||++||||.|+ .+||+. ||+|++|+++++++.+....+ .+..+...+|+++|++++ +.+.++++
T Consensus 37 ~~v~~~dG~~~l~f~s~---dYLGl~~hp~v~~a~~~a~~~~g~~~~~sr~~~g~~~~~~~lE~~lA~~~--g~e~al~~ 111 (401)
T d1fc4a_ 37 ADITVADGSHVINFCAN---NYLGLANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFL--GMEDAILY 111 (401)
T ss_dssp SEEEBTTSCEEEECCCS---CTTSCTTCHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHHHHH--TCSEEEEE
T ss_pred CeEEecCCCEEEEEEcc---ccccccCCHHHHHHHHHHHHHhCCCcccceeeccCcHHHHHHHHHHHHhh--cCCceEEe
Confidence 78999999999999875 679987 999999999999886432211 135788899999999999 57899999
Q ss_pred CChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCCh
Q psy8199 321 SDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSA 400 (965)
Q Consensus 321 ~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (965)
+||++|+..+++.. .++..+|+.+...|.+...+...+.. ....++..
T Consensus 112 ~SG~~An~~~i~~l---------~~~~d~i~~d~~~h~s~~~G~~~~~a------------~~~~~~~~----------- 159 (401)
T d1fc4a_ 112 SSCFDANGGLFETL---------LGAEDAIISDALNHASIIDGVRLCKA------------KRYRYANN----------- 159 (401)
T ss_dssp SCHHHHHHTTHHHH---------CCTTCEEEEETTCCHHHHHHHHTSCS------------EEEEECTT-----------
T ss_pred cchhhhhHHHHHHh---------cCCCcEEEeCCcchHHHHccccccCc------------eEEEEcCC-----------
Confidence 99999999999866 24455566666677765544443331 11222221
Q ss_pred hHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccc--ccccc
Q psy8199 401 NEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK--FFACE 478 (965)
Q Consensus 401 ~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~--~~~~~ 478 (965)
+.++++.+.+.+++.+...++|++|+ ++++.|.+.| |+++++||++||++||+||+|+ +|..|. .+..+
T Consensus 160 ---d~~~le~~~~~~~~~~~~~~liv~eg-v~s~~G~~~~----L~~l~~L~~~~~a~LivDeah~-~g~~g~~G~G~~~ 230 (401)
T d1fc4a_ 160 ---DMQELEARLKEAREAGARHVLIATDG-VFSMDGVIAN----LKGVCDLADKYDALVMVDDSHA-VGFVGENGRGSHE 230 (401)
T ss_dssp ---CHHHHHHHHHHHHHTTCSSEEEEEES-EETTTTEECC----HHHHHHHHHHTTEEEEEECTTT-TTTSSTTSCCHHH
T ss_pred ---ChHHHHHHHHHhhhcccCceEEEEcC-CCCCCCchhh----hhHHHHHHhhcCcEEEehhhhc-cccccCCCCccch
Confidence 11344444444444456778999999 9999998887 9999999999999999999997 556654 34566
Q ss_pred ccCCC--ccee--eeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc-ccHHHH
Q psy8199 479 HAEIW--PDFL--CLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK-DNILQR 553 (965)
Q Consensus 479 ~~~~~--pDiv--t~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~-~~~~~~ 553 (965)
++++. +|++ |+||+++| .+.|++++++++++.+... .+++ .++.+.+|..+++++++++.+.. +++.++
T Consensus 231 ~~~~~~~~dii~~tl~Ka~gg--~~Gg~v~g~~~~~~~l~~~--~~~~--~~s~~l~p~~~~aa~~~l~~~~~~~~~~~~ 304 (401)
T d1fc4a_ 231 YCDVMGRVDIITGTLGKALGG--ASGGYTAARKEVVEWLRQR--SRPY--LFSNSLAPAIVAASIKVLEMVEAGSELRDR 304 (401)
T ss_dssp HTTCTTCCSEEEEESSSTTCS--SSCEEEEECHHHHHHHHHH--CHHH--HHSCCCCHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred hccCCCCCeEEEeeccccccc--CCcccccCCHHHHHHHHcC--Chhh--hhcCCCCHHHHHHHHhhhcccccCHHHHHH
Confidence 67764 5665 79999965 4678899999999988651 1222 24556788899999999987764 557899
Q ss_pred HHHHHHHHHHHHHcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec-------C-CEEEEeC
Q psy8199 554 ISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-------G-NTVYLMP 625 (965)
Q Consensus 554 ~~~~~~~l~~~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-------~-~~lR~~p 625 (965)
++++.+++++.+... ++......+.++.+.+. + ...+..+.+.|+++||++.+. + ..+|+++
T Consensus 305 l~~~~~~~~~~l~~~----g~~~~~~~~pIv~v~~~--~----~~~a~~~~~~L~~~Gi~v~~i~~PtVp~g~~~lRi~~ 374 (401)
T d1fc4a_ 305 LWANARQFREQMSAA----GFTLAGADHAIIPVMLG--D----AVVAQKFARELQKEGIYVTGFFYPVVPKGQARIRTQM 374 (401)
T ss_dssp HHHHHHHHHHHHHHT----TCCBCCSSSSEEEEEEE--C----HHHHHHHHHHHHHTTEECCEECTTSSCTTCEEEEEEC
T ss_pred HHHHHHHHHhhhccc----CCccCCCCCCEEEEEEC--C----HHHHHHHHHHHHHCCceEEeECCCCCCCCCceEEEEE
Confidence 999999999998775 22222334455555554 3 233557889999999998642 2 4699999
Q ss_pred CcccCHHHHHHHHHhhhcccc
Q psy8199 626 PYILNKNEIQHMTSAIFQTFN 646 (965)
Q Consensus 626 ~~~~t~~~i~~~~~~l~~~~~ 646 (965)
+..+|+++|+++++++.++..
T Consensus 375 ~a~hT~edId~~v~al~ev~~ 395 (401)
T d1fc4a_ 375 SAAHTPEQITRAVEAFTRIGK 395 (401)
T ss_dssp CTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999887643
|
| >d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) species: Escherichia coli [TaxId: 562]
Probab=99.96 E-value=7.5e-28 Score=267.05 Aligned_cols=331 Identities=15% Similarity=0.137 Sum_probs=252.8
Q ss_pred eEEEecCCcccccccccchhccCCCC-CHHHHHHHHHHHhhcccc-c---cCCCCcHHHHHHHHHHHhhcCCCCCeEEEc
Q psy8199 246 SKLITFSGKRYLDAISSWWVNLFGHS-NSYINKALKNQLNKLEHV-M---LSNLTHKPVIKLSEKLSSLTQYKLGHCFYG 320 (965)
Q Consensus 246 ~~~~d~dG~~ylD~~~~~~~~~lGh~-~p~v~~av~~~~~~~~~~-~---~~~~~~~~~~~la~~l~~~~~~~~~~v~~~ 320 (965)
.|+. .||++||||.|+ .+||.. ||++++|+.+++++.+.. + ...+..+...+|+++|++++ +.+.++++
T Consensus 31 ~~i~-~~g~~~l~f~s~---dYLGl~~~p~v~~a~~~a~~~~G~~~~~sr~~~g~~~~~~~lE~~LA~~~--g~e~al~~ 104 (383)
T d1bs0a_ 31 RWLV-ADDRQYLNFSSN---DYLGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWL--GYSRALLF 104 (383)
T ss_dssp SEEE-ETTEEEEECSCC---CTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHH--TCSEEEEE
T ss_pred CeEE-ECCeEEEEEEcc---cccccCCCHHHHHHHHHHHHHhCCCCCccccccCcchHHHHHHHHHHHhc--CCCceEEe
Confidence 5675 899999999885 668875 999999999999985322 1 12356788999999999999 57899999
Q ss_pred CChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCCh
Q psy8199 321 SDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSA 400 (965)
Q Consensus 321 ~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (965)
+||+.|+..++... .++..+++.+...|.+...+...++. ....++.
T Consensus 105 ~SG~~an~~~i~al---------~~~~d~v~~d~~~h~si~~g~~~~~~------------~~~~~~h------------ 151 (383)
T d1bs0a_ 105 ISGFAANQAVIAAM---------MAKEDRIAADRLSHASLLEAASLSPS------------QLRRFAH------------ 151 (383)
T ss_dssp SCHHHHHHHHHHHH---------CCTTCEEEEETTCCHHHHHHHHTSSS------------EEEEECT------------
T ss_pred cccchhhHHHHHhh---------cCCCceEEeeccccHHHhhccccCCC------------cceEecc------------
Confidence 99999999999876 45667788888888886555443321 2222222
Q ss_pred hHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccc--ccccc
Q psy8199 401 NEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK--FFACE 478 (965)
Q Consensus 401 ~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~--~~~~~ 478 (965)
+|+++|++.+.+..++..+|++|+ ++++.|.+.| +++|.++|++||+++|+||+|+ +|-.|. .+..+
T Consensus 152 -----nd~~~le~~l~~~~~~~~~vv~e~-v~s~~G~i~p----l~~l~~l~~~~~~~livDeah~-~gv~G~~g~G~~~ 220 (383)
T d1bs0a_ 152 -----NDVTHLARLLASPCPGQQMVVTEG-VFSMDGDSAP----LAEIQQVTQQHNGWLMVDDAHG-TGVIGEQGRGSCW 220 (383)
T ss_dssp -----TCHHHHHHHHHSCCSSCEEEEEES-BCTTTCCBCC----HHHHHHHHHHTTCEEEEECTTT-TTTSSGGGCCHHH
T ss_pred -----hHHHHHHHHhcccCCCceEEEecC-CCCCCCcccc----hhHHHHHHHhcCcEEEeeccee-eeecCCcccchHH
Confidence 689999999988777778999999 9999999998 9999999999999999999997 555554 23467
Q ss_pred ccCCCcceee--eccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcc---cHHHH
Q psy8199 479 HAEIWPDFLC--LSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKD---NILQR 553 (965)
Q Consensus 479 ~~~~~pDivt--~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~---~~~~~ 553 (965)
++++.+|+++ +||+++. +.|+++++.++++.+... .++ +..+...+|..+++++++++.++.. ...++
T Consensus 221 ~~~~~~~~~~~t~~ka~g~---~Gg~v~~~~~~~~~l~~~--~~~--~~~s~~~~p~~~aa~~~a~~~~~~~~~~~~~~~ 293 (383)
T d1bs0a_ 221 LQKVKPELLVVTFGKGFGV---SGAAVLCSSTVADYLLQF--ARH--LIYSTSMPPAQAQALRASLAVIRSDEGDARREK 293 (383)
T ss_dssp HTTCCCSEEEEESSSTTSS---CCEEEEECHHHHHHHHHH--CHH--HHSSBCCCHHHHHHHHHHHHHHHSHHHHHHHHH
T ss_pred HcCCccccccccccccccc---cccccccchhHHHHHHhh--chh--hhhcccccchHHHHHHHHHHHHHhhhhHHHHHH
Confidence 8899888774 6777655 458899999999888652 222 3355567888889999999887643 35667
Q ss_pred HHHHHHHHHHHHHcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec-------C-CEEEEeC
Q psy8199 554 ISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-------G-NTVYLMP 625 (965)
Q Consensus 554 ~~~~~~~l~~~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-------~-~~lR~~p 625 (965)
+.++..++++.|.++ ++....+.+.++.+.+. + ...+..+.+.|+++||++.+. + ..+|+++
T Consensus 294 l~~~~~~~~~~l~~~----g~~~~~~~s~Ii~v~~g--~----~~~a~~~~~~L~~~Gi~v~~~~~PtVp~g~~~lRi~~ 363 (383)
T d1bs0a_ 294 LAALITRFRAGVQDL----PFTLADSCSAIQPLIVG--D----NSRALQLAEKLRQQGCWVTAIRPPTVPAGTARLRLTL 363 (383)
T ss_dssp HHHHHHHHHHHHTTS----SCEECSCCSSBCCEEEE--S----HHHHHHHHHHHHHTTEECCEECTTSSCTTCEEECCBC
T ss_pred HHHHHHHHHHHHHhc----CCccCCCCCCEEEEEEC--C----HHHHHHHHHHHHHCCceEEEEcCCCCCCCCceEEEEe
Confidence 778888888888765 23333444555555553 2 233557889999999998642 2 4799999
Q ss_pred CcccCHHHHHHHHHhhhc
Q psy8199 626 PYILNKNEIQHMTSAIFQ 643 (965)
Q Consensus 626 ~~~~t~~~i~~~~~~l~~ 643 (965)
+..+|+++|+++++.+.+
T Consensus 364 ~a~ht~edid~l~~~L~~ 381 (383)
T d1bs0a_ 364 TAAHEMQDIDRLLEVLHG 381 (383)
T ss_dssp CTTCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 999999999999998764
|
| >d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 5-aminolevulinate synthase species: Rhodobacter capsulatus [TaxId: 1061]
Probab=99.93 E-value=1e-24 Score=239.52 Aligned_cols=333 Identities=14% Similarity=0.105 Sum_probs=244.4
Q ss_pred EEecCCcccccccccchhccCCCC-CHHHHHHHHHHHhhcccc----ccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCC
Q psy8199 248 LITFSGKRYLDAISSWWVNLFGHS-NSYINKALKNQLNKLEHV----MLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSD 322 (965)
Q Consensus 248 ~~d~dG~~ylD~~~~~~~~~lGh~-~p~v~~av~~~~~~~~~~----~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~s 322 (965)
..+.++++++||.|+ .+||.. ||++++|..+++++.+.. -...+..+...+|+++|++++ +.+.+++++|
T Consensus 39 ~~~~~~~~~~~FsSn---dYLGL~~~p~v~~a~~~al~~yG~gs~~Sr~~~G~~~~h~~LE~~lA~~~--g~e~all~~s 113 (396)
T d2bwna1 39 RPDGGKQDITVWCGN---DYLGMGQHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLH--QKEAALVFSS 113 (396)
T ss_dssp CTTSCEEEEEECSCS---CTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHT--TCSEEEEESC
T ss_pred ecCCCCeEEEEEEcc---cccCcCCCHHHHHHHHHHHHHhCCCccccccccCCchHHHHHHHHHHHHh--CCCceeeeec
Confidence 345567899999886 678875 999999999999885321 122356788999999999999 5789999999
Q ss_pred hhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhH
Q psy8199 323 GASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANE 402 (965)
Q Consensus 323 GseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (965)
|..||..++...... +++.+|..|...|.+....+.+++.. ...++.
T Consensus 114 G~~An~~~i~~l~~~-------~~~d~i~~D~~~Hasi~~g~~ls~a~------------~~~f~H-------------- 160 (396)
T d2bwna1 114 AYNANDATLSTLRVL-------FPGLIIYSDSLNHASMIEGIKRNAGP------------KRIFRH-------------- 160 (396)
T ss_dssp HHHHHHHHHHHHHHH-------STTCEEEEETTCCHHHHHHHHHSCCC------------EEEECT--------------
T ss_pred chHHHHHHHHHHhcc-------cCCCceeehhhhhhccchhhhccccC------------ceEeec--------------
Confidence 999999999866432 45678888999898866655555421 122211
Q ss_pred HHHHHHHHHHHHHHhC-CCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccc--cccccc
Q psy8199 403 IARCAIFDLEILLKKN-HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK--FFACEH 479 (965)
Q Consensus 403 ~~~~d~~~le~~l~~~-~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~--~~~~~~ 479 (965)
||+++++++++.. +.....|++|. ++++.|.+.| |++|.+||++||+.|++||+|+ ||-.|+ .+..++
T Consensus 161 ---nd~~~l~~l~~~~~~~~~~~iv~eg-vySmdGd~ap----l~~l~~L~~~y~~~L~vDeAHs-~Gv~G~~G~G~~~~ 231 (396)
T d2bwna1 161 ---NDVAHLRELIAADDPAAPKLIAFES-VYSMDGDFGP----IKEICDIAEEFGALTYIDEVHA-VGMYGPRGAGVAER 231 (396)
T ss_dssp ---TCHHHHHHHHHHSCTTSCEEEEEES-BCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTT-TTTSSTTSCCHHHH
T ss_pred ---chHHHhhhHHhhhcccCceeEEEEe-eccCcccccc----cHhHHHHhhhhcceeeecccee-eeeeccccccchhh
Confidence 5778888777654 44567899999 9999999998 9999999999999999999995 776665 234556
Q ss_pred cCCC--ccee--eeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhccc---HHH
Q psy8199 480 AEIW--PDFL--CLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDN---ILQ 552 (965)
Q Consensus 480 ~~~~--pDiv--t~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~---~~~ 552 (965)
+++. .|++ ||||++|+. -|++++++++++.+.. ..+++. .+-+.+|..+++++++++++..+. ..+
T Consensus 232 ~~~~~~~di~~gTlsKa~g~~---Gg~v~~~~~~i~~l~~--~~~~~i--fStalpp~~~aa~~~al~i~~~~~~~~~r~ 304 (396)
T d2bwna1 232 DGLMHRIDIFNGTLAKAYGVF---GGYIAASARMVDAVRS--YAPGFI--FSTSLPPAIAAGAQASIAFLKTAEGQKLRD 304 (396)
T ss_dssp HTCGGGCSEEEEESSSTTCSC---CEEEEECHHHHHHHHH--HCHHHH--TSBCCCHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred cCCceeeeeeeeccccccccc---ccccchhHHHHHHHHh--hcchhh--hcccCcHHHHHHHHHHHHHhhcchHHHHHH
Confidence 6663 4665 799999773 3788899999998876 223343 333457888888999999876432 456
Q ss_pred HHHHHHHHHHHHHHcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHH-HcCcEEeec--------CCEEEE
Q psy8199 553 RISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAAL-KNELLLRPI--------GNTVYL 623 (965)
Q Consensus 553 ~~~~~~~~l~~~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~--------~~~lR~ 623 (965)
+++.+.++++..|.++ ++......+.++.+.+. + ...+..+++.|+ ++||++.+. ...+||
T Consensus 305 ~l~~~~~~~~~~l~~~----g~~~~~~~spIvpv~ig--~----~~~~~~~a~~lL~e~Gi~v~~i~~PtVp~g~~rlRi 374 (396)
T d2bwna1 305 AQQMHAKVLKMRLKAL----GMPIIDHGSHIVPVVIG--D----PVHTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRF 374 (396)
T ss_dssp HHHHHHHHHHHHHHHH----TCCBCCCSSSCEEEECC--C----HHHHHHHHHHHHHHHCEECCEECTTTSCTTCCEEEE
T ss_pred HHHHHHHHHHHHHHhc----CCCcCCCCCCEEEEEeC--C----HHHHHHHHHHHHHhCCEEEEEECCCcCCCCCeeEEE
Confidence 6777888898888775 22222233445555553 3 233446677755 789988642 257999
Q ss_pred eCCcccCHHHHHHHHHhhhcc
Q psy8199 624 MPPYILNKNEIQHMTSAIFQT 644 (965)
Q Consensus 624 ~p~~~~t~~~i~~~~~~l~~~ 644 (965)
+++..+|+++|+++++++++.
T Consensus 375 ~lsa~ht~edId~l~~~L~~i 395 (396)
T d2bwna1 375 TPSPVHDLKQIDGLVHAMDLL 395 (396)
T ss_dssp CCCTTSCHHHHHHHHHHHHHH
T ss_pred EeCccCCHHHHHHHHHHHHHh
Confidence 999999999999999988753
|
| >d1vioa1 d.265.1.3 (A:58-231) Ribosomal small subunit pseudouridine 516 synthase RsuA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Pseudouridine synthase superfamily: Pseudouridine synthase family: Pseudouridine synthase RsuA/RluD domain: Ribosomal small subunit pseudouridine 516 synthase RsuA species: Haemophilus influenzae [TaxId: 727]
Probab=99.92 E-value=4.7e-26 Score=221.93 Aligned_cols=141 Identities=20% Similarity=0.247 Sum_probs=104.0
Q ss_pred ecCcEEEEECCCCCeeeeCCCCCcccHHHHHHHHCCcccCCCCccccccCCCCCceEEEeEeCHHHHHHHHHHHHcCCcC
Q psy8199 34 EDNEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQ 113 (965)
Q Consensus 34 e~~~~lv~nKP~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~RLD~~tsGlll~a~~~~~~~~l~~~~~~~~~~ 113 (965)
|+++|+++|||+|++|+..+.. ..++++.+.... ..++++|||||++||||||||+|+++++++++ +...++
T Consensus 1 e~~~Yi~lNKP~G~~~~~~~~~-~~~v~~~l~~~~-----~~~l~~V~RLD~~TsGLll~t~d~~~~~~l~~--~~~~~~ 72 (174)
T d1vioa1 1 EEGQYFMLNKPQGCVCSNDDGD-YPTIYQFFDYPL-----AGKLHSAGRLDVDTTGLVLLTDDGQWSHRITS--PKHHCE 72 (174)
T ss_dssp CCCCEEEEEECTTCBSSCCC---CCBGGGGSCTTG-----GGGCEESSCCCTTCEEEEEEESCHHHHHHHHC--TTSCCC
T ss_pred CCCEEEEEECCCCEEeCCCCCC-CCcHHHhCcccc-----cCceEEEecCChhHhceEEEeecccccccccc--ccccee
Confidence 6889999999999999865544 557777653222 24688999999999999999999999999988 788899
Q ss_pred eEEEEEEcCccCCCc--eEeeccccCCCCCeeEEEccCCCCcceEEEEEEeEEeeccCCcEEEEEEEeCCCcccHHHHHH
Q psy8199 114 RKYLAMVWGIPKLNG--MINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHM 191 (965)
Q Consensus 114 K~Y~a~v~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~s~~~~~~~tGr~hQIR~~~ 191 (965)
|+|.+.+.+.+.++. .+..++..+.. ......+.++.. +.+.+++.|.|||+||||+||
T Consensus 73 k~y~v~v~~~~~~~~~~~l~~~v~~~g~-----------~~~~~~~~~~~~--------~~~~~~i~l~tGR~hQIR~~~ 133 (174)
T d1vioa1 73 KTYLVTLADPVEENYSAACAEGILLRGE-----------KEPTKPAKLEIL--------DDYNVNLTISEGRYHQVKRMF 133 (174)
T ss_dssp EEEEEEESSCCCTTHHHHHHHCCCCTTC-----------SSCCCCCEEEEC--------SSSEEEEEESCCCTTHHHHHH
T ss_pred eeeeeEEecccchhhHHHHhCCceecCc-----------cccceeeeeccc--------cCcEEEEEEecccchHHHHHH
Confidence 999999999887652 22222211110 111122233332 224689999999999999999
Q ss_pred HHhCCceecC
Q psy8199 192 QWLGHGIVGD 201 (965)
Q Consensus 192 ~~~g~pi~gD 201 (965)
+++||||++-
T Consensus 134 ~~~g~pI~~L 143 (174)
T d1vioa1 134 AALGNKVVGL 143 (174)
T ss_dssp HHTTCCEEEE
T ss_pred HHcCCEEEEE
Confidence 9999999863
|
| >d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermus thermophilus [TaxId: 274]
Probab=99.89 E-value=4.5e-22 Score=221.89 Aligned_cols=334 Identities=12% Similarity=0.065 Sum_probs=222.1
Q ss_pred cCCcccccccccchhccCCCCCHHHHHHHHHHHhhc-cccccCCCCcHHHHHHHHHHHhhcCC--CCCeEEEcCChhHHH
Q psy8199 251 FSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKL-EHVMLSNLTHKPVIKLSEKLSSLTQY--KLGHCFYGSDGASAV 327 (965)
Q Consensus 251 ~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~-~~~~~~~~~~~~~~~la~~l~~~~~~--~~~~v~~~~sGseA~ 327 (965)
.+|+++||+..|.. .|. .+|+|.+|+.+++++. ..|....+..+.++.+++.+.+..+. +.+++++|+|+++|+
T Consensus 28 ~~G~~vi~l~~g~p--~~~-~p~~i~~a~~~~~~~~~~~Y~~~~G~~~lR~~ia~~~~~~~~~~~~~~~i~it~G~~~al 104 (382)
T d1b5pa_ 28 RQGVDLVALTAGEP--DFD-TPEHVKEAARRALAQGKTKYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQAL 104 (382)
T ss_dssp HTTCCCEECCCSSC--SSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHH
T ss_pred hCCCCeEECCCCCC--CCC-CCHHHHHHHHHHHhcCCcCCCCCCCCHHHHHHHHhhhhhhcccccccccceecCCHHHHH
Confidence 56889999988743 233 4789999999988763 34544556677888888888776643 457999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCC-CCCCCCCCChhHHHHH
Q psy8199 328 EVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPD-SRNINKGNSANEIARC 406 (965)
Q Consensus 328 ~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 406 (965)
..+++.... +++.|++.+++|+++.......+. .+..+|... .... .
T Consensus 105 ~~~~~~l~~--------~gd~vl~~~P~y~~~~~~~~~~g~-------------~~~~v~~~~~~~~~-----------~ 152 (382)
T d1b5pa_ 105 FNLFQAILD--------PGDEVIVLSPYWVSYPEMVRFAGG-------------VVVEVETLPEEGFV-----------P 152 (382)
T ss_dssp HHHHHHHCC--------TTCEEEEEESCCTHHHHHHHHTTC-------------EEEEEECCGGGTTC-----------C
T ss_pred HHHHHHhCC--------CCCEEEECCCCcHHHHHHHHHhcC-------------eEEEEecccccccC-----------C
Confidence 999987743 468899999999988443333222 223333211 1111 2
Q ss_pred HHHHHHHHHHhCCCcEE-EEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcc
Q psy8199 407 AIFDLEILLKKNHNKIA-AIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPD 485 (965)
Q Consensus 407 d~~~le~~l~~~~~~~a-aii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pD 485 (965)
|++++++++. +++. .++++| +|++|.+. +.+.+++|.++|++||+++|.||+|..+...|........ ...+
T Consensus 153 d~~~l~~~~~---~~~~~i~~~~P--~NPTG~~~-s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~-~~~~ 225 (382)
T d1b5pa_ 153 DPERVRRAIT---PRTKALVVNSP--NNPTGAVY-PKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRV-APEH 225 (382)
T ss_dssp CHHHHHTTCC---TTEEEEEEESS--CTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGT-CTTT
T ss_pred CHHHHHHhCC---CCCeEEEECCC--CCCcchhC-CHHHHHHHHHHHHHcCeEEEEEccccceecCCCCCCHHHc-CCCC
Confidence 6777776663 3444 455555 99999775 7888999999999999999999999988655654322211 1123
Q ss_pred ee---eeccccC-CCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHH-hccc----HHHHHHH
Q psy8199 486 FL---CLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIF-NKDN----ILQRISQ 556 (965)
Q Consensus 486 iv---t~sK~l~-gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~-~~~~----~~~~~~~ 556 (965)
++ +|||.++ .| +++|++++++++++.+.. .....+.+.+.+.+.++.+++... .... ..+..+.
T Consensus 226 ~i~~~s~SK~~~~~G-lR~G~~~~~~~~i~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (382)
T d1b5pa_ 226 TLTVNGAAKAFAMTG-WRIGYACGPKEVIKAMAS------VSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRR 298 (382)
T ss_dssp EEEEEESTTTTTCGG-GCCEEEECCHHHHHHHHH------HHHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred EEEEecchhhccCcH-hheEEEEECHHHHHHHHH------HHHhcccCcccccccccccccccccchhHHHHHHHHHHHh
Confidence 33 5899886 45 899999999999887754 223344555666666665555321 1122 2333444
Q ss_pred HHHHHHHHHHcccCCCceeeeeceeE-EEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec-----CCEEEEeCCcccC
Q psy8199 557 DMKKITKALTSLITHPKIINFRQKGM-IWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-----GNTVYLMPPYILN 630 (965)
Q Consensus 557 ~~~~l~~~L~~l~~~~~i~~v~g~G~-~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-----~~~lR~~p~~~~t 630 (965)
+.+.+.+.+... ++..+.++|. ++++++. .. ......+.+.|.++||++.|+ .+++|++ +..+
T Consensus 299 ~~~~~~~~l~~~----g~~~~~p~gg~~~~~~~~-~~----~~~~~~~~~~l~e~gV~v~PG~~F~~~~~iRis--~~~~ 367 (382)
T d1b5pa_ 299 RRDLLLEGLTAL----GLKAVRPSGAFYVLMDTS-PI----APDEVRAAERLLEAGVAVVPGTDFAAFGHVRLS--YATS 367 (382)
T ss_dssp HHHHHHHHHHHH----TCCBCCCSBTTEEEEECT-TT----CSSHHHHHHHHHHTTEECEESGGGTCTTEEEEE--CCSC
T ss_pred hhhHHHHHHhhc----CCeEecCCceEEEeEeCC-CC----CCCHHHHHHHHHHCCEEEEeCcccCCCCeEEEE--EcCC
Confidence 444555555443 3445556655 4555553 11 111345678888999999984 2799999 5678
Q ss_pred HHHHHHHHHhhhcc
Q psy8199 631 KNEIQHMTSAIFQT 644 (965)
Q Consensus 631 ~~~i~~~~~~l~~~ 644 (965)
+++++++++++.++
T Consensus 368 ~e~l~~al~rl~~~ 381 (382)
T d1b5pa_ 368 EENLRKALERFARV 381 (382)
T ss_dssp HHHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998765
|
| >d1kska4 d.265.1.3 (A:60-231) Ribosomal small subunit pseudouridine 516 synthase RsuA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Pseudouridine synthase superfamily: Pseudouridine synthase family: Pseudouridine synthase RsuA/RluD domain: Ribosomal small subunit pseudouridine 516 synthase RsuA species: Escherichia coli [TaxId: 562]
Probab=99.88 E-value=6.2e-24 Score=205.31 Aligned_cols=137 Identities=19% Similarity=0.217 Sum_probs=101.8
Q ss_pred cEEEEECCCCCeeeeCCCCCcccHHHHHHHHCCcccCCCCccccccCCCCCceEEEeEeCHHHHHHHHHHHHcCCcCeEE
Q psy8199 37 EIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRKY 116 (965)
Q Consensus 37 ~~lv~nKP~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~RLD~~tsGlll~a~~~~~~~~l~~~~~~~~~~K~Y 116 (965)
.|+++|||+|+.|+..+.. ..++++.+.... ..++++|||||++||||||||+|++++++|++ +...++|+|
T Consensus 2 ~yi~lNKP~G~l~s~~~~~-~~~~~~~l~~~~-----~~~l~~vgRLD~~tsGLlL~tndg~~~~~l~~--~~~~i~k~Y 73 (172)
T d1kska4 2 RYFMLNKPQGYVCSTDDPD-HPTVLYFLDEPV-----AWKLHAAGRLDIDTTGLVLMTDDGQWSHRITS--PRHHCEKTY 73 (172)
T ss_dssp CEEEEEECTTCBSSSSCSS-SCBGGGGCCCTT-----GGGCEESSCCCTTCEEEEEEESCHHHHHHHHC--TTSCCCEEE
T ss_pred EEEEEECCCCEEECCcCCC-CCcEEEecCccc-----cCcEEEeecCCccccccEEEecccceeeeecc--ccccccEEE
Confidence 5899999999999876654 346665543221 24689999999999999999999999999999 788899999
Q ss_pred EEEEcCccCCCc--eEeeccccCCCCCeeEEEccCCCCcceEEEEEEeEEeeccCCcEEEEEEEeCCCcccHHHHHHHHh
Q psy8199 117 LAMVWGIPKLNG--MINAAIMRNPHNRIKMTVSKNFNAKPALTYYERLATGIINKKHISLIRCNLKTGRTHQIRVHMQWL 194 (965)
Q Consensus 117 ~a~v~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~s~~~~~~~tGr~hQIR~~~~~~ 194 (965)
+|.+.|.++.+. .+..++..+ ++...+.+..+.. .+.++++|++.|||+||||+||+++
T Consensus 74 ~v~v~~~i~~~~~~~l~~gv~i~--------------~~~~~~~~~~v~~-----~~~~~l~i~l~~Gr~~qIR~~~~~l 134 (172)
T d1kska4 74 LVTLESPVADDTAEQFAKGVQLH--------------NEKDLTKPAVLEV-----ITPTQVRLTISEGRYHQVKRMFAAV 134 (172)
T ss_dssp EEEESSCCCTTHHHHHHHCCCCT--------------TCSSCCCCCEEEE-----EETTEEEEEESCCCTTHHHHHHHHT
T ss_pred EEEEeccCCHHHHHHhhcceEEc--------------CccccccceEEee-----ccCcEEEEEEecCccHHHHHHHHHc
Confidence 999999887653 222222221 1222222222222 1225699999999999999999999
Q ss_pred CCceec
Q psy8199 195 GHGIVG 200 (965)
Q Consensus 195 g~pi~g 200 (965)
||||+.
T Consensus 135 g~~V~~ 140 (172)
T d1kska4 135 GNHVVE 140 (172)
T ss_dssp TCCEEE
T ss_pred CCEEeE
Confidence 999973
|
| >d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Proteus vulgaris [TaxId: 585]
Probab=99.88 E-value=2.3e-22 Score=230.53 Aligned_cols=364 Identities=15% Similarity=0.080 Sum_probs=219.1
Q ss_pred cCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHH
Q psy8199 251 FSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVA 330 (965)
Q Consensus 251 ~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~A 330 (965)
..|+.+||+.+.++....+| ...++ +..+. .....++...+|++++++++ +.++++|++|||+|++.|
T Consensus 39 ~~~~~~id~~sd~~t~~~~~---~~~a~----~~~gd---~~y~~~~~~~~le~~~a~l~--g~~~~~~~~sGt~A~~~a 106 (465)
T d1ax4a_ 39 PSSAVYIDLLTDSGTNAMSD---HQWAA----MITGD---EAYAGSRNYYDLKDKAKELF--NYDYIIPAHQGRGAENIL 106 (465)
T ss_dssp CGGGCSEECSCSSSCCCEEH---HHHHH----HHTCC---CCSSSCHHHHHHHHHHHHHH--CCCEEEEESSHHHHHHHH
T ss_pred CccCeeeecccccchhhhhH---HHHHH----Hhhhh---hhhccChHHHHHHHHHHHHH--CCCEEEECCCcHHHHHHH
Confidence 35678999998877544432 22222 22221 11234677789999999999 579999999999999999
Q ss_pred HHHHHHHHHhcCCCCceEEEEEcCCccCCcccccccc-CCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHH
Q psy8199 331 LKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVT-NIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIF 409 (965)
Q Consensus 331 l~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 409 (965)
++++++++...+..+...++ +.||+.+..+.... |.... . ........+.+.+... ...|++
T Consensus 107 ~~~~~~~g~~~~~~~~~~i~---~~~h~~t~~~~~~~~g~~~~-~--~~~~~~~~~~~~~~~~-----------~~~d~~ 169 (465)
T d1ax4a_ 107 FPVLLKYKQKEGKAKNPVFI---SNFHFDTTAAHVELNGCKAI-N--IVTEKAFDSETYDDWK-----------GDFDIK 169 (465)
T ss_dssp HHHHHHHHHHTTCCSSCEEE---ESSCCHHHHHHHHHTTCEEE-E--CBCGGGGCTTSCCTTT-----------TCBCHH
T ss_pred HHHHHHHHHhcCCCCCeEEe---ccchhhhhHHHHHHcCCeee-c--ccccccCCCCCCCCcc-----------CccCHH
Confidence 99999988777765555433 35777654443222 21100 0 0000000000111001 113788
Q ss_pred HHHHHHHhC-CCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccC------CCcccccccccccCC
Q psy8199 410 DLEILLKKN-HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVG------CGRTGKFFACEHAEI 482 (965)
Q Consensus 410 ~le~~l~~~-~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg------~gr~G~~~~~~~~~~ 482 (965)
+|+++|++. .+.++++++++ +++++|..+++.+++++|+++|++||++||+||+++. .++.+.++..+..++
T Consensus 170 ~l~~~i~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~l~~i~~~~~~~g~~l~~D~~~~~~~~~~~~~~~~~~~~~~~~~i 248 (465)
T d1ax4a_ 170 KLKENIAQHGADNIVAIVSTV-TCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEV 248 (465)
T ss_dssp HHHHHHHHHCGGGEEEEEEES-SBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTCCHHHH
T ss_pred HHHHHHHhhccccccceeecc-ccccCceecCCHHHHHHHHHHHHHcCCEEEEECcchhhhhcccccccccccccchhhh
Confidence 999999765 45688899999 8999999999999999999999999999999999872 334444444443333
Q ss_pred C------cceeeeccccCCCcccceeeeecHH--HHHhhhccCCcccccccCCCCCCHHHHHHHH-HHHHHHhcccHHHH
Q psy8199 483 W------PDFLCLSKGITGGYLPLSLVMTTDK--IYNSIYYKNNINIFLHSHSYSGNPLACCAAL-ATLEIFNKDNILQR 553 (965)
Q Consensus 483 ~------pDivt~sK~l~gG~~pig~v~~~~~--i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~-a~L~~~~~~~~~~~ 553 (965)
. .|++++||+.+++.+..|+++.++. +...... ......+..++.+....+.++. ..+.....++..++
T Consensus 249 ~~~~~~~~d~~s~s~~k~~~~~~~g~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~e~~~~~~~~~ 326 (465)
T d1ax4a_ 249 IFDMYKYADALTMSAKKDPLLNIGGLVAIRDNEEIFTLARQ--RCVPMEGFVTYGGLAGRDMAAMVQGLEEGTEEEYLHY 326 (465)
T ss_dssp HHHHGGGCSEEEEETTSTTCCSSCEEEEESSCHHHHHHHHH--HHHHHTCSTTTTTCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccccccccceeEeecccCcccccceeEeecchHHHHHhhhc--cccccccCCCcchhhHHHHHHHhhhhHHhhhHHHHHH
Confidence 3 4677888877776445556666542 2222211 0011233445544444333333 33443344556777
Q ss_pred HHHHHHHHHHHHHcccCCCceeeeeceeEEEEEEEeecCccchhh--HHHHHHHHHHHcCcEEee---------------
Q psy8199 554 ISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIET--FSKKFFVAALKNELLLRP--------------- 616 (965)
Q Consensus 554 ~~~~~~~l~~~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~--~~~~~~~~l~~~Gi~~~~--------------- 616 (965)
..++.++|.+.|++. ..+.+....+.+.++..... .+...... ........+.+.||....
T Consensus 327 ~~~~~~~l~~~L~~~-g~~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ll~~~GI~~~~~~~~~~~~~~~~g~~ 404 (465)
T d1ax4a_ 327 RIGQVKYLGDRLREA-GIPIQYPTGGHAVFVDCKKL-VPQIPGDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQ 404 (465)
T ss_dssp HHHHHHHHHHHHHHT-TCCBCSSCCSSEEEEESTTT-CTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSB
T ss_pred HHHHHHHHHHHHHhh-cCccccCCCcceeeeehhhh-cCCCccccchhHHHHHHHHHhcCceeccccccccccccccCCc
Confidence 778889999999875 22333333333433322211 01111111 122344556678876432
Q ss_pred ---cCCEEEEe-CCcccCHHHHHHHHHhhhcccccH
Q psy8199 617 ---IGNTVYLM-PPYILNKNEIQHMTSAIFQTFNEL 648 (965)
Q Consensus 617 ---~~~~lR~~-p~~~~t~~~i~~~~~~l~~~~~~~ 648 (965)
..+.+||+ |+.++|++++|.+++++.+...+.
T Consensus 405 ~~~~~~~vRlalP~~~~T~eeiD~vv~~l~~v~~~~ 440 (465)
T d1ax4a_ 405 KHADMEFMRLTIARRVYTNDHMDYIADALIGLKEKF 440 (465)
T ss_dssp CCCSCCEEEEECCTTSSCHHHHHHHHHHHHTTHHHH
T ss_pred cCCCCCceEEeCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 12589997 668889999999999998765443
|
| >d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Phormidium lapideum [TaxId: 32060]
Probab=99.87 E-value=1.5e-21 Score=217.79 Aligned_cols=339 Identities=11% Similarity=0.071 Sum_probs=222.7
Q ss_pred cCCcccccccccchhccCCCCCHHHHHHHHHHHhhc-cccccCCCCcHHHHHHHHHHHhhcC--CCCCeEEEcCChhHHH
Q psy8199 251 FSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKL-EHVMLSNLTHKPVIKLSEKLSSLTQ--YKLGHCFYGSDGASAV 327 (965)
Q Consensus 251 ~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~-~~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~~~sGseA~ 327 (965)
.+|+.+||+..|.. .|. .+|.|++|++++++.. ..|....+..+.+..+++.+.+..+ ...++|++|+|+++|+
T Consensus 27 ~~g~~vi~l~~G~p--~~~-~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~~~i~it~G~~~al 103 (388)
T d1j32a_ 27 AEGIDVCSFSAGEP--DFN-TPKHIVEAAKAALEQGKTRYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSI 103 (388)
T ss_dssp TTTCCCEECCCSSC--SSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHH
T ss_pred HCCCCeEECCCCCC--CCC-CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhcccCCCCceEEEcCCHHHHH
Confidence 46889999987743 233 4789999999988764 3354455666778888888877654 3457899999999999
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHH
Q psy8199 328 EVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCA 407 (965)
Q Consensus 328 ~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 407 (965)
..+++.... +++.|++.+++|.++.......++ ..+.++........ .|
T Consensus 104 ~~~~~~~~~--------~gd~Vlv~~P~y~~~~~~~~~~~~-------------~~v~~~~~~~~~~~----------~d 152 (388)
T d1j32a_ 104 FNLMLAMIE--------PGDEVIIPAPFWVSYPEMVKLAEG-------------TPVILPTTVETQFK----------VS 152 (388)
T ss_dssp HHHHHHHCC--------TTCEEEEESSCCTHHHHHHHHTTC-------------EEEEECCCGGGTTC----------CC
T ss_pred HHHHHHHhC--------CCCEEEEcCCCcHHHHHHHHHhcC-------------eEEEEecccccccC----------CC
Confidence 999987643 568899999999887433322222 12233322111100 26
Q ss_pred HHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCc---
Q psy8199 408 IFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWP--- 484 (965)
Q Consensus 408 ~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~p--- 484 (965)
+++|++.+. +...+.++++| +|++|.+. +.+.+++|.++|++||+++|.||+|..+...+..+..- ....|
T Consensus 153 ~~~l~~~~~--~~~~~~~~~~P--~NPTG~~~-~~~~~~~l~~~~~~~~~~iI~De~Y~~~~~~~~~~~s~-~~~~~~~~ 226 (388)
T d1j32a_ 153 PEQIRQAIT--PKTKLLVFNTP--SNPTGMVY-TPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSI-GAASPEAY 226 (388)
T ss_dssp HHHHHHHCC--TTEEEEEEESS--CTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCG-GGSCHHHH
T ss_pred HHHHHHhCC--CCCeEEEECCC--CCCCCccc-chhhhhhhhcccccCCeEEEchhhhhcccccCCCCCCH-HHhCcccc
Confidence 788888775 23344556666 89999876 78889999999999999999999998765444321110 11111
Q ss_pred -ce---eeeccccC-CCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc--ccHHHHHHHH
Q psy8199 485 -DF---LCLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK--DNILQRISQD 557 (965)
Q Consensus 485 -Di---vt~sK~l~-gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~--~~~~~~~~~~ 557 (965)
.+ -+|||.++ .| +++|++++++++++.+.. .....+.+.+..++.++...++...+ ....+.++++
T Consensus 227 ~~~i~~~S~SK~~~~~G-lRvG~~~~~~~~~~~~~~------~~~~~~~~~~~~~q~a~~~~~~~~~~~~~~~~~~~~~~ 299 (388)
T d1j32a_ 227 ERSVVCSGFAKTYAMTG-WRVGFLAGPVPLVKAATK------IQGHSTSNVCTFAQYGAIAAYENSQDCVQEMLAAFAER 299 (388)
T ss_dssp HTEEEEEESTTTTTCTT-TCCEEEECCHHHHHHHHH------HHHTTTCSCCHHHHHHHHHHHHSCSHHHHHHHHHHHHH
T ss_pred cceeEecCChhhhhcch-hHeEEEEECHHHHHHHHH------hhhhccccccHHHHHHHhhcccchHHHHHHHHHHHHHH
Confidence 12 26899886 45 899999999999887765 22234456678888877777753211 1233444455
Q ss_pred HHHHHHHHHcccCCCceeeeeceeEEE-EEEEeecCccchhhHHHHHHHHH-HHcCcEEeec-----CCEEEEeCCcccC
Q psy8199 558 MKKITKALTSLITHPKIINFRQKGMIW-AFDVIIEDPEQIETFSKKFFVAA-LKNELLLRPI-----GNTVYLMPPYILN 630 (965)
Q Consensus 558 ~~~l~~~L~~l~~~~~i~~v~g~G~~~-~i~~~~~~~~~~~~~~~~~~~~l-~~~Gi~~~~~-----~~~lR~~p~~~~t 630 (965)
.+.+.+.|+ +.+++....+.|.++ ++++. ... . ...++++.+ .++||.+.|+ .+++|++ +..+
T Consensus 300 ~~~~~~~l~---~~~g~~~~~p~gg~~l~~~l~-~~~---~-~~~~~~~~ll~~~gV~v~pG~~F~~~~~~Rls--~~~~ 369 (388)
T d1j32a_ 300 RRYMLDALN---AMPGLECPKPDGAFYMFPSIA-KTG---R-SSLDFCSELLDQHQVATVPGAAFGADDCIRLS--YATD 369 (388)
T ss_dssp HHHHHHHHH---TCTTCBCCCCCBTTEECCBCG-GGT---C-CHHHHHHHHHHHHCEECEEGGGGTCTTBEEEE--CCSC
T ss_pred HHHHHHHHH---hCCCCEecCCCceEEEEEECC-CCC---C-CHHHHHHHHHHhCCEEEEeccccCCCCeEEEE--EeCC
Confidence 555555554 345666666676554 44442 111 1 123455555 4679999985 3789999 5678
Q ss_pred HHHHHHHHHhhhcccc
Q psy8199 631 KNEIQHMTSAIFQTFN 646 (965)
Q Consensus 631 ~~~i~~~~~~l~~~~~ 646 (965)
+++++++++++.+.+.
T Consensus 370 ~e~l~~al~rl~~~l~ 385 (388)
T d1j32a_ 370 LDTIKRGMERLEKFLH 385 (388)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8999999988876553
|
| >d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: L-threonine-O-3-phosphate decarboxylase CobD species: Salmonella enterica [TaxId: 28901]
Probab=99.86 E-value=5.2e-21 Score=211.02 Aligned_cols=323 Identities=14% Similarity=0.163 Sum_probs=210.1
Q ss_pred cCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHH
Q psy8199 251 FSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVA 330 (965)
Q Consensus 251 ~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~A 330 (965)
.....+|||.+| ++++| .+|.+.+|+.++++.+..| ++....+|.+.+++.++...++|++++|+++++..+
T Consensus 19 ~~p~~~idls~~--~np~~-~p~~~~~a~~~~~~~~~~Y-----p~~~~~~Lr~aia~~~~v~~~~I~~~~g~~~~~~~~ 90 (355)
T d1lc5a_ 19 ISPDQLLDFSAN--INPLG-MPVSVKRALIDNLDCIERY-----PDADYFHLHQALARHHQVPASWILAGNGETESIFTV 90 (355)
T ss_dssp SCGGGSEECSSC--CCTTC-CCHHHHHHHHHTGGGGGSC-----CCTTCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHH
T ss_pred CChhheEEccCC--CCCCC-CCHHHHHHHHHHHHHhccC-----CCCChHHHHHHHHHHhCCCHHHEEecccHHHHHHHH
Confidence 344578999776 57788 4788999999988776444 222234677888888877788999999888887776
Q ss_pred HHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHH
Q psy8199 331 LKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFD 410 (965)
Q Consensus 331 l~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 410 (965)
+... .++.+++..+.|+.+......... +...+|.+...+.. ..++
T Consensus 91 ~~~~----------~~~~~~v~~p~~~~~~~~~~~~~~-------------~~~~v~~~~~~~~~-----------~~~~ 136 (355)
T d1lc5a_ 91 ASGL----------KPRRAMIVTPGFAEYGRALAQSGC-------------EIRRWSLREADGWQ-----------LTDA 136 (355)
T ss_dssp HHHH----------CCSEEEEEESCCTHHHHHHHHTTC-------------EEEEEECCGGGTTC-----------CCTT
T ss_pred Hhhh----------ccccccccCCccceeccccccccc-------------cceeeeeeccCCcc-----------ceee
Confidence 6544 234455667777666433322222 33444443221111 0122
Q ss_pred HHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCccee---
Q psy8199 411 LEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL--- 487 (965)
Q Consensus 411 le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDiv--- 487 (965)
+++.+ ..++.+|++.+ ++|++|.+. +.+.+++|.++|++|++++|.||+|..|...+..... .....++++
T Consensus 137 ~~~~~---~~~~~~v~l~n-P~NPtG~~~-~~e~l~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~-~~~~~~~~i~~~ 210 (355)
T d1lc5a_ 137 ILEAL---TPDLDCLFLCT-PNNPTGLLP-ERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIP-ALKDNPHIWVLR 210 (355)
T ss_dssp HHHHC---CTTCCEEEEES-SCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGG-GCTTCTTEEEEE
T ss_pred eeecc---ccccceeeeec-ccCcccccc-hhhhhhhhhhhccccccccccccceeeeeeecccccc-cccccccceeec
Confidence 33333 23444444444 499999866 7888999999999999999999999877654432221 122233444
Q ss_pred eeccccC-CCcccceeeeecHHHH-HhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHH
Q psy8199 488 CLSKGIT-GGYLPLSLVMTTDKIY-NSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN-KDNILQRISQDMKKITKA 564 (965)
Q Consensus 488 t~sK~l~-gG~~pig~v~~~~~i~-~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~-~~~~~~~~~~~~~~l~~~ 564 (965)
+|||+++ .| +++|+++++++.+ +.+.. +..++..+.+++.++.++|+... -....+++++..+++.+.
T Consensus 211 S~SK~~~l~G-lR~G~~i~~~~~~~~~~~~--------~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~ 281 (355)
T d1lc5a_ 211 SLTKFYAIPG-LRLGYLVNSDDAAMARMRR--------QQMPWSVNALAALAGEVALQDSAWQQATWHWLREEGARFYQA 281 (355)
T ss_dssp ESTTTTTCTT-TCCEEEECCCHHHHHHHHH--------HSCTTCSCHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccc-ccccceeccchhhhHHHHh--------hcCCccccccccccccccccccchhHHHHHHHHHHHHHHHHH
Confidence 6899876 45 8999999976544 44433 33567788999999888885211 112344555556666666
Q ss_pred HHcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec-------CCEEEEeCCcccCHHHHHHH
Q psy8199 565 LTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-------GNTVYLMPPYILNKNEIQHM 637 (965)
Q Consensus 565 L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-------~~~lR~~p~~~~t~~~i~~~ 637 (965)
|.++ +++...++.|.++.+.+. .+ ..++++.|.++||+++|+ .+++||+. .++++++++
T Consensus 282 l~~~---~~~~~~p~~~~f~~~~~~-~~-------~~~~~~~L~~~gv~vr~~~~f~~~~~~~iRis~---~~~~e~~~l 347 (355)
T d1lc5a_ 282 LCQL---PLLTVYPGRANYLLLRCE-RE-------DIDLQRRLLTQRILIRSCANYPGLDSRYYRVAI---RSAAQNERL 347 (355)
T ss_dssp HHTS---TTEEECCCSSSEEEEEES-CT-------TCCHHHHHHTTTEECEECTTSTTCCTTEEEEEC---CCHHHHHHH
T ss_pred Hhhc---CCcEECCCCCEEEEEECC-CC-------HHHHHHHHHHCCcEEEeCccCCCCCCCEEEEEe---CCHHHHHHH
Confidence 6544 566656677787777764 22 124667889999999873 26999993 378999999
Q ss_pred HHhhhcc
Q psy8199 638 TSAIFQT 644 (965)
Q Consensus 638 ~~~l~~~ 644 (965)
++++++.
T Consensus 348 i~aL~~i 354 (355)
T d1lc5a_ 348 LAALRNV 354 (355)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 8887754
|
| >d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.85 E-value=6.1e-21 Score=213.31 Aligned_cols=335 Identities=14% Similarity=0.093 Sum_probs=216.8
Q ss_pred CcccccccccchhccCCCCCHHHHHHHHHHHhhc-cccccCCCCcHHHHHHHHHHHhhcC---CCCCeEEEcCChhHHHH
Q psy8199 253 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKL-EHVMLSNLTHKPVIKLSEKLSSLTQ---YKLGHCFYGSDGASAVE 328 (965)
Q Consensus 253 G~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~-~~~~~~~~~~~~~~~la~~l~~~~~---~~~~~v~~~~sGseA~~ 328 (965)
++.+||+..|.. .++ .++.|.+++++++++. ..|....+..+.++.+++.+.+..+ ...++|++++|+++|+.
T Consensus 24 ~~dvi~l~~g~p--~~~-~p~~v~~~~~~a~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~i~~t~G~~~~l~ 100 (388)
T d1gdea_ 24 MKDVISLGIGEP--DFD-TPQHIKEYAKEALDKGLTHYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFL 100 (388)
T ss_dssp CTTCEECCCCSC--CSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHH
T ss_pred CCCeEECCCCCC--CCC-CCHHHHHHHHHHHhcCccCCCCCcCCHHHHHHHHHHHHhhccccCCChheeeeccCcchHHH
Confidence 456889877743 344 4788999999998763 3455455667778888888876443 23458999999999999
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCC-CCCCCCCCChhHHHHHH
Q psy8199 329 VALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPD-SRNINKGNSANEIARCA 407 (965)
Q Consensus 329 ~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d 407 (965)
.++..... +++.|++.+++|.++...+...+. .+..+|... +... .|
T Consensus 101 ~~~~~l~~--------~gd~vlv~~P~y~~~~~~~~~~g~-------------~~~~~~~~~~~~~~-----------~d 148 (388)
T d1gdea_ 101 MGLSAFLK--------DGEEVLIPTPAFVSYAPAVILAGG-------------KPVEVPTYEEDEFR-----------LN 148 (388)
T ss_dssp HHHTTTCC--------TTCEEEEEESCCTTHHHHHHHHTC-------------EEEEEECCGGGTTC-----------CC
T ss_pred HHHHHhcC--------CCCEEEECCCCcHHHHHHHHHcCC-------------EEEEeecccccCCC-----------CC
Confidence 99886643 568899999999887544433332 233333321 1111 26
Q ss_pred HHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccc-ccccccc-CCCcc
Q psy8199 408 IFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK-FFACEHA-EIWPD 485 (965)
Q Consensus 408 ~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~-~~~~~~~-~~~pD 485 (965)
+++|++.+.+ ...+.++++| +|++|.+. +++.+++|.++|++||+++|.||+|..|...+. ......+ +..+.
T Consensus 149 ~~~l~~~~~~--~~~~i~~~~P--~NPtG~~~-s~~~~~~l~~~a~~~~~~vi~De~y~~~~~~~~~~~~~~~~~~~~~~ 223 (388)
T d1gdea_ 149 VDELKKYVTD--KTRALIINSP--CNPTGAVL-TKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFER 223 (388)
T ss_dssp HHHHHHHCCT--TEEEEEEESS--CTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGG
T ss_pred HHHHHHhCcc--CCeEEEECCC--cCCCCCcC-CHHHHHHHHHHHHHcCCEEEEEcCChhhhhccCCCCChhhccCCCCe
Confidence 7888887752 2334455555 89999876 788899999999999999999999988754443 2222222 22223
Q ss_pred ee---eeccccC-CCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc----ccHHHHHHHH
Q psy8199 486 FL---CLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK----DNILQRISQD 557 (965)
Q Consensus 486 iv---t~sK~l~-gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~----~~~~~~~~~~ 557 (965)
++ +|||.++ .| +++|++++++++++.+.. .....+.+.+.+.+.++.++|+.... .......+++
T Consensus 224 ~i~~~S~SK~~~~~G-lR~G~ii~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 296 (388)
T d1gdea_ 224 TITVNGFSKTFAMTG-WRLGFVAAPSWIIERMVK------FQMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRR 296 (388)
T ss_dssp EEEEEESTTTTTCGG-GCCEEEECCHHHHHHHHH------HHHTTTCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred EEEEeCChhhccCcc-ccEEEEEeeccchhhhhh------ccccccccccccchhhHHHHHhhccchhHHHHHHHHHHHh
Confidence 33 6899886 45 899999999988877765 22345556677777777776632111 1123333344
Q ss_pred HHHHHHHHHcccCCCceeeeeceeE-EEEEEEeecCccchhhHHHHHHHHH-HHcCcEEeec-------CCEEEEeCCcc
Q psy8199 558 MKKITKALTSLITHPKIINFRQKGM-IWAFDVIIEDPEQIETFSKKFFVAA-LKNELLLRPI-------GNTVYLMPPYI 628 (965)
Q Consensus 558 ~~~l~~~L~~l~~~~~i~~v~g~G~-~~~i~~~~~~~~~~~~~~~~~~~~l-~~~Gi~~~~~-------~~~lR~~p~~~ 628 (965)
...+.+.|... ++..+.+.|. ++++++. ..+ ....++++.+ .+.||.+.|+ .+++|++ +.
T Consensus 297 ~~~~~~~l~~~----~~~~~~p~gg~fl~~~l~-~~~----~~~~~~~~~ll~e~gV~v~PG~~F~~~~~~~iRis--~~ 365 (388)
T d1gdea_ 297 RKLVWKRLNEM----GLPTVKPKGAFYIFPRIR-DTG----LTSKKFSELMLKEARVAVVPGSAFGKAGEGYVRIS--YA 365 (388)
T ss_dssp HHHHHHHHHHT----TCCCCCCCBTTEECCBCG-GGT----CCHHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEE--CC
T ss_pred hhhhhhhhhhc----cccccCCCceEEEEEECC-CCC----CCHHHHHHHHHHhCCEEEEechhhCCCCCCEEEEE--ec
Confidence 44444444432 3344555654 5555443 111 1133555655 4679999874 3689999 56
Q ss_pred cCHHHHHHHHHhhhccc
Q psy8199 629 LNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 629 ~t~~~i~~~~~~l~~~~ 645 (965)
.++++++++++++.+++
T Consensus 366 ~~~e~l~~al~rL~~~l 382 (388)
T d1gdea_ 366 TAYEKLEEAMDRMERVL 382 (388)
T ss_dssp SCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 78889999998887654
|
| >d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=99.84 E-value=6.9e-21 Score=208.52 Aligned_cols=337 Identities=10% Similarity=-0.002 Sum_probs=208.2
Q ss_pred cccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHH
Q psy8199 256 YLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSF 335 (965)
Q Consensus 256 ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~ 335 (965)
+|||.+-+...+ +|++++|+.++....+ ..+..+...+|+++++++++ .++++|++|||+|++.|+++++
T Consensus 1 ~~~~~~~~~t~p----~p~v~~A~~~a~~g~~----~yg~~p~~~~le~~lA~~~G--~~~~~~~~sGt~A~~~al~a~~ 70 (343)
T d1m6sa_ 1 MIDLRSDTVTKP----TEEMRKAMAQAEVGDD----VYGEDPTINELERLAAETFG--KEAALFVPSGTMGNQVSIMAHT 70 (343)
T ss_dssp CEECSCGGGCCC----CHHHHHHHHTCCCCCG----GGTCCHHHHHHHHHHHHHTT--CSEEEEESCHHHHHHHHHHHHC
T ss_pred CcccccccCCCC----CHHHHHHHHhhhcCCc----ccCCCHHHHHHHHHHHHHHC--CCeEEEeCCHHHHHHHHHHHHh
Confidence 367766554333 7999999976532211 23456788999999999994 6899999999999999999875
Q ss_pred HHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHH
Q psy8199 336 HYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILL 415 (965)
Q Consensus 336 ~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l 415 (965)
. .++.++.....++............ ......++.+. .. .|++.+++.+
T Consensus 71 ~--------~g~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~--~~-----------~~~~~~~~~i 119 (343)
T d1m6sa_ 71 Q--------RGDEVILEADSHIFWYEVGAMAVLS----------GVMPHPVPGKN--GA-----------MDPDDVRKAI 119 (343)
T ss_dssp C--------TTCEEEEETTCHHHHSSTTHHHHHT----------CCEEEEECEET--TE-----------ECHHHHHHHS
T ss_pred c--------cCCceeccccccceeeecccccccc----------cceeecccccc--Cc-----------cCHHHHHHhh
Confidence 4 4566666665554332211111110 00111121111 10 2566667666
Q ss_pred HhC---CCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcceeeeccc
Q psy8199 416 KKN---HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKG 492 (965)
Q Consensus 416 ~~~---~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~sK~ 492 (965)
... ...+..+++++ ..++.|...++.+++++|+++|++||+++++||+++++...+..+.........+..+++|.
T Consensus 120 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~i~~~~~~~g~~~~~D~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (343)
T d1m6sa_ 120 RPRNIHFPRTSLIAIEN-THNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAGYADSVMFCLS 198 (343)
T ss_dssp CCSCTTSCCEEEEEEES-SBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHHHHHTCSEEEEESS
T ss_pred hhhhccccccccccccc-ccccCCceecCHHHHHHHHHHHHhcCeEEEeccccccccccccccchhhhcccccccccccc
Confidence 543 23466666666 56666666778999999999999999999999999876443333333222333455666665
Q ss_pred cCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcccCCC
Q psy8199 493 ITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHP 572 (965)
Q Consensus 493 l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~ 572 (965)
.+.|+.+.+++.+..+.+...... + ...+.+....... ++.................++..++.+.+.++....
T Consensus 199 ~~~~g~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (343)
T d1m6sa_ 199 KGLCAPVGSVVVGDRDFIERARKA---R-KMLGGGMRQAGVL--AAAGIIALTKMVDRLKEDHENARFLALKLKEIGYSV 272 (343)
T ss_dssp STTCCSSCEEEEECHHHHHHHHHH---H-HHHTCCCSSTHHH--HHHHHHHHHHSSTTHHHHHHHHHHHHHHHHHHTCBC
T ss_pred ccccccccccccccHHHHhhhHhh---C-cccccccchhHHH--HHhhhhhhhhhHHHHHHHHHHHHHhhhHHHHhccCc
Confidence 554446778888887776555431 0 1122333332222 222222223334456666677777777776652211
Q ss_pred ceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecC-CEEEEeCCcccCHHHHHHHHHhhhccccc
Q psy8199 573 KIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG-NTVYLMPPYILNKNEIQHMTSAIFQTFNE 647 (965)
Q Consensus 573 ~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~-~~lR~~p~~~~t~~~i~~~~~~l~~~~~~ 647 (965)
. .......++.+.+. .. ...+.++.+.|+++||++++.+ +++||++++.+|+++|+++++++++.+.+
T Consensus 273 ~--~~~~~~~~v~~~~~-~~----~~~a~~l~~~L~~~Gi~v~~~~~~~iRi~~~~~~t~edid~~v~~l~~v~~~ 341 (343)
T d1m6sa_ 273 N--PEDVKTNMVILRTD-NL----KVNAHGFIEALRNSGVLANAVSDTEIRLVTHKDVSRNDIEEALNIFEKLFRK 341 (343)
T ss_dssp C--GGGCCSSEEEEECT-TS----SSCHHHHHHHHHHHTEECEEEETTEEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred c--CCCCCceEEEEEeC-CC----cccHHHHHHHHHHCCCEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 1 11223456666553 11 1124578899999999998754 79999999999999999999999876544
|
| >d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative alanine aminotransferase species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.84 E-value=3.3e-20 Score=207.25 Aligned_cols=345 Identities=14% Similarity=0.054 Sum_probs=218.3
Q ss_pred cCCcccccccccchhccCCC-CCHHHHHHHHHHHhhc-cccccCCCCcHHHHHHHHHHHhhcCC--CCCeEEEcCChhHH
Q psy8199 251 FSGKRYLDAISSWWVNLFGH-SNSYINKALKNQLNKL-EHVMLSNLTHKPVIKLSEKLSSLTQY--KLGHCFYGSDGASA 326 (965)
Q Consensus 251 ~dG~~ylD~~~~~~~~~lGh-~~p~v~~av~~~~~~~-~~~~~~~~~~~~~~~la~~l~~~~~~--~~~~v~~~~sGseA 326 (965)
.+|+++||+..|.... ..+ .++.+.+|+.++++.. .+|....+..+.++.+++.+.+..+. ..+++++++|++++
T Consensus 27 ~~G~~vi~l~~G~P~~-~df~~p~~i~~a~~~a~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~i~i~~G~~~~ 105 (395)
T d1xi9a_ 27 KKGIKVIRLNIGDPVK-FDFQPPEHMKEAYCKAIKEGHNYYGDSEGLPELRKAIVEREKRKNGVDITPDDVRVTAAVTEA 105 (395)
T ss_dssp HTTCCCEECCCCCGGG-TTCCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHH
T ss_pred HCCCCeEECCCCCCCC-CCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhhhhcccccccccccccccccchh
Confidence 4688999998875422 233 4778999999998764 34555566777888899988887653 45689999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCC-CCCCCCCCChhHHHH
Q psy8199 327 VEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPD-SRNINKGNSANEIAR 405 (965)
Q Consensus 327 ~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 405 (965)
+..+++.... +++.|++.+++|+.+...+...++. ++.+|... ....
T Consensus 106 ~~~~~~~~~~--------~Gd~vlv~~P~y~~~~~~~~~~g~~-------------~v~v~~~~~~~~~----------- 153 (395)
T d1xi9a_ 106 LQLIFGALLD--------PGDEILVPGPSYPPYTGLVKFYGGK-------------PVEYRTIEEEDWQ----------- 153 (395)
T ss_dssp HHHHHHHHCC--------TTCEEEEEESCCHHHHHHHHHTTCE-------------EEEEEEEGGGTSE-----------
T ss_pred hhhhhhhhcC--------CCCEEEEcCCccccchhhhhhcCCE-------------EEEEecccccccc-----------
Confidence 9998887643 5688999999998875544444331 22222111 0111
Q ss_pred HHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcc
Q psy8199 406 CAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPD 485 (965)
Q Consensus 406 ~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pD 485 (965)
.|++++++.+. ....+.++++| +|++|.+. +.+.+++|.++|++||+++|.||+|..+...+.........-...
T Consensus 154 ~d~~~~~~~~~--~~~~~v~l~~P--~NPTG~~~-s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~ 228 (395)
T d1xi9a_ 154 PDIDDIRKKIT--DRTKAIAVINP--NNPTGALY-DKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLTKDVP 228 (395)
T ss_dssp ECHHHHHHHCC--TTEEEEEEESS--CTTTCCCC-CHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHCSSSC
T ss_pred chHHHHHHhhc--ccccEEEecCC--CCCccchh-hHHHHHHHHhhhhhcCeeEEeccccccccccccccchhhcCCCCC
Confidence 25677777664 22334555555 89999876 788899999999999999999999987644443222222222233
Q ss_pred ee---eeccccCCCcccceeeeec--HHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc--ccHHHHHHHHH
Q psy8199 486 FL---CLSKGITGGYLPLSLVMTT--DKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK--DNILQRISQDM 558 (965)
Q Consensus 486 iv---t~sK~l~gG~~pig~v~~~--~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~--~~~~~~~~~~~ 558 (965)
++ +|||.++..++++|++++. ...+..+... .......+...+.+++.++..+|+...+ ....+.++++.
T Consensus 229 vi~~~S~SK~~~~~GlRvG~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~ 305 (395)
T d1xi9a_ 229 VIVMNGLSKVYFATGWRLGYMYFVDPENKLSEVREA---IDRLARIRLCPNTPAQFAAIAGLTGPMDYLKEYMKKLKERR 305 (395)
T ss_dssp EEEEEESTTTTCCGGGCCEEEEEECTTCTTHHHHHH---HHHHHHHTCCSCSHHHHHHHHHHHSCCHHHHHHHHHHHHHH
T ss_pred EEEEeCcchhcccchhhcEeeEecCHHHHHHHHHHH---HHHhhcCCCCcCHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 44 6899876422899987643 2222222110 0011223455677788888777752111 12344455666
Q ss_pred HHHHHHHHcccCCCceeeeecee-EEEEEEEeecCccchhhHHHHHHH-HHHHcCcEEeec-------CCEEEEeCCccc
Q psy8199 559 KKITKALTSLITHPKIINFRQKG-MIWAFDVIIEDPEQIETFSKKFFV-AALKNELLLRPI-------GNTVYLMPPYIL 629 (965)
Q Consensus 559 ~~l~~~L~~l~~~~~i~~v~g~G-~~~~i~~~~~~~~~~~~~~~~~~~-~l~~~Gi~~~~~-------~~~lR~~p~~~~ 629 (965)
+.+.+.|+++ +.+....+.| .++++++....... ..++.. .+.+.||++.|+ .+++||+ +..
T Consensus 306 ~~l~~~L~~~---~~~~~~~p~gg~~~~~~l~~~~~~~----~~~~~~~ll~~~gV~v~PG~~Fg~~~~~~~Ris--~~~ 376 (395)
T d1xi9a_ 306 DYIYKRLNEI---PGISTTKPQGAFYIFPKIEVGPWKN----DKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAV--FLP 376 (395)
T ss_dssp HHHHHHHHTS---TTEECCCCCBSSEECCEECSCSCSS----HHHHHHHHHHHHCEECEEGGGGCGGGTTBEEEE--CCS
T ss_pred HHHHHHHHhC---CCceecCCCeeEEEeEECCCCCCCC----HHHHHHHHHHhCCEEEEcChhhCCCCCCEEEEE--ecC
Confidence 6666666543 5555555665 45555664111011 223444 455789999874 2689999 667
Q ss_pred CHHHHHHHHHhhhccc
Q psy8199 630 NKNEIQHMTSAIFQTF 645 (965)
Q Consensus 630 t~~~i~~~~~~l~~~~ 645 (965)
+.++++++++++.+.+
T Consensus 377 ~~e~l~eal~rl~~~l 392 (395)
T d1xi9a_ 377 PIEILEEAMDRFEKFM 392 (395)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 8999999998887654
|
| >d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Phenylserine aldolase PSALD species: Pseudomonas putida [TaxId: 303]
Probab=99.84 E-value=2e-20 Score=204.80 Aligned_cols=329 Identities=11% Similarity=0.049 Sum_probs=190.8
Q ss_pred ccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHH
Q psy8199 255 RYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMS 334 (965)
Q Consensus 255 ~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a 334 (965)
.+|||.|. + .++.||+|++|++++... +. ...+.++...++.++++++++. ...++|++|||+||+.|++.+
T Consensus 3 ~~~~f~s~---n-~~g~~P~v~~A~~~a~~~--~~-~~~~~~~~~~~l~~~la~~~g~-~~~v~f~~sGt~An~~a~~~~ 74 (345)
T d1v72a1 3 PALGFSSD---N-IAGASPEVAQALVKHSSG--QA-GPYGTDELTAQVKRKFCEIFER-DVEVFLVPTGTAANALCLSAM 74 (345)
T ss_dssp CCCBCSCG---G-GCCCCHHHHHHHHHTTSS--CC-CSTTCSHHHHHHHHHHHHHHTS-CCEEEEESCHHHHHHHHHHTS
T ss_pred CCcCcCCC---C-CCCCCHHHHHHHHHHhcc--Cc-cccCCCHHHHHHHHHHHHHHCC-CcEEEECCchHHHHHHHHHHH
Confidence 47899863 3 444799999999876433 21 2335778889999999999963 347999999999999999987
Q ss_pred HHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHH
Q psy8199 335 FHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEIL 414 (965)
Q Consensus 335 ~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~ 414 (965)
+. ..+.++.. ...|.+......... ........++.. .... .++++++..
T Consensus 75 ~~--------~~~~~~~~-~~~~~~~~~~~~~~~---------~~~~~~~~~~~~-~~~~-----------~~~~~l~~~ 124 (345)
T d1v72a1 75 TP--------PWGNIYCH-PASHINNDECGAPEF---------FSNGAKLMTVDG-PAAK-----------LDIVRLRER 124 (345)
T ss_dssp CC--------TTEEEEEC-TTSHHHHSSTTHHHH---------HTTSCEEEECCC-GGGC-----------CCHHHHHHH
T ss_pred Hh--------cCCccccc-cccceeeechhhHHH---------hcCccccccccc-cccc-----------ccHHHhhhh
Confidence 54 22333332 222322111110000 000111121111 1111 356777777
Q ss_pred HHhC---CCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCC--cceeee
Q psy8199 415 LKKN---HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIW--PDFLCL 489 (965)
Q Consensus 415 l~~~---~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~--pDivt~ 489 (965)
+.+. .....++++++ +.++.+...++.+.++++.++|++||+++++|+++++++..+..+........ ++.+++
T Consensus 125 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (345)
T d1v72a1 125 TREKVGDVHTTQPACVSI-TQATEVGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSF 203 (345)
T ss_dssp TTSSTTCTTSCEEEEEEE-ESSCTTSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTTTGGGTCCEEEE
T ss_pred hcccccccccccceeeee-eccccccccccchhhhhHHHHHHhcCceeeecccccceeccccccCHHHhhcccccccccc
Confidence 7543 12344455555 44555555668888999999999999999999999976555554444444433 455667
Q ss_pred ccccCCCcccceeeeec-HHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccH---HHHHHHHHHHHHHHH
Q psy8199 490 SKGITGGYLPLSLVMTT-DKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNI---LQRISQDMKKITKAL 565 (965)
Q Consensus 490 sK~l~gG~~pig~v~~~-~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~---~~~~~~~~~~l~~~L 565 (965)
+|..++++ ..+..... ......... .....+++... ...++.+++..+.+... ..+...+.+++.+.+
T Consensus 204 ~~~~~~~~-~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~---~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 275 (345)
T d1v72a1 204 GATKNGVL-AAEAIVLFNTSLATEMSY----RRKRAGHLSSK---MRFLSAQIDAYLTDDLWLRNARKANAAAQRLAQGL 275 (345)
T ss_dssp CCGGGTCS-SCEEEEESSGGGHHHHHH----HHHHTTCCCSS---THHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred Cccccccc-cccccccchhhhhhhccc----cccccccccch---hhHHhhhhHHHHHHhhhhhhccchhhHHHHHHHHH
Confidence 77666553 34433333 222222221 01112222222 22333333433333222 222233333333333
Q ss_pred HcccCCCceeee-eceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec---CCEEEEeCCcccCHHHHHHHHHhh
Q psy8199 566 TSLITHPKIINF-RQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI---GNTVYLMPPYILNKNEIQHMTSAI 641 (965)
Q Consensus 566 ~~l~~~~~i~~v-~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~---~~~lR~~p~~~~t~~~i~~~~~~l 641 (965)
.+.+++... ++.+.+..+.+. ..+.+.|+++|+.+.+. .+.+||+++..+|+|+||.+++.+
T Consensus 276 ---~~~~g~~~~~p~~~niv~~~~~-----------~~~~~~L~~~gi~v~~~~~~~~~lR~~~~~~~T~edid~~le~l 341 (345)
T d1v72a1 276 ---EGLGGVEVLGGTEANILFCRLD-----------SAMIDALLKAGFGFYHDRWGPNVVRFVTSFATTAEDVDHLLNQV 341 (345)
T ss_dssp ---TTCTTEEEESCCCSSEEEEEEC-----------HHHHHHHHHTTCBCBCSSSSTTEEEEECCTTCCHHHHHHHHHHH
T ss_pred ---HhcCCcEeccCCCccEEEEEcC-----------HHHHHHHHHcCCCccccCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 455666544 334566666553 13567899999987542 379999999999999999999988
Q ss_pred hcc
Q psy8199 642 FQT 644 (965)
Q Consensus 642 ~~~ 644 (965)
+++
T Consensus 342 r~a 344 (345)
T d1v72a1 342 RLA 344 (345)
T ss_dssp HHT
T ss_pred HHh
Confidence 753
|
| >d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Glutamine aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=99.82 E-value=6.4e-20 Score=203.31 Aligned_cols=323 Identities=10% Similarity=0.079 Sum_probs=211.2
Q ss_pred cccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHH
Q psy8199 256 YLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSF 335 (965)
Q Consensus 256 ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~ 335 (965)
.||+..|.. .++ .+|.+++|+++.++....|....+ ..+|.+.+++.++.+.++|++++|+++|+..+++...
T Consensus 27 ~I~ls~g~p--~~~-~p~~i~~al~~~l~~~~~Y~~~~G----~~elr~aiA~~~~~~~~~Iiit~G~~~al~~~~~~l~ 99 (368)
T d1v2da_ 27 AVNLGQGFP--SNP-PPPFLLEAVRRALGRQDQYAPPAG----LPALREALAEEFAVEPESVVVTSGATEALYVLLQSLV 99 (368)
T ss_dssp CEECCCCSC--SSC-CCHHHHHHHHHHTTTSCSCCCTTC----CHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHHC
T ss_pred CEEecCCCC--CCC-CCHHHHHHHHHHhhcccCCCCCcC----CHHHHHHHHhhcccCCcceeeccchHHHHHHHhhccc
Confidence 578766533 122 578999999998876533332222 3466667777777778899999999999999998764
Q ss_pred HHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCC--CCCCCCCCCChhHHHHHHHHHHHH
Q psy8199 336 HYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTP--DSRNINKGNSANEIARCAIFDLEI 413 (965)
Q Consensus 336 ~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~d~~~le~ 413 (965)
. +++.|++.+++|+.+.......+. .....+.+ ..... .|++++++
T Consensus 100 ~--------~~d~v~~~~p~~~~~~~~~~~~g~-------------~~~~~~~~~~~~~~~-----------~d~~~l~~ 147 (368)
T d1v2da_ 100 G--------PGDEVVVLEPFFDVYLPDAFLAGA-------------KARLVRLDLTPEGFR-----------LDLSALEK 147 (368)
T ss_dssp C--------TTCEEEEEESCCTTHHHHHHHTTC-------------EEEEEECEEETTEEE-----------CCHHHHHT
T ss_pred c--------ccccccccCCcchhhhhHHHhcCC-------------ccceecccccccccc-----------CCHHHHHH
Confidence 3 568899999999877443333222 11222221 11111 26778877
Q ss_pred HHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccC--CCcceeeecc
Q psy8199 414 LLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAE--IWPDFLCLSK 491 (965)
Q Consensus 414 ~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~--~~pDivt~sK 491 (965)
++.+ .....++++| +|++|.+. +.+.+++|.++|++||+++|.||+|..+............. ..-.+.++||
T Consensus 148 ~~~~--~~~~i~~~~p--~NPtG~~~-~~~~l~~l~~~a~~~~i~ii~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sk 222 (368)
T d1v2da_ 148 ALTP--RTRALLLNTP--MNPTGLVF-GERELEAIARLARAHDLFLISDEVYDELYYGERPRRLREFAPERTFTVGSAGK 222 (368)
T ss_dssp TCCT--TEEEEEEESS--CTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHHHHCTTTEEEEEEHHH
T ss_pred hhcc--CceEEEEcCC--CCcccccC-CHHHHHHHHHHHHHcCCeeeechhhhhhcccccccccccccccccceeecccc
Confidence 7642 3334555555 89999776 78889999999999999999999997543332221111111 1122346788
Q ss_pred ccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHH----HHHHHHHHHHHHHHHc
Q psy8199 492 GITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNIL----QRISQDMKKITKALTS 567 (965)
Q Consensus 492 ~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~----~~~~~~~~~l~~~L~~ 567 (965)
..+..++++|++++++++++.+.. .....+.+.+++.+.++.+++......+.. +.++++.+++.+.|++
T Consensus 223 ~~~~~G~R~g~~~~~~~~~~~~~~------~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 296 (368)
T d1v2da_ 223 RLEATGYRVGWIVGPKEFMPRLAG------MRQWTSFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRA 296 (368)
T ss_dssp HTTCGGGCCEEEECCTTTHHHHHH------HHHHHTSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhhh------hhhccccccccccccccccccccccchhhHHHHHHHHHHhhhhhhhhHHh
Confidence 655544899999999998877765 234456677888888888888755444333 3445555666666665
Q ss_pred ccCCCceeeeeceeE-EEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec---------CCEEEEeCCcccCHHHHHHH
Q psy8199 568 LITHPKIINFRQKGM-IWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI---------GNTVYLMPPYILNKNEIQHM 637 (965)
Q Consensus 568 l~~~~~i~~v~g~G~-~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~---------~~~lR~~p~~~~t~~~i~~~ 637 (965)
+ ++....+.|. ++++.+. . .. + .+.+.++||.+.|+ .+++||+ +..++++++++
T Consensus 297 ~----g~~~~~p~g~~~~~~~l~--~----~~-~---~~ll~~~gI~v~pg~~F~~~~~~~~~iRis--~~~~~e~i~~a 360 (368)
T d1v2da_ 297 M----GLRVYVPEGTYFLMAELP--G----WD-A---FRLVEEARVALIPASAFYLEDPPKDLFRFA--FCKTEEELHLA 360 (368)
T ss_dssp T----TCCEECCSBSSEEEEECT--T----CC-H---HHHHHHTCEECEEGGGGCSSSCCTTEEEEE--CCSCHHHHHHH
T ss_pred c----CcEEecCCceeEEEEeCC--c----cH-H---HHHHHhCCEEEEechhhCCCCCCCCEEEEE--ecCCHHHHHHH
Confidence 4 5555666654 5555443 1 11 2 23466899999873 2689999 66789999999
Q ss_pred HHhhhcc
Q psy8199 638 TSAIFQT 644 (965)
Q Consensus 638 ~~~l~~~ 644 (965)
++++.++
T Consensus 361 i~rL~~~ 367 (368)
T d1v2da_ 361 LERLGRV 367 (368)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9988754
|
| >d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermotoga maritima [TaxId: 2336]
Probab=99.82 E-value=1.9e-19 Score=199.90 Aligned_cols=333 Identities=15% Similarity=0.148 Sum_probs=216.3
Q ss_pred cCCcccccccccchhccCCCCCHHHHHHHHHHHhhc-cccccCCCCcHHHHHHHHHHHhhcC--CCCCeEEEcCChhHHH
Q psy8199 251 FSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKL-EHVMLSNLTHKPVIKLSEKLSSLTQ--YKLGHCFYGSDGASAV 327 (965)
Q Consensus 251 ~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~-~~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~~~sGseA~ 327 (965)
..|+++||+..|.. .|. .++.+.+++.+.+++. ..|....+..+.+..+++.+.+..+ .+.+++++++|+++|+
T Consensus 25 ~~G~~vI~l~~G~p--~~~-~p~~i~~~~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~i~~t~G~~~al 101 (375)
T d1o4sa_ 25 KKGEDVINLTAGEP--DFP-TPEPVVEEAVRFLQKGEVKYTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQAL 101 (375)
T ss_dssp HTTCCCEECCCSSC--SSC-CCHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHH
T ss_pred HCCCCeEECCCcCC--CCC-CCHHHHHHHHHHHhcCCcCCCCCcCCHHHHHHHHhhhhhccccccccccccccCcHHHHH
Confidence 35888999988754 243 4788999999988763 2355555677888888888876654 3467999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHH
Q psy8199 328 EVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCA 407 (965)
Q Consensus 328 ~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 407 (965)
..++++... +++.|++.+++|..+......... ....++........ .+
T Consensus 102 ~~~~~~l~~--------~gd~vlv~~P~y~~~~~~~~~~~~-------------~~~~~~~~~~~~~~----------~~ 150 (375)
T d1o4sa_ 102 FNAFMALLD--------PGDEVIVFSPVWVSYIPQIILAGG-------------TVNVVETFMSKNFQ----------PS 150 (375)
T ss_dssp HHHHHHHCC--------TTCEEEEEESCCTTHHHHHHHTTC-------------EEEEEECCGGGTTC----------CC
T ss_pred HHHHHHHhC--------CCCEEEEccCccccchhhhhcccc-------------cccccccccccccc----------ch
Confidence 999887743 567899999999877433222221 12222222111111 13
Q ss_pred HHHHHHHHHhCCCcE-EEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccccccc-ccccCCCcc
Q psy8199 408 IFDLEILLKKNHNKI-AAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFA-CEHAEIWPD 485 (965)
Q Consensus 408 ~~~le~~l~~~~~~~-aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~-~~~~~~~pD 485 (965)
.+.++... ..++ ..++++| +|++|.+. +.+.+++|.++|++|++++|.||+|..+...+.... ....+....
T Consensus 151 ~~~~~~~~---~~~~~~~~l~nP--~NPTG~~~-s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~ 224 (375)
T d1o4sa_ 151 LEEVEGLL---VGKTKAVLINSP--NNPTGVVY-RREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDR 224 (375)
T ss_dssp HHHHHHTC---CTTEEEEEEESS--CTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTT
T ss_pred hHHHHHhh---ccCccEEEEeCC--CCCccCCC-CHHHHHHHHHhHHHcCCceehHhhhccccccccccccccccCCCCC
Confidence 44444433 3344 4555555 99999876 788899999999999999999999986643332211 122232333
Q ss_pred ee---eeccccC-CCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q psy8199 486 FL---CLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKI 561 (965)
Q Consensus 486 iv---t~sK~l~-gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l 561 (965)
++ +|||.++ .| +++|++++++++++.+.. .....+.......+.++...++.. .....+..+++.+.+
T Consensus 225 ~i~~~S~SK~~~l~G-~R~G~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~r~~~~ 296 (375)
T d1o4sa_ 225 IVYINGFSKSHSMTG-WRVGYLISSEKVATAVSK------IQSHTTSCINTVAQYAALKALEVD-NSYMVQTFKERKNFV 296 (375)
T ss_dssp EEEEEESTTTTTCGG-GCCEEEECCHHHHHHHHH------HHHHHTCSCCHHHHHHHHHHTTCC-CHHHHHHHHHHHHHH
T ss_pred EEEEeechhhccCCc-cccccccccccchhhhhh------hhccccccccccchhhhhhhcccc-hhhhHHHHHHHHHHH
Confidence 43 6899887 45 899999999998877754 122333444555555544443211 123556667777777
Q ss_pred HHHHHcccCCCceeeeeceeE-EEEEEEeecCccchhhHHHHHHHH-HHHcCcEEeec-----CCEEEEeCCcccCHHHH
Q psy8199 562 TKALTSLITHPKIINFRQKGM-IWAFDVIIEDPEQIETFSKKFFVA-ALKNELLLRPI-----GNTVYLMPPYILNKNEI 634 (965)
Q Consensus 562 ~~~L~~l~~~~~i~~v~g~G~-~~~i~~~~~~~~~~~~~~~~~~~~-l~~~Gi~~~~~-----~~~lR~~p~~~~t~~~i 634 (965)
.+.|++. ++....+.|. ++++.+. .+ ..++... +.++||++.|+ .+++||+ +..+++++
T Consensus 297 ~~~l~~~----g~~~~~p~gg~f~~~~~~-~~-------~~~~~~~ll~~~gV~v~pG~~F~~~g~iRis--~~~~~e~l 362 (375)
T d1o4sa_ 297 VERLKKM----GVKFVEPEGAFYLFFKVR-GD-------DVKFCERLLEEKKVALVPGSAFLKPGFVRLS--FATSIERL 362 (375)
T ss_dssp HHHHHHT----TCCCCCCSBSSEEEEECS-SC-------HHHHHHHHHHHHCEECEEGGGGTCTTEEEEE--CCSCHHHH
T ss_pred HHHHHhc----CceEecCCccEEEEEECC-CC-------HHHHHHHHHHhCCEEEEEccccCCCCeEEEE--EcCCHHHH
Confidence 7777665 4555566655 4555553 11 2234444 55789999984 2689999 56789999
Q ss_pred HHHHHhhhccc
Q psy8199 635 QHMTSAIFQTF 645 (965)
Q Consensus 635 ~~~~~~l~~~~ 645 (965)
+++++++.+.+
T Consensus 363 ~~al~rl~~~l 373 (375)
T d1o4sa_ 363 TEALDRIEDFL 373 (375)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99998887654
|
| >d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Tyrosine aminotransferase (TAT) species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.82 E-value=1.9e-19 Score=202.54 Aligned_cols=346 Identities=11% Similarity=0.016 Sum_probs=209.5
Q ss_pred ecCCcccccccccchhccCC-CCCHHHHHHHHHHHhhc--cccccCCCCcHHHHHHHHHHHhhc--------CCCCCeEE
Q psy8199 250 TFSGKRYLDAISSWWVNLFG-HSNSYINKALKNQLNKL--EHVMLSNLTHKPVIKLSEKLSSLT--------QYKLGHCF 318 (965)
Q Consensus 250 d~dG~~ylD~~~~~~~~~lG-h~~p~v~~av~~~~~~~--~~~~~~~~~~~~~~~la~~l~~~~--------~~~~~~v~ 318 (965)
+..++.+||+..|....... ...+.+++++.+.++.. ..|....+..++++.+++.+.+.+ +...++|+
T Consensus 26 ~~~~~~vI~L~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~~~~~~~~~~~~~~~I~ 105 (412)
T d1bw0a_ 26 SPSPKPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQECNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDNVV 105 (412)
T ss_dssp CCSCSCCEECCCCCTTTTSCSCCCHHHHHHHHHHHHTTCSSSCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGGGEE
T ss_pred CCCCCCcEECcCCCCCCCCCccccHHHHHHHHHHhhCCCCCCCCCCcCCHHHHHHHHHHHHHhcCcccccCCCCCCCeEE
Confidence 34556788887764321111 13567888888877653 234445566778888888887654 23567999
Q ss_pred EcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCC
Q psy8199 319 YGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGN 398 (965)
Q Consensus 319 ~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (965)
+|+|+++|+..++++..+ +++.|++.+++|+++...+...+. .++.+|........
T Consensus 106 it~G~~~al~~~~~~l~~--------~Gd~Vlv~~P~y~~~~~~~~~~G~-------------~~~~v~~~~~~~~~--- 161 (412)
T d1bw0a_ 106 LCSGGSHGILMAITAICD--------AGDYALVPQPGFPHYETVCKAYGI-------------GMHFYNCRPENDWE--- 161 (412)
T ss_dssp EESHHHHHHHHHHHHHCC--------TTCEEEEEESCCTHHHHHHHHTTC-------------EEEEEEEEGGGTTE---
T ss_pred Eecccccchhhhhhhhhc--------cccceeeeeccchhhhhhhhccCc-------------cccccccccccccc---
Confidence 999999999999987643 678999999999887544433332 22223321100000
Q ss_pred ChhHHHHHHHHHHHHHHHhCCCcEE-EEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccccc-cc
Q psy8199 399 SANEIARCAIFDLEILLKKNHNKIA-AIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKF-FA 476 (965)
Q Consensus 399 ~~~~~~~~d~~~le~~l~~~~~~~a-aii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~-~~ 476 (965)
.+++++++.+. ..+. .++++| +|++|.+. +.+.+++|.++|++|++++|+||+|.+|...|.. ..
T Consensus 162 -------~~~~~l~~~~~---~~~~~~~l~np--~NPtG~~~-~~~~~~~i~~~~~~~~~~vi~De~Y~~~~~~~~~~~~ 228 (412)
T d1bw0a_ 162 -------ADLDEIRRLKD---DKTKLLIVTNP--SNPCGSNF-SRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNA 228 (412)
T ss_dssp -------ECHHHHHHHCC---TTEEEEEEESS--CTTTCCCC-CHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTC
T ss_pred -------hhhHHHHhhhh---ccccccccccc--cccccccc-hhhhccccccccccCCeeeechhhHHHhccCCCCCcc
Confidence 24566666543 3444 455555 89999876 7888999999999999999999999988665532 11
Q ss_pred c-ccc---CCCccee---eeccccCCCcccceeeeecHHH------HHhhhccCCcccccccCCCCCCHHHHHHHHHHHH
Q psy8199 477 C-EHA---EIWPDFL---CLSKGITGGYLPLSLVMTTDKI------YNSIYYKNNINIFLHSHSYSGNPLACCAALATLE 543 (965)
Q Consensus 477 ~-~~~---~~~pDiv---t~sK~l~gG~~pig~v~~~~~i------~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~ 543 (965)
. ... ......+ ++||.++..++++|++++++.. +..... ....+.+.++..++++.+.+.
T Consensus 229 ~~~~~~~~~~~~~~~~~~s~SK~~~~~G~RvG~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~ 301 (412)
T d1bw0a_ 229 TFTSVADFETTVPRVILGGTAKNLVVPGWRLGWLLYVDPHGNGPSFLEGLKR-------VGMLVCGPCTVVQAALGEALL 301 (412)
T ss_dssp CCCCTTSSCCSCCEEEEEESTTTTSCGGGCCEEEEEECTTCSCHHHHHHHHH-------HHHHHTCSCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccCccCccCCCCcccccccchhhcchhhhhhhcc-------ccccccCCchhhhhhcccccc
Confidence 1 111 1112233 4799877544999999886432 222211 122233445555555544442
Q ss_pred HHhc---ccHHHHHHHHHHHHHHHHHcccCCCceeeeeceeEEE-EEEEeecCccchhhHHHHHHHHHH-HcCcEEeec-
Q psy8199 544 IFNK---DNILQRISQDMKKITKALTSLITHPKIINFRQKGMIW-AFDVIIEDPEQIETFSKKFFVAAL-KNELLLRPI- 617 (965)
Q Consensus 544 ~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~G~~~-~i~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~- 617 (965)
.-.+ ....++++++.+.+.+.| .+.+++....+.|.++ ++.+. ...........++++.|+ +.||++.|+
T Consensus 302 ~~~~~~~~~~~~~~~~~r~~~~~~l---~~~~g~~~~~p~gg~~l~~~~~-~~~~~~~~~~~~~~~~ll~~~gV~v~PG~ 377 (412)
T d1bw0a_ 302 NTPQEHLDQIVAKIEESAMYLYNHI---GECIGLAPTMPRGAMYLMSRID-LEKYRDIKTDVEFFEKLLEEENVQVLPGT 377 (412)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHH---TTSTTEEECCCCBTTEEEEEEC-GGGBSSCCSHHHHHHHHHHHHCEECEEGG
T ss_pred cccccccccccchhHHHHHHHHHHH---HHhcCceecCCCCceEEEEeCC-hhhcCCCCCHHHHHHHHHHhCCEEEEecc
Confidence 1111 123333444444444444 3445677667776554 44443 110001112335666665 569999984
Q ss_pred ----CCEEEEeCCcccCHHHHHHHHHhhhccc
Q psy8199 618 ----GNTVYLMPPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 618 ----~~~lR~~p~~~~t~~~i~~~~~~l~~~~ 645 (965)
.+++||+ ++.++++++++++++.+.+
T Consensus 378 ~Fg~~g~iRis--~~~~~e~l~eal~Rl~~~l 407 (412)
T d1bw0a_ 378 IFHAPGFTRLT--TTRPVEVYREAVERIKAFC 407 (412)
T ss_dssp GGTCTTEEEEE--CCSCHHHHHHHHHHHHHHH
T ss_pred ccCCCCeEEEE--EcCCHHHHHHHHHHHHHHH
Confidence 2799999 6788999999988887544
|
| >d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Escherichia coli [TaxId: 562]
Probab=99.82 E-value=1.1e-20 Score=216.26 Aligned_cols=332 Identities=10% Similarity=0.032 Sum_probs=206.1
Q ss_pred CCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCcc
Q psy8199 294 LTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFK 373 (965)
Q Consensus 294 ~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~ 373 (965)
..++...+|++++++++ +.+.+++++||++||+.|++++++++......++...+.....||+.+.+....+|...
T Consensus 71 ~~~~~~~~le~~~a~l~--G~~~~~~~~sGt~A~~~a~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~G~~~-- 146 (467)
T d2v1pa1 71 SGSRSYYALAESVKNIF--GYQYTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTV-- 146 (467)
T ss_dssp SSCHHHHHHHHHHHHHT--CCSEEEEECSSTTTHHHHHHHHHHHHHHHHCCCTTTCEEEESSCCHHHHHHHHHTTCEE--
T ss_pred cCCchHHHHHHHHHHHH--CCCEEEECCCCHHHHHHHHHHHhhccceEecCCCCcEEEEecccccccHHHHHHcCCee--
Confidence 34778889999999999 57899999999999999999999887666656677788888999998877777766321
Q ss_pred chhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhC-CCcEEEEEEccccccCCCcccCChHHHHHHHHHH
Q psy8199 374 EIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKN-HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREIC 452 (965)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~-~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~ 452 (965)
..++.+...... .........|+++|++++++. +..+++|++|+ +++.+|..+++.+++++|+++|
T Consensus 147 ----------~~~~~~~~~~~~--~~~~~~~~~d~~~l~~~i~~~~~~~~~~i~~e~-~~~~~gg~~~~~~~l~~i~~ia 213 (467)
T d2v1pa1 147 ----------RNVYIKEAFDTG--VRYDFKGNFDLEGLERGIEEVGPNNVPYIVATI-TSNSAGGQPVSLANLKAMYSIA 213 (467)
T ss_dssp ----------EECBCTTTTCTT--SCCTTTTCBCHHHHHHHHHHHCGGGCCCEEEES-SBCGGGCBCCCHHHHHHHHHHH
T ss_pred ----------eecccccccccc--cccccccCCCHHHHHHHHhhcCccccceeeecc-eeeccccccCCHHHHHHHHHHH
Confidence 111111110000 000001124789999998765 45689999999 8999888889999999999999
Q ss_pred HhcCCeEEEeccccC---CCcccccccccccC---------CCcceeeeccccCCCcccceeeee-cHH-HHHhhhcc-C
Q psy8199 453 NNYNIHLIADEIAVG---CGRTGKFFACEHAE---------IWPDFLCLSKGITGGYLPLSLVMT-TDK-IYNSIYYK-N 517 (965)
Q Consensus 453 ~~~g~llI~DEv~tg---~gr~G~~~~~~~~~---------~~pDivt~sK~l~gG~~pig~v~~-~~~-i~~~~~~~-~ 517 (965)
++||++||+|+++.. ++..+..+.+...+ -..|++++|++.+++ .|.|++++ +++ +....... .
T Consensus 214 ~~~g~~l~~D~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~K~~~-~~~gg~i~~~~~~~~~~~~~~~~ 292 (467)
T d2v1pa1 214 KKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAM-VPMGGLLCMKDDSFFDVYTECRT 292 (467)
T ss_dssp HHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSSTTC-CSSCEEEEECSGGGHHHHHHHHH
T ss_pred HHcCCEEEEechhhhccccccccccccccCCcccccchhhcccCCEEEecCCCCCC-CCCceeEEecchhhhhHHHhhcc
Confidence 999999999999852 11111122222222 236888887765554 25555544 433 22222110 0
Q ss_pred CcccccccCCCCCCHHHHH-HHHHHHHHHhcccHHHHHHHHHHHHHHHHHcccCCCceeeeeceeEEEEEEEeecCccch
Q psy8199 518 NINIFLHSHSYSGNPLACC-AALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQI 596 (965)
Q Consensus 518 ~~~~~~~~~t~~~~~~~~a-aa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~ 596 (965)
......++.++.+.+.+.+ ++...+.....++..++..++.++|.++|.+.. ..+....+.+.+...... ......
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~--~~v~~~~~~~~~~~~~~~-~~~~~~ 369 (467)
T d2v1pa1 293 LCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLDWLAYRIAQVQYLVDGLEEIG--VVCQQAGGHAAFVDAGKL-LPHIPA 369 (467)
T ss_dssp HHHHTTSSCCCCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTT--CCEEEECSSCEEEEHHHH-STTSCG
T ss_pred cccccccCcchhhhHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHHHHhcC--CcccCCCccceeecchhh-cCCcch
Confidence 0011233455555555444 444445555556788888899999999998751 112222222222211110 000011
Q ss_pred hh-H-HHHHHHHHHHcCcEEe------------------ecCCEEEEeCC-cccCHHHHHHHHHhhhcccc
Q psy8199 597 ET-F-SKKFFVAALKNELLLR------------------PIGNTVYLMPP-YILNKNEIQHMTSAIFQTFN 646 (965)
Q Consensus 597 ~~-~-~~~~~~~l~~~Gi~~~------------------~~~~~lR~~p~-~~~t~~~i~~~~~~l~~~~~ 646 (965)
.. . .....+.+.+.||... +..+.+||++| .++|++++|.+++++.++..
T Consensus 370 ~~~~~~~~~~~ll~~~Gi~~~~~g~~~~~~~~~~~~~~~~~~~~vRlaip~~~~T~eeiD~vv~~l~~v~~ 440 (467)
T d2v1pa1 370 DQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKE 440 (467)
T ss_dssp GGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEECCCTTTCCHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHcCCeeecccccccccccccCCccCCCcceEEEecCCCCCCHHHHHHHHHHHHHHHH
Confidence 11 1 1123445567787442 11258999865 67899999999998887654
|
| >d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]
Probab=99.82 E-value=6.6e-19 Score=198.34 Aligned_cols=345 Identities=14% Similarity=0.100 Sum_probs=219.9
Q ss_pred ccccccccchhccCCCCCHHHHHHHHHHHhhc----cccccCCCCcHHHHHHHHHHHhhcCCC---CCeEEEcCChhHHH
Q psy8199 255 RYLDAISSWWVNLFGHSNSYINKALKNQLNKL----EHVMLSNLTHKPVIKLSEKLSSLTQYK---LGHCFYGSDGASAV 327 (965)
Q Consensus 255 ~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~----~~~~~~~~~~~~~~~la~~l~~~~~~~---~~~v~~~~sGseA~ 327 (965)
..||+..|.. --..++.+.+|+++++... ..|....+..+.++.+|+.+.+..+.. .++|++|+|+++|+
T Consensus 27 ~~I~L~~G~P---d~~~p~~i~eal~~a~~~~~~~~~~Y~~~~G~~~lReaiA~~~~~~~g~~~~p~~~I~it~G~~~al 103 (418)
T d2r5ea1 27 KPLNLGQGFP---DYHAPKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEAL 103 (418)
T ss_dssp CCEECSSSCC---SSCCCHHHHHHHHHHHTCSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHH
T ss_pred CCEEccCCCC---CCCCCHHHHHHHHHHHhCCCccCcCCCCCCCCHHHHHHHHHHHHHHhCCCCCccceEEEcCCCchhh
Confidence 4578776643 1224688999999988653 224445566778888999998876543 36899999999999
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHH
Q psy8199 328 EVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCA 407 (965)
Q Consensus 328 ~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 407 (965)
..+++.... +++.|++.+++|+++.......++. .+.++........ ...+..-..+
T Consensus 104 ~~~~~~l~~--------~gd~vlv~~P~y~~~~~~~~~~g~~-------------~~~v~~~~~~~~~--~~~~~~~~~~ 160 (418)
T d2r5ea1 104 YATIQGHVD--------EGDEVIIIEPFFDCYEPMVKAAGGI-------------PRFIPLKPNKTGG--TISSADWVLD 160 (418)
T ss_dssp HHHHHHHCC--------TTCEEEEEESCCTTHHHHHHHTTCE-------------EEEEECEESCCSS--CEEGGGEECC
T ss_pred hhhhhhccc--------cccceeccccccchhhHHHHHcCCe-------------EEEEEeccccccc--chhhhhhhhh
Confidence 999987753 6789999999998885444443331 1222221100000 0000000013
Q ss_pred HHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccccc--ccccccCCCcc
Q psy8199 408 IFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKF--FACEHAEIWPD 485 (965)
Q Consensus 408 ~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~--~~~~~~~~~pD 485 (965)
.+++++.. ...++++++.+ .+|++|.+. +++.+++|.++|++||+++|.||+|..+...+.. ......+..+.
T Consensus 161 ~~~~~~~~---~~~~~~~~i~~-p~NPtG~~~-s~e~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~s~~~~~~~~~~ 235 (418)
T d2r5ea1 161 NNELEALF---NEKTKMIIINT-PHNPLGKVM-DRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWER 235 (418)
T ss_dssp HHHHHHHC---CTTEEEEEEES-SCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGG
T ss_pred HHHHhhhh---hccccceecCC-cCccccccc-cHHHHHHHhhhhhcCCeeeecccchhhhccCCCccccccccccccce
Confidence 45554443 34566666665 699999876 7888999999999999999999999876443321 11122233334
Q ss_pred ee---eeccccC-CCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh----c-cc----HHH
Q psy8199 486 FL---CLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN----K-DN----ILQ 552 (965)
Q Consensus 486 iv---t~sK~l~-gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~----~-~~----~~~ 552 (965)
++ ++||.++ .| +++|++++++++++.+.. .....+++.+.+.+.++.+.+.... . ++ ..+
T Consensus 236 ~i~~~S~SK~~~~pG-lRiG~~~~~~~~i~~~~~------~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~ 308 (418)
T d2r5ea1 236 TITIGSAGKTFSLTG-WKIGWAYGPEALLKNLQM------VHQNCVYTCATPIQEAIAVGFETELKRLKSPECYFNSISG 308 (418)
T ss_dssp EEEEEEHHHHTTCGG-GCCEEEESCHHHHHHHHH------HHTTTTCSCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHH
T ss_pred eeeeecCCccccCCC-cccccccccchhhhhhhh------cccccccccccchhhhccccccccccccccchhhHHHHHH
Confidence 44 6899876 45 899999999999888765 2234566677777777766664321 1 22 334
Q ss_pred HHHHHHHHHHHHHHcccCCCceeeeeceeEE-EEEEEeecCc-------cchhhHHHHHHHHHH-HcCcEEeec------
Q psy8199 553 RISQDMKKITKALTSLITHPKIINFRQKGMI-WAFDVIIEDP-------EQIETFSKKFFVAAL-KNELLLRPI------ 617 (965)
Q Consensus 553 ~~~~~~~~l~~~L~~l~~~~~i~~v~g~G~~-~~i~~~~~~~-------~~~~~~~~~~~~~l~-~~Gi~~~~~------ 617 (965)
..+.+.+.+.+.|+++ ++....++|.| +++++. ... ........++++.|+ +.||.+.|+
T Consensus 309 ~~~~~r~~l~~~L~~~----g~~~~~P~gg~f~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~~~ 383 (418)
T d2r5ea1 309 ELMAKRDYMASFLAEV----GMNPTVPQGGYFMVADWS-SLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSE 383 (418)
T ss_dssp HHHHHHHHHHHHHHHT----TCEEEECSBSSEEEEECG-GGSTTCCGGGCCCSSHHHHHHHHHHHHHSEECBCGGGGSCG
T ss_pred HHHHhhhhHHhhHhhc----CCcccCCCceeEEEEEcc-cccccccchhcccccCHHHHHHHHHHHCCEEEeCchhhCCC
Confidence 4555666676767654 55556666654 455553 100 001112345666665 569999874
Q ss_pred ------CCEEEEeCCcccCHHHHHHHHHhhhcc
Q psy8199 618 ------GNTVYLMPPYILNKNEIQHMTSAIFQT 644 (965)
Q Consensus 618 ------~~~lR~~p~~~~t~~~i~~~~~~l~~~ 644 (965)
.+++|++ +..++++++++++++++.
T Consensus 384 ~~~~~g~~~iRis--~~~~~e~l~~a~~rl~~~ 414 (418)
T d2r5ea1 384 PNKHLGEDFVRYC--FFKKDENLQKAAEILRKW 414 (418)
T ss_dssp GGHHHHTTEEEEE--CCSCHHHHHHHHHHHHHH
T ss_pred CCccCCCCEEEEE--ecCCHHHHHHHHHHHHHH
Confidence 1589999 567899999999988764
|
| >d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystalysin species: Treponema denticola [TaxId: 158]
Probab=99.81 E-value=3e-19 Score=199.43 Aligned_cols=343 Identities=13% Similarity=0.041 Sum_probs=205.6
Q ss_pred cCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCC--CCCeEEEcCChhHHHH
Q psy8199 251 FSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQY--KLGHCFYGSDGASAVE 328 (965)
Q Consensus 251 ~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~--~~~~v~~~~sGseA~~ 328 (965)
..|+.+||+..|.. .|. .+|+|++|+.++++...+ ..+.+..+++..+++.+.+..+. ..++|++|+|+++|+.
T Consensus 28 ~~g~~vi~l~~g~p--df~-~p~~v~~al~~~~~~~~~-~Y~~g~~~Lr~aia~~~~~~~g~~~~~~~I~vt~G~~~al~ 103 (394)
T d1c7na_ 28 EVGNEVVPLSVADM--EFK-NPPELIEGLKKYLDETVL-GYTGPTEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVF 103 (394)
T ss_dssp TCCTTCCCCCSSSC--SSC-CCHHHHHHHHHHHHHCCC-SSBCCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHH
T ss_pred hcCCCeEEccCCCC--CCC-CCHHHHHHHHHHHhCCCc-CCCCCCHHHHHHHHHHHHHhcCCCCCCcceEeeccchhhhh
Confidence 45788899876643 232 589999999999877422 11234556677788888776543 4579999999999999
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCC-CCCCCCCCCChhHHHHHH
Q psy8199 329 VALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTP-DSRNINKGNSANEIARCA 407 (965)
Q Consensus 329 ~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d 407 (965)
.++++... +++.|++.++.|.++.......++. .+.++.. ...... .|
T Consensus 104 ~~~~~~~~--------pgd~vi~~~p~~~~~~~~~~~~g~~-------------~v~~~~~~~~~~~~----------~d 152 (394)
T d1c7na_ 104 NAVREFTK--------PGDGVIIITPVYYPFFMAIKNQERK-------------IIECELLEKDGYYT----------ID 152 (394)
T ss_dssp HHHHHHCC--------TTCEEEECSSCCTHHHHHHHTTTCE-------------EEECCCEEETTEEE----------CC
T ss_pred hhhccccc--------cccccccccCcccchhhHHhhhhhc-------------cccccccccccccc----------ch
Confidence 99987743 6788999999998774443333321 1111110 000000 14
Q ss_pred HHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccc-cc--cCCCc
Q psy8199 408 IFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFAC-EH--AEIWP 484 (965)
Q Consensus 408 ~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~-~~--~~~~p 484 (965)
.+.++.++. ..++.++++.. ++|++|.+. +.+.+++|.++|++|++++|+||+|..|-..+..... .. .+...
T Consensus 153 ~~~~~~~~~--~~~~~~i~l~~-P~NPTG~v~-s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~ 228 (394)
T d1c7na_ 153 FQKLEKLSK--DKNNKALLFCS-PHNPVGRVW-KKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLAD 228 (394)
T ss_dssp HHHHHHHHT--CTTEEEEEEES-SBTTTTBCC-CHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHT
T ss_pred hhhhhhhhc--cccceEEEecc-cccccceec-cHHHhhhhhccccccceeEeccccccccccCCccccchhhhhccccc
Confidence 555665553 34455555555 599999876 7888999999999999999999999987544432111 11 11112
Q ss_pred cee---eeccccCCCcccceeeeecH-HHHHhhhccCCcccccccCCCC-CCHHHHHHHHHHHHHHhc--ccHHHHHHHH
Q psy8199 485 DFL---CLSKGITGGYLPLSLVMTTD-KIYNSIYYKNNINIFLHSHSYS-GNPLACCAALATLEIFNK--DNILQRISQD 557 (965)
Q Consensus 485 Div---t~sK~l~gG~~pig~v~~~~-~i~~~~~~~~~~~~~~~~~t~~-~~~~~~aaa~a~L~~~~~--~~~~~~~~~~ 557 (965)
..+ ++||.++-.++++|++++++ .+.+.+.. .....+.. .....++++........+ +...+..+++
T Consensus 229 ~~i~~~s~SK~~~~~G~R~g~~~~~~~~i~~~~~~------~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 302 (394)
T d1c7na_ 229 KTITFTAPSKTFNIAGMGMSNIIIKNPDIRERFTK------SRDATSGMPFTTLGYKACEICYKECGKWLDGCIKVIDKN 302 (394)
T ss_dssp TEEEEECSHHHHTCGGGCCEEEECCCHHHHHHHHH------HHHHTTCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred ceeecccccccccccccccccccccChhhhhhhhh------hhhhccccccccccchhhhhhhcchhhhhcccccccchh
Confidence 222 57997653228999887764 55555543 11112222 223333333333322111 2233334444
Q ss_pred HHHHHHHHHcccCCCceeeeeceeEEE-EEEEeecCccchhhHHHHHHHHHHHc-CcEEeec-------CCEEEEeCCcc
Q psy8199 558 MKKITKALTSLITHPKIINFRQKGMIW-AFDVIIEDPEQIETFSKKFFVAALKN-ELLLRPI-------GNTVYLMPPYI 628 (965)
Q Consensus 558 ~~~l~~~L~~l~~~~~i~~v~g~G~~~-~i~~~~~~~~~~~~~~~~~~~~l~~~-Gi~~~~~-------~~~lR~~p~~~ 628 (965)
.+.+.+.++. ..+++....+.|.++ ++++. ..+. ....+++.|+++ ||++.|+ .+++||+ +.
T Consensus 303 ~~~~~~~l~~--~~~~~~~~~p~g~~~~~~~~~-~~~~----~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis--~~ 373 (394)
T d1c7na_ 303 QRIVKDFFEV--NHPEIKAPLIEGTYLQWIDFR-ALKM----DHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERIN--LA 373 (394)
T ss_dssp HHHHHHHHHH--HCTTSBCCCCSBSSEEEEECG-GGCC----CHHHHHHHHHHTTCCCCEEGGGGCGGGTTEEEEE--CC
T ss_pred hhhhhhhhhc--cccceeecCCCceeEEEEECC-CCCC----CHHHHHHHHHHhCCEEEEcchhhCCCCCCEEEEE--Ee
Confidence 4444444432 234555556666654 44443 1111 134566777654 9999873 2689999 66
Q ss_pred cCHHHHHHHHHhhhccccc
Q psy8199 629 LNKNEIQHMTSAIFQTFNE 647 (965)
Q Consensus 629 ~t~~~i~~~~~~l~~~~~~ 647 (965)
.+++.++++++++.+++.+
T Consensus 374 ~~~e~i~eal~rl~~~l~~ 392 (394)
T d1c7na_ 374 APSSVIQESLERLNKALKD 392 (394)
T ss_dssp SCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHh
Confidence 7888999999988766543
|
| >d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.81 E-value=4.5e-19 Score=199.58 Aligned_cols=350 Identities=12% Similarity=0.150 Sum_probs=221.6
Q ss_pred CCcccccccccchhccCCCCCHHHHHHHHHHHhhc---cccccCCCCcHHHHHHHHHHHhhcCCCC---CeEEEcCChhH
Q psy8199 252 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKL---EHVMLSNLTHKPVIKLSEKLSSLTQYKL---GHCFYGSDGAS 325 (965)
Q Consensus 252 dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~---~~~~~~~~~~~~~~~la~~l~~~~~~~~---~~v~~~~sGse 325 (965)
.+..+||+..|.. .+. .++.+.+|+++++.+. ..|....+..+.++.+++.+.+.++... ++|++|+|+++
T Consensus 23 ~~~dvI~l~~G~p--~~~-~p~~v~~a~~~al~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~~I~it~G~~~ 99 (418)
T d1w7la_ 23 SEHDVVNLGQGFP--DFP-PPDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYG 99 (418)
T ss_dssp HTSCCEECCCCSC--SSC-CCHHHHHHHHHHTSSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHH
T ss_pred CCCCCEECCCCCC--CCC-CCHHHHHHHHHHHhCCCcccCCCCCcCCHHHHHHHHHHHHHHhCCCCCcccceeeccCcHH
Confidence 3556899887754 222 3677899999988653 2355556677788889999888776543 37999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecC-CCCCCCCCCCChhHHH
Q psy8199 326 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITT-PDSRNINKGNSANEIA 404 (965)
Q Consensus 326 A~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 404 (965)
|+..+++.+.. +++.|++.+++|+.+.......+... +.++. |.............+.
T Consensus 100 al~~~~~~l~~--------~g~~vlv~~p~~~~y~~~~~~~g~~~-------------v~~~~~~~~~~~~~~~~~~~~~ 158 (418)
T d1w7la_ 100 ALFTAFQALVD--------EGDEVIIIEPFFDCYEPMTMMAGGRP-------------VFVSLKPGPIQNGELGSSSNWQ 158 (418)
T ss_dssp HHHHHHHHHCC--------TTCEEEEEESCCTTHHHHHHHTTCEE-------------EEEECEECC---CCSEEGGGEE
T ss_pred HHHHHHHhhcc--------CCceeeccccccchhHHHHHHcCCEe-------------eccccccccccccccccccCcc
Confidence 99999987753 57889999999998854444444321 11110 0000000000000000
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccccc-ccc-cccCC
Q psy8199 405 RCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKF-FAC-EHAEI 482 (965)
Q Consensus 405 ~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~-~~~-~~~~~ 482 (965)
.|..++... ....+.++++.. .+|++|.+. +++.+++|.++|++|++++|.||+|..|.+.+.. ... ...+.
T Consensus 159 -~d~~~~~~~---~~~~~~~i~~~~-p~NPtG~~~-s~~~~~~i~~~a~~~~v~vI~De~Y~~l~~~~~~~~~~~~~~~~ 232 (418)
T d1w7la_ 159 -LDPMELAGK---FTSRTKALVLNT-PNNPLGKVF-SREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGM 232 (418)
T ss_dssp -CCHHHHHHH---CCTTEEEEEEES-SCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTT
T ss_pred -cchhhhhcc---ccccccceeccC-cCCcccccc-cHHHHHHHHHHHHhcCCCchhhhhhHHhhcCCCCCCCHHHcccc
Confidence 123333332 234555555544 488999776 7888999999999999999999999988655542 222 22233
Q ss_pred Cccee---eeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh---c--cc----H
Q psy8199 483 WPDFL---CLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN---K--DN----I 550 (965)
Q Consensus 483 ~pDiv---t~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~---~--~~----~ 550 (965)
.+.++ ++||.++..++++|++++++++++.+.. +....+++.+.+++.++.++|.... + .+ .
T Consensus 233 ~~~~i~~~S~SK~~~~pG~RvG~~v~~~~~~~~l~~------~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~ 306 (418)
T d1w7la_ 233 WERTLTIGSAGKTFSATGWKVGWVLGPDHIMKHLRT------VHQNSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQF 306 (418)
T ss_dssp GGGEEEEEEHHHHTTCGGGCCEEEECCHHHHHHHHH------HHHTTTSCCCHHHHHHHHHHHHHHHHTTTSTTSHHHHH
T ss_pred ccccceecccCccccCCCCcccccccchhhhhhhcc------ccccccccccchhhHHHHHHhhhccccccccccccccc
Confidence 33344 6799876433899999999999887765 3334567778888888888876422 1 12 3
Q ss_pred HHHHHHHHHHHHHHHHcccCCCceeeeeceeE-EEEEEEee---c--C--ccchhhHHHHHHHH-HHHcCcEEeec----
Q psy8199 551 LQRISQDMKKITKALTSLITHPKIINFRQKGM-IWAFDVII---E--D--PEQIETFSKKFFVA-ALKNELLLRPI---- 617 (965)
Q Consensus 551 ~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~G~-~~~i~~~~---~--~--~~~~~~~~~~~~~~-l~~~Gi~~~~~---- 617 (965)
.+.++++.+.+.+.|+++ ++...++.|. ++++++.. . + ..........+++. |.++||.+.|+
T Consensus 307 ~~~~~~~r~~l~~~L~~~----g~~~~~P~gg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~ 382 (418)
T d1w7la_ 307 PQAMQRCRDHMIRSLQSV----GLKPLIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFY 382 (418)
T ss_dssp HHHHHHHHHHHHHHHHTT----TCEEEECSBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGS
T ss_pred hhhhhhhhhhhhhhhhhc----CCcccCCCceeEEEEECcccccccchhccccccccHHHHHHHHHHHCCEEEEcchhhc
Confidence 444555666666666554 5565666655 45555430 0 0 00011123345555 45779999874
Q ss_pred --------CCEEEEeCCcccCHHHHHHHHHhhhc
Q psy8199 618 --------GNTVYLMPPYILNKNEIQHMTSAIFQ 643 (965)
Q Consensus 618 --------~~~lR~~p~~~~t~~~i~~~~~~l~~ 643 (965)
.+++|++ ++.+++.++++++++++
T Consensus 383 ~~~~~~~~~~~iRis--~~~~~~~l~~a~~rl~~ 414 (418)
T d1w7la_ 383 SVPHQKHFDHYIRFC--FVKDEATLQAMDEKLRK 414 (418)
T ss_dssp CHHHHTTSCSEEEEE--CCCCHHHHHHHHHHHHH
T ss_pred CCCccCCCCCEEEEE--EcCCHHHHHHHHHHHHH
Confidence 1689999 67789999999988865
|
| >d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative aminotransferase TM1131 species: Thermotoga maritima [TaxId: 2336]
Probab=99.81 E-value=2.8e-19 Score=201.70 Aligned_cols=347 Identities=12% Similarity=0.073 Sum_probs=221.3
Q ss_pred CCcccccccccchhccCCCCCHHHHHHHHHHHhhc----cccccCCCCcHHHHHHHHHHHhhcCC---CCCeEEEcCChh
Q psy8199 252 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKL----EHVMLSNLTHKPVIKLSEKLSSLTQY---KLGHCFYGSDGA 324 (965)
Q Consensus 252 dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~----~~~~~~~~~~~~~~~la~~l~~~~~~---~~~~v~~~~sGs 324 (965)
.++.+|||..|.....+ ...+.+.+++++.++.. ..|+...+..+.++.+++.+.+..+. +.++|++|+|++
T Consensus 36 ~~~~~I~l~~G~Pd~~~-~P~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~~I~it~G~~ 114 (420)
T d1vp4a_ 36 ADKDAISFGGGVPDPET-FPRKELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQ 114 (420)
T ss_dssp TSTTCEECCCCSCCGGG-SCHHHHHHHHHHHHHHSHHHHTSCCCTTCCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHH
T ss_pred CCCCcEecCCcCCCCcc-CCHHHHHHHHHHHHhhCCccccCCCCCcCCHHHHHHHHHHHHHHhCCCCCCHHHeEeccchh
Confidence 56788888776532111 12345666666666543 12444556677888888888877643 467899999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHH
Q psy8199 325 SAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIA 404 (965)
Q Consensus 325 eA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (965)
+|+..++.+... +++.|++.+++|..+.......+. ....+|.....
T Consensus 115 ~al~~~~~~~~~--------~Gd~Vlv~~P~y~~~~~~~~~~g~-------------~~~~~~~~~~~------------ 161 (420)
T d1vp4a_ 115 QALDLIGKLFLD--------DESYCVLDDPAYLGAINAFRQYLA-------------NFVVVPLEDDG------------ 161 (420)
T ss_dssp HHHHHHHHHHCC--------TTCEEEEEESCCHHHHHHHHTTTC-------------EEEEEEEETTE------------
T ss_pred hhHHHHHHhhhc--------cccccccccccccchhHHHHHHhh-------------hcccccccccc------------
Confidence 999999887643 678899999999887444333322 22233321100
Q ss_pred HHHHHHHHHHHHh------CCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccccccccc
Q psy8199 405 RCAIFDLEILLKK------NHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACE 478 (965)
Q Consensus 405 ~~d~~~le~~l~~------~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~ 478 (965)
.+++.++..+.+ .....+++++.+ .+|++|.+. +.+.+++|.++|++|++++|.||+|..|...+......
T Consensus 162 -~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-p~NPtG~~~-s~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~ 238 (420)
T d1vp4a_ 162 -MDLNVLERKLSEFDKNGKIKQVKFIYVVSN-FHNPAGVTT-SLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPI 238 (420)
T ss_dssp -ECHHHHHHHHHHHHHTTCGGGEEEEEEECS-SCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCH
T ss_pred -cccchhhhhhhhhHHHhhccccceeeEecC-CCCccchhh-hhhhhhhhhhhhhcccccccccchhhhccccCcccccc
Confidence 122333222211 123345555555 688888775 88889999999999999999999999875555422111
Q ss_pred ccCCCccee----eeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc----ccH
Q psy8199 479 HAEIWPDFL----CLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK----DNI 550 (965)
Q Consensus 479 ~~~~~pDiv----t~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~----~~~ 550 (965)
.....++.+ +++|....| +++|++++++++++.+.. .....+.+.+.+.++++...++.-.. .+.
T Consensus 239 ~~~~~~~~~i~~~s~sk~~~~G-~RiG~~~~~~~~i~~l~~------~~~~~~~~~~~~~q~~~a~~l~~~~~~~~~~~~ 311 (420)
T d1vp4a_ 239 FKIGGPERVVLLNTFSKVLAPG-LRIGMVAGSKEFIRKIVQ------AKQSADLCSPAITHRLAARYLERYDLLEQLKPT 311 (420)
T ss_dssp HHHHCTTTEEEEEESTTTTCGG-GCEEEEECCHHHHHHHHH------HHHHHHSSCCHHHHHHHHHHHHHSCHHHHTHHH
T ss_pred cccccccceeEEeccccccccc-cccccccccchhhhhhhh------hhhhccccCchhhhhhhhhhcccccccccchhH
Confidence 111123322 456765556 899999999999988765 12233445677777777777653211 234
Q ss_pred HHHHHHHHHHHHHHHHcc-cCCCceeeeeceeE-EEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec---------CC
Q psy8199 551 LQRISQDMKKITKALTSL-ITHPKIINFRQKGM-IWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI---------GN 619 (965)
Q Consensus 551 ~~~~~~~~~~l~~~L~~l-~~~~~i~~v~g~G~-~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~---------~~ 619 (965)
.+..+++.+.+.+.|++. ...+++....+.|. ++++.+. ++.+ ...+.+.|.++||++.|+ .+
T Consensus 312 ~~~~~~~~~~~~~~L~~~~~~~~g~~~~~p~gg~f~~~~~~--~~~d----~~~~~~~l~~~gV~v~PG~~F~~~~~~~~ 385 (420)
T d1vp4a_ 312 IELYRRKRTVMLNALEEYFSDIPGVKWVKSEGGLFIWLTLP--EGFD----TWEMFEYAKRKKVFYVPGRVFKVYDEPSP 385 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSTTCEECCCSBSSEEEEECC--TTCC----TTTTHHHHHHHTEECEEGGGGCTTCCCCS
T ss_pred HHHhhhhcccchhhhhhhhccCCCcEEecCCceEEEEEECC--CCCC----HHHHHHHHHHCCeEEEechhhCCCCCCCC
Confidence 566667777777777665 55677777777765 5555553 2111 123556788999999874 25
Q ss_pred EEEEeCCcccCHHHHHHHHHhhhcccccHH
Q psy8199 620 TVYLMPPYILNKNEIQHMTSAIFQTFNELD 649 (965)
Q Consensus 620 ~lR~~p~~~~t~~~i~~~~~~l~~~~~~~~ 649 (965)
++|++.. ..++++++++++++.+.+.+..
T Consensus 386 ~iRls~~-~~~~e~l~~a~~rL~~~l~~~~ 414 (420)
T d1vp4a_ 386 SMRLSFC-LPPDEKIVEGIKRLREVVLEYG 414 (420)
T ss_dssp EEEEECS-SSCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeC-cCCHHHHHHHHHHHHHHHHHhh
Confidence 8999932 3578889999999887665543
|
| >d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Multiple substrate aminotransferase, MSAT species: Thermococcus profundus [TaxId: 49899]
Probab=99.80 E-value=1e-18 Score=196.08 Aligned_cols=347 Identities=13% Similarity=0.057 Sum_probs=214.7
Q ss_pred CCcccccccccchhccCCCCCHHHHHHHHHHHhhc----cccccCCCCcHHHHHHHHHHHhhcC--CCCCeEEEcCChhH
Q psy8199 252 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKL----EHVMLSNLTHKPVIKLSEKLSSLTQ--YKLGHCFYGSDGAS 325 (965)
Q Consensus 252 dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~----~~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~~~sGse 325 (965)
++..+||+..|..... -...+.+.+++.+.++.. ..|....+..+.+..+++.+.+..+ .+.++|++|+|+++
T Consensus 27 ~~~~~i~l~~G~P~~~-~~P~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lR~aia~~l~~~~g~~~~~~~I~it~G~~~ 105 (403)
T d1wsta1 27 ETSDVISLAGGLPAPE-TFPVETIKKIAVEVLEEHADKALQYGTTKGFTPLRLALARWMEKRYDIPMSKVEIMTVAGSQQ 105 (403)
T ss_dssp TSSSCEECCCCCCCGG-GSCHHHHHHHHHHHHHHSHHHHHSCCCSSCCHHHHHHHHHHHHHHHCCCCTTCEEEEESSHHH
T ss_pred CCCCcEECCCCCCCcc-ccCHHHHHHHHHHHHHhCcccccCCCCCcCCHHHHHHHHHHHHHHhCCCCChHHeeecccchH
Confidence 3456788876643211 112345666777666442 2244455667788888888887665 35689999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHH
Q psy8199 326 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIAR 405 (965)
Q Consensus 326 A~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (965)
|+..++++... +++.|++.+++|..+.......+. ....+|...... ...
T Consensus 106 al~~~~~~l~~--------~gd~v~~~~P~y~~~~~~~~~~g~-------------~~~~v~~~~~~~---------~~~ 155 (403)
T d1wsta1 106 ALDLIGRVFLN--------PGDPIVVEAPTYLAAIQAFKYYDP-------------EFISIPLDDKGM---------RVD 155 (403)
T ss_dssp HHHHHHHHHCC--------TTCEEEEEESCCHHHHHHHHTTCC-------------EEEEEEEETTEE---------CHH
T ss_pred HHHHHHHHHhh--------cCCccccCCCcchhhhHHHhhccc-------------cceeEeecccCC---------ccc
Confidence 99999987642 568899999999887544333322 222333211100 001
Q ss_pred HHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccc-cccccC---
Q psy8199 406 CAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFF-ACEHAE--- 481 (965)
Q Consensus 406 ~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~-~~~~~~--- 481 (965)
......++...+......++++.+ ++|++|.+. +.+.+++|.++|++||+++|.||+|..|...|... +....+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~-p~NPtG~~~-s~~~l~~i~~~a~~~~~~li~De~y~~l~~~~~~~~~~~~~~~~~ 233 (403)
T d1wsta1 156 LLEEKLEELRKQGKRVKIVYTVST-FQNPAGVTM-SVDRRKKLLELANEYDFLIVEDGPYSELRYSGEPTPPIKHFDDYG 233 (403)
T ss_dssp HHHHHHHHHHHTTCCCCEEEECCS-SCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGGCSSS
T ss_pred cccccchhhhhccccccccccccc-cCCCCCccC-CHHHHHHHHHHHHhcCceeccccchhheecCCCCCCcccccCCCC
Confidence 122233333333344455555554 588888766 77889999999999999999999998876555422 222222
Q ss_pred CCcceeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcc----cHHHHHHHH
Q psy8199 482 IWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKD----NILQRISQD 557 (965)
Q Consensus 482 ~~pDivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~----~~~~~~~~~ 557 (965)
...-+-++||.++.| +++|++++++++++.+.. .....+...++..+.+..+.+.....+ ...+..+.+
T Consensus 234 ~~i~~~S~SK~~~~G-~RiG~~i~~~~~i~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (403)
T d1wsta1 234 RVIYLGTFSKILAPG-FRIGWVAAHPHLIRKMEI------AKQSIDLCTNTFGQAIAWKYVENGYLDEHIPKIIEFYKPR 306 (403)
T ss_dssp CEEEEEESTTTTCGG-GCCEEEEECHHHHHHHHH------HHHHHHSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred cEEEEccccceecCc-ccccccccchHHHHHHHH------HHhhhccccccchhhhHHhhhhccccchhHHHHHHHHHHH
Confidence 112223689988766 899999999999887754 122334455666666665555432222 234444455
Q ss_pred HHHHHHHHHcccCCCceeeeece-eEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec---------CCEEEEeCCc
Q psy8199 558 MKKITKALTSLITHPKIINFRQK-GMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI---------GNTVYLMPPY 627 (965)
Q Consensus 558 ~~~l~~~L~~l~~~~~i~~v~g~-G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~---------~~~lR~~p~~ 627 (965)
.+.+.+.|.+... .++....+. |.++++++. ++.. ...+.+.|.++||++.|+ .+++||+..
T Consensus 307 ~~~~~~~L~~~~~-~~~~~~~p~gg~~~~~~~~--~~~~----~~~~~~~l~~~gV~v~pg~~f~~~~~~~~~iRi~~~- 378 (403)
T d1wsta1 307 RDAMLEALEEYMP-EGVEWTKPEGGMFVRVTLP--EGID----TKLMMERAVAKGVAYVPGEAFFVHRDKKNTMRLNFT- 378 (403)
T ss_dssp HHHHHHHHHHHCC-TTCEECCCSBSSEEEEECC--TTCC----TTTTHHHHHHTTEECEEGGGGSTTCCCCSEEEEECS-
T ss_pred HHHHHHHHHhhcc-CCeEEeCCCceeEEEEECC--CCCC----HHHHHHHHHHCCEEEEechhhcCCCCCCCEEEEEec-
Confidence 5555555554311 234444445 455556554 2111 224667888999999874 268999943
Q ss_pred ccCHHHHHHHHHhhhcccc
Q psy8199 628 ILNKNEIQHMTSAIFQTFN 646 (965)
Q Consensus 628 ~~t~~~i~~~~~~l~~~~~ 646 (965)
..++++++++++++.+++.
T Consensus 379 ~~~~~~l~~al~rl~~~l~ 397 (403)
T d1wsta1 379 YVPEETIREGVRRLAETIK 397 (403)
T ss_dssp SSCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHH
Confidence 2588999999999887654
|
| >d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: AAT homologue TM1698 species: Thermotoga maritima [TaxId: 2336]
Probab=99.79 E-value=9.2e-19 Score=195.42 Aligned_cols=336 Identities=12% Similarity=0.100 Sum_probs=213.8
Q ss_pred cCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCC--CCCeEEEcCChhHHHH
Q psy8199 251 FSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQY--KLGHCFYGSDGASAVE 328 (965)
Q Consensus 251 ~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~--~~~~v~~~~sGseA~~ 328 (965)
..|+.+||+..|... |. .++.+.+|+.++......|....+..+.++.+++.+.+..+. +.++|++|+|+++++.
T Consensus 25 ~~g~~vi~l~~G~p~--~~-~p~~~~~al~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~G~~~~l~ 101 (389)
T d2gb3a1 25 KRGVRIHHLNIGQPD--LK-TPEVFFERIYENKPEVVYYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAIL 101 (389)
T ss_dssp HTTCEEEECSSCCCC--SC-CCTHHHHHHHHTCCSSCCCCCTTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHHH
T ss_pred HcCCCEEECCCCCCC--CC-CCHHHHHHHHhcCCCCCCCCCCcCCHHHHHHHHHHHHHhcCCCcccceEEeccccccccc
Confidence 468889999877542 22 367788999876665555665666778888999999887653 4679999999999999
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHH
Q psy8199 329 VALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAI 408 (965)
Q Consensus 329 ~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 408 (965)
.++++... +++.|++.+++|..+.......+. ....++........ +.
T Consensus 102 ~~~~~l~~--------~gd~V~i~~P~y~~~~~~~~~~g~-------------~~~~~~~~~~~~~~-----------~~ 149 (389)
T d2gb3a1 102 FSFAVIAN--------PGDEILVLEPFYANYNAFAKIAGV-------------KLIPVTRRMEEGFA-----------IP 149 (389)
T ss_dssp HHHHHHCC--------TTCEEEEEESCCTHHHHHHHHHTC-------------EEEEEECCGGGTSC-----------CC
T ss_pred cccccccc--------CCCeEEEeCCCCccccccccccCc-------------cccccccccccccc-----------hh
Confidence 99887743 567899999999877433333222 12222222111111 01
Q ss_pred HHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCccee-
Q psy8199 409 FDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL- 487 (965)
Q Consensus 409 ~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDiv- 487 (965)
+.+.. ...+++.++++.. ++|++|.+. +.+.+++|.++|++||+++|.||+|..+...+........ ..+.++
T Consensus 150 ~~~~~---~~~~~~~~~~l~n-P~NPtG~~~-s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~-~~~~~~v 223 (389)
T d2gb3a1 150 QNLES---FINERTKGIVLSN-PCNPTGVVY-GKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASALSI-ESDKVVV 223 (389)
T ss_dssp TTGGG---GCCTTEEEEEEES-SCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGS-CCTTEEE
T ss_pred hhhhh---hcccCccEEEeCC-CCccccccc-hHHHHHHHHhhcccCCEEEEEecccccccccccccccccc-ccccccc
Confidence 11111 2244565555554 599999876 7888999999999999999999999888655543322222 222232
Q ss_pred --eeccccCCCcccceeeeecHH-HHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHH
Q psy8199 488 --CLSKGITGGYLPLSLVMTTDK-IYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK--DNILQRISQDMKKIT 562 (965)
Q Consensus 488 --t~sK~l~gG~~pig~v~~~~~-i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~--~~~~~~~~~~~~~l~ 562 (965)
++||.++..++++|+++++.+ +...+.. ...+..+.+++.+.++.+.+...+. +...+..+++.+.+.
T Consensus 224 ~~s~sK~~~~~GlRiG~~~~~~~~i~~~~~~-------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 296 (389)
T d2gb3a1 224 IDSVSKKFSACGARVGCLITRNEELISHAMK-------LAQGRLAPPLLEQIGSVGLLNLDDSFFDFVRETYRERVETVL 296 (389)
T ss_dssp EEESTTTTTCGGGCCEEEECSCHHHHHHHHH-------HHHHSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccCcccceeeeeccchhHHHHHhh-------hhhccccccccccccccccccccchhcccccccccccchhhh
Confidence 568977664499999998665 4443332 2334556677777777776642111 224455566666666
Q ss_pred HHHHcccCCCceeeeec-eeEEEEEEEeecCccchhhHHHHHHHHHHH------cCcEEeec----------CCEEEEeC
Q psy8199 563 KALTSLITHPKIINFRQ-KGMIWAFDVIIEDPEQIETFSKKFFVAALK------NELLLRPI----------GNTVYLMP 625 (965)
Q Consensus 563 ~~L~~l~~~~~i~~v~g-~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~------~Gi~~~~~----------~~~lR~~p 625 (965)
+.|+++ +....+.+ .|.++.+.+...+ ..++++.|++ +|+.+.|+ .+++||+
T Consensus 297 ~~L~~~---~~~~~~~p~~g~~~~~~lp~~~-------~~~~~~~ll~e~~l~~~~v~v~pg~~f~~~~~~~~~~iRis- 365 (389)
T d2gb3a1 297 KKLEEH---GLKRFTKPSGAFYITAELPVED-------AEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIA- 365 (389)
T ss_dssp HHHHHT---TCCCBCCCSBSSEEEEECSSSC-------HHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEE-
T ss_pred hhhhhh---ccccccCCCceEEEEEeCCCCC-------HHHHHHHHHHhhhhhhCCEEEEeCcccccCCCCCCCEEEEE-
Confidence 666654 33333343 4556666654111 3345555543 46776653 2589999
Q ss_pred CcccCHHHHHHHHHhhhcccc
Q psy8199 626 PYILNKNEIQHMTSAIFQTFN 646 (965)
Q Consensus 626 ~~~~t~~~i~~~~~~l~~~~~ 646 (965)
++.++++++++++++.+++.
T Consensus 366 -~~~~~~~l~~a~~~L~~~lk 385 (389)
T d2gb3a1 366 -CVLEKDLLSRAIDVLMEGLK 385 (389)
T ss_dssp -CCSCHHHHHHHHHHHHHHHH
T ss_pred -EcCCHHHHHHHHHHHHHHHH
Confidence 67888999988888776543
|
| >d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Thermotoga maritima [TaxId: 2336]
Probab=99.79 E-value=5.7e-18 Score=184.37 Aligned_cols=315 Identities=11% Similarity=0.052 Sum_probs=203.7
Q ss_pred EEecCCcccccccccchhccCCCCCHHHHHHHHHHHhhc--cccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhH
Q psy8199 248 LITFSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKL--EHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGAS 325 (965)
Q Consensus 248 ~~d~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~--~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGse 325 (965)
=++..++..+++..| .++++ .++.+.+++.+++... .++. ..+..++++.+++.+... +...++|++++|+++
T Consensus 13 ~~~~~~~d~~~l~~~--enp~~-~p~~i~~~~~~~~~~~~~~~yp-~~g~~~Lr~aia~~~~~~-~v~~d~I~it~G~~~ 87 (334)
T d2f8ja1 13 PYETEKRDKTYLALN--ENPFP-FPEDLVDEVFRRLNSDALRIYY-DSPDEELIEKILSYLDTD-FLSKNNVSVGNGADE 87 (334)
T ss_dssp CCCCCCCCSEECSSC--CCSSC-CCHHHHHHHHHHCCTTGGGSCC-CSSCHHHHHHHHHHHTCS-SCCGGGEEEEEHHHH
T ss_pred cccccCCCceEEECC--CCCCC-CCHHHHHHHHHHhhcchhcCCC-CCCcHHHHHHHHHHhccc-CCCcceEEecCcchh
Confidence 345567888887655 46676 4789999999888653 2232 233444555555555433 246778999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHH
Q psy8199 326 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIAR 405 (965)
Q Consensus 326 A~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (965)
|+..+++. .++|++.+++|.++.......+. ..+.+|........
T Consensus 88 ~l~~l~~~------------~d~v~i~~P~y~~~~~~~~~~g~-------------~~v~v~~~~~~~~~---------- 132 (334)
T d2f8ja1 88 IIYVMMLM------------FDRSVFFPPTYSCYRIFAKAVGA-------------KFLEVPLTKDLRIP---------- 132 (334)
T ss_dssp HHHHHHHH------------SSEEEECSSCCHHHHHHHHHHTC-------------CEEECCCCTTSCCC----------
T ss_pred HHHHHhhh------------ccccccccccccccccchhccCC-------------cccccccccccccc----------
Confidence 88765431 26799999999887444333322 33444433211111
Q ss_pred HHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcc
Q psy8199 406 CAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPD 485 (965)
Q Consensus 406 ~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pD 485 (965)
+ +. .......++++| +|++|.+.+ .+ .|.++ .++++++|.||++.++........ ....+.
T Consensus 133 ------~-~~--~~~~~~l~l~nP--~NPtG~~~s-~~---~l~~~-~~~~~~ii~Dd~~~~~~~~~~~~~---~~~~~~ 193 (334)
T d2f8ja1 133 ------E-VN--VGEGDVVFIPNP--NNPTGHVFE-RE---EIERI-LKTGAFVALDEAYYEFHGESYVDF---LKKYEN 193 (334)
T ss_dssp ------C-CC--CCTTEEEEEESS--CTTTCCCCC-HH---HHHHH-HTTTCEEEEECTTGGGTCCCCGGG---GGTCSS
T ss_pred ------c-cc--cccceEEEeccc--ccccceeec-HH---Hhhcc-ccceeEEeecccchhhcccccccc---cccCce
Confidence 0 00 122334556666 899998875 33 34443 567999999999875532222111 112233
Q ss_pred ee---eeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHH
Q psy8199 486 FL---CLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK-DNILQRISQDMKKI 561 (965)
Q Consensus 486 iv---t~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~-~~~~~~~~~~~~~l 561 (965)
++ +|||.++..++++|++++++++++.+.. ...+++.+..++.++.+.++..+. +...+.++++.+++
T Consensus 194 ~i~~~S~SK~~~~~G~R~G~~~~~~~~i~~l~~--------~~~~~~~s~~~~~~a~~~l~~~~~~~~~~~~~~~~r~~l 265 (334)
T d2f8ja1 194 LAVIRTFSKAFSLAAQRVGYVVASEKFIDAYNR--------VRLPFNVSYVSQMFAKVALDHREIFEERTKFIVEERERM 265 (334)
T ss_dssp EEEEEESTTTSSCTTTCEEEEEECHHHHHHHHH--------HSCTTCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred EEEEecCccccchhhhhhhhcccchHHHHHHHH--------hhcccccchhhhhhcccccccccchhhHHHHHHHHHHHH
Confidence 33 6899876433899999999999998865 123456688888888887764221 23456667777778
Q ss_pred HHHHHcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecCCEEEEeCCcccCHHHHHHHHHhh
Q psy8199 562 TKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAI 641 (965)
Q Consensus 562 ~~~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~lR~~p~~~~t~~~i~~~~~~l 641 (965)
.+.|+++ ++...++.|.|+.+.+. ......+.+.|.++||++++..+++|++ ..+.++++++++++
T Consensus 266 ~~~L~~~----g~~~~~~~g~f~~~~~~-------~~~~~~~~~~L~~~GI~vr~~~~~vRis---~g~~ee~~~l~~~l 331 (334)
T d2f8ja1 266 KSALREM----GYRITDSRGNFVFVFME-------KEEKERLLEHLRTKNVAVRSFREGVRIT---IGKREENDMILREL 331 (334)
T ss_dssp HHHHHHH----TCEECCCCSSEEEEECC-------HHHHHHHHHHHHHTTEECEEETTEEEEE---CCCHHHHHHHHHHH
T ss_pred HHHHHHC----CCeECCCCceEEEEECC-------CCCHHHHHHHHHHCCCEECCCCCeEEEE---cCCHHHHHHHHHHH
Confidence 8887776 45566778887766553 1224578889999999999988999999 45788888888876
Q ss_pred hc
Q psy8199 642 FQ 643 (965)
Q Consensus 642 ~~ 643 (965)
++
T Consensus 332 ~~ 333 (334)
T d2f8ja1 332 EV 333 (334)
T ss_dssp HH
T ss_pred hc
Confidence 53
|
| >d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Modulator in mal gene expression, MalY species: Escherichia coli [TaxId: 562]
Probab=99.79 E-value=8.4e-18 Score=185.47 Aligned_cols=325 Identities=12% Similarity=0.071 Sum_probs=195.9
Q ss_pred CCHHHHHHHHHHHhhc-cccccCCCCcHHHHHHHHHHHhhcCC--CCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCce
Q psy8199 271 SNSYINKALKNQLNKL-EHVMLSNLTHKPVIKLSEKLSSLTQY--KLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKK 347 (965)
Q Consensus 271 ~~p~v~~av~~~~~~~-~~~~~~~~~~~~~~~la~~l~~~~~~--~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~ 347 (965)
.+|.|.+|+.+.++.. ..|....+ .+.++.+++.+.+.++. +.++|++|+|+++|+..++..... +++
T Consensus 13 ~p~~i~eal~~~~~~~~~~Y~~~~g-~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~~l~~~~~~l~~--------~gd 83 (361)
T d1d2fa_ 13 TAPCIIEALNQRLMHGVFGYSRWKN-DEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQWSE--------TGE 83 (361)
T ss_dssp CCHHHHHHHHHHHTTCCCCCCCSCC-HHHHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHHHHHSSC--------TTC
T ss_pred CCHHHHHHHHHHHhCCCCCCCCCCC-HHHHHHHHHHHHHHhCCCCCcceEEEeCCHHHHHHHHhhhccc--------ccc
Confidence 5799999999988763 22333334 46778888888877653 457999999999999988887632 567
Q ss_pred EEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCC--CCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEE
Q psy8199 348 KFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTP--DSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAI 425 (965)
Q Consensus 348 ~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aai 425 (965)
+|++.+++|.++.......+. ..+.++.. ..... .|++.+++.+. ..+++++
T Consensus 84 ~Vlv~~P~y~~~~~~~~~~g~-------------~~~~v~~~~~~~~~~-----------~d~~~~~~~~~--~~~~~~i 137 (361)
T d1d2fa_ 84 GVVIHTPAYDAFYKAIEGNQR-------------TVMPVALEKQADGWF-----------CDMGKLEAVLA--KPECKIM 137 (361)
T ss_dssp EEEEEESCCHHHHHHHHHTTC-------------EEEEEECEECSSSEE-----------CCHHHHHHHHT--STTEEEE
T ss_pred ccccccccccchhHHHHhhcc-------------eEEeecccccccccc-----------cccccchhhcc--cCCceeE
Confidence 899999999777432222221 11222211 00011 25778888775 3456666
Q ss_pred EEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCccee---eeccccCCCccccee
Q psy8199 426 IIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL---CLSKGITGGYLPLSL 502 (965)
Q Consensus 426 i~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDiv---t~sK~l~gG~~pig~ 502 (965)
++.+ ++|++|.+. +.+.+++|.++|+++|+++|+||+|.+|-+.+.....-......+.+ ++||.++-+++++|+
T Consensus 138 ~l~~-p~NPTG~~~-s~~~~~~i~~~~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~v~~~s~SK~~~~~g~R~g~ 215 (361)
T d1d2fa_ 138 LLCS-PQNPTGKVW-TCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNVARGDWALLTSGSKSFNIPALTGAY 215 (361)
T ss_dssp EEES-SCTTTCCCC-CTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGTCCSSEEEEECSHHHHTCGGGCCEE
T ss_pred Eecc-ccccccccc-chhhhhhhhhhhhhhheeeeeccccccccccccccccccccccccccccccccccccccccccee
Confidence 6655 699999766 67779999999999999999999999874444322111111123333 468866532389998
Q ss_pred eeecH-HHHHhhhccCCccccc-ccCCCCCCHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHcccCCCceeeee
Q psy8199 503 VMTTD-KIYNSIYYKNNINIFL-HSHSYSGNPLACCAALATLEIFNK--DNILQRISQDMKKITKALTSLITHPKIINFR 578 (965)
Q Consensus 503 v~~~~-~i~~~~~~~~~~~~~~-~~~t~~~~~~~~aaa~a~L~~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~ 578 (965)
+.... ...+..... .. ..+..+.+..++++++.+++.... +......+++.+.+.+.+.+. .+++....
T Consensus 216 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~--~~~~~~~~ 288 (361)
T d1d2fa_ 216 GIIENSSSRDAYLSA-----LKGRDGLSSPSVLALTAHIAAYQQGAPWLDALRIYLKDNLTYIADKMNAA--FPELNWQI 288 (361)
T ss_dssp EEECSHHHHHHHHHH-----HHTTSCCCSCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH--CSSCCCCC
T ss_pred eecchhHHHHHHhhh-----cccccccccchhhhHHHHHHHhhccchhhhcccccchhhHHHHHHHhhhh--cccccccc
Confidence 76543 222222210 11 112223345556665555543221 123344444444454444332 23444445
Q ss_pred ceeE-EEEEEEeecCccchhhHHHHHHHHHHH-cCcEEeec-------CCEEEEeCCcccCHHHHHHHHHhhhcccc
Q psy8199 579 QKGM-IWAFDVIIEDPEQIETFSKKFFVAALK-NELLLRPI-------GNTVYLMPPYILNKNEIQHMTSAIFQTFN 646 (965)
Q Consensus 579 g~G~-~~~i~~~~~~~~~~~~~~~~~~~~l~~-~Gi~~~~~-------~~~lR~~p~~~~t~~~i~~~~~~l~~~~~ 646 (965)
++|. ++++++. ... .....++.+|++ .||.+.|+ .+++|++ +..++++++++++++.+++.
T Consensus 289 p~gg~~~~~~l~-~~~----~~~~~~~~~Ll~~~gv~v~pG~~F~~~~~~~vRis--~~~~~e~l~~al~rl~~~l~ 358 (361)
T d1d2fa_ 289 PQSTYLAWLDLR-PLN----IDDNALQKALIEQEKVAIMPGYTYGEEGRGFVRLN--AGCPRSKLEKGVAGLINAIR 358 (361)
T ss_dssp CSBCSEEEEECG-GGC----CCHHHHHHHHHHTTCEECEEGGGGCGGGTTEEEEE--CCSCHHHHHHHHHHHHHHHH
T ss_pred cCceeEEEEEcc-CCC----CCHHHHHHHHHHhCCEEEEeccccCCCCCCEEEEE--EcCCHHHHHHHHHHHHHHHH
Confidence 5554 4455553 111 113456677654 59999873 2689999 56788999999888876654
|
| >d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystine C-S lyase C-des species: Synechocystis sp. [TaxId: 1143]
Probab=99.79 E-value=2.2e-18 Score=191.84 Aligned_cols=341 Identities=13% Similarity=0.118 Sum_probs=215.4
Q ss_pred CCcccccccccchhccCCCCCHHHHHHHHHHHhhcccc-----ccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHH
Q psy8199 252 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHV-----MLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASA 326 (965)
Q Consensus 252 dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~-----~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA 326 (965)
+++.|||..+ .|..+..|++|+.+.++..... .......+...++.+.++++++.+.++|+|++|||+|
T Consensus 6 ~~~~yld~~~------~~~~p~~v~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~i~~~~g~t~a 79 (381)
T d1elua_ 6 ANKTYFNFGG------QGILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFNVDPNTITITDNVTTG 79 (381)
T ss_dssp TTSEECCTTT------CCCCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTTSCGGGEEEESSHHHH
T ss_pred CCCEEeeCCc------ccCCCHHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHHHHhCCCcccEEEECChHHH
Confidence 4567999654 4556788999998887653111 1111223445667778999998778899999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHH
Q psy8199 327 VEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARC 406 (965)
Q Consensus 327 ~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (965)
+..++..... .+++.|++.+..|++.......+ .......+..+|.+...... .
T Consensus 80 ~~~~~~~l~~-------~~g~~i~~~~~~~~s~~~~~~~~---------~~~~g~~~~~v~~~~~~~~~----------~ 133 (381)
T d1elua_ 80 CDIVLWGLDW-------HQGDEILLTDCEHPGIIAIVQAI---------AARFGITYRFFPVAATLNQG----------D 133 (381)
T ss_dssp HHHHHHHSCC-------CTTCEEEEETTCCHHHHHHHHHH---------HHHHCCEEEEECCGGGSSSS----------C
T ss_pred hhhcchhhhh-------cCCceEEEeccccceeeeccccc---------cccccccccccccccccccc----------h
Confidence 9998875522 36778888887775532111111 01111233444433211110 1
Q ss_pred HHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhc----CCeEEEeccccCCCcccccccccccCC
Q psy8199 407 AIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNY----NIHLIADEIAVGCGRTGKFFACEHAEI 482 (965)
Q Consensus 407 d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~----g~llI~DEv~tg~gr~G~~~~~~~~~~ 482 (965)
..+.+++++ ..++.+|++.. +++++|.+.| +++|.++|++| ++++++|.+|+ +|.. .......
T Consensus 134 ~~~~l~~~i---~~~t~~v~i~~-~~n~tG~~~~----~~~I~~l~~~~~~~~~~~~~vD~~~~-~g~~----~~~~~~~ 200 (381)
T d1elua_ 134 AAAVLANHL---GPKTRLVILSH-LLWNTGQVLP----LAEIMAVCRRHQGNYPVRVLVDGAQS-AGSL----PLDFSRL 200 (381)
T ss_dssp HHHHHHTTC---CTTEEEEEEES-BCTTTCCBCC----HHHHHHHHHHCCSSSCCEEEEECTTT-BTTB----CCCTTTS
T ss_pred HHHHHHhhh---ccccccccccc-ccccccccch----hhHHHHHHhhcccccccccccccccc-cccc----ccccccc
Confidence 233444333 56788888888 8999999998 88999999985 69999999985 5432 2333344
Q ss_pred Ccceeeec--cccCCCcccceeeeecHHHHHhhhccC-Cccccc-----c----------cCCCCCCHHHHHHHHHHHHH
Q psy8199 483 WPDFLCLS--KGITGGYLPLSLVMTTDKIYNSIYYKN-NINIFL-----H----------SHSYSGNPLACCAALATLEI 544 (965)
Q Consensus 483 ~pDivt~s--K~l~gG~~pig~v~~~~~i~~~~~~~~-~~~~~~-----~----------~~t~~~~~~~~aaa~a~L~~ 544 (965)
.+|++++| |.+++. .++|++..+++..+.+.... .+.... . ....+.+.....+..++++.
T Consensus 201 ~~D~~~~s~~K~~~~p-~G~g~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~~a~~~ 279 (381)
T d1elua_ 201 EVDYYAFTGHKWFAGP-AGVGGLYIHGDCLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQL 279 (381)
T ss_dssp CCSEEEEESSSTTCCC-TTCEEEEECTTTGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHH
T ss_pred cccccccccccccccc-chhhHHHhhHHHHHhcCcccccccccccccccccccccccccccccccccchhhhhhhhhhhh
Confidence 68888765 888765 47788888888776553210 000000 0 00112345566666677776
Q ss_pred Hhcc----cHHHHHHHHHHHHHHHHHcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecC--
Q psy8199 545 FNKD----NILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG-- 618 (965)
Q Consensus 545 ~~~~----~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~-- 618 (965)
+... ...++.+++.+++.++|+++.....+.....++.++.|.+. +. ...+.+.+.|.++||.++..+
T Consensus 280 ~~~~g~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~vsf~~~--~~----~~~~~i~~~L~~~gi~v~~~~~~ 353 (381)
T d1elua_ 280 HQRQGTAEERYQAICQRSEFLWRGLNQLPHVHCLATSAPQAGLVSFTVD--SP----LGHRAIVQKLEEQRIYLRTIADP 353 (381)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHHHHHHSTTEEESCSSCCSSSEEEEEEC--SS----SCHHHHHHHHHHTTEECEEETTT
T ss_pred HHHhcccccchhhhhhHHHHHHHHHhcCCCeEecCCCCccccEEEEEcC--CC----CCHHHHHHHHHhCCcEEEecCCC
Confidence 5432 23567777888888888776221112222345667777664 11 113457788999999887543
Q ss_pred CEEEEeCCcccCHHHHHHHHHhhhcc
Q psy8199 619 NTVYLMPPYILNKNEIQHMTSAIFQT 644 (965)
Q Consensus 619 ~~lR~~p~~~~t~~~i~~~~~~l~~~ 644 (965)
+++|+++++..|.+|++++++.+++.
T Consensus 354 ~~lRis~~~~nt~edid~ll~~l~e~ 379 (381)
T d1elua_ 354 DCIRACCHYITDEEEINHLLARLADF 379 (381)
T ss_dssp TEEEEECCTTCCHHHHHHHHHHHTTC
T ss_pred CEEEEecCCCCCHHHHHHHHHHHHhh
Confidence 79999999999999999999988753
|
| >d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative methionine aminotransferase YdbL species: Escherichia coli [TaxId: 562]
Probab=99.78 E-value=1.1e-17 Score=185.71 Aligned_cols=338 Identities=11% Similarity=0.086 Sum_probs=218.6
Q ss_pred CCcccccccccchhccCCCCCHHHHHHHHHHHhhc-cccccCCCCcHHHHHHHHHHHhhcCCC--CC-eEEEcCChhHHH
Q psy8199 252 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKL-EHVMLSNLTHKPVIKLSEKLSSLTQYK--LG-HCFYGSDGASAV 327 (965)
Q Consensus 252 dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~-~~~~~~~~~~~~~~~la~~l~~~~~~~--~~-~v~~~~sGseA~ 327 (965)
.++..||+..|.. .+. .++.+.+|+.+++++. ..|....+..+.++.+++.+.+..+.. .+ ++++|+|+++|+
T Consensus 24 ~~~~~i~l~~G~P--d~~-~p~~i~~a~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~~I~vt~G~~~al 100 (382)
T d1u08a_ 24 QQHQAINLSQGFP--DFD-GPRYLQERLAHHVAQGANQYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEAL 100 (382)
T ss_dssp HHTTCEECCCSSC--SSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHH
T ss_pred ccCCCEEccCCCC--CCC-CCHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHHHhCCCCCCCceEEeccchHHHH
Confidence 4567799888754 233 4788999999988764 235556667788899999998876643 34 599999999999
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHH
Q psy8199 328 EVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCA 407 (965)
Q Consensus 328 ~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 407 (965)
..++++... +++.|++.+++|+.+.......+. ....++.+..... .|
T Consensus 101 ~~~~~~l~~--------~gd~vl~~~p~y~~~~~~~~~~g~-------------~~~~~~~~~~~~~-----------~d 148 (382)
T d1u08a_ 101 YAAITALVR--------NGDEVICFDPSYDSYAPAIALSGG-------------IVKRMALQPPHFR-----------VD 148 (382)
T ss_dssp HHHHHHHCC--------TTCEEEEEESCCTTHHHHHHHTTC-------------EEEEEECCTTTCC-----------CC
T ss_pred HHHHhhccc--------ccceEEEecccccchhhhhhhccc-------------cceeccccccccc-----------CC
Confidence 999987743 678899999999887443333222 1222233222221 25
Q ss_pred HHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccc-ccc-CCCcc
Q psy8199 408 IFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFAC-EHA-EIWPD 485 (965)
Q Consensus 408 ~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~-~~~-~~~pD 485 (965)
++++++.+. .++.++++.+ ++|++|.+. +.+.+++|.++|++++++++.||++.-+...+..... ... +....
T Consensus 149 ~~~l~~~~~---~~~~~i~l~~-P~NPtG~v~-~~~~~~~l~~~~~~~~~~ii~d~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (382)
T d1u08a_ 149 WQEFAALLS---ERTRLVILNT-PHNPSATVW-QQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRER 223 (382)
T ss_dssp HHHHHHHCC---TTEEEEEEES-SCTTTCCCC-CHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTT
T ss_pred HHHHhhhhc---cCccEEEECC-CCccccccc-ccccchhhhhhhccccceeeeecchhhccccccccccccccccccCc
Confidence 677776653 4555555554 489999876 7777999999999999999999999755333221111 111 11112
Q ss_pred ---eeeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Q psy8199 486 ---FLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKIT 562 (965)
Q Consensus 486 ---ivt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~ 562 (965)
+.++||.++-.++++|++++++++++.+.. .....+++.+.+++.++.++|+.- ++..+.+++.-+..+
T Consensus 224 ~i~~~s~SK~~~~pG~RiG~~v~~~~~~~~~~~------~~~~~~~~~~~~~q~a~~~~l~~~--~~~~~~~~~~~~~~~ 295 (382)
T d1u08a_ 224 AVAVSSFGKTYHMTGWKVGYCVAPAPISAEIRK------VHQYLTFSVNTPAQLALADMLRAE--PEHYLALPDFYRQKR 295 (382)
T ss_dssp EEEEEEHHHHTTCGGGCCEEEECCHHHHHHHHH------HHHHHTSSCCHHHHHHHHHHHHHC--THHHHTHHHHHHHHH
T ss_pred EEEEeeccccccCCcccchhhhccchhHHHHHh------hhcccccccccccccccccccccc--hHHHHHHHHHHHhhh
Confidence 235799775322899999999999887755 233456778889999998888643 223333333333333
Q ss_pred HHHHcccCCCceeeeeceeEEEE-EEEeecCccchhhHHHHHHHHH-HHcCcEEeec---------CCEEEEeCCcccCH
Q psy8199 563 KALTSLITHPKIINFRQKGMIWA-FDVIIEDPEQIETFSKKFFVAA-LKNELLLRPI---------GNTVYLMPPYILNK 631 (965)
Q Consensus 563 ~~L~~l~~~~~i~~v~g~G~~~~-i~~~~~~~~~~~~~~~~~~~~l-~~~Gi~~~~~---------~~~lR~~p~~~~t~ 631 (965)
+.|.+..+..++..+.+.|.|+. +.+. ... .....+++++| .++||.+.|+ .+++||+ +..++
T Consensus 296 ~~l~~~~~~~g~~~~~p~gg~~~~~~~~--~~~--~~d~~e~~~~ll~e~gV~v~PG~~F~~~~~~~~~~Ris--~~~~~ 369 (382)
T d1u08a_ 296 DILVNALNESRLEILPCEGTYFLLVDYS--AVS--TLDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLC--FAKKE 369 (382)
T ss_dssp HHHHHHTTSSSCEECCCCBSSEEEEECT--TTC--CSCHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEE--CCSCH
T ss_pred hhhhhhhccCCcEEecCCceEEEEEecC--CCC--CCCHHHHHHHHHHHCCEEEEcchhhCCCCCCCCEEEEE--EeCCH
Confidence 33333223345666777766544 4442 100 01133465655 5779999874 1589999 66789
Q ss_pred HHHHHHHHhhhc
Q psy8199 632 NEIQHMTSAIFQ 643 (965)
Q Consensus 632 ~~i~~~~~~l~~ 643 (965)
++++++++++++
T Consensus 370 e~l~~al~RL~~ 381 (382)
T d1u08a_ 370 STLLAAAERLRQ 381 (382)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHhC
Confidence 999999988764
|
| >d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Escherichia coli [TaxId: 562]
Probab=99.75 E-value=1.7e-17 Score=182.21 Aligned_cols=287 Identities=12% Similarity=0.133 Sum_probs=187.4
Q ss_pred CCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCc
Q psy8199 293 NLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSF 372 (965)
Q Consensus 293 ~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~ 372 (965)
.|+.+...+|.+.+++.++.++++|++++|+++|+..++++... +++..|++.+++|..+...+...+.
T Consensus 52 rYPd~~~~~Lr~~ia~~~gv~pe~I~it~Gs~eai~~~~~~~~~-------pgd~~Vl~~~P~y~~~~~~~~~~g~---- 120 (354)
T d1fg7a_ 52 RYPECQPKAVIENYAQYAGVKPEQVLVSRGADEGIELLIRAFCE-------PGKDAILYCPPTYGMYSVSAETIGV---- 120 (354)
T ss_dssp SCCCSSCHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHHCC-------TTTCEEEECSSSCTHHHHHHHHHTC----
T ss_pred cCCCCcHHHHHHHHHHHhCCChHHeeeccCchHHHHHHHHHhhc-------cccccccccccccccchhhhhccCc----
Confidence 34444456888899999988889999999999999999997743 3445788889999877544333322
Q ss_pred cchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHH
Q psy8199 373 KEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREIC 452 (965)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~ 452 (965)
.+..++..+... .|+++++..+ .++.+|++.+ .+|++|.+. +.+.++.+.+.|
T Consensus 121 ---------~v~~~~~~~~~~------------~d~~~l~~~~----~~~~~v~~~~-pnNPtG~~~-~~~~~~~~~~~~ 173 (354)
T d1fg7a_ 121 ---------ECRTVPTLDNWQ------------LDLQGISDKL----DGVKVVYVCS-PNNPTGQLI-NPQDFRTLLELT 173 (354)
T ss_dssp ---------EEEECCCCTTSC------------CCHHHHHTSC----TTEEEEEEES-SCTTTCCCC-CHHHHHHHHHHH
T ss_pred ---------eeeccccccccc------------cchhhhhhcc----cccceeeccC-CCccceeEe-eecccccccccc
Confidence 223333322111 2566665543 3456666666 688888776 677788887776
Q ss_pred HhcCCeEEEeccccCCCcccccccccccCCCccee---eeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCC
Q psy8199 453 NNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL---CLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYS 529 (965)
Q Consensus 453 ~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDiv---t~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~ 529 (965)
+ ++.++|+||.+..|..... ........++++ +|||.++-+++++|++++++++++.+.. ....++
T Consensus 174 ~-~~~~~iidd~~~~f~~~~~--~~~~~~~~~~~iv~~S~SK~~~laGlRiGy~i~~~~~i~~l~~--------~~~~~~ 242 (354)
T d1fg7a_ 174 R-GKAIVVADEAYIEFCPQAS--LAGWLAEYPHLAILRTLSKAFALAGLRCGFTLANEEVINLLMK--------VIAPYP 242 (354)
T ss_dssp T-TTCEEEEECTTGGGSGGGC--SGGGTTTCTTEEEEEESSSTTCCGGGCCEEEEECHHHHHHHHH--------HSCSSC
T ss_pred c-ccccccccccchhhccccc--cchhhcccccceEEeCCccccCCCccccccccccchhhhhhhh--------hcCccc
Confidence 6 5677888887766643221 112223345544 6899876322899999999999998865 123455
Q ss_pred CCHHHHHHHHHHHHHHhc---ccHHHHHHHHHHHHHHHHHcccCCCceeee-eceeEEEEEEEeecCccchhhHHHHHHH
Q psy8199 530 GNPLACCAALATLEIFNK---DNILQRISQDMKKITKALTSLITHPKIINF-RQKGMIWAFDVIIEDPEQIETFSKKFFV 605 (965)
Q Consensus 530 ~~~~~~aaa~a~L~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v-~g~G~~~~i~~~~~~~~~~~~~~~~~~~ 605 (965)
.+..++.++.+++..-.. ....+++.+..+++.+.+.++ +++..+ ++.|+|+.+.+. + ...+.+
T Consensus 243 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~---~~~~~~~p~~~~f~~~~~~--~-------~~~~~~ 310 (354)
T d1fg7a_ 243 LSTPVADIAAQALSPQGIVAMRERVAQIIAEREYLIAALKEI---PCVEQVFDSETNYILARFK--A-------SSAVFK 310 (354)
T ss_dssp SCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHS---TTEEEECCCSSSEEEEEET--T-------HHHHHH
T ss_pred hhhHHHHHHHHHHhhhccccccccchhhhhHHHHHHHHHHhC---CCcceeCCCCceEEEEeCC--C-------HHHHHH
Confidence 566666665555432111 122344555566666666554 555433 456777777663 2 345778
Q ss_pred HHHHcCcEEeecC------CEEEEeCCcccCHHHHHHHHHhhhc
Q psy8199 606 AALKNELLLRPIG------NTVYLMPPYILNKNEIQHMTSAIFQ 643 (965)
Q Consensus 606 ~l~~~Gi~~~~~~------~~lR~~p~~~~t~~~i~~~~~~l~~ 643 (965)
.|.++||++++.+ +++|++ ..++++.++++++++.
T Consensus 311 ~L~~~gIlvr~~~~~~~~~~~lRis---igt~ee~~~~l~aLka 351 (354)
T d1fg7a_ 311 SLWDQGIILRDQNKQPSLSGCLRIT---VGTREESQRVIDALRA 351 (354)
T ss_dssp HHHHTTEECEECTTSTTCTTEEEEE---CCCHHHHHHHHHHHHT
T ss_pred HHHHCCcEEecCCCCCCCCCEEEEE---eCCHHHHHHHHHHHhh
Confidence 8999999998742 799999 4588889999888763
|
| >d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Tomato (Lycopersicon esculentum) [TaxId: 4081]
Probab=99.73 E-value=3e-17 Score=184.98 Aligned_cols=313 Identities=15% Similarity=0.072 Sum_probs=183.6
Q ss_pred ccccCCCCcHHHHHHHHHHHhhcC----CCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCcccc
Q psy8199 288 HVMLSNLTHKPVIKLSEKLSSLTQ----YKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGA 363 (965)
Q Consensus 288 ~~~~~~~~~~~~~~la~~l~~~~~----~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~ 363 (965)
.|....+..+++..+|+.+.+..+ .+.++|++|+|+++|+..++++... +++.|++.+++|+++....
T Consensus 78 ~Y~~~~G~~~LR~aiA~~l~~~~~~~~~~~~e~Ivit~G~~~al~~~~~~l~~--------~Gd~Vlv~~P~y~~~~~~~ 149 (428)
T d1iaya_ 78 NFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLAD--------PGDAFLVPSPYYPAFNRDL 149 (428)
T ss_dssp HCCCTTCCHHHHHHHHHHHHHHTTTCSCCCTTSCEEEEHHHHHHHHHHHHHCC--------TTCEEEEESSCCTTHHHHT
T ss_pred cCcCCcchHHHHHHHHHHHHHHhCCCCCCChhhEEEcCCHHHHHHHHHHHhCC--------CCCEEEEccCCchHHHHHH
Confidence 344445667888888888887754 3467999999999999999987643 5688999999998874322
Q ss_pred ccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHH---HhCCCcEEEEEEccccccCCCcccC
Q psy8199 364 LAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILL---KKNHNKIAAIIIEPLVQCAGGMIMY 440 (965)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l---~~~~~~~aaii~ep~v~~~~G~~~~ 440 (965)
....| ..++.++........ .|.++++.++ .....++.++++.. ++|++|.+.
T Consensus 150 ~~~~g------------~~~v~v~~~~~~~~~----------~d~~~~~~~~~~~~~~~~~~~~~~l~n-P~NPtG~~~- 205 (428)
T d1iaya_ 150 RWRTG------------VQLIPIHCESSNNFK----------ITSKAVKEAYENAQKSNIKVKGLILTN-PSNPLGTTL- 205 (428)
T ss_dssp TTTTC------------CEEEEECCCTTTTTC----------CCHHHHHHHHHHHHHTTCCEEEEEEES-SCTTTCCCC-
T ss_pred HHhcC------------CeEEEeecccccccc----------cccccccchhhhhhccCCCceEEEEcc-CCCcccccc-
Confidence 21111 112233322111100 1334443332 22344555554444 489999766
Q ss_pred ChHHHHHHHHHHHhcCCeEEEeccccCCCcccccc-cc-ccc------CCCcc-e---eeeccccCCCcccceeeeec-H
Q psy8199 441 DSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFF-AC-EHA------EIWPD-F---LCLSKGITGGYLPLSLVMTT-D 507 (965)
Q Consensus 441 ~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~-~~-~~~------~~~pD-i---vt~sK~l~gG~~pig~v~~~-~ 507 (965)
+.+.+++|.++|++||+++|+||+|..+...+..+ .. +.. ...+| + -+|||.++..++++|++++. +
T Consensus 206 s~~~~~~i~~~a~~~~~~vI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~GlRiG~~~~~~~ 285 (428)
T d1iaya_ 206 DKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPGFRVGIIYSFND 285 (428)
T ss_dssp CHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTSSCGGGCEEEEEESCH
T ss_pred cccccchhheeeccCcEEEEecccccccccCcccccccccccchhhccccccceEEEEecCCCcccCCCccccccccccc
Confidence 77789999999999999999999998775444321 11 111 11222 2 26899876433899999884 5
Q ss_pred HHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHH---HHhc--ccHHHHHHHHHHHHHHHHHcccCCCceeeeece-e
Q psy8199 508 KIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLE---IFNK--DNILQRISQDMKKITKALTSLITHPKIINFRQK-G 581 (965)
Q Consensus 508 ~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~---~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~-G 581 (965)
.+.+.+.. .......+...+.++.+.+. .+.+ ....+.++++.+.+.+.|+. +++....+. |
T Consensus 286 ~l~~~~~~--------~~~~~~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~l~~r~~~~~~~L~~----~gi~~~~p~gg 353 (428)
T d1iaya_ 286 DVVNCARK--------MSSFGLVSTQTQYFLAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEV----VGIKCLKNNAG 353 (428)
T ss_dssp HHHHHHHH--------HHTTSCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH----TTCCBCCCSSS
T ss_pred chhhhhhh--------hhcccccccccccchhhhhhhhccccccccccccccchhHHHHHHHHHh----CCCEEecCCcc
Confidence 66666544 11112234444444444332 1111 12333444455556666544 355555555 4
Q ss_pred EEEEEEEeecCccchhhHHHHHHHHHH-HcCcEEeec-------CCEEEEeCCcccCHHHHHHHHHhhhccc
Q psy8199 582 MIWAFDVIIEDPEQIETFSKKFFVAAL-KNELLLRPI-------GNTVYLMPPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 582 ~~~~i~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~-------~~~lR~~p~~~~t~~~i~~~~~~l~~~~ 645 (965)
.|+++++.............++++.|+ +.||++.|+ .+++||+.. ..++++++++++++.+.+
T Consensus 354 ~f~w~~l~~~~~~~~~~~~~~l~~~Ll~~~gV~v~PG~~F~~~~~g~~Ris~a-~~~~~~l~~al~Rl~~~l 424 (428)
T d1iaya_ 354 LFCWMDLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFECQEPGWFRVCFA-NMDDGTVDIALARIRRFV 424 (428)
T ss_dssp SEEEEECGGGCSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSSSEEEEECS-SSCHHHHHHHHHHHHHHH
T ss_pred eEEEEECccccccCCCCCHHHHHHHHHHhCCEEEEcchhcCCCCCCEEEEEeC-CCCHHHHHHHHHHHHHHH
Confidence 556666541110111112335666665 569999874 268999932 356778999998887644
|
| >d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Apple (Malus domestica) [TaxId: 3750]
Probab=99.73 E-value=5.9e-17 Score=182.71 Aligned_cols=312 Identities=14% Similarity=0.091 Sum_probs=185.9
Q ss_pred cccCCCCcHHHHHHHHHHHhhcC----CCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccc
Q psy8199 289 VMLSNLTHKPVIKLSEKLSSLTQ----YKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGAL 364 (965)
Q Consensus 289 ~~~~~~~~~~~~~la~~l~~~~~----~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~ 364 (965)
|....+..+.+..+|+.+.+..+ .++++|++|+|+++|+..++++... +++.|++.+++|+++.....
T Consensus 80 Y~~~~G~~~LR~aiA~~l~~~~~~~~~~~pe~I~it~G~~~al~~~~~~l~~--------pGd~Vlv~~P~y~~~~~~~~ 151 (431)
T d1m7ya_ 80 FQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLAD--------PGEAVLIPTPYYPGFDRDLK 151 (431)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHTTTSSCCCGGGEEEEEHHHHHHHHHHHHHCC--------TTCEEEEEESCCTTHHHHTT
T ss_pred CcCCcCcHHHHHHHHHHHHHHhCCCCCCCcceEEECCCHHHHHHHHHHHhcC--------CCCEEEEeCCCchhHHHHHH
Confidence 44445566788888888887754 3456999999999999999987642 56889999999987743332
Q ss_pred cccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHh---CCCcEEEEEEccccccCCCcccCC
Q psy8199 365 AVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKK---NHNKIAAIIIEPLVQCAGGMIMYD 441 (965)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~---~~~~~aaii~ep~v~~~~G~~~~~ 441 (965)
...+. ..+.++.....+.. .|.+++++.+.+ ...++.++++.. ++|++|.+. +
T Consensus 152 ~~~g~------------~~v~v~~~~~~~~~----------l~~~~~~~~~~~~~~~~~~~~~i~~~n-P~NPtG~~~-s 207 (431)
T d1m7ya_ 152 WRTGV------------EIVPIHCTSSNGFQ----------ITETALEEAYQEAEKRNLRVKGVLVTN-PSNPLGTTM-T 207 (431)
T ss_dssp TTTCC------------EEEEEECCGGGTSC----------CCHHHHHHHHHHHHHTTCCEEEEEEES-SCTTTCCCC-C
T ss_pred HhcCc------------eeccccccchhccc----------ccHHHhhhhhhhhhhccCcceEEEecC-ccccccccc-c
Confidence 22221 12222222111100 134555555432 244555555544 489999776 7
Q ss_pred hHHHHHHHHHHHhcCCeEEEeccccCCCcccccc-cc-ccc---------CCCccee---eeccccCCCcccceeeeecH
Q psy8199 442 SIYLKLVREICNNYNIHLIADEIAVGCGRTGKFF-AC-EHA---------EIWPDFL---CLSKGITGGYLPLSLVMTTD 507 (965)
Q Consensus 442 ~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~-~~-~~~---------~~~pDiv---t~sK~l~gG~~pig~v~~~~ 507 (965)
.+.+++|.++|++||+++|+||+|..+-..+..+ .. +.. +....++ +|||.++..++++|++++++
T Consensus 208 ~~~l~~i~~~a~~~~~~vI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~RiG~~~~~~ 287 (431)
T d1m7ya_ 208 RNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSND 287 (431)
T ss_dssp HHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSCCCCHHHHTTTTTCSSSSSGGGGEEEEEESSSSSCCGGGCEEEEEESC
T ss_pred ccccccccccccccCcceeecccccccccCCCCCCCHHHHhhhcccccccccCceEEEEecCcccccCCCCccceeccch
Confidence 8889999999999999999999998765444321 11 100 1111233 58998874338999999988
Q ss_pred HHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh---c--ccHHHHHHHHHHHHHHHHHcccCCCceeeeecee-
Q psy8199 508 KIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN---K--DNILQRISQDMKKITKALTSLITHPKIINFRQKG- 581 (965)
Q Consensus 508 ~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~---~--~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~G- 581 (965)
+++..... ........++..+.++.+.+.... + .....+++++.+.+.+.|++ +++..+++.|
T Consensus 288 ~~i~~~~~-------~~~~~~~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~gi~~~~p~gg 356 (431)
T d1m7ya_ 288 DMVVAAAT-------KMSSFGLVSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQK----SGISCLNGNAG 356 (431)
T ss_dssp HHHHHHHH-------HHGGGSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHT----TTCEECCCCSS
T ss_pred hhhHHHHH-------HHhccccccccccchhhhhhccchhhhhhhhhhhhhhhhhhhhhhhhhhc----CCcEEecCCce
Confidence 77544433 112223344555444444442111 0 11233344445555555543 3666666664
Q ss_pred EEEEEEEeecCccchhhHHHHHHHHHH-HcCcEEeec-------CCEEEEeCCcc-cCHHHHHHHHHhhhccc
Q psy8199 582 MIWAFDVIIEDPEQIETFSKKFFVAAL-KNELLLRPI-------GNTVYLMPPYI-LNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 582 ~~~~i~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~-------~~~lR~~p~~~-~t~~~i~~~~~~l~~~~ 645 (965)
+++++++...-.........+++++|+ +.||++.|+ .+++|++ +. .++++++++++++.+.+
T Consensus 357 ~f~w~~l~~~~~~~~~~~~~~l~~~ll~~~gV~v~PG~~F~~~~~~~~Ri~--~a~~~e~~l~~al~rL~~~l 427 (431)
T d1m7ya_ 357 LFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVC--FANLPERTLDLAMQRLKAFV 427 (431)
T ss_dssp SEEEEECGGGSSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSTTEEEEE--CSSSCHHHHHHHHHHHHHHH
T ss_pred eEEEEECccccccCcccCHHHHHHHHHHHCCEEEEeccccCCCCCCEEEEE--eCcCCHHHHHHHHHHHHHHH
Confidence 556666541000111112335666665 679999884 2689998 44 46778999998887654
|
| >d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Leishmania major [TaxId: 5664]
Probab=99.69 E-value=2.3e-16 Score=170.77 Aligned_cols=324 Identities=10% Similarity=0.002 Sum_probs=175.2
Q ss_pred CCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEE
Q psy8199 271 SNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFI 350 (965)
Q Consensus 271 ~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi 350 (965)
.||+|++|+.++.... . ...+..+..+++.++++++++...++|+||+||||||..|+..+.. ++++++
T Consensus 12 ~~P~v~eAl~~~~~~~--~-~~y~~~~~~~~lr~~ia~~~g~~~~~v~~tsggtean~~a~~~~~~--------~~~~~~ 80 (340)
T d1svva_ 12 MHPKILDLMARDNMTQ--H-AGYGQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIACSLALR--------PWEAVI 80 (340)
T ss_dssp CCHHHHHHHHHHTTCC--C-CSTTCSHHHHHHHHHHHHHHTCTTSEEEEESCHHHHHHHHHHHHCC--------TTEEEE
T ss_pred CCHHHHHHHHHHhhcC--C-CCCCCCHHHHHHHHHHHHHhCCCcceEEEcCCHHHHHHHHHHHHhh--------hccccc
Confidence 6999999999875442 1 1234677788999999999987778999999999999999987753 456666
Q ss_pred EEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccc
Q psy8199 351 CLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPL 430 (965)
Q Consensus 351 ~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~ 430 (965)
.....++............ ............. . . .+..+..............+++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~-~--------~-~~~~~~~~~~~~~~~~~~~~~~~~- 138 (340)
T d1svva_ 81 ATQLGHISTHETGAIEATG-----------HKVVTAPCPDGKL-R--------V-ADIESALHENRSEHMVIPKLVYIS- 138 (340)
T ss_dssp EETTSHHHHSSTTHHHHTT-----------CCEEEECCTTSCC-C--------H-HHHHHHHHHSCSTTSCEEEEEEEE-
T ss_pred cccccceeeeecccccccc-----------eeeeecccccccc-c--------c-hhHHHHhhhhhcccCCcceeeeec-
Confidence 6665554432211111110 0111111111000 0 0 111111111111122333333333
Q ss_pred cccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccc--cccccccCCCcceeeeccccCCCcccceeeeecHH
Q psy8199 431 VQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK--FFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDK 508 (965)
Q Consensus 431 v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~--~~~~~~~~~~pDivt~sK~l~gG~~pig~v~~~~~ 508 (965)
..+++|.+. +.+.+..+.+.|+++|+++++|+++.+...... .+.........++.++++..+++....+.......
T Consensus 139 ~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (340)
T d1svva_ 139 NTTEVGTQY-TKQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKAGGMFGEALIILNDA 217 (340)
T ss_dssp SSCTTSCCC-CHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTTTCSSCEEEEECSGG
T ss_pred ccccccccc-cHHHhhhhhcccccccceeeeeccceeeeecccccccccccccccceeeecCCccccccccccccccchh
Confidence 356666555 566688999999999999999999974322111 11111111123444555544443222222333333
Q ss_pred HHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcccCCCceee-eeceeEEEEEE
Q psy8199 509 IYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIIN-FRQKGMIWAFD 587 (965)
Q Consensus 509 i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~i~~-v~g~G~~~~i~ 587 (965)
....... .....+++......+.+++.+.++........++...+..++...|+.. ++.. .++.+.++.+.
T Consensus 218 ~~~~~~~----~~~~~~~~~~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----g~~~~~p~~~~~v~~~ 289 (340)
T d1svva_ 218 LKPNARH----LIKQRGALMAKGWLLGIQFEVLMKDNLFFELGAHSNKMAAILKAGLEAC----GIRLAWPSASNQLFPI 289 (340)
T ss_dssp GCTTHHH----HHHHTTCCCTTTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHT----TCCBSSCCSSSEECBE
T ss_pred hhhhhhh----hcccccCccchhhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHhcC----CCeeecCCCceEEEEe
Confidence 2222221 1122334444445555544444432222335566666777777777664 3332 24456666655
Q ss_pred EeecCccchhhHHHHHHHHHHHcCcEEeecC-CEEEEeCCcccCHHHHHHHHHhhhc
Q psy8199 588 VIIEDPEQIETFSKKFFVAALKNELLLRPIG-NTVYLMPPYILNKNEIQHMTSAIFQ 643 (965)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~-~~lR~~p~~~~t~~~i~~~~~~l~~ 643 (965)
+. ......+.+.+...|+...+.+ +.+||++++.+|+++||++++++++
T Consensus 290 ~~-------~~~~~~l~~~~~~~~~~~~~~~~~~vR~s~~~~~t~edid~~l~~l~~ 339 (340)
T d1svva_ 290 LE-------NTMIAELNNDFDMYTVEPLKDGTCIMRLCTSWATEEKECHRFVEVLKR 339 (340)
T ss_dssp EE-------HHHHHHHTTTEECEEEEEETTTEEEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred CC-------HHHHHHHHHhhhhhcccccCCCCcEEEEECCCCCCHHHHHHHHHHHhc
Confidence 53 1223223232223333344433 6899999999999999999998864
|
| >d1olta_ c.1.28.2 (A:) Oxygen-independent coproporphyrinogen III oxidase HemN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Radical SAM enzymes family: Oxygen-independent coproporphyrinogen III oxidase HemN domain: Oxygen-independent coproporphyrinogen III oxidase HemN species: Escherichia coli [TaxId: 562]
Probab=99.68 E-value=3.7e-16 Score=174.21 Aligned_cols=210 Identities=11% Similarity=0.179 Sum_probs=162.4
Q ss_pred CCeEEEeEeEeeccCCCCCCCCCCCCCCcCCCCcccccCCCHHHHHHHHHHHHH----CCCCEEEEeeccCCCCcccHHH
Q psy8199 676 ANEIELAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKS----DGATRFCMGAAWRELKDRDLDN 751 (965)
Q Consensus 676 g~~~~~~~~i~~~s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~----~g~~~i~l~~g~~~~~~~~~~~ 751 (965)
+..+.++..|.+ |+..|.||.+............ .-.+.+.+|++...+ ..+..+++.||.. ...+.+.
T Consensus 47 ~~plsLYiHiPF----C~~~C~yC~~~~~~~~~~~~~~-~Y~~~L~~Ei~~~~~~~~~~~v~~i~~GGGTP--t~L~~~~ 119 (441)
T d1olta_ 47 ERPLSLYVHIPF----CHKLCYFCGCNKIVTRQQHKAD-QYLDALEQEIVHRAPLFAGRHVSQLHWGGGTP--TYLNKAQ 119 (441)
T ss_dssp TSCEEEEEEECE----ESSCCTTCCSSCEECSCTHHHH-HHHHHHHHHHHHHGGGGTTCCEEEEEEEESCG--GGSCHHH
T ss_pred CCceEEEEEeCC----CCCCCCCCcCeeecCCCcchHH-HHHHHHHHHHHHhhHhcCCCccceeEecCCCc--CCCCHHH
Confidence 344666666554 9999999998654222211110 013556666654333 2467888877743 3445677
Q ss_pred HHHHHHHHHhc-------CcEeEEecCCCCHHHHHHHHHhCCCeEeccCCC-CHHHHhcccCCCCHHHHHHHHHHHHHcC
Q psy8199 752 IENMICEVKKI-------GLETCLTLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVG 823 (965)
Q Consensus 752 ~~~~~~~i~~~-------~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~~es-~~~~~~~i~~~~~~~~~~~~i~~~~~~G 823 (965)
+.++++.+++. .+.+.+++..++++.++.|+++|++++++|+|| ++++++.+++.++.++..++++.++++|
T Consensus 120 l~~ll~~l~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~G~nRiSlGvQs~~~~vl~~i~R~~~~~~~~~~~~~~r~~g 199 (441)
T d1olta_ 120 ISRLMKLLRENFQFNADAEISIEVDPREIELDVLDHLRAEGFNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHAREIG 199 (441)
T ss_dssp HHHHHHHHHHHSCEEEEEEEEEEECSSSCCTHHHHHHHHTTCCEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhhccccchhcccccccccccchHHHHHHHHhCCceEEecchhcchhhhhhhhcCCCHHHHHHHHHHHHhcc
Confidence 77777777651 234566889999999999999999999999999 9999999999999999999999999999
Q ss_pred Cc-eeeeEEEec-CCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCC-----CCCCCHHHHHHHHHHHHHHCC
Q psy8199 824 IN-ICCGGIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYG-----SSILDPLEFIRTIAVARITMP 894 (965)
Q Consensus 824 i~-v~~~~i~Gl-~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~-----~~~~~~~~~~~~ia~~R~~lp 894 (965)
+. +++.+|+|+ |+|.+++.++++.+.+++ ++.|.++.|...|+|.... ...++.++.+++...++..|.
T Consensus 200 ~~~vn~DLI~GlPgqT~~~~~~tl~~~~~l~--pd~is~y~~~~~p~~~~~q~~~~~~~lp~~~~~~~~~~~~~~~L~ 275 (441)
T d1olta_ 200 FTSTNIDLIYGLPKQTPESFAFTLKRVAELN--PDRLSVFNYAHLPTIFAAQRKIKDADLPSPQQKLDILQETIAFLT 275 (441)
T ss_dssp CCSCEEEEEESCTTCCHHHHHHHHHHHHHHC--CSEEEEEECCCCTTTSGGGGGSCGGGSCCHHHHHHHHHHHHHHHH
T ss_pred cceeecccccccCCcchHHHHHHHHHHHhhC--CCccccccceeccchhHhhhhccccchhhhHHHHHHHHHHHHHHH
Confidence 95 999999999 699999999999999999 9999999999988875543 244678888888888877764
|
| >d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cysteine desulfurase IscS species: Escherichia coli [TaxId: 562]
Probab=99.67 E-value=1.2e-15 Score=169.81 Aligned_cols=340 Identities=10% Similarity=0.082 Sum_probs=198.4
Q ss_pred ccccccccchhccCCCCCHHHHHHHHHHHhhcccc-ccCCCC-------cHHHHHHHHHHHhhcCCCCCeEEEcCChhHH
Q psy8199 255 RYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHV-MLSNLT-------HKPVIKLSEKLSSLTQYKLGHCFYGSDGASA 326 (965)
Q Consensus 255 ~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~-~~~~~~-------~~~~~~la~~l~~~~~~~~~~v~~~~sGseA 326 (965)
-|+|..++ |..+|.|++||.+.+.....+ +..+.. .+..+++.++++++++.+.++|.|++|+|++
T Consensus 4 iYlD~aa~------~p~~~~v~ea~~~~~~~~~~~~np~~~~~~~~~~~~~~~~~~R~~iA~~lg~~~~~I~~~~~~t~~ 77 (391)
T d1p3wa_ 4 IYLDYSAT------TPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPREIVFTSGATES 77 (391)
T ss_dssp EECBTTTC------CCCCHHHHHHHHTTTSTTSCCCCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESSHHHH
T ss_pred EEeeCccc------cCCCHHHHHHHHHHHHhccccCCCchhhhHHHHHHHHHHHHHHHHHHHHcCCCCCcEEEECCHHHH
Confidence 38887765 346899999999887653222 222222 2334567778999998888899999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHH
Q psy8199 327 VEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARC 406 (965)
Q Consensus 327 ~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (965)
+..++..+..... .+++.|++.+..|++.......+ ......+..+|..... . .
T Consensus 78 l~~~~~~~~~~~~----~~gd~Vv~~~~~~~s~~~~~~~~----------~~~G~~v~~v~~~~~~-~-----------~ 131 (391)
T d1p3wa_ 78 DNLAIKGAANFYQ----KKGKHIITSKTEHKAVLDTCRQL----------EREGFEVTYLAPQRNG-I-----------I 131 (391)
T ss_dssp HHHHHHHHHHHHG----GGCCEEEEETTSCHHHHHHHHHH----------HHTTCEEEEECCCTTS-C-----------C
T ss_pred HHHHHhhhhhhhc----CCCCEEEEeccccchHHHHHHHH----------HHcCCEEEEeCCCCCC-e-----------E
Confidence 9999886654211 25678888888776642111111 0011234555543211 1 2
Q ss_pred HHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcce
Q psy8199 407 AIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDF 486 (965)
Q Consensus 407 d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDi 486 (965)
|+++++++++ +++++|+++. +++++|.+.| +++|.++|++||+++++|.+|+ +|.. ..+.....+|+
T Consensus 132 d~~~~~~~i~---~~T~lv~is~-~~n~tG~~~~----~~~I~~~~~~~~~~~ivD~~~~-~g~~----~~d~~~~~~D~ 198 (391)
T d1p3wa_ 132 DLKELEAAMR---DDTILVSIMH-VNNEIGVVQD----IAAIGEMCRARGIIYHVDATQS-VGKL----PIDLSQLKVDL 198 (391)
T ss_dssp CHHHHHHHCC---TTEEEEECCS-BCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTT-BTTB----CCCTTTSCCSE
T ss_pred cHHHHHHhCC---CCcEEEEEEC-CCCCCeeECC----HHHHHHHhccCCcEEEEeeccc-cCCc----cccchhccccc
Confidence 5778888774 6788999988 8999999998 8999999999999999999996 5422 22233445788
Q ss_pred eeec--cccCCCcccceeeeecHHHHHhhhccCCcccccccCCCC-CCHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHH
Q psy8199 487 LCLS--KGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYS-GNPLACCAALATLEIFNK--DNILQRISQDMKKI 561 (965)
Q Consensus 487 vt~s--K~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~-~~~~~~aaa~a~L~~~~~--~~~~~~~~~~~~~l 561 (965)
++++ |.+ |+ ..+|++.++++.+..................+ .+....++....++...+ ....++++++..++
T Consensus 199 ~~~s~~k~~-g~-~g~g~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 276 (391)
T d1p3wa_ 199 MSFSGHKIY-GP-KGIGALYVRRKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAKEEMATEMERLRGLRNRL 276 (391)
T ss_dssp EEEESTTTT-SC-SSCEEEEECBTTBCCCCCSSCSSCTTTTTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccc-CC-CceEEEEEecchhcccCCcccCCccccCcccCcchhhhhhhhhhhhhHHHHHhhHHHHHHHHHHHHH
Confidence 7654 554 32 45788888877654443210000000011111 222222222223332221 22356666667777
Q ss_pred HHHHHcccCCCceeee--eceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEe------------------------
Q psy8199 562 TKALTSLITHPKIINF--RQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLR------------------------ 615 (965)
Q Consensus 562 ~~~L~~l~~~~~i~~v--~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~------------------------ 615 (965)
.++|..+... .+... .....++.+.+. . .. ...+...+. ++.++
T Consensus 277 ~~~L~~~~~~-~~~~~~~~~~~~~~~~~~~--~-~~----~~~~~~~l~--~i~v~~G~~c~~~~~~~~~~l~~~g~~~~ 346 (391)
T d1p3wa_ 277 WNGIKDIEEV-YLNGDLEHGAPNILNVSFN--Y-VE----GESLIMALK--DLAVSSGSACTSASLEPSYVLRALGLNDE 346 (391)
T ss_dssp HHTTTTSTTE-EECSCTTTSCTTEEEEEET--T-SC----HHHHHHHTT--TEECBCCCC------CCCHHHHHHTCCHH
T ss_pred HHHHHhhcCe-eecccccccCceEEEEEeC--C-CC----hHHHHHHhC--CCEEEccccccCCccchhHHHHHcCCCcc
Confidence 7666554211 11111 111223333332 1 11 222333332 22221
Q ss_pred ecCCEEEEeCCcccCHHHHHHHHHhhhcccccHHHH
Q psy8199 616 PIGNTVYLMPPYILNKNEIQHMTSAIFQTFNELDEV 651 (965)
Q Consensus 616 ~~~~~lR~~p~~~~t~~~i~~~~~~l~~~~~~~~e~ 651 (965)
..++.+|+++++..|.+|++.+++.+.+.+..+.+.
T Consensus 347 ~~~g~iRiS~~~~nt~edid~l~~~l~~~l~~lr~~ 382 (391)
T d1p3wa_ 347 LAHSSIRFSLGRFTTEEEIDYTIELVRKSIGRLRDL 382 (391)
T ss_dssp HHHTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHS
T ss_pred ccCCEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 112579999999999999999999998877655443
|
| >d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.66 E-value=6.7e-16 Score=170.22 Aligned_cols=328 Identities=10% Similarity=0.082 Sum_probs=184.1
Q ss_pred CCCCHHHHHHHHHHHhhccc--cccCC-----CCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhc
Q psy8199 269 GHSNSYINKALKNQLNKLEH--VMLSN-----LTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNK 341 (965)
Q Consensus 269 Gh~~p~v~~av~~~~~~~~~--~~~~~-----~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~ 341 (965)
|.-.|++.+|+.+..+..+. +...+ ...+....+.+++++++ +.+.+++|+||++|+.+++....
T Consensus 12 ~~l~~~a~~a~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~A~~~--g~e~~~~t~g~t~a~~~~~~al~------ 83 (364)
T d2e7ja1 12 GKLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFL--GCDVARVTNGAREAKFAVMHSLA------ 83 (364)
T ss_dssp CCCCHHHHHHHHHC--------------------CCHHHHHHTHHHHHT--TSSEEEEESSHHHHHHHHHHHHC------
T ss_pred CcCCHHHHHHHHHHhcCCchhccccccccccccChHHHHHHHHHHHHHh--CcCEEEEECcHHHHHHHHHHHHh------
Confidence 44578888888754332110 00000 11235677889999999 46899999999999999998663
Q ss_pred CCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCC--
Q psy8199 342 GFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNH-- 419 (965)
Q Consensus 342 g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~-- 419 (965)
.+++.||+.+++|+..... ....| ..+.++|........ .|++++++++++..
T Consensus 84 --~~gd~Vi~~~~~h~s~~~~-~~~~g------------~~v~~v~~~~~~~~~----------i~~~~l~~~i~~~~k~ 138 (364)
T d2e7ja1 84 --KKDAWVVMDENCHYSSYVA-AERAG------------LNIALVPKTDYPDYA----------ITPENFAQTIEETKKR 138 (364)
T ss_dssp --CTTCEEEEETTCCHHHHHH-HHHTT------------CEEEEECCCCTTTCC----------CCHHHHHHHHHHHTTT
T ss_pred --CCCcEEEeecccccccchH-HHhcc------------ceEEEeeeccccccc----------cCHHHHHhhhhhhccc
Confidence 2567888877766443222 11111 234455543211111 36788888887642
Q ss_pred CcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcceeeec--cccCCCc
Q psy8199 420 NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS--KGITGGY 497 (965)
Q Consensus 420 ~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~s--K~l~gG~ 497 (965)
..++.|+++. ++|++|.+.+ +++|.++|++||+++|+||+|+ +|..+. .......|++++| |.++++
T Consensus 139 ~~~~lv~i~~-~~n~tG~~~~----l~~I~~ia~~~~i~livD~a~~-~g~~~~----~~~~~g~D~~~~S~~K~~~~~- 207 (364)
T d2e7ja1 139 GEVVLALITY-PDGNYGNLPD----VKKIAKVCSEYDVPLLVNGAYA-IGRMPV----SLKEIGADFIVGSGHKSMAAS- 207 (364)
T ss_dssp SCEEEEEEES-SCTTTCCCCC----HHHHHHHHHTTTCCEEEECTTT-BTTBCC----CHHHHTCSEEEEEHHHHSSCC-
T ss_pred CCceEEEeec-CCCCCceeec----chhheeccccccchhhccccch-hhhhhh----cccccccceeeeccccccCCC-
Confidence 4567777777 7899999887 9999999999999999999995 543321 1112236888765 988775
Q ss_pred ccceeeeecHHHHHhhhccCCc----ccccccCCCCCCHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHcccCCC
Q psy8199 498 LPLSLVMTTDKIYNSIYYKNNI----NIFLHSHSYSGNPLACCAALATLEIFNK-DNILQRISQDMKKITKALTSLITHP 572 (965)
Q Consensus 498 ~pig~v~~~~~i~~~~~~~~~~----~~~~~~~t~~~~~~~~aaa~a~L~~~~~-~~~~~~~~~~~~~l~~~L~~l~~~~ 572 (965)
.++|++++++++++.+...... .....+.+.. .....+..++++.+.+ -+......++.+++.+.|.++. ..
T Consensus 208 g~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g-~~ 284 (364)
T d2e7ja1 208 GPIGVMGMKEEWAEIVLRRSEKYKNKEVELLGCTAR--GATIITLMASFPHVRERIKRWDEEVEKARRFAAEMEKLG-IK 284 (364)
T ss_dssp SSCEEEEECTTTTTTTTCBCSSCTTSBGGGTTCCCC--SHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHTT-CE
T ss_pred CCEEEEEECHHHHHHHHhhccccCcccccccccccc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-Ce
Confidence 3688899998887766431100 0011122222 2233344455544322 1122333345667777776541 01
Q ss_pred cee-eeeceeEEEEEEEeecCc--cchhhHHHHHHHHHHHcCcEEeecC--CEEEEeCCcccCHHHHHHHHHhhhccc
Q psy8199 573 KII-NFRQKGMIWAFDVIIEDP--EQIETFSKKFFVAALKNELLLRPIG--NTVYLMPPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 573 ~i~-~v~g~G~~~~i~~~~~~~--~~~~~~~~~~~~~l~~~Gi~~~~~~--~~lR~~p~~~~t~~~i~~~~~~l~~~~ 645 (965)
.+. ........ .+....... .........+...+...|+.....+ ...|++ .+..++++++++++++.+.+
T Consensus 285 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~-~~~~t~edid~~~~~l~ei~ 360 (364)
T d2e7ja1 285 QLGDNPHNHDLM-FFHAEVLYEISKKAKGGRFFLYRELKSRKIHGIKPGLTRYFKLS-TYGLSDEEVDYVLNAFKEII 360 (364)
T ss_dssp EESSSSCCSSEE-EEECHHHHHHHHHSSSGGGHHHHHHHHTTEECSCTTCCSEEEEE-CTTCCHHHHHHHHHHHHHHH
T ss_pred ecCCCCCCcceE-EEeccchHHHHHHhhccchHHHHHHHhcCCceecCCCcceEEEe-ccCCCHHHHHHHHHHHHHHH
Confidence 111 11111111 111110000 0000011134456677787654332 456665 45679999999999987654
|
| >d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Escherichia coli [TaxId: 562]
Probab=99.65 E-value=5.9e-15 Score=164.55 Aligned_cols=331 Identities=11% Similarity=0.053 Sum_probs=212.8
Q ss_pred ccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCC-------cHHHHHHHHHHHhhcCC-CCCeEEEcCChhHH
Q psy8199 255 RYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLT-------HKPVIKLSEKLSSLTQY-KLGHCFYGSDGASA 326 (965)
Q Consensus 255 ~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~-------~~~~~~la~~l~~~~~~-~~~~v~~~~sGseA 326 (965)
.|||..++ |-.++.|++++.+.+.+.. .+..... .+..++..+.+++.++. ..+.++|++|+|+|
T Consensus 24 iYld~a~~------~~~p~~v~~~~~~~~~~~~-~n~~~~~~~~~~~~~~~~e~~R~~ia~~l~~~~~~~i~~~~~~T~~ 96 (405)
T d1jf9a_ 24 AYLDSAAS------AQKPSQVIDAEAEFYRHGY-AAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTTEG 96 (405)
T ss_dssp EECCTTTC------CCCCHHHHHHHHHHHHHTC-CCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHH
T ss_pred EEEeCccc------cCCCHHHHHHHHHHHHhcc-CCCccchhHHHHHHHHHHHHHHHHHHHHcCCCCcccccccCcHHHH
Confidence 48997665 2368999999998876631 1111111 23445667788898874 34789999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHH
Q psy8199 327 VEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARC 406 (965)
Q Consensus 327 ~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (965)
+..+++...... ..+++.|++.+..||........+.. .....+..+|...... .
T Consensus 97 ~~~~~~~~~~~~----~~~g~~il~~~~e~~s~~~~~~~~a~---------~~g~~v~~~~~~~~g~------------~ 151 (405)
T d1jf9a_ 97 INLVANSWGNSN----VRAGDNIIISQMEHHANIVPWQMLCA---------RVGAELRVIPLNPDGT------------L 151 (405)
T ss_dssp HHHHHHHHHHHH----CCTTCEEEEETTCCGGGTHHHHHHHH---------HHTCEEEEECBCTTSC------------B
T ss_pred HHHHHhcccccc----cCCCCEEEEEeCcccchHHHHHHHHH---------HcCcEEEEECCCCCCc------------C
Confidence 998887533211 14568899988888875332222111 1112355555432111 2
Q ss_pred HHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcce
Q psy8199 407 AIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDF 486 (965)
Q Consensus 407 d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDi 486 (965)
|++.+++++ .++++.|.+.- +++.+|.+.| +++|.++|+++|+++++|-+|+ .|.. ..+.....+|+
T Consensus 152 ~~~~~~~~i---~~~t~lv~~~~-v~~~tG~~~p----i~~i~~~~~~~g~~~~vD~~q~-~g~~----~id~~~~~~D~ 218 (405)
T d1jf9a_ 152 QLETLPTLF---DEKTRLLAITH-VSNVLGTENP----LAEMITLAHQHGAKVLVDGAQA-VMHH----PVDVQALDCDF 218 (405)
T ss_dssp CGGGHHHHC---CTTEEEEEEES-BCTTTCCBCC----HHHHHHHHHHTTCEEEEECTTT-TTTS----CCCHHHHTCSE
T ss_pred CHHHHHHhc---cCCcEEEEEec-CCCcccccCc----hHHhhhHHHHcCCeeeccccee-cccc----ccchhhcCCce
Confidence 456666655 46789999988 8999999999 9999999999999999999996 4422 22222345899
Q ss_pred eeec--cccCCCcccceeeeecHHHHHhhhccCCc------------------ccccccCCCCCCHHHHHHHHHHHHHHh
Q psy8199 487 LCLS--KGITGGYLPLSLVMTTDKIYNSIYYKNNI------------------NIFLHSHSYSGNPLACCAALATLEIFN 546 (965)
Q Consensus 487 vt~s--K~l~gG~~pig~v~~~~~i~~~~~~~~~~------------------~~~~~~~t~~~~~~~~aaa~a~L~~~~ 546 (965)
+++| |.+ |+ -.+|++..++++.+.+...... ......+| .|..+++++.++++.+.
T Consensus 219 ~~~s~hK~~-Gp-~G~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~GT--~~~~~~~~l~~al~~~~ 294 (405)
T d1jf9a_ 219 YVFSGHKLY-GP-TGIGILYVKEALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGT--PNTGGIIGLGAALEYVS 294 (405)
T ss_dssp EEEEGGGTT-SC-SSCEEEEECHHHHTTCCCSSCSSSSEEECCTTTCCEECCTTGGGCCSS--CCHHHHHHHHHHHHHHH
T ss_pred eeccccccc-cC-CCceeeeechhhhcccCcccccccccCccccccccccccchhhhcCCC--CcHHHHHHHHHHHHHHH
Confidence 9876 764 33 4688999999887654321000 00011223 46777888888888765
Q ss_pred c---ccHHHHHHHHHHHHHHHHHcccCCCcee--eeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec----
Q psy8199 547 K---DNILQRISQDMKKITKALTSLITHPKII--NFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI---- 617 (965)
Q Consensus 547 ~---~~~~~~~~~~~~~l~~~L~~l~~~~~i~--~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~---- 617 (965)
+ +.+.++...+.+++.+.++.+ +.+. ....++.++.+.+. . .....+...|.++||.++.+
T Consensus 295 ~~g~~~i~~~~~~L~~~~~~~l~~~---~~~~~~~~~~r~~ivsf~~~--~-----~~~~~~~~~L~~~gI~v~~G~~c~ 364 (405)
T d1jf9a_ 295 ALGLNNIAEYEQNLMHYALSQLESV---PDLTLYGPQNRLGVIAFNLG--K-----HHAYDVGSFLDNYGIAVRTGHHCA 364 (405)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHTTS---TTEEEESCTTCCSEEEEEET--T-----CCHHHHHHHHHHTTEECEEECTTC
T ss_pred HhChHHHHHHHHHHHHHHHhhhhcC---CcccccCCcCcCcEEEEEcC--C-----CCHHHHHHHHHHCCcEEEccchhh
Confidence 4 334455555555555555443 3332 22334556677664 1 11335667788999988642
Q ss_pred ---------CCEEEEeCCcccCHHHHHHHHHhhhcc
Q psy8199 618 ---------GNTVYLMPPYILNKNEIQHMTSAIFQT 644 (965)
Q Consensus 618 ---------~~~lR~~p~~~~t~~~i~~~~~~l~~~ 644 (965)
.+.+|++++...|.+|++.+++.+++.
T Consensus 365 ~~~~~~~~~~g~iRiS~~~ynt~eDid~l~~~l~~i 400 (405)
T d1jf9a_ 365 MPLMAYYNVPAMCRASLAMYNTHEEVDRLVTGLQRI 400 (405)
T ss_dssp HHHHHHTTCSCEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred hhHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 268999999999999999999877654
|
| >d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Escherichia coli [TaxId: 562]
Probab=99.64 E-value=1e-15 Score=170.66 Aligned_cols=351 Identities=11% Similarity=-0.031 Sum_probs=198.1
Q ss_pred EEEecCCcccccccccchhccCCCC--CHHHHHHHHHHHhhc-cc-cccCCCCcHHHHHHHHHHHhhcCC----CCCeEE
Q psy8199 247 KLITFSGKRYLDAISSWWVNLFGHS--NSYINKALKNQLNKL-EH-VMLSNLTHKPVIKLSEKLSSLTQY----KLGHCF 318 (965)
Q Consensus 247 ~~~d~dG~~ylD~~~~~~~~~lGh~--~p~v~~av~~~~~~~-~~-~~~~~~~~~~~~~la~~l~~~~~~----~~~~v~ 318 (965)
+-.|.+.+ -||+..|.+..+-|.. .|.|.+|..+.+++. .+ |....+..+.++.+++.+.+..+. ......
T Consensus 20 ~~~d~~~~-kInL~iG~~~d~~g~~p~~~~V~~A~~~~~~~~~~~~Y~p~~G~~~lR~aia~~~~~~~~~~~~~~~~~~~ 98 (396)
T d2q7wa1 20 FRADERPG-KINLGIGVYKDETGKTPVLTSVKKAEQYLLENETTKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTA 98 (396)
T ss_dssp ---------CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEE
T ss_pred HhccCCCC-cEEeeCCCccCCCCCCCCCHHHHHHHHHHhhCCCCCCCCCCcCCHHHHHHHHHHHHhhcCCcccccceeee
Confidence 33444443 4788877554555543 488999988777653 22 444556777788888877765431 112344
Q ss_pred EcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCC
Q psy8199 319 YGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGN 398 (965)
Q Consensus 319 ~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (965)
.+.+|+.+...++.+.... .+++.|++.+++|.++.......++. .+.+|........
T Consensus 99 ~~~~~~~~~~l~~~~l~~~------~~gd~Vlvp~P~y~~y~~~~~~~g~~-------------~~~~~~~~~~~~~--- 156 (396)
T d2q7wa1 99 QTPGGTGALRVAADFLAKN------TSVKRVWVSNPSWPNHKSVFNSAGLE-------------VREYAYYDAENHT--- 156 (396)
T ss_dssp EESHHHHHHHHHHHHHHHH------SCCCEEEEEESCCTHHHHHHHHTTCE-------------EEEEECEETTTTE---
T ss_pred ccchHHHHHHHHHHHHhhc------ccceEEEEecCCCccchHHHHHcCCe-------------eEecccccccccc---
Confidence 5677777776666544332 36788999999998886555444432 2222221111000
Q ss_pred ChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccc--c
Q psy8199 399 SANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFF--A 476 (965)
Q Consensus 399 ~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~--~ 476 (965)
.+...+++...+...+..++++.+ .+|++|.+. +.+.+++|.++|++|++++|+||+|.+|...+... .
T Consensus 157 -------~~~~~~~~~~~~~~~~~~~i~~~~-P~NPTG~~~-s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~ 227 (396)
T d2q7wa1 157 -------LDFDALINSLNEAQAGDVVLFHGC-CHNPTGIDP-TLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEG 227 (396)
T ss_dssp -------ECHHHHHHHHTTCCTTCEEEEECS-SCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHH
T ss_pred -------cccchHHHHHHHhccCcEEEEecC-CcCCcCeec-CHHHHHHHHHHHhcCCeEEEEeccccccccCCccCchH
Confidence 134444555544455566666665 699999766 78889999999999999999999999986544321 1
Q ss_pred cc-ccCCCcce---eeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCC-CHHHHHHHHHHHHH------H
Q psy8199 477 CE-HAEIWPDF---LCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSG-NPLACCAALATLEI------F 545 (965)
Q Consensus 477 ~~-~~~~~pDi---vt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~-~~~~~aaa~a~L~~------~ 545 (965)
.. ..+..++. ..+||.++..++++|+++++...++.+............+++.. +..++.++.+.+.. .
T Consensus 228 ~~~~~~~~~~~~~~~s~sk~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~ 307 (396)
T d2q7wa1 228 LRAFAAMHKELIVASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIW 307 (396)
T ss_dssp HHHHHHHCSCEEEEEECTTTTTCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHH
T ss_pred hhhhhhhcccccccccccccccccCCCccccccchhHHHHHHHhhhhhhhhhhccccCCCHHHHHHHHHHhcCchhHHHH
Confidence 11 11222333 35789765433899999998765554432000000112233433 44445544444321 0
Q ss_pred hc--ccHHHHHHHHHHHHHHHHHcccCCCceeee-eceeEEEEEEEeecCccchhhHHHHHHHHH-HHcCcEEeecCCEE
Q psy8199 546 NK--DNILQRISQDMKKITKALTSLITHPKIINF-RQKGMIWAFDVIIEDPEQIETFSKKFFVAA-LKNELLLRPIGNTV 621 (965)
Q Consensus 546 ~~--~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v-~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l-~~~Gi~~~~~~~~l 621 (965)
.+ +...++++++.+.+.+.|+++.-...+..+ ...|.|..+.+. . ++.++| .++||++.|++
T Consensus 308 ~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~G~F~~~~l~-------~----e~~~~L~~e~gV~~~~g~--- 373 (396)
T d2q7wa1 308 EQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLT-------K----EQVLRLREEFGVYAVASG--- 373 (396)
T ss_dssp HHHHHHC-CHHHHHHHHHHHHHHHTTCCSCCTHHHHCCSSEEECCCC-------H----HHHHHHHHHHCEECCTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceecCCCeEEEeeCCC-------H----HHHHHHHHhCCEEECCCC---
Confidence 00 123455566667777777665211112223 334655543332 1 233444 47899988865
Q ss_pred EEeCCcccCHHHHHHHHHhhhcc
Q psy8199 622 YLMPPYILNKNEIQHMTSAIFQT 644 (965)
Q Consensus 622 R~~p~~~~t~~~i~~~~~~l~~~ 644 (965)
||+.+ ..++++|+.+++++.++
T Consensus 374 Ri~~a-~l~~~~i~~~~~ai~~v 395 (396)
T d2q7wa1 374 RVNVA-GMTPDNMAPLCEAIVAV 395 (396)
T ss_dssp EEEGG-GCCTTTHHHHHHHHHHH
T ss_pred EEEec-CCCHHHHHHHHHHHHHh
Confidence 78742 45777899888887654
|
| >d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Probable cysteine desulfurase SufS species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Probab=99.64 E-value=2.5e-14 Score=159.61 Aligned_cols=335 Identities=10% Similarity=0.069 Sum_probs=211.4
Q ss_pred ccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCC-------cHHHHHHHHHHHhhcCCC-CCeEEEcCChhHH
Q psy8199 255 RYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLT-------HKPVIKLSEKLSSLTQYK-LGHCFYGSDGASA 326 (965)
Q Consensus 255 ~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~-------~~~~~~la~~l~~~~~~~-~~~v~~~~sGseA 326 (965)
-|||..++ |--++.|++++.+.+.+.. .+..... .+..++..+.++++++.. .+.++|+++++++
T Consensus 24 iYld~a~~------~~~p~~v~~~~~~~~~~~~-~n~~s~~~~~~~~~~~~~e~aR~~ia~llga~~~~~i~~~~~tt~~ 96 (408)
T d1t3ia_ 24 VYLDNAAT------SQKPRAVLEKLMHYYENDN-ANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPREIVYTRNATEA 96 (408)
T ss_dssp EECBTTTC------CCCCHHHHHHHHHHHHHTC-CCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHH
T ss_pred EEeeCccc------cCCCHHHHHHHHHHHHhcC-CCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCcccEEeecchHHH
Confidence 58998765 3368999999998877631 1111111 234456777888999865 4679999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHH
Q psy8199 327 VEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARC 406 (965)
Q Consensus 327 ~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (965)
+..++....... .+++++|++.+..|++......... ......+..+|.+.... .
T Consensus 97 ~n~~~~~~~~~~----~~~g~~il~s~~e~~s~~~~~~~~~---------~~~g~~v~~~~~~~~~~------------~ 151 (408)
T d1t3ia_ 97 INLVAYSWGMNN----LKAGDEIITTVMEHHSNLVPWQMVA---------AKTGAVLKFVQLDEQES------------F 151 (408)
T ss_dssp HHHHHHHTHHHH----CCTTCEEEEETTCCGGGTHHHHHHH---------HHHCCEEEEECBCTTSS------------B
T ss_pred HHHHHhhccccc----cCCCCEEEeecccchhhhhhhhhhh---------hccCceEeeeecccccc------------c
Confidence 988776532211 1356778888777765422111111 11112344555433221 2
Q ss_pred HHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcce
Q psy8199 407 AIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDF 486 (965)
Q Consensus 407 d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDi 486 (965)
+.+.+++++ .++++.|.+.. +++.+|.++| +++|.++|+++|+++|+|-+|+ +|.. ..+.....+|+
T Consensus 152 ~~~~l~~~~---~~~t~lv~i~~-~~~~tG~~~p----~~~i~~~~~~~g~~~ivDa~q~-~g~~----~id~~~~~~D~ 218 (408)
T d1t3ia_ 152 DLEHFKTLL---SEKTKLVTVVH-ISNTLGCVNP----AEEIAQLAHQAGAKVLVDACQS-APHY----PLDVQLIDCDW 218 (408)
T ss_dssp CHHHHHHHC---CTTEEEEEEES-BCTTTCBBCC----HHHHHHHHHHTTCEEEEECTTT-TTTS----CCCHHHHTCSE
T ss_pred cHHHhhhcc---CCCceEEEEec-ccccccccCc----HHHHhhhhhccCceeeecccee-cccc----cccccccCCce
Confidence 456777665 46788899988 8999999998 8999999999999999999986 5432 22222345799
Q ss_pred eeec--cccCCCcccceeeeecHHHHHhhhcc--CCccc---------------ccccCCCCCCHHHHHHHHHHHHHHhc
Q psy8199 487 LCLS--KGITGGYLPLSLVMTTDKIYNSIYYK--NNINI---------------FLHSHSYSGNPLACCAALATLEIFNK 547 (965)
Q Consensus 487 vt~s--K~l~gG~~pig~v~~~~~i~~~~~~~--~~~~~---------------~~~~~t~~~~~~~~aaa~a~L~~~~~ 547 (965)
+++| |- .|+ ..+|+++.+++.......- +.... ....+| .|..+++++.++++++.+
T Consensus 219 ~~~s~hK~-~gp-~G~g~l~v~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~Gt--~~~~~~~~l~~al~~~~~ 294 (408)
T d1t3ia_ 219 LVASGHKM-CAP-TGIGFLYGKEEILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGT--PAIAEAIALGAAVDYLTD 294 (408)
T ss_dssp EEEEGGGT-TSC-TTCEEEEECHHHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSS--CCHHHHHHHHHHHHHHHH
T ss_pred EEeccccc-cCC-CCccccccchhhhhcCCceecCCcccccccccccccCCchhhhcCCc--HHHHHHHHHHHHHHHHHH
Confidence 9887 54 343 4689999999887544320 00000 011222 366677777788887654
Q ss_pred ---ccHHHHHHHHHHHHHHHHHcccCCCcee---eeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec----
Q psy8199 548 ---DNILQRISQDMKKITKALTSLITHPKII---NFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI---- 617 (965)
Q Consensus 548 ---~~~~~~~~~~~~~l~~~L~~l~~~~~i~---~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~---- 617 (965)
+++.++...+.+++.+.+........+. .-...+.++.+.+. . .....+...|.++||.++.+
T Consensus 295 ~g~~~i~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~iv~f~~~--~-----~~~~~v~~~L~~~gI~v~~G~~c~ 367 (408)
T d1t3ia_ 295 LGMENIHNYEVELTHYLWQGLGQIPQLRLYGPNPKHGDRAALASFNVA--G-----LHASDVATMVDQDGIAIRSGHHCT 367 (408)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHTCTTEEEESCCGGGSCBCSEEEEEET--T-----BCHHHHHHHHHTTTEECBCSCTTC
T ss_pred cCHHHHHHHHHHHHhHHhhhhccCccccccCCCccccCcceEEEEEeC--C-----CCHHHHHHHHhhCCcEEecCcccc
Confidence 3455666677777777666542111111 11123455666553 1 11345667788999987632
Q ss_pred ---------CCEEEEeCCcccCHHHHHHHHHhhhccc
Q psy8199 618 ---------GNTVYLMPPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 618 ---------~~~lR~~p~~~~t~~~i~~~~~~l~~~~ 645 (965)
.+.+||+++...|.+|++.+++.+++++
T Consensus 368 ~~~~~~~~~~g~vRiS~~~ynt~~did~li~~L~~~~ 404 (408)
T d1t3ia_ 368 QPLHRLFDASGSARASLYFYNTKEEIDLFLQSLQATI 404 (408)
T ss_dssp HHHHHHTTCCCCEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred cHHHHhhcCCccEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 3579999999999999999999887543
|
| >d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]
Probab=99.64 E-value=1.2e-15 Score=170.16 Aligned_cols=344 Identities=10% Similarity=-0.028 Sum_probs=198.1
Q ss_pred cccccccchhccCCCC--CHHHHHHHHHHHhhc-cc-cccCCCCcHHHHHHHHHHHhhcCC--CCCeEEEcC--ChhHHH
Q psy8199 256 YLDAISSWWVNLFGHS--NSYINKALKNQLNKL-EH-VMLSNLTHKPVIKLSEKLSSLTQY--KLGHCFYGS--DGASAV 327 (965)
Q Consensus 256 ylD~~~~~~~~~lGh~--~p~v~~av~~~~~~~-~~-~~~~~~~~~~~~~la~~l~~~~~~--~~~~v~~~~--sGseA~ 327 (965)
.||+..|.+..+-|.. .|.|.+|..+.+++. .+ |....+..+.++.+++.+.+..+. ..+.++.+. +|+.+.
T Consensus 30 ~InL~iG~~~d~~~~~~~~~~V~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~i~~~~~~~~~g~~ 109 (401)
T d7aata_ 30 KMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSL 109 (401)
T ss_dssp CEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHH
T ss_pred cEEccCCCCcCCCCCCCCCHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhccCCcccCcCceEEeccchHHHHH
Confidence 5888777544445543 477888877766553 32 555566777888888887765431 234454433 233333
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHH
Q psy8199 328 EVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCA 407 (965)
Q Consensus 328 ~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 407 (965)
.+...+++.+. .+++.|++.+++|+++.......+. ..+.+|........ .+
T Consensus 110 ~~~~~~~~~l~-----~pGd~Vlv~~P~y~~y~~~~~~~g~-------------~~~~~~~~~~~~~~----------~~ 161 (401)
T d7aata_ 110 RVGANFLQRFF-----KFSRDVYLPKPSWGNHTPIFRDAGL-------------QLQAYRYYDPKTCS----------LD 161 (401)
T ss_dssp HHHHHHHHHHC-----TTCCEEEEEESCCTTHHHHHHHTTC-------------EEEEEECEETTTTE----------EC
T ss_pred HHHHHhhHhhc-----CCCceEEEecCCCcchhhHHHHcCC-------------eEEEEecccccccc----------cc
Confidence 33322232221 3678999999999998554444433 22333332111111 25
Q ss_pred HHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccc-c---ccccCCC
Q psy8199 408 IFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFF-A---CEHAEIW 483 (965)
Q Consensus 408 ~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~-~---~~~~~~~ 483 (965)
++.+.+.+....+++.++++.+ .+|++|.+. +.+.+++|.++|++|++++|.||+|.++...+... . .......
T Consensus 162 ~~~~~~~~~~~~~~~~~iii~~-p~NPTG~~~-s~e~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~ 239 (401)
T d7aata_ 162 FTGAMEDISKIPEKSIILLHAC-AHNPTGVDP-RQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQG 239 (401)
T ss_dssp HHHHHHHHTTSCTTCEEEEESS-SCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTT
T ss_pred HHHHHHHHhcCCCceEEEEecC-CCCCccccC-CHHHHHHHHHHHhcceEEEEEeccchhhhcCCcccchhhhhhhhhhh
Confidence 6667777765555667777776 699999876 88889999999999999999999999986554311 1 1111222
Q ss_pred ccee---eeccccCCCcccceeeeecHHHHHhhhccCC-cccccccCCCCCCHHHHHHHHHHHHH--Hh------cccHH
Q psy8199 484 PDFL---CLSKGITGGYLPLSLVMTTDKIYNSIYYKNN-INIFLHSHSYSGNPLACCAALATLEI--FN------KDNIL 551 (965)
Q Consensus 484 pDiv---t~sK~l~gG~~pig~v~~~~~i~~~~~~~~~-~~~~~~~~t~~~~~~~~aaa~a~L~~--~~------~~~~~ 551 (965)
++++ ++||.++-.+|++|+++++.++.+....-.. ..........+.+.+.++++...|+- +. -+...
T Consensus 240 ~~~~~~~s~sk~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~ 319 (401)
T d7aata_ 240 IDVVLSQSYAKNMGLYGERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMA 319 (401)
T ss_dssp CCCEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred cccceeEeccccceeeccccceeecchHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 3333 6789665433999999998766554322000 00001112234455666666555531 00 02234
Q ss_pred HHHHHHHHHHHHHHHcccCCCceeeeeceeEEEEE-EEeecCccchhhHHHHHHHH-HHHcCcEEeecCCEEEEeCCccc
Q psy8199 552 QRISQDMKKITKALTSLITHPKIINFRQKGMIWAF-DVIIEDPEQIETFSKKFFVA-ALKNELLLRPIGNTVYLMPPYIL 629 (965)
Q Consensus 552 ~~~~~~~~~l~~~L~~l~~~~~i~~v~g~G~~~~i-~~~~~~~~~~~~~~~~~~~~-l~~~Gi~~~~~~~~lR~~p~~~~ 629 (965)
++++++.+.+.+.|+++.-...+..+...|.|+.+ .+. . +++++ +.++||++.|+ +||+.+ ..
T Consensus 320 ~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~G~F~~~~ls-------~----e~~~~L~~e~gV~~~pg---~Ris~a-~~ 384 (401)
T d7aata_ 320 DRIISMRTQLVSNLKKEGSSHNWQHITDQIGMFCFTGLK-------P----EQVERLTKEFSIYMTKD---GRISVA-GV 384 (401)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSCCHHHHHCCSSEEECCCC-------H----HHHHHHHHHHCEECCTT---CEEEGG-GC
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcceECCCCeEEEecCCC-------H----HHHHHHHHhCCEEECCC---cEEEec-cC
Confidence 45556666666666654211123334455544433 221 1 23344 45789999886 488832 36
Q ss_pred CHHHHHHHHHhhhcc
Q psy8199 630 NKNEIQHMTSAIFQT 644 (965)
Q Consensus 630 t~~~i~~~~~~l~~~ 644 (965)
++++|+.+.+++.++
T Consensus 385 ~~~~i~~la~ai~~v 399 (401)
T d7aata_ 385 ASSNVGYLAHAIHQV 399 (401)
T ss_dssp CTTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 777888888877654
|
| >d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]
Probab=99.62 E-value=5.2e-15 Score=165.68 Aligned_cols=354 Identities=10% Similarity=-0.030 Sum_probs=200.5
Q ss_pred ccccccccchhccCCCC--CHHHHHHHHHHHhhc--cc-cccCCCCcHHHHHHHHHHHhhcCC--CCC--eEEEcCChhH
Q psy8199 255 RYLDAISSWWVNLFGHS--NSYINKALKNQLNKL--EH-VMLSNLTHKPVIKLSEKLSSLTQY--KLG--HCFYGSDGAS 325 (965)
Q Consensus 255 ~ylD~~~~~~~~~lGh~--~p~v~~av~~~~~~~--~~-~~~~~~~~~~~~~la~~l~~~~~~--~~~--~v~~~~sGse 325 (965)
..||+.-|.....-|.. .|.|.+|.+..+.+. .+ |....+..+.++.+++.+.+..+. ..+ .+..+.+++.
T Consensus 31 ~~Inl~iG~~~d~~g~~~~~~~V~~a~~~~~~~~~~~~~Y~p~~G~p~lreaia~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (412)
T d1ajsa_ 31 RKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSLNHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTG 110 (412)
T ss_dssp TCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHH
T ss_pred CcEEeeCCCCcCCCCCCCCcHHHHHHHHHHHhCCCcCCCCCCCCCCHHHHHHHHHHHhccCCcccccccceeecccchhh
Confidence 34788777544445533 467777765544332 22 444556666677777776654321 123 4566888888
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHH
Q psy8199 326 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIAR 405 (965)
Q Consensus 326 A~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (965)
++..+...+........ .+++.|++.+++|.++.......++.. +...+.++.....
T Consensus 111 ~~~~~~~~l~~~~~~~~-~pGd~Vlv~~P~y~~y~~~~~~~G~~~------------v~~~~~~~~~~~~---------- 167 (412)
T d1ajsa_ 111 ALRIGAEFLARWYNGTN-NKDTPVYVSSPTWENHNGVFTTAGFKD------------IRSYRYWDTEKRG---------- 167 (412)
T ss_dssp HHHHHHHHHHHHSSSSS-CCCSCEEEEESCCTHHHHHHHHTTCSC------------EEEEECEETTTTE----------
T ss_pred HHHHHHHHHHHHhhhcC-CCCCEEEEeCCcchhhHHHHHHcCCeE------------EEeeccccccccc----------
Confidence 88888776544322112 367889999999988754444433311 1111221111111
Q ss_pred HHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccccc---ccc-cccC
Q psy8199 406 CAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKF---FAC-EHAE 481 (965)
Q Consensus 406 ~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~---~~~-~~~~ 481 (965)
.|++++++.+....++..++++.+ .+|++|.+. +.+.+++|.++|++||+++|+||+|.++.+.+.. ++. ....
T Consensus 168 ~d~~~~~~~~~~~~~~~~~il~~~-P~NPTG~v~-s~e~~~~i~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~ 245 (412)
T d1ajsa_ 168 LDLQGFLSDLENAPEFSIFVLHAC-AHNPTGTDP-TPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVS 245 (412)
T ss_dssp ECHHHHHHHHHHSCTTCEEEEESS-SCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHH
T ss_pred ccHHHHHHHHHhccCCcEEEEecC-CCCCcCCCC-CHHHHHHHHHHHhhCCEEEEecHhhhhhhcCCcccchhhhhhhhh
Confidence 255666666655556667777766 699999766 8888999999999999999999999988655431 111 1111
Q ss_pred CCcc-e--eeeccccCCCcccceeeeecHHHHHhhhcc-CCcccccccCCCCCCHHHHHHHHHHHHHH------hc--cc
Q psy8199 482 IWPD-F--LCLSKGITGGYLPLSLVMTTDKIYNSIYYK-NNINIFLHSHSYSGNPLACCAALATLEIF------NK--DN 549 (965)
Q Consensus 482 ~~pD-i--vt~sK~l~gG~~pig~v~~~~~i~~~~~~~-~~~~~~~~~~t~~~~~~~~aaa~a~L~~~------~~--~~ 549 (965)
..+. + .++||.++..++++|++++..+..+.+..- ........+...+.+.++++++.+.+... .+ +.
T Consensus 246 ~~~~~~~~~s~sk~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (412)
T d1ajsa_ 246 EGFELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMQKIVRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKT 325 (412)
T ss_dssp TTCCEEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHH
T ss_pred hcccccccccccccccCCCCCccccccchhHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 2222 2 257887765448999999875443332210 00000111223345566666666555311 00 22
Q ss_pred HHHHHHHHHHHHHHHHHcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecCCEEEEeCCccc
Q psy8199 550 ILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIGNTVYLMPPYIL 629 (965)
Q Consensus 550 ~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~lR~~p~~~~ 629 (965)
..++++++.+.+.+.|+++.-...+..+...|.|+.+ +. . .. +.+.+.+.++||++.|++ ||+.. ..
T Consensus 326 ~~~~l~~~r~~l~~~L~~~~~~~~~~~i~~~~G~F~~-~~--l---s~---~~v~~L~~e~gV~~vpg~---Ri~~a-g~ 392 (412)
T d1ajsa_ 326 MADRILSMRSELRARLEALKTPGTWNHITDQIGMFSF-TG--L---NP---KQVEYLINQKHIYLLPSG---RINMC-GL 392 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSSCCHHHHHCCSSEEE-CC--C---CH---HHHHHHHHTTCEECCTTS---EEEGG-GC
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCeeeecCCCeEEEe-cC--C---CH---HHHHHHHHhCCEEEeCCC---eEEec-cC
Confidence 3455666666667777665211122334444444433 11 1 01 223344568899998864 88832 35
Q ss_pred CHHHHHHHHHhhhcccc
Q psy8199 630 NKNEIQHMTSAIFQTFN 646 (965)
Q Consensus 630 t~~~i~~~~~~l~~~~~ 646 (965)
+++.++.+.+++.+++.
T Consensus 393 ~~~~i~~~a~aI~~av~ 409 (412)
T d1ajsa_ 393 TTKNLDYVATSIHEAVT 409 (412)
T ss_dssp CTTTHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 77789988888776543
|
| >d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]
Probab=99.61 E-value=1.6e-14 Score=161.40 Aligned_cols=344 Identities=10% Similarity=-0.015 Sum_probs=197.7
Q ss_pred cccccccchhccCCCC--CHHHHHHHHHHHhh--ccc-cccCCCCcHHHHHHHHHHHhhcCC--CCCe--EEEcCChhHH
Q psy8199 256 YLDAISSWWVNLFGHS--NSYINKALKNQLNK--LEH-VMLSNLTHKPVIKLSEKLSSLTQY--KLGH--CFYGSDGASA 326 (965)
Q Consensus 256 ylD~~~~~~~~~lGh~--~p~v~~av~~~~~~--~~~-~~~~~~~~~~~~~la~~l~~~~~~--~~~~--v~~~~sGseA 326 (965)
.||+..|.....-|.. .|.|.+|.+..... ..+ |....+..+.++.+++.+.+..+. ..+. +.-+.+|..+
T Consensus 31 kInL~iG~~~d~~g~~~~~~~V~~A~~~l~~~~~~~~~Y~p~~G~~~lr~aia~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (412)
T d1yaaa_ 31 KVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSYNHEYLGITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTGA 110 (412)
T ss_dssp CEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHH
T ss_pred cEEeecCCCcCCCCCCCCcHHHHHHHHHHHhCcccCCCCCCCCCCHHHHHHHHHHHhcccCccccccceeEEecccchhH
Confidence 4888777544555644 37777775443322 122 444455666777777776654421 1222 2233445555
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHH
Q psy8199 327 VEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARC 406 (965)
Q Consensus 327 ~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (965)
...++.+.... .+++.|++.+++|..+.......++ ....+|........ .
T Consensus 111 ~~~~~~~~~~~------~~gd~Vlip~P~~~~y~~~~~~~g~-------------~~~~~~~~~~~~~~----------~ 161 (412)
T d1yaaa_ 111 LHISAKFFSKF------FPDKLVYLSKPTWANHMAIFENQGL-------------KTATYPYWANETKS----------L 161 (412)
T ss_dssp HHHHHHHHHHH------CTTCCEEEEESCCTTHHHHHHTTTC-------------CEEEEECEETTTTE----------E
T ss_pred HHHHHHHHhcc------CCCCEEecccccCchhHHHHHHcCC-------------ceeccccccccccc----------c
Confidence 54444433222 3678999999999888555544443 22333321111100 2
Q ss_pred HHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccc-c------ccc
Q psy8199 407 AIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFF-A------CEH 479 (965)
Q Consensus 407 d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~-~------~~~ 479 (965)
+.+.+++.+...++...++++.+ .+|++|.+. +++.+++|.++|+++++++|.||+|.+|...+... + ...
T Consensus 162 ~~~~~~~~~~~~~~~~~~i~i~~-P~NPTG~~~-s~~~~~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~ 239 (412)
T d1yaaa_ 162 DLNGFLNAIQKAPEGSIFVLHSC-AHNPTGLDP-TSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEK 239 (412)
T ss_dssp CHHHHHHHHHHSCTTCEEEEECS-SCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHH
T ss_pred cchhhhcccccCCCceEEEEecC-CCCCccccC-CHHHHHHHHhhhccCCEEEeecceeeecccCCcccchhhhhhhhhc
Confidence 45666666666566667777776 799999766 88889999999999999999999999986655311 1 112
Q ss_pred cCCCccee---eeccccCCCcccceeeeecHHHHHhhhcc-----CCcccccccCCCCCCHHHHHHHHHHHHHHh-----
Q psy8199 480 AEIWPDFL---CLSKGITGGYLPLSLVMTTDKIYNSIYYK-----NNINIFLHSHSYSGNPLACCAALATLEIFN----- 546 (965)
Q Consensus 480 ~~~~pDiv---t~sK~l~gG~~pig~v~~~~~i~~~~~~~-----~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~----- 546 (965)
.+..+.++ ++||.++-.++++|+++++.++++.+..- ............+.+.+++.++...++--.
T Consensus 240 ~~~~~~~i~~~s~SK~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~ 319 (412)
T d1yaaa_ 240 LSTVSPVFVCQSFAKNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQW 319 (412)
T ss_dssp TTTTCCEEEEEECTTTSCCGGGCEEEEEEECCSCTTHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHH
T ss_pred cccCCCeEEEEecCCccccCcCceEEEEEchhhhhhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhcChHHHHHH
Confidence 23334444 57997664229999999875543222110 000011223445667778888777764210
Q ss_pred ---cccHHHHHHHHHHHHHHHHHcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHH-HHHcCcEEeecCCEEE
Q psy8199 547 ---KDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVA-ALKNELLLRPIGNTVY 622 (965)
Q Consensus 547 ---~~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~-l~~~Gi~~~~~~~~lR 622 (965)
-+...+.++++++.+.+.|+++.....+..+..+|.|+.+.-. + . +++++ +.++||++.|++ |
T Consensus 320 ~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~~~~~~~gG~F~~~~l--s----~----e~~~~L~~e~~V~~~~g~---R 386 (412)
T d1yaaa_ 320 HKDMVTMSSRITKMRHALRDHLVKLGTPGNWDHIVNQCGMFSFTGL--T----P----QMVKRLEETHAVYLVASG---R 386 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCTHHHHCCSSEEECCC--C----H----HHHHHHHHHHCEECCTTS---E
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCceeCCCceEEEecCc--C----H----HHHHHHHHhCCEEECCCC---E
Confidence 1234455666667777777665211123345555555544211 1 1 23334 457899888753 7
Q ss_pred EeCCcccCHHHHHHHHHhhhcc
Q psy8199 623 LMPPYILNKNEIQHMTSAIFQT 644 (965)
Q Consensus 623 ~~p~~~~t~~~i~~~~~~l~~~ 644 (965)
|+.+ ..+++.++.+.+++.++
T Consensus 387 is~~-g~~~~~i~~l~~ai~~v 407 (412)
T d1yaaa_ 387 ASIA-GLNQGNVEYVAKAIDEV 407 (412)
T ss_dssp EEGG-GCCTTTHHHHHHHHHHH
T ss_pred EEec-cCCHHHHHHHHHHHHHH
Confidence 7732 36677788877776653
|
| >d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tyrosine phenol-lyase species: Erwinia herbicola [TaxId: 549]
Probab=99.60 E-value=9.5e-15 Score=164.15 Aligned_cols=346 Identities=10% Similarity=0.041 Sum_probs=190.8
Q ss_pred cccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHH
Q psy8199 254 KRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKM 333 (965)
Q Consensus 254 ~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~ 333 (965)
..+||+.+-.+.. ...+++..++..+. ....-++...+|.+++++++ +.+.+++++||+.|+..|+++
T Consensus 42 ~v~iDl~sDs~t~-------am~~~~~aa~~~GD---d~Y~~dpt~~~lE~~~a~l~--G~e~al~~~SGt~An~~a~~~ 109 (456)
T d1c7ga_ 42 DIYIDLLTDSGTN-------AMSDKQWAGMMIGD---EAYAGSENFYHLEKTVKELF--GFKHIVPTHQGRGAENLLSQL 109 (456)
T ss_dssp GCSEECSCSSSCC-------CEEHHHHHHTTSCC---CCSSSCHHHHHHHHHHHHHH--CCSEEEEESSHHHHHHHHHHH
T ss_pred ceeeEcccCCCcc-------cchHHHHHHHhccc---hhccCCchHHHHHHHHHHHh--CCCeEEECCCHHHHHHHHHHH
Confidence 4678887765421 12333333333221 12345788899999999999 688999999999999999987
Q ss_pred HHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHH
Q psy8199 334 SFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEI 413 (965)
Q Consensus 334 a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~ 413 (965)
..+ +++.|+. ...|+.+.......++.+........... . .+..... ..|+++|++
T Consensus 110 l~~--------~Gd~Vi~-~~~f~~~~~~i~~~g~~~~~~~~~~~~~~-~----~~~~~~~----------~~d~~~le~ 165 (456)
T d1c7ga_ 110 AIK--------PGQYVAG-NMYFTTTRFHQEKNGATFVDIVRDEAHDA-S----LNLPFKG----------DIDLNKLAT 165 (456)
T ss_dssp HCC--------TTEEEEE-SSCCHHHHHHHHHTTEEEEECBCGGGGCT-T----CCCSCTT----------CBCHHHHHH
T ss_pred hcC--------CCCeEec-CcchHHHHHHHHHcCceeeeccccccccc-c----ccCCccc----------cCCHHHHHH
Confidence 632 4455543 33343322111111111000000000000 0 0000000 137899999
Q ss_pred HHHhCC-CcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcc-cc-cccccccCC--------
Q psy8199 414 LLKKNH-NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRT-GK-FFACEHAEI-------- 482 (965)
Q Consensus 414 ~l~~~~-~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~-G~-~~~~~~~~~-------- 482 (965)
+|+++. +.++.+++|. .+|.+|..+.+.+++++|+++|++||+.+|.|+++. +|-. .. .....+.+.
T Consensus 166 ~I~~~~~~~~~~i~~e~-~~n~~gG~~~~~~~l~~i~~~a~~~~~~~~~D~a~~-~~~a~~~~~~~~~~~~~~i~~i~~~ 243 (456)
T d1c7ga_ 166 LIKEKGAENIAYICLAV-TVNLAGGQPVSMANMRAVHEMASTYGIKIFYDATRC-VENAYFIKEQEAGYENVSIKDIVHE 243 (456)
T ss_dssp HHHHHCGGGEEEEEEES-SBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTH-HHHHHHHHHHSTTCTTSCHHHHHHH
T ss_pred HhhhcCCccceeEEeee-cccccccceecHHHHHHHHHHHHHcCCEEEEEcchh-hcchhhhcccccccCCCChhhhccc
Confidence 998763 5688888888 788888888899999999999999999999999975 2110 00 000001111
Q ss_pred ---Ccceeeec--cccCCCcccce-eeeec-HHHHHhhhccCCcccccccCCCCCC-HHHHHHHHHHHHHHhcccHHHHH
Q psy8199 483 ---WPDFLCLS--KGITGGYLPLS-LVMTT-DKIYNSIYYKNNINIFLHSHSYSGN-PLACCAALATLEIFNKDNILQRI 554 (965)
Q Consensus 483 ---~pDivt~s--K~l~gG~~pig-~v~~~-~~i~~~~~~~~~~~~~~~~~t~~~~-~~~~aaa~a~L~~~~~~~~~~~~ 554 (965)
..|++++| |.+++ +.| +++.+ +++++..+.. ........++++. ...+.++...|....+.+..++.
T Consensus 244 ~~~~ad~~s~s~~K~~~~---~~GG~i~~~~~~l~~~~r~~--~~~~~g~~~~g~~~~~~~~a~a~~l~e~~~~~~l~~r 318 (456)
T d1c7ga_ 244 MFSYADGCTMSGKKDCLV---NIGGFLCMNDEEMFSAAKEL--VVVYEGMPSYGGLAGRDMEAMAIGLREAMQYEYIEHR 318 (456)
T ss_dssp HHTTCSEEEEETTTTTCC---SSCEEEEESCHHHHHHHHHH--HHHHTCCTTTTTCCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred cccccccEEEeccccccc---cceeEEEcCCHHHHHHHHHh--ccccCCCcccchhhHHHHHHHHHHHHHhcCHHHHHHH
Confidence 25777765 54443 444 44444 4555544320 0001122334333 33333334445444445566666
Q ss_pred HHHHHHHHHHHHcccCCCceeeeeceeE-EEEEEEee---cCccchhhHHHHHHHHHHHcCcEEeec-------------
Q psy8199 555 SQDMKKITKALTSLITHPKIINFRQKGM-IWAFDVII---EDPEQIETFSKKFFVAALKNELLLRPI------------- 617 (965)
Q Consensus 555 ~~~~~~l~~~L~~l~~~~~i~~v~g~G~-~~~i~~~~---~~~~~~~~~~~~~~~~l~~~Gi~~~~~------------- 617 (965)
.++.++|.++|.+. ++..+.+.|. ...++... .-..............+.+.||...+.
T Consensus 319 ~~~~~~L~e~L~~~----g~~vv~p~g~~~v~vda~~~~~~i~~~~~~~~~~~~~l~~~~GIr~~~~g~~~~~~~~~~g~ 394 (456)
T d1c7ga_ 319 VKQVRYLGDKLREA----GVPIVEPTGGHAVFLDARRFCPHLTQDQFPAQSLAASIYMETGVRSMERGIVSAGRSKETGE 394 (456)
T ss_dssp HHHHHHHHHHHHHT----TCCBCSSCCSSEEEEEHHHHCTTSCGGGCHHHHHHHHHHHHHSEECEEESHHHHCBCSSSCC
T ss_pred HHHHHHHHHHHHhc----cCCcccCCCCcceeEechhhccCCCcccccHHHHHHHHHHHhCeeecccCccccccCCcccC
Confidence 77788999999876 2333333333 33333210 000000011122344456778865421
Q ss_pred -----CCEEEEeCC-cccCHHHHHHHHHhhhcccc
Q psy8199 618 -----GNTVYLMPP-YILNKNEIQHMTSAIFQTFN 646 (965)
Q Consensus 618 -----~~~lR~~p~-~~~t~~~i~~~~~~l~~~~~ 646 (965)
.+.+||+.| ...|++++|.+++++.+...
T Consensus 395 ~~~~~~e~vRLaip~~~~T~e~iD~Vae~i~~v~~ 429 (456)
T d1c7ga_ 395 NHRPKLETVRLTIPRRVYTYAHMDVVADGIIKLYQ 429 (456)
T ss_dssp BCCCSCCEEEEECCTTSCCHHHHHHHHHHHHHHHT
T ss_pred ccCCccceEEEecCcccCCHHHHHHHHHHHHHHHh
Confidence 146999977 46699999999888876543
|
| >d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Kynureninase species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.57 E-value=4.7e-14 Score=157.54 Aligned_cols=340 Identities=10% Similarity=0.063 Sum_probs=206.6
Q ss_pred CCcccccccccchhccCCCCCHHHHHHHHHHHhhcc-c--c--ccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHH
Q psy8199 252 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLE-H--V--MLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASA 326 (965)
Q Consensus 252 dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~-~--~--~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA 326 (965)
++..|||..+ .|..+..|.+|+.+.+.+.. . . .......+..++..++++++++.+.++++|++++|++
T Consensus 26 ~~~iYLd~as------~g~~p~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~e~~R~~iA~llga~~~ei~~~~~~T~~ 99 (404)
T d1qz9a_ 26 EGVIYLDGNS------LGARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIGARDGEVVVTDTTSIN 99 (404)
T ss_dssp TTCEECCTTT------SCCCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTTCCTTSEEECSCHHHH
T ss_pred CCCEEcCCcc------cccCCHHHHHHHHHHHHHHhcccCcccccchhHHHHHHHHHHHHHHHhCCCCCcEEEecCchHH
Confidence 4567899755 35568889999998875521 1 0 0111223556788899999999899999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHH
Q psy8199 327 VEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARC 406 (965)
Q Consensus 327 ~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (965)
+..++..+....... ...+.+++.+..++........... ............ .
T Consensus 100 ~~~~~~~~~~~~~~~--~~~~~vi~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~-----------------~ 152 (404)
T d1qz9a_ 100 LFKVLSAALRVQATR--SPERRVIVTETSNFPTDLYIAEGLA--------DMLQQGYTLRLV-----------------D 152 (404)
T ss_dssp HHHHHHHHHHHHHHH--STTCCEEEEETTSCHHHHHHHHHHH--------HHHCSSCEEEEE-----------------S
T ss_pred HHHHhhhhhhhhccc--CCCcEEEEeccccchHHHHHHhhhh--------eeeeeceecccc-----------------c
Confidence 988876543322111 2345566666555543211111000 000000000000 1
Q ss_pred HHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcce
Q psy8199 407 AIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDF 486 (965)
Q Consensus 407 d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDi 486 (965)
+.+++++++ .+++..|.+.. +++.+|.+.| +++|.++|+++|+++++|-+|+ +|.. ........+|+
T Consensus 153 ~~~~~~~~i---~~~T~lV~i~~-v~~~tG~~~p----v~~i~~~~~~~~~~~~vD~~q~-~g~~----~~~~~~~~~d~ 219 (404)
T d1qz9a_ 153 SPEELPQAI---DQDTAVVMLTH-VNYKTGYMHD----MQALTALSHECGALAIWDLAHS-AGAV----PVDLHQAGADY 219 (404)
T ss_dssp SGGGHHHHC---STTEEEEEEES-BCTTTCBBCC----HHHHHHHHHHHTCEEEEECTTT-TTTS----CCCHHHHTCSE
T ss_pred cchhHHHhc---CCCceEEEEec-ccccccceec----HHHHhccccccccceeEEeecc-cccc----ccccccccceE
Confidence 234555665 46788899988 9999999999 9999999999999999999996 5422 22233345677
Q ss_pred eeec--cccCCCcccceeeeecHHHHHhhhccCC-----ccc------------ccccCCCCCCHHHHHHHHHHHHHHhc
Q psy8199 487 LCLS--KGITGGYLPLSLVMTTDKIYNSIYYKNN-----INI------------FLHSHSYSGNPLACCAALATLEIFNK 547 (965)
Q Consensus 487 vt~s--K~l~gG~~pig~v~~~~~i~~~~~~~~~-----~~~------------~~~~~t~~~~~~~~aaa~a~L~~~~~ 547 (965)
+++| |.+.+|....|++..+++..+.+..... ... .........+..+.....++++.+.+
T Consensus 220 ~~~s~~K~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (404)
T d1qz9a_ 220 AIGCTYKYLNGGPGSQAFVWVSPQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQ 299 (404)
T ss_dssp EEECSSSTTCCCTTCCCEEEECTTTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTT
T ss_pred EEEechhhcccCCceEEEEEechhhhhhCCccccccCCccccccccccccccccchhhhhhhccchhHHHHHHHHHHHHH
Confidence 7665 7665542235666677666544332100 000 00011123456666767777766654
Q ss_pred ---ccHHHHHHHHHHHHHHHHHcccCCCceeee-----eceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEee-cC
Q psy8199 548 ---DNILQRISQDMKKITKALTSLITHPKIINF-----RQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRP-IG 618 (965)
Q Consensus 548 ---~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v-----~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~-~~ 618 (965)
+.+.++...+.+.+...+..+...+++..+ ...|.++++.+. + ...+.+.|.++||++.. .+
T Consensus 300 ~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~i~~p~~~~~r~~~vsf~~~--~-------~~~v~~~L~~~gi~~~~r~~ 370 (404)
T d1qz9a_ 300 TDMASLRRKSLALTDLFIELVEQRCAAHELTLVTPREHAKRGSHVSFEHP--E-------GYAVIQALIDRGVIGDYREP 370 (404)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHTTSCCEECSCSSGGGBCSEEEEECT--T-------HHHHHHHHHTTTEECEEETT
T ss_pred hhHHHHHHHHHHhHHHHHHHHHhhccCCCEEEECCCCccceeeEEEEecC--C-------HHHHHHHHHHCCCEEeecCC
Confidence 234444555555555555544444444322 233556666543 2 34577889999998754 35
Q ss_pred CEEEEeC-CcccCHHHHHHHHHhhhcccc
Q psy8199 619 NTVYLMP-PYILNKNEIQHMTSAIFQTFN 646 (965)
Q Consensus 619 ~~lR~~p-~~~~t~~~i~~~~~~l~~~~~ 646 (965)
+.|||+| ++..|.+||+++++.+.+.+.
T Consensus 371 ~~lRiS~~h~ynt~~did~~~~~L~~vl~ 399 (404)
T d1qz9a_ 371 RIMRFGFTPLYTTFTEVWDAVQILGEILD 399 (404)
T ss_dssp TEEEEECCTTTCCHHHHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCCHHHHHHHHHHHHHHHH
Confidence 7999999 678999999999998877553
|
| >d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Paracoccus denitrificans [TaxId: 266]
Probab=99.57 E-value=9.6e-15 Score=162.58 Aligned_cols=342 Identities=10% Similarity=-0.012 Sum_probs=195.1
Q ss_pred cccccccchhccCCCC--CHHHHHHHHHHHhhc-cc-cccCCCCcHHHHHHHHHHHhhcCC-CCCeEEEcCChhHHHHHH
Q psy8199 256 YLDAISSWWVNLFGHS--NSYINKALKNQLNKL-EH-VMLSNLTHKPVIKLSEKLSSLTQY-KLGHCFYGSDGASAVEVA 330 (965)
Q Consensus 256 ylD~~~~~~~~~lGh~--~p~v~~av~~~~~~~-~~-~~~~~~~~~~~~~la~~l~~~~~~-~~~~v~~~~sGseA~~~A 330 (965)
-||+..|..-..-|.. .|.|.+|+++.+++. .+ |....+..+.++.+++.+.+.... .....+.+.+|+.+...+
T Consensus 28 ~InL~iG~~~d~~g~~~~~~~V~~A~~~~~~~~~~~~Y~p~~G~~~lr~aia~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 107 (394)
T d2ay1a_ 28 KIDLGVGVYKDATGHTPIMRAVHAAEQRMLETETTKTYAGLSGEPEFQKAMGELILGDGLKSETTATLATVGGTGALRQA 107 (394)
T ss_dssp CEECCCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCSSCCHHHHHHHHHHHHGGGCCGGGEEEEEEEHHHHHHHHH
T ss_pred CEEccCCCccCCCCCCCCCHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhccccccccccceeccCchHHHHHH
Confidence 4677666444445544 588999988877654 22 555556777788888887765432 223556677777776666
Q ss_pred HHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHH
Q psy8199 331 LKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFD 410 (965)
Q Consensus 331 l~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 410 (965)
+.+.... .+++.|++.+++|-.+.......+. ..+.+|........ .+.++
T Consensus 108 ~~~~~~~------~~gd~V~~p~p~~~~y~~~~~~~g~-------------~~v~~~~~~~~~~~----------~~~~~ 158 (394)
T d2ay1a_ 108 LELARMA------NPDLRVFVSDPTWPNHVSIMNFMGL-------------PVQTYRYFDAETRG----------VDFEG 158 (394)
T ss_dssp HHHHHHH------CTTCCEEEEESCCHHHHHHHHHHTC-------------CEEEEECEETTTTE----------ECHHH
T ss_pred HHHhhhc------CCceEEEEecccccchHHHHHHcCC-------------EEEEecccchhccc----------ccchh
Confidence 6544333 4678899999999776433333222 23333321111000 13445
Q ss_pred HHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccc--cccc-cCCCcce-
Q psy8199 411 LEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFF--ACEH-AEIWPDF- 486 (965)
Q Consensus 411 le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~--~~~~-~~~~pDi- 486 (965)
+++......++..++++.+ .+|++|.+. +.+.+++|.++|++|++++|.||+|.+|...+... .... .....++
T Consensus 159 ~~~~~~~~~~~~~i~~~~~-p~NPTG~~~-s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~ 236 (394)
T d2ay1a_ 159 MKADLAAAKKGDMVLLHGC-CHNPTGANL-TLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVL 236 (394)
T ss_dssp HHHHHHTCCTTCEEEEESS-SCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEE
T ss_pred HHHHHhhcccCcEEEEeCC-CCCCCCCCC-CHHHHHHHHHHhhcceEEEEEeccchhhcccccccchhhhhhhhhccccc
Confidence 5555555455566677666 699999765 88889999999999999999999999986554321 1111 1111222
Q ss_pred --eeeccccCCCcccceeeeecHHHHHhhhccCCcccccccCCC-CCCHHHHHHHHHHHHH--Hh------cccHHHHHH
Q psy8199 487 --LCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSY-SGNPLACCAALATLEI--FN------KDNILQRIS 555 (965)
Q Consensus 487 --vt~sK~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~-~~~~~~~aaa~a~L~~--~~------~~~~~~~~~ 555 (965)
.++||.++..+|++|++++.....+....-.........+++ +.+...++.+...+.. +. -+.+.++++
T Consensus 237 ~~~s~sk~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 316 (394)
T d2ay1a_ 237 IAASCSKNFGIYRERTGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGML 316 (394)
T ss_dssp EEEECTTTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccCCcccccchhhchhHHHHHHHhhhhhHhhhcccccchhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 267887654338999999876655433220000001111222 2333344444333321 10 012445566
Q ss_pred HHHHHHHHHHHcccCCCceeeeece-eEEEEEEEeecCccchhhHHHHHHHHH-HHcCcEEeecCCEEEEeCCcccCHHH
Q psy8199 556 QDMKKITKALTSLITHPKIINFRQK-GMIWAFDVIIEDPEQIETFSKKFFVAA-LKNELLLRPIGNTVYLMPPYILNKNE 633 (965)
Q Consensus 556 ~~~~~l~~~L~~l~~~~~i~~v~g~-G~~~~i~~~~~~~~~~~~~~~~~~~~l-~~~Gi~~~~~~~~lR~~p~~~~t~~~ 633 (965)
++.+.+.+.|+++.....+..+..+ |+|..+.+. . ++.++| .++||++.|++ ||+.+ .++++.
T Consensus 317 ~~r~~l~~~L~~~~~~~~~~~~~~~~G~F~~~~ls-------~----~~~~~L~~~~~V~~~~g~---Ri~~a-~l~~~~ 381 (394)
T d2ay1a_ 317 RLREQLAGELRDLSGSDRFGFVAEHRGMFSRLGAT-------P----EQVKRIKEEFGIYMVGDS---RINIA-GLNDNT 381 (394)
T ss_dssp HHHHHHHHHHHHHHTSSTTTHHHHCCSSEEECCCC-------H----HHHHHHHHHHCEECCTTC---EEEGG-GCCTTT
T ss_pred HHHHHHHHHHHHhCCCCceeeECCCceeEEecCcC-------H----HHHHHHHHhCCEEecCCC---EEEec-CCCHHH
Confidence 6666777777655211122323334 544443321 1 233444 47899998853 77743 467788
Q ss_pred HHHHHHhhhc
Q psy8199 634 IQHMTSAIFQ 643 (965)
Q Consensus 634 i~~~~~~l~~ 643 (965)
++.+.+++.+
T Consensus 382 i~~l~~ai~~ 391 (394)
T d2ay1a_ 382 IPILARAIIE 391 (394)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888887765
|
| >d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Escherichia coli [TaxId: 562]
Probab=99.56 E-value=7e-15 Score=163.70 Aligned_cols=344 Identities=12% Similarity=-0.025 Sum_probs=190.5
Q ss_pred ccccccchhccCCCC--CHHHHHHHHHHHhhc---cccccCCCCcHHHHHHHHHHHhhcCC--CCCeEEEcCChhHHHHH
Q psy8199 257 LDAISSWWVNLFGHS--NSYINKALKNQLNKL---EHVMLSNLTHKPVIKLSEKLSSLTQY--KLGHCFYGSDGASAVEV 329 (965)
Q Consensus 257 lD~~~~~~~~~lGh~--~p~v~~av~~~~~~~---~~~~~~~~~~~~~~~la~~l~~~~~~--~~~~v~~~~sGseA~~~ 329 (965)
||+..|.+..+-|.. .|.|.+|........ ..|....+..+.++.+++.+.+..+. ..+++..+.+++.+...
T Consensus 29 InL~iG~~~d~~g~~p~~~~V~~A~~~l~~~~~~~~~Y~p~~G~~~lR~aia~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 108 (397)
T d3tata_ 29 VNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGAL 108 (397)
T ss_dssp EECSCCSCCCTTSSCCCCHHHHHHHHHHTTSCCSSBCCCCTTCCHHHHHHHHHHHTCSSCHHHHTTCEEECCBSHHHHHH
T ss_pred EEccCCCCcCCCCCCCCcHHHHHHHHHHHhCcccCCCCCCcccCHHHHHHHHHHHhhccCCcCCcCcEEEecCchhHHHH
Confidence 788777665666654 366777755333221 22444455666777777777655431 35678777777766555
Q ss_pred HHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHH
Q psy8199 330 ALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIF 409 (965)
Q Consensus 330 Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 409 (965)
++.++..... .+++.|++.+++|.++.......++ .+..+|........ .|.+
T Consensus 109 ~l~~~~~~~~----~pgd~Vlv~~P~y~~y~~~~~~~G~-------------~~~~v~~~~~~~~~----------~~~~ 161 (397)
T d3tata_ 109 KVGADFLKRY----FPESGVWVSDPTWENHVAIFAGAGF-------------EVSTYPWYDEATNG----------VRFN 161 (397)
T ss_dssp HHHHHHHHHH----CSSCCCEECSSCCTTHHHHHHTTTC-------------CCEECCCCCTTTSS----------CCHH
T ss_pred HHHHHHhhhc----CCCCcceecccCccccHHHHHHcCC-------------EEEEEecchhhccc----------cchH
Confidence 5544332110 3678899999999988555444433 33344432221111 2455
Q ss_pred HHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCccccc--ccc-cccCCCcce
Q psy8199 410 DLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKF--FAC-EHAEIWPDF 486 (965)
Q Consensus 410 ~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~--~~~-~~~~~~pDi 486 (965)
++.+.+....++..++++.+ .+|++|.+. +.+.+++|.++|++|++++|.||+|.++...+.. ... ...+..+++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~-p~NPTG~~~-s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~ 239 (397)
T d3tata_ 162 DLLATLKTLPARSIVLLHPC-CHNPTGADL-TNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPA 239 (397)
T ss_dssp HHHHHHTTCCSSCCCEECSS-SCSSSCCCC-CHHHHHHHHHHHHHTTCCCEECBSCTTSSSCHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHhhhcccccEEEEecC-CCCCCCeeC-CHHHHHHHHHHHhhcCeeEEeehhhhhhccCCcccchhhhhhhhcCCce
Confidence 66666655455556666665 699999766 8888999999999999999999999988544331 111 112333334
Q ss_pred e---eeccccCCCcccceeeeecHHHHHhhhccC-CcccccccCCCCCCHHHHHHHHHHHHHHh-cccHHHH-------H
Q psy8199 487 L---CLSKGITGGYLPLSLVMTTDKIYNSIYYKN-NINIFLHSHSYSGNPLACCAALATLEIFN-KDNILQR-------I 554 (965)
Q Consensus 487 v---t~sK~l~gG~~pig~v~~~~~i~~~~~~~~-~~~~~~~~~t~~~~~~~~aaa~a~L~~~~-~~~~~~~-------~ 554 (965)
+ ++||.++-.+|++|+++++...++....-. .......+...+.+...++++...+.--. ...+.+. .
T Consensus 240 i~~~s~SK~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (397)
T d3tata_ 240 LVSNSFSKIFSLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLAEVEEMRTRI 319 (397)
T ss_dssp EECBCCHHHHTBTTTCCBCCEEECSSTTHHHHHHHHHHHHTTTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHH
T ss_pred EEEecCcccccccCccccccccchhHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 3 589965542289999988765443322100 00001122333445556665555553111 0112222 2
Q ss_pred HHHHHHHHHHHHcccCCCceee-eeceeEEEEEEEeecCccchhhHHHHHHHHHH-HcCcEEeecCCEEEEeCCcccCHH
Q psy8199 555 SQDMKKITKALTSLITHPKIIN-FRQKGMIWAFDVIIEDPEQIETFSKKFFVAAL-KNELLLRPIGNTVYLMPPYILNKN 632 (965)
Q Consensus 555 ~~~~~~l~~~L~~l~~~~~i~~-v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~~~~lR~~p~~~~t~~ 632 (965)
+++.+.+.+.|....--..+.. ....|+|.++.+. . ++.++|+ +.||++.|++ ||+.+ .++++
T Consensus 320 ~~~r~~l~~~L~~~~~~~~~~~~~~~~G~F~~~~ls-------~----e~~~~L~~e~~V~l~~g~---Ri~~a-~~~~~ 384 (397)
T d3tata_ 320 LAMRQELVKVLSTEMPERNFDYLLNQRGMFSYTGLS-------A----AQVDRLREEFGVYLIASG---RMCVA-GLNTA 384 (397)
T ss_dssp HHHHHHHHHTTTTTCTTSCTTHHHHCCSSBCCCCCC-------H----HHHHHHTTTTCEECCSSS---CCBTT-SCCTT
T ss_pred HHHHHHHHHHHHHhCCCCceEEEcCCCceEEecCcC-------H----HHHHHHHHhCCEEeCCCC---EEEec-cCCHH
Confidence 2223333333322210001222 2344555444331 1 2344554 6799988864 78743 46778
Q ss_pred HHHHHHHhhhcc
Q psy8199 633 EIQHMTSAIFQT 644 (965)
Q Consensus 633 ~i~~~~~~l~~~ 644 (965)
+|+.+.+++.++
T Consensus 385 ~i~~~~~ai~~v 396 (397)
T d3tata_ 385 NVQRVAKAFAAV 396 (397)
T ss_dssp THHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 899888887653
|
| >d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SelA-like domain: Hypothetical protein MJ0158 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.54 E-value=1.8e-14 Score=157.99 Aligned_cols=210 Identities=14% Similarity=0.042 Sum_probs=129.5
Q ss_pred CHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCC-CCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEE
Q psy8199 272 NSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQY-KLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFI 350 (965)
Q Consensus 272 ~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~-~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi 350 (965)
++.+.++..+.++... ++.....++.+...+.++. ..+.++.++||++|+.+++... .+++.++
T Consensus 31 ~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~a~~~~l~al---------~~~~~vi 95 (366)
T d2aeua1 31 GFLIDEKDKALLNTYI------GSSYFAEKVNEYGLKHLGGDENDKCVGFNRTSSAILATILAL---------KPKKVIH 95 (366)
T ss_dssp CCCCCHHHHHHHTSTT------HHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHH---------CCSEEEE
T ss_pred CCCccHHHHHHHHHhc------CchhhHHHHHHHHHHHccCCCccEEEEeCCHHHHHHHHHHHh---------CCCCEEE
Confidence 3445555555554421 1122334555555555542 3467899999999999998754 2556665
Q ss_pred EE-cCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEcc
Q psy8199 351 CL-QNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEP 429 (965)
Q Consensus 351 ~~-~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep 429 (965)
+. +...|.+...+..+.+ ..++.. +|+++|++++. +++++|+++.
T Consensus 96 ~~~~~~~~~~~~~~~~l~g--------------~~~v~~-----------------~d~e~l~~~i~---~~tk~i~~~~ 141 (366)
T d2aeua1 96 YLPELPGHPSIERSCKIVN--------------AKYFES-----------------DKVGEILNKID---KDTLVIITGS 141 (366)
T ss_dssp ECSSSSCCTHHHHHHHHTT--------------CEEEEE-----------------SCHHHHHTTCC---TTEEEEEECB
T ss_pred EecCCCcchhHHHHHHhcC--------------CeEECC-----------------CCHHHHHHhcC---CCceEEEEEe
Confidence 54 3334554333333222 122221 36778877664 5678888876
Q ss_pred ccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccc--cccccCCCcceeee--ccccCCCcccceeeee
Q psy8199 430 LVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFF--ACEHAEIWPDFLCL--SKGITGGYLPLSLVMT 505 (965)
Q Consensus 430 ~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~--~~~~~~~~pDivt~--sK~l~gG~~pig~v~~ 505 (965)
+.|+.+ .+.+-|++|.++|++||+++|+||+|... ..+... ....+| .|++++ +|+++| +++|++++
T Consensus 142 -p~n~~~---~~~~~l~~i~~ia~~~~~~~i~De~y~~~-~~~~~~~~~~~~~~--~di~~~S~sK~~~g--~~~G~i~~ 212 (366)
T d2aeua1 142 -TMDLKV---IELENFKKVINTAKNKEAIVFVDDASGAR-VRLLFNQPPALKLG--ADLVVTSTDKLMEG--PRGGLLAG 212 (366)
T ss_dssp -CTTSCB---CCHHHHHHHHHHHHHHTCCEEEECTTHHH-HHHHTTCCCHHHHT--CSEEEEETTSSSSS--CSCEEEEE
T ss_pred -cCCCCc---CCHHHHHHHHHHhccCcEEEEEecCcccc-ccccccCCCHhhcC--ceEEEecccccccc--cceeEEEe
Confidence 455432 23445999999999999999999998621 111110 111223 577754 566665 79999999
Q ss_pred cHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHH
Q psy8199 506 TDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIF 545 (965)
Q Consensus 506 ~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~ 545 (965)
++++++.+.. .....+++.+|..+.++.++|+.+
T Consensus 213 ~~~~i~~~~~------~~~~~g~~~~~~~~~a~~~aL~tl 246 (366)
T d2aeua1 213 KKELVDKIYI------EGTKFGLEAQPPLLAGIYRALKNF 246 (366)
T ss_dssp EHHHHHHHHH------HHHTTTCBCCHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHH------HHhcccccCCHHHHHHHHHHHHhc
Confidence 9999998865 223345567888888888888754
|
| >d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 2-aminoethylphosphonate transaminase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.50 E-value=2.7e-13 Score=148.82 Aligned_cols=302 Identities=16% Similarity=0.161 Sum_probs=176.7
Q ss_pred cHHHHHHHHHHHhhcCCCCCe--EEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCcc
Q psy8199 296 HKPVIKLSEKLSSLTQYKLGH--CFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFK 373 (965)
Q Consensus 296 ~~~~~~la~~l~~~~~~~~~~--v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~ 373 (965)
.+..++..++++++++...++ ++|+.|||+|++.++..... +++++++....+++.........
T Consensus 32 ~~~~~~~r~~l~~l~~~~~~~~~i~~t~s~T~~~~~~~~~l~~--------~~~~~~~~~~~~~~~~~~~~~~~------ 97 (361)
T d1m32a_ 32 IGVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGSALG--------PQDKVLIVSNGAYGARMVEMAGL------ 97 (361)
T ss_dssp TTTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHHSCC--------TTCCEEEEESSHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHhCCCCCCEEEEECCCHHHHHHHHHHHhhh--------hccccceeeehhhhhhHHHHhhh------
Confidence 345678888899998765554 77889999999998875532 34455555555444322111100
Q ss_pred chhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHH
Q psy8199 374 EIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICN 453 (965)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~ 453 (965)
..........+...... .+.+.+.... ..++..+.+.. +.+.+|.+.| +++|.++|+
T Consensus 98 -----~~~~~~~~~~~~~~~~~----------~~~~~~~~~~---~~~~~~v~~~~-~~~~tG~~~~----i~~i~~~~~ 154 (361)
T d1m32a_ 98 -----MGIAHHAYDCGEVARPD----------VQAIDAILNA---DPTISHIAMVH-SETTTGMLNP----IDEVGALAH 154 (361)
T ss_dssp -----HTCCEEEEECCTTSCCC----------HHHHHHHHHH---CTTCCEEEEES-EETTTTEECC----HHHHHHHHH
T ss_pred -----hhcccccccccccCCcc----------chhhHHHHHh---ccCccceEEEe-eecccccchh----hhhhhhhhc
Confidence 01112222222111111 1222222222 34566666666 7888999998 999999999
Q ss_pred hcCCeEEEeccccCCCcccccccccccCCCcceeeec--cccCCCcccceeeeecHHHHHhhhccCCcc-----------
Q psy8199 454 NYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS--KGITGGYLPLSLVMTTDKIYNSIYYKNNIN----------- 520 (965)
Q Consensus 454 ~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~s--K~l~gG~~pig~v~~~~~i~~~~~~~~~~~----------- 520 (965)
+||+++++|-+|+ +|.. .++......|++++| |.++|. ..+|.+..+++..+.........
T Consensus 155 ~~g~~~~vDa~qs-~G~~----~~d~~~~~~D~~~~s~~K~l~gp-~G~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (361)
T d1m32a_ 155 RYGKTYIVDAMSS-FGGI----PMDIAALHIDYLISSANKCIQGV-PGFAFVIAREQKLAACKGHSRSLSLDLYAQWRCM 228 (361)
T ss_dssp HHTCEEEEECTTT-TTTS----CCCTTTTTCSEEEEESSSTTCCC-SSEEEEEEEHHHHTTCTTCCSCSTTCHHHHHHHH
T ss_pred ccceeeEeecccc-cCcc----cccccccccceEEeeecccccCC-CCceEEEechhhhhhhccccccccccchhhhccc
Confidence 9999999999997 5432 233334457999887 677664 36788888988776544311000
Q ss_pred -cccccCCCCCCHHHHHHHHHHHHHHhcccHH----HHHHHHHHHHHHHHHccc-CCCceeeeeceeEEEEEEEeecCcc
Q psy8199 521 -IFLHSHSYSGNPLACCAALATLEIFNKDNIL----QRISQDMKKITKALTSLI-THPKIINFRQKGMIWAFDVIIEDPE 594 (965)
Q Consensus 521 -~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~----~~~~~~~~~l~~~L~~l~-~~~~i~~v~g~G~~~~i~~~~~~~~ 594 (965)
.......++.+..++.+...+++.+.++... .+.....+.+.+.++... ....-...++.+ +..+.+. .+.
T Consensus 229 ~~~~~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~rs~~-v~~~~~p-~~~- 305 (361)
T d1m32a_ 229 EDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRALGFNTLLDDELHSPI-ITAFYSP-EDP- 305 (361)
T ss_dssp HHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCCBSSCGGGBCSS-EEEEECC-CCT-
T ss_pred cccccccCCCCCchhhhHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHhhcCCcccCChhhcCCc-EEEEECC-CCC-
Confidence 0011122345666777777777765544333 334444555555555441 111111223333 3445443 111
Q ss_pred chhhHHHHHHHHHHHcCcEEeec----CCEEEEeCCcccCHHHHHHHHHhhhccc
Q psy8199 595 QIETFSKKFFVAALKNELLLRPI----GNTVYLMPPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 595 ~~~~~~~~~~~~l~~~Gi~~~~~----~~~lR~~p~~~~t~~~i~~~~~~l~~~~ 645 (965)
......+.+.|.++|+.+.++ ++.+|++.--..++++++++++++++++
T Consensus 306 --~~~~~~~~~~l~~~gi~i~~G~~~~~~~~Ris~~g~~~~~di~~lv~al~~~L 358 (361)
T d1m32a_ 306 --QYRFSEFYRRLKEQGFVIYPGKVSQSDCFRIGNIGEVYAADITALLTAIRTAM 358 (361)
T ss_dssp --TCCHHHHHHHHHHTTEECEECCCSSSCEEEEECCSSCCHHHHHHHHHHHHHHC
T ss_pred --CCCHHHHHHHHHHCCcEEECCCcCCCCEEEEeCCCCCCHHHHHHHHHHHHHHc
Confidence 111346788999999998764 3689998432578999999999988654
|
| >d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Thermotoga maritima [TaxId: 2336]
Probab=99.50 E-value=4.5e-13 Score=147.81 Aligned_cols=334 Identities=11% Similarity=0.053 Sum_probs=192.3
Q ss_pred cccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCC-------CcHHHHHHHHHHHhhcCCCCCeEEEcCChhHH
Q psy8199 254 KRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNL-------THKPVIKLSEKLSSLTQYKLGHCFYGSDGASA 326 (965)
Q Consensus 254 ~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~-------~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA 326 (965)
|-|||..++ +..++.|++|+.+.+.+.. . ++.. ..+..++..++++++++.+.++|+|++|+|++
T Consensus 2 ~iyld~a~~------~~~p~~v~ea~~~~~~~~~-~-np~~~~~~~~~~~~~~~~aR~~ia~l~~~~~~~i~~~~~~T~~ 73 (376)
T d1eg5a_ 2 RVYFDNNAT------TRVDDRVLEEMIVFYREKY-G-NPNSAHGMGIEANLHMEKAREKVAKVLGVSPSEIFFTSCATES 73 (376)
T ss_dssp CEECBTTTC------CCCCHHHHHHHHHHHHTCC-C-CTTCSSHHHHHHHHHHHHHHHHHHHHHTSCGGGEEEESCHHHH
T ss_pred EEEEECccc------ccCCHHHHHHHHHHHHHcC-C-CCccccHHHHHHHHHHHHHHHHHHHHcCCCCCcEEEECCHHHH
Confidence 468998664 3368999999998887631 1 1111 12223455678899998888899999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHH
Q psy8199 327 VEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARC 406 (965)
Q Consensus 327 ~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (965)
+..++....... ..+++.+++. ..+|+......... ......+..+|..... . .
T Consensus 74 l~~~~~~~~~~~----~~~g~~v~~~-~~~~~~~~~~~~~~---------~~~g~~v~~vp~~~~~-~-----------i 127 (376)
T d1eg5a_ 74 INWILKTVAETF----EKRKRTIITT-PIEHKAVLETMKYL---------SMKGFKVKYVPVDSRG-V-----------V 127 (376)
T ss_dssp HHHHHHHHHHHT----TTTCCEEEEC-TTSCHHHHHHHHHH---------HHTTCEEEECCBCTTS-C-----------B
T ss_pred HHhhhhcccccc----cccCcccccc-cccchhhHHHHHHH---------HhcCCEEEEEcCCCCC-e-----------E
Confidence 999887543221 1234444444 44444422211111 1111234555543211 1 3
Q ss_pred HHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhc--CCeEEEeccccCCCcccccccccccCCCc
Q psy8199 407 AIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNY--NIHLIADEIAVGCGRTGKFFACEHAEIWP 484 (965)
Q Consensus 407 d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~--g~llI~DEv~tg~gr~G~~~~~~~~~~~p 484 (965)
|++++++++. ++++.|++.- +++.+|.+.+ ++.+.++|+.+ |+++++|.+|. +|.. ..+.....+
T Consensus 128 d~~~l~~~i~---~~t~lv~is~-v~~~tG~~~~----~~~i~~~~~~~~~~~~~~vD~~q~-~g~~----~~d~~~~~~ 194 (376)
T d1eg5a_ 128 KLEELEKLVD---EDTFLVSIMA-ANNEVGTIQP----VEDVTRIVKKKNKETLVHVDAVQT-IGKI----PFSLEKLEV 194 (376)
T ss_dssp CHHHHHHHCC---TTEEEEEEES-BCTTTCBBCC----HHHHHHHHHHHCTTCEEEEECTTT-TTTS----CCCCTTTCC
T ss_pred CHHHHHHhcC---CCceEEEEEC-Cccccceeee----ehhhhhhhhhcccCceeEEEeeec-cccc----cccccccCc
Confidence 6788888874 5788888888 8999999988 88888888655 89999999985 5432 233334457
Q ss_pred ceeee--ccccCCCcccceeeeecHHHH-HhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhc--ccHHHHHHHHHH
Q psy8199 485 DFLCL--SKGITGGYLPLSLVMTTDKIY-NSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK--DNILQRISQDMK 559 (965)
Q Consensus 485 Divt~--sK~l~gG~~pig~v~~~~~i~-~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~--~~~~~~~~~~~~ 559 (965)
|++++ .|.++ + ...|++..+++.. .....++... ........+..+...+.+..+.... ............
T Consensus 195 D~~~~s~~K~~g-p-~G~~~l~~~~~~~~~p~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (376)
T d1eg5a_ 195 DYASFSAHKFHG-P-KGVGITYIRKGVPIRPLIHGGGQE--RGLRSGTQNVPGIVGAARAMEIAVEELSEAAKHMEKLRS 270 (376)
T ss_dssp SEEEEEGGGGTS-C-TTCEEEEECTTSCCCCSBCSSCTT--TTTBCSCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred cceecccceeec-C-CCceeEEeccCcccCCcccCCCCc--ccccCCcccchhhhhHHHHhhccccchhhhhhhhhhhhh
Confidence 88765 58653 2 3456666655421 1111111000 0111112344554444444443322 234455556666
Q ss_pred HHHHHHHcccCCCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec----------------------
Q psy8199 560 KITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI---------------------- 617 (965)
Q Consensus 560 ~l~~~L~~l~~~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~---------------------- 617 (965)
++.++|......-.............+.+. + .....+...|.++||.++.+
T Consensus 271 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~-----~~~~~~~~~L~~~gI~vr~G~~c~~~~~~~~~~l~~~gi~~~ 343 (376)
T d1eg5a_ 271 KLVSGLMNLGAHIITPLEISLPNTLSVSFP--N-----IRGSTLQNLLSGYGIYVSTSSACTSKDERLRHVLDAMGVDRR 343 (376)
T ss_dssp HHHHHHHTTTCEECSCTTSBCTTEEEEECT--T-----CCHHHHHHHHHHTTEECBC------------CHHHHTTCCHH
T ss_pred hhccccccccccccccccccccceeeeccC--C-----CCHHHHHHHHhhCCeEEeCcchhcCCccchhHHHHHcCCCcc
Confidence 777777654211000011111122223222 1 11345666777889877532
Q ss_pred --CCEEEEeCCcccCHHHHHHHHHhhhccc
Q psy8199 618 --GNTVYLMPPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 618 --~~~lR~~p~~~~t~~~i~~~~~~l~~~~ 645 (965)
++.+|++|+...|.+|++.+++.+.+.+
T Consensus 344 ~~~~~iRiS~~~ynt~edid~l~~~L~~iv 373 (376)
T d1eg5a_ 344 IAQGAIRISLCKYNTEEEVDYFLKKIEEIL 373 (376)
T ss_dssp HHHHEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEecCCCCCHHHHHHHHHHHHHHH
Confidence 1469999999999999999999887643
|
| >d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=3.8e-13 Score=149.14 Aligned_cols=320 Identities=14% Similarity=0.100 Sum_probs=188.1
Q ss_pred CHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCC-eEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEE
Q psy8199 272 NSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLG-HCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFI 350 (965)
Q Consensus 272 ~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~-~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi 350 (965)
+|+|.+|+... ...+.+....+...+..+.|+++++..-+ .++|+.|||+|++.++.... .++++++
T Consensus 31 ~~~Vl~am~~~----~i~HRs~~f~~i~~ea~~~l~~llg~~~~~~ii~~gsgT~a~~~~i~~l~--------~~~~~~~ 98 (388)
T d1h0ca_ 31 PPRIMAAGGLQ----MIGSMSKDMYQIMDEIKEGIQYVFQTRNPLTLVISGSGHCALEAALVNVL--------EPGDSFL 98 (388)
T ss_dssp CHHHHHHHTCC----CCCTTSHHHHHHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHHHHHHC--------CSSCCEE
T ss_pred CHHHHHHhCcC----CCCCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHHhh--------ccCCcee
Confidence 67777766321 11122222344567788889999875433 68899999999999998664 3667788
Q ss_pred EEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccc
Q psy8199 351 CLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPL 430 (965)
Q Consensus 351 ~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~ 430 (965)
+...++++........ ........+..+.... .|.+.+++.+..... ..+.+.-
T Consensus 99 ~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~--~~v~~~~- 152 (388)
T d1h0ca_ 99 VGANGIWGQRAVDIGE-----------RIGARVHPMTKDPGGH------------YTLQEVEEGLAQHKP--VLLFLTH- 152 (388)
T ss_dssp ECBSSHHHHHHHHHHH-----------HHC--CBCCBCCTTCC------------CCHHHHHHHHHHHCC--SEEEEES-
T ss_pred eecccceeeeeccccc-----------cccccccccccCCccc------------cchHHHHHHhccCCc--ceEEEee-
Confidence 7776665542211110 0111111222221111 134555555544333 3333444
Q ss_pred cccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcceeeec--cccCCCcccceeeeecHH
Q psy8199 431 VQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS--KGITGGYLPLSLVMTTDK 508 (965)
Q Consensus 431 v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~s--K~l~gG~~pig~v~~~~~ 508 (965)
+.+.+|.+.| +++|.++|++||+++++|.+|+ +|.. .........|++++| |.++|. ..+|.++.+++
T Consensus 153 ~~n~tG~i~p----i~~i~~~~~~~g~~~~vD~~qs-~g~~----~~d~~~~~~D~~~~s~~K~~~gp-~g~~~~~~~~~ 222 (388)
T d1h0ca_ 153 GESSTGVLQP----LDGFGELCHRYKCLLLVDSVAS-LGGT----PLYMDRQGIDILYSGSQKALNAP-PGTSLISFSDK 222 (388)
T ss_dssp EETTTTEECC----CTTHHHHHHTTTCEEEEECTTT-TTTS----CCCTTTTTCSEEEEESSSTTCCC-TTCEEEEECHH
T ss_pred eeeccccccC----HHHHHHHhhcccccceeccccc-cccc----cccccccccceecccccccccCC-CceEEEeecHH
Confidence 5788999998 8889999999999999999997 5422 233334456888876 666653 35567777877
Q ss_pred HHHhhhccCC-ccc----------------ccccCCCCCCHHHHHHHHHHHHHHhcc---cHHHHHHHHHHHHHHHHHcc
Q psy8199 509 IYNSIYYKNN-INI----------------FLHSHSYSGNPLACCAALATLEIFNKD---NILQRISQDMKKITKALTSL 568 (965)
Q Consensus 509 i~~~~~~~~~-~~~----------------~~~~~t~~~~~~~~aaa~a~L~~~~~~---~~~~~~~~~~~~l~~~L~~l 568 (965)
..+.+..... ... .......+.+..+..+..++++.+.+. ...++..++.+++++.+..+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~al~~~~~~g~~~~~~~~~~l~~~l~~~~~~~ 302 (388)
T d1h0ca_ 223 AKKKMYSRKTKPFSFYLDIKWLANFWGCDDQPRMYHHTIPVISLYSLRESLALIAEQGLENSWRQHREAAAYLHGRLQAL 302 (388)
T ss_dssp HHHHHTTCSSCCSCSTTCHHHHHHHTTCSSSCCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhccccccccccccchhhhhhhhccccccccccccHHHHHHHHHHHHHHHHhccccccccccchhHHHHHHHhhc
Confidence 7665533110 000 000111224555677777888776543 34556666777777777665
Q ss_pred cCCCcee--eeeceeEEEEEEEeecCccchhhHHHHHHHHHHH-cCcEEeec-----CCEEEEe-CCcccCHHHHHHHHH
Q psy8199 569 ITHPKII--NFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALK-NELLLRPI-----GNTVYLM-PPYILNKNEIQHMTS 639 (965)
Q Consensus 569 ~~~~~i~--~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~-~Gi~~~~~-----~~~lR~~-p~~~~t~~~i~~~~~ 639 (965)
.....+. ..+.. .+..+.+. ++. ....+...|.+ .||.++.+ ++.+|++ ..+..+.++++.+++
T Consensus 303 g~~~~~~~~~~rs~-~i~~~~~p--~~~----~~~~~~~~L~~~~gI~v~~G~~~~~~~~iRis~~g~~~t~edid~li~ 375 (388)
T d1h0ca_ 303 GLQLFVKDPALRLP-TVTTVAVP--AGY----DWRDIVSYVIDHFDIEIMGGLGPSTGKVLRIGLLGCNATRENVDRVTE 375 (388)
T ss_dssp TCCBSSCSGGGBCT-TEEEEECC--TTC----CHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHH
T ss_pred CcccccCCHHHcCC-eEEEEECC--CCC----CHHHHHHHHHhcCCEEEeCCchhhcCCEEEEeCCCCCCCHHHHHHHHH
Confidence 2221121 12222 24455553 211 13356666654 59988753 3689999 667889999999999
Q ss_pred hhhcccc
Q psy8199 640 AIFQTFN 646 (965)
Q Consensus 640 ~l~~~~~ 646 (965)
++++++.
T Consensus 376 aL~~~L~ 382 (388)
T d1h0ca_ 376 ALRAALQ 382 (388)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9887654
|
| >d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Alliinase species: Garlic (Allium sativum) [TaxId: 4682]
Probab=99.47 E-value=9.7e-14 Score=153.48 Aligned_cols=279 Identities=9% Similarity=0.000 Sum_probs=166.2
Q ss_pred HHHHHHHHhh---cCC---CCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCcc
Q psy8199 300 IKLSEKLSSL---TQY---KLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFK 373 (965)
Q Consensus 300 ~~la~~l~~~---~~~---~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~ 373 (965)
.+|.+.++++ .+. +..+|++++|++|++.+++.+.........-.++++||+..|.|..+...+....+.
T Consensus 103 ~~L~~~i~~lh~~~gna~t~~~~IvvG~Gsteli~~~~~AL~~~~~~~~~~pg~~Vv~~~P~y~~Y~~~~~~~~~~---- 178 (425)
T d2hoxa1 103 FELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFDKK---- 178 (425)
T ss_dssp HHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHHHSCBT----
T ss_pred HHHHHHHHHHHhhhCCCCCCCCEEEECCCHHHHHHHHHHHhccccccccCCCCCEEEEecCccccHHHHHHHcCCC----
Confidence 3455555544 331 234799999999999999987632100000125689999999998875433322221
Q ss_pred chhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHH
Q psy8199 374 EIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICN 453 (965)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~ 453 (965)
...+. .|.+.++++++ ++....++++| +|++|.+.. +.
T Consensus 179 --------~~~~~-------------------~D~~~~~~~~~--~~~~ii~l~sP--nNPtG~l~~-----------~v 216 (425)
T d2hoxa1 179 --------GYVWA-------------------GNAANYVNVSN--PEQYIEMVTSP--NNPEGLLRH-----------AV 216 (425)
T ss_dssp --------TEEEE-------------------EEGGGGTTCSC--GGGEEEEEESS--CTTTCCCCC-----------CS
T ss_pred --------CCccC-------------------CCHHHHHhhCC--CCceEEEEECC--CCCCcchhh-----------hh
Confidence 11111 13344444332 22334566666 999997632 34
Q ss_pred hcCCeEEEeccccCCCcccccccccccCC-Cccee--eeccccCCCcccceeeeec-HHHHHhhhccCCcccccccCCCC
Q psy8199 454 NYNIHLIADEIAVGCGRTGKFFACEHAEI-WPDFL--CLSKGITGGYLPLSLVMTT-DKIYNSIYYKNNINIFLHSHSYS 529 (965)
Q Consensus 454 ~~g~llI~DEv~tg~gr~G~~~~~~~~~~-~pDiv--t~sK~l~gG~~pig~v~~~-~~i~~~~~~~~~~~~~~~~~t~~ 529 (965)
.+++.+|.||+|-+...+ .. ... ..+++ +|||.++-.+|++|+++++ +.+++.+.. +....+++
T Consensus 217 ~~~~~~I~DEaY~~~~f~----~~--~~~~~~~Ivl~S~SK~fglaGlRiGw~i~~~~~i~~~~~~------~~~~~~~~ 284 (425)
T d2hoxa1 217 IKGCKSIYDMVYYWPHYT----PI--KYKADEDILLFTMSKFTGHSGSRFGWALIKDESVYNNLLN------YMTKNTEG 284 (425)
T ss_dssp STTCEEEEECTTCSTTTS----CC--CSCBCCSEEEEEHHHHTSCGGGCCEEEEECCHHHHHHHHH------HHHHHTSS
T ss_pred hhCCEEEEeccccCcccc----ch--hhhcCCeEEEEeCHHhccCcchheeeEEeCCHHHHHHHHH------hhccCccc
Confidence 568999999999532111 11 111 23343 6899666322999987664 667666654 33446778
Q ss_pred CCHHHHHHHHHHHHHHhc---------cc----HHHHHHHHHHHHHHHHHcccC-----CCc--e-----eeeeceeEEE
Q psy8199 530 GNPLACCAALATLEIFNK---------DN----ILQRISQDMKKITKALTSLIT-----HPK--I-----INFRQKGMIW 584 (965)
Q Consensus 530 ~~~~~~aaa~a~L~~~~~---------~~----~~~~~~~~~~~l~~~L~~l~~-----~~~--i-----~~v~g~G~~~ 584 (965)
.+.+++.+++++|+.... .+ ..+.++++.+++.+.|.+... .|. . ....+.+.+.
T Consensus 285 vs~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~~~~~l~~~p~~~~~~f~~~~~~~~~~f~ 364 (425)
T d2hoxa1 285 TPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYA 364 (425)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEE
T ss_pred CCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeeccCCccceeeeeeccCCCccee
Confidence 889999999999875311 12 245556666667777665421 111 0 1234445555
Q ss_pred EEEEeecCccchhhHHHHHHHHHHHcCcEEeec------CCEEEEeCCcccCHHHHHHHHHhhhccc
Q psy8199 585 AFDVIIEDPEQIETFSKKFFVAALKNELLLRPI------GNTVYLMPPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 585 ~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~------~~~lR~~p~~~~t~~~i~~~~~~l~~~~ 645 (965)
.+.+. .+ ... ...+.|.++||+++|+ ++++|++ +..+++.++++++++.+.+
T Consensus 365 wl~~~-~~---~~~---~~~~lL~e~gI~v~pGs~FG~~~~yvRis--l~~~~e~ld~~l~rL~~~v 422 (425)
T d2hoxa1 365 WVKCE-WE---EDK---DCYQTFQNGRINTQNGVGFEASSRYVRLS--LIKTQDDFDQLMYYLKDMV 422 (425)
T ss_dssp EEEEC-SG---GGC---SHHHHHHHTTEECEEGGGGTSCTTEEEEE--CSSCHHHHHHHHHHHHHHH
T ss_pred eeeCC-CC---hHH---HHHHHHHhCCEEEEechhcCCCCCEEEEE--ecCCHHHHHHHHHHHHHHH
Confidence 55543 11 111 2345678999999974 2699999 7889999999999987654
|
| >d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.45 E-value=8.9e-13 Score=148.34 Aligned_cols=292 Identities=12% Similarity=0.061 Sum_probs=169.1
Q ss_pred HHHHHHhhcCCCCCeEEEc-CChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccC
Q psy8199 302 LSEKLSSLTQYKLGHCFYG-SDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLL 380 (965)
Q Consensus 302 la~~l~~~~~~~~~~v~~~-~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~ 380 (965)
+...+++.++. .....++ .|+++++.+++.+.+.. .+++.||+. ..-|.+..-++...+..
T Consensus 118 ~~~~~~~~~g~-~~~~~~~~~~t~~~~~~~l~a~r~~------~~~~~vi~s-~~~H~s~~k~~~~~g~~---------- 179 (434)
T d2z67a1 118 ILESFFKQLGL-NVHAIATPISTGMSISLCLSAARKK------YGSNVVIYP-YASHKSPIKAVSFVGMN---------- 179 (434)
T ss_dssp HHHHHHHHTTC-CCEEEEESSCHHHHHHHHHHHHHHH------HCCCEEEEE-CCCCHHHHHHHHHTTCE----------
T ss_pred HHHHHHHhcCC-CcceeecCcHHHHHHHHHHHHHHHh------hcCceEEEe-ccCCHHHHHHHHHhCCc----------
Confidence 44446666753 3344444 44555555666655544 245555554 45576655444443311
Q ss_pred CCeeEecC-CCCCCCCCCCChhHHHHHHHHHHHHHHHhC--CCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCC
Q psy8199 381 NKTYIITT-PDSRNINKGNSANEIARCAIFDLEILLKKN--HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNI 457 (965)
Q Consensus 381 ~~~~~~~~-~~~~~~~~~~~~~~~~~~d~~~le~~l~~~--~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~ 457 (965)
...++. +..... ..|+++|+++|+++ .+.+++|++.. +++.+|.+.+ +++|.++|++||+
T Consensus 180 --~~~v~~~~~~~~~----------~~d~~~l~~~i~~~~~~~~~~~v~~~~-~~~~~g~~~~----l~~i~~~~~~~~~ 242 (434)
T d2z67a1 180 --MRLVETVLDGDRV----------YVPVEDIENAIKKEIELGNRPCVLSTL-TFFPPRNSDD----IVEIAKICENYDI 242 (434)
T ss_dssp --EEEECCEEETTEE----------ECCHHHHHHHHHHHHHTTCCEEEEEES-SCCTTBCCCC----HHHHHHHHHHHTC
T ss_pred --ceEEEeecCCCcc----------CCCHHHHHHHHHhhhhcCCceEEEecc-CcCCCccccC----HHHHHHHHHHhCC
Confidence 112211 111000 13789999999764 34677888877 6777888776 9999999999999
Q ss_pred eEEEeccccCCCcccccccccccCCCcceeeec--cccCCCcccceeeeec-HHHHHhhhccCCcccccccCCCCCCHHH
Q psy8199 458 HLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS--KGITGGYLPLSLVMTT-DKIYNSIYYKNNINIFLHSHSYSGNPLA 534 (965)
Q Consensus 458 llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~s--K~l~gG~~pig~v~~~-~~i~~~~~~~~~~~~~~~~~t~~~~~~~ 534 (965)
++|+|+++.++......+.........|+++++ |.++++ ...|++..+ +.+.+.+.. ...+.+...+...
T Consensus 243 ~l~vD~a~g~~~~~~~~~~~~~~~~~~D~~~~s~hK~l~~~-~g~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~ 315 (434)
T d2z67a1 243 PHIINGAYAIQNNYYLEKLKKAFKYRVDAVVSSSDKNLLTP-IGGGLVYSTDAEFIKEISL------SYPGRASATPVVN 315 (434)
T ss_dssp CEEEECTTTTTCHHHHHHHHHHHTSCCSEEEEEHHHHHCCC-SSCEEEEESCHHHHHHHHT------TSCSCBCSHHHHH
T ss_pred eEEEeccchhhhhhccccccccccCCcceEEEcCccccccC-CCccccccCcHHHHHHHHh------hcccccccchHHH
Confidence 999999996432111111111223457888875 877664 355556554 556665544 1223333333334
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcccCCCceeeeece-eEEEEEEEeecCccchhhHHHHHHHHHHHcCcE
Q psy8199 535 CCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQK-GMIWAFDVIIEDPEQIETFSKKFFVAALKNELL 613 (965)
Q Consensus 535 ~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~-G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~ 613 (965)
+.+++..+......+..++..++.+++.++|+++....+....... ...+.+.+. .+ ..++...|.++||.
T Consensus 316 ~~a~l~~~~~~g~~~~~~~~~~~a~~l~~~L~~l~~~~g~~ll~~~~~~~~~~~~~-~~-------~~~l~~~L~~~gI~ 387 (434)
T d2z67a1 316 TLVSLLSMGSKNYLELVKNQKNSKKLLDELLNDLSKKTGGKFLDVESPIASCISVN-SD-------PVEIAAKLYNLRVT 387 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCBCCCCCSSEEEEECS-SC-------HHHHHHHHHHTTEE
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhhhhcCceecCCCCCceeeeecC-CC-------HHHHHHHHHHcCCe
Confidence 4444444433333456777788889999988877322222111111 112222221 11 33577788899985
Q ss_pred Eee----------------cCCEEEEeCCcccCHHHHHHHHHhhhc
Q psy8199 614 LRP----------------IGNTVYLMPPYILNKNEIQHMTSAIFQ 643 (965)
Q Consensus 614 ~~~----------------~~~~lR~~p~~~~t~~~i~~~~~~l~~ 643 (965)
... ..+.+|++.+...|+++||.+++++++
T Consensus 388 g~~v~~~l~~~g~~~~~~~~~~~l~~~~s~~~T~edID~~i~~L~k 433 (434)
T d2z67a1 388 GPRGIKKTDHFGNCYLGTYTHDYIVMNAAIGVRTEDIVNSVSKLEK 433 (434)
T ss_dssp SCEEECTTCHHHHTCSSCCSCCEEEEECCTTCCHHHHHHHHHHHHT
T ss_pred eeehhhhccccCeeeecccCCCeEEEecCCCCCHHHHHHHHHHHhc
Confidence 431 126799999999999999999999875
|
| >d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.38 E-value=4.6e-12 Score=142.94 Aligned_cols=309 Identities=9% Similarity=0.062 Sum_probs=177.6
Q ss_pred HHHHHHHHHhhcCCC-CCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhc
Q psy8199 299 VIKLSEKLSSLTQYK-LGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYT 377 (965)
Q Consensus 299 ~~~la~~l~~~~~~~-~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~ 377 (965)
..++.+.++++++.. ....+++++||++...++.+++..+ + ++++.||+ ...-|.+...++...|..
T Consensus 96 e~~~~~~~~~l~g~~~~~~~~~~~~~t~~~~~~~l~a~~~~---~-~~~~~vi~-~~~~H~s~~~a~~~~g~~------- 163 (445)
T d3bc8a1 96 TNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHK---R-PKAKYIIW-PRIDQKSCFKSMVTAGFE------- 163 (445)
T ss_dssp HHHHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHH---C-TTCCEEEE-ECCCCHHHHHHHHHTTCE-------
T ss_pred HHHHHHHHHHHhCCCcccCccccccchHHHHHHHHHHHHHh---C-CCCCEEEE-cCcccHHHHHHHHHcCCe-------
Confidence 345667778877633 3578889999987776666554432 1 34455555 445587766655555421
Q ss_pred ccCCCeeEecC-CC-CCCCCCCCChhHHHHHHHHHHHHHHHhC-CCcEEEEEEccccccCCCcccCChHHHHHHHHHHHh
Q psy8199 378 SLLNKTYIITT-PD-SRNINKGNSANEIARCAIFDLEILLKKN-HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNN 454 (965)
Q Consensus 378 ~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~d~~~le~~l~~~-~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~ 454 (965)
...+.. +. ..+. .|+++|+++|++. .+.+++|++.. +.+.+|.+.+ +++|.++|++
T Consensus 164 -----~~~v~~~~~~~~~~-----------id~~~l~~~i~~~~~~~~~~v~~~~-~~~~~G~~~~----~~~i~~~~~~ 222 (445)
T d3bc8a1 164 -----PVVIENVLEGDELR-----------TDLKAVEAKIQELGPEHILCLHSTT-ACFAPRVPDR----LEELAVICAN 222 (445)
T ss_dssp -----EEEECCEEETTEEE-----------CCHHHHHHHHHHHCGGGEEEEEEES-SCCTTBCCCC----HHHHHHHHHH
T ss_pred -----eEEEEeeccCcccc-----------cCHHHHHHHHHhccccCeEEEEEeC-CCCCCeeehh----HHHHHHHHHH
Confidence 112211 11 0111 3789999999764 34588888887 6788898877 9999999999
Q ss_pred cCCeEEEeccccCCCcc-cc--cccccccCCCcceeeec--cccCCCcccceeeeec-HHHHHhhhccCCcccccccCCC
Q psy8199 455 YNIHLIADEIAVGCGRT-GK--FFACEHAEIWPDFLCLS--KGITGGYLPLSLVMTT-DKIYNSIYYKNNINIFLHSHSY 528 (965)
Q Consensus 455 ~g~llI~DEv~tg~gr~-G~--~~~~~~~~~~pDivt~s--K~l~gG~~pig~v~~~-~~i~~~~~~~~~~~~~~~~~t~ 528 (965)
||+++|+|+++.++... .+ .++.... ..|+++++ |.++++ ...|+++.+ +.+.+.+.. ...+...
T Consensus 223 ~~~~l~vD~a~~~~~~~~~~~~~~~~~~~--~vd~~~~s~hK~~~~p-~g~~~l~~~~~~~~~~~~~------~~~~~~~ 293 (445)
T d3bc8a1 223 YDIPHVVNNAYGLQSSKCMHLIQQGARVG--RIDAFVQSLDKNFMVP-VGGAIIAGFNEPFIQDISK------MYPGRAS 293 (445)
T ss_dssp HTCCEEEECTTTTTCHHHHHHHHHHHHHS--CCCEEEEEHHHHHSCC-SSCEEEEESCHHHHHHHHH------HSCSCBC
T ss_pred hCCcEEEEccchhhhhhccccchhccCcC--CcceEEecCccccccC-CCCceeeeCChHHHHHHHH------HHhhccc
Confidence 99999999999643111 11 1111111 35777765 777665 345566665 455554433 1112222
Q ss_pred CCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHccc-CCC-ceeeeeceeEEEEEEEeecCccchhhHHHHHHHH
Q psy8199 529 SGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLI-THP-KIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVA 606 (965)
Q Consensus 529 ~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~-~~~-~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~ 606 (965)
....+.+.+.+..+....-....++...+.+++.+.|.++. .+. .+...+.......+.+. ............+...
T Consensus 294 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~l~~~~~~~~~~~~l~-~~~~~~~~~~~~l~~~ 372 (445)
T d3bc8a1 294 ASPSLDVLITLLSLGCSGYRKLLKERKEMFVYLSTQLKKLAEAHNERLLQTPHNPISLAMTLK-TIDGHHDKAVTQLGSM 372 (445)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCTTCSSEEEEECT-TTSSSSSCHHHHHHHH
T ss_pred CcchHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHhhcCceeecCCCCCcceEEEee-eccccCCCCHHHHHHH
Confidence 22223333333333221123345566667778888887762 221 12233444444444443 1111112223456677
Q ss_pred HHHcCcEEee-------------------------cCCEEEEeCCcccCHHHHHHHHHhhhcccccHHH
Q psy8199 607 ALKNELLLRP-------------------------IGNTVYLMPPYILNKNEIQHMTSAIFQTFNELDE 650 (965)
Q Consensus 607 l~~~Gi~~~~-------------------------~~~~lR~~p~~~~t~~~i~~~~~~l~~~~~~~~e 650 (965)
|.+.||-... ..+.+|++++..+|++|+|.+++++++++..+++
T Consensus 373 L~~~gI~~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~i~i~~~~~~T~eDID~~v~~L~kilk~~rk 441 (445)
T d3bc8a1 373 LFTRQVSGARAVPLGNVQTVSGHTFRGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLNIVRK 441 (445)
T ss_dssp HHHTTCCSCEEECSCCEEEETTEEEETTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCcceeeccccccchhhhhhhhcCCCCccCCCCeEEEeCcCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 8888763210 0145999999999999999999999887765543
|
| >d1tv8a_ c.1.28.3 (A:) Molybdenum cofactor biosynthesis protein A MoaA {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Radical SAM enzymes family: MoCo biosynthesis proteins domain: Molybdenum cofactor biosynthesis protein A MoaA species: Staphylococcus aureus [TaxId: 1280]
Probab=99.35 E-value=1.5e-11 Score=132.54 Aligned_cols=197 Identities=18% Similarity=0.265 Sum_probs=144.6
Q ss_pred EeeccCCCCCCCCCCCCCCcCCCC---cccccCCCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHh
Q psy8199 685 LSIKTGGCTEDCGYCPQSTHYNTE---ITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK 761 (965)
Q Consensus 685 i~~~s~~C~~~C~fC~~~~~~~~~---~~~~~~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~ 761 (965)
|++ |+.|+.+|.||......... ......++.|++.+.++++.+.|+..+.++||+ |+.. ..+.+++....+
T Consensus 16 iei-T~~CNlrC~~C~~~~~~~~~~~~~~~~~~ls~e~~~~li~~~~~~g~~~v~~~GGE-p~l~---~~~~e~i~~~~~ 90 (327)
T d1tv8a_ 16 LSV-TDRCNFRCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKVYAELGVKKIRITGGE-PLMR---RDLDVLIAKLNQ 90 (327)
T ss_dssp EEC-CSCCSCCCTTTSCTTTSSTTCCCCCGGGSCCHHHHHHHHHHHHHTTCCEEEEESSC-GGGS---TTHHHHHHHHTT
T ss_pred EEe-ccccCCcCcCCCCccccCCCCccCCccccCCHHHHHHHHHHHHHcCCeEEEeCCCc-cccc---ccHHHHHHHHhh
Confidence 778 99999999999643221111 112345899999999999999999999998775 5444 334445554444
Q ss_pred c-C--cEeEEecCCCCHHHHHHHHHhCCCeEeccCCC-CHHHHhcccC-CCCHHHHHHHHHHHHHcCCceeeeEEEecCC
Q psy8199 762 I-G--LETCLTLGMLNENQAYRLKKVGLDYYNHNLDT-SPKLYGDIIS-TRDYENRLNTLKNVRNVGINICCGGIIGLSE 836 (965)
Q Consensus 762 ~-~--~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~~es-~~~~~~~i~~-~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~e 836 (965)
. + ..+.++.+.++++.++.|+++|++.+.+++++ +++.+..+++ +.+++..+++++.++++|+++....++-.+.
T Consensus 91 ~~~~~~~~~Tng~ll~~~~~~~l~~~g~~~i~iSldg~~~e~~~~~rg~~g~~~~~~~~~~~~~~~g~~~~~~~~v~~~~ 170 (327)
T d1tv8a_ 91 IDGIEDIGLTTNGLLLKKHGQKLYDAGLRRINVSLDAIDDTLFQSINNRNIKATTILEQIDYATSIGLNVKVNVVIQKGI 170 (327)
T ss_dssp CTTCCEEEEEECSTTHHHHHHHHHHHTCCEEEEECCCSSHHHHHHHHSSCCCHHHHHHHHHHHHHTTCEEEEEEEECTTT
T ss_pred hccccccccccccccchhHHHHHHHcCCCEEeeecccCCHHHhhhheeeccccchhhhHHHHHHHcCCCcceeEEEecCc
Confidence 2 2 23567889999999999999999999999999 8999999876 5689999999999999999998888776678
Q ss_pred CHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCCCCCCCHHHHHHHHHH
Q psy8199 837 SRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAV 888 (965)
Q Consensus 837 t~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~~~~~~~~~~~~~ia~ 888 (965)
+..+..+.++.+...+ .+...+....+..+.........+.++.......
T Consensus 171 n~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (327)
T d1tv8a_ 171 NDDQIIPMLEYFKDKH--IEIRFIEFMDVGNDNGWDFSKVVTKDEMLTMIEQ 220 (327)
T ss_dssp TGGGHHHHHHHHHHTT--CCEEEEECCCBCSSSSBCCSSCCCHHHHHHHHHH
T ss_pred cccccHHHHHHHHhhc--cccceeeeecccCcccccccccccHHHHHHHHHH
Confidence 8888999999999988 4433333223333333333444566666555444
|
| >d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.34 E-value=6.3e-12 Score=138.79 Aligned_cols=282 Identities=10% Similarity=0.061 Sum_probs=163.7
Q ss_pred cCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEe-cC
Q psy8199 310 TQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYII-TT 388 (965)
Q Consensus 310 ~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 388 (965)
.+.+.+.++|++|||+|++.+++.....+ .+++++++...++++........ ........+ +.
T Consensus 53 ~~~~~~~i~~t~sgT~a~~~~~~~l~~~~-----~~gd~vlv~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~ 116 (382)
T d2bkwa1 53 AASKSQPFVLAGSGTLGWDIFASNFILSK-----APNKNVLVVSTGTFSDRFADCLR-----------SYGAQVDVVRPL 116 (382)
T ss_dssp GGGTCEEEEEESCTTHHHHHHHHHHSCTT-----CSCCEEEEECSSHHHHHHHHHHH-----------HTTCEEEEECCS
T ss_pred cCCCCeEEEEeCcHHHHHHHHHHHHHHhc-----CCCCceEEEEechhhhhhhhhcc-----------cccccccccccc
Confidence 34456679999999999999998653211 35678888887776652211110 011111111 11
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcC--CeEEEecccc
Q psy8199 389 PDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYN--IHLIADEIAV 466 (965)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g--~llI~DEv~t 466 (965)
+.... .+.+.+++++.....+ .+++-. +.+++|...+ ++.+.++|++++ +++++|-+|+
T Consensus 117 ~~~~~------------~~~~~~~~~~~~~~~~--~v~~~~-~~~~tg~~~~----~~~~~~~~~~~~~~~~~~vDa~qs 177 (382)
T d2bkwa1 117 KIGES------------VPLELITEKLSQNSYG--AVTVTH-VDTSTAVLSD----LKAISQAIKQTSPETFFVVDAVCS 177 (382)
T ss_dssp STTSC------------CCHHHHHHHHHHSCCS--EEEEES-EETTTTEECC----HHHHHHHHHHHCTTSEEEEECTTT
T ss_pred CCCCc------------cchhHHHHHhhhccch--heeeee-cccccccccc----chhhhhhccccccceeeeeecccc
Confidence 21111 1346666666543333 344444 5678898888 888888888775 9999999997
Q ss_pred CCCcccccccccccCCCcceeeec--cccCCCcccceeeeecHHHHHhhhcc---CCcccc----------------ccc
Q psy8199 467 GCGRTGKFFACEHAEIWPDFLCLS--KGITGGYLPLSLVMTTDKIYNSIYYK---NNINIF----------------LHS 525 (965)
Q Consensus 467 g~gr~G~~~~~~~~~~~pDivt~s--K~l~gG~~pig~v~~~~~i~~~~~~~---~~~~~~----------------~~~ 525 (965)
+|.. ..+......|++++| |+++|. ..+|+++.++++.+..... +....+ ..+
T Consensus 178 -~g~~----pid~~~~giD~~~~s~~K~l~gP-~G~g~l~vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (382)
T d2bkwa1 178 -IGCE----EFEFDEWGVDFALTASQKAIGAP-AGLSISLCSSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKG 251 (382)
T ss_dssp -TTTS----CCCTTTTTCSEEEEESSSTTCCC-SCEEEEEECHHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCC
T ss_pred -cccc----cccccccCeeEEeecccccCcCC-CchhhhhccHHHHhhhhhcccCCCcccchhhhhhhhhhhhccccccc
Confidence 5422 222223347999886 788664 5678999999887654321 100000 011
Q ss_pred C-CCCCCHHHHHHHHHHHHHHhccc---HHHHHHHHHHHHHHHHHcccCCCcee----eeeceeEEEEEEEeecCccchh
Q psy8199 526 H-SYSGNPLACCAALATLEIFNKDN---ILQRISQDMKKITKALTSLITHPKII----NFRQKGMIWAFDVIIEDPEQIE 597 (965)
Q Consensus 526 ~-t~~~~~~~~aaa~a~L~~~~~~~---~~~~~~~~~~~l~~~L~~l~~~~~i~----~v~g~G~~~~i~~~~~~~~~~~ 597 (965)
. .++.+..+.++..++|+.+.++. ..++.+++.+++++++.+......+. ..+..+ +..+... +
T Consensus 252 ~~~~Tp~~~~i~al~~aL~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~s~~-v~~~~~~--~----- 323 (382)
T d2bkwa1 252 AYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNGLQLTSVSRYPSNMSAHG-LTAVYVA--D----- 323 (382)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTTCCEESSCSSSTTBCSS-CEEEECS--C-----
T ss_pred ccccCCcHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhcccccccccCchhccCCc-EEEEcCC--C-----
Confidence 2 23455567788888999876644 34445566777777775432111111 112222 2344432 2
Q ss_pred hHHHHHHHHHHHcCcEEeec------CCEEEEe-CCcccCHHHHHHHHHhhh
Q psy8199 598 TFSKKFFVAALKNELLLRPI------GNTVYLM-PPYILNKNEIQHMTSAIF 642 (965)
Q Consensus 598 ~~~~~~~~~l~~~Gi~~~~~------~~~lR~~-p~~~~t~~~i~~~~~~l~ 642 (965)
...+.+.|.++||.+..+ ++.+|++ ..+..++++++.+++.++
T Consensus 324 --~~~~~~~L~~~gi~i~~G~~~~~~~~~~Ri~~~G~~~~~e~i~~l~~~l~ 373 (382)
T d2bkwa1 324 --PPDVIAFLKSHGVVIAGGIHKDIGPKYIRIGHMGVTACNKNLPYMKNCFD 373 (382)
T ss_dssp --HHHHHHHHHHTTEECBCCCCTTTGGGEEEECCCGGGTSSTTCTHHHHHHH
T ss_pred --HHHHHHHHHHCCeEEECCCChhhcCCEEEEeCCcCCCCHHHHHHHHHHHH
Confidence 234667788999998753 2579998 445556666666655543
|
| >d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]
Probab=99.33 E-value=2.8e-11 Score=133.24 Aligned_cols=319 Identities=13% Similarity=0.080 Sum_probs=174.9
Q ss_pred CHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCC-CCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEE
Q psy8199 272 NSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQY-KLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFI 350 (965)
Q Consensus 272 ~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~-~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi 350 (965)
+|+|++||.. ....+.+....+...+..+.|+++++. +...++|+.|||+|++.++.... .++++++
T Consensus 30 ~~~Vl~am~~----~~~~hr~~ef~~i~~~~r~~l~~ll~~~~~~~i~~~g~gT~~~~~~~~~~~--------~~~~~~~ 97 (377)
T d1vjoa_ 30 HPSVLQAMNV----SPVGHLDPAFLALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATIANAV--------EPGDVVL 97 (377)
T ss_dssp CHHHHHHHSS----CCCCTTSHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHC--------CTTCEEE
T ss_pred CHHHHHHhCc----CCCCCCCHHHHHHHHHHHHHHHHHhCCCCCeEEEEcCcHHHHHHHHHHhcc--------ccccccc
Confidence 5666666532 111122222345566777788888864 33478888999999999987653 3567777
Q ss_pred EEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccc
Q psy8199 351 CLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPL 430 (965)
Q Consensus 351 ~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~ 430 (965)
+...++++......... ..........+..... +.+..+........ ..|.+.-
T Consensus 98 ~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~--~~v~~~~- 151 (377)
T d1vjoa_ 98 IGVAGYFGNRLVDMAGR-----------YGADVRTISKPWGEVF------------SLEELRTALETHRP--AILALVH- 151 (377)
T ss_dssp EEESSHHHHHHHHHHHH-----------TTCEEEEEECCTTCCC------------CHHHHHHHHHHHCC--SEEEEES-
T ss_pred eeeechhhhhhhhhhhh-----------hcccccccccCCCCcc------------cchhhhhhhhcCcc--eeeeeee-
Confidence 77766654422211111 1111112222211111 12222222222222 3333333
Q ss_pred cccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcceeeec--cccCCCcccceeeeecHH
Q psy8199 431 VQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS--KGITGGYLPLSLVMTTDK 508 (965)
Q Consensus 431 v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~s--K~l~gG~~pig~v~~~~~ 508 (965)
+.+++|.+.| ++++.++|+++|+++++|.+++ +|.. ..+......|++++| |+++|+ -.+|.+..+++
T Consensus 152 ~~~~tg~~~~----i~~i~~~~~~~g~~~~vDa~~~-~g~~----~~~~~~~~~d~~~~s~~K~~~gp-~g~~~~~~~~~ 221 (377)
T d1vjoa_ 152 AETSTGARQP----LEGVGELCREFGTLLLVDTVTS-LGGV----PIFLDAWGVDLAYSCSQKGLGCS-PGASPFTMSSR 221 (377)
T ss_dssp EETTTTEECC----CTTHHHHHHHHTCEEEEECTTT-TTTS----CCCTTTTTCSEEECCSSSTTCSC-SSCEEEEECHH
T ss_pred eeccceeeec----hhhhhhhhhhccceEEEecchh-hhhh----hhcccccccceeeecccccccCC-CEEEEecchhh
Confidence 5678999988 8889999999999999999996 5432 233334457888776 456654 24566777877
Q ss_pred HHHhhhccCCc-cc------------ccccCCC-CCCHHHHHHHHHHHHHHhc---ccHHHHHHHHHHHHHHHHHcccC-
Q psy8199 509 IYNSIYYKNNI-NI------------FLHSHSY-SGNPLACCAALATLEIFNK---DNILQRISQDMKKITKALTSLIT- 570 (965)
Q Consensus 509 i~~~~~~~~~~-~~------------~~~~~t~-~~~~~~~aaa~a~L~~~~~---~~~~~~~~~~~~~l~~~L~~l~~- 570 (965)
.++........ .. .....+. ..+...+.+..+++..+.. +...++.+++.+++.+.+.+...
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~ 301 (377)
T d1vjoa_ 222 AIEKLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLEDIGLS 301 (377)
T ss_dssp HHHHHHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHhhhhccCCCCcceeeccchhhhccCcccccccccceechhhhHHHHhhhhhcCchHHHHHHHHHhhhhhhhhhccCce
Confidence 77654432100 00 0011112 2233344444455544443 33455566667777777765411
Q ss_pred CCceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHH-HcCcEEee-----cCCEEEEeC-CcccCHHHHHHHHHhhhc
Q psy8199 571 HPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAAL-KNELLLRP-----IGNTVYLMP-PYILNKNEIQHMTSAIFQ 643 (965)
Q Consensus 571 ~~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~-----~~~~lR~~p-~~~~t~~~i~~~~~~l~~ 643 (965)
...-...+..+. ..+.+. ++. ....+...|. +.||.+.. .++.+|+++ .+..+.++++++++++++
T Consensus 302 ~~~~~~~rs~~v-~~~~~p--~~~----~~~~l~~~L~~~~gI~v~~G~~~~~~~~~Ris~~g~~~t~edi~~lv~al~~ 374 (377)
T d1vjoa_ 302 LHVEKEYRLPTL-TTVCIP--DGV----DGKAVARRLLNEHNIEVGGGLGELAGKVWRVGLMGFNSRKESVDQLIPALEQ 374 (377)
T ss_dssp BSSCGGGBCSSE-EEEECC--TTC----CHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHH
T ss_pred eecChHhcCCeE-EEEECC--CCC----CHHHHHHHHHhcCCEEEecCcccccCCEEEEecCcCCCCHHHHHHHHHHHHH
Confidence 111112233333 344443 211 1345666664 56998865 246899995 566789999999999876
Q ss_pred cc
Q psy8199 644 TF 645 (965)
Q Consensus 644 ~~ 645 (965)
++
T Consensus 375 ~l 376 (377)
T d1vjoa_ 375 VL 376 (377)
T ss_dssp HH
T ss_pred Hh
Confidence 53
|
| >d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: Glutamate decarboxylase beta, GadB species: Escherichia coli [TaxId: 562]
Probab=99.27 E-value=2.1e-10 Score=127.80 Aligned_cols=356 Identities=8% Similarity=-0.053 Sum_probs=199.8
Q ss_pred cCCcccccccccchhccCCCCCHHHHHHHHHHHhhccccccCCC--CcHHHHHHHHHHHhhcCCCC-----CeEEEcCCh
Q psy8199 251 FSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNL--THKPVIKLSEKLSSLTQYKL-----GHCFYGSDG 323 (965)
Q Consensus 251 ~dG~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~~~~~~~~~~--~~~~~~~la~~l~~~~~~~~-----~~v~~~~sG 323 (965)
.||+.-+++.+.. --+-+|++.+.+.+.+++- ......+ .++...+..+.|+++++... .--.+|+||
T Consensus 50 ~dg~~~~n~asf~----~t~~~~~~~~l~~~~~~~N-~~~~~~~P~~~~lE~~~v~~la~L~~~p~~~~~~~~G~~t~Gg 124 (450)
T d1pmma_ 50 LDGNARQNLATFC----QTWDDENVHKLMDLSINKN-WIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGS 124 (450)
T ss_dssp GSCCGGGBCSCCS----CCCCCHHHHHHHHHTTTCB-TTCTTTSHHHHHHHHHHHHHHHHHTTCCCCTTSCCSEEEESSH
T ss_pred cCCCccccccccc----cCCCCHHHHHHHHHHHhcC-CCCcccCccHHHHHHHHHHHHHHHhCCCccccCCCcCeeeCch
Confidence 4676555554431 1235799888888776552 1111112 23445567777888875321 125899999
Q ss_pred hHHHHHHHHHHHHHHHh----cCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCC
Q psy8199 324 ASAVEVALKMSFHYWYN----KGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNS 399 (965)
Q Consensus 324 seA~~~Al~~a~~~~~~----~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (965)
||||..|+.++|..|.. .|......+++.. ..|.+..-+... +.-+...+|.....+.
T Consensus 125 SeA~~~a~~aar~~~~~~~~~~g~~~~~~~~~~~-~~H~s~~Kaa~~------------~gi~~~~v~~~~~~~~----- 186 (450)
T d1pmma_ 125 SEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCG-PVQICWHKFARY------------WDVELREIPMRPGQLF----- 186 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCCSCCEEEES-SCCHHHHHHHHH------------TTCEEEECCCBTTBCS-----
T ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCCCceEEec-ccHHHHHHHHHH------------cCCCceEeeecCCCCc-----
Confidence 99999999999876533 2433444455543 456553222222 2223445554322222
Q ss_pred hhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHH------HHhcCCeEEEeccccCCCcccc
Q psy8199 400 ANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREI------CNNYNIHLIADEIAVGCGRTGK 473 (965)
Q Consensus 400 ~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l------~~~~g~llI~DEv~tg~gr~G~ 473 (965)
.|+++|+++++ .++++|++.- ..+.+|.+.| +++|.++ |+++|+++++|-++.|+--
T Consensus 187 ------~d~~~L~~~i~---~~t~~Vv~t~-gtt~tG~~dp----v~~i~~i~~~~~~a~~~~i~lHVDAA~gG~~~--- 249 (450)
T d1pmma_ 187 ------MDPKRMIEACD---ENTIGVVPTF-GVTYTGNYEF----PQPLHDALDKFQADTGIDIDMHIDAASGGFLA--- 249 (450)
T ss_dssp ------CCHHHHHHHCC---TTEEEEECBB-SCTTTCBBCC----HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTH---
T ss_pred ------CcHHHHHHHhh---hCceEEEeee-eeccCCCccc----cchhhHHHHHHHHHhccCcEEEeehhhcccee---
Confidence 37888888875 4566776655 5777888776 5555544 5678999999999976521
Q ss_pred cccccc----cCC-Ccceeeecccc-CCCcccceeeeecHHHH--HhhhccCCc-ccccccCCCC--CCHHHHHHHHHHH
Q psy8199 474 FFACEH----AEI-WPDFLCLSKGI-TGGYLPLSLVMTTDKIY--NSIYYKNNI-NIFLHSHSYS--GNPLACCAALATL 542 (965)
Q Consensus 474 ~~~~~~----~~~-~pDivt~sK~l-~gG~~pig~v~~~~~i~--~~~~~~~~~-~~~~~~~t~~--~~~~~~aaa~a~L 542 (965)
.|.... +++ ..|.++++-.- ++++.++|+++.+++-. ..+.....+ ..-....|.. .+.....+..+++
T Consensus 250 p~~~~~~~~~~~~~~aDSi~~s~HK~~~~p~g~g~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~~~~~~l 329 (450)
T d1pmma_ 250 PFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEF 329 (450)
T ss_dssp HHHCTTCCCSTTSTTEEEEEEETTTTTCCCSSCEEEEESSGGGSCGGGCEEEEETTEEEEECCSCCSCBSHHHHHHHHHH
T ss_pred eeechhhhhhhcccceeEeecChhhccCCCCCeeEEEecChhhhhhhcccccCcCCCCcCCCcccCccchHHHHHHHHHH
Confidence 112111 233 47888887432 34446788888875432 111110000 0000111222 2223334445556
Q ss_pred HHHhcc---cHHHHHHHHHHHHHHHHHcccCCCceeeeec-e-eEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEe--
Q psy8199 543 EIFNKD---NILQRISQDMKKITKALTSLITHPKIINFRQ-K-GMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLR-- 615 (965)
Q Consensus 543 ~~~~~~---~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g-~-G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~-- 615 (965)
..+..+ ...++..++.++|.++|++......+....+ . -..++|.+. +.....-....+.+.|.++|..+.
T Consensus 330 ~~~G~~G~~~~~~~~~~la~~l~~~L~~~~~~el~~~~~p~~~l~~V~Fr~~--~~~~~~~~~~~l~~~L~~~Gw~v~~~ 407 (450)
T d1pmma_ 330 LRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLK--DGEDPGYTLYDLSERLRLRGWQVPAF 407 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCEEEEEECCTTTBSSEEEEEEC--TTCCCSSCHHHHHHHHHTTTCBCCEE
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeCCCCCCceEEEEEecC--CcccCCCCHHHHHHHHHHcCCeeecc
Confidence 655443 3566777788888888876532222221111 1 224566554 211111113357889999997653
Q ss_pred --ecC----CEEEEeCCcccCHHHHHHHHHhhhcccccH
Q psy8199 616 --PIG----NTVYLMPPYILNKNEIQHMTSAIFQTFNEL 648 (965)
Q Consensus 616 --~~~----~~lR~~p~~~~t~~~i~~~~~~l~~~~~~~ 648 (965)
|.. ..+|+.+.-..|.++++++++.++++...+
T Consensus 408 ~~p~~~~~~~~lRvvv~~~~t~e~~d~lv~dl~~~v~~l 446 (450)
T d1pmma_ 408 TLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLKYL 446 (450)
T ss_dssp ECCTTCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CcCCCcCCcEEEEEEccCCCCHHHHHHHHHHHHHHHHHH
Confidence 211 379999888899999999999887665544
|
| >d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase ArnB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.27 E-value=1e-10 Score=128.53 Aligned_cols=313 Identities=14% Similarity=0.072 Sum_probs=182.4
Q ss_pred CHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEE
Q psy8199 272 NSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFIC 351 (965)
Q Consensus 272 ~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~ 351 (965)
.++-.+++.+.++... ++ .-+...++++++++.++ .+.+++++|||.|+.+|++... -.++++||+
T Consensus 11 ~~~~~~~~~~~~~~~~-~~----~G~~v~~~E~~la~~~g--~~~ai~~~sgt~Al~~al~al~-------~~~gdeVi~ 76 (376)
T d1mdoa_ 11 GAEELAAVKTVLDSGW-IT----TGPKNQELEAAFCRLTG--NQYAVAVSSATAGMHIALMALG-------IGEGDEVIT 76 (376)
T ss_dssp CHHHHHHHHHHHHHTC-CS----SSHHHHHHHHHHHHHHC--CSEEEEESCHHHHHHHHHHHTT-------CCTTCEEEE
T ss_pred CHHHHHHHHHHHhcCC-Cc----CCHHHHHHHHHHHHHHC--cCeEEEeCCHHHHHHHHHHHhC-------CCCCCEEEE
Confidence 3566688888887642 22 13567899999999994 6899999999999999998641 146788999
Q ss_pred EcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEcccc
Q psy8199 352 LQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLV 431 (965)
Q Consensus 352 ~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v 431 (965)
...+|+.........+..+ +++........ .|+++|++++. +++.+|++-.
T Consensus 77 ~~~~~~~~~~ai~~~g~~p-------------v~~d~~~~~~~-----------~d~~~l~~~i~---~~tkaIi~~h-- 127 (376)
T d1mdoa_ 77 PSMTWVSTLNMIVLLGANP-------------VMVDVDRDTLM-----------VTPEHIEAAIT---PQTKAIIPVH-- 127 (376)
T ss_dssp ESSSCHHHHHHHHHTTCEE-------------EEECBCTTTCC-----------BCHHHHHHHCC---TTEEEECCBC--
T ss_pred ecccccccccchhccccce-------------eeecccccccC-----------CCHHHHHHhcC---CCCeEEEEeC--
Confidence 9888776644444433322 22222111111 26889998885 4577777633
Q ss_pred ccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcceeee--ccccCCCcccceeeeec-HH
Q psy8199 432 QCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCL--SKGITGGYLPLSLVMTT-DK 508 (965)
Q Consensus 432 ~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~--sK~l~gG~~pig~v~~~-~~ 508 (965)
..|...+ +.+|.++|++||++||.|.+|+ +|-.=.......+|. ...+| .|.++.| --|+++.+ ++
T Consensus 128 --~~G~~~~----~~~i~~i~~~~~i~vIeD~a~a-~g~~~~~~~~g~~g~--~~~Sf~~~K~l~~g--~GG~i~t~~~~ 196 (376)
T d1mdoa_ 128 --YAGAPAD----LDAIYALGERYGIPVIEDAAHA-TGTSYKGRHIGARGT--AIFSFHAIKNITCA--EGGIVVTDNPQ 196 (376)
T ss_dssp --GGGCCCC----HHHHHHHHHHHTCCBCEECTTC-TTCEETTEETTSSSE--EEEECCTTSSSCSS--SCEEEEESCHH
T ss_pred --CCCCccc----hhHHHHHHHhcCceEEeccchh-ccCeeCCeecccccC--ccccCCCcCCCCCC--CCCEEEEechh
Confidence 4565555 8899999999999999999997 542200001111221 22334 4877654 23666665 44
Q ss_pred HHHhhhc---cCCc---------------ccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcccC
Q psy8199 509 IYNSIYY---KNNI---------------NIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLIT 570 (965)
Q Consensus 509 i~~~~~~---~~~~---------------~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~~ 570 (965)
+++.+.. .+.. .....+..+..+.+.++.+.+-|+.+ +++.++-++..+++.+.|.++..
T Consensus 197 l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~n~~~~~~~Aai~~~qL~~~--~~~~~~r~~~~~~~~~~L~~~~~ 274 (376)
T d1mdoa_ 197 FADKLRSLKFHGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQLQKL--DALNARRAAIAAQYHQAMADLPF 274 (376)
T ss_dssp HHHHHHHHTBTTEECC-----------CCEESSCCCBCCCCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHHHTSSC
T ss_pred HHHHHHhhcccCCcccccccccccccccccchhcccccccchhhhhhhhhhhhhh--hHHHHHHhhhhhhhhhhcccccc
Confidence 5443321 1100 00112344456677777777777655 34677778888888888877621
Q ss_pred C--Ccee-eeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec--------------------------CCEE
Q psy8199 571 H--PKII-NFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI--------------------------GNTV 621 (965)
Q Consensus 571 ~--~~i~-~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~--------------------------~~~l 621 (965)
. +... .....-..+.+.+ +........+.+.+.|.++||-+++. .+.+
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Rd~l~~~L~~~gI~~~~~y~~~~~~~~~~~~~~~~~~p~a~~~~~~~i 351 (376)
T d1mdoa_ 275 QPLSLPSWEHIHAWHLFIIRV---DEARCGITRDALMASLKTKGIGTGLHFRAAHTQKYYRERFPTLTLPDTEWNSERIC 351 (376)
T ss_dssp EECCCCSSCEECCCSCEEEEC---CHHHHSSCHHHHHHHHHHTTBCCBCCCCCGGGSHHHHHHSTTCCCHHHHHHHTTEE
T ss_pred ccccccccccccccccccccc---ccccchhhHHHHHHHHHHCCCCeeeECcchhcCHHHHhhCCCCCCHHHHHHHhCEE
Confidence 1 1111 1111111112211 10001111346888999999976521 1335
Q ss_pred EEeCCcccCHHHHHHHHHhhhc
Q psy8199 622 YLMPPYILNKNEIQHMTSAIFQ 643 (965)
Q Consensus 622 R~~p~~~~t~~~i~~~~~~l~~ 643 (965)
.+-....+++++++.+++.+.+
T Consensus 352 ~LP~~~~lt~~ei~~I~~~i~~ 373 (376)
T d1mdoa_ 352 SLPLFPDMTESDFDRVITALHQ 373 (376)
T ss_dssp EECCCTTCCHHHHHHHHHHHHH
T ss_pred EccCCCCCCHHHHHHHHHHHHH
Confidence 5544445677777777776654
|
| >d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 3-hydroxykynurenine transaminase species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]
Probab=99.23 E-value=1.8e-10 Score=127.05 Aligned_cols=321 Identities=12% Similarity=0.071 Sum_probs=175.3
Q ss_pred CHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCC-eEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEE
Q psy8199 272 NSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLG-HCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFI 350 (965)
Q Consensus 272 ~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~-~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi 350 (965)
+|+|++|+.+.. . .+.+.-..+...+..+.|+++++.... .++|+.|||+|++.++..+.. ++++++
T Consensus 29 ~~~V~~Am~~~~--~--~hr~~ef~~i~~~~r~~L~~ll~~~~~~~i~~~gsgT~a~ea~~~~l~~--------~~~~vl 96 (388)
T d2ch1a1 29 SKRVLTAMTNTV--L--SNFHAELFRTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLSNLLE--------EGDRVL 96 (388)
T ss_dssp CHHHHHHTTSCC--C--CTTCHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHCC--------TTCEEE
T ss_pred CHHHHHHhCcCC--C--CCCCHHHHHHHHHHHHHHHHHhCCCCCeEEEEcCcHHHHHHHHHHHhcc--------cccccc
Confidence 677777653221 1 112222344556777788888865433 566788999999999887642 456666
Q ss_pred EEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccc
Q psy8199 351 CLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPL 430 (965)
Q Consensus 351 ~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~ 430 (965)
+...+..+........ ........+..+..... +....+..+..... ..+.+--
T Consensus 97 ~~~~g~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~--~~v~~~~- 150 (388)
T d2ch1a1 97 IAVNGIWAERAVEMSE-----------RYGADVRTIEGPPDRPF------------SLETLARAIELHQP--KCLFLTH- 150 (388)
T ss_dssp EEESSHHHHHHHHHHH-----------HTTCEEEEEECCTTSCC------------CHHHHHHHHHHHCC--SEEEEES-
T ss_pred ccccccccccchhhhh-----------hhccccccccccccccc------------chhhhhhhhccCCc--ceeeeee-
Confidence 6655444432111110 01112233333322111 22333334433233 3333333
Q ss_pred cccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcceeeecc--ccCCCcccceeeeecHH
Q psy8199 431 VQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSK--GITGGYLPLSLVMTTDK 508 (965)
Q Consensus 431 v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~sK--~l~gG~~pig~v~~~~~ 508 (965)
+.+.+|.+.+ ++++.++|+++|+++++|-+++ +|. . ..+......|++++|+ +++|. -.+|.+..+++
T Consensus 151 ~~t~tG~~~~----~~~i~~~~~~~~~~~~vD~~ss-~g~--~--pid~~~~~~d~~~~s~~K~~~gp-~G~g~~~~~~~ 220 (388)
T d2ch1a1 151 GDSSSGLLQP----LEGVGQICHQHDCLLIVDAVAS-LCG--V--PFYMDKWEIDAVYTGAQKVLGAP-PGITPISISPK 220 (388)
T ss_dssp EETTTTEECC----CTTHHHHHHHTTCEEEEECTTT-BTT--B--CCCTTTTTCCEEECCCC-CCCCC-SSCEEEEECHH
T ss_pred cccccccccc----hhhhcchhccccceeeeeeeec-ccc--c--ccchhccCceEEEEccccccCCC-CeEEEEeccHH
Confidence 4678888888 7779999999999999999997 432 1 2233344578998875 56553 35677778877
Q ss_pred HHHhhhccC-Ccccc---------------cccCC-CCCCHHHHHHHHHHHHHHhcccH---HHHHHHHHHHHHHHHHcc
Q psy8199 509 IYNSIYYKN-NINIF---------------LHSHS-YSGNPLACCAALATLEIFNKDNI---LQRISQDMKKITKALTSL 568 (965)
Q Consensus 509 i~~~~~~~~-~~~~~---------------~~~~t-~~~~~~~~aaa~a~L~~~~~~~~---~~~~~~~~~~l~~~L~~l 568 (965)
..+.....+ +...+ ..+.+ +..+.....++.++++.+..... ..+.+.....+...+...
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (388)
T d2ch1a1 221 ALDVIRNRRTKSKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGKM 300 (388)
T ss_dssp HHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhcccCccccccccchhhhhhhcccccccccCccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhc
Confidence 666443211 11100 01122 23455566777777776654332 223333333344444333
Q ss_pred cCCCcee--eeeceeEEEEEEEeecCccchhhHHHHHHHHHHH-cCcEEeec-----CCEEEEe-CCcccCHHHHHHHHH
Q psy8199 569 ITHPKII--NFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALK-NELLLRPI-----GNTVYLM-PPYILNKNEIQHMTS 639 (965)
Q Consensus 569 ~~~~~i~--~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~-~Gi~~~~~-----~~~lR~~-p~~~~t~~~i~~~~~ 639 (965)
.-...+. ..++. .+..+.+. ++. ...++...|.+ .||.++++ ++.+|++ .....+.++|+.+++
T Consensus 301 ~~~~~~~~~~~rs~-~v~~~~~p--~g~----~~~~l~~~l~~~~gI~v~~G~~~~~~~~~RIs~~g~~~t~edI~~ll~ 373 (388)
T d2ch1a1 301 GLDIFVKDPRHRLP-TVTGIMIP--KGV----DWWKVSQYAMNNFSLEVQGGLGPTFGKAWRVGIMGECSTVQKIQFYLY 373 (388)
T ss_dssp TCCBSSCSGGGBCT-TEEEEECC--TTC----CHHHHHHHHHHHHCBCCBCCCGGGTTTEEEEECCGGGCSHHHHHHHHH
T ss_pred ccccccCCHHHhCC-eEEEEECC--CCC----CHHHHHHHHhhcCCEEEeCCCccccCCEEEEcCCcCCCCHHHHHHHHH
Confidence 1111111 12222 24455553 211 13356666654 59988763 4689999 456668999999999
Q ss_pred hhhccccc
Q psy8199 640 AIFQTFNE 647 (965)
Q Consensus 640 ~l~~~~~~ 647 (965)
++++++.+
T Consensus 374 alke~L~~ 381 (388)
T d2ch1a1 374 GFKESLKA 381 (388)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 98876643
|
| >d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Pseudomonas putida [TaxId: 303]
Probab=99.22 E-value=1.7e-10 Score=124.01 Aligned_cols=221 Identities=12% Similarity=0.122 Sum_probs=149.9
Q ss_pred cCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCc
Q psy8199 291 LSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQ 370 (965)
Q Consensus 291 ~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~ 370 (965)
+++..++....|+++|+++- +.+.++.++||..|+.+++....+ .+++||+.+..|+|.....
T Consensus 53 Y~R~~nPT~~~LE~~la~LE--g~~~a~~~~SGmaAi~~~l~~l~~--------~Gd~vl~~~~~Yg~t~~l~------- 115 (392)
T d1gc0a_ 53 YSRISNPTLNLLEARMASLE--GGEAGLALASGMGAITSTLWTLLR--------PGDEVLLGNTLYGCTFAFL------- 115 (392)
T ss_dssp ----CCHHHHHHHHHHHHHH--TCSEEEEESSHHHHHHHHHHHHCC--------TTCEEEEESSCCSHHHHHH-------
T ss_pred ecCCCChHHHHHHHHHHHHh--CCcceeehhhHHHHHHHHHHhhcc--------CCCeeecccccchhhhhhh-------
Confidence 35667889999999999998 457888899999999998876643 6789999999998873221
Q ss_pred CccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHH
Q psy8199 371 SFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVRE 450 (965)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~ 450 (965)
......+...+.++.. .|.++++++++ +++.+|++|. +.|++..+++ +++|++
T Consensus 116 --~~~~~~~Gi~~~~~d~-----------------~d~~~~~~ai~---~~t~lv~~Es-p~NP~l~v~D----i~~i~~ 168 (392)
T d1gc0a_ 116 --HHGIGEFGVKLRHVDM-----------------ADLQALEAAMT---PATRVIYFES-PANPNMHMAD----IAGVAK 168 (392)
T ss_dssp --HHTGGGGTCEEEEECT-----------------TCHHHHHHHCC---TTEEEEEEES-SCTTTCCCCC----HHHHHH
T ss_pred --hhhhccCCcccccCCc-----------------cCHHHHHHhCC---CCCeEEEecc-cccceeeecc----hHHHHH
Confidence 1111222223444432 36788888874 5789999999 8999998888 999999
Q ss_pred HHHhcCCeEEEeccccCCCcccccccccccCCCcceee--eccccCC-CcccceeeeecHHHHHhhhccCCcccccccCC
Q psy8199 451 ICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLC--LSKGITG-GYLPLSLVMTTDKIYNSIYYKNNINIFLHSHS 527 (965)
Q Consensus 451 l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt--~sK~l~g-G~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t 527 (965)
+|+++|+++|+|-.... +..+.-+....|+++ ..|-++| +-.-.|+++++++.+...+.. ..+ ...|.
T Consensus 169 ia~~~g~~~vvDnT~at------P~~~~Pl~~GaDivihS~TKyi~Ghsd~~~G~v~~~~~~~~~~r~~-~~~-~~~G~- 239 (392)
T d1gc0a_ 169 IARKHGATVVVDNTYCT------PYLQRPLELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQ-GLK-DMTGA- 239 (392)
T ss_dssp HHGGGTCEEEEECTTTH------HHHCCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHT-HHH-HHTCC-
T ss_pred HHHhcCCEEEEecCccC------ccccChHHhCCCEEEEecceeecCCcccccccccchhHHHHHHHHH-HHH-HccCC-
Confidence 99999999999987541 122333344578875 6798876 334556788888776554320 000 01233
Q ss_pred CCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHc
Q psy8199 528 YSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTS 567 (965)
Q Consensus 528 ~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~ 567 (965)
..+|..+...+..|+.+.- ..++..++...+.+.|++
T Consensus 240 -~~~p~da~ll~rgl~TL~l--Rm~~~~~nA~~lA~~L~~ 276 (392)
T d1gc0a_ 240 -VLSPHDAALLMRGIKTLNL--RMDRHCANAQVLAEFLAR 276 (392)
T ss_dssp -CCCHHHHHHHHHHHTTHHH--HHHHHHHHHHHHHHHHHT
T ss_pred -cCChhhHHHHHhccccHHH--HHHHHHHHHHHHHHHHHh
Confidence 3468888888777765542 245556677777777754
|
| >d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Citrobacter freundii [TaxId: 546]
Probab=99.20 E-value=4.8e-10 Score=120.51 Aligned_cols=244 Identities=12% Similarity=0.138 Sum_probs=161.1
Q ss_pred ccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCC
Q psy8199 290 MLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNI 369 (965)
Q Consensus 290 ~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~ 369 (965)
.+++..++....|+++|+++-+ -+..+.++||..|+.+++.... ..+++||+.+..|.|.....
T Consensus 56 ~Y~R~~nPT~~~LE~~la~LEg--g~~a~~~sSGmaAi~~~l~~ll--------~~Gd~vi~~~~~Yg~t~~~~------ 119 (397)
T d1y4ia1 56 IYTRLGNPTTDALEKKLAVLER--GEAGLATASGISAITTTLLTLC--------QQGDHIVSASAIYGCTHAFL------ 119 (397)
T ss_dssp CCCTTSCHHHHHHHHHHHHHHT--CSEEEEESSHHHHHHHHHHHHC--------CTTCEEEEESSSCHHHHHHH------
T ss_pred eeeCCCCHHHHHHHHHHHHHhC--CccceeehHHHHHHHHHHhhcc--------CCCCeeeeecccccccchhh------
Confidence 3466788999999999999984 5678889999999998886554 36789999999997762111
Q ss_pred cCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHH
Q psy8199 370 QSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVR 449 (965)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~ 449 (965)
...+..+...+.++.. .|.+.++++++ +++.+|++|. +.|+...+.. +++|.
T Consensus 120 ---~~~l~~~Gi~~~~vd~-----------------~d~~~~~~~i~---~~Tklv~~Es-p~NP~l~v~D----i~~i~ 171 (397)
T d1y4ia1 120 ---SHSMPKFGINVRFVDA-----------------GKPEEIRAAMR---PETKVVYIET-PANPTLSLVD----IETVA 171 (397)
T ss_dssp ---HTHHHHTTCEEEEECT-----------------TSHHHHHHHCC---TTEEEEEEES-SCTTTCCCCC----HHHHH
T ss_pred ---hcccCCCceEeeccCC-----------------CCHHHHHHhcC---CCCcEEEecC-Ccccceeecc----cHHHH
Confidence 1112222233444432 36788888874 5799999999 8888887877 99999
Q ss_pred HHHHhcCCeEEEeccccCCCcccccccccccCCCcceee--eccccCCCc-ccceeeeecHHHHHhhhccCCcccccccC
Q psy8199 450 EICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLC--LSKGITGGY-LPLSLVMTTDKIYNSIYYKNNINIFLHSH 526 (965)
Q Consensus 450 ~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt--~sK~l~gG~-~pig~v~~~~~i~~~~~~~~~~~~~~~~~ 526 (965)
++|+++|+++|+|-.... ...++-+....|+++ +.|-++|.. .-.|+++++++.+...+.. .+....
T Consensus 172 ~iA~~~gi~~vvDnT~at------P~~~~Pl~~GaDivihS~TKyi~Ghsdvl~G~v~~~~~~~~~~r~~----~~~~~~ 241 (397)
T d1y4ia1 172 GIAHQQGALLVVDNTFMS------PYCQQPLQLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFV----GLKDIT 241 (397)
T ss_dssp HHHHHTTCEEEEECTTTC------TTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHT----HHHHTT
T ss_pred HHhhcCCceEEecCcccC------cccCcchhcCCCEEEEehhhhcCCCcceeeeccCCCHHHHHHHHHH----HHHhCc
Confidence 999999999999987532 223333444568875 679887732 3446788888776543210 011111
Q ss_pred CCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHccc-----CCCcee----------eeeceeEEEEEEEe
Q psy8199 527 SYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLI-----THPKII----------NFRQKGMIWAFDVI 589 (965)
Q Consensus 527 t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~-----~~~~i~----------~v~g~G~~~~i~~~ 589 (965)
.-..+|..+..++..|+.+.- ..++-.++...+.+.|++.. .+|++. ...+-|.+++|++.
T Consensus 242 G~~l~p~~a~l~~rgl~TL~l--Rm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~h~~~~~~~~g~gg~~sf~~~ 317 (397)
T d1y4ia1 242 GGCMSPFNAWLTLRGVKTLGI--RMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIA 317 (397)
T ss_dssp CCCCCHHHHHHHHHHHTTHHH--HHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTCTTHHHHHHHCSSCCSEEEEEET
T ss_pred CCcCCHHHHHHHHcCcCcHHH--HHHHHHHHHHHHHHHHHhCCCcCeEeCCCCCCCccccccccccCCCCeEEEEEec
Confidence 223468888877777765532 24555666777777776431 133321 13345888998875
|
| >d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=99.20 E-value=5e-10 Score=120.57 Aligned_cols=242 Identities=15% Similarity=0.141 Sum_probs=157.4
Q ss_pred cCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCc
Q psy8199 291 LSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQ 370 (965)
Q Consensus 291 ~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~ 370 (965)
+++..++....|+++|+++- +.+.++.++||..|+..++.... ..+++||+.+..|.|.......
T Consensus 61 Y~R~~nPt~~~LE~~la~LE--gg~~a~~~sSGMaAi~~~l~~l~--------~~Gd~iv~~~~~Yg~t~~l~~~----- 125 (398)
T d1qgna_ 61 YGRYGNPTTVVLEEKISALE--GAESTLLMASGMCASTVMLLALV--------PAGGHIVTTTDCYRKTRIFIET----- 125 (398)
T ss_dssp BGGGCCHHHHHHHHHHHHHH--TCSEEEEESCHHHHHHHHHHHHS--------CSSCEEEEETTSCHHHHHHHHH-----
T ss_pred ecCCCChHHHHHHHHHHHHh--CCceEEEecCcchHHHHHHhhcc--------cccccccccccccchhhhhhcc-----
Confidence 35567889999999999998 45789999999999999887553 3678999999999776322111
Q ss_pred CccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHH
Q psy8199 371 SFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVRE 450 (965)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~ 450 (965)
....+.....++... +.++.++.+. .+++.+|++|. +.|++..++. +++|.+
T Consensus 126 ----~~~~~gi~~~~~~~~-----------------~~~~~~~~~~--~~~t~~v~~Es-psNP~l~v~D----i~~ia~ 177 (398)
T d1qgna_ 126 ----ILPKMGITATVIDPA-----------------DVGALELALN--QKKVNLFFTES-PTNPFLRCVD----IELVSK 177 (398)
T ss_dssp ----TGGGGTCEEEEECSS-----------------CHHHHHHHHH--HSCEEEEEEES-SCTTTCCCCC----HHHHHH
T ss_pred ----ccccccccccccccc-----------------chhhhhhhhc--cccceEEEccC-ccccccccch----HHHHHH
Confidence 111122233343321 2233333222 35789999999 8888887777 999999
Q ss_pred HHHhcCCeEEEeccccCCCcccccccccccCCCcceee--eccccCC-CcccceeeeecHHHHHhhhccCCcccccccCC
Q psy8199 451 ICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLC--LSKGITG-GYLPLSLVMTTDKIYNSIYYKNNINIFLHSHS 527 (965)
Q Consensus 451 l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt--~sK~l~g-G~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t 527 (965)
+|+++|+++|+|..... +..+.-+....|+++ .+|-++| +-.-.|++.++++++..+.. +.....
T Consensus 178 ia~~~g~~~vVDnT~at------P~~~~Pl~~GaDiVihS~TKy~~Ghsdv~~G~v~~~~~~~~~~~~------~~~~~G 245 (398)
T d1qgna_ 178 LCHEKGALVCIDGTFAT------PLNQKALALGADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRN------LHHILG 245 (398)
T ss_dssp HHHHTTCEEEEECTTTC------TTTCCTTTTTCSEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHH------HHHHHC
T ss_pred HHhhcCCEEEecceeec------cccCCchhhCCCEEEEechhhcCcccceeehhhcchhhhhhhhhh------hcccCC
Confidence 99999999999987532 223333455578885 6798876 32345677788887776654 111112
Q ss_pred CCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHccc-----CCCceee----------eeceeEEEEEEEe
Q psy8199 528 YSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLI-----THPKIIN----------FRQKGMIWAFDVI 589 (965)
Q Consensus 528 ~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~-----~~~~i~~----------v~g~G~~~~i~~~ 589 (965)
-..+|..+...+..|+.+.- -.++..++...+.+.|++-. .+|++.. ..|-|.++.|++.
T Consensus 246 ~~l~p~~a~ll~rgl~TL~l--Rm~~~~~nA~~lA~~L~~hp~V~~V~yPgL~s~p~~~~~~~~~~g~g~~~sf~~~ 320 (398)
T d1qgna_ 246 GALNPNAAYLIIRGMKTLHL--RVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVD 320 (398)
T ss_dssp CCCCHHHHHHHHHHGGGHHH--HHHHHHHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEES
T ss_pred CcCCHHHHHHHHhcchHHHH--HHHHHHHHHHHHHHHHHhCCCeeecCCCCCCCCcchhhhhhhcCCCCceeeeeec
Confidence 23578887777777665432 24555666777777776431 2343321 3455788888875
|
| >d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Ornithine decarboxylase major domain domain: Ornithine decarboxylase major domain species: Lactobacillus sp., strain 30a [TaxId: 1591]
Probab=99.19 E-value=6e-10 Score=125.77 Aligned_cols=325 Identities=10% Similarity=-0.011 Sum_probs=167.1
Q ss_pred CCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccc-cccccCC-cC
Q psy8199 294 LTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLG-ALAVTNI-QS 371 (965)
Q Consensus 294 ~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~-~~~~~~~-~~ 371 (965)
.+.....++.+++++.+ +.++++|++|||++...|+-.+.. .++++||+ +...|.+.+. ...+.+. +.
T Consensus 63 ~~~~~i~eae~~~A~~~--ga~~a~f~~~Gtt~~n~a~i~a~~-------~~gd~Vi~-~~~~H~Sv~~~~~~l~~~~~~ 132 (462)
T d1c4ka2 63 IHEGPAVAAEKHAARVY--NADKTYFVLGGSSNANNTVTSALV-------SNGDLVLF-DRNNHKSVYNSALAMAGGRPV 132 (462)
T ss_dssp TTBTHHHHHHHHHHHHT--TCSEEEEESSHHHHHHHHHHHHHC-------CTTCEEEE-ETTCCHHHHHHHTTTTCCEEE
T ss_pred CCCHHHHHHHHHHHHHh--CCCeEEEECCchHHHHHHHHHHhc-------CCCCeEEe-cccchHHHHHHHHHHhcCCce
Confidence 34567788889999999 468999999998887777654432 24555555 5566776543 2222221 11
Q ss_pred ccchhcccCCCeeEecCCCCCCCCCCCChhHHHHH-HHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHH
Q psy8199 372 FKEIYTSLLNKTYIITTPDSRNINKGNSANEIARC-AIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVRE 450 (965)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~ 450 (965)
+...... ..+...-+.+. .......... +..++++++. .+...+++.. +++..|.+.+ +++|.+
T Consensus 133 ~~~~~~~-~~g~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~---~~~~~v~v~~-~~~~~G~~~d----l~~I~~ 197 (462)
T d1c4ka2 133 YLQTNRN-PYGFIGGIYDS------DFDEKKIRELAAKVDPERAKW---KRPFRLAVIQ-LGTYDGTIYN----AHEVVK 197 (462)
T ss_dssp EECEEEC-TTCCEEEECGG------GSCHHHHHHHTTTSSHHHHTC---SCCBSEEEEE-SBCTTSEEEC----HHHHHH
T ss_pred eeecccc-cccccCCCChH------HhhHHHHHhhhhhhcHHhhhc---cCCceeEEEE-eeeeccchhh----HHHHHH
Confidence 1110000 00000000000 0001001000 0112233322 2222233333 4578898888 999999
Q ss_pred HHHhcCCeEEEeccccCCCccccccc--ccccC------CCcceeee--ccccCCCcccceeeee-cHHHHHhhhccC--
Q psy8199 451 ICNNYNIHLIADEIAVGCGRTGKFFA--CEHAE------IWPDFLCL--SKGITGGYLPLSLVMT-TDKIYNSIYYKN-- 517 (965)
Q Consensus 451 l~~~~g~llI~DEv~tg~gr~G~~~~--~~~~~------~~pDivt~--sK~l~gG~~pig~v~~-~~~i~~~~~~~~-- 517 (965)
+|++||++|++||++........... ....+ ...|++++ .|.+++. ..|+++. ++..+.......
T Consensus 198 ia~~~g~~l~vD~A~~~~~~~~~~~~~~~~~~g~~~~~~~~~D~~~~S~HK~lg~~--~~g~ll~~~~~~~~~~~~~~~~ 275 (462)
T d1c4ka2 198 RIGHLCDYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGF--SQTSQIHKKDSHIKGQLRYCDH 275 (462)
T ss_dssp HHGGGBSEEEEECTTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCC--TTCEEEEEECGGGTTSTTCCCH
T ss_pred HHHHcCCEEEEechhhccccccCcCCcchhhccccccccCCccEEEEecCcccccc--cceEEEEeccccccccchhhhH
Confidence 99999999999999863211111111 11112 12478765 5877652 3344544 333222111000
Q ss_pred --CcccccccCCCCCCHHHHHHHHHHHHHHhc---ccHHHHHHHHHHHHHHHHHcccCCCc------e------------
Q psy8199 518 --NINIFLHSHSYSGNPLACCAALATLEIFNK---DNILQRISQDMKKITKALTSLITHPK------I------------ 574 (965)
Q Consensus 518 --~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~~------i------------ 574 (965)
..+......|.+++...+++..++..++.. +.+.++..++.+++++++.++...-. +
T Consensus 276 ~~~~~~~~~~~t~sp~~~~~asl~~a~~~~~~~~g~~l~~~~~~~a~~~r~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~ 355 (462)
T d1c4ka2 276 KHFNNSFNLFMSTSPFYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTED 355 (462)
T ss_dssp HHHHHHHHHHSCSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCHHH
T ss_pred HHHHHhhhhcccCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccccccccccchHh
Confidence 000111223445566666666666665543 34567777888888888876522100 0
Q ss_pred -------------------eeeeceeEE-----EEEEEe---ecCccch--hhHHHHHHHHHHHcCcEEeec-CCEEEEe
Q psy8199 575 -------------------INFRQKGMI-----WAFDVI---IEDPEQI--ETFSKKFFVAALKNELLLRPI-GNTVYLM 624 (965)
Q Consensus 575 -------------------~~v~g~G~~-----~~i~~~---~~~~~~~--~~~~~~~~~~l~~~Gi~~~~~-~~~lR~~ 624 (965)
..+.....+ +.+... ...+..+ .-.+..+.+.|.++||.+... .+.+||+
T Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~k~~l~~~gi~~~~g~~~~~G~~~~~~~~~L~~~gI~~e~~~~~~i~~~ 435 (462)
T d1c4ka2 356 MANNIDYWRFEKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYLRDHGIIPEKSDLNSILFL 435 (462)
T ss_dssp HTTCGGGGBCCTTCTTTCCTTCCTTCEEECTTEEEEECSSEETTTTEECSSCCCHHHHHHHHHHTTCCCSEECSSEEEEE
T ss_pred hhcccchhccCCcchhccccccCccceecccceeEEecCCccccccchhhcCCcHHHHHHHHHHcCCeeeccCCCeEEEE
Confidence 000000111 111110 0000000 011345678888999977544 3789999
Q ss_pred CCcccCHHHHHHHHHhhhccc
Q psy8199 625 PPYILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 625 p~~~~t~~~i~~~~~~l~~~~ 645 (965)
.+...|+++++.+++++.+..
T Consensus 436 ~s~~~T~edid~li~aL~ei~ 456 (462)
T d1c4ka2 436 MTPAETPAKMNNLITQLLQLQ 456 (462)
T ss_dssp CCTTCCHHHHHHHHHHHHHHH
T ss_pred ecCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999887643
|
| >d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: DOPA decarboxylase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.14 E-value=1.4e-09 Score=121.67 Aligned_cols=311 Identities=12% Similarity=0.048 Sum_probs=176.5
Q ss_pred HHHHHHHHHHHhhcCCC---------CCeEEEcCChhHHHHHHHHHHHHHHHhc------CCC----CceEEEEEcCCcc
Q psy8199 297 KPVIKLSEKLSSLTQYK---------LGHCFYGSDGASAVEVALKMSFHYWYNK------GFL----NKKKFICLQNSYH 357 (965)
Q Consensus 297 ~~~~~la~~l~~~~~~~---------~~~v~~~~sGseA~~~Al~~a~~~~~~~------g~~----~~~~vi~~~~~yH 357 (965)
....++.+.++++++.. -..-++++|||+||..|+.+||.....+ |.. .+.-++.....-|
T Consensus 113 ~iE~~v~~wl~~l~g~p~~~~~~~~~~~~G~~~~Ggs~anl~al~~AR~~~~~~~~~~~~g~~~~~~~~~~vv~~s~~~H 192 (476)
T d1js3a_ 113 ELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAH 192 (476)
T ss_dssp HHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEEETTCC
T ss_pred HHHHHHHHHHHHHhCCCcccccCCCCCCCceECCcHHHHHHHHHHHHHHHHHHhhcccccCcccccccCceEEEeccccc
Confidence 33455667778877532 1246799999999999999999753211 111 1233444444445
Q ss_pred CCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhC---CCcEEEEEEccccccC
Q psy8199 358 GETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKN---HNKIAAIIIEPLVQCA 434 (965)
Q Consensus 358 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~---~~~~aaii~ep~v~~~ 434 (965)
-+-.-+....| -+...+|...... -|+++|++.|++. +....+|+..- ....
T Consensus 193 ~Si~ka~~~lG------------l~~~~v~~d~~~~------------md~~~L~~~i~~~~~~g~~p~~Vvata-Gtt~ 247 (476)
T d1js3a_ 193 SSVERAGLIGG------------VKLKAIPSDGKFA------------MRASALQEALERDKAAGLIPFFVVATL-GTTS 247 (476)
T ss_dssp HHHHHHHHHHT------------CEEEEECCCTTSC------------CCHHHHHHHHHHHHHTTCEEEEEEEEB-SCTT
T ss_pred HHHHHHHHhcC------------ceEEEeccCCCCC------------cCHHHHHHHHHHHHhcCCCcEEEeecC-CCcc
Confidence 54333222222 2344555433222 3788999888653 34455666655 5677
Q ss_pred CCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCC-Ccceeeec--cccCCCcccceeeeecHH--H
Q psy8199 435 GGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEI-WPDFLCLS--KGITGGYLPLSLVMTTDK--I 509 (965)
Q Consensus 435 ~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~-~pDivt~s--K~l~gG~~pig~v~~~~~--i 509 (965)
+|.+-| +++|.++|++||+++++|-++.|+...-........|+ ..|.+++. |.+... ++.|+++.++. +
T Consensus 248 ~G~iDp----l~~I~~i~~~~~~wlHVDAA~Gg~~~~~~~~~~~~~gi~~aDSit~d~HK~l~~P-~~~g~~l~r~~~~~ 322 (476)
T d1js3a_ 248 CCSFDN----LLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVN-FDCSAMWVKRRTDL 322 (476)
T ss_dssp TCCBCC----HHHHHHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCC-SSCEEEEESCHHHH
T ss_pred ceeecc----HHHHHHHHHhcCcEEEEecccchhhhhhcchhhhhcCCcccceeeecCccccccC-CcceeecccchHHH
Confidence 898888 99999999999999999999877633221111122355 47888874 765554 47788887643 2
Q ss_pred HHhhhccCCc-----------ccccccCCCCCCHHHHHHHHHHHHHHhccc---HHHHHHHHHHHHHHHHHcccCCCcee
Q psy8199 510 YNSIYYKNNI-----------NIFLHSHSYSGNPLACCAALATLEIFNKDN---ILQRISQDMKKITKALTSLITHPKII 575 (965)
Q Consensus 510 ~~~~~~~~~~-----------~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~---~~~~~~~~~~~l~~~L~~l~~~~~i~ 575 (965)
...+...... ..+...+.-.+-+........+++.+..++ ..++..++.+++.+.|++. |.+.
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sr~~~al~lw~~l~~~G~~g~~~~i~~~~~lA~~l~~~l~~~---~~fe 399 (476)
T d1js3a_ 323 TGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQD---PRFE 399 (476)
T ss_dssp HGGGC------------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---TTEE
T ss_pred HHHHhcChhhhccccccccccccccccccccchhhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcC---CCeE
Confidence 2222211000 000111111122222233344555544443 4555556677777776554 5554
Q ss_pred ee-eceeEEEEEEEeecCccchhhHHHHHHHHHHHcC-cEEeec---C-CEEEEeCC-cccCHHHHHHHHHhhhccc
Q psy8199 576 NF-RQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNE-LLLRPI---G-NTVYLMPP-YILNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 576 ~v-~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~G-i~~~~~---~-~~lR~~p~-~~~t~~~i~~~~~~l~~~~ 645 (965)
.+ ++.-.++.|.+. .. .....++.+++.+.| +++.+. + -++|++.. ...++++++.+++.+++..
T Consensus 400 l~~~p~l~iV~Fr~~-~~----d~~n~~l~~~l~~~G~~~~s~t~~~g~~~lR~~i~n~~Tt~~did~~~~~i~~~a 471 (476)
T d1js3a_ 400 VCAEVTLGLVCFRLK-GS----DGLNEALLERINSARKIHLVPCRLRGQFVLRFAICSRKVESGHVRLAWEHIRGLA 471 (476)
T ss_dssp ECSCCCSSEEEEEES-SC----HHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred EECCCceEEEEEEcc-CC----hHHHHHHHHHHHhcCCEEEeeeeECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 32 333445566554 11 233456778888888 334332 2 37999864 5578889999998887543
|
| >d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.12 E-value=1.3e-09 Score=116.94 Aligned_cols=219 Identities=14% Similarity=0.185 Sum_probs=142.7
Q ss_pred cCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCc
Q psy8199 291 LSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQ 370 (965)
Q Consensus 291 ~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~ 370 (965)
+++..++....|+++|+++-+ -+.++.++||..|+. |+..+. ..+++||+.+..|-|. .....
T Consensus 43 Y~R~~nPt~~~le~~la~LE~--~~~a~~fsSGMaAis-all~ll--------~~Gd~vv~~~~~Yg~t-~~l~~----- 105 (380)
T d1ibja_ 43 YTRSGNPTRDALESLLAKLDK--ADRAFCFTSGMAALS-AVTHLI--------KNGEEIVAGDDVYGGS-DRLLS----- 105 (380)
T ss_dssp BTTTCCHHHHHHHHHHHHHHT--CSEEEEESSHHHHHH-HHHTTS--------CTTCEEEEESSCCHHH-HHHHH-----
T ss_pred eeCCCChHHHHHHHHHHHHcC--CceEEehhhHHHHHH-HHHHhh--------CCCCEEEEEecccccc-cchhh-----
Confidence 356778889999999999984 578889999999985 443221 3678899888777554 21111
Q ss_pred CccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHH
Q psy8199 371 SFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVRE 450 (965)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~ 450 (965)
..+..+...+.++.. .+.+++++++ .+++.+|++|. +.|+...+++ +++|++
T Consensus 106 ---~~~~~~gi~~~~~d~-----------------~~~~~~~~ai---~~~t~li~~Et-psNP~l~v~D----i~~i~~ 157 (380)
T d1ibja_ 106 ---QVVPRSGVVVKRVNT-----------------TKLDEVAAAI---GPQTKLVWLES-PTNPRQQISD----IRKISE 157 (380)
T ss_dssp ---HTSGGGTCEEEEECT-----------------TSHHHHHHHC---CSSEEEEEECS-SCTTTCCCCC----HHHHHH
T ss_pred ---hhhccccccccccCc-----------------chHHHHHHHh---ccCccEEEecc-cccccccccc----HHHHHH
Confidence 111112222333332 3567777777 45789999999 8999988887 999999
Q ss_pred HHHhcCCeEEEeccccCCCcccccccccccCCCcceee--eccccCCCc-ccceeeeec-HHHHHhhhccCCcccccccC
Q psy8199 451 ICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLC--LSKGITGGY-LPLSLVMTT-DKIYNSIYYKNNINIFLHSH 526 (965)
Q Consensus 451 l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt--~sK~l~gG~-~pig~v~~~-~~i~~~~~~~~~~~~~~~~~ 526 (965)
+|+++|+++|+|....+. +.+.-+....|+++ +.|-++|.. .-.|+++.+ +++.+.+... ....|.
T Consensus 158 iA~~~g~~~vVDnT~atP------~~~~Pl~~GaDiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~~~~~----~~~~G~ 227 (380)
T d1ibja_ 158 MAHAQGALVLVDNSIMSP------VLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFL----QNSEGS 227 (380)
T ss_dssp HHHTTTCEEEEECTTTCT------TTCCGGGTTCSEEEEETTTTTTCSSCCCCEEEEECSHHHHHHHHHH----HHHTTC
T ss_pred HHHHcCCeEEeecccccc------ccccccccCCCEEEecccceeccccCccccccccchhhHHHHHHhh----ccccCC
Confidence 999999999999986432 22333344578875 678887732 234555555 5565555431 011222
Q ss_pred CCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcc
Q psy8199 527 SYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSL 568 (965)
Q Consensus 527 t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l 568 (965)
..+|..+...+..|+.+.- ..++..++...+.+.|++-
T Consensus 228 --~l~p~~a~ll~rgl~Tl~l--Rm~~~~~nA~~lA~~L~~h 265 (380)
T d1ibja_ 228 --GLAPFDCWLCLRGIKTMAL--RIEKQQENARKIAMYLSSH 265 (380)
T ss_dssp --BCCHHHHHHHHHHHTTHHH--HHHHHHHHHHHHHHHHHTC
T ss_pred --cCCHHHHHHHHhcchhhhh--hHHHHHHHHHHHHHHHHhC
Confidence 2468888777777765532 2556666777777777653
|
| >d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Escherichia coli [TaxId: 562]
Probab=99.08 E-value=3.4e-09 Score=113.58 Aligned_cols=241 Identities=11% Similarity=0.123 Sum_probs=155.1
Q ss_pred cCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCc
Q psy8199 291 LSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQ 370 (965)
Q Consensus 291 ~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~ 370 (965)
+++..++....|+++|+++- +-+.++.++||..|+..++.... .++++|++.+..|.|......
T Consensus 44 Y~R~~nPt~~~le~~la~LE--gg~~a~~~sSGMaAi~~~l~~l~--------~~gd~vv~~~~~yg~t~~~~~------ 107 (384)
T d1cs1a_ 44 YSRRGNPTRDVVQRALAELE--GGAGAVLTNTGMSAIHLVTTVFL--------KPGDLLVAPHDCYGGSYRLFD------ 107 (384)
T ss_dssp BTTTCCHHHHHHHHHHHHHH--TCSEEEEESSHHHHHHHHHHHHC--------CTTCEEEEETTCCHHHHHHHH------
T ss_pred ccCCCCHHHHHHHHHHHHHh--CCCceEEecChHHHHHHHHhhcc--------cccceecccccccchhhhhhh------
Confidence 35667899999999999998 45788999999999999887654 367889998888866521111
Q ss_pred CccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHH
Q psy8199 371 SFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVRE 450 (965)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~ 450 (965)
...........++.. .|.+++++++. +++.+|++|+ +.|++-.+++ +++|.+
T Consensus 108 ---~~~~~~g~~~~~~d~-----------------~d~~~~~~~~~---~~t~~v~~Es-psNP~l~v~D----i~~i~~ 159 (384)
T d1cs1a_ 108 ---SLAKRGCYRVLFVDQ-----------------GDEQALRAALA---EKPKLVLVES-PSNPLLRVVD----IAKICH 159 (384)
T ss_dssp ---HHHTTTSCEEEEECT-----------------TCHHHHHHHHH---TCCSEEEEEC-SCTTTCCCCC----HHHHHH
T ss_pred ---hhhcccccccccccC-----------------CCHHHHHhhcc---ccccEEEEec-cccccceecc----HHHHhh
Confidence 111111112233222 35677888775 4567899999 8888887777 999999
Q ss_pred HHHhcCCeEEEeccccCCCcccccccccccCCCcceee--eccccCC-Ccccceeeeec-HHHHHhhhccCCcccccccC
Q psy8199 451 ICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLC--LSKGITG-GYLPLSLVMTT-DKIYNSIYYKNNINIFLHSH 526 (965)
Q Consensus 451 l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt--~sK~l~g-G~~pig~v~~~-~~i~~~~~~~~~~~~~~~~~ 526 (965)
+|+++|+++|+|...... ..+.-+....|+++ .+|-++| |=.-.|+++++ +++.+.+.. .....
T Consensus 160 ia~~~g~~~vVDNT~atP------~~~~Pl~~GaDiVvhS~TKyi~Ghsdv~~G~vv~~~~~~~~~~~~------~~~~~ 227 (384)
T d1cs1a_ 160 LAREVGAVSVVDNTFLSP------ALQNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAW------WANNI 227 (384)
T ss_dssp HHHHTTCEEEEECTTTCT------TTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHH------HHHHH
T ss_pred hhhhcCcEEEEeccccCc------ccccccccCCCEEEEccccccccCCCcccccccCCchhhhhhhhh------hhhhh
Confidence 999999999999976321 22333344578874 6798877 32344566664 455444433 11111
Q ss_pred CCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHccc-----CCCcee----------eeeceeEEEEEEEe
Q psy8199 527 SYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLI-----THPKII----------NFRQKGMIWAFDVI 589 (965)
Q Consensus 527 t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~-----~~~~i~----------~v~g~G~~~~i~~~ 589 (965)
....+|..+..++..|+.+.- -.++..++...+.+.|++-. .+|++. ...|-|.++++++.
T Consensus 228 G~~~~p~~a~ll~rgL~TL~l--Rm~~~~~nA~~lA~~L~~hp~V~~V~yPgL~s~p~h~l~~r~~~g~gg~~sf~l~ 303 (384)
T d1cs1a_ 228 GVTGGAFDSYLLLRGLRTLVP--RMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELD 303 (384)
T ss_dssp TCBCCHHHHHHHHHHHTTHHH--HHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEES
T ss_pred hhccccccHHHHhhccchhHH--HHHHHHHHHHHHHHhcccCCceeeeeeccccchhHHHHHHhhcCCCcceeEEeec
Confidence 223578887777777765432 24555667777777775431 123321 13345888888885
|
| >d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) species: Amycolatopsis mediterranei [TaxId: 33910]
Probab=99.08 E-value=4e-09 Score=115.40 Aligned_cols=285 Identities=11% Similarity=0.062 Sum_probs=168.1
Q ss_pred HHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEE
Q psy8199 273 SYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICL 352 (965)
Q Consensus 273 p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~ 352 (965)
.+-.+++.+.++.+... ...-+...++++++++.+ +..++++++|||.|+.+|++.+- -.++++||+.
T Consensus 13 ~~~~~~~~~~l~~g~~~---~~~g~~v~~fE~~~a~~~--g~~~~v~~~SGt~Al~lal~~l~-------~~~gdeVi~p 80 (384)
T d1b9ha_ 13 DAERNGLVRALEQGQWW---RMGGDEVNSFEREFAAHH--GAAHALAVTNGTHALELALQVMG-------VGPGTEVIVP 80 (384)
T ss_dssp HHHHHHHHHHHHTSCCB---TTTCSHHHHHHHHHHHHT--TCSEEEEESCHHHHHHHHHHHTT-------CCTTCEEEEE
T ss_pred HHHHHHHHHHHHcCCee---ecCCHHHHHHHHHHHHHH--CcCeEEEeCCHHHHHHHHHHHcC-------CCCCCEEEEe
Confidence 45677888888875321 122456888999999999 57899999999999999998651 1466889998
Q ss_pred cCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccc
Q psy8199 353 QNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQ 432 (965)
Q Consensus 353 ~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~ 432 (965)
.-+|.......+..+.. .+++........ .|++.+++.+ .+++.+|++..
T Consensus 81 ~~t~~a~~~ai~~~g~~-------------p~~~d~~~~~~~-----------~d~~~~~~~i---~~~tk~i~~~~--- 130 (384)
T d1b9ha_ 81 AFTFISSSQAAQRLGAV-------------TVPVDVDAATYN-----------LDPEAVAAAV---TPRTKVIMPVH--- 130 (384)
T ss_dssp SSSCTHHHHHHHHTTCE-------------EEEECBCTTTCC-----------BCHHHHHHHC---CTTEEEECCBC---
T ss_pred ccccccccccccccccc-------------cccccccccccc-----------cchhhhcccc---ccccccccccc---
Confidence 87775543333333321 223332111111 2567777766 45677776544
Q ss_pred cCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcceeee----ccccCCCcccceeeeec-H
Q psy8199 433 CAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCL----SKGITGGYLPLSLVMTT-D 507 (965)
Q Consensus 433 ~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~----sK~l~gG~~pig~v~~~-~ 507 (965)
..|.... +.+++++|+++|+++|.|-+|+ +|-. +.-...|-.-|+.++ +|.++.| --|+++++ +
T Consensus 131 -~~g~~~d----~~~i~~~~~~~~i~lieD~a~a-~ga~---~~g~~~g~~g~~~~~Sf~~~K~i~~g--~GG~i~t~~~ 199 (384)
T d1b9ha_ 131 -MAGLMAD----MDALAKISADTGVPLLQDAAHA-HGAR---WQGKRVGELDSIATFSFQNGKLMTAG--EGGAVVFPDG 199 (384)
T ss_dssp -GGGCCCC----HHHHHHHHHHHTCCBCEECTTC-TTCE---ETTEEGGGSSSCEEEECCTTSSSCSS--SCEEEEECTT
T ss_pred -ccccccc----cccchhhhhhhhhhhhhhhcee-cccc---cCCEecCcccccceeccccccccccc--ccchhhhhhH
Confidence 3444444 8899999999999999999997 4322 111112223355543 5877654 23566664 4
Q ss_pred HHHHhhh---ccCCc-----c---cccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcccCC--Cce
Q psy8199 508 KIYNSIY---YKNNI-----N---IFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITH--PKI 574 (965)
Q Consensus 508 ~i~~~~~---~~~~~-----~---~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~~~--~~i 574 (965)
++.+.+. ..+.. . ....|..+..+.+.++.+++-|+.++ +..++-+++.+++.+.|..+... +..
T Consensus 200 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~G~n~rms~l~Aaig~~qL~~ld--~~~~~R~~~~~~y~~~L~~~~~i~~~~~ 277 (384)
T d1b9ha_ 200 ETEKYETAFLRHSCGRPRDDRRYFHKIAGSNMRLNEFSASVLRAQLARLD--EQIAVRDERWTLLSRLLGAIDGVVPQGG 277 (384)
T ss_dssp CHHHHHHHHHHTBTTCCTTCSSCCCCSCCCBCBCBHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHHTSTTCEECCC
T ss_pred HHHHHHHHHHhcCCCCccccccccccccccccccccchhhhhhhhhhhcc--cchhhhhhhhhhhhhhhhcccccccccc
Confidence 4544332 11100 0 01124445567888888888776553 35666677888888888765221 000
Q ss_pred e--eeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEee
Q psy8199 575 I--NFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRP 616 (965)
Q Consensus 575 ~--~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~ 616 (965)
. .......++.+.+. . ......+.+.+.|.++||-+++
T Consensus 278 ~~~~~~~~~~~~~~~~~--~--~~~~~Rd~l~~~L~~~GI~~~~ 317 (384)
T d1b9ha_ 278 DVRADRNSHYMAMFRIP--G--LTEERRNALVDRLVEAGLPAFA 317 (384)
T ss_dssp CTTCCBCCCSEEEEECT--T--CCHHHHHHHHHHHHHTTCCEEE
T ss_pred cccccccccccccceec--c--cccccHHHHHHHHHHCCCCeee
Confidence 0 11111223333332 1 1122345688999999997653
|
| >d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Subgroup IV putative aspartate aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=99.07 E-value=2.1e-09 Score=115.70 Aligned_cols=315 Identities=13% Similarity=0.022 Sum_probs=173.4
Q ss_pred CHHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEE
Q psy8199 272 NSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFIC 351 (965)
Q Consensus 272 ~p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~ 351 (965)
+|+|.+|+.++. .+ +.+....+...+..+.|.++++.+.+-++|+.|||+|++.++.-... +++++++
T Consensus 12 ~~~V~~am~~~~--~~--hr~~~f~~i~~~~~~~l~~ll~~~~~~i~~~gsgT~a~e~~~~nl~~--------~g~~vlv 79 (348)
T d1iuga_ 12 HPKALEALARPQ--LH--HRTEAAREVFLKARGLLREAFRTEGEVLILTGSGTLAMEALVKNLFA--------PGERVLV 79 (348)
T ss_dssp CHHHHHHHHSCC--CC--TTSHHHHHHHHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHHHHHCC--------TTCEEEE
T ss_pred CHHHHHHhcCCC--CC--CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeCchHHHHHHHHHhccc--------cccccee
Confidence 677877765432 11 11112234456677777788775556788899999999999876532 4567777
Q ss_pred EcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEcccc
Q psy8199 352 LQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLV 431 (965)
Q Consensus 352 ~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v 431 (965)
+..++.|....... ......+.....+..... ++++ +.. .++..|.+-- .
T Consensus 80 ~~~G~f~~~~~~~a-----------~~~~~~~~~~~~~~g~~~------------~~~~----~~~--~~~~~v~~~h-~ 129 (348)
T d1iuga_ 80 PVYGKFSERFYEIA-----------LEAGLVVERLDYPYGDTP------------RPED----VAK--EGYAGLLLVH-S 129 (348)
T ss_dssp EECSHHHHHHHHHH-----------HHTTCEEEEEECCTTCCC------------CTTT----SCC--SSCSEEEEES-E
T ss_pred ecchHHHHHHHHHH-----------HhcCcccccccccCCCcc------------cccc----ccc--cCCCeeEEEe-c
Confidence 77665453211111 111112233333221110 0111 111 1222233322 3
Q ss_pred ccCCCcccCChHHHHHHHHHHHhcC--CeEEEeccccCCCcccccccccccCCCcceeeec--cccCCCcccceeeeecH
Q psy8199 432 QCAGGMIMYDSIYLKLVREICNNYN--IHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS--KGITGGYLPLSLVMTTD 507 (965)
Q Consensus 432 ~~~~G~~~~~~~~l~~l~~l~~~~g--~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~s--K~l~gG~~pig~v~~~~ 507 (965)
.+++|.+.| +++|.++|++|+ +++++|-+++ +|-. ....+.++ .|++++| |+++|- -.+|.++.++
T Consensus 130 eTstG~~~~----i~~i~~~~~~~~~~~l~~vDavss-~g~~--~i~~d~~~--iD~~~~~sqK~l~gp-pG~~~v~~s~ 199 (348)
T d1iuga_ 130 ETSTGALAD----LPALARAFKEKNPEGLVGADMVTS-LLVG--EVALEAMG--VDAAASGSQKGLMCP-PGLGFVALSP 199 (348)
T ss_dssp ETTTTEECC----HHHHHHHHHHHCTTCEEEEECTTT-BTTB--CCCSGGGT--CSEEEEESSSTTCCC-SCEEEEEECH
T ss_pred chhhhhhcc----HHHHHHHHHhhhccceeechhhhc-cccc--cccccccc--CCEEEeccccceecC-Cceeeeeech
Confidence 456788888 889999999985 7899999986 5421 23344444 6888775 888773 3578888999
Q ss_pred HHHHhhhccCCc-------ccccccCC-CCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcccCCCcee---e
Q psy8199 508 KIYNSIYYKNNI-------NIFLHSHS-YSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKII---N 576 (965)
Q Consensus 508 ~i~~~~~~~~~~-------~~~~~~~t-~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~i~---~ 576 (965)
+.++.+...... .....+.+ ++.+...+.+..++|+.+.+. ..++.+ ..+...+.+.++....++. .
T Consensus 200 ~~le~~~~~~~~~dl~~~~~~~~~~~~~~Tp~v~~i~~l~~aL~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~gl~~~~~ 277 (348)
T d1iuga_ 200 RALERLKPRGYYLDLARELKAQKEGESAWTPAINLVLAVAAVLEEVLPR-LEEHLA-LKAWQNALLYGVGEEGGLRPVPK 277 (348)
T ss_dssp HHHHTCCCCSSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHGGG-HHHHHH-HHHHHHHHHHHHHHHTTCEESCS
T ss_pred HHHhhhcccccccchhhhhhhhccCcccccccchHHHHHHHHHHHHHHH-HhHHHH-HHHHHHHHHhhhhhhhhhccChh
Confidence 887755321000 00011222 334445677777888876543 333322 2222222232221111222 1
Q ss_pred eeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeec-----CCEEEEeCCcccCHHHHHHHHHhhhccccc
Q psy8199 577 FRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-----GNTVYLMPPYILNKNEIQHMTSAIFQTFNE 647 (965)
Q Consensus 577 v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-----~~~lR~~p~~~~t~~~i~~~~~~l~~~~~~ 647 (965)
-++.+ +.++.+. ++- ....+.+.|.++|+.+.++ +..+||.--=..+.++++.+++.+++++.+
T Consensus 278 ~~s~~-v~~~~~P--~g~----~~~~~~~~l~~~gi~i~~G~~~l~~~~~RIg~mG~~~~~d~~~~~~~l~~~l~~ 346 (348)
T d1iuga_ 278 RFSPA-VAAFYLP--EGV----PYARVKEAFAQRGAVIAGGQGPLKGKVFRLSLMGAYDRYEALGVAGMFREVLEE 346 (348)
T ss_dssp SBCTT-CEEEECC--TTC----CHHHHHHHHHTTTEECEECCGGGTTTEEEECCCSSCCHHHHHHHHHHHHHHHHH
T ss_pred hcCCe-EEEEECC--CCC----CHHHHHHHHHHCCeEEEcCccccCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 12222 3445543 211 1346778899999988764 358999833367889999998888766543
|
| >d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase homolog WlaK (PglE, Cj1121c) species: Campylobacter jejuni [TaxId: 197]
Probab=98.96 E-value=1.4e-07 Score=102.77 Aligned_cols=239 Identities=14% Similarity=0.141 Sum_probs=142.2
Q ss_pred HHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCC
Q psy8199 276 NKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNS 355 (965)
Q Consensus 276 ~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~ 355 (965)
++++.+.++.. +.+ ..-+...++++.+++.+ +...+++++|||.|+.+|++++. -.++++|++..-+
T Consensus 4 ~~~~~~~l~~~-~~~---~~G~~~~~fE~~~~~~~--~~~~~~~~~SgT~Al~lal~~l~-------~~~gdeVi~p~~t 70 (374)
T d1o69a_ 4 LKYIEEVFKSN-YIA---PLGEFVNRFEQSVKDYS--KSENALALNSATAALHLALRVAG-------VKQDDIVLASSFT 70 (374)
T ss_dssp HHHHHHHHHHT-TTS---CTTHHHHHHHHHHHHHH--CCSEEEEESCHHHHHHHHHHHTT-------CCTTCEEEEESSS
T ss_pred HHHHHHHHhcC-CcC---CCCHHHHHHHHHHHHHH--CcCeEEEeCCHHHHHHHHHHHcC-------CCCcCEEEeCCcc
Confidence 46777777764 221 11356788999999999 56799999999999999998652 2467889998766
Q ss_pred ccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCC
Q psy8199 356 YHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAG 435 (965)
Q Consensus 356 yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~ 435 (965)
|.........++. ..+++......... +.+..+ .......++.+|++-. ..
T Consensus 71 ~~a~~~~~~~~g~-------------~pv~~Di~~~~~~~-----------~~~~~~-~~~~~~~~~~aii~~~----~~ 121 (374)
T d1o69a_ 71 FIASVAPICYLKA-------------KPVFIDCDETYNID-----------VDLLKL-AIKECEKKPKALILTH----LY 121 (374)
T ss_dssp CGGGTHHHHHTTC-------------EEEEECBCTTSSBC-----------HHHHHH-HHHHCSSCCCEEEEEC----GG
T ss_pred hHhhHHHHhhccc-------------eeEecccccccccc-----------cccccc-cchhcccccccccccc----cc
Confidence 6544333333222 22333222111111 222222 2222234455555422 23
Q ss_pred CcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcceeeec----cccCCCcccceeeee-cHHHH
Q psy8199 436 GMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS----KGITGGYLPLSLVMT-TDKIY 510 (965)
Q Consensus 436 G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~s----K~l~gG~~pig~v~~-~~~i~ 510 (965)
|.... +.++.++|+++|++||-|-+|+ ||-. +.-...|-.-|+.+|| |.++.|. -|+++. +++++
T Consensus 122 G~~~d----~~~i~~~~~~~~i~vIED~a~a-~g~~---~~~~~~G~~gd~~~fSf~~~K~l~tge--GG~i~tnn~~~~ 191 (374)
T d1o69a_ 122 GNAAK----MDEIVEICKENDIVLIEDAAEA-LGSF---YKNKALGTFGEFGVYSYNGNKIITTSG--GGMLIGKNKEKI 191 (374)
T ss_dssp GCCCC----HHHHHHHHHHTTCEEEEECTTC-TTCE---ETTEETTSSSSEEEEECCTTSSSCCSS--CEEEEESCHHHH
T ss_pred cchhh----hHHHHHHhhccCcchhhhhhhh-hcce---ECCeecCCCCceEEEeccCcccccccc--ceeehhhhHHHH
Confidence 44444 8899999999999999999997 5421 1112233345877764 8775442 255555 46666
Q ss_pred Hhhhc---cCCcc-----cccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcc
Q psy8199 511 NSIYY---KNNIN-----IFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSL 568 (965)
Q Consensus 511 ~~~~~---~~~~~-----~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l 568 (965)
+.+.. .+... ....|..+..+.+.+|.+++-|+.+. .+.++-++..+++.+.|...
T Consensus 192 ~~~~~~~~~g~~~~~~~~~~~~G~N~rm~ei~Aaig~~qL~~l~--~~i~~r~~i~~~y~~~L~~~ 255 (374)
T d1o69a_ 192 EKARFYSTQARENCLHYEHLDYGYNYRLSNVLGAIGVAQMEVLE--QRVLKKREIYEWYKEFLGEY 255 (374)
T ss_dssp HHHHHHTBTCCCSSSSCCCSSCCCBCBCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHTTT
T ss_pred HhhccccccccccccccccccCCccccccchhhhhhHHHHhhhh--hhcchhHHHHHHHHhhcccc
Confidence 55532 11111 11234556678888888888887553 35666667778888888664
|
| >d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL2 [TaxId: 5722]
Probab=98.96 E-value=6.8e-09 Score=109.49 Aligned_cols=233 Identities=14% Similarity=0.112 Sum_probs=148.2
Q ss_pred HHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccC
Q psy8199 301 KLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLL 380 (965)
Q Consensus 301 ~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~ 380 (965)
.|+++++++- +.+.++.++||..|+..++....+ .+++||+.+..|.|..... ......+.
T Consensus 2 aLE~~la~Le--g~~~a~~~sSGMaAi~~~l~~ll~--------~Gd~iv~~~~~Yg~t~~~~---------~~~l~~~g 62 (331)
T d1pffa_ 2 ALEGKIAKLE--HAEACAATASGMGAIAASVWTFLK--------AGDHLISDDCLYGCTHALF---------EHQLRKFG 62 (331)
T ss_dssp HHHHHHHHHH--TCSEEEEESSHHHHHHHHHHHHCC--------TTCEEEEESCCCHHHHHHH---------HTHHHHTT
T ss_pred HHHHHHHHHh--CCCeEEEECCHHHHHHHHHHHHhC--------CCCEEEEeCCCchHHHHHH---------HHHHHhcC
Confidence 4778899887 457888889999999988865543 5688999999997752111 11122223
Q ss_pred CCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHH-HhcCCeE
Q psy8199 381 NKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREIC-NNYNIHL 459 (965)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~-~~~g~ll 459 (965)
.++.++.. .|.+.+++++ .+++..|++|. +.|+...++. ++.+.+++ +++|+++
T Consensus 63 i~~~~~d~-----------------~d~~~~~~~i---~~~t~~i~~Es-~~np~~~v~d----~~~~~~~~a~~~~~~~ 117 (331)
T d1pffa_ 63 VEVDFIDM-----------------AVPGNIEKHL---KPNTRIVYFET-PANPTLKVID----IEDAVKQARKQKDILV 117 (331)
T ss_dssp CEEEEECT-----------------TSTTHHHHTC---CTTEEEEEEES-SCTTTCCCCC----HHHHHHHHTTSSSCEE
T ss_pred eEEEEecc-----------------cchhhHhhhc---ccccceeeeec-cccccccccc----chhhhhhhhcccCceE
Confidence 34445433 2556677666 45789999999 7888877776 77777774 6789999
Q ss_pred EEeccccCCCcccccccccccCCCcceee--eccccCC-CcccceeeeecHHHHHhhhccCCcccccccCCCCCCHHHHH
Q psy8199 460 IADEIAVGCGRTGKFFACEHAEIWPDFLC--LSKGITG-GYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACC 536 (965)
Q Consensus 460 I~DEv~tg~gr~G~~~~~~~~~~~pDivt--~sK~l~g-G~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~a 536 (965)
|+|..... +..+.-+....|+++ ..|-++| |-.-.|+++++++.+...... .+.....-..+|..+.
T Consensus 118 vVDnT~at------p~~~~pl~~GaDiVv~S~TKy~~Gh~d~~~G~v~~~~~~~~~~~~~----~~~~~~G~~l~p~~a~ 187 (331)
T d1pffa_ 118 IVDNTFAS------PILTNPLDLGVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQ----GIKDITGAIISPHDAW 187 (331)
T ss_dssp EEECTTTH------HHHCCGGGGTCSEEEEETTTTTSSSSSCCCEEEEECHHHHHHHHHT----CCCCCCCCCCCHHHHH
T ss_pred Eeeccccc------cccccccccCCCEEEecchhhcCCCCccccccccccccchhhhhhh----hhhhccCCCCCHHHHH
Confidence 99987542 223333444578885 6798877 334456777776655443321 0111112234688888
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHHcccC-----CCcee----------eeeceeEEEEEEEe
Q psy8199 537 AALATLEIFNKDNILQRISQDMKKITKALTSLIT-----HPKII----------NFRQKGMIWAFDVI 589 (965)
Q Consensus 537 aa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~~-----~~~i~----------~v~g~G~~~~i~~~ 589 (965)
..+..|+.+.- ..++..++...+.+.|++-.. +|++. ...+-|.+++|++.
T Consensus 188 ll~rgl~Tl~~--Rm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~~~g~l~sf~l~ 253 (331)
T d1pffa_ 188 LITRGTLTLDM--RVKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVD 253 (331)
T ss_dssp HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHCTTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECS
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHhhhhCCcEEeeccccccCccHHHHHhhcccccCcccceeec
Confidence 88888876642 255556667777777765321 23321 13456888888875
|
| >d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Escherichia coli [TaxId: 562]
Probab=98.95 E-value=8.4e-09 Score=111.01 Aligned_cols=242 Identities=11% Similarity=0.094 Sum_probs=153.5
Q ss_pred ccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCC
Q psy8199 290 MLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNI 369 (965)
Q Consensus 290 ~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~ 369 (965)
.+++..++....|+++++++- +.+.++.++||..|+.+++.... ..+++||+.+..|-|.... +
T Consensus 51 ~Y~R~~nPt~~~le~~la~LE--g~~~a~~~~SGMaAi~~~l~~l~--------~~Gd~iv~~~~~Yg~T~~l-~----- 114 (391)
T d1cl1a_ 51 FYGRRGTLTHFSLQQAMCELE--GGAGCVLFPCGAAAVANSILAFI--------EQGDHVLMTNTAYEPSQDF-C----- 114 (391)
T ss_dssp CCTTTCCHHHHHHHHHHHHHH--TCSEEEEESSHHHHHHHHHHHHC--------CTTCEEEEETTSCHHHHHH-H-----
T ss_pred EeECCCChhHHHHHHHHHHHh--CCccEEEeccccceeeehhhccc--------CCCCeEEEecccccchhhh-h-----
Confidence 346678999999999999998 45789999999999999987653 3678899988887554211 1
Q ss_pred cCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHH
Q psy8199 370 QSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVR 449 (965)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~ 449 (965)
...+......+.++.. .|.+++++++ .+++.+|++|. +.|++..+.+ +++++
T Consensus 115 ---~~~l~~~Gi~~~~~d~-----------------~d~~~~~~~i---~~~t~~i~~Et-psNP~l~v~D----i~~i~ 166 (391)
T d1cl1a_ 115 ---SKILSKLGVTTSWFDP-----------------LIGADIVKHL---QPNTKIVFLES-PGSITMEVHD----VPAIV 166 (391)
T ss_dssp ---HHTGGGGTCEEEEECT-----------------TCGGGGGGTC---CTTEEEEEEES-SCTTTCCCCC----HHHHH
T ss_pred ---hhcccccccccccccC-----------------cccccccccc---ccccceeeecc-cCcccccccc----cHHHH
Confidence 1111222223333322 2445566554 46789999999 8888877776 88999
Q ss_pred HHHHhc--CCeEEEeccccCCCcccccccccccCCCcceee--eccccCC-CcccceeeeecHHHHHhhhccCCcccccc
Q psy8199 450 EICNNY--NIHLIADEIAVGCGRTGKFFACEHAEIWPDFLC--LSKGITG-GYLPLSLVMTTDKIYNSIYYKNNINIFLH 524 (965)
Q Consensus 450 ~l~~~~--g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt--~sK~l~g-G~~pig~v~~~~~i~~~~~~~~~~~~~~~ 524 (965)
++|+++ |+++|+|...... ..+.-+....|+++ .+|-++| +=.-.|+++.+++..+.+... ....
T Consensus 167 ~~a~~~~~g~~~vVDnT~atP------~~~~Pl~~GaDivvhS~TKy~~GhsdvlgG~vv~~~~~~~~~~~~----~~~~ 236 (391)
T d1cl1a_ 167 AAVRSVVPDAIIMIDNTWAAG------VLFKALDFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLREN----AYLM 236 (391)
T ss_dssp HHHHHHCTTCEEEEECTTTTT------TSSCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHH----HHHT
T ss_pred HHHHhccCCcEEEEeccccch------hhhcccccccceEEeecchhccccccccccceeccccccccchhh----hhcc
Confidence 999775 9999999976422 22333344568875 6788877 323446677777766655431 1122
Q ss_pred cCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHccc-----CCCcee----------eeeceeEEEEEEEe
Q psy8199 525 SHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLI-----THPKII----------NFRQKGMIWAFDVI 589 (965)
Q Consensus 525 ~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~-----~~~~i~----------~v~g~G~~~~i~~~ 589 (965)
|.+ .+|..+...+..|+.+.- -.++..++...+.+.|++-. .+|+.. ...|.|.+++|.+.
T Consensus 237 G~~--~~p~~a~ll~rgl~TL~l--R~~~~~~nA~~vA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~ 312 (391)
T d1cl1a_ 237 GQM--VDADTAYITSRGLRTLGV--RLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLK 312 (391)
T ss_dssp TCC--CCHHHHHHHHHHHTTHHH--HHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEES
T ss_pred ccc--CCchhhhhhhccchhHHH--HHHHHHHHHHHHHHHHHhcccccccccccccchhhHHHHhhccCCCCcceeeeec
Confidence 333 367777766666654432 24555666667777775431 122211 13455667788875
|
| >d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL1 [TaxId: 5722]
Probab=98.91 E-value=3.5e-08 Score=106.20 Aligned_cols=244 Identities=16% Similarity=0.133 Sum_probs=154.0
Q ss_pred ccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCC
Q psy8199 290 MLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNI 369 (965)
Q Consensus 290 ~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~ 369 (965)
.+++..++....|+++|+++- +.+..+.++||..|+..++.... .++++|++.+..|.|.....
T Consensus 52 ~YsR~~nPT~~~le~~la~LE--g~~~a~~~sSGmaAi~~~~l~l~--------~~gd~vv~~~~~yg~t~~~~------ 115 (394)
T d1e5ea_ 52 IYTRLGNPTVSNLEGKIAFLE--KTEACVATSSGMGAIAATVLTIL--------KAGDHLISDECLYGCTHALF------ 115 (394)
T ss_dssp CBTTTCCHHHHHHHHHHHHHH--TCSEEEEESSHHHHHHHHHHHHC--------CTTCEEEEESCCCHHHHHHH------
T ss_pred eecCCCCHHHHHHHHHHHHHh--CCcceeeeccchHHHHHHHHhhc--------ccccccccccceeehhhHhH------
Confidence 346678999999999999998 46788888999999998876553 36788888887775542111
Q ss_pred cCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHH
Q psy8199 370 QSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVR 449 (965)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~ 449 (965)
...+......+.++.. .|.++++++++ +++.+|++|. +.|++..+.. ++++.
T Consensus 116 ---~~~~~~~gi~~~~~d~-----------------~d~~~~~~~i~---~~t~lv~~Et-p~NP~l~v~D----i~~~~ 167 (394)
T d1e5ea_ 116 ---EHALTKFGIQVDFINT-----------------AIPGEVKKHMK---PNTKIVYFET-PANPTLKIID----MERVC 167 (394)
T ss_dssp ---HTHHHHTTCEEEEECT-----------------TSTTHHHHHCC---TTEEEEEEES-SCTTTCCCCC----HHHHH
T ss_pred ---HHHhhccceeeeccCC-----------------CCHHHHHHhhc---ccccEEEEec-cCCcceeeeh----hhhhh
Confidence 1112222333444433 25567777774 5789999999 8888887776 77777
Q ss_pred HHHH-hcCCeEEEeccccCCCcccccccccccCCCcceee--eccccCC-CcccceeeeecHHHHHhhhccCCccccccc
Q psy8199 450 EICN-NYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLC--LSKGITG-GYLPLSLVMTTDKIYNSIYYKNNINIFLHS 525 (965)
Q Consensus 450 ~l~~-~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt--~sK~l~g-G~~pig~v~~~~~i~~~~~~~~~~~~~~~~ 525 (965)
+.++ ++|+++|+|...... ..++-+....|+++ .+|-++| +=.-.|+++++++.+...+... +...
T Consensus 168 ~~~~~~~g~~vvvDnT~atP------~~~~Pl~~GaDiVvhS~TKy~~GhsDv~~G~v~~~~~~~~~~~~~~----~~~~ 237 (394)
T d1e5ea_ 168 KDAHSQEGVLVIADNTFCSP------MITNPVDFGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVG----IKDI 237 (394)
T ss_dssp HHHHTSTTCEEEEECTTTCT------TTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTC----CCCC
T ss_pred hccccccCeEEEecCcccCc------ccCCchhcCCCEEEechhhhcCCCcccccccccchhhHHHHHHHHH----HHHh
Confidence 7555 578999999876422 22333344568885 6798877 3234567778877665543210 1111
Q ss_pred CCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHccc-----CCCceee----------eeceeEEEEEEEe
Q psy8199 526 HSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLI-----THPKIIN----------FRQKGMIWAFDVI 589 (965)
Q Consensus 526 ~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~-----~~~~i~~----------v~g~G~~~~i~~~ 589 (965)
..-..+|..+...+..|+.+.- -.++..++...+.+.|++-. .+|++.. .++-|.++.|++.
T Consensus 238 ~G~~lsp~~a~ll~rgl~TL~l--Rm~r~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~~~G~~~sf~~~ 314 (394)
T d1e5ea_ 238 TGSVISPHDAWLITRGLSTLNI--RMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILK 314 (394)
T ss_dssp CCCCCCHHHHHHHHHHHTTHHH--HHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEET
T ss_pred hCCCCChHHHHHHHhhchhHHH--HHHHHHHHHHHHHHHHhhcCCccEEeCCCcccccchhhhhcccccCCCeeeeecc
Confidence 1122467777777777765432 24555666777777776431 1333221 2345888888775
|
| >d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-lyase (CYS3) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.90 E-value=4.6e-08 Score=105.05 Aligned_cols=216 Identities=14% Similarity=0.160 Sum_probs=137.5
Q ss_pred cCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCc
Q psy8199 291 LSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQ 370 (965)
Q Consensus 291 ~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~ 370 (965)
+++..++....|+++|+++- +-+.++.++||..|+..++.+. ..+++||+.+..|.|........
T Consensus 49 YsR~gnPT~~~lE~~la~LE--~~~~a~~~sSGmaAi~~~l~~l---------~~gd~iv~~~~~yg~t~~~~~~~---- 113 (393)
T d1n8pa_ 49 YSRSQNPNRENLERAVAALE--NAQYGLAFSSGSATTATILQSL---------PQGSHAVSIGDVYGGTHRYFTKV---- 113 (393)
T ss_dssp BTTTCCHHHHHHHHHHHHHT--TCSEEEEESCHHHHHHHHHHTS---------CSSCEEEEESSCCHHHHHHHHHT----
T ss_pred eeCCCChHHHHHHHHHHHHh--CCceEEEecCchhHHHhhhhcc---------cCCCeeeeeeeecccchhhhhhh----
Confidence 35677889999999999997 4578888999988875444322 35678999999997753221111
Q ss_pred CccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHH
Q psy8199 371 SFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVRE 450 (965)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~ 450 (965)
+..+...+.++.. +.++++++++ +++.+|++|. +.|+...++. +++|.+
T Consensus 114 -----l~~~gi~~~~~~~------------------~~~~~~~~i~---~~t~lv~~Es-psNP~l~v~D----i~~ia~ 162 (393)
T d1n8pa_ 114 -----ANAHGVETSFTND------------------LLNDLPQLIK---ENTKLVWIET-PTNPTLKVTD----IQKVAD 162 (393)
T ss_dssp -----STTTCSCCEEESS------------------HHHHHHHHSC---SSEEEEEECS-SCTTTCCCCC----HHHHHH
T ss_pred -----hhcccceeEEeec------------------chHHHHHHhh---hhcceeEecC-cchhhhhccc----hhhhhh
Confidence 1111222333321 3467777764 6789999999 8888887776 888888
Q ss_pred HHH----hcCCeEEEeccccCCCcccccccccccCCCcceee--eccccCC-Ccccceeeeec-HHHHHhhhccCCcccc
Q psy8199 451 ICN----NYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLC--LSKGITG-GYLPLSLVMTT-DKIYNSIYYKNNINIF 522 (965)
Q Consensus 451 l~~----~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt--~sK~l~g-G~~pig~v~~~-~~i~~~~~~~~~~~~~ 522 (965)
+|+ ++|+++|+|..... +..+.-+....|+++ ..|-++| +=.-.|+++.+ +++.+.+..- + .
T Consensus 163 ~a~~~~~~~g~~lvVDnT~at------P~~~~Pl~~GADiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~l~~~---~-~ 232 (393)
T d1n8pa_ 163 LIKKHAAGQDVILVVDNTFLS------PYISNPLNFGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFL---Q-N 232 (393)
T ss_dssp HHHHHTTTTTCEEEEECTTTH------HHHCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHH---H-H
T ss_pred hhhhhcccCCceEEEecCccC------cccCCchhhCCCEEEEccccccCCCCccccceeeecchhHHHHHHHH---H-h
Confidence 888 78999999987532 223333344568885 6798877 32344555544 5566655431 0 1
Q ss_pred cccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Q psy8199 523 LHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALT 566 (965)
Q Consensus 523 ~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~ 566 (965)
..|. ..+|..+..++..|+.+.- ..++..++...+.+.|+
T Consensus 233 ~~G~--~~~p~~a~ll~rgl~Tl~l--R~~~~~~nA~~lA~~L~ 272 (393)
T d1n8pa_ 233 AIGA--IPSPFDAWLTHRGLKTLHL--RVRQAALSANKIAEFLA 272 (393)
T ss_dssp HHCC--CCCHHHHHHHHHHHTTHHH--HHHHHHHHHHHHHHHHT
T ss_pred hcCC--CCChHHHHHHHhCCcchhh--HHHHHHHHHHHHHHHHH
Confidence 1222 3468888877777765532 24445556666666664
|
| >d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Spore coat polysaccharide biosynthesis protein C species: Helicobacter pylori [TaxId: 210]
Probab=98.88 E-value=4.2e-08 Score=106.72 Aligned_cols=281 Identities=14% Similarity=0.143 Sum_probs=162.1
Q ss_pred HHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEE
Q psy8199 273 SYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICL 352 (965)
Q Consensus 273 p~v~~av~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~ 352 (965)
.+-.+++.+.++... ++ .-+...++++++++.+ +.+++++++|||.|+.+|++.... +...++.||+.
T Consensus 12 ~~~~~~v~~~l~~~~-~~----~G~~v~~fE~~~~~~~--g~k~ai~~~Sgt~Al~~al~al~~-----~~~~~~eVi~p 79 (371)
T d2fnua1 12 KEDKKAVLEVLNSKQ-LT----QGKRSLLFEEALCEFL--GVKHALVFNSATSALLTLYRNFSE-----FSADRNEIITT 79 (371)
T ss_dssp HHHHHHHHHHHTSSC-CS----SSHHHHHHHHHHHHHH--TCSEEEEESCHHHHHHHHHHHSSC-----CCTTSCEEEEC
T ss_pred HHHHHHHHHHHcCCC-cc----CCHHHHHHHHHHHHHH--CcCeEEEEecHHHHHHHHHHHhcc-----cCCCCCeeecc
Confidence 455678888887642 21 2467889999999999 567999999999999999986522 11124578887
Q ss_pred cCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccc
Q psy8199 353 QNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQ 432 (965)
Q Consensus 353 ~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~ 432 (965)
.-+|.......+..+.. .+++....... .+.+++++.+ ..++.+|++-
T Consensus 80 ~~t~~a~~~ai~~~G~~-------------pv~vDi~~~~~------------~~~~~~~~~~---~~~t~avi~v---- 127 (371)
T d2fnua1 80 PISFVATANMLLESGYT-------------PVFAGIKNDGN------------IDELALEKLI---NERTKAIVSV---- 127 (371)
T ss_dssp SSSCTHHHHHHHHTTCE-------------EEECCBCTTSS------------BCGGGSGGGC---CTTEEEEEEE----
T ss_pred cccccccceeeeccCcc-------------ccccccccccc------------ccchhhhhhc---cchhhccccc----
Confidence 66655443222232221 12222111111 1123334333 4567776653
Q ss_pred cCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcceeeec----cccCCCcccceeeeec-H
Q psy8199 433 CAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS----KGITGGYLPLSLVMTT-D 507 (965)
Q Consensus 433 ~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~s----K~l~gG~~pig~v~~~-~ 507 (965)
+..|...+ +.++.++|+++|+.+|-|-+|+ +|- .+.-...|-.-|+.+|| |.++.|. -|+++.+ +
T Consensus 128 h~~G~~~~----~~~i~~~~~~~~i~lIEDaaqa-~Ga---~~~~~~~G~~g~~~~~Sf~~~K~l~~g~--GG~i~t~~~ 197 (371)
T d2fnua1 128 DYAGKSVE----VESVQKLCKKHSLSFLSDSSHA-LGS---EYQNKKVGGFALASVFSFHAIKPITTAE--GGAVVTNDS 197 (371)
T ss_dssp CGGGCCCC----HHHHHHHHHHHTCEEEEECTTC-TTC---EETTEETTSSSSEEEEECCTTSSSCCSS--CEEEEESCH
T ss_pred cccccccc----cccccccccccchhhccchhhc-cCc---eeccccCCcccccccccccccccccccc--ceEEEeech
Confidence 23455555 8899999999999999999997 542 12222334445666654 7776542 3566664 4
Q ss_pred HHHHhhhcc---CCc-------ccccccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcccCCCceeee
Q psy8199 508 KIYNSIYYK---NNI-------NIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINF 577 (965)
Q Consensus 508 ~i~~~~~~~---~~~-------~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v 577 (965)
++.+.+..- +.. .....|..+..+.+.++.++.-|+.+. ...++-+++..++.+.|.+. +.+...
T Consensus 198 ~~~~~~~~~~~~g~~~~~~~~~~~~~~G~n~r~sel~Aaigl~qL~~l~--~~~~~R~~~~~~y~~~l~~~---~~~~~~ 272 (371)
T d2fnua1 198 ELHEKMKLFRSHGMLKKDFFEGEVKSIGHNFRLNEIQSALGLSQLKKAP--FLMQKREEAALTYDRIFKDN---PYFTPL 272 (371)
T ss_dssp HHHHHHHHHTBTTEEESSSSCEEESSCCCBCCCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHTTC---SSEEES
T ss_pred hhhhhcccccccccccccccccccccccccccccchhhhhhhhhhhhcc--chhhhhhhhhhhhccccccc---cccccc
Confidence 565555331 100 011124556677888888888886553 34566566677777777654 332211
Q ss_pred ------eceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEee
Q psy8199 578 ------RQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRP 616 (965)
Q Consensus 578 ------~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~ 616 (965)
......+.+.+. +. .....+.+.+.|.++||-+++
T Consensus 273 ~~~~~~~~~~~~~~i~~~--~~--~~~~r~~~~~~L~~~gI~~~~ 313 (371)
T d2fnua1 273 HPLLKDKSSNHLYPILMH--QK--FFTCKKLILESLHKRGILAQV 313 (371)
T ss_dssp GGGCSSCCCCSCEEEEEC--GG--GGGGHHHHHHHHHHTTEECBC
T ss_pred cccccccccccccccccc--cc--chhHHHHHHHHHHHCCCCcce
Confidence 111122333332 11 112245688899999997653
|
| >d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]
Probab=98.87 E-value=3.3e-09 Score=115.44 Aligned_cols=316 Identities=10% Similarity=0.026 Sum_probs=156.2
Q ss_pred CHHHHHHHHHHHhhcccc--------ccCCCCcHHHHHHHHHHHhhcCCCCC-eEEEcCChhHHHHHHHHHHHHHHHhcC
Q psy8199 272 NSYINKALKNQLNKLEHV--------MLSNLTHKPVIKLSEKLSSLTQYKLG-HCFYGSDGASAVEVALKMSFHYWYNKG 342 (965)
Q Consensus 272 ~p~v~~av~~~~~~~~~~--------~~~~~~~~~~~~la~~l~~~~~~~~~-~v~~~~sGseA~~~Al~~a~~~~~~~g 342 (965)
+++|++||.+++...... +.+.-..+...+..+.|+++++...+ .++|++|+++++..|+.....
T Consensus 15 p~~V~eam~~~~~~~~~~~~~~~~~sHRs~ef~~~~~~~r~~l~~l~~~~~~~~i~~~~gs~t~~~ea~~~~l~------ 88 (361)
T d2c0ra1 15 PLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPTGYKVLFIQGGASTQFAMIPMNFL------ 88 (361)
T ss_dssp CHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCCSSEEEEEESSHHHHHHHHHHHHHC------
T ss_pred CHHHHHHHHHHHhhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHhccc------
Confidence 688999998876442110 11111234456777888888875333 788877776666555433221
Q ss_pred CCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcE
Q psy8199 343 FLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKI 422 (965)
Q Consensus 343 ~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~ 422 (965)
.++++++....+..+.....+. ......+.....+.... .+++++++.+. ....
T Consensus 89 -~~~~~~l~~~~g~~~~~~~~~~-----------~~~g~~~~~~~~~~~~~------------~~~~~~~~~~~--~~~~ 142 (361)
T d2c0ra1 89 -KEGQTANYVMTGSWASKALKEA-----------KLIGDTHVAASSEASNY------------MTLPKLQEIQL--QDNA 142 (361)
T ss_dssp -CTTCEEEEEECSHHHHHHHHHH-----------HHHSCEEEEEECGGGTT------------CSCCCGGGCCC--CTTE
T ss_pred -cCCCceEEEeechhhhhhhhhh-----------hhcCceeeeeccccccc------------cchhhhhhhcc--cCcc
Confidence 2456666665443332111111 11111122222211100 12233333332 2233
Q ss_pred EEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcceeeeccccCCCccccee
Q psy8199 423 AAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSL 502 (965)
Q Consensus 423 aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~sK~l~gG~~pig~ 502 (965)
..+. +.+|...+ ++++.++|+++|+++++|-|++ +|. .....+ ....|+.+.+|.++.+ |.++
T Consensus 143 ~~v~------~~tg~~~~----~~~i~~~~~~~~al~~vDavss-~g~--~~id~~--~~di~~~s~~k~~~~~--~~~~ 205 (361)
T d2c0ra1 143 AYLH------LTSNETIE----GAQFKAFPDTGSVPLIGDMSSD-ILS--RPFDLN--QFGLVYAGAQKNLGPS--GVTV 205 (361)
T ss_dssp EEEE------EESEETTT----TEECSSCCCCTTSCEEEECTTT-TTS--SCCCGG--GCSEEEEETTTTTCCS--SCEE
T ss_pred eEEE------Eeccccee----cceEEEeeccCCceEEEEeecc-ccc--cccccc--cceeEEEecccccccc--cCcE
Confidence 3322 23455555 4457889999999999999996 542 222333 3445777888887653 3444
Q ss_pred eeec-HHHHHhhhccCCcc-----cccccCCCCCCHHHHHHHHHHHHHHhccc----HHHHHHHHHHHHHHHHHcccCC-
Q psy8199 503 VMTT-DKIYNSIYYKNNIN-----IFLHSHSYSGNPLACCAALATLEIFNKDN----ILQRISQDMKKITKALTSLITH- 571 (965)
Q Consensus 503 v~~~-~~i~~~~~~~~~~~-----~~~~~~t~~~~~~~~aaa~a~L~~~~~~~----~~~~~~~~~~~l~~~L~~l~~~- 571 (965)
++.. +.+...-....... ..........++.....+..++....... ...+.+.....+..........
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (361)
T d2c0ra1 206 VIVREDLVAESPKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSGGFY 285 (361)
T ss_dssp EEEEGGGSSSCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSS
T ss_pred EEEEhHHhhhCccccccccccccccccccccccccceeeehhhhHHHhhhhccchHHHHHHHHHHHHHhhhhhhhccccc
Confidence 4433 32222111000000 00112222334444444444444333222 2222333333333333322111
Q ss_pred Cc--eeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecC---CEEEEeCCcccCHHHHHHHHHhhhc
Q psy8199 572 PK--IINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG---NTVYLMPPYILNKNEIQHMTSAIFQ 643 (965)
Q Consensus 572 ~~--i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~---~~lR~~p~~~~t~~~i~~~~~~l~~ 643 (965)
+. ....++.+. ..+.+. + ......+...|.++||.++.+. +.+|++....++.|+++.+++.+++
T Consensus 286 ~~~~~~~~rS~~~-~~~~~~--~----~~~~~~~~~~L~~~GI~~~~G~~~~g~~RIs~~~~~~~edv~~Lv~~l~~ 355 (361)
T d2c0ra1 286 RGCVDVDSRSDMN-ITFRLA--S----EELEKEFVKASEQEGFVGLKGHRSVGGLRASIYNAVPYESCEALVQFMEH 355 (361)
T ss_dssp EESSCGGGBCSSE-EEEECS--C----HHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ccCCChhhccceE-EEEECC--C----cccHHHHHHHHHHCCCEEecCCCcCCeEEEEecCCCCHHHHHHHHHHHHH
Confidence 11 122333332 333332 2 1224568889999999987752 3499999888999999999988875
|
| >d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: O-acetyl-L-homoserine sulfhydrylase species: Thermus thermophilus [TaxId: 274]
Probab=98.85 E-value=5.3e-08 Score=105.18 Aligned_cols=247 Identities=15% Similarity=0.118 Sum_probs=150.7
Q ss_pred cCCCCcHHHHHHHHHHHhhcCCCCCeEEEcCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCc
Q psy8199 291 LSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQ 370 (965)
Q Consensus 291 ~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~ 370 (965)
+++..++....|+++|+++- +-+.++.++||..|+.+++.... ..+++||+.+..|+|.....
T Consensus 52 YsR~~nPT~~~LE~~la~LE--~~~~a~~~~SGmaAi~~~~~~l~--------~~gd~il~~~~~Yg~t~~l~------- 114 (421)
T d2ctza1 52 YSRIMNPTVDVLEKRLAALE--GGKAALATASGHAAQFLALTTLA--------QAGDNIVSTPNLYGGTFNQF------- 114 (421)
T ss_dssp CBTTBCHHHHHHHHHHHHHH--TCSEEEEESSHHHHHHHHHHHHC--------CTTCEEEECSCCCHHHHHHH-------
T ss_pred ecCCCCHHHHHHHHHHHHHh--CCCeEEEecChHHHHHHHHHhhc--------ccccceeecCCcCCchhHHH-------
Confidence 45678899999999999998 45788899999999988887554 36789999999998862211
Q ss_pred CccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHH
Q psy8199 371 SFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVRE 450 (965)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~ 450 (965)
...+........++... ...+..++.+ .+++.+|++|. +.|++..++. +++|++
T Consensus 115 --~~~~~~~gi~~~~~d~~----------------~~~~~~~~~~---~~~t~li~~Et-psNP~l~v~D----i~~i~~ 168 (421)
T d2ctza1 115 --KVTLKRLGIEVRFTSRE----------------ERPEEFLALT---DEKTRAWWVES-IGNPALNIPD----LEALAQ 168 (421)
T ss_dssp --HTHHHHTTCEEEECCTT----------------CCHHHHHHHC---CTTEEEEEEES-SCTTTCCCCC----HHHHHH
T ss_pred --HHHHhhccccceecccc----------------cCcchhcccc---CCCceEEEEcC-CCcceeEecc----hHHHHH
Confidence 11111222233333221 0123333333 46799999999 8999888887 999999
Q ss_pred HHHhcCCeEEEeccccCCCcccccccccccCCCcceee--eccccCC-CcccceeeeecHHHH-H---------------
Q psy8199 451 ICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLC--LSKGITG-GYLPLSLVMTTDKIY-N--------------- 511 (965)
Q Consensus 451 l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt--~sK~l~g-G~~pig~v~~~~~i~-~--------------- 511 (965)
+|+++|+++|+|..... ....+.-+....|+++ .+|-++| +=.-.|+++.+++.. +
T Consensus 169 iA~~~g~~~vvDnT~a~-----tP~~~~Pl~~GaDiVvhS~TKyl~GHsD~l~G~vv~~~~~~~~~~r~~~~~~~~~~~~ 243 (421)
T d2ctza1 169 AAREKGVALIVDNTFGM-----GGYLLRPLAWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYH 243 (421)
T ss_dssp HHHHHTCEEEEECGGGG-----GGTSCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGT
T ss_pred HHHhcCCceEecccccc-----cceeccccccCCcEEEEechhhccCCCCeEEEEEEcCCcchhhhcccccccCCchhhh
Confidence 99999999999997531 1122333444578875 6798877 323345565543211 0
Q ss_pred ------hhhcc-----CCcccc-cccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHccc-----CCCce
Q psy8199 512 ------SIYYK-----NNINIF-LHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLI-----THPKI 574 (965)
Q Consensus 512 ------~~~~~-----~~~~~~-~~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~l~-----~~~~i 574 (965)
.+... -..... ..|. ..+|..|..++..|+.+.- ..++-.++...+.+.|++-. .+|++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~G~--~~sP~~a~l~~rgl~TL~l--Rm~~~~~nA~~vA~~L~~hp~V~~V~yPgL 319 (421)
T d2ctza1 244 GLRLTEAFGELAFIVKARVDGLRDQGQ--ALGPFEAWVVLLGMETLSL--RAERHVENTLHLAHWLLEQPQVAWVNYPGL 319 (421)
T ss_dssp TBCHHHHHGGGHHHHHHHHTHHHHHCC--CCCHHHHHHHHHHHTTHHH--HHHHHHHHHHHHHHHHHTCTTEEEEECTTS
T ss_pred hhHHHHHhccHHHHHHHHHHHHHhccC--CCCHHHHHHHhcCCcchhh--HHHHHHHHHHHHHhhhccCCCeeEEecCCc
Confidence 00000 000000 0122 3468888777777765532 24555666667777775431 13332
Q ss_pred e----------eee-ceeEEEEEEEe
Q psy8199 575 I----------NFR-QKGMIWAFDVI 589 (965)
Q Consensus 575 ~----------~v~-g~G~~~~i~~~ 589 (965)
. ... +-|.|+.|++.
T Consensus 320 ~s~p~~~~a~~~~~g~~G~~~sf~l~ 345 (421)
T d2ctza1 320 PHHPHHDRAQKYFKGKPGAVLTFGLK 345 (421)
T ss_dssp TTCTTHHHHHHHHTTCCCSEEEEEET
T ss_pred CCCccHHHHHHhcCCCCceEEEEEec
Confidence 2 122 35889999885
|
| >d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus alcalophilus [TaxId: 1445]
Probab=98.67 E-value=6.7e-08 Score=104.68 Aligned_cols=318 Identities=11% Similarity=-0.017 Sum_probs=157.7
Q ss_pred CCHHHHHHHHHHHhhcccc--------ccCCCCcHHHHHHHHHHHhhcCCCCC-eEEEcCChhHHHHHHHHHHHHHHHhc
Q psy8199 271 SNSYINKALKNQLNKLEHV--------MLSNLTHKPVIKLSEKLSSLTQYKLG-HCFYGSDGASAVEVALKMSFHYWYNK 341 (965)
Q Consensus 271 ~~p~v~~av~~~~~~~~~~--------~~~~~~~~~~~~la~~l~~~~~~~~~-~v~~~~sGseA~~~Al~~a~~~~~~~ 341 (965)
.+++|.+||.+++-+.... +.+.-..+...+..+.|+++++...+ .++|++|+++++..+......
T Consensus 14 ~p~~V~~a~~~~~~~~~~~~~~~~~~sHRs~~~~~~~~~~r~~l~~l~~~~~~~~i~~~~gt~~~~~~~~~~~~~----- 88 (360)
T d1w23a_ 14 LPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPNDYQILFLQGGASLQFTMLPMNLL----- 88 (360)
T ss_dssp CCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHC-----
T ss_pred CCHHHHHHHHHHHHhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHhhhc-----
Confidence 3799999999887542110 11111133456778888898875545 577777777776665554433
Q ss_pred CCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCc
Q psy8199 342 GFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNK 421 (965)
Q Consensus 342 g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~ 421 (965)
.+++++++...++++......... ..........+.... ..+++++.. ...
T Consensus 89 --~~~~~v~~~~~g~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~------------~~~~~~~~~----~~~ 139 (360)
T d1w23a_ 89 --TKGTIGNYVLTGSWSEKALKEAKL-----------LGETHIAASTKANSY------------QSIPDFSEF----QLN 139 (360)
T ss_dssp --CTTCEEEEEECSHHHHHHHHHHHT-----------TSEEEEEEECGGGTS------------CSCCCGGGC----CCC
T ss_pred --ccCcccceeeccchhhhhHHHHHH-----------hhhcceeeccccccc------------cchhhhhhc----ccc
Confidence 456777777666555422211111 000111111110000 011122211 122
Q ss_pred EEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcceeeeccccCCCcccce
Q psy8199 422 IAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLS 501 (965)
Q Consensus 422 ~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~sK~l~gG~~pig 501 (965)
...+.++. .+|.+.| +.+|.++|+++|+++|+|-|++ +|- ...-++.+ ..|+.+++|.++.+. +.+
T Consensus 140 ~~~~~~~~----~tg~~~~----~~~i~~~~~~~g~l~ivDavqs-~g~--~~id~~~~--~vd~~~~~~~k~~~~-~~~ 205 (360)
T d1w23a_ 140 ENDAYLHI----TSNNTIY----GTQYQNFPEINHAPLIADMSSD-ILS--RPLKVNQF--GMIYAGAQKNLGPSG-VTV 205 (360)
T ss_dssp TTEEEEEE----ESEETTT----TEECSSCCCCCSSCEEEECTTT-TTS--SCCCGGGC--SEEEEETTTTTSCTT-CEE
T ss_pred cccceeEe----cCCcccc----ceeeeeccccceeeEEeecccc-ccc--cccccccc--cceEEeeccccccCC-cce
Confidence 23344443 4566666 6678999999999999999997 542 22333444 458889999776642 344
Q ss_pred eeeecHHHHHhhhccCC---c-cccc-ccCCCCCCHHHHHHHHHHHHHHhcccHHHHHHH----HHHHHHHHHHcccCC-
Q psy8199 502 LVMTTDKIYNSIYYKNN---I-NIFL-HSHSYSGNPLACCAALATLEIFNKDNILQRISQ----DMKKITKALTSLITH- 571 (965)
Q Consensus 502 ~v~~~~~i~~~~~~~~~---~-~~~~-~~~t~~~~~~~~aaa~a~L~~~~~~~~~~~~~~----~~~~l~~~L~~l~~~- 571 (965)
.++.++...+....... . .... ........+....+....+....+........+ ...............
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (360)
T d1w23a_ 206 VIVKKDLLNTKVEQVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDESNGFY 285 (360)
T ss_dssp EEEEHHHHCSCCTTCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTTTSS
T ss_pred eeEechhhhcccccCCcchhhhhhhhhhhhcccccceeeechhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhccccc
Confidence 44444333221111000 0 0000 111122233333333333333332222222222 222222222211111
Q ss_pred Cc--eeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecC---CEEEEeCCcccCHHHHHHHHHhhhc
Q psy8199 572 PK--IINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG---NTVYLMPPYILNKNEIQHMTSAIFQ 643 (965)
Q Consensus 572 ~~--i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~---~~lR~~p~~~~t~~~i~~~~~~l~~ 643 (965)
.. -...|+.+ ...|.+. + ......+...|.++||.++.+. +.+|++..-.++.|+++++++.+.+
T Consensus 286 ~~~~~~~~rS~~-vvsf~i~--~----~~~~~~~~~~l~~~GI~~~~G~~~~ggiRiS~~~~~t~e~V~~Li~~~~~ 355 (360)
T d1w23a_ 286 VGHAEKGSRSLM-NVTFNLR--N----EELNQQFLAKAKEQGFVGLNGHRSVGGCRASIYNAVPIDACIALRELMIQ 355 (360)
T ss_dssp EESSCGGGBCSS-EEEEECS--S----HHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ccCCChhhccee-EEEEEcC--C----CccHHHHHHHHHHCCCeeeeCCCccCcEEEEeeCCCCHHHHHHHHHHHHH
Confidence 11 11334444 3444443 2 2234467788899999986542 3589997667799999999887654
|
| >d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.63 E-value=1e-06 Score=92.77 Aligned_cols=328 Identities=12% Similarity=0.092 Sum_probs=181.3
Q ss_pred ccccccccchhccCCCCCHHHHHHHHHHHhh-cc--ccc-cCCC---CcHHHHHHHH-HHHhhcCCCCCeEEE-cCChhH
Q psy8199 255 RYLDAISSWWVNLFGHSNSYINKALKNQLNK-LE--HVM-LSNL---THKPVIKLSE-KLSSLTQYKLGHCFY-GSDGAS 325 (965)
Q Consensus 255 ~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~-~~--~~~-~~~~---~~~~~~~la~-~l~~~~~~~~~~v~~-~~sGse 325 (965)
..|.++++-. +..|.|.++....+.+ +. +.. .... ..+..+.++. +..++++ .+.+-+ ..||+.
T Consensus 24 ~~l~LiaSEN-----~~S~~v~~a~~S~l~nkyaeG~pg~ryy~G~~~id~iE~la~~ra~~lF~--a~~anVqp~SGs~ 96 (405)
T d1kl1a_ 24 AKIELIASEN-----FVSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFG--AEHANVQPHSGAQ 96 (405)
T ss_dssp HSEECCTTCC-----CCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHC--CSEEECCCSSHHH
T ss_pred cCceEeccCC-----cCCHHHHHHhcCcccCcCcCCCCCccccCCchhHHHHHHHHHHHHHHHhC--CCcceeeccCchH
Confidence 4566655421 2468888887766543 21 100 0011 2233344553 4446674 343332 578999
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHH
Q psy8199 326 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIAR 405 (965)
Q Consensus 326 A~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (965)
||.+++.... .++++|+.++...=|+..- +.+. .+..........|.......
T Consensus 97 An~av~~all--------~pGD~im~l~l~~GGHlsh-----g~~~---~~~g~~~~~~~y~~d~~~~~----------- 149 (405)
T d1kl1a_ 97 ANMAVYFTVL--------EHGDTVLGMNLSHGGHLTH-----GSPV---NFSGVQYNFVAYGVDPETHV----------- 149 (405)
T ss_dssp HHHHHHHHHC--------CTTCEEEEECGGGTCCGGG-----TCTT---SHHHHHSEEEEECBCTTTCS-----------
T ss_pred HHHHHHHHhc--------CCCCEEEEeeccccccccc-----Cccc---cccceEEEEEEeccchhccc-----------
Confidence 9998887664 3789999997544222100 0000 01111112222232211111
Q ss_pred HHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcc-cccccccccCCCc
Q psy8199 406 CAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRT-GKFFACEHAEIWP 484 (965)
Q Consensus 406 ~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~-G~~~~~~~~~~~p 484 (965)
.|.+++++..++..+ ..|++-. +..--..+ +++++++|++.|++|++|=.|. .|-. |..+..- +. ..
T Consensus 150 ID~d~l~~~a~~~kP--klIi~G~---S~y~r~~d----~~~~reIad~vga~l~~D~aH~-~GLIa~g~~~~P-~~-~a 217 (405)
T d1kl1a_ 150 IDYDDVREKARLHRP--KLIVAAA---SAYPRIID----FAKFREIADEVGAYLMVDMAHI-AGLVAAGLHPNP-VP-YA 217 (405)
T ss_dssp BCHHHHHHHHHHHCC--SEEEECC---SSCCSCCC----HHHHHHHHHHHTCEEEEECTTT-HHHHHTTSSCCS-TT-TC
T ss_pred ccHHHHHHHHHhhCc--ceEEecc---cccccccC----hHHHHHHHhhhCCEEecchhhH-hhhhhhhhcCCh-hh-hh
Confidence 377888888876544 4466633 22222222 8999999999999999998875 1211 1111111 12 25
Q ss_pred ceeeec--cccCCCcccceeeeecHHHHHhhhccCCcccccccCCCCCCHH-HHHHHHHHHHH-Hhc--ccHHHHHHHHH
Q psy8199 485 DFLCLS--KGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPL-ACCAALATLEI-FNK--DNILQRISQDM 558 (965)
Q Consensus 485 Divt~s--K~l~gG~~pig~v~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~-~~aaa~a~L~~-~~~--~~~~~~~~~~~ 558 (965)
|++|.+ |.|.|. +-|.+++++++.+.+... .+-+..+++.. ..|+-..+|.. +.. ....+++.++.
T Consensus 218 Dvvt~tThKtlrGP--rgg~I~~~~~~~~~i~~a------vfPg~qggp~~~~iAa~Aval~Ea~~~~fk~Ya~qvv~NA 289 (405)
T d1kl1a_ 218 HFVTTTTHKTLRGP--RGGMILCQEQFAKQIDKA------IFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNA 289 (405)
T ss_dssp SEEEEESSSTTCCC--SCEEEEECHHHHHHHHHH------HTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHH
T ss_pred hheeccccccccCC--CCceEEecchhHHHHHhh------hCcccccCcchhHHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence 899765 788773 667788888888777651 11233333322 33333334433 322 34778888899
Q ss_pred HHHHHHHHcccCCCceeeeec--eeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEe----ecC-------CEEEEeC
Q psy8199 559 KKITKALTSLITHPKIINFRQ--KGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLR----PIG-------NTVYLMP 625 (965)
Q Consensus 559 ~~l~~~L~~l~~~~~i~~v~g--~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~----~~~-------~~lR~~p 625 (965)
+.|.+.|.+. ++..+.| ...++.+++. ..+ .......+.|.+.||.+. |+. +.|||-.
T Consensus 290 kaLa~~L~~~----G~~vv~ggTd~H~vlvdl~-~~~----~~g~~ae~~Le~agI~~Nkn~iP~d~~~~~~~SGiRiGT 360 (405)
T d1kl1a_ 290 KRLASALQNE----GFTLVSGGTDNHLLLVDLR-PQQ----LTGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGT 360 (405)
T ss_dssp HHHHHHHHHT----TCEEGGGSCSSSEEEEECG-GGT----CCHHHHHHHHHHHTEECEECCCTTCSSCTTTCSEEEEEC
T ss_pred HHHHHHHhcC----CceeecCCCccceeecccc-ccC----CcHHHHHHHHHHcCeEEcCCcCCCCCCCCCCCCceeecC
Confidence 9999988764 4544444 4557777764 111 112334466788899876 221 4699986
Q ss_pred Ccc----cCHHHHHHHHHhhhccc
Q psy8199 626 PYI----LNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 626 ~~~----~t~~~i~~~~~~l~~~~ 645 (965)
|.. +.++++.++.+.+.+++
T Consensus 361 ~a~TtrG~~e~dm~~ia~~I~~~l 384 (405)
T d1kl1a_ 361 AAVTTRGFGLEEMDEIAAIIGLVL 384 (405)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHH
Confidence 644 46777777766655444
|
| >d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase subunit 2 (P-protein) species: Thermus thermophilus [TaxId: 274]
Probab=98.63 E-value=1.5e-06 Score=95.47 Aligned_cols=329 Identities=15% Similarity=0.143 Sum_probs=186.8
Q ss_pred CCCHHHHHHHHHHHhhccccccC------CCCcHHHHHHHHHHHhhcCCCCCeEEE-cCChhHHHHHHHHHHHHHHHhcC
Q psy8199 270 HSNSYINKALKNQLNKLEHVMLS------NLTHKPVIKLSEKLSSLTQYKLGHCFY-GSDGASAVEVALKMSFHYWYNKG 342 (965)
Q Consensus 270 h~~p~v~~av~~~~~~~~~~~~~------~~~~~~~~~la~~l~~~~~~~~~~v~~-~~sGseA~~~Al~~a~~~~~~~g 342 (965)
|=+|.+++.+..- ++.|+.. .+.-+..-++-..++++++ ++-+-. ...|+.|...|+.+++.+++.++
T Consensus 76 hy~P~v~~~~~~~---~TaYTPYQPaEiSQG~LQalfEfQtmi~eLTG--MdvaNaS~yDGatA~aeA~~ma~r~~~~~~ 150 (471)
T d1wyub1 76 KYNPKLHEEAARL---FADLHPYQDPRTAQGALRLMWELGEYLKALTG--MDAITLEPAAGAHGELTGILIIRAYHEDRG 150 (471)
T ss_dssp CCCCHHHHHHHHT---TSSCCTTSCGGGCHHHHHHHHHHHHHHHHHHT--CSEEECCCSSHHHHHHHHHHHHHHHHHHTT
T ss_pred ccCcchhhhHHHH---HhccCCCCCHHHHHHHHHHHHHHHHHHHHHhC--CCccccccchHHHHHHHHHHHHHHHhhhcc
Confidence 5578888887642 3333311 1112234577788999994 553322 35688888889999999888877
Q ss_pred CCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcE
Q psy8199 343 FLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKI 422 (965)
Q Consensus 343 ~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~ 422 (965)
...+..++.....+|..........+ .....++...... .+.+.++... .+++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~------------~~~~~~~~~~---~~~~ 203 (471)
T d1wyub1 151 EGRTRRVVLVPDSAHGSNPATASMAG------------YQVREIPSGPEGE------------VDLEALKREL---GPHV 203 (471)
T ss_dssp CTTTCCEEEEETTSCTHHHHHHHHTT------------CEEEEECBCTTSS------------BCHHHHHHHC---STTE
T ss_pred cccccccccCCcccccceeeeeeccc------------ceeeccccccccc------------ccchhhhhhh---hccc
Confidence 76666677777666655322222111 1222333221111 2345544433 4678
Q ss_pred EEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEecccc----CCCcccccccccccCCCcceeeec--c----c
Q psy8199 423 AAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAV----GCGRTGKFFACEHAEIWPDFLCLS--K----G 492 (965)
Q Consensus 423 aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t----g~gr~G~~~~~~~~~~~pDivt~s--K----~ 492 (965)
+++++.. ++..++.... .+.+.++++++|.++++|-+-- ++-+.|.. .-|+++.+ + .
T Consensus 204 a~v~v~~-p~~~g~~e~~----~~~~~~~~h~~g~~~~~~~~~~~~~~~l~~p~~~--------g~div~vg~~q~~G~P 270 (471)
T d1wyub1 204 AALMLTN-PNTLGLFERR----ILEISRLCKEAGVQLYYDGANLNAIMGWARPGDM--------GFDVVHLNLHKTFTVP 270 (471)
T ss_dssp EEEEECS-SCTTSCCCTT----HHHHHHHHHHHTCEEEEEGGGGGGTTTTCCHHHH--------TCSEEECCTTTTTCCC
T ss_pred cceeecc-CCCcccccch----hhhhHHHHHhccccccccccchhhhhhccccCcc--------cccccccccccccccc
Confidence 8888876 4444433222 6778899999999888875422 11111111 13555432 3 3
Q ss_pred cCCCcccceeeeecHHHHHhhhcc----C---------CcccccccCCCCCCHHHHHHHHHHHHHHhccc---HHHHHHH
Q psy8199 493 ITGGYLPLSLVMTTDKIYNSIYYK----N---------NINIFLHSHSYSGNPLACCAALATLEIFNKDN---ILQRISQ 556 (965)
Q Consensus 493 l~gG~~pig~v~~~~~i~~~~~~~----~---------~~~~~~~~~t~~~~~~~~aaa~a~L~~~~~~~---~~~~~~~ 556 (965)
+++|+--+|++.+++++...+-.. + +.+.+..-.+.+++.+.+.+|...+..+-.++ +-++...
T Consensus 271 ~~~GGP~~G~~a~~~~~~R~~PGRiV~~~~~~~~~~~~REqhIrRe~actnqaL~al~A~vYlsllG~~GL~elA~~~~~ 350 (471)
T d1wyub1 271 HGGGGPGSGPVGVKAHLAPYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVL 350 (471)
T ss_dssp CTTSCCCCCCEEECGGGGGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccceeehhhhhccCCCceecCCCccccccCCCcccccchhhhhhhHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 445544578888888887765421 0 11111111223344554444444555555443 5566777
Q ss_pred HHHHHHHHHHcccCCCceeeeeceeEE-EEEEEeecCccchhhHHHHHHHHHHHcCcEEe----e--cCCEEEEeCCccc
Q psy8199 557 DMKKITKALTSLITHPKIINFRQKGMI-WAFDVIIEDPEQIETFSKKFFVAALKNELLLR----P--IGNTVYLMPPYIL 629 (965)
Q Consensus 557 ~~~~l~~~L~~l~~~~~i~~v~g~G~~-~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~----~--~~~~lR~~p~~~~ 629 (965)
+..++.++|+.. ++... ..+.+ --|.+. ... ......+.++|.+.|++.. | ..+.+.+++.=..
T Consensus 351 ~A~Yla~~L~~~----G~~~~-~~~~ff~EFvv~--~~~--~~~~~~i~k~L~~~G~~~~~~~~p~~~~~~llv~vTE~~ 421 (471)
T d1wyub1 351 NARYLKELLKEK----GYRVP-YDGPSMHEFVAQ--PPE--GFRALDLAKGLLELGFHPPTVYFPLIVKEALMVEPTETE 421 (471)
T ss_dssp HHHHHHHHHHHT----TCBCS-SCSSCCSCEEEB--CST--TCCHHHHHHHHHHTTCCCCEESCSTTSTTCEEECCCTTS
T ss_pred HHHHHHHHHhhc----Cceec-cCcceeeEEeec--CCC--CCCHHHHHHHHHHcCCCCCcccCcCCCCCeEEEecCCCC
Confidence 888888888542 33322 22322 222221 111 1113457788999998643 2 2367889999999
Q ss_pred CHHHHHHHHHhhhcccccHHHHH
Q psy8199 630 NKNEIQHMTSAIFQTFNELDEVI 652 (965)
Q Consensus 630 t~~~i~~~~~~l~~~~~~~~e~l 652 (965)
|+++||.+++++++++.+..+.+
T Consensus 422 tkedID~lv~aL~~i~~e~~~~~ 444 (471)
T d1wyub1 422 AKETLEAFAEAMGALLKKPKEWL 444 (471)
T ss_dssp CHHHHHHHHHHHHHHHTSCHHHH
T ss_pred CHHHHHHHHHHHHHHHHhhHHHH
Confidence 99999999999998877766543
|
| >d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Escherichia coli [TaxId: 562]
Probab=98.59 E-value=1.2e-06 Score=92.76 Aligned_cols=316 Identities=13% Similarity=0.101 Sum_probs=173.8
Q ss_pred CCHHHHHHHHHHHhh-cc--ccc-cCCC---CcHHHHHHHHHH-HhhcCCCCCeEEE-cCChhHHHHHHHHHHHHHHHhc
Q psy8199 271 SNSYINKALKNQLNK-LE--HVM-LSNL---THKPVIKLSEKL-SSLTQYKLGHCFY-GSDGASAVEVALKMSFHYWYNK 341 (965)
Q Consensus 271 ~~p~v~~av~~~~~~-~~--~~~-~~~~---~~~~~~~la~~l-~~~~~~~~~~v~~-~~sGseA~~~Al~~a~~~~~~~ 341 (965)
..|.|.+++.-.+.+ +. +.. .... ..+..+.|+... .++++ .+.+-+ ..||+.||.+++....
T Consensus 38 ~S~~v~~a~~S~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~--a~~anVqp~SGs~AN~av~~All------ 109 (416)
T d1dfoa_ 38 TSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKELFG--ADYANVQPHSGSQANFAVYTALL------ 109 (416)
T ss_dssp CCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHT--CSEEECCCSSHHHHHHHHHHHHC------
T ss_pred CCHHHHHHhcCcccCcccCCCCCCcccCCChhHHHHHHHHHHHHHHHhC--CCcceeecccCccHHHHHHHHhc------
Confidence 468888877665543 11 100 0111 224445556544 45674 344333 5889999999988664
Q ss_pred CCCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCc
Q psy8199 342 GFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNK 421 (965)
Q Consensus 342 g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~ 421 (965)
.++++|+.++... |.++.--... .+..........+.... .. .|.+++++...+..+
T Consensus 110 --~pGD~Il~l~l~~-GGHlshg~~~-------~~~g~~~~~~~y~~d~~-~~-----------IDyd~l~~~a~~~kP- 166 (416)
T d1dfoa_ 110 --EPGDTVLGMNLAH-GGHLTHGSPV-------NFSGKLYNIVPYGIDAT-GH-----------IDYADLEKQAKEHKP- 166 (416)
T ss_dssp --CTTCEEEEECTTT-TCCGGGTCTT-------SHHHHHSEEEEECBCSS-SS-----------BCHHHHHHHHHHHCC-
T ss_pred --CCCCeeeeccccc-cccccccccc-------cccCceEEEEecccCCc-cC-----------ccHHHHHHHHHHhcc-
Confidence 3789999997543 3321111100 00111111111111111 11 377888887776544
Q ss_pred EEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcc-cccccccccCCCcceeee--ccccCCCcc
Q psy8199 422 IAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRT-GKFFACEHAEIWPDFLCL--SKGITGGYL 498 (965)
Q Consensus 422 ~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~-G~~~~~~~~~~~pDivt~--sK~l~gG~~ 498 (965)
..|++-. +...-..+ +++++++|++.|+++++|-.|. .|-. |..+.. -+.. .|++|. -|.|.|.
T Consensus 167 -klIi~G~---S~y~r~~d----~~~~reiad~vga~l~~D~aH~-~GLIa~g~~~s-P~~~-aDvvt~tThKtlrGP-- 233 (416)
T d1dfoa_ 167 -KMIIGGF---SAYSGVVD----WAKMREIADSIGAYLFVDMAHV-AGLVAAGVYPN-PVPH-AHVVTTTTHKTLAGP-- 233 (416)
T ss_dssp -SEEEEEC---SSCCSCCC----HHHHHHHHHHTTCEEEEECTTT-HHHHHHTSSCC-CTTT-SSEEEEESSSTTCCC--
T ss_pred -ceEEecc---cccccccC----HHHHHHHHHhcCceEEcchhhh-hcceeccccCC-cccc-cceeeeehhhcccCC--
Confidence 4455533 34333444 8999999999999999999876 2211 111111 1222 488865 5888772
Q ss_pred cceeeeec---HHHHHhhhccCCcccccccCCCCCC-HHHHHHHHHHHHHHhc---ccHHHHHHHHHHHHHHHHHcccCC
Q psy8199 499 PLSLVMTT---DKIYNSIYYKNNINIFLHSHSYSGN-PLACCAALATLEIFNK---DNILQRISQDMKKITKALTSLITH 571 (965)
Q Consensus 499 pig~v~~~---~~i~~~~~~~~~~~~~~~~~t~~~~-~~~~aaa~a~L~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~ 571 (965)
+-|.++++ +++++.+... ..-+..+++ .-..|+...+|....+ .+..+++.++.+.|.+.|.+.
T Consensus 234 rggiI~~~~~~~~~~~~i~~a------vfPg~qggp~~~~iaa~Aval~Ea~~~~fk~Y~~qvv~NA~~La~~L~~~--- 304 (416)
T d1dfoa_ 234 RGGLILAKGGSEELYKKLNSA------VFPGGQGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAMVEVFLER--- 304 (416)
T ss_dssp SCEEEEESSCCHHHHHHHHHH------HTTTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred CceEEEeccchHhHHHHHHhh------hCcccccCccHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhC---
Confidence 44556654 5666666541 112233333 2333333444544322 347788889999999998765
Q ss_pred Cceeeeec--eeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEe----ec-------CCEEEEeCCcc----cCHHHH
Q psy8199 572 PKIINFRQ--KGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLR----PI-------GNTVYLMPPYI----LNKNEI 634 (965)
Q Consensus 572 ~~i~~v~g--~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~----~~-------~~~lR~~p~~~----~t~~~i 634 (965)
++..+.| ...++.+++. .. .-........|.+.||.+. |+ ...||+-.|.. +.++++
T Consensus 305 -G~~iv~ggTdnHlvlvdl~-~~----~~~G~~a~~~Le~~gI~~Nkn~iP~d~~~~~~~SGiRiGT~a~TtrG~~e~d~ 378 (416)
T d1dfoa_ 305 -GYKVVSGGTDNHLFLVDLV-DK----NLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEAEA 378 (416)
T ss_dssp -TCEEGGGSCSSSEEEEECG-GG----TCCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCHHHH
T ss_pred -CcccccCCCCCceeEEEec-cc----CCCHHHHHHHHHHcCeEEeCCcCCCCCCCCCCCCceEeCCHHHHhCCCCHHHH
Confidence 4444433 3456677764 11 1113345677888899874 22 14699986644 467777
Q ss_pred HHHHHhhhccc
Q psy8199 635 QHMTSAIFQTF 645 (965)
Q Consensus 635 ~~~~~~l~~~~ 645 (965)
.++.+-+.+++
T Consensus 379 ~~iA~~I~~~l 389 (416)
T d1dfoa_ 379 KELAGWMCDVL 389 (416)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77766665544
|
| >d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Escherichia coli [TaxId: 562]
Probab=98.46 E-value=1.3e-06 Score=94.04 Aligned_cols=319 Identities=8% Similarity=-0.056 Sum_probs=157.0
Q ss_pred CHHHHHHHHHHHhhcccccc-----CCC---CcHHHHHHHHHHHhhcCCCCC-eEEEcCChhHHHHHHHHHHHHHHHhcC
Q psy8199 272 NSYINKALKNQLNKLEHVML-----SNL---THKPVIKLSEKLSSLTQYKLG-HCFYGSDGASAVEVALKMSFHYWYNKG 342 (965)
Q Consensus 272 ~p~v~~av~~~~~~~~~~~~-----~~~---~~~~~~~la~~l~~~~~~~~~-~v~~~~sGseA~~~Al~~a~~~~~~~g 342 (965)
+|+|++||.+++.+....+. +.. ..+...+..+.|+++++...+ .|+|++|++++...|+.....
T Consensus 13 p~~Vl~a~~~~~~~~~~~~~~~~~~sHRs~ef~~l~~~~r~~l~~l~~~~~~~~v~~~~gs~t~~~~a~~~~~~------ 86 (360)
T d1bjna_ 13 PAEVLKQAQQELRDWNGLGTSVMEVSHRGKEFIQVAEEAEKDFRDLLNVPSNYKVLFCHGGGRGQFAAVPLNIL------ 86 (360)
T ss_dssp CHHHHHHHHHTSSSGGGSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHC------
T ss_pred CHHHHHHHHHHHhhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCchHHHHhhhhhccc------
Confidence 79999999988765321100 001 123456788888998875433 688888877777666543322
Q ss_pred CCCceEEEEEcCCccCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcE
Q psy8199 343 FLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKI 422 (965)
Q Consensus 343 ~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~ 422 (965)
.+++.+++...++.+....-+.... .........+.... .+...+++.+.. ..++
T Consensus 87 -~~~~~v~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~------------~~~~~~~~~~~~-~~~~ 141 (360)
T d1bjna_ 87 -GDKTTADYVDAGYWAASAIKEAKKY-----------CTPNVFDAKVTVDG------------LRAVKPMREWQL-SDNA 141 (360)
T ss_dssp -TTCCEEEEEESSHHHHHHHHHHTTT-----------SEEEEEECEEEETT------------EEEECCGGGCCC-CSSC
T ss_pred -ccccccceecccchhhhhHHHHhhc-----------CccceeeccccCCC------------cchhhhhhhhcc-CCce
Confidence 3566666665554443221111110 00011111110000 011122222221 2334
Q ss_pred EEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEeccccCCCcccccccccccCCCcceeeeccccCCCccccee
Q psy8199 423 AAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSL 502 (965)
Q Consensus 423 aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt~sK~l~gG~~pig~ 502 (965)
.+|... .+.+|...+.++ + .|..+++++++|-+++ ++.. ..+..++..|+.+.+|+++++. +.+.
T Consensus 142 v~v~~~---~~~t~~~~~~~~----i--~~~~~~~~v~vDa~~~-~~~~----~vd~~~~dv~~~ss~k~~~~~~-~~~~ 206 (360)
T d1bjna_ 142 AYMHYC---PNETIDGIAIDE----T--PDFGADVVVAADFSST-ILSR----PIDVSRYGVIYAGAQKNIGPAG-LTIV 206 (360)
T ss_dssp SCEEEC---SEETTTTEECCC----C--CCCCTTCCEEEECTTT-TTSS----CCCGGGCSEEEEETTTTTSSTT-CEEE
T ss_pred eEEEec---ccccccCccccc----e--ecccccceeeeeeecc-ccce----eeeeccceeEEEEcccccccCC-Ccee
Confidence 455543 466776665332 2 4677899999998774 4321 2333445456667789887752 4455
Q ss_pred eeecHHHHHhhhccCCc----cc-ccccCCCCCCHHHHHHHHHHHHHHhcccHH----HHHHHHHHHHHHHHHcccCC--
Q psy8199 503 VMTTDKIYNSIYYKNNI----NI-FLHSHSYSGNPLACCAALATLEIFNKDNIL----QRISQDMKKITKALTSLITH-- 571 (965)
Q Consensus 503 v~~~~~i~~~~~~~~~~----~~-~~~~~t~~~~~~~~aaa~a~L~~~~~~~~~----~~~~~~~~~l~~~L~~l~~~-- 571 (965)
++.++...+........ .. .....+....+.....+............. ++.++....+...+......
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (360)
T d1bjna_ 207 IVREDLLGKANIACPSILDYSILNDNGSMFNTPPTFAWYLSGLVFKWLKANGGVAEMDKINQQKAELLYGVIDNSDFYRN 286 (360)
T ss_dssp EEEGGGCSCCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCSSEEC
T ss_pred EeeehhhhhccccCCcchhhHHHHhhhhhccccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhccccccc
Confidence 55544332221110000 00 011122223333333333333322222222 22223333333333322111
Q ss_pred CceeeeeceeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEeecC---CEEEEeCCcccCHHHHHHHHHhhhc
Q psy8199 572 PKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG---NTVYLMPPYILNKNEIQHMTSAIFQ 643 (965)
Q Consensus 572 ~~i~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~---~~lR~~p~~~~t~~~i~~~~~~l~~ 643 (965)
......++.+ ..+|.+. ++ .....+...+.++||.++.+. +.+|++....+++|+++.+++.+++
T Consensus 287 ~~~~~~rs~~-v~~f~~~--~~----~~~~~~~~~l~~~Gi~~~~G~~~~g~~Ris~~~~~t~edV~~li~~l~e 354 (360)
T d1bjna_ 287 DVAKRNRSRM-NVPFQLA--DS----ALDKLFLEESFAAGLHALKGHRVVGGMRASIYNAMPLEGVKALTDFMVE 354 (360)
T ss_dssp CBCGGGBCSS-EEEEEES--SG----GGHHHHHHHHHHTTEECCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHH
T ss_pred cCCcccccce-EEEEEcC--Cc----ccHHHHHHHHHHCCCEeecCCCccCeEEEEecCCCCHHHHHHHHHHHHH
Confidence 1112333334 3445553 31 223467788899999887642 3489998888999999999998875
|
| >d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase (decarboxylating) subunit 1 species: Thermus thermophilus [TaxId: 274]
Probab=98.45 E-value=6.7e-06 Score=88.92 Aligned_cols=291 Identities=12% Similarity=0.096 Sum_probs=168.0
Q ss_pred HHHHHHHHHHHhhcCCCCCeEEE-cCChhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCccCCccccccccCCcCccch
Q psy8199 297 KPVIKLSEKLSSLTQYKLGHCFY-GSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEI 375 (965)
Q Consensus 297 ~~~~~la~~l~~~~~~~~~~v~~-~~sGseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~ 375 (965)
+..-++.+.|++++ +++.+-+ ...|+.|...|+.++++++ +++++++.+. -|..+.++.....
T Consensus 108 q~l~e~q~~l~elt--Gmd~~n~s~~~ga~a~~~~~~~~~~~~------~~~~~~v~~~-~~p~~~~v~~t~a------- 171 (437)
T d1wyua1 108 QATFEYQTMIAELA--GLEIANASMYDGATALAEGVLLALRET------GRMGVLVSQG-VHPEYRAVLRAYL------- 171 (437)
T ss_dssp HHHHHHHHHHHHHH--TSSEECSCBSSHHHHHHHHHHHHHHHH------TCCEEEEETT-SCHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHhh--CCCccccCchHHHHHHHHHHHHHHhhh------cccccccccc-cChHHhhhhhhhc-------
Confidence 34467888999999 5676554 4568888888899988874 6677777654 4444333322221
Q ss_pred hcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhc
Q psy8199 376 YTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNY 455 (965)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~ 455 (965)
.+...+++.++...... +. .+..+++|+|++.. .|..|.+.. ++++.+++++.
T Consensus 172 -~~~g~~vv~v~~~~~~~-------------~~-------~~~~~~~Aavmi~~--Pnt~G~~ed----~~~i~~~~h~~ 224 (437)
T d1wyua1 172 -EAVGAKLLTLPLEGGRT-------------PL-------PEVGEEVGAVVVQN--PNFLGALED----LGPFAEAAHGA 224 (437)
T ss_dssp -HHTTCEEEEECCBTTBC-------------CC-------CCCCTTEEEEEEES--SCTTSBCCC----HHHHHHHHHHT
T ss_pred -ccceeeEEeeecccccc-------------hh-------hhhccceeEEEEcc--ccccccccc----hHHHHHHhhhc
Confidence 11223344444321110 00 11256899988876 466676643 78999999999
Q ss_pred CCeEEEeccccCCCcccccccccccCCCcceee-----eccccCCCcccceeeeecHHHHHhhhcc--C------Ccccc
Q psy8199 456 NIHLIADEIAVGCGRTGKFFACEHAEIWPDFLC-----LSKGITGGYLPLSLVMTTDKIYNSIYYK--N------NINIF 522 (965)
Q Consensus 456 g~llI~DEv~tg~gr~G~~~~~~~~~~~pDivt-----~sK~l~gG~~pig~v~~~~~i~~~~~~~--~------~~~~~ 522 (965)
|.++++|--...++-.- .-..+| .|+++ ||=.+++|+-..|.+.+++++...+... + +...+
T Consensus 225 G~l~~~~ad~~al~~l~---~Pg~~G--aDi~~g~~q~fg~p~g~GGP~~G~~a~~~~l~r~lPgrivg~s~d~~G~~~~ 299 (437)
T d1wyua1 225 GALFVAVADPLSLGVLK---PPGAYG--ADIAVGDGQSLGLPMGFGGPHFGFLATKKAFVRQLPGRLVSETVDVEGRRGF 299 (437)
T ss_dssp TCEEEEECCTTGGGTBC---CHHHHT--CSEEEEECTTTTCCCGGGCSCCEEEEECGGGGGGCCSCCEEEEEBTTSCEEE
T ss_pred cceEEeeechhhhhccc---cccccc--cceEeeccceeccccCCCcCccccccccchhhccccccccccccccCCcccc
Confidence 99988875332221110 111122 47774 3334444434567788888877655321 0 00000
Q ss_pred ---------------cccCCCCCCHHHHHHHHHHHHHHhccc---HHHHHHHHHHHHHHHHHcccCCCceeeeeceeEEE
Q psy8199 523 ---------------LHSHSYSGNPLACCAALATLEIFNKDN---ILQRISQDMKKITKALTSLITHPKIINFRQKGMIW 584 (965)
Q Consensus 523 ---------------~~~~t~~~~~~~~aaa~a~L~~~~~~~---~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g~G~~~ 584 (965)
..+...+++.+.+..+..-+..+-.++ +.++...+..++.++|.++ +++..+.....|-
T Consensus 300 ~l~lqtreqhIrRekatsnict~q~l~a~~a~~Y~~~lG~~GL~~ia~~a~~~A~yl~~~L~~~---~g~~~~~~~~~f~ 376 (437)
T d1wyua1 300 ILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHALLLEV---PGVRPFTPKPFFN 376 (437)
T ss_dssp EECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS---TTCEECSCSSBCS
T ss_pred eeecccccccccccccccchhhHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHHHHHHhhhc---CCeeccCCCCeee
Confidence 112233445554444444454444333 4556667788888888665 3443332222332
Q ss_pred EEEEeecCccchhhHHHHHHHHHHHcCcEEe----e--cCCEEEEeCCcccCHHHHHHHHHhhhcc
Q psy8199 585 AFDVIIEDPEQIETFSKKFFVAALKNELLLR----P--IGNTVYLMPPYILNKNEIQHMTSAIFQT 644 (965)
Q Consensus 585 ~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~----~--~~~~lR~~p~~~~t~~~i~~~~~~l~~~ 644 (965)
-|.+. .+ ..+..+.++|.++|+... + ..+.+.++|.-..|.++||+++++++++
T Consensus 377 ef~v~-~~-----~~~~~i~k~L~d~G~~~~~~~~~~~~~~~lli~~TE~~tkeeiD~~v~al~ei 436 (437)
T d1wyua1 377 EFALA-LP-----KDPEAVRRALAERGFHGATPVPREYGENLALFAATELHEEEDLLALREALKEV 436 (437)
T ss_dssp EEEEE-CS-----SCHHHHHHHHHHTTCCCCEECCTTSCSSEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred EEEEE-CC-----CCHHHHHHHHHhCCCCCCcccccCCCCCeEEEecCCCCCHHHHHHHHHHHHHh
Confidence 22222 11 114468889999999642 1 2378999999999999999999988754
|
| >d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=98.11 E-value=0.00024 Score=75.99 Aligned_cols=331 Identities=13% Similarity=0.056 Sum_probs=174.0
Q ss_pred cccccccccchhccCCCCCHHHHHHHHHHHhh-c--ccc-ccCCC---CcHHHHHHH-HHHHhhcCCCCC--eEE-EcCC
Q psy8199 254 KRYLDAISSWWVNLFGHSNSYINKALKNQLNK-L--EHV-MLSNL---THKPVIKLS-EKLSSLTQYKLG--HCF-YGSD 322 (965)
Q Consensus 254 ~~ylD~~~~~~~~~lGh~~p~v~~av~~~~~~-~--~~~-~~~~~---~~~~~~~la-~~l~~~~~~~~~--~v~-~~~s 322 (965)
+..|.++++-. +..|.|.+|+...+.+ + ++. ..... ..+..+.++ ++..++++.+.+ .+- =..|
T Consensus 31 ~~~l~LIaSEN-----~~S~~v~~algS~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~~~~~~~~anVqp~S 105 (470)
T d1rv3a_ 31 RVGLELIASEN-----FASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYS 105 (470)
T ss_dssp HSSEECCTTCC-----CCCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSS
T ss_pred HcCceEecCCC-----cCCHHHHHHhcchhcccccCCCCCccccCCchhHHHHHHHHHHHHHHHhCCChhhccccccccC
Confidence 35566655421 2478888887665543 1 110 01111 123334444 344566753322 222 2578
Q ss_pred hhHHHHHHHHHHHHHHHhcCCCCceEEEEEcCCc-----cCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCC
Q psy8199 323 GASAVEVALKMSFHYWYNKGFLNKKKFICLQNSY-----HGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKG 397 (965)
Q Consensus 323 GseA~~~Al~~a~~~~~~~g~~~~~~vi~~~~~y-----Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (965)
|+.||.+++....+ ++++|+.++-.- ||+....... .+.....+....+.......
T Consensus 106 Gs~An~av~~all~--------pgD~im~~~l~~GGHlshg~~~~~~~~--------~~~~~~~~~~~y~v~~~~~~--- 166 (470)
T d1rv3a_ 106 GSPANFAVYTALVE--------PHGRIMGLDLPDGGHLTHGFMTDKKKI--------SATSIFFESMAYKVNPDTGY--- 166 (470)
T ss_dssp HHHHHHHHHHHHTC--------TTCEEEEECGGGTCCGGGCCBCSSCBC--------SHHHHHSEEEEECBCTTTCS---
T ss_pred CccHHHHHHHHhcC--------CCCeEeeeccccCCcccccccccCCCc--------ccccceeEeeEEEEecccCc---
Confidence 99999999886653 778899986432 2221110011 01111112222222111111
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEecccc-CCCccccccc
Q psy8199 398 NSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAV-GCGRTGKFFA 476 (965)
Q Consensus 398 ~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-g~gr~G~~~~ 476 (965)
.|.+++++..++..+ ..|++-. +..--..+ +++++++|++.|++|++|=.|. |+- .|..+.
T Consensus 167 --------IDyd~l~~~a~~~kP--klIi~G~---S~y~r~~d----~~~~reIad~vga~l~~D~aH~aGLI-A~g~~~ 228 (470)
T d1rv3a_ 167 --------IDYDRLEENARLFHP--KLIIAGT---SCYSRNLD----YGRLRKIADENGAYLMADMAHISGLV-VAGVVP 228 (470)
T ss_dssp --------BCHHHHHHHHHHHCC--SEEEECC---SSCCSCCC----HHHHHHHHHHTTCEEEEECTTTHHHH-HHTSSC
T ss_pred --------ccHHHHHHHHHhhCc--ceEeech---hhccccCC----HHHHHHHHhccCCeEEecchhhhhhc-cccccC
Confidence 367888887765444 4466633 22222233 8999999999999999998876 221 111111
Q ss_pred ccccCCCcceeeec--cccCCCcccceeeeecHH---------------HHHhhhccCCcccccccCCCCCCHH-HHHHH
Q psy8199 477 CEHAEIWPDFLCLS--KGITGGYLPLSLVMTTDK---------------IYNSIYYKNNINIFLHSHSYSGNPL-ACCAA 538 (965)
Q Consensus 477 ~~~~~~~pDivt~s--K~l~gG~~pig~v~~~~~---------------i~~~~~~~~~~~~~~~~~t~~~~~~-~~aaa 538 (965)
.- +. ..|+||.+ |.|.| -+-|.++++++ +.+.+... .+-++.+++-. ..||.
T Consensus 229 sP-l~-~aDvvt~tTHKtlrG--PrgGiI~~~~~~~~~~~~~~~~~~~~~~~~i~~a------vFPg~qggph~~~IAa~ 298 (470)
T d1rv3a_ 229 SP-FE-HCHVVTTTTHKTLRG--CRAGMIFYRRGVRSVDPKTGKEILYNLESLINSA------VFPGLQGGPHNHAIAGV 298 (470)
T ss_dssp CG-GG-TCSEEEEESSGGGCC--CSCEEEEEECSBCC-------CCBCCHHHHHHHH------HTTTTCCSCCHHHHHHH
T ss_pred Ch-hh-eeeeeeeehhhhccC--CcceEEEEccccccccccccchhHHHHHHHHhhh------cCccccccchhhHHHHH
Confidence 11 11 24899765 78877 24455665542 54444431 11233333333 33333
Q ss_pred HHHHHHHhc---ccHHHHHHHHHHHHHHHHHcccCCCceeeeec--eeEEEEEEEeecCccchhhHHHHHHHHHHHcCcE
Q psy8199 539 LATLEIFNK---DNILQRISQDMKKITKALTSLITHPKIINFRQ--KGMIWAFDVIIEDPEQIETFSKKFFVAALKNELL 613 (965)
Q Consensus 539 ~a~L~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v~g--~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~ 613 (965)
..++..... ....+++.++.+.|.+.|.+. ++..+.| ...++.+++. ..+ -......+.|.+.||.
T Consensus 299 Ava~~ea~~~~fk~Ya~qvv~NAk~La~~L~~~----G~~v~~ggTdnHlvlvdl~-~~g----~~g~~ae~~Le~~gI~ 369 (470)
T d1rv3a_ 299 AVALKQAMTPEFKEYQRQVVANCRALSAALVEL----GYKIVTGGSDNHLILVDLR-SKG----TDGGRAEKVLEACSIA 369 (470)
T ss_dssp HHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT----TCEEGGGSCSSSEEEEEGG-GGT----CCHHHHHHHHHHTTEE
T ss_pred HHHHHHhcChHHHHHHHHHHHHHHHHHHHHHhC----CceeccCCCCCceEEEeec-ccC----CcHHHHHHHHHHcCcE
Confidence 334444333 236677788888888888664 3333332 3446666654 111 1133455678889998
Q ss_pred Ee----ec------CCEEEEeCCcc----cCHHHHHHHHHhhhccc
Q psy8199 614 LR----PI------GNTVYLMPPYI----LNKNEIQHMTSAIFQTF 645 (965)
Q Consensus 614 ~~----~~------~~~lR~~p~~~----~t~~~i~~~~~~l~~~~ 645 (965)
+. |+ ...|||-.|.. +.++++.++.+-+.+++
T Consensus 370 ~Nkn~iP~D~~~~~~sGiRiGT~alTtrG~~e~dm~~iA~~I~~~l 415 (470)
T d1rv3a_ 370 CNKNTCPGDKSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGI 415 (470)
T ss_dssp CEEECCSSCSCTTSCCEEEEECHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred ECCCcCCCCCCCCCCCeeEecCHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 75 22 14699976643 56788777777666544
|
| >d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=97.99 E-value=0.00027 Score=75.36 Aligned_cols=319 Identities=13% Similarity=0.087 Sum_probs=161.5
Q ss_pred CCHHHHHHHHHHHhh-cc-------ccccCCCCcHHHHHHHH-HHHhhcCCCCCe---EEEcCChhHHHHHHHHHHHHHH
Q psy8199 271 SNSYINKALKNQLNK-LE-------HVMLSNLTHKPVIKLSE-KLSSLTQYKLGH---CFYGSDGASAVEVALKMSFHYW 338 (965)
Q Consensus 271 ~~p~v~~av~~~~~~-~~-------~~~~~~~~~~~~~~la~-~l~~~~~~~~~~---v~~~~sGseA~~~Al~~a~~~~ 338 (965)
..|.|.+|+...+.+ +. ++... -..+..+.++. +..++++..... -+=..||+.||.+++....+
T Consensus 39 ~S~~v~~algS~l~nkYaeG~pg~Ryy~G~-~~iD~iE~la~~ra~~lF~~~~a~w~vNVqp~SGs~An~av~~all~-- 115 (463)
T d2a7va1 39 CSRAALEALGSCLNNKYSEGYPGKRYYGGA-EVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQ-- 115 (463)
T ss_dssp CCHHHHHHHTSGGGTCCCCC-------------CTHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHCC--
T ss_pred CCHHHHHHhcchhcccccCCCCCccccCCc-hhHHHHHHHHHHHHHHHhCCCchhccCCccccccHHHHHHHHHHHcC--
Confidence 467787777655533 11 01111 12334455544 455677544442 13357899999888886643
Q ss_pred HhcCCCCceEEEEEcCCc-----cCCccccccccCCcCccchhcccCCCeeEecCCCCCCCCCCCChhHHHHHHHHHHHH
Q psy8199 339 YNKGFLNKKKFICLQNSY-----HGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEI 413 (965)
Q Consensus 339 ~~~g~~~~~~vi~~~~~y-----Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~ 413 (965)
++++|+.++... ||+.......+ +... ...++++.-.. +. ...|.+++++
T Consensus 116 ------pgD~Im~l~l~~GGHlshg~~~~~~~~~--------~~g~--~~~~~~Y~~d~--------~~-~~IDyd~~~~ 170 (463)
T d2a7va1 116 ------PHDRIMGLDLPDGGHLTHGYMSDVKRIS--------ATSI--FFESMPYKLNP--------KT-GLIDYNQLAL 170 (463)
T ss_dssp ------SCEECCC-----------------------------------------CCBCT--------TT-CSBCHHHHHH
T ss_pred ------CCceEEeeccCcCccccccccccccccc--------ceee--EeeeeeeeccC--------CC-CcCcHHHHHH
Confidence 678888876432 22210000000 0000 01111211000 00 0136788888
Q ss_pred HHHhCCCcEEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCeEEEecccc-CCCcccccccccccCCCcceeeec--
Q psy8199 414 LLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAV-GCGRTGKFFACEHAEIWPDFLCLS-- 490 (965)
Q Consensus 414 ~l~~~~~~~aaii~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-g~gr~G~~~~~~~~~~~pDivt~s-- 490 (965)
..++..+ ..|++-. +..--..+ +++++++|++.|++|++|=.|. |+- .|..+... +.. .|+||.+
T Consensus 171 ~a~~~kP--klIi~G~---S~y~r~~d----~~~~reIad~vga~l~~D~aH~aGLI-A~g~~~sP-~~~-aDvvt~tTH 238 (463)
T d2a7va1 171 TARLFRP--RLIIAGT---SAYARLID----YARMREVCDEVKAHLLADMAHISGLV-AAKVIPSP-FKH-ADIVTTTTH 238 (463)
T ss_dssp HHHHHCC--SEEEECC---SSCCSCCC----HHHHHHHHHHTTCEEEEECGGGHHHH-HTTSSCCG-GGT-CSEEEEESS
T ss_pred HHhhcCC--ceEEecc---cccccccC----HHHHHHHhhcccceEEechhhhhHHh-hhhhhcCh-hhh-hhhhhchhh
Confidence 7776544 4466633 22222333 8999999999999999999876 221 11111111 122 4899776
Q ss_pred cccCCCcccceeeeecH---------------HHHHhhhccCCcccccccCCCCCCHHH-HHHHHHHHHHHhc---ccHH
Q psy8199 491 KGITGGYLPLSLVMTTD---------------KIYNSIYYKNNINIFLHSHSYSGNPLA-CCAALATLEIFNK---DNIL 551 (965)
Q Consensus 491 K~l~gG~~pig~v~~~~---------------~i~~~~~~~~~~~~~~~~~t~~~~~~~-~aaa~a~L~~~~~---~~~~ 551 (965)
|.|.|. +-|.+++++ ++.+.+... .+-+..+++... .|+-..++....+ .+..
T Consensus 239 KTlrGP--rgGiIl~~~~~~~~~~~~~~~~~~~~~~~i~~a------vFPg~qggph~h~iAa~Ava~~ea~~~~fk~Ya 310 (463)
T d2a7va1 239 KTLRGA--RSGLIFYRKGVKAVDPKTGREIPYTFEDRINFA------VFPSLQGGPHNHAIAAVAVALKQACTPMFREYS 310 (463)
T ss_dssp GGGCSC--SCEEEEEECSEEEEETTTEEEEECCCHHHHHHH------HTTTTCCSCCHHHHHHHHHHHHHHHSHHHHHHH
T ss_pred hhhcCC--CceEEEEcccccccccccCccchhHHHHHhhhh------cCcccchhhhhhhHHHHHHHHHHhcCchHHHHH
Confidence 788772 445566654 334434330 111233333333 3333333333222 2467
Q ss_pred HHHHHHHHHHHHHHHcccCCCceeeeec--eeEEEEEEEeecCccchhhHHHHHHHHHHHcCcEEee----c------CC
Q psy8199 552 QRISQDMKKITKALTSLITHPKIINFRQ--KGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRP----I------GN 619 (965)
Q Consensus 552 ~~~~~~~~~l~~~L~~l~~~~~i~~v~g--~G~~~~i~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~----~------~~ 619 (965)
+++.++.+.|.+.|.+. ++..+.| ...++.+++. ..+ -......+.|.+.||.+.- + ..
T Consensus 311 ~qVv~NAk~La~~L~~~----G~~vv~ggTdnHlvlvdl~-~~~----~~G~~ae~~Le~~gI~~Nkn~iP~D~~~~~~s 381 (463)
T d2a7va1 311 LQVLKNARAMADALLER----GYSLVSGGTDNHLVLVDLR-PKG----LDGARAERVLELVSITANKNTCPGDRSAITPG 381 (463)
T ss_dssp HHHHHHHHHHHHHHHHT----TCEEGGGSCSSSEEEEECT-TTT----CCHHHHHHHHHHTTEECEEECCTTCCCSSSCS
T ss_pred HHHHHHHHHHHHHHHhC----CCeeecCCCCCceeeeecc-ccC----CCHHHHHHHHHhccCccCCccCCCCCCCCCCC
Confidence 88888888998888764 4433332 2346666664 111 1133455788899998852 1 14
Q ss_pred EEEEeCCcc----cCHHHHHHHHHhhhcccc
Q psy8199 620 TVYLMPPYI----LNKNEIQHMTSAIFQTFN 646 (965)
Q Consensus 620 ~lR~~p~~~----~t~~~i~~~~~~l~~~~~ 646 (965)
.|||-.|.. +.++++.++.+.+.+++.
T Consensus 382 GiRiGT~a~TtrG~~e~dm~~iA~~I~~~l~ 412 (463)
T d2a7va1 382 GLRLGAPALTSRQFREDDFRRVVDFIDEGVN 412 (463)
T ss_dssp EEEEESHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred ceEeCCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 689986644 467788777776665543
|
| >d1nvma2 c.1.10.5 (A:2-290) 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic domain {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: HMGL-like domain: 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic domain species: Pseudomonas sp. [TaxId: 306]
Probab=97.30 E-value=0.0028 Score=64.73 Aligned_cols=217 Identities=10% Similarity=0.079 Sum_probs=145.0
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEeeccCCCC-----cccHHHHHHHHHHHHh----cCcEeEEecCCCCHHHHHHHHHhC
Q psy8199 715 LSIESVITAAQKAKSDGATRFCMGAAWRELK-----DRDLDNIENMICEVKK----IGLETCLTLGMLNENQAYRLKKVG 785 (965)
Q Consensus 715 ~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~-----~~~~~~~~~~~~~i~~----~~~~i~~~~~~~~~e~l~~Lk~aG 785 (965)
++.++.++.++.+.+.|++.+-+..+..+.. ......-.+.++.+.. ..+......+.-..+.+....+.|
T Consensus 26 ~s~e~k~~i~~~L~~~Gv~~IEvG~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 105 (289)
T d1nvma2 26 YTLDDVRAIARALDKAKVDSIEVAHGDGLQGSSFNYGFGRHTDLEYIEAVAGEISHAQIATLLLPGIGSVHDLKNAYQAG 105 (289)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEECSCTTSTTCCBTTTBCCSSCHHHHHHHHHTTCSSSEEEEEECBTTBCHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCcCcccccchhhhccchHHHHHHHHHHhcchhHHHHHHhhhhhhHHHHHHHHHhc
Confidence 8899999999999999999998864332110 0111112233333332 334445566777888899999999
Q ss_pred CCeEeccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccccc
Q psy8199 786 LDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQ 865 (965)
Q Consensus 786 ~~~i~i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P 865 (965)
++.+.+.... ...+...+.++.+++.|+.+..+++.-..-+.+.+.+.++.+.+++ ++.|.+.
T Consensus 106 ~~~~r~~~~~-----------~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~I~l~---- 168 (289)
T d1nvma2 106 ARVVRVATHC-----------TEADVSKQHIEYARNLGMDTVGFLMMSHMIPAEKLAEQGKLMESYG--ATCIYMA---- 168 (289)
T ss_dssp CCEEEEEEET-----------TCGGGGHHHHHHHHHHTCEEEEEEESTTSSCHHHHHHHHHHHHHHT--CSEEEEE----
T ss_pred ccceEEEeeh-----------hhhhhHhHHHHHHHHhCCceeeEeeeccccCchhhhHHHHhhcccc--ceeeeec----
Confidence 9877665332 1233446778899999998887666555678888999999999999 7877654
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHHC-CCCceeccccccccch--hhHHHHhhcCccEEe-----eCCccccCCCCCC
Q psy8199 866 IKGTPLYGSSILDPLEFIRTIAVARITM-PTSRIRMSAGRKEMGE--TTQAFCFLAGANSIF-----YGDKLLTTDNTKT 937 (965)
Q Consensus 866 ~~gT~l~~~~~~~~~~~~~~ia~~R~~l-p~~~i~i~~~~~~~~~--~~~~~~l~~Gan~~~-----~g~~~~t~~~~~~ 937 (965)
.| ....+|.++.+++...|..+ |+..+.+-++ +..+. .-...|+.+||+.+= .|+ .+++...
T Consensus 169 --DT----~G~~~P~~v~~~v~~l~~~~~~~~~i~~H~H-n~~g~a~an~l~A~~~G~~~id~si~GlG~---~~GN~~t 238 (289)
T d1nvma2 169 --DS----GGAMSMNDIRDRMRAFKAVLKPETQVGMHAH-HNLSLGVANSIVAVEEGCDRVDASLAGMGA---GAGNAPL 238 (289)
T ss_dssp --CT----TCCCCHHHHHHHHHHHHHHSCTTSEEEEECB-CTTSCHHHHHHHHHHTTCCEEEEBGGGCSS---TTCBCBH
T ss_pred --ch----hhcccchhHHHHHHHHHHHhcccccceeeec-hHHHHHHHHHHHHHHhCCcEeeccccccCC---CCCCccH
Confidence 44 24468899999999999988 4444443332 23322 334478999999532 222 3344567
Q ss_pred hhhHHHHHHcCCCcchhhhHH
Q psy8199 938 NDDSKLLKKLGINTRNIKIKM 958 (965)
Q Consensus 938 ~~~~~~~~~~g~~~~~~~~~~ 958 (965)
++.+.+++++|+.+.--.+.+
T Consensus 239 E~lv~~l~~~g~~~~id~~~l 259 (289)
T d1nvma2 239 EVFIAVAERLGWNHGTDLYTL 259 (289)
T ss_dssp HHHHHHHHHHTCBCCSCHHHH
T ss_pred HHHHHHHHhcCCCCCCCHHHH
Confidence 888999999999764443433
|
| >d1k8wa5 d.265.1.2 (A:9-250) Pseudouridine synthase II TruB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Pseudouridine synthase superfamily: Pseudouridine synthase family: Pseudouridine synthase II TruB domain: Pseudouridine synthase II TruB species: Escherichia coli [TaxId: 562]
Probab=97.00 E-value=0.00032 Score=68.62 Aligned_cols=70 Identities=20% Similarity=0.389 Sum_probs=54.4
Q ss_pred CcEEEEECCCCCeeeeCCCCCcccHHHHHHHHCCcccCCCCccccccCCCCCceEEEeEeCHHHHHHHHHHHHcCCcCeE
Q psy8199 36 NEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRK 115 (965)
Q Consensus 36 ~~~lv~nKP~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~RLD~~tsGlll~a~~~~~~~~l~~~~~~~~~~K~ 115 (965)
+.++++|||+|+.++ .+++.+++.+. ..+++..+.||.-+||+|+++-+. + -++...+.+ -.|+
T Consensus 4 ~G~l~v~KP~g~tS~--------~vv~~~k~~l~----~kKvGh~GTLDP~AsGvL~i~ig~-a-TK~~~~~~~--~~K~ 67 (242)
T d1k8wa5 4 NGVLLLDKPQGMSSN--------DALQKVKRIYN----ANRAGHTGALDPLATGMLPICLGE-A-TKFSQYLLD--SDKR 67 (242)
T ss_dssp CEEEEEEECTTCCHH--------HHHHHHHHHTT----CSCEEESSCCCTTCEEEEEEEEGG-G-GGGTHHHHT--SCEE
T ss_pred cEEEEEecCCCCCHH--------HHHHHHHHHhC----CCcCCcCCcCCCcccceEEEEEch-h-hhhhhhhhh--hhhe
Confidence 469999999999996 47788877765 347899999999999999999875 2 334444443 4699
Q ss_pred EEEEEc
Q psy8199 116 YLAMVW 121 (965)
Q Consensus 116 Y~a~v~ 121 (965)
|.|.+.
T Consensus 68 Y~~~i~ 73 (242)
T d1k8wa5 68 YRVIAR 73 (242)
T ss_dssp EEEEEE
T ss_pred eeEEEE
Confidence 999664
|
| >d2ey4a2 d.265.1.2 (A:8-252) Pseudouridine synthase II TruB {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Pseudouridine synthase superfamily: Pseudouridine synthase family: Pseudouridine synthase II TruB domain: Pseudouridine synthase II TruB species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=96.90 E-value=0.00044 Score=67.04 Aligned_cols=70 Identities=26% Similarity=0.349 Sum_probs=56.7
Q ss_pred CcEEEEECCCCCeeeeCCCCCcccHHHHHHHHCCcccCCCCccccccCCCCCceEEEeEeCHHHHHHHHHHHHcCCcCeE
Q psy8199 36 NEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRK 115 (965)
Q Consensus 36 ~~~lv~nKP~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~RLD~~tsGlll~a~~~~~~~~l~~~~~~~~~~K~ 115 (965)
..++++|||.|+.++ .+++.+++.+. ..+++..+.||-..||+|+++-... .++...+. ...|+
T Consensus 42 ~G~l~idKP~G~TS~--------~vv~~vkk~l~----~kKvGH~GTLDP~AtGvL~i~iG~a--TKl~~~~~--~~~K~ 105 (245)
T d2ey4a2 42 FGVINLDKPPGPTSH--------EVVAWIKKILN----LEKAGHGGTLDPKVSGVLPVALEKA--TRVVQALL--PAGKE 105 (245)
T ss_dssp TEEEEEEECSSSCHH--------HHHHHHHHHTT----CSCEEESSCCCTTCEEEEEEEEGGG--GGGHHHHT--TSCEE
T ss_pred CcEEEEeCCCCCCHH--------HHHHHHHHHhC----cCCCCcCccCCCcceeeEEEEecHH--HHHHHHhc--cCCcE
Confidence 479999999999997 47888888775 3588999999999999999998753 34555443 48999
Q ss_pred EEEEEc
Q psy8199 116 YLAMVW 121 (965)
Q Consensus 116 Y~a~v~ 121 (965)
|.|.+.
T Consensus 106 Y~~~~~ 111 (245)
T d2ey4a2 106 YVALMH 111 (245)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999875
|
| >d1r3ea2 d.265.1.2 (A:10-237) Pseudouridine synthase II TruB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Pseudouridine synthase superfamily: Pseudouridine synthase family: Pseudouridine synthase II TruB domain: Pseudouridine synthase II TruB species: Thermotoga maritima [TaxId: 2336]
Probab=96.83 E-value=0.00034 Score=68.00 Aligned_cols=70 Identities=16% Similarity=0.287 Sum_probs=55.0
Q ss_pred CcEEEEECCCCCeeeeCCCCCcccHHHHHHHHCCcccCCCCccccccCCCCCceEEEeEeCHHHHHHHHHHHHcCCcCeE
Q psy8199 36 NEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRK 115 (965)
Q Consensus 36 ~~~lv~nKP~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~RLD~~tsGlll~a~~~~~~~~l~~~~~~~~~~K~ 115 (965)
+.++++|||.|+.++ .+++.+++.+. ..+++..++||-..||+|+++-+.. .++...+. ...|+
T Consensus 3 ~G~l~i~Kp~g~tS~--------~~v~~vk~~l~----~~KvGh~GTLDP~AsGvL~i~ig~~--tkl~~~~~--~~~K~ 66 (228)
T d1r3ea2 3 HGILVAYKPKGPTSH--------DVVDEVRKKLK----TRKVGHGGTLDPFACGVLIIGVNQG--TRILEFYK--DLKKV 66 (228)
T ss_dssp CEEEEEEECSSSCHH--------HHHHHHHHHTT----CSCEEESSCCCTTCEEEEEEEEGGG--GGGGGGGT--TSCEE
T ss_pred ceEEEEeCCCCCCHH--------HHHHHHHHHhC----CCccCcCcccCCcceeeEEEEEccc--ccchhhhh--cccce
Confidence 468999999999996 47788887765 3588999999999999999999753 34444333 35799
Q ss_pred EEEEEc
Q psy8199 116 YLAMVW 121 (965)
Q Consensus 116 Y~a~v~ 121 (965)
|.+.+.
T Consensus 67 Y~~~~~ 72 (228)
T d1r3ea2 67 YWVKMR 72 (228)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999664
|
| >d1sgva2 d.265.1.2 (A:3-235) Pseudouridine synthase II TruB {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Pseudouridine synthase superfamily: Pseudouridine synthase family: Pseudouridine synthase II TruB domain: Pseudouridine synthase II TruB species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.70 E-value=0.00047 Score=67.05 Aligned_cols=70 Identities=21% Similarity=0.424 Sum_probs=54.9
Q ss_pred CcEEEEECCCCCeeeeCCCCCcccHHHHHHHHCCcccCCCCccccccCCCCCceEEEeEeCHHHHHHHHHHHHcCCcCeE
Q psy8199 36 NEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRK 115 (965)
Q Consensus 36 ~~~lv~nKP~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~RLD~~tsGlll~a~~~~~~~~l~~~~~~~~~~K~ 115 (965)
..++++|||.|+.++ .+++.+++.+. ..+++..++||-..||+|+++-.. +.++...+.+ ..|+
T Consensus 4 ~G~l~v~KP~G~TS~--------~~v~~vk~~~~----~kKvGh~GTLDP~AtGvL~i~ig~--aTK~~~~~~~--~~K~ 67 (233)
T d1sgva2 4 PGIVVIDKPAGMTSH--------DVVGRCRRIFA----TRRVGHAGTLDPMATGVLVIGIER--ATKILGLLTA--APKS 67 (233)
T ss_dssp SEEEEEEECTTCCHH--------HHHHHHHHHTT----CSCEEESSCCCTTCEEEEEEEEGG--GGGGGGGTTT--SCEE
T ss_pred CEEEEEEcCCCCCHH--------HHHHHHHHHhC----cCccccCcCCCCcceeeEEEEech--hhhhhhhhcc--CceE
Confidence 468999999999886 47788877764 348899999999999999999975 3444443333 5799
Q ss_pred EEEEEc
Q psy8199 116 YLAMVW 121 (965)
Q Consensus 116 Y~a~v~ 121 (965)
|.|.+.
T Consensus 68 Y~~~~~ 73 (233)
T d1sgva2 68 YAATIR 73 (233)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999764
|
| >d2apoa2 d.265.1.2 (A:17-246) Pseudouridine synthase II TruB {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Pseudouridine synthase superfamily: Pseudouridine synthase family: Pseudouridine synthase II TruB domain: Pseudouridine synthase II TruB species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.68 E-value=0.00047 Score=66.40 Aligned_cols=70 Identities=17% Similarity=0.317 Sum_probs=55.9
Q ss_pred CcEEEEECCCCCeeeeCCCCCcccHHHHHHHHCCcccCCCCccccccCCCCCceEEEeEeCHHHHHHHHHHHHcCCcCeE
Q psy8199 36 NEIIILNKSAGLVVHPAIGNLSGTLFDNLLEIYPFLINVPRAGIVHRLDKNSSGLMVVAKSIKSYIHLVNQLKMHIVQRK 115 (965)
Q Consensus 36 ~~~lv~nKP~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~RLD~~tsGlll~a~~~~~~~~l~~~~~~~~~~K~ 115 (965)
..++++|||.|+.++ .+++.+++.+. ..+++..|.||-..||+|+++-... .++...+.. -.|+
T Consensus 29 ~G~l~idKP~G~TS~--------~vv~~ikk~l~----~kKvGH~GTLDP~AtGvL~v~iG~a--TKl~~~~~~--~~K~ 92 (230)
T d2apoa2 29 YGVVVVDKPRGPTSH--------EVSTWVKKILN----LDKAGHGGTLDPKVTGVLPVALERA--TKTIPMWHI--PPKE 92 (230)
T ss_dssp TEEEEEEECSSSCHH--------HHHHHHHHHTT----CSCEEESSCCCTTCEEEEEEEEGGG--GGGGGGTTS--SCEE
T ss_pred CcEEEEECCCCCCHH--------HHHHHHHHHcC----CCCCCcccccCccceeeeeeeecHH--HHHHHHHhc--cCce
Confidence 479999999999997 47888888775 4589999999999999999999863 244443333 5799
Q ss_pred EEEEEc
Q psy8199 116 YLAMVW 121 (965)
Q Consensus 116 Y~a~v~ 121 (965)
|.|.+.
T Consensus 93 Y~~~~~ 98 (230)
T d2apoa2 93 YVCLMH 98 (230)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999876
|
| >d1rpxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=96.15 E-value=0.033 Score=53.62 Aligned_cols=202 Identities=11% Similarity=0.058 Sum_probs=120.1
Q ss_pred CCHHHHHHHHHHHHHCCCCEE--EEeeccC-CCCcccHHHHHHHHHHHHh-cCcEeEEecCCC-CHHHHHHHHHhCCCeE
Q psy8199 715 LSIESVITAAQKAKSDGATRF--CMGAAWR-ELKDRDLDNIENMICEVKK-IGLETCLTLGML-NENQAYRLKKVGLDYY 789 (965)
Q Consensus 715 ~~~eei~~~~~~~~~~g~~~i--~l~~g~~-~~~~~~~~~~~~~~~~i~~-~~~~i~~~~~~~-~~e~l~~Lk~aG~~~i 789 (965)
.+...+.++++.+.+.|++.+ -+.+|.+ |...... +.++.+++ ....+-++.-.. ..+.++.+.++|++.+
T Consensus 20 ~d~~~l~~~i~~l~~~g~d~iHiDImDG~Fvpn~t~~~----~~v~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~~~i 95 (230)
T d1rpxa_ 20 ANFSKLGEQVKAIEQAGCDWIHVDVMDGRFVPNITIGP----LVVDSLRPITDLPLDVHLMIVEPDQRVPDFIKAGADIV 95 (230)
T ss_dssp SCGGGHHHHHHHHHHTTCCCEEEEEEBSSSSSCBCCCH----HHHHHHGGGCCSCEEEEEESSSHHHHHHHHHHTTCSEE
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEeCccCCcCCccccCh----HHHhhhhhccCceeeeeeeecchhhhHHHHhhccccee
Confidence 345667777777778887754 5556665 3223333 33444543 344444433222 3577899999999999
Q ss_pred eccCCC-CHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccccccCC
Q psy8199 790 NHNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKG 868 (965)
Q Consensus 790 ~i~~es-~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~g 868 (965)
.+-.|+ +.. +..+.++.++++|.++ ++.+......+.+...+ . ..+.|-++.. .||
T Consensus 96 ~~H~E~~~~~------------~~~~~i~~ik~~g~k~--Gialnp~T~~~~l~~~l---~----~vD~VllM~V--~PG 152 (230)
T d1rpxa_ 96 SVHCEQSSTI------------HLHRTINQIKSLGAKA--GVVLNPGTPLTAIEYVL---D----AVDLVLIMSV--NPG 152 (230)
T ss_dssp EEECSTTTCS------------CHHHHHHHHHHTTSEE--EEEECTTCCGGGGTTTT---T----TCSEEEEESS--CTT
T ss_pred EEeccccccc------------cHHHHHHHHHHcCCeE--EEEeCCCCCHHHHHHHH---h----hCCEEEEEEe--cCC
Confidence 999886 321 2456788899999887 44444444444433222 1 2577777743 467
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeCCccccCCCCCChhhHHHHHHcC
Q psy8199 869 TPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLLKKLG 948 (965)
Q Consensus 869 T~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~~~~~g 948 (965)
..=+...+...+.+.++.......-++..|-+.++-+. +.-..+..+|||.++.|..+.... ++.+.+..|+++.
T Consensus 153 f~GQ~f~~~~~~kI~~~~~~~~~~~~~~~I~vDGGIn~---~~i~~l~~~Gad~~V~GS~if~~~--d~~~~i~~lk~~~ 227 (230)
T d1rpxa_ 153 FGGQSFIESQVKKISDLRKICAERGLNPWIEVDGGVGP---KNAYKVIEAGANALVAGSAVFGAP--DYAEAIKGIKTSK 227 (230)
T ss_dssp CSSCCCCTTHHHHHHHHHHHHHHHTCCCEEEEESSCCT---TTHHHHHHHTCCEEEESHHHHTSS--CHHHHHHHHHTCC
T ss_pred cccchhhhhhHHHHHHHHHHHHhcCCceEEEEECCcCH---HHHHHHHHcCCCEEEEChHHHCCC--CHHHHHHHHHHhc
Confidence 54333333334444444444444455666666665432 234456899999999997665443 4677777777654
|
| >d2flia1 c.1.2.2 (A:3-219) D-ribulose-5-phosphate 3-epimerase {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Streptococcus pyogenes [TaxId: 1314]
Probab=95.96 E-value=0.035 Score=53.14 Aligned_cols=198 Identities=13% Similarity=0.099 Sum_probs=113.4
Q ss_pred CHHHHHHHHHHHHHCCCCEEEE--eeccC-CCCcccHHHHHHHHHHHHh-cCcEeEEecCCCC-HHHHHHHHHhCCCeEe
Q psy8199 716 SIESVITAAQKAKSDGATRFCM--GAAWR-ELKDRDLDNIENMICEVKK-IGLETCLTLGMLN-ENQAYRLKKVGLDYYN 790 (965)
Q Consensus 716 ~~eei~~~~~~~~~~g~~~i~l--~~g~~-~~~~~~~~~~~~~~~~i~~-~~~~i~~~~~~~~-~e~l~~Lk~aG~~~i~ 790 (965)
+...+.++++.+.+.|+..+++ .+|.+ |....+++ .++.+++ ....+-++.-..+ .+.++.+.++|++.+.
T Consensus 12 d~~~l~~~i~~~~~~g~d~iHiDimDg~Fvpn~s~g~~----~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~ga~~i~ 87 (217)
T d2flia1 12 DYANFASELARIEETDAEYVHIDIMDGQFVPNISFGAD----VVASMRKHSKLVFDCHLMVVDPERYVEAFAQAGADIMT 87 (217)
T ss_dssp CGGGHHHHHHHHHHTTCCEEEEEEEBSSSSSCBCBCHH----HHHHHHTTCCSEEEEEEESSSGGGGHHHHHHHTCSEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEcccCcCCCccccCHH----HHHHHHhcCCCceEeEEEecCHHHHHHHHHHcCCcEEE
Confidence 4456667777777888887765 44544 32333443 3444554 3444444332222 4479999999999999
Q ss_pred ccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCC
Q psy8199 791 HNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTP 870 (965)
Q Consensus 791 i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~ 870 (965)
+-.|+.+. ..+.++.+++.|++++ +-+......+++...+ .. .+.|-++.. .||..
T Consensus 88 ~H~E~~~~-------------~~~~i~~i~~~g~~~G--ial~p~T~~~~~~~~l---~~----id~vliM~V--~pG~~ 143 (217)
T d2flia1 88 IHTESTRH-------------IHGALQKIKAAGMKAG--VVINPGTPATALEPLL---DL----VDQVLIMTV--NPGFG 143 (217)
T ss_dssp EEGGGCSC-------------HHHHHHHHHHTTSEEE--EEECTTSCGGGGGGGT---TT----CSEEEEESS--CTTCS
T ss_pred eccccccC-------------HHHHHHHHHhcCCeEE--EEecCCcchhHHHhHH---hh----cCEEEEEEE--cCccc
Confidence 99887321 3556788999999874 3443333334333222 11 566766644 46643
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeCCccccCCCCCChhhHHHHHH
Q psy8199 871 LYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLLKK 946 (965)
Q Consensus 871 l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~~~~ 946 (965)
=+...+...+.+.++..+.+..-++..|.+.++-+. +.-..+..+|||.++.|..+.... ++.+.++.|++
T Consensus 144 Gq~f~~~~~~ki~~l~~~~~~~~~~~~I~vDGGIn~---~~i~~l~~aGad~~V~Gsaif~~~--d~~~~i~~lr~ 214 (217)
T d2flia1 144 GQAFIPECLEKVATVAKWRDEKGLSFDIEVDGGVDN---KTIRACYEAGANVFVAGSYLFKAS--DLVSQVQTLRT 214 (217)
T ss_dssp SCCCCGGGHHHHHHHHHHHHHTTCCCEEEEESSCCT---TTHHHHHHHTCCEEEESHHHHTSS--CHHHHHHHHHH
T ss_pred ccccchhhHHHHHHHHHHHHhcCCCeEEEEeCCCCH---HHHHHHHHCCCCEEEEchHHhCCC--CHHHHHHHHHH
Confidence 222333333444444333333345555666665532 234456789999999997655433 46666666554
|
| >d1h1ya_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=95.65 E-value=0.042 Score=52.72 Aligned_cols=197 Identities=16% Similarity=0.124 Sum_probs=116.9
Q ss_pred CHHHHHHHHHHHHHCCCCEEEE--eeccC-CCCcccHHHHHHHHHHHHh-cCcEeEEecCC-CCHHHHHHHHHhCCCeEe
Q psy8199 716 SIESVITAAQKAKSDGATRFCM--GAAWR-ELKDRDLDNIENMICEVKK-IGLETCLTLGM-LNENQAYRLKKVGLDYYN 790 (965)
Q Consensus 716 ~~eei~~~~~~~~~~g~~~i~l--~~g~~-~~~~~~~~~~~~~~~~i~~-~~~~i~~~~~~-~~~e~l~~Lk~aG~~~i~ 790 (965)
+.-.+.++++.+.+.|+..+++ .+|.+ |...... +.++.+++ ....+-++.-. -..+.++.+.++|.+.+.
T Consensus 12 d~~~l~~ei~~l~~~~~d~iHiDimDg~Fvpn~t~~~----~~i~~i~~~~~~~~dvHLMv~~p~~~i~~~~~~g~~~I~ 87 (220)
T d1h1ya_ 12 DFANLAAEADRMVRLGADWLHMDIMDGHFVPNLTIGA----PVIQSLRKHTKAYLDCHLMVTNPSDYVEPLAKAGASGFT 87 (220)
T ss_dssp CGGGHHHHHHHHHHTTCSEEEEEEEBSSSSSCBCBCH----HHHHHHHTTCCSEEEEEEESSCGGGGHHHHHHHTCSEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeecCccccccccCc----hhhhhhhhhcchhhhhHHHhcchhhhhHHhhhcccceee
Confidence 4456777777888888886554 45554 2222223 44455554 34444333211 235678999999999999
Q ss_pred ccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCC
Q psy8199 791 HNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTP 870 (965)
Q Consensus 791 i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~ 870 (965)
+-.|+... ...+.++.+++.|.+++ +.+......+++... +..++ +.+.|-++ ...||..
T Consensus 88 ~H~E~~~~------------~~~~~i~~i~~~g~~~G--lal~p~t~~~~~~~~---l~~~~-~~d~vlim--~v~PG~~ 147 (220)
T d1h1ya_ 88 FHIEVSRD------------NWQELIQSIKAKGMRPG--VSLRPGTPVEEVFPL---VEAEN-PVELVLVM--TVEPGFG 147 (220)
T ss_dssp EEGGGCTT------------THHHHHHHHHHTTCEEE--EEECTTSCGGGGHHH---HHSSS-CCSEEEEE--SSCTTCS
T ss_pred ecccccch------------hHHHHHHHHHHcCCCcc--eeeccccchhHHHHH---Hhccc-ccceEEEE--ecCCCCc
Confidence 99986321 23567788899998875 333333334444333 33333 24566666 4556642
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeCCccccCCCCCChhhHHHHH
Q psy8199 871 LYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLLK 945 (965)
Q Consensus 871 l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~~~ 945 (965)
=+... +..++-+..+|...|+..|.+.++-+. +.-.....+|||.++.|..+.... ++.+-+..++
T Consensus 148 GQ~f~----~~~l~kI~~l~~~~~~~~I~VDGGIn~---~~i~~l~~aGad~~V~GS~if~~~--d~~~~i~~lr 213 (220)
T d1h1ya_ 148 GQKFM----PEMMEKVRALRKKYPSLDIEVDGGLGP---STIDVAASAGANCIVAGSSIFGAA--EPGEVISALR 213 (220)
T ss_dssp SCCCC----GGGHHHHHHHHHHCTTSEEEEESSCST---TTHHHHHHHTCCEEEESHHHHTSS--CHHHHHHHHH
T ss_pred ccccc----hhhhHHHHHHHhcCCCceEEEEecCCH---HHHHHHHHCCCCEEEECHHHHCCC--CHHHHHHHHH
Confidence 22222 234444566788899988888776543 233455789999999998765433 3455555444
|
| >d1tqja_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Synechocystis sp. PCC 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Probab=95.56 E-value=0.053 Score=51.90 Aligned_cols=201 Identities=12% Similarity=0.051 Sum_probs=117.5
Q ss_pred CHHHHHHHHHHHHHCCCCEEEE--eeccC-CCCcccHHHHHHHHHHHHh-cCcEeEEecCCC-CHHHHHHHHHhCCCeEe
Q psy8199 716 SIESVITAAQKAKSDGATRFCM--GAAWR-ELKDRDLDNIENMICEVKK-IGLETCLTLGML-NENQAYRLKKVGLDYYN 790 (965)
Q Consensus 716 ~~eei~~~~~~~~~~g~~~i~l--~~g~~-~~~~~~~~~~~~~~~~i~~-~~~~i~~~~~~~-~~e~l~~Lk~aG~~~i~ 790 (965)
+...+.++++.+.+.|+..+++ .+|.+ |....+. +.++.+++ ....+-++.=.. ....++.+.++|.+.+.
T Consensus 13 d~~~l~~~i~~l~~~g~d~iHiDImDG~Fvpn~t~~~----~~~~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~~~i~ 88 (221)
T d1tqja_ 13 DFSRLGEEIKAVDEAGADWIHVDVMDGRFVPNITIGP----LIVDAIRPLTKKTLDVHLMIVEPEKYVEDFAKAGADIIS 88 (221)
T ss_dssp CGGGHHHHHHHHHHTTCSEEEEEEEBSSSSSCBCBCH----HHHHHHGGGCCSEEEEEEESSSGGGTHHHHHHHTCSEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECccCCccCccccCc----HhHHhhhhccCcceeeeEEEeCHHHHHHHHhhccceEEE
Confidence 4556777777777888887655 55655 3222333 24444554 344443332222 24578999999999999
Q ss_pred ccCCC-CHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccccccCCC
Q psy8199 791 HNLDT-SPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGT 869 (965)
Q Consensus 791 i~~es-~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT 869 (965)
+-+|+ +. .+..+.++.+++.|++++. -+......+++...+ .. .+.+-++.. .||-
T Consensus 89 ~H~E~~~~------------~~~~~~~~~i~~~g~~~Gi--al~p~T~~~~l~~~l---~~----~d~vlvM~V--~pG~ 145 (221)
T d1tqja_ 89 VHVEHNAS------------PHLHRTLCQIRELGKKAGA--VLNPSTPLDFLEYVL---PV----CDLILIMSV--NPGF 145 (221)
T ss_dssp EECSTTTC------------TTHHHHHHHHHHTTCEEEE--EECTTCCGGGGTTTG---GG----CSEEEEESS--CC--
T ss_pred EeeccccC------------hhhHHHHHHHHHCCCCEEE--EecCCCcHHHHHHHH---hh----hcEEEEEEe--cCCC
Confidence 99886 31 1246777888899987754 343444444433322 22 466766644 3554
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeCCccccCCCCCChhhHHHHHHcC
Q psy8199 870 PLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLLKKLG 948 (965)
Q Consensus 870 ~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~~~~~g 948 (965)
.=+...+...+.+.++....+..-++..|.+.++-+. +.-.....+|||.++.|..+.... ++.+.+..+++..
T Consensus 146 ~GQ~f~~~~~~ki~~l~~~~~~~~~~~~I~VDGGIn~---~~i~~l~~~Gad~~V~GS~if~~~--d~~~~i~~lr~~~ 219 (221)
T d1tqja_ 146 GGQSFIPEVLPKIRALRQMCDERGLDPWIEVDGGLKP---NNTWQVLEAGANAIVAGSAVFNAP--NYAEAIAGVRNSK 219 (221)
T ss_dssp --CCCCGGGHHHHHHHHHHHHHHTCCCEEEEESSCCT---TTTHHHHHHTCCEEEESHHHHTSS--CHHHHHHHHHTCC
T ss_pred CCcccchhhHHHHHHHHhhhhccccceEEEEECCcCH---HHHHHHHHcCCCEEEEChHHhCCC--CHHHHHHHHHhcc
Confidence 3222333344555555555555566666777766543 223355789999999997655433 4677777776543
|
| >d1jvna1 c.1.2.1 (A:230-552) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]
Probab=95.47 E-value=0.26 Score=49.55 Aligned_cols=222 Identities=14% Similarity=0.043 Sum_probs=141.2
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEeeccCC-CCcccHHHHHHHHHHHHh-cCcEeEEecCCCC-----------HHHHHHHH
Q psy8199 716 SIESVITAAQKAKSDGATRFCMGAAWRE-LKDRDLDNIENMICEVKK-IGLETCLTLGMLN-----------ENQAYRLK 782 (965)
Q Consensus 716 ~~eei~~~~~~~~~~g~~~i~l~~g~~~-~~~~~~~~~~~~~~~i~~-~~~~i~~~~~~~~-----------~e~l~~Lk 782 (965)
..-+.++.++.+.+.|++++++++-... .....-..+.++++.+.+ ..++++.-.|..+ .|.+++|-
T Consensus 46 ~iGdP~~~a~~~~~~gaDeL~ivDidas~~~~~~~~~~~~~I~~i~~~~~vPi~vGGGIrsi~di~~~~~~~~e~A~~ll 125 (323)
T d1jvna1 46 NLGKPVQLAQKYYQQGADEVTFLNITSFRDCPLKDTPMLEVLKQAAKTVFVPLTVGGGIKDIVDVDGTKIPALEVASLYF 125 (323)
T ss_dssp -CHHHHHHHHHHHHTTCSEEEEEEEC---CCCGGGCHHHHHHHHHTTTCCSCEEEESSCSCEECTTCCEECHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHCCCCEEEEEECcCCCCCcCCCchHHHHHHhhccccceeEEEecCcccHHHhhhccchhhHHHHHHH
Confidence 3457788888899999999999764321 011122456788887764 7899999888776 57789999
Q ss_pred HhCCCeEeccCCC--CHHHHhcccCC-CCHHHHHHHHHHHHHcCCceeeeEE----------------------------
Q psy8199 783 KVGLDYYNHNLDT--SPKLYGDIIST-RDYENRLNTLKNVRNVGINICCGGI---------------------------- 831 (965)
Q Consensus 783 ~aG~~~i~i~~es--~~~~~~~i~~~-~~~~~~~~~i~~~~~~Gi~v~~~~i---------------------------- 831 (965)
++|++++.++=.. +|+.+.++... .+++-..++.+...+.-+-++..+.
T Consensus 126 ~~GadKVvI~T~ai~~p~~~~e~~~~~~n~~li~~i~~~fGsq~IvvsiD~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (323)
T d1jvna1 126 RSGADKVSIGTDAVYAAEKYYELGNRGDGTSPIETISKAYGAQAVVISVDPKRVYVNSQADTKNKVFETEYPGPNGEKYC 205 (323)
T ss_dssp HHTCSEEEECHHHHHHHHHHHHTTSCCCSCSHHHHHHHHHCGGGEEEEECEEEEEESSGGGCSSCCEECSSCCTTCCCEE
T ss_pred HcCCCeEEechHHhhChHHHHHHHhhcccchhHHHHHHHhCCceEEEEEEEEeccccccccccccccccccccCCCccce
Confidence 9999999999666 67888777653 3444445555444433233333322
Q ss_pred ----EecC---CCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccc
Q psy8199 832 ----IGLS---ESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGR 904 (965)
Q Consensus 832 ----~Gl~---et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~ 904 (965)
+=.| .|.-++.+.++.+.+++ ...+-++ -+-..||. .. ++.+- +...+...+ ..+-++++-
T Consensus 206 ~y~v~~~gg~~~t~~~l~~~i~~~~~~G--~GEIllt-dIdrDGt~-~G---~D~el----~~~i~~~~~-iPiIasGGi 273 (323)
T d1jvna1 206 WYQCTIKGGRESRDLGVWELTRACEALG--AGEILLN-CIDKDGSN-SG---YDLEL----IEHVKDAVK-IPVIASSGA 273 (323)
T ss_dssp EEEEEETTTTEEEEEEHHHHHHHHHHTT--CCEEEEC-CGGGTTTC-SC---CCHHH----HHHHHHHCS-SCEEECSCC
T ss_pred eEEEEEcCCeEecCchHHHHhhhhhccC--cceeEEE-eecccccc-cc---cchhH----HHHHHHhCC-CCEEEECCC
Confidence 2122 33447888899999999 7777666 34457773 22 23332 222333343 335566665
Q ss_pred cccchhhHHHHhhcCccEEeeCCccccCCCCCChhhHHHHHHcCCCc
Q psy8199 905 KEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLLKKLGINT 951 (965)
Q Consensus 905 ~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~~~~~g~~~ 951 (965)
..+ .++....-..|++++++|..+... ..+..+..+.|...|+..
T Consensus 274 ~s~-~di~~ll~~~~v~gv~~gs~~~~~-~~si~elK~~L~~~~i~v 318 (323)
T d1jvna1 274 GVP-EHFEEAFLKTRADACLGAGMFHRG-EFTVNDVKEYLLEHGLKV 318 (323)
T ss_dssp CSH-HHHHHHHHHSCCSEEEESHHHHTT-SCCHHHHHHHHHHTTCCC
T ss_pred CCH-HHHHHHHHhCCCeEEEEhhHHHcC-CCCHHHHHHHHHHCCCcc
Confidence 544 445444335689999999866444 347889999999988865
|
| >d1rqba2 c.1.10.5 (A:4-306) Transcarboxylase 5S subunit, N-terminal domain {Propionibacterium freudenreichii shermanii [TaxId: 1752]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: HMGL-like domain: Transcarboxylase 5S subunit, N-terminal domain species: Propionibacterium freudenreichii shermanii [TaxId: 1752]
Probab=95.05 E-value=0.12 Score=52.33 Aligned_cols=210 Identities=13% Similarity=0.155 Sum_probs=129.4
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEeeccCC-----CC-cccHHHHHHHHHHHHhcCcEeEEec------CCCCH----HHH
Q psy8199 715 LSIESVITAAQKAKSDGATRFCMGAAWRE-----LK-DRDLDNIENMICEVKKIGLETCLTL------GMLNE----NQA 778 (965)
Q Consensus 715 ~~~eei~~~~~~~~~~g~~~i~l~~g~~~-----~~-~~~~~~~~~~~~~i~~~~~~i~~~~------~~~~~----e~l 778 (965)
++.++.++.++.+.+.|++.+-+.++..+ .. ..+.+......+..+...+...... ..... ...
T Consensus 30 ~~~~~ki~i~~~L~~~Gv~~IEvg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (303)
T d1rqba2 30 MAMEDMVGACADIDAAGYWSVECWGGATYDSCIRFLNEDPWERLRTFRKLMPNSRLQMLLRGQNLLGYRHYNDEVVDRFV 109 (303)
T ss_dssp CCGGGTGGGHHHHHHTTCSEEEEEETTHHHHHHHTSCCCHHHHHHHHHHHCTTSCEEEEECGGGTTSSSCCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCcChHHHHHHhcCchHHHHHHHHhhhhhHHHHHHhcccccccccccchhhhHHHH
Confidence 67888888899999999999998665321 01 1112222222222222233333221 11122 223
Q ss_pred HHHHHhCCCeEeccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEec--CCCHHHHHHHHHHHHhcCCCCC
Q psy8199 779 YRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL--SESRDQRAELIFQLANLNPYPE 856 (965)
Q Consensus 779 ~~Lk~aG~~~i~i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl--~et~ed~~~~l~~l~~l~~~~~ 856 (965)
....+.+.+.+.. .......+....+++.+++.|..+...+.... ..+.+.+.+.++.+.+.+ ++
T Consensus 110 ~~~~~~~~~~~r~-----------~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G--~~ 176 (303)
T d1rqba2 110 DKSAENGMDVFRV-----------FDAMNDPRNMAHAMAAVKKAGKHAQGTICYTISPVHTVEGYVKLAGQLLDMG--AD 176 (303)
T ss_dssp HHHHHTTCCEEEE-----------CCTTCCTHHHHHHHHHHHHTTCEEEEEEECCCSTTCCHHHHHHHHHHHHHTT--CS
T ss_pred HHHHHhhhhHHhh-----------hhhHHHHHHHHHHHHHHHHcCCeEEEEEEecCCCCCCHHHHHHHHHHHHhcC--Cc
Confidence 3333344433322 22234567788899999999998776666555 378899999999999999 78
Q ss_pred ceeeccccccCCCCCCCCCCCCHHHHHHHHHHHHHHC-CCCceeccccccccch--hhHHHHhhcCccEEe-----eCCc
Q psy8199 857 SVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITM-PTSRIRMSAGRKEMGE--TTQAFCFLAGANSIF-----YGDK 928 (965)
Q Consensus 857 ~i~~~~~~P~~gT~l~~~~~~~~~~~~~~ia~~R~~l-p~~~i~i~~~~~~~~~--~~~~~~l~~Gan~~~-----~g~~ 928 (965)
.|.+. .| ....+|.++.+++...|..+ |+..+.+-++ ++.+. .-...|+.+||+.+= .|+
T Consensus 177 ~i~l~------DT----~G~~~P~~v~~li~~l~~~~~~~i~i~~H~H-nd~Gla~AN~laA~~aG~~~id~ti~GlG~- 244 (303)
T d1rqba2 177 SIALK------DM----AALLKPQPAYDIIKAIKDTYGQKTQINLHCH-STTGVTEVSLMKAIEAGVDVVDTAISSMSL- 244 (303)
T ss_dssp EEEEE------ET----TCCCCHHHHHHHHHHHHHHHCTTCCEEEEEB-CTTSCHHHHHHHHHHTTCSEEEEBCGGGCS-
T ss_pred EEeec------Cc----cchhhhHHHHHHHHHHHhhcCCcccceeccC-chHHHHHHHHHHHHHcCCCEEEECCccCCC-
Confidence 77655 44 24468899999999999877 5554544432 22222 234568999999532 223
Q ss_pred cccCCCCCChhhHHHHHHcCCCc
Q psy8199 929 LLTTDNTKTNDDSKLLKKLGINT 951 (965)
Q Consensus 929 ~~t~~~~~~~~~~~~~~~~g~~~ 951 (965)
.+++...++...+|+.+|+.+
T Consensus 245 --~~GN~~te~lv~~L~~~g~~t 265 (303)
T d1rqba2 245 --GPGHNPTESVAEMLEGTGYTT 265 (303)
T ss_dssp --TTSBCBHHHHHHHTTTSSEEC
T ss_pred --CCCCccHHHHHHHHHhcCCCC
Confidence 334557888999999999874
|
| >d1thfd_ c.1.2.1 (D:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermotoga maritima [TaxId: 2336]
Probab=94.29 E-value=0.66 Score=45.11 Aligned_cols=202 Identities=17% Similarity=0.166 Sum_probs=127.7
Q ss_pred HHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHh-cCcEeEEecCCCCHHHHHHHHHhCCCeEeccCCC--C
Q psy8199 720 VITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDT--S 796 (965)
Q Consensus 720 i~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~-~~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~~es--~ 796 (965)
.++.++.+.+.|+.++++..-... ........++++.+.+ .++++..-.|..+.+.++.+.++|++++.++-.+ +
T Consensus 32 P~~~a~~~~~~g~dei~ivDld~~--~~~~~~~~~~i~~i~~~~~~pi~vgGGIr~~e~i~~~l~~Ga~kviigs~~~~n 109 (253)
T d1thfd_ 32 PVELGKFYSEIGIDELVFLDITAS--VEKRKTMLELVEKVAEQIDIPFTVGGGIHDFETASELILRGADKVSINTAAVEN 109 (253)
T ss_dssp HHHHHHHHHHTTCCEEEEEESSCS--SSHHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHTTCSEEEESHHHHHC
T ss_pred HHHHHHHHHHcCCCEEEEEeeccc--ccCcccHHHHHHHHHhccCccceeecccccchhhhhHHhcCCCEEEEChHHhhC
Confidence 455667777889999999886433 2334556778877775 6889999999999999999999999999998533 2
Q ss_pred HHHHhcccCCCCHHHHHHHHHHHHHcCCceee--------eEEEecC---CCHHHHHHHHHHHHhcCCCCCceeeccccc
Q psy8199 797 PKLYGDIISTRDYENRLNTLKNVRNVGINICC--------GGIIGLS---ESRDQRAELIFQLANLNPYPESVPINNLVQ 865 (965)
Q Consensus 797 ~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~--------~~i~Gl~---et~ed~~~~l~~l~~l~~~~~~i~~~~~~P 865 (965)
++. ..++.+.....-+-+.. ..++..+ .+.-+..+.+..+.+++ +..+-++ -+-
T Consensus 110 ~~~------------l~~~~~~~G~~~iv~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~eii~t-dI~ 174 (253)
T d1thfd_ 110 PSL------------ITQIAQTFGSQAVVVAIDAKRVDGEFMVFTYSGKKNTGILLRDWVVEVEKRG--AGEILLT-SID 174 (253)
T ss_dssp THH------------HHHHHHHHCGGGEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHHHHTT--CSEEEEE-ETT
T ss_pred hHH------------HHHHHHHcCCeeEEEeeeecccCCceeeeeeecccccchhHHHHHHHHHhcc--CCEEEEE-Eec
Confidence 222 22233333222122221 2344443 23345677788888888 6666554 244
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeCCccccCCCCCChhhHHHHH
Q psy8199 866 IKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLLK 945 (965)
Q Consensus 866 ~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~~~ 945 (965)
..||- . .++.+ +++.+ +.. .+..+-++++-... .++..+ +..|++++++|..+ ..+..+.++..+.+.
T Consensus 175 ~dGt~-~---G~d~~-ll~~i---~~~-~~~pvi~~GGv~s~-~di~~l-~~~g~~gvivgsal-~~~~~~~~~~k~~l~ 242 (253)
T d1thfd_ 175 RDGTK-S---GYDTE-MIRFV---RPL-TTLPIIASGGAGKM-EHFLEA-FLAGADAALAASVF-HFREIDVRELKEYLK 242 (253)
T ss_dssp TTTSC-S---CCCHH-HHHHH---GGG-CCSCEEEESCCCSH-HHHHHH-HHTTCSEEEESHHH-HTTCSCHHHHHHHHH
T ss_pred ccCcc-C---Ccccc-ccccc---ccc-ccceEEEecCCCCH-HHHHHH-HHCCCCEEEEchHH-HcCCCCHHHHHHHHH
Confidence 56762 1 12333 33322 222 34445555555443 444444 67899999999855 444457899999999
Q ss_pred HcCCC
Q psy8199 946 KLGIN 950 (965)
Q Consensus 946 ~~g~~ 950 (965)
..|+.
T Consensus 243 ~~~i~ 247 (253)
T d1thfd_ 243 KHGVN 247 (253)
T ss_dssp HTTCC
T ss_pred HCCCc
Confidence 98874
|
| >d1tqxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Plasmodium falciparum [TaxId: 5833]
Probab=93.79 E-value=0.13 Score=49.20 Aligned_cols=198 Identities=14% Similarity=0.075 Sum_probs=113.5
Q ss_pred CHHHHHHHHHHHHHCCCCE--EEEeeccC-CCCcccHHHHHHHHHHHHh--cCcEeEEecCCCCH-HHHHHHHHhCCCeE
Q psy8199 716 SIESVITAAQKAKSDGATR--FCMGAAWR-ELKDRDLDNIENMICEVKK--IGLETCLTLGMLNE-NQAYRLKKVGLDYY 789 (965)
Q Consensus 716 ~~eei~~~~~~~~~~g~~~--i~l~~g~~-~~~~~~~~~~~~~~~~i~~--~~~~i~~~~~~~~~-e~l~~Lk~aG~~~i 789 (965)
+.-.+.++++++.+.|+.. +-+.+|.+ |....+.+ .++.+++ ..+.+-++.-..++ ..++.+.++|.+.+
T Consensus 13 d~~~l~~~i~~l~~~~~d~iHiDimDG~Fvpn~t~g~~----~v~~i~~~~~~~~~dvHLMv~~P~~~i~~~~~~~~~~i 88 (221)
T d1tqxa_ 13 NISKLAEETQRMESLGAEWIHLDVMDMHFVPNLSFGPP----VINNLKKYTKSIFFDVHLMVEYPEKYVPLLKTSNQLTF 88 (221)
T ss_dssp CGGGHHHHHHHHHHTTCSEEEEEEEBSSSSSCBCCCHH----HHHHHGGGCSSCEEEEEEESSCGGGGGGGCTTSSEEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECccCcCcCccccChH----HHhhhhhcCCchhhhhhHHhhhhhhhhhhhhhcCceeE
Confidence 4456667777777888886 55556655 32222333 4445554 23444443322222 34567777887766
Q ss_pred eccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccccccCCC
Q psy8199 790 NHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGT 869 (965)
Q Consensus 790 ~i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT 869 (965)
.+-.++ .+..+.++.++.++++|.+++. -+......+.+...+ .... .+.|-++.. .||-
T Consensus 89 ~~~~~~-----------~~~~~~~~~i~~i~~~g~~~Gi--al~p~t~~~~~~~~l---~~~~--~d~vlim~V--~pG~ 148 (221)
T d1tqxa_ 89 HFEALN-----------EDTERCIQLAKEIRDNNLWCGI--SIKPKTDVQKLVPIL---DTNL--INTVLVMTV--EPGF 148 (221)
T ss_dssp EGGGGT-----------TCHHHHHHHHHHHHTTTCEEEE--EECTTSCGGGGHHHH---TTTC--CSEEEEESS--CTTC
T ss_pred Eeehhc-----------cccchhhHHHHHHHhcCCeEEE--eeccccccccchhhc---cccc--ccEEEEEee--cccc
Confidence 655433 2345677888999999988754 333333334333322 2222 566766633 4563
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeCCccccCCCCCChhhHHHHHH
Q psy8199 870 PLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLLKK 946 (965)
Q Consensus 870 ~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~~~~ 946 (965)
.=+... ++.++-+..+|...|+..|.+.++-+. +.-.....+|||.++.|..+.... ++.+.++.|++
T Consensus 149 ~GQ~f~----~~~l~KI~~lr~~~~~~~I~VDGGIn~---~~i~~l~~aGad~iV~GS~if~~~--d~~~~i~~Lr~ 216 (221)
T d1tqxa_ 149 GGQSFM----HDMMGKVSFLRKKYKNLNIQVDGGLNI---ETTEISASHGANIIVAGTSIFNAE--DPKYVIDTMRV 216 (221)
T ss_dssp SSCCCC----GGGHHHHHHHHHHCTTCEEEEESSCCH---HHHHHHHHHTCCEEEESHHHHTCS--SHHHHHHHHHH
T ss_pred cccccC----cchhHHHHHHHHhcCCcceEEEcccCH---HhHHHHHHcCCCEEEEChHHHCCC--CHHHHHHHHHH
Confidence 211111 244555566788899888877765533 334456789999999998665433 45666665554
|
| >d1ad1a_ c.1.21.1 (A:) Dihydropteroate synthetase {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Dihydropteroate synthetase-like family: Dihydropteroate synthetase domain: Dihydropteroate synthetase species: Staphylococcus aureus [TaxId: 1280]
Probab=93.35 E-value=0.47 Score=46.20 Aligned_cols=137 Identities=17% Similarity=0.227 Sum_probs=91.6
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEeeccCCCC------cccHHHHHHHHHHHHhcCcEeEEecCCCCHHHHHHHHHhCCC
Q psy8199 714 ILSIESVITAAQKAKSDGATRFCMGAAWRELK------DRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLD 787 (965)
Q Consensus 714 ~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~------~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~e~l~~Lk~aG~~ 787 (965)
..++++.++.++++.+.|+.-+-+.+-...+. ...++++...++.+++.++ .+++.....++++...++|++
T Consensus 22 ~~~~~~a~~~~~~m~~~GAdiIDIGaeSTrPga~~is~~eE~~Rl~pvi~~l~~~~~--~iSIDT~~~eVa~~al~~Ga~ 99 (264)
T d1ad1a_ 22 FNNVESAVTRVKAMMDEGADIIDVGGVSTRPGHEMITVEEELNRVLPVVEAIVGFDV--KISVDTFRSEVAEACLKLGVD 99 (264)
T ss_dssp TCSHHHHHHHHHHHHHTTCSEEEEESCCCSTTCCCCCHHHHHHHHHHHHHHHTTSSS--EEEEECSCHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCccCCCCCCcCCHHHHHHhhhhHhhhhcccCc--ccchhhhhHHHHHHHHhcCCc
Confidence 46899999999999999999999976443221 2346778888887776554 556777789999999999999
Q ss_pred eEe-c-cCCCCHHHHhcccC----------C---C---CHH----HHHHHHHHHHHcCCcee-eeEEEec--CCCHHHHH
Q psy8199 788 YYN-H-NLDTSPKLYGDIIS----------T---R---DYE----NRLNTLKNVRNVGINIC-CGGIIGL--SESRDQRA 842 (965)
Q Consensus 788 ~i~-i-~~es~~~~~~~i~~----------~---~---~~~----~~~~~i~~~~~~Gi~v~-~~~i~Gl--~et~ed~~ 842 (965)
.|+ + +...+++.++-+.. . . .++ ...+-++.+.++|+.-. .-+=.|+ |-|.++=.
T Consensus 100 iINDVs~g~~d~~~~~~va~~~~~~ilmH~~~~~~~~~~~~~v~~~~~~~~~~~~~~Gi~~~~IilDPGiGFgKt~~~n~ 179 (264)
T d1ad1a_ 100 IINDQWAGLYDHRMFQVVAKYDAEIVLMHNGNGNRDEPVVEEMLTSLLAQAHQAKIAGIPSNKIWLDPGIGFAKTRNEEA 179 (264)
T ss_dssp EEEETTTTSSCTHHHHHHHHTTCEEEEECCCCTTCCSCHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCTTSSCCHHHHH
T ss_pred EeeccccccccccHHHHHhhcCcceeeeeeccccccCccchhhhhHHHHHHHHHHhhccccceEEeccCcCccccchhHH
Confidence 998 5 44556666543321 1 0 122 33445566888998432 2222344 58888776
Q ss_pred HHHHHHHhcC
Q psy8199 843 ELIFQLANLN 852 (965)
Q Consensus 843 ~~l~~l~~l~ 852 (965)
+.++.+..+.
T Consensus 180 ~ll~~l~~~~ 189 (264)
T d1ad1a_ 180 EVMARLDELV 189 (264)
T ss_dssp HHHHCHHHHH
T ss_pred HHHHHHHHhh
Confidence 6666665543
|
| >d1h5ya_ c.1.2.1 (A:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=93.34 E-value=1.4 Score=42.47 Aligned_cols=203 Identities=13% Similarity=0.139 Sum_probs=123.5
Q ss_pred HHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHh-cCcEeEEecCCCCHHHHHHHHHhCCCeEeccCCC--C
Q psy8199 720 VITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDT--S 796 (965)
Q Consensus 720 i~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~-~~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~~es--~ 796 (965)
.++.++.+.+.|++++++.+-..... ......++++.+.+ ..+++.+-.|..+.+.++.|.++|++++.++-.. +
T Consensus 34 P~~~a~~~~~~gadei~ivDl~~~~~--~~~~~~~~i~~i~~~~~~pi~~gGGIr~~e~~~~ll~~G~~kVii~s~~~~~ 111 (252)
T d1h5ya_ 34 PVEMAVRYEEEGADEIAILDITAAPE--GRATFIDSVKRVAEAVSIPVLVGGGVRSLEDATTLFRAGADKVSVNTAAVRN 111 (252)
T ss_dssp HHHHHHHHHHTTCSCEEEEECCCCTT--THHHHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHHC
T ss_pred HHHHHHHHHHCCCCEEEEEecccccc--ccccHHHHHHHHHhhcCCcceeecccchhhhhhhHhhcCCcEEEecccccCC
Confidence 44566777789999999988654422 23344566666654 6889999999999999999999999999988433 2
Q ss_pred HHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeE--------EEecCC---CHHHHHHHHHHHHhcCCCCCceeeccccc
Q psy8199 797 PKLYGDIISTRDYENRLNTLKNVRNVGINICCGG--------IIGLSE---SRDQRAELIFQLANLNPYPESVPINNLVQ 865 (965)
Q Consensus 797 ~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~--------i~Gl~e---t~ed~~~~l~~l~~l~~~~~~i~~~~~~P 865 (965)
++.. .++.+...+.-+-++..+ ++-.+. +.-+..+.++.+.+++ +..+-++ -+-
T Consensus 112 ~~~~------------~~~~~~~G~q~iv~slD~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g--~~eii~t-dI~ 176 (252)
T d1h5ya_ 112 PQLV------------ALLAREFGSQSTVVAIDAKWNGEYYEVYVKGGREATGLDAVKWAKEVEELG--AGEILLT-SID 176 (252)
T ss_dssp THHH------------HHHHHHHCGGGEEEEEEEEECSSSEEEEETTTTEEEEEEHHHHHHHHHHHT--CSEEEEE-ETT
T ss_pred cchH------------HHHHHhcCCCcEEEEEEEEEcCCcEEEEEeCCeEcCCCCHHHHHHHHHhcC--CCEEEEE-eec
Confidence 2222 222222222112222222 222221 1124566777888888 6666554 345
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeCCccccCCCCCChhhHHHHH
Q psy8199 866 IKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLLK 945 (965)
Q Consensus 866 ~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~~~ 945 (965)
..||- ..++.+ .++.+ +...+ ..+-++++-..+ .++..+ ...|++++.+|..+ ..+..+..+..+.++
T Consensus 177 ~dG~~----~G~d~~-~~~~i---~~~~~-~pii~~GGv~~~-~di~~l-~~~g~~gv~~gs~l-~~~~~~~~~lk~~l~ 244 (252)
T d1h5ya_ 177 RDGTG----LGYDVE-LIRRV---ADSVR-IPVIASGGAGRV-EHFYEA-AAAGADAVLAASLF-HFRVLSIAQVKRYLK 244 (252)
T ss_dssp TTTTC----SCCCHH-HHHHH---HHHCS-SCEEEESCCCSH-HHHHHH-HHTTCSEEEESHHH-HTTSSCHHHHHHHHH
T ss_pred ccCcc----CCcCHH-HHHHH---HHhcC-CCEEEecCCCCH-HHHHHH-HHCCCCEEEEhhHH-HcCCCCHHHHHHHHH
Confidence 56762 122333 33333 22333 335555555443 455543 67899999999755 444457889999999
Q ss_pred HcCCCc
Q psy8199 946 KLGINT 951 (965)
Q Consensus 946 ~~g~~~ 951 (965)
..|+..
T Consensus 245 ~~~i~v 250 (252)
T d1h5ya_ 245 ERGVEV 250 (252)
T ss_dssp HTTCBC
T ss_pred HcCCcc
Confidence 888754
|
| >d1ka9f_ c.1.2.1 (F:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermus thermophilus [TaxId: 274]
Probab=93.19 E-value=0.13 Score=50.41 Aligned_cols=200 Identities=16% Similarity=0.159 Sum_probs=123.9
Q ss_pred HHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHh-cCcEeEEecCCCCHHHHHHHHHhCCCeEeccCCC--C
Q psy8199 720 VITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDT--S 796 (965)
Q Consensus 720 i~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~-~~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~~es--~ 796 (965)
.++.++.+.+.|+++++++.-.... .......++++.+.+ ..++++.-.|..+.+.++.|.++|++++.++-.+ +
T Consensus 32 P~~~a~~~~~~g~dei~iiDl~~~~--~~~~~~~~~i~~i~~~~~~pi~vgGGIrs~e~~~~ll~~Ga~kVii~s~~~~n 109 (251)
T d1ka9f_ 32 PVEAARAYDEAGADELVFLDISATH--EERAILLDVVARVAERVFIPLTVGGGVRSLEDARKLLLSGADKVSVNSAAVRR 109 (251)
T ss_dssp HHHHHHHHHHHTCSCEEEEECCSST--TCHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHC
T ss_pred HHHHHHHHHHcCCCEEEEEeccccc--ccchhHHHHHHHHHhccCcchheeccccCHHHHHHHHHcCCCEEEECchhhhC
Confidence 3445566667799999998865432 223456677777765 6789999999999999999999999999988433 2
Q ss_pred HHHHhcccCCCCHHHHHHHHHHHHHcCCce-e----------eeEEEecCC---CHHHHHHHHHHHHhcCCCCCceeecc
Q psy8199 797 PKLYGDIISTRDYENRLNTLKNVRNVGINI-C----------CGGIIGLSE---SRDQRAELIFQLANLNPYPESVPINN 862 (965)
Q Consensus 797 ~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v-~----------~~~i~Gl~e---t~ed~~~~l~~l~~l~~~~~~i~~~~ 862 (965)
++.. .+ .++..|-.. . -..++..|. +.-+..+.+..+.+++ +..+-++-
T Consensus 110 ~~~i------------~~---~~~~~G~q~iv~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~eii~td 172 (251)
T d1ka9f_ 110 PELI------------RE---LADHFGAQAVVLAIDARWRGDFPEVHVAGGRVPTGLHAVEWAVKGVELG--AGEILLTS 172 (251)
T ss_dssp THHH------------HH---HHHHHCGGGEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHHHHHT--CCEEEEEE
T ss_pred HHHH------------HH---HHHhhcccccccccchhhcccceEEEeccceecCCccHHHHHHHHHhcC--CCEEEEEe
Confidence 3222 22 223334311 1 122333332 2235667778888888 66666552
Q ss_pred ccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeCCccccCCCCCChhhHH
Q psy8199 863 LVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSK 942 (965)
Q Consensus 863 ~~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~ 942 (965)
+-..||- .. ++. ++++. .+...+ ..+-++++-... .++. .++..|++++++|..+ ..+..+..+..+
T Consensus 173 -i~~dG~~-~G---~d~-~l~~~---i~~~~~-~pii~~GGv~~~-~dl~-~l~~~g~~gviig~al-~~g~~~~~~~k~ 239 (251)
T d1ka9f_ 173 -MDRDGTK-EG---YDL-RLTRM---VAEAVG-VPVIASGGAGRM-EHFL-EAFQAGAEAALAASVF-HFGEIPIPKLKR 239 (251)
T ss_dssp -TTTTTTC-SC---CCH-HHHHH---HHHHCS-SCEEEESCCCSH-HHHH-HHHHTTCSEEEESHHH-HTTSSCHHHHHH
T ss_pred -ecccCcc-CC---cch-hHHHH---HHhhcc-eeEEEecCCCCH-HHHH-HHHHCCCCEEEEhHHH-HcCCCCHHHHHH
Confidence 3446762 22 232 33332 333333 335555554443 3443 3467899999999855 444457889999
Q ss_pred HHHHcCCCc
Q psy8199 943 LLKKLGINT 951 (965)
Q Consensus 943 ~~~~~g~~~ 951 (965)
.+.+.|+..
T Consensus 240 ~l~~~~i~v 248 (251)
T d1ka9f_ 240 YLAEKGVHV 248 (251)
T ss_dssp HHHHTTCCB
T ss_pred HHHHCCCcc
Confidence 999888754
|
| >d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydropyrimidine dehydrogenase, domain 4 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=91.69 E-value=2.3 Score=42.53 Aligned_cols=179 Identities=13% Similarity=0.087 Sum_probs=95.9
Q ss_pred CcccHHHHHHHHHHHHhc---CcEeEEecCCCCHH----HHHHHHHhCCCeEeccCCC-CHHHHhcccC--CCCHHHHHH
Q psy8199 745 KDRDLDNIENMICEVKKI---GLETCLTLGMLNEN----QAYRLKKVGLDYYNHNLDT-SPKLYGDIIS--TRDYENRLN 814 (965)
Q Consensus 745 ~~~~~~~~~~~~~~i~~~---~~~i~~~~~~~~~e----~l~~Lk~aG~~~i~i~~es-~~~~~~~i~~--~~~~~~~~~ 814 (965)
.....+++++.++.++.. +..+..+....+.+ ..+.+.++|+|.+.+++.. +....+.... ..+.+...+
T Consensus 82 ~~~g~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~~~~~~gad~lelN~scPn~~~~~~~~~~~~~~~~~~~~ 161 (312)
T d1gtea2 82 SEKTAAYWCQSVTELKADFPDNIVIASIMCSYNKNDWMELSRKAEASGADALELNLSCPHGMGERGMGLACGQDPELVRN 161 (312)
T ss_dssp CSSCHHHHHHHHHHHHHHCTTSEEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCBCCCC-----SBGGGCHHHHHH
T ss_pred cccchhhhhhhhccccccccccccccccccccchhHHHHHHHHhccCCCCeEeeccCCCCcccccccchhhhhhHHHHHH
Confidence 345677777777777652 22333333333343 3445567799999999876 4222222211 235666666
Q ss_pred HHHHHHHc-CCceeeeEEEecC-CCHHHHHHHHHHHHhcCCCCCceeec-cccccCCCCCCCC-----------------
Q psy8199 815 TLKNVRNV-GINICCGGIIGLS-ESRDQRAELIFQLANLNPYPESVPIN-NLVQIKGTPLYGS----------------- 874 (965)
Q Consensus 815 ~i~~~~~~-Gi~v~~~~i~Gl~-et~ed~~~~l~~l~~l~~~~~~i~~~-~~~P~~gT~l~~~----------------- 874 (965)
.++.+++. .+++..- ++.. ++ ..+.++.+.+.+ .+.+.+. .+....+......
T Consensus 162 i~~~v~~~~~~pv~vK--l~~~~~~---~~~i~~~~~~~g--~~gi~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~gg~s 234 (312)
T d1gtea2 162 ICRWVRQAVQIPFFAK--LTPNVTD---IVSIARAAKEGG--ADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVS 234 (312)
T ss_dssp HHHHHHHHCSSCEEEE--ECSCSSC---HHHHHHHHHHHT--CSEEEECCCEEECCCBCTTSCBSSCBTTTTBBCCEEEE
T ss_pred HHHHHhhccCCceeec--ccccchh---HHHHHHHHHHhc--ccceEEEeeccccccccccccccccccccccccccccc
Confidence 77777664 3444332 2232 33 345556667777 5555432 2222222111111
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeCCccccC
Q psy8199 875 SILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTT 932 (965)
Q Consensus 875 ~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~~t~ 932 (965)
.+.-....++.+...|...|...|-..++- ..+.+.. .++.+||+.+.++..++..
T Consensus 235 G~~i~~~al~~v~~~~~~~~~ipIi~~GGI-~~~~d~~-~~l~aGA~~Vqv~ta~~~~ 290 (312)
T d1gtea2 235 GTAIRPIALRAVTTIARALPGFPILATGGI-DSAESGL-QFLHSGASVLQVCSAVQNQ 290 (312)
T ss_dssp SGGGHHHHHHHHHHHHHHSTTCCEEEESSC-CSHHHHH-HHHHTTCSEEEESHHHHTS
T ss_pred CcCcchhhHHHHHHHHHHcCCCcEEEEcCC-CCHHHHH-HHHHcCCCeeEECHhhhcc
Confidence 112235567888888888887545444333 3334444 4578999999999866554
|
| >d1eyea_ c.1.21.1 (A:) Dihydropteroate synthetase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Dihydropteroate synthetase-like family: Dihydropteroate synthetase domain: Dihydropteroate synthetase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.32 E-value=0.79 Score=44.79 Aligned_cols=137 Identities=12% Similarity=0.139 Sum_probs=89.3
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEeeccCC------CCcccHHHHHHHHHHHHhcCcEeEEecCCCCHHHHHHHHHhCCC
Q psy8199 714 ILSIESVITAAQKAKSDGATRFCMGAAWRE------LKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLD 787 (965)
Q Consensus 714 ~~~~eei~~~~~~~~~~g~~~i~l~~g~~~------~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~e~l~~Lk~aG~~ 787 (965)
..+.++.++.++++.+.|+.-+-+.+-... .....++++...++.+++.++.+ ++.....++++..-++|++
T Consensus 21 ~~~~~~a~~~a~~~~~~GAdiIDIGgeSTrPga~~is~~eE~~Rl~p~i~~~~~~~~~i--SIDT~~~~Va~~al~~Ga~ 98 (270)
T d1eyea_ 21 YLDLDDAVKHGLAMAAAGAGIVDVGGESSRPGATRVDPAVETSRVIPVVKELAAQGITV--SIDTMRADVARAALQNGAQ 98 (270)
T ss_dssp CCSHHHHHHHHHHHHHTTCSEEEEECC--------------HHHHHHHHHHHHHTTCCE--EEECSCHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCccCCCCCEeeechhhcccccceeeeecccceee--chHhhhHHHHHHHHhcCCe
Confidence 468999999999999999999999764331 12345778888888888777664 5677789999999999999
Q ss_pred eEe-c-cCCCCHHHHhcc----------cCC-------C---C--------HHHHHHHHHHHHHcCCcee-eeEEEec--
Q psy8199 788 YYN-H-NLDTSPKLYGDI----------IST-------R---D--------YENRLNTLKNVRNVGINIC-CGGIIGL-- 834 (965)
Q Consensus 788 ~i~-i-~~es~~~~~~~i----------~~~-------~---~--------~~~~~~~i~~~~~~Gi~v~-~~~i~Gl-- 834 (965)
.++ + +...+++.+.-+ +.. + . .....+.++.+.+.|+... .-+=.|+
T Consensus 99 iINDvsg~~~d~~m~~~~a~~~~~~vlmh~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Gi~~~~IilDPGiGF 178 (270)
T d1eyea_ 99 MVNDVSGGRADPAMGPLLAEADVPWVLMHWRAVSADTPHVPVRYGNVVAEVRADLLASVADAVAAGVDPARLVLDPGLGF 178 (270)
T ss_dssp EEEETTTTSSCTTHHHHHHHHTCCEEEECCCCSCTTCTTSCCCCSSHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCTTS
T ss_pred EEEeccccccchhHHhhhhhcccceeeeeccccccccccccccccchhhhhhhHHHHHHHHHHhccccceEEEEcccccc
Confidence 988 5 454455544211 100 0 1 1345566777888999543 2233344
Q ss_pred CCCHHHHHHHHHHHHhcC
Q psy8199 835 SESRDQRAELIFQLANLN 852 (965)
Q Consensus 835 ~et~ed~~~~l~~l~~l~ 852 (965)
|-|.++=.+.++.+.++.
T Consensus 179 gKt~~~n~~lL~~l~~~~ 196 (270)
T d1eyea_ 179 AKTAQHNWAILHALPELV 196 (270)
T ss_dssp SCCHHHHHHHHHTHHHHH
T ss_pred CcccchHHHHHHHHHhhc
Confidence 588887666666665543
|
| >d1x7fa2 c.1.8.12 (A:1-244) Outer surface protein, N-terminal domain {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Outer surface protein, N-terminal domain domain: Outer surface protein, N-terminal domain species: Bacillus cereus [TaxId: 1396]
Probab=90.99 E-value=2 Score=40.67 Aligned_cols=79 Identities=14% Similarity=0.133 Sum_probs=52.9
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEeeccC-CCCcccHHHHHHHHHHHHhcCcEeEE--ecCCC-----CHHHHHHHHHhCC
Q psy8199 715 LSIESVITAAQKAKSDGATRFCMGAAWR-ELKDRDLDNIENMICEVKKIGLETCL--TLGML-----NENQAYRLKKVGL 786 (965)
Q Consensus 715 ~~~eei~~~~~~~~~~g~~~i~l~~g~~-~~~~~~~~~~~~~~~~i~~~~~~i~~--~~~~~-----~~e~l~~Lk~aG~ 786 (965)
-+.++..+.++.+.+.|+++++..--.. .....-.+++.++++..++.++.+.+ ++..+ +.+.++.+++.|+
T Consensus 14 ~~~e~~~~yi~~a~~~Gf~~iFTSL~~~e~~~~~~~~~~~~l~~~a~~~g~~vi~DIsp~~l~~lg~s~~dl~~~~~lGi 93 (244)
T d1x7fa2 14 STKEKDMAYISAAARHGFSRIFTCLLSVNRPKEEIVAEFKEIINHAKDNNMEVILDVAPAVFDQLGISYSDLSFFAELGA 93 (244)
T ss_dssp SCHHHHHHHHHHHHTTTEEEEEEEECCC--------HHHHHHHHHHHHTTCEEEEEECTTCC------CCCTHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHCCCCEEEecCccCCCCHHHHHHHHHHHHHHHHHCCCEEEEEcCHHHHHHhCCCHHHHHHHHHCCC
Confidence 3578888899999999999887643111 11222356777888888888988866 44443 3355789999999
Q ss_pred CeEeccC
Q psy8199 787 DYYNHNL 793 (965)
Q Consensus 787 ~~i~i~~ 793 (965)
+.+-+..
T Consensus 94 ~glRlD~ 100 (244)
T d1x7fa2 94 DGIRLDV 100 (244)
T ss_dssp SEEEESS
T ss_pred CEEEEcC
Confidence 9887763
|
| >d1tx2a_ c.1.21.1 (A:) Dihydropteroate synthetase {Bacillus anthracis [TaxId: 1392]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Dihydropteroate synthetase-like family: Dihydropteroate synthetase domain: Dihydropteroate synthetase species: Bacillus anthracis [TaxId: 1392]
Probab=89.43 E-value=1 Score=43.95 Aligned_cols=136 Identities=16% Similarity=0.242 Sum_probs=89.4
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEeeccCCCC------cccHHHHHHHHHHHHh-cCcEeEEecCCCCHHHHHHHHHhCCC
Q psy8199 715 LSIESVITAAQKAKSDGATRFCMGAAWRELK------DRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLD 787 (965)
Q Consensus 715 ~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~------~~~~~~~~~~~~~i~~-~~~~i~~~~~~~~~e~l~~Lk~aG~~ 787 (965)
.++++.++.++++.+.|+.-+-+.+-...+. ...++++...++.+++ .++. +++.....++++...++|++
T Consensus 39 ~~~~~a~~~a~~~i~~GAdiIDIGaeSTrPg~~~is~~eE~~rl~p~i~~~~~~~~~~--iSIDT~~~~Va~~al~~G~~ 116 (273)
T d1tx2a_ 39 NEVDAAVRHAKEMRDEGAHIIDIGGESTRPGFAKVSVEEEIKRVVPMIQAVSKEVKLP--ISIDTYKAEVAKQAIEAGAH 116 (273)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEEEESCC----CCCCCHHHHHHHHHHHHHHHHHHSCSC--EEEECSCHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHCCCCEEEeeceeccccccccCHHHHHHhhchhHHhhhccceEE--EehHHhhHHHHHHHHHcCCe
Confidence 5789999999999999999999976443211 1235566677766665 3443 57777889999999999999
Q ss_pred eEe-c-cCCCCHHHHhcccC----------CC----------CHHHHHHHHHHHHHcCCce-eeeEEEec--CCCHHHHH
Q psy8199 788 YYN-H-NLDTSPKLYGDIIS----------TR----------DYENRLNTLKNVRNVGINI-CCGGIIGL--SESRDQRA 842 (965)
Q Consensus 788 ~i~-i-~~es~~~~~~~i~~----------~~----------~~~~~~~~i~~~~~~Gi~v-~~~~i~Gl--~et~ed~~ 842 (965)
.++ + +...+++..+.+.. .. -.....+.++.+.++|+.- ..-+=.|+ |-|.++-.
T Consensus 117 iINDvsg~~~D~~m~~~~~~~~~~~vlmH~~~~~~~~~~~~~~~~~~~~~i~~~~~~GI~~~~IiiDPGiGFgK~~~~n~ 196 (273)
T d1tx2a_ 117 IINDIWGAKAEPKIAEVAAHYDVPIILMHNRDNMNYRNLMADMIADLYDSIKIAKDAGVRDENIILDPGIGFAKTPEQNL 196 (273)
T ss_dssp EEEETTTTSSCTHHHHHHHHHTCCEEEECCCSCCCCSSHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCTTSSCCHHHHH
T ss_pred EEeccccccchhHHHHHHHhhcccccccccccccccccccchhhhhHHHHHHHHHHcCCChheEecCccCCccchHHHHH
Confidence 887 3 45555555532211 10 1234456677888899933 23333344 58888888
Q ss_pred HHHHHHHhcC
Q psy8199 843 ELIFQLANLN 852 (965)
Q Consensus 843 ~~l~~l~~l~ 852 (965)
+.++.+..+.
T Consensus 197 ~ll~~i~~l~ 206 (273)
T d1tx2a_ 197 EAMRNLEQLN 206 (273)
T ss_dssp HHHHTGGGGG
T ss_pred HHHhhhcccc
Confidence 7777666664
|
| >d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Hypothetical protein HI0047 species: Haemophilus influenzae [TaxId: 727]
Probab=89.17 E-value=1.9 Score=40.14 Aligned_cols=163 Identities=10% Similarity=0.047 Sum_probs=104.2
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHhcCcEeEE-ecCCCCHHHHHHHHHhCCCeEecc
Q psy8199 714 ILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCL-TLGMLNENQAYRLKKVGLDYYNHN 792 (965)
Q Consensus 714 ~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~~~~i~~-~~~~~~~e~l~~Lk~aG~~~i~i~ 792 (965)
..+.+++.+.++.+.+.|++.+-++--. +.-.+.++.+++....+.+ -...++.+.++...++|.+.+.-.
T Consensus 22 ~~~~~~~~~~~~al~~~Gi~~iEitl~~--------~~a~~~I~~l~~~~p~~~vGaGTV~~~~~~~~a~~aGa~FivSP 93 (212)
T d1vhca_ 22 LDNADDILPLADTLAKNGLSVAEITFRS--------EAAADAIRLLRANRPDFLIAAGTVLTAEQVVLAKSSGADFVVTP 93 (212)
T ss_dssp CSSGGGHHHHHHHHHHTTCCEEEEETTS--------TTHHHHHHHHHHHCTTCEEEEESCCSHHHHHHHHHHTCSEEECS
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEeCCC--------hhHHHHHHHHHhcCCCceEeeeecccHHHHHHHHhhCCcEEECC
Confidence 3567899999999999999999995432 2235666767654444444 345669999999999999665322
Q ss_pred CCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCC
Q psy8199 793 LDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLY 872 (965)
Q Consensus 793 ~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~ 872 (965)
.. ..+.++.+++.++.+..+.+ |..|+. .+.+++ .+.+-++ | ...
T Consensus 94 -------------~~----~~~v~~~a~~~~i~~iPGv~-----TpsEi~----~A~~~G--~~~vK~F---P--A~~-- 138 (212)
T d1vhca_ 94 -------------GL----NPKIVKLCQDLNFPITPGVN-----NPMAIE----IALEMG--ISAVKFF---P--AEA-- 138 (212)
T ss_dssp -------------SC----CHHHHHHHHHTTCCEECEEC-----SHHHHH----HHHHTT--CCEEEET---T--TTT--
T ss_pred -------------CC----CHHHHHHHHhcCCCccCCcC-----CHHHHH----HHHHCC--CCEEEEc---c--ccc--
Confidence 11 14667889999998877666 666655 445667 6666554 3 211
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeCCcc
Q psy8199 873 GSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKL 929 (965)
Q Consensus 873 ~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~ 929 (965)
.....+++ ..+-.+|+..+...++-.. .++... |.+|+.....|+.+
T Consensus 139 ----~gG~~~lk---al~~p~p~~~~~ptGGV~~--~N~~~y-l~~g~v~~~~Gs~l 185 (212)
T d1vhca_ 139 ----SGGVKMIK---ALLGPYAQLQIMPTGGIGL--HNIRDY-LAIPNIVACGGSWF 185 (212)
T ss_dssp ----TTHHHHHH---HHHTTTTTCEEEEBSSCCT--TTHHHH-HTSTTBCCEEECGG
T ss_pred ----cchHHHHH---HHhccccCCeEEecCCCCH--HHHHHH-HhCCCEEEEEChhh
Confidence 22333433 3345688775544444332 344444 67888877777755
|
| >d1n7ka_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=88.84 E-value=9.5 Score=35.69 Aligned_cols=177 Identities=17% Similarity=0.146 Sum_probs=109.8
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHH-HHhcCcEeEEecCC----CCH----HHHHHHHHh
Q psy8199 714 ILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICE-VKKIGLETCLTLGM----LNE----NQAYRLKKV 784 (965)
Q Consensus 714 ~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~-i~~~~~~i~~~~~~----~~~----e~l~~Lk~a 784 (965)
..++++|.+.++++.+.|+..+|+. | .+...++. ++..++.+++-.|. .+. ...+...+.
T Consensus 32 ~~T~~~i~~lc~~A~~~~~~avcV~----p-------~~v~~a~~~l~~s~v~v~tVigFP~G~~~~~~k~~E~~~Ai~~ 100 (234)
T d1n7ka_ 32 RATEEDVRNLVREASDYGFRCAVLT----P-------VYTVKISGLAEKLGVKLCSVIGFPLGQAPLEVKLVEAQTVLEA 100 (234)
T ss_dssp TCCHHHHHHHHHHHHHHTCSEEEEC----H-------HHHHHHHHHHHHHTCCEEEEESTTTCCSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCeEEEEC----c-------HhHHHHHHHhhcCCCceEEEEecCCCCCcHHHHHHHHHHHHHc
Confidence 3689999999999999999999981 1 22333333 33457777664433 333 336666678
Q ss_pred CCCeEeccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecC-CCHHHHHHHHHHHHhcCCCCCceeeccc
Q psy8199 785 GLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLS-ESRDQRAELIFQLANLNPYPESVPINNL 863 (965)
Q Consensus 785 G~~~i~i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~-et~ed~~~~l~~l~~l~~~~~~i~~~~~ 863 (965)
|.+-+.+-+.-. . .+...+++..+.++.++..|..+ -+|+-.+ -+.+++....+...+.+ .++|.-+
T Consensus 101 GAdEID~Vin~~-----~-~~~~~~~ev~~~~~~~~~~g~~l--KVIlEt~~L~~~~i~~a~~~a~~aG--adFVKTS-- 168 (234)
T d1n7ka_ 101 GATELDVVPHLS-----L-GPEAVYREVSGIVKLAKSYGAVV--KVILEAPLWDDKTLSLLVDSSRRAG--ADIVKTS-- 168 (234)
T ss_dssp TCCEEEECCCGG-----G-CHHHHHHHHHHHHHHHHHTTCEE--EEECCGGGSCHHHHHHHHHHHHHTT--CSEEESC--
T ss_pred CCCeEEEEechh-----h-hhhhhHHHHHHHHHHHhccCceE--EEEEeccccchHHHHHHHHHHHHhh--hhheeec--
Confidence 999887655321 0 11224566667777777777654 3555444 57888999999999999 8888644
Q ss_pred cccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEE
Q psy8199 864 VQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSI 923 (965)
Q Consensus 864 ~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~ 923 (965)
|-+.. ...++.+..++....+ -....+.++++--.. +.....+.+||+.+
T Consensus 169 -----TG~~~-~gat~~~~~~l~~~~~--~~~vgIKasGGIrt~--~~a~~~i~aGa~rI 218 (234)
T d1n7ka_ 169 -----TGVYT-KGGDPVTVFRLASLAK--PLGMGVKASGGIRSG--IDAVLAVGAGADII 218 (234)
T ss_dssp -----CSSSC-CCCSHHHHHHHHHHHG--GGTCEEEEESSCCSH--HHHHHHHHTTCSEE
T ss_pred -----ccccC-CCCCHHHHHHHHHHhc--CCCCcEEeeCCcCCH--HHHHHHHHccCcee
Confidence 33322 2235666665554443 124556776655442 33445688999974
|
| >d1vc4a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Thermus thermophilus [TaxId: 274]
Probab=88.60 E-value=8.4 Score=36.44 Aligned_cols=179 Identities=13% Similarity=0.055 Sum_probs=112.1
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHh-cCcEeEEecCCCCHHHHHHHHHhCCCeEeccC
Q psy8199 715 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDYYNHNL 793 (965)
Q Consensus 715 ~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~-~~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~~ 793 (965)
.++.++ ++.+.+.|+..+.+.+...- ....++++.. +++ ..+.+-.....+++..+..-+.+|.|.+.+-.
T Consensus 65 ~dp~~~---A~~y~~~GA~aiSVLTe~~~-F~Gs~~dl~~----v~~~~~iPvLrKDFIid~~QI~ea~~~GADaVLLIa 136 (254)
T d1vc4a_ 65 VDPVEA---ALAYARGGARAVSVLTEPHR-FGGSLLDLKR----VREAVDLPLLRKDFVVDPFMLEEARAFGASAALLIV 136 (254)
T ss_dssp CCHHHH---HHHHHHTTCSEEEEECCCSS-SCCCHHHHHH----HHHHCCSCEEEESCCCSHHHHHHHHHTTCSEEEEEH
T ss_pred CCHHHH---HHHHHhcCCceEEEEcCccc-ccccHHHHHH----HHHHcCCCcccCCccccHHHHHHHHhccchHHHHHH
Confidence 456554 56777889999998886432 3345666533 343 68888888999999999999999999997764
Q ss_pred CCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCC
Q psy8199 794 DTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYG 873 (965)
Q Consensus 794 es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~ 873 (965)
.+... +..+.++.+++.|+.+-.-+ ++.+|+. .+.+++ +..|.+|.- .+..
T Consensus 137 ----all~~--------~l~~l~~~A~~lgl~~LVEv-----h~~~El~----~a~~~~--a~iIGINnR------dL~t 187 (254)
T d1vc4a_ 137 ----ALLGE--------LTGAYLEEARRLGLEALVEV-----HTERELE----IALEAG--AEVLGINNR------DLAT 187 (254)
T ss_dssp ----HHHGG--------GHHHHHHHHHHHTCEEEEEE-----CSHHHHH----HHHHHT--CSEEEEESB------CTTT
T ss_pred ----HHHHH--------HHHHHHHHHHHhCCceEEEe-----ccHHHHh----hhhcCC--CCEEEEecc------chhh
Confidence 12111 12355678999998663211 4666644 445667 788888842 2333
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeCCccccCCC
Q psy8199 874 SSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDN 934 (965)
Q Consensus 874 ~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~~ 934 (965)
.. .+.....++....+..-.+. +.++.+=.....+. ..+.+|+|++.+|++++++..
T Consensus 188 ~~-vd~~~~~~l~~~i~~~~~~~-i~IsESGI~~~~dv--~~l~~g~davLIGesLm~~~d 244 (254)
T d1vc4a_ 188 LH-INLETAPRLGRLARKRGFGG-VLVAESGYSRKEEL--KALEGLFDAVLIGTSLMRAPD 244 (254)
T ss_dssp CC-BCTTHHHHHHHHHHHTTCCS-EEEEESCCCSHHHH--HTTTTTCSEEEECHHHHTSSC
T ss_pred hh-cchHHHHHhhhcccccCCCC-EEEEccCCCCHHHH--HHHHcCCCEEEEChhhcCCCC
Confidence 22 24444555555555444444 43443221222333 345789999999999887754
|
| >d1qopa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Salmonella typhimurium [TaxId: 90371]
Probab=87.13 E-value=8.8 Score=36.77 Aligned_cols=185 Identities=15% Similarity=0.070 Sum_probs=105.8
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEeecc-CCCCcc---------------cHHHHHHHHHHHHhc--CcEeEE----ec--C
Q psy8199 716 SIESVITAAQKAKSDGATRFCMGAAW-RELKDR---------------DLDNIENMICEVKKI--GLETCL----TL--G 771 (965)
Q Consensus 716 ~~eei~~~~~~~~~~g~~~i~l~~g~-~~~~~~---------------~~~~~~~~~~~i~~~--~~~i~~----~~--~ 771 (965)
+.+.-.+.++.+.+.|++-+-+.-.- +|..+. ..+.+.++++.+++. ...+.+ |+ .
T Consensus 29 ~~~~~~~~~~~l~~~GaDiiElGiPfSDP~aDGpvIq~a~~~al~~G~~~~~~~~~~~~~r~~~~~~pivlm~Y~N~i~~ 108 (267)
T d1qopa_ 29 GIEQSLKIIDTLIDAGADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLAIIREKHPTIPIGLLMYANLVFN 108 (267)
T ss_dssp CHHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSSSCEEEEECHHHHHT
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCcccccchHHHhhhhhcccccchhhhhhhhhhhhcccccccceEEEeeccchhh
Confidence 46777788888888999888885321 232222 245577788777763 333322 11 2
Q ss_pred CCCHHHHHHHHHhCCCeEeccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhc
Q psy8199 772 MLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANL 851 (965)
Q Consensus 772 ~~~~e~l~~Lk~aG~~~i~i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l 851 (965)
.-.++.++.++++|++.+.+- +-.+++..+..+.++++|+..- .++ -+.|.++++..+ .+.
T Consensus 109 ~G~~~f~~~~~~~Gv~Gliip-------------DlP~ee~~~~~~~~~~~~l~~I--~lv-aPtt~~~Ri~~i---~~~ 169 (267)
T d1qopa_ 109 NGIDAFYARCEQVGVDSVLVA-------------DVPVEESAPFRQAALRHNIAPI--FIC-PPNADDDLLRQV---ASY 169 (267)
T ss_dssp TCHHHHHHHHHHHTCCEEEET-------------TCCGGGCHHHHHHHHHTTCEEE--CEE-CTTCCHHHHHHH---HHH
T ss_pred cCchHHHHHHHhcCCCceecc-------------chhhhhhHHHHHhhhccCceEE--EEe-cccccHHHHHHH---Hhh
Confidence 224788999999999988665 2234444555667888888642 222 356666666555 333
Q ss_pred CCCCCceeeccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeCCcc
Q psy8199 852 NPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKL 929 (965)
Q Consensus 852 ~~~~~~i~~~~~~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~ 929 (965)
. ..++.+. ...|+-=.+ .....++.+.+...|..- + +++..+.+--.++....++.+|||++++|+.+
T Consensus 170 a--~gFiY~v---s~~GvTG~~--~~~~~~~~~~i~~ik~~t-~--~Pv~vGFGI~~~e~v~~~~~~~ADGvIVGSAi 237 (267)
T d1qopa_ 170 G--RGYTYLL---SRSGVTGAE--NRGALPLHHLIEKLKEYH-A--APALQGFGISSPEQVSAAVRAGAAGAISGSAI 237 (267)
T ss_dssp C--CSCEEEE---SSSSCCCSS--SCC--CCHHHHHHHHHTT-C--CCEEEESSCCSHHHHHHHHHTTCSEEEECHHH
T ss_pred C--chhhhhh---cccccCCcc--cccchhHHHHHHHHhhhc-c--CCceeecccCCHHHHHHHHhcCCCEEEECHHH
Confidence 3 3444322 233532111 122334555666667654 2 44555454322333334588999999999754
|
| >d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Escherichia coli [TaxId: 562]
Probab=86.74 E-value=1.8 Score=40.28 Aligned_cols=164 Identities=11% Similarity=0.044 Sum_probs=106.1
Q ss_pred cCCCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHhcCcEeEE-ecCCCCHHHHHHHHHhCCCeEec
Q psy8199 713 KILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCL-TLGMLNENQAYRLKKVGLDYYNH 791 (965)
Q Consensus 713 ~~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~~~~i~~-~~~~~~~e~l~~Lk~aG~~~i~i 791 (965)
+..++++.+..++.+.+.|++-+-++--. +...+.++.+++....+.+ -...++.+.++...++|.+.+.-
T Consensus 22 r~~~~~~a~~~~~al~~~Gi~~iEitl~t--------p~a~~~I~~l~~~~p~~~vGaGTV~~~~~~~~a~~aGa~FivS 93 (213)
T d1wbha1 22 VVKKLEHAVPMAKALVAGGVRVLNVTLRT--------ECAVDAIRAIAKEVPEAIVGAGTVLNPQQLAEVTEAGAQFAIS 93 (213)
T ss_dssp CCSSGGGHHHHHHHHHHTTCCEEEEESCS--------TTHHHHHHHHHHHCTTSEEEEESCCSHHHHHHHHHHTCSCEEE
T ss_pred ECCCHHHHHHHHHHHHHCCCCEEEEeCCC--------hhHHHHHHHHHHHCCCCeeeccccccHHHHHHHHHCCCcEEEC
Confidence 44678999999999999999999995431 2245666666664444444 44567999999999999965532
Q ss_pred cCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCC
Q psy8199 792 NLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPL 871 (965)
Q Consensus 792 ~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l 871 (965)
. .. ..+.++.+++.|+.+..+.+ |..|+.. +.+++ .+.+.++ | ...
T Consensus 94 P-------------~~----~~~v~~~a~~~~i~~iPGv~-----TpsEi~~----A~~~G--~~~vKlF---P--A~~- 139 (213)
T d1wbha1 94 P-------------GL----TEPLLKAATEGTIPLIPGIS-----TVSELML----GMDYG--LKEFKFF---P--AEA- 139 (213)
T ss_dssp S-------------SC----CHHHHHHHHHSSSCEEEEES-----SHHHHHH----HHHTT--CCEEEET---T--TTT-
T ss_pred C-------------CC----CHHHHHHHHhcCCCccCCcC-----CHHHHHH----HHHCC--CCEEEec---c--chh-
Confidence 2 11 14567889999998876665 6666554 45667 6666554 2 211
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeCCcc
Q psy8199 872 YGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKL 929 (965)
Q Consensus 872 ~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~ 929 (965)
..+..+++ ..+-.+|+...-..++-.. .++... +.+|+.....|+.+
T Consensus 140 -----~Gg~~~lk---al~~p~p~~~~~ptGGV~~--~n~~~y-l~~g~v~~~~Gs~l 186 (213)
T d1wbha1 140 -----NGGVKALQ---AIAGPFSQVRFCPTGGISP--ANYRDY-LALKSVLCIGGSWL 186 (213)
T ss_dssp -----TTHHHHHH---HHHTTCTTCEEEEBSSCCT--TTHHHH-HTSTTBSCEEEGGG
T ss_pred -----cChHHHHH---HhcCcccCCceeeeCCCCH--HHHHHH-HhCCCEEEEEChhh
Confidence 23344444 3455688765554444332 445544 78898877777754
|
| >d1ub3a_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Thermus thermophilus [TaxId: 274]
Probab=86.68 E-value=12 Score=34.37 Aligned_cols=179 Identities=16% Similarity=0.114 Sum_probs=110.2
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHhcCcEeEEecCCC----C----HHHHHHHHHhC
Q psy8199 714 ILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGML----N----ENQAYRLKKVG 785 (965)
Q Consensus 714 ~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~----~----~e~l~~Lk~aG 785 (965)
..+.++|.+.++++.+.|+..+|+ ++ ...+...+ .++..++.+++-.+.. + ....+...+.|
T Consensus 14 ~~T~~~i~~lc~~A~~~~~~aVcV-----~P--~~v~~a~~---~l~~s~v~v~~VigFP~G~~~~~~k~~e~~~ai~~G 83 (211)
T d1ub3a_ 14 TATLEEVAKAAEEALEYGFYGLCI-----PP--SYVAWVRA---RYPHAPFRLVTVVGFPLGYQEKEVKALEAALACARG 83 (211)
T ss_dssp TCCHHHHHHHHHHHHHHTCSEEEC-----CG--GGHHHHHH---HCTTCSSEEEEEESTTTCCSCHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHhCCeEEEE-----CH--HHHHHHHH---HccCCCCceEEEEecccccCcHHHHHHHHHHHHHcC
Confidence 368999999999999999999998 21 11222222 2344677776644333 2 23455666789
Q ss_pred CCeEeccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecC-CCHHHHHHHHHHHHhcCCCCCceeecccc
Q psy8199 786 LDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLS-ESRDQRAELIFQLANLNPYPESVPINNLV 864 (965)
Q Consensus 786 ~~~i~i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~-et~ed~~~~l~~l~~l~~~~~~i~~~~~~ 864 (965)
.+.+.+-++- ..+. ...++...+-++.+.++--....-+|+-.+ -+.+++....+.+.+.+ .++|.-+
T Consensus 84 A~EiD~V~n~-----~~~~-~g~~~~v~~ei~~v~~~~~~~~lKVIlEt~~L~~~ei~~a~~~a~~aG--adfiKTS--- 152 (211)
T d1ub3a_ 84 ADEVDMVLHL-----GRAK-AGDLDYLEAEVRAVREAVPQAVLKVILETGYFSPEEIARLAEAAIRGG--ADFLKTS--- 152 (211)
T ss_dssp CSEEEEECCH-----HHHH-TTCHHHHHHHHHHHHHHSTTSEEEEECCGGGSCHHHHHHHHHHHHHHT--CSEEECC---
T ss_pred CCeEEEeecc-----chhh-cCCHHHHHHHHHHHHHhccCCceEEEeccccCCHHHHHHHHHHHHHhc--cceEEec---
Confidence 9888766521 1122 345666666666666632223345676665 68899999999999999 8888654
Q ss_pred ccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEE
Q psy8199 865 QIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSI 923 (965)
Q Consensus 865 P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~ 923 (965)
|-+.. ...++++...+.... -+...+..+++-.. .+.....+.+||+.+
T Consensus 153 ----TG~~~-~gat~e~v~~m~~~~---~~~~~iKasGGIrt--~~~a~~~l~aGa~ri 201 (211)
T d1ub3a_ 153 ----TGFGP-RGASLEDVALLVRVA---QGRAQVKAAGGIRD--RETALRMLKAGASRL 201 (211)
T ss_dssp ----CSSSS-CCCCHHHHHHHHHHH---TTSSEEEEESSCCS--HHHHHHHHHTTCSEE
T ss_pred ----CCCCC-CCCCHHHHHHHHHHh---CCCceEECcCCCCC--HHHHHHHHHHhhhHh
Confidence 32222 234666655444332 24566776665444 233445688999974
|
| >d1ajza_ c.1.21.1 (A:) Dihydropteroate synthetase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Dihydropteroate synthetase-like family: Dihydropteroate synthetase domain: Dihydropteroate synthetase species: Escherichia coli [TaxId: 562]
Probab=86.34 E-value=3.9 Score=39.69 Aligned_cols=137 Identities=13% Similarity=0.160 Sum_probs=86.4
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEeeccCCC------CcccHHHHHHHHHHHHh-cCcEeEEecCCCCHHHHHHHHHhCC
Q psy8199 714 ILSIESVITAAQKAKSDGATRFCMGAAWREL------KDRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGL 786 (965)
Q Consensus 714 ~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~------~~~~~~~~~~~~~~i~~-~~~~i~~~~~~~~~e~l~~Lk~aG~ 786 (965)
..++++.++.++++.+.|+.-+-+.+-...+ ....++++...++.+++ .++ .+++.....++.+.--++|+
T Consensus 34 ~~~~~~a~~~a~~mi~~GAdiIDIGgeSTrPga~~vs~eeE~~Rl~pvi~~l~~~~~~--~iSIDT~~~eVa~~al~~Ga 111 (282)
T d1ajza_ 34 HNSLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELQRVIPVVEAIAQRFEV--WISVDTSKPEVIRESAKVGA 111 (282)
T ss_dssp SSHHHHHHHHHHHHHHHTCSEEEEESSCCSTTCCCCCHHHHHHHHHHHHHHHHHHCCC--EEEEECCCHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCccccccccCCcHHHHHHHHHHHHHHHhhcccc--eEEEEecChHHHHHHHhcCc
Confidence 4689999999999999999999997644321 12347788888888874 344 45666777888888888888
Q ss_pred CeEec-cCCCCHHHHhccc----------CC------------C-----CHHHHHHHHHHHHHcCCc---eeeeEEEecC
Q psy8199 787 DYYNH-NLDTSPKLYGDII----------ST------------R-----DYENRLNTLKNVRNVGIN---ICCGGIIGLS 835 (965)
Q Consensus 787 ~~i~i-~~es~~~~~~~i~----------~~------------~-----~~~~~~~~i~~~~~~Gi~---v~~~~i~Gl~ 835 (965)
+.|+= +=-.+++.++.+. .. . -.+...+.++.+.++|+. +...-=+|+|
T Consensus 112 ~iINDvsg~~~~~~~~~va~~~~~~vlmh~~g~p~~~~~~~~y~dv~~~v~~~~~~~~~~~~~~GI~~~~IilDPGiGFg 191 (282)
T d1ajza_ 112 HIINDIRSLSEPGALEAAAETGLPVCLMHMQGNPKTMQEAPKYDDVFAEVNRYFIEQIARCEQAGIAKEKLLLDPGFGFG 191 (282)
T ss_dssp CEECCTTTTCSTTHHHHHHHHTCCEEEECCSSCTTCCSCCCCCSCHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCTTSS
T ss_pred eEEechhhcccchhHHHhhccCceEEEeccCCCccccccCCcccchhhhhHHHHHHHHHHHHHcCCcHhhEecCCCcCcC
Confidence 77752 1111344442111 00 0 134556677888999993 3333223445
Q ss_pred CCHHHHHHHHHHHHhcC
Q psy8199 836 ESRDQRAELIFQLANLN 852 (965)
Q Consensus 836 et~ed~~~~l~~l~~l~ 852 (965)
-|.++-.+.++.+..+.
T Consensus 192 K~~~~n~~ll~~l~~~~ 208 (282)
T d1ajza_ 192 KNLSHNYSLLARLAEFH 208 (282)
T ss_dssp CCHHHHHHHHHTGGGGG
T ss_pred CChhhhHHHHhhcchhh
Confidence 77777666665555543
|
| >d1a53a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=85.91 E-value=14 Score=34.62 Aligned_cols=177 Identities=10% Similarity=0.073 Sum_probs=114.8
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHhcCcEeEEecCCCCHHHHHHHHHhCCCeEeccCC
Q psy8199 715 LSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYNHNLD 794 (965)
Q Consensus 715 ~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~~e 794 (965)
.++.++. +..+.|+..+.+.+... .....++++.++- +...+.+-.....+++.++..-+.+|.|.+.+-..
T Consensus 63 ~d~~~~a----~~~~~gA~aiSVLTd~~-~F~Gs~~dl~~v~---~~~~~PiLrKDFIid~~QI~ea~~~GADaiLLI~~ 134 (247)
T d1a53a_ 63 RDPIEYS----KFMERYAVGLSILTEEK-YFNGSYETLRKIA---SSVSIPILMKDFIVKESQIDDAYNLGADTVLLIVK 134 (247)
T ss_dssp CCHHHHH----HHHTTTCSEEEEECCCT-TTCCCHHHHHHHH---HHCCSCEEEESCCCSHHHHHHHHHHTCSEEEEEGG
T ss_pred cCHHHHH----HHHHhCCCeEEEecCcc-ccccchHHHHHHH---hccccceeecccccChHHHHHHHHhhcchhhhhhh
Confidence 3566654 24567898888876643 2234555554432 23678888888999999999999999999987764
Q ss_pred CCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCCC
Q psy8199 795 TSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGS 874 (965)
Q Consensus 795 s~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~~ 874 (965)
. -+.++..+.++.+++.|+.+-.-+ +|.+|+. .+.+++ ...|.+|. ..+...
T Consensus 135 ~-----------L~~~~l~~l~~~a~~lgl~~LvEv-----h~~~El~----~a~~~~--a~iIGINn------RnL~t~ 186 (247)
T d1a53a_ 135 I-----------LTERELESLLEYARSYGMEPLIEI-----NDENDLD----IALRIG--ARFIGINS------RDLETL 186 (247)
T ss_dssp G-----------SCHHHHHHHHHHHHTTTCCCEEEE-----CSHHHHH----HHHHTT--CSEEEEES------BCTTTC
T ss_pred h-----------ccHHHHHHHHHHHHHHhhhHHhhc-----CCHHHHH----HHHhCC--CCeEeeec------cChhhh
Confidence 3 123456777889999999773211 4666654 445567 78888873 334333
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeCCccccCC
Q psy8199 875 SILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTD 933 (965)
Q Consensus 875 ~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~~t~~ 933 (965)
..+.+...++.. .+|...+.++.+-.....+.. ....+|+|++.+|+.++++.
T Consensus 187 -~vd~~~~~~L~~----~ip~~~~~IaESGI~t~~dv~-~l~~~G~davLIGeaLmk~~ 239 (247)
T d1a53a_ 187 -EINKENQRKLIS----MIPSNVVKVAESGISERNEIE-ELRKLGVNAFLIGSSLMRNP 239 (247)
T ss_dssp -CBCHHHHHHHHH----HSCTTSEEEEESCCCCHHHHH-HHHHTTCCEEEECHHHHHCT
T ss_pred -hhhhhHHHHHHh----hCCCCCeEEEecCCCCHHHHH-HHHHCCCCEEEECHHHcCCC
Confidence 246666666544 467655666544323223333 44689999999999887653
|
| >d1rd5a_ c.1.2.4 (A:) Trp synthase alpha-subunit {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Maize (Zea mays) [TaxId: 4577]
Probab=85.13 E-value=11 Score=35.76 Aligned_cols=186 Identities=12% Similarity=0.089 Sum_probs=106.5
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEeec-cCCCCc---------------ccHHHHHHHHHHHHhc-CcEeEEecCC--CCHH
Q psy8199 716 SIESVITAAQKAKSDGATRFCMGAA-WRELKD---------------RDLDNIENMICEVKKI-GLETCLTLGM--LNEN 776 (965)
Q Consensus 716 ~~eei~~~~~~~~~~g~~~i~l~~g-~~~~~~---------------~~~~~~~~~~~~i~~~-~~~i~~~~~~--~~~e 776 (965)
+.+.-.+.++.+.+.|+.-+-|.-. .+|..+ ...+.++++++.+++. ...+.+-... +-..
T Consensus 29 ~~~~~~~~l~~l~~~G~DiiElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~~p~ilm~Y~n~~~~~ 108 (261)
T d1rd5a_ 29 DLATTAEALRLLDGCGADVIELGVPCSDPYIDGPIIQASVARALASGTTMDAVLEMLREVTPELSCPVVLLSYYKPIMFR 108 (261)
T ss_dssp CHHHHHHHHHHHHHTTCSSEEEECCCSCCTTSCHHHHHHHHHHHTTTCCHHHHHHHHHHHGGGCSSCEEEECCSHHHHSC
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCcCcCCcceeeeeeeccccCcchhhhhhhhhcccccccCceeeeeeecchhhH
Confidence 5788888888888999888887531 123222 2356778888888752 3333221110 0011
Q ss_pred HHHHHHHhCCCeEeccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCC
Q psy8199 777 QAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPE 856 (965)
Q Consensus 777 ~l~~Lk~aG~~~i~i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~ 856 (965)
-++.++++|++.+.+- +-.+++..+..+.+++.|+... +++ -+.|.+++++.+ .+.. ..
T Consensus 109 ~~~~~~~~GvdG~Iip-------------Dlp~eE~~~~~~~~~~~gl~~I--~lv-aPtt~~~Ri~~i---~~~a--~g 167 (261)
T d1rd5a_ 109 SLAKMKEAGVHGLIVP-------------DLPYVAAHSLWSEAKNNNLELV--LLT-TPAIPEDRMKEI---TKAS--EG 167 (261)
T ss_dssp CTHHHHHTTCCEEECT-------------TCBTTTHHHHHHHHHHTTCEEC--EEE-CTTSCHHHHHHH---HHHC--CS
T ss_pred HHHHHHhcCceeeeec-------------CccHHHHHHHHHHHhccccceE--EEe-ccCCchhHHHHH---HhcC--cc
Confidence 2577899999887653 2334455566778889998542 233 355666665444 3433 35
Q ss_pred ceeeccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeCCccc
Q psy8199 857 SVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLL 930 (965)
Q Consensus 857 ~i~~~~~~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~~ 930 (965)
+|.+....+.-|..- .-..+..+.+...|..- + +++..+.+--.++.......+|||++++|+.++
T Consensus 168 FvY~vs~~GvTG~~~-----~~~~~~~~~i~~ik~~t-~--~Pi~vGFGI~~~e~v~~~~~~gaDGvIVGSaiv 233 (261)
T d1rd5a_ 168 FVYLVSVNGVTGPRA-----NVNPRVESLIQEVKKVT-N--KPVAVGFGISKPEHVKQIAQWGADGVIIGSAMV 233 (261)
T ss_dssp CEEEECSSCCBCTTS-----CBCTHHHHHHHHHHHHC-S--SCEEEESCCCSHHHHHHHHHTTCSEEEECHHHH
T ss_pred hhhhhhccCcccccc-----cchhHHHHHHHHhhhcc-C--CCeEEEcCCCCHHHHHHHHhcCCCEEEECHHHH
Confidence 555443344333321 12234566677777775 3 445555543234444445677999999998654
|
| >d1w0ma_ c.1.1.1 (A:) Triosephosphate isomerase {Thermoproteus tenax [TaxId: 2271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Thermoproteus tenax [TaxId: 2271]
Probab=84.25 E-value=4.1 Score=38.27 Aligned_cols=132 Identities=14% Similarity=0.208 Sum_probs=78.7
Q ss_pred HHHHHHHhCCCeEeccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCC
Q psy8199 777 QAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPE 856 (965)
Q Consensus 777 ~l~~Lk~aG~~~i~i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~ 856 (965)
..+.|+++|++++.++.--- ...+++..+.++.+++.|+.+. +-.||+.+.. ....++ ++
T Consensus 77 s~~~l~~~g~~~viigHsEr---------R~~~~e~~~~~~~~~~~gl~~i----vcvge~~~~~-----~~~~~~--~~ 136 (226)
T d1w0ma_ 77 SLENIKEAGGSGVILNHSEA---------PLKLNDLARLVAKAKSLGLDVV----VCAPDPRTSL-----AAAALG--PH 136 (226)
T ss_dssp BHHHHHHHTCCEEEECCTTS---------CCBHHHHHHHHHHHHHTTCEEE----EEESSHHHHH-----HHHHTC--CS
T ss_pred eHhhhcccccceEEeechhh---------hhhccchHHHHHHHHHcCCEEE----EecCchHHhh-----hhhccc--cc
Confidence 36777899999998875211 2335566677888899998643 2236665543 234566 56
Q ss_pred ceeeccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeCCccccC
Q psy8199 857 SVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTT 932 (965)
Q Consensus 857 ~i~~~~~~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~~t~ 932 (965)
.|.+.+.-+ =||-... .+...+++...+...+...++..+-..++-.. .+....+...|||++.+|...+..
T Consensus 137 iIayep~wa-IGtg~~~-~~~~~~~i~~~i~~~~~~~~~i~vlygGgV~~--~n~~~~~~~~g~dGvLVGsA~l~a 208 (226)
T d1w0ma_ 137 AVAVEPPEL-IGTGRAV-SRYKPEAIVETVGLVSRHFPEVSVITGAGIES--GDDVAAALRLGTRGVLLASAAVKA 208 (226)
T ss_dssp EEEECCGGG-TTTSCCH-HHHCHHHHHHHHHHHHHHCTTSEEEEESSCCS--HHHHHHHHHTTCSEEEECHHHHTC
T ss_pred eeeecchhh-ccCCCCC-ChhhhhHhhhhhhhhhccCCCceEEEecCcCC--hHHHHHHhcCCCCEEEechheecC
Confidence 555443322 2332211 11234566666666666777765544443322 344556788999999999866544
|
| >d2zdra2 c.1.10.6 (A:2-281) Capsule biosynthesis protein SiaC, N-terminal domain {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: NeuB-like domain: Capsule biosynthesis protein SiaC, N-terminal domain species: Neisseria meningitidis [TaxId: 487]
Probab=84.20 E-value=13 Score=35.87 Aligned_cols=176 Identities=13% Similarity=0.074 Sum_probs=114.9
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEeeccC----------------CC--------CcccHHHHHHHHHHHHhcCcEeEEecC
Q psy8199 716 SIESVITAAQKAKSDGATRFCMGAAWR----------------EL--------KDRDLDNIENMICEVKKIGLETCLTLG 771 (965)
Q Consensus 716 ~~eei~~~~~~~~~~g~~~i~l~~g~~----------------~~--------~~~~~~~~~~~~~~i~~~~~~i~~~~~ 771 (965)
+.+...+.+.++.+.|+..|-+|.... .. ...+.+++.++.+..++.++.+.+++.
T Consensus 32 d~~~a~~lI~~a~~sGadaVKfQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~~l~~~~k~~~i~~~~s~f 111 (280)
T d2zdra2 32 SLKTAFEMVDAAYNAGAEVVKHQTHIVEDEMSDEAKQVIPGNADVSIYEIMERCALNEEDEIKLKEYVESKGMIFISTPF 111 (280)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEECCHHHHCCGGGGGCCCTTCSSCHHHHHHHHCCCHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CHHHHHHHHHHHHHhCCCEEEecCcccchhcccccccccccccccccccccccccccchhhHHHHHHHHhcCCccccccc
Confidence 478888888889999999999986310 00 012245566666666778888877665
Q ss_pred CCCHHHHHHHHHhCCCeEeccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecC-CCHHHHHHHHHHHHh
Q psy8199 772 MLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLS-ESRDQRAELIFQLAN 850 (965)
Q Consensus 772 ~~~~e~l~~Lk~aG~~~i~i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~-et~ed~~~~l~~l~~ 850 (965)
+.+.++.+.+.|++.+-+.=-. - .....++.+.+.+.+ +++..| -+.+|+.+.+..+.+
T Consensus 112 --d~~s~~~~~~~~~~~~KIaS~d-----------~---~n~~Li~~i~k~~kp----iiiStG~s~~~EI~~av~~~~~ 171 (280)
T d2zdra2 112 --SRAAALRLQRMDIPAYKIGSGE-----------C---NNYPLIKLVASFGKP----IILSTGMNSIESIKKSVEIIRE 171 (280)
T ss_dssp --SHHHHHHHHHHTCSCEEECGGG-----------T---TCHHHHHHHHTTCSC----EEEECTTCCHHHHHHHHHHHHH
T ss_pred --hhhcccccccccccceeccchh-----------c---cccHhhhhhhhccCc----eeecccccchhHhhhhhhhhhh
Confidence 6888999999999877665211 0 113445555555554 577775 899999999999988
Q ss_pred cCCCCCceeeccccccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEE
Q psy8199 851 LNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSI 923 (965)
Q Consensus 851 l~~~~~~i~~~~~~P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~ 923 (965)
.+ ...+-++...-+| ||.++. -++.+...+..+|+..+-.+..- .+......|+..||+-+
T Consensus 172 ~~--~~~~llhc~s~YP-t~~~~~-------nL~~i~~lk~~f~~~~iG~SdH~--~g~~~~~~Ava~GA~~I 232 (280)
T d2zdra2 172 AG--VPYALLHCTNIYP-TPYEDV-------RLGGMNDLSEAFPDAIIGLSDHT--LDNYACLGAVALGGSIL 232 (280)
T ss_dssp HT--CCEEEEECCCCSS-CCGGGC-------CTTHHHHHHHHCTTSEEEEECCS--SSSHHHHHHHHTTCCEE
T ss_pred cc--ccceEEEeeccCc-cccccc-------cccccceeeccccccceeecCcc--cchhhHHHHHHCCCeEE
Confidence 77 4444444332222 333332 25556677777877656566543 24566778899999953
|
| >d1kcza1 c.1.11.2 (A:161-413) beta-Methylaspartase {Clostridium tetanomorphum [TaxId: 1553]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: beta-Methylaspartase species: Clostridium tetanomorphum [TaxId: 1553]
Probab=83.92 E-value=4.3 Score=38.85 Aligned_cols=151 Identities=9% Similarity=0.022 Sum_probs=95.4
Q ss_pred CCHHHHHHHHHHHHHCCCC-EEEEeeccCCCCcccHHHHHHHHHHHHh------cCcEeEEecCCCCHHHHHHHHHhC-C
Q psy8199 715 LSIESVITAAQKAKSDGAT-RFCMGAAWRELKDRDLDNIENMICEVKK------IGLETCLTLGMLNENQAYRLKKVG-L 786 (965)
Q Consensus 715 ~~~eei~~~~~~~~~~g~~-~i~l~~g~~~~~~~~~~~~~~~~~~i~~------~~~~i~~~~~~~~~e~l~~Lk~aG-~ 786 (965)
.++++.++.+..+.+.+.. .++| +.|....+.+...+.++.+++ ..+.+...-...+.+.++++.+.| +
T Consensus 89 ~~~~eai~~~~~L~~~~~~y~i~i---EqP~~~~d~~~~~e~~a~lr~~~~~~g~~vpI~~DE~~~~~~d~~~~i~~~a~ 165 (253)
T d1kcza1 89 VDIKAMADYIQTLAEAAKPFHLRI---EGPMDVEDRQKQMEAMRDLRAELDGRGVDAELVADEWCNTVEDVKFFTDNKAG 165 (253)
T ss_dssp TCHHHHHHHHHHHHHHHTTSCEEE---ECSBCCSSHHHHHHHHHHHHHHHHHHTCCEEEEECTTCCSHHHHHHHHHTTCS
T ss_pred CCHHHHHHHHHHHHHhcCCCCceE---ecCCCCccHhhHHHHHHHHHHHHhccCCccceeccccccCHHHHHHHHHhCCc
Confidence 4688998888887766432 2444 556655666666666666653 357777777778889999998876 6
Q ss_pred CeEeccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEec--CCCHHHHHHHHHHHHhcCCCCCceeecccc
Q psy8199 787 DYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL--SESRDQRAELIFQLANLNPYPESVPINNLV 864 (965)
Q Consensus 787 ~~i~i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl--~et~ed~~~~l~~l~~l~~~~~~i~~~~~~ 864 (965)
|.+.+.+ .+-.+....+++++.++++|+++ ++|. +||..............+ +..+ .
T Consensus 166 d~v~iK~----------~k~GGi~~al~~~~~a~~~Gi~~----~vg~~~~Et~~s~~a~~hla~A~~--~~~~-----~ 224 (253)
T d1kcza1 166 HMVQIKT----------PDLGGVNNIADAIMYCKANGMGA----YCGGTCNETNRSAEVTTNIGMACG--ARQV-----L 224 (253)
T ss_dssp SEEEECT----------GGGSSTHHHHHHHHHHHHTTCEE----EECCCTTSCHHHHHHHHHHHHHHT--CSEE-----E
T ss_pred Ceeeccc----------cccCCHHHHHHHHHHHHHcCCcE----EEcCccCCcchHHHHHHHHHHhcC--cchh-----h
Confidence 6766664 33345778999999999999976 4443 799987654444455555 4443 2
Q ss_pred ccCCCCCCCCCCCCHHHHHHHHHHH
Q psy8199 865 QIKGTPLYGSSILDPLEFIRTIAVA 889 (965)
Q Consensus 865 P~~gT~l~~~~~~~~~~~~~~ia~~ 889 (965)
-.||-++......-..+++|+.+.+
T Consensus 225 ~kpg~~~~~~~~~~~n~~~r~~~~~ 249 (253)
T d1kcza1 225 AKPGMGVDEGMMIVKNEMNRVLALV 249 (253)
T ss_dssp CCSSSSSHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCcccchhHHHHHHHHHHHHh
Confidence 2355443211111224555655544
|
| >d1vr6a1 c.1.10.4 (A:1-338) 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I DAHP synthetase domain: 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG) species: Thermotoga maritima [TaxId: 2336]
Probab=82.87 E-value=21 Score=35.15 Aligned_cols=185 Identities=12% Similarity=0.090 Sum_probs=103.0
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEeeccCC----CCc-ccHHHHHHHHHHHHh-cCcEeEEecCCCCHHHHHHHHHhCCCeE
Q psy8199 716 SIESVITAAQKAKSDGATRFCMGAAWRE----LKD-RDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKVGLDYY 789 (965)
Q Consensus 716 ~~eei~~~~~~~~~~g~~~i~l~~g~~~----~~~-~~~~~~~~~~~~i~~-~~~~i~~~~~~~~~e~l~~Lk~aG~~~i 789 (965)
|.|.+.+.++.+++.|.+-+ ..+...+ ... ..-+.-+++++.+++ .++.+.+.. .+.+.++.+.+. +|.+
T Consensus 106 S~e~~~~~A~~lke~g~~~~-r~g~fKpRtsp~sf~g~g~~gL~~l~~~k~~~glpvvTdV--~~~~~~~~~~e~-~Dil 181 (338)
T d1vr6a1 106 GREMLMETAHFLSELGVKVL-RGGAYKPRTSPYSFQGLGEKGLEYLREAADKYGMYVVTEA--LGEDDLPKVAEY-ADII 181 (338)
T ss_dssp CHHHHHHHHHHHHHTTCCEE-ECBSCCCCCSTTSCCCCTHHHHHHHHHHHHHHTCEEEEEC--SSGGGHHHHHHH-CSEE
T ss_pred CHHHHHHHHHHHHHhCcccc-ccceecccccccccccchHHHHHHHHHHHhhcCceeEEec--cchhhhhhhhce-eeeE
Confidence 57888999999999887633 3222211 100 112556788888885 688887654 456777777776 8999
Q ss_pred eccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccccccCCC
Q psy8199 790 NHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGT 869 (965)
Q Consensus 790 ~i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT 869 (965)
.++-- .+.. .+.++.+.+.|.+| .+==|..-|.+|+...++.+..-+ -..|.+. ..||
T Consensus 182 QI~A~--------~~~n------~~LL~~~g~t~kpV--~lKkG~~~s~~e~l~aae~i~~~G--n~~vilc----ERG~ 239 (338)
T d1vr6a1 182 QIGAR--------NAQN------FRLLSKAGSYNKPV--LLKRGFMNTIEEFLLSAEYIANSG--NTKIILC----ERGI 239 (338)
T ss_dssp EECGG--------GTTC------HHHHHHHHTTCSCE--EEECCTTCCHHHHHHHHHHHHHTT--CCCEEEE----ECCB
T ss_pred Eechh--------hccC------HHHHHHhhccCCcE--EecCccccchhhhhhhHHHHHhcC--Cccceee----eccc
Confidence 88832 2211 23344445555443 223333467888888888887776 4444332 2343
Q ss_pred C-CCCCCCCCHHHHHHHHHHHHH-HCCCCce--eccccccccchhhHHHHhhcCccEEeeCCc
Q psy8199 870 P-LYGSSILDPLEFIRTIAVARI-TMPTSRI--RMSAGRKEMGETTQAFCFLAGANSIFYGDK 928 (965)
Q Consensus 870 ~-l~~~~~~~~~~~~~~ia~~R~-~lp~~~i--~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~ 928 (965)
. ++....... + ++.+.+.+. ...+... ..++++..+-..+.+.|+.+|||++|++.+
T Consensus 240 ~t~~~~~~~~l-D-~~~i~~~k~~~~lPVi~DpsHs~G~r~~v~~larAAvA~GadGl~iE~H 300 (338)
T d1vr6a1 240 RTFEKATRNTL-D-ISAVPIIRKESHLPILVDPSHSGGRRDLVIPLSRAAIAVGAHGIIVEVH 300 (338)
T ss_dssp CCSCCSSSSBC-C-TTHHHHHHHHBSSCEEECHHHHHCSGGGHHHHHHHHHHHTCSEEEEEBC
T ss_pred cccccccccch-h-hcccceeeccccCceeeCCCCCCCchhHHHHHHHHHHHhCCCEEEEEeC
Confidence 2 111111000 1 112233332 2222222 223334344466788899999999999865
|
| >d3bofa1 c.1.21.2 (A:301-560) Cobalamin-dependent methionine synthase MetH, C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Dihydropteroate synthetase-like family: Methyltetrahydrofolate-utiluzing methyltransferases domain: Cobalamin-dependent methionine synthase MetH, C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=82.74 E-value=20 Score=33.93 Aligned_cols=187 Identities=15% Similarity=0.161 Sum_probs=111.0
Q ss_pred cCCCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHh-cCcEeEEecCCCCHHHHHHHHHh--CCCeE
Q psy8199 713 KILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK-IGLETCLTLGMLNENQAYRLKKV--GLDYY 789 (965)
Q Consensus 713 ~~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~-~~~~i~~~~~~~~~e~l~~Lk~a--G~~~i 789 (965)
+..+.+.+++.+++..+.|++-+-+..+- ......+.+..+++.+.. ..+.++ ....+.+.++.--++ |...+
T Consensus 35 ~~~d~d~~~~~A~~qv~~GA~iLDIn~~~--~~~~e~~~m~~li~~l~~~~d~Pls--IDT~~~~v~eaaLk~~~G~~iI 110 (260)
T d3bofa1 35 QKGNEEIVIKEAKTQVEKGAEVLDVNFGI--ESQIDVRYVEKIVQTLPYVSNVPLS--LDIQNVDLTERALRAYPGRSLF 110 (260)
T ss_dssp HTTCSHHHHHHHHHHHHTTCSEEEEECSS--GGGSCHHHHHHHHHHHHHHTCSCEE--EECCCHHHHHHHHHHCSSCCEE
T ss_pred HcCCHHHHHHHHHHHHHcCCCEEEeecCC--chhhhHHHHHHHHHHHHhcCCCCcc--ccCCCHHHHHHHHHHhcCcceE
Confidence 34678999999999999999999996663 334567777888888775 455544 555678888877777 76444
Q ss_pred eccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEE-EecCCCHHHHHHHHHHHHh----cCCCCCceeecccc
Q psy8199 790 NHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGI-IGLSESRDQRAELIFQLAN----LNPYPESVPINNLV 864 (965)
Q Consensus 790 ~i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i-~Gl~et~ed~~~~l~~l~~----l~~~~~~i~~~~~~ 864 (965)
+ .+... .++..+.+..++++|-.+.+-.+ =|.+.+.+++.+.++.+.+ .+ ..+.+.+-
T Consensus 111 N-----------sis~e--~~~~~~~~~l~~~yga~vI~l~~d~g~p~~~~er~~~~~~~~~~~~~~g-~~e~ii~D--- 173 (260)
T d3bofa1 111 N-----------SAKVD--EEELEMKINLLKKYGGTLIVLLMGKDVPKSFEERKEYFEKALKILERHD-FSDRVIFD--- 173 (260)
T ss_dssp E-----------EEESC--HHHHHHHHHHHHHHCCEEEEESCSSSCCCSHHHHHHHHHHHHHHHHHTT-CGGGEEEE---
T ss_pred e-----------ecccc--cchHHHHHHHHHhcCCCEEEEecCCcccccHHHHHHHHHHHHHHHHhcC-CcHhheec---
Confidence 3 11111 12334567889999987643222 3556788877666555544 23 12333333
Q ss_pred ccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchh--------hHHHHhhcCccEEee
Q psy8199 865 QIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGET--------TQAFCFLAGANSIFY 925 (965)
Q Consensus 865 P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~--------~~~~~l~~Gan~~~~ 925 (965)
|++-.-... -...+.++.+...|. |...+-+..++...|.. +-..|+.+|.|.-++
T Consensus 174 --Pli~~~~t~-~~~~~~l~~i~~i~~--~g~~~~~GlSN~SFGlp~R~~ln~~Fl~~a~~~Gld~aIv 237 (260)
T d3bofa1 174 --PGVLPLGAE-GKPVEVLKTIEFISS--KGFNTTVGLSNLSFGLPDRSYYNTAFLVLGISKGLSSAIM 237 (260)
T ss_dssp --CCCCCGGGT-CCHHHHHHHHHHHHH--TTCCBCCBGGGGGTTCTTHHHHHHHHHHHHHHTTCCEEEE
T ss_pred --ccceeccch-HHHHHHHHHHHHHHh--cCcceeeccccccCCCcchHHHHHHHHHHHHHcCCCcccC
Confidence 333211111 245677777777775 44444444444322221 333466788886554
|
| >d1o0ya_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Thermotoga maritima [TaxId: 2336]
Probab=81.94 E-value=21 Score=33.48 Aligned_cols=179 Identities=11% Similarity=0.113 Sum_probs=111.2
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHhcCcEeEEecCCC----C----HHHHHHHHHhC
Q psy8199 714 ILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGML----N----ENQAYRLKKVG 785 (965)
Q Consensus 714 ~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~----~----~e~l~~Lk~aG 785 (965)
..+.++|.+.++++.+.|+..+|+ + ....+...+ .++..++.+++-.|.. + ....+...+.|
T Consensus 47 ~~t~e~i~~lc~~A~~~~~aaVcV-----~--P~~v~~a~~---~L~gs~v~v~tVigFP~G~~~~~~K~~Ea~~Ai~~G 116 (251)
T d1o0ya_ 47 FATPDDIKKLCLEARENRFHGVCV-----N--PCYVKLARE---ELEGTDVKVVTVVGFPLGANETRTKAHEAIFAVESG 116 (251)
T ss_dssp TCCHHHHHHHHHHHHHHTCSEEEE-----C--GGGHHHHHH---HHTTSCCEEEEEESTTTCCSCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHhhcCceEEEE-----C--HHHHHHHHH---HhcCCCceEEeeccCCCCCCcHHHHHHHHHHHHHcC
Confidence 368999999999999999999999 2 112333333 2355777877644333 2 23456677789
Q ss_pred CCeEeccCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecC-CCHHHHHHHHHHHHhcCCCCCceeecccc
Q psy8199 786 LDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLS-ESRDQRAELIFQLANLNPYPESVPINNLV 864 (965)
Q Consensus 786 ~~~i~i~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~-et~ed~~~~l~~l~~l~~~~~~i~~~~~~ 864 (965)
.+-+.+-++- ..+ +...++...+-++.+.++=-....-+|+-.+ -+.+++....+...+.+ .++|..+
T Consensus 117 AdEID~Vin~-----~~l-~~g~~~~v~~ei~~v~~~~~~~~lKVIlEt~~L~~~e~~~a~~ia~~aG--adfvKTS--- 185 (251)
T d1o0ya_ 117 ADEIDMVINV-----GML-KAKEWEYVYEDIRSVVESVKGKVVKVIIETCYLDTEEKIAACVISKLAG--AHFVKTS--- 185 (251)
T ss_dssp CSEEEEECCH-----HHH-HTTCHHHHHHHHHHHHHHTTTSEEEEECCGGGCCHHHHHHHHHHHHHTT--CSEEECC---
T ss_pred CceEEEEecc-----chh-hcCCHHHHHHHHHHHHHHhcccceeeeecccccCcHHHHHHHHHHHHhC--cceeecc---
Confidence 9888766521 112 2445777777777766641122345677665 67888999999999999 8888654
Q ss_pred ccCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEE
Q psy8199 865 QIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSI 923 (965)
Q Consensus 865 P~~gT~l~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~ 923 (965)
|-+.. ...+++++..+.. ..-+...+.++++--.. +.....+.+||+.+
T Consensus 186 ----TGf~~-~gat~e~V~~m~~---~~~~~~giKasGGIrt~--~~a~~~i~aGa~ri 234 (251)
T d1o0ya_ 186 ----TGFGT-GGATAEDVHLMKW---IVGDEMGVKASGGIRTF--EDAVKMIMYGADRI 234 (251)
T ss_dssp ----CSSSS-CCCCHHHHHHHHH---HHCTTSEEEEESSCCSH--HHHHHHHHTTCSEE
T ss_pred ----CCCCC-CCcCHHHHHHHHH---HhCCCceEeccCCcCCH--HHHHHHHHHhhHHh
Confidence 32222 2345555443322 23345667777655442 23345588999974
|
| >d1m5wa_ c.1.24.1 (A:) Pyridoxine 5'-phosphate synthase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Pyridoxine 5'-phosphate synthase family: Pyridoxine 5'-phosphate synthase domain: Pyridoxine 5'-phosphate synthase species: Escherichia coli [TaxId: 562]
Probab=81.80 E-value=2.1 Score=40.28 Aligned_cols=109 Identities=14% Similarity=0.231 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHCCCCEEEEee---------ccCCCCcccHHHHHHHHHHHHhcCcEeEEecCCCCHHHHHHHHHhCCCe
Q psy8199 718 ESVITAAQKAKSDGATRFCMGA---------AWRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDY 788 (965)
Q Consensus 718 eei~~~~~~~~~~g~~~i~l~~---------g~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~e~l~~Lk~aG~~~ 788 (965)
+++++.+.+.+ -..++|+- |+.. .....+.+.++++.+++.++.+++=..+ +.+.++..++.|++.
T Consensus 76 ~e~i~ia~~~k---P~qvtLVPe~r~elTTegGld-~~~~~~~L~~~i~~l~~~girvSLFiDp-d~~~i~~a~~lGad~ 150 (242)
T d1m5wa_ 76 EEMLAIAVETK---PHFCCLVPEKRQEVTTEGGLD-VAGQRDKMRDACKRLADAGIQVSLFIDA-DEEQIKAAAEVGAPF 150 (242)
T ss_dssp HHHHHHHHHHC---CSEEEECCCCSSCSSCCSCCC-SGGGHHHHHHHHHHHHHTTCEEEEEECS-CHHHHHHHHHTTCSE
T ss_pred hhHHHHHHHhc---cceEEEeecCccccCcCCcee-ehhhHHHHHHHHHHHHhcCCeEEEEecc-chhhHHHHhhcCcce
Confidence 44555554332 45666652 2222 2345788999999999999998876554 899999999999999
Q ss_pred EeccCCCCHHHHhcccCCC----CHHHHHHHHHHHHHcCCceeeeEEEecCCCHH
Q psy8199 789 YNHNLDTSPKLYGDIISTR----DYENRLNTLKNVRNVGINICCGGIIGLSESRD 839 (965)
Q Consensus 789 i~i~~es~~~~~~~i~~~~----~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~e 839 (965)
|.+-- +.|.....+. ..+...++.+.+++.|+.|.+ |+|=+.+
T Consensus 151 IElhT----G~Ya~a~~~~~~~~el~~i~~aa~~A~~lGL~VnA----GHgLn~~ 197 (242)
T d1m5wa_ 151 IEIHT----GCYADAKTDAEQAQELARIAKAATFAASLGLKVNA----GHGLTYH 197 (242)
T ss_dssp EEEEC----HHHHHCCSHHHHHHHHHHHHHHHHHHHHTTCEEEE----ESSCCTT
T ss_pred eeeec----ccccccccchhhHHHHHHHHHHHHHHHhcCCcccC----CCCcCcc
Confidence 98775 4444433221 245677788889999998875 5653333
|
| >d1mxsa_ c.1.10.1 (A:) KDPG aldolase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Pseudomonas putida [TaxId: 303]
Probab=81.55 E-value=5 Score=37.11 Aligned_cols=164 Identities=10% Similarity=0.009 Sum_probs=101.3
Q ss_pred cCCCHHHHHHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHhcCcEeEE-ecCCCCHHHHHHHHHhCCCeEec
Q psy8199 713 KILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCL-TLGMLNENQAYRLKKVGLDYYNH 791 (965)
Q Consensus 713 ~~~~~eei~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~~~~~i~~-~~~~~~~e~l~~Lk~aG~~~i~i 791 (965)
+..++++.++.++.+.+.|++.+-++--. +.-.+.++.+++....+.+ -...++.+.++...++|.+.+.-
T Consensus 24 ~~~~~~~a~~~~~al~~~Gi~~iEitl~~--------p~a~~~i~~l~~~~p~~~vGaGTV~~~~~~~~a~~aGa~Fivs 95 (216)
T d1mxsa_ 24 TIAREEDILPLADALAAGGIRTLEVTLRS--------QHGLKAIQVLREQRPELCVGAGTVLDRSMFAAVEAAGAQFVVT 95 (216)
T ss_dssp CCSCGGGHHHHHHHHHHTTCCEEEEESSS--------THHHHHHHHHHHHCTTSEEEEECCCSHHHHHHHHHHTCSSEEC
T ss_pred ECCCHHHHHHHHHHHHHCCCCEEEEeCCC--------hhHHHHHHHHHHhCCCcceeeeeeecHHHHHHHHhCCCCEEEC
Confidence 34578999999999999999999885431 2345677777765445544 34566999999999999965422
Q ss_pred cCCCCHHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEecCCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCC
Q psy8199 792 NLDTSPKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPL 871 (965)
Q Consensus 792 ~~es~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l 871 (965)
. .. ..+.++.+++.|+.+..+.+ |..|+. .+.+++ .+.+.+++--
T Consensus 96 P-------------~~----~~~v~~~a~~~~i~~iPGv~-----TpsEi~----~A~~~G--~~~vKlFPA~------- 140 (216)
T d1mxsa_ 96 P-------------GI----TEDILEAGVDSEIPLLPGIS-----TPSEIM----MGYALG--YRRFKLFPAE------- 140 (216)
T ss_dssp S-------------SC----CHHHHHHHHHCSSCEECEEC-----SHHHHH----HHHTTT--CCEEEETTHH-------
T ss_pred C-------------CC----cHHHHHHHHhcCCCccCCcC-----CHHHHH----HHHHCC--CCEEEecccc-------
Confidence 2 11 14567789999998877665 666655 445666 6666555211
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeCCcc
Q psy8199 872 YGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKL 929 (965)
Q Consensus 872 ~~~~~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~ 929 (965)
..--...+...+-.+|+..+-..++-.. .++... |.+|+-..+.|..+
T Consensus 141 -------~~~g~~~ikal~~p~p~~~fiptGGV~~--~n~~~y-l~~~~v~avggs~l 188 (216)
T d1mxsa_ 141 -------ISGGVAAIKAFGGPFGDIRFCPTGGVNP--ANVRNY-MALPNVMCVGTTWM 188 (216)
T ss_dssp -------HHTHHHHHHHHHTTTTTCEEEEBSSCCT--TTHHHH-HHSTTBCCEEECTT
T ss_pred -------ccccHHHHHHHhcccccCceeccCCCCH--HHHHHH-HhcCCeEEEEcccc
Confidence 1111233444566788765544444332 334433 55565554555543
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| >d1xi3a_ c.1.3.1 (A:) Thiamin phosphate synthase {Archaeon (Pyrococcus furiosus) [TaxId: 2261]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Thiamin phosphate synthase family: Thiamin phosphate synthase domain: Thiamin phosphate synthase species: Archaeon (Pyrococcus furiosus) [TaxId: 2261]
Probab=80.05 E-value=21 Score=32.36 Aligned_cols=162 Identities=11% Similarity=0.119 Sum_probs=87.1
Q ss_pred HHHHHHHHHCCCCEEEEeeccCCCCcccHHHHHHHHHHHHh----cCcEeEEecCCCCHHHHHHHHHhCCCeEeccCCCC
Q psy8199 721 ITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKK----IGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTS 796 (965)
Q Consensus 721 ~~~~~~~~~~g~~~i~l~~g~~~~~~~~~~~~~~~~~~i~~----~~~~i~~~~~~~~~e~l~~Lk~aG~~~i~i~~es~ 796 (965)
.+.++++.+.|++-|.+= ....+.+++.++.+.+++ .+..+.++. .++...+.|+++++++.+..
T Consensus 20 ~~~v~~~l~~Gv~~vqlR-----~k~~~~~e~~~~a~~l~~i~~~~~~~liind------~~~lA~~~~adGvHl~~~~~ 88 (206)
T d1xi3a_ 20 VESVREALEGGATAIQMR-----IKNAPTREMYEIGKTLRQLTREYDALFFVDD------RVDVALAVDADGVQLGPEDM 88 (206)
T ss_dssp HHHHHHHHHTTCSEEEEC-----CCSCCHHHHHHHHHHHHHHHHHTTCEEEEES------CHHHHHHHTCSEEEECTTSC
T ss_pred HHHHHHHHHcCCCEEEEc-----CCCCCHHHHHHHHHHHHHHHHHcCCeEEech------hHHHHHhccCceEeeccccc
Confidence 345666778899987762 223334555555555543 677777763 23555678999999985431
Q ss_pred HHHHhcccCCCCHHHHHHHHHHHHHcCCceeeeEEEec-CCCHHHHHHHHHHHHhcCCCCCceeeccccccCCCCCCCCC
Q psy8199 797 PKLYGDIISTRDYENRLNTLKNVRNVGINICCGGIIGL-SESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSS 875 (965)
Q Consensus 797 ~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~Gl-~et~ed~~~~l~~l~~l~~~~~~i~~~~~~P~~gT~l~~~~ 875 (965)
+ . +. .+..+- ..++|. ..+.++... ....+ .+.+.+.+++|.+..| +.+
T Consensus 89 ~-----------~----~~---~~~~~~----~~iig~s~h~~~e~~~----a~~~g--~DYi~~gpvf~T~tk~--~~~ 138 (206)
T d1xi3a_ 89 P-----------I----EV---AKEIAP----NLIIGASVYSLEEALE----AEKKG--ADYLGAGSVFPTKTKE--DAR 138 (206)
T ss_dssp C-----------H----HH---HHHHCT----TSEEEEEESSHHHHHH----HHHHT--CSEEEEECSSCC------CCC
T ss_pred c-----------H----hh---hhhccc----ccccccccCCHHHHHH----HHhcC--CCEEEecccccccccc--ccc
Confidence 1 0 11 111111 124454 467766543 34567 8999999998865543 233
Q ss_pred CCCHHHHHHHHHHHHHHCCCCceeccccccccchhhHHHHhhcCccEEeeCCcccc
Q psy8199 876 ILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLT 931 (965)
Q Consensus 876 ~~~~~~~~~~ia~~R~~lp~~~i~i~~~~~~~~~~~~~~~l~~Gan~~~~g~~~~t 931 (965)
+...+.+.++... .+ ..+-.-++ +..+--..++.+||+++-+.+.+..
T Consensus 139 ~~g~~~l~~~~~~----~~-~Pv~AiGG---I~~~ni~~~~~~Ga~gvAvis~I~~ 186 (206)
T d1xi3a_ 139 VIGLEGLRKIVES----VK-IPVVAIGG---INKDNAREVLKTGVDGIAVISAVMG 186 (206)
T ss_dssp CCHHHHHHHHHHH----CS-SCEEEESS---CCTTTHHHHHTTTCSEEEESHHHHT
T ss_pred cccHHHHHHHHHh----cC-CCEEEECC---CCHHHHHHHHHhCCCEEEEhHHHHC
Confidence 4444444444332 22 22222222 2122233458899999887776543
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