Psyllid ID: psy8225

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------48
Protein Sequence
MFTVMEMPLSTQIPNVEGKAGMAAIVDTENSLDLKQLISGMQKTLPTYARPLFVRTIREVPMTGAYKYTVTFQVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMIGNGLRPQVWEPFQKRFGLDRICEFYGATEGNANLMNADGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC
Secondary Structure (PSIPRED)
ccccccEEcccccccccccccEEEEEcccccccHHHHHHHHHHccccccHHHHHHHccccccccccccEEEEEEccHHHHHHHHHHHcccccccEEEEEccccHHHHHHHHHHHHHccEEccccccccHHHHHHHHHHcccEEEEEccccHHHHHHHHccccccEEEEEccccccccccccccccccccccccccccccccccccccccEEEEEEccccccccccEEEcHHHHHHHHHHHHHHcccccccEEEEccHHHHHHHHHHHHHHHHHcccEEEEccccccccHHHHHHHcccEEEEEHHHHHHHHHccccccccccccEEEEEcccccHHHHHHHHHHHcccEEcccccccccccccccccccccccccccccccccccEEEEEEcccccccccccccccEEcccccccEEEEEEccccccccccccccccHHHHHHHHHccccccEEEEcccEEEEEccccEEEEccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHcccccccccHHHHccccccccHccccccccccHHHHHHHHHHHcccccEEEEcccEEcHHHHHHHHHHHHHHHHHcccccccEEEEEccccHHHHHHHHHHHHcccEEEEccccccHHHHHHHHHHcccEEEEEHHHHHHHHHHHHHHcccEEEEEEEEcccccccccccHHHHHHHHHHHHccccccccccccccccEEEEEccccccccccEEEccHHHHHHHHHHHHHHccccccEEEEEEcHHHHHHHHHHHHHHHHcccEEEEcccccHHHHHHHHHHccccEcccHHHHHHHHHHcccccccccHHEEEEccccccHHHHHHHHHHHcccEEEEcccccccccEEEEcccccccccccccccccccccEEEEEccccccEEEccccccccccccccEEEEEEccccccccHcccccccHHHHHHHHHcccccccccEEcccccEEccccEEEEEccccccc
Coil and Loop (DISEMBL)
mftvmemplstqipnvegkagMAAIVDTENSLDLKQLISGMQktlptyarplfvrtirevpmtgaykYTVTFQVEDHSNRIANffkskglqrgdAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVAECKAIIYGAELSEALTEvkdsipgislyaagtrrkpqakvlpsttlldeelpevsaksptedikknkpsdkLAYIYTsgttglpkAAVMTHVRAMFMAISGryqtgltsddvvyttlplyhtaggllGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLlavpekpedtqHSVKMMIgnglrpqvwepfqkrfgldricefygategnanlmnadgkvgavgyipyiaipfypvglikcdpetsepirnkdglcipckaeepgilIGMIKesraeshfngyadkkASEKKILRNVYshgdaafntgdilikdkfqyfyfkdrtgdac
Flexible Loop (DISEMBL)
MFTVMEMPLSTQIPNVEGKAGMAAIVDTENSLDLKQLISGMQktlptyarplFVRTIREVPMTGAYKYTVTFQVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISlyaagtrrkpqakvlpsttlldeelpevsaksptedikknkpsdkLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMIGNGLRPQVWEPFQKRFGLDRICEFYGATEGNANLMNADGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNGYADKKASEKKILRNVYSHGdaafntgdiliKDKFQYFYFKDRTGDAC
Low Complexity Region (SEG)
MFTVMEMPLSTQIPNVEGKAGMAAIVDTENSLDLKQLISGMQKTLPTYARPLFVRTIREVPMTGAYKYTVTFQVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAggllgigqcllggSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMIGNGLRPQVWEPFQKRFGLDRICEFYGATEGNANLMNADGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC
Disordered region (IsUnstruct)
*********************MAAIVDTENSLDLKQLISGMQKTLPTYARPLFVRTIREVPMTGAYKYTVTFQVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAA*****************************************LAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPE*******SVKMMIGNGLRPQVWEPFQKRFGLDRICEFYGATEGNANLMNADGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKES****HFNGYA******KKILRNVYSHGDAAFNTGDILIKDKFQYFYFK*******
Disordered Region (DISOPRED)
MFTVMEMPLSTQIPNVEGKAGMAAIVDTENSLDLKQLISGMQKTLPTYARPLFVRTIREVPMTGAYKYTVTFQVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELP***********KKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMIGNGLRPQVWEPFQKRFGLDRICEFYGATEGNANLMNADGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC
Disordered Region (DISEMBL)
MFTVMEMPLSTQIPNVEGKAGMAAIVDTENSLDLKQLISGMQKTLPTYARPLFVRTIREVPMTGAYKYTVTFQVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEEL**************NKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMIGNGLRPQVWEPFQKRFGLDRICEFYGATEGNANLMNADGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC
Disordered Region (DISPRO)
*FTVMEMPLSTQIPNVEGKAGMAAIVDTENSLDLKQLISGMQKTLPTYARPLFVRTIREVPMTGAYKYTVTFQVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMIGNGLRPQVWEPFQKRFGLDRICEFYGATEGNANLMNADGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRT****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFTVMEMPLSTQIPNVEGKAGMAAIVDTENSLDLKQLISGMQKTLPTYARPLFVRTIREVPMTGAYKYTVTFQVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMIGNGLRPQVWEPFQKRFGLDRICEFYGATEGNANLMNADGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	479	2.2.26 [Sep-21-2011]
Q60714	646	Long-chain fatty acid tra	yes	N/A	0.841	0.623	0.469	1e-112
Q6P1M0	643	Long-chain fatty acid tra	yes	N/A	0.893	0.665	0.458	1e-111
P97849	646	Long-chain fatty acid tra	yes	N/A	0.841	0.623	0.469	1e-111
Q6PCB7	646	Long-chain fatty acid tra	no	N/A	0.841	0.623	0.476	1e-111
Q4R3Y4	643	Long-chain fatty acid tra	N/A	N/A	0.878	0.654	0.448	1e-109
Q3ZKN0	646	Long-chain fatty acid tra	yes	N/A	0.841	0.623	0.469	1e-109
Q5RDY4	643	Long-chain fatty acid tra	yes	N/A	0.893	0.665	0.453	1e-109
Q91VE0	643	Long-chain fatty acid tra	no	N/A	0.837	0.623	0.472	1e-109
O14975	620	Very long-chain acyl-CoA	no	N/A	0.837	0.646	0.432	7e-87
O35488	620	Very long-chain acyl-CoA	no	N/A	0.832	0.643	0.423	1e-82

>sp|Q60714|S27A1_MOUSE Long-chain fatty acid transport protein 1 OS=Mus musculus GN=Slc27a1 PE=1 SV=1

 Score =  405 bits (1041), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 190/405 (46%), Positives = 269/405 (66%), Gaps = 2/405 (0%)

Query: 73  QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHIL 132
           Q++ +SN +AN F+  G   GD VA+F+EG+PE+V +WLGL+K GVVAA +N N R+  L
Sbjct: 108 QLDTYSNAVANLFRQLGFAPGDVVAVFLEGRPEFVGLWLGLAKAGVVAALLNVNLRREPL 167

Query: 133 IHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPE 192
              +  +  KA+IYG E++ A+ EV + + G SL    +       +LP T LLD  L E
Sbjct: 168 AFCLGTSAAKALIYGGEMAAAVAEVSEQL-GKSLLKFCSGDLGPESILPDTQLLDPMLAE 226

Query: 193 VSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVV 252
            +  +P          D+L YIYTSGTTGLPKAA++ H R   +A  G +   + + DV+
Sbjct: 227 -APTTPLAQAPGKGMDDRLFYIYTSGTTGLPKAAIVVHSRYYRIAAFGHHSYSMRAADVL 285

Query: 253 YTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLL 312
           Y  LPLYH+AG ++G+GQC++ G TVV+R KFSAS FW DC+KYNCTV QYIGE+CRYLL
Sbjct: 286 YDCLPLYHSAGNIMGVGQCVIYGLTVVLRKKFSASRFWDDCVKYNCTVVQYIGEICRYLL 345

Query: 313 AVPEKPEDTQHSVKMMIGNGLRPQVWEPFQKRFGLDRICEFYGATEGNANLMNADGKVGA 372
             P +  + +H V++ +GNGLRP +WE F +RFG+ +I EFYGATE N ++ N DGKVG+
Sbjct: 346 RQPVRDVEQRHRVRLAVGNGLRPAIWEEFTQRFGVPQIGEFYGATECNCSIANMDGKVGS 405

Query: 373 VGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNG 432
            G+   I    YP+ L+K + +T EP+R+ +GLCIPC+  EPG+L+G I +      F+G
Sbjct: 406 CGFNSRILTHVYPIRLVKVNEDTMEPLRDSEGLCIPCQPGEPGLLVGQINQQDPLRRFDG 465

Query: 433 YADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGD 477
           Y    A+ KKI  +V+  GD+A+ +GD+L+ D+  Y YF+DR+GD
Sbjct: 466 YVSDSATNKKIAHSVFRKGDSAYLSGDVLVMDELGYMYFRDRSGD 510

Involved in translocation of long-chain fatty acids (LFCA) across the plasma membrane. The LFCA import appears to be hormone-regulated in a tissue-specific manner. In adipocytes, but not myocytes, insulin induces a rapid translocation of FatP1 from intracellular compartments to the plasma membrane, paralleled by increased LFCA uptake. May act directly as a bona fide transporter, or alternatively, in a cytoplasmic or membrane-associated multimeric protein complex to trap and draw fatty acids towards accumulation. Plays a pivotal role in regulating available LFCA substrates from exogenous sources in tissues undergoing high levels of beta-oxidation or triglyceride synthesis. May be involved in regulation of cholesterol metabolism. Has acyl-CoA ligase activity for long-chain and very-long-chain fatty acids.
Mus musculus (taxid: 10090)
EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: -

>sp|Q6P1M0|S27A4_HUMAN Long-chain fatty acid transport protein 4 OS=Homo sapiens GN=SLC27A4 PE=1 SV=1

 Score =  402 bits (1034), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 203/443 (45%), Positives = 287/443 (64%), Gaps = 15/443 (3%)

Query: 42  QKTLPTYARPLFVRTIREVP------MTGAYKYTVTFQVEDHSNRIANFFKSKGLQRGDA 95
           ++T+P     LF  T+R  P        G   +    Q++++S+ +ANF +++GL  GD 
Sbjct: 73  RRTVPI----LFASTVRRHPDKTALIFEGTDTHWTFRQLDEYSSSVANFLQARGLASGDV 128

Query: 96  VALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVAECKAIIYGAELSEALT 155
            A+FME + E+V +WLG++K+GV AA INTN R+  L+H +  +  +A+++G+E++ A+ 
Sbjct: 129 AAIFMENRNEFVGLWLGMAKLGVEAALINTNLRRDALLHCLTTSRARALVFGSEMASAIC 188

Query: 156 EVKDSI-PGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTEDIKKNKPSDKLAYI 214
           EV  S+ P +SL+ +G+  +P A V PST  LD  L +     P+   K    +DKL YI
Sbjct: 189 EVHASLDPSLSLFCSGSW-EPGA-VPPSTEHLDPLLKDAPKHLPSCPDKGF--TDKLFYI 244

Query: 215 YTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLG 274
           YTSGTTGLPKAA++ H R   MA    Y   +  +D+VY  LPLYH+AG ++GIGQCLL 
Sbjct: 245 YTSGTTGLPKAAIVVHSRYYRMAALVYYGFRMRPNDIVYDCLPLYHSAGNIVGIGQCLLH 304

Query: 275 GSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMIGNGLR 334
           G TVVIR KFSAS FW DCIKYNCT+ QYIGE+CRYLL  P +  + QH V+M +GNGLR
Sbjct: 305 GMTVVIRKKFSASRFWDDCIKYNCTIVQYIGELCRYLLNQPPREAENQHQVRMALGNGLR 364

Query: 335 PQVWEPFQKRFGLDRICEFYGATEGNANLMNADGKVGAVGYIPYIAIPFYPVGLIKCDPE 394
             +W  F  RF + ++ EFYGATE N +L N D +VGA G+   I    YP+ L++ + +
Sbjct: 365 QSIWTNFSSRFHIPQVAEFYGATECNCSLGNFDSQVGACGFNSRILSFVYPIRLVRVNED 424

Query: 395 TSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNGYADKKASEKKILRNVYSHGDAA 454
           T E IR  DG+CIPC+  EPG L+G I +      F+GY ++ A+ KKI ++V+  GD A
Sbjct: 425 TMELIRGPDGVCIPCQPGEPGQLVGRIIQKDPLRRFDGYLNQGANNKKIAKDVFKKGDQA 484

Query: 455 FNTGDILIKDKFQYFYFKDRTGD 477
           + TGD+L+ D+  Y YF+DRTGD
Sbjct: 485 YLTGDVLVMDELGYLYFRDRTGD 507

Involved in translocation of long-chain fatty acids (LFCA) across the plasma membrane. Appears to be the principal fatty acid transporter in small intestinal enterocytes. Plays a role in the formation of the epidermal barrier. Required for fat absorption in early embryogenesis. Has acyl-CoA ligase activity for long-chain and very-long-chain fatty acids.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|P97849|S27A1_RAT Long-chain fatty acid transport protein 1 OS=Rattus norvegicus GN=Slc27a1 PE=2 SV=1

 Score =  402 bits (1032), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 190/405 (46%), Positives = 267/405 (65%), Gaps = 2/405 (0%)

Query: 73  QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHIL 132
           Q++ +SN +AN F   G   GD VA+F+EG+PE+V +WLGL+K GVVAA +N N R+  L
Sbjct: 108 QLDTYSNAVANLFLQLGFAPGDVVAVFLEGRPEFVGLWLGLAKAGVVAALLNVNLRREPL 167

Query: 133 IHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPE 192
              +  +  KA+IYG E++ A+ EV + + G SL    +       VLP T LLD  L E
Sbjct: 168 AFCLGTSAAKALIYGGEMAAAVAEVSEQL-GKSLLKFCSGDLGPESVLPDTQLLDPMLAE 226

Query: 193 VSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVV 252
            +  +P          D+L YIYTSGTTGLPKAA++ H R   +A  G +   + ++DV+
Sbjct: 227 -APTTPLAQAPGKGMDDRLFYIYTSGTTGLPKAAIVVHSRYYRIAAFGHHSYSMRANDVL 285

Query: 253 YTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLL 312
           Y  LPLYH+AG ++G+GQC++ G TVV+R KFSAS FW DC+KYNCTV QYIGE+CRYLL
Sbjct: 286 YDCLPLYHSAGNIMGVGQCIIYGLTVVLRKKFSASRFWDDCVKYNCTVVQYIGEICRYLL 345

Query: 313 AVPEKPEDTQHSVKMMIGNGLRPQVWEPFQKRFGLDRICEFYGATEGNANLMNADGKVGA 372
             P +  + +H V++ +GNGLRP +WE F + FG+ +I EFYGATE N ++ N DGKVG+
Sbjct: 346 RQPVRDVERRHRVRLAVGNGLRPAIWEEFTQGFGVRQIGEFYGATECNCSIANMDGKVGS 405

Query: 373 VGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNG 432
            G+   I    YP+ L+K + +T EP+R+  GLCIPC+  EPG+L+G I +      F+G
Sbjct: 406 CGFNSRILTHVYPIRLVKVNEDTMEPLRDSQGLCIPCQPGEPGLLVGQINQQDPLRRFDG 465

Query: 433 YADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGD 477
           Y    A+ KKI  +V+  GD+A+ +GD+L+ D+  Y YF+DR+GD
Sbjct: 466 YVSDSATNKKIAHSVFRKGDSAYLSGDVLVMDELGYMYFRDRSGD 510

Involved in translocation of long-chain fatty acids (LFCA) across the plasma membrane. The LFCA import appears to be hormone-regulated in a tissue-specific manner. In adipocytes, but not myocytes, insulin induces a rapid translocation of Fatp1 from intracellular compartments to the plasma membrane, paralleled by increased LFCA uptake. May act directly as a bona fide transporter, or alternatively, in a cytoplasmic or membrane-associated multimeric protein complex to trap and draw fatty acids towards accumulation. Plays a pivotal role in regulating available LFCA substrates from exogenous sources in tissues undergoing high levels of beta-oxidation or triglyceride synthesis. May be involved in regulation of cholesterol metabolism. Has acyl-CoA ligase activity for long-chain and very-long-chain fatty acids.

Rattus norvegicus (taxid: 10116)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q6PCB7|S27A1_HUMAN Long-chain fatty acid transport protein 1 OS=Homo sapiens GN=SLC27A1 PE=2 SV=1

 Score =  402 bits (1032), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 193/405 (47%), Positives = 268/405 (66%), Gaps = 2/405 (0%)

Query: 73  QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHIL 132
           Q++ +SN +AN F+  G   GD VA+F+EG+PE+V +WLGL+K G+ AA +N N R+  L
Sbjct: 108 QLDAYSNAVANLFRQLGFAPGDVVAIFLEGRPEFVGLWLGLAKAGMEAALLNVNLRREPL 167

Query: 133 IHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPE 192
              +  +  KA+I+G E+  A+ EV   + G SL    +       +LP T LLD  L E
Sbjct: 168 AFCLGTSGAKALIFGGEMVAAVAEVSGHL-GKSLIKFCSGDLGPEGILPDTHLLDPLLKE 226

Query: 193 VSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVV 252
            S  +P   I      D+L YIYTSGTTGLPKAA++ H R   MA  G +   + + DV+
Sbjct: 227 AST-APLAQIPSKGMDDRLFYIYTSGTTGLPKAAIVVHSRYYRMAAFGHHAYRMQAADVL 285

Query: 253 YTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLL 312
           Y  LPLYH+AG ++G+GQCL+ G TVV+R KFSAS FW DCIKYNCTV QYIGE+CRYLL
Sbjct: 286 YDCLPLYHSAGNIIGVGQCLIYGLTVVLRKKFSASRFWDDCIKYNCTVVQYIGEICRYLL 345

Query: 313 AVPEKPEDTQHSVKMMIGNGLRPQVWEPFQKRFGLDRICEFYGATEGNANLMNADGKVGA 372
             P +  + +H V++ +GNGLRP +WE F +RFG+ +I EFYGATE N ++ N DGKVG+
Sbjct: 346 KQPVREAERRHRVRLAVGNGLRPAIWEEFTERFGVRQIGEFYGATECNCSIANMDGKVGS 405

Query: 373 VGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNG 432
            G+   I    YP+ L+K + +T E +R+  GLCIPC+A EPG+L+G I +      F+G
Sbjct: 406 CGFNSRILPHVYPIRLVKVNEDTMELLRDAQGLCIPCQAGEPGLLVGQINQQDPLRRFDG 465

Query: 433 YADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGD 477
           Y  + A+ KKI  +V+S GD+A+ +GD+L+ D+  Y YF+DR+GD
Sbjct: 466 YVSESATSKKIAHSVFSKGDSAYLSGDVLVMDELGYMYFRDRSGD 510

Involved in translocation of long-chain fatty acids (LFCA) across the plasma membrane. The LFCA import appears to be hormone-regulated in a tissue-specific manner. In adipocytes, but not myocytes, insulin induces a rapid translocation of FATP1 from intracellular compartments to the plasma membrane, paralleled by increased LFCA uptake. May act directly as a bona fide transporter, or alternatively, in a cytoplasmic or membrane-associated multimeric protein complex to trap and draw fatty acids towards accumulation. Plays a pivotal role in regulating available LFCA substrates from exogenous sources in tissues undergoing high levels of beta-oxidation or triglyceride synthesis. May be involved in regulation of cholesterol metabolism. Has acyl-CoA ligase activity for long-chain and very-long-chain fatty acids.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q4R3Y4|S27A4_MACFA Long-chain fatty acid transport protein 4 OS=Macaca fascicularis GN=SLC27A4 PE=2 SV=1

 Score =  397 bits (1020), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 202/450 (44%), Positives = 286/450 (63%), Gaps = 29/450 (6%)

Query: 42  QKTLPTYARPLFVRTIREVP------MTGAYKYTVTFQVEDHSNRIANFFKSKGLQRGDA 95
           ++T+P     LF  T+R  P        G   +    Q++++S+ +ANF +++GL  GD 
Sbjct: 73  RRTVPI----LFASTVRRHPDKTALIFEGTDTHWTFRQLDEYSSSVANFLQARGLASGDV 128

Query: 96  VALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVAECKAIIYGAELSEALT 155
            A+FME + E+V +WLG++K+GV AA INTN R+  L+H +  +  +A+++G+E++ A+ 
Sbjct: 129 AAIFMENRNEFVGLWLGMAKLGVEAALINTNLRRDALLHCLTTSRARALVFGSEMASAIC 188

Query: 156 EVKDSI-PGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTEDIKKNKPS------ 208
           E+  S+ P +SL+ +G+  +P A V  ST  LD  L         ED  K+ PS      
Sbjct: 189 EIHASLDPSLSLFCSGSW-EPNA-VPTSTEHLDPLL---------EDAPKHLPSCPDKGF 237

Query: 209 -DKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLG 267
            DKL YIYTSGTTGLPKAA++ H R   MA    Y   +  +D++Y  LPLYH+AG ++G
Sbjct: 238 TDKLFYIYTSGTTGLPKAAIVVHSRYYRMAALVYYGFRMRPNDIIYDCLPLYHSAGNIVG 297

Query: 268 IGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKM 327
           IGQCLL G TVVIR KFSAS FW DCIKY CT+ QYIGE+CRYLL  P +  + QH V+M
Sbjct: 298 IGQCLLHGMTVVIRKKFSASRFWDDCIKYKCTIVQYIGELCRYLLNQPPREAENQHQVRM 357

Query: 328 MIGNGLRPQVWEPFQKRFGLDRICEFYGATEGNANLMNADGKVGAVGYIPYIAIPFYPVG 387
            +GNGLR  +W  F  RF + ++ EFYGATE N +L N D +VGA G+   I    YP+ 
Sbjct: 358 ALGNGLRQSIWTNFSSRFHIPQVAEFYGATECNCSLGNFDSQVGACGFNSRILSFVYPIR 417

Query: 388 LIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNGYADKKASEKKILRNV 447
           L++ + +T E IR  DG+CIPC+  EPG L+G I +      F+GY ++ A+ KKI ++V
Sbjct: 418 LVRVNEDTMELIRGPDGICIPCQPGEPGQLVGRIIQKDPLRRFDGYLNQGANNKKIAKDV 477

Query: 448 YSHGDAAFNTGDILIKDKFQYFYFKDRTGD 477
           +  GD A+ TGD+L+ D+  Y YF+DRTGD
Sbjct: 478 FKKGDQAYLTGDVLVMDELGYLYFRDRTGD 507

Involved in translocation of long-chain fatty acids (LFCA) across the plasma membrane. Appears to be the principal fatty acid transporter in small intestinal enterocytes. Plays a role in the formation of the epidermal barrier. Required for fat absorption in early embryogenesis. Has acyl-CoA ligase activity for long-chain and very-long-chain fatty acids.

Macaca fascicularis (taxid: 9541)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q3ZKN0|S27A1_BOVIN Long-chain fatty acid transport protein 1 OS=Bos taurus GN=SLC27A1 PE=2 SV=1

 Score =  397 bits (1019), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 190/405 (46%), Positives = 265/405 (65%), Gaps = 2/405 (0%)

Query: 73  QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHIL 132
           Q++ +SN +AN F+  G   GD VA+FMEG+PE+V +WLGL+K GV AA +N N R+  L
Sbjct: 108 QLDAYSNAVANLFRRLGFAPGDVVAIFMEGRPEFVGLWLGLAKAGVEAALLNVNLRREPL 167

Query: 133 IHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPE 192
              +  +  KA+++G EL+ A+ E+   + G SL    +       V P T LLD  L E
Sbjct: 168 AFCLGTSGAKALVFGGELAAAVAEMSGEL-GKSLVKFCSGDVGPDGVFPDTQLLDPLLKE 226

Query: 193 VSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVV 252
            S  +P          D+L YIYTSGTTGLPKAA++ H R   +A  G Y   + + DV+
Sbjct: 227 TST-APLAQPPGKGMDDRLFYIYTSGTTGLPKAAIIVHSRYYRIAAFGHYSYSMQAADVL 285

Query: 253 YTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLL 312
           Y  LPLYH+AG ++G+GQCL+ G TVV+R KFSAS FW DC+KYNCTV QYIGE+CRYLL
Sbjct: 286 YDCLPLYHSAGNIMGVGQCLIYGLTVVLRKKFSASRFWDDCVKYNCTVVQYIGEICRYLL 345

Query: 313 AVPEKPEDTQHSVKMMIGNGLRPQVWEPFQKRFGLDRICEFYGATEGNANLMNADGKVGA 372
             P +  + +H V++ +GNGLRP +WE F +RFG+ +I EFYGATE N ++ N DGKVG+
Sbjct: 346 KQPVREAEGRHRVRLAVGNGLRPSIWEEFTERFGVRQIGEFYGATECNCSIANMDGKVGS 405

Query: 373 VGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNG 432
            G+   I    YP+ L+K + +T E +R+  GLCIPC+  EPG+L+G I +      F+G
Sbjct: 406 RGFNSRILPHVYPIRLVKVNEDTMELLRDAQGLCIPCQTGEPGLLVGQINQQDPLRRFDG 465

Query: 433 YADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGD 477
           Y  + A+ KKI  +V+  GD+A+ +GD+L+ D+  Y YF+DR+GD
Sbjct: 466 YISESATSKKIAHSVFRKGDSAYLSGDVLVMDELGYMYFRDRSGD 510

Involved in translocation of long-chain fatty acids (LFCA) across the plasma membrane. The LFCA import appears to be hormone-regulated in a tissue-specific manner. In adipocytes, but not myocytes, insulin induces a rapid translocation of FATP1 from intracellular compartments to the plasma membrane, paralleled by increased LFCA uptake. May act directly as a bona fide transporter, or alternatively, in a cytoplasmic or membrane-associated multimeric protein complex to trap and draw fatty acids towards accumulation. Plays a pivotal role in regulating available LFCA substrates from exogenous sources in tissues undergoing high levels of beta-oxidation or triglyceride synthesis. May be involved in regulation of cholesterol metabolism. Has acyl-CoA ligase activity for long-chain and very-long-chain fatty acids.

Bos taurus (taxid: 9913)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q5RDY4|S27A4_PONAB Long-chain fatty acid transport protein 4 OS=Pongo abelii GN=SLC27A4 PE=2 SV=1

 Score =  397 bits (1019), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 201/443 (45%), Positives = 286/443 (64%), Gaps = 15/443 (3%)

Query: 42  QKTLPTYARPLFVRTIREVPMTGAYKYTVT------FQVEDHSNRIANFFKSKGLQRGDA 95
           ++T+P     LF  T+R  P   A  +  T       Q++++S+ +ANF +++GL  GD 
Sbjct: 73  RRTVPI----LFASTVRRHPDKTALIFEGTDTLWTFRQLDEYSSSVANFLQARGLASGDV 128

Query: 96  VALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVAECKAIIYGAELSEALT 155
            A+FME + E+V +WLG++K+GV AA INTN R+   +H +  +  +A+++G+E++ A+ 
Sbjct: 129 AAIFMENRNEFVGLWLGMAKLGVEAALINTNLRRDAQLHCLTTSRARALVFGSEMASAIC 188

Query: 156 EVKDSI-PGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTEDIKKNKPSDKLAYI 214
           E+  S+ P +SL+ +G+  +P A V  ST  LD  L +     P    K    +DKL YI
Sbjct: 189 EIHASLDPSLSLFCSGSW-EPNA-VPTSTEHLDPLLKDAPKHLPICPDKGF--TDKLFYI 244

Query: 215 YTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLG 274
           YTSGTTGLPKAA++ H R   MA    Y   +  +D+VY  LPLYH+AG ++GIGQCLL 
Sbjct: 245 YTSGTTGLPKAAIVVHSRYYRMAALVYYGFRMRPNDIVYDCLPLYHSAGNIVGIGQCLLH 304

Query: 275 GSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMIGNGLR 334
           G TVVIR KFSAS FW DCIKYNCT+ QYIGE+CRYLL  P +  + QH V+M +GNGLR
Sbjct: 305 GMTVVIRKKFSASRFWDDCIKYNCTIVQYIGELCRYLLNQPPREAENQHQVRMALGNGLR 364

Query: 335 PQVWEPFQKRFGLDRICEFYGATEGNANLMNADGKVGAVGYIPYIAIPFYPVGLIKCDPE 394
             +W  F  RF + ++ EFYGATE N +L N D +VGA G+   I    YP+ L++ + +
Sbjct: 365 QSIWTNFSSRFHIPQVAEFYGATECNCSLGNFDSQVGACGFNSRILSFVYPIRLVRVNED 424

Query: 395 TSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNGYADKKASEKKILRNVYSHGDAA 454
           T E IR  DG+CIPC+  EPG L+G I +      F+GY ++ A++KKI ++V+  GD A
Sbjct: 425 TMELIRGPDGICIPCQPGEPGQLVGRIIQKDPLRRFDGYLNQGANDKKIAKDVFKKGDQA 484

Query: 455 FNTGDILIKDKFQYFYFKDRTGD 477
           + TGD+L+ D+  Y YF+DRTGD
Sbjct: 485 YLTGDVLVMDELGYLYFRDRTGD 507

Involved in translocation of long-chain fatty acids (LFCA) across the plasma membrane. Appears to be the principal fatty acid transporter in small intestinal enterocytes. Plays a role in the formation of the epidermal barrier. Required for fat absorption in early embryogenesis. Has acyl-CoA ligase activity for long-chain and very-long-chain fatty acids.

Pongo abelii (taxid: 9601)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q91VE0|S27A4_MOUSE Long-chain fatty acid transport protein 4 OS=Mus musculus GN=Slc27a4 PE=1 SV=1

 Score =  396 bits (1017), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 192/406 (47%), Positives = 271/406 (66%), Gaps = 5/406 (1%)

Query: 73  QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHIL 132
           Q++++S+ +ANF +++GL  G+ VALFME + E+V +WLG++K+GV AA INTN R+  L
Sbjct: 106 QLDEYSSSVANFLQARGLASGNVVALFMENRNEFVGLWLGMAKLGVEAALINTNLRRDAL 165

Query: 133 IHSIKVAECKAIIYGAELSEALTEVKDSI-PGISLYAAGTRRKPQAKVLPSTTLLDEELP 191
            H +  ++ +A+I+G+E++ A+ E+  S+ P +SL+ +G+       V  ST  LD  L 
Sbjct: 166 RHCLDTSKARALIFGSEMASAICEIHASLEPTLSLFCSGSWEPSTVPV--STEHLDPLLE 223

Query: 192 EVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDV 251
           +     P+   K    +DKL YIYTSGTTGLPKAA++ H R   MA    Y   +  DD+
Sbjct: 224 DAPKHLPSHPDKGF--TDKLFYIYTSGTTGLPKAAIVVHSRYYRMASLVYYGFRMRPDDI 281

Query: 252 VYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYL 311
           VY  LPLYH+AG ++GIGQCLL G TVVIR KFSAS FW DCIKYNCT+ QYIGE+CRYL
Sbjct: 282 VYDCLPLYHSAGNIVGIGQCLLHGMTVVIRKKFSASRFWDDCIKYNCTIVQYIGELCRYL 341

Query: 312 LAVPEKPEDTQHSVKMMIGNGLRPQVWEPFQKRFGLDRICEFYGATEGNANLMNADGKVG 371
           L  P +  +++H V+M +GNGLR  +W  F  RF + ++ EFYGATE N +L N D +VG
Sbjct: 342 LNQPPREAESRHKVRMALGNGLRQSIWTDFSSRFHIPQVAEFYGATECNCSLGNFDSRVG 401

Query: 372 AVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFN 431
           A G+   I    YP+ L++ + +T E IR  DG+CIPC+  +PG L+G I +      F+
Sbjct: 402 ACGFNSRILSFVYPIRLVRVNEDTMELIRGPDGVCIPCQPGQPGQLVGRIIQQDPLRRFD 461

Query: 432 GYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGD 477
           GY ++ A+ KKI  +V+  GD A+ TGD+L+ D+  Y YF+DRTGD
Sbjct: 462 GYLNQGANNKKIANDVFKKGDQAYLTGDVLVMDELGYLYFRDRTGD 507

Involved in translocation of long-chain fatty acids (LFCA) across the plasma membrane. Appears to be the principal fatty acid transporter in small intestinal enterocytes. Plays a role in the formation of the epidermal barrier. Required for fat absorption in early embryogenesis. Has acyl-CoA ligase activity for long-chain and very-long-chain fatty acids.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|O14975|S27A2_HUMAN Very long-chain acyl-CoA synthetase OS=Homo sapiens GN=SLC27A2 PE=1 SV=2

 Score =  321 bits (823), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 179/414 (43%), Positives = 246/414 (59%), Gaps = 13/414 (3%)

Query: 69  TVTF-QVEDHSNRIANFFKSK-GLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTN 126
           T+T+ QV+  SN++A       GL++GD VAL M  +P YV +WLGL K+G   A +N N
Sbjct: 78  TLTYAQVDRRSNQVARALHDHLGLRQGDCVALLMGNEPAYVWLWLGLVKLGCAMACLNYN 137

Query: 127 QRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIP--GISLYAAGTRRKPQAKVLPSTT 184
            R   L+H  +    K ++   EL  A+ E+  S+    +S+Y   +R      +     
Sbjct: 138 IRAKSLLHCFQCCGAKVLLVSPELQAAVEEILPSLKKDDVSIYYV-SRTSNTDGIDSFLD 196

Query: 185 LLDEELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQT 244
            +DE   E   +S   ++  + P+    YIYTSGTTGLPKAA++TH R ++      + +
Sbjct: 197 KVDEVSTEPIPESWRSEVTFSTPA---LYIYTSGTTGLPKAAMITHQR-IWYGTGLTFVS 252

Query: 245 GLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQYI 304
           GL +DDV+Y TLP YH+A  L+GI  C++ G+T+ +R+KFSAS FW DC KYN TV QYI
Sbjct: 253 GLKADDVIYITLPFYHSAALLIGIHGCIVAGATLALRTKFSASQFWDDCRKYNVTVIQYI 312

Query: 305 GEMCRYLLAVPEKPEDTQHSVKMMIGNGLRPQVWEPFQKRFGLDRICEFYGATEGNANLM 364
           GE+ RYL   P+KP D  H V++ +GNGLR  VW  F KRFG   I EFY ATEGN   M
Sbjct: 313 GELLRYLCNSPQKPNDRDHKVRLALGNGLRGDVWRQFVKRFGDICIYEFYAATEGNIGFM 372

Query: 365 NADGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKES 424
           N   KVGAVG + Y+        LIK D E  EP+R+++G C+     E G+L+  I + 
Sbjct: 373 NYARKVGAVGRVNYLQKKIITYDLIKYDVEKDEPVRDENGYCVRVPKGEVGLLVCKITQL 432

Query: 425 RAESHFNGYADKKA-SEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGD 477
              + FNGYA  KA +EKK LR+V+  GD  FN+GD+L+ D   + YF DR GD
Sbjct: 433 ---TPFNGYAGAKAQTEKKKLRDVFKKGDLYFNSGDLLMVDHENFIYFHDRVGD 483

Acyl-CoA synthetase probably involved in bile acid metabolism. Proposed to activate C27 precurors of bile acids to their CoA thioesters derivatives before side chain cleavage via peroxisomal beta-oxidation occurs. In vitro, activates 3-alpha,7-alpha,12-alpha-trihydroxy-5-beta-cholestanate (THCA), the C27 precursor of cholic acid deriving from the de novo synthesis from cholesterol. Does not utilize C24 bile acids as substrates. In vitro, also activates long- and branched-chain fatty acids and may have additional roles in fatty acid metabolism. May be involved in translocation of long-chain fatty acids (LFCA) across membranes.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|O35488|S27A2_MOUSE Very long-chain acyl-CoA synthetase OS=Mus musculus GN=Slc27a2 PE=1 SV=2

 Score =  307 bits (787), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 176/416 (42%), Positives = 246/416 (59%), Gaps = 17/416 (4%)

Query: 69  TVTF-QVEDHSNRIANFFKSK-GLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTN 126
           T+T+ QV+  SN++A     + GL++GD VALFM  +P YV +WLGL K+G   A +N N
Sbjct: 78  TLTYAQVDRRSNQVARALHDQLGLRQGDCVALFMGNEPAYVWIWLGLLKLGCPMACLNYN 137

Query: 127 QRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLL 186
            R   L+H  +    K ++   +L EA+ EV  ++   ++      R      +   T+L
Sbjct: 138 IRAKSLLHCFQCCGAKVLLASPDLQEAVEEVLPTLKKDAVSVFYVSRTSNTNGV--DTIL 195

Query: 187 DEELPEVSAKSPTEDIKKNKP-SDKLAYIYTSGTTGLPKAAVMTHVRAMF---MAISGRY 242
           D+ +  VSA+   E  +     +    YIYTSGTTGLPKAA + H R  +   +A+S   
Sbjct: 196 DK-VDGVSAEPTPESWRSEVTFTTPAVYIYTSGTTGLPKAATINHHRLWYGTGLAMS--- 251

Query: 243 QTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQ 302
            +G+T+ DV+YTT+PLYH+A  ++G+  C++ G+T+ +RSKFSAS FW DC KYN TV Q
Sbjct: 252 -SGITAQDVIYTTMPLYHSAALMIGLHGCIVVGATLALRSKFSASQFWDDCRKYNVTVIQ 310

Query: 303 YIGEMCRYLLAVPEKPEDTQHSVKMMIGNGLRPQVWEPFQKRFGLDRICEFYGATEGNAN 362
           YIGE+ RYL   P+KP D  H VK  +GNGLR  VW  F KRFG   + EFY +TEGN  
Sbjct: 311 YIGELLRYLCNTPQKPNDRDHKVKKALGNGLRGDVWREFIKRFGDIHVYEFYASTEGNIG 370

Query: 363 LMNADGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIK 422
            +N   K+GAVG   Y+        LIK D E  EP+R+ +G CI     E G+L+  I 
Sbjct: 371 FVNYPRKIGAVGRANYLQRKVARYELIKYDVEKDEPVRDANGYCIKVPKGEVGLLVCKIT 430

Query: 423 ESRAESHFNGYA-DKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGD 477
           +    + F GYA  K  +EKK LR+V+  GD  FN+GD+L+ D+  + YF DR GD
Sbjct: 431 QL---TPFIGYAGGKTQTEKKKLRDVFKKGDIYFNSGDLLMIDRENFVYFHDRVGD 483

Acyl-CoA synthetase probably involved in bile acid metabolism. Proposed to activate C27 precurors of bile acids to their CoA thioesters derivatives before side chain cleavage via peroxisomal beta-oxidation occurs. In vitro, activates 3-alpha,7-alpha,12-alpha-trihydroxy-5-beta-cholestanate (THCA), the C27 precursor of cholic acid deriving from the de novo synthesis from cholesterol. Does not utilize C24 bile acids as substrates. In vitro, also activates long- and branched-chain fatty acids and may have additional roles in fatty acid metabolism (By similarity). May be involved in translocation of long-chain fatty acids (LFCA) across membranes.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	479
193580113	662	PREDICTED: long-chain fatty acid transpo	0.889	0.643	0.536	1e-137
91086105	623	PREDICTED: similar to AMP dependent liga	0.899	0.691	0.526	1e-133
270010218	618	hypothetical protein TcasGA2_TC009593, p	0.899	0.697	0.526	1e-133
380021552	733	PREDICTED: long-chain fatty acid transpo	0.828	0.541	0.539	1e-132
328787757	735	PREDICTED: long-chain fatty acid transpo	0.828	0.540	0.539	1e-131
242022874	576	Long-chain fatty acid transport protein,	0.847	0.704	0.539	1e-131
350409131	736	PREDICTED: long-chain fatty acid transpo	0.828	0.539	0.534	1e-131
340712760	587	PREDICTED: long-chain fatty acid transpo	0.828	0.676	0.534	1e-130
345488877	734	PREDICTED: long-chain fatty acid transpo	0.841	0.549	0.538	1e-129
322802840	534	hypothetical protein SINV_09456 [Solenop	0.841	0.754	0.525	1e-128

>gi|193580113|ref|XP_001944545.1| PREDICTED: long-chain fatty acid transport protein 4-like [Acyrthosiphon pisum]

 Score =  494 bits (1272), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 240/447 (53%), Positives = 314/447 (70%), Gaps = 21/447 (4%)

Query: 47  TYARPLFVRTIREVPMTGAYKYTVT----FQVEDHSNRIANFFKSKGLQRGDAVALFMEG 102
           TYA+ +F R + + P   A+K+  +     +VE+ SN+IAN+FK +GL+RGD VAL+ME 
Sbjct: 85  TYAK-IFKRNVEKHPNKIAFKHEGSTWRYIEVEEFSNQIANYFKEQGLKRGDIVALYMES 143

Query: 103 QPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIP 162
            PEYVC+WLGLSKIGV+ A IN N R   L HSIKV+ C  +I G E   AL EV ++  
Sbjct: 144 CPEYVCIWLGLSKIGVIVALINNNLRADTLAHSIKVSNCSVVIIGKEQINALVEVINTTT 203

Query: 163 GISLYAAGTRRKPQAK-------VLPSTTL-----LDEELPEVSAKSPTEDIKKNKPSDK 210
              L    T      K        L +T++     LD EL E+S  +P +DI +    D+
Sbjct: 204 DDKLNHLFTNTNVYIKNYIDDTSSLINTSISKAINLDYELKEISKSAPVKDISEGSSKDQ 263

Query: 211 LAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQ 270
           + YIYTSGTTG+PKAA+MT  RA++MA+  ++  G+T  DVVYT LPLYHTAGG+LG+  
Sbjct: 264 MLYIYTSGTTGMPKAAIMTQSRAIYMAMGAKHIAGITEYDVVYTPLPLYHTAGGILGVSS 323

Query: 271 CLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMIG 330
            LLGGST VIRSKFSASN+W DC+KY CTVAQYIGEMCRY LA P    D  H V++++G
Sbjct: 324 VLLGGSTCVIRSKFSASNYWTDCLKYECTVAQYIGEMCRYCLASPPSDADKTHQVRLILG 383

Query: 331 NGLRPQVWEPFQKRFGLDRICEFYGATEGNANLMNADGKVGAVGYIPYIAIPFYPVGLIK 390
           NGLRPQ+W  F  RF + ++ EFYGATEGNAN+MN   KVGAVG+IP+I  PFYPV LI+
Sbjct: 384 NGLRPQIWNDFITRFNIKKVAEFYGATEGNANMMNTTNKVGAVGFIPFIGEPFYPVTLIR 443

Query: 391 CDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNGYADKKASEKKILRNVYSH 450
            DP+T+EPIR ++ LCI CK   PG+L+G I+++  E+ F+GY +K ASEKKI+++V+S 
Sbjct: 444 VDPDTNEPIRGENNLCIKCK---PGLLVGKIRKT-TENSFSGYVEKSASEKKIIKDVFSK 499

Query: 451 GDAAFNTGDILIKDKFQYFYFKDRTGD 477
           GD  FN+GD+LI+D+  +FYFKDRTGD
Sbjct: 500 GDKVFNSGDVLIRDEHNFFYFKDRTGD 526

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91086105|ref|XP_967675.1| PREDICTED: similar to AMP dependent ligase [Tribolium castaneum]

 Score =  480 bits (1236), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 232/441 (52%), Positives = 312/441 (70%), Gaps = 10/441 (2%)

Query: 42  QKTLPTYARPLFVRTIREVPMTGAYKY---TVTFQ-VEDHSNRIANFFKSKGLQRGDAVA 97
           +KT  T A+ +F + + + P   A+ +     TF+ V+ +SN+IA++FK++G +RGDAVA
Sbjct: 52  EKTNQTVAK-IFTKLVAKHPQKVAFYFESEIWTFEDVDKYSNKIAHYFKNEGFKRGDAVA 110

Query: 98  LFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVAECKAIIYGAELSEALTEV 157
           L +E +PEYV +WLGL+KIGVV A IN+N     L HSI+VA+ KA++YG++ ++ + ++
Sbjct: 111 LVLESRPEYVTLWLGLAKIGVVTALINSNLVADPLAHSIQVADAKAVVYGSDFAKGINDI 170

Query: 158 KDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTEDIKKNKPSDKLAYIYTS 217
              IP + LY  G       ++LP++  L +EL +      T DIK  KP DKL +I+TS
Sbjct: 171 SGKIPKVKLYQFG----KSDQLLPNSVDLIKELEKEQDGPLTSDIKSGKPRDKLLFIFTS 226

Query: 218 GTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGST 277
           GTTGLPKAAV+T++R  FMA+  RY   +T DD++Y  LPLYH+AG ++G+GQC+L G+T
Sbjct: 227 GTTGLPKAAVITNLRFFFMALGIRYMAVITEDDIIYDPLPLYHSAGAIVGVGQCILKGTT 286

Query: 278 VVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDT-QHSVKMMIGNGLRPQ 336
           VVIR KFSAS FW DCIKY CTVAQYIGE+CRYLLA     + +  H V  M+GNGLRPQ
Sbjct: 287 VVIRKKFSASYFWVDCIKYRCTVAQYIGEICRYLLAAHASDDRSIPHQVTKMLGNGLRPQ 346

Query: 337 VWEPFQKRFGLDRICEFYGATEGNANLMNADGKVGAVGYIPYIAIPFYPVGLIKCDPETS 396
           +W  F  RFG+  + EFYGATEGN+NL+N D KVGAVG++P  A  FYPV LIKCD ET 
Sbjct: 347 IWNKFVTRFGVKEVYEFYGATEGNSNLINIDSKVGAVGFVPRYASIFYPVTLIKCDEETG 406

Query: 397 EPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNGYADKKASEKKILRNVYSHGDAAFN 456
            PIRN DG C  C   EPG+ IG++   +  + F GYADKKA+EKK++ NV+  GD  FN
Sbjct: 407 APIRNSDGFCQRCDPGEPGVCIGIVNPKKTVNDFAGYADKKATEKKLIENVFKKGDRYFN 466

Query: 457 TGDILIKDKFQYFYFKDRTGD 477
           +GDILI+D+F Y++FKDRTGD
Sbjct: 467 SGDILIQDEFGYYFFKDRTGD 487

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270010218|gb|EFA06666.1| hypothetical protein TcasGA2_TC009593, partial [Tribolium castaneum]

 Score =  480 bits (1236), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 232/441 (52%), Positives = 312/441 (70%), Gaps = 10/441 (2%)

Query: 42  QKTLPTYARPLFVRTIREVPMTGAYKY---TVTFQ-VEDHSNRIANFFKSKGLQRGDAVA 97
           +KT  T A+ +F + + + P   A+ +     TF+ V+ +SN+IA++FK++G +RGDAVA
Sbjct: 47  EKTNQTVAK-IFTKLVAKHPQKVAFYFESEIWTFEDVDKYSNKIAHYFKNEGFKRGDAVA 105

Query: 98  LFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVAECKAIIYGAELSEALTEV 157
           L +E +PEYV +WLGL+KIGVV A IN+N     L HSI+VA+ KA++YG++ ++ + ++
Sbjct: 106 LVLESRPEYVTLWLGLAKIGVVTALINSNLVADPLAHSIQVADAKAVVYGSDFAKGINDI 165

Query: 158 KDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTEDIKKNKPSDKLAYIYTS 217
              IP + LY  G       ++LP++  L +EL +      T DIK  KP DKL +I+TS
Sbjct: 166 SGKIPKVKLYQFG----KSDQLLPNSVDLIKELEKEQDGPLTSDIKSGKPRDKLLFIFTS 221

Query: 218 GTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGST 277
           GTTGLPKAAV+T++R  FMA+  RY   +T DD++Y  LPLYH+AG ++G+GQC+L G+T
Sbjct: 222 GTTGLPKAAVITNLRFFFMALGIRYMAVITEDDIIYDPLPLYHSAGAIVGVGQCILKGTT 281

Query: 278 VVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDT-QHSVKMMIGNGLRPQ 336
           VVIR KFSAS FW DCIKY CTVAQYIGE+CRYLLA     + +  H V  M+GNGLRPQ
Sbjct: 282 VVIRKKFSASYFWVDCIKYRCTVAQYIGEICRYLLAAHASDDRSIPHQVTKMLGNGLRPQ 341

Query: 337 VWEPFQKRFGLDRICEFYGATEGNANLMNADGKVGAVGYIPYIAIPFYPVGLIKCDPETS 396
           +W  F  RFG+  + EFYGATEGN+NL+N D KVGAVG++P  A  FYPV LIKCD ET 
Sbjct: 342 IWNKFVTRFGVKEVYEFYGATEGNSNLINIDSKVGAVGFVPRYASIFYPVTLIKCDEETG 401

Query: 397 EPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNGYADKKASEKKILRNVYSHGDAAFN 456
            PIRN DG C  C   EPG+ IG++   +  + F GYADKKA+EKK++ NV+  GD  FN
Sbjct: 402 APIRNSDGFCQRCDPGEPGVCIGIVNPKKTVNDFAGYADKKATEKKLIENVFKKGDRYFN 461

Query: 457 TGDILIKDKFQYFYFKDRTGD 477
           +GDILI+D+F Y++FKDRTGD
Sbjct: 462 SGDILIQDEFGYYFFKDRTGD 482

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380021552|ref|XP_003694627.1| PREDICTED: long-chain fatty acid transport protein 4-like [Apis florea]

 Score =  477 bits (1227), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 221/410 (53%), Positives = 287/410 (70%), Gaps = 13/410 (3%)

Query: 73  QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHIL 132
           ++E++SNRI  +F  K L R D+V L ME +PEYV +WLGLSK G+V A +NTN RQ +L
Sbjct: 197 ELEEYSNRIGRYFAGKSLSREDSVGLIMESRPEYVGIWLGLSKAGLVGALLNTNLRQDVL 256

Query: 133 IHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEEL-- 190
           +HSIK A CKA+I+G+   +A+ E+++ IP ++LY        Q   LP T+ L+  +  
Sbjct: 257 VHSIKAANCKAVIFGSNFKDAIAEIRERIPNVALY--------QWSELPDTSCLEGAIDL 308

Query: 191 -PEVSA--KSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLT 247
            PE+S+    P + +    P DKL YIYTSGTTG+PKAAV+T++R M M+        L 
Sbjct: 309 NPEISSVDSGPLDTVALGTPRDKLIYIYTSGTTGMPKAAVITNLRYMLMSCGVNSMLNLR 368

Query: 248 SDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEM 307
             D +Y +LPLYHTAGGL+G+GQ LL G TVV+R +FSAS FW DC+ Y CTVAQYIGE+
Sbjct: 369 PTDRIYNSLPLYHTAGGLIGVGQALLRGITVVLRRRFSASKFWPDCVHYECTVAQYIGEI 428

Query: 308 CRYLLAVPEKPEDTQHSVKMMIGNGLRPQVWEPFQKRFGLDRICEFYGATEGNANLMNAD 367
           CRYLL  P  P DT H V++M GNGLRPQ+W+PF  RFG+ +I EFYGATEGN+NL+N D
Sbjct: 429 CRYLLTAPAAPCDTTHKVRLMFGNGLRPQIWKPFVDRFGVKQIGEFYGATEGNSNLVNID 488

Query: 368 GKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAE 427
             +GAVG++P      YPV L++ D ET EP+R  DGLCI CK  E GI +G I   R  
Sbjct: 489 NTIGAVGFVPLCGSSLYPVALLRVDEETGEPLRGSDGLCIRCKPGESGIFVGKINPKRVL 548

Query: 428 SHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGD 477
           + F+GY D+KASE+KILR+V+  GD  FN+GDIL+ D+F YFYFKDRTGD
Sbjct: 549 NDFSGYVDRKASEQKILRDVFRKGDRVFNSGDILLMDEFGYFYFKDRTGD 598

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328787757|ref|XP_392448.3| PREDICTED: long-chain fatty acid transport protein 4-like [Apis mellifera]

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 221/410 (53%), Positives = 286/410 (69%), Gaps = 13/410 (3%)

Query: 73  QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHIL 132
           ++E +SNRI  +F  K L R D+V L ME +PEYV +WLGLSK G+V A +NTN RQ +L
Sbjct: 199 ELEGYSNRIGRYFTGKSLSREDSVGLIMESRPEYVGIWLGLSKAGLVGALLNTNLRQDVL 258

Query: 133 IHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEEL-- 190
           +HSIK A CKA+I+G+   +A+ E+++ IP ++LY        Q   LP T+ L+  +  
Sbjct: 259 MHSIKAANCKAVIFGSNFKDAMVEIRERIPNVALY--------QWSELPDTSCLEGAIDL 310

Query: 191 -PEVSA--KSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLT 247
            PE+S+    P + +    P DKL YIYTSGTTG+PKAAV+T++R M M+        L 
Sbjct: 311 NPEISSVDSGPLDTVALGTPRDKLIYIYTSGTTGMPKAAVITNLRYMLMSCGVNSMLNLR 370

Query: 248 SDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEM 307
             D +Y +LPLYHTAGGL+G+GQ LL G TVV+R +FSAS FW DC+ Y CTVAQYIGE+
Sbjct: 371 PTDRIYNSLPLYHTAGGLIGVGQALLRGITVVLRRRFSASKFWPDCVHYECTVAQYIGEI 430

Query: 308 CRYLLAVPEKPEDTQHSVKMMIGNGLRPQVWEPFQKRFGLDRICEFYGATEGNANLMNAD 367
           CRYLL  P  P DT H V++M GNGLRPQ+W+PF  RFG+ +I EFYGATEGN+NL+N D
Sbjct: 431 CRYLLTAPAAPCDTTHKVRLMFGNGLRPQIWKPFVDRFGVKQIGEFYGATEGNSNLVNID 490

Query: 368 GKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAE 427
             +GAVG++P      YPV L++ D ET EP+R  DGLCI CK  E GI +G I   R  
Sbjct: 491 NTIGAVGFVPLCGSSLYPVALLRVDEETGEPLRGPDGLCIRCKPGESGIFVGKINPKRVL 550

Query: 428 SHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGD 477
           + F+GY D+KASE+KILR+V+  GD  FN+GDIL+ D+F YFYFKDRTGD
Sbjct: 551 NDFSGYVDRKASEQKILRDVFRKGDRVFNSGDILLMDEFGYFYFKDRTGD 600

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242022874|ref|XP_002431863.1| Long-chain fatty acid transport protein, putative [Pediculus humanus corporis] gi|212517195|gb|EEB19125.1| Long-chain fatty acid transport protein, putative [Pediculus humanus corporis]

 Score =  473 bits (1218), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 219/406 (53%), Positives = 289/406 (71%)

Query: 73  QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHIL 132
           QV ++SN I ++FKS+G ++GD +AL+ME   EY+C+WLGL+K+G+V+A INTN R    
Sbjct: 36  QVNEYSNGIGHYFKSQGYKKGDTIALYMENSIEYMCIWLGLAKLGIVSALINTNLRNQSF 95

Query: 133 IHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPE 192
           +HS+K A+C A+IY +ELSE + E+   +  I LY     ++ +   L     L + L E
Sbjct: 96  LHSLKAAKCNALIYSSELSEGVKEILGELKDIKLYILNKSKEGEETNLGEAIDLKKGLAE 155

Query: 193 VSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVV 252
           VS  +  +++   KP DKL +IYTSGTTGLPKAAV+ + R +F++I  +    L  DD++
Sbjct: 156 VSKANLIDEVNAGKPRDKLLFIYTSGTTGLPKAAVINNNRYLFISIGVKILLKLHDDDIL 215

Query: 253 YTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLL 312
           Y +LPLYHT+G ++G GQ +L G TVVIR KFSASNFW+DCIKYNCTVA YIGE+CRYLL
Sbjct: 216 YNSLPLYHTSGVIVGAGQSILSGITVVIRKKFSASNFWQDCIKYNCTVACYIGEICRYLL 275

Query: 313 AVPEKPEDTQHSVKMMIGNGLRPQVWEPFQKRFGLDRICEFYGATEGNANLMNADGKVGA 372
           AVPEK  D QH +++M GNGL+ Q+WE F +RF + +I EFYGATEGN+NL+N D KVG 
Sbjct: 276 AVPEKSHDKQHKIRLMFGNGLKAQIWEKFVERFQIKQIGEFYGATEGNSNLVNIDNKVGC 335

Query: 373 VGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNG 432
           VG++P +A P YPV L+K D +T EPIRN  G CI C+  EPGI +G I   +  S F G
Sbjct: 336 VGFVPRLAGPVYPVVLLKVDKDTEEPIRNSKGFCIRCQPGEPGICVGKINSKQTISTFLG 395

Query: 433 YADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDA 478
           YADK  SEKKIL+NV+  GD  FN+GDIL+ D + YF FKDRTGD 
Sbjct: 396 YADKVESEKKILKNVFKKGDNYFNSGDILVMDDYGYFSFKDRTGDT 441

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350409131|ref|XP_003488621.1| PREDICTED: long-chain fatty acid transport protein 4-like [Bombus impatiens]

 Score =  473 bits (1217), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 219/410 (53%), Positives = 288/410 (70%), Gaps = 13/410 (3%)

Query: 73  QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHIL 132
           ++E++SN++  +F  K L R D+V L +E +PEYV +WLGLSK G+V A +NTN RQ +L
Sbjct: 199 ELEEYSNQLGRYFHGKSLSREDSVGLILESRPEYVGIWLGLSKAGLVGALLNTNLRQDVL 258

Query: 133 IHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEEL-- 190
           +HSIK A CKA+I+G+   +A+ E+++ IP ++LY        Q   LP T  L+  +  
Sbjct: 259 VHSIKAANCKAVIFGSNFKDAINEIRERIPNVALY--------QWSELPDTPCLEGAIDL 310

Query: 191 -PEVSA--KSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLT 247
            PE+S    SP + +    P DKL YIYTSGTTG+PKAAV+T++R M M+        L 
Sbjct: 311 NPEISNVDSSPLDTVALGTPRDKLIYIYTSGTTGMPKAAVITNLRYMLMSCGVNSMLNLR 370

Query: 248 SDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEM 307
             D +Y +LPLYHTAGGL+G+GQ LL G TVV+R +FSAS FW DC+ Y CT+AQYIGE+
Sbjct: 371 PTDRIYNSLPLYHTAGGLIGVGQALLRGITVVLRRRFSASKFWSDCVHYECTIAQYIGEI 430

Query: 308 CRYLLAVPEKPEDTQHSVKMMIGNGLRPQVWEPFQKRFGLDRICEFYGATEGNANLMNAD 367
           CRYLL  P    DT H V++M GNGLRPQ+W+PF +RFG+ +I EFYGATEGN+NL+N D
Sbjct: 431 CRYLLTAPSASCDTTHKVRLMFGNGLRPQIWKPFVERFGVKQIGEFYGATEGNSNLVNID 490

Query: 368 GKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAE 427
            K+GAVG++P  A   YPV L++ D ET EP+R  DGLCI CK  E GI +G I   R  
Sbjct: 491 NKIGAVGFVPLCAGSLYPVALLRVDEETGEPLREPDGLCIRCKPGESGIFVGKINPKRVL 550

Query: 428 SHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGD 477
           + F+GY D+KASE+KILR+V+  GD  FN+GDIL+ D+F YFYFKDRTGD
Sbjct: 551 NDFSGYVDRKASEQKILRDVFRKGDRVFNSGDILLMDEFGYFYFKDRTGD 600

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340712760|ref|XP_003394923.1| PREDICTED: long-chain fatty acid transport protein 4-like [Bombus terrestris]

 Score =  472 bits (1214), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 219/410 (53%), Positives = 288/410 (70%), Gaps = 13/410 (3%)

Query: 73  QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHIL 132
           ++E++SN++  +F  K L R D+V L +E +PEYV +WLGLSK G+V A +NTN RQ +L
Sbjct: 51  ELEEYSNQLGRYFHGKSLSREDSVGLILESRPEYVGIWLGLSKAGLVGALLNTNLRQDVL 110

Query: 133 IHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEEL-- 190
           +HSIK A CKA+I+G+   +A+ E+++ IP ++LY        Q   LP T  L+  +  
Sbjct: 111 VHSIKAANCKAVIFGSNFKDAINEIRERIPNVALY--------QWSELPDTPCLEGAIDL 162

Query: 191 -PEVSA--KSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLT 247
            PE+S    SP + +    P DKL YIYTSGTTG+PKAAV+T++R M M+        L 
Sbjct: 163 NPEISNVDSSPLDTVALGTPRDKLIYIYTSGTTGMPKAAVITNLRYMLMSCGVNSMLNLR 222

Query: 248 SDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEM 307
             D +Y +LPLYHTAGGL+G+GQ LL G TVV+R +FSAS FW DC+ Y CT+AQYIGE+
Sbjct: 223 PTDRIYNSLPLYHTAGGLIGVGQALLRGITVVLRRRFSASKFWSDCVHYECTIAQYIGEI 282

Query: 308 CRYLLAVPEKPEDTQHSVKMMIGNGLRPQVWEPFQKRFGLDRICEFYGATEGNANLMNAD 367
           CRYLL  P    DT H V++M GNGLRPQ+W+PF +RFG+ +I EFYGATEGN+NL+N D
Sbjct: 283 CRYLLTAPSASCDTTHKVRLMFGNGLRPQIWKPFVERFGVKQIGEFYGATEGNSNLVNID 342

Query: 368 GKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAE 427
            K+GAVG++P  A   YPV L++ D ET EP+R  DGLCI CK  E GI +G I   R  
Sbjct: 343 NKIGAVGFVPLCAGSLYPVALLRVDEETGEPLREPDGLCIRCKPGESGIFVGKINPKRVL 402

Query: 428 SHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGD 477
           + F+GY D+KASE+KILR+V+  GD  FN+GDIL+ D+F YFYFKDRTGD
Sbjct: 403 NDFSGYVDRKASEQKILRDVFRKGDRVFNSGDILLMDEFGYFYFKDRTGD 452

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345488877|ref|XP_001603294.2| PREDICTED: long-chain fatty acid transport protein 4-like [Nasonia vitripennis]

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 218/405 (53%), Positives = 283/405 (69%), Gaps = 2/405 (0%)

Query: 73  QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHIL 132
           Q+ED SNR+  +F++K + RGD++AL ME + EYV  WLGLSK G V A +NTN R  +L
Sbjct: 197 QLEDFSNRVGRYFRAKPMSRGDSIALVMESRVEYVGTWLGLSKAGYVTALVNTNLRGDVL 256

Query: 133 IHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPE 192
           +HSI VA CKA+I+  E  EA++E+K+ IP ++LY           +L   + L   L E
Sbjct: 257 VHSINVAGCKAVIFSGEFKEAISEIKEKIPDLALYQWSEH--SDTILLEGASDLSTGLAE 314

Query: 193 VSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVV 252
             ++    D+    P DKL YIYTSGTTGLPKAAV+ ++R M M+       GL S D +
Sbjct: 315 ADSEPLFVDLSLGCPRDKLIYIYTSGTTGLPKAAVINNLRYMLMSCGVYSMLGLKSTDRI 374

Query: 253 YTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLL 312
           Y +LPLYHTAGG++G GQ LL G TVV+R +FSAS FW DC+ Y CTVAQYIGE+CRYLL
Sbjct: 375 YDSLPLYHTAGGIVGAGQALLRGITVVLRRRFSASKFWPDCVHYECTVAQYIGEICRYLL 434

Query: 313 AVPEKPEDTQHSVKMMIGNGLRPQVWEPFQKRFGLDRICEFYGATEGNANLMNADGKVGA 372
           AVP    DT H V++M GNGLRPQ+W+PF +RF + +I EFYGATEGN+NL+N D ++GA
Sbjct: 435 AVPASSADTSHKVRLMYGNGLRPQIWKPFVERFRVKQIGEFYGATEGNSNLVNIDNRIGA 494

Query: 373 VGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNG 432
           VG++P  A   YPV L+K D  T EPIR  DGLCI C+  EPG+ +G I   +A + F+G
Sbjct: 495 VGFVPRYAGSLYPVALLKVDESTGEPIRGPDGLCILCQPGEPGVFVGKINPKKAVNDFSG 554

Query: 433 YADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGD 477
           Y DKKASEKKI+ +V+  GD  FN+GD+L+ D++ YFYFKDRTGD
Sbjct: 555 YVDKKASEKKIIHDVFKKGDRVFNSGDLLVMDEYGYFYFKDRTGD 599

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322802840|gb|EFZ23036.1| hypothetical protein SINV_09456 [Solenopsis invicta]

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 213/405 (52%), Positives = 281/405 (69%), Gaps = 2/405 (0%)

Query: 73  QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHIL 132
           Q+E +SNR+  +F+++     D++A+FME +PEY+  WLGLSK G V A INTN R+ +L
Sbjct: 50  QLEHYSNRMGRYFRTRPFSHFDSIAVFMENRPEYIATWLGLSKAGFVGALINTNLRRDVL 109

Query: 133 IHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPE 192
           +HSI  A CK II+G+EL +A+ ++KD IP I LY           +L     +++++  
Sbjct: 110 LHSINAAGCKGIIFGSELKDAIRDIKDKIPDIELYQWS--ELADTPILEGAVDINKKIST 167

Query: 193 VSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVV 252
           + +      +  + P DKL YIYTSGTTG+PKAAV+ ++R M M         L SDD +
Sbjct: 168 IDSGPLFVQLDHSSPRDKLIYIYTSGTTGMPKAAVINNLRFMLMTCGVNSMLNLHSDDRI 227

Query: 253 YTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLL 312
           Y  LPLYHTAGG+LG GQ L+GG TVV+R KFSASN+W DC+ Y CT+AQYIGE+CR+LL
Sbjct: 228 YNPLPLYHTAGGILGAGQALMGGVTVVLRRKFSASNYWSDCVHYECTIAQYIGEICRFLL 287

Query: 313 AVPEKPEDTQHSVKMMIGNGLRPQVWEPFQKRFGLDRICEFYGATEGNANLMNADGKVGA 372
            VP    DT+H V++M GNGLRPQ+WE F KRFG+ +I EFYGATEGN+NL+N D K+GA
Sbjct: 288 TVPPSEYDTKHKVRLMFGNGLRPQIWESFVKRFGVKQIGEFYGATEGNSNLVNIDNKIGA 347

Query: 373 VGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNG 432
           VG+IP      YPV L+K D +T E +R  DG CIPCK  EPGI +G I   +  + F+G
Sbjct: 348 VGFIPRYLSALYPVALLKIDEDTGELLRGSDGFCIPCKPGEPGIFVGKINPKKVINDFSG 407

Query: 433 YADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGD 477
           YADKKASE+KI+ +V+  GD  FN+GDIL+ D+  YFYFKDRTGD
Sbjct: 408 YADKKASEQKIIHDVFVKGDRVFNSGDILVMDELGYFYFKDRTGD 452

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	479
FB|FBgn0021953	705	Fatp "Fatty acid (long chain)	0.845	0.574	0.484	8.6e-104
FB|FBgn0034999	687	CG3394 [Drosophila melanogaste	0.826	0.576	0.481	3.3e-102
ZFIN|ZDB-GENE-050417-248	643	slc27a4 "solute carrier family	0.835	0.622	0.466	9.7e-99
UNIPROTKB|E1BT18	654	SLC27A4 "Uncharacterized prote	0.889	0.651	0.456	1.3e-98
MGI|MGI:1347098	646	Slc27a1 "solute carrier family	0.841	0.623	0.458	1.5e-97
ZFIN|ZDB-GENE-061013-672	648	slc27a1b "solute carrier famil	0.835	0.617	0.465	5.2e-97
RGD|620927	646	Slc27a1 "solute carrier family	0.841	0.623	0.458	1.8e-96
UNIPROTKB|Q6PCB7	646	SLC27A1 "Long-chain fatty acid	0.841	0.623	0.463	3.7e-96
UNIPROTKB|F6Q413	498	SLC27A1 "Uncharacterized prote	0.841	0.809	0.460	3.7e-96
UNIPROTKB|Q6P1M0	643	SLC27A4 "Long-chain fatty acid	0.881	0.656	0.448	2e-95

FB|FBgn0021953 Fatp "Fatty acid (long chain) transport protein" [Drosophila melanogaster (taxid:7227)]

 Score = 1028 (366.9 bits), Expect = 8.6e-104, P = 8.6e-104
 Identities = 199/411 (48%), Positives = 266/411 (64%)

Query:    71 TF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQ 129
             TF QV +H+N++AN  +++G ++GD VAL +E + EYV  WLGLSKIGV+   INTN R 
Sbjct:   162 TFRQVNEHANKVANVLQAQGYKKGDVVALLLENRAEYVATWLGLSKIGVITPLINTNLRG 221

Query:   130 HILIHSIKVAECKAIIYGAELSEALTEVKDSIPG-ISLYAAGTRRKPQA--KVLPSTTLL 186
               L+HSI VA C A+IYG +  EA+T+V   +P  ++L+            K +P    L
Sbjct:   222 PSLLHSITVAHCSALIYGEDFLEAVTDVAKDLPANLTLFQFNNENNNSETEKNIPQAKNL 281

Query:   187 DEELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGL 246
             +  L   S + P +  + N   DKL YIYTSGTTGLPKAAV++H R +F+A    Y  G 
Sbjct:   282 NALLTTASYEKPNKT-QVNH-HDKLVYIYTSGTTGLPKAAVISHSRYLFIAAGIHYTMGF 339

Query:   247 TSDDVVYTTLPLYHTAXXXXXXXXXXXXXSTVVIRSKFSASNFWKDCIKYNCTVAQYIGE 306
               +D+ YT LPLYHTA             STV IR KFSASN++ DC KYN T+ QYIGE
Sbjct:   340 QEEDIFYTPLPLYHTAGGIMCMGQSVLFGSTVSIRKKFSASNYFADCAKYNATIGQYIGE 399

Query:   307 MCRYLLAVPEKPEDTQHSVKMMIGNGLRPQVWEPFQKRFGLDRICEFYGATEGNANLMNA 366
             M RY+LA      D +H V+++ GNGLRPQ+W  F +RF + ++ EFYGATEGNAN+MN 
Sbjct:   400 MARYILATKPSEYDQKHRVRLVFGNGLRPQIWPQFVQRFNIAKVGEFYGATEGNANIMNH 459

Query:   367 DGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRA 426
             D  VGA+G++  I    YP+ +I+ DP+T EPIR+++GLC  C   EPG+ IG I +   
Sbjct:   460 DNTVGAIGFVSRILPKIYPISIIRADPDTGEPIRDRNGLCQLCAPNEPGVFIGKIVKGNP 519

Query:   427 ESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGD 477
                F GY D+KAS KKI+++V+ HGD AF +GD+L+ D+  Y YFKDRTGD
Sbjct:   520 SREFLGYVDEKASAKKIVKDVFKHGDMAFISGDLLVADEKGYLYFKDRTGD 570

GO:0005324 "long-chain fatty acid transporter activity" evidence=ISS

GO:0015909 "long-chain fatty acid transport" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

GO:0008152 "metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0070328 "triglyceride homeostasis" evidence=IMP

FB|FBgn0034999 CG3394 [Drosophila melanogaster (taxid:7227)]

 Score = 1013 (361.7 bits), Expect = 3.3e-102, P = 3.3e-102
 Identities = 199/413 (48%), Positives = 270/413 (65%)

Query:    76 DHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHS 135
             + S +IA +F  +GL+RGD VAL ME + EY C+WLGLS++GV+ A IN+N R   L+HS
Sbjct:   146 EFSQKIAGYFSDRGLERGDCVALLMETRLEYPCIWLGLSQLGVITALINSNLRGESLLHS 205

Query:   136 IKVAECKAIIYGAELSEALTEV--KDSIPGISLY---------AAGTRRKPQAKVLPSTT 184
             IKVA  KA+I G+EL + L  +  K+ +  + +Y          AG    P A  L +  
Sbjct:   206 IKVANAKALIVGSELLDVLVSLREKEQLDEVPIYQYTDDEVRGVAGHDLLPGAVDLVTAL 265

Query:   185 LLDEELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQT 244
                ++L   SA  P E         KL Y+YTSGTTGLPKAAV+T++R +FM+    Y  
Sbjct:   266 KTQKKLELPSAVCPGE------ARSKLLYVYTSGTTGLPKAAVITNLRFLFMSAGSYYML 319

Query:   245 GLTSDDVVYTTLPLYHTAXXXXXXXXXXXXXSTVVIRSKFSASNFWKDCIKYNCTVAQYI 304
              ++SDDVVY  LPLYHTA             STVV+R KFSA NFW DC ++NCTVAQYI
Sbjct:   320 KMSSDDVVYDPLPLYHTAGGIVGVGNAILNGSTVVLRKKFSARNFWLDCDRHNCTVAQYI 379

Query:   305 GEMCRYLLAVPEKPEDTQHSVKMMIGNGLRPQVWEPFQKRFGLDRICEFYGATEGNANLM 364
             GE+CRYLLA    P+  +H++++M GNGLRPQ+W  F +RFG+  I E YGATEGN+NL+
Sbjct:   380 GELCRYLLATSYSPDQQKHNLRLMYGNGLRPQIWSQFVRRFGIPHIGEIYGATEGNSNLI 439

Query:   365 NADGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKES 424
             N   +VGA+G++P      YPV +++CD  T E +++  G CI C+  + G+L+G +   
Sbjct:   440 NITNRVGAIGFVPVYGSSLYPVQVLRCDEYTGELLKDSKGHCIRCQPGQAGLLVGKVDAR 499

Query:   425 RAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGD 477
             RA S F+GYADK ASE+K+LRNV++ GD  FN+GD++++D   YFYFKDRTGD
Sbjct:   500 RAVSAFHGYADKGASEQKLLRNVFTSGDVFFNSGDMVVRDILGYFYFKDRTGD 552

GO:0005324 "long-chain fatty acid transporter activity" evidence=ISS

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

ZFIN|ZDB-GENE-050417-248 slc27a4 "solute carrier family 27 (fatty acid transporter), member 4" [Danio rerio (taxid:7955)]

 Score = 957 (341.9 bits), Expect = 9.7e-99, Sum P(2) = 9.7e-99
 Identities = 190/407 (46%), Positives = 262/407 (64%)

Query:    73 QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHIL 132
             +++++SNR+ANF   +G + GD VALFME + +YV +WLG++KIGV AA IN N R   L
Sbjct:   106 ELDEYSNRVANFLLQQGFREGDVVALFMENRHQYVGLWLGMAKIGVEAALINFNLRLEAL 165

Query:   133 IHSIKVAECKAIIYGAELSEALTEVKDSI-PGISLYAAGTRRKPQAKVLPSTTLLDEELP 191
             +H + ++  KA+++G+EL+EA+ EV  S+   + L+ +G    P+ +V   T  LD  L 
Sbjct:   166 VHCVNISSAKAVVFGSELTEAMCEVHSSMGKTVKLFVSG-EWDPK-RVPVGTEHLDPLLE 223

Query:   192 EVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDV 251
               S   P +  +    +D+L YIYTSGTTG+PKAA++ H R   MA    Y   +  +DV
Sbjct:   224 TTSTIQPKQPDRSF--TDRLFYIYTSGTTGMPKAAIVVHSRYYRMAALVYYGFRMKPEDV 281

Query:   252 VYTTLPLYHTAXXXXXXXXXXXXXSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYL 311
             +Y  LPLYH+A              TVVIR KFSAS FW DCIKYNCT+ QYIGE+CRYL
Sbjct:   282 LYDCLPLYHSAGNIVGIGQGLIHGMTVVIRKKFSASKFWDDCIKYNCTIVQYIGEICRYL 341

Query:   312 LAVPEKPEDTQHSVKMMIGNGLRPQVWEPFQKRFGLDRICEFYGATEGNANLMNADGKVG 371
             L  P K  + +H V+M +GNGLR  +WE F  RF + +I EFYGATE N +L N D K G
Sbjct:   342 LNQPRKDTERKHKVRMALGNGLRQSIWEEFTNRFNVPQIAEFYGATECNCSLGNFDNKTG 401

Query:   372 AVGYIPYIAIPF-YPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHF 430
             A G+   I +P+ YP+ L+K D ET E IR  DG+CIPC   EPG L+G I ++     F
Sbjct:   402 ACGFNSRI-LPYVYPIRLVKVDEETMELIRGPDGVCIPCGPGEPGQLVGRIIQNDPLRRF 460

Query:   431 NGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGD 477
             +GY ++ A+ KKI ++V+  GD+A+ +GD+L+ D F Y YF+DRTGD
Sbjct:   461 DGYVNQTATNKKIAQDVFKKGDSAYLSGDVLVMDDFGYMYFRDRTGD 507

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|E1BT18 SLC27A4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 979 (349.7 bits), Expect = 1.3e-98, P = 1.3e-98
 Identities = 200/438 (45%), Positives = 276/438 (63%)

Query:    47 TYARPLFVRTIREVPMTGAYKY-----TVTF-QVEDHSNRIANFFKSKGLQRGDAVALFM 100
             T A+ +F RT  + P   A  +     + TF Q++++SN++ANFF  +G + GD VALFM
Sbjct:    86 TIAK-IFQRTASKCPEKTALIFQGTGESWTFRQLDEYSNQVANFFHGQGFRSGDVVALFM 144

Query:   101 EGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDS 160
             E + +YV +WLGL+KIGV  A +N+N R   L+H I ++  KA+++G E+ EA+ EV+ S
Sbjct:   145 ESRNQYVGLWLGLAKIGVETALVNSNLRMEALLHCITISNSKAVVFGVEMMEAMKEVQSS 204

Query:   161 IP-GISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTEDIKKNKPSDKLAYIYTSGT 219
             +   + L+ +G    P++  L     LD  L     + P  D  +    DKL YIYTSGT
Sbjct:   205 MEKSVHLFWSG-EGSPES-ALSGAKHLDPLLQTALRQQP--DPPEKGFLDKLFYIYTSGT 260

Query:   220 TGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAXXXXXXXXXXXXXSTVV 279
             TG+PKAA++ + R   MA    Y   +  DDV+Y  LPLYH A              TVV
Sbjct:   261 TGMPKAAIVVNCRYFRMASLVFYGFRMRPDDVMYDCLPLYHAAGNIVGIGQCLLQGMTVV 320

Query:   280 IRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMIGNGLRPQVWE 339
             IR KFSAS+FW+DC+KYNCT+ QYIGE+CRYLL  P +  + QH V+M +GNGLR  +W 
Sbjct:   321 IRKKFSASHFWEDCVKYNCTIVQYIGEICRYLLNQPYQEVERQHRVRMALGNGLRASIWR 380

Query:   340 PFQKRFGLDRICEFYGATEGNANLMNADGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPI 399
              F  RFG+ ++ EFYGATE N +L N D  VG+ G+   I    YP+GL+K D +T E I
Sbjct:   381 EFMARFGIAQVAEFYGATECNCSLGNFDNNVGSCGFNSRILPGVYPIGLVKVDEDTMELI 440

Query:   400 RNKDGLCIPCKAEEPGILIGMIKESRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGD 459
             R  DG+CI CK  EPG L+G I +S    HF+GY ++ A+ KKI R+V++ GDAA+ TGD
Sbjct:   441 RGPDGVCIRCKPGEPGQLVGRIVKSNPLQHFDGYLNQSATSKKIARDVFAKGDAAYLTGD 500

Query:   460 ILIKDKFQYFYFKDRTGD 477
             +L+ DK+ Y YF+DRTGD
Sbjct:   501 VLVMDKYGYMYFRDRTGD 518

GO:0001579 "medium-chain fatty acid transport" evidence=IEA

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0005902 "microvillus" evidence=IEA

GO:0031526 "brush border membrane" evidence=IEA

GO:0031957 "very long-chain fatty acid-CoA ligase activity" evidence=IEA

GO:0042760 "very long-chain fatty acid catabolic process" evidence=IEA

GO:0043588 "skin development" evidence=IEA

GO:0044539 "long-chain fatty acid import" evidence=IEA

MGI|MGI:1347098 Slc27a1 "solute carrier family 27 (fatty acid transporter), member 1" [Mus musculus (taxid:10090)]

 Score = 969 (346.2 bits), Expect = 1.5e-97, P = 1.5e-97
 Identities = 188/410 (45%), Positives = 264/410 (64%)

Query:    71 TF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQ 129
             TF Q++ +SN +AN F+  G   GD VA+F+EG+PE+V +WLGL+K GVVAA +N N R+
Sbjct:   105 TFAQLDTYSNAVANLFRQLGFAPGDVVAVFLEGRPEFVGLWLGLAKAGVVAALLNVNLRR 164

Query:   130 HILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISL--YAAGTRRKPQAKVLPSTTLLD 187
               L   +  +  KA+IYG E++ A+ EV + + G SL  + +G    P++ +LP T LLD
Sbjct:   165 EPLAFCLGTSAAKALIYGGEMAAAVAEVSEQL-GKSLLKFCSGDLG-PES-ILPDTQLLD 221

Query:   188 EELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLT 247
               L E    +P          D+L YIYTSGTTGLPKAA++ H R   +A  G +   + 
Sbjct:   222 PMLAEAPT-TPLAQAPGKGMDDRLFYIYTSGTTGLPKAAIVVHSRYYRIAAFGHHSYSMR 280

Query:   248 SDDVVYTTLPLYHTAXXXXXXXXXXXXXSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEM 307
             + DV+Y  LPLYH+A              TVV+R KFSAS FW DC+KYNCTV QYIGE+
Sbjct:   281 AADVLYDCLPLYHSAGNIMGVGQCVIYGLTVVLRKKFSASRFWDDCVKYNCTVVQYIGEI 340

Query:   308 CRYLLAVPEKPEDTQHSVKMMIGNGLRPQVWEPFQKRFGLDRICEFYGATEGNANLMNAD 367
             CRYLL  P +  + +H V++ +GNGLRP +WE F +RFG+ +I EFYGATE N ++ N D
Sbjct:   341 CRYLLRQPVRDVEQRHRVRLAVGNGLRPAIWEEFTQRFGVPQIGEFYGATECNCSIANMD 400

Query:   368 GKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAE 427
             GKVG+ G+   I    YP+ L+K + +T EP+R+ +GLCIPC+  EPG+L+G I +    
Sbjct:   401 GKVGSCGFNSRILTHVYPIRLVKVNEDTMEPLRDSEGLCIPCQPGEPGLLVGQINQQDPL 460

Query:   428 SHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGD 477
               F+GY    A+ KKI  +V+  GD+A+ +GD+L+ D+  Y YF+DR+GD
Sbjct:   461 RRFDGYVSDSATNKKIAHSVFRKGDSAYLSGDVLVMDELGYMYFRDRSGD 510

GO:0000166 "nucleotide binding" evidence=IEA

GO:0001579 "medium-chain fatty acid transport" evidence=IGI

GO:0001676 "long-chain fatty acid metabolic process" evidence=TAS

GO:0003824 "catalytic activity" evidence=IEA

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=TAS

GO:0005737 "cytoplasm" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISO

GO:0005743 "mitochondrial inner membrane" evidence=ISO

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005886 "plasma membrane" evidence=ISO;IDA;TAS

GO:0005901 "caveola" evidence=ISO

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0006646 "phosphatidylethanolamine biosynthetic process" evidence=ISO

GO:0006654 "phosphatidic acid biosynthetic process" evidence=ISO

GO:0006655 "phosphatidylglycerol biosynthetic process" evidence=ISO

GO:0006656 "phosphatidylcholine biosynthetic process" evidence=ISO

GO:0006659 "phosphatidylserine biosynthetic process" evidence=ISO

GO:0006661 "phosphatidylinositol biosynthetic process" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0006869 "lipid transport" evidence=IEA

GO:0008152 "metabolic process" evidence=IDA

GO:0009409 "response to cold" evidence=IMP

GO:0015245 "fatty acid transporter activity" evidence=IGI;IDA

GO:0015908 "fatty acid transport" evidence=IMP;IDA

GO:0015909 "long-chain fatty acid transport" evidence=IMP

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=TAS

GO:0031652 "positive regulation of heat generation" evidence=IMP

GO:0031957 "very long-chain fatty acid-CoA ligase activity" evidence=IDA

GO:0032049 "cardiolipin biosynthetic process" evidence=ISO

GO:0032868 "response to insulin stimulus" evidence=IMP

GO:0033211 "adiponectin-mediated signaling pathway" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

GO:0071072 "negative regulation of phospholipid biosynthetic process" evidence=ISO

GO:0071902 "positive regulation of protein serine/threonine kinase activity" evidence=IMP

ZFIN|ZDB-GENE-061013-672 slc27a1b "solute carrier family 27 (fatty acid transporter), member 1b" [Danio rerio (taxid:7955)]

 Score = 964 (344.4 bits), Expect = 5.2e-97, P = 5.2e-97
 Identities = 190/408 (46%), Positives = 267/408 (65%)

Query:    73 QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHIL 132
             +++  SN +A +  ++G + GD VA+FME +P+ V +WLG++K+GV  A IN N R+  L
Sbjct:   110 ELDRRSNAVAQWVLAQGWRSGDVVAIFMESRPQMVALWLGMAKVGVEPALINFNLRRDSL 169

Query:   133 IHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPE 192
             IH + V+    +++GAEL + + EV++S+  +SL++ G+   P A++L S +  D  L  
Sbjct:   170 IHCMGVSGACGMVFGAELLDVVLEVRESLRSLSLFSCGSA--P-AEMLDSLSAAD--LDA 224

Query:   193 VSAKSPTED--IKKNKP-SDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSD 249
             + +KSP     +  NK  +D+L YIYTSGTTGLPKAA++ H R   +A    Y  GL  D
Sbjct:   225 LLSKSPETPPAVAHNKGFNDRLFYIYTSGTTGLPKAAIVVHSRYYRIAAFSYYSFGLQPD 284

Query:   250 DVVYTTLPLYHTAXXXXXXXXXXXXXSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCR 309
             DVVY  LPLYH+A              TVVIR KFSAS FW DC+KYNCTV QYIGE+CR
Sbjct:   285 DVVYCCLPLYHSAGNIIGVGQCLLHGLTVVIRRKFSASRFWDDCVKYNCTVVQYIGEICR 344

Query:   310 YLLAVPEKPEDTQHSVKMMIGNGLRPQVWEPFQKRFGLDRICEFYGATEGNANLMNADGK 369
             YLL+ P +P ++ H V++ +GNGLRP VWE F KRF + RI EFYGATE N +L N D K
Sbjct:   345 YLLSQPVRPSESLHRVRVAMGNGLRPNVWESFMKRFSVKRIGEFYGATECNCSLANMDNK 404

Query:   370 VGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESH 429
             VGA G+   +    YP+ L++ D +T E IR+  GLC+PCK  EPGI++G I        
Sbjct:   405 VGACGFNSVVLPSVYPIRLLRADEDTMELIRDSRGLCVPCKPGEPGIIVGRINPQDPLRR 464

Query:   430 FNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGD 477
             F+GYA+++A+ KKI  NV+  GD+A+ +GD+++ D+  Y YF+DR GD
Sbjct:   465 FDGYANEEATSKKISHNVFRKGDSAYVSGDLMVMDELGYVYFRDRGGD 512

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

RGD|620927 Slc27a1 "solute carrier family 27 (fatty acid transporter), member 1" [Rattus norvegicus (taxid:10116)]

 Score = 959 (342.6 bits), Expect = 1.8e-96, P = 1.8e-96
 Identities = 188/410 (45%), Positives = 262/410 (63%)

Query:    71 TF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQ 129
             TF Q++ +SN +AN F   G   GD VA+F+EG+PE+V +WLGL+K GVVAA +N N R+
Sbjct:   105 TFAQLDTYSNAVANLFLQLGFAPGDVVAVFLEGRPEFVGLWLGLAKAGVVAALLNVNLRR 164

Query:   130 HILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISL--YAAGTRRKPQAKVLPSTTLLD 187
               L   +  +  KA+IYG E++ A+ EV + + G SL  + +G    P++ VLP T LLD
Sbjct:   165 EPLAFCLGTSAAKALIYGGEMAAAVAEVSEQL-GKSLLKFCSGDLG-PES-VLPDTQLLD 221

Query:   188 EELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLT 247
               L E    +P          D+L YIYTSGTTGLPKAA++ H R   +A  G +   + 
Sbjct:   222 PMLAEAPT-TPLAQAPGKGMDDRLFYIYTSGTTGLPKAAIVVHSRYYRIAAFGHHSYSMR 280

Query:   248 SDDVVYTTLPLYHTAXXXXXXXXXXXXXSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEM 307
             ++DV+Y  LPLYH+A              TVV+R KFSAS FW DC+KYNCTV QYIGE+
Sbjct:   281 ANDVLYDCLPLYHSAGNIMGVGQCIIYGLTVVLRKKFSASRFWDDCVKYNCTVVQYIGEI 340

Query:   308 CRYLLAVPEKPEDTQHSVKMMIGNGLRPQVWEPFQKRFGLDRICEFYGATEGNANLMNAD 367
             CRYLL  P +  + +H V++ +GNGLRP +WE F + FG+ +I EFYGATE N ++ N D
Sbjct:   341 CRYLLRQPVRDVERRHRVRLAVGNGLRPAIWEEFTQGFGVRQIGEFYGATECNCSIANMD 400

Query:   368 GKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAE 427
             GKVG+ G+   I    YP+ L+K + +T EP+R+  GLCIPC+  EPG+L+G I +    
Sbjct:   401 GKVGSCGFNSRILTHVYPIRLVKVNEDTMEPLRDSQGLCIPCQPGEPGLLVGQINQQDPL 460

Query:   428 SHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGD 477
               F+GY    A+ KKI  +V+  GD+A+ +GD+L+ D+  Y YF+DR+GD
Sbjct:   461 RRFDGYVSDSATNKKIAHSVFRKGDSAYLSGDVLVMDELGYMYFRDRSGD 510

GO:0000166 "nucleotide binding" evidence=IEA

GO:0001579 "medium-chain fatty acid transport" evidence=IEA;ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005739 "mitochondrion" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISO

GO:0005886 "plasma membrane" evidence=ISO;IDA

GO:0005901 "caveola" evidence=IDA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0006646 "phosphatidylethanolamine biosynthetic process" evidence=IEA;ISO

GO:0006654 "phosphatidic acid biosynthetic process" evidence=IEA;ISO

GO:0006655 "phosphatidylglycerol biosynthetic process" evidence=ISO

GO:0006656 "phosphatidylcholine biosynthetic process" evidence=IEA;ISO

GO:0006659 "phosphatidylserine biosynthetic process" evidence=IEA;ISO

GO:0006661 "phosphatidylinositol biosynthetic process" evidence=IEA;ISO

GO:0008150 "biological_process" evidence=ND

GO:0008152 "metabolic process" evidence=ISO

GO:0009409 "response to cold" evidence=IEA;ISO

GO:0012505 "endomembrane system" evidence=IEA

GO:0015245 "fatty acid transporter activity" evidence=IEA;ISO;NAS

GO:0015908 "fatty acid transport" evidence=ISO;NAS

GO:0015909 "long-chain fatty acid transport" evidence=IEA;ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0031652 "positive regulation of heat generation" evidence=IEA;ISO

GO:0031957 "very long-chain fatty acid-CoA ligase activity" evidence=IEA;ISO

GO:0032049 "cardiolipin biosynthetic process" evidence=IEA;ISO

GO:0032868 "response to insulin stimulus" evidence=IEA;ISO

GO:0033211 "adiponectin-mediated signaling pathway" evidence=IEA;ISO

GO:0042803 "protein homodimerization activity" evidence=IEA;ISO

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

GO:0071072 "negative regulation of phospholipid biosynthetic process" evidence=IEA;ISO

GO:0071902 "positive regulation of protein serine/threonine kinase activity" evidence=IEA;ISO

GO:0005743 "mitochondrial inner membrane" evidence=IDA

UNIPROTKB|Q6PCB7 SLC27A1 "Long-chain fatty acid transport protein 1" [Homo sapiens (taxid:9606)]

 Score = 956 (341.6 bits), Expect = 3.7e-96, P = 3.7e-96
 Identities = 190/410 (46%), Positives = 263/410 (64%)

Query:    71 TF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQ 129
             TF Q++ +SN +AN F+  G   GD VA+F+EG+PE+V +WLGL+K G+ AA +N N R+
Sbjct:   105 TFAQLDAYSNAVANLFRQLGFAPGDVVAIFLEGRPEFVGLWLGLAKAGMEAALLNVNLRR 164

Query:   130 HILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISL--YAAGTRRKPQAKVLPSTTLLD 187
               L   +  +  KA+I+G E+  A+ EV   + G SL  + +G    P+  +LP T LLD
Sbjct:   165 EPLAFCLGTSGAKALIFGGEMVAAVAEVSGHL-GKSLIKFCSGDLG-PEG-ILPDTHLLD 221

Query:   188 EELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLT 247
               L E S  +P   I      D+L YIYTSGTTGLPKAA++ H R   MA  G +   + 
Sbjct:   222 PLLKEAST-APLAQIPSKGMDDRLFYIYTSGTTGLPKAAIVVHSRYYRMAAFGHHAYRMQ 280

Query:   248 SDDVVYTTLPLYHTAXXXXXXXXXXXXXSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEM 307
             + DV+Y  LPLYH+A              TVV+R KFSAS FW DCIKYNCTV QYIGE+
Sbjct:   281 AADVLYDCLPLYHSAGNIIGVGQCLIYGLTVVLRKKFSASRFWDDCIKYNCTVVQYIGEI 340

Query:   308 CRYLLAVPEKPEDTQHSVKMMIGNGLRPQVWEPFQKRFGLDRICEFYGATEGNANLMNAD 367
             CRYLL  P +  + +H V++ +GNGLRP +WE F +RFG+ +I EFYGATE N ++ N D
Sbjct:   341 CRYLLKQPVREAERRHRVRLAVGNGLRPAIWEEFTERFGVRQIGEFYGATECNCSIANMD 400

Query:   368 GKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAE 427
             GKVG+ G+   I    YP+ L+K + +T E +R+  GLCIPC+A EPG+L+G I +    
Sbjct:   401 GKVGSCGFNSRILPHVYPIRLVKVNEDTMELLRDAQGLCIPCQAGEPGLLVGQINQQDPL 460

Query:   428 SHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGD 477
               F+GY  + A+ KKI  +V+S GD+A+ +GD+L+ D+  Y YF+DR+GD
Sbjct:   461 RRFDGYVSESATSKKIAHSVFSKGDSAYLSGDVLVMDELGYMYFRDRSGD 510

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0001579 "medium-chain fatty acid transport" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0009409 "response to cold" evidence=IEA

GO:0015245 "fatty acid transporter activity" evidence=IEA

GO:0031652 "positive regulation of heat generation" evidence=IEA

GO:0031957 "very long-chain fatty acid-CoA ligase activity" evidence=IEA

GO:0032868 "response to insulin stimulus" evidence=IEA

GO:0033211 "adiponectin-mediated signaling pathway" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0071902 "positive regulation of protein serine/threonine kinase activity" evidence=IEA

GO:0012505 "endomembrane system" evidence=IEA

GO:0071072 "negative regulation of phospholipid biosynthetic process" evidence=IMP

GO:0006656 "phosphatidylcholine biosynthetic process" evidence=IMP

GO:0006661 "phosphatidylinositol biosynthetic process" evidence=IMP

GO:0006655 "phosphatidylglycerol biosynthetic process" evidence=IMP

GO:0006659 "phosphatidylserine biosynthetic process" evidence=IMP

GO:0006646 "phosphatidylethanolamine biosynthetic process" evidence=IMP

GO:0032049 "cardiolipin biosynthetic process" evidence=IMP

GO:0006654 "phosphatidic acid biosynthetic process" evidence=IMP

GO:0005886 "plasma membrane" evidence=TAS

GO:0015909 "long-chain fatty acid transport" evidence=TAS

GO:0044255 "cellular lipid metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0055085 "transmembrane transport" evidence=TAS

UNIPROTKB|F6Q413 SLC27A1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 956 (341.6 bits), Expect = 3.7e-96, P = 3.7e-96
 Identities = 189/410 (46%), Positives = 264/410 (64%)

Query:    71 TF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQ 129
             TF Q++ +SN +AN F+  G   GD VA+F+EG+PE+V +WLGL+K G+ AA +N N R+
Sbjct:    49 TFAQLDAYSNAVANLFRQLGFVPGDVVAIFLEGRPEFVGLWLGLAKAGMEAALLNINLRR 108

Query:   130 HILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISL--YAAGTRRKPQAKVLPSTTLLD 187
               L   +  +  KA+++G EL+ A+ EV   + G SL  + +G  R P+  +LP T LLD
Sbjct:   109 EPLTFCLGTSGAKALVFGEELAVAVAEVSGQL-GKSLVKFCSGDSR-PEG-LLPDTQLLD 165

Query:   188 EELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLT 247
               L E S  +P          D+L YIYTSGTTGLPKAA++ H R   +A  G +   + 
Sbjct:   166 PLLKETST-APLAQPPGKGMDDRLFYIYTSGTTGLPKAAIVVHSRYYRIAAFGHHSYRMQ 224

Query:   248 SDDVVYTTLPLYHTAXXXXXXXXXXXXXSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEM 307
             + DV+Y  LPLYH+A              TVV+R KFSAS FW+DC+KYNCTV QYIGE+
Sbjct:   225 ATDVIYDCLPLYHSAGNIVGVGQCLIYGLTVVLRKKFSASRFWEDCVKYNCTVVQYIGEI 284

Query:   308 CRYLLAVPEKPEDTQHSVKMMIGNGLRPQVWEPFQKRFGLDRICEFYGATEGNANLMNAD 367
             CRYLL  P +  + QH V++ +GNGLRP +WE F +RFG+ +I EFYGATE N ++ N D
Sbjct:   285 CRYLLKQPVREAEGQHRVRLAVGNGLRPAIWEEFTERFGVRQIGEFYGATECNCSIANMD 344

Query:   368 GKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAE 427
             GKVGA G+   I    YP+ L+K + +T E +R+  GLCIPC+A EPG+L+G I +    
Sbjct:   345 GKVGACGFNSRILPHVYPIRLVKVNEDTMELLRDAQGLCIPCQAGEPGLLVGQINQQDPL 404

Query:   428 SHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGD 477
               F+GY  + A+ KKI  +V+  GD+A+ +GD+L+ D+  Y YF+DR+GD
Sbjct:   405 RRFDGYISESATSKKIAHSVFCKGDSAYLSGDVLVMDELGYMYFRDRSGD 454

GO:0071902 "positive regulation of protein serine/threonine kinase activity" evidence=IEA

GO:0071072 "negative regulation of phospholipid biosynthetic process" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0033211 "adiponectin-mediated signaling pathway" evidence=IEA

GO:0032868 "response to insulin stimulus" evidence=IEA

GO:0032049 "cardiolipin biosynthetic process" evidence=IEA

GO:0031957 "very long-chain fatty acid-CoA ligase activity" evidence=IEA

GO:0031652 "positive regulation of heat generation" evidence=IEA

GO:0015909 "long-chain fatty acid transport" evidence=IEA

GO:0015245 "fatty acid transporter activity" evidence=IEA

GO:0009409 "response to cold" evidence=IEA

GO:0006661 "phosphatidylinositol biosynthetic process" evidence=IEA

GO:0006659 "phosphatidylserine biosynthetic process" evidence=IEA

GO:0006656 "phosphatidylcholine biosynthetic process" evidence=IEA

GO:0006654 "phosphatidic acid biosynthetic process" evidence=IEA

GO:0006646 "phosphatidylethanolamine biosynthetic process" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0001579 "medium-chain fatty acid transport" evidence=IEA

UNIPROTKB|Q6P1M0 SLC27A4 "Long-chain fatty acid transport protein 4" [Homo sapiens (taxid:9606)]

 Score = 949 (339.1 bits), Expect = 2.0e-95, P = 2.0e-95
 Identities = 194/433 (44%), Positives = 274/433 (63%)

Query:    52 LFVRTIREVPMTGA--YKYTVTF----QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPE 105
             LF  T+R  P   A  ++ T T     Q++++S+ +ANF +++GL  GD  A+FME + E
Sbjct:    79 LFASTVRRHPDKTALIFEGTDTHWTFRQLDEYSSSVANFLQARGLASGDVAAIFMENRNE 138

Query:   106 YVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSI-PGI 164
             +V +WLG++K+GV AA INTN R+  L+H +  +  +A+++G+E++ A+ EV  S+ P +
Sbjct:   139 FVGLWLGMAKLGVEAALINTNLRRDALLHCLTTSRARALVFGSEMASAICEVHASLDPSL 198

Query:   165 SLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPK 224
             SL+ +G+  +P A V PST  LD  L +     P+   K    +DKL YIYTSGTTGLPK
Sbjct:   199 SLFCSGSW-EPGA-VPPSTEHLDPLLKDAPKHLPSCPDKGF--TDKLFYIYTSGTTGLPK 254

Query:   225 AAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAXXXXXXXXXXXXXSTVVIRSKF 284
             AA++ H R   MA    Y   +  +D+VY  LPLYH+A              TVVIR KF
Sbjct:   255 AAIVVHSRYYRMAALVYYGFRMRPNDIVYDCLPLYHSAGNIVGIGQCLLHGMTVVIRKKF 314

Query:   285 SASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMIGNGLRPQVWEPFQKR 344
             SAS FW DCIKYNCT+ QYIGE+CRYLL  P +  + QH V+M +GNGLR  +W  F  R
Sbjct:   315 SASRFWDDCIKYNCTIVQYIGELCRYLLNQPPREAENQHQVRMALGNGLRQSIWTNFSSR 374

Query:   345 FGLDRICEFYGATEGNANLMNADGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDG 404
             F + ++ EFYGATE N +L N D +VGA G+   I    YP+ L++ + +T E IR  DG
Sbjct:   375 FHIPQVAEFYGATECNCSLGNFDSQVGACGFNSRILSFVYPIRLVRVNEDTMELIRGPDG 434

Query:   405 LCIPCKAEEPGILIGMIKESRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKD 464
             +CIPC+  EPG L+G I +      F+GY ++ A+ KKI ++V+  GD A+ TGD+L+ D
Sbjct:   435 VCIPCQPGEPGQLVGRIIQKDPLRRFDGYLNQGANNKKIAKDVFKKGDQAYLTGDVLVMD 494

Query:   465 KFQYFYFKDRTGD 477
             +  Y YF+DRTGD
Sbjct:   495 ELGYLYFRDRTGD 507

GO:0000166 "nucleotide binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0001579 "medium-chain fatty acid transport" evidence=IEA

GO:0005902 "microvillus" evidence=IEA

GO:0031526 "brush border membrane" evidence=IEA

GO:0031957 "very long-chain fatty acid-CoA ligase activity" evidence=IEA

GO:0042760 "very long-chain fatty acid catabolic process" evidence=IEA

GO:0043588 "skin development" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=TAS

GO:0006810 "transport" evidence=TAS

GO:0015245 "fatty acid transporter activity" evidence=TAS

GO:0015908 "fatty acid transport" evidence=TAS

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IDA

GO:0044539 "long-chain fatty acid import" evidence=IDA

GO:0001676 "long-chain fatty acid metabolic process" evidence=IDA

GO:0005886 "plasma membrane" evidence=TAS

GO:0015909 "long-chain fatty acid transport" evidence=TAS

GO:0055085 "transmembrane transport" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P38225	FAT1_YEAST	No assigned EC number	0.3154	0.8935	0.6397	yes	N/A
Q5RDY4	S27A4_PONAB	6, ., 2, ., 1, ., -	0.4537	0.8935	0.6656	yes	N/A
Q6P1M0	S27A4_HUMAN	6, ., 2, ., 1, ., -	0.4582	0.8935	0.6656	yes	N/A
Q3ZKN0	S27A1_BOVIN	6, ., 2, ., 1, ., -	0.4691	0.8413	0.6238	yes	N/A
P97849	S27A1_RAT	6, ., 2, ., 1, ., -	0.4691	0.8413	0.6238	yes	N/A
Q60714	S27A1_MOUSE	6, ., 2, ., 1, ., -	0.4691	0.8413	0.6238	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.2.1	0.766

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	479
cd05939	474	cd05939, hsFATP4_like, Fatty acid transport protei	0.0
PRK08279	600	PRK08279, PRK08279, long-chain-acyl-CoA synthetase	1e-178
cd05940	444	cd05940, FATP_FACS, Fatty acid transport proteins	1e-149
cd05938	535	cd05938, hsFATP2a_ACSVL_like, Fatty acid transport	1e-144
cd05937	468	cd05937, FATP_chFAT1_like, Uncharacterized subfami	2e-91
COG0318	534	COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/	9e-69
pfam00501	412	pfam00501, AMP-binding, AMP-binding enzyme	8e-67
cd05934	421	cd05934, FACL_DitJ_like, Uncharacterized subfamily	2e-57
PRK06155	542	PRK06155, PRK06155, crotonobetaine/carnitine-CoA l	1e-52
PRK07867	529	PRK07867, PRK07867, acyl-CoA synthetase; Validated	2e-42
PRK13388	540	PRK13388, PRK13388, acyl-CoA synthetase; Provision	1e-39
PRK08008	517	PRK08008, caiC, putative crotonobetaine/carnitine-	2e-37
cd04433	338	cd04433, AFD_class_I, Adenylate forming domain, Cl	4e-37
cd05911	487	cd05911, Firefly_Luc_like, Firefly luciferase of l	2e-35
COG0365	528	COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat	3e-33
cd05936	468	cd05936, FC-FACS_FadD_like, Prokaryotic long-chain	1e-32
PRK06187	521	PRK06187, PRK06187, long-chain-fatty-acid--CoA lig	3e-32
cd05935	430	cd05935, LC_FACS_like, Putative long-chain fatty a	5e-29
cd05929	342	cd05929, BACL_like, Bacterial Bile acid CoA ligase	1e-26
cd05959	506	cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and	2e-25
PRK08314	546	PRK08314, PRK08314, long-chain-fatty-acid--CoA lig	1e-23
PRK07529	632	PRK07529, PRK07529, AMP-binding domain protein; Va	1e-23
cd05926	345	cd05926, FACL_fum10p_like, Subfamily of fatty acid	5e-23
PRK08276	502	PRK08276, PRK08276, long-chain-fatty-acid--CoA lig	2e-22
PRK07868	994	PRK07868, PRK07868, acyl-CoA synthetase; Validated	1e-21
cd05970	537	cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA s	1e-21
PRK07656	513	PRK07656, PRK07656, long-chain-fatty-acid--CoA lig	5e-21
COG1022	613	COG1022, FAA1, Long-chain acyl-CoA synthetases (AM	2e-20
cd05944	359	cd05944, FACL_like_4, Uncharacterized subfamily of	7e-20
cd05904	504	cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)	7e-20
PRK07514	504	PRK07514, PRK07514, malonyl-CoA synthase; Validate	8e-20
PRK07798	533	PRK07798, PRK07798, acyl-CoA synthetase; Validated	4e-19
cd05972	430	cd05972, MACS_like, Medium-chain acyl-CoA syntheta	8e-19
cd05941	430	cd05941, MCS, Malonyl-CoA synthetase (MCS)	1e-18
PRK08316	523	PRK08316, PRK08316, acyl-CoA synthetase; Validated	2e-18
PRK06087	547	PRK06087, PRK06087, short chain acyl-CoA synthetas	2e-18
PRK07786	542	PRK07786, PRK07786, long-chain-fatty-acid--CoA lig	3e-18
cd05917	347	cd05917, FACL_like_2, Uncharacterized subfamily of	3e-18
PRK07788	549	PRK07788, PRK07788, acyl-CoA synthetase; Validated	3e-18
cd05928	530	cd05928, MACS_euk, Eukaryotic Medium-chain acyl-Co	3e-18
PRK03640	483	PRK03640, PRK03640, O-succinylbenzoic acid--CoA li	7e-18
PRK06839	496	PRK06839, PRK06839, acyl-CoA synthetase; Validated	8e-18
cd05909	489	cd05909, AAS_C, C-terminal domain of the acyl-acyl	1e-17
PRK13391	511	PRK13391, PRK13391, acyl-CoA synthetase; Provision	1e-17
TIGR02262	508	TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil	4e-17
TIGR01923	436	TIGR01923, menE, O-succinylbenzoate-CoA ligase	4e-17
PRK06178	567	PRK06178, PRK06178, acyl-CoA synthetase; Validated	6e-17
cd05922	350	cd05922, FACL_like_6, Uncharacterized subfamily of	8e-17
cd05920	483	cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l	2e-16
cd05903	437	cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li	2e-16
cd05919	436	cd05919, BCL_like, Benzoate CoA ligase (BCL) and s	6e-16
PLN02246	537	PLN02246, PLN02246, 4-coumarate--CoA ligase	1e-15
PRK12583	558	PRK12583, PRK12583, acyl-CoA synthetase; Provision	1e-15
cd05931	547	cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)	2e-15
cd05939	474	cd05939, hsFATP4_like, Fatty acid transport protei	5e-15
cd05973	440	cd05973, MACS_like_2, Uncharacterized subfamily of	7e-15
TIGR01733	409	TIGR01733, AA-adenyl-dom, amino acid adenylation d	8e-14
COG1020	642	COG1020, EntF, Non-ribosomal peptide synthetase mo	9e-14
cd05923	495	cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)	1e-13
PRK08315	559	PRK08315, PRK08315, AMP-binding domain protein; Va	2e-13
TIGR03098	517	TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form	3e-13
PRK08279	600	PRK08279, PRK08279, long-chain-acyl-CoA synthetase	6e-13
cd05940	444	cd05940, FATP_FACS, Fatty acid transport proteins	7e-13
PRK08751	560	PRK08751, PRK08751, putative long-chain fatty acyl	7e-13
cd12119	517	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth	7e-13
PRK04319	570	PRK04319, PRK04319, acetyl-CoA synthetase; Provisi	2e-12
PRK05852	534	PRK05852, PRK05852, acyl-CoA synthetase; Validated	3e-12
PRK06164	540	PRK06164, PRK06164, acyl-CoA synthetase; Validated	3e-12
cd05907	456	cd05907, VL_LC_FACS_like, Long-chain fatty acid Co	4e-12
cd05927	539	cd05927, LC-FACS_euk, Eukaryotic long-chain fatty	5e-12
cd05932	504	cd05932, LC_FACS_bac, Bacterial long-chain fatty a	6e-12
PRK08974	560	PRK08974, PRK08974, long-chain-fatty-acid--CoA lig	9e-12
PRK06145	497	PRK06145, PRK06145, acyl-CoA synthetase; Validated	3e-11
cd12118	520	cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt	4e-11
cd05974	433	cd05974, MACS_like_1, Uncharacterized subfamily of	1e-10
PRK06710	563	PRK06710, PRK06710, long-chain-fatty-acid--CoA lig	4e-10
PRK12406	509	PRK12406, PRK12406, long-chain-fatty-acid--CoA lig	7e-10
cd05912	407	cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase	9e-10
cd05969	443	cd05969, MACS_like_4, Uncharacterized subfamily of	1e-09
cd12114	476	cd12114, A_NRPS_TlmIV_like, The adenylation domain	1e-09
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	2e-09
cd05930	445	cd05930, A_NRPS, The adenylation domain of nonribo	3e-09
cd05968	474	cd05968, AACS_like, Uncharacterized acyl-CoA synth	6e-09
PRK09029	458	PRK09029, PRK09029, O-succinylbenzoic acid--CoA li	7e-09
PRK07059	557	PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig	1e-08
PTZ00216	700	PTZ00216, PTZ00216, acyl-CoA synthetase; Provision	1e-08
PRK08633	1146	PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola	2e-08
cd12117	474	cd12117, A_NRPS_Srf_like, The adenylation domain o	2e-08
PRK09192	579	PRK09192, PRK09192, acyl-CoA synthetase; Validated	2e-08
PRK06018	542	PRK06018, PRK06018, putative acyl-CoA synthetase;	2e-08
cd05971	439	cd05971, MACS_like_3, Uncharacterized subfamily of	3e-08
PRK13295	547	PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig	3e-08
cd05906	560	cd05906, A_NRPS_TubE_like, The adenylation domain	6e-08
PRK05620	576	PRK05620, PRK05620, long-chain-fatty-acid--CoA lig	6e-08
TIGR03208	538	TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate	8e-08
cd05938	535	cd05938, hsFATP2a_ACSVL_like, Fatty acid transport	1e-07
cd05967	607	cd05967, PrpE, Propionyl-CoA synthetase (PrpE)	1e-07
cd05966	602	cd05966, ACS, Acetyl-CoA synthetase (also known as	1e-07
PRK05605	573	PRK05605, PRK05605, long-chain-fatty-acid--CoA lig	2e-07
PRK07787	471	PRK07787, PRK07787, acyl-CoA synthetase; Validated	2e-07
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	2e-07
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	2e-07
PLN02387	696	PLN02387, PLN02387, long-chain-fatty-acid-CoA liga	2e-07
PLN02860	563	PLN02860, PLN02860, o-succinylbenzoate-CoA ligase	3e-07
PRK07470	528	PRK07470, PRK07470, acyl-CoA synthetase; Validated	3e-07
PLN02574	560	PLN02574, PLN02574, 4-coumarate--CoA ligase-like	4e-07
cd05915	509	cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetase	5e-07
PLN02330	546	PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1	7e-07
cd05908	499	cd05908, A_NRPS_MycA_like, The adenylation domain	7e-07
TIGR02316	628	TIGR02316, propion_prpE, propionate--CoA ligase	8e-07
PRK13382	537	PRK13382, PRK13382, acyl-CoA synthetase; Provision	8e-07
PRK08162	545	PRK08162, PRK08162, acyl-CoA synthetase; Validated	9e-07
cd05924	365	cd05924, FACL_like_5, Uncharacterized subfamily of	2e-06
cd05918	447	cd05918, A_NRPS_SidN3_like, The adenylation (A) do	3e-06
TIGR03205	541	TIGR03205, pimA, dicarboxylate--CoA ligase PimA	3e-06
PRK05857	540	PRK05857, PRK05857, acyl-CoA synthetase; Validated	3e-06
PLN03102	579	PLN03102, PLN03102, acyl-activating enzyme; Provis	3e-06
PLN02736	651	PLN02736, PLN02736, long-chain acyl-CoA synthetase	5e-06
PRK12582	624	PRK12582, PRK12582, acyl-CoA synthetase; Provision	7e-06
PLN02654	666	PLN02654, PLN02654, acetate-CoA ligase	8e-06
PRK06814	1140	PRK06814, PRK06814, acylglycerophosphoethanolamine	8e-06
cd05912	407	cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase	9e-06
cd05958	487	cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)	9e-06
PRK05850	578	PRK05850, PRK05850, acyl-CoA synthetase; Validated	1e-05
PRK13390	501	PRK13390, PRK13390, acyl-CoA synthetase; Provision	1e-05
TIGR02188	625	TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase	1e-05
PRK09274	552	PRK09274, PRK09274, peptide synthase; Provisional	2e-05
cd05933	594	cd05933, ACSBG_like, Bubblegum-like very long-chai	3e-05
PLN02479	567	PLN02479, PLN02479, acetate-CoA ligase	3e-05
cd05937	468	cd05937, FATP_chFAT1_like, Uncharacterized subfami	4e-05
PRK06060	705	PRK06060, PRK06060, acyl-CoA synthetase; Validated	5e-05
PRK09088	488	PRK09088, PRK09088, acyl-CoA synthetase; Validated	5e-05
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	5e-05
PRK08043	718	PRK08043, PRK08043, bifunctional acyl-[acyl carrie	8e-05
PLN02430	660	PLN02430, PLN02430, long-chain-fatty-acid-CoA liga	9e-05
PRK07638	487	PRK07638, PRK07638, acyl-CoA synthetase; Validated	9e-05
PRK10524	629	PRK10524, prpE, propionyl-CoA synthetase; Provisio	1e-04
cd05910	455	cd05910, FACL_like_1, Uncharacterized subfamily of	2e-04
PRK10252	1296	PRK10252, entF, enterobactin synthase subunit F; P	2e-04
PRK07768	545	PRK07768, PRK07768, long-chain-fatty-acid--CoA lig	3e-04
PLN02861	660	PLN02861, PLN02861, long-chain-fatty-acid-CoA liga	3e-04
COG1021	542	COG1021, EntE, Peptide arylation enzymes [Secondar	3e-04
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	5e-04
cd05907	456	cd05907, VL_LC_FACS_like, Long-chain fatty acid Co	0.001
PRK05677	562	PRK05677, PRK05677, long-chain-fatty-acid--CoA lig	0.001
PRK06188	524	PRK06188, PRK06188, acyl-CoA synthetase; Validated	0.001
cd05921	559	cd05921, FCS, Feruloyl-CoA synthetase (FCS)	0.001
cd05914	448	cd05914, FACL_like_3, Uncharacterized subfamily of	0.001
cd05918	447	cd05918, A_NRPS_SidN3_like, The adenylation (A) do	0.002
cd05943	616	cd05943, AACS, Acetoacetyl-CoA synthetase (acetoac	0.002
PRK07008	539	PRK07008, PRK07008, long-chain-fatty-acid--CoA lig	0.002
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	0.003
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	0.003
cd05930	445	cd05930, A_NRPS, The adenylation domain of nonribo	0.004
PLN02614	666	PLN02614, PLN02614, long-chain acyl-CoA synthetase	0.004

>gnl|CDD|213305 cd05939, hsFATP4_like, Fatty acid transport proteins (FATP), including FATP4 and FATP1, and similar proteins

 Score =  540 bits (1394), Expect = 0.0
 Identities = 201/408 (49%), Positives = 270/408 (66%), Gaps = 40/408 (9%)

Query: 71  TF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQ 129
           TF ++ ++SN++ANFF+++G + GD VALFME + E+V +WLGL+KIGV  A IN+N R 
Sbjct: 5   TFRELNEYSNKVANFFQAQGYRSGDVVALFMENRLEFVALWLGLAKIGVETALINSNLRL 64

Query: 130 HILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEE 189
             L+H I V++ KA+I+   L + L     + P                           
Sbjct: 65  ESLLHCITVSKAKALIF--NLLDPLLTQSSTEP--------------------------- 95

Query: 190 LPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSD 249
                   P++D    +  DKL YIYTSGTTGLPKAAV+ H R   +A    Y  G+  +
Sbjct: 96  --------PSQDDVNFR--DKLFYIYTSGTTGLPKAAVIVHSRYYRIAAGAYYAFGMRPE 145

Query: 250 DVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCR 309
           DVVY  LPLYH+AGG++G+GQ LL GSTVVIR KFSASNFW DC+KYNCT+ QYIGE+CR
Sbjct: 146 DVVYDCLPLYHSAGGIMGVGQALLHGSTVVIRKKFSASNFWDDCVKYNCTIVQYIGEICR 205

Query: 310 YLLAVPEKPEDTQHSVKMMIGNGLRPQVWEPFQKRFGLDRICEFYGATEGNANLMNADGK 369
           YLLA P   E+ +H+V++ +GNGLRPQ+WE F +RFG+ +I EFYGATEGN++L+N D  
Sbjct: 206 YLLAQPPSEEEQKHNVRLAVGNGLRPQIWEQFVRRFGIPQIGEFYGATEGNSSLVNIDNH 265

Query: 370 VGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESH 429
           VGA G+   I    YP+ LIK D +T E IR+ DGLCIPC+  EPG+L+G I ++     
Sbjct: 266 VGACGFNSRILPSVYPIRLIKVDEDTGELIRDSDGLCIPCQPGEPGLLVGKIIQNDPLRR 325

Query: 430 FNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGD 477
           F+GY ++ A+ KKI R+V+  GD+AF +GD+L+ D+  Y YFKDRTGD
Sbjct: 326 FDGYVNEGATNKKIARDVFKKGDSAFLSGDVLVMDELGYLYFKDRTGD 373

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes FATP4, FATP1, and homologous proteins. Each FATP has unique patterns of tissue distribution. FATP4 is mainly expressed in the brain, testis, colon and kidney. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 474

>gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated

 Score =  512 bits (1322), Expect = e-178
 Identities = 182/407 (44%), Positives = 239/407 (58%), Gaps = 24/407 (5%)

Query: 79  NRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKV 138
           NR A++  ++G+ +GD VAL ME +PEY+  WLGL+K+G V A +NT QR  +L HS+ +
Sbjct: 73  NRYAHWAAARGVGKGDVVALLMENRPEYLAAWLGLAKLGAVVALLNTQQRGAVLAHSLNL 132

Query: 139 AECKAIIYGAELSEALTEVKDSI-PGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKS 197
            + K +I G EL EA  E +  +     L+ AG                 E+L   +A +
Sbjct: 133 VDAKHLIVGEELVEAFEEARADLARPPRLWVAGGDTLDD-------PEGYEDLAAAAAGA 185

Query: 198 PTEDIKKNKPS-------DKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDD 250
           PT     N  S       D   YIYTSGTTGLPKAAVM+H+R +           LT DD
Sbjct: 186 PTT----NPASRSGVTAKDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGFGGLLRLTPDD 241

Query: 251 VVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRY 310
           V+Y  LPLYH  GG +     L  G+T+ +R KFSAS FW D  +Y  T  QYIGE+CRY
Sbjct: 242 VLYCCLPLYHNTGGTVAWSSVLAAGATLALRRKFSASRFWDDVRRYRATAFQYIGELCRY 301

Query: 311 LLAVPEKPEDTQHSVKMMIGNGLRPQVWEPFQKRFGLDRICEFYGATEGNANLMNADGKV 370
           LL  P KP D  H +++MIGNGLRP +W+ FQ+RFG+ RI EFY A+EGN   +N     
Sbjct: 302 LLNQPPKPTDRDHRLRLMIGNGLRPDIWDEFQQRFGIPRILEFYAASEGNVGFINVFNFD 361

Query: 371 GAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHF 430
           G VG +P      +P  ++K D +T EP+R+ DG CI  K  E G+LIG I +      F
Sbjct: 362 GTVGRVPLWLA--HPYAIVKYDVDTGEPVRDADGRCIKVKPGEVGLLIGRITDR---GPF 416

Query: 431 NGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGD 477
           +GY D +ASEKKILR+V+  GDA FNTGD++  D F +  F DR GD
Sbjct: 417 DGYTDPEASEKKILRDVFKKGDAWFNTGDLMRDDGFGHAQFVDRLGD 463

Length = 600

>gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes

 Score =  433 bits (1116), Expect = e-149
 Identities = 161/405 (39%), Positives = 218/405 (53%), Gaps = 70/405 (17%)

Query: 73  QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHIL 132
           +    +NR A+  ++ G+++GD VAL ME +PEY+  WL L+K+G VAA INT QR    
Sbjct: 8   EFNAWANRYAHALRALGVKKGDVVALLMENRPEYLLAWLALAKLGAVAALINTTQR---- 63

Query: 133 IHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPE 192
                         G  L+  +                      A+ +            
Sbjct: 64  --------------GEVLAHCINVSD------------------ARAVIVDPAF------ 85

Query: 193 VSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVV 252
                               YIYTSGTTGLPKAA+M+H R +           L  DDV+
Sbjct: 86  --------------------YIYTSGTTGLPKAAIMSHRRWLRAGAVFGGLGLLKPDDVL 125

Query: 253 YTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLL 312
           Y  LPLYH+    +G    L  G+++ +R KFSAS FW D  +Y  T  QY+GE+CRYLL
Sbjct: 126 YLCLPLYHSNALTVGWSSALAAGASLALRRKFSASQFWPDVRRYGATAFQYVGELCRYLL 185

Query: 313 AVPEKPEDTQHSVKMMIGNGLRPQVWEPFQKRFGLDRICEFYGATEGNANLMNADGKVGA 372
             PEKP+D  H ++ +IGNGLRP +W+ F++RFG+ RI EFYG+TEGN   +N   K GA
Sbjct: 186 NQPEKPDDRDHPLRKIIGNGLRPDIWDEFKERFGVPRIVEFYGSTEGNVGFINLFNKPGA 245

Query: 373 VGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNG 432
           VG +P        + ++K D ET EPIR+ +G CI     E G+L+G I +      F+G
Sbjct: 246 VGRLPP-----AAIAVVKYDVETEEPIRDANGFCIKVPPGEVGLLLGEITDRNP---FDG 297

Query: 433 YADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGD 477
           Y D +A+EKKILR+V+  GDA FNTGD++ +D F YFYF DR GD
Sbjct: 298 YTDDEATEKKILRDVFKKGDAYFNTGDLVRRDGFGYFYFVDRLGD 342

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444

>gnl|CDD|213304 cd05938, hsFATP2a_ACSVL_like, Fatty acid transport proteins (FATP) including hsFATP2, hsFATP5, and hsFATP6, and similar proteins

 Score =  424 bits (1091), Expect = e-144
 Identities = 177/416 (42%), Positives = 247/416 (59%), Gaps = 17/416 (4%)

Query: 69  TVTFQ-VEDHSNRIANFFKSK-GLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTN 126
           TVT+  V+  SN++A    +  GL+ GD VAL +  +P ++ +WLGL+K+G   AF+NTN
Sbjct: 3   TVTYAEVDKRSNQVARALLAHAGLKPGDTVALLLGNEPAFLWIWLGLAKLGCPTAFLNTN 62

Query: 127 QRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIP--GISLYAAGTRRKPQAKVLPSTT 184
            R   L+H  +    + ++   EL EA+ E+  ++   G+ ++       P         
Sbjct: 63  IRSGSLLHCFRCCGARVLVADPELLEAVEEILPALRAMGVRVFYLSHTSPP-----EGVI 117

Query: 185 LLDEELPEVSAKSPTEDIKKN-KPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQ 243
            L  ++   S +     ++          YIYTSGTTGLPKAA ++H+R +    SG   
Sbjct: 118 SLLAKVDAASDEPVPASLRSGVSIRSTALYIYTSGTTGLPKAARISHLRVLQC--SGMLS 175

Query: 244 -TGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQ 302
             G+T+DDVVYTTLPLYH++G LLGI  C+  G+T+V++ KFSAS FW DC KYN TV Q
Sbjct: 176 LCGVTADDVVYTTLPLYHSSGALLGIVGCIGLGATLVLKPKFSASQFWDDCRKYNVTVFQ 235

Query: 303 YIGEMCRYLLAVPEKPEDTQHSVKMMIGNGLRPQVWEPFQKRFGLDRICEFYGATEGNAN 362
           YIGE+ RYL   P+   D  H V++ IGNGLRP VW  F +RFG   + E Y +TEGN  
Sbjct: 236 YIGELLRYLCNQPQSDNDRDHKVRLAIGNGLRPDVWREFLRRFGPIHVWETYASTEGNIG 295

Query: 363 LMNADGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIK 422
            +N  G+VGAVG    +     P  LIK D E  EP+R+  G CIP    EPG+LI  I 
Sbjct: 296 FINYTGRVGAVGRASCLYKLLSPFELIKYDVEKDEPVRDAQGFCIPVGKGEPGLLISKIT 355

Query: 423 ESRAESHFNGYA-DKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGD 477
              ++S F GYA  ++ +EKK+LR+V+  GD  FNTGD+L++D+  + YF DRTGD
Sbjct: 356 ---SQSPFLGYAGPRELTEKKLLRDVFKKGDVYFNTGDLLVQDRQNFLYFHDRTGD 408

Fatty acid transport proteins (FATP) of this family transport long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes hsFATP2, hsFATP5, and hsFATP6, and similar proteins. Each FATP has unique patterns of tissue distribution. These FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. The hsFATP proteins exist in two splice variants; the b variant, lacking exon 3, has no acyl-CoA synthetase activity. FATPs are key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 535

>gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of bifunctional fatty acid transporter/very-long-chain acyl-CoA synthetase in fungi

 Score =  285 bits (731), Expect = 2e-91
 Identities = 143/419 (34%), Positives = 195/419 (46%), Gaps = 71/419 (16%)

Query: 69  TVTF-QVEDHSNRIANFFKS-KGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTN 126
           T T+ +  D   R A++    + +Q GD VA+      E+V +WL L  IG V AFIN N
Sbjct: 5   TWTYSETYDLVLRYAHWLHGDRNVQSGDFVAIDTTNSAEFVFLWLALWSIGAVPAFINYN 64

Query: 127 QRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLL 186
                LIH +K++  K +I           V    P   +Y +G                
Sbjct: 65  LSGDPLIHCLKISGAKFVI-----------VDPDDPAALIYTSG---------------- 97

Query: 187 DEELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGL 246
                                           TTGLPK   ++  R +  +    +   L
Sbjct: 98  --------------------------------TTGLPKGCAISWRRTLVTSNPLSHDLNL 125

Query: 247 TSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQYIGE 306
              D  YT +PLYH     LG+  CL  G T+ +  KFSAS FWKD      T+ QY+GE
Sbjct: 126 QFPDRTYTCMPLYHGTAAFLGLCYCLGSGGTLCLSRKFSASQFWKDVRDSEATIIQYVGE 185

Query: 307 MCRYLLAVPEKPEDTQHSVKMMIGNGLRPQVWEPFQKRFGLDRICEFYGATEGNANLMNA 366
           +CRYLLA P  P D  H V++  GNGLRP +WE F++RF +  I EFY ATEG     N 
Sbjct: 186 LCRYLLATPPSPYDRDHKVRVAYGNGLRPDIWERFRERFNVPEIGEFYAATEGVFAFTNH 245

Query: 367 D------GKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIR-NKDGLCIPCKAEEPGILIG 419
           +      G +G  G I    +    V L+K DPET  PIR  K G C+     EPG ++G
Sbjct: 246 NVGPFTAGAIGFSGLIRRWFLEN-QVFLVKMDPETDMPIRDPKTGFCVRAPVGEPGEMLG 304

Query: 420 MIKESRAESHFNGY-ADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGD 477
            ++    E  F GY  ++ A+E K+LR+V+  GD  + TGD+L +D    +YF DR GD
Sbjct: 305 RVRFKNREL-FQGYLKNEDATESKLLRDVFRKGDIWYRTGDLLRQDADGRWYFLDRLGD 362

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Members of this family are fungal FATPs, including FAT1 from Cochliobolus heterostrophus. Length = 468

>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

 Score =  228 bits (583), Expect = 9e-69
 Identities = 122/459 (26%), Positives = 190/459 (41%), Gaps = 54/459 (11%)

Query: 38  ISGMQKTLPTYARPLFVRTIREVPMTGAYKY-----TVTF-QVEDHSNRIANFFKSKGLQ 91
              M+ T       L  R  R  P   A  +      +T+ +++  +NR+A   ++ G++
Sbjct: 2   NRLMRMTAELTLASLLERAARRNPDRPALIFLGRGGRLTYRELDRRANRLAAALQALGVK 61

Query: 92  RGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVAECKAIIYGAELS 151
            GD VA+ +   PE++  +L   + G VA  +N       L + +  A  K +I  AE +
Sbjct: 62  PGDRVAILLPNSPEFLIAFLAALRAGAVAVPLNPRLTPRELAYILNDAGAKVLITSAEFA 121

Query: 152 EALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTEDIKKNKPSDKL 211
             L  V +++P + +                   L+    E     P  D +   P D  
Sbjct: 122 ALLEAVAEALPVVLVVLLVG-----DADDRLPITLEALAAE--GPGPDADARPVDPDDLA 174

Query: 212 AYIYTSGTTGLPKAAVMTH--VRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIG 269
             +YTSGTTGLPK  V+TH  + A    I+     GLT DDVV + LPL+H  G ++G+ 
Sbjct: 175 FLLYTSGTTGLPKGVVLTHRNLLANAAGIAAALGGGLTPDDVVLSWLPLFHIFGLIVGLL 234

Query: 270 QCLLGGSTVVIRS--KFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEK-PEDTQHSVK 326
             LLGG T+V+ S   F          KY  TV   +    R LL  PEK  +D   S++
Sbjct: 235 APLLGGGTLVLLSPEPFDPEEVLWLIEKYKVTVLSGVPTFLRELLDNPEKDDDDLSSSLR 294

Query: 327 MMIGNG--LRPQVWEPFQKRFGLDRICEFYGATEG-----NANLMNADGKVGAVGYIPYI 379
           +++  G  L P++ E F++RFG   I E YG TE           +   K G+VG     
Sbjct: 295 LVLSGGAPLPPELLERFEERFGPIAILEGYGLTETSPVVTINPPDDLLAKPGSVG----- 349

Query: 380 AIPFYPVGLIKCDPETSEPIRNKDG-LCIPCKAEEPGILIGMIKESRAESHFNGYADKKA 438
             P   V +   DP+  E +  + G + +                 R  +   GY ++  
Sbjct: 350 -RPLPGVEVRIVDPDGGEVLPGEVGEIWV-----------------RGPNVMKGYWNRPE 391

Query: 439 SEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGD 477
           +  +         D    TGD+   D+  Y Y   R  D
Sbjct: 392 ATAEAFDE-----DGWLRTGDLGYVDEDGYLYIVGRLKD 425

Length = 534

>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme

 Score =  219 bits (561), Expect = 8e-67
 Identities = 99/411 (24%), Positives = 158/411 (38%), Gaps = 37/411 (9%)

Query: 73  QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHIL 132
           ++++ +NR+A   ++ G+  GD VA+ +   PE+V   L + K G     ++ +     L
Sbjct: 4   ELDERANRLAAALRALGVGPGDRVAILLPNSPEWVVAILAVLKAGAAYVPLDPSLPAERL 63

Query: 133 IHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPE 192
            + ++ +E K +I   EL   L EV   +                       L   +   
Sbjct: 64  AYILEDSEAKVLITDDELLPKLLEVLLKLL--------VLLALIIVGDDGEGLDLLDDEL 115

Query: 193 VSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVV 252
           ++  S         P D    IYTSGTTG PK  ++TH   + +A     + GLT  D V
Sbjct: 116 LAGASAEPPAPPVDPDDLAYIIYTSGTTGKPKGVMLTHRNLLALAAGLAERFGLTPGDRV 175

Query: 253 YTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFS--ASNFWKDCIKYNCTVAQYIGEMCRY 310
              LP  H  G +  I   LL G T+V+  KF+   +       KY  TV   +  + R 
Sbjct: 176 LLLLP-LHFDGSVWEIFGPLLAGGTLVLVPKFTLDPARLLDLIEKYKVTVLYGVPTLLRL 234

Query: 311 LLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFYGATEGNANLMNADG 368
           LL  PE+ +    S+++++  G  L P++    ++RFG   +   YG TE          
Sbjct: 235 LLKAPEEKKYDLSSLRLVLSGGEPLPPELLRRLRERFGGVPLVNGYGPTETTVVATANLP 294

Query: 369 KVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPG-ILIGMIKESRAE 427
               V     I  P   V +   D E             P    E G + I      R  
Sbjct: 295 GDPEVKPGS-IGRPLPGVEVKVLDEEG-----------EPVPPGEVGELCI------RGP 336

Query: 428 SHFNGY-ADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGD 477
               GY  D + + ++ +      G   + TGD+   D+  Y     R  D
Sbjct: 337 GVARGYLNDPELTAERFV----EDGWGMYRTGDLGRWDEDGYLEILGRKDD 383

Length = 412

>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  195 bits (497), Expect = 2e-57
 Identities = 100/413 (24%), Positives = 160/413 (38%), Gaps = 91/413 (22%)

Query: 69  TVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQ 127
             T+ ++ +  NR+A    + G++ GD VAL ++  PE++  W  L+K+G VA  INT  
Sbjct: 3   RYTYAELAERVNRLAAGLLALGVRPGDRVALMLDNCPEFLRAWFALNKLGAVAVPINTAL 62

Query: 128 RQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLD 187
           R   L H +  +  + I+           +        LY +GT   P+  +L       
Sbjct: 63  RGEELAHILDHSGARLIVV------DTAAI--------LYTSGTTGPPKGVLLTH----- 103

Query: 188 EELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLT 247
                                   A +  +                   A          
Sbjct: 104 ------------------------AQLLFAA---------------RLAARLLGL----R 120

Query: 248 SDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEM 307
            DDV+ T LPL+H       +   LL G+T+V+  +FSAS FW    K+  TV   +G M
Sbjct: 121 PDDVLLTPLPLFHINAQAYSVYAALLVGATLVLLPRFSASRFWDQVRKHGATVFNLLGAM 180

Query: 308 CRYLLAVPEKPEDTQHSVKMMIGNGLRPQVWEPFQKRFGLDRICEFYGATEGNANLMNAD 367
              L+  P  P+D  H ++ + G  L   +W  F++RFG+ ++ E YG TE    ++   
Sbjct: 181 AAILMKQPPSPDDRDHPLRFVFGAPLPAAIWPAFEERFGV-KLVEGYGMTETGVPIIAPG 239

Query: 368 --GKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESR 425
                G+ G       P   V ++  D +                  E G L+  ++  R
Sbjct: 240 DPAPPGSCGRPR----PGVEVRIV--DEDG-----------REVPPGEVGELV--VRPRR 280

Query: 426 AESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDA 478
             + F GY     +  K  RN +      F+TGD   +D+  + YF DR  DA
Sbjct: 281 PWAMFKGYYGMPEATAKAWRNGW------FHTGDRGRRDEDGFLYFVDRKKDA 327

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421

>gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional

 Score =  185 bits (472), Expect = 1e-52
 Identities = 117/409 (28%), Positives = 189/409 (46%), Gaps = 49/409 (11%)

Query: 79  NRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKV 138
              A+   + G++RGD VAL    + E++ ++LG + +G +A  INT  R   L H ++ 
Sbjct: 57  AAAAHALAAAGVKRGDRVALMCGNRIEFLDVFLGCAWLGAIAVPINTALRGPQLEHILRN 116

Query: 139 AECKAIIYGAELSEALTEVKD---SIPGISLY-AAGTRRKPQAKVLPSTTLLDEELPEVS 194
           +  + ++  A L  AL         +P + L  A  +   P      ST      LP + 
Sbjct: 117 SGARLLVVEAALLAALEAADPGDLPLPAVWLLDAPASVSVPAG---WSTA----PLPPLD 169

Query: 195 AKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYT 254
           A +P   ++   P D  A +YTSGTTG  K     H +  +   +      + +DDV+YT
Sbjct: 170 APAPAAAVQ---PGDTAAILYTSGTTGPSKGVCCPHAQFYWWGRNSAEDLEIGADDVLYT 226

Query: 255 TLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAV 314
           TLPL+HT   L    Q LL G+T V+  +FSAS FW    ++  TV   +G M   LL+ 
Sbjct: 227 TLPLFHT-NALNAFFQALLAGATYVLEPRFSASGFWPAVRRHGATVTYLLGAMVSILLSQ 285

Query: 315 PEKPEDTQHSVKMMIGNGLRPQVWEPFQKRFGLDRICEFYGATEGNA--NLMNADGKVGA 372
           P +  D  H V++ +G G+   +   F++RFG+D + + YG+TE N    + +   + G+
Sbjct: 286 PARESDRAHRVRVALGPGVPAALHAAFRERFGVDLL-DGYGSTETNFVIAVTHGSQRPGS 344

Query: 373 VGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHF-- 430
           +G +                P     + ++    +P    EPG L+      RA+  F  
Sbjct: 345 MGRLA---------------PGFEARVVDEHDQELP--DGEPGELL-----LRADEPFAF 382

Query: 431 -NGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDA 478
             GY        +  RN++      F+TGD +++D   +F F DR  DA
Sbjct: 383 ATGYFGMPEKTVEAWRNLW------FHTGDRVVRDADGWFRFVDRIKDA 425

Length = 542

>gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated

 Score =  157 bits (399), Expect = 2e-42
 Identities = 102/391 (26%), Positives = 173/391 (44%), Gaps = 51/391 (13%)

Query: 96  VALFMEGQPEYVCMWLGLSKI-GVVAAFINTNQRQHILIHSIKVAECKAIIYGAELSEAL 154
           V + ++  PE+  + LG + + G+V   +N  +R   L   I  A+C+ ++  +  +E L
Sbjct: 57  VGVLLDNTPEFS-LLLGAAALSGIVPVGLNPTRRGAALARDIAHADCQLVLTESAHAELL 115

Query: 155 TEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEEL-PEVSAKSPTEDIKKNKPSDKLAY 213
             +   +  I++ +                 L      E   +          P D    
Sbjct: 116 DGLDPGVRVINVDSP-----------AWADELAAHRDAEPPFRVAD-------PDDLFML 157

Query: 214 IYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLL 273
           I+TSGT+G PKA   TH +     +    + GL  DDV Y ++PL+H+   + G    L 
Sbjct: 158 IFTSGTSGDPKAVRCTHRKVASAGVMLAQRFGLGPDDVCYVSMPLFHSNAVMAGWAVALA 217

Query: 274 GGSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMIGNGL 333
            G+++ +R KFSAS F  D  +Y  T A Y+G+   Y+LA PE+P+D  + ++++ GN  
Sbjct: 218 AGASIALRRKFSASGFLPDVRRYGATYANYVGKPLSYVLATPERPDDADNPLRIVYGNEG 277

Query: 334 RPQVWEPFQKRFGLDRICEFYGATEGNANLMNA-DGKVGAVGYI-PYIAIPFYPVGLIKC 391
            P     F +RFG   + + +G+TEG   +    D   GA+G + P +AI          
Sbjct: 278 APGDIARFARRFGC-VVVDGFGSTEGGVAITRTPDTPPGALGPLPPGVAI---------V 327

Query: 392 DPETSEPIRNKDGLCIPCKAEEPGIL-----IGMIKESRAESHFNGYADKKASEKKILRN 446
           DP+T          C P +  +  +L     IG +  +     F GY +   ++ + +R 
Sbjct: 328 DPDTGTE-------CPPAEDADGRLLNADEAIGELVNTAGPGGFEGYYNDPEADAERMR- 379

Query: 447 VYSHGDAAFNTGDILIKDKFQYFYFKDRTGD 477
                   + +GD+  +D   Y YF  R GD
Sbjct: 380 -----GGVYWSGDLAYRDADGYAYFAGRLGD 405

Length = 529

>gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional

 Score =  149 bits (379), Expect = 1e-39
 Identities = 104/390 (26%), Positives = 174/390 (44%), Gaps = 48/390 (12%)

Query: 96  VALFMEGQPEYVCMWLGLSKI-GVVAAFINTNQRQHILIHSIKVAECKAIIYGAELSEAL 154
           V + +   PE +  WL  + + G V   +NT +R   L   I+ A+C+ ++  AE    L
Sbjct: 55  VGVLLGNTPEML-FWLAAAALGGYVLVGLNTTRRGAALAADIRRADCQLLVTDAEHRPLL 113

Query: 155 TEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTEDIKKNKPSDKLAYI 214
             +   +PG+ +    T    +             +    A +P  ++      D    I
Sbjct: 114 DGL--DLPGVRVLDVDTPAYAEL------------VAAAGALTPHREVD---AMDPFMLI 156

Query: 215 YTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLG 274
           +TSGTTG PKA   +H R  F   +   + GLT DDV Y ++PL+H+   + G    +  
Sbjct: 157 FTSGTTGAPKAVRCSHGRLAFAGRALTERFGLTRDDVCYVSMPLFHSNAVMAGWAPAVAS 216

Query: 275 GSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMIGNGLR 334
           G+ V + +KFSAS F  D  +Y  T   Y+G+   Y+LA PE+P+D  + +++  GN   
Sbjct: 217 GAAVALPAKFSASGFLDDVRRYGATYFNYVGKPLAYILATPERPDDADNPLRVAFGNEAS 276

Query: 335 PQVWEPFQKRFGLDRICEFYGATEGNANLMNADGK-VGAVGYIPYIAIPFYPVGLIKCDP 393
           P+    F +RFG  ++ + YG++EG   ++   G   G++G            G+   +P
Sbjct: 277 PRDIAEFSRRFGC-QVEDGYGSSEGAVIVVREPGTPPGSIGR------GA--PGVAIYNP 327

Query: 394 ETSEPIRNKDGLCIPCKAEEPGIL------IGMIKESRAESHFNGYADKKASEKKILRNV 447
           ET          C   + +  G L      IG +  +     F GY +   +  + +R  
Sbjct: 328 ETLTE-------CAVARFDAHGALLNADEAIGELVNTAGAGFFEGYYNNPEATAERMR-- 378

Query: 448 YSHGDAAFNTGDILIKDKFQYFYFKDRTGD 477
             HG   + +GD+  +D   + YF  RT D
Sbjct: 379 --HGM--YWSGDLAYRDADGWIYFAGRTAD 404

Length = 540

>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated

 Score =  143 bits (362), Expect = 2e-37
 Identities = 115/416 (27%), Positives = 169/416 (40%), Gaps = 52/416 (12%)

Query: 73  QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHIL 132
           ++ +  NR AN F S G+++GD VAL ++  PE++  W GL+KIG +   IN    +   
Sbjct: 42  ELNEEINRTANLFYSLGIRKGDKVALHLDNCPEFIFCWFGLAKIGAIMVPINARLLR--- 98

Query: 133 IHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPE 192
                  E   I+  ++ S  +T  +       +Y    +       L    L    LP 
Sbjct: 99  ------EESAWILQNSQASLLVTSAQ----FYPMYRQIQQEDATP--LRHICLTRVALPA 146

Query: 193 VSAKSPTEDIKKNKP----------SDKLAYI-YTSGTTGLPKAAVMTHVRAMFMAISGR 241
               S    +K  +P          +D  A I +TSGTT  PK  V+TH    F      
Sbjct: 147 DDGVSSFTQLKAQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSA 206

Query: 242 YQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVA 301
           +Q  L  DDV  T +P +H              G+T V+  K+SA  FW    KY  T+ 
Sbjct: 207 WQCALRDDDVYLTVMPAFHIDCQCTAAMAAFSAGATFVLLEKYSARAFWGQVCKYRATIT 266

Query: 302 QYIGEMCRYLLAVPEKPEDTQHSVK-MMIGNGLRPQVWEPFQKRFGLDRICEFYGATEGN 360
           + I  M R L+  P    D QH ++ +M    L  Q  + F++RFG+ R+   YG TE  
Sbjct: 267 ECIPMMIRTLMVQPPSANDRQHCLREVMFYLNLSDQEKDAFEERFGV-RLLTSYGMTE-- 323

Query: 361 ANLMNADGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIG- 419
                    VG +G  P     +  +G      E    IR+     +P      G  IG 
Sbjct: 324 -------TIVGIIGDRPGDKRRWPSIGRPGFCYEAE--IRDDHNRPLP-----AGE-IGE 368

Query: 420 -MIKESRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDR 474
             IK    ++ F  Y     +  K+L       D   +TGD    D+  +FYF DR
Sbjct: 369 ICIKGVPGKTIFKEYYLDPKATAKVLE-----ADGWLHTGDTGYVDEEGFFYFVDR 419

Length = 517

>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I

 Score =  138 bits (351), Expect = 4e-37
 Identities = 76/273 (27%), Positives = 114/273 (41%), Gaps = 32/273 (11%)

Query: 211 LAYI-YTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIG 269
            A+I YTSGTTG PK  V++H   +  A +     GLT  DV+ + LPL+H  GG  G+ 
Sbjct: 2   PAFILYTSGTTGKPKGVVLSHRNLLANAQALAQAIGLTEGDVLLSVLPLFHVVGGGSGLL 61

Query: 270 QCLLGGSTVVIRSKFS-ASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMM 328
             LL G TVV+   F    +F +   +Y  TV   +  +   L    E       S++++
Sbjct: 62  GALLAGGTVVLYEGFPFPLSFLELIEQYRVTVLFGVPTLYDALAKAAEDRGYDLSSLRLL 121

Query: 329 IGNG--LRPQVWEPFQKRFGLDRICEFYGATEGNAN-LMNADGKVGAVGYIPYIAIPFYP 385
           I  G  L P++ E F++R G   I E YG TE +     N D ++   G +    +P   
Sbjct: 122 ISGGEPLSPELLERFEERPGA-PILEGYGLTETSVVTSTNPDSELKKPGTVG-RPVPGVE 179

Query: 386 VGLIKCDPETSEPIRNKDGLCIPCKAEEPG-ILIGMIKESRAESHFNGYADKKASEKKIL 444
           V ++  D E             P    E G +++      R      GY +         
Sbjct: 180 VRVV--DEEGK-----------PLPPGEVGELVV------RGPWVMKGYWNNPPETTAAA 220

Query: 445 RNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGD 477
                  D  + TGD+   D+  Y Y   R+ D
Sbjct: 221 T-----EDGWYRTGDLGYLDEEGYLYITGRSKD 248

This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338

>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL)

 Score =  137 bits (347), Expect = 2e-35
 Identities = 108/431 (25%), Positives = 175/431 (40%), Gaps = 68/431 (15%)

Query: 67  KYTVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINT 125
              +TF  +   + R+A   +  GL++GD VAL      E+  ++LG    G + +  N 
Sbjct: 8   GTELTFADLLKKALRLAKGLRKLGLKQGDVVALISPNSIEFPPVFLGCLAAGGIVSAANP 67

Query: 126 NQRQHILIHSIKVAECKAII-YGAEL---SEALTEVKDSIPGISLYAAGTRRKPQAKVLP 181
           +     L H +K+++ K I     EL    EA  E+   +  I L +A         +L 
Sbjct: 68  SYTPDELAHQLKISKPKLIFCDPDELDKVKEAAKELGPVVRIIVLDSAPDGVLRIEDLLE 127

Query: 182 STTLLDEELPEVSAKSPTEDIKKNKPSDKLAYI-YTSGTTGLPKAAVMTH---VRAMFMA 237
                ++E          +D          A + Y+SGTTGLPK  +++H   +  +   
Sbjct: 128 PRLGAEDEFRPTPLIDGKDDT---------AALLYSSGTTGLPKGVMLSHKNIIANLSQV 178

Query: 238 ISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYN 297
                    +S+DVV T LP YH A GL      LL G+TV+I  KF +  F K   KY 
Sbjct: 179 QDTLKGNPDSSNDVVLTFLPFYH-AYGLTTTLASLLCGATVIIMPKFDSETFLKLIEKYK 237

Query: 298 CTVAQ---YIGEMCRYLLAVPEKPEDTQH---SVKMM--IGNGLRPQVWEPFQKRFGLDR 349
            T       I       +A+ + P   ++   S++++      L  ++ E  +KRF    
Sbjct: 238 VTSLFLVPPI------AVALAKSPLVDKYDLSSLRVIFSGAAPLSKELQEELRKRFPNTT 291

Query: 350 ICEFYGATE--GNANLMNA-DGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPI-RNKDG- 404
           I + YG TE      L    D K G+VG +    +P     ++  D +  + +  N+ G 
Sbjct: 292 IKQGYGMTETGPATTLTPPGDEKPGSVGRL----VPNVEAKIV--DEDGGKSLGPNERGE 345

Query: 405 LCIPCKAEEPGILIGMIKESRAESHFNGY-ADKKASEKKILRNVYSHGDAAFNTGDILIK 463
           LC+                 +      GY  + +A+++ I        D   +TGDI   
Sbjct: 346 LCV-----------------KGPQIMKGYLNNPEATKETIDE------DGWLHTGDIGYF 382

Query: 464 DKFQYFYFKDR 474
           D+   FY  DR
Sbjct: 383 DEDGNFYIVDR 393

This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487

>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

 Score =  131 bits (332), Expect = 3e-33
 Identities = 96/429 (22%), Positives = 160/429 (37%), Gaps = 68/429 (15%)

Query: 69  TVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQ 127
            +T+  +     R+AN  K  G  +GD VA++M   PE V   L  ++IG + A ++   
Sbjct: 40  ELTYGDLRREVARLANALKDLGGVKGDRVAIYMPNSPEAVIALLATARIGAIPAVVSPGL 99

Query: 128 RQHILIHSIKVAECKAIIYGAELSEALTEV---KDSIPGISLYAAGTRRKPQAKVLPSTT 184
               +   I     K +I          E+   +D+   +S      R            
Sbjct: 100 SAEAVADRIADLGPKVLIADDGTFRNGKEIALLEDADAVLSSVVVVPRLG---------L 150

Query: 185 LLDEELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTH----VRAMFMAISG 240
             DE + + S K   E +  + P   L  +YTSGTTG PK  V +H    V     A   
Sbjct: 151 WYDEAVEKASEKFEFEPLPADDP---LFLLYTSGTTGKPKGIVHSHGGYLVEHRLTA--- 204

Query: 241 RYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVI---RSKFSASNFWKDCIKYN 297
           ++   L   D  + +       G    +   L  G+T V+   R  +S    W+   KY 
Sbjct: 205 KFHGDLLPGDRFWNSSDPGWIYGLWYSVFSPLASGATTVLYDGRPFYSPERLWEALEKYK 264

Query: 298 ----CTVAQYIGEMCRYLLAVPE-KPEDTQHSVKMMIGNG--LRPQVWEPFQKRFGLDRI 350
                T   ++    R L+ +   +P D   S++++   G  L P+ +E F    G+  I
Sbjct: 265 VTIFGTSPTFL----RRLMKLGLGEPYDLS-SLRVLGSAGEPLNPEAFEWFYSALGV-WI 318

Query: 351 CEFYGATE-GNANLMNA-DGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIP 408
            + YG TE G   +      K G+ G    + +P Y V  +  D E +        L + 
Sbjct: 319 LDIYGQTETGMGFIAGRPPVKNGSSG----LPLPGYAVRRV--DDEGNPVPPGVGELVV- 371

Query: 409 CKAEEPGILIGMIKESRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQY 468
            +   PG+ +              + D +  ++      Y  GD A        +D+  Y
Sbjct: 372 -RLPWPGMALTY------------WNDPERYKEAYFGRWYRTGDWAE-------RDEDGY 411

Query: 469 FYFKDRTGD 477
           F+   R+ D
Sbjct: 412 FWLHGRSDD 420

Length = 528

>gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD

 Score =  129 bits (326), Expect = 1e-32
 Identities = 104/440 (23%), Positives = 172/440 (39%), Gaps = 90/440 (20%)

Query: 52  LFVRTIREVPMTGAYKY---TVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYV 107
           L  R  R  P   A  +    +T+ ++++ S+R A + +  G+++GD VAL +   P++ 
Sbjct: 4   LLERAARRFPDRPALTFFGRKLTYAELDELSDRFAAYLQQLGVKKGDRVALMLPNCPQFP 63

Query: 108 CMWLGLSKIGVVAAFINTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLY 167
             + G+ K G V   +N       L H +  +  K +I      +AL             
Sbjct: 64  IAYFGILKAGAVVVPVNPLYTPRELEHQLNDSGAKVLIVAISFEDALAS----------- 112

Query: 168 AAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAV 227
                                        +P     +  P D     YT GTTG+PK A+
Sbjct: 113 ----------------------------GAPLPLPVELSPDDLAVLQYTGGTTGVPKGAM 144

Query: 228 MTH--VRAMFMAISGRYQTGLTSDDVVYTTLPLYH----TAGGLLGIGQCLLGGSTVVIR 281
           +TH  + A    I+   +     +D   T LPL+H    T   LLG    L  G+T V+ 
Sbjct: 145 LTHRNLVANVQQIAAWVKDLREGEDRFLTALPLFHIFGLTVNMLLG----LRLGATNVLV 200

Query: 282 SKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMIGNG--LRPQVWE 339
             F   N  K+  +Y  T+   +  +   LL  PE  +    S+++ I  G  L  +V E
Sbjct: 201 PNFRPINVLKEIKRYRFTIFPGVPTLYNALLNHPEFKKYDFSSLRLCISGGAPLPVEVAE 260

Query: 340 PFQKRFGLDRICEFYGATEGN----ANLMNADGKVGAVGYIPYIAIPFYPVGLIKCDPET 395
            F+++ G   + E YG TE +     N ++ + K G++G    + +P   V +   D E 
Sbjct: 261 RFEEKTGA-PLVEGYGLTETSPVTTVNPLDGERKPGSIG----LPLPGTEVKI--VDDEG 313

Query: 396 SEPIRNKDG-LCIPCKAEEPGILIGMIKESRAESHFNGYADKKASEKKILRNVYSHGDAA 454
           +E    + G L +                 R      GY ++     ++L + +      
Sbjct: 314 NELPPGEVGELVV-----------------RGPQVMKGYWNRPEETAEVLTDGW------ 350

Query: 455 FNTGDILIKDKFQYFYFKDR 474
             TGDI   D+  YFY  DR
Sbjct: 351 LRTGDIGYMDEDGYFYIVDR 370

This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468

>gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated

 Score =  128 bits (325), Expect = 3e-32
 Identities = 103/432 (23%), Positives = 170/432 (39%), Gaps = 62/432 (14%)

Query: 67  KYTVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINT 125
               T+ ++++  NR+AN  ++ G+++GD VA+F     EY+  +  + KIG V   IN 
Sbjct: 29  GRRTTYAELDERVNRLANALRALGVKKGDRVAVFDWNSHEYLEAYFAVPKIGAVLHPINI 88

Query: 126 ----NQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGIS---LYAAGTRRKPQAK 178
                +  +IL      AE + ++  +E    L  +   +P +    +   G       +
Sbjct: 89  RLKPEEIAYILND----AEDRVVLVDSEFVPLLAAILPQLPTVRTVIVEGDGPAAPLAPE 144

Query: 179 VLPSTTLLDEELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMF-MA 237
           V     LL        A S T D      +D  A +YTSGTTG PK  V++H R +F  +
Sbjct: 145 VGEYEELLA-------AASDTFDFPDIDENDAAAMLYTSGTTGHPKGVVLSH-RNLFLHS 196

Query: 238 ISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYN 297
           ++      L+ DDV    +P++H     L     + G   V+ R  F   N         
Sbjct: 197 LAVCAWLKLSRDDVYLVIVPMFHVHAWGLPYLALMAGAKQVIPRR-FDPENLLDLIETER 255

Query: 298 CTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFYG 355
            T    +  + + LL  P        S++++I  G  L P +   F+++FG+D + + YG
Sbjct: 256 VTFFFAVPTIWQMLLKAPRAYFVDFSSLRLVIYGGAALPPALLREFKEKFGID-LVQGYG 314

Query: 356 ATEG---------NANLMNADGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLC 406
            TE             L     K  + G      +P     ++  D +  E         
Sbjct: 315 MTETSPVVSVLPPEDQLPGQWTKRRSAG----RPLPGVEARIV--DDDGDE--------- 359

Query: 407 IPCKAEEPGILIGMIKESRAESHFNGY-ADKKASEKKILRNVYSHGDAAFNTGDILIKDK 465
           +P    E G +I      R      GY    +A+ + I    + H      TGD+   D+
Sbjct: 360 LPPDGGEVGEII-----VRGPWLMQGYWNRPEATAETI-DGGWLH------TGDVGYIDE 407

Query: 466 FQYFYFKDRTGD 477
             Y Y  DR  D
Sbjct: 408 DGYLYITDRIKD 419

Length = 521

>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase

 Score =  118 bits (297), Expect = 5e-29
 Identities = 106/405 (26%), Positives = 160/405 (39%), Gaps = 88/405 (21%)

Query: 76  DHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHS 135
           +  +R+A   + KG+++GD VAL+M+  P++V  +  + + G V   +N   R       
Sbjct: 9   ELVDRLAGLLQEKGVRKGDRVALYMQNSPQFVIAYYAILRAGAVVVPVNPMNR------- 61

Query: 136 IKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSA 195
                       AEL   L +                    A+VL    ++  EL     
Sbjct: 62  -----------EAELEHILNDS------------------GARVL----IVGSEL----- 83

Query: 196 KSPTEDIKKNKPSDKLAYI-YTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYT 254
                        D +A I YTSGTTGLPK  + TH   +  A +    +GLT D V+  
Sbjct: 84  -------------DDVAVIPYTSGTTGLPKGCMHTHRTVLATAAASAAWSGLTPDSVLLA 130

Query: 255 TLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAV 314
            LPL+H AG    +   +  G+T+V+ +++      +   +Y  T    I  M   LLA 
Sbjct: 131 FLPLFHVAGMQGSMNAPIYTGATLVLLTRWDREAAARAIERYRVTHWTNIVTMVVDLLAH 190

Query: 315 PEKPEDTQHSVKMMIGNG--LRPQVWEPFQKRFGLDRICEFYGATEGNA-NLMNAD--GK 369
           P   +    S+K++ G G  L P V E  +   GL    E YG TE +     N     K
Sbjct: 191 PRFADYDLSSLKVVGGGGAALPPAVAERLKALTGLLYE-EGYGLTETHTCTHFNPPDRPK 249

Query: 370 VGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESH 429
              +G      IP +       DPET E +            EE  I++      R    
Sbjct: 250 PQCLG------IPVFGTDARVIDPETGEEL----PP-----GEEGEIVV------RGPQV 288

Query: 430 FNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDR 474
           F GY ++  +  +        G   F TGD+   D+  YF+F DR
Sbjct: 289 FKGYWNRPEATAESFI--ELDGKRFFRTGDLGYIDEEGYFFFLDR 331

The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430

>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins

 Score =  109 bits (276), Expect = 1e-26
 Identities = 69/272 (25%), Positives = 112/272 (41%), Gaps = 39/272 (14%)

Query: 214 IYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLL 273
           +YTSGTTG PK  ++TH   +  A++      L+  DV     PLYH AGGL  +     
Sbjct: 7   LYTSGTTGRPKGVMLTHRNLLANAVNALAGVDLSPGDVYLLAAPLYHAAGGLFLLPALAA 66

Query: 274 GGSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMIGNG- 332
           GG TVV+  KF          ++  T    +  M + LL +P+       S++++I    
Sbjct: 67  GG-TVVLMPKFDPEAVLDLIERHRVTHTFLVPTMFQRLLRLPDFARYDLSSLRLIIYGAA 125

Query: 333 -LRPQVWEPFQKRFGLDRICEFYGATEGNANLM-----NADGKVGAVGYIPYIAIPFYPV 386
            +  ++     + FG     + YG TE           +   K+G+VG      +P    
Sbjct: 126 PMPAELKRAMIEWFG-PVFVQGYGMTETGPTTTLLSPEDWLRKLGSVGR----PVPG--- 177

Query: 387 GLIKCDPETSEPIRNKDGLCIPCKAEEPG-ILIGMIKESRAESHFNGYADKKASEKKILR 445
             ++        I ++DG        E G I++      R  +   GY ++  +  + LR
Sbjct: 178 VEVR--------IVDEDGR--ELPPGEVGEIVV------RGPAVMAGYWNRPEATAEALR 221

Query: 446 NVYSHGDAAFNTGDILIKDKFQYFYFKDRTGD 477
           + + H      TGD+   D+  Y Y  DR  D
Sbjct: 222 DGWLH------TGDLGYLDEDGYLYIVDRKKD 247

Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342

>gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase)

 Score =  108 bits (272), Expect = 2e-25
 Identities = 104/429 (24%), Positives = 180/429 (41%), Gaps = 70/429 (16%)

Query: 69  TVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINT-- 125
           ++T+ ++++  NR  N  +  G++R + V L +   PE+   + G  KIG V   INT  
Sbjct: 30  SLTYGELQEEVNRWGNALRELGIERENRVLLILLDTPEFPTAFWGAIKIGAVPVPINTLL 89

Query: 126 --NQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPG----ISLYAAGTRRKPQAKV 179
             +  ++ L  S      + ++   EL E L       P     I +  AG         
Sbjct: 90  TPDDYRYYLNDS----RARVLVISEELWEVLKPALQKDPHLRHVIVVGGAG------PGA 139

Query: 180 LPSTTLLDEELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAIS 239
           L    L+     E+ A + + D       D   ++Y+SG+TG PK  V  H   +  A +
Sbjct: 140 LSYAQLIATAAEELEAAATSAD-------DMAFWLYSSGSTGRPKGVVHLHHDMLVTAEA 192

Query: 240 -GRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLL-----GGSTVVIRSKFSASNFWKDC 293
             +   G+T DDVV++   L+       G+G  L      G +TV++  + +    +   
Sbjct: 193 YAKNVLGITEDDVVFSAAKLFFA----YGLGNGLYFPLSVGATTVLMPERPTPDAVFATI 248

Query: 294 IKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRIC 351
            +Y  TV   +  +   +LA PEKPE    S+++ +  G  L  ++   +++ FGL+ I 
Sbjct: 249 ERYKPTVFFGVPTLYAAMLAAPEKPERDLSSLRLCVSAGEALPAEIGYRWKELFGLE-IL 307

Query: 352 EFYGATE-GNANLMNADGKV--GAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIP 408
           +  G+TE  +  L N  G V  G  G      +P Y V L+  D +  E           
Sbjct: 308 DGIGSTEMLHIFLSNRPGAVKYGTSGK----PVPGYEVKLV--DEDGEE----------- 350

Query: 409 CKAEEPGILIGMIKESRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQY 468
               E G L       R +S   GY +++   ++        G+    TGD   +D+  Y
Sbjct: 351 VADGEIGELW-----VRGDSSAAGYWNRREKTRETF-----VGE-WTRTGDKYYRDEDGY 399

Query: 469 FYFKDRTGD 477
           +++  R+ D
Sbjct: 400 YWYCGRSDD 408

Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506

>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated

 Score =  103 bits (259), Expect = 1e-23
 Identities = 111/442 (25%), Positives = 179/442 (40%), Gaps = 69/442 (15%)

Query: 66  YKYTVTF-QVEDHSNRIANFFKSK-GLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFI 123
           Y   +++ ++ + + R+A + + + G+++GD V L+M+  P++V  +  + +   V   +
Sbjct: 32  YGRAISYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAYYAILRANAVVVPV 91

Query: 124 NTNQRQHILIHSIKVAECKAIIYGAELSEAL--------------TEVKDSIP---GISL 166
           N   R+  L H +  +  +  I G+EL+  +               +  D +P    I++
Sbjct: 92  NPMNREEELAHYVTDSGARVAIVGSELAPKVAPAVGNLRLRHVIVAQYSDYLPAEPEIAV 151

Query: 167 YA-AGTRRKPQAKVLPSTTLLDEELPEVSAKSPTEDIKKNKPSDKLAYI-YTSGTTGLPK 224
            A        QA          E L    A  P          D LA + YTSGTTG+PK
Sbjct: 152 PAWLRAEPPLQALAPGGVVAWKEALAAGLAPPPHT-----AGPDDLAVLPYTSGTTGVPK 206

Query: 225 AAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKF 284
             + TH   M  A+     +  T + VV   LPL+H  G +  +   +  G+TVV+  + 
Sbjct: 207 GCMHTHRTVMANAVGSVLWSNSTPESVVLAVLPLFHVTGMVHSMNAPIYAGATVVLMPR- 265

Query: 285 SASNFWK-----DCI-KYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMIGNGLR-PQ- 336
                W        I +Y  T    I  M    LA P   E    S++ + G G   P+ 
Sbjct: 266 -----WDREAAARLIERYRVTHWTNIPTMVVDFLASPGLAERDLSSLRYIGGGGAAMPEA 320

Query: 337 VWEPFQKRFGLDRICEFYGATEGNA-NLMN--ADGKVGAVGYIPYIAIPFYPVGLIKCDP 393
           V E  ++  GLD   E YG TE  A    N     K+  +G      IP + V     DP
Sbjct: 321 VAERLKELTGLD-YVEGYGLTETMAQTHSNPPDRPKLQCLG------IPTFGVDARVIDP 373

Query: 394 ETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNGYADK-KASEKKILRNVYSHGD 452
           ET E         +P   E   I++           F GY ++ +A+ +     +   G 
Sbjct: 374 ETLEE--------LPP-GEVGEIVV------HGPQVFKGYWNRPEATAEAF---IEIDGK 415

Query: 453 AAFNTGDILIKDKFQYFYFKDR 474
             F TGD+   D+  YF+  DR
Sbjct: 416 RFFRTGDLGRMDEEGYFFITDR 437

Length = 546

>gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated

 Score =  103 bits (259), Expect = 1e-23
 Identities = 114/434 (26%), Positives = 166/434 (38%), Gaps = 70/434 (16%)

Query: 80  RIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVA 139
           R AN   S G+  GD VA  +   PE      G    G+    IN       +   ++ A
Sbjct: 70  RTANLLHSLGVGPGDVVAFLLPNLPETHFALWGGEAAGIANP-INPLLEPEQIAELLRAA 128

Query: 140 ECKAIIY-----GAELSEALTEVKDSIPGI----------------SLYAAGTRRKPQAK 178
             K ++      G ++ + + EV  ++P +                 L     RRK  A+
Sbjct: 129 GAKVLVTLGPFPGTDIWQKVAEVLAALPELRTVVEVDLARYLPGPKRLAVPLIRRKAHAR 188

Query: 179 VLPSTTLLDEELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAI 238
           +L     L  + P     S         P D  AY +T GTTG+PK A  TH   +  A 
Sbjct: 189 ILDFDAELARQ-PGDRLFSGR----PIGPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAW 243

Query: 239 SGRYQTGLTSDDVVYTTLPLYHTAGGLLGIG-QCLLGGSTVVI------RSKFSASNFWK 291
            G    GL   D V+  LPL+H    LL  G   L  G+ VV+      R     +NFWK
Sbjct: 244 LGALLLGLGPGDTVFCGLPLFHV-NALLVTGLAPLARGAHVVLATPQGYRGPGVIANFWK 302

Query: 292 DCIKYNCTVAQYIGEMCRY--LLAVPEKPEDTQHSVKMMIGNG--LRPQVWEPFQKRFGL 347
              +Y        G    Y  LL VP    D   S++  +     L  +V+  F+   G+
Sbjct: 303 IVERYRINF--LSGVPTVYAALLQVPVDGHDIS-SLRYALCGAAPLPVEVFRRFEAATGV 359

Query: 348 DRICEFYGATEGN-ANLMN-ADG--KVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKD 403
            RI E YG TE    + +N  DG  ++G+VG    + +P+  V ++  D           
Sbjct: 360 -RIVEGYGLTEATCVSSVNPPDGERRIGSVG----LRLPYQRVRVVILDDA--------G 406

Query: 404 GLCIPCKAEEPGILIGMIKESRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIK 463
                C  +E G+L          + F+GY +  A  K +        D   NTGD+   
Sbjct: 407 RYLRDCAVDEVGVLC-----IAGPNVFSGYLE-AAHNKGLW-----LEDGWLNTGDLGRI 455

Query: 464 DKFQYFYFKDRTGD 477
           D   YF+   R  D
Sbjct: 456 DADGYFWLTGRAKD 469

Length = 632

>gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis

 Score = 99.6 bits (249), Expect = 5e-23
 Identities = 78/284 (27%), Positives = 119/284 (41%), Gaps = 54/284 (19%)

Query: 207 PSDKLAYIYTSGTTGLPKAAVMTHVRAMFMA---ISGRYQTGLTSDDVVYTTLPLYHTAG 263
           P D    ++TSGTTG PK   +TH + +  +   I+  ++  LT  D     +PL+H  G
Sbjct: 1   PDDPALILHTSGTTGRPKGVPLTH-KNLLASARNIAKSHK--LTPSDRCLNVMPLFHIHG 57

Query: 264 GLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPE-KPEDTQ 322
            ++ +   LL G +VV   KFSAS FW D  KY  T    +  + + LL   +  P    
Sbjct: 58  LIVSLLATLLAGGSVVCPPKFSASKFWDDIAKYRVTWYSAVPTIHQILLKTAKPNPGKPP 117

Query: 323 HSVKMMIGNG---LRPQVWEPFQKRFGLDRICEFYGATE-----GNANLMNADGKVGAVG 374
             ++  I +    L P V +  +KRFG+  + E YG TE      +  L     K G+VG
Sbjct: 118 PRLR-FIRSASAPLPPAVLDRLEKRFGVP-VLEAYGMTEAAHQIASNPLPPLVRKPGSVG 175

Query: 375 YIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPG----ILIGMIKESRAESHF 430
                     P G           I + DG  +P     PG    I+I      R  +  
Sbjct: 176 ---------RPAG-------VEVAILDDDGRPLP-----PGQEGEIVI------RGPNVT 208

Query: 431 NGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDR 474
            GY +   + ++  R+ +      F TGD+   D+  Y +   R
Sbjct: 209 AGYLNNPEANREAFRDGW------FRTGDLGYLDEDGYLFLTGR 246

FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345

>gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated

 Score = 99.6 bits (249), Expect = 2e-22
 Identities = 72/262 (27%), Positives = 112/262 (42%), Gaps = 31/262 (11%)

Query: 69  TVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQ 127
            VT+ ++E  SNR+A+  ++ GL+ GD VA+ +E  PE+  ++    + G+    IN   
Sbjct: 11  VVTYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPINW-- 68

Query: 128 RQHILIHSIK--VAEC--KAIIYGAELSEALTEVKDSIP-GISLYAAGTRRKPQAKVLPS 182
             H+    I   V +   K +I  A L++   E+   +P G+ L          A  +P 
Sbjct: 69  --HLTAAEIAYIVDDSGAKVLIVSAALADTAAELAAELPAGVPLLLVV------AGPVPG 120

Query: 183 TTLLDEELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAV--MTHVR-----AMF 235
               +E L    A  P   I        +   Y+SGTTG PK     +  +       M 
Sbjct: 121 FRSYEEAL----AAQPDTPIADETAGADML--YSSGTTGRPKGIKRPLPGLDPDEAPGMM 174

Query: 236 MAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIK 295
           +A+ G +      D V  +  PLYHTA    G    L  G TVV+  KF A        +
Sbjct: 175 LALLG-FGMYGGPDSVYLSPAPLYHTAPLRFG-MSALALGGTVVVMEKFDAEEALALIER 232

Query: 296 YNCTVAQYIGEMCRYLLAVPEK 317
           Y  T +Q +  M   +L +PE+
Sbjct: 233 YRVTHSQLVPTMFVRMLKLPEE 254

Length = 502

>gnl|CDD|236121 PRK07868, PRK07868, acyl-CoA synthetase; Validated

 Score = 98.6 bits (246), Expect = 1e-21
 Identities = 71/268 (26%), Positives = 112/268 (41%), Gaps = 18/268 (6%)

Query: 211 LAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQ 270
           LA+I  S   G   A  +T+ R    A        L   D VY   PL+H +G L+ +G 
Sbjct: 608 LAFIAFSTAGGELVAKQITNYRWALSAFGTASAAALDRRDTVYCLTPLHHESGLLVSLGG 667

Query: 271 CLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMIG 330
            ++GGS + +        F ++  +Y  TV  Y   M R ++  P       H V++ IG
Sbjct: 668 AVVGGSRIALSRGLDPDRFVQEVRQYGVTVVSYTWAMLREVVDDPAFVLHGNHPVRLFIG 727

Query: 331 NGLRPQVWEPFQKRFGLDRICEFYGATEGNANLMNADG-KVGAVGY-IPYIAIPFYPVGL 388
           +G+   +WE   + F    + EF+  T+G A L N  G K+G+ G  +P        V L
Sbjct: 728 SGMPTGLWERVVEAFAPAHVVEFFATTDGQAVLANVSGAKIGSKGRPLPGAG----RVEL 783

Query: 389 IKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNGYADKKASEKKILRNVY 448
              DPE    + +  G     +  E G+L+             G  D  AS   + R V+
Sbjct: 784 AAYDPEHDLILEDDRGFVRRAEVNEVGVLLA---------RARGPIDPTAS---VKRGVF 831

Query: 449 SHGDAAFNTGDILIKDKFQYFYFKDRTG 476
           +  D   +T  +  +D    ++  DR G
Sbjct: 832 APADTWISTEYLFRRDDDGDYWLVDRRG 859

Length = 994

>gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS) of AAE_MA like

 Score = 97.5 bits (243), Expect = 1e-21
 Identities = 101/431 (23%), Positives = 168/431 (38%), Gaps = 67/431 (15%)

Query: 71  TFQ-VEDHSNRIANFFKSKGLQRGDAVALFMEGQPEY-VCMWLGLSKIGVVAAFINTNQR 128
           TF  ++D+SN+ ANFFK+ G+ +GD V L ++ + E+   M L L KIG +A        
Sbjct: 49  TFGDLKDYSNKAANFFKALGIGKGDTVMLTLKRRYEFWFSM-LALHKIGAIAIPATHMLT 107

Query: 129 QHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDE 188
              +++ I+ A  K I+   E       + ++ P     +          V       D+
Sbjct: 108 AKDIVYRIEAAGIKMIVCIGE-DGVPEHIDEAAP--ECGSPTLLVLVGDPVPEGWIDFDK 164

Query: 189 ELPEVSA--KSPT-EDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTG 245
           E+   S   + PT  D   N   D L   +TSGTTG+PK     H   +   ++ +Y   
Sbjct: 165 EIENASPDFERPTGNDATCND--DILLVYFTSGTTGMPKMVEHDHTYPLGHIVTAKYWQN 222

Query: 246 LTSDDVVYTTLPLYHTAGGLLGIGQCLLG--------GSTVVI--RSKFSASNFWKDCIK 295
           +    +  T            G G+ + G        G+ V +    KF   N  +   K
Sbjct: 223 VKEGGLHLTVADT--------GWGKAVWGKLYGQWIAGAAVFVYDYDKFDPKNLLEKIEK 274

Query: 296 YNCTVAQYIGEMCRYLLAVPEKPEDTQH----SVK--MMIGNGLRPQVWEPFQKRFGLDR 349
           Y  T       + R+L+      ED       S++     G  L P+V+  F+++ G+ +
Sbjct: 275 YGVTTFCAPPTIYRFLIK-----EDLSKYDLSSLRYCTTAGEPLNPEVFNTFKEKTGI-K 328

Query: 350 ICEFYGATEGN---ANLMNADGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLC 406
           + E +G TE     A     + K G++G       P Y + +I  DP+            
Sbjct: 329 LMEGFGQTETTLTIATFPWMEPKPGSMGK----PSPGYDIDII--DPDGK---------- 372

Query: 407 IPCKAEEPGILIGMIKESRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKF 466
             C+  E G ++    + +    F GY        ++  + Y H      TGD    D+ 
Sbjct: 373 -SCEVGEEGEIVIRTSDGKPLGLFMGYYRDPERTAEVWHDGYYH------TGDTAWMDED 425

Query: 467 QYFYFKDRTGD 477
            Y +F  R  D
Sbjct: 426 GYLWFVGRADD 436

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This family of MACS enzymes is found in archaea and bacteria. It is represented by the acyl-adenylating enzyme from Methanosarcina acetivorans (AAE_MA). AAE_MA is most active with propionate, butyrate, and the branched analogs: 2-methyl-propionate, butyrate, and pentanoate. The specific activity is weaker for smaller or larger acids. Length = 537

>gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated

 Score = 95.4 bits (238), Expect = 5e-21
 Identities = 67/299 (22%), Positives = 117/299 (39%), Gaps = 19/299 (6%)

Query: 69  TVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINT-- 125
            +T+ ++     R A    + G+ +GD VA++    P +V   LG  K G V   +NT  
Sbjct: 30  RLTYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVIAALGALKAGAVVVPLNTRY 89

Query: 126 --NQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPST 183
             ++  +IL       + KA+                +P +         +         
Sbjct: 90  TADEAAYILARG----DAKALFVLGLFLGVDYSATTRLPALEHVVICETEEDDPHTEKMK 145

Query: 184 TLLDEELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAIS--GR 241
           T    +   ++A  P E   +  P D    ++TSGTTG PK A++TH R +    +    
Sbjct: 146 TF--TDF--LAAGDPAERAPEVDPDDVADILFTSGTTGRPKGAMLTH-RQLLSNAADWAE 200

Query: 242 YQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVA 301
           Y  GLT  D      P +H  G   G+   L+ G+T++    F     ++       TV 
Sbjct: 201 Y-LGLTEGDRYLAANPFFHVFGYKAGVNAPLMRGATILPLPVFDPDEVFRLIETERITVL 259

Query: 302 QYIGEMCRYLLAVPEKPEDTQHSVKMMIGNG--LRPQVWEPFQKRFGLDRICEFYGATE 358
                M   LL  P++  +   S+++ +     +   + E F+   G+D +   YG +E
Sbjct: 260 PGPPTMYNSLLQHPDRSAEDLSSLRLAVTGAASMPVALLERFESELGVDIVLTGYGLSE 318

Length = 513

>gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

 Score = 94.3 bits (235), Expect = 2e-20
 Identities = 61/250 (24%), Positives = 89/250 (35%), Gaps = 30/250 (12%)

Query: 69  TVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYV-----CMWLGLSKIGVVAAF 122
            +T+ ++ +    +A+   S G+  GD VA+F   +PE+       + LG     V    
Sbjct: 45  AITYRELYERVRALASGLLSLGIPAGDRVAIFAANRPEWAIADLAILALG----AVSVPI 100

Query: 123 INTN---QRQHILIHSIKVAECKAIIYG--------AELSEALTEVKDSIPGISLYAAGT 171
            +T+   Q  +IL  S    E K I             + E   +V D I  I L     
Sbjct: 101 YSTSTPEQLAYILNES----ESKVIFVENQELLDLVLPVLEDCPKVVDLIVIIDLVREAV 156

Query: 172 RRKPQAKVLPSTTLLDEELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHV 231
               +A VL         L  + +      I   KP D    IYTSGTTG PK  ++TH 
Sbjct: 157 E--AKALVLEVFPDEGISLFLIDSAGLEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHR 214

Query: 232 RAMFMAIS-GRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFW 290
             +            +   D V + LPL H        G  L     V +  K       
Sbjct: 215 NLLAQVAGIDEVLPPIGPGDRVLSFLPLAHIFERAFEGG--LALYGGVTVLFKEDPRTLL 272

Query: 291 KDCIKYNCTV 300
           +D  +   TV
Sbjct: 273 EDLKEVRPTV 282

Length = 613

>gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 90.4 bits (225), Expect = 7e-20
 Identities = 78/283 (27%), Positives = 112/283 (39%), Gaps = 37/283 (13%)

Query: 207 PSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLL 266
           P D  AY +T GTTG PK A  +H   +  A      +GL   DV+   LPL+H  G ++
Sbjct: 1   PDDLAAYFHTGGTTGAPKLARHSHRNEVANAWMAALLSGLGPGDVLLNGLPLFHVGGAIV 60

Query: 267 GIGQCLLGGSTVVI------RSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPED 320
                L  G+TVV+      R+    +NFWK   +Y  T+   +  +   LL VP    D
Sbjct: 61  TGLAPLARGATVVLPTPSGFRNPAVVANFWKIVERYRVTLLSAVPTVLAALLQVPLGDAD 120

Query: 321 TQHSVKMMIGNG--LRPQVWEPFQKRFGLDRICEFYGATEGNA----NLMNADGKVGAVG 374
              S++  +     L  +V   F+   G+  + E YG TEG      N      + G+VG
Sbjct: 121 IS-SLRYALTGAAPLPVEVARRFEAVTGV-PVVEGYGMTEGTGVSAINPRGGPRRPGSVG 178

Query: 375 YIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNGYA 434
                 +P+  V + K D            L   C   E G+L       R  + F GY 
Sbjct: 179 L----RLPYTRVRVAKLDAG--------GALGRDCAPGEVGVLA-----IRGPNVFPGYL 221

Query: 435 DKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGD 477
           +   +     R      D   NTGD+   D   Y +   R  D
Sbjct: 222 N--DAHNAGARL----EDGWLNTGDLGRIDADGYLWLTGRAKD 258

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 359

>gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)

 Score = 91.9 bits (229), Expect = 7e-20
 Identities = 105/440 (23%), Positives = 173/440 (39%), Gaps = 89/440 (20%)

Query: 63  TGAYKYTVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAA 121
           TG     +T+ ++E    R+A    ++G ++GD V L      E+  ++L +   G V  
Sbjct: 29  TGR---ALTYAELERLVRRLAAGLAARGGRKGDVVLLLSPNSLEFPVVFLAVLSAGAVVT 85

Query: 122 FINTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLP 181
             N                    +Y    +E   +VKDS   +++  +    K  +  L 
Sbjct: 86  TANP-------------------LYTP--AEIAKQVKDSGAKLAITTSELAEKLASLALE 124

Query: 182 STTLLDEELPEVSAKS----------PTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHV 231
              LLD      +A            P   I   K  D  A  Y+SGTTG  K  ++TH 
Sbjct: 125 PVVLLDSADDGSAAIDDLLFADEPEPPVVVI---KQDDVAALPYSSGTTGRSKGVMLTH- 180

Query: 232 R---AMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLG-GSTVVIRSKFSAS 287
           R   A    +          +DV    LP++H   GL  I   LL  G+TVV+  +F   
Sbjct: 181 RNLIANVAQLVAGEGPNFDREDVTLCVLPMFHIY-GLTVILLALLRLGATVVVMPRFDLE 239

Query: 288 NFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQH---SVKMMIGNG---LRPQVWEPF 341
            F     KY  T    +  +   +LA+ + P   ++   S+K  IG+G   L  ++ E F
Sbjct: 240 KFLAAIEKYKVTHLPVVPPI---VLALVKHPIVDKYDLSSLK-QIGSGAAPLGKELAEAF 295

Query: 342 QKRFGLDRICEFYGATE----GNANLMNADG-KVGAVGYIPYIAIPFYPVGLIKCDPETS 396
           + RF    + + YG TE         +     K G+VG +    +P     ++  DPET 
Sbjct: 296 RARFPGVELGQGYGMTESSPVTTMCPVPEKDPKPGSVGRL----VPNVEAKIV--DPETG 349

Query: 397 EPI-RNKDG-LCIPCKAEEPGILIGMIKESRAESHFNGYADKKASEKKILRNVYSHGDAA 454
           E +  N+ G L +      P ++ G +             + +A+ + I ++ + H    
Sbjct: 350 ESLPPNQPGELWV----RGPQVMKGYLN------------NPEATAETIDKDGWLH---- 389

Query: 455 FNTGDILIKDKFQYFYFKDR 474
             TGD+   D+  Y +  DR
Sbjct: 390 --TGDLGYFDEDGYLFIVDR 407

4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504

>gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated

 Score = 91.5 bits (228), Expect = 8e-20
 Identities = 113/411 (27%), Positives = 167/411 (40%), Gaps = 86/411 (20%)

Query: 75  EDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIH 134
           +  S R+AN   + G++ GD VA+ +E  PE + ++L   + G V   +NT      L +
Sbjct: 35  DAASARLANLLVALGVKPGDRVAVQVEKSPEALALYLATLRAGAVFLPLNTAYTLAELDY 94

Query: 135 SIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEE----L 190
            I  AE   ++        L+++          AAG        V      LD +    L
Sbjct: 95  FIGDAEPALVVCDPANFAWLSKIAA--------AAGAPH-----VET----LDADGTGSL 137

Query: 191 PEVSAKSPTEDIKKNKPSDKLAYI-YTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSD 249
            E +A +P +     + +D LA I YTSGTTG  K A+++H   +  A++       T D
Sbjct: 138 LEAAAAAPDDFETVPRGADDLAAILYTSGTTGRSKGAMLSHGNLLSNALTLVDYWRFTPD 197

Query: 250 DVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCR 309
           DV+   LP++HT G  +     LL G++++   KF                   +  M R
Sbjct: 198 DVLIHALPIFHTHGLFVATNVALLAGASMIFLPKFDP--------------DAVLALMPR 243

Query: 310 --YLLAVP-------EKPEDTQHSVKMM--IGNG---LRPQVWEPFQKRFGLDRICEFYG 355
              ++ VP       ++P  T+ +   M    +G   L  +    FQ+R G   I E YG
Sbjct: 244 ATVMMGVPTFYTRLLQEPRLTREAAAHMRLFISGSAPLLAETHREFQERTG-HAILERYG 302

Query: 356 ATEGNANLMNA-DGK--VGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAE 412
            TE N N  N  DG+   G VG+      P   V L   DPET                 
Sbjct: 303 MTETNMNTSNPYDGERRAGTVGF------PLPGVSLRVTDPETGA----------ELPPG 346

Query: 413 EPGILIGMIKESRAESHFNGY---ADKKASEKKILRNVYSHGDAAFNTGDI 460
           E    IGMI E +  + F GY    +K A E    R      D  F TGD+
Sbjct: 347 E----IGMI-EVKGPNVFKGYWRMPEKTAEE---FRA-----DGFFITGDL 384

Length = 504

>gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated

 Score = 89.9 bits (224), Expect = 4e-19
 Identities = 83/340 (24%), Positives = 135/340 (39%), Gaps = 50/340 (14%)

Query: 69  TVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQ 127
            +T+ ++E+ +NR+A++  ++GL  GD V ++   + EYV   LG  K   V   +N N 
Sbjct: 28  RLTYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGAFKARAVP--VNVNY 85

Query: 128 R------QHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLY---AAGTRRKPQAK 178
           R      +++L  S    +  A++Y  E +  + EV   +P +        G+       
Sbjct: 86  RYVEDELRYLLDDS----DAVALVYEREFAPRVAEVLPRLPKLRTLVVVEDGSGNDLLPG 141

Query: 179 VLPSTTLLDEELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAI 238
            +       E+   ++A SP  D  +  P D L  +YT GTTG+PK  VM     +F  +
Sbjct: 142 AVD-----YEDA--LAAGSPERDFGERSPDD-LYLLYTGGTTGMPK-GVMWRQEDIFRVL 192

Query: 239 SG--RYQTG---LTSDDVV-----------YTTLPLYHTAGGLLGIGQCLLGGSTVVIRS 282
            G   + TG      +++            +   PL H A G       L  G TVV+  
Sbjct: 193 LGGRDFATGEPIEDEEELAKRAAAGPGMRRFPAPPLMHGA-GQWAAFAALFSGQTVVLLP 251

Query: 283 --KFSASNFWKDCIKYNCTVAQYIGE-MCRYLLAVPEKPEDTQHSVKMMIGNG---LRPQ 336
             +F A   W+   +    V   +G+ M R LL   E       S    I +G     P 
Sbjct: 252 DVRFDADEVWRTIEREKVNVITIVGDAMARPLLDALEARGPYDLSSLFAIASGGALFSPS 311

Query: 337 VWEPFQKRFGLDRICEFYGATEGNANL--MNADGKVGAVG 374
           V E   +      + +  G++E         A G V   G
Sbjct: 312 VKEALLELLPNVVLTDSIGSSETGFGGSGTVAKGAVHTGG 351

Length = 533

>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score = 88.2 bits (219), Expect = 8e-19
 Identities = 75/286 (26%), Positives = 108/286 (37%), Gaps = 49/286 (17%)

Query: 207 PSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLP---LYHTAG 263
             D     +TSGTTGLPK  + TH   +   ++G Y   L  DD+ +T            
Sbjct: 80  ADDPALLYFTSGTTGLPKMVLHTHSYPLGHLVTGAYWLDLRPDDLHWTIADPGWAKGAWS 139

Query: 264 GLLGIGQCLLGGSTVVIRS-KFSASNFWKDCIKYNCTVAQYIGEMC------RYLLAVPE 316
            L      LLG +  V    +F A    +   +Y  T        C      R LL    
Sbjct: 140 SLF--APWLLGAAVFVYHGRRFDAERTLELLERYGVTT------FCAPPTAYRMLLQQDL 191

Query: 317 KPEDTQH-SVKMMIGNGLRPQVWEPFQKRFGLDRICEFYGATEGNANLMNADG---KVGA 372
              D  H    +  G  L P+V + ++   GL  I + YG TE    + N  G   K G+
Sbjct: 192 SSYDFSHLRHVVSAGEPLNPEVIDWWRAATGLP-IRDGYGQTETGLLVANFPGMEVKPGS 250

Query: 373 VGYIPYIAIPFYPVGLIKCDPETSEPIRNKDG-LCIPCKAEEPGILIGMIKESRAESHFN 431
           +G       P Y V +I  D E +E    ++G + +  K   PG+             F 
Sbjct: 251 MGR----PAPGYRVAII--DDEGNELPPGEEGDIAVRVKPRPPGL-------------FR 291

Query: 432 GYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGD 477
           GY       +  +R  +      + TGD  IKD+  YF+F  R  D
Sbjct: 292 GYLKDPEKTEATIRGDW------YLTGDRAIKDEDGYFWFVGRADD 331

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430

>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS)

 Score = 87.3 bits (217), Expect = 1e-18
 Identities = 86/429 (20%), Positives = 147/429 (34%), Gaps = 121/429 (28%)

Query: 69  TVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQ 127
           ++T+ +++  S R+A    + GL  GD VA+      EYV ++L + + G VA  +N + 
Sbjct: 11  SLTYGELDARSGRLAKALLALGLLPGDRVAVLAPKSAEYVVLYLAIWRAGGVAVPLNPSY 70

Query: 128 RQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLD 187
               L + +  ++   ++  A               + +Y +GT                
Sbjct: 71  PAAELAYILSDSQPSLLVDPA---------------LIIYTSGT---------------- 99

Query: 188 EELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLT 247
                                           TG PK  V+TH      A +       T
Sbjct: 100 --------------------------------TGRPKGVVLTHGNLAANARALVEAWRWT 127

Query: 248 SDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEM 307
           + DV+   LPL+H  G    +   L  G++V    +F         +    TV       
Sbjct: 128 ASDVLLHALPLHHVHGLFNALHCPLWAGASVEFLPRFDPQERDALRLLPRITV------- 180

Query: 308 CRYLLAVP-------EKPEDTQHSVK-------MMIGNG-LRPQVWEPFQKRFGLDRICE 352
               + VP       E  E    +          + G+  L   V E +++R G   + E
Sbjct: 181 ---FMGVPTIYTRLLEHYEFDDAAAAAARNLRLFVSGSAALPVPVLERWEERTGH-TLLE 236

Query: 353 FYGATEGNANLMN---ADGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPC 409
            YG TE    L N    + + G VG      +P   V +   D +  EP+   +      
Sbjct: 237 RYGMTETGMALSNPLDGERRPGTVG------LPLPGVEVRIVDEDGGEPLAAGE------ 284

Query: 410 KAEEPGILIGMIKESRAESHFNGYADK-KASEKKILRNVYSHGDAAFNTGDILIKDKFQY 468
                   +G I + R  + F+ Y +K +A+ +          D  F TGD+ + D+  Y
Sbjct: 285 --------VGEI-QVRGPNVFSEYWNKPEATAEAF------TEDGWFKTGDVGVVDEDGY 329

Query: 469 FYFKDRTGD 477
           +    R  D
Sbjct: 330 YRILGRKSD 338

MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430

>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated

 Score = 87.7 bits (218), Expect = 2e-18
 Identities = 58/220 (26%), Positives = 91/220 (41%), Gaps = 20/220 (9%)

Query: 69  TVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQ 127
           + T+ +++   NR+A      GL++GD VA        Y  +WL  ++ G V   +N   
Sbjct: 36  SWTYAELDAAVNRVAAALLDLGLKKGDRVAALGHNSDAYALLWLACARAGAVHVPVNFML 95

Query: 128 R----QHILIHSIKVAECKAIIYGAELSEALTEVKDSIP--GISLYAAGTRRKPQAKVLP 181
                 +IL HS      +A +    L+         +P   + L      R+     L 
Sbjct: 96  TGEELAYILDHS----GARAFLVDPALAPTAEAALALLPVDTLILSLVLGGREAPGGWLD 151

Query: 182 STTLLDEELPEVSAKSPTEDIKKNKPSDKLAYI-YTSGTTGLPKAAVMTHVRAMFMAISG 240
                +      S   P  ++      D LA I YTSGT  LPK A++TH   +   +S 
Sbjct: 152 FADWAEAG----SVAEPDVEL----ADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSC 203

Query: 241 RYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVI 280
                +++DD+    LPLYH A   + +G  L  G+T VI
Sbjct: 204 IVAGDMSADDIPLHALPLYHCAQLDVFLGPYLYVGATNVI 243

Length = 523

>gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed

 Score = 87.5 bits (217), Expect = 2e-18
 Identities = 60/232 (25%), Positives = 105/232 (45%), Gaps = 23/232 (9%)

Query: 65  AYKYTVTFQVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFIN 124
           +Y Y+    ++  ++R+AN+  +KG++ GD VA  + G  E+  ++L   K+G V+  + 
Sbjct: 49  SYTYS---ALDHAASRLANWLLAKGIEPGDRVAFQLPGWCEFTIIYLACLKVGAVSVPLL 105

Query: 125 TNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTT 184
            + R+  L+  +    C+A ++ A      T   D I  +         + Q   L    
Sbjct: 106 PSWREAELVWVLNK--CQAKMFFAPTLFKQTRPVDLILPL---------QNQLPQLQQIV 154

Query: 185 LLDEELPEVSAKSPTEDIKKNKP--------SDKLAYI-YTSGTTGLPKAAVMTHVRAMF 235
            +D+  P  S+ S ++ I   +P         D+LA + +TSGT GLPK  ++TH   + 
Sbjct: 155 GVDKLAPATSSLSLSQIIADYEPLTTAITTHGDELAAVLFTSGTEGLPKGVMLTHNNILA 214

Query: 236 MAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSAS 287
              +   +  LT  DV     PL H  G L G+    L G+  V+   F+  
Sbjct: 215 SERAYCARLNLTWQDVFMMPAPLGHATGFLHGVTAPFLIGARSVLLDIFTPD 266

Length = 547

>gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated

 Score = 87.1 bits (216), Expect = 3e-18
 Identities = 58/210 (27%), Positives = 92/210 (43%), Gaps = 12/210 (5%)

Query: 73  QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHIL 132
           +++D    +A     +G+  GD V + M  + E+V   L  + +G +A  +N       +
Sbjct: 47  ELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESVLAANMLGAIAVPVNFRLTPPEI 106

Query: 133 IHSIKVAECKAIIYGAELSEALTEVKDSIPGISL-YAAGTRRKPQAKVLPSTTLLDEELP 191
              +       ++  A L+   T V+D +P +S    AG        VL    LL E  P
Sbjct: 107 AFLVSDCGAHVVVTEAALAPVATAVRDIVPLLSTVVVAGGS--SDDSVLGYEDLLAEAGP 164

Query: 192 EVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGL-TSDD 250
                    DI  + P+     +YTSGTTG PK AV+TH      A++     G   + D
Sbjct: 165 AH----APVDIPNDSPA---LIMYTSGTTGRPKGAVLTHANLTGQAMTCLRTNGADINSD 217

Query: 251 VVYTTLPLYHTAGGLLGIGQCLLGGSTVVI 280
           V +  +PL+H A G+  +   LL G+  VI
Sbjct: 218 VGFVGVPLFHIA-GIGSMLPGLLLGAPTVI 246

Length = 542

>gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 85.7 bits (213), Expect = 3e-18
 Identities = 72/281 (25%), Positives = 110/281 (39%), Gaps = 39/281 (13%)

Query: 207 PSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLL 266
           P D     YTSGTTG PK A++TH   +    S   + GLT  D     +PL+H  G +L
Sbjct: 1   PDDPALIQYTSGTTGRPKGAMLTHRNVLNNGYSIARRLGLTEGDRTLVPVPLFHVFGLVL 60

Query: 267 GIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVK 326
           G+   L  G+T+V+  KF      +   +   T    +  M   LL  P+  +    S++
Sbjct: 61  GVLASLTAGATLVLMEKFDPGAALRLIERERITALHGVPTMFIALLEHPDFDKFDLSSLR 120

Query: 327 -MMIGNGLRP-QVWEPFQKRFGLDRICEFYGATEGNANLMNADG------KVGAVGYIPY 378
             + G    P ++    ++ F +  I   YG TE +       G      + G VG    
Sbjct: 121 TGISGGAPVPPELVRRIREEFPMAEITTGYGMTETSGVGTQTSGDDPYEDRPGTVG---- 176

Query: 379 IAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPG-ILIGMIKESRAESHFNGY-ADK 436
             +P   V ++  DP+  E               E G I +      R  S   GY  D 
Sbjct: 177 RPLPGVEVKIV--DPDGGE-----------VPPGEVGEICV------RGYSVMKGYYNDP 217

Query: 437 KASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGD 477
           +A+ + I  + + H      TGD+   D+  Y     R  D
Sbjct: 218 EATAEAIDADGWLH------TGDLGYMDEDGYLRIVGRIKD 252

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347

>gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated

 Score = 86.9 bits (216), Expect = 3e-18
 Identities = 72/311 (23%), Positives = 125/311 (40%), Gaps = 46/311 (14%)

Query: 69  TVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTN- 126
           T+T+ ++++ SN +A    + G++ GD VA+       +V       K+G     +NT  
Sbjct: 74  TLTYAELDEQSNALARGLLALGVRAGDGVAVLARNHRGFVLALYAAGKVGARIILLNTGF 133

Query: 127 ---QRQHILIHSIKVAE---CKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVL 180
              Q         +VA     KA++Y  E ++ L+ +   +  +  +         +   
Sbjct: 134 SGPQLA-------EVAAREGVKALVYDDEFTDLLSALPPDLGRLRAWGGNPDDDEPS--- 183

Query: 181 PSTTLLDEELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVR-----AMF 235
            ST   DE L ++ A S T  + K      +  I TSGTTG PK A           A  
Sbjct: 184 GST---DETLDDLIAGSSTAPLPKPPKPGGIV-ILTSGTTGTPKGAPRPEPSPLAPLAGL 239

Query: 236 MAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLG---GSTVVIRSKFSASNFWKD 292
           ++     +    + +      P++H      G     L    GSTVV+R +F      +D
Sbjct: 240 LS-----RVPFRAGETTLLPAPMFHA----TGWAHLTLAMALGSTVVLRRRFDPEATLED 290

Query: 293 CIKYNCTVAQYIGEMCRYLLAVPEKPE---DTQHSVKMMI--GNGLRPQVWEPFQKRFGL 347
             K+  T    +  M   +L +  +     DT  S+K++   G+ L P++     + FG 
Sbjct: 291 IAKHKATALVVVPVMLSRILDLGPEVLAKYDTS-SLKIIFVSGSALSPELATRALEAFG- 348

Query: 348 DRICEFYGATE 358
             +   YG+TE
Sbjct: 349 PVLYNLYGSTE 359

Length = 549

>gnl|CDD|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score = 86.8 bits (215), Expect = 3e-18
 Identities = 104/417 (24%), Positives = 168/417 (40%), Gaps = 54/417 (12%)

Query: 76  DHSNRIANFF-KSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIH 134
             S + AN    + GLQRGD VA+ +   PE+  + +   + G+V            +++
Sbjct: 49  SLSRKAANVLSGACGLQRGDRVAVILPRVPEWWLVNVACIRTGLVFIPGTIQLTAKDILY 108

Query: 135 SIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLD-----EE 189
            ++ ++ K I+   EL+ A+  +    P +           + K+L S    D     +E
Sbjct: 109 RLQASKAKCIVTSDELAPAVDSIASECPSL-----------KTKLLVSEHSRDGWLNFKE 157

Query: 190 LPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMF-MAISGRYQTGLTS 248
           L  +   S      K K  + +A  +TSGTTG PK A  +H      + ++GRY   LT 
Sbjct: 158 L--LKEASTEHTCVKTKSQEPMAIYFTSGTTGFPKMAEHSHSSLGLGLKVNGRYWLDLTP 215

Query: 249 DDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRS--KFSASNFWKDCIKYNCTVAQYIGE 306
            D+++           +  +    + G+ V +    +F      +   KY  T       
Sbjct: 216 SDIMWNMSDTGWIKAAIWSLFSPWIQGACVFVHHLPRFDPKVILQTLSKYPITTFCSAPT 275

Query: 307 MCRYLLA---VPEKPEDTQHSVKMMIGNGLRPQVWEPFQKRFGLDRICEFYGATEGNANL 363
           + R L+       K +  +H V    G  L P+V E ++ + GLD + E YG TE     
Sbjct: 276 VYRMLVQQDLTSYKFKSLRHCVT--GGEPLNPEVLEQWKAQTGLD-LYEGYGQTETGLIC 332

Query: 364 MNADG---KVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGM 420
            N  G   K G++G     A P Y V +I           + +G  +P    E  I I  
Sbjct: 333 ANFKGMKIKPGSMGK----ASPPYDVQII-----------DDNGNVLP-PGTEGDIGI-R 375

Query: 421 IKESRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGD 477
           +K +R    F+ Y D        +R     GD  + TGD  I D+  YF+F  R  D
Sbjct: 376 VKPTRPFCLFSCYVDNPEKTAATIR-----GD-FYITGDRGIMDEDGYFWFVGRADD 426

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. MACS enzymes are localized to mitochondria. Two murine MACS family proteins are found in liver and kidney. In rodents, a MACS member is detected particularly in the olfactory epithelium and is called O-MACS. O-MACS demonstrates substrate preference for the fatty acid lengths of C6-C12. Length = 530

>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 85.8 bits (213), Expect = 7e-18
 Identities = 101/419 (24%), Positives = 169/419 (40%), Gaps = 71/419 (16%)

Query: 69  TVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQ 127
            VTF ++ +    +A    + G+++GD VAL M+   E + +   L ++G VA  +NT  
Sbjct: 27  KVTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHALQQLGAVAVLLNTRL 86

Query: 128 RQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLD 187
            +  L+  +  AE K +I   +    L                       K         
Sbjct: 87  SREELLWQLDDAEVKCLITDDDFEAKLIPGI-----------------SVKF-------- 121

Query: 188 EELPEVSAKSPTEDIKKNKPSDKLAYI-YTSGTTGLPKAAVMTHVRAMFMAISGRYQTGL 246
            EL     +     I++    D++A I YTSGTTG PK  + T+    + A+      GL
Sbjct: 122 AELMNGPKEEAE--IQEEFDLDEVATIMYTSGTTGKPKGVIQTYGNHWWSAVGSALNLGL 179

Query: 247 TSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQYIGE 306
           T DD     +P++H   GL  + + ++ G  VV+  KF A    K       T+   +  
Sbjct: 180 TEDDCWLAAVPIFHI-SGLSILMRSVIYGMRVVLVEKFDAEKINKLLQTGGVTIISVVST 238

Query: 307 MCRYLLAVPEKPEDTQH-SVK-MMIGNGLRPQVWEPFQKRFGLDRICEFYGATEGNANLM 364
           M + LL      E T   S + M++G G  P+      K  G+    + YG TE  + ++
Sbjct: 239 MLQRLLE--RLGEGTYPSSFRCMLLGGGPAPKPLLEQCKEKGIPVY-QSYGMTETASQIV 295

Query: 365 -----NADGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPG-ILI 418
                +A  K+G+ G       P +P  L          I  KDG  +     E G I++
Sbjct: 296 TLSPEDALTKLGSAGK------PLFPCEL---------KIE-KDG--VVVPPFEEGEIVV 337

Query: 419 GMIKESRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGD 477
                 +  +   GY +++ + ++  ++ +      F TGDI   D+  + Y  DR  D
Sbjct: 338 ------KGPNVTKGYLNREDATRETFQDGW------FKTGDIGYLDEEGFLYVLDRRSD 384

Length = 483

>gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated

 Score = 85.3 bits (211), Expect = 8e-18
 Identities = 69/337 (20%), Positives = 133/337 (39%), Gaps = 43/337 (12%)

Query: 73  QVEDHSNRIANFFKSK-GLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHI 131
           Q+ ++ +++A +   +  +++G+ +A+  +   EY+ +   ++K+  +A  +N    ++ 
Sbjct: 32  QLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFAIAKVECIAVPLNIRLTENE 91

Query: 132 LIHSIKVAECKAIIYGAELSEALTEVKDSI---PGISLYAAGTRRKPQAKVLPSTTLLDE 188
           LI  +K +    +            ++        IS+                      
Sbjct: 92  LIFQLKDSGTTVLFVEKTFQNMALSMQKVSYVQRVISI---------------------T 130

Query: 189 ELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTS 248
            L E+  +     ++KN+ S      YTSGTTG PK AV+T     + A++  +   LT 
Sbjct: 131 SLKEIEDRKIDNFVEKNE-SASFIICYTSGTTGKPKGAVLTQENMFWNALNNTFAIDLTM 189

Query: 249 DDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMC 308
            D     LPL+H  G  L     L  G  +++  KF  +       K+  TV   +  + 
Sbjct: 190 HDRSIVLLPLFHIGGIGLFAFPTLFAGGVIIVPRKFEPTKALSMIEKHKVTVVMGVPTIH 249

Query: 309 RYLLAVPEKPEDTQHSVKMMIGNGLRP---QVWEPFQKRFGLDRICEFYGATEGNANLM- 364
           + L+   +       SV+    NG  P   ++   F  R G     + +G TE +  +  
Sbjct: 250 QALINCSKFETTNLQSVRWFY-NGGAPCPEELMREFIDR-GF-LFGQGFGMTETSPTVFM 306

Query: 365 ----NADGKVGAVGYIPYIAIPFYPVGLIKCDPETSE 397
               +A  KVG++G      + F    LI  D   ++
Sbjct: 307 LSEEDARRKVGSIGK----PVLFCDYELI--DENKNK 337

Length = 496

>gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas)

 Score = 85.0 bits (211), Expect = 1e-17
 Identities = 99/403 (24%), Positives = 150/403 (37%), Gaps = 97/403 (24%)

Query: 109 MWLGLSKIGVVAAFINTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYA 168
             L L   G V   +N    +  L  + K A  K +I      E L      + G+ +  
Sbjct: 47  ANLALLLAGKVPVMLNFTAGEEGLRSACKQAGIKTVITSRAFLEKLK-----LEGLVVLL 101

Query: 169 AGTR-------RKPQAKVLPSTTLLDEELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTG 221
            G R       R   +K       L  +LP    +     +   KP D    ++TSG+ G
Sbjct: 102 EGVRIVYLEDLRAKISKADKLKAFLAAKLPPALLR---LFLAGAKPDDPAVILFTSGSEG 158

Query: 222 LPKAAVMTH------VRAMFMAISGRYQTGLTSDDVVYTTLPLYH----TAGGLLGIGQC 271
           LPK  V++H      +  +   I       L ++DV+   LPL+H    T   LL     
Sbjct: 159 LPKGVVLSHRNLLANIDQIAAVI------DLNTEDVLLGALPLFHAFGLTVTLLLP---- 208

Query: 272 LLGGSTVVIRSKFSASNFWKDC---IKYNCTVAQYIGEMCRYLLAVPE---------KPE 319
           LL G  VV     +  +  K       Y  T+          L   P           PE
Sbjct: 209 LLTGLRVVYY--PNPLDAKKIAELIRDYKATI----------LCGTPTFLRGYARNAHPE 256

Query: 320 DTQHSVKMMIGNG--LRPQVWEPFQKRFGLDRICEFYGATEGN----ANLMNADGKVGAV 373
           D   S+++++     L     E F+++FG+ RI E YGATE +     N    + K G V
Sbjct: 257 DFS-SLRLVVAGAEKLPEATRELFEEKFGI-RILEGYGATECSPVISVNTPMGN-KPGTV 313

Query: 374 GYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNGY 433
           G      +P   V ++   PET E               E G+L+      R  +  +GY
Sbjct: 314 G----RPLPGIEVRIV--SPETHE----------ELPIGEGGLLL-----VRGPNVMSGY 352

Query: 434 A--DKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDR 474
              ++K SE ++L      GD  ++TGDI   D+  +     R
Sbjct: 353 LNNEEKTSEVEVL------GDGWYDTGDIGKIDEDGFLTIVGR 389

Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489

>gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional

 Score = 85.1 bits (211), Expect = 1e-17
 Identities = 86/352 (24%), Positives = 129/352 (36%), Gaps = 92/352 (26%)

Query: 50  RPLFVRTIREVPMTGAYKYTVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEY-V 107
           +P  +        TG     VT+ ++++ SNR+A+ F+S GL+RGD VA+FME    Y  
Sbjct: 13  KPAVIM-----ASTGE---VVTYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLE 64

Query: 108 CMWLGLSKIGVV------------AAFINTNQRQHILIHSIKVAECKAIIYGAELSEALT 155
             W    + G+             AA+I  +     LI S    +         L +   
Sbjct: 65  VCWAAE-RSGLYYTCVNSHLTPAEAAYIVDDSGARALITSAAKLDV-----ARALLKQCP 118

Query: 156 EVK--------DSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTEDIKKNKP 207
            V+          + G   YA           LP+T + DE                   
Sbjct: 119 GVRHRLVLDGDGELEGFVGYAEAVAG------LPATPIADE------------------- 153

Query: 208 SDKLAYIYTSGTTGLPKAAV-------MTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYH 260
           S     +Y+SGTTG PK                +   +   +  G  SD V  +  PLYH
Sbjct: 154 SLGTDMLYSSGTTGRPKGIKRPLPEQPPDTPLPLTAFLQRLW--GFRSDMVYLSPAPLYH 211

Query: 261 TA-GGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPE 319
           +A    + +   L  G TV++   F A  +     +Y  T  Q +  M   +L +PE+  
Sbjct: 212 SAPQRAVMLVIRL--GGTVIVMEHFDAEQYLALIEEYGVTHTQLVPTMFSRMLKLPEEVR 269

Query: 320 DTQ--HSVKMMIGNG--LRPQV-------WEPFQKRFGLDRICEFYGATEGN 360
           D     S+++ I       PQV       W P         I E+Y ATEG 
Sbjct: 270 DKYDLSSLEVAIHAAAPCPPQVKEQMIDWWGPI--------IHEYYAATEGL 313

Length = 511

>gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family

 Score = 83.4 bits (206), Expect = 4e-17
 Identities = 73/332 (21%), Positives = 137/332 (41%), Gaps = 37/332 (11%)

Query: 73  QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINT----NQR 128
           ++E    R+    +  G++R + V L M    ++   +LG  + G+V   +NT    +  
Sbjct: 35  ELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIAFLGAIRAGIVPVALNTLLTADDY 94

Query: 129 QHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDE 188
            ++L  S      + +    EL   +       P +       R +     L        
Sbjct: 95  AYMLEDS----RARVVFVSGELLPVIKAALGKSPHLEHRVVVGRPEAGEVQLAE------ 144

Query: 189 ELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMA-ISGRYQTGLT 247
               ++ +S        +  D   ++Y+SG+TG+PK  V TH    + A +  R   G+ 
Sbjct: 145 ---LLATESEQFKPAATQADDPAFWLYSSGSTGMPKGVVHTHSNPYWTAELYARNTLGIR 201

Query: 248 SDDVVYTTLPLYHTAGGLLGIGQCL-----LGGSTVVIRSKFSASNFWKDCIKYNCTVAQ 302
            DDVV++   L+       G+G  L     +G +TV++  + +    +    ++  T+  
Sbjct: 202 EDDVVFSAAKLFFA----YGLGNALTFPMSVGATTVLMGERPTPDAVFDRLRRHQPTIFY 257

Query: 303 YIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFYGATE-G 359
            +  +   +LA P  P + Q  +++    G  L  +V + +Q RFG+D I +  G+TE  
Sbjct: 258 GVPTLYAAMLADPNLPAEDQVRLRLCTSAGEALPAEVGQRWQARFGVD-IVDGIGSTEML 316

Query: 360 NANLMNADGKV--GAVGYIPYIAIPFYPVGLI 389
           +  L N  G V  G  G      +P Y + L+
Sbjct: 317 HIFLSNLPGDVRYGTSGK----PVPGYRLRLV 344

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. Length = 508

>gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase

 Score = 82.9 bits (205), Expect = 4e-17
 Identities = 53/218 (24%), Positives = 85/218 (38%), Gaps = 32/218 (14%)

Query: 71  TFQVED-HSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQ 129
           T+Q  D  +  +A   K++G++ G  VAL  +   E V +      +G   A +NT   +
Sbjct: 1   TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTE 60

Query: 130 HILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAG-TRRKPQAKVLPSTTLLDE 188
           +                     E   +++D    + L  +    +  QA  L        
Sbjct: 61  N---------------------ERTNQLEDLDVQLLLTDSLLEEKDFQADSLDRIEAAGR 99

Query: 189 ELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTS 248
               +SA    + I           ++TSGTTG PKA   T       A+  +   G T 
Sbjct: 100 YETSLSASFNMDQIA--------TLMFTSGTTGKPKAVPHTFRNHYASAVGSKENLGFTE 151

Query: 249 DDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSA 286
           DD    +LPLYH   GL  + + L+ G+T+ I  KF+ 
Sbjct: 152 DDNWLLSLPLYHI-SGLSILFRWLIEGATLRIVDKFNQ 188

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436

>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated

 Score = 83.2 bits (206), Expect = 6e-17
 Identities = 60/249 (24%), Positives = 110/249 (44%), Gaps = 18/249 (7%)

Query: 58  REVPMTGA---YKYTVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGL 113
           RE P   A   Y + +T+ ++++ S+R A   + +G+  GD VA+F+   P++  ++ G+
Sbjct: 44  RERPQRPAIIFYGHVITYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQFHIVFFGI 103

Query: 114 SKIGVVAAFINTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAG-TR 172
            K+G V   ++   R+H L + +  A  + ++   +L+  + +V+       +       
Sbjct: 104 LKLGAVHVPVSPLFREHELSYELNDAGAEVLLALDQLAPVVEQVRAETSLRHVIVTSLAD 163

Query: 173 RKPQAKVLPSTTLLDEELPEVSA--------KSPTEDIKKNKPS-DKLAYI-YTSGTTGL 222
             P    LP    L       +         ++ T  +    P+ D LA + YT GTTG+
Sbjct: 164 VLPAEPTLPLPDSLRAPRLAAAGAIDLLPALRACTAPVPLPPPALDALAALNYTGGTTGM 223

Query: 223 PKAAVMTHVRAMF--MAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVI 280
           PK    T  R M    A +         D V  + LP +  AG   G+   L  G+T+V+
Sbjct: 224 PKGCEHTQ-RDMVYTAAAAYAVAVVGGEDSVFLSFLPEFWIAGENFGLLFPLFSGATLVL 282

Query: 281 RSKFSASNF 289
            +++ A  F
Sbjct: 283 LARWDAVAF 291

Length = 567

>gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 81.1 bits (201), Expect = 8e-17
 Identities = 69/279 (24%), Positives = 104/279 (37%), Gaps = 32/279 (11%)

Query: 207 PSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLL 266
             D  A IYTSG+TG PK  +++H      A S      LT DD +   LP      GL 
Sbjct: 1   DDDLAAIIYTSGSTGEPKGVMLSHRNLTAGARSIAQYLELTEDDRILAVLPFSFDY-GLS 59

Query: 267 GIGQCLLGGSTVVIRSKFS-ASNFWKDCIKYNCTVAQYIGEMCRYLL-AVPEKPEDTQHS 324
            +      G T+V+ S+F+   +  K   K   T    +      LL   P   ED   S
Sbjct: 60  QLLTAFRVGGTLVLESRFAFPRDVLKHLAKERITGFAGVPTTWAQLLRLDPLAREDFP-S 118

Query: 325 VKMMI--GNGLRPQVWEPFQKRFGLDRICEFYGATEGNA----NLMNADGKVGAVGYIPY 378
           ++ +   G  L  +     ++ F   ++   YG TE            D +  ++G    
Sbjct: 119 LRYLTNAGGALPAKTILQLRRAFPDAKLFSMYGLTEAFRSTYLPPEELDRRPDSIG---- 174

Query: 379 IAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNGYADKKA 438
            AIP                + ++DG    C   E G L+      R  +   GY +   
Sbjct: 175 KAIPN-----------VELWVVDEDGN--RCAPGEVGELV-----HRGANVMKGYWNDPE 216

Query: 439 SEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGD 477
           +  + LR     G+    TGD++  D+  Y YF  R  D
Sbjct: 217 ATAERLRPGPLPGEIVLYTGDLVRMDEEGYLYFVGRKDD 255

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350

>gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase

 Score = 81.1 bits (201), Expect = 2e-16
 Identities = 72/299 (24%), Positives = 113/299 (37%), Gaps = 56/299 (18%)

Query: 70  VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQR 128
           +T+ +++   +R+A    + G+  GD V + +    E+V ++  L K+G +        R
Sbjct: 41  LTYRELDAAVDRLAAGLLALGIGPGDRVLVQLPNVAEFVILYFALFKLGAIPVLALPAHR 100

Query: 129 QHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDE 188
            H + H  + +E KA I           + D   G   YAA  R             L E
Sbjct: 101 AHEIGHFARQSEAKAYI-----------IADRFSGFD-YAALARE------------LLE 136

Query: 189 ELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMA-ISGRYQTGLT 247
           ELP+V                   +  + GTTGLPK    TH   ++ A  S     GL 
Sbjct: 137 ELPDV-----------------ALFQLSGGTTGLPKLIPRTHNDYLYSARASAEA-CGLD 178

Query: 248 SDDVVYTTLPLYHTA----GGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQY 303
              V    LP  H       GLLG    LL G TVV+    S    +    +   T    
Sbjct: 179 PGTVYLAVLPAAHNFTLSSPGLLG---ALLAGGTVVLHHPPSPDVAFPLIEREKVTHTAL 235

Query: 304 IGEMCRYLLAVPEKPEDTQHSVKMMIGNG---LRPQVWEPFQKRFGLDRICEFYGATEG 359
           +  +    L   E  +    S++ +I  G   L P++    ++R G   + + +G  EG
Sbjct: 236 VPALLNLWLEAAEWDQADLSSLR-VIQVGGAPLSPELARRVEERLGC-PLQQVFGMAEG 292

2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483

>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase)

 Score = 80.7 bits (200), Expect = 2e-16
 Identities = 66/294 (22%), Positives = 115/294 (39%), Gaps = 54/294 (18%)

Query: 69  TVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQ 127
            +T+ +++D ++R+A      G++ GD VA  +    E+V ++L  ++IG V   I    
Sbjct: 1   RLTYGELDDAADRLAAALAELGVRPGDVVAFQLPNWWEFVVVYLACARIGAVINPIVPIY 60

Query: 128 RQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLD 187
           R+  L   ++ A  + +                +P       G                 
Sbjct: 61  RERELGFILRQARARVLF---------------VPD---EFRGFDY-------------- 88

Query: 188 EELPEVSAKSPTEDIKKNKPSDKLAYI-YTSGTTGLPKAAVMTHVRAMFMAISGRYQTGL 246
             +P                 D +A + YTSGTTG PK  + TH   +    S   + GL
Sbjct: 89  AAMP-----------------DDVALLLYTSGTTGEPKGVMHTHNTLLAEVRSYVERLGL 131

Query: 247 TSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQYIGE 306
           T DDVV    PL H  G L G+   LL G+TVV++ ++  +   +   ++  T       
Sbjct: 132 TPDDVVLMPSPLAHITGFLYGLELPLLLGATVVLQDRWDPARALELIREHGVTFTMGATP 191

Query: 307 MCRYLLAVPEKPEDTQHSVKMMIGNG--LRPQVWEPFQKRFGLDRICEFYGATE 358
               LLA  +       S+++ +  G  +  ++     +  G  ++   YG TE
Sbjct: 192 FLADLLAAADAAGPDLPSLRVFLCGGAPVPRELARRAAEALGA-KVVRAYGMTE 244

Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437

>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes

 Score = 79.3 bits (196), Expect = 6e-16
 Identities = 86/425 (20%), Positives = 142/425 (33%), Gaps = 104/425 (24%)

Query: 65  AYKYTVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFI 123
             + ++T+ ++ D +NR AN  ++ G+  GD V L +   PE V  +L   K G VA  +
Sbjct: 6   CGEQSLTYRELHDLANRFANVLRALGVSPGDRVLLLLPDSPELVAAFLACLKAGAVAVAL 65

Query: 124 NTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPST 183
           N       L H +  +    ++  A+                LY +GT            
Sbjct: 66  NPLLTPQDLEHILDDSGAALLVTEAD-----------DIAYWLYTSGT------------ 102

Query: 184 TLLDEELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMA-ISGRY 242
                                               TG PK  +  H   +  A    R 
Sbjct: 103 ------------------------------------TGKPKGVMHRHRDPLTFAEAFARE 126

Query: 243 QTGLTSDDVVYTTLPLYHTAGGLLGIGQCLL-----GGSTVVIRSKFSASNFWKDCIKYN 297
             GL   D ++++  L+       G+G  LL     G S V++    +         ++ 
Sbjct: 127 LLGLQPGDRIFSSSKLFFA----YGLGNSLLFPLFSGASAVLLPGWPTPEAVLDLLARHR 182

Query: 298 CTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFYG 355
            TV   +  + R LL           SV++ +  G  L   + E + +  G++ I +  G
Sbjct: 183 PTVLFGVPALYRALLESGAGSAPLFRSVRLCVSAGEALPAGLAERWAEATGIE-ILDGIG 241

Query: 356 ATE-GNANLMNADGKV--GAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAE 412
           +TE  +  + N  G    G  G      +P Y   L   D           G  +P  A 
Sbjct: 242 STEVLHIFISNRPGAARPGTTGR----PVPGYEARL--VDE---------SGREVP--AG 284

Query: 413 EPGILIGMIKESRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFK 472
             G L       R  S   GY +     ++ LR      D    TGD   +D   ++ ++
Sbjct: 285 TVGDLW-----VRGPSLAPGYWNLPEKTQRTLR------DGWLRTGDRFSRDADGWYRYQ 333

Query: 473 DRTGD 477
            R  D
Sbjct: 334 GRADD 338

This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436

>gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase

 Score = 78.9 bits (195), Expect = 1e-15
 Identities = 74/300 (24%), Positives = 133/300 (44%), Gaps = 33/300 (11%)

Query: 73  QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHIL 132
            VE  S R+A      G+++GD V L +   PE+V  +LG S+ G V    N       +
Sbjct: 55  DVELLSRRVAAGLHKLGIRQGDVVMLLLPNCPEFVLAFLGASRRGAVTTTANPFYTPAEI 114

Query: 133 IHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLL---DEE 189
               K +  K II  +   + L  + +   G+++        P    L  + L    + E
Sbjct: 115 AKQAKASGAKLIITQSCYVDKLKGLAED-DGVTVVTIDD---PPEGCLHFSELTQADENE 170

Query: 190 LPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRY-----QT 244
           LPEV             P D +A  Y+SGTTGLPK  ++TH + +  +++ +        
Sbjct: 171 LPEVEI----------SPDDVVALPYSSGTTGLPKGVMLTH-KGLVTSVAQQVDGENPNL 219

Query: 245 GLTSDDVVYTTLPLYHTAGGLLGIGQC-LLGGSTVVIRSKFSASNFWKDCIKYNCTVAQY 303
              SDDV+   LP++H    L  +  C L  G+ ++I  KF      +   ++  T+A +
Sbjct: 220 YFHSDDVILCVLPMFHIY-SLNSVLLCGLRVGAAILIMPKFEIGALLELIQRHKVTIAPF 278

Query: 304 IGEMCRYLLAVPEKPEDTQH---SVKMMIGNG--LRPQVWEPFQKRFGLDRICEFYGATE 358
           +  +   +LA+ + P   ++   S++M++     L  ++ + F+ +     + + YG TE
Sbjct: 279 VPPI---VLAIAKSPVVEKYDLSSIRMVLSGAAPLGKELEDAFRAKLPNAVLGQGYGMTE 335

Length = 537

>gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional

 Score = 78.7 bits (194), Expect = 1e-15
 Identities = 55/228 (24%), Positives = 93/228 (40%), Gaps = 24/228 (10%)

Query: 73  QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHIL 132
           Q+ D  +R+A    + G+Q GD V ++     E++      ++IG +   IN   R   L
Sbjct: 50  QLADAVDRLARGLLALGVQPGDRVGIWAPNCAEWLLTQFATARIGAILVNINPAYRASEL 109

Query: 133 IHSIKVAECKAIIYGAEL--SEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEEL 190
            +++  +  + +I       S+    +++ +PG++    G     +   L     L    
Sbjct: 110 EYALGQSGVRWVICADAFKTSDYHAMLQELLPGLAEGQPGALACERLPELRGVVSLAPAP 169

Query: 191 PE--------------VSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHV----R 232
           P               VS ++  E        D +   YTSGTTG PK A ++H      
Sbjct: 170 PPGFLAWHELQARGETVSREALAERQASLDRDDPINIQYTSGTTGFPKGATLSHHNILNN 229

Query: 233 AMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVI 280
             F+A S     GLT  D +   +PLYH  G +L    C+  G+ +V 
Sbjct: 230 GYFVAES----LGLTEHDRLCVPVPLYHCFGMVLANLGCMTVGACLVY 273

Length = 558

>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)

 Score = 78.4 bits (194), Expect = 2e-15
 Identities = 53/224 (23%), Positives = 86/224 (38%), Gaps = 38/224 (16%)

Query: 69  TVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFIN--T 125
           T+T+ +++  +  IA   ++ G   GD V L      ++V  + G    G +A       
Sbjct: 23  TLTYAELDRRARAIAARLQALG-APGDRVLLLAPPGLDFVAAFFGCLYAGAIAVPAPPPR 81

Query: 126 NQRQHI--LIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPST 183
              +H+  L   +  A  +A++  + +  AL             AA              
Sbjct: 82  RLGRHLARLAAILADAGARAVLTTSAVLAALRA---------ALAAPAALLLLLIAADDL 132

Query: 184 TLLDEELPEVSAKSPTEDIKKNKPSDKLAYI-YTSGTTGLPKAAVMTH------VRAMFM 236
             L           P +          +A++ YTSG+TG PK  ++TH      +RA+  
Sbjct: 133 AALAAADWRPPPPDPDD----------IAFLQYTSGSTGAPKGVMVTHGNLLANLRAI-- 180

Query: 237 AISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVI 280
                   GL  DDV  + LPLYH  G + G+ Q L  G  VV+
Sbjct: 181 ----ARAFGLDPDDVGVSWLPLYHDMGLIGGLLQPLYAGFPVVL 220

FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547

>gnl|CDD|213305 cd05939, hsFATP4_like, Fatty acid transport proteins (FATP), including FATP4 and FATP1, and similar proteins

 Score = 76.7 bits (189), Expect = 5e-15
 Identities = 30/60 (50%), Positives = 41/60 (68%)

Query: 12  QIPNVEGKAGMAAIVDTENSLDLKQLISGMQKTLPTYARPLFVRTIREVPMTGAYKYTVT 71
           ++P VEG+AGMAAIVD E  +DL +  + + K+LP YARP F+R + EV  TG +K   T
Sbjct: 406 EVPGVEGRAGMAAIVDPERKVDLDRFSAVLAKSLPPYARPQFIRLLPEVDKTGTFKLQKT 465

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes FATP4, FATP1, and homologous proteins. Each FATP has unique patterns of tissue distribution. FATP4 is mainly expressed in the brain, testis, colon and kidney. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 474

>gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 75.9 bits (187), Expect = 7e-15
 Identities = 90/424 (21%), Positives = 153/424 (36%), Gaps = 106/424 (25%)

Query: 73  QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHIL 132
           ++ + S R+AN     G++ GD VA  +   PE V   L   ++G +   + T      +
Sbjct: 5   ELREQSARVANLLADLGVKPGDRVAGLLPRTPELVVAILATWRVGAIYVPLFTAFGPKAI 64

Query: 133 IHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPE 192
            + +  +  K ++  A     L +                                    
Sbjct: 65  EYRLGHSGAKVVVTNAANRGKLDD------------------------------------ 88

Query: 193 VSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAM-----FMAISGRYQTGLT 247
                           D  A +YTSGTTGLPK  V   + A+     +M    RY   L 
Sbjct: 89  ----------------DLFAQMYTSGTTGLPK-GVPVPLNALAAFYAYM----RYAIDLR 127

Query: 248 SDDVVYTT------LPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVA 301
            DDV +          LY+   G L      +G +TV +   F+A N +    +   T  
Sbjct: 128 DDDVFWNIADPGWAYGLYYAITGPL-----AMGITTVFLEGGFTAENTYDVLERLGVTNF 182

Query: 302 QYIGEMCRYLLAVP-EKPEDTQHSVKMM--IGNGLRPQVWEPFQKRFGLDRICEFYGATE 358
                  R L+A   +     +  +++    G  L P+V   FQ   G+  I + YG TE
Sbjct: 183 AGSPTAYRMLMAAGADAAARIKLKLRVASSAGEPLNPEVVRWFQANLGV-TIHDHYGQTE 241

Query: 359 -----GNANLMNADGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEE 413
                GN + +  + + G++G    + +P Y + ++  D +                  E
Sbjct: 242 TGMPVGNHHALAHEVRAGSMG----LPLPGYRIAVLDDDGQPLAD-------------GE 284

Query: 414 PGILIGMIKESRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKD 473
           PG L   +  S     F+GY D      +++   +      + TGD++ +D+  YF+F  
Sbjct: 285 PGQLAIDVASSPL-LWFSGYWDDPEKTAELIAGRW------YVTGDLVERDEDGYFWFIG 337

Query: 474 RTGD 477
           R  D
Sbjct: 338 RADD 341

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440

>gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain

 Score = 72.7 bits (179), Expect = 8e-14
 Identities = 71/310 (22%), Positives = 121/310 (39%), Gaps = 63/310 (20%)

Query: 73  QVEDHSNRIANFFKS-KGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAF--INTNQ-- 127
           ++++ +NR+A   ++  G+  GD VA+ +E   E V   L + K G  AA+  ++     
Sbjct: 4   ELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAG--AAYVPLDPAYPA 61

Query: 128 --RQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTL 185
                IL    + A  + ++  + L+  L  +   +                 +L     
Sbjct: 62  ERLAFIL----EDAGARLLLTDSALASRLAGLVLPV-----------------ILLDPLE 100

Query: 186 LDEELPEVSAKSPTEDIKKNKPSDKLAY-IYTSGTTGLPKAAVMTH--VRAMFMAISGRY 242
           L       +   P          D LAY IYTSG+TG PK  V+TH  +  +   ++ RY
Sbjct: 101 LAALDDAPAPPPPDAPSG----PDDLAYVIYTSGSTGRPKGVVVTHRSLVNLLAWLARRY 156

Query: 243 QTGLTSDDVVYTTLPLYHTAGG--LLGIGQCLLGGSTVVI------RSKFSASNFWKDCI 294
             GL  DD V     L   A    + G    LL G+T+V+      R   +         
Sbjct: 157 --GLDPDDRVLQFASLSFDASVEEIFG---ALLAGATLVVPPEDEERDDAALLAALIA-- 209

Query: 295 KYNCTVAQ---YIGEMCRYLLAVPEKPEDTQHSVKMMIGNG--LRPQVWEPFQKRFGLDR 349
           ++  TV      +  +     A+P        S++++I  G  L P + + ++ R    R
Sbjct: 210 EHPVTVLNLTPSLLALL--AAALPPALA----SLRLVILGGEALTPALVDRWRARGPGAR 263

Query: 350 ICEFYGATEG 359
           +   YG TE 
Sbjct: 264 LINLYGPTET 273

This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409

>gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 73.4 bits (180), Expect = 9e-14
 Identities = 64/298 (21%), Positives = 106/298 (35%), Gaps = 41/298 (13%)

Query: 73  QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHIL 132
           +++  +NR+A    S G+  G+ VA+  +   E V   L + K G     ++       L
Sbjct: 257 ELDARANRLARLLISLGVGPGETVAILADRSLELVVALLAVLKAGAAYVPLDPLYPAERL 316

Query: 133 IHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPE 192
            + ++ +    ++  A L          +PG++                    LD+ L E
Sbjct: 317 AYILEDSRPTLLLTQAHLRVDD----VGLPGLA--------------------LDDALSE 352

Query: 193 VSAKSPTEDIKKNKPSDKLAY-IYTSGTTGLPKAAVMTHVRAM--FMAISGRYQTGLTSD 249
           +    P          D LAY IYTSG+TG PK   + H            R+  GL +D
Sbjct: 353 IPDTDPIPQA---LLGDALAYIIYTSGSTGQPKGVRIEHRALANLLNDAGARF--GLDAD 407

Query: 250 DVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSK---FSASNFWKDCIKYNCTVAQYIGE 306
           D V     L   A     I   LL G+ +V+         +   +       TV   +  
Sbjct: 408 DRVLALASLSFDASV-FEIFGALLEGARLVLAPALLQVDPAALLELLEAQGITVLLLVPL 466

Query: 307 MCRYLLAVPEKPEDTQH--SVKMMI--GNGLRPQVWEPFQKRFGLDRICE-FYGATEG 359
           + R LL     P+       ++ ++  G  L   + +   +   L R     YG TE 
Sbjct: 467 LLRLLLLAALAPDLISPCERLRQLLSGGEALPLALVQRLLQLAALARRLLNLYGPTEA 524

Length = 642

>gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)

 Score = 72.2 bits (177), Expect = 1e-13
 Identities = 81/399 (20%), Positives = 142/399 (35%), Gaps = 60/399 (15%)

Query: 80  RIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVA 139
            +A    ++G++    VA+      + V   L L ++G V A +N           +K A
Sbjct: 40  GVAARLHARGVRPQQRVAVVAPNSVDAVIALLALHRLGAVPALMNPR---------LKPA 90

Query: 140 ECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPT 199
           E   +I   E++ A+           +  A  +     +VL    L+    PE +     
Sbjct: 91  EIAELIKRGEMTAAVI-----AVDAQVMDAIFQSGSGVRVLALGDLVGLGEPESAGPPIE 145

Query: 200 EDIKKNKPSDKLAYIYTSGTTGLPKAAVMTH----VRAMFMAISGRYQTGLTSDDVVYTT 255
           +     +P       YTSGTTGLPK AV+       R +FM+     + G    +VV   
Sbjct: 146 D--PPREPEQPAFVFYTSGTTGLPKGAVIPQRAAESRVLFMSTQAGLRHG--RHNVVLGL 201

Query: 256 LPLYHTAG--GLLGIGQCLLGGSTVVIRSKFSASNF--WKDCIKYNCTVAQ--YIGEMCR 309
           +PLYH  G   +L +    L G+ VV+   F  ++     +  +     A   ++  +  
Sbjct: 202 MPLYHVIGFFAVL-VAALALDGTYVVVEE-FDPADALKLIEQERVTSLFATPTHLDALAA 259

Query: 310 YLLAVPEKPEDTQHSVKMMIGNGLRPQVWEPFQKRFGLDRICEFYGATEGNANLMNADGK 369
                P K +  +H   +       P        +         YG TE   +L   D +
Sbjct: 260 AAEGAPLKLDSLEH---VTFAGATMPDAVLERVNQHLPGEKVNIYGTTEAMNSLYMRDPR 316

Query: 370 VGAV---GYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRA 426
            G     G+  +  +    +G                         E G L+     + A
Sbjct: 317 TGTEMRPGF--FSEVRIVRIG---------------GSPDEALPNGEEGELV----VAAA 355

Query: 427 ESHFNGYADK-KASEKKILRNVYSHGDAAF--NTGDILI 462
           ++ F GY ++ +A+ +K+    Y   D A    +G + I
Sbjct: 356 DATFTGYLNQPQATAEKLQDGWYRTSDVAVVDPSGTVRI 394

CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495

>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated

 Score = 71.8 bits (177), Expect = 2e-13
 Identities = 66/242 (27%), Positives = 97/242 (40%), Gaps = 58/242 (23%)

Query: 76  DHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHS 135
           +  + +A    + G+++GD V ++    PE+V      +KIG +   IN   R   L ++
Sbjct: 51  EEVDALAKGLLALGIEKGDRVGIWAPNVPEWVLTQFATAKIGAILVTINPAYRLSELEYA 110

Query: 136 IKVAECKAII---------YGAELSEALTEVKDSIPGISLYAA-----------GTRRKP 175
           +  + CKA+I         Y A L E   E+    PG  L +A           G  + P
Sbjct: 111 LNQSGCKALIAADGFKDSDYVAMLYELAPELATCEPG-QLQSARLPELRRVIFLGDEKHP 169

Query: 176 -----QAKVLPSTTLLDEELPEVSAK-SPTEDIKKNKPSDKLAYI-YTSGTTGLPKAAVM 228
                   +     + D EL    A   P + I  N        I YTSGTTG PK A +
Sbjct: 170 GMLNFDELLALGRAVDDAELAARQATLDPDDPI--N--------IQYTSGTTGFPKGATL 219

Query: 229 THV----------RAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTV 278
           TH            AM           LT +D +   +PLYH  G +LG   C+  G+T+
Sbjct: 220 THRNILNNGYFIGEAM----------KLTEEDRLCIPVPLYHCFGMVLGNLACVTHGATM 269

Query: 279 VI 280
           V 
Sbjct: 270 VY 271

Length = 559

>gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated

 Score = 71.4 bits (175), Expect = 3e-13
 Identities = 51/223 (22%), Positives = 84/223 (37%), Gaps = 18/223 (8%)

Query: 51  PLFVRTIREVPMTGAYKY---TVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEY 106
            L       +P   A  +   T+T+  + +    +A+  +  GL RG+ VA++++ + E 
Sbjct: 4   HLLEDAAARLPDATALVHHDRTLTYAALSERVLALASGLRGLGLARGERVAIYLDKRLET 63

Query: 107 VCMWLGLSKIGVVAAFIN----TNQRQHILIHSIKVAECKA--IIYGAELSEALTEVKDS 160
           V    G +  G V   IN      Q  HIL      A+C    ++  +E  + L      
Sbjct: 64  VTAMFGAALAGGVFVPINPLLKAEQVAHIL------ADCNVRLLVTSSERLDLLHPALPG 117

Query: 161 IPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTT 220
              +            ++  P         P++ A    +       SD  A +YTSG+T
Sbjct: 118 CHDLRTLIIVGDPAHASEGHPGEEPAS--WPKLLALGDADPPHPVIDSDMAAILYTSGST 175

Query: 221 GLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAG 263
           G PK  V++H   +  A S         DD +   LPL    G
Sbjct: 176 GRPKGVVLSHRNLVAGAQSVATYLENRPDDRLLAVLPLSFDYG 218

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517

>gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated

 Score = 70.7 bits (174), Expect = 6e-13
 Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 1/58 (1%)

Query: 12  QIPNVEGKAGMAAIV-DTENSLDLKQLISGMQKTLPTYARPLFVRTIREVPMTGAYKY 68
           ++P  +G+AGMAAIV       DL  L + + + LP YA PLFVR + E+  TG +KY
Sbjct: 496 EVPGTDGRAGMAAIVLADGAEFDLAALAAHLYERLPAYAVPLFVRLVPELETTGTFKY 553

Length = 600

>gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes

 Score = 70.0 bits (172), Expect = 7e-13
 Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 1/58 (1%)

Query: 12  QIPNVEGKAGMAAIVDTEN-SLDLKQLISGMQKTLPTYARPLFVRTIREVPMTGAYKY 68
           ++P  EG+AGMAA+      + D +   + + + LP YARPLF+R    +  TG +KY
Sbjct: 375 EVPGTEGRAGMAALTLAPGAAFDPQAFAAHLDEQLPAYARPLFLRVQAAMETTGTFKY 432

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444

>gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional

 Score = 70.3 bits (172), Expect = 7e-13
 Identities = 83/299 (27%), Positives = 124/299 (41%), Gaps = 57/299 (19%)

Query: 198 PTEDIKKNKPSDKLAYI-YTSGTTGLPKAAVMTH---VRAM-----FMAISGRYQTGLTS 248
           PT  I+     D +A++ YT GTTG+ K A++TH   V  M     ++A +G+ + G   
Sbjct: 201 PTLQIE----PDDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQWLAGTGKLEEG--- 253

Query: 249 DDVVYTTLPLYH----TAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQYI 304
            +VV T LPLYH    TA GL+ +    +GG   +I +      F K+  K   T    +
Sbjct: 254 CEVVITALPLYHIFALTANGLVFMK---IGGCNHLISNPRDMPGFVKELKKTRFTAFTGV 310

Query: 305 GEMCRYLLAVPEKPEDTQHSVKMMIGNGLRPQ--VWEPFQKRFGLDRICEFYGATEGNA- 361
             +   LL  P   +    S+KM +G G+  Q  V E +++  GL  + E YG TE +  
Sbjct: 311 NTLFNGLLNTPGFDQIDFSSLKMTLGGGMAVQRSVAERWKQVTGLTLV-EAYGLTETSPA 369

Query: 362 ---NLMNADGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILI 418
              N +      G++G    + IP      IK D  T   I     LCI           
Sbjct: 370 ACINPLTLKEYNGSIG----LPIPSTDA-CIKDDAGTVLAIGEIGELCI----------- 413

Query: 419 GMIKESRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGD 477
                 +      GY  +     K++       D   +TGDI   D+  + Y  DR  D
Sbjct: 414 ------KGPQVMKGYWKRPEETAKVM-----DADGWLHTGDIARMDEQGFVYIVDRKKD 461

Length = 560

>gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score = 70.3 bits (173), Expect = 7e-13
 Identities = 48/196 (24%), Positives = 79/196 (40%), Gaps = 17/196 (8%)

Query: 73  QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFIN----TNQR 128
                  R+AN  +S G++ GD VA        ++ ++  +  +G V   +N      Q 
Sbjct: 30  DFYRRVRRLANALESLGVKPGDRVATLAWNTHRHLELYFAVPGMGAVLHTLNPRLSPEQI 89

Query: 129 QHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDE 188
            +I+ H    AE K I    +    L  +   +P +               LP      E
Sbjct: 90  AYIINH----AEDKVIFVDDDFLPLLEAIAPRLPTVKAVVVYDDADMPETSLP-NVYAYE 144

Query: 189 ELPEVSAKSPTEDIKKNKPSDKLAYI-YTSGTTGLPKAAVMTHVRAMF---MAISGRYQT 244
           EL  +  +SP  +       +  A + YTSGTTG PK  V +H R++    +A +     
Sbjct: 145 EL--LEEESPEYEWP-ELDENTAAGLCYTSGTTGNPKGVVYSH-RSLVLHTLASALPDSL 200

Query: 245 GLTSDDVVYTTLPLYH 260
           GL+  D V   +P++H
Sbjct: 201 GLSESDTVLPVVPMFH 216

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517

>gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional

 Score = 68.8 bits (169), Expect = 2e-12
 Identities = 73/255 (28%), Positives = 104/255 (40%), Gaps = 52/255 (20%)

Query: 69  TVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPE-YVCMWLGLSKIGVVA-----A 121
             T+ ++++ SN+ AN  K  G+++GD V +FM   PE Y  + LG  K G +      A
Sbjct: 73  KYTYKELKELSNKFANVLKELGVEKGDRVFIFMPRIPELYFAL-LGALKNGAIVGPLFEA 131

Query: 122 FINTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLP 181
           F+    R  +       +E K +I         T         +L      RKP    LP
Sbjct: 132 FMEEAVRDRLED-----SEAKVLI--------TTP--------ALL----ERKPADD-LP 165

Query: 182 S--TTLL---DEELPE--------VSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVM 228
           S    LL   D E           +   S   DI+     D     YTSG+TG PK  + 
Sbjct: 166 SLKHVLLVGEDVEEGPGTLDFNALMEQASDEFDIEWTDREDGAILHYTSGSTGKPKGVLH 225

Query: 229 THVRAMFMA-ISGRYQTGLTSDDVVYTTL-PLYHTAGGLLGIGQCLLGGST-VVIRSKFS 285
            H  AM     +G+Y   L  DDV + T  P + T G   GI    L G+T V+   +FS
Sbjct: 226 VH-NAMLQHYQTGKYVLDLHEDDVYWCTADPGWVT-GTSYGIFAPWLNGATNVIDGGRFS 283

Query: 286 ASNFWKDCIKYNCTV 300
              +++    Y  TV
Sbjct: 284 PERWYRILEDYKVTV 298

Length = 570

>gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated

 Score = 68.4 bits (167), Expect = 3e-12
 Identities = 70/285 (24%), Positives = 107/285 (37%), Gaps = 32/285 (11%)

Query: 89  GLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVAECKAIIYGA 148
           GL  GD VAL M    E+V   L  S+  +V   ++          ++ +AE +     A
Sbjct: 64  GLLPGDRVALRMGSNAEFVVALLAASRADLVVVPLDP---------ALPIAEQRVRSQAA 114

Query: 149 ELSEALTEVKDSIPGISLYAAGTRRK-PQAKVLPSTTLLDEELPEV---SAKSPTEDIKK 204
                L +      G    A  T R  P    +   +        V   +A  PT     
Sbjct: 115 GARVVLIDAD----GPHDRAEPTTRWWPLTVNVGGDSGPSGGTLSVHLDAATEPTPATST 170

Query: 205 N---KPSDKLAYIYTSGTTGLPKAAVMTH--VRAMFMAISGRYQTGLTSDDVVYTTLPLY 259
               +P D +  ++T GTTGLPK    TH  + +   AI   Y+  L+  D     +PLY
Sbjct: 171 PEGLRPDDAMI-MFTGGTTGLPKMVPWTHANIASSVRAIITGYR--LSPRDATVAVMPLY 227

Query: 260 HTAGGLLGIGQCLLGGSTVVI--RSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVP-- 315
           H  G +  +   L  G  V++  R +FSA  FW D      T    +  + + LL     
Sbjct: 228 HGHGLIAALLATLASGGAVLLPARGRFSAHTFWDDIKAVGATWYTAVPTIHQILLERAAT 287

Query: 316 EKPEDTQHSVKMM--IGNGLRPQVWEPFQKRFGLDRICEFYGATE 358
           E       +++ +      L  +  +  Q  F    +C F G TE
Sbjct: 288 EPSGRKPAALRFIRSCSAPLTAETAQALQTEFAAPVVCAF-GMTE 331

Length = 534

>gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated

 Score = 68.2 bits (167), Expect = 3e-12
 Identities = 60/257 (23%), Positives = 102/257 (39%), Gaps = 39/257 (15%)

Query: 49  ARPLFVRTI-REVPMTGAYKYTVTFQVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYV 107
           ARP  V  I  + P++ A       ++    +R+A +  ++G++RGD VA+++    E+V
Sbjct: 22  ARPDAVALIDEDRPLSRA-------ELRALVDRLAAWLAAQGVRRGDRVAVWLPNCIEWV 74

Query: 108 CMWLGLSKIGVVAAFINTNQRQHILIHSIKVAECKAIIY-----GAELSEALTEVKDS-- 160
            ++L  +++G     +NT  R H + H +     + ++      G + +  L  V     
Sbjct: 75  VLFLACARLGATVIAVNTRYRSHEVAHILGRGRARWLVVWPGFKGIDFAAILAAVPPDAL 134

Query: 161 --IPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTEDIKKNKPSDKLAYIY-TS 217
             +  I++        P         L     P      P    ++    D  A ++ TS
Sbjct: 135 PPLRAIAVVDDAADATPAPAPGARVQLFALPDPA----PPAAAGERAADPDAGALLFTTS 190

Query: 218 GTTGLPK------AAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAG--GLLGIG 269
           GTT  PK      A ++ H RA+  A       G     V+   LP     G   LLG  
Sbjct: 191 GTTSGPKLVLHRQATLLRHARAIARAY------GYDPGAVLLAALPFCGVFGFSTLLG-- 242

Query: 270 QCLLGGSTVVIRSKFSA 286
             L GG+ +V    F A
Sbjct: 243 -ALAGGAPLVCEPVFDA 258

Length = 540

>gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases

 Score = 67.6 bits (166), Expect = 4e-12
 Identities = 28/76 (36%), Positives = 36/76 (47%)

Query: 205 NKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGG 264
           +KP D    IYTSGTTG PK  ++TH   +  A +      L+  D V + LPL H    
Sbjct: 85  DKPDDLATLIYTSGTTGNPKGVMLTHRNLLAQAAALLEVIPLSPGDRVLSFLPLAHVFEQ 144

Query: 265 LLGIGQCLLGGSTVVI 280
            LG    L  G+ V  
Sbjct: 145 RLGEYLPLSSGARVNF 160

This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456

>gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)

 Score = 67.6 bits (166), Expect = 5e-12
 Identities = 49/222 (22%), Positives = 83/222 (37%), Gaps = 51/222 (22%)

Query: 64  GAYKYTVTFQVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFI 123
           G Y++    +VE+ +  I +  ++ GL+ GD + +F E +PE++          +V   +
Sbjct: 1   GPYEWISYKEVEERALNIGSGLRALGLKPGDKIGIFAENRPEWIITEQACFSQSLVIVPL 60

Query: 124 NTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPST 183
                +  + + +   E   +              D++   S                  
Sbjct: 61  YDTLGEEAIEYILNETEISIVFC------------DAVKVYSF----------------- 91

Query: 184 TLLDEELPEVSAKSPTEDIKKNKPSDKLAYI-YTSGTTGLPKAAVMTHVRAMFMAISGRY 242
               EEL E+  K+        KP D LA I YTSGTTG PK  ++TH   +   ++G  
Sbjct: 92  ----EELEELGKKNKVPPTPP-KPED-LATIMYTSGTTGNPKGVMLTH-GNIVAGVAGIN 144

Query: 243 QT---GLTSDDVVYTTLPLYH-----------TAGGLLGIGQ 270
           +     +   DV  + LPL H             GG +G   
Sbjct: 145 KIVPEFIGPTDVYISYLPLAHIFERVVENVCLYIGGRIGYYS 186

The members of this family are eukaryotic fatty acid CoA synthetases that activate fatty acids with chain lengths of 12 to 20. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Organisms tend to have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Length = 539

>gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase

 Score = 67.3 bits (165), Expect = 6e-12
 Identities = 54/211 (25%), Positives = 88/211 (41%), Gaps = 19/211 (9%)

Query: 73  QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFI----NTNQR 128
           QV D + RIA   +S GL+ GD +A+  +   E++   L +   G V+  +         
Sbjct: 11  QVADQARRIAAALQSLGLEPGDRIAILSKNCAEWIIADLAIWMAGHVSVPLYPTLTAETI 70

Query: 129 QHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDE 188
           +++L HS    + KA+  G    +    +K  +P                   ST     
Sbjct: 71  RYVLEHS----DAKALFVGK--LDDWDAMKAGVPEGLP--------TIILFPYSTLKDHY 116

Query: 189 ELPEVSAK-SPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLT 247
           +  ++ A   P +     +P D    +YTSGTTG PK  +++     F A       GLT
Sbjct: 117 KWDDLLAATEPLQGRPLPEPEDLATIVYTSGTTGQPKGVMLSFGAFAFAAQGTIEIIGLT 176

Query: 248 SDDVVYTTLPLYHTAGGLLGIGQCLLGGSTV 278
            +D + + LPL H A  ++  G  L  G+ V
Sbjct: 177 PNDRLLSYLPLAHIAERVIVEGGSLYSGAEV 207

The members of this family are bacterial long-chain fatty acid CoA synthetase. Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase in this family is involved in the synthesis of isoprenoid wax ester storage compounds when grown on phytol as the sole carbon source. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 504

>gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated

 Score = 66.6 bits (163), Expect = 9e-12
 Identities = 114/445 (25%), Positives = 178/445 (40%), Gaps = 72/445 (16%)

Query: 69  TVTF-QVEDHSNRIANFFKSK-GLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTN 126
            +TF ++E+ S   A + ++  GL++GD VAL M    +Y     G+ + G++   +N  
Sbjct: 48  VMTFRKLEERSRAFAAYLQNGLGLKKGDRVALMMPNLLQYPIALFGILRAGMIVVNVNPL 107

Query: 127 QRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIP---------GISLYAA-GT----- 171
                L H +  +  KAI+  +  +  L +V    P         G  L  A GT     
Sbjct: 108 YTPRELEHQLNDSGAKAIVIVSNFAHTLEKVVFKTPVKHVILTRMGDQLSTAKGTLVNFV 167

Query: 172 -----RRKPQAKVLPSTTLLDEELPEVSAKSPTEDIKKNKPSDKLAYI-YTSGTTGLPKA 225
                R  P+   LP        L         + +K     + LA++ YT GTTG+ K 
Sbjct: 168 VKYIKRLVPKYH-LPDAISFRSAL---HKGRRMQYVKPELVPEDLAFLQYTGGTTGVAKG 223

Query: 226 AVMTH--VRAMFMAISGRYQTGLTS-DDVVYTTLPLYH----TAGGLLGIGQCLLGGSTV 278
           A++TH  + A        Y   L    ++V T LPLYH    T   LL I    LGG  +
Sbjct: 224 AMLTHRNMLANLEQAKAAYGPLLHPGKELVVTALPLYHIFALTVNCLLFIE---LGGQNL 280

Query: 279 VIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMIGNGLRPQ-- 336
           +I +      F K+  KY  T    +  +   LL   E  E    S+K+ +G G+  Q  
Sbjct: 281 LITNPRDIPGFVKELKKYPFTAITGVNTLFNALLNNEEFQELDFSSLKLSVGGGMAVQQA 340

Query: 337 VWEPFQKRFGLDRICEFYGATEGN----ANLMNADGKVGAVGYIPYIAIPFYPVGLIKCD 392
           V E + K  G   + E YG TE +     N  + D   G++G          PV      
Sbjct: 341 VAERWVKLTG-QYLLEGYGLTECSPLVSVNPYDLDYYSGSIG---------LPV------ 384

Query: 393 PETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNGYADKKASEKKILRNVYSHGD 452
           P T   + + DG  +P    EPG L       +      GY  +  +  +++++ +    
Sbjct: 385 PSTEIKLVDDDGNEVP--PGEPGELWV-----KGPQVMLGYWQRPEATDEVIKDGWLA-- 435

Query: 453 AAFNTGDILIKDKFQYFYFKDRTGD 477
               TGDI + D+  +    DR  D
Sbjct: 436 ----TGDIAVMDEEGFLRIVDRKKD 456

Length = 560

>gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated

 Score = 64.9 bits (158), Expect = 3e-11
 Identities = 97/414 (23%), Positives = 155/414 (37%), Gaps = 75/414 (18%)

Query: 82  ANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFIN----TNQRQHILIHSIK 137
           A    ++G+ +GD VAL M+    ++ +    S +G V   IN     ++  +IL  +  
Sbjct: 41  AGMLHARGIGQGDVVALLMKNSAAFLELAFAASYLGAVFLPINYRLAADEVAYILGDA-- 98

Query: 138 VAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLL---DEELPEVS 194
                    GA+L   + E  D+I  +           QA     +  L     E+P  +
Sbjct: 99  ---------GAKLL-LVDEEFDAIVALETPKIVIDAAAQA----DSRRLAQGGLEIPPQA 144

Query: 195 AKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYT 254
           A +PT         D +  +YTSGTT  PK  + ++    + +I      GLT+ + +  
Sbjct: 145 AVAPT---------DLVRLMYTSGTTDRPKGVMHSYGNLHWKSIDHVIALGLTASERLLV 195

Query: 255 TLPLYHT-AGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLA 313
             PLYH  A  L GI    +GG T+ I  +F          ++  T A     M   +L 
Sbjct: 196 VGPLYHVGAFDLPGIAVLWVGG-TLRIHREFDPEAVLAAIERHRLTCAWMAPVMLSRVLT 254

Query: 314 VPEKPEDTQHSVKMMIGNGLRP--QVWEPFQKRFGLDRICEFYGATE--GNANLMNAD-- 367
           VP++      S+   IG G +        F + F   R  + YG TE      LM A   
Sbjct: 255 VPDRDRFDLDSLAWCIGGGEKTPESRIRDFTRVFTRARYIDAYGLTETCSGDTLMEAGRE 314

Query: 368 -GKVGAVGY-IPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIK--E 423
             K+G+ G  + ++ I       I        P   K  +C+      P +  G  K  E
Sbjct: 315 IEKIGSTGRALAHVEIR------IADGAGRWLPPNMKGEICM----RGPKVTKGYWKDPE 364

Query: 424 SRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGD 477
             AE+ +  +                     F +GD+   D+  + Y  DR  D
Sbjct: 365 KTAEAFYGDW---------------------FRSGDVGYLDEEGFLYLTDRKKD 397

Length = 497

>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis

 Score = 64.6 bits (158), Expect = 4e-11
 Identities = 51/199 (25%), Positives = 74/199 (37%), Gaps = 18/199 (9%)

Query: 73  QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINT----NQR 128
           +  D   R+A+     G+ +GD VA+     P  +    G+   G V   +NT    +  
Sbjct: 34  ETYDRCRRLASALSKLGIGKGDVVAVLAPNTPAMLEAHFGVPMAGAVLVPLNTRLDADDI 93

Query: 129 QHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYA-AGTRRKPQAKVLPSTTLLD 187
             IL HS    E K +    E      E    +    +         P A+         
Sbjct: 94  AFILNHS----EAKVLFVDQEFLSLAEEALALLSTKEIIDTEIIVISPAAEDSEEGDY-- 147

Query: 188 EELPEVSAKSPTEDIKKNKPSDKLAYI---YTSGTTGLPKAAVMTHVRAMFMAISGRYQT 244
           E+L  ++   P        P D+   I   YTSGTTG PK  V TH  A   A+    + 
Sbjct: 148 EDL--LAGGDPDPLPIP--PDDEWDPISLNYTSGTTGNPKGVVYTHRGAYLNALGNVIEW 203

Query: 245 GLTSDDVVYTTLPLYHTAG 263
           G+    V   TLP++H  G
Sbjct: 204 GMPDRPVYLWTLPMFHCNG 222

This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520

>gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 62.8 bits (153), Expect = 1e-10
 Identities = 97/431 (22%), Positives = 149/431 (34%), Gaps = 139/431 (32%)

Query: 78  SNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIK 137
           SNR+ANF +  G++RGD V L +   PE     L   K+G V     T            
Sbjct: 10  SNRVANFLRKHGVRRGDRVLLMLPNVPELWEAMLAAIKLGAVVIPATTL----------- 58

Query: 138 VAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKS 197
                       L+ A  +++D           +R KP+A V   T              
Sbjct: 59  ------------LTPA--DLRDRF---------SRGKPKAIVADET-------------- 81

Query: 198 PTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLP 257
                   +  D +   +TSGTTGLPK  + THV      +S  Y  GL   D+      
Sbjct: 82  --------RADDPILLYFTSGTTGLPKLVLHTHVSYPVGHLSTMYWIGLQPGDI------ 127

Query: 258 LYH---TAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTV----------AQYI 304
             H   ++ G                 +K + S+F+        TV           +Y+
Sbjct: 128 --HLNISSPGW----------------AKHAWSSFFAPWNA-GATVFGINYPRFDARRYL 168

Query: 305 GEMCRY----LLAVP--------EKPEDTQHSVKMMIGNG--LRPQVWEPFQKRFGLDRI 350
           G + ++      A P        +        ++  +  G  L P+V E  +K +GL  I
Sbjct: 169 GALEKFGVTTFCAPPTVWRMFIQQDLAQYDVRLREAVSAGEPLNPEVIERVKKAWGLT-I 227

Query: 351 CEFYGATEGNANLMNADG---KVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDG-LC 406
            + YG TE  A + N+ G   K G++G      +P Y V L+  D E  + I   +G + 
Sbjct: 228 RDGYGQTETTAMIGNSPGQKVKPGSMGR----PLPGYRVVLL--DDE-GKEIPVTEGEIA 280

Query: 407 IPCKAEEPGILIGMIKESRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKF 466
           +       G+               GY           R  Y      + TGD   +D+ 
Sbjct: 281 LDLGDRPIGL-------------MLGYMGDPEKTAAAFRGGY------YRTGDKAYRDED 321

Query: 467 QYFYFKDRTGD 477
            Y +F  R  D
Sbjct: 322 GYLWFVGRADD 332

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 433

>gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated

 Score = 61.6 bits (149), Expect = 4e-10
 Identities = 103/435 (23%), Positives = 173/435 (39%), Gaps = 56/435 (12%)

Query: 70  VTFQV-EDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFIN---T 125
           +TF V  D   R AN+ +  G+++GD VA+ +   P+ V  + G    G +    N   T
Sbjct: 50  ITFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGYYGTLLAGGIVVQTNPLYT 109

Query: 126 NQRQHILIHS--IKVAECKAIIYGAELS-EALTEVKDSI----------PGISLYAAGTR 172
            +     +H    KV  C  +++    + ++ T+++  I          P   LY    +
Sbjct: 110 ERELEYQLHDSGAKVILCLDLVFPRVTNVQSATKIEHVIVTRIADFLPFPKNLLYPFVQK 169

Query: 173 RKPQAKVLPSTTLLDEELPEVSAKSPTEDIKKNKPSDKLAYI-YTSGTTGLPKAAVMTH- 230
           ++    V  S +        V  +  T       P + LA + YT GTTG PK  ++TH 
Sbjct: 170 KQSNLVVKVSESETIHLWNSVEKEVNTGVEVPCDPENDLALLQYTGGTTGFPKGVMLTHK 229

Query: 231 --VRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASN 288
             V    M +   Y      ++VV   LP +H  G    +   ++ G  +V+  KF    
Sbjct: 230 NLVSNTLMGVQWLYNC-KEGEEVVLGVLPFFHVYGMTAVMNLSIMQGYKMVLIPKFDMKM 288

Query: 289 FWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI-GNGLRP-QVWEPFQKRFG 346
            ++   K+  T+      +   LL  P   E    S++  I G+   P +V E F+   G
Sbjct: 289 VFEAIKKHKVTLFPGAPTIYIALLNSPLLKEYDISSIRACISGSAPLPVEVQEKFETVTG 348

Query: 347 LDRICEFYGATEGN----ANLMNADGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNK 402
             ++ E YG TE +    +N +      G++G      +P+     +    ET E +   
Sbjct: 349 -GKLVEGYGLTESSPVTHSNFLWEKRVPGSIG------VPWPDTEAMIMSLETGEALP-- 399

Query: 403 DGLCIPCKAEEPGILIGMIKESRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILI 462
                      PG  IG I   +      GY +K      +L++ + H      TGD+  
Sbjct: 400 -----------PG-EIGEIV-VKGPQIMKGYWNKPEETAAVLQDGWLH------TGDVGY 440

Query: 463 KDKFQYFYFKDRTGD 477
            D+  +FY KDR  D
Sbjct: 441 MDEDGFFYVKDRKKD 455

Length = 563

>gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional

 Score = 60.9 bits (148), Expect = 7e-10
 Identities = 70/325 (21%), Positives = 117/325 (36%), Gaps = 68/325 (20%)

Query: 74  VEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILI 133
           +   + R A    + G++ GD VAL M     +        ++G  A  +N + +   + 
Sbjct: 17  LAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFKPEEIA 76

Query: 134 HSIKVAECKAIIYGAELSEALTEVKDSIP-GISLYAAGTRRKPQAKVLPSTTLLDEELPE 192
           + ++ +  + +I  A+L   L  +  ++P G+++ +  T         P        +  
Sbjct: 77  YILEDSGARVLIAHADL---LHGLASALPAGVTVLSVPT---------PPEIAAAYRISP 124

Query: 193 VSAKSPTEDI------KKNKPSDKLA------YIYTSGTTGLPK----AAVMTHVRAMFM 236
                P   I       + +P D          IYTSGTTG PK    AA      A   
Sbjct: 125 ALLTPPAGAIDWEGWLAQQEPYDGPPVPQPQSMIYTSGTTGHPKGVRRAAPTPEQAAAAE 184

Query: 237 AISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKY 296
            +      GL        T PLYH+A    G+    LGG  +V++ +F      +   ++
Sbjct: 185 QMRALIY-GLKPGIRALLTGPLYHSAPNAYGLRAGRLGG-VLVLQPRFDPEELLQLIERH 242

Query: 297 NCTVAQYIGEMCRYLLAVPEK--------------------PEDTQHSVKMMIGNGLRPQ 336
             T    +  M   LL +PE+                    P D +   + MI      +
Sbjct: 243 RITHMHMVPTMFIRLLKLPEEVRAKYDVSSLRHVIHAAAPCPADVK---RAMI------E 293

Query: 337 VWEPFQKRFGLDRICEFYGATEGNA 361
            W P         I E+YG+TE  A
Sbjct: 294 WWGPV--------IYEYYGSTESGA 310

Length = 509

>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE)

 Score = 60.3 bits (147), Expect = 9e-10
 Identities = 30/75 (40%), Positives = 39/75 (52%), Gaps = 5/75 (6%)

Query: 214 IYTSGTTGLPKAAVMTHVRAMFM--AISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQC 271
           I+TSG+TG PKA V  H     +  A       GLT DD    +LPL+H   GL  + + 
Sbjct: 83  IFTSGSTGKPKAVV--HTWGNHLASARGSAENLGLTPDDNWLLSLPLFHV-SGLAIVMRS 139

Query: 272 LLGGSTVVIRSKFSA 286
           LL G  +V+  KF A
Sbjct: 140 LLAGGALVLPDKFDA 154

O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407

>gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS)

 Score = 60.1 bits (146), Expect = 1e-09
 Identities = 100/431 (23%), Positives = 151/431 (35%), Gaps = 117/431 (27%)

Query: 73  QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPE-YVCMWLGLSKIGVVAAFINTNQRQHI 131
           ++++ S R AN   S G+ +G+ V   +   PE YV   LG  K+G V   + +      
Sbjct: 5   ELKELSARFANVLASLGVGKGERVFTLLPRSPELYVAA-LGTLKLGAVYGPLFSA----- 58

Query: 132 LIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELP 191
                         +G E       ++D +              +AKVL +T  L E   
Sbjct: 59  --------------FGPE------PIRDRL-----------ELGEAKVLITTPELYERTD 87

Query: 192 EVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFM-AISGRYQTGLTSDD 250
                          P D     +TSGTTG PK  +  H RA+     + RY   L  DD
Sbjct: 88  ---------------PEDPALLHFTSGTTGKPKGVLHVH-RAVVAHYATARYVLDLRPDD 131

Query: 251 VVYTTLPLYHTAGGLLGIGQCLLGGSTVVI-RSKFSASNFWKDCIKYNCTV--------- 300
           V + T       G   GI   LL G T+V+   +F A  ++    +   TV         
Sbjct: 132 VYWCTADPGWVTGTSYGIIAPLLNGVTLVVDEGEFDAERWYGILEEEKVTVWYTAPTALR 191

Query: 301 ----------AQYIGEMCRYLLAVPEKPEDTQHSVKMMIGNGLRPQVWEPFQKRFGLDRI 350
                     A+Y     R++ +V               G  L P+V    +K  G+  I
Sbjct: 192 MLMRAGPELAARYDLSSLRHIASV---------------GEPLNPEVVVWGEKVLGM-PI 235

Query: 351 CEFYGATEGN----ANLMNADGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLC 406
            + +  TE      AN      K G++G      +P     +I+         R+ DGL 
Sbjct: 236 HDTWWQTETGAIMIANYPGIPVKPGSMGR----PLPGIEAAVIE---------RDGDGLT 282

Query: 407 IPCKAEEPGILIGMIKESRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKF 466
                 + G L   +K     S F GY   +              D  + TGD+  +D+ 
Sbjct: 283 PVTGPGQVGEL--ALKPGWP-SMFRGYLGNEERYASSFV------DGWYLTGDLAYRDED 333

Query: 467 QYFYFKDRTGD 477
            YF+F  R  D
Sbjct: 334 GYFWFVGRADD 344

This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443

>gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes

 Score = 59.9 bits (146), Expect = 1e-09
 Identities = 49/192 (25%), Positives = 82/192 (42%), Gaps = 41/192 (21%)

Query: 69  TVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQ 127
           T+T+ ++   +N IA   ++ G+  GD VA+ M    E +   LG+   G     I+ +Q
Sbjct: 12  TLTYGELARRANAIAAALRAAGVAPGDLVAVVMPKGWEQIVAVLGILLAGAAYVPIDPDQ 71

Query: 128 ----RQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPST 183
               R  IL      A  +A          LT+   + P                  P  
Sbjct: 72  PAERRAAIL----ARAGARA---------VLTDPGLAQPEE---------------APDL 103

Query: 184 TLLDEELPEVSAKSPTEDIKKNKPSDKLAY-IYTSGTTGLPKAAVMTHVRAM--FMAISG 240
            ++ ++    +A+SP     +  P D LAY I+TSG+TG PK  ++TH  A+   + ++ 
Sbjct: 104 LVVADD--AAAAESPAPPPPRVDPDD-LAYVIFTSGSTGEPKGVMITHRAAVNTILDVNR 160

Query: 241 RYQTGLTSDDVV 252
           R+  G+   D V
Sbjct: 161 RF--GVGPADRV 170

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 59.8 bits (145), Expect = 2e-09
 Identities = 58/199 (29%), Positives = 87/199 (43%), Gaps = 29/199 (14%)

Query: 93  GD-AVALFMEGQPEYVCMWLGLSKIGVVA--AFI-NTNQRQHI--LIHSIKVAECKAIIY 146
           GD AV LF  G P+YV  + G    GV+A  A+   + +R H   L+  I  AE + ++ 
Sbjct: 64  GDRAVLLFPSG-PDYVAAFFGCLYAGVIAVPAYPPESARRHHQERLLSIIADAEPRLLLT 122

Query: 147 GAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTEDIKKNK 206
            A+L ++L +                    A  L     LD  L E          +   
Sbjct: 123 VADLRDSLLQ------------MEELAAANAPELLCVDTLDPALAE-------AWQEPAL 163

Query: 207 PSDKLAYI-YTSGTTGLPKAAVMTH--VRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAG 263
             D +A++ YTSG+T LPK   ++H  + A    I   +   L  DDV+ + LPLYH  G
Sbjct: 164 QPDDIAFLQYTSGSTALPKGVQVSHGNLVANEQLIRHGFGIDLNPDDVIVSWLPLYHDMG 223

Query: 264 GLLGIGQCLLGGSTVVIRS 282
            + G+ Q +  G   V+ S
Sbjct: 224 LIGGLLQPIFSGVPCVLMS 242

Length = 4334

>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS)

 Score = 58.6 bits (143), Expect = 3e-09
 Identities = 43/162 (26%), Positives = 72/162 (44%), Gaps = 18/162 (11%)

Query: 207 PSDKLAY-IYTSGTTGLPKAAVMTH--VRAMFMAISGRYQTGLTSDDVV--YTTLPLYHT 261
           P D LAY IYTSG+TG PK  ++ H  +  +   +  RY  GLT+ D V  + +     +
Sbjct: 92  PDD-LAYVIYTSGSTGRPKGVMVEHRGLVNLLAWLQERY--GLTAGDRVLQFASFSFDAS 148

Query: 262 AGGLLGIGQCLLGGSTVVIRSK---FSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKP 318
              +      LL G+T+V+             +   ++  TV   +  + R LL   E  
Sbjct: 149 VWEIFP---PLLSGATLVLAPPEVLRDPEALAELLREHRITVLHLVPSLLRALLDALEPA 205

Query: 319 EDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFYGATE 358
                S++++I  G  L  ++   +++ F   R+   YG TE
Sbjct: 206 A--LPSLRLVIVGGEALPAELVRRWRELFPGARLVNAYGPTE 245

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445

>gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase

 Score = 57.7 bits (140), Expect = 6e-09
 Identities = 43/163 (26%), Positives = 62/163 (38%), Gaps = 48/163 (29%)

Query: 69  TVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQ 127
           T T+ ++    NR+A+   + GL +GD V ++M   PE V   L ++KIG +A  I +  
Sbjct: 7   TWTYSELAREVNRLASGLAALGLGKGDRVGIYMPMIPEAVVALLAIAKIGAIAVPIFSGF 66

Query: 128 RQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLD 187
               +   ++ AE K +I                      A G  R+ +        L D
Sbjct: 67  GPDAVATRLQDAEAKVLI---------------------TADGFLRRGKR-----VDLKD 100

Query: 188 EELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTH 230
                                D    IYTSGTTG PK  V TH
Sbjct: 101 ---------------------DPAMIIYTSGTTGKPKGTVHTH 122

This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474

>gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 57.2 bits (139), Expect = 7e-09
 Identities = 51/221 (23%), Positives = 81/221 (36%), Gaps = 54/221 (24%)

Query: 73  QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHIL 132
           Q+    +++A  F  +G+  G  VAL  +  PE +  +L L + G     +N  Q    L
Sbjct: 33  QLCARIDQLAAGFAQQGVVEGSGVALRGKNSPETLLAYLALLQCGARVLPLNP-QLPQPL 91

Query: 133 IHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPE 192
           +   ++     + +   L    T    +   + L         Q + L + TL       
Sbjct: 92  LE--ELLPSLTLDFALVLEGENTFSALTSLHLQLVEGAHAVAWQPQRLATMTL------- 142

Query: 193 VSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTH---------VRAMFMAISGRYQ 243
                                  TSG+TGLPKAAV T          V ++         
Sbjct: 143 -----------------------TSGSTGLPKAAVHTAQAHLASAEGVLSLM--PFTAQD 177

Query: 244 TGLTSDDVVYTTLPLYHTAGGLLGI-GQCLLGGSTVVIRSK 283
           + L S       LPL+H +G   GI  + L  G+T+V+R K
Sbjct: 178 SWLLS-------LPLFHVSG--QGIVWRWLYAGATLVVRDK 209

Length = 458

>gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated

 Score = 57.3 bits (139), Expect = 1e-08
 Identities = 109/443 (24%), Positives = 176/443 (39%), Gaps = 74/443 (16%)

Query: 73  QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHIL 132
           ++++ S  +A + +S+GL +G  VA+ M    +Y      + + G V   +N       L
Sbjct: 53  ELDELSRALAAWLQSRGLAKGARVAIMMPNVLQYPVAIAAVLRAGYVVVNVNPLYTPREL 112

Query: 133 IHSIKVAECKAII----YGAELSEAL--TEVKDSIP---GISLYAAGT-----RRKPQAK 178
            H +K +  +AI+    +   + + L  T VK  +    G  L   G       R+ +  
Sbjct: 113 EHQLKDSGAEAIVVLENFATTVQQVLAKTAVKHVVVASMGDLLGFKGHIVNFVVRRVKKM 172

Query: 179 V----LPSTTLLDEELPEVSAKSPTEDIKKNKPS-DKLAYI-YTSGTTGLPKAAVMTH-- 230
           V    LP     ++ L E + ++     K  K   D +A++ YT GTTG+ K A + H  
Sbjct: 173 VPAWSLPGHVRFNDALAEGARQT----FKPVKLGPDDVAFLQYTGGTTGVSKGATLLHRN 228

Query: 231 VRAMFMAISGRYQTGLTS---DDVVYT--TLPLYH----TAGGLLGIGQCLLGGSTVVIR 281
           + A  + +    Q         D +     LPLYH    T  GLLG+     GG  ++I 
Sbjct: 229 IVANVLQMEAWLQPAFEKKPRPDQLNFVCALPLYHIFALTVCGLLGMR---TGGRNILIP 285

Query: 282 SKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMIGNGLRPQ--VWE 339
           +      F K+  KY   +   +  +   LL  P+  +     + +  G G+  Q  V E
Sbjct: 286 NPRDIPGFIKELKKYQVHIFPAVNTLYNALLNNPDFDKLDFSKLIVANGGGMAVQRPVAE 345

Query: 340 PFQKRFGLDRICEFYGATE----GNANLMNADGKVGAVGYIPYIAIPFYPVGLIKCDPET 395
            + +  G   I E YG +E       N ++A    G +G      +P          P T
Sbjct: 346 RWLEMTGCP-ITEGYGLSETSPVATCNPVDATEFSGTIG------LPL---------PST 389

Query: 396 SEPIRNKDGLCIPCKAEEPG-ILIGMIKESRAESHFNGYADKKASEKKILRNVYSHGDAA 454
              IR+ DG  +P    EPG I I      R      GY ++     K++       D  
Sbjct: 390 EVSIRDDDGNDLPLG--EPGEICI------RGPQVMAGYWNRPDETAKVM-----TADGF 436

Query: 455 FNTGDILIKDKFQYFYFKDRTGD 477
           F TGD+ + D+  Y    DR  D
Sbjct: 437 FRTGDVGVMDERGYTKIVDRKKD 459

Length = 557

>gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional

 Score = 56.9 bits (138), Expect = 1e-08
 Identities = 56/191 (29%), Positives = 87/191 (45%), Gaps = 30/191 (15%)

Query: 89  GLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVAECKAII-YG 147
           GL +G  VA++ E + E++    G+    +VAA +  N  +  L ++++  ECKAI+  G
Sbjct: 142 GLTKGSNVAIYEETRWEWLASIYGIWSQSMVAATVYANLGEDALAYALRETECKAIVCNG 201

Query: 148 AELSEALTEVK------------DSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSA 195
             +   L  +K            DS+P  S+   G R      ++  T ++ +     S 
Sbjct: 202 KNVPNLLRLMKSGGMPNTTIIYLDSLPA-SVDTEGCR------LVAWTDVVAKGHSAGSH 254

Query: 196 KSPTEDIKKNKPSDKLAYI-YTSGTTGLPKAAVMTH--VRAMFMAISGRYQT--GLTSDD 250
                 I +N   D LA I YTSGTTG PK  + TH  + A  +A+  R     G   +D
Sbjct: 255 HPLN--IPENN--DDLALIMYTSGTTGDPKGVMHTHGSLTAGILALEDRLNDLIGPPEED 310

Query: 251 VVYTT-LPLYH 260
             Y + LPL H
Sbjct: 311 ETYCSYLPLAH 321

Length = 700

>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

 Score = 56.5 bits (137), Expect = 2e-08
 Identities = 72/302 (23%), Positives = 116/302 (38%), Gaps = 94/302 (31%)

Query: 202  IKKNKPSDKLAYIYTSGTTGLPKAAVMTH------VRAMFMAISGRYQTGLTSDDVVYTT 255
                KP D    I++SG+ G PK  +++H      +  +           L +DDV+ ++
Sbjct: 776  GPTFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVF------NLRNDDVILSS 829

Query: 256  LPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCR-----Y 310
            LP +H+ G  + +   LL G  VV                 + T A  I ++        
Sbjct: 830  LPFFHSFGLTVTLWLPLLEGIKVVYH--------------PDPTDALGIAKLVAKHRATI 875

Query: 311  LLAVPE-----------KPEDTQHSVKMMIGNG--LRPQVWEPFQKRFGLDRICEFYGAT 357
            LL  P             P     S+++++     L+P+V + F+++FG+ RI E YGAT
Sbjct: 876  LLGTPTFLRLYLRNKKLHPLMFA-SLRLVVAGAEKLKPEVADAFEEKFGI-RILEGYGAT 933

Query: 358  E----GNANLMN--ADG-------KVGAVGY-IPYIAIPFYPVGLIKCDPETSEPIRNKD 403
            E     + NL +  A         K G+VG  +P +A+          DPET E      
Sbjct: 934  ETSPVASVNLPDVLAADFKRQTGSKEGSVGMPLPGVAVRI-------VDPETFE------ 980

Query: 404  GLCIPCKAEEPG-ILIG----MIKESRAESHFNGYADKKASEKKILRNVYSHGDAAFNTG 458
                     E G ILIG    M           GY        ++++++   G   + TG
Sbjct: 981  ----ELPPGEDGLILIGGPQVM----------KGYLGDPEKTAEVIKDIDGIG--WYVTG 1024

Query: 459  DI 460
            D 
Sbjct: 1025 DK 1026

Length = 1146

>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C)

 Score = 56.0 bits (136), Expect = 2e-08
 Identities = 40/167 (23%), Positives = 67/167 (40%), Gaps = 34/167 (20%)

Query: 69  TVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTN- 126
           ++T+ ++ + +NR+A   +++G+  GD VAL +E  PE V   L + K G     ++   
Sbjct: 12  SLTYAELNERANRLARRLRARGVGPGDVVALLLERSPELVVAILAILKAGAAYVPLDPAY 71

Query: 127 --QRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTT 184
             +R   ++                        +DS   + L         +A  LP   
Sbjct: 72  PAERLAFML------------------------EDSGARVLLTDESLAPLARADQLPLVI 107

Query: 185 LLDEELPEVSAKSPTEDIKKNKPSDKLAYI-YTSGTTGLPKAAVMTH 230
           L +E   E +              D LAY+ YTSG+TG PK   + H
Sbjct: 108 LEEELDAEDAGPPAPA----VDADD-LAYVMYTSGSTGRPKGVAVPH 149

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474

>gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated

 Score = 56.2 bits (136), Expect = 2e-08
 Identities = 52/201 (25%), Positives = 76/201 (37%), Gaps = 48/201 (23%)

Query: 89  GLQRGDAVALFMEGQPEYV-----CMWLGL--------SKIGVVAAFINTNQRQHILIHS 135
           GL+ GD VAL  E   ++V     C + GL           G   ++I   +        
Sbjct: 70  GLKPGDRVALIAETDGDFVEAFFACQYAGLVPVPLPLPMGFGGRESYIAQLRGM------ 123

Query: 136 IKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSA 195
           +  A+  AII   EL   + E     P +      +      K LP     D  LP  + 
Sbjct: 124 LASAQPAAIITPDELLPWVNEATHGNPLL---HVLSHA--WFKALPEA---DVALPRPTP 175

Query: 196 KSPTEDIKKNKPSDKLAYI-YTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLT--SDDVV 252
                        D +AY+ Y+SG+T  P+  ++TH RA+   +      GL     D  
Sbjct: 176 -------------DDIAYLQYSSGSTRFPRGVIITH-RALMANLRAISHDGLKVRPGDRC 221

Query: 253 YTTLPLYHTAGGLLGIGQCLL 273
            + LP YH   GL+G    LL
Sbjct: 222 VSWLPFYHDM-GLVG---FLL 238

Length = 579

>gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional

 Score = 55.9 bits (135), Expect = 2e-08
 Identities = 47/200 (23%), Positives = 82/200 (41%), Gaps = 24/200 (12%)

Query: 73  QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFIN----TNQR 128
           Q+ D + +++      G++ GD VA        ++  W G+  IG +   +N      Q 
Sbjct: 44  QIHDRALKVSQALDRDGIKLGDRVATIAWNTWRHLEAWYGIMGIGAICHTVNPRLFPEQI 103

Query: 129 QHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTL--- 185
             I+ H    AE + +I        L ++ D +P +  Y   T     A  +P TTL   
Sbjct: 104 AWIINH----AEDRVVITDLTFVPILEKIADKLPSVERYVVLT----DAAHMPQTTLKNA 155

Query: 186 --LDEELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMF---MAISG 240
              +E + E       +   +N  +      YTSGTTG PK  + +H R+     +  + 
Sbjct: 156 VAYEEWIAEADGDFAWKTFDENTAA---GMCYTSGTTGDPKGVLYSH-RSNVLHALMANN 211

Query: 241 RYQTGLTSDDVVYTTLPLYH 260
               G ++ D +   +PL+H
Sbjct: 212 GDALGTSAADTMLPVVPLFH 231

Length = 542

>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 55.4 bits (134), Expect = 3e-08
 Identities = 86/418 (20%), Positives = 148/418 (35%), Gaps = 94/418 (22%)

Query: 70  VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQR 128
            TF Q++D SNR+AN  +  G++RGD V +++   PE     L + K+G V+  ++    
Sbjct: 7   YTFGQLKDASNRLANALRELGVERGDRVGVYLPQSPETAIAHLAVYKLGAVSVPLSVLFG 66

Query: 129 QHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDE 188
              + H ++ +  + ++         T+  D  P I +Y +GT   P+  +     LL  
Sbjct: 67  PDAVEHRLRDSGARVLV---------TDGSDD-PAILIYTSGTTGPPKGALHGHRVLLG- 115

Query: 189 ELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTS 248
                           + P  +L +         P+                        
Sbjct: 116 ----------------HLPGVELYFEL------APR-----------------------P 130

Query: 249 DDVVYTTLPLYHTAGGLLGI-GQCLLGGSTVVI--RSKFSASNFWKDCIKYNCTVAQYIG 305
            DV +T    +   GGLL +    L  G  VV     +F     +    +Y  T A    
Sbjct: 131 GDVFWTPAD-WAWIGGLLDVLLPALYFGVPVVAYRMQRFDPERAFALMRRYGVTNAFLPP 189

Query: 306 EMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFYGATEGNANL 363
              + +  V  +       ++ +   G  L  ++ E  +   GL  + EFYG TE N  +
Sbjct: 190 TALKMMRRVGSERARYDLRLRAVASGGESLGEELLEWARDELGLT-VNEFYGQTEANLVV 248

Query: 364 MNA----DGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIG 419
            N       + G++G      +P + V ++  D         + G  I  K  +P + +G
Sbjct: 249 GNCAALGPARPGSMGK----PVPGHEVAVV--DDAGRPVPPGEVGE-IAVKRPDPVMFLG 301

Query: 420 MIKESRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGD 477
                             A+  K        GD    TGD+  +D   Y +FK R  D
Sbjct: 302 YWNNPE------------ATAAKF------AGD-WLLTGDLGRRDADGYLWFKGRADD 340

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439

>gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed

 Score = 55.4 bits (134), Expect = 3e-08
 Identities = 54/212 (25%), Positives = 92/212 (43%), Gaps = 18/212 (8%)

Query: 78  SNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIK 137
            +R+A      G+ RGD V+  +    E+  ++L  S+IG V   +    R+  L   +K
Sbjct: 65  VDRVAVGLARLGVGRGDVVSCQLPNWWEFTVLYLACSRIGAVLNPLMPIFRERELSFMLK 124

Query: 138 VAECKAIIY-----GAELSEALTEVKDSIPGIS-LYAAGTRRKPQAKVLPSTTLLDEE-- 189
            AE K ++      G + +     ++  +P +  +   G       + L  T   ++E  
Sbjct: 125 HAESKVLVVPKTFRGFDHAAMARRLRPELPALRHVVVVGGDGADSFEALLITPAWEQEPD 184

Query: 190 LPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAM--FMAISGRYQTGLT 247
            P + A+       +  P D    IYTSGTTG PK  + T    M   +  + R   GL 
Sbjct: 185 APAILARL------RPGPDDVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAER--LGLG 236

Query: 248 SDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVV 279
           +DDV+    P+ H  G + G+   ++ G+T V
Sbjct: 237 ADDVILMASPMAHQTGFMYGLMMPVMLGATAV 268

Length = 547

>gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents

 Score = 54.6 bits (132), Expect = 6e-08
 Identities = 47/197 (23%), Positives = 70/197 (35%), Gaps = 38/197 (19%)

Query: 80  RIANFFKSKGLQRGDAVALFMEGQPEYV-CMW---LGLSKIGVV-------AAFINTNQR 128
           RI    ++ GL+ GD+V L +E   ++V   W   LG    G V         +   N  
Sbjct: 51  RILAGLRALGLKPGDSVILQLERNEDFVTAFWACVLG----GFVPVPVAVPPTYDEPNAA 106

Query: 129 QHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDE 188
              L +  ++     I+  A L  AL                              L   
Sbjct: 107 VAKLRNIWELLGSPVILTDAALVAAL-------------------AGLRTRAGLEALRVL 147

Query: 189 ELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTH--VRAMFMAISGRYQTGL 246
            + E+ +  P   +   +P D    + TSG+TG+PK  V+TH  + A           G 
Sbjct: 148 AIEELRSAPPDAPLHPARPDDPALLLLTSGSTGVPKCVVLTHRNILARSAGTVQVN--GF 205

Query: 247 TSDDVVYTTLPLYHTAG 263
           T DDV    +PL H  G
Sbjct: 206 TPDDVSLNWMPLDHVGG 222

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560

>gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated

 Score = 54.8 bits (132), Expect = 6e-08
 Identities = 36/180 (20%), Positives = 70/180 (38%), Gaps = 12/180 (6%)

Query: 89  GLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVAECKAIIYGA 148
           G+     V   M    E++ +   ++ +G V   +N       ++H I  AE + I+   
Sbjct: 60  GITGDQRVGSMMYNCAEHLEVLFAVACMGAVFNPLNKQLMNDQIVHIINHAEDEVIVADP 119

Query: 149 ELSEALTEVKDSIPGIS---LYAAGTRRKPQAKVLPSTTLLDEE--LPEVSAKSPTEDIK 203
            L+E L E+    P +               A +     +   E  L   S      ++ 
Sbjct: 120 RLAEQLGEILKECPCVRAVVFIGPSDADSAAAHMPEGIKVYSYEALLDGRSTVYDWPELD 179

Query: 204 KNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMF---MAISGRYQTGLTSDDVVYTTLPLYH 260
           +   +   A  Y++GTTG PK  V +H R+++   +++       +T  +     +P+YH
Sbjct: 180 ETTAA---AICYSTGTTGAPKGVVYSH-RSLYLQSLSLRTTDSLAVTHGESFLCCVPIYH 235

Length = 576

>gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase

 Score = 54.1 bits (130), Expect = 8e-08
 Identities = 64/297 (21%), Positives = 119/297 (40%), Gaps = 25/297 (8%)

Query: 79  NRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKV 138
           +RIA      G+ RGD V+  +  + E+  ++L  ++IG V   +    R+  L   +  
Sbjct: 64  DRIAVGLARLGVGRGDVVSFQLPNRWEFTALYLACARIGAVLNPLMPIFRERELSFMLNH 123

Query: 139 AECKAIIY-----GAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEV 193
           A+ K  +      G + +    E++  +P +            +      T   ++ P+ 
Sbjct: 124 ADSKVFVVPSVFRGFDHAAMARELQSKLPALRQVVVIDGDGDDSFDRVLMTPERDDTPDA 183

Query: 194 SAKSPTEDIKKNKPS--DKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQ-TGLTSDD 250
           +A      +   +PS  D    IYTSGTTG PK  VM     +F  I    +   L   D
Sbjct: 184 AAI-----LAGPRPSPDDVTQLIYTSGTTGEPK-GVMHTANTLFSNIHPYAERLELGGGD 237

Query: 251 VVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASN----FWKDCIKYNCTVAQYIGE 306
           V+    P+ H  G + G+   L+  +T V++  ++ +       +  + +      ++ +
Sbjct: 238 VILMASPMAHQTGFMYGLMMPLILNATAVLQDIWNPARAAELIRETGVTFTMASTPFLTD 297

Query: 307 MCRYLLAVPE--KPEDTQHSVKMMIGNGLRPQVWEPFQKRFGLDRICEFYGATEGNA 361
           +CR   AV E   P  +  +  +  G  +   + E   +  G   I   +G TE  A
Sbjct: 298 LCR---AVKESGAPVPSLFTF-LCAGAPIPGILVERAWELLGA-LIVSAWGMTENGA 349

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538

>gnl|CDD|213304 cd05938, hsFATP2a_ACSVL_like, Fatty acid transport proteins (FATP) including hsFATP2, hsFATP5, and hsFATP6, and similar proteins

 Score = 53.9 bits (130), Expect = 1e-07
 Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 1/65 (1%)

Query: 13  IPNVEGKAGMAAIVDTEN-SLDLKQLISGMQKTLPTYARPLFVRTIREVPMTGAYKYTVT 71
           +P  EG+AGMAA++       DL++L   +++ LP YARP F+R    + +TG +K    
Sbjct: 442 VPGHEGRAGMAAVILKPGTEFDLEKLYQHVREFLPAYARPRFLRIQDSMEVTGTFKQQKV 501

Query: 72  FQVED 76
             VE+
Sbjct: 502 RLVEE 506

Fatty acid transport proteins (FATP) of this family transport long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes hsFATP2, hsFATP5, and hsFATP6, and similar proteins. Each FATP has unique patterns of tissue distribution. These FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. The hsFATP proteins exist in two splice variants; the b variant, lacking exon 3, has no acyl-CoA synthetase activity. FATPs are key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 535

>gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE)

 Score = 54.2 bits (131), Expect = 1e-07
 Identities = 49/188 (26%), Positives = 77/188 (40%), Gaps = 27/188 (14%)

Query: 57  IREVPMTGAYKYTVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSK 115
           I + P+TG  K T T+ ++ D  +R+A   +  G+ +GD V ++M   PE V   L  ++
Sbjct: 62  IYDSPVTGT-KRTYTYAELYDEVSRLAGVLRKLGVVKGDRVIIYMPMIPEAVIAMLACAR 120

Query: 116 IGVVAAFINTNQRQHILIHSIKVAECKAII---YGAE----------LSEALTEVKDSIP 162
           IG + + +        L   I  A+ K I+   +G E          L +AL   +    
Sbjct: 121 IGAIHSVVFGGFASKELASRIDDAKPKLIVTASFGIEPGRVVPYKPLLDKALELSQHKPH 180

Query: 163 GISLYAAGTRRKPQAKV--LPSTTLLDEELPEVSAKSPTEDIKKNKPSDKLAYI-YTSGT 219
            + +       + Q      P   L   EL   +       ++   P     YI YTSGT
Sbjct: 181 KVLIL-----NRGQVPAPLKPGRDLDWAELMAKARPVDCVPVESTDPL----YILYTSGT 231

Query: 220 TGLPKAAV 227
           TG PK  V
Sbjct: 232 TGKPKGVV 239

PrpE catalyzes the first step of the 2-methylcitric acid cycle for propionate catabolism. It activates propionate to propionyl-CoA in a two-step reaction, which proceeds through a propionyl-AMP intermediate and requires ATP and Mg2+. In Salmonella enterica, the PrpE protein is required for growth of S. enterica on propionate and can substitute for the acetyl-CoA synthetase (Acs) enzyme during growth on acetate. PrpE can also activate acetate, 3HP, and butyrate to their corresponding CoA-thioesters, although with less efficiency. Length = 607

>gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme)

 Score = 53.7 bits (130), Expect = 1e-07
 Identities = 47/183 (25%), Positives = 71/183 (38%), Gaps = 55/183 (30%)

Query: 79  NRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKV 138
            R AN  KS G+++GD VA++M   PE     L  ++IG               IHS   
Sbjct: 89  CRFANVLKSLGVKKGDRVAIYMPMIPELPIAMLACARIGA--------------IHS--- 131

Query: 139 AECKAIIYGAELSEALTE-VKDSIPGISLYAAGTRRKPQAKVLPSTTLLDE---ELPEVS 194
                +++    +EAL + + D+   + + A G  R    KV+P   ++DE   + P V 
Sbjct: 132 -----VVFAGFSAEALADRINDAKSKLLITADGGYRG--GKVIPLKEIVDEALEKCPSVE 184

Query: 195 -------AKSPT-----------EDIKKNKPS---------DKLAYIYTSGTTGLPKAAV 227
                                  + + K  P          D L  +YTSG+TG PK  V
Sbjct: 185 KVIVVKRTGGEVPMVEGRDVWWHDLMAKASPYCEPEPMDAEDPLFILYTSGSTGKPKGVV 244

Query: 228 MTH 230
            T 
Sbjct: 245 HTT 247

Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is widely present in all living organisms. The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. Acetyl-CoA is used in the biosynthesis of glucose, fatty acids, and cholesterol. It can also be used in the production of energy in the citric acid cycle. Eukaryotes typically have two isoforms of acetyl-CoA synthetase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. Length = 602

>gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated

 Score = 53.5 bits (129), Expect = 2e-07
 Identities = 98/454 (21%), Positives = 163/454 (35%), Gaps = 82/454 (18%)

Query: 54  VRTIREVPMTGAYKYTVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLG 112
           V    + P    +  T T+ ++     R A   ++ G++ GD VA+ +   P+++  +  
Sbjct: 42  VARFGDRPALDFFGATTTYAELGKQVRRAAAGLRALGVRPGDRVAIVLPNCPQHIVAFYA 101

Query: 113 LSKIGVVAAFINTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIP-----GISLY 167
           + ++G V    N     H L H  +    +  I   +++  +  ++ + P      +++ 
Sbjct: 102 VLRLGAVVVEHNPLYTAHELEHPFEDHGARVAIVWDKVAPTVERLRRTTPLETIVSVNMI 161

Query: 168 AAGTRRKPQAKVLPSTTLLD---------------EELPEVSAKSPTEDIKKNKP---SD 209
           AA    +  A  LP   L                 E L  V A    +    + P    D
Sbjct: 162 AAMPLLQRLALRLPIPALRKARAALTGPAPGTVPWETL--VDAAIGGDGSDVSHPRPTPD 219

Query: 210 KLAYI-YTSGTTGLPKAAVMTHVRAMFMAISGR-YQTGL-TSDDVVYTTLPLYHTAGGLL 266
            +A I YTSGTTG PK A +TH      A  G+ +  GL    + V   LP++H  G  L
Sbjct: 220 DVALILYTSGTTGKPKGAQLTHRNLFANAAQGKAWVPGLGDGPERVLAALPMFHAYGLTL 279

Query: 267 GIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVP----------E 316
            +   +  G  +V+           D I     +         +L  VP          E
Sbjct: 280 CLTLAVSIGGELVLLPAPDI-----DLI-----LDAMKKHPPTWLPGVPPLYEKIAEAAE 329

Query: 317 KPEDTQHSVKMMIGNG--LRPQVWEPFQKRFGLDRICEFYGATEGN----ANLMNADGKV 370
           +       V+        L     E ++K  G   + E YG TE +     N M+ D + 
Sbjct: 330 ERGVDLSGVRNAFSGAMALPVSTVELWEKLTG-GLLVEGYGLTETSPIIVGNPMSDDRRP 388

Query: 371 GAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHF 430
           G VG      +PF         P+T   I + +         E G L+      R    F
Sbjct: 389 GYVG------VPF---------PDTEVRIVDPEDPDETMPDGEEGELL-----VRGPQVF 428

Query: 431 NGYADKKASEKKILRNVYSHGDAAFNTGDILIKD 464
            GY ++     K         D  F TGD+++ +
Sbjct: 429 KGYWNRPEETAKSFL------DGWFRTGDVVVME 456

Length = 573

>gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated

 Score = 53.1 bits (128), Expect = 2e-07
 Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 2/73 (2%)

Query: 214 IYTSGTTGLPKAAVMTHVRAMFMAISGRYQT-GLTSDDVVYTTLPLYHTAGGLLGIGQCL 272
           +YTSGTTG PK  V++  RA+   +    +    T+DDV+   LPL+H  G +LG+   L
Sbjct: 134 VYTSGTTGPPKGVVLSR-RAIAADLDALAEAWQWTADDVLVHGLPLFHVHGLVLGVLGPL 192

Query: 273 LGGSTVVIRSKFS 285
             G+  V   + +
Sbjct: 193 RIGNRFVHTGRPT 205

Length = 471

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 53.6 bits (129), Expect = 2e-07
 Identities = 59/294 (20%), Positives = 100/294 (34%), Gaps = 35/294 (11%)

Query: 73  QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHIL 132
           ++   +NR+A+   + G+     V + +E   E V   L + K G     ++    Q  L
Sbjct: 542 ELNRQANRLAHVLIAAGVGPDVLVGIAVERSIEMVVGLLAVLKAGGAYVPLDPEYPQDRL 601

Query: 133 IHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPE 192
            + +  +  + ++  + L   L  V   +  +                     LDE    
Sbjct: 602 AYMLDDSGVRLLLTQSHLLAQL-PVPAGLRSL--------------------CLDEPADL 640

Query: 193 VSAKSPTEDIKKNKPSDKLAY-IYTSGTTGLPKAAVMTHVRAM---FMAISGRYQTGLTS 248
           +       + +     D LAY IYTSG+TG PK   ++H  A+      I+ R Q  L +
Sbjct: 641 LCG-YSGHNPEVALDPDNLAYVIYTSGSTGQPKGVAISH-GALANYVCVIAERLQ--LAA 696

Query: 249 DDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSK---FSASNFWKDCIKYNCTVAQYIG 305
           DD +          G     G  L  G+T+ +        A  F         TV + + 
Sbjct: 697 DDSMLMVSTFAFDLGVTELFGA-LASGATLHLLPPDCARDAEAFAALMADQGVTVLKIVP 755

Query: 306 EMCRYLLAVPEKPEDTQHSVKMMIGNGLRPQVWEP-FQKRFGLDRICEFYGATE 358
              + LL              +  G  L+  +         G  R+   YG TE
Sbjct: 756 SHLQALLQASRVALPRPQRALVCGGEALQVDLLARVRALGPGA-RLINHYGPTE 808

Length = 3956

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 53.6 bits (129), Expect = 2e-07
 Identities = 56/214 (26%), Positives = 88/214 (41%), Gaps = 21/214 (9%)

Query: 157  VKDSIPGISL---YAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTEDIKKNKPSDKLAY 213
            ++DS  GI L    +    R P    L S  +LD+E   +   S +       P   LAY
Sbjct: 1667 IEDS--GIELLLTQSHLQARLPLPDGLRSL-VLDQEDDWLEGYSDSNPAVNLAP-QNLAY 1722

Query: 214  -IYTSGTTGLPKAAVMTH--VRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQ 270
             IYTSG+TG PK A   H  +     A    YQ  L++ DVV      +     +  +  
Sbjct: 1723 VIYTSGSTGRPKGAGNRHGALVNRLCATQEAYQ--LSAADVVLQFTS-FAFDVSVWELFW 1779

Query: 271  CLLGGSTVVIRSKFSASNFWKDCIKYNC----TVAQYIGEMCRYLLAVPEKPEDTQHSVK 326
             L+ G+ +VI     A    +  I+       T   ++  M + LL + E+ E    S++
Sbjct: 1780 PLINGARLVIAP-PGAHRDPEQLIQLIERQQVTTLHFVPSMLQQLLQMDEQVEHPL-SLR 1837

Query: 327  MMI--GNGLRPQVWEPFQKRFGLDRICEFYGATE 358
             ++  G  L  +   P+ +R     +   YG TE
Sbjct: 1838 RVVCGGEALEVEALRPWLERLPDTGLFNLYGPTE 1871

Length = 3956

>gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family protein

 Score = 53.2 bits (128), Expect = 2e-07
 Identities = 62/249 (24%), Positives = 92/249 (36%), Gaps = 64/249 (25%)

Query: 64  GAYKYTVTFQVEDHSNRIANFFKSKGL-----QRGDAVALFMEGQPEYVCMWLGLSKIGV 118
           G Y++    QV +   R+ NF  + GL      + + VA+F + + E    WL    I +
Sbjct: 102 GEYEWITYGQVFE---RVCNF--ASGLVALGHNKEERVAIFADTRAE----WL----IAL 148

Query: 119 VAAFINTNQRQHI-------------LIHSIKVAECKAIIYG-------AELSEALTEVK 158
              F     RQ+I             L HS+   E   +I          ++S  L  VK
Sbjct: 149 QGCF-----RQNITVVTIYASLGEEALCHSLNETEVTTVICDSKQLKKLIDISSQLETVK 203

Query: 159 DSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTEDIKKNKPS-DKLAYI-YT 216
             I    +   G           + T+      EV        +  + PS + +A I YT
Sbjct: 204 RVI---YMDDEGVDSDSSLSGSSNWTV--SSFSEVEKLGKENPVDPDLPSPNDIAVIMYT 258

Query: 217 SGTTGLPKAAVMTHVRAMFMAISGRYQT--GLTSDDVVYTTLPLYH-----------TAG 263
           SG+TGLPK  +MTH   +   ++G       L  +DV    LPL H             G
Sbjct: 259 SGSTGLPKGVMMTH-GNIVATVAGVMTVVPKLGKNDVYLAYLPLAHILELAAESVMAAVG 317

Query: 264 GLLGIGQCL 272
             +G G  L
Sbjct: 318 AAIGYGSPL 326

Length = 696

>gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase

 Score = 52.9 bits (127), Expect = 3e-07
 Identities = 69/275 (25%), Positives = 108/275 (39%), Gaps = 33/275 (12%)

Query: 207 PSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLL 266
           P D +   +TSGTTG PK   ++H   +  +++     G   DDV   T PL H  GGL 
Sbjct: 171 PDDAVLICFTSGTTGRPKGVTISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHI-GGLS 229

Query: 267 GIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQYIG--EMCRYLLAVPEKPEDTQ-- 322
                L+ G+  V+  KF A       IK +  V   I    M   L+++  K    +  
Sbjct: 230 SALAMLMVGACHVLLPKFDAKAAL-QAIKQHN-VTSMITVPAMMADLISLTRKSMTWKVF 287

Query: 323 HSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFYGATEGNANL--MNADGKVGAVGYIPY 378
            SV+ ++  G  L  ++    +K F   ++   YG TE  ++L  M          + P 
Sbjct: 288 PSVRKILNGGGSLSSRLLPDAKKLFPNAKLFSAYGMTEACSSLTFMTL--------HDPT 339

Query: 379 IAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFN------- 431
           +  P     L   +   S  +    G+C+   A    + IG+ + SR             
Sbjct: 340 LESP--KQTLQTVNQTKSSSVHQPQGVCVGKPAPHVELKIGLDESSRVGRILTRGPHVML 397

Query: 432 GYADKKASEKKILRNVYSHGDAAFNTGDILIKDKF 466
           GY  + +    +L N     D   +TGDI   DK 
Sbjct: 398 GYWGQNSETASVLSN-----DGWLDTGDIGWIDKA 427

Length = 563

>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated

 Score = 52.7 bits (127), Expect = 3e-07
 Identities = 30/86 (34%), Positives = 43/86 (50%), Gaps = 4/86 (4%)

Query: 209 DKLAYIYTSGTTGLPKAAVMTHVRAMFMAIS--GRYQTGLTSDDVVYTTLPLYHTAGGLL 266
           D   + +TSGTTG PKAAV+TH +  F+  +       G T  D      PL H A G+ 
Sbjct: 164 DPCWFFFTSGTTGRPKAAVLTHGQMAFVITNHLADLMPGTTEQDASLVVAPLSHGA-GIH 222

Query: 267 GIGQCLLGGSTVVIRS-KFSASNFWK 291
            + Q   G +TV++ S +F  +  W 
Sbjct: 223 QLCQVARGAATVLLPSERFDPAEVWA 248

Length = 528

>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like

 Score = 52.2 bits (125), Expect = 4e-07
 Identities = 50/223 (22%), Positives = 89/223 (39%), Gaps = 28/223 (12%)

Query: 89  GLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVAECKAIIYGA 148
           G+++GD V L +     +  ++L +  +G +   +N          S  + E K  +   
Sbjct: 88  GVRQGDVVLLLLPNSVYFPVIFLAVLSLGGIVTTMNP---------SSSLGEIKKRVVDC 138

Query: 149 ELSEALTEVKDS-------IPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTED 201
            +  A T  ++        +P I +         + +      L+ E+  +   K     
Sbjct: 139 SVGLAFTSPENVEKLSPLGVPVIGVPENYDFDSKRIEFPKFYELIKED-FDFVPKPVI-- 195

Query: 202 IKKNKPSDKLAYIYTSGTTGLPKAAVMTH-----VRAMFMAISGRYQTGLTSDDVVYTTL 256
               K  D  A +Y+SGTTG  K  V+TH     +  +F+           SD+V    L
Sbjct: 196 ----KQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYEYPGSDNVYLAAL 251

Query: 257 PLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCT 299
           P++H  G  L +   L  GST+V+  +F AS+  K   ++  T
Sbjct: 252 PMFHIYGLSLFVVGLLSLGSTIVVMRRFDASDMVKVIDRFKVT 294

Length = 560

>gnl|CDD|213283 cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score = 51.7 bits (123), Expect = 5e-07
 Identities = 77/434 (17%), Positives = 142/434 (32%), Gaps = 61/434 (14%)

Query: 64  GAYKYTVTFQVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFI 123
             ++ T   +V   + R+    ++ G+  GD VA        ++  +  +  +G V    
Sbjct: 21  EVHRTT-YAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTA 79

Query: 124 NTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRR-KPQAKVLPS 182
           N       + + +  AE K +++   L   +                        K    
Sbjct: 80  NPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEA------IRGELKTVQHFVVMDEKAPEG 133

Query: 183 TTLLDEELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMF--MAISG 240
               +E L E +      +             YT+GTTGLPK  V +H   +   +A S 
Sbjct: 134 YLAYEEALGEEADPVRVPE------RAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASL 187

Query: 241 RYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTV 300
              T L+  DVV   +P++H     L     L+G   V+   +   ++  +       T 
Sbjct: 188 VDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVT- 246

Query: 301 AQYIGEMCRYLLAVPEKPEDTQHS----VKMMIGNGLRPQVWEPFQKRFGLDRICEFYGA 356
             +   +    LA+ +  E T H      ++++G    P+             + + YG 
Sbjct: 247 --FTAGVPTVWLALADYLESTGHRLKTLRRLVVGGSAAPRSLIAR-FERMGVEVRQGYGL 303

Query: 357 TEGNANLMNADGKVGAVGYIP-YIAIPFYPVGLIKCDPETSEPIRNKDGL---------C 406
           TE           V          ++            E    ++ K GL          
Sbjct: 304 TE-------TSPVVVQNFVKSHLESLS----------EEEKLTLKAKTGLPIPLVRLRVA 346

Query: 407 IPCKAEEP--GILIGMIKESRAESHFNGY-ADKKASEKKILRNVYSHGDAAFNTGDILIK 463
                  P  G  +G ++  +      GY  +++A+   +  + +      F TGDI + 
Sbjct: 347 DEEGRPVPKDGKALGEVQ-LKGPWITGGYYGNEEATRSALTPDGF------FRTGDIAVW 399

Query: 464 DKFQYFYFKDRTGD 477
           D+  Y   KDR  D
Sbjct: 400 DEEGYVEIKDRLKD 413

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified in Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes an uncharacterized subgroup of FACS. Length = 509

>gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1

 Score = 51.1 bits (122), Expect = 7e-07
 Identities = 95/423 (22%), Positives = 168/423 (39%), Gaps = 61/423 (14%)

Query: 69  TVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQ 127
            VT+ +V   + R A   +S GL++G  V + +    EY  + LG+   G V +  N   
Sbjct: 55  AVTYGEVVRDTRRFAKALRSLGLRKGQVVVVVLPNVAEYGIVALGIMAAGGVFSGANPTA 114

Query: 128 RQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLD 187
            +  +    + A  K I+        +  +   +P I L           +      +  
Sbjct: 115 LESEIKKQAEAAGAKLIVTNDTNYGKVKGL--GLPVIVL----------GEEKIEGAVNW 162

Query: 188 EELPEVSAK-SPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTG- 245
           +EL E + +   T D ++   +D  A  ++SGTTG+ K  ++TH   +    S  +  G 
Sbjct: 163 KELLEAADRAGDTSDNEEILQTDLCALPFSSGTTGISKGVMLTHRNLVANLCSSLFSVGP 222

Query: 246 -LTSDDVVYTTLPLYHTAGGLLGIG-QCLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQY 303
            +    V    +P +H   G+ GI    L     VV+ S+F    F    I    + A  
Sbjct: 223 EMIGQVVTLGLIPFFHIY-GITGICCATLRNKGKVVVMSRFELRTFLNALITQEVSFAPI 281

Query: 304 IGEMCRYLLAVPEKPEDTQHSVK----MMIGNGLRPQVWEPFQKRFGLDRICEFYGATE- 358
           +  +   L+  P   E     +K    M     L P++   F+ +F   ++ E YG TE 
Sbjct: 282 VPPIILNLVKNPIVEEFDLSKLKLQAIMTAAAPLAPELLTAFEAKFPGVQVQEAYGLTEH 341

Query: 359 -------GNANLMNADGKVGAVGYI-PYIAIPFYPVGLIKCDPETSEPI-RNKDG-LCIP 408
                  G+    +   K  +VG+I P + + F        DP+T   + +N  G LC+ 
Sbjct: 342 SCITLTHGDPEKGHGIAKKNSVGFILPNLEVKF-------IDPDTGRSLPKNTPGELCV- 393

Query: 409 CKAEEPGILIGMIKESRAESHFNGY-ADKKASEKKILRNVYSH-GDAAF--NTGDILIKD 464
                           R++    GY  +K+ +++ I  + + H GD  +  + GDI I D
Sbjct: 394 ----------------RSQCVMQGYYNNKEETDRTIDEDGWLHTGDIGYIDDDGDIFIVD 437

Query: 465 KFQ 467
           + +
Sbjct: 438 RIK 440

Length = 546

>gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA)

 Score = 51.1 bits (123), Expect = 7e-07
 Identities = 50/188 (26%), Positives = 74/188 (39%), Gaps = 41/188 (21%)

Query: 199 TEDIKKNKPSDKLAYI-YTSGTTGLPKAAVMTH--VRAMFMAISGRYQTGLTSDDVVYTT 255
           T+        D +A+I ++SG+TG PK  ++TH  +     AI       +TS+DV  + 
Sbjct: 96  TDRDSLLSLPDDIAFIQFSSGSTGEPKGVILTHKNLLTNIEAIIEA--AEITSEDVFLSW 153

Query: 256 LPLYHTAG--------GLLGIGQCLLGGSTVVIRSKFSASNFWKDCI-KYNCTVAQYIGE 306
           +PL H  G          LGI Q L+     + R        W D   ++  T+      
Sbjct: 154 MPLTHDMGLIGFHLTPTALGINQYLMPTRLFIRR-----PLLWLDKASQHRATI------ 202

Query: 307 MC------RYLL--AVPEKPEDTQHSVKMMIGNGLRPQVW---EPFQKR---FGLDRICE 352
           +       +YLL     EK  D   S   +I NG  P      E F ++   FGL     
Sbjct: 203 LSSPNFGYKYLLKHFKTEKIIDWDLSSVRLIFNGAEPISADLCEEFLEKMAPFGLRPNAM 262

Query: 353 F--YGATE 358
           +  YG  E
Sbjct: 263 YPVYGLAE 270

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPS similar to mycosubtilin synthase subunit A (MycA). Mycosubtilin, which is characterized by a beta-amino fatty acid moiety linked to the circular heptapeptide Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin family of lipopeptide antibiotics. The mycosubtilin synthase subunit A (MycA) combines functional domains derived from peptide synthetases, amino transferases, and fatty acid synthases. Nonribosomal peptide synthetases are large multifunction enzymes that synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 499

>gnl|CDD|131369 TIGR02316, propion_prpE, propionate--CoA ligase

 Score = 51.1 bits (122), Expect = 8e-07
 Identities = 68/284 (23%), Positives = 105/284 (36%), Gaps = 90/284 (31%)

Query: 69  TVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQ 127
           T+T+ Q+    N  A+  ++ G+ RGD V ++M    E V   L  ++IG          
Sbjct: 83  TLTYRQLHREVNVFASALRALGVGRGDRVLIYMPMIAEAVFAMLACARIGA--------- 133

Query: 128 RQHILIHSIKVAECKAIIYGAELSEAL-TEVKDSIPGISLYA-AGTRRKPQAKVLPSTTL 185
                IHS        +++G   S +L   + D+ P + + A AG R     KV+P   L
Sbjct: 134 -----IHS--------VVFGGFASHSLALRIDDATPKLIVSADAGMR---GGKVIPYKPL 177

Query: 186 LDEELPE-----------------------------------VSAKSPTEDIKKNKPSDK 210
           LD  + E                                     A+ P E ++ N+PS  
Sbjct: 178 LDAAIAEAQHPPPHVLLVDRGLAPMRLIPGRDVDYAALRTQHEDAQVPVEWLESNEPS-- 235

Query: 211 LAYI-YTSGTTGLPKA----------AVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLY 259
             YI YTSGTTG PK           A+   + A+F   +G  Q   ++ DV +     Y
Sbjct: 236 --YILYTSGTTGKPKGVQRDVGGYAVALALSMWAIFGIRAG--QVMFSASDVGWVVGHSY 291

Query: 260 HTAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQY 303
                LL       G +TV+    +       D   +   V +Y
Sbjct: 292 IVYAPLLA------GAATVL----YEGLPTNPDPGVWWSIVERY 325

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. Length = 628

>gnl|CDD|172019 PRK13382, PRK13382, acyl-CoA synthetase; Provisional

 Score = 51.3 bits (123), Expect = 8e-07
 Identities = 57/298 (19%), Positives = 110/298 (36%), Gaps = 25/298 (8%)

Query: 69  TVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQ 127
           T+T+ ++++ S+ +A   ++  +     V +       +V   L  ++IG     +NT+ 
Sbjct: 68  TLTWRELDERSDALAAALQALPIGEPRVVGIMCRNHRGFVEALLAANRIGADILLLNTSF 127

Query: 128 RQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLD 187
               L   +       +IY  E S  +       P               +++  T    
Sbjct: 128 AGPALAEVVTREGVDTVIYDEEFSATVDRALADCPQ------------ATRIVAWTDEDH 175

Query: 188 EELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLT 247
           +   EV   +      +         + TSGTTG PK A  +    +    +   +T   
Sbjct: 176 DLTVEVLIAAHAGQRPEPTGRKGRVILLTSGTTGTPKGARRSGPGGIGTLKAILDRTPWR 235

Query: 248 SDDVVYTTLPLYHTAGGLLGIGQCLLGGS---TVVIRSKFSASNFWKDCIKYNCTVAQYI 304
           +++      P++H      G  Q +L  S   T+V R +F          ++  T    +
Sbjct: 236 AEEPTVIVAPMFHA----WGFSQLVLAASLACTIVTRRRFDPEATLDLIDRHRATGLAVV 291

Query: 305 GEMCRYLLAVPEKPED--TQHSVKMMIGNG--LRPQVWEPFQKRFGLDRICEFYGATE 358
             M   ++ +P +  +  +  S++    +G  +RP V   F  +FG D I   Y ATE
Sbjct: 292 PVMFDRIMDLPAEVRNRYSGRSLRFAAASGSRMRPDVVIAFMDQFG-DVIYNNYNATE 348

Length = 537

>gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated

 Score = 51.1 bits (123), Expect = 9e-07
 Identities = 51/193 (26%), Positives = 75/193 (38%), Gaps = 19/193 (9%)

Query: 80  RIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVA 139
           R+A+    +G+ RGD VA+ +   P  V    G+   G V   +NT      +   ++  
Sbjct: 55  RLASALARRGIGRGDTVAVLLPNIPAMVEAHFGVPMAGAVLNTLNTRLDAASIAFMLRHG 114

Query: 140 ECKAII----YGAELSEALTEVKDSIPGI-----SLYAAGTRRKPQAKVLPSTTLLDEEL 190
           E K +I    +     EAL  +    P +       Y  G         L     L    
Sbjct: 115 EAKVLIVDTEFAEVAREALALLPGPKPLVIDVDDPEYPGGRF----IGALDYEAFLASGD 170

Query: 191 PEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDD 250
           P+ +   P ++       D +A  YTSGTTG PK  V  H  A   A+S     G+    
Sbjct: 171 PDFAWTLPADEW------DAIALNYTSGTTGNPKGVVYHHRGAYLNALSNILAWGMPKHP 224

Query: 251 VVYTTLPLYHTAG 263
           V   TLP++H  G
Sbjct: 225 VYLWTLPMFHCNG 237

Length = 545

>gnl|CDD|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 49.6 bits (119), Expect = 2e-06
 Identities = 44/194 (22%), Positives = 72/194 (37%), Gaps = 29/194 (14%)

Query: 207 PSDKLAYIYTSGTTGLPKAAVMTH--VRAMFMAISGRYQTGLTSDD------------VV 252
            +D L  +YT GTTG+PK  +     +  + +          T ++              
Sbjct: 2   SADDLYMLYTGGTTGMPKGVMWRQEDIFRVLLGGPDFATGEPTLEELAKQVAAGGAGTRF 61

Query: 253 YTTLPLYHTAGGLLGIGQCLLGGSTVVI--RSKFSASNFWKDCIKYNCTVAQYIGE-MCR 309
               PL H AG  L +   L  G TVV+    KF     W+   K+       +G+   R
Sbjct: 62  LPACPLMHGAGQWLALSA-LFAGGTVVLLPDDKFDPDRVWRTVEKHRVNTLVIVGDAFAR 120

Query: 310 YLLAVPEKPEDTQ-HSVKMMIGNGLRPQVWEPFQKRFGLD-----RICEFYGATE--GNA 361
            LL   E        S++ +  +G    +W P  K+  L+      + +  GA+E  G  
Sbjct: 121 PLLEALEAAGRYDLSSLRAISSSGA---MWSPEVKQGLLELLPNLALVDALGASETGGGG 177

Query: 362 NLMNADGKVGAVGY 375
           + ++  G   A G 
Sbjct: 178 SSVSRAGGASATGK 191

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 365

>gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS)

 Score = 49.1 bits (118), Expect = 3e-06
 Identities = 30/98 (30%), Positives = 40/98 (40%), Gaps = 4/98 (4%)

Query: 206 KPSDKLAY-IYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGG 264
            P D  AY IYTSG+TG PK  V+TH        +     G+   D V     +      
Sbjct: 97  SPDD-PAYVIYTSGSTGKPKGVVITHRNICNFLRAEGAILGIRPGDRVLQFASIAFDV-S 154

Query: 265 LLGIGQCLLGGSTVVIRSKFSASNFWKDCIK-YNCTVA 301
           +L I   LL G T+VI  +        + +     TVA
Sbjct: 155 ILEIFTTLLAGGTLVIPPEELRLEDLAEFLNRLRVTVA 192

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447

>gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA

 Score = 49.2 bits (117), Expect = 3e-06
 Identities = 101/440 (22%), Positives = 169/440 (38%), Gaps = 57/440 (12%)

Query: 58  REVPMTGAYKYTVTFQVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIG 117
           R+ P+T    YT   ++E  +   A      G  +  +VAL++   P++   + G  K G
Sbjct: 43  RDRPIT----YT---ELEAMAETAAAALLRAGYGKDASVALYLGNTPDHPINFFGALKAG 95

Query: 118 VVAAFINTNQRQHILIHSIKVAECKAII---YGAELSEALTEVK----DSIPGISLYAAG 170
                ++    +  L H +  +  + +I     A L  AL  ++    D +        G
Sbjct: 96  ARVVHLSPLDGERALSHKLSDSGARLLITSDLAALLPMALKFLEKGLLDRLIVCEDDNWG 155

Query: 171 TRRKPQAKVLPSTTLLDEELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTH 230
               PQA  +P+   +      V   +   +     P D     YT GTTGLPK A++TH
Sbjct: 156 KVGTPQAP-IPADPRIVTYADFVKGAAAPAEWPAVTPDDVALLQYTGGTTGLPKGAMLTH 214

Query: 231 VRAMFMAISGRYQTGL----TSDDV--VYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKF 284
              +  A+S     G     T  DV  V   LPL+H     + + + L  G  + +  +F
Sbjct: 215 GN-LTSAVSIYDVWGKPSRATRGDVERVICVLPLFHIYALTVILLRSLRRGDLISLHQRF 273

Query: 285 SASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMIGNGLRP---QVWEPF 341
             +  ++D  +   TV   +  M   L   P   E    S    IG+G  P   +V   F
Sbjct: 274 DVAAVFRDIEEKRATVFPGVPTMWIALANDPSL-EKRDLSSLATIGSGGAPLPVEVANFF 332

Query: 342 QKRFGLDRICEFYGATE----GNANLMNADGKVGAVGYIPYIAIPFYPVGLIKCDPETSE 397
           +++ GL ++   +G TE    G  +      K G++G    + +P   + ++  D     
Sbjct: 333 ERKTGL-KLKSGWGMTETCSPGTGHPPEGPDKPGSIG----LMLPGIELDVVSLDD---- 383

Query: 398 PIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNGYADKKASEKKILRNVYSHGDAAFNT 457
                     P K   PG  +G ++  R  +   GY ++         +  +     F T
Sbjct: 384 ----------PTKVLPPG-EVGELR-IRGPNVTRGYWNRPEE------SAEAFVGDRFLT 425

Query: 458 GDILIKDKFQYFYFKDRTGD 477
           GDI   D   YF+  DR  D
Sbjct: 426 GDIGYMDTDGYFFLVDRKKD 445

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. Length = 541

>gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated

 Score = 49.2 bits (117), Expect = 3e-06
 Identities = 54/221 (24%), Positives = 83/221 (37%), Gaps = 33/221 (14%)

Query: 79  NRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKV 138
             +A   +++ + RG  V +  +  PE     L  +K+G +A   + N     +    ++
Sbjct: 52  GGLAADLRAQSVSRGSRVLVISDNGPETYLSVLACAKLGAIAVMADGNLPIAAIERFCQI 111

Query: 139 AECKAIIYGAEL---SEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSA 195
            +  A +        S A+ E   SIP I++  A   R+                   S 
Sbjct: 112 TDPAAALVAPGSKMASSAVPEALHSIPVIAVDIAAVTRE-------------------SE 152

Query: 196 KSPTEDIKKNKPS----DKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDV 251
            S               D LA I+TSGTTG PKA ++ + R  F       + GL     
Sbjct: 153 HSLDAASLAGNADQGSEDPLAMIFTSGTTGEPKAVLLAN-RTFFAVPDILQKEGLNWVTW 211

Query: 252 V-----YTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSAS 287
           V     Y+ LP  H  GGL  I  CL+ G   V   + + S
Sbjct: 212 VVGETTYSPLPATHI-GGLWWILTCLMHGGLCVTGGENTTS 251

Length = 540

>gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional

 Score = 49.2 bits (117), Expect = 3e-06
 Identities = 64/298 (21%), Positives = 110/298 (36%), Gaps = 18/298 (6%)

Query: 73  QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHIL 132
           Q  D   R+A    S  + + D V++     P    M   +   G V   INT      +
Sbjct: 44  QTYDRCCRLAASLISLNITKNDVVSVLAPNTPAMYEMHFAVPMAGAVLNPINTRLDATSI 103

Query: 133 IHSIKVAECKAIIYGAELSEALTEVKDSIPG---------ISLYAAGTRRKPQAKVLPST 183
              ++ A+ K +           EV   +           I ++     ++P ++ L   
Sbjct: 104 AAILRHAKPKILFVDRSFEPLAREVLHLLSSEDSNLNLPVIFIHEIDFPKRPSSEELDYE 163

Query: 184 TLLD--EELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGR 241
            L+   E  P + A+      +     D ++  YTSGTT  PK  V++H  A    +S  
Sbjct: 164 CLIQRGEPTPSLVARM----FRIQDEHDPISLNYTSGTTADPKGVVISHRGAYLSTLSAI 219

Query: 242 YQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVA 301
               + +  V   TLP++H  G     G    GG++V +R   +A   +K+   +N T  
Sbjct: 220 IGWEMGTCPVYLWTLPMFHCNGWTFTWGTAARGGTSVCMR-HVTAPEIYKNIEMHNVTHM 278

Query: 302 QYIGEMCRYLLAVPEKPEDTQHS-VKMMIGNGLRPQVWEPFQKRFGLDRICEFYGATE 358
             +  +   LL         +   V ++ G    P       +R G  ++   YG TE
Sbjct: 279 CCVPTVFNILLKGNSLDLSPRSGPVHVLTGGSPPPAALVKKVQRLGF-QVMHAYGLTE 335

Length = 579

>gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase

 Score = 48.9 bits (117), Expect = 5e-06
 Identities = 54/215 (25%), Positives = 77/215 (35%), Gaps = 19/215 (8%)

Query: 57  IREVPMTGAYKYTVTFQVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKI 116
           IR     G YK+    +       I +     G+ +G  V L+   +PE++ +    S  
Sbjct: 67  IRVDGTVGEYKWMTYGEAGTARTAIGSGLVQHGIPKGACVGLYFINRPEWLIVDHACSAY 126

Query: 117 GVVAA----FINTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISL---YAA 169
             V+      +  +  + I+ H    AE  AI    +    L      IP + L      
Sbjct: 127 SYVSVPLYDTLGPDAVKFIVNH----AEVAAIFCVPQTLNTLLSCLSEIPSVRLIVVVGG 182

Query: 170 GTRRKPQAKVLPSTTLLD----EELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKA 225
                P    LPS T ++     +L      SP       KP D     YTSGTTG PK 
Sbjct: 183 ADEPLPS---LPSGTGVEIVTYSKLLAQGRSSPQPFRPP-KPEDVATICYTSGTTGTPKG 238

Query: 226 AVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYH 260
            V+TH   +         T     DV  + LPL H
Sbjct: 239 VVLTHGNLIANVAGSSLSTKFYPSDVHISYLPLAH 273

Length = 651

>gnl|CDD|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional

 Score = 48.1 bits (115), Expect = 7e-06
 Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 11/98 (11%)

Query: 192 EVSAKSPTEDIKKNKPS---DKLA-YIYTSGTTGLPKAAVMTH-----VRAMFMAISGRY 242
           +++A  PT  +     +   D +A Y++TSG+TG+PKA + T        AM   +  R 
Sbjct: 200 DLAATPPTAAVAAAIAAITPDTVAKYLFTSGSTGMPKAVINTQRMMCANIAMQEQLRPRE 259

Query: 243 QTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVI 280
                   + +  +P  HT GG       L GG T+ I
Sbjct: 260 PDPPPPVSLDW--MPWNHTMGGNANFNGLLWGGGTLYI 295

Length = 624

>gnl|CDD|215353 PLN02654, PLN02654, acetate-CoA ligase

 Score = 48.0 bits (114), Expect = 8e-06
 Identities = 74/306 (24%), Positives = 121/306 (39%), Gaps = 34/306 (11%)

Query: 73  QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVV-----AAFINTNQ 127
           ++ D   ++AN+ K  G+++GDAV +++    E     L  ++IG V     A F   + 
Sbjct: 125 ELLDRVCQLANYLKDVGVKKGDAVVIYLPMLMELPIAMLACARIGAVHSVVFAGFSAESL 184

Query: 128 RQHILIHSIKVA-ECKAIIYGAEL-------SEALTEVKDSIPGISLYAAGTRRKPQAKV 179
            Q I+    KV   C A+  G +          AL E   +  G+S+    T     A  
Sbjct: 185 AQRIVDCKPKVVITCNAVKRGPKTINLKDIVDAALDESAKN--GVSVGICLTYENQLAMK 242

Query: 180 LPSTTLLDEE---LPEVSAKSPTE-DIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAM- 234
              T   +       +V    PT+ +++     D L  +YTSG+TG PK  + T    M 
Sbjct: 243 REDTKWQEGRDVWWQDVVPNYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMV 302

Query: 235 FMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNF----- 289
           + A + +Y       DV + T       G        +L G+TV++     A N+     
Sbjct: 303 YTATTFKYAFDYKPTDVYWCTADCGWITGHSYVTYGPMLNGATVLVFE--GAPNYPDSGR 360

Query: 290 -WKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMM-----IGNGLRPQVWEPFQK 343
            W    KY  T+      + R L+   ++   T+HS K +     +G  + P  W  F  
Sbjct: 361 CWDIVDKYKVTIFYTAPTLVRSLMRDGDEYV-TRHSRKSLRVLGSVGEPINPSAWRWFFN 419

Query: 344 RFGLDR 349
             G  R
Sbjct: 420 VVGDSR 425

Length = 666

>gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional

 Score = 48.4 bits (116), Expect = 8e-06
 Identities = 63/284 (22%), Positives = 100/284 (35%), Gaps = 76/284 (26%)

Query: 111 LGLSKIGVVAAFINTNQRQHILIHSIKVAECKAI------IYGAELSEALTEVKDSIPGI 164
             L   G V A IN +     ++ + K A+ K +      I  A L   +  ++  I  I
Sbjct: 700 FALQSAGRVPAMINFSAGIANILSACKAAQVKTVLTSRAFIEKARLGPLIEALEFGIRII 759

Query: 165 SLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPK 224
            L            V     L D+    ++ + P        P D    ++TSG+ G PK
Sbjct: 760 YL----------EDVRAQIGLADKIKGLLAGRFPLVYFCNRDPDDPAVILFTSGSEGTPK 809

Query: 225 AAVMTHVRAMFMAISGRYQTG----LTSDDVVYTTLPLYH----TAGGLLGIGQCLLG-- 274
             V++H R +   ++ R Q       + +D V+  LP++H    T G +L +   L G  
Sbjct: 810 GVVLSH-RNL---LANRAQVAARIDFSPEDKVFNALPVFHSFGLTGGLVLPL---LSGVK 862

Query: 275 --------------------GSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAV 314
                                +T++    F    F      Y      Y     RY+ A 
Sbjct: 863 VFLYPSPLHYRIIPELIYDTNATIL----FGTDTFLNG---YARYAHPYDFRSLRYVFAG 915

Query: 315 PEKPEDTQHSVKMMIGNGLRPQVWEPFQKRFGLDRICEFYGATE 358
            EK ++               Q W    ++FG+ RI E YG TE
Sbjct: 916 AEKVKEETR------------QTWM---EKFGI-RILEGYGVTE 943

Length = 1140

>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE)

 Score = 47.6 bits (114), Expect = 9e-06
 Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 1/63 (1%)

Query: 69  TVTFQVEDH-SNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQ 127
           ++TFQ  D   +++A    + G++RGD VAL  +   E++ ++L L ++G V   +N   
Sbjct: 1   SLTFQELDQRVSQLAEQLAALGVRRGDRVALLAKNSIEFLLLFLALLRLGAVVLPLNPRL 60

Query: 128 RQH 130
            Q 
Sbjct: 61  PQE 63

O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407

>gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)

 Score = 47.9 bits (114), Expect = 9e-06
 Identities = 92/413 (22%), Positives = 153/413 (37%), Gaps = 96/413 (23%)

Query: 73  QVEDHSNRIANFFKSK-GLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHI 131
            + D +NRIA+      G+  G+ V L     P  V  WL + K G +        R   
Sbjct: 65  DLLDRANRIAHVLVEDLGVVPGNRVLLRSANTPMLVACWLAVLKAGAIVVTTMPLLRAK- 123

Query: 132 LIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELP 191
                   E   I+  A ++ AL +                                   
Sbjct: 124 --------ELTTIVDKARITHALCDK---------------------------------- 141

Query: 192 EVSAKSPTEDIKKNKPSDKLAYI-YTSGTTGLPKAAVMTH--VRAMFMAISGRYQTGLTS 248
            ++A            +D +A I +TSGTTGLPK  +  H  + A+  A   R+    T 
Sbjct: 142 RLTA------------ADDVALIGFTSGTTGLPKGTMHFHRDILAICDAFP-RHVLQPTP 188

Query: 249 DDVVYTTLPLYHTAG-GLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEM 307
           DDV   + PL  T G G L +     G S V++  + +     K   ++  T+       
Sbjct: 189 DDVFIGSPPLAFTFGLGGLVLFPLRFGASAVLL-EQATPPLLLKAIQEHRATILFTAPTA 247

Query: 308 CRYLLAVPEKPEDTQHSVKMMIGNGLRPQVWEPFQKRFGLDRICEFYGATEGNANLMNAD 367
            R +L   +  + +     +  G  L  +VW+ + +R GL +I +  GATE     ++A+
Sbjct: 248 YRAMLIKVKAFDISSLRKCVSAGETLPAKVWQDWYERTGL-KIIDGIGATEMLHIFISAN 306

Query: 368 ---GKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKES 424
               K GA G      +P Y              I +  G  +P    E G L       
Sbjct: 307 EENAKPGATGK----PVPGY-----------EARIVDDQGNEVP--RGEAGRL-----AV 344

Query: 425 RAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGD 477
           R  +      D++  +++ +R+ ++       TGDI  +D+  YF++  R+ D
Sbjct: 345 RGPTGCRYLDDER--QQEYVRDGWNV------TGDIFRQDEDGYFHYVARSDD 389

ABCL catalyzes the initial step in the 2-aminobenzoate aerobic degradation pathway by activating 2-aminobenzoate to 2-aminobenzoyl-CoA. The reaction is carried out via a two-step process; the first step is ATP-dependent and forms a 2-aminobenzoyl-AMP intermediate, and the second step forms the 2-aminobenzoyl-CoA ester and releases the AMP. 2-Aminobenzoyl-CoA is further converted to 2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by 2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been purified from cells aerobically grown with 2-aminobenzoate as sole carbon, energy, and nitrogen source, and has been characterized as a monomer. Length = 487

>gnl|CDD|235624 PRK05850, PRK05850, acyl-CoA synthetase; Validated

 Score = 47.6 bits (114), Expect = 1e-05
 Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 7/96 (7%)

Query: 197 SPTEDIKKNKPSDKLAYI-YTSGTTGLPKAAVMTH--VRAMFMAIS----GRYQTGLTSD 249
           SP     + +     AY+ YTSG+T  P   +++H  V A F  +     G        D
Sbjct: 148 SPRGSDARPRDLPSTAYLQYTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGGVPPPD 207

Query: 250 DVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFS 285
             V + LP YH  G +LG+   +LGG   V+ S  +
Sbjct: 208 TTVVSWLPFYHDMGLVLGVCAPILGGCPAVLTSPVA 243

Length = 578

>gnl|CDD|139538 PRK13390, PRK13390, acyl-CoA synthetase; Provisional

 Score = 47.3 bits (112), Expect = 1e-05
 Identities = 58/256 (22%), Positives = 92/256 (35%), Gaps = 43/256 (16%)

Query: 73  QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPE-YVCMWLGLSKIGVVAAFINTNQRQHI 131
           Q++D S  +A      GL+ GD VAL  +  PE  V +W  L + G+    IN       
Sbjct: 29  QLDDDSAALARVLYDAGLRTGDVVALLSDNSPEALVVLWAAL-RSGLYITAIN------- 80

Query: 132 LIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELP 191
             H +   E   I+ G   +  L     ++ G++           +           E  
Sbjct: 81  --HHLTAPEADYIV-GDSGARVLV-ASAALDGLAAKVGADLPLRLSFGGEIDGFGSFEAA 136

Query: 192 EVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKA---------------AVMTHVRAMFM 236
              A     +    +P   +  +Y+SGTTG PK                 ++   RA + 
Sbjct: 137 LAGAGPRLTE----QPCGAVM-LYSSGTTGFPKGIQPDLPGRDVDAPGDPIVAIARAFY- 190

Query: 237 AISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKY 296
                    ++  D+ Y++ P+YH A  L         G TVV+  +F A        +Y
Sbjct: 191 --------DISESDIYYSSAPIYH-AAPLRWCSMVHALGGTVVLAKRFDAQATLGHVERY 241

Query: 297 NCTVAQYIGEMCRYLL 312
             TV Q +  M   LL
Sbjct: 242 RITVTQMVPTMFVRLL 257

Length = 501

>gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase

 Score = 47.2 bits (113), Expect = 1e-05
 Identities = 46/183 (25%), Positives = 71/183 (38%), Gaps = 56/183 (30%)

Query: 79  NRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKV 138
            R AN  KS G+++GD VA++M   PE     L  ++IG               IHS   
Sbjct: 99  CRFANVLKSLGVKKGDRVAIYMPMIPEAAIAMLACARIGA--------------IHS--- 141

Query: 139 AECKAIIYGAELSEALTE-VKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEEL--PEVSA 195
                +++G   +EAL + + D+   + + A    R    KV+P   ++DE L    VS 
Sbjct: 142 -----VVFGGFSAEALADRINDAGAKLVITADEGLRG--GKVIPLKAIVDEALEKCPVSV 194

Query: 196 KS-------------------PTEDIKKNKPS----------DKLAYIYTSGTTGLPKAA 226
           +                       D+     +          D L  +YTSG+TG PK  
Sbjct: 195 EHVLVVRRTGNPVPWVEGRDVWWHDLMAKASAYCEPEPMDSEDPLFILYTSGSTGKPKGV 254

Query: 227 VMT 229
           + T
Sbjct: 255 LHT 257

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by pfam00501. Length = 625

>gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional

 Score = 46.4 bits (111), Expect = 2e-05
 Identities = 56/231 (24%), Positives = 89/231 (38%), Gaps = 42/231 (18%)

Query: 64  GAYKY-TVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAA 121
           G   Y  ++F +++  S+ IA+   + G+ RG    L +    E+  +   L K G V  
Sbjct: 35  GKLAYDELSFAELDARSDAIAHGLNAAGIGRGMRAVLMVTPSLEFFALTFALFKAGAVPV 94

Query: 122 FIN-----TNQRQHILIHSIKVAECKAIIYGAELSEALTEV----KDSIPGISLYAAGTR 172
            ++      N +Q  L  +    +  A I G   +     +    K S+    L   G R
Sbjct: 95  LVDPGMGIKNLKQ-CLAEA----QPDAFI-GIPKAHLARRLFGWGKPSV--RRLVTVGGR 146

Query: 173 RKPQAKVLPSTTLLDEELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVR 232
                  L         L    A +P   +    P D  A ++TSG+TG PK  V TH  
Sbjct: 147 LLWGGTTL-------ATLLRDGAAAPFP-MADLAPDDMAAILFTSGSTGTPKGVVYTH-- 196

Query: 233 AMFMA----ISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVV 279
            MF A    +   Y  G+   ++   T PL+     L G     LG ++V+
Sbjct: 197 GMFEAQIEALREDY--GIEPGEIDLPTFPLF----ALFGP---ALGMTSVI 238

Length = 552

>gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA synthetase (VL-FACS)

 Score = 46.2 bits (110), Expect = 3e-05
 Identities = 57/223 (25%), Positives = 94/223 (42%), Gaps = 21/223 (9%)

Query: 69  TVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQ 127
           T+T+ Q  +   + A  F   GL+R  +V +     PE+    +G    G +A  I T  
Sbjct: 8   TLTYKQYYEACRQAAKAFLKLGLERFHSVGILGFNSPEWFIAAVGAIFAGGIAVGIYTTN 67

Query: 128 R----QHILIHS---IKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVL 180
                Q++   S   I V +       A+  + +  ++D +P   L A    R+P  +  
Sbjct: 68  SPEACQYVAETSEANILVVD------NAKQLQKILAIQDQLP--HLKAIIQYREPLKEKE 119

Query: 181 PSTTLLDE--ELPEVSAKSPTEDIKKN-KPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMA 237
           P+     E  EL         + I ++ KP+     IYTSGTTG+PK  +++H    + A
Sbjct: 120 PNLYSWKEFMELGRSIPDEQLDAIIESQKPNQCCTLIYTSGTTGMPKGVMLSHDNITWTA 179

Query: 238 ISGRYQTGLTSD--DVVYTTLPLYHTAGGLLGIGQCLLGGSTV 278
            +      L +   + V + LPL H A  +L I   +  G  V
Sbjct: 180 KAAVKHMDLRTVGQESVVSYLPLSHIAAQILDIWLPISVGGCV 222

This family of very long-chain fatty acid CoA synthetase is named bubblegum because Drosophila melanogaster mutant bubblegum (BGM) has elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene of this family. The human homolog (hsBG) has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. VL-FACS is involved in the first reaction step of very long chain fatty acid degradation. It catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 594

>gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase

 Score = 46.0 bits (109), Expect = 3e-05
 Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 6/91 (6%)

Query: 191 PEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDD 250
           PE + K P ++         +A  YTSGTT  PK  V+ H  A  MA+S     G+    
Sbjct: 184 PEFAWKPPADEW------QSIALGYTSGTTASPKGVVLHHRGAYLMALSNALIWGMNEGA 237

Query: 251 VVYTTLPLYHTAGGLLGIGQCLLGGSTVVIR 281
           V   TLP++H  G         L G+ + +R
Sbjct: 238 VYLWTLPMFHCNGWCFTWTLAALCGTNICLR 268

Length = 567

>gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of bifunctional fatty acid transporter/very-long-chain acyl-CoA synthetase in fungi

 Score = 45.5 bits (108), Expect = 4e-05
 Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 5/60 (8%)

Query: 13  IPNVEGKAGMAAIVDTENSLD-----LKQLISGMQKTLPTYARPLFVRTIREVPMTGAYK 67
           +P  +G+AG AAI   E+S          L    +K LP+YA PLF+R   EV  TG +K
Sbjct: 396 VPGYDGRAGCAAITLEESSAVETEFTKNLLAKLARKRLPSYAVPLFLRLTEEVATTGNHK 455

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Members of this family are fungal FATPs, including FAT1 from Cochliobolus heterostrophus. Length = 468

>gnl|CDD|180374 PRK06060, PRK06060, acyl-CoA synthetase; Validated

 Score = 45.8 bits (108), Expect = 5e-05
 Identities = 76/347 (21%), Positives = 129/347 (37%), Gaps = 66/347 (19%)

Query: 73  QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHIL 132
           Q+ D + R+    +++GL  GD V L +   P+ V + L     GV+A   N        
Sbjct: 35  QIHDGAARLGEVLRNRGLSSGDRVLLCLPDSPDLVQLLLACLARGVMAFLANPE------ 88

Query: 133 IHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPE 192
           +H                       +D       +A   R    A V+ S  L D   P 
Sbjct: 89  LH-----------------------RDD------HALAARNTEPALVVTSDALRDRFQPS 119

Query: 193 --VSAKSPTEDIKKNKPSD-------KLAY-IYTSGTTGLPKAAVMTHVRAM-FMAISGR 241
               A     +  +  P          LAY  YTSGTTG PKAA+  H   + F+    R
Sbjct: 120 RVAEAAELMSEAARVAPGGYEPMGGDALAYATYTSGTTGPPKAAIHRHADPLTFVDAMCR 179

Query: 242 YQTGLTSDDVVYTTLPLYHTAGGLLGIGQCL-----LGGSTVVIRSKFSASNFWKDCIKY 296
               LT +D    +  +Y       G+G  +      GGS V+  +  +         ++
Sbjct: 180 KALRLTPEDTGLCSARMYFA----YGLGNSVWFPLATGGSAVINSAPVTPEAAAILSARF 235

Query: 297 NCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFY 354
             +V   +     +   +     D+  S++ ++  G  L   + E   + FG   I +  
Sbjct: 236 GPSVLYGVPNF--FARVIDSCSPDSFRSLRCVVSAGEALELGLAERLMEFFGGIPILDGI 293

Query: 355 GATE-GNANLMNA--DGKVGAVGYIPYIAIPFYPVGLIKCDPETSEP 398
           G+TE G   + N   + ++G +G +    +P Y + ++  D  T+ P
Sbjct: 294 GSTEVGQTFVSNRVDEWRLGTLGRV----LPPYEIRVVAPDGTTAGP 336

Length = 705

>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated

 Score = 45.2 bits (107), Expect = 5e-05
 Identities = 80/412 (19%), Positives = 137/412 (33%), Gaps = 74/412 (17%)

Query: 80  RIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVA 139
           R+A   + +G   G+ +A+        V +    +++G  A ++  N R       +  +
Sbjct: 34  RLAAVLRRRGCVDGERLAVLARNSVWLVALHFACARVG--AIYVPLNWR-------LSAS 84

Query: 140 ECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSP- 198
           E  A++  AE    L      + G    AAG               L   +    A  P 
Sbjct: 85  ELDALLQDAE--PRL------LLGDDAVAAGR---------TDVEDLAAFIASADALEPA 127

Query: 199 -TEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLP 257
            T  I   + S  L   +TSGT+G PK  +++       A +      + +        P
Sbjct: 128 DTPSIPPERVSLIL---FTSGTSGQPKGVMLSERNLQQTAHNFGVLGRVDAHSSFLCDAP 184

Query: 258 LYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQYIG--EMCRYLLAVP 315
           ++H  G +  +   L  G ++++ + F               +  Y    +M +   A P
Sbjct: 185 MFHIIGLITSVRPVLAVGGSILVSNGFEPKRTLGRLGDPALGITHYFCVPQMAQAFRAQP 244

Query: 316 E-KPEDTQHSVKMMIGNGLRPQVWEPFQKRFGLD---RICEFYGATEGNANL-MNAD--- 367
                  +H   +  G                LD    + + +G +E      M+ D   
Sbjct: 245 GFDAAALRHLTALFTGGAPHAAE----DILGWLDDGIPMVDGFGMSEAGTVFGMSVDCDV 300

Query: 368 --GKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESR 425
              K GA G      IP   V     D + ++           C A  PG L+      R
Sbjct: 301 IRAKAGAAG------IPTPTVQTRVVDDQGND-----------CPAGVPGELL-----LR 338

Query: 426 AESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGD 477
             +   GY  +  +  +        GD  F TGDI  +D   +F+  DR  D
Sbjct: 339 GPNLSPGYWRRPQATARAFT-----GDGWFRTGDIARRDADGFFWVVDRKKD 385

Length = 488

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 45.7 bits (108), Expect = 5e-05
 Identities = 59/295 (20%), Positives = 108/295 (36%), Gaps = 38/295 (12%)

Query: 73   QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHIL 132
            +++  +NR+A+  +++G+     VA+  E   E V   L + K G   A++  +      
Sbjct: 2033 ELDSRANRLAHRLRARGVGPEVRVAIAAERSFELVVALLAVLKAG--GAYVPLD------ 2084

Query: 133  IHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTL--LDEEL 190
                         Y AE    + E  DS  G +L    T+R    ++     +  L  + 
Sbjct: 2085 -----------PNYPAERLAYMLE--DS--GAALLL--TQRHLLERLPLPAGVARLPLDR 2127

Query: 191  PEVSAKSPTEDIKKNKPSDKLAY-IYTSGTTGLPKAAVMTH--VRAMFMAISGRYQTGLT 247
                A  P          + LAY IYTSG+TGLPK   ++H  + A   A   RY+    
Sbjct: 2128 DAEWADYPDTAPAVQLAGENLAYVIYTSGSTGLPKGVAVSHGALVAHCQAAGERYELSPA 2187

Query: 248  SDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIR--SKFSASNFWKDCIKYNCTVAQYIG 305
              ++ + +                LL G+ V+IR    +     + +  ++  T+  +  
Sbjct: 2188 DCELQFMSFSFDGAHEQWF---HPLLNGARVLIRDDELWDPEQLYDEMERHGVTILDFPP 2244

Query: 306  EMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFYGATE 358
                  LA   + +    +V++    G  +         +      +   YG TE
Sbjct: 2245 VYL-QQLAEHAERDGRPPAVRVYCFGGEAVPAASLRLAWEALRPVYLFNGYGPTE 2298

Length = 5163

>gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

 Score = 45.1 bits (107), Expect = 8e-05
 Identities = 51/186 (27%), Positives = 75/186 (40%), Gaps = 50/186 (26%)

Query: 198 PTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLP 257
           P     K +P D    ++TSG+ G PK  V +H   +      +     T +D   + LP
Sbjct: 355 PRLAQVKQQPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIADFTPNDRFMSALP 414

Query: 258 LYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKY----------NCTV----AQY 303
           L+H+ G  +G+   LL G+ V +         +   + Y          NCTV    + +
Sbjct: 415 LFHSFGLTVGLFTPLLTGAEVFL---------YPSPLHYRIVPELVYDRNCTVLFGTSTF 465

Query: 304 IGEMC-----------RYLLAVPEKPEDTQHSVKMMIGNGLRPQVWEPFQKRFGLDRICE 352
           +G              RY++A  EK    Q S K         Q+W   Q +FGL RI E
Sbjct: 466 LGNYARFANPYDFARLRYVVAGAEK---LQESTK---------QLW---QDKFGL-RILE 509

Query: 353 FYGATE 358
            YG TE
Sbjct: 510 GYGVTE 515

Length = 718

>gnl|CDD|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase

 Score = 44.8 bits (106), Expect = 9e-05
 Identities = 27/73 (36%), Positives = 37/73 (50%), Gaps = 11/73 (15%)

Query: 196 KSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTH------VRAM--FMAISGRYQTGLT 247
           K    +    KP D    +YTSGT+G PK  V+TH      VR +  FM    +++  +T
Sbjct: 208 KENPSETNPPKPLDICTIMYTSGTSGDPKGVVLTHEAVATFVRGVDLFME---QFEDKMT 264

Query: 248 SDDVVYTTLPLYH 260
            DDV  + LPL H
Sbjct: 265 HDDVYLSFLPLAH 277

Length = 660

>gnl|CDD|236071 PRK07638, PRK07638, acyl-CoA synthetase; Validated

 Score = 44.4 bits (105), Expect = 9e-05
 Identities = 56/296 (18%), Positives = 107/296 (36%), Gaps = 37/296 (12%)

Query: 69  TVTFQ-VEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQ 127
            +T++   +   ++AN+   K   +   +A+ +E + E++ ++ G +  G     ++   
Sbjct: 26  VLTYKDWFESVCKVANWLNEKE-SKNKTIAILLENRIEFLQLFAGAAMAGWTCVPLDIKW 84

Query: 128 RQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLD 187
           +Q  L   + ++    I+        L + +  +                        +D
Sbjct: 85  KQDELKERLAISNADMIVTERYKLNDLPDEEGRV----------------------IEID 122

Query: 188 EELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLT 247
           E    +    PT    +N  +      +TSG+TG PKA +      +       +   + 
Sbjct: 123 EWKRMIEKYLPTYAPIENVQNAPFYMGFTSGSTGKPKAFLRAQQSWLHSFDCNVHDFHMK 182

Query: 248 SDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEM 307
            +D V     L H+   L G    L  G TV +  KF  +         N +V   +  M
Sbjct: 183 REDSVLIAGTLVHSL-FLYGAISTLYVGQTVHLMRKFIPNQVLDKLETENISVMYTVPTM 241

Query: 308 CRYLLAVPEKPEDTQHSVKMMIGNGLRPQVWEPFQK-----RFGLDRICEFYGATE 358
              L       E   + +K +I +G +   WE   K      F   ++ EFYGA+E
Sbjct: 242 LESLYKENRVIE---NKMK-IISSGAK---WEAEAKEKIKNIFPYAKLYEFYGASE 290

Length = 487

>gnl|CDD|182517 PRK10524, prpE, propionyl-CoA synthetase; Provisional

 Score = 44.6 bits (106), Expect = 1e-04
 Identities = 57/195 (29%), Positives = 81/195 (41%), Gaps = 68/195 (34%)

Query: 69  TVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQ 127
           T TF Q+ D  NR+A   +S G+QRGD V ++M    E     L  ++IG          
Sbjct: 84  TYTFRQLHDEVNRMAAMLRSLGVQRGDRVLIYMPMIAEAAFAMLACARIGA--------- 134

Query: 128 RQHILIHSIKVAECKAIIYGAELSEAL-TEVKDSIPGISLYA-AGTRRKPQAKVLPSTTL 185
                IHS        +++G   S +L   + D+ P + + A AG+R     KV+P   L
Sbjct: 135 -----IHS--------VVFGGFASHSLAARIDDAKPVLIVSADAGSR---GGKVVPYKPL 178

Query: 186 LDEEL------PE-----------------------------VSAKSPTEDIKKNKPSDK 210
           LDE +      P                              + A+ P E ++ N+PS  
Sbjct: 179 LDEAIALAQHKPRHVLLVDRGLAPMARVAGRDVDYATLRAQHLGARVPVEWLESNEPS-- 236

Query: 211 LAYI-YTSGTTGLPK 224
             YI YTSGTTG PK
Sbjct: 237 --YILYTSGTTGKPK 249

Length = 629

>gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 44/203 (21%), Positives = 70/203 (34%), Gaps = 62/203 (30%)

Query: 69  TVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQ 127
           ++TF ++++ S+RIA   ++ G+++GD V L +    +   +   L K+G V   I+   
Sbjct: 2   SLTFRELDERSDRIARGLRASGIRKGDRVVLMVPPGADLTALTFALFKVGAVPVLIDPGM 61

Query: 128 RQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLD 187
            +                    L   L E +                P A          
Sbjct: 62  GRK------------------HLGRCLEEAE----------------PDAF--------- 78

Query: 188 EELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTH--VRAMFMAISGRYQTG 245
                         I   K  D  A ++TSG+TG PK  V TH    A   A+   Y  G
Sbjct: 79  --------------IGIPKADDPAAILFTSGSTGPPKGVVYTHRTFAAQIDALRSLY--G 122

Query: 246 LTSDDVVYTTLPLYHTAGGLLGI 268
           +   D      P +   G  LG+
Sbjct: 123 IREGDRDLAAFPPFALFGPALGV 145

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 455

>gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 12/78 (15%)

Query: 180 LPSTTLLDEELPEVSAKSPTEDIKKNKPSDKLAY-IYTSGTTGLPKAAVMTHV----RAM 234
           +P  T L    P   A      ++ ++P    AY I+TSG+TG PK  ++       R +
Sbjct: 572 VPDLTSLCYNAP--LAPQGAAPLQLSQPHH-TAYIIFTSGSTGRPKGVMVGQTAIVNRLL 628

Query: 235 FMAISGRYQTGLTSDDVV 252
           +M    +    LT+DDVV
Sbjct: 629 WM----QNHYPLTADDVV 642

Length = 1296

>gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated

 Score = 43.1 bits (102), Expect = 3e-04
 Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 14/74 (18%)

Query: 216 TSGTTGLPKAAVMTH------VRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAG--GLLG 267
           TSG+TG PKA  +TH        AMF+A     +T     DV+ + LPL+H  G  G L 
Sbjct: 160 TSGSTGSPKAVQITHGNLYANAEAMFVAAEFDVET-----DVMVSWLPLFHDMGMVGFLT 214

Query: 268 IGQCLLGGSTVVIR 281
           +     G   V + 
Sbjct: 215 VPMY-FGAELVKVT 227

Length = 545

>gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase

 Score = 42.9 bits (101), Expect = 3e-04
 Identities = 58/262 (22%), Positives = 105/262 (40%), Gaps = 60/262 (22%)

Query: 64  GAYKYTVTFQVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYV-----CMWLGLS---- 114
           G Y +    +V D + RI +  +S+G+  GD   ++    PE++     C   G++    
Sbjct: 73  GPYVWLTYKEVYDAAIRIGSAIRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQGITYVPL 132

Query: 115 --KIGVVA------------AFINTNQRQHILIHSIKV-AECKAIIYGAELSEALTEVKD 159
              +G  A            AF+  ++   IL    K  +  K I+   ++S    E  +
Sbjct: 133 YDTLGANAVEFIINHAEVSIAFVQESKISSILSCLPKCSSNLKTIVSFGDVSSEQKEEAE 192

Query: 160 SIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTEDIKKNKPSDKLAYIYTSGT 219
            + G+S ++         +       LD ELP            K K +D    +YTSGT
Sbjct: 193 EL-GVSCFSW--------EEFSLMGSLDCELP-----------PKQK-TDICTIMYTSGT 231

Query: 220 TGLPKAAVMTHVRAMFMAISGRYQTGLT-----SDDVVYTTLPLYHTAGGLLGIGQCLLG 274
           TG PK  ++T+   +   +S  +   +T      +D  ++ LPL H    ++    C+  
Sbjct: 232 TGEPKGVILTNRAIIAEVLSTDHLLKVTDRVATEEDSYFSYLPLAHVYDQVIET-YCISK 290

Query: 275 GSTVVIRSKFSASNFWKDCIKY 296
           G+++          FW+  I+Y
Sbjct: 291 GASI---------GFWQGDIRY 303

Length = 660

>gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 42.8 bits (101), Expect = 3e-04
 Identities = 40/216 (18%), Positives = 70/216 (32%), Gaps = 29/216 (13%)

Query: 78  SNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIK 137
           ++R+A   +  G++ GD V + +    E+   +  L ++GV       + R   L     
Sbjct: 63  ADRLAAGLRRLGIKPGDTVLVQLPNVAEFYITFFALLRLGVAPVLALPSHRASELGAFAS 122

Query: 138 VAECKAIIY--------GAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEE 189
             E   +I             +  L     ++  + +                   L   
Sbjct: 123 QIEAALLIVARQHSGFDYRPFARELVAKHPTLRHVIVAGEAE------HPSVLEAALCHP 176

Query: 190 LPEVSAKSPTEDIKKNKPSDKLAYIYTSG-TTGLPKAAVMTHVRAMFMAISGRYQTGLTS 248
               +   P         + ++A+   SG TTG PK    TH    +   +     G   
Sbjct: 177 AGLFTPAPPA-------DAGEVAFFQLSGGTTGTPKLIPRTHNDYYYSVRASAEICGFDQ 229

Query: 249 DDVVYTTLPLYH----TAGGLLGIGQCLLGGSTVVI 280
             V    LP  H    ++ G LG+    L G TVV+
Sbjct: 230 QTVYLCALPAAHNFPLSSPGALGV---FLAGGTVVL 262

Length = 542

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 42.6 bits (100), Expect = 5e-04
 Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 2/85 (2%)

Query: 198  PTEDIKKNKPSDKLAY-IYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTL 256
            P  D       D LAY IYTSG+TG PK   ++H   +    +   +  LT DD V   +
Sbjct: 4683 PAHDPAVRLHPDNLAYVIYTSGSTGRPKGVAVSHGSLVNHLHATGERYELTPDDRVLQFM 4742

Query: 257  PLYHTAGGLLGIGQCLLGGSTVVIR 281
              +   G   G+   L+ G++VVIR
Sbjct: 4743 S-FSFDGSHEGLYHPLINGASVVIR 4766

Length = 5163

>gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases

 Score = 41.0 bits (97), Expect = 0.001
 Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 9/82 (10%)

Query: 69  TVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINT-- 125
           T+T+ ++ +   R+A    + G++ GD VA+  E +PE+V   L +   G V   I    
Sbjct: 5   TITWAELAERVRRLAAGLIALGVKPGDRVAILAENRPEWVIADLAILAAGAVPVPIYPTS 64

Query: 126 --NQRQHILIHSIKVAECKAII 145
              +  +IL  S      + + 
Sbjct: 65  SPEEVAYILNDS----GARVVF 82

This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456

>gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated

 Score = 40.9 bits (96), Expect = 0.001
 Identities = 49/202 (24%), Positives = 86/202 (42%), Gaps = 40/202 (19%)

Query: 89  GLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTN----QRQHILIHSIKVAECKAI 144
            L+ GD +A+ +    +Y     G  + G++   +NTN     R+  + H    +  KA+
Sbjct: 71  DLKPGDRIAVQLPNVLQYPVAVFGAMRAGLIV--VNTNPLYTARE--MEHQFNDSGAKAL 126

Query: 145 IY---GAELSEAL-----------TEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDE-E 189
           +     A L+E +           TEV D +P +         K   K++P+  L    +
Sbjct: 127 VCLANMAHLAEKVLPKTGVKHVIVTEVADMLPPLKRLLINAVVKHVKKMVPAYHLPQAVK 186

Query: 190 LPEVSAKSPTEDIKKNKP-SDKLAYI-YTSGTTGLPKAAVMTH---------VRAMFMAI 238
             +  AK   + + +  P +D +A + YT GTTG+ K A++TH          RA+   +
Sbjct: 187 FNDALAKGAGQPVTEANPQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRAL---M 243

Query: 239 SGRYQTGLTSDDVVYTTLPLYH 260
                 G    +++   LPLYH
Sbjct: 244 GSNLNEGC---EILIAPLPLYH 262

Length = 562

>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated

 Score = 40.7 bits (96), Expect = 0.001
 Identities = 53/237 (22%), Positives = 83/237 (35%), Gaps = 51/237 (21%)

Query: 73  QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCM----------WLGLSKIGVVA-- 120
           Q+ D  +R    F++ GL  GDAVAL    +PE +               L  +G +   
Sbjct: 42  QLADRISRYIQAFEALGLGTGDAVALLSLNRPEVLMAIGAAQLAGLRRTALHPLGSLDDH 101

Query: 121 AFI-NTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIP------GISLYAAGTRR 173
           A++        +++      E         L   +  +K  +       G+ L AA  + 
Sbjct: 102 AYVLEDAGISTLIVDPAPFVE-----RALALLARVPSLKHVLTLGPVPDGVDLLAAAAKF 156

Query: 174 KPQAKVLPSTTLLDEELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRA 233
            P               P V+A  P +              YT GTTG PK  + TH R+
Sbjct: 157 GPA--------------PLVAAALPPDIAGLA---------YTGGTTGKPKGVMGTH-RS 192

Query: 234 MFMAISGRYQTGLTSDDVVY-TTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNF 289
           +      +        D  +    PL H AGG   +   L GG+ +V+  KF  +  
Sbjct: 193 IATMAQIQLAEWEWPADPRFLMCTPLSH-AGGAFFLPTLLRGGTVIVLA-KFDPAEV 247

Length = 524

>gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS)

 Score = 41.1 bits (97), Expect = 0.001
 Identities = 29/104 (27%), Positives = 41/104 (39%), Gaps = 13/104 (12%)

Query: 182 STTLLDEELPEVSAKSPT---EDIKKNKPSDKLAYIYTSGTTGLPKAAVMTH--VRAMFM 236
           +  L       V A       + + K        Y++TSG+TGLPKA + TH  + A   
Sbjct: 143 AALLATPPTAAVDAAFAAVGPDTVAK--------YLFTSGSTGLPKAVINTHRMLCANQA 194

Query: 237 AISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVI 280
            I+  +        V+   LP  HT GG       L  G T+ I
Sbjct: 195 MIAQCWPFLTEEPPVLVDWLPWNHTFGGNHNFNMVLYNGGTLYI 238

Feruloyl-CoA synthetase is an essential enzyme in the feruloyl acid degradation pathway and enables some proteobacteria to grow on media containing feruloyl acid as the sole carbon source. It catalyzes the transfer of CoA to the carboxyl group of ferulic acid, which then forms feruloyl-CoA in the presence of ATP and Mg2. The resulting feruloyl-CoA is further degraded to vanillin and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a subfamily of the adenylate-forming enzymes superfamily. Length = 559

>gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 40.7 bits (96), Expect = 0.001
 Identities = 51/222 (22%), Positives = 87/222 (39%), Gaps = 58/222 (26%)

Query: 73  QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVA----AFINTNQR 128
           Q+    + +A   ++ G++R   +AL ++   ++V   L   + G+V      F +  Q 
Sbjct: 7   QLWQEVDLLAEQLRALGVKR---IALALDNSIDWVIADLACLQAGIVCIPIPHFFSAQQT 63

Query: 129 QHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDE 188
           QH+L  +           GA+L   +++  D+   +    A         + PS      
Sbjct: 64  QHLLNDA-----------GADL--LISDDPDAASALHTPFATLGEDLYIALRPSAN--PV 108

Query: 189 ELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPK------AAVMTHVRAMFMAISGRY 242
           ELP  +AK                  YTSG+TG PK      AA+ T  +++  AI+   
Sbjct: 109 ELPAGTAK----------------ITYTSGSTGQPKGVCLSAAALETVAQSLAEAIAI-- 150

Query: 243 QTGLTSDDVVYTTLPLYHTAGGLL----GIGQCLLGGSTVVI 280
                  +     LPL      LL    G+   LL G+TV++
Sbjct: 151 ----LEPERHLCLLPL----ATLLENIAGVYAPLLMGATVIL 184

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 448

>gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS)

 Score = 40.3 bits (95), Expect = 0.002
 Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 4/47 (8%)

Query: 78  SNRIANFFKSKGLQRGDAVALFMEGQPE-YVCMWLGLSKIGVVAAFI 123
           +N++A+   S G++ GD VAL +E  P  YV + L + K G  AA++
Sbjct: 27  ANKLAHHLISLGVRPGDIVALCLERSPWLYVAI-LAVLKAG--AAYV 70

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447

>gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase, AACS)

 Score = 40.7 bits (96), Expect = 0.002
 Identities = 38/167 (22%), Positives = 63/167 (37%), Gaps = 22/167 (13%)

Query: 80  RIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQR--QHILIHSIK 137
           R+A   +  G++ GD VA ++   PE V   L  + IG  A + + +       ++    
Sbjct: 98  RLAAALRDLGVKPGDRVAGYLPNVPEAVIAMLATASIG--AIWSSCSPDFGVEAVLDRFG 155

Query: 138 VAECKAII------YGA---ELSEALTEVKDSIPGIS---LYAAGTRRKPQAKVLPSTTL 185
             E K +       Y     +  E + E+   +P +    +    +     A +  S   
Sbjct: 156 QIEPKVLFAVDGYVYNGKEHDRREKIAEIVKGLPSLEAVVVVPYLSSDAQPAALKFSALT 215

Query: 186 LDEELPEVSAKSPT-EDIKKNKPSDKLAYI-YTSGTTGLPKAAVMTH 230
           L   L    A     E +  + P     +I Y+SGTTGLPK  V   
Sbjct: 216 LLWSLAGDRAAPLEFERLPFDHP----LWILYSSGTTGLPKCIVHGA 258

AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. AACS is widely distributed in bacteria, archaea and eukaryotes. In bacteria, AACS is known to exhibit an important role in the metabolism of poly-b-hydroxybutyrate, an intracellular reserve of organic carbon and chemical energy by some microorganisms. In mammals, AACS influences the rate of ketone body utilization for the formation of physiologically important fatty acids and cholesterol. Length = 616

>gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated

 Score = 40.5 bits (95), Expect = 0.002
 Identities = 55/206 (26%), Positives = 87/206 (42%), Gaps = 26/206 (12%)

Query: 73  QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINT----NQR 128
             E  + ++A    + G++ GD V         ++  + G+S  G V   IN      Q 
Sbjct: 44  DCERRAKQLAQALAALGVEPGDRVGTLAWNGYRHLEAYYGVSGSGAVCHTINPRLFPEQI 103

Query: 129 QHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLP--STTLL 186
            +I+ H    AE + +++       +  +    P +  + A T     A  LP  ST LL
Sbjct: 104 AYIVNH----AEDRYVLFDLTFLPLVDALAPQCPNVKGWVAMTDA---AH-LPAGSTPLL 155

Query: 187 D-EELPEVSAKSPTED---IKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRY 242
             E L  V A+    D     +N+ S   +  YTSGTTG PK A+ +H   +  A     
Sbjct: 156 CYETL--VGAQDGDYDWPRFDENQAS---SLCYTSGTTGNPKGALYSHRSTVLHAYGAAL 210

Query: 243 --QTGLTSDDVVYTTLPLYH-TAGGL 265
               GL++ D V   +P++H  A GL
Sbjct: 211 PDAMGLSARDAVLPVVPMFHVNAWGL 236

Length = 539

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 40.2 bits (94), Expect = 0.003
 Identities = 43/185 (23%), Positives = 77/185 (41%), Gaps = 34/185 (18%)

Query: 73   QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTN-----Q 127
            +++  +NR+A   + +G+     V L +E   E V   L + K G   A++  +     +
Sbjct: 2218 ELDARANRLARALRERGVGPQVRVGLALERSLEMVVGLLAILKAG--GAYVPLDPEYPLE 2275

Query: 128  RQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLD 187
            R H +I    +     ++    L EAL E+   +    L                    +
Sbjct: 2276 RLHYMIEDSGIG---LLLSDRALFEALGELPAGVARWCL--------------------E 2312

Query: 188  EELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVR-AMF-MAISGRYQTG 245
            ++   ++A S       + P  +   IYTSG+TG PK  V++H   AM   A+  R+  G
Sbjct: 2313 DDAAALAAYSDAPLPFLSLPQHQAYLIYTSGSTGKPKGVVVSHGEIAMHCQAVIERF--G 2370

Query: 246  LTSDD 250
            + +DD
Sbjct: 2371 MRADD 2375

Length = 4334

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 39.9 bits (93), Expect = 0.003
 Identities = 39/161 (24%), Positives = 61/161 (37%), Gaps = 27/161 (16%)

Query: 73  QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHIL 132
           ++   +NR+A+    +G+     V + ME   E V   L + K G   A++  +      
Sbjct: 541 ELNRRANRLAHALIERGVGPDVLVGVAMERSIEMVVALLAILKAG--GAYVPLDPE---- 594

Query: 133 IHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTT--LLDEEL 190
                        Y AE    + E  DS  G+ L  + +    +  +        LD   
Sbjct: 595 -------------YPAERLAYMLE--DS--GVQLLLSQSHLGRKLPLAAGVQVLDLDRPA 637

Query: 191 PEVSAKSPTEDIKKNKPSDKLAY-IYTSGTTGLPKAAVMTH 230
             +   S  E+       + LAY IYTSG+TG PK A   H
Sbjct: 638 AWLEGYS-EENPGTELNPENLAYVIYTSGSTGKPKGAGNRH 677

Length = 5163

>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS)

 Score = 39.3 bits (93), Expect = 0.004
 Identities = 18/56 (32%), Positives = 37/56 (66%), Gaps = 3/56 (5%)

Query: 69  TVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFI 123
           ++T+ ++ + +NR+A++ +++G+  GD VA+ +E  PE V   L + K G  AA++
Sbjct: 12  SLTYRELNERANRLAHYLRARGVGPGDLVAICLERSPEMVVAILAVLKAG--AAYV 65

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445

>gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase

 Score = 39.6 bits (92), Expect = 0.004
 Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 5/65 (7%)

Query: 201 DIKKNKPSDKLAYIYTSGTTGLPKAAVMTH-----VRAMFMAISGRYQTGLTSDDVVYTT 255
           D+   K SD    +YTSGTTG PK  ++++     + A  + +       LT  DV  + 
Sbjct: 216 DLPIKKKSDICTIMYTSGTTGDPKGVMISNESIVTLIAGVIRLLKSANAALTVKDVYLSY 275

Query: 256 LPLYH 260
           LPL H
Sbjct: 276 LPLAH 280

Length = 666

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	479
KOG1179|consensus	649		100.0
KOG1176|consensus	537		100.0
KOG1177|consensus	596		100.0
COG0318	534	CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l	100.0
COG0365	528	Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l	100.0
PTZ00342	746	acyl-CoA synthetase; Provisional	100.0
PLN02614	666	long-chain acyl-CoA synthetase	100.0
PLN02736	651	long-chain acyl-CoA synthetase	100.0
COG1022	613	FAA1 Long-chain acyl-CoA synthetases (AMP-forming)	100.0
PLN02861	660	long-chain-fatty-acid-CoA ligase	100.0
KOG1256|consensus	691		100.0
PLN02387	696	long-chain-fatty-acid-CoA ligase family protein	100.0
PRK06334	539	long chain fatty acid--[acyl-carrier-protein] liga	100.0
PRK08279	600	long-chain-acyl-CoA synthetase; Validated	100.0
PF00501	417	AMP-binding: AMP-binding enzyme; InterPro: IPR0008	100.0
PRK07788	549	acyl-CoA synthetase; Validated	100.0
TIGR02316	628	propion_prpE propionate--CoA ligase. This family c	100.0
PLN02654	666	acetate-CoA ligase	100.0
PRK07529	632	AMP-binding domain protein; Validated	100.0
PTZ00237	647	acetyl-CoA synthetase; Provisional	100.0
TIGR02188	625	Ac_CoA_lig_AcsA acetate--CoA ligase. This model de	100.0
PLN02860	563	o-succinylbenzoate-CoA ligase	100.0
PTZ00216	700	acyl-CoA synthetase; Provisional	100.0
PRK08314	546	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK00174	637	acetyl-CoA synthetase; Provisional	100.0
PLN02430	660	long-chain-fatty-acid-CoA ligase	100.0
PRK13295	547	cyclohexanecarboxylate-CoA ligase; Reviewed	100.0
PLN02246	537	4-coumarate--CoA ligase	100.0
PRK04319	570	acetyl-CoA synthetase; Provisional	100.0
PRK08180	614	feruloyl-CoA synthase; Reviewed	100.0
PRK10524	629	prpE propionyl-CoA synthetase; Provisional	100.0
PLN02574	560	4-coumarate--CoA ligase-like	100.0
PRK05605	573	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK06155	542	crotonobetaine/carnitine-CoA ligase; Provisional	100.0
PRK13382	537	acyl-CoA synthetase; Provisional	100.0
PRK07656	513	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK06839	496	acyl-CoA synthetase; Validated	100.0
COG1021	542	EntE Peptide arylation enzymes [Secondary metaboli	100.0
PRK09274	552	peptide synthase; Provisional	100.0
TIGR02275	527	DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot	100.0
PRK07638	487	acyl-CoA synthetase; Validated	100.0
PLN02330	546	4-coumarate--CoA ligase-like 1	100.0
PRK08316	523	acyl-CoA synthetase; Validated	100.0
PRK05852	534	acyl-CoA synthetase; Validated	100.0
PRK08008	517	caiC putative crotonobetaine/carnitine-CoA ligase;	100.0
TIGR03208	538	cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase.	100.0
PRK05677	562	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK05857	540	acyl-CoA synthetase; Validated	100.0
PLN03052	728	acetate--CoA ligase; Provisional	100.0
PRK12582	624	acyl-CoA synthetase; Provisional	100.0
PLN03102	579	acyl-activating enzyme; Provisional	100.0
PRK13388	540	acyl-CoA synthetase; Provisional	100.0
PRK07514	504	malonyl-CoA synthase; Validated	100.0
PRK07769	631	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK07867	529	acyl-CoA synthetase; Validated	100.0
PRK08315	559	AMP-binding domain protein; Validated	100.0
PRK06087	547	short chain acyl-CoA synthetase; Reviewed	100.0
PRK06187	521	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK06178	567	acyl-CoA synthetase; Validated	100.0
PRK03640	483	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
TIGR03098	515	ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor	100.0
PRK06060	705	acyl-CoA synthetase; Validated	100.0
PRK08043	718	bifunctional acyl-[acyl carrier protein] synthetas	100.0
PRK06145	497	acyl-CoA synthetase; Validated	100.0
PRK12583	558	acyl-CoA synthetase; Provisional	100.0
PRK07470	528	acyl-CoA synthetase; Validated	100.0
PRK12476	612	putative fatty-acid--CoA ligase; Provisional	100.0
KOG1180|consensus	678		100.0
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	100.0
PRK07786	542	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK06188	524	acyl-CoA synthetase; Validated	100.0
PRK03584	655	acetoacetyl-CoA synthetase; Provisional	100.0
PRK06164	540	acyl-CoA synthetase; Validated	100.0
PRK12492	562	long-chain-fatty-acid--CoA ligase; Provisional	100.0
PRK10946	536	entE enterobactin synthase subunit E; Provisional	100.0
TIGR01217	652	ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym	100.0
PRK07059	557	Long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK07868	994	acyl-CoA synthetase; Validated	100.0
TIGR02262	508	benz_CoA_lig benzoate-CoA ligase family. Character	100.0
PRK07008	539	long-chain-fatty-acid--CoA ligase; Validated	100.0
TIGR03205	541	pimA dicarboxylate--CoA ligase PimA. PimA, a membe	100.0
PRK09088	488	acyl-CoA synthetase; Validated	100.0
PLN02479	567	acetate-CoA ligase	100.0
PRK10252	1296	entF enterobactin synthase subunit F; Provisional	100.0
TIGR03443	1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	100.0
PRK05620	576	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK06710	563	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK08751	560	putative long-chain fatty acyl CoA ligase; Provisi	100.0
PRK06018	542	putative acyl-CoA synthetase; Provisional	100.0
PRK12467	3956	peptide synthase; Provisional	100.0
PRK13383	516	acyl-CoA synthetase; Provisional	100.0
PRK05851	525	long-chain-fatty-acid--[acyl-carrier-protein] liga	100.0
PRK08162	545	acyl-CoA synthetase; Validated	100.0
TIGR01734	502	D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig	100.0
PRK12316	5163	peptide synthase; Provisional	100.0
PRK05850	578	acyl-CoA synthetase; Validated	100.0
PRK08974	560	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK12467	3956	peptide synthase; Provisional	100.0
PRK12316	5163	peptide synthase; Provisional	100.0
PRK07787	471	acyl-CoA synthetase; Validated	100.0
PRK13390	501	acyl-CoA synthetase; Provisional	100.0
PRK07798	533	acyl-CoA synthetase; Validated	100.0
PRK04813	503	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
PRK05691	4334	peptide synthase; Validated	100.0
TIGR01733	408	AA-adenyl-dom amino acid adenylation domain. This	100.0
PRK09192	579	acyl-CoA synthetase; Validated	100.0
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	100.0
PRK05691	4334	peptide synthase; Validated	100.0
KOG1175|consensus	626		100.0
PRK13391	511	acyl-CoA synthetase; Provisional	100.0
PRK08276	502	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK07768	545	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK12406	509	long-chain-fatty-acid--CoA ligase; Provisional	100.0
PRK07445	452	O-succinylbenzoic acid--CoA ligase; Reviewed	100.0
PLN03051	499	acyl-activating enzyme; Provisional	100.0
PRK09029	458	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
TIGR01923	436	menE O-succinylbenzoate-CoA ligase. This model rep	100.0
PRK08308	414	acyl-CoA synthetase; Validated	100.0
PTZ00297	1452	pantothenate kinase; Provisional	100.0
COG1020	642	EntF Non-ribosomal peptide synthetase modules and	100.0
PRK07824	358	O-succinylbenzoic acid--CoA ligase; Provisional	99.97
TIGR02372	386	4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv	99.96
TIGR02155	422	PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet	99.95
TIGR03089	227	conserved hypothetical protein TIGR03089. This pro	99.95
KOG3628|consensus	1363		99.94
TIGR03335	445	F390_ftsA coenzyme F390 synthetase. This enzyme, c	99.91
COG1541	438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	99.81
KOG1178|consensus	1032		99.8
KOG3628|consensus	1363		99.66
TIGR02304	430	aden_form_hyp probable adenylate-forming enzyme. M	99.41
PF04443	365	LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR	99.18
PRK09188	365	serine/threonine protein kinase; Provisional	97.67
PF03321	528	GH3: GH3 auxin-responsive promoter; InterPro: IPR0	97.28
PLN02249	597	indole-3-acetic acid-amido synthetase	95.8
PLN02247	606	indole-3-acetic acid-amido synthetase	95.52
PLN02620	612	indole-3-acetic acid-amido synthetase	94.91
COG1541	438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	94.44
KOG1177|consensus	596		86.93
TIGR02155	422	PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet	86.26
TIGR03335	445	F390_ftsA coenzyme F390 synthetase. This enzyme, c	85.04
KOG1179|consensus	649		82.46

>KOG1179|consensus

Probab=100.00  E-value=1.6e-63  Score=464.44  Aligned_cols=432  Identities=52%  Similarity=0.904  Sum_probs=389.1

Q ss_pred             hhcccchhHHHHHHHhhcCCCccccEEE-----Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhh
Q psy8225          42 QKTLPTYARPLFVRTIREVPMTGAYKYT-----VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSK  115 (479)
Q Consensus        42 ~~~~~~~l~~~l~~~~~~~p~~~a~~~~-----~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~  115 (479)
                      .+..+.++.++|..+++++|+++|+++.     +|| |+.+++.++|+.|..+|++.||.||+.|+|.+||+.+.||+++
T Consensus        72 ~rr~~~ti~~~F~~~vrr~p~k~aii~~~~~~~~Tf~e~~~~s~~~A~~~~~~~l~~GD~VAL~men~pefv~lWlGLaK  151 (649)
T KOG1179|consen   72 SRRERRTIAELFLSQVRRQPDKPAIIYEGPFQSLTFAELDARSNRVANYLHAEGLKAGDVVALLMENRPEFVALWLGLAK  151 (649)
T ss_pred             hhccCCcHHHHHHHHHHhCCCccEEEEeCCCceeeHHHHHHHHHHHHHHHHHhhcccCCEEEEecCCChhHHHHHHhHHh
Confidence            4456688999999999999999999998     999 9999999999999999999999999999999999999999999


Q ss_pred             cCceeeeecCCcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCC--cceEEecCCCCCCCccCCCccccccccCCcC
Q psy8225         116 IGVVAAFINTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIP--GISLYAAGTRRKPQAKVLPSTTLLDEELPEV  193 (479)
Q Consensus       116 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (479)
                      +|++...||+++..+.|.|.++.++++++|++.+..+.+.++.+...  .+..+..+...     .+.+..++.+.++..
T Consensus       152 lGv~tA~iNtNlR~~~LlHsi~~s~aralv~~~el~~~~~e~~~~l~~~~i~~~~~~~~~-----~~~g~~~L~~~l~~~  226 (649)
T KOG1179|consen  152 LGVITAFINTNLRGEPLLHSITVSGARALVVGPELLNALEEILPLLIKNGIHVFSLGPTS-----VPDGIESLLAKLSAA  226 (649)
T ss_pred             hCceeeeeccccccchhhhhhhhcCceEEEECHHHHHHHHhcchhhhhccceEEecCCCC-----CCchHHHHHHhhccc
Confidence            99999999999999999999999999999999999888777744433  34555554322     123455566666555


Q ss_pred             CCCCCc-ccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcCCCCCCeEEEeccchhhhhhHHHHHHHH
Q psy8225         194 SAKSPT-EDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCL  272 (479)
Q Consensus       194 ~~~~~~-~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l  272 (479)
                      ...+.+ .........++++.+|||||||.||+.+++|..+...+..+...++++++|+++.++|++|.+|.+.++..++
T Consensus       227 ~~~~vp~~~~~~~~~~s~~lyIYTSGTTGLPKaAvith~r~~~~a~g~~~~~g~~~~DvvY~~lPLYHsaa~ilGi~~~l  306 (649)
T KOG1179|consen  227 PKHPVPVSTRSGLTFRSPLLYIYTSGTTGLPKAAVITHLRYLQGAAGFYYVFGMTADDVVYTTLPLYHSAAGILGIGGCL  306 (649)
T ss_pred             ccCCCCcccCCCccccceeEEEEcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCccceEEEcchhHHHHHHHHHHHHHH
Confidence            554422 2235567788999999999999999999999999888887888899999999999999999999999999999


Q ss_pred             hcCceEEecCCCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEEecCCChhhHHHHHHHhCcceeee
Q psy8225         273 LGGSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMIGNGLRPQVWEPFQKRFGLDRICE  352 (479)
Q Consensus       273 ~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~G~~l~~~~~~~~~~~~~~~~v~~  352 (479)
                      ..|+++++..+|+...+|+...+|+||++.-.--+++.|++++..+....+++|+..|..+.++++++|.++||..++.+
T Consensus       307 ~~GaT~VlrkKFSAS~FW~DC~k~~~Tv~QYIGElcRYLl~~p~~~~er~HkVRla~GNGLR~diW~~Fv~RFg~~~IgE  386 (649)
T KOG1179|consen  307 LHGATVVLRKKFSASNFWDDCRKYNVTVIQYIGELCRYLLNQPPSPEERQHKVRLAYGNGLRPDIWQQFVKRFGIIKIGE  386 (649)
T ss_pred             hcCceEEEecccchhhhHHHHHHhCCeeeehHHHHHHHHHcCCCChhhcCceEEEEecCCCCchHHHHHHHHcCCCeEEE
Confidence            99999999999999999999999999999999999999999999988889999999999999999999999999988999


Q ss_pred             eccccccCcccccCCCCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCccccccc
Q psy8225         353 FYGATEGNANLMNADGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNG  432 (479)
Q Consensus       353 ~YG~tE~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~g  432 (479)
                      .||+||......+.+.+.|.+|+.....+-+.+++++.+|+++|++++|++|.|++|++||+|.++.++....|..-|.|
T Consensus       387 ~YgaTEgn~~~~N~d~~vGA~G~~~~~~~~l~p~~LIk~D~~t~E~iRd~~G~Ci~~~~GEpGlLv~~i~~k~P~~~F~G  466 (649)
T KOG1179|consen  387 FYGATEGNSNLVNYDGRVGACGFMSRLLKLLYPFRLIKVDPETGEPIRDSQGLCIPCPPGEPGLLVGKIVQKNPLRSFLG  466 (649)
T ss_pred             EeccccCcceeeeecCccccccchhhhhhhccceEEEEecCCCCceeecCCceEEECCCCCCceEEEEeccCCchhhhcc
Confidence            99999999999999999999998766667777899999999999999999999999999999999999888888777999


Q ss_pred             ccC-cchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCC
Q psy8225         433 YAD-KKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDA  478 (479)
Q Consensus       433 Y~~-~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~  478 (479)
                      |.+ ..++.++..+++|..||-||.|||+-..|+.|+|||.+|.-|+
T Consensus       467 Y~g~~~~t~kKl~rDVFkkGD~~f~tGDlLv~D~~GylYF~DRtGDT  513 (649)
T KOG1179|consen  467 YAGPKKATEKKLLRDVFKKGDVYFNTGDLLVADELGYLYFKDRTGDT  513 (649)
T ss_pred             ccCchhhhhhhhHHhhhccCcEEEeeCcEEEEecCCcEEEeccCCCc
Confidence            999 5777889999999999999999999999999999999999886

>KOG1176|consensus

Probab=100.00  E-value=1.4e-62  Score=481.10  Aligned_cols=384  Identities=25%  Similarity=0.372  Sum_probs=321.3

Q ss_pred             cccEEE------Eeh-hhHHHHHHHHHHHHHcC--CCCCCEEEEEcCCchHHHHHHHHhhhcCceeeeecCCcchHHHHH
Q psy8225          64 GAYKYT------VTF-QVEDHSNRIANFFKSKG--LQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIH  134 (479)
Q Consensus        64 ~a~~~~------~Ty-~l~~~~~~la~~L~~~g--i~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~  134 (479)
                      +++++.      +|| |+.+++.++|.+|.++|  +++||+|++++||+++++++++||.+.|++..++||.+.+.++.+
T Consensus        34 ~~~i~~~~~g~~~T~~e~~~~~~r~A~~L~~~~~~i~~gDvV~i~~pNs~~~~~~~la~~~~Ga~~~~~Np~~~~~ei~~  113 (537)
T KOG1176|consen   34 TSLVYQDSDGRELTYSELHDRCRRLASALSELGLGIKKGDVVGILAPNTPEFVELALAVPMAGAVLNPLNPRLTASEIAK  113 (537)
T ss_pred             ceEEEecCCCcEEcHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEEcCCCHHHHHHHHHHHHcCccccccCcccCHHHHHH
Confidence            666655      999 99999999999999875  899999999999999999999999999999999999999999999


Q ss_pred             HHHhccceEEEeChhhHHHHHHhhccCCcceEEecCCCCC--CCccCCCccccccccCCcCCCCCCcccccCCCCCCcEE
Q psy8225         135 SIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRK--PQAKVLPSTTLLDEELPEVSAKSPTEDIKKNKPSDKLA  212 (479)
Q Consensus       135 ~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (479)
                      +++.++++++|++....+.+.++...+. .+++++.....  ...........+..+........    ......+++++
T Consensus       114 ~~~~s~~kiif~d~~~~~~i~~~~~~~~-~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~dd~~~  188 (537)
T KOG1176|consen  114 QLKDSKPKLIFVDEDFYDKISEATSKLA-LKIIVLTGDEGVISISDLVEDLDAFEDLMPEGLPDG----IRPVSEDDTAA  188 (537)
T ss_pred             HHHhcCCeEEEEcCchHHHHHHHHhhcC-CceEEEecccCccccccccccccchhhccccCCCcc----cccCCCCCeEE
Confidence            9999999999999999988877766554 44444433210  00000000111333332222221    25567799999


Q ss_pred             EEEccCCCCCcceEEeehHHHHHHhhhhhhhcCCCCCCeEEEeccchhhhhhHHHHHHHHhcCceEEecCCCChhHHHHH
Q psy8225         213 YIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFWKD  292 (479)
Q Consensus       213 i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~  292 (479)
                      ++|||||||.||||++||++++.+.........+...++.++.+|++|.+|+...+...+..|++++....|++..+++.
T Consensus       189 il~SSGTTg~PKgV~lsHr~~~~~~~~~~~~~~~~~~~v~l~~lPl~H~~Gl~~~~~~~~~~~~~ii~~~~f~~~~~~~~  268 (537)
T KOG1176|consen  189 ILYSSGTTGLPKGVVLSHRNLIANTLSIKIGWELTSDDVYLCTLPLFHIYGLITLLLSLLAGGTTIICLRKFDAELFLDL  268 (537)
T ss_pred             EecCCCCCCCCceEEEecHHHHHHHHHhhhcccCCCCceEEEechHHHHhHHHHHHHHHHhCCceEEECCCCCHHHHHHH
Confidence            99999999999999999999998888777677777899999999999999998777778888889999999999999999


Q ss_pred             HHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEE--ecCCChhhHHHHHHHhCcceeeeeccccccCcccc-c-C-C
Q psy8225         293 CIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFYGATEGNANLM-N-A-D  367 (479)
Q Consensus       293 i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~--G~~l~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~-~-~-~  367 (479)
                      +++|++|++..+|.++..|++.+.....+++++|.+.  |+++++++.+++.+.+|...+.+.|||||+++.++ + . +
T Consensus       269 i~kykvt~~~~vP~~~~~l~~~p~~~~~~l~sl~~v~~gga~~~~~~~~~~~~~l~~~~v~q~YGmTE~~~~~~~~~~~~  348 (537)
T KOG1176|consen  269 IEKYKVTHLFLVPPVLNMLAKSPIVKKYDLSSLRSVLSGGAPLSPATLEKVKERLPNVTVIQGYGMTEAGGLITSNDWGP  348 (537)
T ss_pred             HHHhCEEEEEcChHHHHHHhcCCccCcccCCccEEEEecCCCCCHHHHHHHHHhCCCceEEEeeccccccCceeecCCCc
Confidence            9999999999999999999999877778899999985  88899999999999999549999999999995554 2 2 2


Q ss_pred             -CCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCcccccccccCcchhHHHHHhh
Q psy8225         368 -GKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNGYADKKASEKKILRN  446 (479)
Q Consensus       368 -~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~gY~~~~~~~~~~~~~  446 (479)
                       .+++++|++++      ++++++.+ ++|+          .+++++.||||+|    |+ ++|.||+++|+.|++.+++
T Consensus       349 e~k~~svG~~~~------g~~~~v~~-e~g~----------~l~~~~~GEI~vr----g~-~imkGY~~NpeaT~~~~~~  406 (537)
T KOG1176|consen  349 ERKPGSVGRLLP------GVRVKVLD-ETGV----------SLGPNQTGEICVR----GP-QVMKGYLKNPEATKEAFDD  406 (537)
T ss_pred             cCcccccCcccc------ceEEEeeC-CCCC----------CCCCCCceEEEEE----Cc-ccchhhcCChHHHHhhccc
Confidence             27899999776      57776555 6666          5689999999999    77 9999999999999987762


Q ss_pred             hccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         447 VYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       447 ~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                           +|||+|||+||+|+||+|+|+||+||+.
T Consensus       407 -----~GW~~TGDiGy~D~DG~l~IvdR~KdlI  434 (537)
T KOG1176|consen  407 -----DGWFHTGDLGYFDEDGYLYIVDRSKDLI  434 (537)
T ss_pred             -----CCccccCceEEEcCCCeEEEecchhhhe
Confidence                 5999999999999999999999999984

>KOG1177|consensus

Probab=100.00  E-value=3.8e-62  Score=446.14  Aligned_cols=402  Identities=24%  Similarity=0.339  Sum_probs=338.7

Q ss_pred             chhHHHHHHHhhcCCCccccEEE-----Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCcee
Q psy8225          47 TYARPLFVRTIREVPMTGAYKYT-----VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVA  120 (479)
Q Consensus        47 ~~l~~~l~~~~~~~p~~~a~~~~-----~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~  120 (479)
                      .|++++++-.++.-||+.|.++.     +|| |+.+.++++|.+|...|+++||||++..||+.+|+..+|||.++|.+.
T Consensus        50 ~Tigq~l~~~t~~v~dkea~Vf~~eg~R~Tf~~~~~ev~slAaGll~lGL~kGDrVgvwgpN~~~w~l~~lA~A~AG~v~  129 (596)
T KOG1177|consen   50 ETIGQLLETTTERVPDKEAAVFDHEGIRLTFSEFVSEVESLAAGLLSLGLKKGDRVGVWGPNSYEWVLCQLACARAGLVL  129 (596)
T ss_pred             ccHHHHHHHHhhccCcceEEEEeeccchhhHHHHHHHHHHHHhhHHhhcCCCCCEEEEecCChHHHHHHHHHHHHhceEE
Confidence            67999999999999999999998     999 999999999999999999999999999999999999999999999999


Q ss_pred             eeecCCcchHHHHHHHHhccceEEEeChhh-----HHHHHHhhc-------------cCCcceEEecCCCCCCCccCCCc
Q psy8225         121 AFINTNQRQHILIHSIKVAECKAIIYGAEL-----SEALTEVKD-------------SIPGISLYAAGTRRKPQAKVLPS  182 (479)
Q Consensus       121 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~-----~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~  182 (479)
                      +++||.+..+|++..|++.+++++|+...+     .+.++++..             .+|.++-++..+++.+    ..+
T Consensus       130 v~~NP~Yq~~elr~~L~k~~~k~l~~p~~~k~~ny~~~l~~icPEv~~~~~G~lkS~~lp~lthvi~~~ed~~----~~G  205 (596)
T KOG1177|consen  130 VNLNPAYQSEELRYVLKKVGCKALFAPPQFKTQNYYETLLEICPEVMRGDPGQLKSELLPELTHVILADEDHP----LPG  205 (596)
T ss_pred             eccCcccccHHHHHHHhhcCeEEEEccchhhhchHHHHHHHhhHHhhcCCCccccccccccceEEEecCCCCc----CCC
Confidence            999999999999999999999999987542     233333322             1223333333332211    134


Q ss_pred             cccccccCCcCCCCCCccc---ccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcCCCCCCeEEEeccch
Q psy8225         183 TTLLDEELPEVSAKSPTED---IKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLY  259 (479)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~  259 (479)
                      ...+++++..+........   .....+++.+.|.|||||||.|||+.+||.++++++......+++..++++++..|++
T Consensus       206 a~~~sev~~~~s~~~~a~l~~~~k~~~pdd~~niQFTSGTTG~PKgatLsH~~~~Nna~~vg~r~g~~e~~~i~~~~Pl~  285 (596)
T KOG1177|consen  206 AFLLSEVLKAASKEERAKLADMSKWLSPDDAVNIQFTSGTTGAPKGATLSHYNFLNNARAVGARAGYNEKHRICIPNPLY  285 (596)
T ss_pred             ceehHHHHHhcchHHHHHHHhhhhhcCCCCceEEEeccCCCCCCcceeeehhhhhhhHHHHHHHhCcCcceEEEecCchH
Confidence            4556666655443221111   1445679999999999999999999999999999999988899999999999999999


Q ss_pred             hhhhhHHHHHHHHhcCceEEecC-CCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEE--ecCCChh
Q psy8225         260 HTAGGLLGIGQCLLGGSTVVIRS-KFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQ  336 (479)
Q Consensus       260 h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~--G~~l~~~  336 (479)
                      |.+|...+.++++..|++++++. .|++...+++|+++++|.++.+|+++..|++.+.....+++++|..+  |++++++
T Consensus       286 H~~G~~~~~ma~l~~gat~Vfp~~~f~~k~alqai~~ekcT~l~gtPtM~~Dlln~~~~~~~~~s~lr~~vigGa~~s~e  365 (596)
T KOG1177|consen  286 HCFGCVLGVMAALMHGATIVFPAPSFDPKDALQAISNEKCTTLYGTPTMFVDLLNIPQKQQVDLSSLRKGVIGGAPVSPE  365 (596)
T ss_pred             HHHHHHHHHHHHHHhCcEEEeeCCCCChHHHHHHHHhhceEEEecChHHHHHHhcchhhccCchhhhhhheeCCCCCCHH
Confidence            99999999999999999999964 79999999999999999999999999999999999999999999765  8999999


Q ss_pred             hHHHHHHHhCcceeeeeccccccCcccccC------CCCCCcccccCccccCCCceeeEEeCCCCCCccccCCCcccccc
Q psy8225         337 VWEPFQKRFGLDRICEFYGATEGNANLMNA------DGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCK  410 (479)
Q Consensus       337 ~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~------~~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~  410 (479)
                      +++.+........+...||+||++++++..      .....++|+.++      +.+..++|.+ |.          +++
T Consensus       366 Llk~iv~~~~m~~i~v~YG~TEts~v~~~~~~~D~~~~~~ksVG~~m~------h~Ea~iv~~~-g~----------~v~  428 (596)
T KOG1177|consen  366 LLKLIVNQMNMKDIAVAYGLTETSPVLFMSLLGDPPEERIKSVGHLMD------HYEAAIVDKD-GS----------EVP  428 (596)
T ss_pred             HHHHHHHhhCceeeEEEeeccccCcceeeecCCCCHHHHHhhhhhccc------ccccccccCC-CC----------ccc
Confidence            999999988876788899999999776521      134467777655      6888888844 44          457


Q ss_pred             CCCCceEEEEeecCCcccccccccCcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         411 AEEPGILIGMIKESRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       411 ~~~~Gel~v~~~~~~~~~~~~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                      .|..|||++|    |. +.|.|||++++.+++...+     |+||+|||+|.+|++|+++|+||.|||.
T Consensus       429 ~~~~Gel~iR----GY-~tMl~Ywg~~~kT~eti~~-----drW~~TGDi~~m~enG~i~iVGRskdmI  487 (596)
T KOG1177|consen  429 LGTKGELLIR----GY-STMLGYWGEEEKTKETIGN-----DRWYDTGDIAVMDENGTIEIVGRSKDMI  487 (596)
T ss_pred             cCCCceEEEE----ec-hhheeecCCcccchhhccc-----ccceecCceEEEcCCCcEEEEEcccCeE
Confidence            8889999999    77 9999999998888876653     8999999999999999999999999984

>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=1.5e-60  Score=483.04  Aligned_cols=400  Identities=29%  Similarity=0.402  Sum_probs=332.7

Q ss_pred             ccchhHHHHHHHhhcCCCccccEEE-----Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCc
Q psy8225          45 LPTYARPLFVRTIREVPMTGAYKYT-----VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGV  118 (479)
Q Consensus        45 ~~~~l~~~l~~~~~~~p~~~a~~~~-----~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~  118 (479)
                      .+.++.++|.++++.+|+++|+++.     +|| ||.++++++|..|++.|+++||+|+|+++|++++++++|||+++|+
T Consensus         9 ~~~~~~~~l~~~a~~~~~~~a~~~~~~~~~~Ty~el~~~~~~~A~~L~~~~v~~gdrVail~~N~~e~~~~~~a~~~~Ga   88 (534)
T COG0318           9 AELTLASLLERAARRNPDRPALIFLGRGGRLTYRELDRRANRLAAALQALGVKPGDRVAILLPNSPEFLIAFLAALRAGA   88 (534)
T ss_pred             ccccHHHHHHHHHHhCCCceEEEEcCCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcCE
Confidence            4567999999999999999999996     999 9999999999999999999999999999999999999999999999


Q ss_pred             eeeeecCCcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCCcceEEecCCCCCCCccCCCcc-ccccccCCcCCCCC
Q psy8225         119 VAAFINTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPST-TLLDEELPEVSAKS  197 (479)
Q Consensus       119 ~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  197 (479)
                      +++|+||.+...++.++++.+++++++++.++...........+....+........      .. ..++..........
T Consensus        89 v~vpln~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~  162 (534)
T COG0318          89 VAVPLNPRLTPRELAYILNDAGAKVLITSAEFAALLEAVAEALPVVLVVLLVGDADD------RLPITLEALAAEGPGPD  162 (534)
T ss_pred             EEeecCcccCHHHHHHHHHhcCCeEEEEcccchhHHHHHhccCCcceEEEecccccc------cccccHHHHhhccCCcc
Confidence            999999999999999999999999999998755555555443332222222211100      00 12333322211111


Q ss_pred             CcccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcC--CCCCCeEEEeccchhhhhhHHHHHHHHhcC
Q psy8225         198 PTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTG--LTSDDVVYTTLPLYHTAGGLLGIGQCLLGG  275 (479)
Q Consensus       198 ~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~--~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G  275 (479)
                      ...  ....++++++++|||||||.||||++||+|+..+.......+.  ++..|++++++|++|.+|+...+..++..|
T Consensus       163 ~~~--~~~~~~d~a~i~yTSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~Gl~~~~~~~~~~G  240 (534)
T COG0318         163 ADA--RPVDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAALGGGLTPDDVVLSWLPLFHIFGLIVGLLAPLLGG  240 (534)
T ss_pred             ccc--CCCCCCCEEEEEeCCCCCCCCCEeEEecHhHHHHHHHHHHHhcccCCCCceEEEecChHHHHHHHHHHHHHHHcC
Confidence            111  2256899999999999999999999999999999888888888  899999999999999999988888889999


Q ss_pred             ceEEecC--CCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCc-eeEEE--ecCCChhhHHHHHHHhCccee
Q psy8225         276 STVVIRS--KFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHS-VKMMI--GNGLRPQVWEPFQKRFGLDRI  350 (479)
Q Consensus       276 ~~~v~~~--~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~-lr~~~--G~~l~~~~~~~~~~~~~~~~v  350 (479)
                      +++++.+  .|++..++..+.++++|++..+|+++..|++........+.+ +|.++  |++++++++++|++.|+...+
T Consensus       241 ~~~v~~~~~~f~~~~~~~~i~~~~~t~~~~vPt~~~~ll~~~~~~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i  320 (534)
T COG0318         241 GTLVLLSPEPFDPEEVLWLIEKYKVTVLSGVPTFLRELLDNPEKDDDDLSSSLRLVLSGGAPLPPELLERFEERFGPIAI  320 (534)
T ss_pred             CEEEeCCCCCcCHHHHHHHHHHhcceEEecchHHHHHHHhCCccCccccccceEEEEecCCcCCHHHHHHHHHHhCCCce
Confidence            9999988  699999999999999999999999999999998777666665 99988  778999999999999995379


Q ss_pred             eeeccccccCcccccC-C-C---CCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCC
Q psy8225         351 CEFYGATEGNANLMNA-D-G---KVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESR  425 (479)
Q Consensus       351 ~~~YG~tE~~~~~~~~-~-~---~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~  425 (479)
                      .+.||+||+++.++.. . .   ..+++|.|+|      +++++|+|+++++          +++ |+.|||+++    |
T Consensus       321 ~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~p------g~~v~Ivd~~~~~----------~~p-g~vGei~ir----g  379 (534)
T COG0318         321 LEGYGLTETSPVVTINPPDDLLAKPGSVGRPLP------GVEVRIVDPDGGE----------VLP-GEVGEIWVR----G  379 (534)
T ss_pred             EEeecccccCceeecCCCchhhhcCCcccccCC------CcEEEEEeCCCCc----------cCC-CCceEEEEE----C
Confidence            9999999998665432 2 2   4566777665      7999999988764          234 889999999    8


Q ss_pred             cccccccccCcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         426 AESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       426 ~~~~~~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                      | +++.|||++++.+.+.|++     +|||+|||+|++|+||+++|+||.||++
T Consensus       380 p-~v~~GY~~~pe~t~~~f~~-----~gW~~TGDlg~~d~~G~l~i~gR~kd~I  427 (534)
T COG0318         380 P-NVMKGYWNRPEATAEAFDE-----DGWLRTGDLGYVDEDGYLYIVGRLKDLI  427 (534)
T ss_pred             c-hhhhhhcCChHHHHHhhcc-----CCeeeecceEEEcCCccEEEEeccceEE
Confidence            8 9999999998888777652     5999999999999999999999999974

>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

Probab=100.00  E-value=4.4e-61  Score=467.95  Aligned_cols=389  Identities=23%  Similarity=0.310  Sum_probs=319.8

Q ss_pred             chhHHHHHHHhh-cCCCccccEEE--------Eeh-hhHHHHHHHHHHHHH-cCCCCCCEEEEEcCCchHHHHHHHHhhh
Q psy8225          47 TYARPLFVRTIR-EVPMTGAYKYT--------VTF-QVEDHSNRIANFFKS-KGLQRGDAVALFMEGQPEYVCMWLGLSK  115 (479)
Q Consensus        47 ~~l~~~l~~~~~-~~p~~~a~~~~--------~Ty-~l~~~~~~la~~L~~-~gi~~gd~V~i~~~n~~e~~~~~lA~~~  115 (479)
                      |.-+++++++.. ..+++.|+++.        +|| ||.+++.++|+.|++ .|+ +||||+|++||.+|.++++|||++
T Consensus         9 N~~~n~~dr~~~~~~~~~~aii~~~e~~~~~~~Ty~~L~~~v~r~A~~L~~~~gv-kGDrV~iymp~~pe~~~a~LA~~r   87 (528)
T COG0365           9 NLALNALDRHLEADRPDDTAIIFDGEDGLFRELTYGDLRREVARLANALKDLGGV-KGDRVAIYMPNSPEAVIALLATAR   87 (528)
T ss_pred             echhhhhhhhhhccCCCceEEEEEcCCCCceEEEHHHHHHHHHHHHHHHHHhCCC-CCCEEEEEcCCCHHHHHHHHHHHH
Confidence            333567888876 35789999998        999 999999999999997 568 999999999999999999999999


Q ss_pred             cCceeeeecCCcchHHHHHHHHhccceEEEeChhhHHHHHHh------hccCCcceEEecCCCCCCCccCCCcccccccc
Q psy8225         116 IGVVAAFINTNQRQHILIHSIKVAECKAIIYGAELSEALTEV------KDSIPGISLYAAGTRRKPQAKVLPSTTLLDEE  189 (479)
Q Consensus       116 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (479)
                      +|++.+|+.+.++++++.+++++++++++|+.+......+..      .+....  +++....          ...|.+.
T Consensus        88 iGAI~~~vf~~f~~~al~~Ri~d~~~k~vit~d~~~~~gk~~~~~~~~~~~~~~--~iv~~r~----------~~~~~~~  155 (528)
T COG0365          88 IGAIPAVVSPGLSAEAVADRIADLGPKVLIADDGTFRNGKEIALLEDADAVLSS--VVVVPRL----------GLWYDEA  155 (528)
T ss_pred             cCCEEeecccCCCHHHHHHHHHccCCCEEEEecccccccccccchhHHHHhhcc--eEEeccc----------cccHHHH
Confidence            999999999999999999999999999999976544322211      111111  2222111          1445565


Q ss_pred             CCcCCCCCCcccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhh-hhhcCCCCCCeEEEeccchhhhhhHHHH
Q psy8225         190 LPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISG-RYQTGLTSDDVVYTTLPLYHTAGGLLGI  268 (479)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~-~~~~~~~~~d~~~~~~pl~h~~g~~~~~  268 (479)
                      .+........   .....+++++++|||||||+||||+|+|..++...... ...+++.++|++++..++.|++|..+.+
T Consensus       156 ~~~~~~~~~~---~~~~~~dpl~ilYTSGTTG~PKgv~H~~gg~l~~~~~~~~~~~~~~~~Dv~w~~ad~GW~~g~~~~v  232 (528)
T COG0365         156 VEKASEKFEF---EPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAKFHGDLLPGDRFWNSSDPGWIYGLWYSV  232 (528)
T ss_pred             hhccCCCCCc---cccCCCCeEEEEeCCCCCCCCceEEEeCchHHHHHHHHHHHhhCCCCCCEEEeCCCchhhhCchHHH
Confidence            5544433322   33688999999999999999999999999776655544 4467888999999999999999999999


Q ss_pred             HHHHhcCceEEecCC--C-ChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEE--ecCCChhhHHHHHH
Q psy8225         269 GQCLLGGSTVVIRSK--F-SASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQK  343 (479)
Q Consensus       269 ~~~l~~G~~~v~~~~--~-~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~--G~~l~~~~~~~~~~  343 (479)
                      +.++..|+++++.+.  + ++.++++.|+++++|.++++|+.++.|.+.......++++||.+.  |||++++.++++.+
T Consensus       233 ~~pL~~Gat~~~~eg~p~~~~~~~~~~ie~~~vt~~~tsPT~~R~l~~~g~~~~~dlssLr~~~SaGEPLnpe~~~w~~~  312 (528)
T COG0365         233 FSPLASGATTVLYDGRPFYSPERLWEALEKYKVTIFGTSPTFLRRLMKLGLGEPYDLSSLRVLGSAGEPLNPEAFEWFYS  312 (528)
T ss_pred             HHHHhcCCeEEEeCCCCCCCHHHHHHHHHHhCCceEeeCHHHHHHHHhcCCcccccchhheeeeccCCCCCHHHHHHHHH
Confidence            999999999998763  3 489999999999999999999999999998875667899999987  99999999999999


Q ss_pred             HhCcceeeeeccccccCcccccCCC--CCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEe
Q psy8225         344 RFGLDRICEFYGATEGNANLMNADG--KVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMI  421 (479)
Q Consensus       344 ~~~~~~v~~~YG~tE~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~  421 (479)
                      .+|+ ++.+.||+||++++......  ++++.|.|+|      |+++.++|++ |+          ++++|+ |+|+++.
T Consensus       313 ~~g~-~i~d~~gqTEtg~~~~~~~~~~~~g~~g~p~p------G~~~~vvdd~-g~----------~~~~~~-G~Lvi~~  373 (528)
T COG0365         313 ALGV-WILDIYGQTETGMGFIAGRPPVKNGSSGLPLP------GYAVRRVDDE-GN----------PVPPGV-GELVVRL  373 (528)
T ss_pred             HhCC-CEeccccccccCccccCCCCCcCCCCCCCCCC------CceeEEECCC-CC----------cCCCCc-eEEEEeC
Confidence            9997 99999999999955543332  5566688776      8999999987 77          678888 9999994


Q ss_pred             ecCCcccccccccCcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         422 KESRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       422 ~~~~~~~~~~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                      .  .| +++.+||++++...+.+.      ++||.|||.+++|+||++||+||.||++
T Consensus       374 ~--~p-~~~~~~w~d~er~~~~y~------~~~y~tGD~~~~DedGy~~i~GR~DDvI  422 (528)
T COG0365         374 P--WP-GMALTYWNDPERYKEAYF------GRWYRTGDWAERDEDGYFWLHGRSDDVI  422 (528)
T ss_pred             C--Cc-hhhhhhhCCHHHHHHHHh------hceeecCceeEEccCCCEEEEeeccceE
Confidence            3  55 899999999876665543      3399999999999999999999999974

>PTZ00342 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=8.9e-60  Score=487.71  Aligned_cols=403  Identities=18%  Similarity=0.221  Sum_probs=314.4

Q ss_pred             ccchhHHHHHHHhhcCCCccccEE-------E-Eeh-hhHHHHHHHHHHHHHc---CCCCC-----------CEEEEEcC
Q psy8225          45 LPTYARPLFVRTIREVPMTGAYKY-------T-VTF-QVEDHSNRIANFFKSK---GLQRG-----------DAVALFME  101 (479)
Q Consensus        45 ~~~~l~~~l~~~~~~~p~~~a~~~-------~-~Ty-~l~~~~~~la~~L~~~---gi~~g-----------d~V~i~~~  101 (479)
                      .-.++.++|.++++.+|+++|+.+       . +|| |+.+++.++|++|.+.   |+++|           |+|+|+++
T Consensus        59 ~~~~l~~~l~~~~~~~p~~~Al~~~~~g~~~~~~Ty~el~~~v~~~A~~L~~~~~~Gv~~g~~~~~~~~g~~d~V~i~~~  138 (746)
T PTZ00342         59 VYKHIMKLLLEKYKLNNNKIAIVEHSCGEPQNYITYGNFFKKVLSFSHSLNTYEGKGIPEKKYNEEQNNGKFKLLGLYGS  138 (746)
T ss_pred             ccchHHHHHHHHHhhcCCceeEeccCCCCCceeeeHHHHHHHHHHHHHHHHHHhhcCCCcCccccccccccccEEEEEcC
Confidence            346799999999999999999986       3 999 9999999999999974   99998           99999999


Q ss_pred             CchHHHHHHHHhhhcCceeeeecCCcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCCcce-EEecCCCCCCC----
Q psy8225         102 GQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGIS-LYAAGTRRKPQ----  176 (479)
Q Consensus       102 n~~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~----  176 (479)
                      |++||+++++||+++|+++||+++.++.+++.++|++++++++|++.+..+.+.+....++.++ +++++......    
T Consensus       139 N~~ew~~~~lA~~~~Gav~Vpl~~~~~~~el~~il~~s~~~~lv~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~  218 (746)
T PTZ00342        139 NSINWLVADLACMLSGVTTLVMHSKFSIDVIVDILNETKLEWLCLDLDLVEGLLERKNELPHLKKLIILDTLIKSKEINI  218 (746)
T ss_pred             CCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHhcCCCCEEEEcHHHHHHHHHhhccCCCceEEEEECCCCccccccc
Confidence            9999999999999999999999999999999999999999999998887777766666666554 34443211000    


Q ss_pred             -------------ccCCC--------------------------------------------ccccccccCCcCCCCCCc
Q psy8225         177 -------------AKVLP--------------------------------------------STTLLDEELPEVSAKSPT  199 (479)
Q Consensus       177 -------------~~~~~--------------------------------------------~~~~~~~~~~~~~~~~~~  199 (479)
                                   .....                                            ....|+++......   .
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~  295 (746)
T PTZ00342        219 NKEEKNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPLEYDKEKLEKIKDLKEKAKKLGISIILFDDMTKNKTT---N  295 (746)
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccchhhhhhhHHHHHHhhcCCCEEEEHHHHHhhccc---C
Confidence                         00000                                            00001111100000   0


Q ss_pred             ccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhc--CCCCCCeEEEeccchhhhhhHHHHHHHHhcCce
Q psy8225         200 EDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQT--GLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGST  277 (479)
Q Consensus       200 ~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~--~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G~~  277 (479)
                      .......++++++|+|||||||.||||++||+|+++.+.......  .....+++++.+|++|++++.. .+.++..|++
T Consensus       296 ~~~~~~~~dd~a~IiYTSGTTG~PKGVmlTH~nl~~~~~~~~~~~~~~~~~~d~~ls~LPL~Hi~~~~~-~~~~l~~G~~  374 (746)
T PTZ00342        296 YKIQNEDPDFITSIVYTSGTSGKPKGVMLSNKNLYNTVVPLCKHSIFKKYNPKTHLSYLPISHIYERVI-AYLSFMLGGT  374 (746)
T ss_pred             CCCCCCCccceEEEEEcCCCCCCCCEEEEccHHHHHHHHHHhhcccccCCCCCeEEEeCcHHHHHHHHH-HHHHHHcCCE
Confidence            011334678999999999999999999999999998876544321  2235689999999999999854 5567899999


Q ss_pred             EEecCCCChhHHHHHHHHhcccEEEEehHHHHHHhcC--------CCCCC------------------------------
Q psy8225         278 VVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAV--------PEKPE------------------------------  319 (479)
Q Consensus       278 ~v~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~--------~~~~~------------------------------  319 (479)
                      +++.+. ++..+++.|+++++|++.++|.+++.|...        +....                              
T Consensus       375 i~~~~~-~~~~l~~di~~~~pT~~~~VP~v~~~i~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~v~~  453 (746)
T PTZ00342        375 INIWSK-DINYFSKDIYNSKGNILAGVPKVFNRIYTNIMTEINNLPPLKRFLVKKILSLRKSNNNGGFSKFLEGITHISS  453 (746)
T ss_pred             EEEeCC-CHHHHHHHHHHhCCcEEEchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHH
Confidence            998765 889999999999999999999999888642        10000                              


Q ss_pred             ----CCCCceeEEE--ecCCChhhHHHHHHHhCcceeeeeccccccCccccc---CCCCCCcccccC-ccccCCCceeeE
Q psy8225         320 ----DTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFYGATEGNANLMN---ADGKVGAVGYIP-YIAIPFYPVGLI  389 (479)
Q Consensus       320 ----~~l~~lr~~~--G~~l~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~---~~~~~~~~g~~~-~~~~~~~~~~~~  389 (479)
                          ...++||.++  |+++++++.++|++.+|. .++++||+||+++.++.   .+..++++|+|+ |      +++++
T Consensus       454 kir~~lg~~lr~~~sGGapl~~~~~~~~~~~~g~-~i~~gYGlTEt~~~~~~~~~~~~~~gsvG~p~~p------g~e~k  526 (746)
T PTZ00342        454 KIKDKVNPNLEVILNGGGKLSPKIAEELSVLLNV-NYYQGYGLTETTGPIFVQHADDNNTESIGGPISP------NTKYK  526 (746)
T ss_pred             HHHHhhCCCeEEEEEcCCCCCHHHHHHHHHhcCC-CEEEeeccCcccceeeeccCCCCCcccccCcCCC------cEEEE
Confidence                0125888877  789999999999999998 89999999998755432   234567888865 5      79999


Q ss_pred             EeCCCCCCccccCCCccccccCCCCceEEEEeecCCcccccccccCcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcE
Q psy8225         390 KCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYF  469 (479)
Q Consensus       390 i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l  469 (479)
                      ++|.+++.          ..+.+..|||+++    || ++|.|||++|+.|++.|+     .||||+|||+|++|+||+|
T Consensus       527 i~d~~~~~----------~~~~~~~GEl~vr----Gp-~v~~GY~~~pe~T~~~f~-----~dGW~~TGDig~~d~dG~l  586 (746)
T PTZ00342        527 VRTWETYK----------ATDTLPKGELLIK----SD-SIFSGYFLEKEQTKNAFT-----EDGYFKTGDIVQINKNGSL  586 (746)
T ss_pred             Eecccccc----------cCCCCCceEEEEe----cC-cccccccCChhhhhhhcC-----cCCcccCCcEEEECCCCeE
Confidence            99865433          1133457999998    88 999999999998887764     3899999999999999999


Q ss_pred             EEecCCCCCC
Q psy8225         470 YFKDRTGDAC  479 (479)
Q Consensus       470 ~~~GR~~d~~  479 (479)
                      +|+||+||++
T Consensus       587 ~i~gR~kdlI  596 (746)
T PTZ00342        587 TFLDRSKGLV  596 (746)
T ss_pred             EEEccCCCeE
Confidence            9999999984

>PLN02614 long-chain acyl-CoA synthetase

Probab=100.00  E-value=4.2e-59  Score=483.77  Aligned_cols=403  Identities=18%  Similarity=0.167  Sum_probs=306.9

Q ss_pred             chhHHHHHHHhhcCCCccccEE-----------E-Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHh
Q psy8225          47 TYARPLFVRTIREVPMTGAYKY-----------T-VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGL  113 (479)
Q Consensus        47 ~~l~~~l~~~~~~~p~~~a~~~-----------~-~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~  113 (479)
                      .++.++|+++++.+|+++|+.+           . +|| ||.++++++|++|+++|+++||+|+|+++|++||++++|||
T Consensus        45 ~t~~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~Gd~Vai~~~n~~e~~~~~lA~  124 (666)
T PLN02614         45 DSCWDVFRMSVEKYPNNPMLGRREIVDGKPGKYVWQTYQEVYDIVIKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEAC  124 (666)
T ss_pred             CcHHHHHHHHHHhCCCCCeEEEecccCCCCCCcEEeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence            4789999999999999999973           1 799 99999999999999999999999999999999999999999


Q ss_pred             hhcCceeeeecCCcchHHHHHHHHhccceEEEeChhhHHHHHHhhccC-Ccce-EEecCCCCCCC----ccCCCcccccc
Q psy8225         114 SKIGVVAAFINTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSI-PGIS-LYAAGTRRKPQ----AKVLPSTTLLD  187 (479)
Q Consensus       114 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~----~~~~~~~~~~~  187 (479)
                      +++|+++||+++.++.+++.+++++++++++|++.+....+....... +.++ ++..+......    .........++
T Consensus       125 ~~~Gav~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~~~~~  204 (666)
T PLN02614        125 NAHGLYCVPLYDTLGAGAVEFIISHSEVSIVFVEEKKISELFKTCPNSTEYMKTVVSFGGVSREQKEEAETFGLVIYAWD  204 (666)
T ss_pred             HHcCCEEEEecCCCCHHHHHHHHhccCCCEEEECHHHHHHHHHhcccccccceEEEEeCCCChHHhhhhhhcCcEEEEHH
Confidence            999999999999999999999999999999999876544433222211 1122 33332211000    00000123344


Q ss_pred             ccCCcCCCCCCcccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhc-----CCCCCCeEEEeccchhhh
Q psy8225         188 EELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQT-----GLTSDDVVYTTLPLYHTA  262 (479)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~-----~~~~~d~~~~~~pl~h~~  262 (479)
                      +++.........  .....++++++|+|||||||.||||++||+++...+......+     ++..+|++++.+|++|.+
T Consensus       205 ~~~~~~~~~~~~--~~~~~~~d~a~I~yTSGTTG~PKGV~lth~nl~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~  282 (666)
T PLN02614        205 EFLKLGEGKQYD--LPIKKKSDICTIMYTSGTTGDPKGVMISNESIVTLIAGVIRLLKSANAALTVKDVYLSYLPLAHIF  282 (666)
T ss_pred             HHHhhcccCCCC--CCCCCCCceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHhhccccccCCCCCcEEEEeccHHHHH
Confidence            443322111111  1234578999999999999999999999999988766554332     467899999999999999


Q ss_pred             hhHHHHHHHHhcCceEEecCCCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCC-------------------------
Q psy8225         263 GGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEK-------------------------  317 (479)
Q Consensus       263 g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~-------------------------  317 (479)
                      ++.. ....+..|+++++.+ +++..+++.++++++|++.++|++++.+......                         
T Consensus       283 ~~~~-~~~~l~~G~~v~~~~-~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  360 (666)
T PLN02614        283 DRVI-EECFIQHGAAIGFWR-GDVKLLIEDLGELKPTIFCAVPRVLDRVYSGLQKKLSDGGFLKKFVFDSAFSYKFGNMK  360 (666)
T ss_pred             HHHH-HHHHHHhCCEEEEeC-CCHHHHHHHHHHhCCeEEEecHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHH
Confidence            8754 455678899998865 5899999999999999999999999877632100                         


Q ss_pred             ------CCC-------------C-CCceeEEE--ecCCChhhHHHHHHHhCcceeeeeccccccCcccc-cCC---CCCC
Q psy8225         318 ------PED-------------T-QHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFYGATEGNANLM-NAD---GKVG  371 (479)
Q Consensus       318 ------~~~-------------~-l~~lr~~~--G~~l~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~-~~~---~~~~  371 (479)
                            ...             . .++||.++  |+++++++ ++|.+.++...+++.||+||+++.++ ..+   .+++
T Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~~~~Gga~l~~~~-~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~g  439 (666)
T PLN02614        361 KGQSHVEASPLCDKLVFNKVKQGLGGNVRIILSGAAPLASHV-ESFLRVVACCHVLQGYGLTESCAGTFVSLPDELDMLG  439 (666)
T ss_pred             cCCCCcccchHHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHH-HHHHHHhcCCCEEeeCchHhhhhheeeeccccCCcCC
Confidence                  000             0 15788877  67788764 66777776338999999999875443 222   2457


Q ss_pred             cccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCcccccccccCcchhHHHHHhhhccCC
Q psy8225         372 AVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNGYADKKASEKKILRNVYSHG  451 (479)
Q Consensus       372 ~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~gY~~~~~~~~~~~~~~~~~~  451 (479)
                      ++|+|+|      +++++++|.+.+.        ..++++|+.|||+++    || ++|.|||++++.|.+.|.      
T Consensus       440 svG~p~p------g~evki~d~~~~~--------~~~~~~g~~GEl~vr----Gp-~v~~GY~~~pe~T~~~f~------  494 (666)
T PLN02614        440 TVGPPVP------NVDIRLESVPEME--------YDALASTPRGEICIR----GK-TLFSGYYKREDLTKEVLI------  494 (666)
T ss_pred             cccCcCC------ceEEEEeeecccC--------cccCCCCCCceEEEc----CC-cccccccCCHHHhhhhhc------
Confidence            7888766      7999998733221        015688999999998    88 999999999988887764      


Q ss_pred             CcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         452 DAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       452 ~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                      +|||+|||+|++|+||+|+|+||+||++
T Consensus       495 dGw~~TGDlg~~d~dG~l~i~gR~kd~i  522 (666)
T PLN02614        495 DGWLHTGDVGEWQPNGSMKIIDRKKNIF  522 (666)
T ss_pred             cCCcccceEEEEcCCCCEEEEEcchhce
Confidence            7999999999999999999999999985

>PLN02736 long-chain acyl-CoA synthetase

Probab=100.00  E-value=1.1e-58  Score=481.89  Aligned_cols=407  Identities=20%  Similarity=0.202  Sum_probs=322.4

Q ss_pred             ccchhHHHHHHHhhcCCCccccEE-----------E-Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHH
Q psy8225          45 LPTYARPLFVRTIREVPMTGAYKY-----------T-VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWL  111 (479)
Q Consensus        45 ~~~~l~~~l~~~~~~~p~~~a~~~-----------~-~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~l  111 (479)
                      ...++.++|+++++.+|+++|+.+           . +|| ||.++++++|++|+++|+++||+|+|+++|++||+++++
T Consensus        42 ~~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~lTy~el~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~l  121 (651)
T PLN02736         42 EIGTLHDNFVYAVETFRDYKYLGTRIRVDGTVGEYKWMTYGEAGTARTAIGSGLVQHGIPKGACVGLYFINRPEWLIVDH  121 (651)
T ss_pred             CCCCHHHHHHHHHHhCCCCCeEEEEecCCCCCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHH
Confidence            346799999999999999999842           2 899 999999999999999999999999999999999999999


Q ss_pred             HhhhcCceeeeecCCcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCCcceEEecCCC-CCCC----ccCCCccccc
Q psy8225         112 GLSKIGVVAAFINTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTR-RKPQ----AKVLPSTTLL  186 (479)
Q Consensus       112 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~  186 (479)
                      ||+++|++++|+++.++.+++.+++++++++++|++.+..+.+.......+.++.++..+. ....    .........+
T Consensus       122 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~  201 (651)
T PLN02736        122 ACSAYSYVSVPLYDTLGPDAVKFIVNHAEVAAIFCVPQTLNTLLSCLSEIPSVRLIVVVGGADEPLPSLPSGTGVEIVTY  201 (651)
T ss_pred             HHHHcCCeEEEeecCCCHHHHHHHHhccCCCEEEECHHHHHHHHHHhhcCCCceEEEEECCCchhhhhhhccCCcEEEEH
Confidence            9999999999999999999999999999999999998877766666555555554333211 1000    0000112334


Q ss_pred             cccCCcCCCCCCcccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcCCCCCCeEEEeccchhhhhhHH
Q psy8225         187 DEELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLL  266 (479)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~  266 (479)
                      ++++.........  .....++++++|+|||||||.||||++||+++...+......+++.++|++++.+|++|.+++. 
T Consensus       202 ~~~~~~~~~~~~~--~~~~~~dd~a~IlyTSGTTG~PKGV~lsh~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~-  278 (651)
T PLN02736        202 SKLLAQGRSSPQP--FRPPKPEDVATICYTSGTTGTPKGVVLTHGNLIANVAGSSLSTKFYPSDVHISYLPLAHIYERV-  278 (651)
T ss_pred             HHHHHhcccCCCC--CCCCCccceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHhccCCCCCCEEEEeCCHHHHHHHH-
Confidence            4444322211111  1234678999999999999999999999999999888887778889999999999999999985 


Q ss_pred             HHHHHHhcCceEEecCCCChhHHHHHHHHhcccEEEEehHHHHHHhcCCC-----------------------------C
Q psy8225         267 GIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPE-----------------------------K  317 (479)
Q Consensus       267 ~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~-----------------------------~  317 (479)
                      .++.++..|+++++.+. ++..+++.|+++++|++.++|.+++.+.+...                             .
T Consensus       279 ~~~~~l~~G~~i~~~~~-~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (651)
T PLN02736        279 NQIVMLHYGVAVGFYQG-DNLKLMDDLAALRPTIFCSVPRLYNRIYDGITNAVKESGGLKERLFNAAYNAKKQALENGKN  357 (651)
T ss_pred             HHHHHHHcCCEEEEeCC-CHHHHHHHHHHhCCcEEecchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHcCCC
Confidence            56778999999988764 78899999999999999999999987754310                             0


Q ss_pred             CCC------------CC-CceeEEE--ecCCChhhHHHHHHHhCcceeeeeccccccCcccccC---CCCCCcccccCcc
Q psy8225         318 PED------------TQ-HSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFYGATEGNANLMNA---DGKVGAVGYIPYI  379 (479)
Q Consensus       318 ~~~------------~l-~~lr~~~--G~~l~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~---~~~~~~~g~~~~~  379 (479)
                      ...            .+ +++|.++  |+++++++.+++++.+|. .+++.||+||+++.++..   ...++++|+|+| 
T Consensus       358 ~~~~~~~~~~~~~~~~lg~~lr~~~~gGa~l~~~~~~~~~~~~g~-~~~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~p-  435 (651)
T PLN02736        358 PSPMWDRLVFNKIKAKLGGRVRFMSSGASPLSPDVMEFLRICFGG-RVLEGYGMTETSCVISGMDEGDNLSGHVGSPNP-  435 (651)
T ss_pred             CCchHHHHHHHHHHHHhcCcEEEEEeCCCCCCHHHHHHHHHHhCC-CeEEEechHHhchheeccCCCCCCCCccCCccC-
Confidence            000            01 4788877  788999999999999998 899999999988655422   235577787766 


Q ss_pred             ccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCcccccccccCcchhHHHHHhhhccCCCcEEEcCC
Q psy8225         380 AIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGD  459 (479)
Q Consensus       380 ~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~gY~~~~~~~~~~~~~~~~~~~g~~~TGD  459 (479)
                           +++++++|.+++....       ...+++.|||+++    || ++|.|||++++.+.+.|.     .+|||+|||
T Consensus       436 -----g~~v~i~d~~~~~~~~-------~~~~~~~GEl~vr----gp-~v~~GY~~~~~~t~~~~~-----~dgw~~TGD  493 (651)
T PLN02736        436 -----ACEVKLVDVPEMNYTS-------EDQPYPRGEICVR----GP-IIFKGYYKDEVQTREVID-----EDGWLHTGD  493 (651)
T ss_pred             -----ceEEEEEEccccCccc-------CCCCCCCceEEec----CC-ccccccccCHHHHHhhhc-----cCCCeeccc
Confidence                 7999999854332110       1234457999998    88 999999999988877664     379999999


Q ss_pred             eeEEecCCcEEEecCCCCCC
Q psy8225         460 ILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       460 ~g~~d~dG~l~~~GR~~d~~  479 (479)
                      +|++|+||+|+|+||+||++
T Consensus       494 lg~~d~dG~l~i~GR~kd~i  513 (651)
T PLN02736        494 IGLWLPGGRLKIIDRKKNIF  513 (651)
T ss_pred             eEEEcCCCcEEEEEechhhe
Confidence            99999999999999999985

>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

Probab=100.00  E-value=4.8e-59  Score=459.66  Aligned_cols=388  Identities=23%  Similarity=0.286  Sum_probs=304.0

Q ss_pred             chhHHHHHHHhhcCCCccccEEE-------Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCc
Q psy8225          47 TYARPLFVRTIREVPMTGAYKYT-------VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGV  118 (479)
Q Consensus        47 ~~l~~~l~~~~~~~p~~~a~~~~-------~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~  118 (479)
                      .++..++.++++.+|+.+|+.+.       +|| |+.+++.++|++|+..|+..||+|+|++.|+++|+++.+||+.+|+
T Consensus        16 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ty~e~~~~v~~~a~gL~~lg~~~gdrvai~a~nr~eW~i~d~a~~~~g~   95 (613)
T COG1022          16 HTLPKRLAERVKDRPDGVALMYKELGGWEAITYRELYERVRALASGLLSLGIPAGDRVAIFAANRPEWAIADLAILALGA   95 (613)
T ss_pred             ccHHHHHHHHhhcCCcceeEeeecCCcceEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHHHHcCC
Confidence            44789999999999998898876       999 9999999999999999997799999999999999999999999999


Q ss_pred             eeeeecCCcchHHHHHHHHhccceEEEeChh-hHHHHHHhhccCCcceEEe-cCC--CCCCCccCCCccccccccCCcC-
Q psy8225         119 VAAFINTNQRQHILIHSIKVAECKAIIYGAE-LSEALTEVKDSIPGISLYA-AGT--RRKPQAKVLPSTTLLDEELPEV-  193 (479)
Q Consensus       119 ~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~-~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~-  193 (479)
                      +.||++++.+++++.++|++++++++|++.. ..+.+..+...++.+.... ...  .....    .....++...... 
T Consensus        96 v~Vp~y~t~~~~~~~~iL~~se~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~  171 (613)
T COG1022          96 VSVPIYSTSTPEQLAYILNESESKVIFVENQELLDLVLPVLEDCPKVVDLIVIIDLVREAVE----AKALVLEVFPDEGI  171 (613)
T ss_pred             eEEecCCCCCHHHHHHHHhcCCceEEEecchHHHHHHHhhhccccchhhhhhhhhhhhhccc----hhhccccccccccc
Confidence            9999999999999999999999999999874 4455555554433211000 000  00000    0001111111110 


Q ss_pred             -----CCCCCcccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcC-CCCCCeEEEeccchhhhhhHHH
Q psy8225         194 -----SAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTG-LTSDDVVYTTLPLYHTAGGLLG  267 (479)
Q Consensus       194 -----~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~-~~~~d~~~~~~pl~h~~g~~~~  267 (479)
                           .............++|.|.|+|||||||.||||++||+|+++++........ ..++|+.++.+|+.|++.+++.
T Consensus       172 ~~~~~~~~~~~~~~~~~~~dDlatiiYTSGTTG~PKGVmLth~N~~~~v~~~~~~~~~~~~~d~~LsfLPlaHi~Er~~~  251 (613)
T COG1022         172 SLFLIDSAGLEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVLPPIGPGDRVLSFLPLAHIFERAFE  251 (613)
T ss_pred             hhhhhcccccccccCCCCccceEEEEEcCCCCCCCceEEEehHHHHHHHHHHHhhCCCCCCCcEEEEeCcHHHHHHHHHH
Confidence                 0000111114568899999999999999999999999999999999999886 8999999999999999998766


Q ss_pred             HHHHHhcCceEEecCCCChhHHHHHHHHhcccEEEEehHHHHHHhcC--------CCCC---------------------
Q psy8225         268 IGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAV--------PEKP---------------------  318 (479)
Q Consensus       268 ~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~--------~~~~---------------------  318 (479)
                      ....+..|.++..  ..++..+++.++.++||.+.++|.+++.+.+.        ....                     
T Consensus       252 ~~~~~~~g~~~~~--~~~~~~~~~dl~~~rPt~m~~VPRvwE~i~~~I~~kv~~~~~~~~~if~~a~~~~~~~~~~~~~~  329 (613)
T COG1022         252 GGLALYGGVTVLF--KEDPRTLLEDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFRWALKVAYKKISRALLG  329 (613)
T ss_pred             HHHHhhcceEEEe--cCCHHHHHHHHHHhCCeEEeechHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhcc
Confidence            5555555655554  55899999999999999999999998763221        0000                     


Q ss_pred             ------------------C-CCCCceeEEE--ecCCChhhHHHHHHHhCcceeeeeccccccCcccccC---CCCCCccc
Q psy8225         319 ------------------E-DTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFYGATEGNANLMNA---DGKVGAVG  374 (479)
Q Consensus       319 ------------------~-~~l~~lr~~~--G~~l~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~---~~~~~~~g  374 (479)
                                        . ..-.++|.+.  |+++++++...|+ .+|+ ++.++||+||+++.++..   ...++++|
T Consensus       330 ~~~~~~~~~~d~LVf~Kir~~lGgri~~~~sGGa~l~~~~~~f~~-~lGi-~i~eGYGlTEts~~~~v~~~~~~~~gtvG  407 (613)
T COG1022         330 GGPLSWLLVADRLVFRKIRDALGGRIRYALSGGAPLSPELLHFFR-SLGI-PILEGYGLTETSAVVSVNPPDRFVLGTVG  407 (613)
T ss_pred             cCCcchhhhhhHHHHHHHHHHhCCcEEEEEecCCcCCHHHHHHHH-HcCC-CeEEEecccccccceEEccccCcccCCcC
Confidence                              0 0013677766  6789999987776 5688 999999999998776533   35779999


Q ss_pred             ccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCcccccccccCcchhHHHHHhhhccCCCcE
Q psy8225         375 YIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNGYADKKASEKKILRNVYSHGDAA  454 (479)
Q Consensus       375 ~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~gY~~~~~~~~~~~~~~~~~~~g~  454 (479)
                      .|+|      ++++++.|                     .|||++|    || ++|.|||++|+.|.+.|+.     |||
T Consensus       408 ~p~p------~~evKI~d---------------------~GEilVR----G~-~Vm~GYyk~pe~Taeaf~~-----DGW  450 (613)
T COG1022         408 KPLP------GIEVKIAD---------------------DGEILVR----GP-NVMKGYYKNPEATAEAFTE-----DGW  450 (613)
T ss_pred             CcCC------CceEEEcc---------------------CceEEEe----cc-hhcchhcCChHHHhhhccc-----cCC
Confidence            9877      78888876                     4999999    88 9999999999999988863     999


Q ss_pred             EEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         455 FNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       455 ~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                      |+|||+|.+|++|+|+|+||+||++
T Consensus       451 f~TGDlg~~d~~g~L~i~gRkK~~i  475 (613)
T COG1022         451 FRTGDLGELDEDGYLVITGRKKELI  475 (613)
T ss_pred             cccCceeEEcCCCcEEEeecccceE
Confidence            9999999999999999999999974

>PLN02861 long-chain-fatty-acid-CoA ligase

Probab=100.00  E-value=1.6e-58  Score=479.92  Aligned_cols=401  Identities=18%  Similarity=0.206  Sum_probs=308.0

Q ss_pred             chhHHHHHHHhhcCCCccccEE-----------E-Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHh
Q psy8225          47 TYARPLFVRTIREVPMTGAYKY-----------T-VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGL  113 (479)
Q Consensus        47 ~~l~~~l~~~~~~~p~~~a~~~-----------~-~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~  113 (479)
                      .++.++|.+.++++|+++|+.+           . +|| ||.++++++|++|.++|+++||+|+|+++|++||++++|||
T Consensus        43 ~t~~~~l~~~~~~~p~~~al~~~~~~~~~~g~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~  122 (660)
T PLN02861         43 DSPWQFFSDAVKKYPNNQMLGRRQVTDSKVGPYVWLTYKEVYDAAIRIGSAIRSRGVNPGDRCGIYGSNCPEWIIAMEAC  122 (660)
T ss_pred             CCHHHHHHHHHHhCCCCCeEEEEecCCCCCCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence            5789999999999999999963           2 899 99999999999999999999999999999999999999999


Q ss_pred             hhcCceeeeecCCcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCC-cce-EEecCCCCCCC----ccCCCcccccc
Q psy8225         114 SKIGVVAAFINTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIP-GIS-LYAAGTRRKPQ----AKVLPSTTLLD  187 (479)
Q Consensus       114 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~----~~~~~~~~~~~  187 (479)
                      +++|++++||++.++.+++.+++++++++++|++.+....+.......+ .++ ++..++.....    .........++
T Consensus       123 ~~~G~v~vpl~~~~~~~~l~~il~~s~~~~v~~~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~  202 (660)
T PLN02861        123 NSQGITYVPLYDTLGANAVEFIINHAEVSIAFVQESKISSILSCLPKCSSNLKTIVSFGDVSSEQKEEAEELGVSCFSWE  202 (660)
T ss_pred             HHcCCeEEEecCCCCHHHHHHHHHcCCCCEEEECHHHHHHHHHhhhhCCCCCEEEEEECCCChhhhhhhhcCCcEEEEHH
Confidence            9999999999999999999999999999999998776555544433332 233 33333211000    00001122344


Q ss_pred             ccCCcCCCCCCcccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcC-----CCCCCeEEEeccchhhh
Q psy8225         188 EELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTG-----LTSDDVVYTTLPLYHTA  262 (479)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~-----~~~~d~~~~~~pl~h~~  262 (479)
                      +++........   .....++++++|+|||||||.||||++||++++..+......++     +..+|++++.+|++|.+
T Consensus       203 ~~~~~~~~~~~---~~~~~~dd~a~i~yTSGTTG~PKGV~lth~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~  279 (660)
T PLN02861        203 EFSLMGSLDCE---LPPKQKTDICTIMYTSGTTGEPKGVILTNRAIIAEVLSTDHLLKVTDRVATEEDSYFSYLPLAHVY  279 (660)
T ss_pred             HHHHhCcccCC---CCccCCCceEEEEecCCCCCCCCEEEEecHHHHHHHHHHHhccccccccCCCCCEEEEECcHHHHH
Confidence            43322211111   12346789999999999999999999999999987766554433     46789999999999999


Q ss_pred             hhHHHHHHHHhcCceEEecCCCChhHHHHHHHHhcccEEEEehHHHHHHhcC----------------------------
Q psy8225         263 GGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAV----------------------------  314 (479)
Q Consensus       263 g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~----------------------------  314 (479)
                      ++... +.++..|+++++. .+++..+++.|+++++|++.++|++++.|.+.                            
T Consensus       280 ~~~~~-~~~l~~G~~v~~~-~~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~~  357 (660)
T PLN02861        280 DQVIE-TYCISKGASIGFW-QGDIRYLMEDVQALKPTIFCGVPRVYDRIYTGIMQKISSGGMLRKKLFDFAYNYKLGNLR  357 (660)
T ss_pred             HHHHH-HHHHHhCCEEEEe-CCCHHHHHHHHHHhCCcEEeechHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHh
Confidence            97654 4578999999886 46889999999999999999999999887631                            


Q ss_pred             ---------CCCCCC-------CC-CceeEEE--ecCCChhhHHHHHHHhCcceeeeeccccccCccccc-CC---CCCC
Q psy8225         315 ---------PEKPED-------TQ-HSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFYGATEGNANLMN-AD---GKVG  371 (479)
Q Consensus       315 ---------~~~~~~-------~l-~~lr~~~--G~~l~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~-~~---~~~~  371 (479)
                               +.....       .+ .++|.++  |+++++++. +|.+.++...+++.||+||+++.++. ..   ..++
T Consensus       358 ~~~~~~~~~~~~~~~~~~~~r~~lg~~lr~~~~Ggapl~~~~~-~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~g  436 (660)
T PLN02861        358 KGLKQEEASPRLDRLVFDKIKEGLGGRVRLLLSGAAPLPRHVE-EFLRVTSCSVLSQGYGLTESCGGCFTSIANVFSMVG  436 (660)
T ss_pred             cCCCCcCccHhHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHH-HHHHHHcCCCeeEecchhhhhhceeecccccCCCCC
Confidence                     000000       01 4788877  778999874 57677775479999999998755432 11   2457


Q ss_pred             cccccCccccCCCceeeEEeCC-CCCCccccCCCccccccCCCCceEEEEeecCCcccccccccCcchhHHHHHhhhccC
Q psy8225         372 AVGYIPYIAIPFYPVGLIKCDP-ETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNGYADKKASEKKILRNVYSH  450 (479)
Q Consensus       372 ~~g~~~~~~~~~~~~~~~i~d~-~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~gY~~~~~~~~~~~~~~~~~  450 (479)
                      ++|+|+|      +++++++|. +.|..         .+++++.|||+++    || ++|.|||++++.+.+.|.     
T Consensus       437 svG~p~p------~~ev~i~d~~~~g~~---------~~~~~~~GEi~vr----Gp-~v~~GY~~~pe~T~~~f~-----  491 (660)
T PLN02861        437 TVGVPMT------TIEARLESVPEMGYD---------ALSDVPRGEICLR----GN-TLFSGYHKRQDLTEEVLI-----  491 (660)
T ss_pred             CccCccC------ceEEEEEEccccCcc---------cCCCCCceeEEEc----CC-cccccccCCHHHHHhhhh-----
Confidence            7888766      799999873 33321         2245568999998    88 999999999998887774     


Q ss_pred             CCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         451 GDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       451 ~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                       +|||+|||+|++|+||+|+|+||+||++
T Consensus       492 -dGw~~TGDlg~~d~dG~l~i~GR~kd~I  519 (660)
T PLN02861        492 -DGWFHTGDIGEWQPNGAMKIIDRKKNIF  519 (660)
T ss_pred             -ccCcccCceEEECCCCcEEEEeccccce
Confidence             7999999999999999999999999985

>KOG1256|consensus

Probab=100.00  E-value=5.2e-59  Score=452.27  Aligned_cols=405  Identities=19%  Similarity=0.197  Sum_probs=326.4

Q ss_pred             cccchhHHHHHHHhhcCCCccccEEE-----------Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHH
Q psy8225          44 TLPTYARPLFVRTIREVPMTGAYKYT-----------VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWL  111 (479)
Q Consensus        44 ~~~~~l~~~l~~~~~~~p~~~a~~~~-----------~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~l  111 (479)
                      ..+.|+++.|++.+..+|+.+++.+.           +|| |..+++..+|.+|+++|+++++.|+|++.|++||+++..
T Consensus        72 ~~~~T~~~~f~~~~~~~~~~p~LG~r~~~~~~~~~~~~tY~q~~e~~~~~~~~l~~lG~~~~~~VGIy~~N~pEWiis~~  151 (691)
T KOG1256|consen   72 DGPLTLYEGFRRSVEKSGNGPMLGTRVIVDGKGPYEWLTYKQVYERAENLGSGLRKLGVKEDSKVGIYAFNRPEWIISEM  151 (691)
T ss_pred             CCcccHHHHhhcchhccCCCCceeEEecccCCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCceEEEeccCChhhHHhHH
Confidence            46688999999999999999999987           799 999999999999999999999999999999999999999


Q ss_pred             HhhhcCceeeeecCCcchHHHHHHHHhccceEEEeC-hhhHHHHHHhhcc--CCcceEEecCCCCC-CCc----cCCCcc
Q psy8225         112 GLSKIGVVAAFINTNQRQHILIHSIKVAECKAIIYG-AELSEALTEVKDS--IPGISLYAAGTRRK-PQA----KVLPST  183 (479)
Q Consensus       112 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~----~~~~~~  183 (479)
                      ||...|+++|||+.+++++++.+++++++..++|++ ++....+.+....  .+.++.++.-+... ...    .....+
T Consensus       152 a~~~~~~v~VplYdTlg~ea~~~Ii~~~e~~iv~vd~~~k~~~ll~~~~~~~~~~LK~iI~~~~~~~~~~~~~~~~gv~v  231 (691)
T KOG1256|consen  152 ACYAYSLVNVPLYDTLGAEAVHYIINHAEISIVFVDNAKKAEKLLEIKENDSLPSLKAIIQLDEPSDELKEKAENNGVEV  231 (691)
T ss_pred             HHHhcCCEEeecccCCCHHHHHHHHHhcceeEEEEeCHHHHHHHHhhcccccCccceeEEEecCCchhhhhhhhcCCeEE
Confidence            999999999999999999999999999999999998 5566666665553  66777555433221 111    111237


Q ss_pred             ccccccCCcCCCCCCcccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhh---hhh---cCCCCCCeEEEecc
Q psy8225         184 TLLDEELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISG---RYQ---TGLTSDDVVYTTLP  257 (479)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~---~~~---~~~~~~d~~~~~~p  257 (479)
                      .+|+++++-+........ ..+.+++.+.|+|||||||.|||||+||+|+.+.+...   ...   .....+|++++.+|
T Consensus       232 ~S~~e~~~lG~~~~~~~~-~~p~p~d~atI~yTSGTTG~PKGVMLTH~Niv~~v~~~~~~~~~~~~~~~~~~dv~lSyLP  310 (691)
T KOG1256|consen  232 YSWDEFEELGKKNQRKPR-VPPKPDDLATICYTSGTTGNPKGVMLTHRNIVSDVAGIFFLSAAENAKATVGDDVYLSYLP  310 (691)
T ss_pred             EEHHHHHhhcccccCCCC-CCCCccceEEEEEcCCCCCCCceEEEeccceeehhhhhhhhhhcccccccccCceEEEeCc
Confidence            789999888865554443 47789999999999999999999999999999865431   111   11234699999999


Q ss_pred             chhhhhhHHHHHHHHhcCceEEecCCCChhHHHHHHHHhcccEEEEehHHHHHHhcCC----CC----------------
Q psy8225         258 LYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVP----EK----------------  317 (479)
Q Consensus       258 l~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~----~~----------------  317 (479)
                      +.|++..++..+ .+..|+++.+.. -|+..+.+.|+..+||.+.++|.+|+.+.+..    ..                
T Consensus       311 LAHi~er~~~~~-~~~~G~~IgF~~-gD~~~l~~dlk~lkPT~f~~VPRVl~riye~I~~~~~~sgflkr~l~~~A~~~k  388 (691)
T KOG1256|consen  311 LAHIFERVVELY-TFYIGAKIGFAR-GDILKLTDDLKELKPTVFPGVPRVLERIYEGIQKQVQKSGFLKRKLFNFAMAYK  388 (691)
T ss_pred             HHHHHHHHHHHh-HhhcccEEEEec-CChHHHHHHHHHhCCcEEeccHhHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            999999877655 557888888865 57788888899999999999999987643211    00                


Q ss_pred             ------CCCCC-------------------CceeEEE--ecCCChhhHHHHHHHhCcceeeeeccccccC-cccccC--C
Q psy8225         318 ------PEDTQ-------------------HSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFYGATEGN-ANLMNA--D  367 (479)
Q Consensus       318 ------~~~~l-------------------~~lr~~~--G~~l~~~~~~~~~~~~~~~~v~~~YG~tE~~-~~~~~~--~  367 (479)
                            .....                   .++|.++  ++|+++++.+.++..+|+ +|+++||+||++ +.++..  +
T Consensus       389 ~~~~~~~G~~~~~~~~~D~lVf~KI~~~LGg~vr~~~sGaAPls~ev~~F~r~~~g~-~v~eGYGlTEts~g~~~~~~~d  467 (691)
T KOG1256|consen  389 LEHRLMKGKSRSRDRFADKLVFHKIKQSLGGNVRLIISGAAPLSPEVLTFFRAALGC-RVLEGYGLTETSAGTTLTLPGD  467 (691)
T ss_pred             HHHHhhCCCCcccchHHHHHHHHHHHHHhcCceeEEEecCCCCCHHHHHHHHHhcCc-eeeecccccccCCceEeccCCC
Confidence                  00000                   2566666  678999999999999999 999999999987 444433  3


Q ss_pred             CCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCcccccccccCcchhHHHHHhhh
Q psy8225         368 GKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNGYADKKASEKKILRNV  447 (479)
Q Consensus       368 ~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~gY~~~~~~~~~~~~~~  447 (479)
                      ...+++|.|+|      +++++++|...-..          -..|..||||+|    |+ ++|.|||++|+.|++.++. 
T Consensus       468 ~~lgsvG~p~p------~~~vKL~dvpe~ny----------~a~~~~GEIcir----G~-~Vf~GYyK~p~~T~e~ide-  525 (691)
T KOG1256|consen  468 NVLGSVGPPVP------GNEVKLVDVPEMNY----------DADGSKGEICVR----GP-NVFMGYYKDPEKTAEAIDE-  525 (691)
T ss_pred             CCCCCcCCccc------CceEEEechHHhCc----------CcCCCcceEEEe----cc-hhceeccCChHHHhhhhcc-
Confidence            45688888776      68899877664432          244557999999    88 9999999999999999864 


Q ss_pred             ccCCCcEEEcCCeeEEecCCcEEEecCCCCC
Q psy8225         448 YSHGDAAFNTGDILIKDKFQYFYFKDRTGDA  478 (479)
Q Consensus       448 ~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~  478 (479)
                          |||++|||+|++|++|.|+|.||+|++
T Consensus       526 ----DGWLhTGDiG~~~p~G~l~IidRkK~i  552 (691)
T KOG1256|consen  526 ----DGWLHTGDIGEWDPNGTLKIIDRKKNI  552 (691)
T ss_pred             ----ccccccccceeECCCccEEEEecccce
Confidence                999999999999999999999999986

>PLN02387 long-chain-fatty-acid-CoA ligase family protein

Probab=100.00  E-value=4.6e-57  Score=470.80  Aligned_cols=409  Identities=19%  Similarity=0.168  Sum_probs=310.2

Q ss_pred             chhHHHHHHHhhcCCCccccEE-------------------------E-Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEE
Q psy8225          47 TYARPLFVRTIREVPMTGAYKY-------------------------T-VTF-QVEDHSNRIANFFKSKGLQRGDAVALF   99 (479)
Q Consensus        47 ~~l~~~l~~~~~~~p~~~a~~~-------------------------~-~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~   99 (479)
                      .|+.++|.+.++.+|+++|+.+                         . +|| |+.++++++|++|.++|+++||+|+|+
T Consensus        58 ~t~~~l~~~~~~~~pd~~al~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~lG~~~gd~Vai~  137 (696)
T PLN02387         58 TTLAALFEQSCKKYSDKRLLGTRKLISREFETSSDGRKFEKLHLGEYEWITYGQVFERVCNFASGLVALGHNKEERVAIF  137 (696)
T ss_pred             CCHHHHHHHHHHHCCCCceEEEecccccccccccCCcccccccCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEE
Confidence            6789999999999999999942                         1 799 999999999999999999999999999


Q ss_pred             cCCchHHHHHHHHhhhcCceeeeecCCcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCCcce-EEecCCCCCCCc-
Q psy8225         100 MEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGIS-LYAAGTRRKPQA-  177 (479)
Q Consensus       100 ~~n~~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-  177 (479)
                      ++|++||+++++||+++|++++||++.++.+++.++|++++++++|++.+....+.......+.++ ++++++...... 
T Consensus       138 ~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~li~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~  217 (696)
T PLN02387        138 ADTRAEWLIALQGCFRQNITVVTIYASLGEEALCHSLNETEVTTVICDSKQLKKLIDISSQLETVKRVIYMDDEGVDSDS  217 (696)
T ss_pred             cCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHccCCCEEEECHHHHHHHHHHhhccCCceEEEEECCCCchhhh
Confidence            999999999999999999999999999999999999999999999999887777666655555444 444433211000 


Q ss_pred             ----cCCCccccccccCCcCCCCCCcccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhc-CCCCCCeE
Q psy8225         178 ----KVLPSTTLLDEELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQT-GLTSDDVV  252 (479)
Q Consensus       178 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~-~~~~~d~~  252 (479)
                          ........|+++...+.......  ....++++++|+|||||||.||||++||+++...+......+ ++..+|++
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~dd~a~I~yTSGTTG~PKGV~lth~~l~~~~~~~~~~~~~~~~~d~~  295 (696)
T PLN02387        218 SLSGSSNWTVSSFSEVEKLGKENPVDP--DLPSPNDIAVIMYTSGSTGLPKGVMMTHGNIVATVAGVMTVVPKLGKNDVY  295 (696)
T ss_pred             hhhccCCcEEEEHHHHHHhhccCCCCC--CCCCccceEEEEecCCCCCCCCEEEEEcHHHHHHHHHHHhhcCCCCCCCEE
Confidence                00011223444433222111111  234678999999999999999999999999998877665443 57889999


Q ss_pred             EEeccchhhhhhHHHHHHHHhcCceEEecCCC------C--hhHHHHHHHHhcccEEEEehHHHHHHhcCCCCC------
Q psy8225         253 YTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKF------S--ASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKP------  318 (479)
Q Consensus       253 ~~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~------~--~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~------  318 (479)
                      ++.+|++|.+++.... .++..|+++.+....      +  +..++..++++++|++.++|.+++.+.+.....      
T Consensus       296 l~~lPl~Hi~~~~~~~-~~~~~g~~i~~g~~~~l~~~~~~~~~~~~~~i~~~~pT~~~~vP~~l~~l~~~~~~~~~~~~~  374 (696)
T PLN02387        296 LAYLPLAHILELAAES-VMAAVGAAIGYGSPLTLTDTSNKIKKGTKGDASALKPTLMTAVPAILDRVRDGVRKKVDAKGG  374 (696)
T ss_pred             EEECcHHHHHHHHHHH-HHHHhCCEEEECChhhhcccccccccCchhhHHHhCCcEEEehhHHHHHHHHHHHHHHhcccH
Confidence            9999999999975533 356677777654321      1  234677899999999999999998876421000      


Q ss_pred             -------------------------CC----------------CCCceeEEE--ecCCChhhHHHHHHHhCcceeeeecc
Q psy8225         319 -------------------------ED----------------TQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFYG  355 (479)
Q Consensus       319 -------------------------~~----------------~l~~lr~~~--G~~l~~~~~~~~~~~~~~~~v~~~YG  355 (479)
                                               ..                ...++|.++  |+++++++.+.++..+|+ .+++.||
T Consensus       375 ~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~i~~GGapl~~~~~~~~~~~~g~-~v~~~YG  453 (696)
T PLN02387        375 LAKKLFDIAYKRRLAAIEGSWFGAWGLEKLLWDALVFKKIRAVLGGRIRFMLSGGAPLSGDTQRFINICLGA-PIGQGYG  453 (696)
T ss_pred             HHHHHHHHHHHHHHHHhccCCcccccccchhhHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHHHcCC-CeeEeec
Confidence                                     00                015788877  788999998888878998 8999999


Q ss_pred             ccccCccccc---CCCCCCcccccCccccCCCceeeEEeCCCCC-CccccCCCccccccCCCCceEEEEeecCCcccccc
Q psy8225         356 ATEGNANLMN---ADGKVGAVGYIPYIAIPFYPVGLIKCDPETS-EPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFN  431 (479)
Q Consensus       356 ~tE~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~i~d~~~~-~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~  431 (479)
                      +||+++.++.   .+...+++|.|+|      +++++++|.+++ ..+.+        +++..|||+++    || ++|.
T Consensus       454 ~TEt~~~~~~~~~~~~~~gsvG~p~p------~~evkivd~~~~~~~~~~--------~~~p~GEi~vr----Gp-~v~~  514 (696)
T PLN02387        454 LTETCAGATFSEWDDTSVGRVGPPLP------CCYVKLVSWEEGGYLISD--------KPMPRGEIVIG----GP-SVTL  514 (696)
T ss_pred             hhhcccceeecCcccCCCCccCCCCC------ceEEEEeeccccCcccCC--------CCCCCceEEec----cC-cccc
Confidence            9999765432   1234577777665      799999984433 32211        23457999998    88 9999


Q ss_pred             cccCcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         432 GYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       432 gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                      |||++++.+.+.|.. -.+|+|||+|||+|++|+||+|+|.||+||++
T Consensus       515 GY~~~pe~T~~~f~~-d~~G~~W~~TGDig~~d~dG~l~i~gR~kd~i  561 (696)
T PLN02387        515 GYFKNQEKTDEVYKV-DERGMRWFYTGDIGQFHPDGCLEIIDRKKDIV  561 (696)
T ss_pred             hhcCCHHHHhhhhcc-ccCCCceeecCceEEECCCCcEEEEEcccceE
Confidence            999999888876631 01123599999999999999999999999985

>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated

Probab=100.00  E-value=7.2e-57  Score=458.40  Aligned_cols=399  Identities=18%  Similarity=0.209  Sum_probs=317.6

Q ss_pred             ccchhHHHHHHHhhcCCCccccEEE----Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCce
Q psy8225          45 LPTYARPLFVRTIREVPMTGAYKYT----VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVV  119 (479)
Q Consensus        45 ~~~~l~~~l~~~~~~~p~~~a~~~~----~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~  119 (479)
                      ...++.+.|.+.++++|+++|+.+.    +|| ||.++++++|+.|.+   .+||+|+++++|++++++++|||+++|++
T Consensus        17 ~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~Ty~el~~~~~~lA~~L~~---~~gd~Val~~~n~~e~~~~~lA~~~~G~v   93 (539)
T PRK06334         17 SGKTVLESFLKLCSEMTTATVCWDEQLGKLSYNQVRKAVIALATKVSK---YPDQHIGIMMPASAGAYIAYFATLLSGKI   93 (539)
T ss_pred             cCCcHHHHHHHHHHhCCCceEEEeCCCCcccHHHHHHHHHHHHHHHhh---ccCCeEEEEcCCchHHHHHHHHHHhcCCe
Confidence            3466899999999999999999875    999 999999999999987   38999999999999999999999999999


Q ss_pred             eeeecCCcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCC--cceEEecCCCCCCCccCCCccccccccCC-----c
Q psy8225         120 AAFINTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIP--GISLYAAGTRRKPQAKVLPSTTLLDEELP-----E  192 (479)
Q Consensus       120 ~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~  192 (479)
                      ++|+++.++.+++.++++.++++++|++.+....+.+......  ...++..++...        ...+.+...     .
T Consensus        94 ~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--------~~~~~~~~~~~~~~~  165 (539)
T PRK06334         94 PVMINWSQGLREVTACANLVGVTHVLTSKQLMQHLAQTHGEDAEYPFSLIYMEEVRK--------ELSFWEKCRIGIYMS  165 (539)
T ss_pred             eEecCcccchHHHHHHHHHcCCCEEEehHHHHHHHhhhhhccccccccEEEEehhhh--------hccHHHhhhhhhhhc
Confidence            9999999999999999999999999999876665544332100  112222221100        000000000     0


Q ss_pred             CCCCC--CcccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcCCCCCCeEEEeccchhhhhhHHHHHH
Q psy8225         193 VSAKS--PTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQ  270 (479)
Q Consensus       193 ~~~~~--~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~  270 (479)
                      .....  .........++++++++|||||||.||+|++||+++..........+++..+|++++.+|++|.+|+...++.
T Consensus       166 ~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~  245 (539)
T PRK06334        166 IPFEWLMRWFGVSDKDPEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKFFSPKEDDVMMSFLPPFHAYGFNSCTLF  245 (539)
T ss_pred             CCchhhhhcccCCCCCcCCEEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCCCceEEEecchHhhhhhHHHHHH
Confidence            00000  0000123467899999999999999999999999999887777777788899999999999999998777788


Q ss_pred             HHhcCceEEecC-CCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEE--ecCCChhhHHHHHHHhCc
Q psy8225         271 CLLGGSTVVIRS-KFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGL  347 (479)
Q Consensus       271 ~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~--G~~l~~~~~~~~~~~~~~  347 (479)
                      ++..|+++++.. .+++..+++.|+++++|++.++|++++.|++........+++||.++  |+++++++.+++.+.++.
T Consensus       246 ~l~~G~~vv~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~  325 (539)
T PRK06334        246 PLLSGVPVVFAYNPLYPKKIVEMIDEAKVTFLGSTPVFFDYILKTAKKQESCLPSLRFVVIGGDAFKDSLYQEALKTFPH  325 (539)
T ss_pred             HHHcCCeEEEecCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHHhhhhcccccccccEEEECCccCCHHHHHHHHHHCCC
Confidence            899999998875 57999999999999999999999999999887655555678999877  889999999999999954


Q ss_pred             ceeeeeccccccCcccccC----CCCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeec
Q psy8225         348 DRICEFYGATEGNANLMNA----DGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKE  423 (479)
Q Consensus       348 ~~v~~~YG~tE~~~~~~~~----~~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~  423 (479)
                      ..+++.||+||++..+...    ....+++|+|++      +++++++|++++.          ++++|+.|||+++   
T Consensus       326 ~~i~~~YG~TE~~~~~~~~~~~~~~~~~~vG~p~~------g~~v~i~d~~~~~----------~~~~g~~Gel~v~---  386 (539)
T PRK06334        326 IQLRQGYGTTECSPVITINTVNSPKHESCVGMPIR------GMDVLIVSEETKV----------PVSSGETGLVLTR---  386 (539)
T ss_pred             CeEEecccccccCceEEeccCCCCCCCCcCceecC------CCEEEEEcCCCCc----------cCCCCceEEEEEe---
Confidence            4899999999998665422    123355676655      7999999977666          6789999999998   


Q ss_pred             CCcccccccccCcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         424 SRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       424 ~~~~~~~~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                       |+ +++.|||++++.+...    ..+++|||+|||+|++|+||+++|.||.||++
T Consensus       387 -g~-~~~~GY~~~~~~~~~~----~~~~~~w~~TGD~g~~d~~G~l~~~GR~~d~i  436 (539)
T PRK06334        387 -GT-SLFSGYLGEDFGQGFV----ELGGETWYVTGDLGYVDRHGELFLKGRLSRFV  436 (539)
T ss_pred             -cC-cccccccCCcccccce----eeCCceeEECCCEEEECCCCeEEEEeccCCeE
Confidence             77 9999999987754311    11357899999999999999999999999985

>PRK08279 long-chain-acyl-CoA synthetase; Validated

Probab=100.00  E-value=4.7e-56  Score=459.31  Aligned_cols=425  Identities=41%  Similarity=0.712  Sum_probs=342.5

Q ss_pred             ccchhHHHHHHHhhcCCCccccEEE---Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCcee
Q psy8225          45 LPTYARPLFVRTIREVPMTGAYKYT---VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVA  120 (479)
Q Consensus        45 ~~~~l~~~l~~~~~~~p~~~a~~~~---~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~  120 (479)
                      .+.++.++|.++++++|+++|+++.   +|| ||.++++++|..|.+.|+++||+|+++++|++++++++|||+++|+++
T Consensus        35 ~~~tl~~~l~~~a~~~p~~~Ai~~~~~~~Ty~eL~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~v~~~lA~~~~G~~~  114 (600)
T PRK08279         35 SKRSLGDVFEEAAARHPDRPALLFEDQSISYAELNARANRYAHWAAARGVGKGDVVALLMENRPEYLAAWLGLAKLGAVV  114 (600)
T ss_pred             CcccHHHHHHHHHHhCCCCcEEEeCCCcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEE
Confidence            4467999999999999999999987   999 999999999999999999999999999999999999999999999999


Q ss_pred             eeecCCcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCCcce-EEecCCCCCCCccCCCccccccccCCcCCCCCCc
Q psy8225         121 AFINTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGIS-LYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPT  199 (479)
Q Consensus       121 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (479)
                      +++++.++.+++.++++.++++++|++.+....+.+......... ++..+....   .....+..+.+......... .
T Consensus       115 v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~  190 (600)
T PRK08279        115 ALLNTQQRGAVLAHSLNLVDAKHLIVGEELVEAFEEARADLARPPRLWVAGGDTL---DDPEGYEDLAAAAAGAPTTN-P  190 (600)
T ss_pred             eecCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHhhhhcccceEEEecCccc---cccccHHHHhhhcccCCccC-C
Confidence            999999999999999999999999999887766655544333222 222221110   00111112222111111110 0


Q ss_pred             ccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcCCCCCCeEEEeccchhhhhhHHHHHHHHhcCceEE
Q psy8225         200 EDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVV  279 (479)
Q Consensus       200 ~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G~~~v  279 (479)
                      ........+++++|+|||||||.||||++||+++...+......+++.++|++++.+|++|.+|+...++.++..|++++
T Consensus       191 ~~~~~~~~~~~a~il~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~l~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v  270 (600)
T PRK08279        191 ASRSGVTAKDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGFGGLLRLTPDDVLYCCLPLYHNTGGTVAWSSVLAAGATLA  270 (600)
T ss_pred             CcccCCCccccEEEEEcCCCCCCCcEEEEeHHHHHHHHHHHHHhcCCCCCcEEEEecCchhhhhHHHHHHHHHhcCcEEE
Confidence            11133456889999999999999999999999999998888888889999999999999999998877888899999999


Q ss_pred             ecCCCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEEecCCChhhHHHHHHHhCcceeeeecccccc
Q psy8225         280 IRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMIGNGLRPQVWEPFQKRFGLDRICEFYGATEG  359 (479)
Q Consensus       280 ~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~G~~l~~~~~~~~~~~~~~~~v~~~YG~tE~  359 (479)
                      +.+.+++..+++.++++++|++.++|++++.+............++|.+.|++++++++++|.+.++...+++.||+||+
T Consensus       271 ~~~~~~~~~~~~~i~~~~~t~~~~~p~l~~~l~~~~~~~~~~~~~l~~~~g~~l~~~~~~~~~~~~~~~~l~~~YG~tE~  350 (600)
T PRK08279        271 LRRKFSASRFWDDVRRYRATAFQYIGELCRYLLNQPPKPTDRDHRLRLMIGNGLRPDIWDEFQQRFGIPRILEFYAASEG  350 (600)
T ss_pred             EcCCCCHHHHHHHHHHhcceEEeehHHHHHHHHhCCCCccccCcceeEEecCCCCHHHHHHHHHHhCcceeeeeeccccc
Confidence            99999999999999999999999999999998887655544567888888999999999999999997579999999999


Q ss_pred             CcccccCCCCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCcccccccccCcchh
Q psy8225         360 NANLMNADGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNGYADKKAS  439 (479)
Q Consensus       360 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~gY~~~~~~  439 (479)
                      +.........++++|.+.+....  +..+..++.+++..+.+.++...+++.|+.|||++.+.  ++ +++.|| +++..
T Consensus       351 ~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~Gel~~~i~--~~-~~~~GY-~~~~~  424 (600)
T PRK08279        351 NVGFINVFNFDGTVGRVPLWLAH--PYAIVKYDVDTGEPVRDADGRCIKVKPGEVGLLIGRIT--DR-GPFDGY-TDPEA  424 (600)
T ss_pred             ceeecccCCCCcccccccccccc--cceeeeeccCcCceeeCCCCccccCCCCCceeEEEEec--Cc-cccccc-CCchh
Confidence            86655555566777765432211  35566677788888888888888899999999986543  66 899999 65554


Q ss_pred             H-HHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         440 E-KKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       440 ~-~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                      + +.++.+.+.++++||+|||+|++|+||++++.||.||++
T Consensus       425 t~~~~~~~~~~~~~~~~~TGDlg~~~~dG~l~~~GR~~d~i  465 (600)
T PRK08279        425 SEKKILRDVFKKGDAWFNTGDLMRDDGFGHAQFVDRLGDTF  465 (600)
T ss_pred             hHHHHhhcccCCCCceEeecceEEEcCCccEEEecccCCeE
Confidence            4 445555555668999999999999999999999999975

>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]

Probab=100.00  E-value=2.1e-57  Score=449.64  Aligned_cols=388  Identities=26%  Similarity=0.375  Sum_probs=306.3

Q ss_pred             HHHHhhcCCCccccEE-E---Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCceeeeecCCc
Q psy8225          53 FVRTIREVPMTGAYKY-T---VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQ  127 (479)
Q Consensus        53 l~~~~~~~p~~~a~~~-~---~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~l~~~~  127 (479)
                      |+++++++||++|+++ .   +|| ||.++++++|..|+++|+++||+|+++++|+++++++++||+++|++++|++|.+
T Consensus         1 f~~~a~~~pd~~a~~~~~~~~~Ty~~l~~~v~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~~A~~~~G~~~v~l~~~~   80 (417)
T PF00501_consen    1 FERQAQRYPDRIALIDDEGRSLTYKQLYERVRKLAAALRKLGVKKGDRVAILLPNSIEFVVAFLACLRAGAIPVPLDPSL   80 (417)
T ss_dssp             HHHHHHHSTTSEEEEETTTEEEEHHHHHHHHHHHHHHHHHTTSSTTSEEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS
T ss_pred             ChhHHhhCCCceEEEECCCEEEEHHHHHHHHHHHhhHHHHhCCCccccccccCCccceeeeeeccccccccccccccccc
Confidence            6889999999999999 5   999 9999999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHhccceEEEe----ChhhHHHHHHhhccCC-cceEEecCCCCCCCccCCCccccccccCCcCCCCCCcccc
Q psy8225         128 RQHILIHSIKVAECKAIIY----GAELSEALTEVKDSIP-GISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTEDI  202 (479)
Q Consensus       128 ~~~~l~~~l~~~~~~~vi~----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (479)
                      +.+++.++++.++++++|+    +......+........ ...++.++.....         ..+.+...........  
T Consensus        81 ~~~~~~~~l~~~~~~~ii~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~--  149 (417)
T PF00501_consen   81 SEDELRHILRQSGPKVIITSEAVDSEPLKKLKSIFKQEDPSSSIIILDRDDLP---------KKEALKSASLSDEPQS--  149 (417)
T ss_dssp             SHHHHHHHHHHHTESEEEECHHHSCHHHHHHHHHHTTSTTTEEEEEESHSSCT---------TCHHHHHHHHCHCSHS--
T ss_pred             ccccccccccccceeEEEEeccccccccccchhhhcccccccccccccccccc---------cccccccccccccccc--
Confidence            9999999999999999997    3322223333333222 2223333211100         0000000000000000  


Q ss_pred             cCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhh--hhcCCCCCCeEEEeccchhhhhhHHHHHHHHhcCceEEe
Q psy8225         203 KKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGR--YQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVI  280 (479)
Q Consensus       203 ~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~--~~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G~~~v~  280 (479)
                      ....++++++++|||||||.||+|.++|++++..+..+.  ...+++  |++++.+|++|.+|++..++.++..|+++++
T Consensus       150 ~~~~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~--d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~  227 (417)
T PF00501_consen  150 PEDSPDDPAFILFTSGTTGKPKGVVLTHRNLLAQARALALPEYFGLG--DRILSFLPLSHIFGLISALLAALFSGATLVL  227 (417)
T ss_dssp             TTHTTTSEEEEEEESSSSSSEEEEEEEHHHHHHHHHHHHHHHTTTTT--TEEEESS-TTSHHHHHHHHHHHHHCTSEEEE
T ss_pred             CCCCccceeEeeccccccccccccccccccccccccccccccccccC--ceEEeeccccccccccccccccccccccccc
Confidence            000468899999999999999999999999998877754  222223  6999999999999987889999999999999


Q ss_pred             cCCCC---hhHHHHHHHHhcccEEEEehHHHHHHhcCCCCC----CCCCCceeEEE--ecCCChhhHHHHHHHhCcceee
Q psy8225         281 RSKFS---ASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKP----EDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRIC  351 (479)
Q Consensus       281 ~~~~~---~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~----~~~l~~lr~~~--G~~l~~~~~~~~~~~~~~~~v~  351 (479)
                      .+...   +..+++.++++++|++.++|++++.|++..+..    ...++++|.++  |+++++++.+++++.++...++
T Consensus       228 ~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~i~  307 (417)
T PF00501_consen  228 PSPFDLFDPESLLELISRYKPTILFAVPSMLEALLQSPEEKTKISKKDLSSLRTVISGGEPLPPDLLRRLRKAFGNAPII  307 (417)
T ss_dssp             ESSHHHHHHHHHHHHHHHHTESEEEEEHHHHHHHHHHHHTTHHGTTTTGTT-SEEEEESST-CHHHHHHHHHHHTTSEEE
T ss_pred             cccccccccccchhcccccccccccccccccccccccccccccccccccccccccccccccCChhhccccccccccccce
Confidence            88654   467899999999999999999999998733222    34677899875  8999999999999999876899


Q ss_pred             eeccccccCcccccC--C---CCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCc
Q psy8225         352 EFYGATEGNANLMNA--D---GKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRA  426 (479)
Q Consensus       352 ~~YG~tE~~~~~~~~--~---~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~  426 (479)
                      +.||+||++..++..  .   .+++++|.|+|      +++++++|+++++          ++++|+.|||+++    ||
T Consensus       308 ~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~------~~~~~ivd~~~~~----------~~~~g~~Gei~i~----~~  367 (417)
T PF00501_consen  308 NLYGSTETGSIATIRPPEDDIEKPGSVGKPLP------GVEVKIVDPNTGE----------PLPPGEPGEIVIR----GP  367 (417)
T ss_dssp             EEEEEGGGSSEEEEEETTTHHSSTTSEBEEST------TEEEEEECTTTSS----------BESTTSEEEEEEE----ST
T ss_pred             ecccccccceeeeccccccccccccccccccc------ccccccccccccc----------ccccccccccccc----CC
Confidence            999999999887633  2   35677888766      7999999988887          5689999999999    88


Q ss_pred             ccccccccCcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         427 ESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       427 ~~~~~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                       +++.||+++++.+.+.|.+     +|||+|||+|++|+||+++++||+||++
T Consensus       368 -~~~~gy~~~~~~~~~~~~~-----~~~~~TGD~g~~d~~G~~~~~GR~~~~i  414 (417)
T PF00501_consen  368 -NVFSGYYNDPELTAEAFID-----DGWYRTGDLGRLDEDGYLYILGRSDDMI  414 (417)
T ss_dssp             -TSBSEETTBHHHHHHHEET-----TSEEEEEEEEEEETTSEEEEEEEGSCEE
T ss_pred             -ccceeeecccccccccccc-----ccceecceEEEECCCCeEEEEEeeCCEE
Confidence             9999999998777776541     5799999999999999999999999974

This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....

>PRK07788 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.5e-56  Score=456.97  Aligned_cols=393  Identities=21%  Similarity=0.291  Sum_probs=324.1

Q ss_pred             chhHHHHHHHhhcCCCccccEEE---Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCceeee
Q psy8225          47 TYARPLFVRTIREVPMTGAYKYT---VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAF  122 (479)
Q Consensus        47 ~~l~~~l~~~~~~~p~~~a~~~~---~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~  122 (479)
                      .++.++|++.++.+|+++|+++.   +|| ||.++++++|+.|.+.|+++||+|+++++|++++++++|||+++|++++|
T Consensus        49 ~~~~~~~~~~a~~~pd~~Al~~~~~~~Ty~el~~~~~~la~~L~~~gi~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v~  128 (549)
T PRK07788         49 GPFAGLVAHAARRAPDRAALIDERGTLTYAELDEQSNALARGLLALGVRAGDGVAVLARNHRGFVLALYAAGKVGARIIL  128 (549)
T ss_pred             chHHHHHHHHHHHCCCceEEEECCCceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCEEEE
Confidence            47899999999999999999987   999 99999999999999999999999999999999999999999999999999


Q ss_pred             ecCCcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCCcceEEecCCCCCCCccCCCccccccccCCcCCCCCCcccc
Q psy8225         123 INTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTEDI  202 (479)
Q Consensus       123 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (479)
                      +++.++.+++.++++.++++++|++.+....+..+....+.+..+........  ........+++++.......     
T Consensus       129 l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-----  201 (549)
T PRK07788        129 LNTGFSGPQLAEVAAREGVKALVYDDEFTDLLSALPPDLGRLRAWGGNPDDDE--PSGSTDETLDDLIAGSSTAP-----  201 (549)
T ss_pred             eCCCCCHHHHHHHHHhcCCcEEEECchhHHHHHhhccccccceEEEEecCccc--cCCcCcccHHHHhcCCCCCC-----
Confidence            99999999999999999999999998776666554444444444332211110  00122334555443322111     


Q ss_pred             cCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcCCCCCCeEEEeccchhhhhhHHHHHHHHhcCceEEecC
Q psy8225         203 KKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRS  282 (479)
Q Consensus       203 ~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G~~~v~~~  282 (479)
                      .....++.++++|||||||.||+|+++|+++...+......+++..++++++.+|++|.+|+. .++.++..|+++++..
T Consensus       202 ~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~-~~~~~l~~G~~~v~~~  280 (549)
T PRK07788        202 LPKPPKPGGIVILTSGTTGTPKGAPRPEPSPLAPLAGLLSRVPFRAGETTLLPAPMFHATGWA-HLTLAMALGSTVVLRR  280 (549)
T ss_pred             CCCCCCCCcEEEECCCCCCCCCEEeccCccHHHHHHHHHhhCCCCcCCeEEEccchHHHHHHH-HHHHHHHhCCEEEECC
Confidence            122356778999999999999999999999998878777778888999999999999999974 4567888999999988


Q ss_pred             CCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCC--CCCCCCceeEEE--ecCCChhhHHHHHHHhCcceeeeeccccc
Q psy8225         283 KFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEK--PEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFYGATE  358 (479)
Q Consensus       283 ~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~--~~~~l~~lr~~~--G~~l~~~~~~~~~~~~~~~~v~~~YG~tE  358 (479)
                      .+++..+++.++++++|++.++|++++.|++....  ....+++||.++  |+++++++.+++.+.++. .+++.||+||
T Consensus       281 ~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~-~l~~~YG~TE  359 (549)
T PRK07788        281 RFDPEATLEDIAKHKATALVVVPVMLSRILDLGPEVLAKYDTSSLKIIFVSGSALSPELATRALEAFGP-VLYNLYGSTE  359 (549)
T ss_pred             CCCHHHHHHHHHHhCCcEEEEHHHHHHHHHhCcccccCCCCCCceeEEEEeCCCCCHHHHHHHHHHhCc-cceeccCcch
Confidence            89999999999999999999999999999887654  444578999876  889999999999999998 8999999999


Q ss_pred             cCcccccC----CCCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCccccccccc
Q psy8225         359 GNANLMNA----DGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNGYA  434 (479)
Q Consensus       359 ~~~~~~~~----~~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~gY~  434 (479)
                      ++......    ...++++|+|.+      +++++++|++ ++          +++.|+.|||+++    |+ .++.||+
T Consensus       360 ~~~~~~~~~~~~~~~~~~vG~~~~------~~~~~i~d~~-~~----------~~~~g~~Gel~v~----g~-~~~~gY~  417 (549)
T PRK07788        360 VAFATIATPEDLAEAPGTVGRPPK------GVTVKILDEN-GN----------EVPRGVVGRIFVG----NG-FPFEGYT  417 (549)
T ss_pred             hchhhccChhhhhhcCCCcccCCC------CcEEEEECCC-cC----------CCCCCCeEEEEEe----CC-Ccccccc
Confidence            88654432    234567777665      7899999854 44          5678999999998    77 8999999


Q ss_pred             CcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         435 DKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       435 ~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                      +++...  .       .+|||+|||+|++|+||+++|.||+||++
T Consensus       418 ~~~~~~--~-------~~g~~~TGDl~~~~~~g~l~~~GR~dd~i  453 (549)
T PRK07788        418 DGRDKQ--I-------IDGLLSSGDVGYFDEDGLLFVDGRDDDMI  453 (549)
T ss_pred             CCCccc--c-------cCCceecCceEEEcCCCCEEEeccCcceE
Confidence            887541  1       27899999999999999999999999985

>TIGR02316 propion_prpE propionate--CoA ligase

Probab=100.00  E-value=4.2e-56  Score=460.96  Aligned_cols=411  Identities=19%  Similarity=0.189  Sum_probs=317.7

Q ss_pred             cccchhHHHHHHHhhcCCCccccEE--------E-Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHh
Q psy8225          44 TLPTYARPLFVRTIREVPMTGAYKY--------T-VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGL  113 (479)
Q Consensus        44 ~~~~~l~~~l~~~~~~~p~~~a~~~--------~-~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~  113 (479)
                      ...+...++|++++..+|+++|+++        . +|| ||.+++.++|++|+++|+++||+|+++++|++++++++|||
T Consensus        49 ~~~n~~~~~l~~~~~~~p~~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~n~~e~v~~~lA~  128 (628)
T TIGR02316        49 GRTNLCHNALDRHLDERGEQLALVTVSSETGQERTLTYRQLHREVNVFASALRALGVGRGDRVLIYMPMIAEAVFAMLAC  128 (628)
T ss_pred             CEeeHHHHHHHHHhCcCCCCeEEEEEcCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence            3346678999999999999999987        1 999 99999999999999999999999999999999999999999


Q ss_pred             hhcCceeeeecCCcchHHHHHHHHhccceEEEeChhh---------HHHHHHhhccC--CcceEEecCCCCCCCccCCCc
Q psy8225         114 SKIGVVAAFINTNQRQHILIHSIKVAECKAIIYGAEL---------SEALTEVKDSI--PGISLYAAGTRRKPQAKVLPS  182 (479)
Q Consensus       114 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  182 (479)
                      +++|++++|+++.++.+++.+++++++++++|+++..         .+.+.++....  ....+++++............
T Consensus       129 ~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~  208 (628)
T TIGR02316       129 ARIGAIHSVVFGGFASHSLALRIDDATPKLIVSADAGMRGGKVIPYKPLLDAAIAEAQHPPPHVLLVDRGLAPMRLIPGR  208 (628)
T ss_pred             HHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECCccccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCCcCcccCc
Confidence            9999999999999999999999999999999997532         22222222221  122333333211000000001


Q ss_pred             cccccccCCcCCCCCCcccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHH-hhhhhhhcCCCCCCeEEEeccchhh
Q psy8225         183 TTLLDEELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFM-AISGRYQTGLTSDDVVYTTLPLYHT  261 (479)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~-~~~~~~~~~~~~~d~~~~~~pl~h~  261 (479)
                      ...++++..........  .....++++++|+|||||||.||||+++|.+++.. .......++++++|++++..|++|.
T Consensus       209 ~~~~~~~~~~~~~~~~~--~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  286 (628)
T TIGR02316       209 DVDYAALRTQHEDAQVP--VEWLESNEPSYILYTSGTTGKPKGVQRDVGGYAVALALSMWAIFGIRAGQVMFSASDVGWV  286 (628)
T ss_pred             cccHHHHhhccccCCCC--ceecCCCCcEEEEECCCCCCCCceEEECCcHHHHHHHHHHHHhcCCCCCcEEEEcCCCCee
Confidence            12333333221111111  12245789999999999999999999999997543 4445556788999999999999999


Q ss_pred             hhhHHHHHHHHhcCceEEecCC----CChhHHHHHHHHhcccEEEEehHHHHHHhcCCCC--CCCCCCceeEEE--ecCC
Q psy8225         262 AGGLLGIGQCLLGGSTVVIRSK----FSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEK--PEDTQHSVKMMI--GNGL  333 (479)
Q Consensus       262 ~g~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~--~~~~l~~lr~~~--G~~l  333 (479)
                      .|+...++.++..|+++++.+.    +++..+++.++++++|++.++|++++.|.+....  ...++++||.++  |+++
T Consensus       287 ~g~~~~~~~~L~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gGe~l  366 (628)
T TIGR02316       287 VGHSYIVYAPLLAGAATVLYEGLPTNPDPGVWWSIVERYGVRTMFSAPTAIRVLKKQDAAWLRKHDLSSLHWLFLAGEPL  366 (628)
T ss_pred             ehhhHHHHHHHhccceEEEeCCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcccccCCccceeEEEEecCCC
Confidence            9887778899999999998763    4788999999999999999999999998876532  334678999877  8999


Q ss_pred             ChhhHHHHHHHhCcceeeeeccccccCcccccC-------CCCCCcccccCccccCCCceeeEEeCCCCCCccccCCCcc
Q psy8225         334 RPQVWEPFQKRFGLDRICEFYGATEGNANLMNA-------DGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLC  406 (479)
Q Consensus       334 ~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~-------~~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~  406 (479)
                      ++++.+++++.++. .+++.||+||++..+...       ....+++|+|+|      +++++++|+++|+         
T Consensus       367 ~~~~~~~~~~~~~~-~~~~~yG~TE~~~~~~~~~~~~~~~~~~~gs~G~p~~------g~~v~i~d~~~g~---------  430 (628)
T TIGR02316       367 DEPTAHWITDGLGK-PVIDNYWQTETGWPVLAIMPGLDLKPVKLGSPGLPMY------GYHLRVLDEATGR---------  430 (628)
T ss_pred             CHHHHHHHHHHhCC-CEEecccccccCceeecCCCCCCcCCCCCCCcccCcC------CceEEEEECCCCC---------
Confidence            99999999999998 899999999998543221       224466777665      7999999986676         


Q ss_pred             ccccCCCCceEEEEeecCCc--ccccccccCcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         407 IPCKAEEPGILIGMIKESRA--ESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       407 ~~~~~~~~Gel~v~~~~~~~--~~~~~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                       +|+.|+.|||+++    ||  .+.+.|||++++...+.+...+  +++||+|||+|++|+||+|+|+||.||++
T Consensus       431 -~~~~g~~Gel~v~----gp~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~TGD~g~~d~dG~l~i~GR~dd~i  498 (628)
T TIGR02316       431 -PCGPNEKGVLTVV----PPLPPGCLSTVWGDDARFLKTYWSHF--KRPLYSSFDWGIRDEDGYTFILGRTDDVI  498 (628)
T ss_pred             -CCCCCCcEEEEEe----cCCCccccccccCChHHHHHhhhhcC--CCCEEECCceEEEcCCCcEEEEEcCcceE
Confidence             5688999999998    55  2578999998765544332222  36799999999999999999999999985

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.

>PLN02654 acetate-CoA ligase

Probab=100.00  E-value=4.7e-56  Score=461.83  Aligned_cols=407  Identities=19%  Similarity=0.243  Sum_probs=313.7

Q ss_pred             chhHHHHHHHhh-cCCCccccEEE---------Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhh
Q psy8225          47 TYARPLFVRTIR-EVPMTGAYKYT---------VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSK  115 (479)
Q Consensus        47 ~~l~~~l~~~~~-~~p~~~a~~~~---------~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~  115 (479)
                      |...++|++++. .+|+++|+++.         +|| ||.+++.++|+.|++.|+++||+|+++++|++|+++++|||++
T Consensus        88 N~~~~~l~~~~~~~~~~~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~pn~~e~v~a~lA~~~  167 (666)
T PLN02654         88 NICYNCLDRNVEAGNGDKIAIYWEGNEPGFDASLTYSELLDRVCQLANYLKDVGVKKGDAVVIYLPMLMELPIAMLACAR  167 (666)
T ss_pred             eHHHHHHHHhhccCCCCCEEEEEEcCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHH
Confidence            566889998876 48999999872         999 9999999999999999999999999999999999999999999


Q ss_pred             cCceeeeecCCcchHHHHHHHHhccceEEEeChhhH---------HHHHHhhccC-----CcceEEecCCCCCC---Ccc
Q psy8225         116 IGVVAAFINTNQRQHILIHSIKVAECKAIIYGAELS---------EALTEVKDSI-----PGISLYAAGTRRKP---QAK  178 (479)
Q Consensus       116 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~-----~~~~~~~~~~~~~~---~~~  178 (479)
                      +|++++|+++.++.+++.+++++++++++|++....         ..+.......     ....++........   ...
T Consensus       168 ~Gav~vpv~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (666)
T PLN02654        168 IGAVHSVVFAGFSAESLAQRIVDCKPKVVITCNAVKRGPKTINLKDIVDAALDESAKNGVSVGICLTYENQLAMKREDTK  247 (666)
T ss_pred             cCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHHHHhccccCCCccEEEEecccccccccccc
Confidence            999999999999999999999999999999976532         1122111111     00111111110000   000


Q ss_pred             CC-CccccccccCCcCCCCCCcccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHH-HhhhhhhhcCCCCCCeEEEec
Q psy8225         179 VL-PSTTLLDEELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMF-MAISGRYQTGLTSDDVVYTTL  256 (479)
Q Consensus       179 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~-~~~~~~~~~~~~~~d~~~~~~  256 (479)
                      .. .....|+++.......   ........+++++|+|||||||.||||+++|.+++. ........++++++|++++..
T Consensus       248 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~d~~~ilyTSGTTG~PKgVv~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~  324 (666)
T PLN02654        248 WQEGRDVWWQDVVPNYPTK---CEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVYTATTFKYAFDYKPTDVYWCTA  324 (666)
T ss_pred             cccCCcccHHHHhhcCCCC---CCceecCCCCceEEEecCCCCCCCceEEecccHHHHHHHHHHHHhcCCCCCcEEEEcC
Confidence            00 0011122222111100   001234678999999999999999999999999764 344555677899999999999


Q ss_pred             cchhhhhhHHHHHHHHhcCceEEecCC----CChhHHHHHHHHhcccEEEEehHHHHHHhcCCCC--CCCCCCceeEEE-
Q psy8225         257 PLYHTAGGLLGIGQCLLGGSTVVIRSK----FSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEK--PEDTQHSVKMMI-  329 (479)
Q Consensus       257 pl~h~~g~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~--~~~~l~~lr~~~-  329 (479)
                      |++|++|..+.++.+++.|+++++.+.    +++..+++.|+++++|++.++|++++.|.+....  ...++++||.++ 
T Consensus       325 ~~~~~~g~~~~~~~~L~~G~tvvl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~Lr~i~~  404 (666)
T PLN02654        325 DCGWITGHSYVTYGPMLNGATVLVFEGAPNYPDSGRCWDIVDKYKVTIFYTAPTLVRSLMRDGDEYVTRHSRKSLRVLGS  404 (666)
T ss_pred             CchhhhhhHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhhCccccccCChhheeEEEE
Confidence            999999987888899999999998763    4789999999999999999999999999886532  334578999876 


Q ss_pred             -ecCCChhhHHHHHHHhCc--ceeeeeccccccCccccc-C----CCCCCcccccCccccCCCceeeEEeCCCCCCcccc
Q psy8225         330 -GNGLRPQVWEPFQKRFGL--DRICEFYGATEGNANLMN-A----DGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRN  401 (479)
Q Consensus       330 -G~~l~~~~~~~~~~~~~~--~~v~~~YG~tE~~~~~~~-~----~~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~  401 (479)
                       |+++++++.+++.+.+|.  ..+.+.||+||+++.+.. .    +.+++++|.|+|      +++++++|++ |+    
T Consensus       405 ~Ge~l~~~~~~~~~~~~g~~~~~i~~~yg~TE~g~~~~~~~~~~~~~~~gs~G~p~~------g~~v~i~d~~-g~----  473 (666)
T PLN02654        405 VGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFF------GVQPVIVDEK-GK----  473 (666)
T ss_pred             ecCCCCHHHHHHHHHHhCCCCCceeccccccccCCeeeccCCCCCCCCCCccCCCCC------CceEEEECCC-CC----
Confidence             899999999999999983  279999999998865432 1    345677887766      7999999854 44    


Q ss_pred             CCCccccccCCCCceEEEEeecCCcccccccccCcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         402 KDGLCIPCKAEEPGILIGMIKESRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       402 ~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                            +++.++.|||+++..  .| +++.|||++++.+...+   |...+|||+|||+|++|+||+++|+||+||++
T Consensus       474 ------~~~~~~~Gel~v~~~--~p-~~~~gy~~~~~~~~~~~---~~~~~g~~~TGD~~~~d~dG~l~i~GR~dd~I  539 (666)
T PLN02654        474 ------EIEGECSGYLCVKKS--WP-GAFRTLYGDHERYETTY---FKPFAGYYFSGDGCSRDKDGYYWLTGRVDDVI  539 (666)
T ss_pred             ------CCCCCCceEEEEcCC--Cc-hhhhhhcCChHHHHHhh---hhcCCCEEEeCceEEECCCCcEEEeeeccCeE
Confidence                  456778899999821  25 89999999987665433   33347899999999999999999999999974

>PRK07529 AMP-binding domain protein; Validated

Probab=100.00  E-value=7.9e-56  Score=458.57  Aligned_cols=408  Identities=25%  Similarity=0.344  Sum_probs=320.4

Q ss_pred             hcccchhHHHHHHHhhcCCCccccEEE-----------Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHH
Q psy8225          43 KTLPTYARPLFVRTIREVPMTGAYKYT-----------VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMW  110 (479)
Q Consensus        43 ~~~~~~l~~~l~~~~~~~p~~~a~~~~-----------~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~  110 (479)
                      +..|.++.++|.+.++.+|+++|+++.           +|| ||.+++.++|+.|+++|+++||+|+++++|++++++++
T Consensus        21 ~~~~~t~~~~l~~~a~~~p~~~Al~~~~~~~~~~~~~~~Ty~eL~~~v~~~A~~L~~~Gi~~gd~V~i~~~n~~e~~~~~  100 (632)
T PRK07529         21 RDLPASTYELLSRAAARHPDAPALSFLLDADPLDRPETWTYAELLADVTRTANLLHSLGVGPGDVVAFLLPNLPETHFAL  100 (632)
T ss_pred             hcCCCCHHHHHHHHHHHCCCCceEEeecccCCCCCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHH
Confidence            357788999999999999999999861           999 99999999999999999999999999999999999999


Q ss_pred             HHhhhcCceeeeecCCcchHHHHHHHHhccceEEEeChhh-----HHHHHHhhccCCcceE-EecCCCCCCC--cc----
Q psy8225         111 LGLSKIGVVAAFINTNQRQHILIHSIKVAECKAIIYGAEL-----SEALTEVKDSIPGISL-YAAGTRRKPQ--AK----  178 (479)
Q Consensus       111 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~-----~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~----  178 (479)
                      |||+++| +++|+++.++.+++.++++.++++++|++...     ...+..+....+.++. +.++......  ..    
T Consensus       101 lA~~~~G-i~~pi~~~~~~~~i~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  179 (632)
T PRK07529        101 WGGEAAG-IANPINPLLEPEQIAELLRAAGAKVLVTLGPFPGTDIWQKVAEVLAALPELRTVVEVDLARYLPGPKRLAVP  179 (632)
T ss_pred             HHHHHhC-EEEeCCCcCCHHHHHHHHHhcCCcEEEEeCCCCCchHHHHHHHHHhcCCcceeEEEecCccccccccccccc
Confidence            9999999 57999999999999999999999999997543     2333333444444443 2222211000  00    


Q ss_pred             -----CCCccccccccCCcCCCCCCcccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcCCCCCCeEE
Q psy8225         179 -----VLPSTTLLDEELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVY  253 (479)
Q Consensus       179 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~  253 (479)
                           .......+.+.+......... .......+++++++|||||||.||+|++||++++..+......+++..+++++
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~l  258 (632)
T PRK07529        180 LIRRKAHARILDFDAELARQPGDRLF-SGRPIGPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGALLLGLGPGDTVF  258 (632)
T ss_pred             ccccccccccCCHHHHHhcCCCcccc-ccCCCCcCceEEEEECCCccCcCCEEEEcHHHHHHHHHHHHHhcCCCCCCEEE
Confidence                 011223344433332211111 01233678999999999999999999999999998877777777888999999


Q ss_pred             EeccchhhhhhHHHHHHHHhcCceEEecCC--C-C---hhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeE
Q psy8225         254 TTLPLYHTAGGLLGIGQCLLGGSTVVIRSK--F-S---ASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKM  327 (479)
Q Consensus       254 ~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~--~-~---~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~  327 (479)
                      +.+|++|.++.+..++.++..|+++++.+.  + +   ...+++.++++++|++.++|+++..|++.... ..++++||.
T Consensus       259 ~~~pl~h~~~~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~-~~~~~slr~  337 (632)
T PRK07529        259 CGLPLFHVNALLVTGLAPLARGAHVVLATPQGYRGPGVIANFWKIVERYRINFLSGVPTVYAALLQVPVD-GHDISSLRY  337 (632)
T ss_pred             EecCchhhhHHHHHHHHHHHCCCEEEecCccccCcchHHHHHHHHHHHhCCeEEEeHHHHHHHHHhCccc-CCCccceEE
Confidence            999999999988888899999999999763  2 1   35788999999999999999999999876543 235789998


Q ss_pred             EE--ecCCChhhHHHHHHHhCcceeeeeccccccCcccccC----CCCCCcccccCccccCCCceeeEE--eCCCCCCcc
Q psy8225         328 MI--GNGLRPQVWEPFQKRFGLDRICEFYGATEGNANLMNA----DGKVGAVGYIPYIAIPFYPVGLIK--CDPETSEPI  399 (479)
Q Consensus       328 ~~--G~~l~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~----~~~~~~~g~~~~~~~~~~~~~~~i--~d~~~~~~i  399 (479)
                      ++  |+++++++.++|++.++. ++++.||+||++..+...    ..+++++|.|+|      ++.+++  +|++ |.. 
T Consensus       338 v~~gg~~l~~~l~~~~~~~~g~-~l~~~YG~TE~~~~~~~~~~~~~~~~~svG~~~p------~~~v~i~~~d~~-g~~-  408 (632)
T PRK07529        338 ALCGAAPLPVEVFRRFEAATGV-RIVEGYGLTEATCVSSVNPPDGERRIGSVGLRLP------YQRVRVVILDDA-GRY-  408 (632)
T ss_pred             EEEcCCCCCHHHHHHHHHHhCC-cEeeeecccccCcccccCCccccccCCCcccccC------CceEEEEEcCCC-Ccc-
Confidence            77  888999999999999998 999999999998665432    235677888765      455555  4543 311 


Q ss_pred             ccCCCccccccCCCCceEEEEeecCCcccccccccCcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         400 RNKDGLCIPCKAEEPGILIGMIKESRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       400 ~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                            ..+|++|+.|||+++    || +++.||++++.....++      ++|||+|||+|++|+||++++.||.||++
T Consensus       409 ------~~~~~~g~~Gel~v~----gp-~v~~GY~~~~~~~~~~~------~~gw~~TGDlg~~d~dG~l~i~GR~~d~i  471 (632)
T PRK07529        409 ------LRDCAVDEVGVLCIA----GP-NVFSGYLEAAHNKGLWL------EDGWLNTGDLGRIDADGYFWLTGRAKDLI  471 (632)
T ss_pred             ------cccCCCCCceEEEEE----CC-CccccccCCcccccccc------CCCceEcCcEEEEcCCceEEEEecccCEE
Confidence                  126789999999998    88 99999998776544332      37999999999999999999999999974

>PTZ00237 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=9.4e-56  Score=458.12  Aligned_cols=413  Identities=17%  Similarity=0.176  Sum_probs=312.5

Q ss_pred             hhhhcccchhHHHHHHHhhc--CCCccccEEE---------Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHH
Q psy8225          40 GMQKTLPTYARPLFVRTIRE--VPMTGAYKYT---------VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYV  107 (479)
Q Consensus        40 ~~~~~~~~~l~~~l~~~~~~--~p~~~a~~~~---------~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~  107 (479)
                      .++...-|+..++++++++.  +|+++|+++.         +|| ||.+++.++|++|+++|+++||+|+++++|++|++
T Consensus        52 wf~~~~~n~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GDrV~i~~~n~~e~~  131 (647)
T PTZ00237         52 WFKGGELNTCYNVLDIHVKNPLKRDQDALIYECPYLKKTIKLTYYQLYEKVCEFSRVLLNLNISKNDNVLIYMANTLEPL  131 (647)
T ss_pred             hCCCCeeeHHHHHHHHhhcccCCCCceEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHH
Confidence            44444447789999998865  7999999872         999 99999999999999999999999999999999999


Q ss_pred             HHHHHhhhcCceeeeecCCcchHHHHHHHHhccceEEEeChh---------hHHHHHHhhccCC--cceEEecCCCC---
Q psy8225         108 CMWLGLSKIGVVAAFINTNQRQHILIHSIKVAECKAIIYGAE---------LSEALTEVKDSIP--GISLYAAGTRR---  173 (479)
Q Consensus       108 ~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~---------~~~~~~~~~~~~~--~~~~~~~~~~~---  173 (479)
                      +++|||+++|++++|+++.++.+++.+++++++++++|+++.         ..+.+.++.....  ..++++.....   
T Consensus       132 ~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~  211 (647)
T PTZ00237        132 IAMLSCARIGATHCVLFDGYSVKSLIDRIETITPKLIITTNYGILNDEIITFTPNLKEAIELSTFKPSNVITLFRNDITS  211 (647)
T ss_pred             HHHHHHHHhCcEEEeeCCCCCHHHHHHHHHhcCCCEEEEcccceeCCceechHHHHHHHHhcccCCCCEEEEEEcCCccc
Confidence            999999999999999999999999999999999999999752         2223333322111  11233221100   


Q ss_pred             CCCc------cCCCccccccccCCcCCC--CCCcccccCCCCCCcEEEEEccCCCCCcceEEeehHH-HHHHhhhhhhhc
Q psy8225         174 KPQA------KVLPSTTLLDEELPEVSA--KSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVR-AMFMAISGRYQT  244 (479)
Q Consensus       174 ~~~~------~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~-l~~~~~~~~~~~  244 (479)
                      ....      ........|++++.....  ...........++++++|+|||||||.||||+++|.+ +...........
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~  291 (647)
T PTZ00237        212 ESDLKKIETIPTIPNTLSWYDEIKKIKENNQSPFYEYVPVESSHPLYILYTSGTTGNSKAVVRSNGPHLVGLKYYWRSII  291 (647)
T ss_pred             ccccccccccCCCcccccHHHHHhhhccccCCCCCCceeeCCCCcEEEEEcCCCCCCCCeEEEcCcHHHHHHHHHHHHhc
Confidence            0000      000111233433321110  0000111335678999999999999999999999998 444333334445


Q ss_pred             CCCCCCeEEEeccchhhhhhHHHHHHHHhcCceEEecCC--CC----hhHHHHHHHHhcccEEEEehHHHHHHhcCCCC-
Q psy8225         245 GLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSK--FS----ASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEK-  317 (479)
Q Consensus       245 ~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~--~~----~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~-  317 (479)
                      ....++++++..|++|+.+. ..++.++..|+++++.+.  +.    +..+++.|+++++|++.++|++++.|.+.... 
T Consensus       292 ~~~~~d~~~~~~~~~w~~~~-~~~~~~l~~G~t~v~~~~~~~~p~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~  370 (647)
T PTZ00237        292 EKDIPTVVFSHSSIGWVSFH-GFLYGSLSLGNTFVMFEGGIIKNKHIEDDLWNTIEKHKVTHTLTLPKTIRYLIKTDPEA  370 (647)
T ss_pred             CCCCCcEEEEcCCCceEeeH-HHHHHHHhCCcEEEEeCCCCCCCCCchHHHHHHHHHhCeEEEEeCHHHHHHHHhhCccc
Confidence            67778999999999998764 457789999999998763  12    67899999999999999999999999875321 


Q ss_pred             ----CCCCCCceeEEE--ecCCChhhHHHHHHHhCcceeeeeccccccCcccccC-C---CCCCcccccCccccCCCcee
Q psy8225         318 ----PEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFYGATEGNANLMNA-D---GKVGAVGYIPYIAIPFYPVG  387 (479)
Q Consensus       318 ----~~~~l~~lr~~~--G~~l~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~-~---~~~~~~g~~~~~~~~~~~~~  387 (479)
                          ...++++||.++  |+++++++.+++++.+|. ++++.||+||+++.+... +   ...+++|+|+|      +++
T Consensus       371 ~~~~~~~~l~~Lr~i~~~G~~l~~~~~~~~~~~~g~-~i~~~yG~TE~~~~~~~~~~~~~~~~~s~G~p~~------g~~  443 (647)
T PTZ00237        371 TIIRSKYDLSNLKEIWCGGEVIEESIPEYIENKLKI-KSSRGYGQTEIGITYLYCYGHINIPYNATGVPSI------FIK  443 (647)
T ss_pred             cccccccCcchheEEEecCccCCHHHHHHHHHhcCC-CEEeeechHHhChhhhccCCCCCCCCCCCccCcC------Cce
Confidence                234578999877  899999999999999997 899999999998654322 1   22367777665      789


Q ss_pred             eEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCc--ccccccccCcchhHHHHHhhhccCCCcEEEcCCeeEEec
Q psy8225         388 LIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRA--ESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDK  465 (479)
Q Consensus       388 ~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~--~~~~~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~  465 (479)
                      ++++|+ +|+          +++.|+.|||+++    +|  ++++.|||++++.+.+.|.    ..+|||+|||+|++|+
T Consensus       444 ~~i~d~-~g~----------~~~~ge~GEl~v~----~p~~p~~~~gy~~~~~~~~~~f~----~~~g~~~TGDlg~~d~  504 (647)
T PTZ00237        444 PSILSE-DGK----------ELNVNEIGEVAFK----LPMPPSFATTFYKNDEKFKQLFS----KFPGYYNSGDLGFKDE  504 (647)
T ss_pred             EEEECC-CCC----------CCCCCCceEEEEe----ccCCchhhCceeCCHHHHHHHHh----CCCCEEECCcEEEECC
Confidence            999996 455          5688999999998    54  2789999999877765443    3478999999999999


Q ss_pred             CCcEEEecCCCCCC
Q psy8225         466 FQYFYFKDRTGDAC  479 (479)
Q Consensus       466 dG~l~~~GR~~d~~  479 (479)
                      ||+++|+||+||++
T Consensus       505 dG~l~i~GR~dd~i  518 (647)
T PTZ00237        505 NGYYTIVSRSDDQI  518 (647)
T ss_pred             CCeEEEEeccCCEE
Confidence            99999999999974

>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase

Probab=100.00  E-value=1.9e-55  Score=456.73  Aligned_cols=407  Identities=21%  Similarity=0.271  Sum_probs=317.8

Q ss_pred             cchhHHHHHHHhhcCCCccccEEE---------Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhh
Q psy8225          46 PTYARPLFVRTIREVPMTGAYKYT---------VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSK  115 (479)
Q Consensus        46 ~~~l~~~l~~~~~~~p~~~a~~~~---------~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~  115 (479)
                      -|...++|+++++.+|+++|+++.         +|| ||.+++.++|+.|+++|+++||+|+++++|++++++++|||++
T Consensus        56 ~n~~~~~l~~~~~~~p~~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~  135 (625)
T TIGR02188        56 LNVSYNCVDRHLEARPDKVAIIWEGDEPGEVRKITYRELHREVCRFANVLKSLGVKKGDRVAIYMPMIPEAAIAMLACAR  135 (625)
T ss_pred             EEHHHHHHHHhhccCCCCeEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHH
Confidence            367789999999999999999862         999 9999999999999999999999999999999999999999999


Q ss_pred             cCceeeeecCCcchHHHHHHHHhccceEEEeChhh---------HHHHHHhhccCC-cce-EEecCCCCCCCccCCCccc
Q psy8225         116 IGVVAAFINTNQRQHILIHSIKVAECKAIIYGAEL---------SEALTEVKDSIP-GIS-LYAAGTRRKPQAKVLPSTT  184 (479)
Q Consensus       116 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~  184 (479)
                      +|++++|+++.++.+++.+++++++++++|+++..         ...+.+.....+ .+. +++................
T Consensus       136 ~Gav~v~i~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (625)
T TIGR02188       136 IGAIHSVVFGGFSAEALADRINDAGAKLVITADEGLRGGKVIPLKAIVDEALEKCPVSVEHVLVVRRTGNPVPWVEGRDV  215 (625)
T ss_pred             hCCEEeccCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHHhCCCCccEEEEEcCCCCCcCccccccc
Confidence            99999999999999999999999999999997642         223333333333 232 2322211100000000112


Q ss_pred             cccccCCcCCCCCCcccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhh-hhhhhcCCCCCCeEEEeccchhhhh
Q psy8225         185 LLDEELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAI-SGRYQTGLTSDDVVYTTLPLYHTAG  263 (479)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~-~~~~~~~~~~~d~~~~~~pl~h~~g  263 (479)
                      .+++++........   ......+++++|+|||||||.||||+++|.+++.... .....+++.++|++++..|++|..|
T Consensus       216 ~~~~~~~~~~~~~~---~~~~~~~~~a~il~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g  292 (625)
T TIGR02188       216 WWHDLMAKASAYCE---PEPMDSEDPLFILYTSGSTGKPKGVLHTTGGYLLYAAMTMKYVFDIKDGDIFWCTADVGWITG  292 (625)
T ss_pred             cHHHHHhhcCCCCC---ceecCCCCceEEEecCCCCCCCCeEEECccHhHHHHHHHHHhccCCCCCcEEEECCCchhhhc
Confidence            23333332211111   1335678899999999999999999999999865443 3444567889999999999999998


Q ss_pred             hHHHHHHHHhcCceEEecCC----CChhHHHHHHHHhcccEEEEehHHHHHHhcCCCC--CCCCCCceeEEE--ecCCCh
Q psy8225         264 GLLGIGQCLLGGSTVVIRSK----FSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEK--PEDTQHSVKMMI--GNGLRP  335 (479)
Q Consensus       264 ~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~--~~~~l~~lr~~~--G~~l~~  335 (479)
                      ..+.++.++..|+++++.+.    +++..+++.++++++|++.++|++++.|.+....  ....+++||.++  |+++++
T Consensus       293 ~~~~~~~~l~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~~G~~l~~  372 (625)
T TIGR02188       293 HSYIVYGPLANGATTVMFEGTPTYPDPGRFWEIIEKHKVTIFYTAPTAIRALMRLGDEWVKKHDLSSLRLLGSVGEPINP  372 (625)
T ss_pred             cHHHHHHHHHcCCeEEEECCCCCCCChhHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcccccCCccceeEEEEecCCCCH
Confidence            77778899999999998753    4789999999999999999999999999876543  234578999877  899999


Q ss_pred             hhHHHHHHHhCc--ceeeeeccccccCccccc-----CCCCCCcccccCccccCCCceeeEEeCCCCCCccccCCCcccc
Q psy8225         336 QVWEPFQKRFGL--DRICEFYGATEGNANLMN-----ADGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIP  408 (479)
Q Consensus       336 ~~~~~~~~~~~~--~~v~~~YG~tE~~~~~~~-----~~~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~  408 (479)
                      ++.+++.+.++.  .++++.||+||+++.+..     .+.+++++|+|++      +++++++| ++|+          +
T Consensus       373 ~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~~~~~~~~~~~~~~~G~p~~------g~~~~i~d-~~g~----------~  435 (625)
T TIGR02188       373 EAWMWYYKVVGKERCPIVDTWWQTETGGIMITPLPGATPTKPGSATLPFF------GIEPAVVD-EEGN----------P  435 (625)
T ss_pred             HHHHHHHHHcCCCCCceEecccccccCCceeecCCCCCCcCCCcccCCcC------CceEEEEC-CCCC----------C
Confidence            999999999873  389999999999866542     1345677777665      79999998 4455          4


Q ss_pred             cc-CCCCceEEEEeecCCc-ccccccccCcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         409 CK-AEEPGILIGMIKESRA-ESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       409 ~~-~~~~Gel~v~~~~~~~-~~~~~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                      ++ +|+.|||+++    +| ++++.|||++++.+.+.+   +...+|||+|||+|++|+||+++|+||+||++
T Consensus       436 ~~~~g~~GeL~v~----~p~p~~~~gy~~~~~~~~~~~---~~~~~g~~~TGDl~~~d~dG~l~i~GR~dd~i  501 (625)
T TIGR02188       436 VEGPGEGGYLVIK----QPWPGMLRTIYGDHERFVDTY---FSPFPGYYFTGDGARRDKDGYIWITGRVDDVI  501 (625)
T ss_pred             CCCCCCeEEEEEc----cCCCcccccccCChHHHHHHH---hccCCCEEECCceEEEcCCCcEEEEecccCEE
Confidence            56 7899999998    63 289999999986554433   22347899999999999999999999999974

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.

>PLN02860 o-succinylbenzoate-CoA ligase

Probab=100.00  E-value=8.3e-56  Score=453.78  Aligned_cols=401  Identities=20%  Similarity=0.181  Sum_probs=313.0

Q ss_pred             cccchhHHHHHHHhhcCCCccccEEE---Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCce
Q psy8225          44 TLPTYARPLFVRTIREVPMTGAYKYT---VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVV  119 (479)
Q Consensus        44 ~~~~~l~~~l~~~~~~~p~~~a~~~~---~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~  119 (479)
                      ..|.++.++|.+.++++|+++|+++.   +|| ||.++++++|++|.++|+++||+|+++++|++++++++|||+++|++
T Consensus         4 ~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~v~~~n~~~~~~~~la~~~~Gav   83 (563)
T PLN02860          4 HSQAHICQCLTRLATLRGNAVVTISGNRRRTGHEFVDGVLSLAAGLLRLGLRNGDVVAIAALNSDLYLEWLLAVACAGGI   83 (563)
T ss_pred             hhhhHHHHHHHHHHHhcCCceEEecCCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHhhccEE
Confidence            45677999999999999999999876   999 99999999999999999999999999999999999999999999999


Q ss_pred             eeeecCCcchHHHHHHHHhccceEEEeChhhHHHHHHhh-ccCCcceEEe-cCCCCCCCccCCCccccccccCCcCCCCC
Q psy8225         120 AAFINTNQRQHILIHSIKVAECKAIIYGAELSEALTEVK-DSIPGISLYA-AGTRRKPQAKVLPSTTLLDEELPEVSAKS  197 (479)
Q Consensus       120 ~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (479)
                      ++|+++.++.+++.++++++++++++++.........+. ...+.++.++ .++...............++.........
T Consensus        84 ~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (563)
T PLN02860         84 VAPLNYRWSFEEAKSAMLLVRPVMLVTDETCSSWYEELQNDRLPSLMWQVFLESPSSSVFIFLNSFLTTEMLKQRALGTT  163 (563)
T ss_pred             EEeCCcccCHHHHHHHHHhcCceEEEEecccchHHHHHhhccCCceeEEEEecCcccccccchhhccccchhccCccccc
Confidence            999999999999999999999999999876433332221 2233333222 22111000000000111111111100000


Q ss_pred             CcccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcCCCCCCeEEEeccchhhhhhHHHHHHHHhcCce
Q psy8225         198 PTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGST  277 (479)
Q Consensus       198 ~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G~~  277 (479)
                      ..  .....++++++++|||||||.||+|+++|+++..........+++..+|++++.+|++|.+|+ ..++.++..|++
T Consensus       164 ~~--~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~-~~~~~~l~~G~~  240 (563)
T PLN02860        164 EL--DYAWAPDDAVLICFTSGTTGRPKGVTISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGL-SSALAMLMVGAC  240 (563)
T ss_pred             cc--cCCCCCCCeEEEEecCCCCCCCceEEeehHHHHHHHHHHHhhcCCCCCCEEEEecCchhhccH-HHHHHHHHcCce
Confidence            00  123356889999999999999999999999998777666667788999999999999999987 457788999999


Q ss_pred             EEecCCCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCC--CCCCCceeEEE--ecCCChhhHHHHHHHhCcceeeee
Q psy8225         278 VVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKP--EDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEF  353 (479)
Q Consensus       278 ~v~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~--~~~l~~lr~~~--G~~l~~~~~~~~~~~~~~~~v~~~  353 (479)
                      +++.+.+++..+++.++++++|++.++|+++..|.+.....  ...++++|.++  |+++++++.++|++.|+..++++.
T Consensus       241 ~v~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~~  320 (563)
T PLN02860        241 HVLLPKFDAKAALQAIKQHNVTSMITVPAMMADLISLTRKSMTWKVFPSVRKILNGGGSLSSRLLPDAKKLFPNAKLFSA  320 (563)
T ss_pred             EEecCCCCHHHHHHHHHHhCCeeEEeChHHHHHHHHhhhhhhccccccceeEEEeCCCcCCHHHHHHHHHhcCCCceecC
Confidence            99999999999999999999999999999999988764332  23467899877  889999999999999954489999


Q ss_pred             ccccccCcccccCC--C------------------------CCCcccccCccccCCCceeeEEeCCCCCCccccCCCccc
Q psy8225         354 YGATEGNANLMNAD--G------------------------KVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCI  407 (479)
Q Consensus       354 YG~tE~~~~~~~~~--~------------------------~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~  407 (479)
                      ||+||+++.+....  .                        ...++|+|+|      ++++++++++             
T Consensus       321 YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~------~~~v~i~~~~-------------  381 (563)
T PLN02860        321 YGMTEACSSLTFMTLHDPTLESPKQTLQTVNQTKSSSVHQPQGVCVGKPAP------HVELKIGLDE-------------  381 (563)
T ss_pred             CCccccCcccccccccccccccchhhhhhhcccccccccccCCcccCCccC------CcEEEEecCC-------------
Confidence            99999876543211  0                        0113455544      7999988754             


Q ss_pred             cccCCCCceEEEEeecCCcccccccccCcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         408 PCKAEEPGILIGMIKESRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       408 ~~~~~~~Gel~v~~~~~~~~~~~~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                         +|+.|||+++    |+ +++.|||++++.+.+.+.     .+|||+|||+|++|+||+++|.||+||++
T Consensus       382 ---~g~~Gel~v~----g~-~~~~GY~~~~~~t~~~~~-----~~g~~~TGDl~~~d~dG~l~~~GR~~d~i  440 (563)
T PLN02860        382 ---SSRVGRILTR----GP-HVMLGYWGQNSETASVLS-----NDGWLDTGDIGWIDKAGNLWLIGRSNDRI  440 (563)
T ss_pred             ---CCceeEEEEe----cC-cccccccCCccccchhcc-----CCCeEEccceEEEcCCCCEEEeeccccee
Confidence               3568999998    88 899999999877766543     37999999999999999999999999985

>PTZ00216 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=3.9e-56  Score=465.01  Aligned_cols=403  Identities=20%  Similarity=0.190  Sum_probs=306.0

Q ss_pred             cchhHHHHHHHhhcCCCccccEE-----------------------------E-Eeh-hhHHHHHHHHHHHHHcCCCCCC
Q psy8225          46 PTYARPLFVRTIREVPMTGAYKY-----------------------------T-VTF-QVEDHSNRIANFFKSKGLQRGD   94 (479)
Q Consensus        46 ~~~l~~~l~~~~~~~p~~~a~~~-----------------------------~-~Ty-~l~~~~~~la~~L~~~gi~~gd   94 (479)
                      ..++.++|.++++.+|+++|+.+                             . +|| ||.++++++|++|.++|+++||
T Consensus        68 ~~t~~~~~~~~~~~~p~~~a~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lTy~el~~~~~~lA~~L~~~Gv~~gd  147 (700)
T PTZ00216         68 GPNFLQRLERICKERGDRRALAYRPVERVEKEVVKDADGKERTMEVTHFNETRYITYAELWERIVNFGRGLAELGLTKGS  147 (700)
T ss_pred             CCCHHHHHHHHHHhCCCCCeEEEeccccccccccccCCCccccccccccCCceEeEHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            35799999999999999999986                             2 899 9999999999999999999999


Q ss_pred             EEEEEcCCchHHHHHHHHhhhcCceeeeecCCcchHHHHHHHHhccceEEEeChhhHHHHHHhhcc--CCcceEEecCCC
Q psy8225          95 AVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDS--IPGISLYAAGTR  172 (479)
Q Consensus        95 ~V~i~~~n~~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~--~~~~~~~~~~~~  172 (479)
                      +|+|+++|++||+++++||+++|++++|+++.++.+++.+++++++++++|++......+......  .+...+++++..
T Consensus       148 ~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~lv~~~~~~~~l~~~~~~~~~~~~~ii~~~~~  227 (700)
T PTZ00216        148 NVAIYEETRWEWLASIYGIWSQSMVAATVYANLGEDALAYALRETECKAIVCNGKNVPNLLRLMKSGGMPNTTIIYLDSL  227 (700)
T ss_pred             EEEEEcCCCHHHHHHHHHHHHcCCeEEeeCCCCCHHHHHhhhhccCccEEEECHHHHHHHHHhhhhccCCceEEEEECCC
Confidence            999999999999999999999999999999999999999999999999999987765544433322  234455554432


Q ss_pred             CCCCccCCCccccccccCCcCCCC-CCcccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhc----C-C
Q psy8225         173 RKPQAKVLPSTTLLDEELPEVSAK-SPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQT----G-L  246 (479)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~----~-~  246 (479)
                      .............|++++..+... ..........++++++|+|||||||.||||++||+++++.+......+    . +
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~nl~~~~~~~~~~~~~~~~~~  307 (700)
T PTZ00216        228 PASVDTEGCRLVAWTDVVAKGHSAGSHHPLNIPENNDDLALIMYTSGTTGDPKGVMHTHGSLTAGILALEDRLNDLIGPP  307 (700)
T ss_pred             ccccccCCceEEEHHHHHHhCCccccccccCCCCCcccEEEEEEeCCCCCcCcEEEEEhHHHHHHHHHHHhhcccccCCC
Confidence            110000111233455544333110 000101334678999999999999999999999999998776655433    2 3


Q ss_pred             CCCCeEEEeccchhhhhhHHHHHHHHhcCceEEecCCCChhHHHH-------HHHHhcccEEEEehHHHHHHhcCCCC--
Q psy8225         247 TSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFWK-------DCIKYNCTVAQYIGEMCRYLLAVPEK--  317 (479)
Q Consensus       247 ~~~d~~~~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~-------~i~~~~~t~~~~~p~~l~~l~~~~~~--  317 (479)
                      ..+|++++.+|++|.+++.. ....+..|+++++.   ++..+++       .++++++|++.++|.+++.+.+....  
T Consensus       308 ~~~d~~ls~lPl~H~~~~~~-~~~~l~~G~~v~~~---~~~~l~~~~~~~~~~l~~~~pT~~~~vP~~~~~l~~~~~~~~  383 (700)
T PTZ00216        308 EEDETYCSYLPLAHIMEFGV-TNIFLARGALIGFG---SPRTLTDTFARPHGDLTEFRPVFLIGVPRIFDTIKKAVEAKL  383 (700)
T ss_pred             CCCCEEEEEChHHHHHHHHH-HHHHHHcCCEEEEC---CHHHhhhhhccccchHHHcCCcEEEechHHHHHHHHHHHHHH
Confidence            67899999999999998744 34457778877763   3444444       68889999999999999877542100  


Q ss_pred             -----------------------CCC----------------CCCceeEEE--ecCCChhhHHHHHHHhCcceeeeeccc
Q psy8225         318 -----------------------PED----------------TQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFYGA  356 (479)
Q Consensus       318 -----------------------~~~----------------~l~~lr~~~--G~~l~~~~~~~~~~~~~~~~v~~~YG~  356 (479)
                                             ...                ..+++|.++  |+++++++.++++..++  .+++.||+
T Consensus       384 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~lr~i~~GGa~l~~~~~~~~~~~~~--~l~~~YG~  461 (700)
T PTZ00216        384 PPVGSLKRRVFDHAYQSRLRALKEGKDTPYWNEKVFSAPRAVLGGRVRAMLSGGGPLSAATQEFVNVVFG--MVIQGWGL  461 (700)
T ss_pred             hccCHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHHHHHHHHhh--hHhhccCc
Confidence                                   000                015788877  88899999887777665  89999999


Q ss_pred             cccCccccc---CCCCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCcccccccc
Q psy8225         357 TEGNANLMN---ADGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNGY  433 (479)
Q Consensus       357 tE~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~gY  433 (479)
                      ||+++.+..   .+..++++|+|++      +++++++|++....         .++++..|||+++    || ++|.||
T Consensus       462 TEt~~~~~~~~~~~~~~~svG~p~~------g~evkI~d~~~~~~---------~~~~~~~GEL~vr----G~-~v~~GY  521 (700)
T PTZ00216        462 TETVCCGGIQRTGDLEPNAVGQLLK------GVEMKLLDTEEYKH---------TDTPEPRGEILLR----GP-FLFKGY  521 (700)
T ss_pred             ccccccccccCCCCCCCCCcCCcCC------CeEEEEeechhhcc---------CCCCCCCceEEEc----CC-cccchh
Confidence            999765432   1234567777665      89999998653221         2345668999998    88 999999


Q ss_pred             cCcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         434 ADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       434 ~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                      |++++.+++.|.     .+|||+|||+|++|+||+|+|+||+||++
T Consensus       522 ~~~pe~T~~~f~-----~dGw~~TGDig~~d~dG~l~i~GR~kd~i  562 (700)
T PTZ00216        522 YKQEELTREVLD-----EDGWFHTGDVGSIAANGTLRIIGRVKALA  562 (700)
T ss_pred             cCChhHhhhhcc-----ccCCeeccceEEEcCCCcEEEEEehHhhe
Confidence            999998887764     27899999999999999999999999974

>PRK08314 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=8.5e-55  Score=445.79  Aligned_cols=406  Identities=24%  Similarity=0.343  Sum_probs=330.3

Q ss_pred             cchhHHHHHHHhhcCCCccccEEE---Eeh-hhHHHHHHHHHHHHHc-CCCCCCEEEEEcCCchHHHHHHHHhhhcCcee
Q psy8225          46 PTYARPLFVRTIREVPMTGAYKYT---VTF-QVEDHSNRIANFFKSK-GLQRGDAVALFMEGQPEYVCMWLGLSKIGVVA  120 (479)
Q Consensus        46 ~~~l~~~l~~~~~~~p~~~a~~~~---~Ty-~l~~~~~~la~~L~~~-gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~  120 (479)
                      +.++.++|.+.++.+|+++|+++.   +|| ||.+++.++|..|.+. |+++||+|+++++|+++++++++||+++|+++
T Consensus         9 ~~tl~~~l~~~a~~~~~~~a~~~~~~~~Ty~~l~~~v~~~a~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~   88 (546)
T PRK08314          9 ETSLFHNLEVSARRYPDKTAIVFYGRAISYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAYYAILRANAVV   88 (546)
T ss_pred             CCCHHHHHHHHHHHcCCCcceeecCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCChHHHHHHHHHHHcCcEE
Confidence            466899999999999999999988   999 9999999999999999 99999999999999999999999999999999


Q ss_pred             eeecCCcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCCcceEEecCCCCC-CC---c--------------cCCCc
Q psy8225         121 AFINTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRK-PQ---A--------------KVLPS  182 (479)
Q Consensus       121 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~--------------~~~~~  182 (479)
                      +|++|.++.+++.++++.+++++++++.+....+...........+++...... ..   .              ....+
T Consensus        89 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (546)
T PRK08314         89 VPVNPMNREEELAHYVTDSGARVAIVGSELAPKVAPAVGNLRLRHVIVAQYSDYLPAEPEIAVPAWLRAEPPLQALAPGG  168 (546)
T ss_pred             eecCcCcCHHHHHHHHHhCCCeEEEEccchhhhHHHHhhccCcceEEEecchhhcccccccCcccccccccccccccccc
Confidence            999999999999999999999999999877665554433222111221110000 00   0              00011


Q ss_pred             cccccccCCcCCCCCCcccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcCCCCCCeEEEeccchhhh
Q psy8225         183 TTLLDEELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTA  262 (479)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~h~~  262 (479)
                      ...+++.+......    .......+++++++|||||||.||+|+++|++++..+......+++..+|++++.+|++|.+
T Consensus       169 ~~~~~~~~~~~~~~----~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~  244 (546)
T PRK08314        169 VVAWKEALAAGLAP----PPHTAGPDDLAVLPYTSGTTGVPKGCMHTHRTVMANAVGSVLWSNSTPESVVLAVLPLFHVT  244 (546)
T ss_pred             cccHHHHhcccCCC----CCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhhCCCCCceEEEEcCchHHH
Confidence            12233322221111    11334678999999999999999999999999998888777778889999999999999999


Q ss_pred             hhHHHHHHHHhcCceEEecCCCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEE--ecCCChhhHHH
Q psy8225         263 GGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEP  340 (479)
Q Consensus       263 g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~--G~~l~~~~~~~  340 (479)
                      |+...++.++..|+++++.+.+++..+++.++++++|++.++|++++.++.........++++|.++  |+++++++.++
T Consensus       245 g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~ll~~~~~~~~~~~~l~~~~~gG~~~~~~~~~~  324 (546)
T PRK08314        245 GMVHSMNAPIYAGATVVLMPRWDREAAARLIERYRVTHWTNIPTMVVDFLASPGLAERDLSSLRYIGGGGAAMPEAVAER  324 (546)
T ss_pred             HHHHHHHHHHHcCCeEEecCCCCHHHHHHHHHHhcCceecccHHHHHHHHhCCCccccCchhhheeeeccccCCHHHHHH
Confidence            9888888999999999999999999999999999999999999999998877655555678899877  88899999999


Q ss_pred             HHHHhCcceeeeeccccccCcccccCC---CCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceE
Q psy8225         341 FQKRFGLDRICEFYGATEGNANLMNAD---GKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGIL  417 (479)
Q Consensus       341 ~~~~~~~~~v~~~YG~tE~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel  417 (479)
                      +.+.++. ++++.||+||++..+...+   ...+++|.|++      +++++++|+++++          +++.|+.|||
T Consensus       325 ~~~~~~~-~~~~~YG~tE~~~~~~~~~~~~~~~~~~G~~~~------g~~~~i~d~~~~~----------~~~~g~~Gel  387 (546)
T PRK08314        325 LKELTGL-DYVEGYGLTETMAQTHSNPPDRPKLQCLGIPTF------GVDARVIDPETLE----------ELPPGEVGEI  387 (546)
T ss_pred             HHHHcCC-cEEecccccccccceecCCCcCCCCCccCcccC------CeEEEEEeCCCCc----------CCCCCCceEE
Confidence            9999998 8999999999986554322   23456677655      7999999987776          5688999999


Q ss_pred             EEEeecCCcccccccccCcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         418 IGMIKESRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       418 ~v~~~~~~~~~~~~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                      +++    |+ +++.||+++++.+++.|..  .++++||+|||+|++|++|++++.||+||++
T Consensus       388 ~v~----g~-~~~~gY~~~~~~t~~~f~~--~~~~~~~~TGDl~~~~~~g~l~~~GR~~d~i  442 (546)
T PRK08314        388 VVH----GP-QVFKGYWNRPEATAEAFIE--IDGKRFFRTGDLGRMDEEGYFFITDRLKRMI  442 (546)
T ss_pred             EEE----CC-chhccccCChhHhhhhhhh--cCCCceEecCCEEEEcCCCcEEEEecchhhE
Confidence            998    77 8999999998777765532  1345799999999999999999999999975

>PRK00174 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=1e-54  Score=451.84  Aligned_cols=405  Identities=20%  Similarity=0.240  Sum_probs=315.6

Q ss_pred             chhHHHHHHHhhcCCCccccEEE---------Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhc
Q psy8225          47 TYARPLFVRTIREVPMTGAYKYT---------VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKI  116 (479)
Q Consensus        47 ~~l~~~l~~~~~~~p~~~a~~~~---------~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~  116 (479)
                      +...++|+++++.+|+++|+++.         +|| ||.+++.++|+.|+++|+++||+|+++++|++++++++|||+++
T Consensus        67 n~~~~~l~~~~~~~p~~~Al~~~~~~~~~~~~lTy~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~  146 (637)
T PRK00174         67 NVSYNCLDRHLKTRGDKVAIIWEGDDPGDSRKITYRELHREVCRFANALKSLGVKKGDRVAIYMPMIPEAAVAMLACARI  146 (637)
T ss_pred             EHHHHHHHHhhccCCCCeEEEEECCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHc
Confidence            44578899999999999999962         999 99999999999999999999999999999999999999999999


Q ss_pred             CceeeeecCCcchHHHHHHHHhccceEEEeChhhH---------HHHHHhhccCCcce-EEecCCCCCCCccCC-Ccccc
Q psy8225         117 GVVAAFINTNQRQHILIHSIKVAECKAIIYGAELS---------EALTEVKDSIPGIS-LYAAGTRRKPQAKVL-PSTTL  185 (479)
Q Consensus       117 G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~  185 (479)
                      |++++|+++.++.+++.+++++++++++|+++...         ..+.+.....+.+. +++...... ..... .....
T Consensus       147 Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  225 (637)
T PRK00174        147 GAVHSVVFGGFSAEALADRIIDAGAKLVITADEGVRGGKPIPLKANVDEALANCPSVEKVIVVRRTGG-DVDWVEGRDLW  225 (637)
T ss_pred             CCEEEecCCCCCHHHHHHHHHhcCCcEEEEcCccccCCcccchHHHHHHHHHhCCCccEEEEEcCCCC-CcCcCCCCccc
Confidence            99999999999999999999999999999976432         23333333333333 222221110 00000 01122


Q ss_pred             ccccCCcCCCCCCcccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhh-hhhhhcCCCCCCeEEEeccchhhhhh
Q psy8225         186 LDEELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAI-SGRYQTGLTSDDVVYTTLPLYHTAGG  264 (479)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~-~~~~~~~~~~~d~~~~~~pl~h~~g~  264 (479)
                      ++++.........   ......+++++|+|||||||.||||+++|++++.... .....++++.+|++++..|++|..+.
T Consensus       226 ~~~~~~~~~~~~~---~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  302 (637)
T PRK00174        226 WHELVAGASDECE---PEPMDAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAAMTMKYVFDYKDGDVYWCTADVGWVTGH  302 (637)
T ss_pred             HHHHHhhcCCCCC---ccccCCCCcEEEEECCCCCCCCceEEeCcchhHHHHHHHHHhccCCCCCcEEEEcCCchHhhhh
Confidence            3333322111111   1234568899999999999999999999999875443 33445678889999999999999988


Q ss_pred             HHHHHHHHhcCceEEecCC----CChhHHHHHHHHhcccEEEEehHHHHHHhcCCCC--CCCCCCceeEEE--ecCCChh
Q psy8225         265 LLGIGQCLLGGSTVVIRSK----FSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEK--PEDTQHSVKMMI--GNGLRPQ  336 (479)
Q Consensus       265 ~~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~--~~~~l~~lr~~~--G~~l~~~  336 (479)
                      .+.++.++..|+++++.+.    +++..+++.|+++++|++.++|++++.|++....  ....+++||.++  |++++++
T Consensus       303 ~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~Ge~l~~~  382 (637)
T PRK00174        303 SYIVYGPLANGATTLMFEGVPNYPDPGRFWEVIDKHKVTIFYTAPTAIRALMKEGDEHPKKYDLSSLRLLGSVGEPINPE  382 (637)
T ss_pred             HHHHHHHHHcCCEEEEECCCCCCCChHHHHHHHHhcCCeEEeecHHHHHHHHhcCCcccccCCccceeEEEEeCCCCCHH
Confidence            7788899999999998652    4789999999999999999999999999876543  234578999876  8999999


Q ss_pred             hHHHHHHHhCc--ceeeeeccccccCcccccC-----CCCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccc
Q psy8225         337 VWEPFQKRFGL--DRICEFYGATEGNANLMNA-----DGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPC  409 (479)
Q Consensus       337 ~~~~~~~~~~~--~~v~~~YG~tE~~~~~~~~-----~~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~  409 (479)
                      +.+++.+.++.  .++++.||+||+++.+...     ..+++++|+|++      +++++++|++ |+          ++
T Consensus       383 ~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~vG~p~~------g~~~~i~d~~-g~----------~~  445 (637)
T PRK00174        383 AWEWYYKVVGGERCPIVDTWWQTETGGIMITPLPGATPLKPGSATRPLP------GIQPAVVDEE-GN----------PL  445 (637)
T ss_pred             HHHHHHHHhCCCCCceEecccccccCCceEecCCCCCCcCCCcccCCCC------CceEEEECCC-CC----------CC
Confidence            99999998872  3899999999998655421     234567777665      7999999854 44          56


Q ss_pred             cCCCCceEEEEeecCCc-ccccccccCcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         410 KAEEPGILIGMIKESRA-ESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       410 ~~~~~Gel~v~~~~~~~-~~~~~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                      +.|+.|||+++    || ++++.|||++++.+.+.   +|...+|||+|||+|++|+||+++|+||+||++
T Consensus       446 ~~g~~Gel~v~----g~~p~~~~gy~~~~~~~~~~---~~~~~~g~~~TGDl~~~d~dG~l~~~GR~dd~i  509 (637)
T PRK00174        446 EGGEGGNLVIK----DPWPGMMRTIYGDHERFVKT---YFSTFKGMYFTGDGARRDEDGYYWITGRVDDVL  509 (637)
T ss_pred             CCCCcEEEEEc----CCCCcccccccCCHHHHHHh---hhcCCCCEEECCceEEEcCCCcEEEEEecccEE
Confidence            88999999998    63 28999999998655433   233447899999999999999999999999985

>PLN02430 long-chain-fatty-acid-CoA ligase

Probab=100.00  E-value=4.6e-55  Score=453.12  Aligned_cols=404  Identities=18%  Similarity=0.194  Sum_probs=304.6

Q ss_pred             ccchhHHHHHHHhhcCCCccccEEE------------Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHH
Q psy8225          45 LPTYARPLFVRTIREVPMTGAYKYT------------VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWL  111 (479)
Q Consensus        45 ~~~~l~~~l~~~~~~~p~~~a~~~~------------~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~l  111 (479)
                      ...|+.++|.+.++.+|+++|+.+.            +|| |+.++++++|++|.+.|+++||+|+|+++|++||+++++
T Consensus        40 ~~~t~~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~ew~~~~l  119 (660)
T PLN02430         40 DITTAWDIFSKSVEKYPDNKMLGWRRIVDGKVGPYMWKTYKEVYEEVLQIGSALRASGAEPGSRVGIYGSNCPQWIVAME  119 (660)
T ss_pred             CCCCHHHHHHHHHHhCCCCceEEEEecCCCCCCCcEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHH
Confidence            3468999999999999999998631            699 999999999999999999999999999999999999999


Q ss_pred             HhhhcCceeeeecCCcchHHHHHHHHhccceEEEeChhhH-HHHHHhhccCCcce-EEecCCCCCCCc----cCCCcccc
Q psy8225         112 GLSKIGVVAAFINTNQRQHILIHSIKVAECKAIIYGAELS-EALTEVKDSIPGIS-LYAAGTRRKPQA----KVLPSTTL  185 (479)
Q Consensus       112 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~  185 (479)
                      ||+++|++++|+++.++.+++.+++++++++++|++.... ..+.......+.++ +++.+.......    ........
T Consensus       120 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~  199 (660)
T PLN02430        120 ACAAHSLICVPLYDTLGPGAVDYIVDHAEIDFVFVQDKKIKELLEPDCKSAKRLKAIVSFTSVTEEESDKASQIGVKTYS  199 (660)
T ss_pred             HHHHcCCeEEEeccCCCHHHHHHHHhccCCCEEEECHHHHHHHHhhhcccCCCceEEEEECCCChHHhhhhhcCCcEEEE
Confidence            9999999999999999999999999999999999987543 23322222233333 333322110000    00011234


Q ss_pred             ccccCCcCCCCCCcccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhh-----cCCCCCCeEEEeccchh
Q psy8225         186 LDEELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQ-----TGLTSDDVVYTTLPLYH  260 (479)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~-----~~~~~~d~~~~~~pl~h  260 (479)
                      |++++..+.......  ....++++++|+|||||||.||||++||+++...+......     ..+..+|++++.+|++|
T Consensus       200 ~~~~~~~~~~~~~~~--~~~~~~d~a~iiyTSGTTG~PKGV~lth~~~~~~~~~~~~~~~~~~~~~~~~d~~ls~lPl~H  277 (660)
T PLN02430        200 WIDFLHMGKENPSET--NPPKPLDICTIMYTSGTSGDPKGVVLTHEAVATFVRGVDLFMEQFEDKMTHDDVYLSFLPLAH  277 (660)
T ss_pred             HHHHHHhhccCCCCC--CCcCcCceEEEEECCCCCCCCCEEEeecHHHHHHHHHHHhhccccccCCCCCCEEEEeCcHHH
Confidence            455443332111111  23357899999999999999999999999998876654321     24678899999999999


Q ss_pred             hhhhHHHHHHHHhcCceEEecCCCChhHHHHHHHHhcccEEEEehHHHHHHhcCCC------------------------
Q psy8225         261 TAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPE------------------------  316 (479)
Q Consensus       261 ~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~------------------------  316 (479)
                      .++.... +.++..|+++++... ++..+++.+.++++|++.++|.+++.+.+...                        
T Consensus       278 ~~~~~~~-~~~l~~G~~i~~~~~-~~~~l~~~l~~~~pt~~~~vP~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  355 (660)
T PLN02430        278 ILDRMIE-EYFFRKGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFERIHEGIQKALQELNPRRRLIFNALYKYKLAW  355 (660)
T ss_pred             HHHHHHH-HHHHHcCCEEEEeCC-ChhhHHHHHHHhCCcEEEecHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Confidence            9998654 456788999887643 77889999999999999999999987654200                        


Q ss_pred             -------C--CC-CC-----------CCceeEEE--ecCCChhhHHHHHHHhCcceeeeeccccccCcccc-cCC---CC
Q psy8225         317 -------K--PE-DT-----------QHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFYGATEGNANLM-NAD---GK  369 (479)
Q Consensus       317 -------~--~~-~~-----------l~~lr~~~--G~~l~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~-~~~---~~  369 (479)
                             .  .. .+           -.++|.++  |+++++++.+.+ +.++...+++.||+||+++.++ +.+   ..
T Consensus       356 ~~~~~~~~~~~~~~d~l~~~~i~~~~G~~lr~~~~gga~l~~~~~~~~-~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~  434 (660)
T PLN02430        356 MNRGYSHKKASPMADFLAFRKVKAKLGGRLRLLISGGAPLSTEIEEFL-RVTSCAFVVQGYGLTETLGPTTLGFPDEMCM  434 (660)
T ss_pred             HhcCCCCCCcchhHHHHHHHHHHHHhCCeEEEEEECCCCCCHHHHHHH-HHhcCCCeeeecchhhhhhceEeeccccCCC
Confidence                   0  00 00           15788877  788999986554 5555437999999999876543 221   24


Q ss_pred             CCcccccCccccCCCceeeEEeC-CCCCCccccCCCccccccCCCCceEEEEeecCCcccccccccCcchhHHHHHhhhc
Q psy8225         370 VGAVGYIPYIAIPFYPVGLIKCD-PETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNGYADKKASEKKILRNVY  448 (479)
Q Consensus       370 ~~~~g~~~~~~~~~~~~~~~i~d-~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~gY~~~~~~~~~~~~~~~  448 (479)
                      ++++|.|.+      ++++++.| ++.+..         +++.+..|||+++    || ++|.|||++++.+++.+.   
T Consensus       435 ~gsvG~p~~------~~evki~d~~~~g~~---------~~~~~~~GEi~vr----g~-~v~~GY~~~~e~t~~~~~---  491 (660)
T PLN02430        435 LGTVGAPAV------YNELRLEEVPEMGYD---------PLGEPPRGEICVR----GK-CLFSGYYKNPELTEEVMK---  491 (660)
T ss_pred             CCCccCCCC------ceEEEEEEcCCcCcc---------cCCCCCcceEEec----CC-CccccccCChHHhhhhhh---
Confidence            678888765      78888876 233321         3455668999998    88 999999999988887664   


Q ss_pred             cCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         449 SHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       449 ~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                         +|||+|||+|++|+||+|+|.||+||++
T Consensus       492 ---dGw~~TGDig~~d~dG~l~i~gR~kd~i  519 (660)
T PLN02430        492 ---DGWFHTGDIGEILPNGVLKIIDRKKNLI  519 (660)
T ss_pred             ---ccceeccceEEECCCCcEEEEEcccccE
Confidence               8999999999999999999999999974

>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed

Probab=100.00  E-value=1.3e-54  Score=443.77  Aligned_cols=395  Identities=21%  Similarity=0.250  Sum_probs=322.1

Q ss_pred             cchhHHHHHHHhhcCCCccccEE--------E-Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhh
Q psy8225          46 PTYARPLFVRTIREVPMTGAYKY--------T-VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSK  115 (479)
Q Consensus        46 ~~~l~~~l~~~~~~~p~~~a~~~--------~-~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~  115 (479)
                      ..++.++|++.++.+|+++|+++        . +|| ||.++++++|++|.+.|+++||+|+++++|++++++++|||++
T Consensus        23 ~~~l~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~Val~~~n~~e~~~~~la~~~  102 (547)
T PRK13295         23 DRTINDDLDACVASCPDKTAVTAVRLGTGAPRRFTYRELAALVDRVAVGLARLGVGRGDVVSCQLPNWWEFTVLYLACSR  102 (547)
T ss_pred             CCCHHHHHHHHHHHCCCceEEEecCCCccccceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHHHh
Confidence            45689999999999999999986        3 999 9999999999999999999999999999999999999999999


Q ss_pred             cCceeeeecCCcchHHHHHHHHhccceEEEeChhh-----HHHHHHhhccCCcce-EEecCCCCCCCccCCCcccccccc
Q psy8225         116 IGVVAAFINTNQRQHILIHSIKVAECKAIIYGAEL-----SEALTEVKDSIPGIS-LYAAGTRRKPQAKVLPSTTLLDEE  189 (479)
Q Consensus       116 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~-----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  189 (479)
                      +|++++|++|.++.+++.++++.++++++++++..     .+.+.++....+.++ ++..+...         ...+.++
T Consensus       103 ~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~  173 (547)
T PRK13295        103 IGAVLNPLMPIFRERELSFMLKHAESKVLVVPKTFRGFDHAAMARRLRPELPALRHVVVVGGDG---------ADSFEAL  173 (547)
T ss_pred             cCcEEeccccccCHHHHHHHHHhcCceEEEEeccccCcchHHHHHHHhhhCCCcceEEEecCCC---------ccCHHHH
Confidence            99999999999999999999999999999998753     222333333333333 22222111         1112222


Q ss_pred             CCcC-----CCCCCcccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcCCCCCCeEEEeccchhhhhh
Q psy8225         190 LPEV-----SAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGG  264 (479)
Q Consensus       190 ~~~~-----~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~  264 (479)
                      +...     ..............+++++++|||||||.||+|+++|+++...+......+++..++++++.+|++|..|+
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~  253 (547)
T PRK13295        174 LITPAWEQEPDAPAILARLRPGPDDVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAERLGLGADDVILMASPMAHQTGF  253 (547)
T ss_pred             hhCCccccccccccccccCCCCCcceeEEEeCCCCCCCCCEEEeccHHHHHHHHHHHHHhCCCCCCeEEEecCchhhhhH
Confidence            2111     00001111123456889999999999999999999999999888877777888999999999999999998


Q ss_pred             HHHHHHHHhcCceEEecCCCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEE--ecCCChhhHHHHH
Q psy8225         265 LLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQ  342 (479)
Q Consensus       265 ~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~--G~~l~~~~~~~~~  342 (479)
                      +..++.++..|+++++.+.+++..+++.++++++|++.++|+++..|..........+++||.++  |+++++++.+++.
T Consensus       254 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~  333 (547)
T PRK13295        254 MYGLMMPVMLGATAVLQDIWDPARAAELIRTEGVTFTMASTPFLTDLTRAVKESGRPVSSLRTFLCAGAPIPGALVERAR  333 (547)
T ss_pred             HHHHHHHHHcCCeEEeCCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhcccccCCCcccceEEEEecCCCCHHHHHHHH
Confidence            88889999999999999889999999999999999999999999999887665556678899877  8999999999999


Q ss_pred             HHhCcceeeeeccccccCcccccCCC-----CCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceE
Q psy8225         343 KRFGLDRICEFYGATEGNANLMNADG-----KVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGIL  417 (479)
Q Consensus       343 ~~~~~~~v~~~YG~tE~~~~~~~~~~-----~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel  417 (479)
                      +.++. ++++.||+||++........     ..+++|+|.+      +++++++|++ +.          +++.|+.|||
T Consensus       334 ~~~~~-~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~------~~~v~i~d~~-~~----------~~~~g~~Gel  395 (547)
T PRK13295        334 AALGA-KIVSAWGMTENGAVTLTKLDDPDERASTTDGCPLP------GVEVRVVDAD-GA----------PLPAGQIGRL  395 (547)
T ss_pred             HHhCC-CeEEeccCCCCCCeeeccCCCcchhccCccccccC------CcEEEEECCC-CC----------CCCCCCCCeE
Confidence            99988 99999999999865543221     2345566554      7999999865 44          5688999999


Q ss_pred             EEEeecCCcccccccccCcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         418 IGMIKESRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       418 ~v~~~~~~~~~~~~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                      +++    |+ +++.||+++++.+...       .+|||+|||+|++|++|++++.||.||++
T Consensus       396 ~v~----g~-~~~~gY~~~~~~t~~~-------~~g~~~TGD~~~~~~~g~l~~~gR~~~~i  445 (547)
T PRK13295        396 QVR----GC-SNFGGYLKRPQLNGTD-------ADGWFDTGDLARIDADGYIRISGRSKDVI  445 (547)
T ss_pred             EEE----cC-cccccccCCccccccC-------CCCCeecceEEEEcCCceEEEEeccCCeE
Confidence            998    77 8999999987766532       27899999999999999999999999974

>PLN02246 4-coumarate--CoA ligase

Probab=100.00  E-value=1.5e-54  Score=442.65  Aligned_cols=396  Identities=22%  Similarity=0.284  Sum_probs=326.0

Q ss_pred             chhHHHHHHHhhcCCCccccEEE-----Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCcee
Q psy8225          47 TYARPLFVRTIREVPMTGAYKYT-----VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVA  120 (479)
Q Consensus        47 ~~l~~~l~~~~~~~p~~~a~~~~-----~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~  120 (479)
                      .++.+++.+++..+|+++|+++.     +|| ||.++++++|+.|.+.|+++||+|+++++|+++++++++||+++|+++
T Consensus        23 ~~~~~~l~~~~~~~~~~~a~~~~~~~~~~ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~~~~~~~~~~la~~~~G~~~  102 (537)
T PLN02246         23 LPLHDYCFERLSEFSDRPCLIDGATGRVYTYADVELLSRRVAAGLHKLGIRQGDVVMLLLPNCPEFVLAFLGASRRGAVT  102 (537)
T ss_pred             CcHHHHHHHHHHhCCCCeEEEecCCCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHHHHcCEEE
Confidence            45889999999999999999873     999 999999999999999999999999999999999999999999999999


Q ss_pred             eeecCCcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCCcceEEecCCCCCCCccCCCccccccccCCcCCCCCCcc
Q psy8225         121 AFINTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTE  200 (479)
Q Consensus       121 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (479)
                      +|++|.++.+++..+++.++++++|++......+...... +.+.++.++...       .....+.++........+  
T Consensus       103 v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~-~~~~~i~~~~~~-------~~~~~~~~~~~~~~~~~~--  172 (537)
T PLN02246        103 TTANPFYTPAEIAKQAKASGAKLIITQSCYVDKLKGLAED-DGVTVVTIDDPP-------EGCLHFSELTQADENELP--  172 (537)
T ss_pred             ecCCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHHhhc-CCceEEEeCCCC-------CCceeHHHHhcCCCCCCC--
Confidence            9999999999999999999999999988776665554322 234444443221       111222222221111111  


Q ss_pred             cccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhh----hcCCCCCCeEEEeccchhhhhhHHHHHHHHhcCc
Q psy8225         201 DIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRY----QTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGS  276 (479)
Q Consensus       201 ~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~----~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G~  276 (479)
                       .....++++++++|||||||.||+|+++|+++.........    .+++..+|++++.+|++|.+++...++.++..|+
T Consensus       173 -~~~~~~~~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~  251 (537)
T PLN02246        173 -EVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYSLNSVLLCGLRVGA  251 (537)
T ss_pred             -CCCCCccCEEEEEeCCCCCCCCceEEEeHHHHHHHHHHHhhccccccCCCCCcEEEEeechHHHHHHHHHHHHHHhcCC
Confidence             12345788999999999999999999999999877654432    4668899999999999999998777788899999


Q ss_pred             eEEecCCCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEE--ecCCChhhHHHHHHHhCcceeeeec
Q psy8225         277 TVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFY  354 (479)
Q Consensus       277 ~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~--G~~l~~~~~~~~~~~~~~~~v~~~Y  354 (479)
                      ++++.+.+++..+++.++++++|++.++|+++..|.+........++++|.++  |+++++++.+.+++.++...+++.|
T Consensus       252 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~Y  331 (537)
T PLN02246        252 AILIMPKFEIGALLELIQRHKVTIAPFVPPIVLAIAKSPVVEKYDLSSIRMVLSGAAPLGKELEDAFRAKLPNAVLGQGY  331 (537)
T ss_pred             EEEEeCCCCHHHHHHHHHHhCceEEEcchHHHHHHhcCccccccCccceeEEEEecCcCCHHHHHHHHHHcCCCeEeccc
Confidence            99999999999999999999999999999999999887665555678899877  8889999999999999655899999


Q ss_pred             cccccCcccccC--------CCCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCc
Q psy8225         355 GATEGNANLMNA--------DGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRA  426 (479)
Q Consensus       355 G~tE~~~~~~~~--------~~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~  426 (479)
                      |+||++.+++..        ..+++++|+|++      +++++++|+++++          +++.|+.|||+++    |+
T Consensus       332 G~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~------~~~~~i~d~~~~~----------~~~~g~~Gel~v~----g~  391 (537)
T PLN02246        332 GMTEAGPVLAMCLAFAKEPFPVKSGSCGTVVR------NAELKIVDPETGA----------SLPRNQPGEICIR----GP  391 (537)
T ss_pred             cccccCcccccccccCCCCccccCCccccccC------CcEEEEecCCCCC----------cCCCCCceEEEEE----CC
Confidence            999998654321        234566777665      7999999977766          6689999999998    77


Q ss_pred             ccccccccCcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         427 ESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       427 ~~~~~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                       .++.||+++++.+...++     .+|||+|||+|++|+||++++.||.||++
T Consensus       392 -~~~~GY~~~~~~~~~~~~-----~~~~~~TGD~~~~~~~g~l~~~GR~dd~i  438 (537)
T PLN02246        392 -QIMKGYLNDPEATANTID-----KDGWLHTGDIGYIDDDDELFIVDRLKELI  438 (537)
T ss_pred             -chhccccCCchhhhhccc-----CCCCeeecceEEEeCCCeEEEEecccceE
Confidence             899999998877765543     37899999999999999999999999975

>PRK04319 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=2.1e-54  Score=444.29  Aligned_cols=398  Identities=24%  Similarity=0.295  Sum_probs=322.4

Q ss_pred             cchhHHHHHHHhh-cCCCccccEEE-------Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhc
Q psy8225          46 PTYARPLFVRTIR-EVPMTGAYKYT-------VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKI  116 (479)
Q Consensus        46 ~~~l~~~l~~~~~-~~p~~~a~~~~-------~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~  116 (479)
                      -+.+.+++++++. .+|+++|+.+.       +|| ||.++++++|.+|.++|+++||+|+++++|++++++++|||+++
T Consensus        42 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~la~~~~  121 (570)
T PRK04319         42 VNIAYEAIDRHADGGRKDKVALRYLDASRKEKYTYKELKELSNKFANVLKELGVEKGDRVFIFMPRIPELYFALLGALKN  121 (570)
T ss_pred             eeHHHHHHHHhhccCCCCceEEEEECCCCceeecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHc
Confidence            3667789999887 57999999863       999 99999999999999999999999999999999999999999999


Q ss_pred             CceeeeecCCcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCCcce-EEecCCCCCCCccCCCccccccccCCcCCC
Q psy8225         117 GVVAAFINTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGIS-LYAAGTRRKPQAKVLPSTTLLDEELPEVSA  195 (479)
Q Consensus       117 G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (479)
                      |++++|+++.++.+++.++++.++++++|++.........  ...+..+ ++..+....    .......+.+++.....
T Consensus       122 G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~--~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~  195 (570)
T PRK04319        122 GAIVGPLFEAFMEEAVRDRLEDSEAKVLITTPALLERKPA--DDLPSLKHVLLVGEDVE----EGPGTLDFNALMEQASD  195 (570)
T ss_pred             CcEEcccccccCHHHHHHHHHccCCcEEEEChhhhhccch--hcCCCceEEEEECCCcC----CCcCccCHHHHHhhcCC
Confidence            9999999999999999999999999999998765433221  1233322 333322110    11122334443332221


Q ss_pred             CCCcccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcCCCCCCeEEEeccchhhhhhHHHHHHHHhcC
Q psy8225         196 KSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGG  275 (479)
Q Consensus       196 ~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G  275 (479)
                      ...   .....++++++++|||||||.||+|+++|+++...+......+++..+|++++..|++|.+|....++.++..|
T Consensus       196 ~~~---~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~l~~G  272 (570)
T PRK04319        196 EFD---IEWTDREDGAILHYTSGSTGKPKGVLHVHNAMLQHYQTGKYVLDLHEDDVYWCTADPGWVTGTSYGIFAPWLNG  272 (570)
T ss_pred             cCC---ccccCCCCCEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhcCCCCCceEEecCChHHhhCchHHHHHHHhcC
Confidence            111   12345678999999999999999999999999988877777788899999999999999999888888999999


Q ss_pred             ceEEecC-CCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCC--CCCCCCceeEEE--ecCCChhhHHHHHHHhCccee
Q psy8225         276 STVVIRS-KFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEK--PEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRI  350 (479)
Q Consensus       276 ~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~--~~~~l~~lr~~~--G~~l~~~~~~~~~~~~~~~~v  350 (479)
                      +++++.. .+++..+++.|+++++|++.++|++++.|.+....  ....+++||.++  |+++++++.+++++.++. ++
T Consensus       273 ~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~g~-~i  351 (570)
T PRK04319        273 ATNVIDGGRFSPERWYRILEDYKVTVWYTAPTAIRMLMGAGDDLVKKYDLSSLRHILSVGEPLNPEVVRWGMKVFGL-PI  351 (570)
T ss_pred             ceEEEECCCCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhcCCcccccCCcccceEEEEcccCCCHHHHHHHHHHhCC-Ce
Confidence            9998865 68999999999999999999999999999876432  234578899877  889999999999999998 89


Q ss_pred             eeeccccccCccccc-C---CCCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCc
Q psy8225         351 CEFYGATEGNANLMN-A---DGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRA  426 (479)
Q Consensus       351 ~~~YG~tE~~~~~~~-~---~~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~  426 (479)
                      ++.||+||++..+.. .   ...++++|+|+|      +++++++|++ +.          ++++|+.|||++++.  ++
T Consensus       352 ~~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~------g~~~~i~d~~-~~----------~~~~g~~Gel~i~~~--~~  412 (570)
T PRK04319        352 HDNWWMTETGGIMIANYPAMDIKPGSMGKPLP------GIEAAIVDDQ-GN----------ELPPNRMGNLAIKKG--WP  412 (570)
T ss_pred             EeceeecccCCEEEecCCCCCCCCCcCcCCCC------CCEEEEECCC-CC----------CCCCCCceEEEEcCC--CC
Confidence            999999999865432 1   235677787665      7899999855 33          458899999999831  26


Q ss_pred             ccccccccCcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         427 ESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       427 ~~~~~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                       +++.||+++++.+.+.++      +|||+|||+|++|+||++++.||+||++
T Consensus       413 -~~~~GY~~~~~~~~~~~~------~gw~~TGDl~~~~~~g~l~~~GR~~d~i  458 (570)
T PRK04319        413 -SMMRGIWNNPEKYESYFA------GDWYVSGDSAYMDEDGYFWFQGRVDDVI  458 (570)
T ss_pred             -hHHhHhcCCHHHhhhhhc------CCceEeCcEEEECCCeeEEEEecCCCEE
Confidence             899999999888876654      7899999999999999999999999974

>PRK08180 feruloyl-CoA synthase; Reviewed

Probab=100.00  E-value=2.4e-54  Score=446.62  Aligned_cols=393  Identities=18%  Similarity=0.180  Sum_probs=303.9

Q ss_pred             ccchhHHHHHHHhhcCCCccccEE-------E-Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhh
Q psy8225          45 LPTYARPLFVRTIREVPMTGAYKY-------T-VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSK  115 (479)
Q Consensus        45 ~~~~l~~~l~~~~~~~p~~~a~~~-------~-~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~  115 (479)
                      .+.++.++|++++..+|+++|+++       . +|| ||.++++++|++|.+.|+++||+|+++++|+++|++++|||++
T Consensus        37 ~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~  116 (614)
T PRK08180         37 YPRRLTDRLVHWAQEAPDRVFLAERGADGGWRRLTYAEALERVRAIAQALLDRGLSAERPLMILSGNSIEHALLALAAMY  116 (614)
T ss_pred             cCccHHHHHHHHHHHCCCCceeeeccCCCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHHH
Confidence            356789999999999999999985       2 999 9999999999999999999999999999999999999999999


Q ss_pred             cCceeeeecCCcc-----hHHHHHHHHhccceEEEeChh--hHHHHHHhhccCCcceEEecCCCCCCCccCCCccccccc
Q psy8225         116 IGVVAAFINTNQR-----QHILIHSIKVAECKAIIYGAE--LSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDE  188 (479)
Q Consensus       116 ~G~~~v~l~~~~~-----~~~l~~~l~~~~~~~vi~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (479)
                      +|++++|++|.++     .+++.+++++++++++|++..  ....+.....  ....++.......     ......+++
T Consensus       117 ~Gav~vpl~~~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~-----~~~~~~~~~  189 (614)
T PRK08180        117 AGVPYAPVSPAYSLVSQDFGKLRHVLELLTPGLVFADDGAAFARALAAVVP--ADVEVVAVRGAVP-----GRAATPFAA  189 (614)
T ss_pred             cCCeEeeeccccccccCCHHHHHHHHhcCCCcEEEEcCHHHHHHHHhhhcc--CCceEEEecCCCC-----CcccccHHH
Confidence            9999999999988     799999999999999999753  2222221111  1223333221110     001123444


Q ss_pred             cCCcCCCCCCcccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcCCC--CCCeEEEeccchhhhhhHH
Q psy8225         189 ELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLT--SDDVVYTTLPLYHTAGGLL  266 (479)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~--~~d~~~~~~pl~h~~g~~~  266 (479)
                      ++................++++++|+|||||||.||||++||+++...+......+...  .++++++.+|++|.+|+..
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~lPl~h~~g~~~  269 (614)
T PRK08180        190 LLATPPTAAVDAAHAAVGPDTIAKFLFTSGSTGLPKAVINTHRMLCANQQMLAQTFPFLAEEPPVLVDWLPWNHTFGGNH  269 (614)
T ss_pred             HhccccccchhhhccCCCcCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHhhccccCCCCcEEEEecchHHHhhHHH
Confidence            43321111000001234568999999999999999999999999998877766655553  5689999999999999877


Q ss_pred             HHHHHHhcCceEEecC-CCCh---hHHHHHHHHhcccEEEEehHHHHHHhcCCCC----CCCCCCceeEEE--ecCCChh
Q psy8225         267 GIGQCLLGGSTVVIRS-KFSA---SNFWKDCIKYNCTVAQYIGEMCRYLLAVPEK----PEDTQHSVKMMI--GNGLRPQ  336 (479)
Q Consensus       267 ~~~~~l~~G~~~v~~~-~~~~---~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~----~~~~l~~lr~~~--G~~l~~~  336 (479)
                      .++.++..|+++++.+ .+++   ..+++.++++++|++.++|++++.|++....    ....+++||.++  |++++++
T Consensus       270 ~~~~~l~~G~~v~~~~~~~~~~~~~~~l~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~lr~v~~gGa~l~~~  349 (614)
T PRK08180        270 NLGIVLYNGGTLYIDDGKPTPGGFDETLRNLREISPTVYFNVPKGWEMLVPALERDAALRRRFFSRLKLLFYAGAALSQD  349 (614)
T ss_pred             HHHHHHhcCCEEEEeCCCccchhHHHHHHHHHHhCCcEEechHHHHHHHHHHHHhchhhhhhhccceeEEEEccCCCCHH
Confidence            8888999999999876 3444   4678889999999999999999888764321    223468999887  8889999


Q ss_pred             hHHHHHHH----hCc-ceeeeeccccccCccccc---CCCCCCcccccCccccCCCceeeEEeCCCCCCccccCCCcccc
Q psy8225         337 VWEPFQKR----FGL-DRICEFYGATEGNANLMN---ADGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIP  408 (479)
Q Consensus       337 ~~~~~~~~----~~~-~~v~~~YG~tE~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~  408 (479)
                      +.+++.+.    +|. ..+++.||+||++++++.   ...+++++|+|+|      +++++++|+               
T Consensus       350 ~~~~~~~~~~~~~g~~~~l~~~YG~TE~~~~~~~~~~~~~~~~svG~p~p------g~~v~i~d~---------------  408 (614)
T PRK08180        350 VWDRLDRVAEATCGERIRMMTGLGMTETAPSATFTTGPLSRAGNIGLPAP------GCEVKLVPV---------------  408 (614)
T ss_pred             HHHHHHHHHHhhcCCCceeeeeecccccCCceEecccccCCCCcccCccC------CcEEEEecC---------------
Confidence            99999875    342 279999999999865542   2345678888765      788888763               


Q ss_pred             ccCCCCceEEEEeecCCcccccccccCcchhHHHHHhhhccCCCcEEEcCCeeEE----ecCCcEEEecCCCCC
Q psy8225         409 CKAEEPGILIGMIKESRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIK----DKFQYFYFKDRTGDA  478 (479)
Q Consensus       409 ~~~~~~Gel~v~~~~~~~~~~~~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~----d~dG~l~~~GR~~d~  478 (479)
                         |..|||+++    |+ ++|.|||++++.+.+.|+     .+|||+|||+|++    |+||+|+|+||+||+
T Consensus       409 ---~~~GEi~vr----g~-~v~~GY~~~p~~t~~~~~-----~dgw~~TGDlg~~~~~~d~~g~l~i~GR~~d~  469 (614)
T PRK08180        409 ---GGKLEVRVK----GP-NVTPGYWRAPELTAEAFD-----EEGYYRSGDAVRFVDPADPERGLMFDGRIAED  469 (614)
T ss_pred             ---CCCcEEEEe----cC-ccchhhcCChhHhHhhcc-----cCCceeccceEEecCCcCCCCceEEecchhhh
Confidence               236999998    88 899999999888877664     3799999999999    468999999999875

>PRK10524 prpE propionyl-CoA synthetase; Provisional

Probab=100.00  E-value=4.4e-54  Score=446.80  Aligned_cols=409  Identities=20%  Similarity=0.220  Sum_probs=313.2

Q ss_pred             cchhHHHHHHHhhcCCCccccEEE---------Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhh
Q psy8225          46 PTYARPLFVRTIREVPMTGAYKYT---------VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSK  115 (479)
Q Consensus        46 ~~~l~~~l~~~~~~~p~~~a~~~~---------~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~  115 (479)
                      .|...++|+++++.+|+++|+++.         +|| ||.+++.++|+.|+++|+++||+|+++++|++++++++|||++
T Consensus        52 ~n~~~~~l~~~~~~~p~~~A~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~  131 (629)
T PRK10524         52 TNLCHNAVDRHLAKRPEQLALIAVSTETDEERTYTFRQLHDEVNRMAAMLRSLGVQRGDRVLIYMPMIAEAAFAMLACAR  131 (629)
T ss_pred             eeHHHHHHHHhhccCCCCeEEEEEcCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHH
Confidence            366789999999999999999861         999 9999999999999999999999999999999999999999999


Q ss_pred             cCceeeeecCCcchHHHHHHHHhccceEEEeChhh---------HHHHHHhhccC--CcceEEecCCCCCCCccCCCccc
Q psy8225         116 IGVVAAFINTNQRQHILIHSIKVAECKAIIYGAEL---------SEALTEVKDSI--PGISLYAAGTRRKPQAKVLPSTT  184 (479)
Q Consensus       116 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  184 (479)
                      +|++++|+++.++.+++.+++++++++++|+++..         .+.+.++....  ....++++...............
T Consensus       132 ~Gav~v~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~  211 (629)
T PRK10524        132 IGAIHSVVFGGFASHSLAARIDDAKPVLIVSADAGSRGGKVVPYKPLLDEAIALAQHKPRHVLLVDRGLAPMARVAGRDV  211 (629)
T ss_pred             hCcEEEeeCCCCCHHHHHHHHHhcCCcEEEEccCcccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCCcCcccCCcc
Confidence            99999999999999999999999999999996531         22333332222  12233333321100000000112


Q ss_pred             cccccCCcCCCCCCcccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHh-hhhhhhcCCCCCCeEEEeccchhhhh
Q psy8225         185 LLDEELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMA-ISGRYQTGLTSDDVVYTTLPLYHTAG  263 (479)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~-~~~~~~~~~~~~d~~~~~~pl~h~~g  263 (479)
                      .+.++..........  ......+++++++|||||||.||||+++|.+++... ......++++++|++++..|++|..+
T Consensus       212 ~~~~~~~~~~~~~~~--~~~~~~~d~a~il~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  289 (629)
T PRK10524        212 DYATLRAQHLGARVP--VEWLESNEPSYILYTSGTTGKPKGVQRDTGGYAVALATSMDTIFGGKAGETFFCASDIGWVVG  289 (629)
T ss_pred             cHHHHHhcCCCCCCC--ceeeCCCCceEEEeecCCCCCCceEEECCcHHHHHHHHHHHHhcCCCCCCEEEEcCCCCeecc
Confidence            233332221111111  022356889999999999999999999999875443 33444567889999999999999988


Q ss_pred             hHHHHHHHHhcCceEEecC----CCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCC--CCCCCCceeEEE--ecCCCh
Q psy8225         264 GLLGIGQCLLGGSTVVIRS----KFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEK--PEDTQHSVKMMI--GNGLRP  335 (479)
Q Consensus       264 ~~~~~~~~l~~G~~~v~~~----~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~--~~~~l~~lr~~~--G~~l~~  335 (479)
                      ..+.++.++..|+++++.+    .+++..+++.++++++|++.++|++++.|.+....  ...++++||.++  |+++++
T Consensus       290 ~~~~~~~~l~~G~~~v~~~g~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~~Ge~l~~  369 (629)
T PRK10524        290 HSYIVYAPLLAGMATIMYEGLPTRPDAGIWWRIVEKYKVNRMFSAPTAIRVLKKQDPALLRKHDLSSLRALFLAGEPLDE  369 (629)
T ss_pred             chHHHHHHHhCCCEEEEECCCCCCCChHHHHHHHHHcCceEEEeCHHHHHHHHhcCcccccccChhheeEEEEeCCCCCH
Confidence            7777889999999998865    34788999999999999999999999998876432  334578999877  899999


Q ss_pred             hhHHHHHHHhCcceeeeeccccccCccccc-C------CCCCCcccccCccccCCCceeeEEeCCCCCCccccCCCcccc
Q psy8225         336 QVWEPFQKRFGLDRICEFYGATEGNANLMN-A------DGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIP  408 (479)
Q Consensus       336 ~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~-~------~~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~  408 (479)
                      ++.+++.+.++. ++++.||+||++..+.. .      ..+++++|+|++      +++++++|+++|+          +
T Consensus       370 ~~~~~~~~~~~~-~v~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~G~p~~------g~~~~i~d~~~g~----------~  432 (629)
T PRK10524        370 PTASWISEALGV-PVIDNYWQTETGWPILAIARGVEDRPTRLGSPGVPMY------GYNVKLLNEVTGE----------P  432 (629)
T ss_pred             HHHHHHHHhcCC-CeEeccccccccchhhcCCCCcccCcCCCCCcccCcC------CceEEEEeCCCCC----------C
Confidence            999999999998 89999999999843321 1      223466677655      7999999975666          5


Q ss_pred             ccCCCCceEEEEeecCCc--ccccccccCcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         409 CKAEEPGILIGMIKESRA--ESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       409 ~~~~~~Gel~v~~~~~~~--~~~~~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                      |+.|+.|||+++    ||  .+++.|||++++...+.+-..+  ++|||+|||+|++|+||+++|+||.||++
T Consensus       433 ~~~g~~Gel~i~----gp~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~TGDl~~~d~dG~l~i~GR~dd~i  499 (629)
T PRK10524        433 CGPNEKGVLVIE----GPLPPGCMQTVWGDDDRFVKTYWSLF--GRQVYSTFDWGIRDADGYYFILGRTDDVI  499 (629)
T ss_pred             CCCCCcEEEEEc----CCCChhhcCCccCChHHHHHhhhccC--CCcEEEcCCcEEEcCCCcEEEEEEecCeE
Confidence            788999999998    55  2578899998754433221111  36899999999999999999999999974

>PLN02574 4-coumarate--CoA ligase-like

Probab=100.00  E-value=2.4e-54  Score=442.67  Aligned_cols=393  Identities=20%  Similarity=0.209  Sum_probs=311.3

Q ss_pred             HHHHHHHhhcCCCccccEEE-----Eeh-hhHHHHHHHHHHHHH-cCCCCCCEEEEEcCCchHHHHHHHHhhhcCceeee
Q psy8225          50 RPLFVRTIREVPMTGAYKYT-----VTF-QVEDHSNRIANFFKS-KGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAF  122 (479)
Q Consensus        50 ~~~l~~~~~~~p~~~a~~~~-----~Ty-~l~~~~~~la~~L~~-~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~  122 (479)
                      ..++.+  ..+|+++|+++.     +|| ||.++++++|++|++ .|+++||+|+++++|++++++++|||+++|++++|
T Consensus        44 ~~l~~~--~~~~~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~~G~~~gd~V~i~~~n~~~~~~~~la~~~~G~v~v~  121 (560)
T PLN02574         44 SFIFSH--HNHNGDTALIDSSTGFSISYSELQPLVKSMAAGLYHVMGVRQGDVVLLLLPNSVYFPVIFLAVLSLGGIVTT  121 (560)
T ss_pred             HHHhcC--cccCCCCEEEECCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCcchHHHHHHHHHHhCeEEeC
Confidence            345554  678999999975     999 999999999999999 89999999999999999999999999999999999


Q ss_pred             ecCCcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCCcceEEecCCCCCCCccCCCccccccccCCcCCCCCCcccc
Q psy8225         123 INTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTEDI  202 (479)
Q Consensus       123 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (479)
                      ++|..+.+++.++++.+++++++++.+....+...     ...++.+........ .......+.+++........   .
T Consensus       122 l~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~  192 (560)
T PLN02574        122 MNPSSSLGEIKKRVVDCSVGLAFTSPENVEKLSPL-----GVPVIGVPENYDFDS-KRIEFPKFYELIKEDFDFVP---K  192 (560)
T ss_pred             cCcccCHHHHHHHHHhcCCEEEEECHHHHHHHHhc-----CCcEEecCccccccc-CccCcccHHHHhhcCCcccc---c
Confidence            99999999999999999999999988765544321     122222211100000 00111223333322211111   1


Q ss_pred             cCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhh----hcC-CCCCCeEEEeccchhhhhhHHHHHHHHhcCce
Q psy8225         203 KKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRY----QTG-LTSDDVVYTTLPLYHTAGGLLGIGQCLLGGST  277 (479)
Q Consensus       203 ~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~----~~~-~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G~~  277 (479)
                      ....++++++++|||||||.||||+++|+++...+.....    ... ...++++++.+|++|.+|+...++.++..|++
T Consensus       193 ~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~  272 (560)
T PLN02574        193 PVIKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYEYPGSDNVYLAALPMFHIYGLSLFVVGLLSLGST  272 (560)
T ss_pred             CCCCcCCEEEEEcCCCccCCCcEEEEeHHHHHHHHHHHHhccccccccCCCCcEEEEecchHHHHHHHHHHHHHHhcCCE
Confidence            2345688999999999999999999999999887665432    122 23567889999999999987777788889999


Q ss_pred             EEecCCCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCC-CCCCCCceeEEE--ecCCChhhHHHHHHHhCcceeeeec
Q psy8225         278 VVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEK-PEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFY  354 (479)
Q Consensus       278 ~v~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~-~~~~l~~lr~~~--G~~l~~~~~~~~~~~~~~~~v~~~Y  354 (479)
                      +++.+.+++..+++.++++++|++..+|++++.|.+.... ....++++|.++  |+++++++++++.+.++...+++.|
T Consensus       273 ~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~v~~~Y  352 (560)
T PLN02574        273 IVVMRRFDASDMVKVIDRFKVTHFPVVPPILMALTKKAKGVCGEVLKSLKQVSCGAAPLSGKFIQDFVQTLPHVDFIQGY  352 (560)
T ss_pred             EEEecCCCHHHHHHHHHHcCCeEEecCCHHHHHHHhCccccccCccccceEEEEecccCCHHHHHHHHHHCCCCcEEecc
Confidence            9999999999999999999999999999999999887543 334578888876  7899999999999998544899999


Q ss_pred             cccccCcccccC-----CCCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCcccc
Q psy8225         355 GATEGNANLMNA-----DGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESH  429 (479)
Q Consensus       355 G~tE~~~~~~~~-----~~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~  429 (479)
                      |+||++.++...     ..+++++|.+.+      +++++|+|+++++          +++.|+.|||+++    |+ ++
T Consensus       353 G~tE~~~~~~~~~~~~~~~~~~~vG~~~~------~~~v~i~d~~~g~----------~~~~g~~Gei~v~----g~-~~  411 (560)
T PLN02574        353 GMTESTAVGTRGFNTEKLSKYSSVGLLAP------NMQAKVVDWSTGC----------LLPPGNCGELWIQ----GP-GV  411 (560)
T ss_pred             cccccCceeecCCCccccCCCCceeeeCC------CcEEEEEeCCCCc----------CCCCCCCeEEEEE----Cc-ch
Confidence            999998654321     134566777655      7999999987776          6689999999998    88 89


Q ss_pred             cccccCcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         430 FNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       430 ~~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                      +.||+++++.+.+.+.     .+|||+|||+|++|+||++++.||+||++
T Consensus       412 ~~GY~~~~~~t~~~~~-----~~g~~~TGDlg~~~~~G~l~i~GR~~d~i  456 (560)
T PLN02574        412 MKGYLNNPKATQSTID-----KDGWLRTGDIAYFDEDGYLYIVDRLKEII  456 (560)
T ss_pred             hhhhcCChhHhhhhcc-----CCCCcccceEEEEECCCeEEEEecchhhe
Confidence            9999999887766553     37999999999999999999999999985

>PRK05605 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2.2e-54  Score=444.91  Aligned_cols=433  Identities=19%  Similarity=0.218  Sum_probs=332.0

Q ss_pred             cceeeeeecCCCcccHHHHHHhhhhcccchhHHHHHHHhhcCCCccccEEE---Eeh-hhHHHHHHHHHHHHHcCCCCCC
Q psy8225          19 KAGMAAIVDTENSLDLKQLISGMQKTLPTYARPLFVRTIREVPMTGAYKYT---VTF-QVEDHSNRIANFFKSKGLQRGD   94 (479)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~p~~~a~~~~---~Ty-~l~~~~~~la~~L~~~gi~~gd   94 (479)
                      ..+|+++.+..+--+...+.....+..+.++.++++++++++|+++|+++.   +|| ||.++++++|+.|.+.|+++||
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~a~~~~~~~~Ty~ql~~~~~~~A~~L~~~gi~~gd   83 (573)
T PRK05605          4 SQEMSAFADKPWLQSYAPWTPHDLDYGDTTLVDLYDNAVARFGDRPALDFFGATTTYAELGKQVRRAAAGLRALGVRPGD   83 (573)
T ss_pred             hHHHHHHhcCCchhhcCCCCCcccCCCcCCHHHHHHHHHHHCCCCeEEEeCCCcccHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            345677765553322222211111112357999999999999999999987   999 9999999999999999999999


Q ss_pred             EEEEEcCCchHHHHHHHHhhhcCceeeeecCCcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCCcceEEecCCCC-
Q psy8225          95 AVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRR-  173 (479)
Q Consensus        95 ~V~i~~~n~~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  173 (479)
                      +|+++++|+++++++++||+++|++++|++|.++.+++.+++++++++++|++......+.++......-.++..+... 
T Consensus        84 ~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  163 (573)
T PRK05605         84 RVAIVLPNCPQHIVAFYAVLRLGAVVVEHNPLYTAHELEHPFEDHGARVAIVWDKVAPTVERLRRTTPLETIVSVNMIAA  163 (573)
T ss_pred             EEEEECCCCHHHHHHHHHHHhcCcEEeecCcCCCHHHHHHHHhccCCcEEEechhhHHHHHhhhhccccceeEeeecccc
Confidence            9999999999999999999999999999999999999999999999999999877655554443322211122211000 


Q ss_pred             -CCCc-------------------cCCCccccccccCCcCCCCC-CcccccCCCCCCcEEEEEccCCCCCcceEEeehHH
Q psy8225         174 -KPQA-------------------KVLPSTTLLDEELPEVSAKS-PTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVR  232 (479)
Q Consensus       174 -~~~~-------------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~  232 (479)
                       ....                   ........|+++........ ..........+++++++|||||||.||+|.++|++
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~  243 (573)
T PRK05605        164 MPLLQRLALRLPIPALRKARAALTGPAPGTVPWETLVDAAIGGDGSDVSHPRPTPDDVALILYTSGTTGKPKGAQLTHRN  243 (573)
T ss_pred             cccccccccccccccccccccccccCCCcceeHHHHhhccccccccccCCCCCCCCCEEEEEcCCCCCCCCcEEEEecHH
Confidence             0000                   00001122333222211100 00111234578999999999999999999999999


Q ss_pred             HHHHhhhhhhhcC--CCCCCeEEEeccchhhhhhHHHHHHHHhcCceEEecCCCChhHHHHHHHHhcccEEEEehHHHHH
Q psy8225         233 AMFMAISGRYQTG--LTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRY  310 (479)
Q Consensus       233 l~~~~~~~~~~~~--~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~  310 (479)
                      +...+......+.  ...++++++.+|++|.+|+...+..++..|+++++.+.+++..+++.++++++|++.++|++++.
T Consensus       244 l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~  323 (573)
T PRK05605        244 LFANAAQGKAWVPGLGDGPERVLAALPMFHAYGLTLCLTLAVSIGGELVLLPAPDIDLILDAMKKHPPTWLPGVPPLYEK  323 (573)
T ss_pred             HHHHHHHHHhhccccCCCCcEEEEecChHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCEEEEchHHHHHH
Confidence            9877654433222  23478999999999999987778888999999999888899999999999999999999999999


Q ss_pred             HhcCCCCCCCCCCceeEEE--ecCCChhhHHHHHHHhCcceeeeeccccccCcccccCC----CCCCcccccCccccCCC
Q psy8225         311 LLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFYGATEGNANLMNAD----GKVGAVGYIPYIAIPFY  384 (479)
Q Consensus       311 l~~~~~~~~~~l~~lr~~~--G~~l~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~----~~~~~~g~~~~~~~~~~  384 (479)
                      |.+........++++|.++  |+++++++.+++.+.++. ++++.||+||+++.+....    .+++++|.|.+      
T Consensus       324 l~~~~~~~~~~~~~lr~i~~gg~~l~~~~~~~~~~~~~~-~i~~~YG~TE~~~~~~~~~~~~~~~~~~~G~~~~------  396 (573)
T PRK05605        324 IAEAAEERGVDLSGVRNAFSGAMALPVSTVELWEKLTGG-LLVEGYGLTETSPIIVGNPMSDDRRPGYVGVPFP------  396 (573)
T ss_pred             HHhCccccCCCchhccEEEECCCcCCHHHHHHHHHHhCC-CeecccccchhchhhhcCCcccCCcCCccccCCC------
Confidence            9987766666788999887  788999999999999987 8999999999987654322    23466777655      


Q ss_pred             ceeeEEeCCCC-CCccccCCCccccccCCCCceEEEEeecCCcccccccccCcchhHHHHHhhhccCCCcEEEcCCeeEE
Q psy8225         385 PVGLIKCDPET-SEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIK  463 (479)
Q Consensus       385 ~~~~~i~d~~~-~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~  463 (479)
                      +++++++|+++ +.          +++.|+.|||+++    |+ .++.||++++..+.+.|.      +|||+|||+|++
T Consensus       397 ~~~~~i~d~~~~~~----------~~~~g~~Gel~v~----~~-~~~~gy~~~~~~~~~~~~------~g~~~TGD~~~~  455 (573)
T PRK05605        397 DTEVRIVDPEDPDE----------TMPDGEEGELLVR----GP-QVFKGYWNRPEETAKSFL------DGWFRTGDVVVM  455 (573)
T ss_pred             CCEEEEEcCCCCCc----------cCCCCCeeEEEEe----cC-chhhhhcCChhHhhhccc------CCCcccCCEEEE
Confidence            78999999775 34          5688999999998    77 899999998877766553      579999999999


Q ss_pred             ecCCcEEEecCCCCCC
Q psy8225         464 DKFQYFYFKDRTGDAC  479 (479)
Q Consensus       464 d~dG~l~~~GR~~d~~  479 (479)
                      |++|++++.||.||++
T Consensus       456 ~~~g~l~i~gR~dd~i  471 (573)
T PRK05605        456 EEDGFIRIVDRIKELI  471 (573)
T ss_pred             cCCCcEEEEeccccce
Confidence            9999999999999985

>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional

Probab=100.00  E-value=2.1e-53  Score=433.76  Aligned_cols=400  Identities=27%  Similarity=0.410  Sum_probs=324.5

Q ss_pred             ccchhHHHHHHHhhcCCCccccEEE---Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCcee
Q psy8225          45 LPTYARPLFVRTIREVPMTGAYKYT---VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVA  120 (479)
Q Consensus        45 ~~~~l~~~l~~~~~~~p~~~a~~~~---~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~  120 (479)
                      .+.++.++|+++++.+|+++|+++.   +|| ||.++++++|..|.+.|+++|++|+++++|++++++++|||+++|+++
T Consensus        19 ~~~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~v~~la~~L~~~gi~~g~~V~v~~~n~~~~~~~~lA~~~~G~~~   98 (542)
T PRK06155         19 SERTLPAMLARQAERYPDRPLLVFGGTRWTYAEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEFLDVFLGCAWLGAIA   98 (542)
T ss_pred             cccCHHHHHHHHHHHCCCCeEEEeCCccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHHhCCEE
Confidence            4467899999999999999999987   999 999999999999999999999999999999999999999999999999


Q ss_pred             eeecCCcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCCcc-eEEecCCCCCCCccCCCcccccccc-CCcCCCCCC
Q psy8225         121 AFINTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGI-SLYAAGTRRKPQAKVLPSTTLLDEE-LPEVSAKSP  198 (479)
Q Consensus       121 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  198 (479)
                      +|+++.++.+++.++++.+++++++++.+....+.+.......+ +++.++.....  ..   ...+... ....... .
T Consensus        99 vpl~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~~~-~  172 (542)
T PRK06155         99 VPINTALRGPQLEHILRNSGARLLVVEAALLAALEAADPGDLPLPAVWLLDAPASV--SV---PAGWSTAPLPPLDAP-A  172 (542)
T ss_pred             EEeccccCHHHHHHHHHhcCceEEEEChhhHHHHHHhcccccCcceEEEecCcccc--cc---ccccchhhhcccCCC-C
Confidence            99999999999999999999999999987766665543322222 23333322110  00   0001000 0000000 0


Q ss_pred             cccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcCCCCCCeEEEeccchhhhhhHHHHHHHHhcCceE
Q psy8225         199 TEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTV  278 (479)
Q Consensus       199 ~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G~~~  278 (479)
                        ......++++++++|||||||.||+|+++|.++..........++++.++++++.+|++|..++. .++.++..|+++
T Consensus       173 --~~~~~~~~~~a~il~TSGTTG~PK~V~~t~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~~~~-~~~~~l~~G~~~  249 (542)
T PRK06155        173 --PAAAVQPGDTAAILYTSGTTGPSKGVCCPHAQFYWWGRNSAEDLEIGADDVLYTTLPLFHTNALN-AFFQALLAGATY  249 (542)
T ss_pred             --CCCCCCCCCeEEEEECCCCCCCCcEEEEEHHHHHHHHHHHHHhcCCCCCCEEEEecCHHHHHHHH-HHHHHHHcCceE
Confidence              01234568899999999999999999999999988777667778889999999999999999874 567899999999


Q ss_pred             EecCCCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEEecCCChhhHHHHHHHhCcceeeeeccccc
Q psy8225         279 VIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMIGNGLRPQVWEPFQKRFGLDRICEFYGATE  358 (479)
Q Consensus       279 v~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~G~~l~~~~~~~~~~~~~~~~v~~~YG~tE  358 (479)
                      ++.+.+++..+++.|+++++|++.++|+++..|.+.........+++|.++++.+++++.+++++.++. ++++.||+||
T Consensus       250 ~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~-~v~~~YG~tE  328 (542)
T PRK06155        250 VLEPRFSASGFWPAVRRHGATVTYLLGAMVSILLSQPARESDRAHRVRVALGPGVPAALHAAFRERFGV-DLLDGYGSTE  328 (542)
T ss_pred             EeeCCCCHHHHHHHHHHhCCcEEEchHHHHHHHHcCcCccccccCceEEEEEcCCCHHHHHHHHHHcCC-CEEeeecccc
Confidence            999999999999999999999999999999999887766555678899888666889999999999998 8999999999


Q ss_pred             cCcccccC--CCCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCcccccccccCc
Q psy8225         359 GNANLMNA--DGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNGYADK  436 (479)
Q Consensus       359 ~~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~gY~~~  436 (479)
                      ++.++...  ...++++|.+.+      +++++++|++ ++          +++.|+.|||++++.  .+.+++.||+++
T Consensus       329 ~~~~~~~~~~~~~~~~vG~~~~------~~~~~i~d~~-~~----------~~~~g~~Gei~v~~~--~~~~~~~GY~~~  389 (542)
T PRK06155        329 TNFVIAVTHGSQRPGSMGRLAP------GFEARVVDEH-DQ----------ELPDGEPGELLLRAD--EPFAFATGYFGM  389 (542)
T ss_pred             cCccccCCCCCCCCCCcCccCC------CceEEEECCC-CC----------CCCCCCceEEEEecC--CccccchhhcCC
Confidence            98765532  345567777655      7888888855 44          568899999999832  122589999998


Q ss_pred             chhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         437 KASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       437 ~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                      ++.+.+.+.      ++||+|||+|++|+||+++|.||.||++
T Consensus       390 ~~~~~~~~~------~~~~~TGD~~~~~~dG~l~i~GR~~d~i  426 (542)
T PRK06155        390 PEKTVEAWR------NLWFHTGDRVVRDADGWFRFVDRIKDAI  426 (542)
T ss_pred             HHHHHHhhc------CCcEeccceEEEcCCceEEEEecCCCEE
Confidence            877776553      7999999999999999999999999974

>PRK13382 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=8.5e-54  Score=436.41  Aligned_cols=388  Identities=17%  Similarity=0.216  Sum_probs=315.4

Q ss_pred             cchhHHHHHHHhhcCCCccccEEE---Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCceee
Q psy8225          46 PTYARPLFVRTIREVPMTGAYKYT---VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAA  121 (479)
Q Consensus        46 ~~~l~~~l~~~~~~~p~~~a~~~~---~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v  121 (479)
                      +.++.++|.++++++|+++|+++.   +|| ||.++++++|++|.++|+++||+|+++++|+++++++++||+++|++++
T Consensus        42 ~~~~~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~A~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v  121 (537)
T PRK13382         42 GMGPTSGFAIAAQRCPDRPGLIDELGTLTWRELDERSDALAAALQALPIGEPRVVGIMCRNHRGFVEALLAANRIGADIL  121 (537)
T ss_pred             cCCHHHHHHHHHHhCCCCeEEEeCCCeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCcHHHHHHHHHHHHcCcEEE
Confidence            356899999999999999999986   999 9999999999999999999999999999999999999999999999999


Q ss_pred             eecCCcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCCcce-EEecCCCCCCCccCCCccccccccCCcCCCCCCcc
Q psy8225         122 FINTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGIS-LYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTE  200 (479)
Q Consensus       122 ~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (479)
                      |+++.++.+++.++++.++++++|++......+.......+... ++...+..        ....++.+........   
T Consensus       122 pl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~---  190 (537)
T PRK13382        122 LLNTSFAGPALAEVVTREGVDTVIYDEEFSATVDRALADCPQATRIVAWTDED--------HDLTVEVLIAAHAGQR---  190 (537)
T ss_pred             ecCcccCHHHHHHHHHhcCCCEEEEchhhHHHHHHHHhhccccceEEEecCCc--------ccccHHHHhhccCcCC---
Confidence            99999999999999999999999999876665544433332221 22221110        0111222222111111   


Q ss_pred             cccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcCCCCCCeEEEeccchhhhhhHHHHHHHHhcCceEEe
Q psy8225         201 DIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVI  280 (479)
Q Consensus       201 ~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G~~~v~  280 (479)
                        .....++.++++|||||||.||||+++|.++..........+.+..++++++.+|++|.+|+ ..++.++..|+++++
T Consensus       191 --~~~~~~~~~~il~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~-~~~~~~l~~g~~~~~  267 (537)
T PRK13382        191 --PEPTGRKGRVILLTSGTTGTPKGARRSGPGGIGTLKAILDRTPWRAEEPTVIVAPMFHAWGF-SQLVLAASLACTIVT  267 (537)
T ss_pred             --CCCCCCCCeEEEECCCCCCCCCEEEeccchHHHHHHHHHHhhCCCCCCeEEEecChHhhhHH-HHHHHHHhcCcEEEE
Confidence              11245778999999999999999999999888877777777778899999999999999987 567788889999999


Q ss_pred             cCCCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCC--CCCCCCceeEEE--ecCCChhhHHHHHHHhCcceeeeeccc
Q psy8225         281 RSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEK--PEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFYGA  356 (479)
Q Consensus       281 ~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~--~~~~l~~lr~~~--G~~l~~~~~~~~~~~~~~~~v~~~YG~  356 (479)
                      ...+++..+++.|+++++|++..+|++++.|.+....  ...+.+++|.++  |+++++++++.|.+.+|. .+++.||+
T Consensus       268 ~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~-~i~~~YG~  346 (537)
T PRK13382        268 RRRFDPEATLDLIDRHRATGLAVVPVMFDRIMDLPAEVRNRYSGRSLRFAAASGSRMRPDVVIAFMDQFGD-VIYNNYNA  346 (537)
T ss_pred             CCCcCHHHHHHHHHHhCCEEEEehHHHHHHHHcCCchhcccCCccceeEEEEcCCCCCHHHHHHHHHHcCC-cEEecccc
Confidence            8899999999999999999999999999999876532  223456888776  899999999999999998 89999999


Q ss_pred             cccCcccccC----CCCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCccccccc
Q psy8225         357 TEGNANLMNA----DGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNG  432 (479)
Q Consensus       357 tE~~~~~~~~----~~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~g  432 (479)
                      ||++..+...    ...++++|+|++      ++.++++|++ ++          +++.|+.|||+++    |+ +++.|
T Consensus       347 TE~~~~~~~~~~~~~~~~~~vG~p~~------~~~~~i~d~~-~~----------~~~~g~~GEl~v~----g~-~~~~g  404 (537)
T PRK13382        347 TEAGMIATATPADLRAAPDTAGRPAE------GTEIRILDQD-FR----------EVPTGEVGTIFVR----ND-TQFDG  404 (537)
T ss_pred             cccCcceecChhHhccCCCCccccCc------CcEEEEECCC-CC----------CCCCCCeeEEEEE----cC-CcccC
Confidence            9998665432    234567777665      7999999864 44          5688999999998    77 89999


Q ss_pred             ccCcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         433 YADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       433 Y~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                      |+  ++.+..+.       +|||+|||++++|+||+++|.||+||++
T Consensus       405 Y~--~~~~~~~~-------~g~~~TGDl~~~~~~g~l~~~GR~dd~i  442 (537)
T PRK13382        405 YT--SGSTKDFH-------DGFMASGDVGYLDENGRLFVVGRDDEMI  442 (537)
T ss_pred             cc--ccchhhcc-------CCCEeeCceEEEeCCCcEEEecccccee
Confidence            98  33343321       6899999999999999999999999985

>PRK07656 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2e-53  Score=432.64  Aligned_cols=402  Identities=22%  Similarity=0.285  Sum_probs=333.2

Q ss_pred             cchhHHHHHHHhhcCCCccccEEE---Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCceee
Q psy8225          46 PTYARPLFVRTIREVPMTGAYKYT---VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAA  121 (479)
Q Consensus        46 ~~~l~~~l~~~~~~~p~~~a~~~~---~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v  121 (479)
                      +.++.+.|.+.++.+|+++|+++.   +|| ||.+++.++|..|.+.|+++||+|+++++|+++++++++||+++|++++
T Consensus         4 ~~~i~~~l~~~~~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~gv~~g~~V~l~~~~~~~~~~~~la~~~~G~~~v   83 (513)
T PRK07656          4 WMTLPELLARAARRFGDKEAYVFGDQRLTYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVIAALGALKAGAVVV   83 (513)
T ss_pred             cccHHHHHHHHHHHCCCCeEEEeCCCceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHhcCeEEE
Confidence            456889999999999999999998   999 9999999999999999999999999999999999999999999999999


Q ss_pred             eecCCcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCCcceEEe-cCCCCCCCccCCCccccccccCCcCCCCCCcc
Q psy8225         122 FINTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYA-AGTRRKPQAKVLPSTTLLDEELPEVSAKSPTE  200 (479)
Q Consensus       122 ~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (479)
                      |+++..+.+++.++++.+++++++++..............+..+.+. ........  .......|+++.........  
T Consensus        84 ~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--  159 (513)
T PRK07656         84 PLNTRYTADEAAYILARGDAKALFVLGLFLGVDYSATTRLPALEHVVICETEEDDP--HTEKMKTFTDFLAAGDPAER--  159 (513)
T ss_pred             ecCcccCHHHHHHHHhhcCceEEEEchhhHHHHHHHHhccCCccEEEEEcCccccc--CccccccHHHHHhcCCCCCC--
Confidence            99999999999999999999999998876666555544444433322 22111100  00011234444332221111  


Q ss_pred             cccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcCCCCCCeEEEeccchhhhhhHHHHHHHHhcCceEEe
Q psy8225         201 DIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVI  280 (479)
Q Consensus       201 ~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G~~~v~  280 (479)
                       ......+++++++|||||||.||+|.++|.++...+......++++.++++++.+|++|.+|+...++.++..|+++++
T Consensus       160 -~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~  238 (513)
T PRK07656        160 -APEVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWAEYLGLTEGDRYLAANPFFHVFGYKAGVNAPLMRGATILP  238 (513)
T ss_pred             -cCCCCCCceEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhhCCCCCCeEEEccchHHHHHHHHHHHHHHHcCceEEe
Confidence             1345678899999999999999999999999998888877888899999999999999999988888899999999999


Q ss_pred             cCCCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEE--ecCCChhhHHHHHHHhCcceeeeeccccc
Q psy8225         281 RSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFYGATE  358 (479)
Q Consensus       281 ~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~--G~~l~~~~~~~~~~~~~~~~v~~~YG~tE  358 (479)
                      .+.+++..+++.++++++|++.++|++++.|.+........++++|.++  |+++++++++++.+.++...+++.||+||
T Consensus       239 ~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~YG~tE  318 (513)
T PRK07656        239 LPVFDPDEVFRLIETERITVLPGPPTMYNSLLQHPDRSAEDLSSLRLAVTGAASMPVALLERFESELGVDIVLTGYGLSE  318 (513)
T ss_pred             cCcCCHHHHHHHHHHhCCeEEechHHHHHHHHcCCCcCCCCccceeeEEecCCCCCHHHHHHHHHHcCCCceEeEEcccc
Confidence            8888999999999999999999999999999988776666788999887  89999999999999998767999999999


Q ss_pred             cCcccccCC----C--CCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCccccccc
Q psy8225         359 GNANLMNAD----G--KVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNG  432 (479)
Q Consensus       359 ~~~~~~~~~----~--~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~g  432 (479)
                      +++++....    .  .++++|.|++      +++++++|++ +.          +++.|+.|||+++    |+ .++.|
T Consensus       319 ~~~~~~~~~~~~~~~~~~~~vG~~~~------~~~~~i~d~~-~~----------~~~~g~~Gel~v~----~~-~~~~g  376 (513)
T PRK07656        319 ASGVTTFNRLDDDRKTVAGTIGTAIA------GVENKIVNEL-GE----------EVPVGEVGELLVR----GP-NVMKG  376 (513)
T ss_pred             CCCceeecCccccccccCCCccccCC------CcEEEEECCC-CC----------CCCCCCceEEEEE----cc-hhhhh
Confidence            986654322    1  1456666554      7899999854 44          5688999999998    77 89999


Q ss_pred             ccCcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         433 YADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       433 Y~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                      |++++..+...++     ++|||+|||+|++++||++++.||.||++
T Consensus       377 y~~~~~~~~~~~~-----~~~~~~tGDl~~~~~~g~~~~~GR~~d~i  418 (513)
T PRK07656        377 YYDDPEATAAAID-----ADGWLHTGDLGRLDEEGYLYIVDRKKDMF  418 (513)
T ss_pred             hcCCHHHHhhhhc-----cCCceeccceEEEcCCeeEEEEecccceE
Confidence            9998877766553     37899999999999999999999999974

>PRK06839 acyl-CoA synthetase; Validated

Probab=100.00  E-value=4e-53  Score=428.65  Aligned_cols=382  Identities=19%  Similarity=0.267  Sum_probs=318.7

Q ss_pred             hHHHHHHHhhcCCCccccEEE---Eeh-hhHHHHHHHHHHHHH-cCCCCCCEEEEEcCCchHHHHHHHHhhhcCceeeee
Q psy8225          49 ARPLFVRTIREVPMTGAYKYT---VTF-QVEDHSNRIANFFKS-KGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFI  123 (479)
Q Consensus        49 l~~~l~~~~~~~p~~~a~~~~---~Ty-~l~~~~~~la~~L~~-~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~l  123 (479)
                      +.+.|+++++.+|+++|+++.   +|| ||.++++++|+.|++ .|+++|++|+++++|+++++++++||+++|++++|+
T Consensus         4 ~~~~~~~~a~~~p~~~a~~~~~~~~ty~~l~~~~~~la~~L~~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~~~   83 (496)
T PRK06839          4 IAYWIEKRAYLHPDRIAIITEEEEMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFAIAKVECIAVPL   83 (496)
T ss_pred             HHHHHHHHHHHCCCCeEEEECCceEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEEec
Confidence            678999999999999999986   999 999999999999986 699999999999999999999999999999999999


Q ss_pred             cCCcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCCcceEEecCCCCCCCccCCCccccccccCCcCCCCCCccccc
Q psy8225         124 NTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTEDIK  203 (479)
Q Consensus       124 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (479)
                      ++..+.+++..+++.+++++++++......+.+.........++.+.+              +++........     ..
T Consensus        84 ~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~-----~~  144 (496)
T PRK06839         84 NIRLTENELIFQLKDSGTTVLFVEKTFQNMALSMQKVSYVQRVISITS--------------LKEIEDRKIDN-----FV  144 (496)
T ss_pred             CcccCHHHHHHHHHhcCceEEEEcHHHHHHHHHhhhccCcceEEEecc--------------hHhhhccCCCC-----CC
Confidence            999999999999999999999999876655544433222222222211              11111111100     12


Q ss_pred             CCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcCCCCCCeEEEeccchhhhhhHHHHHHHHhcCceEEecCC
Q psy8225         204 KNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSK  283 (479)
Q Consensus       204 ~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~  283 (479)
                      ....+++++++|||||||.||+|.++|.++..........+++..+|++++.+|++|.+|+...++.++..|+++++.+.
T Consensus       145 ~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~  224 (496)
T PRK06839        145 EKNESASFIICYTSGTTGKPKGAVLTQENMFWNALNNTFAIDLTMHDRSIVLLPLFHIGGIGLFAFPTLFAGGVIIVPRK  224 (496)
T ss_pred             CCCCCCcEEEEeCCCCCCCCcEEEEEhHHHHHHHHHHHHHcCCCCCCeEEEeeCCcchhhHHHHHHHHHhcCcEEEEccC
Confidence            33567899999999999999999999999877666666677888999999999999999987777888999999999889


Q ss_pred             CChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEE--ecCCChhhHHHHHHHhCcceeeeeccccccCc
Q psy8225         284 FSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFYGATEGNA  361 (479)
Q Consensus       284 ~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~--G~~l~~~~~~~~~~~~~~~~v~~~YG~tE~~~  361 (479)
                      +++..+++.++++++|++.++|++++.|.+........++++|.++  |+++++++.+.+.+. +. ++.+.||+||++.
T Consensus       225 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~-g~-~~~~~YG~tE~~~  302 (496)
T PRK06839        225 FEPTKALSMIEKHKVTVVMGVPTIHQALINCSKFETTNLQSVRWFYNGGAPCPEELMREFIDR-GF-LFGQGFGMTETSP  302 (496)
T ss_pred             CCHHHHHHHHHhhCCeEEEehHHHHHHHHhCcccccCCCcccceEEECCCCCCHHHHHHHHHh-CC-eeEeeccCCCCCc
Confidence            9999999999999999999999999999988765556688999877  888999999999876 87 8999999999986


Q ss_pred             ccccC-----CCCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCcccccccccCc
Q psy8225         362 NLMNA-----DGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNGYADK  436 (479)
Q Consensus       362 ~~~~~-----~~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~gY~~~  436 (479)
                      .+...     ....+++|+|++      +++++++|+++.           +++.|+.|||+++    |+ .++.||+++
T Consensus       303 ~~~~~~~~~~~~~~~~~G~p~~------~~~~~i~d~~~~-----------~~~~g~~Gel~v~----~~-~~~~gy~~~  360 (496)
T PRK06839        303 TVFMLSEEDARRKVGSIGKPVL------FCDYELIDENKN-----------KVEVGEVGELLIR----GP-NVMKEYWNR  360 (496)
T ss_pred             ceEecccccccccCCCCcccCC------CceEEEECCCcC-----------CCCCCCceEEEEE----CC-CcchhhcCC
Confidence            54322     234567777665      788999986643           4688999999998    77 899999999


Q ss_pred             chhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         437 KASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       437 ~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                      ++.+...++      +|||+|||+|++|++|++++.||.||++
T Consensus       361 ~~~~~~~~~------~g~~~TGDl~~~~~~g~~~~~GR~~d~i  397 (496)
T PRK06839        361 PDATEETIQ------DGWLCTGDLARVDEDGFVYIVGRKKEMI  397 (496)
T ss_pred             hHHHHHHHc------CCCeeecceEEEcCCCcEEEeccccceE
Confidence            888776664      7899999999999999999999999974

>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=1.5e-54  Score=387.54  Aligned_cols=414  Identities=16%  Similarity=0.197  Sum_probs=345.2

Q ss_pred             CcccHHHHHHhhhhcccchhHHHHHHHhhcCCCccccEEE---Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchH
Q psy8225          30 NSLDLKQLISGMQKTLPTYARPLFVRTIREVPMTGAYKYT---VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPE  105 (479)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~p~~~a~~~~---~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e  105 (479)
                      ++.+...-...---+...++.++|.+++.++||++|+++.   +|| +|.++++++|.+|+++|+++||+|.+.+||..+
T Consensus        11 wP~~~a~~YR~~GyW~d~~l~d~L~~~A~~~pdriAv~d~~~~~sY~eLdqr~d~LAa~l~~lGi~~Gd~vlvQLpN~~e   90 (542)
T COG1021          11 WPEEFARRYREKGYWQDRTLTDILTDHAARYPDRIAVIDGERRLSYAELDQRADRLAAGLRRLGIKPGDTVLVQLPNVAE   90 (542)
T ss_pred             CcHHHHHHHHhcCcccCCcHHHHHHHHHhhcCCceEEecCcccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCchHH
Confidence            4544444444322345567899999999999999999998   999 999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhcCceeeeecCCcchHHHHHHHHhccceEEEeChh-----hHHHHHHhhccCCcceEEecCCCCCCCccCC
Q psy8225         106 YVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVAECKAIIYGAE-----LSEALTEVKDSIPGISLYAAGTRRKPQAKVL  180 (479)
Q Consensus       106 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (479)
                      |++++||++++|+.+|.--|.....|+.++.+.++++.+|.+..     ..+...+....++.++.+.+.....      
T Consensus        91 f~~~~FALlrlGv~PVlALpsHr~~Ei~~f~~~~e~~~~i~~~~~~gFd~~~~ar~~~a~~~tlr~v~v~ge~~------  164 (542)
T COG1021          91 FYITFFALLRLGVAPVLALPSHRASELGAFASQIEAALLIVARQHSGFDYRPFARELVAKHPTLRHVIVAGEAE------  164 (542)
T ss_pred             HHHHHHHHHHcCcchhhccchhhHHHHHHHHHhhcchheeechhhcccCcHHHHHHHHhhCCcceEEEEccCCC------
Confidence            99999999999999999889999999999999999999998753     3456677777888877655543221      


Q ss_pred             CccccccccCCcCCCCCCcccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcCCCCCCeEEEeccchh
Q psy8225         181 PSTTLLDEELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYH  260 (479)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~h  260 (479)
                      .....+..+.. .......  ..+.++++++++..+.||||.||-+..+|.....++.......+++..++++|.+|..|
T Consensus       165 ~~~~~~~~~~~-~a~~~~~--a~~~~~~~vA~fqLSGGTTGtPKLIPRtH~DY~Ysv~aSaEiC~~~~~tvyL~~LP~AH  241 (542)
T COG1021         165 HPSVLEAALCH-PAGLFTP--APPADAGEVAFFQLSGGTTGTPKLIPRTHNDYYYSVRASAEICGFDQQTVYLCALPAAH  241 (542)
T ss_pred             CcchhhhhhhC-ccccCCc--CCCCCCCceEEEEecCCCCCCCccccccccceeeeeeehhhhhCcCccceEEEeccccc
Confidence            00111222222 1111111  14567888999999999999999999999999888888888889999999999999999


Q ss_pred             hhhhHH-HHHHHHhcCceEEecCCCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEE--ecCCChhh
Q psy8225         261 TAGGLL-GIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQV  337 (479)
Q Consensus       261 ~~g~~~-~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~--G~~l~~~~  337 (479)
                      -+.+.+ +.++.+..|+++|+.+..++.....+|+++++|+..++|.....|+...+....+++|||++-  |+.+++++
T Consensus       242 NfplssPG~LGv~~agG~VVla~~psp~~~F~lIerh~Vt~tALVPpla~LWlqa~e~~~~~LsSLrllQVGGarl~~~~  321 (542)
T COG1021         242 NFPLSSPGALGVFLAGGTVVLAPDPSPELCFPLIERHGVTVTALVPPLASLWLQAAEWERADLSSLRLLQVGGARLSATL  321 (542)
T ss_pred             CCCCCCcchhheeeeccEEEECCCCCHHHHHHHHHHhccceEEeccHHHHHHHHhhhcccCCchheeEEeecCcccCHHH
Confidence            887643 578889999999999999999999999999999999999999999998888888899999987  77899999


Q ss_pred             HHHHHHHhCcceeeeeccccccCcccccCCCCC----CcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCC
Q psy8225         338 WEPFQKRFGLDRICEFYGATEGNANLMNADGKV----GAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEE  413 (479)
Q Consensus       338 ~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~  413 (479)
                      .+++...+|+ .+.+.+||.|.-...+..++.+    .+-|+|+.+     .=+++|+|.+ |+          +|++||
T Consensus       322 Arrv~~~lgC-~LQQVFGMAEGLvnyTRLDDp~E~i~~TQGrPlsP-----~DEvrvvD~d-g~----------pv~pGE  384 (542)
T COG1021         322 ARRVPAVLGC-QLQQVFGMAEGLVNYTRLDDPPEIIIHTQGRPLSP-----DDEVRVVDAD-GN----------PVAPGE  384 (542)
T ss_pred             HhhchhhhCc-hHHHHhhhhhhhhcccccCCchHheeecCCCcCCC-----cceeEEecCC-CC----------CCCCCC
Confidence            9999999999 9999999999876666554332    456887642     4567777754 44          789999


Q ss_pred             CceEEEEeecCCcccccccccCcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         414 PGILIGMIKESRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       414 ~Gel~v~~~~~~~~~~~~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                      +|+|..+    || -.+.|||+.|+.+.+.|+.     +|+|+|||+.++|+||+|.+.||.||++
T Consensus       385 ~G~LltR----GP-YTirGYyrap~HNa~aF~a-----~GFYrsGD~V~~~~dGyl~V~GR~KDQI  440 (542)
T COG1021         385 VGELLTR----GP-YTIRGYYRAPEHNARAFDA-----DGFYRSGDLVRRDPDGYLVVEGRVKDQI  440 (542)
T ss_pred             cceeeec----CC-eeeeeeccCchhhhhccCc-----CCceecCceeEecCCceEEEEeeehhhh
Confidence            9999988    99 8999999999999888863     9999999999999999999999999974

>PRK09274 peptide synthase; Provisional

Probab=100.00  E-value=1.8e-53  Score=436.35  Aligned_cols=399  Identities=21%  Similarity=0.204  Sum_probs=305.8

Q ss_pred             chhHHHHHHHhhcCCCccccEE-------------EEeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHH
Q psy8225          47 TYARPLFVRTIREVPMTGAYKY-------------TVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLG  112 (479)
Q Consensus        47 ~~l~~~l~~~~~~~p~~~a~~~-------------~~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA  112 (479)
                      .++.++|.+.++++|+++|+++             .+|| ||.++++++|++|.+.|+++||+|+++++|++++++++||
T Consensus         6 ~~~~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~g~~~gd~V~~~~~n~~~~~~~~la   85 (552)
T PRK09274          6 ANIARHLPRAAQERPDQLAVAVPGGRGADGKLAYDELSFAELDARSDAIAHGLNAAGIGRGMRAVLMVTPSLEFFALTFA   85 (552)
T ss_pred             hhHHHHHHHHHHhCCCcceEEeccCCCCccccccCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCcHHHHHHHHH
Confidence            4477899999999999999987             2799 9999999999999999999999999999999999999999


Q ss_pred             hhhcCceeeeecCCcchHHHHHHHHhccceEEEeChh--hHHHHHHhhccCCcc-eEEecCCCCCCCccCCCcccccccc
Q psy8225         113 LSKIGVVAAFINTNQRQHILIHSIKVAECKAIIYGAE--LSEALTEVKDSIPGI-SLYAAGTRRKPQAKVLPSTTLLDEE  189 (479)
Q Consensus       113 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  189 (479)
                      |+++|++++|++|.++.+++.+++++++++++|++.+  ....+....  .... .++..+....      .....++++
T Consensus        86 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~------~~~~~~~~~  157 (552)
T PRK09274         86 LFKAGAVPVLVDPGMGIKNLKQCLAEAQPDAFIGIPKAHLARRLFGWG--KPSVRRLVTVGGRLL------WGGTTLATL  157 (552)
T ss_pred             HHHcCeEEEEcCCCccHHHHHHHHHhcCCCEEEeccHHHHHHHHhccC--ccchhheeccccccc------cCCccHHHh
Confidence            9999999999999999999999999999999999752  222211110  0111 1222211100      011123333


Q ss_pred             CCcCCCCCCcccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcCCCCCCeEEEeccchhhhhhHHHHH
Q psy8225         190 LPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIG  269 (479)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~  269 (479)
                      ..........  .....++++++++|||||||.||+|+++|+++...+......+++..+++.++.+|++|.+++     
T Consensus       158 ~~~~~~~~~~--~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~-----  230 (552)
T PRK09274        158 LRDGAAAPFP--MADLAPDDMAAILFTSGSTGTPKGVVYTHGMFEAQIEALREDYGIEPGEIDLPTFPLFALFGP-----  230 (552)
T ss_pred             cccCccccCC--CCCCCCCCeEEEEECCCCCCCCceEEecHHHHHHHHHHHHHHhCCCCCceeeeccCHHHhhhh-----
Confidence            2111111111  133456889999999999999999999999999888887778889999999999999887653     


Q ss_pred             HHHhcCceEEecC-------CCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEE--ecCCChhhHHH
Q psy8225         270 QCLLGGSTVVIRS-------KFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEP  340 (479)
Q Consensus       270 ~~l~~G~~~v~~~-------~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~--G~~l~~~~~~~  340 (479)
                         ..|.++++.+       .+++..+++.|+++++|+++++|++++.|.+........+++||.++  |+++++++.++
T Consensus       231 ---~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~~~~~~~~~  307 (552)
T PRK09274        231 ---ALGMTSVIPDMDPTRPATVDPAKLFAAIERYGVTNLFGSPALLERLGRYGEANGIKLPSLRRVISAGAPVPIAVIER  307 (552)
T ss_pred             ---hhCCeEEecCcccccccccCHHHHHHHHHHcCCeEEeccHHHHHHHHHHhhhcCCCCchhhEEEecCCcCCHHHHHH
Confidence               3477777654       36789999999999999999999999999887655555788999877  88999999999


Q ss_pred             HHHHhCc-ceeeeeccccccCcccccCC-------------CCCCcccccCccccCCCceeeEEeCCCCCCccccCCCcc
Q psy8225         341 FQKRFGL-DRICEFYGATEGNANLMNAD-------------GKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLC  406 (479)
Q Consensus       341 ~~~~~~~-~~v~~~YG~tE~~~~~~~~~-------------~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~  406 (479)
                      +++.++. .++++.||+||+++++....             ....++|+|+|      +++++++|+.++.....+++  
T Consensus       308 ~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~------~~~~~ivd~~~~~~~~~~~~--  379 (552)
T PRK09274        308 FRAMLPPDAEILTPYGATEALPISSIESREILFATRAATDNGAGICVGRPVD------GVEVRIIAISDAPIPEWDDA--  379 (552)
T ss_pred             HHHHcCCCceEEccccccccceeEeecchhhhccccccccCCCCcccCccCC------CceEEEEecccccccccccc--
Confidence            9999952 38999999999986543211             01124566554      89999998653321111122  


Q ss_pred             ccccCCCCceEEEEeecCCcccccccccCcchhHHHHHhhhccCCCc--EEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         407 IPCKAEEPGILIGMIKESRAESHFNGYADKKASEKKILRNVYSHGDA--AFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       407 ~~~~~~~~Gel~v~~~~~~~~~~~~gY~~~~~~~~~~~~~~~~~~~g--~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                      .+++.|+.|||+++    |+ +++.|||++++.+...+.   .+.+|  ||+|||+|++|+||+|+++||.||++
T Consensus       380 ~~~~~g~~Gel~v~----g~-~~~~GY~~~~~~t~~~~~---~~~~g~~w~~TGDlg~~d~dG~l~~~GR~~d~i  446 (552)
T PRK09274        380 LRLATGEIGEIVVA----GP-MVTRSYYNRPEATRLAKI---PDGQGDVWHRMGDLGYLDAQGRLWFCGRKAHRV  446 (552)
T ss_pred             ccCCCCCeeEEEEe----cC-cccccccCChHHhhhhhc---ccCCCCcEEEcCCEEEEccCCcEEEEeccCCeE
Confidence            26789999999998    78 899999999877665431   12245  99999999999999999999999975

>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase

Probab=100.00  E-value=8.9e-53  Score=428.55  Aligned_cols=398  Identities=16%  Similarity=0.192  Sum_probs=319.3

Q ss_pred             ccchhHHHHHHHhhcCCCccccEEE---Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCcee
Q psy8225          45 LPTYARPLFVRTIREVPMTGAYKYT---VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVA  120 (479)
Q Consensus        45 ~~~~l~~~l~~~~~~~p~~~a~~~~---~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~  120 (479)
                      ...++.++|+++++.+|+++|+++.   +|| ||.++++++|..|.+.|+++|++|+++++|+++++++++||+++|+++
T Consensus        21 ~~~~l~~~~~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~  100 (527)
T TIGR02275        21 QDKPLTDILRDQAARYPDAIAIICGNRQWSYRELDQRADNLAAGLTKLGIGQGDTAVVQLPNIAEFYIVFFALLKLGIAP  100 (527)
T ss_pred             cCCcHHHHHHHHHHHCCCceEEEeCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHcCeEE
Confidence            3456899999999999999999987   999 999999999999999999999999999999999999999999999999


Q ss_pred             eeecCCcchHHHHHHHHhccceEEEeChhhH-----HHHHHhhccCCcceEEecCCCCCCCccCCCccccccccCCcCCC
Q psy8225         121 AFINTNQRQHILIHSIKVAECKAIIYGAELS-----EALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSA  195 (479)
Q Consensus       121 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (479)
                      +++++..+.+++.++++.+++++++++....     ..........+.+..+........       .......+.....
T Consensus       101 v~~~~~~~~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~  173 (527)
T TIGR02275       101 VLALFSHRKSELTAYAQQIEPALYIIDRAHSLFDYDAFARQLQSKLPTLRNIIVAGQTRV-------EAELFLWLESPAE  173 (527)
T ss_pred             eccccccCHHHHHHHHHhcCCcEEEEcCcccccchHHHHHHHHhhCCcceEEEEecCCCC-------cchhhHHhhCcCc
Confidence            9999999999999999999999999976532     112222222333332222111000       0001111111110


Q ss_pred             CCCcccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcCCCCCCeEEEeccchhhhhhHH-HHHHHHhc
Q psy8225         196 KSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLL-GIGQCLLG  274 (479)
Q Consensus       196 ~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~-~~~~~l~~  274 (479)
                      ..   ......++++++++|||||||.||+|+++|.++...+......+.+..+|++++.+|++|.+++.. .++.++..
T Consensus       174 ~~---~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~P~~h~~~~~~~~~~~~l~~  250 (527)
T TIGR02275       174 PV---KFPPTKSDEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICWLTQQTRYLCALPAAHNYPLSSPGALGVFYA  250 (527)
T ss_pred             cc---cCCCCCCCccEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhcCCCcCCEEEECCChHhhhhhhHHHHHHHHhc
Confidence            10   013446789999999999999999999999999988887777788899999999999999998754 47788999


Q ss_pred             CceEEecCCCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEE--ecCCChhhHHHHHHHhCcceeee
Q psy8225         275 GSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICE  352 (479)
Q Consensus       275 G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~--G~~l~~~~~~~~~~~~~~~~v~~  352 (479)
                      |+++++.+.+++..+++.++++++|++..+|++++.|.+........++++|.++  |+++++++.+++.+.++. ++++
T Consensus       251 G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~g~-~~~~  329 (527)
T TIGR02275       251 GGCVVLAPDPSPTDCFPLIERHKVTVTALVPPAVALWMQAASKSRYDLSSLKLLQVGGAKFSEAAARRVPAVFGC-QLQQ  329 (527)
T ss_pred             CCeEEECCCCCHHHHHHHHHHhCCeEEEecHHHHHHHHhCccccCCCccceEEEEEcCCCCCHHHHHHHHHHhCC-eEEe
Confidence            9999998888999999999999999999999999999887766556678999877  889999999999999998 9999


Q ss_pred             eccccccCcccccCC----CCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCccc
Q psy8225         353 FYGATEGNANLMNAD----GKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAES  428 (479)
Q Consensus       353 ~YG~tE~~~~~~~~~----~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~  428 (479)
                      .||+||++......+    ...+++|+|++.     +..++++|++ ++          ++++|+.|||+++    |+ .
T Consensus       330 ~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~-----~~~v~i~d~~-g~----------~~~~g~~Gei~v~----g~-~  388 (527)
T TIGR02275       330 VFGMAEGLVNYTRLDDPAEIIFTTQGRPMSP-----DDEVRVVDDH-GN----------PVAPGETGMLLTR----GP-Y  388 (527)
T ss_pred             eeccCccCccccCCCCccccccccCCCCCCC-----CceEEEECCC-CC----------CCCCCCceEEEec----CC-c
Confidence            999999764433221    233566775531     4677778754 44          4688999999998    77 8


Q ss_pred             ccccccCcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         429 HFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       429 ~~~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                      ++.||+++++.+.+.+.     .+|||+|||+|++|+||++++.||.||++
T Consensus       389 ~~~gY~~~~~~~~~~~~-----~dg~~~TGDl~~~~~~g~l~~~gR~~d~i  434 (527)
T TIGR02275       389 TFRGYYKAPEHNAAAFD-----AEGFYYTGDLVRLTPEGYIVVVGRAKDQI  434 (527)
T ss_pred             cchhhcCChhHhHhhcC-----cCCCEEcCceEEEcCCccEEEEeccccee
Confidence            99999999887776654     37899999999999999999999999975

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB.

>PRK07638 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.5e-53  Score=428.68  Aligned_cols=377  Identities=17%  Similarity=0.196  Sum_probs=308.9

Q ss_pred             hhHHHHHHHhhcCCCccccEEE---Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCceeeee
Q psy8225          48 YARPLFVRTIREVPMTGAYKYT---VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFI  123 (479)
Q Consensus        48 ~l~~~l~~~~~~~p~~~a~~~~---~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~l  123 (479)
                      ++.++|.++++++|+++|+.+.   +|| ||.++++++|+.|.+.|. +|++|+|+++|++++++++|||+++|++++|+
T Consensus         2 ~~~~~~~~~a~~~p~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~~~-~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~l   80 (487)
T PRK07638          2 GITKEYKKHASLQPNKIAIKENDRVLTYKDWFESVCKVANWLNEKES-KNKTIAILLENRIEFLQLFAGAAMAGWTCVPL   80 (487)
T ss_pred             ChHHHHHHHHHhCCCCeEEecCCcEeeHHHHHHHHHHHHHHHHHhCC-CCCEEEEEcCCCHHHHHHHHHHHHcCeEEEec
Confidence            5789999999999999999887   999 999999999999999984 79999999999999999999999999999999


Q ss_pred             cCCcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCCcceEEecCCCCCCCccCCCccccccccCCcCCCCCCccccc
Q psy8225         124 NTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTEDIK  203 (479)
Q Consensus       124 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (479)
                      ++.++.+++.++++.+++++++++......+...     ...++....              +.+..........   ..
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~-----~~~~~~~~~--------------~~~~~~~~~~~~~---~~  138 (487)
T PRK07638         81 DIKWKQDELKERLAISNADMIVTERYKLNDLPDE-----EGRVIEIDE--------------WKRMIEKYLPTYA---PI  138 (487)
T ss_pred             CccCCHHHHHHHHHhCCCCEEEEecccccchhhc-----cceEEEehh--------------hhhhhhhcccccc---cc
Confidence            9999999999999999999999987544333211     112221111              1111111111000   01


Q ss_pred             CCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcCCCCCCeEEEeccchhhhhhHHHHHHHHhcCceEEecCC
Q psy8225         204 KNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSK  283 (479)
Q Consensus       204 ~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~  283 (479)
                      ....+++++++|||||||.||+|+++|++++..+......+++..+|+++...|++|..++ ..++.++..|+++++.+.
T Consensus       139 ~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~l-~~~~~~l~~g~~~~~~~~  217 (487)
T PRK07638        139 ENVQNAPFYMGFTSGSTGKPKAFLRAQQSWLHSFDCNVHDFHMKREDSVLIAGTLVHSLFL-YGAISTLYVGQTVHLMRK  217 (487)
T ss_pred             ccCCCCcEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCcCCCCEEEEeecchHHHHH-HHHHHHHccCcEEEEcCC
Confidence            2234668999999999999999999999998888877777888999999999999998775 667789999999999999


Q ss_pred             CChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEE-ecCCChhhHHHHHHHhCcceeeeeccccccCcc
Q psy8225         284 FSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI-GNGLRPQVWEPFQKRFGLDRICEFYGATEGNAN  362 (479)
Q Consensus       284 ~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~-G~~l~~~~~~~~~~~~~~~~v~~~YG~tE~~~~  362 (479)
                      +++..+++.++++++|++.++|++++.|.+...   ...+.++.+. |+++++++.+++.+.++..++++.||+||++..
T Consensus       218 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~---~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~  294 (487)
T PRK07638        218 FIPNQVLDKLETENISVMYTVPTMLESLYKENR---VIENKMKIISSGAKWEAEAKEKIKNIFPYAKLYEFYGASELSFV  294 (487)
T ss_pred             CCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCcC---cCCceeEEEEcCCCCCHHHHHHHHHHcCCCeEEEEecCCccCce
Confidence            999999999999999999999999999987732   2345666666 888999999999999965589999999999866


Q ss_pred             cccC----CCCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCcccccccccCcch
Q psy8225         363 LMNA----DGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNGYADKKA  438 (479)
Q Consensus       363 ~~~~----~~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~gY~~~~~  438 (479)
                      +...    ...++++|+|++      +++++++|++ |.          ++++|+.|||+++    |+ .++.||+++++
T Consensus       295 ~~~~~~~~~~~~~~~G~~~~------~~~~~i~d~~-g~----------~~~~g~~Gel~v~----~~-~~~~gy~~~~~  352 (487)
T PRK07638        295 TALVDEESERRPNSVGRPFH------NVQVRICNEA-GE----------EVQKGEIGTVYVK----SP-QFFMGYIIGGV  352 (487)
T ss_pred             EEecccccCCCCCCCCcccC------CcEEEEECCC-CC----------CCCCCCCeEEEEe----cc-cceeeecCCHH
Confidence            5432    234556777655      7899999854 44          5689999999998    77 89999999987


Q ss_pred             hHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         439 SEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       439 ~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                      .+.+.+.      +|||+|||+|++|+||++++.||+||++
T Consensus       353 ~~~~~~~------~g~~~TGDl~~~d~~g~l~i~GR~~d~i  387 (487)
T PRK07638        353 LARELNA------DGWMTVRDVGYEDEEGFIYIVGREKNMI  387 (487)
T ss_pred             HHhhhcc------CCcEecCccEeEcCCCeEEEEecCCCeE
Confidence            7665432      7899999999999999999999999985

>PLN02330 4-coumarate--CoA ligase-like 1

Probab=100.00  E-value=2.2e-53  Score=434.73  Aligned_cols=396  Identities=21%  Similarity=0.280  Sum_probs=315.1

Q ss_pred             chhHHHHHHHhhcCCCccccEEE-----Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCcee
Q psy8225          47 TYARPLFVRTIREVPMTGAYKYT-----VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVA  120 (479)
Q Consensus        47 ~~l~~~l~~~~~~~p~~~a~~~~-----~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~  120 (479)
                      .++.+++.+.+..+|+++|+++.     +|| ||.+++.++|..|.+.|+++||+|+++++|+++++++++||+++|+++
T Consensus        28 ~~~~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~  107 (546)
T PLN02330         28 LTLPDFVLQDAELYADKVAFVEAVTGKAVTYGEVVRDTRRFAKALRSLGLRKGQVVVVVLPNVAEYGIVALGIMAAGGVF  107 (546)
T ss_pred             CcHHHHHhhhhhcCCCccEEEecCCCCcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHhCcEe
Confidence            56899999999999999999863     999 999999999999999999999999999999999999999999999999


Q ss_pred             eeecCCcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCCcceEEecCCCCCCCccCCCccccccccCCcCCCCCCcc
Q psy8225         121 AFINTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTE  200 (479)
Q Consensus       121 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (479)
                      +|+++..+.+++.++++.+++++++++......+...     ...++.+.....      .....|.+++..........
T Consensus       108 vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~-----~~~~i~~~~~~~------~~~~~~~~~~~~~~~~~~~~  176 (546)
T PLN02330        108 SGANPTALESEIKKQAEAAGAKLIVTNDTNYGKVKGL-----GLPVIVLGEEKI------EGAVNWKELLEAADRAGDTS  176 (546)
T ss_pred             ccCCccCCHHHHHHHHHhcCCeEEEEccchhhhHhhc-----CCcEEEecCCCC------CCcccHHHHHhhccccCccc
Confidence            9999999999999999999999999998766655432     122333332111      11223444443222111110


Q ss_pred             cccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcC--CCCCCeEEEeccchhhhhhHHHHHHHHhcCceE
Q psy8225         201 DIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTG--LTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTV  278 (479)
Q Consensus       201 ~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~--~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G~~~  278 (479)
                      .......++.++++|||||||.||||+++|+++...+.......+  ....++.+..+|++|.+|+...++.++..|+++
T Consensus       177 ~~~~~~~~~~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~g~~~  256 (546)
T PLN02330        177 DNEEILQTDLCALPFSSGTTGISKGVMLTHRNLVANLCSSLFSVGPEMIGQVVTLGLIPFFHIYGITGICCATLRNKGKV  256 (546)
T ss_pred             ccccCCcccEEEEEeCCCCcCCCcEEEEehHHHHHHHHHHhhccCccccCceEEEEecChHHHHHHHHHHHHHhhcCCEE
Confidence            112334678999999999999999999999999876543222221  223467899999999999877777889999999


Q ss_pred             EecCCCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCC--ceeEEE--ecCCChhhHHHHHHHhCcceeeeec
Q psy8225         279 VIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQH--SVKMMI--GNGLRPQVWEPFQKRFGLDRICEFY  354 (479)
Q Consensus       279 v~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~--~lr~~~--G~~l~~~~~~~~~~~~~~~~v~~~Y  354 (479)
                      ++.+.+++..+++.++++++|.+.++|+++..+..........+.  ++|.++  |+++++++++++.+.|+..++++.|
T Consensus       257 ~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~i~~~g~~l~~~~~~~~~~~~~~~~~~~~Y  336 (546)
T PLN02330        257 VVMSRFELRTFLNALITQEVSFAPIVPPIILNLVKNPIVEEFDLSKLKLQAIMTAAAPLAPELLTAFEAKFPGVQVQEAY  336 (546)
T ss_pred             EEecccCHHHHHHHHHHcCCeeeecCCHHHHHHHhCccccccccchheeeeEEEcCCcCCHHHHHHHHHHcCCCeEEecc
Confidence            999999999999999999999999999999999886554433443  466665  8999999999999999433999999


Q ss_pred             cccccCcccccCC--------CCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCc
Q psy8225         355 GATEGNANLMNAD--------GKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRA  426 (479)
Q Consensus       355 G~tE~~~~~~~~~--------~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~  426 (479)
                      |+||++.+.....        ..++++|+|+|      +++++++|+++++          +++.|+.|||+++    |+
T Consensus       337 G~tE~~~~~~~~~~~~~~~~~~~~~~vG~~~~------~~~v~i~d~~~~~----------~~p~g~~Gel~v~----g~  396 (546)
T PLN02330        337 GLTEHSCITLTHGDPEKGHGIAKKNSVGFILP------NLEVKFIDPDTGR----------SLPKNTPGELCVR----SQ  396 (546)
T ss_pred             cccccccceecCCCccccccccccCccccccC------CcEEEEEeCCCCc----------cCCCCCceEEEEe----cc
Confidence            9999876543221        22345666554      8999999977666          5688999999998    77


Q ss_pred             ccccccccCcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         427 ESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       427 ~~~~~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                       .++.||++++..+.+.++     .+|||+|||+|++++||++++.||.||++
T Consensus       397 -~~~~gy~~~~~~~~~~~~-----~~g~~~TGD~~~~~~dG~l~~~GR~~d~i  443 (546)
T PLN02330        397 -CVMQGYYNNKEETDRTID-----EDGWLHTGDIGYIDDDGDIFIVDRIKELI  443 (546)
T ss_pred             -hhhhhhccCccchhhhcc-----CCCceecccEEEEeCCCcEEEEechHHhh
Confidence             899999999877766553     37999999999999999999999999874

>PRK08316 acyl-CoA synthetase; Validated

Probab=100.00  E-value=4.3e-53  Score=431.27  Aligned_cols=404  Identities=21%  Similarity=0.222  Sum_probs=329.2

Q ss_pred             hcccchhHHHHHHHhhcCCCccccEEE---Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCc
Q psy8225          43 KTLPTYARPLFVRTIREVPMTGAYKYT---VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGV  118 (479)
Q Consensus        43 ~~~~~~l~~~l~~~~~~~p~~~a~~~~---~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~  118 (479)
                      .....++.++|.+.++.+|+++|+++.   +|| ||.+++.++|..|.+.|+++||+|+++++|+++++++++||+++|+
T Consensus         7 ~~~~~~l~~~l~~~a~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~gi~~~~~V~l~~~~~~~~~~~~~a~~~~G~   86 (523)
T PRK08316          7 RARRQTIGDILRRSARRYPDKTALVFGDRSWTYAELDAAVNRVAAALLDLGLKKGDRVAALGHNSDAYALLWLACARAGA   86 (523)
T ss_pred             cccCCCHHHHHHHHHHHCCCCeEEEECCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcCc
Confidence            344577999999999999999999987   999 9999999999999999999999999999999999999999999999


Q ss_pred             eeeeecCCcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCCcceEEecCCCCCCCccCCCccccccccCCcCCCCCC
Q psy8225         119 VAAFINTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSP  198 (479)
Q Consensus       119 ~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (479)
                      +++|+++..+.+++.++++.+++++++++.+....+.+..+......+........  .........+++..........
T Consensus        87 ~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  164 (523)
T PRK08316         87 VHVPVNFMLTGEELAYILDHSGARAFLVDPALAPTAEAALALLPVDTLILSLVLGG--REAPGGWLDFADWAEAGSVAEP  164 (523)
T ss_pred             EEEecccccCHHHHHHHHHhCCCCEEEEccchHHHHHHHhhhcCccceeeeecccc--cccccchhhHHHHHhcCCCccC
Confidence            99999999999999999999999999999877666655443332111111110000  0001122223332222111111


Q ss_pred             cccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcCCCCCCeEEEeccchhhhhhHHHHHHHHhcCceE
Q psy8225         199 TEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTV  278 (479)
Q Consensus       199 ~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G~~~  278 (479)
                         ......+++++++|||||||.||+|.++|.++..........++++.++++++.+|++|..|+...+..++..|+++
T Consensus       165 ---~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~~~~G~~~  241 (523)
T PRK08316        165 ---DVELADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSCIVAGDMSADDIPLHALPLYHCAQLDVFLGPYLYVGATN  241 (523)
T ss_pred             ---ccCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHHhCCCCCceEEEccCCchhhhHHHHHHHHHhcCceE
Confidence               13456788999999999999999999999999988777777788999999999999999999876677788999999


Q ss_pred             EecCCCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEE--ecCCChhhHHHHHHHhCcceeeeeccc
Q psy8225         279 VIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFYGA  356 (479)
Q Consensus       279 v~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~--G~~l~~~~~~~~~~~~~~~~v~~~YG~  356 (479)
                      ++.+..++..+++.++++++|++.++|+++..|.+........++++|.+.  |+.++.++.+.+++.++...+++.||+
T Consensus       242 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~YG~  321 (523)
T PRK08316        242 VILDAPDPELILRTIEAERITSFFAPPTVWISLLRHPDFDTRDLSSLRKGYYGASIMPVEVLKELRERLPGLRFYNCYGQ  321 (523)
T ss_pred             EEecCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHcCcccccCCcccceEEEEcCCcCCHHHHHHHHHHcCCCceeeeecc
Confidence            999888999999999999999999999999999988766666778899876  788999999999998854489999999


Q ss_pred             cccCcccccC-----CCCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCcccccc
Q psy8225         357 TEGNANLMNA-----DGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFN  431 (479)
Q Consensus       357 tE~~~~~~~~-----~~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~  431 (479)
                      ||++.+....     ....+++|+|++      +++++++|++ +.          +++.|+.|||+++    |+ +++.
T Consensus       322 tE~~~~~~~~~~~~~~~~~~~~G~~~~------~~~~~i~~~~-~~----------~~~~g~~Gei~v~----~~-~~~~  379 (523)
T PRK08316        322 TEIAPLATVLGPEEHLRRPGSAGRPVL------NVETRVVDDD-GN----------DVAPGEVGEIVHR----SP-QLML  379 (523)
T ss_pred             cccCccccccCccccccccCCcccCCC------CcEEEEEcCC-CC----------CCCCCCcceEEEE----CC-chhh
Confidence            9998765432     133466777665      7888888854 44          5678999999998    77 8999


Q ss_pred             cccCcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         432 GYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       432 gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                      ||+++++.+++.+.      +|||+|||+|++|+||+++++||.||++
T Consensus       380 ~y~~~~~~~~~~~~------~~~~~TGDl~~~~~~g~l~i~gR~~~~i  421 (523)
T PRK08316        380 GYWDDPEKTAEAFR------GGWFHSGDLGVMDEEGYITVVDRKKDMI  421 (523)
T ss_pred             hhcCCHHHHHHHhh------CCCeeccceEEEcCCceEEEecccccEE
Confidence            99999887776654      7899999999999999999999999974

>PRK05852 acyl-CoA synthetase; Validated

Probab=100.00  E-value=4.6e-53  Score=431.37  Aligned_cols=403  Identities=18%  Similarity=0.232  Sum_probs=313.6

Q ss_pred             hcccchhHHHHHHHhhcCCCccccEEE-----Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhc
Q psy8225          43 KTLPTYARPLFVRTIREVPMTGAYKYT-----VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKI  116 (479)
Q Consensus        43 ~~~~~~l~~~l~~~~~~~p~~~a~~~~-----~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~  116 (479)
                      ...-.++.++|+++++++|+++|+++.     +|| ||.++++++|+.|.+.|+++||+|+++++|++++++++|||+++
T Consensus        12 ~~~~~~l~~~l~~~a~~~p~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~   91 (534)
T PRK05852         12 SDFGPRIADLVEVAATRLPEAPALVVTADRIAISYRDLARLVDDLAGQLTRSGLLPGDRVALRMGSNAEFVVALLAASRA   91 (534)
T ss_pred             hhhcccHHHHHHHHHHhCCCCcEEEecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcHHHHHHHHHHHHc
Confidence            334466999999999999999999874     999 99999999999999999999999999999999999999999999


Q ss_pred             CceeeeecCCcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCCcceEEecCCCCCCCccCCCccccccccCCcCCCC
Q psy8225         117 GVVAAFINTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAK  196 (479)
Q Consensus       117 G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (479)
                      |++++|+++.++.+++.++++.++++++|++................. .+........    .......  ........
T Consensus        92 G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~--~~~~~~~~  164 (534)
T PRK05852         92 DLVVVPLDPALPIAEQRVRSQAAGARVVLIDADGPHDRAEPTTRWWPL-TVNVGGDSGP----SGGTLSV--HLDAATEP  164 (534)
T ss_pred             CcEEeecCCCCCcHHHHHHHHhCCCCEEEEcCCCcchhccccccccce-eeeecccccc----ccccccc--ccccccCC
Confidence            999999999999999999999999999999764332111100000011 1111110000    0000000  00000000


Q ss_pred             CCcccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcCCCCCCeEEEeccchhhhhhHHHHHHHHhcCc
Q psy8225         197 SPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGS  276 (479)
Q Consensus       197 ~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G~  276 (479)
                      ...........++.++++|||||||.||+|+++|+++...+......++++.+|++++.+|++|.+|++..++.++..|+
T Consensus       165 ~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~  244 (534)
T PRK05852        165 TPATSTPEGLRPDDAMIMFTGGTTGLPKMVPWTHANIASSVRAIITGYRLSPRDATVAVMPLYHGHGLIAALLATLASGG  244 (534)
T ss_pred             CccccccCCCCCCceEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHhCCCCcceEEEecCcchhHHHHHHHHHHHhcCC
Confidence            00000012234678999999999999999999999999888888888889999999999999999999888889999999


Q ss_pred             eEEecC--CCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCC--CCCCCceeEEE--ecCCChhhHHHHHHHhCccee
Q psy8225         277 TVVIRS--KFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKP--EDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRI  350 (479)
Q Consensus       277 ~~v~~~--~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~--~~~l~~lr~~~--G~~l~~~~~~~~~~~~~~~~v  350 (479)
                      ++++..  .+++..+++.++++++|.+.++|+++..|.+.....  ....+++|.+.  |+++++++++++.+.++. ++
T Consensus       245 ~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~~~~~~~~~~~~~~~~-~v  323 (534)
T PRK05852        245 AVLLPARGRFSAHTFWDDIKAVGATWYTAVPTIHQILLERAATEPSGRKPAALRFIRSCSAPLTAETAQALQTEFAA-PV  323 (534)
T ss_pred             eEEeCCCcCcCHHHHHHHHHHcCCcEEEcChHHHHHHHhhcccccccccCCCeeEEEECCCCCCHHHHHHHHHHhCC-Ch
Confidence            988854  478899999999999999999999999998765432  23467899887  789999999999999998 89


Q ss_pred             eeeccccccCcccccCCC--------CCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEee
Q psy8225         351 CEFYGATEGNANLMNADG--------KVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIK  422 (479)
Q Consensus       351 ~~~YG~tE~~~~~~~~~~--------~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~  422 (479)
                      ++.||+||++..++....        ...+.|.+   ++ .++++++++|++ ++          ++++|+.|||+++  
T Consensus       324 ~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~g~~---g~-~~g~~~~i~d~~-g~----------~~~~g~~Gel~v~--  386 (534)
T PRK05852        324 VCAFGMTEATHQVTTTQIEGIGQTENPVVSTGLV---GR-STGAQIRIVGSD-GL----------PLPAGAVGEVWLR--  386 (534)
T ss_pred             hhccCccccchhhhcCCccccccccCcccccccC---CC-CCCCeEEEECCC-CC----------CCCCCCceEEEEe--
Confidence            999999999866543211        11233332   11 237889989865 44          5688999999998  


Q ss_pred             cCCcccccccccCcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         423 ESRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       423 ~~~~~~~~~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                        |+ .++.||+++++.+.+.+.      +|||+|||+|++|+||++++.||.||++
T Consensus       387 --g~-~v~~gY~~~~~~t~~~~~------~g~~~TGD~~~~d~dG~l~~~gR~~d~i  434 (534)
T PRK05852        387 --GT-TVVRGYLGDPTITAANFT------DGWLRTGDLGSLSAAGDLSIRGRIKELI  434 (534)
T ss_pred             --cC-cccchhcCCcccchhhhc------CCCcccCceEEEeCCCcEEEEecchhhE
Confidence              77 899999999887776553      7899999999999999999999999975

>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated

Probab=100.00  E-value=1.1e-52  Score=427.22  Aligned_cols=402  Identities=24%  Similarity=0.364  Sum_probs=320.8

Q ss_pred             chhHHHHHHHhhcCCCccccEEE--------Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcC
Q psy8225          47 TYARPLFVRTIREVPMTGAYKYT--------VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIG  117 (479)
Q Consensus        47 ~~l~~~l~~~~~~~p~~~a~~~~--------~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G  117 (479)
                      .++.++|++.++++|+++|+++.        +|| ||.++++++|..|.++|+++||+|+++++|+.+++++++||+++|
T Consensus         7 ~~l~~~~~~~a~~~p~~~a~~~~~~~~~~~~~ty~~l~~~v~~la~~L~~~g~~~~~~v~i~~~n~~~~~~~~la~~~~G   86 (517)
T PRK08008          7 QHLRQMWDDLADVYGHKTALIFESSGGVVRRYSYLELNEEINRTANLFYSLGIRKGDKVALHLDNCPEFIFCWFGLAKIG   86 (517)
T ss_pred             ccHHHHHHHHHHHCCCceEEEcccCCCccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcC
Confidence            56899999999999999999863        999 999999999999999999999999999999999999999999999


Q ss_pred             ceeeeecCCcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCC-cce-EEecCCCCCCCccCCCccccccccCCcCCC
Q psy8225         118 VVAAFINTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIP-GIS-LYAAGTRRKPQAKVLPSTTLLDEELPEVSA  195 (479)
Q Consensus       118 ~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (479)
                      ++++++++..+.+++.+++++++++++|++.+..+.+.++.+... ..+ ++.......    .......+++.......
T Consensus        87 ~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~  162 (517)
T PRK08008         87 AIMVPINARLLREESAWILQNSQASLLVTSAQFYPMYRQIQQEDATPLRHICLTRVALP----ADDGVSSFTQLKAQQPA  162 (517)
T ss_pred             eEEEEcCcccCHHHHHHHHHhcCceEEEEecchhHHHHHHHhhccccCcEEEEecCCCc----ccccccCHHHHhccCCc
Confidence            999999999999999999999999999999887766666543321 222 222222110    01122233333222111


Q ss_pred             CCCcccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcCCCCCCeEEEeccchhhhhhHHHHHHHHhcC
Q psy8225         196 KSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGG  275 (479)
Q Consensus       196 ~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G  275 (479)
                      ....  ......+++++++|||||||.||+|+++|.++............+..++++++.+|++|..+....++.++..|
T Consensus       163 ~~~~--~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G  240 (517)
T PRK08008        163 TLCY--APPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQCALRDDDVYLTVMPAFHIDCQCTAAMAAFSAG  240 (517)
T ss_pred             cccc--cCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHhhhcCCCCCCeEEEecCcHHHHHHHHHHHHHHhcC
Confidence            1111  12345688999999999999999999999999865443333445788999999999999988878888899999


Q ss_pred             ceEEecCCCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEE-ecCCChhhHHHHHHHhCcceeeeec
Q psy8225         276 STVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI-GNGLRPQVWEPFQKRFGLDRICEFY  354 (479)
Q Consensus       276 ~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~-G~~l~~~~~~~~~~~~~~~~v~~~Y  354 (479)
                      +++++.+.+++..+++.++++++|++.++|++++.+............+++.+. |+++++++..+|.+.++. ++++.|
T Consensus       241 ~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Y  319 (517)
T PRK08008        241 ATFVLLEKYSARAFWGQVCKYRATITECIPMMIRTLMVQPPSANDRQHCLREVMFYLNLSDQEKDAFEERFGV-RLLTSY  319 (517)
T ss_pred             cEEEEccccCHHHHHHHHHHcCCcEEechHHHHHHHHhCCCccccccccceeeEEecCCCHHHHHHHHHHhCC-eEEeec
Confidence            999999999999999999999999999999999998876554444456777766 788999999999999998 999999


Q ss_pred             cccccCcccccC----CCCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCccccc
Q psy8225         355 GATEGNANLMNA----DGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHF  430 (479)
Q Consensus       355 G~tE~~~~~~~~----~~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~~  430 (479)
                      |+||++..+...    ....+++|.|++      +++++++|++ ++          +++.|+.|||++++. .++ +++
T Consensus       320 G~tE~~~~~~~~~~~~~~~~~~~G~~~~------g~~~~i~d~~-~~----------~~~~g~~Gel~v~g~-~~~-~~~  380 (517)
T PRK08008        320 GMTETIVGIIGDRPGDKRRWPSIGRPGF------CYEAEIRDDH-NR----------PLPAGEIGEICIKGV-PGK-TIF  380 (517)
T ss_pred             cccccccccccCCccccccCCccccCCC------CcEEEEECCC-CC----------CCCCCCcceEEEeCC-CCc-chh
Confidence            999997654322    123456666554      7889988854 44          568899999999831 124 799


Q ss_pred             ccccCcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         431 NGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       431 ~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                      .||+++++.+++.++     .+|||+|||+|++|+||++++.||.||++
T Consensus       381 ~gy~~~~~~~~~~~~-----~~g~~~TGDl~~~~~~g~~~~~GR~~d~i  424 (517)
T PRK08008        381 KEYYLDPKATAKVLE-----ADGWLHTGDTGYVDEEGFFYFVDRRCNMI  424 (517)
T ss_pred             hhHhCChHHHhhccc-----CCCCeeccceEEECCCCcEEEeecccceE
Confidence            999999888876654     37899999999999999999999999975

>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase

Probab=100.00  E-value=9.7e-53  Score=429.36  Aligned_cols=394  Identities=20%  Similarity=0.241  Sum_probs=317.6

Q ss_pred             chhHHHHHHHhhcCCCccccEE--------E-Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhc
Q psy8225          47 TYARPLFVRTIREVPMTGAYKY--------T-VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKI  116 (479)
Q Consensus        47 ~~l~~~l~~~~~~~p~~~a~~~--------~-~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~  116 (479)
                      .++.+++.++++.+|+++|+++        . +|| ||.++++++|.+|++.|+++|++|+++++|+++++++++||+++
T Consensus        22 ~~~~~~~~~~~~~~p~~~a~~~~~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~~  101 (538)
T TIGR03208        22 RTINDHFDAAVANCPDKPALTAYRDGHGAVRRFSYRELDCRVDRIAVGLARLGVGRGDVVSFQLPNRWEFTALYLACARI  101 (538)
T ss_pred             CcHHHHHHHHHHHCCCceEEEeecccCCCcceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhc
Confidence            4688999999999999999985        1 999 99999999999999999999999999999999999999999999


Q ss_pred             CceeeeecCCcchHHHHHHHHhccceEEEeChhhH-----HHHHHhhccCCcce-EEecCCCCCCCccCCCccccccccC
Q psy8225         117 GVVAAFINTNQRQHILIHSIKVAECKAIIYGAELS-----EALTEVKDSIPGIS-LYAAGTRRKPQAKVLPSTTLLDEEL  190 (479)
Q Consensus       117 G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  190 (479)
                      |++++|++|..+.+++.++++.++++++++++...     ..........+... ++..+...         ...++..+
T Consensus       102 G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~  172 (538)
T TIGR03208       102 GAVLNPLMPIFRERELSFMLNHADSKVFVVPSVFRGFDHAAMARELQSKLPALRQVVVIDGDG---------DDSFDRVL  172 (538)
T ss_pred             CEEEeccCcccCHHHHHHHHHhcCCeEEEEccccccccHHHHHHHHhccCCcceEEEEecCCC---------CcCHHHHh
Confidence            99999999999999999999999999999976532     22222323333222 33322111         11122221


Q ss_pred             CcCCCC-CCc----ccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcCCCCCCeEEEeccchhhhhhH
Q psy8225         191 PEVSAK-SPT----EDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGL  265 (479)
Q Consensus       191 ~~~~~~-~~~----~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~  265 (479)
                      ...... ...    ........+++++++|||||||.||+|+++|+++...+......++++.+|++++.+|++|..|++
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~  252 (538)
T TIGR03208       173 MTPERDDTPDAAAILAGPRPSPDDVTQLIYTSGTTGEPKGVMHTANTLFSNIHPYAERLELGGGDVILMASPMAHQTGFM  252 (538)
T ss_pred             hccccccccccccccccCCCCCCCeEEEEECCCCCCCCcEEEeehHHHHHHHHHHHhhcCCCCCCeEEEeCCchhHHHHH
Confidence            111000 000    001234678899999999999999999999999998888777778888999999999999999988


Q ss_pred             HHHHHHHhcCceEEecCCCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEE--ecCCChhhHHHHHH
Q psy8225         266 LGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQK  343 (479)
Q Consensus       266 ~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~--G~~l~~~~~~~~~~  343 (479)
                      ..++.++..|+++++.+.+++..+++.+++++++++.++|+++..+..........++++|.++  |+++++++.+++.+
T Consensus       253 ~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~gG~~~~~~~~~~~~~  332 (538)
T TIGR03208       253 YGLMMPLILNATAVLQDIWNPARAAELIRETGVTFTMASTPFLTDLCRAVKESGAPVPSLFTFLCAGAPIPGILVERAWE  332 (538)
T ss_pred             HHHHHHHHcCCEEEecCccCHHHHHHHHHHhCCeEEecCHHHHHHHHhchhccCCCCCcceEEEEcCCCCCHHHHHHHHH
Confidence            8888999999999998889999999999999999999999999988876544444678899877  88999999999999


Q ss_pred             HhCcceeeeeccccccCcccccCCC-----CCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEE
Q psy8225         344 RFGLDRICEFYGATEGNANLMNADG-----KVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILI  418 (479)
Q Consensus       344 ~~~~~~v~~~YG~tE~~~~~~~~~~-----~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~  418 (479)
                      .++. ++++.||+||++.+......     ...++|+|.+      +++++++|++ +.          +++.|+.|||+
T Consensus       333 ~~~~-~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~------g~~v~i~~~~-~~----------~~~~g~~Gel~  394 (538)
T TIGR03208       333 LLGA-LIVSAWGMTENGAVTVTEPDDALEKASTTDGRPLP------GVEVKVIDAN-GA----------KLSQGETGRLL  394 (538)
T ss_pred             HcCC-eEEeeeccCcCCCccccCcccchhhccCcccccCC------CCEEEEECCC-CC----------CCcCCCCcEEE
Confidence            9998 89999999998866543221     1235566554      7899998854 44          56889999999


Q ss_pred             EEeecCCcccccccccCcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         419 GMIKESRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       419 v~~~~~~~~~~~~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                      ++    |+ .++.||+++++.+..       .++|||+|||+|++|+||+++++||.||++
T Consensus       395 v~----g~-~~~~gy~~~~~~~~~-------~~~~~~~TGD~~~~~~~g~l~~~gR~~~~i  443 (538)
T TIGR03208       395 VR----GC-SNFGGYLKRPHLNST-------DAEGWFDTGDLAFQDAEGYIRINGRSKDVI  443 (538)
T ss_pred             Ee----cC-cccccccCCcccccc-------cCCCceeccceEEECCCCcEEEEeccCceE
Confidence            98    77 899999998766531       147999999999999999999999999974

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris.

>PRK05677 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=6.6e-53  Score=432.48  Aligned_cols=402  Identities=20%  Similarity=0.262  Sum_probs=313.7

Q ss_pred             chhHHHHHHHhhcCCCccccEEE---Eeh-hhHHHHHHHHHHHHH-cCCCCCCEEEEEcCCchHHHHHHHHhhhcCceee
Q psy8225          47 TYARPLFVRTIREVPMTGAYKYT---VTF-QVEDHSNRIANFFKS-KGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAA  121 (479)
Q Consensus        47 ~~l~~~l~~~~~~~p~~~a~~~~---~Ty-~l~~~~~~la~~L~~-~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v  121 (479)
                      .++.++|++.++.+|+++|++..   +|| ||.+++.++|++|.+ .|+++||+|+++++|++++++++|||+++|++++
T Consensus        24 ~~~~~~l~~~a~~~p~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~gi~~gd~Vai~~~n~~~~~~~~la~~~~Ga~~v  103 (562)
T PRK05677         24 PNIQAVLKQSCQRFADKPAFSNLGKTLTYGELYKLSGAFAAWLQQHTDLKPGDRIAVQLPNVLQYPVAVFGAMRAGLIVV  103 (562)
T ss_pred             CcHHHHHHHHHHhCCCCeeEEECCceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEe
Confidence            35889999999999999999976   999 999999999999997 5999999999999999999999999999999999


Q ss_pred             eecCCcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCCcce-EEecCCCC--CCCcc-----------------CCC
Q psy8225         122 FINTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGIS-LYAAGTRR--KPQAK-----------------VLP  181 (479)
Q Consensus       122 ~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~-----------------~~~  181 (479)
                      |++|..+.+++.+++++++++++|++......+.+..... .++ ++..+...  .....                 ...
T Consensus       104 ~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (562)
T PRK05677        104 NTNPLYTAREMEHQFNDSGAKALVCLANMAHLAEKVLPKT-GVKHVIVTEVADMLPPLKRLLINAVVKHVKKMVPAYHLP  182 (562)
T ss_pred             ecCCCCCHHHHHHHHhccCceEEEEecchhhhHHHhhhcc-CcceeEEecccccccchhhhhcccchhhccccccccCCc
Confidence            9999999999999999999999999876655444433322 122 22211000  00000                 000


Q ss_pred             ccccccccCCcCCCCCCcccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcC--CC-CCCeEEEeccc
Q psy8225         182 STTLLDEELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTG--LT-SDDVVYTTLPL  258 (479)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~--~~-~~d~~~~~~pl  258 (479)
                      ....+.+.+.........  .....++++++++|||||||.||+|+++|+++...+......+.  +. ..+++++.+|+
T Consensus       183 ~~~~~~~~~~~~~~~~~~--~~~~~~~d~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl  260 (562)
T PRK05677        183 QAVKFNDALAKGAGQPVT--EANPQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALMGSNLNEGCEILIAPLPL  260 (562)
T ss_pred             ccccHHHHHhcCCCCCCC--CCCCCccCEEEEEeCCCCCCCCcEEEEehhHHHHHHHHHHHHhccCCCCCccEEEEcCcH
Confidence            011122222111111100  12345689999999999999999999999999876655544332  33 34688999999


Q ss_pred             hhhhhhHHHHHHHHhcCceEEecC-CCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEE--ecCCCh
Q psy8225         259 YHTAGGLLGIGQCLLGGSTVVIRS-KFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRP  335 (479)
Q Consensus       259 ~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~--G~~l~~  335 (479)
                      +|.+|+...++..+..|.+.++.+ .+++..+++.++++++|.+..+|+++..+..........++++|.++  |+++++
T Consensus       261 ~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~v~~gG~~~~~  340 (562)
T PRK05677        261 YHIYAFTFHCMAMMLIGNHNILISNPRDLPAMVKELGKWKFSGFVGLNTLFVALCNNEAFRKLDFSALKLTLSGGMALQL  340 (562)
T ss_pred             HHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHHHcCceEEecHHHHHHHHHhCcccccCChhhceEEEEcCccCCH
Confidence            999998777777888888776654 57899999999999999999999999998876544444567899877  889999


Q ss_pred             hhHHHHHHHhCcceeeeeccccccCcccccC---CCCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCC
Q psy8225         336 QVWEPFQKRFGLDRICEFYGATEGNANLMNA---DGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAE  412 (479)
Q Consensus       336 ~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~  412 (479)
                      ++.+.|.+.++. ++++.||+||+++++...   ..+++++|.|++      +++++++|++ +.          +++.|
T Consensus       341 ~~~~~~~~~~~~-~v~~~YG~tE~~~~~~~~~~~~~~~~~vG~~~~------~~~v~i~d~~-~~----------~~~~g  402 (562)
T PRK05677        341 ATAERWKEVTGC-AICEGYGMTETSPVVSVNPSQAIQVGTIGIPVP------STLCKVIDDD-GN----------ELPLG  402 (562)
T ss_pred             HHHHHHHHHcCC-CeeccCCccccCcceeecCccCCCCCccCccCC------CCEEEEECCC-CC----------CCCCC
Confidence            999999999998 999999999988665432   234567777665      7899999865 44          56899


Q ss_pred             CCceEEEEeecCCcccccccccCcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         413 EPGILIGMIKESRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       413 ~~Gel~v~~~~~~~~~~~~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                      +.|||+++    |+ .++.||+++++.+++.|.     .+|||+|||+|++|+||++++.||+||++
T Consensus       403 ~~Gel~v~----g~-~~~~gY~~~~~~t~~~~~-----~~g~~~TGDlg~~~~~G~l~i~GR~~d~i  459 (562)
T PRK05677        403 EVGELCVK----GP-QVMKGYWQRPEATDEILD-----SDGWLKTGDIALIQEDGYMRIVDRKKDMI  459 (562)
T ss_pred             CCeEEEEe----cC-ccchhhcCCchhhhhccC-----CCCcccccceEEECCCCcEEEEecCcCeE
Confidence            99999998    77 899999999888776654     37899999999999999999999999974

>PRK05857 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.3e-53  Score=432.34  Aligned_cols=397  Identities=19%  Similarity=0.251  Sum_probs=305.5

Q ss_pred             ccchhHHHHHHHhhcCCCccccEEE-----Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCc
Q psy8225          45 LPTYARPLFVRTIREVPMTGAYKYT-----VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGV  118 (479)
Q Consensus        45 ~~~~l~~~l~~~~~~~p~~~a~~~~-----~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~  118 (479)
                      .|.++.+.|.+.++.+|+++|+++.     +|| ||.+++.++|+.|.+.|+++||+|+++++|++++++++|||+++|+
T Consensus        12 ~~~~~~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~e~~~~~lA~~~~G~   91 (540)
T PRK05857         12 LPSTVLDRVFEQARQQPEAIALRRCDGTSALRYRELVAEVGGLAADLRAQSVSRGSRVLVISDNGPETYLSVLACAKLGA   91 (540)
T ss_pred             CCcchHHHHHHHHhhCCCcEEEeecCCCceeeHHHHHHHHHHHHHHHHHhCcCCCCEEEEEcCCCHHHHHHHHHHHHcCe
Confidence            4456889999999999999999853     999 9999999999999999999999999999999999999999999999


Q ss_pred             eeeeecCCcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCCcceEEecCCCCCCCccCCCccccccccCCcCCCCCC
Q psy8225         119 VAAFINTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSP  198 (479)
Q Consensus       119 ~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (479)
                      +++|+++.++.+++.++++.++++++|++.........+......+.++..+.....      .  .+...+....   .
T Consensus        92 v~v~l~~~~~~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~--~~~~~~~~~~---~  160 (540)
T PRK05857         92 IAVMADGNLPIAAIERFCQITDPAAALVAPGSKMASSAVPEALHSIPVIAVDIAAVT------R--ESEHSLDAAS---L  160 (540)
T ss_pred             EEEecCccCCHHHHHHHHHhcCCceEEEeccchhccccccccccccceeEeeccccc------c--cccccccccc---c
Confidence            999999999999999999999999999987643222222111122222222211100      0  0000000000   0


Q ss_pred             cccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhh----hhcCCCCCCeEEEeccchhhhhhHHHHHHHHhc
Q psy8225         199 TEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGR----YQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLG  274 (479)
Q Consensus       199 ~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~----~~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~  274 (479)
                       ........+++++++|||||||.||||+++|+++.++.....    ..+....+++.++.+|++|..++. ..+.++..
T Consensus       161 -~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~l~-~~~~~l~~  238 (540)
T PRK05857        161 -AGNADQGSEDPLAMIFTSGTTGEPKAVLLANRTFFAVPDILQKEGLNWVTWVVGETTYSPLPATHIGGLW-WILTCLMH  238 (540)
T ss_pred             -ccccCCCCCCeEEEEeCCCCCCCCCeEEEechhhhhhhHHhhhccccccccccCceeeecCCccccchHH-HHHHHhhc
Confidence             001334678899999999999999999999999976654322    123556778999999999999875 46678888


Q ss_pred             CceEEecCCCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEE--ecCCChhhHHHHHHHhCcceeee
Q psy8225         275 GSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICE  352 (479)
Q Consensus       275 G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~--G~~l~~~~~~~~~~~~~~~~v~~  352 (479)
                      |+++++ ...++..+++.++++++|++.++|++++.|.+........++++|.++  |++++....+ +.+.++. ++++
T Consensus       239 G~~~v~-~~~~~~~~~~~i~~~~it~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~~~~~~~~-~~~~~g~-~i~~  315 (540)
T PRK05857        239 GGLCVT-GGENTTSLLEILTTNAVATTCLVPTLLSKLVSELKSANATVPSLRLVGYGGSRAIAADVR-FIEATGV-RTAQ  315 (540)
T ss_pred             ceeEEe-cCCChhHHHHHHHhcCcceEEeChHHHHHHHhccccCCCcCccceEEEEcCccCCchhHH-HHHHhCC-eeec
Confidence            888776 456788999999999999999999999999887655556788999876  7788877765 5567887 9999


Q ss_pred             eccccccCcccccCC--------CCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecC
Q psy8225         353 FYGATEGNANLMNAD--------GKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKES  424 (479)
Q Consensus       353 ~YG~tE~~~~~~~~~--------~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~  424 (479)
                      .||+||++......+        .+++++|+|++      +++++++|++...... ..    .++.|+.|||+++    
T Consensus       316 ~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~------g~~v~i~d~~~~~~~~-~~----~~~~~~~Gel~v~----  380 (540)
T PRK05857        316 VYGLSETGCTALCLPTDDGSIVKIEAGAVGRPYP------GVDVYLAATDGIGPTA-PG----AGPSASFGTLWIK----  380 (540)
T ss_pred             ccCCCcCCceeeecccccccccccccCCcCcccC------CcEEEEECccccCccc-cc----cCCCCCcceEEEe----
Confidence            999999985433221        13467777665      8999999876433221 00    1355789999998    


Q ss_pred             CcccccccccCcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         425 RAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       425 ~~~~~~~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                      |+ +++.||+++++.+.+.|.      +|||+|||+|++|+||++++.||.||++
T Consensus       381 g~-~~~~GY~~~~~~t~~~~~------~g~~~TGDlg~~d~~g~l~~~GR~~~~i  428 (540)
T PRK05857        381 SP-ANMLGYWNNPERTAEVLI------DGWVNTGDLLERREDGFFYIKGRSSEMI  428 (540)
T ss_pred             Cc-chhhhhhCCccchhhhcC------CCceeccceEEEcCCceEEEeccccccE
Confidence            77 899999999877776553      7899999999999999999999999974

>PLN03052 acetate--CoA ligase; Provisional

Probab=100.00  E-value=1.2e-52  Score=437.39  Aligned_cols=409  Identities=17%  Similarity=0.165  Sum_probs=305.2

Q ss_pred             chhHHHHHHHhhcCCCccccEEE-----------Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhh
Q psy8225          47 TYARPLFVRTIREVPMTGAYKYT-----------VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLS  114 (479)
Q Consensus        47 ~~l~~~l~~~~~~~p~~~a~~~~-----------~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~  114 (479)
                      +....+|++++.++|+++|+++.           +|| ||.+++.++|+.|+++|+++||+|+++++|++|+++++|||+
T Consensus       175 n~~~~~l~~~~~~~pd~~Ai~~~~e~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrVai~~pn~~e~via~LA~~  254 (728)
T PLN03052        175 NVAECCLTPKPSKTDDSIAIIWRDEGSDDLPVNRMTLSELRSQVSRVANALDALGFEKGDAIAIDMPMNVHAVIIYLAII  254 (728)
T ss_pred             EHHHHHHHHHhccCCCCeEEEEECCCCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHH
Confidence            44567888877778999999862           999 999999999999999999999999999999999999999999


Q ss_pred             hcCceeeeecCCcchHHHHHHHHhccceEEEeChhhH------HHHHHhhccCCcceEEecCCCC-CCCccCCCcccccc
Q psy8225         115 KIGVVAAFINTNQRQHILIHSIKVAECKAIIYGAELS------EALTEVKDSIPGISLYAAGTRR-KPQAKVLPSTTLLD  187 (479)
Q Consensus       115 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  187 (479)
                      ++|++++|++|.++.+++.+++++++++++|+++...      +...++...... +++++.... ............|+
T Consensus       255 ~~Gav~vpi~p~~~~~~l~~rl~~~~~k~lit~d~~~~~gk~~~~~~~~~~~~~~-~~iv~~~~~~~~~~~~~~~~~~~~  333 (728)
T PLN03052        255 LAGCVVVSIADSFAPSEIATRLKISKAKAIFTQDVIVRGGKSIPLYSRVVEAKAP-KAIVLPADGKSVRVKLREGDMSWD  333 (728)
T ss_pred             HcCCEEEeeCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHhcCC-cEEEEeCCCCccccccccCCccHH
Confidence            9999999999999999999999999999999976432      122222221211 222221110 00000001122344


Q ss_pred             ccCCcCCCC--CCcccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcCCCCCCeEEEeccchhhhhhH
Q psy8225         188 EELPEVSAK--SPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGL  265 (479)
Q Consensus       188 ~~~~~~~~~--~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~  265 (479)
                      +++......  ...........+++++|+|||||||.||||+++|.+++..+......++++++|++++..|++|+++. 
T Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~d~~a~IlyTSGTTG~PKgVv~sh~~~l~~~~~~~~~~~l~~~d~~~~~~~l~w~~g~-  412 (728)
T PLN03052        334 DFLARANGLRRPDEYKAVEQPVEAFTNILFSSGTTGEPKAIPWTQLTPLRAAADAWAHLDIRKGDIVCWPTNLGWMMGP-  412 (728)
T ss_pred             HHHhccccccccccccccccCCCCcEEEEecCCCCCCCceEEECchHHHHHHHHHHHhcCCCCCcEEEECCCcHHHhHH-
Confidence            443322110  00000112356889999999999999999999999987776666666788999999999999999986 


Q ss_pred             HHHHHHHhcCceEEecCC-CChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEE--ecCCChhhHHHHH
Q psy8225         266 LGIGQCLLGGSTVVIRSK-FSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQ  342 (479)
Q Consensus       266 ~~~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~--G~~l~~~~~~~~~  342 (479)
                      +.++.++..|+++++.+. .++..+++.++++++|++.++|++++.|.+.......++++||.+.  |++++++...++.
T Consensus       413 ~~v~~~L~~Gat~vl~~g~p~~~~~~~~i~~~~vT~l~~~Pt~l~~l~~~~~~~~~dlssLr~i~s~Ge~l~~~~~~~~~  492 (728)
T PLN03052        413 WLVYASLLNGATLALYNGSPLGRGFAKFVQDAKVTMLGTVPSIVKTWKNTNCMAGLDWSSIRCFGSTGEASSVDDYLWLM  492 (728)
T ss_pred             HHHHHHHHhCCEEEEeCCCCCCChHHHHHHHHCCCEEEECHHHHHHHHhcCCcccCChhheeEEEecCCCCCHHHHHHHH
Confidence            567789999999999874 4667899999999999999999999999887644556789999887  8999999999988


Q ss_pred             HHhCcceeeeeccccccCcccc-cC---CCCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCC--Cce
Q psy8225         343 KRFGLDRICEFYGATEGNANLM-NA---DGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEE--PGI  416 (479)
Q Consensus       343 ~~~~~~~v~~~YG~tE~~~~~~-~~---~~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~--~Ge  416 (479)
                      +.++..++++.||+||+++.+. ..   +..++++|.|.+      ++++.++|++ |+          +|+.|+  .||
T Consensus       493 ~~~~~~~i~~~yG~TE~~~~~~~~~~~~~~~~g~~g~p~~------g~~v~v~d~~-g~----------~v~~g~~~~GE  555 (728)
T PLN03052        493 SRAGYKPIIEYCGGTELGGGFVTGSLLQPQAFAAFSTPAM------GCKLFILDDS-GN----------PYPDDAPCTGE  555 (728)
T ss_pred             HhcCCCCeEeeccChhhCcccccCCCCCCCCCCccccCCC------CceEEEECCC-CC----------CCCCCCCceEE
Confidence            8877447999999999876433 22   234566666554      8999999954 55          456664  599


Q ss_pred             EEEEeecCCc-ccccccccCcchhHHHHHh-hhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         417 LIGMIKESRA-ESHFNGYADKKASEKKILR-NVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       417 l~v~~~~~~~-~~~~~gY~~~~~~~~~~~~-~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                      |+++    ++ .....+|++++.. ...|. .++..+++||+|||+|++|+||+++|+||.||++
T Consensus       556 L~v~----~~~~~~~~~~~~~~~~-~~yf~~~p~~~g~~~~~tGDl~~~d~dG~l~i~GR~Dd~I  615 (728)
T PLN03052        556 LALF----PLMFGASSTLLNADHY-KVYFKGMPVFNGKILRRHGDIFERTSGGYYRAHGRADDTM  615 (728)
T ss_pred             EEEe----CCCCCCCccccCchhh-hhhhhcCCCCCCCEEEecCceEEECCCCeEEEEecCCCEE
Confidence            9996    33 1334567776432 22221 1111245599999999999999999999999984

>PRK12582 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=2.6e-53  Score=439.74  Aligned_cols=394  Identities=19%  Similarity=0.187  Sum_probs=299.8

Q ss_pred             ccchhHHHHHHHhhcCCCccccEE--------E-Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhh
Q psy8225          45 LPTYARPLFVRTIREVPMTGAYKY--------T-VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLS  114 (479)
Q Consensus        45 ~~~~l~~~l~~~~~~~p~~~a~~~--------~-~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~  114 (479)
                      .+.++.++|+++++.+|+++|+++        . +|| ||.++++++|++|.+.|+++||+|+++++|+++|++++|||+
T Consensus        47 ~~~~l~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~  126 (624)
T PRK12582         47 YPRSIPHLLAKWAAEAPDRPWLAQREPGHGQWRKVTYGEAKRAVDALAQALLDLGLDPGRPVMILSGNSIEHALMTLAAM  126 (624)
T ss_pred             cccCHHHHHHHHHHHCCCchheecccCCCCceEEeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHH
Confidence            346689999999999999999985        3 999 999999999999999999999999999999999999999999


Q ss_pred             hcCceeeeecCCcch-----HHHHHHHHhccceEEEeChhh-HHHHHHhhccCCcceEEecCCCCCCCccCCCccccccc
Q psy8225         115 KIGVVAAFINTNQRQ-----HILIHSIKVAECKAIIYGAEL-SEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDE  188 (479)
Q Consensus       115 ~~G~~~v~l~~~~~~-----~~l~~~l~~~~~~~vi~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (479)
                      ++|++++|++|.++.     +++.++++.++++++|+++.. .......... ...+++.......     ......+.+
T Consensus       127 ~~G~v~vpl~p~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~-----~~~~~~~~~  200 (624)
T PRK12582        127 QAGVPAAPVSPAYSLMSHDHAKLKHLFDLVKPRVVFAQSGAPFARALAALDL-LDVTVVHVTGPGE-----GIASIAFAD  200 (624)
T ss_pred             HcCCeEeeccCccccccCCHHHHHHHHHhcCCcEEEecCHHHHHHHHHhhhh-cCceEEEEcCCCc-----ccccccHHH
Confidence            999999999999875     899999999999999997642 2211111111 1233333322110     001122333


Q ss_pred             cCCcCCCCCCcccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcCCCC---CCeEEEeccchhhhhhH
Q psy8225         189 ELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTS---DDVVYTTLPLYHTAGGL  265 (479)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~---~d~~~~~~pl~h~~g~~  265 (479)
                      +.................++++++|+|||||||.||||++||+++...............   .+++++++|++|.+|+.
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~l~~lPl~h~~g~~  280 (624)
T PRK12582        201 LAATPPTAAVAAAIAAITPDTVAKYLFTSGSTGMPKAVINTQRMMCANIAMQEQLRPREPDPPPPVSLDWMPWNHTMGGN  280 (624)
T ss_pred             HhhcCCcchhhhhhccCCCCceEEEEEcCCCCCCCceEEeeHHHHHHHHHHHHHhccccCCCCCceEEEechHHHHHhHH
Confidence            332211110000012345688999999999999999999999999877665544444333   57999999999999987


Q ss_pred             HHHHHHHhcCceEEecC-CCCh---hHHHHHHHHhcccEEEEehHHHHHHhcCCCCC----CCCCCceeEEE--ecCCCh
Q psy8225         266 LGIGQCLLGGSTVVIRS-KFSA---SNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKP----EDTQHSVKMMI--GNGLRP  335 (479)
Q Consensus       266 ~~~~~~l~~G~~~v~~~-~~~~---~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~----~~~l~~lr~~~--G~~l~~  335 (479)
                      ..++.++..|+++++.+ .+.+   ..+++.++++++|++.++|.+++.|.+.....    ...+++||.++  |+++++
T Consensus       281 ~~~~~~l~~G~tvvl~~~~~~~~~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~slr~i~~gGa~l~~  360 (624)
T PRK12582        281 ANFNGLLWGGGTLYIDDGKPLPGMFEETIRNLREISPTVYGNVPAGYAMLAEAMEKDDALRRSFFKNLRLMAYGGATLSD  360 (624)
T ss_pred             HHHHHHHhCceEEEEcCCCcccchHHHHHHHHHhcCCeEEeccCHHHHHHHHHHhhCHHHHHHHhhheeEEEecCCCCCH
Confidence            77778899999999876 3333   34677788999999999999998887543221    12367899887  889999


Q ss_pred             hhHHHHHHHh----C--cceeeeeccccccCccccc---CCCCCCcccccCccccCCCceeeEEeCCCCCCccccCCCcc
Q psy8225         336 QVWEPFQKRF----G--LDRICEFYGATEGNANLMN---ADGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLC  406 (479)
Q Consensus       336 ~~~~~~~~~~----~--~~~v~~~YG~tE~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~  406 (479)
                      ++.++|.+.+    |  . .+++.||+||++.++..   ...+++++|+|+|      +++++++               
T Consensus       361 ~~~~~~~~~~~~~~g~~~-~l~~~YG~TE~~~~~~~~~~~~~~~~svG~p~p------g~~v~i~---------------  418 (624)
T PRK12582        361 DLYERMQALAVRTTGHRI-PFYTGYGATETAPTTTGTHWDTERVGLIGLPLP------GVELKLA---------------  418 (624)
T ss_pred             HHHHHHHHHHHhhcCCCc-eEEeccccccccceeecccCCCCCCCCCCcCCC------CcEEEEc---------------
Confidence            9999998863    3  4 79999999999866542   2245678888766      7887764               


Q ss_pred             ccccCCCCceEEEEeecCCcccccccccCcchhHHHHHhhhccCCCcEEEcCCeeEE-e---cCCcEEEecCCCCCC
Q psy8225         407 IPCKAEEPGILIGMIKESRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIK-D---KFQYFYFKDRTGDAC  479 (479)
Q Consensus       407 ~~~~~~~~Gel~v~~~~~~~~~~~~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~-d---~dG~l~~~GR~~d~~  479 (479)
                         +.|+.|||+++    |+ +++.|||++++.+.+.|+     .+|||+|||+|++ |   +||+|+|+||+||++
T Consensus       419 ---~~G~~GEl~vr----g~-~v~~GY~~~p~~t~~~f~-----~dgw~~TGDlg~~~d~~~~~g~l~i~GR~~d~i  482 (624)
T PRK12582        419 ---PVGDKYEVRVK----GP-NVTPGYHKDPELTAAAFD-----EEGFYRLGDAARFVDPDDPEKGLIFDGRVAEDF  482 (624)
T ss_pred             ---cCCCceEEEEE----CC-cccccccCCccchhhhcC-----ccCCccccceEEecCCcCCCCceEEeccchhhE
Confidence               34678999998    88 899999999888777664     3799999999998 4   469999999999863

>PLN03102 acyl-activating enzyme; Provisional

Probab=100.00  E-value=1.4e-52  Score=430.63  Aligned_cols=407  Identities=19%  Similarity=0.219  Sum_probs=301.2

Q ss_pred             ccchhHHHHHHHhhcCCCccccEEE---Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCcee
Q psy8225          45 LPTYARPLFVRTIREVPMTGAYKYT---VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVA  120 (479)
Q Consensus        45 ~~~~l~~~l~~~~~~~p~~~a~~~~---~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~  120 (479)
                      .|.++.++|.+.++.+|+++|+++.   +|| ||.++++++|++|.++|+++||+|+|+++|++++++++|||+++|+++
T Consensus        12 ~~~~~~~~l~~~~~~~p~~~Al~~~~~~~Ty~eL~~~~~~~a~~L~~~Gl~~gd~Vai~~~n~~e~~~~~la~~~~G~~~   91 (579)
T PLN03102         12 VPLTPITFLKRASECYPNRTSIIYGKTRFTWPQTYDRCCRLAASLISLNITKNDVVSVLAPNTPAMYEMHFAVPMAGAVL   91 (579)
T ss_pred             ccccHHHHHHHHHHhCCCCeEEEECCcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCcEE
Confidence            3456889999999999999999986   999 999999999999999999999999999999999999999999999999


Q ss_pred             eeecCCcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCC------cceEEecCCCCCCCccCCCccccccccCCcCC
Q psy8225         121 AFINTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIP------GISLYAAGTRRKPQAKVLPSTTLLDEELPEVS  194 (479)
Q Consensus       121 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (479)
                      +|+++.++.+++.++++.++++++|++.+....+.++....+      .++++.++........ ......+.+++....
T Consensus        92 vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  170 (579)
T PLN03102         92 NPINTRLDATSIAAILRHAKPKILFVDRSFEPLAREVLHLLSSEDSNLNLPVIFIHEIDFPKRP-SSEELDYECLIQRGE  170 (579)
T ss_pred             eeccccCCHHHHHHHHhccCCeEEEEChhhHHHHHHHHhhccccccccCceEEEecccccccCC-cccccCHHHHHhccC
Confidence            999999999999999999999999998877665555433222      2334443321110000 001122333332221


Q ss_pred             CCCCc--ccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcCCCCCCeEEEeccchhhhhhHHHHHHHH
Q psy8225         195 AKSPT--EDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCL  272 (479)
Q Consensus       195 ~~~~~--~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l  272 (479)
                      .....  ........+++++|+|||||||.||+|+++|+++............+...+++++.+|++|..|+. ..+.++
T Consensus       171 ~~~~~~~~~~~~~~~~d~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~-~~~~~~  249 (579)
T PLN03102        171 PTPSLVARMFRIQDEHDPISLNYTSGTTADPKGVVISHRGAYLSTLSAIIGWEMGTCPVYLWTLPMFHCNGWT-FTWGTA  249 (579)
T ss_pred             CCCcccccccccCCCCCcEEEEeCCcCCCCCCEEEEecHHHHHHHHHHHhhcCCCCCCeEEecCChhhhcchh-HHHHHH
Confidence            11100  000123568899999999999999999999999765444443444566778899999999998874 445677


Q ss_pred             hcCceEEecCCCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEE--ecCCChhhHHHHHHHhCccee
Q psy8225         273 LGGSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRI  350 (479)
Q Consensus       273 ~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~--G~~l~~~~~~~~~~~~~~~~v  350 (479)
                      ..|+++++.+.+++..+++.|+++++|++.++|+++..|.+.........++++.++  |+++++.+.+++.+ +|. ++
T Consensus       250 ~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~-~g~-~i  327 (579)
T PLN03102        250 ARGGTSVCMRHVTAPEIYKNIEMHNVTHMCCVPTVFNILLKGNSLDLSPRSGPVHVLTGGSPPPAALVKKVQR-LGF-QV  327 (579)
T ss_pred             HhcCcEEeeccCChHHHHHHHHHcCCeEEEeChHHHHHHHhCcccccCCcccceEEEECCCCCCHHHHHHHHH-cCC-eE
Confidence            888888888888899999999999999999999999999876543322334455444  77788888888764 687 89


Q ss_pred             eeeccccccCcccccCC--C----CC--------CcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCce
Q psy8225         351 CEFYGATEGNANLMNAD--G----KV--------GAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGI  416 (479)
Q Consensus       351 ~~~YG~tE~~~~~~~~~--~----~~--------~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Ge  416 (479)
                      ++.||+||+++.+....  .    .+        ...|.+   .++.  ..+.+.|++.++.+        +...++.||
T Consensus       328 ~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~---~~~~--~~v~i~~~~~~~~v--------~~~~~~~GE  394 (579)
T PLN03102        328 MHAYGLTEATGPVLFCEWQDEWNRLPENQQMELKARQGVS---ILGL--ADVDVKNKETQESV--------PRDGKTMGE  394 (579)
T ss_pred             EeecCccccCccccccccccccccCCcccccccccCCCcc---cccc--cceEEecccccccc--------CCCCCCceE
Confidence            99999999875433211  0    00        011211   1122  23444565544422        112246899


Q ss_pred             EEEEeecCCcccccccccCcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         417 LIGMIKESRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       417 l~v~~~~~~~~~~~~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                      |+++    |+ +++.|||++++.+.+.|.      +|||+|||+|++|+||++++.||.||++
T Consensus       395 l~v~----g~-~~~~GY~~~~~~t~~~f~------~gw~~TGDlg~~d~dG~l~i~GR~~d~i  446 (579)
T PLN03102        395 IVIK----GS-SIMKGYLKNPKATSEAFK------HGWLNTGDVGVIHPDGHVEIKDRSKDII  446 (579)
T ss_pred             EEEE----Cc-chhhhhcCChhhhHhhhc------cCceecCceEEEcCCCeEEEEeccCcEE
Confidence            9998    77 899999999888877664      7899999999999999999999999974

>PRK13388 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=2.5e-52  Score=425.68  Aligned_cols=394  Identities=27%  Similarity=0.439  Sum_probs=314.0

Q ss_pred             chhHHHHHHHhhcCCCccccEEE---Eeh-hhHHHHHHHHHHHHHcCC-CCCCEEEEEcCCchHHHHHHHHhhhcCceee
Q psy8225          47 TYARPLFVRTIREVPMTGAYKYT---VTF-QVEDHSNRIANFFKSKGL-QRGDAVALFMEGQPEYVCMWLGLSKIGVVAA  121 (479)
Q Consensus        47 ~~l~~~l~~~~~~~p~~~a~~~~---~Ty-~l~~~~~~la~~L~~~gi-~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v  121 (479)
                      .++.++|..++  .|+++|+++.   +|| ||.++++++|..|.++|+ .+||+|+++++|+++++++++||+++|++++
T Consensus         3 ~~~~~~l~~~~--~p~~~Al~~~~~~lTy~el~~~~~~la~~L~~~g~~~~~~~V~i~~~n~~~~v~~~lA~~~~Ga~~v   80 (540)
T PRK13388          3 DTIAQLLRDRA--GDDTIAVRYGDRTWTWREVLAEAAARAAALIALADPDRPLHVGVLLGNTPEMLFWLAAAALGGYVLV   80 (540)
T ss_pred             hhHHHHHHhhc--cCCceEEEECCceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCcHHHHHHHHHHhCCCEEE
Confidence            45778887764  6999999886   999 999999999999999999 7999999999999999999999999999999


Q ss_pred             eecCCcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCCcceEEecCCCCCCCccCCCccccccccCCcCCCCCCccc
Q psy8225         122 FINTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTED  201 (479)
Q Consensus       122 ~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (479)
                      |++|.++.+++.++++.++++++|++.+....+.+..  .+.++++..+..            .+.+++.......+.  
T Consensus        81 ~l~p~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~--~~~~~~i~~~~~------------~~~~~~~~~~~~~~~--  144 (540)
T PRK13388         81 GLNTTRRGAALAADIRRADCQLLVTDAEHRPLLDGLD--LPGVRVLDVDTP------------AYAELVAAAGALTPH--  144 (540)
T ss_pred             EecccCChHHHHHHHHhcCCCEEEEChhhhHHHHhhc--ccCceEEEccch------------hhhhhhccccCcCCC--
Confidence            9999999999999999999999999887665544331  223344333211            122222211111110  


Q ss_pred             ccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcCCCCCCeEEEeccchhhhhhHHHHHHHHhcCceEEec
Q psy8225         202 IKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIR  281 (479)
Q Consensus       202 ~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G~~~v~~  281 (479)
                       ....++++++++|||||||.||||.++|+++...+......+++..+|++++.+|++|.+|+...++.++..|+++++.
T Consensus       145 -~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~l~~G~~~v~~  223 (540)
T PRK13388        145 -REVDAMDPFMLIFTSGTTGAPKAVRCSHGRLAFAGRALTERFGLTRDDVCYVSMPLFHSNAVMAGWAPAVASGAAVALP  223 (540)
T ss_pred             -CCCCCCCeEEEEECCCCCCCCCEEEecHHHHHHHHHHHHHHhCCCCCCEEEEeeCchhhcchHHHHHHHHHcCcEEEEC
Confidence             2345689999999999999999999999999988887778888999999999999999998876666789999999998


Q ss_pred             CCCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEEecCCChhhHHHHHHHhCcceeeeeccccccCc
Q psy8225         282 SKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMIGNGLRPQVWEPFQKRFGLDRICEFYGATEGNA  361 (479)
Q Consensus       282 ~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~G~~l~~~~~~~~~~~~~~~~v~~~YG~tE~~~  361 (479)
                      +.+++..+++.++++++|++..+|..+..+............+++.++|+.+.++..+.|.+.++. ++++.||+||++.
T Consensus       224 ~~~~~~~~~~~i~~~~vt~~~~~p~~l~~l~~~~~~~~~~~~~l~~~~G~~~~~~~~~~~~~~~~~-~l~~~YG~tE~~~  302 (540)
T PRK13388        224 AKFSASGFLDDVRRYGATYFNYVGKPLAYILATPERPDDADNPLRVAFGNEASPRDIAEFSRRFGC-QVEDGYGSSEGAV  302 (540)
T ss_pred             CCCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCCCCccccccceEEEECCCCCHHHHHHHHHHhCC-ceecccccccccc
Confidence            888999999999999999999999999988876544333345778777888999999999999998 8999999999986


Q ss_pred             ccccCC-CCCCcccccCccccCCCceeeEEeCCCCCC----ccccCCCccccccCCCCceEEEEeecCCcccccccccCc
Q psy8225         362 NLMNAD-GKVGAVGYIPYIAIPFYPVGLIKCDPETSE----PIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNGYADK  436 (479)
Q Consensus       362 ~~~~~~-~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~----~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~gY~~~  436 (479)
                      ++...+ ..++++|+|++      ++++  +|+++..    .+.|++|... .+.++.|||+++   +|+ +++.||+++
T Consensus       303 ~~~~~~~~~~~~vG~p~~------g~~i--~~~~~~~~~~~~~~d~~g~~~-~~~~~~GEl~v~---~g~-~~~~gY~~~  369 (540)
T PRK13388        303 IVVREPGTPPGSIGRGAP------GVAI--YNPETLTECAVARFDAHGALL-NADEAIGELVNT---AGA-GFFEGYYNN  369 (540)
T ss_pred             eeecCCCCCCCCCCCCCC------CcEE--EcCCCCccccceeccCccccc-cCCCcceEEEEe---cCC-cccccccCC
Confidence            655322 34567787665      5443  4444322    1345555321 145678999986   155 899999999


Q ss_pred             chhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         437 KASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       437 ~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                      ++.+++.+.      +|||+|||+|++|+||++++.||+||++
T Consensus       370 ~~~t~~~~~------~g~~~TGD~~~~~~dg~l~i~GR~~d~i  406 (540)
T PRK13388        370 PEATAERMR------HGMYWSGDLAYRDADGWIYFAGRTADWM  406 (540)
T ss_pred             hHHHHHHhh------cCceeccceEEEcCCCcEEEeccCCceE
Confidence            888877664      7899999999999999999999999974

>PRK07514 malonyl-CoA synthase; Validated

Probab=100.00  E-value=2.4e-52  Score=423.67  Aligned_cols=391  Identities=25%  Similarity=0.289  Sum_probs=322.5

Q ss_pred             chhHHHHHHHhhcCCCccccEEE----Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCceee
Q psy8225          47 TYARPLFVRTIREVPMTGAYKYT----VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAA  121 (479)
Q Consensus        47 ~~l~~~l~~~~~~~p~~~a~~~~----~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v  121 (479)
                      .+|.+++..++ .+|+++|+.+.    +|| ||.++++++|.+|++.|+++||+|+++++|+++++++++||+++|++++
T Consensus         3 ~~l~~~~~~~~-~~~~~~a~~~~~~~~~Ty~eL~~~~~~la~~L~~~g~~~gd~v~i~~~~~~e~~v~~la~~~~G~~~v   81 (504)
T PRK07514          3 NNLFDALRAAF-ADRDAPFIETPDGLRYTYGDLDAASARLANLLVALGVKPGDRVAVQVEKSPEALALYLATLRAGAVFL   81 (504)
T ss_pred             ccHHHHHHHHh-hCCCCeEEEeCCCCEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEE
Confidence            35789999999 99999999874    999 9999999999999999999999999999999999999999999999999


Q ss_pred             eecCCcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCCcceEEecCCCCCCCccCCCccccccccCCcCCCCCCccc
Q psy8225         122 FINTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTED  201 (479)
Q Consensus       122 ~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (479)
                      |+++..+.+++.++++.+++++++++......+...........++..+....         ..+.+.........   .
T Consensus        82 ~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~---~  149 (504)
T PRK07514         82 PLNTAYTLAELDYFIGDAEPALVVCDPANFAWLSKIAAAAGAPHVETLDADGT---------GSLLEAAAAAPDDF---E  149 (504)
T ss_pred             ECCCCCCHHHHHHHHHhCCCcEEEEccchhHHHHHhhhccCCceEEEecCCCc---------ccHHHhhhhcCccc---C
Confidence            99999999999999999999999998876665555433332222332222110         00111111111111   0


Q ss_pred             ccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcCCCCCCeEEEeccchhhhhhHHHHHHHHhcCceEEec
Q psy8225         202 IKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIR  281 (479)
Q Consensus       202 ~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G~~~v~~  281 (479)
                      ......+++++++|||||||.||+|.++|+++...+......+++..+|++++.+|++|..|++..+..++..|+++++.
T Consensus       150 ~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~  229 (504)
T PRK07514        150 TVPRGADDLAAILYTSGTTGRSKGAMLSHGNLLSNALTLVDYWRFTPDDVLIHALPIFHTHGLFVATNVALLAGASMIFL  229 (504)
T ss_pred             cccCCCCCeEEEEECCCCCCCCcEEEEecHHHHHHHHHHHHHhCCCCccEEEEecchHHHHHHHHHHHHHHhcCcEEEEC
Confidence            13346788999999999999999999999999988887777888899999999999999999888888899999999999


Q ss_pred             CCCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEE--ecCCChhhHHHHHHHhCcceeeeecccccc
Q psy8225         282 SKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFYGATEG  359 (479)
Q Consensus       282 ~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~--G~~l~~~~~~~~~~~~~~~~v~~~YG~tE~  359 (479)
                      +..++..+++.+  .++|.+..+|+++..++.........++++|.++  |+++++++.+.|.+.++. ++++.||+||+
T Consensus       230 ~~~~~~~~~~~i--~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~-~~~~~YG~tE~  306 (504)
T PRK07514        230 PKFDPDAVLALM--PRATVMMGVPTFYTRLLQEPRLTREAAAHMRLFISGSAPLLAETHREFQERTGH-AILERYGMTET  306 (504)
T ss_pred             CCCCHHHHHHHH--HhheeeecHHHHHHHHHcCCCCCcccccceeeEEecCCCCCHHHHHHHHHHhCC-cceeecccccc
Confidence            989999999988  4799999999999999887665555678899887  788999999999999998 89999999999


Q ss_pred             CcccccC---CCCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCcccccccccCc
Q psy8225         360 NANLMNA---DGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNGYADK  436 (479)
Q Consensus       360 ~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~gY~~~  436 (479)
                      +......   ....+++|.|++      +++++++|++++.          +++.|+.|||+++    |+ .++.||+++
T Consensus       307 ~~~~~~~~~~~~~~~~~G~~~~------~~~v~i~d~~~~~----------~~~~g~~Gel~i~----~~-~~~~gy~~~  365 (504)
T PRK07514        307 NMNTSNPYDGERRAGTVGFPLP------GVSLRVTDPETGA----------ELPPGEIGMIEVK----GP-NVFKGYWRM  365 (504)
T ss_pred             cccccCCccccccCcccccCCC------CcEEEEEECCCCC----------CCCCCCceEEEEe----cC-CccccccCC
Confidence            8655432   223455666554      7999999987777          5688999999998    77 899999999


Q ss_pred             chhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         437 KASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       437 ~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                      ++.+++.|.     .++||+|||+|++|++|++++.||.||++
T Consensus       366 ~~~~~~~~~-----~~~~~~TGDl~~~~~~g~~~~~GR~~~~i  403 (504)
T PRK07514        366 PEKTAEEFR-----ADGFFITGDLGKIDERGYVHIVGRGKDLI  403 (504)
T ss_pred             chhhhhhcc-----cCCCeeecceEEEcCCccEEEeccccceE
Confidence            887776654     27899999999999999999999999974

>PRK07769 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=8.8e-53  Score=436.95  Aligned_cols=389  Identities=17%  Similarity=0.179  Sum_probs=301.9

Q ss_pred             chhHHHHHHHhhcCCCccccEE-----------E-Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHh
Q psy8225          47 TYARPLFVRTIREVPMTGAYKY-----------T-VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGL  113 (479)
Q Consensus        47 ~~l~~~l~~~~~~~p~~~a~~~-----------~-~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~  113 (479)
                      .++.++|+++++.+|+++|+++           . +|| ||.++++++|++|.+. +++||+|+++++|+++|++++|||
T Consensus        21 ~~l~~~l~~~a~~~~~~~a~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~-~~~gd~V~i~~~n~~e~~~~~lA~   99 (631)
T PRK07769         21 TNLVRHVERWAKVRGDKLAYRFLDFSTERDGVARDLTWSQFGARNRAVGARLQQV-TKPGDRVAILAPQNLDYLIAFFGA   99 (631)
T ss_pred             CCHHHHHHHHHHhCCCCeEEEEeccCCCCCCceeEeeHHHHHHHHHHHHHHHHHh-cCCCCEEEEEcCCChHHHHHHHHH
Confidence            5689999999999999999985           2 999 9999999999999987 899999999999999999999999


Q ss_pred             hhcCceeeee-cCCcc--hHHHHHHHHhccceEEEeChhhHHHHHHhhccCCc---ceEEecCCCCCCCccCCCcccccc
Q psy8225         114 SKIGVVAAFI-NTNQR--QHILIHSIKVAECKAIIYGAELSEALTEVKDSIPG---ISLYAAGTRRKPQAKVLPSTTLLD  187 (479)
Q Consensus       114 ~~~G~~~v~l-~~~~~--~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~  187 (479)
                      +++|++++|+ ++..+  .+++.+++++++++++|++.+..+.+.+.....+.   ..++..+...              
T Consensus       100 ~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------  165 (631)
T PRK07769        100 LYAGRIAVPLFDPAEPGHVGRLHAVLDDCTPSAILTTTDSAEGVRKFFRARPAKERPRVIAVDAVP--------------  165 (631)
T ss_pred             HHcCCEEEeeCCCCccchHHHHHHHHHhCCCCEEEEChHHHHHHHHHHhhccccccceEEEccccc--------------
Confidence            9999999999 45554  67899999999999999988766555443332221   1222221100              


Q ss_pred             ccCCcCCCCCCcccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcCCCCCCeEEEeccchhhhhhHHH
Q psy8225         188 EELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLG  267 (479)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~  267 (479)
                      ....   ....   .....++++++|+|||||||.||||+++|+++...+......+++..++++++.+|++|.+|+.. 
T Consensus       166 ~~~~---~~~~---~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~Pl~h~~gl~~-  238 (631)
T PRK07769        166 DEVG---ATWV---PPEANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDALEGQEGDRGVSWLPFFHDMGLIT-  238 (631)
T ss_pred             cccc---cccC---CCCCCCCCeEEEEeCCCCCCCCcEEEEcHHHHHHHHHHHHHHcCCCCcceEEEeCCCcCchhhHH-
Confidence            0000   0000   02345688999999999999999999999999988877777788889999999999999999865 


Q ss_pred             HHHHHhcCceEEecC--CC--ChhHHHHHHHHhcc---cEEEEehHHHHHHhcC---CC--CCCCCCCceeEEE--ecCC
Q psy8225         268 IGQCLLGGSTVVIRS--KF--SASNFWKDCIKYNC---TVAQYIGEMCRYLLAV---PE--KPEDTQHSVKMMI--GNGL  333 (479)
Q Consensus       268 ~~~~l~~G~~~v~~~--~~--~~~~~~~~i~~~~~---t~~~~~p~~l~~l~~~---~~--~~~~~l~~lr~~~--G~~l  333 (479)
                      ++.+++.|+++++..  .+  ++..+++.++++++   +.+..+|+++..+...   ..  ....++++||.++  |+++
T Consensus       239 ~~~~~~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~lr~~~~gg~~l  318 (631)
T PRK07769        239 VLLPALLGHYITFMSPAAFVRRPGRWIRELARKPGGTGGTFSAAPNFAFEHAAARGLPKDGEPPLDLSNVKGLLNGSEPV  318 (631)
T ss_pred             HHHHHhhCCeEEEEChHHHHhCHHHHHHHHHhhccccCceEeeCCchHHHHHHhhccchhcccCcchhheeeEEeccCCC
Confidence            445666788887764  34  88999999999886   7888999887766542   11  1134678999877  7889


Q ss_pred             ChhhHHHHHHHhC---c--ceeeeeccccccCcccccCCCC------------------------------CCcccccCc
Q psy8225         334 RPQVWEPFQKRFG---L--DRICEFYGATEGNANLMNADGK------------------------------VGAVGYIPY  378 (479)
Q Consensus       334 ~~~~~~~~~~~~~---~--~~v~~~YG~tE~~~~~~~~~~~------------------------------~~~~g~~~~  378 (479)
                      ++++.++|.+.|+   .  ..+++.||+||++..+...+..                              ..++|+|. 
T Consensus       319 ~~~~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~G~~~-  397 (631)
T PRK07769        319 SPASMRKFNEAFAPYGLPPTAIKPSYGMAEATLFVSTTPMDEEPTVIYVDRDELNAGRFVEVPADAPNAVAQVSAGKVG-  397 (631)
T ss_pred             CHHHHHHHHHHHhhcCCChhhcccccchhhheeEEeccCCCCCceEEEEcHHHHhCCCeEecCCCCCCceeEEeCCCcC-
Confidence            9999999999883   2  2599999999987654422110                              12444443 


Q ss_pred             cccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCcccccccccCcchhHHHHHhhhc----------
Q psy8225         379 IAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNGYADKKASEKKILRNVY----------  448 (479)
Q Consensus       379 ~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~gY~~~~~~~~~~~~~~~----------  448 (479)
                           ++.+++++|+++++          +++.|+.|||+++    || +++.|||++++.+.+.|.+..          
T Consensus       398 -----~~~~~~ivd~~~g~----------~~~~ge~GEl~v~----gp-~v~~GY~~~~~~t~~~f~~~~~~~~~~~~~~  457 (631)
T PRK07769        398 -----VSEWAVIVDPETAS----------ELPDGQIGEIWLH----GN-NIGTGYWGKPEETAATFQNILKSRLSESHAE  457 (631)
T ss_pred             -----CCcEEEEEcCCCCc----------CCCCCCEEEEEec----CC-CccccccCChhHHHHHHhhhccccccccccc
Confidence                 47888999977776          5688999999998    88 999999999888877664211          


Q ss_pred             --cCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         449 --SHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       449 --~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                        ..++|||+|||+|+++ ||+|+|+||+||++
T Consensus       458 ~~~~~~gw~~TGDlg~~~-dG~l~i~GR~~d~I  489 (631)
T PRK07769        458 GAPDDALWVRTGDYGVYF-DGELYITGRVKDLV  489 (631)
T ss_pred             CcccCCCeeeccccccEE-CCEEEEEcccccEE
Confidence              1235899999999995 99999999999985

>PRK07867 acyl-CoA synthetase; Validated

Probab=100.00  E-value=4.4e-52  Score=422.56  Aligned_cols=383  Identities=26%  Similarity=0.483  Sum_probs=308.7

Q ss_pred             chhHHHHHHHhhcCCCccccEEE---Eeh-hhHHHHHHHHHHHHHc-CCCCCCEEEEEcCCchHHHHHHHHhhhcCceee
Q psy8225          47 TYARPLFVRTIREVPMTGAYKYT---VTF-QVEDHSNRIANFFKSK-GLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAA  121 (479)
Q Consensus        47 ~~l~~~l~~~~~~~p~~~a~~~~---~Ty-~l~~~~~~la~~L~~~-gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v  121 (479)
                      .++.++|.+++.  ++++|+.+.   +|| ||.+++.++|++|+++ |++++++|+++++|+++++++++||+++|++++
T Consensus         5 ~~~~~~l~~~a~--~~~~a~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v   82 (529)
T PRK07867          5 PTVAELLLPLAE--DDDRGLYFEDSFTSWREHIRGSAARAAALRARLDPTRPPHVGVLLDNTPEFSLLLGAAALSGIVPV   82 (529)
T ss_pred             ccHHHHHHHhcc--cCCceEEECCcEEeHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence            457889988875  788998886   999 9999999999999997 899999999999999999999999999999999


Q ss_pred             eecCCcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCCcceEEecCCCCCCCccCCCccccccccCCcCCCCCCccc
Q psy8225         122 FINTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTED  201 (479)
Q Consensus       122 ~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (479)
                      |+++..+.+++.+++++++++++|+++.....+..+.   +.+.++.....            .+.+.+.........  
T Consensus        83 ~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~---~~~~~~~~~~~------------~~~~~l~~~~~~~~~--  145 (529)
T PRK07867         83 GLNPTRRGAALARDIAHADCQLVLTESAHAELLDGLD---PGVRVINVDSP------------AWADELAAHRDAEPP--  145 (529)
T ss_pred             EecCCCChHHHHHHHHhCCCeEEEECHhHHHHHHhhc---cCceEEEeccc------------cHHHHhcccCCCCCC--
Confidence            9999999999999999999999999987766544432   22333322210            122222211111111  


Q ss_pred             ccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcCCCCCCeEEEeccchhhhhhHHHHHHHHhcCceEEec
Q psy8225         202 IKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIR  281 (479)
Q Consensus       202 ~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G~~~v~~  281 (479)
                      .....++++++++|||||||.||+|+++|+++...+......+++..+|++++.+|++|.++++..+..++..|+++++.
T Consensus       146 ~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~  225 (529)
T PRK07867        146 FRVADPDDLFMLIFTSGTSGDPKAVRCTHRKVASAGVMLAQRFGLGPDDVCYVSMPLFHSNAVMAGWAVALAAGASIALR  225 (529)
T ss_pred             cccCCccceEEEEECCCCCCCCcEEEecHHHHHHHHHHHHHhhCCCcccEEEEecchhHHHHHHHHHHHHHhcCceEEec
Confidence            13346788999999999999999999999999888888778888899999999999999999877788889999999998


Q ss_pred             CCCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEE-ecCCChhhHHHHHHHhCcceeeeeccccccC
Q psy8225         282 SKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI-GNGLRPQVWEPFQKRFGLDRICEFYGATEGN  360 (479)
Q Consensus       282 ~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~-G~~l~~~~~~~~~~~~~~~~v~~~YG~tE~~  360 (479)
                      +.+++..+++.++++++|++..+|+.+..++..........+++|.++ |+.+++ ...+|.+.+|. ++++.||+||++
T Consensus       226 ~~~~~~~~~~~i~~~~vt~~~~~p~~~~~ll~~~~~~~~~~~~lr~~~gg~~~~~-~~~~~~~~~g~-~l~~~YG~TE~~  303 (529)
T PRK07867        226 RKFSASGFLPDVRRYGATYANYVGKPLSYVLATPERPDDADNPLRIVYGNEGAPG-DIARFARRFGC-VVVDGFGSTEGG  303 (529)
T ss_pred             CCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCCcccccccceEEEecCCCChH-HHHHHHHHhCC-cEEEeecccccc
Confidence            889999999999999999999999999988876554333456888777 455554 46788888998 899999999998


Q ss_pred             cccccC-CCCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCC------------CceEEE-EeecCCc
Q psy8225         361 ANLMNA-DGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEE------------PGILIG-MIKESRA  426 (479)
Q Consensus       361 ~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~------------~Gel~v-~~~~~~~  426 (479)
                      ..+... ...++++|.|.+      +  +.++|+++++          +|+.|+            .|||++ +    |+
T Consensus       304 ~~~~~~~~~~~~~~g~~~~------~--~~i~~~~~~~----------~~~~g~~~~~~~~~~~~~~Gel~i~~----g~  361 (529)
T PRK07867        304 VAITRTPDTPPGALGPLPP------G--VAIVDPDTGT----------ECPPAEDADGRLLNADEAIGELVNTA----GP  361 (529)
T ss_pred             cccccCCCCCCCCcCCCCC------C--EEEEECCCCC----------CCCCCccccccccccCCcceEEEEec----CC
Confidence            655432 234466777654      5  5566766555          345555            899998 7    77


Q ss_pred             ccccccccCcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         427 ESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       427 ~~~~~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                       +++.||+++++.+.+.+.      +|||+|||+|++|++|++++.||.||++
T Consensus       362 -~~~~gy~~~~~~~~~~~~------~g~~~TGD~~~~~~~g~l~~~GR~~d~i  407 (529)
T PRK07867        362 -GGFEGYYNDPEADAERMR------GGVYWSGDLAYRDADGYAYFAGRLGDWM  407 (529)
T ss_pred             -cccccccCChHhhhhhhc------CCeEeeccEEEEeCCCcEEEeccccCeE
Confidence             899999999887776553      7899999999999999999999999974

>PRK08315 AMP-binding domain protein; Validated

Probab=100.00  E-value=2e-52  Score=429.51  Aligned_cols=403  Identities=25%  Similarity=0.327  Sum_probs=323.6

Q ss_pred             ccchhHHHHHHHhhcCCCccccEEE-----Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCc
Q psy8225          45 LPTYARPLFVRTIREVPMTGAYKYT-----VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGV  118 (479)
Q Consensus        45 ~~~~l~~~l~~~~~~~p~~~a~~~~-----~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~  118 (479)
                      ...++.++|.+.++.+|+++|+++.     +|| ||.++++++|..|.+.|+++||+|+++++|++++++++|||+++|+
T Consensus        14 ~~~~l~~~l~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~~G~   93 (559)
T PRK08315         14 LEQTIGQLLDRTAARYPDREALVYRDQGLRWTYREFNEEVDALAKGLLALGIEKGDRVGIWAPNVPEWVLTQFATAKIGA   93 (559)
T ss_pred             hhccHHHHHHHHHHHCCCCeEEEEcCCCeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHHhCe
Confidence            3356899999999999999999873     999 9999999999999999999999999999999999999999999999


Q ss_pred             eeeeecCCcchHHHHHHHHhccceEEEeChhhH-----HHHHHhhccC-------------Ccc-eEEecCCCCCCCccC
Q psy8225         119 VAAFINTNQRQHILIHSIKVAECKAIIYGAELS-----EALTEVKDSI-------------PGI-SLYAAGTRRKPQAKV  179 (479)
Q Consensus       119 ~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~-------------~~~-~~~~~~~~~~~~~~~  179 (479)
                      +++|++|..+.+++..+++.+++++++++....     ..+.+.....             +.. .++..+....     
T Consensus        94 ~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  168 (559)
T PRK08315         94 ILVTINPAYRLSELEYALNQSGCKALIAADGFKDSDYVAMLYELAPELATCEPGQLQSARLPELRRVIFLGDEKH-----  168 (559)
T ss_pred             EEEecCccCCHHHHHHHHHhcCCCEEEEeccccccchHHHHHHhhhhhhcccccccccccCCCceeEEeecccCC-----
Confidence            999999999999999999999999999976432     1222221111             111 1222221110     


Q ss_pred             CCccccccccCCcCCC---CCCcccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcCCCCCCeEEEec
Q psy8225         180 LPSTTLLDEELPEVSA---KSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTL  256 (479)
Q Consensus       180 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~  256 (479)
                       .....++++......   ............+++++++|||||||.||+|.++|+++...+......++++.+|+++..+
T Consensus       169 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~  247 (559)
T PRK08315        169 -PGMLNFDELLALGRAVDDAELAARQATLDPDDPINIQYTSGTTGFPKGATLTHRNILNNGYFIGEAMKLTEEDRLCIPV  247 (559)
T ss_pred             -cccccHHHHHhhccccccccccchhccCCCCCcEEEEEcCCCCCCcceEEeeHHHHHHHHHHHHHhcCCCCCceEEEec
Confidence             111223322221110   0000011234567899999999999999999999999998888888888899999999999


Q ss_pred             cchhhhhhHHHHHHHHhcCceEEe-cCCCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEE--ecCC
Q psy8225         257 PLYHTAGGLLGIGQCLLGGSTVVI-RSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGL  333 (479)
Q Consensus       257 pl~h~~g~~~~~~~~l~~G~~~v~-~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~--G~~l  333 (479)
                      |++|.+|+...++.++..|+++++ ...+++..+++.+.++++|++.++|+++..++.........++++|.++  |+++
T Consensus       248 p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~~~~~~~~~~~~~~~lr~~~~~G~~~  327 (559)
T PRK08315        248 PLYHCFGMVLGNLACVTHGATMVYPGEGFDPLATLAAVEEERCTALYGVPTMFIAELDHPDFARFDLSSLRTGIMAGSPC  327 (559)
T ss_pred             CcHHHHHHHHHHHHHHhccceEEEecCCCCHHHHHHHHHHcCCeEEecchHHHHHHHhCcccCCCCchhhheeEecCCCC
Confidence            999999988888999999999984 4568999999999999999999999999988877655555688999865  8999


Q ss_pred             ChhhHHHHHHHhCcceeeeeccccccCcccccCC------CCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccc
Q psy8225         334 RPQVWEPFQKRFGLDRICEFYGATEGNANLMNAD------GKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCI  407 (479)
Q Consensus       334 ~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~------~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~  407 (479)
                      ++++.+.+.+.++..++++.||+||++.++....      .++.++|+|++      ++++.++|+++++          
T Consensus       328 ~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~------~~~v~i~d~~~~~----------  391 (559)
T PRK08315        328 PIEVMKRVIDKMHMSEVTIAYGMTETSPVSTQTRTDDPLEKRVTTVGRALP------HLEVKIVDPETGE----------  391 (559)
T ss_pred             CHHHHHHHHHHcCCcceeEEEcccccccceeecCcccchhhccCCCCccCC------CcEEEEEcCccCC----------
Confidence            9999999999998856999999999987654322      23556677655      7999999988676          


Q ss_pred             cccCCCCceEEEEeecCCcccccccccCcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         408 PCKAEEPGILIGMIKESRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       408 ~~~~~~~Gel~v~~~~~~~~~~~~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                      +|+.|+.|||+++    |+ +++.||++++..++..+.     .++||+|||+|++|+||+++++||.||++
T Consensus       392 ~~~~g~~GEl~v~----g~-~~~~gy~~~~~~~~~~~~-----~~~~~~TGD~~~~~~dg~~~~~GR~d~~i  453 (559)
T PRK08315        392 TVPRGEQGELCTR----GY-SVMKGYWNDPEKTAEAID-----ADGWMHTGDLAVMDEEGYVNIVGRIKDMI  453 (559)
T ss_pred             cCCCCCceEEEEE----Cc-hhhhhhcCChhHHhhcCC-----CCCCEEccceEEEcCCceEEEEeeccceE
Confidence            5688999999998    77 899999998877765542     37899999999999999999999999974

>PRK06087 short chain acyl-CoA synthetase; Reviewed

Probab=100.00  E-value=5.6e-52  Score=424.77  Aligned_cols=399  Identities=21%  Similarity=0.285  Sum_probs=319.8

Q ss_pred             cccchhHHHHHHHhhcCCCccccEEE----Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCc
Q psy8225          44 TLPTYARPLFVRTIREVPMTGAYKYT----VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGV  118 (479)
Q Consensus        44 ~~~~~l~~~l~~~~~~~p~~~a~~~~----~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~  118 (479)
                      +...++.++|++.++.+|+++|+++.    +|| ||.++++++|+.|++.|+++||+|+++++|+++++++++||+++|+
T Consensus        20 ~~~~~l~~~~~~~~~~~pd~~a~~~~~~~~~Ty~~l~~~v~~la~~l~~~G~~~gd~V~i~~~n~~~~~~~~lA~~~~G~   99 (547)
T PRK06087         20 WGDASLADYWQQTARAMPDKIAVVDNHGASYTYSALDHAASRLANWLLAKGIEPGDRVAFQLPGWCEFTIIYLACLKVGA   99 (547)
T ss_pred             CCCCCHHHHHHHHHHHCCCceEEEcCCCCEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCc
Confidence            34467899999999999999999974    999 9999999999999999999999999999999999999999999999


Q ss_pred             eeeeecCCcchHHHHHHHHhccceEEEeChh-----hHHHHHHhhccCCcce-EEecCCCCCCCccCCCccccccccCCc
Q psy8225         119 VAAFINTNQRQHILIHSIKVAECKAIIYGAE-----LSEALTEVKDSIPGIS-LYAAGTRRKPQAKVLPSTTLLDEELPE  192 (479)
Q Consensus       119 ~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~-----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (479)
                      +++|+++.++.+++.++++.+++++++++..     ..+.+.......+..+ ++..+.....     .....+.+++..
T Consensus       100 ~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~  174 (547)
T PRK06087        100 VSVPLLPSWREAELVWVLNKCQAKMFFAPTLFKQTRPVDLILPLQNQLPQLQQIVGVDKLAPA-----TSSLSLSQIIAD  174 (547)
T ss_pred             EEeccchhcCHHHHHHHHHhcCCeEEEEecccccccHHHHHHHHHhhCCCCcEEEEeCCcCCC-----cCccCHHHHhcc
Confidence            9999999999999999999999999999753     2233333333333322 3332221110     011122333222


Q ss_pred             CCCCCCcccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcCCCCCCeEEEeccchhhhhhHHHHHHHH
Q psy8225         193 VSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCL  272 (479)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l  272 (479)
                      ......   ......+++++|+|||||||.||+|+++|.++..........+++..++++++.+|++|.+|+...++.++
T Consensus       175 ~~~~~~---~~~~~~~d~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l  251 (547)
T PRK06087        175 YEPLTT---AITTHGDELAAVLFTSGTEGLPKGVMLTHNNILASERAYCARLNLTWQDVFMMPAPLGHATGFLHGVTAPF  251 (547)
T ss_pred             CCcccC---CCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCCCCCCeEEEecchHHHHHHHHHHHHHH
Confidence            111111   12345688999999999999999999999999888777777778899999999999999999888888899


Q ss_pred             hcCceEEecCCCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEE--ecCCChhhHHHHHHHhCccee
Q psy8225         273 LGGSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRI  350 (479)
Q Consensus       273 ~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~--G~~l~~~~~~~~~~~~~~~~v  350 (479)
                      ..|+++++.+.+++..+++.+.+++++++..+|+.+..+++........++++|.++  |+++++++.+.+.+. +. ++
T Consensus       252 ~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~~~~~~~~~~~~~-~~-~l  329 (547)
T PRK06087        252 LIGARSVLLDIFTPDACLALLEQQRCTCMLGATPFIYDLLNLLEKQPADLSALRFFLCGGTTIPKKVARECQQR-GI-KL  329 (547)
T ss_pred             hcCCEEEecCCCCHHHHHHHHHHcCCCEEeccHHHHHHHHhccccCCCCCCCeEEEEEcCCCCCHHHHHHHHHc-CC-cE
Confidence            999999999999999999999999999999888877777766555555678999887  888999999887764 87 89


Q ss_pred             eeeccccccCcccccCC-----CCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCC
Q psy8225         351 CEFYGATEGNANLMNAD-----GKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESR  425 (479)
Q Consensus       351 ~~~YG~tE~~~~~~~~~-----~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~  425 (479)
                      ++.||+||++.......     ...+++|.|++      ++.++++|++ +.          +++.|+.|||+++    |
T Consensus       330 ~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~------~~~~~i~d~~-~~----------~~~~g~~Gel~v~----g  388 (547)
T PRK06087        330 LSVYGSTESSPHAVVNLDDPLSRFMHTDGYAAA------GVEIKVVDEA-RK----------TLPPGCEGEEASR----G  388 (547)
T ss_pred             EEEecccccCCccccCCCcchhhcCCcCCccCC------CceEEEEcCC-CC----------CCcCCCcceEEEe----c
Confidence            99999999986654321     12345666655      7888888844 44          5688999999998    7


Q ss_pred             cccccccccCcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         426 AESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       426 ~~~~~~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                      + .++.||+++++.+...+.     .+|||+|||+|++|++|++++.||.||++
T Consensus       389 ~-~~~~gy~~~~~~~~~~~~-----~~g~~~TGDl~~~~~~g~l~i~GR~~d~i  436 (547)
T PRK06087        389 P-NVFMGYLDEPELTARALD-----EEGWYYSGDLCRMDEAGYIKITGRKKDII  436 (547)
T ss_pred             c-cccccccCCHHHHHHHhC-----CCCCcCcCceEEECCCCCEEEEecchhhh
Confidence            7 899999999877766553     37899999999999999999999999874

>PRK06187 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=6.1e-52  Score=422.68  Aligned_cols=400  Identities=23%  Similarity=0.342  Sum_probs=333.8

Q ss_pred             ccchhHHHHHHHhhcCCCccccEEE---Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCcee
Q psy8225          45 LPTYARPLFVRTIREVPMTGAYKYT---VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVA  120 (479)
Q Consensus        45 ~~~~l~~~l~~~~~~~p~~~a~~~~---~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~  120 (479)
                      .+.++.++|.++++.+|+++|+.+.   +|| ||.++++++|+.|.+.|+++|++|+++++|++++++++|||+++|+++
T Consensus         4 ~~~~l~~~l~~~~~~~p~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~g~~~~~~V~l~~~~~~~~~~~~la~~~~G~~~   83 (521)
T PRK06187          4 YPLTIGRILRHGARKHPDKEAVYFDGRRTTYAELDERVNRLANALRALGVKKGDRVAVFDWNSHEYLEAYFAVPKIGAVL   83 (521)
T ss_pred             ccCCHHHHHHHHHHHCCCceEEEeCCceEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEE
Confidence            5678999999999999999999988   999 999999999999999999999999999999999999999999999999


Q ss_pred             eeecCCcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCCcce-EEecCCCCCCCccCCCccccccccCCcCCCCCCc
Q psy8225         121 AFINTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGIS-LYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPT  199 (479)
Q Consensus       121 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (479)
                      +|+++..+.+++.++++.+++++++++.+....+.++....+.++ ++..++... . ........+.+++........ 
T Consensus        84 v~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~-  160 (521)
T PRK06187         84 HPINIRLKPEEIAYILNDAEDRVVLVDSEFVPLLAAILPQLPTVRTVIVEGDGPA-A-PLAPEVGEYEELLAAASDTFD-  160 (521)
T ss_pred             EecccCCCHHHHHHHHHhcCCeEEEEcchHHHHHHHHhhccCCccEEEEecCccc-c-ccccccccHHHHhhcCCccCC-
Confidence            999999999999999999999999999888777777666665443 333332221 0 011223334444333222211 


Q ss_pred             ccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcCCCCCCeEEEeccchhhhhhHHHHHHHHhcCceEE
Q psy8225         200 EDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVV  279 (479)
Q Consensus       200 ~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G~~~v  279 (479)
                        ......+++++++|||||||.||+|.++|.++..........++++.++++++.+|++|.+++...+. ++..|++++
T Consensus       161 --~~~~~~~~~~~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~-~l~~G~~~v  237 (521)
T PRK06187        161 --FPDIDENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCAWLKLSRDDVYLVIVPMFHVHAWGLPYL-ALMAGAKQV  237 (521)
T ss_pred             --CCCCCccceEEEEECCCCCCCCceEEeehHHHHHHHHHHHHhhCCCCCCEEEEeCCchHHhhHHHHHH-HHHhCCEEE
Confidence              13456678999999999999999999999999988887777888999999999999999998765555 899999999


Q ss_pred             ecCCCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEE--ecCCChhhHHHHHHHhCcceeeeecccc
Q psy8225         280 IRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFYGAT  357 (479)
Q Consensus       280 ~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~--G~~l~~~~~~~~~~~~~~~~v~~~YG~t  357 (479)
                      +.+.+++..+++.++++++|.+.++|++++.|.+........++++|.++  |+++++++++++.+.++. ++++.||+|
T Consensus       238 ~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~l~~v~~~Ge~l~~~~~~~~~~~~~~-~v~~~YG~t  316 (521)
T PRK06187        238 IPRRFDPENLLDLIETERVTFFFAVPTIWQMLLKAPRAYFVDFSSLRLVIYGGAALPPALLREFKEKFGI-DLVQGYGMT  316 (521)
T ss_pred             ecCCCCHHHHHHHHHHhCCeEEEchHHHHHHHHcCcCCCccCcchhhEEEEcCcCCCHHHHHHHHHHhCc-chheeeccC
Confidence            99888999999999999999999999999999988876566788999877  899999999999999987 999999999


Q ss_pred             ccCcccccCCC---------CCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccC--CCCceEEEEeecCCc
Q psy8225         358 EGNANLMNADG---------KVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKA--EEPGILIGMIKESRA  426 (479)
Q Consensus       358 E~~~~~~~~~~---------~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~--~~~Gel~v~~~~~~~  426 (479)
                      |+++++.....         ..+++|.|++      ++.++++|++ +.          +++.  |+.|||+++    ++
T Consensus       317 E~~~~~~~~~~~~~~~~~~~~~~~~G~~~~------~~~~~i~~~~-~~----------~~~~~~g~~Gel~v~----~~  375 (521)
T PRK06187        317 ETSPVVSVLPPEDQLPGQWTKRRSAGRPLP------GVEARIVDDD-GD----------ELPPDGGEVGEIIVR----GP  375 (521)
T ss_pred             ccCcccccCCcccccccccccCCccccccC------CeEEEEECCC-CC----------CCCCCCCCeeEEEEE----Cc
Confidence            99876553321         3455666554      7899999965 44          3455  899999998    77


Q ss_pred             ccccccccCcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         427 ESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       427 ~~~~~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                       .++.||+++++.+.+.+.      ++||+|||+|++++||++++.||.||++
T Consensus       376 -~~~~~y~~~~~~~~~~~~------~~~~~tGD~~~~~~~g~~~~~GR~~~~i  421 (521)
T PRK06187        376 -WLMQGYWNRPEATAETID------GGWLHTGDVGYIDEDGYLYITDRIKDVI  421 (521)
T ss_pred             -chhhhhcCCHHHHHHHhh------CCceeccceEEEcCCCCEEEeecccceE
Confidence             899999998877776664      6799999999999999999999999874

>PRK06178 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.7e-52  Score=427.82  Aligned_cols=405  Identities=22%  Similarity=0.276  Sum_probs=317.8

Q ss_pred             chhHHHHHHHhhcCCCccccEEE---Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCceeee
Q psy8225          47 TYARPLFVRTIREVPMTGAYKYT---VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAF  122 (479)
Q Consensus        47 ~~l~~~l~~~~~~~p~~~a~~~~---~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~  122 (479)
                      .++.++|+++++.+|+++|+.+.   +|| ||.+++.++|++|.++|+++|++|+++++|+++++++++||+++|++++|
T Consensus        33 ~~l~~~l~~~a~~~p~~~al~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~  112 (567)
T PRK06178         33 RPLTEYLRAWARERPQRPAIIFYGHVITYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQFHIVFFGILKLGAVHVP  112 (567)
T ss_pred             ccHHHHHHHHHHHCCCceEEEECCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCcHHHHHHHHHHHhCeEEee
Confidence            56899999999999999999886   999 99999999999999999999999999999999999999999999999999


Q ss_pred             ecCCcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCCcceEEecCCCCCCCc----cCCCc-------cccccccCC
Q psy8225         123 INTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQA----KVLPS-------TTLLDEELP  191 (479)
Q Consensus       123 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-------~~~~~~~~~  191 (479)
                      ++|..+.+++.+++++++++++++++...+.+.+.........+++.........    .....       ...+.++..
T Consensus       113 l~p~~~~~~~~~~l~~~~~~~ii~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (567)
T PRK06178        113 VSPLFREHELSYELNDAGAEVLLALDQLAPVVEQVRAETSLRHVIVTSLADVLPAEPTLPLPDSLRAPRLAAAGAIDLLP  192 (567)
T ss_pred             cCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHhhccCCcceEEEeccccccccccccccccccccccccccccccHHH
Confidence            9999999999999999999999999887776665544332122222211110000    00000       000111111


Q ss_pred             cCCCCCCcccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhh-hcCCCCCCeEEEeccchhhhhhHHHHHH
Q psy8225         192 EVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRY-QTGLTSDDVVYTTLPLYHTAGGLLGIGQ  270 (479)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~-~~~~~~~d~~~~~~pl~h~~g~~~~~~~  270 (479)
                      ................+++++++|||||||.||+|++||.++...+..... ......++++++.+|++|.+|+...++.
T Consensus       193 ~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~  272 (567)
T PRK06178        193 ALRACTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVYTAAAAYAVAVVGGEDSVFLSFLPEFWIAGENFGLLF  272 (567)
T ss_pred             HhhccccccccCCCCCCCeEEEEeCCCCCCCCceEEeccHHHHHHHHHHHHHhccCCCCcEEEEecchHHHHHHHHHHHH
Confidence            110000000012345789999999999999999999999998876554332 3567889999999999999998777888


Q ss_pred             HHhcCceEEecCCCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEE----ecCCChhhHHHHHHHhC
Q psy8225         271 CLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI----GNGLRPQVWEPFQKRFG  346 (479)
Q Consensus       271 ~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~----G~~l~~~~~~~~~~~~~  346 (479)
                      ++..|+++++.+++++..+++.++++++|.+..+|..+..+..........+++++.+.    |+.+++++.+.|++.+|
T Consensus       273 ~l~~G~~~~l~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g  352 (567)
T PRK06178        273 PLFSGATLVLLARWDAVAFMAAVERYRVTRTVMLVDNAVELMDHPRFAEYDLSSLRQVRVVSFVKKLNPDYRQRWRALTG  352 (567)
T ss_pred             HHHcCceEEEeCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCCCCCCCcchheeeeeccccccCCHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999988876554445567777653    57899999999999999


Q ss_pred             cceee-eeccccccCccccc-C---------CCCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCc
Q psy8225         347 LDRIC-EFYGATEGNANLMN-A---------DGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPG  415 (479)
Q Consensus       347 ~~~v~-~~YG~tE~~~~~~~-~---------~~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~G  415 (479)
                      . .++ +.||+||++..+.. .         ...++++|.|+|      +++++++|+++++          +|+.|+.|
T Consensus       353 ~-~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~------g~~v~v~d~~~~~----------~~~~g~~G  415 (567)
T PRK06178        353 S-VLAEAAWGMTETHTCDTFTAGFQDDDFDLLSQPVFVGLPVP------GTEFKICDFETGE----------LLPLGAEG  415 (567)
T ss_pred             C-cccccccccccccccceeccccccCccccccCCcccccccC------CcEEEEEcCCCCC----------cCCCCCce
Confidence            8 555 57999998754321 1         123345666554      8999999977776          56889999


Q ss_pred             eEEEEeecCCcccccccccCcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         416 ILIGMIKESRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       416 el~v~~~~~~~~~~~~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                      ||+++    |+ +++.||+++++.+...++      +|||+|||+|++++||+++++||+||++
T Consensus       416 el~v~----g~-~v~~gY~~~~~~~~~~~~------dg~~~TGDl~~~~~~g~l~i~GR~~d~i  468 (567)
T PRK06178        416 EIVVR----TP-SLLKGYWNKPEATAEALR------DGWLHTGDIGKIDEQGFLHYLGRRKEML  468 (567)
T ss_pred             EEEEE----CC-cccccccCChhhhhhccc------CCceeecceEEEecCCeEEEEecccccE
Confidence            99998    77 899999999887776554      7899999999999999999999999974

>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=3.9e-52  Score=419.88  Aligned_cols=374  Identities=23%  Similarity=0.324  Sum_probs=310.0

Q ss_pred             chhHHHHHHHhhcCCCccccEEE---Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCceeee
Q psy8225          47 TYARPLFVRTIREVPMTGAYKYT---VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAF  122 (479)
Q Consensus        47 ~~l~~~l~~~~~~~p~~~a~~~~---~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~  122 (479)
                      .++.++|.+++..+|+++|+++.   +|| ||.++++++|+.|.+.|+++||+|+++++|++++++++|||+++|++++|
T Consensus         2 ~~~~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~   81 (483)
T PRK03640          2 ETMPNWLKQRAFLTPDRTAIEFEEKKVTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHALQQLGAVAVL   81 (483)
T ss_pred             CcHHHHHHHHHHhCCCceEEEeCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhCCcEEEe
Confidence            35789999999999999999987   999 99999999999999999999999999999999999999999999999999


Q ss_pred             ecCCcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCCcceEEecCCCCCCCccCCCccccccccCCcCCCCCCcccc
Q psy8225         123 INTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTEDI  202 (479)
Q Consensus       123 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (479)
                      +++..+.+++.++++.++++++++++...........    .                    .++++.........  ..
T Consensus        82 i~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~----~--------------------~~~~~~~~~~~~~~--~~  135 (483)
T PRK03640         82 LNTRLSREELLWQLDDAEVKCLITDDDFEAKLIPGIS----V--------------------KFAELMNGPKEEAE--IQ  135 (483)
T ss_pred             cCcCCCHHHHHHHHHhCCCCEEEEcchhhHHHhhhcc----c--------------------cHHHHhhcccccCC--CC
Confidence            9999999999999999999999998765443222100    0                    01111111100000  01


Q ss_pred             cCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcCCCCCCeEEEeccchhhhhhHHHHHHHHhcCceEEecC
Q psy8225         203 KKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRS  282 (479)
Q Consensus       203 ~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G~~~v~~~  282 (479)
                      .....+++++++|||||||.||+|+++|.++...+......++++.+|++++.+|++|.+|+ ..++.++..|+++++.+
T Consensus       136 ~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~-~~~~~~l~~G~~~~~~~  214 (483)
T PRK03640        136 EEFDLDEVATIMYTSGTTGKPKGVIQTYGNHWWSAVGSALNLGLTEDDCWLAAVPIFHISGL-SILMRSVIYGMRVVLVE  214 (483)
T ss_pred             CCCCCCCeEEEEeCCCcCCCCcEEEEecHHHHHHHHHHHHhcCCCcCcEEEEecCHHHHHHH-HHHHHHHhcCCEEEecC
Confidence            23456889999999999999999999999998877766667889999999999999999986 44677889999999999


Q ss_pred             CCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEE--ecCCChhhHHHHHHHhCcceeeeeccccccC
Q psy8225         283 KFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFYGATEGN  360 (479)
Q Consensus       283 ~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~--G~~l~~~~~~~~~~~~~~~~v~~~YG~tE~~  360 (479)
                      .+++..+++.++++++|++.++|+++..|.+..... ....++|.++  |+++++++++.+++ ++. ++++.||+||++
T Consensus       215 ~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~-~~~~~lr~~~~~g~~~~~~~~~~~~~-~~~-~~~~~YG~tE~~  291 (483)
T PRK03640        215 KFDAEKINKLLQTGGVTIISVVSTMLQRLLERLGEG-TYPSSFRCMLLGGGPAPKPLLEQCKE-KGI-PVYQSYGMTETA  291 (483)
T ss_pred             CCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCcc-ccCCcceEEEEcCCCCCHHHHHHHHH-hCC-CeeeeeccCccc
Confidence            999999999999999999999999999998664432 2346888877  88999999988876 487 899999999987


Q ss_pred             cccccC-----CCCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCcccccccccC
Q psy8225         361 ANLMNA-----DGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNGYAD  435 (479)
Q Consensus       361 ~~~~~~-----~~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~gY~~  435 (479)
                      ..+...     ...++++|+|++      ++++++.|+.  +          +++.|+.|||+++    || +++.||++
T Consensus       292 ~~~~~~~~~~~~~~~~~vG~p~~------~~~~~i~~~~--~----------~~~~g~~Gel~v~----g~-~~~~gy~~  348 (483)
T PRK03640        292 SQIVTLSPEDALTKLGSAGKPLF------PCELKIEKDG--V----------VVPPFEEGEIVVK----GP-NVTKGYLN  348 (483)
T ss_pred             ccccccCcccccccCCCcccccC------CcEEEEecCC--C----------cCCCCCceEEEEE----Cc-chhhhhcC
Confidence            654321     234577777665      7888887742  3          5788999999998    88 99999999


Q ss_pred             cchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         436 KKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       436 ~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                      +++.+...+.      +|||+|||++++++||++++.||+||++
T Consensus       349 ~~~~~~~~~~------~~~~~tGDl~~~~~~g~l~~~GR~~~~i  386 (483)
T PRK03640        349 REDATRETFQ------DGWFKTGDIGYLDEEGFLYVLDRRSDLI  386 (483)
T ss_pred             CHHHHHHHHh------cCCeeccceEEEcCCCCEEEeecccCeE
Confidence            9887776654      7899999999999999999999999974

>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated

Probab=100.00  E-value=7.5e-52  Score=421.28  Aligned_cols=403  Identities=19%  Similarity=0.225  Sum_probs=323.2

Q ss_pred             hhHHHHHHHhhcCCCccccEEE---Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCceeeee
Q psy8225          48 YARPLFVRTIREVPMTGAYKYT---VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFI  123 (479)
Q Consensus        48 ~l~~~l~~~~~~~p~~~a~~~~---~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~l  123 (479)
                      ++.++|++.++.+|+++|+.+.   +|| ||.+++.++|+.|++.|+++||+|+++++|++++++++|||+++|++++|+
T Consensus         1 ~~~~~~~~~~~~~p~~~a~~~~~~~~ty~~l~~~v~~~a~~l~~~g~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l   80 (515)
T TIGR03098         1 LLHHLLEDAAARLPDATALVHHDRTLTYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAALAGGVFVPI   80 (515)
T ss_pred             CHHHHHHHHHHHCCCCeEEEECCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCEEEEeC
Confidence            3678999999999999999987   999 999999999999999999999999999999999999999999999999999


Q ss_pred             cCCcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCCcc-eEEecCCCCCCCccCCCccccccccCCcCCCCCCcccc
Q psy8225         124 NTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGI-SLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTEDI  202 (479)
Q Consensus       124 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (479)
                      ++.++.+++.++++.++++++|++......+......++.. .++.+++..... ........|+++.......    ..
T Consensus        81 ~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----~~  155 (515)
T TIGR03098        81 NPLLKAEQVAHILADCNVRLLVTSSERLDLLHPALPGCHDLRTLILVGEPAHAS-EGGGESPSWPKLLALGDAD----PP  155 (515)
T ss_pred             CCCCCHHHHHHHHHcCCCeEEEEccchhhhhHhhhhcccccceEEEecCccccc-CCccccccHHHhhcccccc----cc
Confidence            99999999999999999999999887665554444443332 233333221100 0011122344443322111    11


Q ss_pred             cCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcCCCCCCeEEEeccchhhhhhHHHHHHHHhcCceEEecC
Q psy8225         203 KKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRS  282 (479)
Q Consensus       203 ~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G~~~v~~~  282 (479)
                      .....+++++++|||||||.||+|.+||.++...+......+.+..+|++++.+|++|.+|+ ..++.++..|+++++.+
T Consensus       156 ~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~~~~~  234 (515)
T TIGR03098       156 HPVIDSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQSVATYLENRPDDRLLAVLPLSFDYGF-NQLTTAFYVGATVVLHD  234 (515)
T ss_pred             CCCCcCCeEEEEECCCCCCCCceEEEecHHHHHHHHHHHHHhCCCcccEEEEECchhhHhHH-HHHHHHHHcCCEEEEcC
Confidence            23356789999999999999999999999999888877777788999999999999999987 46788999999999998


Q ss_pred             CCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEE--ecCCChhhHHHHHHHhCcceeeeeccccccC
Q psy8225         283 KFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFYGATEGN  360 (479)
Q Consensus       283 ~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~--G~~l~~~~~~~~~~~~~~~~v~~~YG~tE~~  360 (479)
                      .+++..+++.++++++|++.++|+++..|.+..... ..++++|.++  |+++++++.+++++.++...+++.||+||++
T Consensus       235 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~-~~~~~l~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~  313 (515)
T TIGR03098       235 YLLPRDVLKALEKHGITGLAAVPPLWAQLAQLDWPE-SAAPSLRYLTNSGGAMPRATLSRLRSFLPNARLFLMYGLTEAF  313 (515)
T ss_pred             CCCHHHHHHHHHHcCCceEecChHHHHHHHhcccCC-CCccceEEEEecCCcCCHHHHHHHHHHCCCCeEeeeecccccc
Confidence            899999999999999999999999999988753322 3567888876  8899999999999999544899999999987


Q ss_pred             cccccC----CCCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCcccccccccCc
Q psy8225         361 ANLMNA----DGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNGYADK  436 (479)
Q Consensus       361 ~~~~~~----~~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~gY~~~  436 (479)
                      ......    ..+++++|+|++      ++.++++|++ +.          +++.|+.|||+++    |+ .++.||+++
T Consensus       314 ~~~~~~~~~~~~~~~~vG~~~~------~~~~~i~~~~-~~----------~~~~~~~Gel~v~----g~-~~~~gy~~~  371 (515)
T TIGR03098       314 RSTYLPPEEVDRRPDSIGKAIP------NAEVLVLRED-GS----------ECAPGEEGELVHR----GA-LVAMGYWND  371 (515)
T ss_pred             ceEecccccccCCCCCcceecC------CCEEEEECCC-CC----------CCCCCCceEEEEc----Cc-hhhccccCC
Confidence            544322    235567787665      7899988854 54          5678899999998    77 899999998


Q ss_pred             chhHHHHHhhh------ccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         437 KASEKKILRNV------YSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       437 ~~~~~~~~~~~------~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                      +..+...+.+.      +..+++||+|||+|++|+||++++.||.||++
T Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i  420 (515)
T TIGR03098       372 PEKTAERFRPLPPRPGELHLPELAVWSGDTVRRDEEGFLYFVGRRDEMI  420 (515)
T ss_pred             chhhhhhhhccCCccccccccccceeccceEEEcCCceEEEEeccccce
Confidence            87766555421      11124699999999999999999999999975

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present.

>PRK06060 acyl-CoA synthetase; Validated

Probab=100.00  E-value=8.7e-53  Score=441.87  Aligned_cols=375  Identities=20%  Similarity=0.227  Sum_probs=304.1

Q ss_pred             hhHHHHHHHhhc--CCCccccEEE--Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCceeee
Q psy8225          48 YARPLFVRTIRE--VPMTGAYKYT--VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAF  122 (479)
Q Consensus        48 ~l~~~l~~~~~~--~p~~~a~~~~--~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~  122 (479)
                      ++.++|.+++..  +|+++|+++.  +|| ||.++++++|+.|.+.|+++||+|+++++|++++++++|||+++|++++|
T Consensus         5 ~~~~~~~~~a~~~~~pd~~a~~~~~~~Ty~eL~~~~~~lA~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~aG~~~vp   84 (705)
T PRK06060          5 NLAGLLAEQASEAGWYDRPAFYAADVVTHGQIHDGAARLGEVLRNRGLSSGDRVLLCLPDSPDLVQLLLACLARGVMAFL   84 (705)
T ss_pred             CHHHHHHHHHhhccCCCceEEEecCceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCcEEEe
Confidence            478889988886  7999999876  999 99999999999999999999999999999999999999999999999999


Q ss_pred             ecCCcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCCcceEEecCCCCCCCccCCCccccccccCCcCCCCCCcccc
Q psy8225         123 INTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTEDI  202 (479)
Q Consensus       123 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (479)
                      ++|.++.+++.+++++++++++|++......+...       .+..                 ....+.......+. ..
T Consensus        85 i~p~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~-------~~~~-----------------~~~~~~~~~~~~~~-~~  139 (705)
T PRK06060         85 ANPELHRDDHALAARNTEPALVVTSDALRDRFQPS-------RVAE-----------------AAELMSEAARVAPG-GY  139 (705)
T ss_pred             cCCCCCHHHHHHHHhcCCCcEEEEchHHhhhhccc-------ccch-----------------hhhhhhhccccCCC-CC
Confidence            99999999999999999999999987544322110       0000                 00000000000000 00


Q ss_pred             cCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhh-hhcCCCCCCeEEEeccchhhhhhHHHHHHHHhcCceEEec
Q psy8225         203 KKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGR-YQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIR  281 (479)
Q Consensus       203 ~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~-~~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G~~~v~~  281 (479)
                      ....++++++++|||||||.||||+++|+++...+.... ..+++..++++++..|++|.+++...++.++..|+++++.
T Consensus       140 ~~~~~~~~a~il~TSGSTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~l~~G~~~v~~  219 (705)
T PRK06060        140 EPMGGDALAYATYTSGTTGPPKAAIHRHADPLTFVDAMCRKALRLTPEDTGLCSARMYFAYGLGNSVWFPLATGGSAVIN  219 (705)
T ss_pred             CCCCCCCeEEEEECCCCCCCCcEEEEccccHHHHHHHHHHHhhCCCCcceeEEeccchhhcchhHHHHHHHhcCCEEEEe
Confidence            223467899999999999999999999999987766553 4567888999999999999988767778889999999987


Q ss_pred             C-CCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEE--ecCCChhhHHHHHHHhCcceeeeeccccc
Q psy8225         282 S-KFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFYGATE  358 (479)
Q Consensus       282 ~-~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~--G~~l~~~~~~~~~~~~~~~~v~~~YG~tE  358 (479)
                      + .+++..++..+.++++|+++++|+++..+.+....  ..++++|.++  |+++++++.+++.+.++..++++.||+||
T Consensus       220 ~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~--~~~~slr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~YG~tE  297 (705)
T PRK06060        220 SAPVTPEAAAILSARFGPSVLYGVPNFFARVIDSCSP--DSFRSLRCVVSAGEALELGLAERLMEFFGGIPILDGIGSTE  297 (705)
T ss_pred             CCCCCHHHHHHHHHhcCCeEEeeHHHHHHHHHHhccc--ccccceeEEEEecCcCCHHHHHHHHHHcCCCceEeeeeccc
Confidence            6 57888899999999999999999999998875432  3467899876  89999999999999996448999999999


Q ss_pred             cCcccccC---CCCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCcccccccccC
Q psy8225         359 GNANLMNA---DGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNGYAD  435 (479)
Q Consensus       359 ~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~gY~~  435 (479)
                      ++......   ..+++++|+|++      +++++++|++ ++          +++.|+.|||+++    |+ +++.||+|
T Consensus       298 ~~~~~~~~~~~~~~~~~iG~p~~------~~~v~i~d~~-g~----------~~~~g~~GEl~i~----g~-~v~~GY~~  355 (705)
T PRK06060        298 VGQTFVSNRVDEWRLGTLGRVLP------PYEIRVVAPD-GT----------TAGPGVEGDLWVR----GP-AIAKGYWN  355 (705)
T ss_pred             cCceEEeccCCCCCcCcccccCC------CcEEEEECCC-CC----------CCCCCCceEEEEc----cc-hhhhhhhC
Confidence            98554322   234566777665      7899999865 44          5688999999998    77 89999999


Q ss_pred             cchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         436 KKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       436 ~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                      +++.+.        .++|||+|||+|++|+||+++++||+||++
T Consensus       356 ~~~~~~--------~~~~~~~TGDl~~~~~dG~l~~~GR~dd~i  391 (705)
T PRK06060        356 RPDSPV--------ANEGWLDTRDRVCIDSDGWVTYRCRADDTE  391 (705)
T ss_pred             CCcccc--------cCCCcEECCeeEEECCCceEEEecccCceE
Confidence            876431        137999999999999999999999999974

>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

Probab=100.00  E-value=5.4e-53  Score=443.70  Aligned_cols=397  Identities=18%  Similarity=0.199  Sum_probs=303.5

Q ss_pred             cchhHHHHHHHhhcCCC-ccccEE---E-Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCce
Q psy8225          46 PTYARPLFVRTIREVPM-TGAYKY---T-VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVV  119 (479)
Q Consensus        46 ~~~l~~~l~~~~~~~p~-~~a~~~---~-~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~  119 (479)
                      ..++.++|.++++++|+ ++|+.+   . +|| ||.++++++|++|.+. +++||+|+++++|++++++++|||+++|++
T Consensus       203 ~~t~~~~l~~~~~~~p~~~~a~~~~~~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~Val~~~n~~e~~~~~lA~~~~G~v  281 (718)
T PRK08043        203 RETLYEALLSAQYRYGAGKPCIEDVNFTPDSYRKLLKKTLFVGRILEKY-SVEGERIGLMLPNATISAAVIFGASLRRRI  281 (718)
T ss_pred             CCCHHHHHHHHHHHhCCCCcceEcCCCCcccHHHHHHHHHHHHHHHHHh-cCCCceEEEEcCCcHHHHHHHHHHHHcCCc
Confidence            37789999999999998 588865   2 999 9999999999999987 599999999999999999999999999999


Q ss_pred             eeeecCCcchHHHHHHHHhccceEEEeChhhHHHHH--HhhccCCcceEEecCCCCCCCccCCCccccccccCCcCCCCC
Q psy8225         120 AAFINTNQRQHILIHSIKVAECKAIIYGAELSEALT--EVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKS  197 (479)
Q Consensus       120 ~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (479)
                      ++|+++.++.+++.+++++++++++|++.+..+...  ......+...++...+.... ...........+...  . . 
T Consensus       282 ~vpl~~~~~~~~l~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~--~-~-  356 (718)
T PRK08043        282 PAMMNYTAGVKGLTSAITAAEIKTIFTSRQFLDKGKLWHLPEQLTQVRWVYLEDLKDD-VTTADKLWIFAHLLM--P-R-  356 (718)
T ss_pred             ccccccCcCHHHHHHHHHHcCCcEEEEcHHHHhhccCCChhhhhccccEEEhhhhhhh-cchhHHHHHHHHHhC--C-c-
Confidence            999999999999999999999999999876543211  11111122223322211000 000000000000000  0 0 


Q ss_pred             CcccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcCCCCCCeEEEeccchhhhhhHHHHHHHHhcCce
Q psy8225         198 PTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGST  277 (479)
Q Consensus       198 ~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G~~  277 (479)
                      ..  .....++++++++|||||||.||||++||+++...+......+++..+|++++.+|++|.+|+...++.++..|++
T Consensus       357 ~~--~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~Pl~h~~g~~~~~~~~l~~G~~  434 (718)
T PRK08043        357 LA--QVKQQPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIADFTPNDRFMSALPLFHSFGLTVGLFTPLLTGAE  434 (718)
T ss_pred             cc--cCCCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhhCCCccCeEEEcCcchhhhhhHHHHHHHHHcCCE
Confidence            00  0233568999999999999999999999999998887777777889999999999999999987778889999999


Q ss_pred             EEecCC-CChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEE--ecCCChhhHHHHHHHhCcceeeeec
Q psy8225         278 VVIRSK-FSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFY  354 (479)
Q Consensus       278 ~v~~~~-~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~--G~~l~~~~~~~~~~~~~~~~v~~~Y  354 (479)
                      +++.+. +++..+++.+.++++|++..+|+++..+.+..  ...++++||.++  |+++++++.+.|++.+|. ++++.|
T Consensus       435 vv~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~--~~~~~~~lr~i~~gg~~l~~~~~~~~~~~~g~-~l~~~Y  511 (718)
T PRK08043        435 VFLYPSPLHYRIVPELVYDRNCTVLFGTSTFLGNYARFA--NPYDFARLRYVVAGAEKLQESTKQLWQDKFGL-RILEGY  511 (718)
T ss_pred             EEEeCCcccHHHHHHHHHhcCCeEEEchHHHHHHhhhhc--CcccccceEEEEEeCccCCHHHHHHHHHHcCC-Ceeccc
Confidence            998764 57778889999999999999999998876642  223578899877  789999999999999998 899999


Q ss_pred             cccccCcccccC---CCCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCcccccc
Q psy8225         355 GATEGNANLMNA---DGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFN  431 (479)
Q Consensus       355 G~tE~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~  431 (479)
                      |+||+++.+...   ..+++++|+|+|      +++++++|++.               .++.|||+++    |+ +++.
T Consensus       512 G~TE~~~~~~~~~~~~~~~~svG~p~p------g~~~~i~d~~~---------------~~~~Gel~v~----g~-~v~~  565 (718)
T PRK08043        512 GVTECAPVVSINVPMAAKPGTVGRILP------GMDARLLSVPG---------------IEQGGRLQLK----GP-NIMN  565 (718)
T ss_pred             CcccccceEEecCCcccCCCCCCCcCC------CCeeEEecCCC---------------CCCceEEEEe----cC-Cccc
Confidence            999998655421   245677887765      78888887541               2356999998    88 9999


Q ss_pred             cccCc--chhHH-HHHhhh-ccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         432 GYADK--KASEK-KILRNV-YSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       432 gY~~~--~~~~~-~~~~~~-~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                      |||+.  ++.+. ....+. -...+|||+|||+|++|+||+++++||+||++
T Consensus       566 GY~~~e~~~~~~~~~~~~~~~~~~~gw~~TGDlg~~d~dG~l~i~GR~~d~I  617 (718)
T PRK08043        566 GYLRVEKPGVLEVPTAENARGEMERGWYDTGDIVRFDEQGFVQIQGRAKRFA  617 (718)
T ss_pred             cccCCCCcccccccccccccccccCCeEecCCEEEEcCCCcEEEEecCCCee
Confidence            99983  33110 000000 00126899999999999999999999999985

>PRK06145 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.1e-51  Score=418.14  Aligned_cols=386  Identities=20%  Similarity=0.221  Sum_probs=315.5

Q ss_pred             hhHHHHHHHhhcCCCccccEEE---Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCceeeee
Q psy8225          48 YARPLFVRTIREVPMTGAYKYT---VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFI  123 (479)
Q Consensus        48 ~l~~~l~~~~~~~p~~~a~~~~---~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~l  123 (479)
                      ++.++|.++++.+|+++|+++.   +|| ||.+++.++|..|.+.|++++++|+++++|+++++++++||+++|++++|+
T Consensus         3 ~~~~~~~~~~~~~~~~~a~~~~~~~~ty~el~~~v~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~l   82 (497)
T PRK06145          3 NLSASIAFHARRTPDRAALVYRDQEISYAEFHQRILQAAGMLHARGIGQGDVVALLMKNSAAFLELAFAASYLGAVFLPI   82 (497)
T ss_pred             cHHHHHHHHHHHCCCceEEEECCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEEec
Confidence            4679999999999999999887   999 999999999999999999999999999999999999999999999999999


Q ss_pred             cCCcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCCcceEEecCCCCCCCccCCCccccccccCCcCCCCCCccccc
Q psy8225         124 NTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTEDIK  203 (479)
Q Consensus       124 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (479)
                      ++..+.+++.++++.+++++++++.+.......    . . ..+..+....         ..+..+...... ...  ..
T Consensus        83 ~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~----~-~-~~~~~~~~~~---------~~~~~~~~~~~~-~~~--~~  144 (497)
T PRK06145         83 NYRLAADEVAYILGDAGAKLLLVDEEFDAIVAL----E-T-PKIVIDAAAQ---------ADSRRLAQGGLE-IPP--QA  144 (497)
T ss_pred             ccccCHHHHHHHHHhcCCcEEEEccchhhhhhc----c-c-ceEEecCccc---------chhHHHhccCCC-CCC--CC
Confidence            999999999999999999999998765432210    0 1 1111111000         000000000000 000  12


Q ss_pred             CCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcCCCCCCeEEEeccchhhhhhHHHHHHHHhcCceEEecCC
Q psy8225         204 KNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSK  283 (479)
Q Consensus       204 ~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~  283 (479)
                      ...++++++++|||||||.||+|+++|+++...+......+++..+++++...|++|.+++....+..+..|+++++.+.
T Consensus       145 ~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~  224 (497)
T PRK06145        145 AVAPTDLVRLMYTSGTTDRPKGVMHSYGNLHWKSIDHVIALGLTASERLLVVGPLYHVGAFDLPGIAVLWVGGTLRIHRE  224 (497)
T ss_pred             CCCccceEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhhCCCCCcEEEEecCchhHhHHHHHHHHHHhccCEEEECCc
Confidence            34668899999999999999999999999987666666667889999999999999999887766778899999999998


Q ss_pred             CChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEE--ecCCChhhHHHHHHHhCcceeeeeccccccCc
Q psy8225         284 FSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFYGATEGNA  361 (479)
Q Consensus       284 ~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~--G~~l~~~~~~~~~~~~~~~~v~~~YG~tE~~~  361 (479)
                      +++..+++.++++++|.+.++|++++.++.........++++|.++  |+++++++++++.+.|+...+++.||+||++.
T Consensus       225 ~~~~~~~~~i~~~~~t~~~~~P~~~~~ll~~~~~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~  304 (497)
T PRK06145        225 FDPEAVLAAIERHRLTCAWMAPVMLSRVLTVPDRDRFDLDSLAWCIGGGEKTPESRIRDFTRVFTRARYIDAYGLTETCS  304 (497)
T ss_pred             CCHHHHHHHHHHhCCeEEEehHHHHHHHHcCCCccccccccceEEEecCCCCCHHHHHHHHHHcCCCceEEeecCcccCC
Confidence            9999999999999999999999999999887665555678899877  88899999999999997658999999999986


Q ss_pred             ccccC-----CCCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCcccccccccCc
Q psy8225         362 NLMNA-----DGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNGYADK  436 (479)
Q Consensus       362 ~~~~~-----~~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~gY~~~  436 (479)
                      .+...     ...++++|+|++      +++++++|++ +.          +++.|+.|||+++    |+ +++.||+++
T Consensus       305 ~~~~~~~~~~~~~~~~~G~~~~------~~~~~i~~~~-~~----------~~~~~~~Gel~v~----g~-~~~~Gy~~~  362 (497)
T PRK06145        305 GDTLMEAGREIEKIGSTGRALA------HVEIRIADGA-GR----------WLPPNMKGEICMR----GP-KVTKGYWKD  362 (497)
T ss_pred             cceeccCccccccCCCcccCCC------CceEEEECCC-CC----------CCCCCCceEEEEE----Cc-chhhhhcCC
Confidence            54321     124566777665      7899988854 44          4578899999998    77 899999999


Q ss_pred             chhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         437 KASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       437 ~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                      +..+.+.+.      ++||+|||+|++|+||+++++||+||++
T Consensus       363 ~~~~~~~~~------~~~~~TGDl~~~~~~g~l~~~GR~~~~i  399 (497)
T PRK06145        363 PEKTAEAFY------GDWFRSGDVGYLDEEGFLYLTDRKKDMI  399 (497)
T ss_pred             hHHHHHHHh------CCCeeccceEEEcCCCcEEEeccccceE
Confidence            887776654      7899999999999999999999999975

>PRK12583 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.1e-51  Score=424.07  Aligned_cols=400  Identities=22%  Similarity=0.273  Sum_probs=320.9

Q ss_pred             chhHHHHHHHhhcCCCccccEEE-----Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCcee
Q psy8225          47 TYARPLFVRTIREVPMTGAYKYT-----VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVA  120 (479)
Q Consensus        47 ~~l~~~l~~~~~~~p~~~a~~~~-----~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~  120 (479)
                      .++.++|.+.++++|+++|+++.     +|| ||.++++++|..|.+.|+++||+|+++++|++++++++|||+++|+++
T Consensus        18 ~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~~a~~~~G~~~   97 (558)
T PRK12583         18 QTIGDAFDATVARFPDREALVVRHQALRYTWRQLADAVDRLARGLLALGVQPGDRVGIWAPNCAEWLLTQFATARIGAIL   97 (558)
T ss_pred             CcHHHHHHHHHHHCCCCeEEEecCCCcEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHHHhhCCEE
Confidence            46899999999999999999874     999 999999999999999999999999999999999999999999999999


Q ss_pred             eeecCCcchHHHHHHHHhccceEEEeChhhH-----HHHHHhhcc-------------CCcce-EEecCCCCCCCccCCC
Q psy8225         121 AFINTNQRQHILIHSIKVAECKAIIYGAELS-----EALTEVKDS-------------IPGIS-LYAAGTRRKPQAKVLP  181 (479)
Q Consensus       121 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~-------------~~~~~-~~~~~~~~~~~~~~~~  181 (479)
                      +++++..+.+++.++++.++++++|++....     ..+.+....             .+.+. ++.......      .
T Consensus        98 v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~  171 (558)
T PRK12583         98 VNINPAYRASELEYALGQSGVRWVICADAFKTSDYHAMLQELLPGLAEGQPGALACERLPELRGVVSLAPAPP------P  171 (558)
T ss_pred             EecCCCCCHHHHHHHHHhcCCcEEEEeccccccchhHHHHHHhhhhccccccccccccCCcceEEEEecCCCC------c
Confidence            9999999999999999999999999975321     122221111             11111 111111110      1


Q ss_pred             ccccccccCCcCCCC---CCcccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcCCCCCCeEEEeccc
Q psy8225         182 STTLLDEELPEVSAK---SPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPL  258 (479)
Q Consensus       182 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~pl  258 (479)
                      ....|++........   ..........++++++++|||||||.||+|.++|+++...+......+++..+|++++.+|+
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~p~  251 (558)
T PRK12583        172 GFLAWHELQARGETVSREALAERQASLDRDDPINIQYTSGTTGFPKGATLSHHNILNNGYFVAESLGLTEHDRLCVPVPL  251 (558)
T ss_pred             cccchHhhhhcccccccccccccccccCCCCcEEEEECCCCCCCCceEEeeHHHHHHHHHHHHHHhCCCCCCeEEEecCc
Confidence            112232222211110   00000123456789999999999999999999999999888877777889999999999999


Q ss_pred             hhhhhhHHHHHHHHhcCceEEecC-CCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEE--ecCCCh
Q psy8225         259 YHTAGGLLGIGQCLLGGSTVVIRS-KFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRP  335 (479)
Q Consensus       259 ~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~--G~~l~~  335 (479)
                      +|.+|.+..++.++..|+++++.. .+++..+++.++++++|++.++|+++..++.........++++|.++  |+++++
T Consensus       252 ~~~~g~~~~~~~~l~~g~~v~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~lr~i~~~G~~~~~  331 (558)
T PRK12583        252 YHCFGMVLANLGCMTVGACLVYPNEAFDPLATLQAVEEERCTALYGVPTMFIAELDHPQRGNFDLSSLRTGIMAGAPCPI  331 (558)
T ss_pred             hhhhhHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHccccccCCCchhheEEEecCCCCCH
Confidence            999999888899999999998654 57899999999999999999999999888877655555678999866  899999


Q ss_pred             hhHHHHHHHhCcceeeeeccccccCcccccCC------CCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccc
Q psy8225         336 QVWEPFQKRFGLDRICEFYGATEGNANLMNAD------GKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPC  409 (479)
Q Consensus       336 ~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~------~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~  409 (479)
                      ++.+++.+.++...+++.||+||++.+.....      .+++++|+|.+      ++.+.++|++ ++          ++
T Consensus       332 ~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~------~~~~~i~d~~-~~----------~~  394 (558)
T PRK12583        332 EVMRRVMDEMHMAEVQIAYGMTETSPVSLQTTAADDLERRVETVGRTQP------HLEVKVVDPD-GA----------TV  394 (558)
T ss_pred             HHHHHHHHHcCCcceeccccccccccceeccCcccccccccCCCCccCC------CCeEEEECCC-CC----------CC
Confidence            99999999998767999999999987654322      23456677655      7899999976 55          57


Q ss_pred             cCCCCceEEEEeecCCcccccccccCcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         410 KAEEPGILIGMIKESRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       410 ~~~~~Gel~v~~~~~~~~~~~~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                      +.|+.|||+++    |+ .++.||++++..+.+.+.     .++||+|||+|++|+||++++.||.||++
T Consensus       395 ~~g~~Gel~v~----g~-~~~~gy~~~~~~~~~~~~-----~~~~~~TGDl~~~~~dg~l~i~GR~~~~i  454 (558)
T PRK12583        395 PRGEIGELCTR----GY-SVMKGYWNNPEATAESID-----EDGWMHTGDLATMDEQGYVRIVGRSKDMI  454 (558)
T ss_pred             CCCCeeEEEEE----eC-ccchhhcCChHHHHhhcC-----CCCCeeccceEEECCCccEEEEeccccee
Confidence            88999999998    67 899999999887766542     37899999999999999999999999974

>PRK07470 acyl-CoA synthetase; Validated

Probab=100.00  E-value=5.9e-52  Score=422.95  Aligned_cols=395  Identities=20%  Similarity=0.296  Sum_probs=313.4

Q ss_pred             cccchhHHHHHHHhhcCCCccccEEE---Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCce
Q psy8225          44 TLPTYARPLFVRTIREVPMTGAYKYT---VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVV  119 (479)
Q Consensus        44 ~~~~~l~~~l~~~~~~~p~~~a~~~~---~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~  119 (479)
                      ..+.++.++|.+.++.+|+++|+.+.   +|| ||.+++.++|..|.+.|+++||+|+++++|+++++++++||+++|++
T Consensus         4 ~~~~~~~~~~~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~lA~~~~G~~   83 (528)
T PRK07470          4 RRVMNLAHFLRQAARRFPDRIALVWGDRSWTWREIDARVDALAAALAARGVRKGDRILVHSRNCNQMFESMFAAFRLGAV   83 (528)
T ss_pred             ccCCCHHHHHHHHHHHCCCceEEEECCccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhCCeE
Confidence            35677899999999999999999887   999 99999999999999999999999999999999999999999999999


Q ss_pred             eeeecCCcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCCcc-eEEecCCCCCCCccCCCccccccccCCcCCCCCC
Q psy8225         120 AAFINTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGI-SLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSP  198 (479)
Q Consensus       120 ~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (479)
                      ++++++..+.+++.++++.++++.++++.+............+.. .++......        ....+++++........
T Consensus        84 ~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~  155 (528)
T PRK07470         84 WVPTNFRQTPDEVAYLAEASGARAMICHADFPEHAAAVRAASPDLTHVVAIGGAR--------AGLDYEALVARHLGARV  155 (528)
T ss_pred             EEecCccCCHHHHHHHHHhcCceEEEEcchhHHHHHHHHhhCCcCceEEEeCCCc--------ccccHHHHHhcCCCCCC
Confidence            999999999999999999999999999987655554443322222 222222211        01223333222111111


Q ss_pred             cccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhc--CCCCCCeEEEeccchhhhhhHHHHHHHHhcCc
Q psy8225         199 TEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQT--GLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGS  276 (479)
Q Consensus       199 ~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~--~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G~  276 (479)
                      .  ......+++++++|||||||.||+|+++|+++...+.......  +...+|+++..+|++|.+++. .++ .+..|+
T Consensus       156 ~--~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~-~~~-~~~~g~  231 (528)
T PRK07470        156 A--NAAVDHDDPCWFFFTSGTTGRPKAAVLTHGQMAFVITNHLADLMPGTTEQDASLVVAPLSHGAGIH-QLC-QVARGA  231 (528)
T ss_pred             C--cccCCCCCeEEEEeCCCCCCCCcEEEEehhhHHHHHHHHHHHhccCCCcccEEEEeccchhHHHHH-HHH-HHhcCc
Confidence            1  1334568899999999999999999999999876544322222  467789999999999998864 344 456666


Q ss_pred             eEEecC--CCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEE--ecCCChhhHHHHHHHhCcceeee
Q psy8225         277 TVVIRS--KFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICE  352 (479)
Q Consensus       277 ~~v~~~--~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~--G~~l~~~~~~~~~~~~~~~~v~~  352 (479)
                      +.++.+  .+++..+++.|+++++|++.++|++++.+.+.+......++++|.++  |+++++++.+++.+.+|. .+++
T Consensus       232 ~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~g~-~~~~  310 (528)
T PRK07470        232 ATVLLPSERFDPAEVWALVERHRVTNLFTVPTILKMLVEHPAVDRYDHSSLRYVIYAGAPMYRADQKRALAKLGK-VLVQ  310 (528)
T ss_pred             eEEEecccCcCHHHHHHHHHhcCCeEEechHHHHHHHHhCcCcCCCCCcceEEEEEcCCCCCHHHHHHHHHHhCc-HHHH
Confidence            666554  57899999999999999999999999999887765556678999877  888999999999999998 8999


Q ss_pred             eccccccCcccccC-----------CCCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEe
Q psy8225         353 FYGATEGNANLMNA-----------DGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMI  421 (479)
Q Consensus       353 ~YG~tE~~~~~~~~-----------~~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~  421 (479)
                      .||+||+++.+...           ....+++|+|.+      +++++++|++ ++          +++.|+.|||+++ 
T Consensus       311 ~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~------g~~~~i~d~~-~~----------~~~~g~~Gel~i~-  372 (528)
T PRK07470        311 YFGLGEVTGNITVLPPALHDAEDGPDARIGTCGFERT------GMEVQIQDDE-GR----------ELPPGETGEICVI-  372 (528)
T ss_pred             hCCCcccCCceeecchhhccccccccceeeccCcccC------CcEEEEECCC-CC----------CCCCCCceEEEEe-
Confidence            99999987655321           112355666554      7889888854 44          5688999999998 


Q ss_pred             ecCCcccccccccCcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         422 KESRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       422 ~~~~~~~~~~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                         |+ .++.||+++++.+.+.+.      +|||+|||+|++|+||++++.||.||++
T Consensus       373 ---~~-~~~~gy~~~~~~~~~~~~------~~~~~TGDl~~~~~~g~l~~~GR~dd~i  420 (528)
T PRK07470        373 ---GP-AVFAGYYNNPEANAKAFR------DGWFRTGDLGHLDARGFLYITGRASDMY  420 (528)
T ss_pred             ---CC-ccchhhcCCHHHHHhhhc------CCcEecceeEEEccCCeEEEeCCccceE
Confidence               77 899999999888776654      7899999999999999999999999974

>PRK12476 putative fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=2.9e-52  Score=431.25  Aligned_cols=390  Identities=19%  Similarity=0.194  Sum_probs=298.9

Q ss_pred             chhHHHHHHHhhcCCCccccEE------------EEeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHh
Q psy8225          47 TYARPLFVRTIREVPMTGAYKY------------TVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGL  113 (479)
Q Consensus        47 ~~l~~~l~~~~~~~p~~~a~~~------------~~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~  113 (479)
                      .++.++++++++.+|+++|+++            .+|| ||.++++++|++|.+. +++||+|+++++|+++|++++|||
T Consensus        34 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~V~l~~~n~~e~~~~~lA~  112 (612)
T PRK12476         34 TTLISLIERNIANVGDTVAYRYLDHSHSAAGCAVELTWTQLGVRLRAVGARLQQV-AGPGDRVAILAPQGIDYVAGFFAA  112 (612)
T ss_pred             CcHHHHHHHHHHhCCCceEEEEEccCCCCCCcceEEeHHHHHHHHHHHHHHHHHh-cCCCCEEEEECCCChhHHHHHHHH
Confidence            5688999999999999999985            2999 9999999999999987 999999999999999999999999


Q ss_pred             hhcCceeeee-cCCcc--hHHHHHHHHhccceEEEeChhhHHHHHHhhccCCc---ceEEecCCCCCCCccCCCcccccc
Q psy8225         114 SKIGVVAAFI-NTNQR--QHILIHSIKVAECKAIIYGAELSEALTEVKDSIPG---ISLYAAGTRRKPQAKVLPSTTLLD  187 (479)
Q Consensus       114 ~~~G~~~v~l-~~~~~--~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~  187 (479)
                      +++|++++|+ ++.++  .+++.+++++++++++|++......+.+.....+.   ..++..+...              
T Consensus       113 ~~aG~v~vpl~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--------------  178 (612)
T PRK12476        113 IKAGTIAVPLFAPELPGHAERLDTALRDAEPTVVLTTTAAAEAVEGFLRNLPRLRRPRVIAIDAIP--------------  178 (612)
T ss_pred             HHcCceeEecCCCCcchhHHHHHHHHHhCCCCEEEEcHHHHHHHHHHHhhcccccCceEEEecccc--------------
Confidence            9999999999 57666  78999999999999999998766655444332221   1222222100              


Q ss_pred             ccCCcCCCCCCcccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcC-CCCCCeEEEeccchhhhhhHH
Q psy8225         188 EELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTG-LTSDDVVYTTLPLYHTAGGLL  266 (479)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~-~~~~d~~~~~~pl~h~~g~~~  266 (479)
                         ........   .....++++++|+|||||||.||||+++|+++...+......++ +.+++++++.+|++|..|+..
T Consensus       179 ---~~~~~~~~---~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~Pl~h~~g~~~  252 (612)
T PRK12476        179 ---DSAGESFV---PVELDTDDVSHLQYTSGSTRPPVGVEITHRAVGTNLVQMILSIDLLDRNTHGVSWLPLYHDMGLSM  252 (612)
T ss_pred             ---cccccccc---CCCCCCCceEEEEeCCCCCCCCceEEeeHHHHHHHHHHHHHHhccCCCCceEEEeCCcccccchHH
Confidence               00000000   02235688999999999999999999999999887776666666 688899999999999999865


Q ss_pred             HHHHHHhcCceEEecC-CC--ChhHHHHHHH--HhcccEEEEehHHHHHHhcCCC----CCCCCCCceeEEE-ecCCChh
Q psy8225         267 GIGQCLLGGSTVVIRS-KF--SASNFWKDCI--KYNCTVAQYIGEMCRYLLAVPE----KPEDTQHSVKMMI-GNGLRPQ  336 (479)
Q Consensus       267 ~~~~~l~~G~~~v~~~-~~--~~~~~~~~i~--~~~~t~~~~~p~~l~~l~~~~~----~~~~~l~~lr~~~-G~~l~~~  336 (479)
                      .+...+..|.++++.+ .+  ++..+++.++  +++++.+..+|+++..+.....    ....+++++|++. |++++++
T Consensus       253 ~~~~~~~gg~~~~~~~~~~~~~p~~~~~~i~~~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~l~~lr~~~gg~~~~~~  332 (612)
T PRK12476        253 IGFPAVYGGHSTLMSPTAFVRRPQRWIKALSEGSRTGRVVTAAPNFAYEWAAQRGLPAEGDDIDLSNVVLIIGSEPVSID  332 (612)
T ss_pred             HHHHHhcCCeEEEECHHHHHHHHHHHHHHHhhhccCCeEEEeCCcHHHHHHHHhcChhhhcCcchhHheEEecccCCCHH
Confidence            5555555555555543 23  8889999995  4899999999998887765421    1233578888333 8899999


Q ss_pred             hHHHHHHHh---Cc--ceeeeeccccccCcccccC-CC-----------------------------CCCcccccCcccc
Q psy8225         337 VWEPFQKRF---GL--DRICEFYGATEGNANLMNA-DG-----------------------------KVGAVGYIPYIAI  381 (479)
Q Consensus       337 ~~~~~~~~~---~~--~~v~~~YG~tE~~~~~~~~-~~-----------------------------~~~~~g~~~~~~~  381 (479)
                      +.++|.+.|   |.  ..+++.||+||++..+... +.                             ..+++|+|++   
T Consensus       333 ~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~~~~---  409 (612)
T PRK12476        333 AVTTFNKAFAPYGLPRTAFKPSYGIAEATLFVATIAPDAEPSVVYLDREQLGAGRAVRVAADAPNAVAHVSCGQVAR---  409 (612)
T ss_pred             HHHHHHHHHHhcCCCccccccccchhhhheeeeccCCCCCceEEEEcHHHhhCCCeeecCCCCCCcceeEeCCCcCC---
Confidence            999999988   43  2589999999987554321 10                             1135566554   


Q ss_pred             CCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCcccccccccCcchhHHHHHhhhc----c--------
Q psy8225         382 PFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNGYADKKASEKKILRNVY----S--------  449 (479)
Q Consensus       382 ~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~gY~~~~~~~~~~~~~~~----~--------  449 (479)
                         +++++++|+++++          +++.|+.|||+++    |+ +++.|||++++.+.+.|.+..    .        
T Consensus       410 ---g~~v~ivd~~~g~----------~~~~g~~GEl~v~----g~-~v~~GY~~~~~~t~~~f~~~~~~~~~~g~~~~~~  471 (612)
T PRK12476        410 ---SQWAVIVDPDTGA----------ELPDGEVGEIWLH----GD-NIGRGYWGRPEETERTFGAKLQSRLAEGSHADGA  471 (612)
T ss_pred             ---CCEEEEEeCCCCc----------CCCCCCEEEEEEc----CC-cccccccCChHHHHHHHhhhhccccccccccccc
Confidence               7999999977666          5689999999998    88 899999999888877664211    0        


Q ss_pred             -CCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         450 -HGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       450 -~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                       .+++||+|||+|++ +||+|+|+||+||++
T Consensus       472 ~~~~~w~~TGDlg~~-~dG~l~i~GR~~d~I  501 (612)
T PRK12476        472 ADDGTWLRTGDLGVY-LDGELYITGRIADLI  501 (612)
T ss_pred             cCCCCeeecccccee-ECCEEEEEeccCcEE
Confidence             12469999999998 499999999999974

>KOG1180|consensus

Probab=100.00  E-value=3.6e-53  Score=393.64  Aligned_cols=409  Identities=19%  Similarity=0.179  Sum_probs=322.3

Q ss_pred             cchhHHHHHHHhhcCCCccccEEE--------------------------Eeh-hhHHHHHHHHHHHHHcCCCCCCE-EE
Q psy8225          46 PTYARPLFVRTIREVPMTGAYKYT--------------------------VTF-QVEDHSNRIANFFKSKGLQRGDA-VA   97 (479)
Q Consensus        46 ~~~l~~~l~~~~~~~p~~~a~~~~--------------------------~Ty-~l~~~~~~la~~L~~~gi~~gd~-V~   97 (479)
                      -.|+++++.+.++++.++.++.++                          +|| |+..++.++|++|.+.|++++++ |+
T Consensus        40 ~~Tl~~~~~~~~~k~g~~~~mGtR~li~~h~ek~~dGK~f~k~~Lg~Y~w~sy~ev~~~~~~~gsGL~~lG~k~~e~k~~  119 (678)
T KOG1180|consen   40 ASTLYELFEECVKKFGKKDAMGTRELIKEHEEKQVDGKTFEKYELGDYKWMSYNEVYERVHNFGSGLVKLGLKPKETKIA  119 (678)
T ss_pred             cccHHHHHHHHHHhcCCCccccHHHHHHHHhhccCCCeEEEEEeccceeeecHHHHHHHHHHHHHHHHHhCCCCCCCeEE
Confidence            367888888888888888888764                          799 99999999999999999997766 99


Q ss_pred             EEcCCchHHHHHHHHhhhcCceeeeecCCcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCCcceEEecCCC---CC
Q psy8225          98 LFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTR---RK  174 (479)
Q Consensus        98 i~~~n~~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~  174 (479)
                      |+.+.+.+|+++++||++.+..+|.++.++..+.+.|-|+.++++.|||+.+..+.+....+..+.++.++..+.   ..
T Consensus       120 iFa~TraeWm~ta~gC~~q~ipvVT~Y~TLGeeal~hsl~Et~~~~i~T~~~LL~kl~~~l~~~~~vk~II~~d~id~~~  199 (678)
T KOG1180|consen  120 IFAETRAEWMITAQGCFSQNIPVVTAYATLGEEALIHSLNETESTAIFTDSELLPKLKAPLKQAKTVKHIIYFDPIDYDA  199 (678)
T ss_pred             EEecchHHHHHHHHHHHhcCCeEEEEehhcChhhhhhhhccccceEEEeCHHHHHHHHHHHhccCceeEEEEecCCCCcc
Confidence            999999999999999999999999999999999999999999999999999999988888888887775443332   11


Q ss_pred             CCc------cCCCccccccccCCcCCCCCCcccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhc-CCC
Q psy8225         175 PQA------KVLPSTTLLDEELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQT-GLT  247 (479)
Q Consensus       175 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~-~~~  247 (479)
                      ...      +....+.+|+++++-+.....+.  .++.++|+|+|||||||||.||||+++|.|+++.+....... .+.
T Consensus       200 ~~~~v~~i~~p~i~i~Sf~~v~~lG~~~~~~~--~~P~p~Dia~IMYTSGSTG~PKGVml~H~NiVA~~~G~~~~v~~lg  277 (678)
T KOG1180|consen  200 AKDDVNSIVRPDIKIISFDDVEKLGKENEIPP--HPPKPSDIACIMYTSGSTGLPKGVMLTHSNIVAGVTGVGENVPELG  277 (678)
T ss_pred             chhhhhhhccCCeEEEEHHHHHhhCCcCCCCC--CCCCCCceEEEEEcCCCCCCCceEEEecccHHhhhhhhcccCcccC
Confidence            111      12245677888887776664222  444789999999999999999999999999999888766544 688


Q ss_pred             CCCeEEEeccchhhhhhHHHHHHHHhcCceEEecCCCCh--------hHHHHHHHHhcccEEEEehHHHHHHhcCC----
Q psy8225         248 SDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSA--------SNFWKDCIKYNCTVAQYIGEMCRYLLAVP----  315 (479)
Q Consensus       248 ~~d~~~~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~--------~~~~~~i~~~~~t~~~~~p~~l~~l~~~~----  315 (479)
                      +.|++++.+|+.|++.+.+.+ .++..|+++=..+....        ..---.+..+++|++.++|.+++++.+..    
T Consensus       278 ~~D~yi~yLPLAHIlEl~aE~-~~ft~G~~iGY~S~~TLtdts~ki~kg~kGD~~~lkPTiM~~VpAV~drVrKgVl~kV  356 (678)
T KOG1180|consen  278 PKDRYIAYLPLAHILELTAEL-VCFTWGGRIGYSSPLTLTDTSSKIKKGCKGDLTELKPTIMAAVPAVMDRVRKGVLSKV  356 (678)
T ss_pred             CCceEEEechHHHHHHHHHHH-HHHhhCCEeecCCcceecccchhhccCCcCccccccchhhhhhHHHHHHHHHHHHHHH
Confidence            999999999999999987665 58888988876543211        11122356689999999999877632211    


Q ss_pred             ----------------------CCCCC----------------CCCceeEEE--ecCCChhhHHHHHHHhCcceeeeecc
Q psy8225         316 ----------------------EKPED----------------TQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFYG  355 (479)
Q Consensus       316 ----------------------~~~~~----------------~l~~lr~~~--G~~l~~~~~~~~~~~~~~~~v~~~YG  355 (479)
                                            +....                .-..||.++  |+++++++.+.+.-.+.+ ++.++||
T Consensus       357 ~~~~~~~k~lF~~aY~~K~~~~~~~g~~s~~ld~lVFkKIr~~lGG~lR~~LsGGapLS~dtQrF~nic~C~-Pv~qGYG  435 (678)
T KOG1180|consen  357 NAMPGLQKKLFWTAYERKLSLIERNGPGSPLLDALVFKKIRALLGGNLRYILSGGAPLSPDTQRFMNICFCC-PVLQGYG  435 (678)
T ss_pred             hhchHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHHhCCceEEEEeCCCCCCHHHHHHHHHhccc-ccccccc
Confidence                                  00000                012788887  788999998888888888 9999999


Q ss_pred             ccccCccccc---CCCCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCccccccc
Q psy8225         356 ATEGNANLMN---ADGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNG  432 (479)
Q Consensus       356 ~tE~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~g  432 (479)
                      .||+++..+-   .+...|.+|.|++      -++++.+|-+.+.....++      |  ..|||+++    |+ ++..|
T Consensus       436 LTEtca~~tv~e~~d~~~g~vG~pl~------c~eiKLvdw~EgGY~~~~~------P--PrGEI~i~----G~-~vt~g  496 (678)
T KOG1180|consen  436 LTETCAAATVLEPEDFSTGRVGAPLP------CCEIKLVDWEEGGYFAKNK------P--PRGEILIG----GP-NVTMG  496 (678)
T ss_pred             ccchhcccEecChhhcccccccCCcc------ceEEEEEEhhhcCccCCCC------C--CCceEEec----CC-ccChh
Confidence            9998755432   2345567777766      4889989887766543332      1  37999998    88 99999


Q ss_pred             ccCcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         433 YADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       433 Y~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                      ||++++.|++.|..  .+|.+||+|||+|++.+||.|.|.+|+||+|
T Consensus       497 Y~kn~ekT~e~ft~--~~G~~WF~TGDIGe~~pdG~LkIIDRKKdLV  541 (678)
T KOG1180|consen  497 YYKNEEKTKEDFTV--EDGQRWFRTGDIGEFHPDGCLKIIDRKKDLV  541 (678)
T ss_pred             hhCChhhhhhhcee--cCCcEEEeccccceecCCCcEEEeechhhhh
Confidence            99999988877652  3344599999999999999999999999986

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=100.00  E-value=2.8e-52  Score=462.69  Aligned_cols=404  Identities=21%  Similarity=0.248  Sum_probs=324.6

Q ss_pred             chhHHHHHHHhhcCCCccccEEE----Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCceee
Q psy8225          47 TYARPLFVRTIREVPMTGAYKYT----VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAA  121 (479)
Q Consensus        47 ~~l~~~l~~~~~~~p~~~a~~~~----~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v  121 (479)
                      .++.+++.++++++|+++|+++.    +|| ||.++++++|+.|++ ++++||+|+++++|+++++++++||+++|++++
T Consensus       615 ~~l~~~~~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~a~~L~~-~~~~g~~V~i~~~n~~~~~~~~la~~~~G~v~v  693 (1146)
T PRK08633        615 PPLAEAWIDTAKRNWSRLAVADSTGGELSYGKALTGALALARLLKR-ELKDEENVGILLPPSVAGALANLALLLAGKVPV  693 (1146)
T ss_pred             CCHHHHHHHHHHhcCCCcEEEcCCCCcCcHHHHHHHHHHHHHHHHH-hCCCCCeEEEECCCchHHHHHHHHHHHcCCEEE
Confidence            66899999999999999999873    999 999999999999987 489999999999999999999999999999999


Q ss_pred             eecCCcchHHHHHHHHhccceEEEeChhhHHHHHHhhc--cCC-cceEEecCCCCCCCccCCCccccccccCCcCCCCC-
Q psy8225         122 FINTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKD--SIP-GISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKS-  197 (479)
Q Consensus       122 ~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  197 (479)
                      |+++..+.+++.++++++++++++++++..+.+.+...  ..+ ..+++..++....    ......+.+......... 
T Consensus       694 ~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~  769 (1146)
T PRK08633        694 NLNYTASEAALKSAIEQAQIKTVITSRKFLEKLKNKGFDLELPENVKVIYLEDLKAK----ISKVDKLTALLAARLLPAR  769 (1146)
T ss_pred             EeCCCcCHHHHHHHHHHcCCCEEEEcHHHHHHHhccCCchhcccCceEEEeehhccc----cchhHHHHHHHHhccCCHH
Confidence            99999999999999999999999998876655432110  111 1223322221100    000111111111000000 


Q ss_pred             --CcccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcCCCCCCeEEEeccchhhhhhHHHHHHHHhcC
Q psy8225         198 --PTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGG  275 (479)
Q Consensus       198 --~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G  275 (479)
                        .........++++++++|||||||.||+|+++|+++...+......++...+|++++.+|++|.+|+...++.++..|
T Consensus       770 ~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g  849 (1146)
T PRK08633        770 LLKRLYGPTFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVFNLRNDDVILSSLPFFHSFGLTVTLWLPLLEG  849 (1146)
T ss_pred             HHHhhccCCCCCCCEEEEEECCCCCCCCceEEechHHHHHHHHHHHHhcCCCCCCEEEEcCcHHHHHhHHHHHHHHHHCC
Confidence              000013346789999999999999999999999999988888777888899999999999999999877778899999


Q ss_pred             ceEEecC-CCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEE--ecCCChhhHHHHHHHhCcceeee
Q psy8225         276 STVVIRS-KFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICE  352 (479)
Q Consensus       276 ~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~--G~~l~~~~~~~~~~~~~~~~v~~  352 (479)
                      +++++.+ .+++..+++.++++++|++..+|++++.+.+........++++|.+.  |+++++++.+++++.+|. ++++
T Consensus       850 ~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~g~-~~~~  928 (1146)
T PRK08633        850 IKVVYHPDPTDALGIAKLVAKHRATILLGTPTFLRLYLRNKKLHPLMFASLRLVVAGAEKLKPEVADAFEEKFGI-RILE  928 (1146)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhccccCcccCCCeeeEEEcCCcCCHHHHHHHHHHhCC-Ceec
Confidence            9998866 57899999999999999999999999999887655556678999877  889999999999999998 9999


Q ss_pred             eccccccCcccccC-C------------CCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEE
Q psy8225         353 FYGATEGNANLMNA-D------------GKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIG  419 (479)
Q Consensus       353 ~YG~tE~~~~~~~~-~------------~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v  419 (479)
                      .||+||+++.+... +            .+++++|+|.|      +++++++|+++++          +|++|+.|||++
T Consensus       929 ~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~------~~~v~i~d~~~~~----------~~~~g~~Gel~v  992 (1146)
T PRK08633        929 GYGATETSPVASVNLPDVLAADFKRQTGSKEGSVGMPLP------GVAVRIVDPETFE----------ELPPGEDGLILI  992 (1146)
T ss_pred             ccccccCcceEEEecCcccccccccccCCCCCCccccCC------CCEEEEEcCCCCc----------cCCCCCceEEEE
Confidence            99999988655321 1            23456666655      8999999988776          678999999999


Q ss_pred             EeecCCcccccccccCcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         420 MIKESRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       420 ~~~~~~~~~~~~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                      +    |+ +++.||+++++.+++.+.+  .+++|||+|||+|++|+||++++.||.||++
T Consensus       993 ~----g~-~~~~gY~~~~~~t~~~~~~--~~~~~~~~TGD~~~~~~~g~l~~~gR~~d~i 1045 (1146)
T PRK08633        993 G----GP-QVMKGYLGDPEKTAEVIKD--IDGIGWYVTGDKGHLDEDGFLTITDRYSRFA 1045 (1146)
T ss_pred             c----CC-CccccccCCccchHHHhhc--CCCCCeEECCCEEEEcCCceEEEEecccchh
Confidence            8    77 9999999998888777652  1345999999999999999999999999985

>PRK07786 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.4e-51  Score=421.07  Aligned_cols=394  Identities=21%  Similarity=0.259  Sum_probs=319.4

Q ss_pred             chhHHHHHHHhhcCCCccccEEE---Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCceeee
Q psy8225          47 TYARPLFVRTIREVPMTGAYKYT---VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAF  122 (479)
Q Consensus        47 ~~l~~~l~~~~~~~p~~~a~~~~---~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~  122 (479)
                      +.+.+.+.++++.+|+++|+.+.   +|| ||.++++++|.+|.+.|+++||+|+++++|+++++++++||+++|++++|
T Consensus        17 ~n~~~~~~~~a~~~~~~~a~~~~~~~~ty~~l~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~~a~~~~G~~~vp   96 (542)
T PRK07786         17 QNWVNQLARHALMQPDAPALRFLGNTTTWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESVLAANMLGAIAVP   96 (542)
T ss_pred             cCHHHHHHHHHHHCCCCeEEEeCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEEE
Confidence            34789999999999999999986   999 99999999999999999999999999999999999999999999999999


Q ss_pred             ecCCcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCCcce-EEecCCCCCCCccCCCccccccccCCcCCCCCCccc
Q psy8225         123 INTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGIS-LYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTED  201 (479)
Q Consensus       123 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (479)
                      +++..+.+++.++++.+++++++++......+.......+..+ ++...+..      ......+++++........   
T Consensus        97 l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~---  167 (542)
T PRK07786         97 VNFRLTPPEIAFLVSDCGAHVVVTEAALAPVATAVRDIVPLLSTVVVAGGSS------DDSVLGYEDLLAEAGPAHA---  167 (542)
T ss_pred             cCccCCHHHHHHHHHhCCCcEEEEccchHHHHHHhhhccCccceEEEecCCC------cccccCHHHHhhccCCCCC---
Confidence            9999999999999999999999998876655544433333333 22222111      0122334443332211111   


Q ss_pred             ccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcCC-CCCCeEEEeccchhhhhhHHHHHHHHhcCceEEe
Q psy8225         202 IKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGL-TSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVI  280 (479)
Q Consensus       202 ~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~-~~~d~~~~~~pl~h~~g~~~~~~~~l~~G~~~v~  280 (479)
                      ......+++++++|||||||.||+|.++|+++...+......+++ ..++++++..|++|.+|+ ..++.++..|+++++
T Consensus       168 ~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~-~~~~~~l~~G~~~v~  246 (542)
T PRK07786        168 PVDIPNDSPALIMYTSGTTGRPKGAVLTHANLTGQAMTCLRTNGADINSDVGFVGVPLFHIAGI-GSMLPGLLLGAPTVI  246 (542)
T ss_pred             CCCCCCCCeEEEEeCCCCCccchhhhhhHHHHHHHHHHHHHhcCCCCCCceEEEecchHHHHHH-HHHHHHHHccCEEEE
Confidence            123445779999999999999999999999998888777666666 677899999999999887 667889999999998


Q ss_pred             cC--CCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEE--ecCCChhhHHHHHHHhCcceeeeeccc
Q psy8225         281 RS--KFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFYGA  356 (479)
Q Consensus       281 ~~--~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~--G~~l~~~~~~~~~~~~~~~~v~~~YG~  356 (479)
                      .+  .+++..+++.++++++|.+.++|+++..|......... ..++|.++  |+++++++++++.+.++..++++.||+
T Consensus       247 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~-~~~lr~i~~gg~~~~~~~~~~~~~~~~~~~l~~~YG~  325 (542)
T PRK07786        247 YPLGAFDPGQLLDVLEAEKVTGIFLVPAQWQAVCAEQQARPR-DLALRVLSWGAAPASDTLLRQMAATFPEAQILAAFGQ  325 (542)
T ss_pred             ccCCCcCHHHHHHHHHHcCCeEEEehHHHHHHHHhCcccCcc-CcceEEEEECCCCCCHHHHHHHHHHcCCCeEEeeecc
Confidence            65  57999999999999999999999999999876544332 23688766  888999999999999954489999999


Q ss_pred             cccCcccccCC-----CCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCcccccc
Q psy8225         357 TEGNANLMNAD-----GKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFN  431 (479)
Q Consensus       357 tE~~~~~~~~~-----~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~  431 (479)
                      ||++.+.....     ..++++|+|++      ++.+.++|++ +.          +++.|+.|||+++    |+ .++.
T Consensus       326 tE~~~~~~~~~~~~~~~~~~~~G~~~~------~~~~~i~d~~-~~----------~~~~g~~Gel~v~----g~-~~~~  383 (542)
T PRK07786        326 TEMSPVTCMLLGEDAIRKLGSVGKVIP------TVAARVVDEN-MN----------DVPVGEVGEIVYR----AP-TLMS  383 (542)
T ss_pred             cccccceEecCcccccccCCCccccCC------CceEEEECCC-CC----------CCcCCCceEEEEE----Ch-hhhh
Confidence            99986544221     24466777665      7889999854 44          5688999999998    77 8999


Q ss_pred             cccCcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         432 GYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       432 gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                      ||+++++.+...|.      +|||+|||++++++||+++++||.||++
T Consensus       384 gy~~~~~~~~~~f~------~~~~~TGDl~~~~~~g~~~i~GR~~d~i  425 (542)
T PRK07786        384 GYWNNPEATAEAFA------GGWFHSGDLVRQDEEGYVWVVDRKKDMI  425 (542)
T ss_pred             hhcCCHHHHHHHhh------CCcccccceEEEcCCceEEEEecccceE
Confidence            99999888877664      7899999999999999999999999974

>PRK06188 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.7e-51  Score=419.19  Aligned_cols=393  Identities=21%  Similarity=0.275  Sum_probs=320.3

Q ss_pred             ccchhHHHHHHHhhcCCCccccEEE---Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCcee
Q psy8225          45 LPTYARPLFVRTIREVPMTGAYKYT---VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVA  120 (479)
Q Consensus        45 ~~~~l~~~l~~~~~~~p~~~a~~~~---~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~  120 (479)
                      .+.++.++|.++++++|+++|+++.   +|| ||.++++++|..|.+.|+++|++|+++++|+++++++++||+++|+++
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~gv~~~~~V~i~~~~~~~~~~~~la~~~~G~~~   89 (524)
T PRK06188         10 SGATYGHLLVSALKRYPDRPALVLGDTRLTYGQLADRISRYIQAFEALGLGTGDAVALLSLNRPEVLMAIGAAQLAGLRR   89 (524)
T ss_pred             CCccHHHHHHHHHHHCCCCeEEEECCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCCEE
Confidence            4567999999999999999999987   999 999999999999999999999999999999999999999999999999


Q ss_pred             eeecCCcchHHHHHHHHhccceEEEeChh-hHHHHHHhhccCCcce-EEecCCCCCCCccCCCccccccccCCcCCCCCC
Q psy8225         121 AFINTNQRQHILIHSIKVAECKAIIYGAE-LSEALTEVKDSIPGIS-LYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSP  198 (479)
Q Consensus       121 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (479)
                      +|++|..+.+++.++++.++++.+++++. ......+.....+.+. ++.......           ..++.........
T Consensus        90 v~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~  158 (524)
T PRK06188         90 TALHPLGSLDDHAYVLEDAGISTLIVDPAPFVERALALLARVPSLKHVLTLGPVPD-----------GVDLLAAAAKFGP  158 (524)
T ss_pred             EecccCCCHHHHHHHHHhcCceEEEEecchhhHHHHHHhhhcCCceEEEEeCCccc-----------hhhHHHhhhccCc
Confidence            99999999999999999999999999876 3333333333333222 222221110           0011100000000


Q ss_pred             cccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcCCCCCCeEEEeccchhhhhhHHHHHHHHhcCceE
Q psy8225         199 TEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTV  278 (479)
Q Consensus       199 ~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G~~~  278 (479)
                      .........+++++++|||||||.||+|.++|.++...+......+++..++++++.+|++|.+|+.  ++.++..|+++
T Consensus       159 ~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~--~~~~l~~G~~~  236 (524)
T PRK06188        159 APLVAAALPPDIAGLAYTGGTTGKPKGVMGTHRSIATMAQIQLAEWEWPADPRFLMCTPLSHAGGAF--FLPTLLRGGTV  236 (524)
T ss_pred             ccccccCCCCCeEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhcCCCcCcEEEEecCchhhhhHH--HHHHHHcCCEE
Confidence            0001222445699999999999999999999999998888888888899999999999999998853  56778899999


Q ss_pred             EecCCCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEE--ecCCChhhHHHHHHHhCcceeeeeccc
Q psy8225         279 VIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFYGA  356 (479)
Q Consensus       279 v~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~--G~~l~~~~~~~~~~~~~~~~v~~~YG~  356 (479)
                      ++.+.+++..+++.++++++|++..+|+++..+++........++++|.++  |++++++..+.+.+.++. .+++.||+
T Consensus       237 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gg~~~~~~~~~~~~~~~~~-~~~~~YG~  315 (524)
T PRK06188        237 IVLAKFDPAEVLRAIEEQRITATFLVPTMIYALLDHPDLRTRDLSSLETVYYGASPMSPVRLAEAIERFGP-IFAQYYGQ  315 (524)
T ss_pred             EEcCCCCHHHHHHHHHHhCCEEEEehHHHHHHHHhCcCccCCCCcceeEEEEcCCCCCHHHHHHHHHHhCc-hhhheeCc
Confidence            999999999999999999999999999999999988766666788999877  888999999999999998 89999999


Q ss_pred             cccCcccccCC---------CCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCcc
Q psy8225         357 TEGNANLMNAD---------GKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAE  427 (479)
Q Consensus       357 tE~~~~~~~~~---------~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~  427 (479)
                      ||++..+....         ..++++|+|+|      ++.+.++|++ +.          +++.|+.|||+++    |+ 
T Consensus       316 tE~~~~~~~~~~~~~~~~~~~~~~~~G~p~~------g~~v~i~~~~-~~----------~~~~g~~Gel~v~----~~-  373 (524)
T PRK06188        316 TEAPMVITYLRKRDHDPDDPKRLTSCGRPTP------GLRVALLDED-GR----------EVAQGEVGEICVR----GP-  373 (524)
T ss_pred             cccCCceeecCchhccccccccCCccccccC------CcEEEEEcCC-CC----------CCCCCCeeEEEEE----Cc-
Confidence            99975554321         23455666655      7889988865 54          5688999999998    77 


Q ss_pred             cccccccCcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         428 SHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       428 ~~~~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                      .++.||++++..+...+.      +|||+|||+|++|+||++++.||.||++
T Consensus       374 ~~~~gy~~~~~~~~~~~~------~g~~~TGDl~~~~~~g~~~~~GR~~~~i  419 (524)
T PRK06188        374 LVMDGYWNRPEETAEAFR------DGWLHTGDVAREDEDGFYYIVDRKKDMI  419 (524)
T ss_pred             chhhhhcCChHHhhhhhc------CCceeecceEEEcCCccEEEEeccccce
Confidence            899999999877766553      7899999999999999999999999974

>PRK03584 acetoacetyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.7e-51  Score=428.87  Aligned_cols=394  Identities=15%  Similarity=0.167  Sum_probs=299.4

Q ss_pred             cCCCccccEEE--------Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCceeeeecCCcch
Q psy8225          59 EVPMTGAYKYT--------VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQ  129 (479)
Q Consensus        59 ~~p~~~a~~~~--------~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~l~~~~~~  129 (479)
                      .+|+++|+++.        +|| ||.+++.++|+.|+++|+++||+|+++++|++++++++|||+++|++++|+++.++.
T Consensus        96 ~~~~~~Al~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~v~~~lA~~~~Gav~v~l~~~~~~  175 (655)
T PRK03584         96 RRDDRPAIIFRGEDGPRRELSWAELRRQVAALAAALRALGVGPGDRVAAYLPNIPETVVAMLATASLGAIWSSCSPDFGV  175 (655)
T ss_pred             CCCCCeEEEEECCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEeeCCCCCH
Confidence            57999999974        999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccceEEEeChhh---------HHHHHHhhccCCcce-EEecCCCCC-CCccCCCccccccccCCcCCCCCC
Q psy8225         130 HILIHSIKVAECKAIIYGAEL---------SEALTEVKDSIPGIS-LYAAGTRRK-PQAKVLPSTTLLDEELPEVSAKSP  198 (479)
Q Consensus       130 ~~l~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  198 (479)
                      +++.++++.++++++|+++..         .+.+.++....+.+. ++++..... ...........|++++........
T Consensus       176 ~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (655)
T PRK03584        176 QGVLDRFGQIEPKVLIAVDGYRYGGKAFDRRAKVAELRAALPSLEHVVVVPYLGPAAAAAALPGALLWEDFLAPAEAAEL  255 (655)
T ss_pred             HHHHHHHHHcCCcEEEEccccccCCcccchHHHHHHHHhcCCCccEEEEEecCCCcccccccCCcccHHHHhhccccCCC
Confidence            999999999999999997642         233333434444332 232221110 000001122334444331111111


Q ss_pred             cccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHH-HhhhhhhhcCCCCCCeEEEeccchhhhhhHHHHHHHHhcCce
Q psy8225         199 TEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMF-MAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGST  277 (479)
Q Consensus       199 ~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~-~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G~~  277 (479)
                      .  ......+++++|+|||||||.||||+++|++++. ........+++.++|++++..++.|..+  ..++.++..|++
T Consensus       256 ~--~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--~~~~~~L~~G~t  331 (655)
T PRK03584        256 E--FEPVPFDHPLWILYSSGTTGLPKCIVHGHGGILLEHLKELGLHCDLGPGDRFFWYTTCGWMMW--NWLVSGLLVGAT  331 (655)
T ss_pred             C--ceecCCCCcEEEEecCCCCCCCceEEECccHHHHHHHHHHHHhcCCCCCCEEEEcCCchHHhH--HHHHHHHHcCCE
Confidence            1  1334678999999999999999999999998764 3455556678899999999999988754  235678999999


Q ss_pred             EEecCC----CChhHHHHHHHHhcccEEEEehHHHHHHhcCCC--CCCCCCCceeEEE--ecCCChhhHHHHHHHhC-cc
Q psy8225         278 VVIRSK----FSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPE--KPEDTQHSVKMMI--GNGLRPQVWEPFQKRFG-LD  348 (479)
Q Consensus       278 ~v~~~~----~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~--~~~~~l~~lr~~~--G~~l~~~~~~~~~~~~~-~~  348 (479)
                      +++.+.    +++..+++.++++++|++.++|++++.+.+...  ....++++||.++  |+++++++.+++.+.++ ..
T Consensus       332 ~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~~Ge~l~~~~~~~~~~~~~~~~  411 (655)
T PRK03584        332 LVLYDGSPFYPDPNVLWDLAAEEGVTVFGTSAKYLDACEKAGLVPGETHDLSALRTIGSTGSPLPPEGFDWVYEHVKADV  411 (655)
T ss_pred             EEEeCCCCCCCCHHHHHHHHHHHCCEEEEcCHHHHHHHHhcCCCccccCChhheEEEEEecCCCCHHHHHHHHHHhCCCc
Confidence            998752    478999999999999999999999998876532  2234678999877  89999999999999984 23


Q ss_pred             eeeeeccccccCcccc-c---CCCCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecC
Q psy8225         349 RICEFYGATEGNANLM-N---ADGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKES  424 (479)
Q Consensus       349 ~v~~~YG~tE~~~~~~-~---~~~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~  424 (479)
                      .+++.||+||+++... .   .+..++++|.|.+      +++++++|++ |+          ++ .|+.|||+++    
T Consensus       412 ~~~~~yG~TE~~~~~~~~~~~~~~~~g~~g~p~~------g~~~~ivd~~-g~----------~~-~g~~GeL~v~----  469 (655)
T PRK03584        412 WLASISGGTDICSCFVGGNPLLPVYRGEIQCRGL------GMAVEAWDED-GR----------PV-VGEVGELVCT----  469 (655)
T ss_pred             eEEeccChHhhhcccccCCCCCCcCCCccCCCcC------CceeEEECCC-CC----------CC-CCCceEEEEc----
Confidence            8999999999864432 2   1334567777655      7899999955 44          44 6889999998    


Q ss_pred             Cc-ccccccccCcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         425 RA-ESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       425 ~~-~~~~~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                      +| ++++.|||++++.++ ....+|...+|||+|||+|++|+||+|+|+||.||++
T Consensus       470 gp~p~~~~gy~~~~~~~~-~~~~~~~~~~g~~~TGDl~~~d~dG~l~i~GR~dd~I  524 (655)
T PRK03584        470 KPFPSMPLGFWNDPDGSR-YRDAYFDTFPGVWRHGDWIEITEHGGVVIYGRSDATL  524 (655)
T ss_pred             cCCCCCcceeeCCCccch-HHHhhhccCCCEeecCCeEEECCCCeEEEEeeccCee
Confidence            54 278999999876432 2222333346799999999999999999999999984

>PRK06164 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.7e-51  Score=420.64  Aligned_cols=403  Identities=19%  Similarity=0.245  Sum_probs=310.9

Q ss_pred             cchhHHHHHHHhhcCCCccccEEE---Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCceee
Q psy8225          46 PTYARPLFVRTIREVPMTGAYKYT---VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAA  121 (479)
Q Consensus        46 ~~~l~~~l~~~~~~~p~~~a~~~~---~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v  121 (479)
                      ..++.++|.+.++.+|+++|++..   +|| ||.+++.++|+.|.+.|+++||+|+++++|+++++++++||+++|++++
T Consensus         9 ~~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~~L~~~~~~~a~~L~~~g~~~g~~V~i~~~n~~~~~~~~la~~~~G~~~v   88 (540)
T PRK06164          9 ADTLASLLDAHARARPDAVALIDEDRPLSRAELRALVDRLAAWLAAQGVRRGDRVAVWLPNCIEWVVLFLACARLGATVI   88 (540)
T ss_pred             CCCHHHHHHHHHHhCCCCeEEecCCCcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEE
Confidence            356899999999999999999976   999 9999999999999999999999999999999999999999999999999


Q ss_pred             eecCCcchHHHHHHHHhccceEEEeChhhH-----HHHHHhhcc-CCcce-EEecCCCCCCCccCCCccccccccCCcCC
Q psy8225         122 FINTNQRQHILIHSIKVAECKAIIYGAELS-----EALTEVKDS-IPGIS-LYAAGTRRKPQAKVLPSTTLLDEELPEVS  194 (479)
Q Consensus       122 ~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (479)
                      |+++..+.+++.++++.++++++|++.+..     ..+...... .+.++ ++..+.... .... .....+.+......
T Consensus        89 ~l~~~~~~~~l~~~i~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~  166 (540)
T PRK06164         89 AVNTRYRSHEVAHILGRGRARWLVVWPGFKGIDFAAILAAVPPDALPPLRAIAVVDDAAD-ATPA-PAPGARVQLFALPD  166 (540)
T ss_pred             ecCCCCCcHHHHHHHHhcCccEEEEccccccccHHHHhhcccccccCCcceEEEeccCcc-cCCC-CCcccccccccccc
Confidence            999999999999999999999999976542     122221111 11222 222221100 0000 00000111111100


Q ss_pred             CCCC-cccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcCCCCCCeEEEeccchhhhhhHHHHHHHHh
Q psy8225         195 AKSP-TEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLL  273 (479)
Q Consensus       195 ~~~~-~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~  273 (479)
                      .... .........+++++++|||||||.||+|+++|+++...+......+++..++++++.+|++|.+|+ ..++.++.
T Consensus       167 ~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~-~~~~~~l~  245 (540)
T PRK06164        167 PAPPAAAGERAADPDAGALLFTTSGTTSGPKLVLHRQATLLRHARAIARAYGYDPGAVLLAALPFCGVFGF-STLLGALA  245 (540)
T ss_pred             cCCcccccccCCCCCceEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEcCCchhHHHH-HHHHHHHh
Confidence            0000 000122346788999999999999999999999999888888888888999999999999999997 56788999


Q ss_pred             cCceEEecCCCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEE--e-cCCChhhHHHHHHHhCccee
Q psy8225         274 GGSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--G-NGLRPQVWEPFQKRFGLDRI  350 (479)
Q Consensus       274 ~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~--G-~~l~~~~~~~~~~~~~~~~v  350 (479)
                      .|+++++.+.+++..+++.|+++++|+++.+|+++..|.+.. .....++++|.+.  | .+...++.+++.+. +. ++
T Consensus       246 ~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~l~~l~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~-~~  322 (540)
T PRK06164        246 GGAPLVCEPVFDAARTARALRRHRVTHTFGNDEMLRRILDTA-GERADFPSARLFGFASFAPALGELAALARAR-GV-PL  322 (540)
T ss_pred             cCceEEecCCCCHHHHHHHHHHhCCeeecCCHHHHHHHHHhh-cccCCCcceeeeeeccCCcchHHHHHHHhhc-CC-ce
Confidence            999999999899999999999999999999999999998872 2334678888775  2 34556666666654 77 89


Q ss_pred             eeeccccccCcccccCCC------CCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecC
Q psy8225         351 CEFYGATEGNANLMNADG------KVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKES  424 (479)
Q Consensus       351 ~~~YG~tE~~~~~~~~~~------~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~  424 (479)
                      ++.||+||++..+.....      ...+.|.+.     .+++.++++|++++.          +++.|+.|||+++    
T Consensus       323 ~~~YG~tE~~~~~~~~~~~~~~~~~~~~~g~~~-----~~~~~~~i~d~~~~~----------~~~~g~~Gel~v~----  383 (540)
T PRK06164        323 TGLYGSSEVQALVALQPATDPVSVRIEGGGRPA-----SPEARVRARDPQDGA----------LLPDGESGEIEIR----  383 (540)
T ss_pred             ecceeeccccceeeccCCCCCCcceeccCcccc-----CCCeEEEEecCCCCc----------CCCCCCeeEEEEe----
Confidence            999999999866543221      122334432     136888899988776          5688999999998    


Q ss_pred             CcccccccccCcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         425 RAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       425 ~~~~~~~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                      |+ +++.||+++++.+.+.+.     .+|||+|||+|++|+||++++.||.||++
T Consensus       384 g~-~~~~gY~~~~~~t~~~~~-----~~~~~~TGDl~~~~~~g~l~~~GR~~~~i  432 (540)
T PRK06164        384 AP-SLMRGYLDNPDATARALT-----DDGYFRTGDLGYTRGDGQFVYQTRMGDSL  432 (540)
T ss_pred             cc-cccccccCCchhhhhccc-----CCCceecCCeEEEcCCceEEEEeecCCeE
Confidence            77 899999999888776654     27899999999999999999999999974

>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=1.5e-51  Score=422.51  Aligned_cols=403  Identities=22%  Similarity=0.257  Sum_probs=311.0

Q ss_pred             chhHHHHHHHhhcCCCccccEEE---Eeh-hhHHHHHHHHHHHHHc-CCCCCCEEEEEcCCchHHHHHHHHhhhcCceee
Q psy8225          47 TYARPLFVRTIREVPMTGAYKYT---VTF-QVEDHSNRIANFFKSK-GLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAA  121 (479)
Q Consensus        47 ~~l~~~l~~~~~~~p~~~a~~~~---~Ty-~l~~~~~~la~~L~~~-gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v  121 (479)
                      .++.++|.+++.++|+++|+++.   +|| ||.++++++|+.|.+. |+++||+|+++++|++++++++|||+++|++++
T Consensus        24 ~~~~~~l~~~~~~~p~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~~gi~~gd~V~i~~~n~~e~~~~~la~~~~G~v~v  103 (562)
T PRK12492         24 KSVVEVFERSCKKFADRPAFSNLGVTLSYAELERHSAAFAAYLQQHTDLVPGDRIAVQMPNVLQYPIAVFGALRAGLIVV  103 (562)
T ss_pred             CcHHHHHHHHHHhCCCCeeEecCCceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEe
Confidence            46889999999999999999876   999 9999999999999985 999999999999999999999999999999999


Q ss_pred             eecCCcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCCcceEEecCCCC-CCC------------------ccCCCc
Q psy8225         122 FINTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRR-KPQ------------------AKVLPS  182 (479)
Q Consensus       122 ~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~------------------~~~~~~  182 (479)
                      ++++..+.+++.++++.++++++++++.....+..+........++...... ...                  ......
T Consensus       104 ~~~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (562)
T PRK12492        104 NTNPLYTAREMRHQFKDSGARALVYLNMFGKLVQEVLPDTGIEYLIEAKMGDLLPAAKGWLVNTVVDKVKKMVPAYHLPQ  183 (562)
T ss_pred             ccCccCCHHHHHHHHhccCceEEEeccccchHHHHhhhccCceEEEeechhhccccccchhcccccccccccccccCCcc
Confidence            9999999999999999999999999875544333322211100111100000 000                  000001


Q ss_pred             cccccccCCcCCCCCCcccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcC---------CCC-CCeE
Q psy8225         183 TTLLDEELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTG---------LTS-DDVV  252 (479)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~---------~~~-~d~~  252 (479)
                      ...+++.+.........  ......+++++|+|||||||.||+|+++|+++...+......+.         ... ++++
T Consensus       184 ~~~~~~~~~~~~~~~~~--~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (562)
T PRK12492        184 AVPFKQALRQGRGLSLK--PVPVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQLGPDGQPLMKEGQEVM  261 (562)
T ss_pred             cccHHHHHhccCCCCCC--CCCCCcCCeEEEEeCCCCCCCCceEEEechhHHHHHHHHHHHHhcccccccccccCCCeEE
Confidence            11222222211111100  12345678999999999999999999999999776655443332         222 3577


Q ss_pred             EEeccchhhhhhHHHHHHHHhcCceEEecC-CCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEE--
Q psy8225         253 YTTLPLYHTAGGLLGIGQCLLGGSTVVIRS-KFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--  329 (479)
Q Consensus       253 ~~~~pl~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~--  329 (479)
                      ++.+|++|.+|+...++..+..|...++.. .+++..+++.++++++|++..+|+++..|.+........++++|.++  
T Consensus       262 ~~~~pl~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~g  341 (562)
T PRK12492        262 IAPLPLYHIYAFTANCMCMMVSGNHNVLITNPRDIPGFIKELGKWRFSALLGLNTLFVALMDHPGFKDLDFSALKLTNSG  341 (562)
T ss_pred             EEecchHHHHHHHHHHHHHhhcCceEEEecCCcCHHHHHHHHHHhCCceeeCcHHHHHHHHhCcCcccccccceeEEEec
Confidence            899999999998777777778888766553 56889999999999999999999999999887765555678899877  


Q ss_pred             ecCCChhhHHHHHHHhCcceeeeeccccccCcccccCC----CCCCcccccCccccCCCceeeEEeCCCCCCccccCCCc
Q psy8225         330 GNGLRPQVWEPFQKRFGLDRICEFYGATEGNANLMNAD----GKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGL  405 (479)
Q Consensus       330 G~~l~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~----~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~  405 (479)
                      |+++++++.++|.+.++. ++++.||+||++..+....    ..++++|+|++      +++++++|++ +.        
T Consensus       342 G~~~~~~~~~~~~~~~~~-~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~------~~~v~ivd~~-~~--------  405 (562)
T PRK12492        342 GTALVKATAERWEQLTGC-TIVEGYGLTETSPVASTNPYGELARLGTVGIPVP------GTALKVIDDD-GN--------  405 (562)
T ss_pred             cccCCHHHHHHHHHHhCC-ceeeccCccccCceeeecCCcccccCCccceecC------CCEEEEECCC-CC--------
Confidence            889999999999999998 9999999999986654322    23467777665      7899999964 44        


Q ss_pred             cccccCCCCceEEEEeecCCcccccccccCcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         406 CIPCKAEEPGILIGMIKESRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       406 ~~~~~~~~~Gel~v~~~~~~~~~~~~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                        ++++|+.|||+++    |+ .++.|||++++.+.+.|+     ++|||+|||+|++|++|+++|.||.||++
T Consensus       406 --~~~~g~~Gel~v~----g~-~~~~gY~~~~~~t~~~~~-----~~g~~~TGD~g~~~~~G~l~i~GR~~~~i  467 (562)
T PRK12492        406 --ELPLGERGELCIK----GP-QVMKGYWQQPEATAEALD-----AEGWFKTGDIAVIDPDGFVRIVDRKKDLI  467 (562)
T ss_pred             --CCCCCCceEEEEe----CC-ccccccccCchhhhhccc-----CCCceecCcEEEECCCCeEEEecccCCeE
Confidence              5688999999998    77 899999999887776553     37899999999999999999999999974

>PRK10946 entE enterobactin synthase subunit E; Provisional

Probab=100.00  E-value=1.6e-51  Score=419.83  Aligned_cols=393  Identities=17%  Similarity=0.200  Sum_probs=313.4

Q ss_pred             chhHHHHHHHhhcCCCccccEEE---Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCceeee
Q psy8225          47 TYARPLFVRTIREVPMTGAYKYT---VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAF  122 (479)
Q Consensus        47 ~~l~~~l~~~~~~~p~~~a~~~~---~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~  122 (479)
                      .++.++|+++++  |+++|+++.   +|| ||.++++++|..|.+.|+++|++|+++++|+++++++++||+++|+++++
T Consensus        25 ~~~~~~~~~~a~--p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~v~~~n~~~~~~~~la~~~~G~v~v~  102 (536)
T PRK10946         25 LPLTDILTRHAA--SDAIAVICGERQFSYRELNQASDNLACSLRRQGIKPGDTALVQLGNVAEFYITFFALLKLGVAPVN  102 (536)
T ss_pred             ccHHHHHHHhhC--CCCeEEEeCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCChHHHHHHHHHHHHcCeEEec
Confidence            357899999887  999999988   999 99999999999999999999999999999999999999999999998877


Q ss_pred             ecCCcchHHHHHHHHhccceEEEeChhhH-----HHHHHhhccCCcceEEecCCCCCCCccCCCccccccccCCcCCCCC
Q psy8225         123 INTNQRQHILIHSIKVAECKAIIYGAELS-----EALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKS  197 (479)
Q Consensus       123 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (479)
                      +.+.....++.++++.+++++++++....     .....+....+.++.+......        ....+.+.+.......
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~  174 (536)
T PRK10946        103 ALFSHQRSELNAYASQIEPALLIADRQHALFSDDDFLNTLVAEHSSLRVVLLLNDD--------GEHSLDDAINHPAEDF  174 (536)
T ss_pred             CCccccHHHHHHHHhhcCCCEEEEeccccccchHHHHHHHHhhCCCceEEEEecCC--------CCccHHHHhhCccccc
Confidence            77777788899999999999999975421     1222233333444443332211        1112222222221111


Q ss_pred             CcccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcCCCCCCeEEEeccchhhhhhHH-HHHHHHhcCc
Q psy8225         198 PTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLL-GIGQCLLGGS  276 (479)
Q Consensus       198 ~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~-~~~~~l~~G~  276 (479)
                      .   .....++++++++|||||||.||+|+++|+++...+......+++..++++++.+|++|.+++.. .++.++..|+
T Consensus       175 ~---~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~~~~~~~~~~~l~~g~  251 (536)
T PRK10946        175 T---ATPSPADEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICGFTPQTRYLCALPAAHNYPMSSPGALGVFLAGG  251 (536)
T ss_pred             c---cCCCCCCCeEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCceEEEecCccccccchhhhHHHHhhcCc
Confidence            1   12345788999999999999999999999999998888777888999999999999999988654 5677899999


Q ss_pred             eEEecCCCChhHHHHHHHHhcccEEEEehHHHHHHhcCC--CCCCCCCCceeEEE--ecCCChhhHHHHHHHhCcceeee
Q psy8225         277 TVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVP--EKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICE  352 (479)
Q Consensus       277 ~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~--~~~~~~l~~lr~~~--G~~l~~~~~~~~~~~~~~~~v~~  352 (479)
                      ++++.+.+++..+++.++++++|++..+|.++..|++..  ......++++|.++  |+++++++.+.+.+.++. ++++
T Consensus       252 ~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~v~~gg~~l~~~~~~~~~~~~g~-~~~~  330 (536)
T PRK10946        252 TVVLAPDPSATLCFPLIEKHQVNVTALVPPAVSLWLQAIAEGGSRAQLASLKLLQVGGARLSETLARRIPAELGC-QLQQ  330 (536)
T ss_pred             EEEECCCCCHHHHHHHHHHhCCcEEEeChHHHHHHHhhhcccCccccccceeEEEECCCCCCHHHHHHHHHhcCC-eEEE
Confidence            999988899999999999999999999999999988763  22233467888877  888999999999999998 9999


Q ss_pred             eccccccCcccccCC----CCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCccc
Q psy8225         353 FYGATEGNANLMNAD----GKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAES  428 (479)
Q Consensus       353 ~YG~tE~~~~~~~~~----~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~  428 (479)
                      .||+||++.......    ...+++|.|++     +++.++++|++ ++          +++.|+.|||+++    |+ .
T Consensus       331 ~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~-----~~~~v~i~d~~-~~----------~~~~g~~Gel~v~----g~-~  389 (536)
T PRK10946        331 VFGMAEGLVNYTRLDDSDERIFTTQGRPMS-----PDDEVWVADAD-GN----------PLPQGEVGRLMTR----GP-Y  389 (536)
T ss_pred             eecccccceeeecCCCccccccccCCcccC-----CCceEEEECCC-CC----------CCCCCCccEEEEe----cC-c
Confidence            999999764433221    23466777552     15778888844 44          5689999999998    77 8


Q ss_pred             ccccccCcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         429 HFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       429 ~~~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                      ++.||+++++.+.+.++     .+|||+|||+|++|+||++++.||.||++
T Consensus       390 ~~~GY~~~~~~t~~~~~-----~d~~~~TGDl~~~d~~G~l~~~gR~~d~i  435 (536)
T PRK10946        390 TFRGYYKSPQHNASAFD-----ANGFYCSGDLVSIDPDGYITVVGREKDQI  435 (536)
T ss_pred             cchhhcCCcccchhhcc-----cCCceecCceEEECCCCcEEEecccccee
Confidence            99999999877776554     37899999999999999999999999975

>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase

Probab=100.00  E-value=2.1e-51  Score=426.41  Aligned_cols=394  Identities=14%  Similarity=0.163  Sum_probs=293.7

Q ss_pred             cCCCccccEEE--------Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCceeeeecCCcch
Q psy8225          59 EVPMTGAYKYT--------VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQ  129 (479)
Q Consensus        59 ~~p~~~a~~~~--------~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~l~~~~~~  129 (479)
                      ..++++|+++.        +|| ||.+++.++|+.|+++|+++||+|+++++|++++++++|||+++|++++|+++.++.
T Consensus        96 ~~~~~~a~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~~n~~e~~~~~lA~~~~Gav~vp~~~~~~~  175 (652)
T TIGR01217        96 AAGTEPALLYVDETHEPAPVTWAELRRQVASLAAALRALGVRPGDRVSGYLPNIPQAVVAMLATASVGAIWSSCSPDFGA  175 (652)
T ss_pred             cCCCCeEEEEECCCCCeeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCeEEEecCCCCCH
Confidence            35788998884        999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccceEEEeChhh---------HHHHHHhhccCCcce-EEecCCCCCC--CccCCCccccccccCCcCCCCC
Q psy8225         130 HILIHSIKVAECKAIIYGAEL---------SEALTEVKDSIPGIS-LYAAGTRRKP--QAKVLPSTTLLDEELPEVSAKS  197 (479)
Q Consensus       130 ~~l~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  197 (479)
                      +++.+++++++++++|+++..         .+.+.++....+.++ ++++......  ..........+++++.......
T Consensus       176 ~~l~~~l~~~~~k~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (652)
T TIGR01217       176 RGVLDRFQQIEPKLLFTVDGYRYNGKEHDRRDKVAEVRKELPTLRAVVHIPYLGPRETEAPKIDGALDLEDFTAAAQAAE  255 (652)
T ss_pred             HHHHHHHHhcCCcEEEEccccccCCcccchHHHHHHHHhcCCCccEEEEEeCCCCcccccccccCcccHHHHHhcccCCC
Confidence            999999999999999997643         344444444444333 2222211000  0000011223444433211111


Q ss_pred             CcccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHH-HhhhhhhhcCCCCCCeEEEeccchhhhhhHHHHHHHHhcCc
Q psy8225         198 PTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMF-MAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGS  276 (479)
Q Consensus       198 ~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~-~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G~  276 (479)
                      ..  ......+++++|+|||||||.||||+++|.+++. ........+++.++|++++..|++|..+  ..++.++..|+
T Consensus       256 ~~--~~~~~~~d~~~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--~~~~~~l~~G~  331 (652)
T TIGR01217       256 LV--FEQLPFDHPLWILFSSGTTGLPKCIVHSAGGTLVQHLKEHGLHCDLGPGDRLFYYTTTGWMMW--NWLVSGLATGA  331 (652)
T ss_pred             CC--ceecCCCCCEEEEEcCCCCCCCCeEEecccHHHHHHHHHHHhccCCCCCcEEEEeCCcchhhh--HHHHHHHhcCc
Confidence            11  1234568999999999999999999999998654 4444455678899999999999999753  23457899999


Q ss_pred             eEEecCC----CChhHHHHHHHHhcccEEEEehHHHHHHhcCCC--CCCCCCCceeEEE--ecCCChhhHHHHHHHhCc-
Q psy8225         277 TVVIRSK----FSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPE--KPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGL-  347 (479)
Q Consensus       277 ~~v~~~~----~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~--~~~~~l~~lr~~~--G~~l~~~~~~~~~~~~~~-  347 (479)
                      ++++.+.    .++..+++.++++++|++..+|.+++.+.+...  ....++++||.++  |+++++++.+++.+.++. 
T Consensus       332 t~vl~~g~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~  411 (652)
T TIGR01217       332 TLVLYDGSPGFPATNVLWDIAERTGATLFGTSAKYVMACRKAGVHPARTHDLSALQCVASTGSPLPPDGFRWVYDEIKAD  411 (652)
T ss_pred             EEEEECCCCCCCCchHHHHHHHHhCCeEEecCHHHHHHHHhcCCCccccCChhheeEEEeecCCCCHHHHHHHHHHhCCC
Confidence            9998752    378899999999999999888888877765421  2334688999887  899999999999998864 


Q ss_pred             ceeeeeccccccCcccc-cCC---CCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeec
Q psy8225         348 DRICEFYGATEGNANLM-NAD---GKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKE  423 (479)
Q Consensus       348 ~~v~~~YG~tE~~~~~~-~~~---~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~  423 (479)
                      ..+.+.||+||+++... ..+   ..++++|.|.+      +++++++|++ |+          ++ +|+.|||+++   
T Consensus       412 ~~~~~~yG~TE~~~~~~~~~~~~~~~~g~~g~p~~------g~~v~ivd~~-g~----------~~-~g~~GEl~v~---  470 (652)
T TIGR01217       412 VWLASISGGTDICSCFAGANPTLPVHIGEIQAPGL------GTAVQSWDPE-GK----------PV-TGEVGELVCT---  470 (652)
T ss_pred             ceEEeccCHHHHhccccCCCCCCCCcCCccCCCcC------CCceEEECCC-CC----------CC-CCCccEEEEe---
Confidence            25678999999753332 222   23456666544      7889999854 44          34 4889999998   


Q ss_pred             CCc-ccccccccCcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         424 SRA-ESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       424 ~~~-~~~~~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                       +| ++++.|||++++.++ ....+|...+|||+|||+|++|+||+|+|+||.||++
T Consensus       471 -gp~p~~~~gy~~~~~~t~-~~~~~~~~~~g~~~tGDlg~~d~dG~l~i~GR~dd~I  525 (652)
T TIGR01217       471 -NPMPSMPIRFWNDPDGSK-YRDAYFDTYPGVWRHGDWITLTPRGGIVIHGRSDSTL  525 (652)
T ss_pred             -cCCCccccceeCCCccch-hHHhhhcCCCCEEEcCCcEEECCCCcEEEEecccCeE
Confidence             54 268999999886543 1122333347899999999999999999999999974

This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.

>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=4.5e-51  Score=418.82  Aligned_cols=405  Identities=20%  Similarity=0.234  Sum_probs=313.5

Q ss_pred             ccchhHHHHHHHhhcCCCccccEEE---Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCcee
Q psy8225          45 LPTYARPLFVRTIREVPMTGAYKYT---VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVA  120 (479)
Q Consensus        45 ~~~~l~~~l~~~~~~~p~~~a~~~~---~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~  120 (479)
                      .+.++.++|.++++++|+++|+++.   +|| ||.++++++|..|.+.|+++||+|+++++|++++++++|||+++|+++
T Consensus        21 ~~~~i~~~l~~~a~~~p~~~a~~~~~~~lTy~~l~~~~~~~a~~L~~~gi~~gd~V~i~~~n~~~~~~~~la~~~~G~~~  100 (557)
T PRK07059         21 QYPSLADLLEESFRQYADRPAFICMGKAITYGELDELSRALAAWLQSRGLAKGARVAIMMPNVLQYPVAIAAVLRAGYVV  100 (557)
T ss_pred             CCCCHHHHHHHHHHHcCCCceEEEcCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHhcCeEE
Confidence            3467999999999999999999987   999 999999999999999999999999999999999999999999999999


Q ss_pred             eeecCCcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCCcceEEecCCCCCCC------------------ccCCCc
Q psy8225         121 AFINTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQ------------------AKVLPS  182 (479)
Q Consensus       121 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~  182 (479)
                      +|++|..+.+++.++++.++++++|++......+.+.....+...+++........                  .-....
T Consensus       101 v~v~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (557)
T PRK07059        101 VNVNPLYTPRELEHQLKDSGAEAIVVLENFATTVQQVLAKTAVKHVVVASMGDLLGFKGHIVNFVVRRVKKMVPAWSLPG  180 (557)
T ss_pred             eccCcccCHHHHHHHHHccCceEEEEchhhHHHHHHhhcccCCceeEEecccccccccccccccccccccccccccCCCC
Confidence            99999999999999999999999999887665555543332211122111000000                  000001


Q ss_pred             cccccccCCcCCCCCCcccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhc----CC---CCCCeEEEe
Q psy8225         183 TTLLDEELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQT----GL---TSDDVVYTT  255 (479)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~----~~---~~~d~~~~~  255 (479)
                      ...+++.+.........  .....++++++++|||||||.||+|+++|.+++.++......+    ..   .....+++.
T Consensus       181 ~~~~~~~~~~~~~~~~~--~~~~~~~~~a~il~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (557)
T PRK07059        181 HVRFNDALAEGARQTFK--PVKLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQPAFEKKPRPDQLNFVCA  258 (557)
T ss_pred             cccHHHHhhccCCCCCC--CCCCCcCceEEEEeCCCCCCCCcEEEeecHHHHHHHHHHhhhhcccccccCCCCCcEEEEe
Confidence            11122222211111111  1334678899999999999999999999999986654332211    11   123567889


Q ss_pred             ccchhhhhhHHHHHHHHhcCceEEecC-CCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEE--ecC
Q psy8225         256 LPLYHTAGGLLGIGQCLLGGSTVVIRS-KFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNG  332 (479)
Q Consensus       256 ~pl~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~--G~~  332 (479)
                      +|++|.+++....+.++..|++.++.+ ..++..+++.++++++|.+.++|+++..+.+........++++|.++  |++
T Consensus       259 ~pl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~gg~~  338 (557)
T PRK07059        259 LPLYHIFALTVCGLLGMRTGGRNILIPNPRDIPGFIKELKKYQVHIFPAVNTLYNALLNNPDFDKLDFSKLIVANGGGMA  338 (557)
T ss_pred             CCcHHHHHHHHHHHHHHhhcceEEEecCCcCHHHHHHHHHHhCCeeeecCHHHHHHHHcCcCcCcCCchhheEEEecccc
Confidence            999999987666677778888766655 45888999999999999999999999999887665555677888876  677


Q ss_pred             CChhhHHHHHHHhCcceeeeeccccccCcccccCC----CCCCcccccCccccCCCceeeEEeCCCCCCccccCCCcccc
Q psy8225         333 LRPQVWEPFQKRFGLDRICEFYGATEGNANLMNAD----GKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIP  408 (479)
Q Consensus       333 l~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~----~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~  408 (479)
                      +++.+.++|.+.++. ++++.||+||++.++....    ..++++|.|++      +++++++|++ ++          +
T Consensus       339 ~~~~~~~~~~~~~~~-~~~~~YG~tE~~~~~~~~~~~~~~~~~~vG~p~~------g~~v~i~d~~-~~----------~  400 (557)
T PRK07059        339 VQRPVAERWLEMTGC-PITEGYGLSETSPVATCNPVDATEFSGTIGLPLP------STEVSIRDDD-GN----------D  400 (557)
T ss_pred             CCHHHHHHHHHHhCC-CeeeccccccccchhhcCCCCCCCcCCcccCccC------CcEEEEECCC-CC----------C
Confidence            999999999999998 8999999999987654322    23456777655      7899988854 44          5


Q ss_pred             ccCCCCceEEEEeecCCcccccccccCcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         409 CKAEEPGILIGMIKESRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       409 ~~~~~~Gel~v~~~~~~~~~~~~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                      ++.|+.|||+++    |+ .++.||+++++.+.+.+.     .+|||+|||+|++++||++++.||+||++
T Consensus       401 ~~~g~~Gel~v~----g~-~~~~gY~~~~~~~~~~~~-----~~g~~~TGDl~~~~~~g~~~~~GR~~~~i  461 (557)
T PRK07059        401 LPLGEPGEICIR----GP-QVMAGYWNRPDETAKVMT-----ADGFFRTGDVGVMDERGYTKIVDRKKDMI  461 (557)
T ss_pred             CCCCCceEEEEe----CC-ccchhhhcCHHHHhhhcc-----cCCceecCcEEEEcCCCcEEEecccccce
Confidence            688999999998    77 899999999887776543     27999999999999999999999999974

>PRK07868 acyl-CoA synthetase; Validated

Probab=100.00  E-value=5.7e-51  Score=438.28  Aligned_cols=411  Identities=22%  Similarity=0.332  Sum_probs=310.6

Q ss_pred             ccchhHHHHHHHhhcCCCccccEEE---Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCcee
Q psy8225          45 LPTYARPLFVRTIREVPMTGAYKYT---VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVA  120 (479)
Q Consensus        45 ~~~~l~~~l~~~~~~~p~~~a~~~~---~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~  120 (479)
                      ...++.++|.++++++|+++|+++.   +|| ||.++++++|++|.++|+++||+|+|+++|+++++++++||+++|+++
T Consensus       445 ~~~sl~~ll~~~a~~~pd~~Al~~~~~~lTY~eL~~ra~rlA~~L~~~Gv~~Gd~VaI~~~n~~e~v~a~lA~~~aGav~  524 (994)
T PRK07868        445 TRISLGRIIAEQARDAPKGEFLLFDGRVHTYEAVNRRINNVVRGLIAVGVRQGDRVGVLMETRPSALVAIAALSRLGAVA  524 (994)
T ss_pred             CCccHHHHHHHHHHHCCCCeEEEeCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCEE
Confidence            3366899999999999999999986   999 999999999999999999999999999999999999999999999999


Q ss_pred             eeecCCcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCCcceEEecCCCCCCCccCCC--ccccccccCCcCCCCCC
Q psy8225         121 AFINTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLP--STTLLDEELPEVSAKSP  198 (479)
Q Consensus       121 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  198 (479)
                      +|++|.   +++.++++.+++++||++.+....+...     ..++++++...........  ....+++..........
T Consensus       525 vpl~p~---~~l~~il~~s~~~~li~~~~~~~~~~~~-----~~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  596 (994)
T PRK07868        525 VLMPPD---TDLAAAVRLGGVTEIITDPTNLEAARQL-----PGRVLVLGGGESRDLDLPDDADVIDMEKIDPDAVELPG  596 (994)
T ss_pred             EEeCCc---hhHHHHHhccCCeEEEEChHHHHHHHhc-----CceEEEecCCccccccCCcchhhhhhhhcCcccccCCc
Confidence            999985   6899999999999999987665544321     1234443321100000000  01111111111000000


Q ss_pred             cccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcCCCCCCeEEEeccchhhhhhHHHHHHHHhcCceE
Q psy8225         199 TEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTV  278 (479)
Q Consensus       199 ~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G~~~  278 (479)
                      ........++++++|+|| ||||.||++.++|.+...........+++..+|++++.+|++|.+|+...++.++..|+++
T Consensus       597 ~~~~~~~~~dd~a~IiyT-gStgtpKpk~vt~~~~~~~~~~~~~~~~l~~~d~~L~~~Pl~h~~gl~~~l~~~l~gG~~v  675 (994)
T PRK07868        597 WYRPNPGLARDLAFIAFS-TAGGELVAKQITNYRWALSAFGTASAAALDRRDTVYCLTPLHHESGLLVSLGGAVVGGSRI  675 (994)
T ss_pred             ccCCCCCCCCccEEEEEe-CCCCCcCcEEEehHHHHHHHHhhhhhcCCCCCCeEEEecChHHHhHHHHHHHHHhccceEE
Confidence            000011235789999998 6888888888888776555555555677889999999999999999876677778888888


Q ss_pred             EecCCCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEEecCCChhhHHHHHHHhCcceeeeeccccc
Q psy8225         279 VIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMIGNGLRPQVWEPFQKRFGLDRICEFYGATE  358 (479)
Q Consensus       279 v~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~G~~l~~~~~~~~~~~~~~~~v~~~YG~tE  358 (479)
                      ++.+.+++..+++.|+++++|++.++|++++.|++........++++|.++|+++++++.+++.+.++..++++.||+||
T Consensus       676 vl~~~~~~~~~~~~I~~~~vT~~~~~Ps~l~~L~~~~~~~~~~~~slr~~~g~gl~~~l~~~~~~~~~~~~l~~~YG~TE  755 (994)
T PRK07868        676 ALSRGLDPDRFVQEVRQYGVTVVSYTWAMLREVVDDPAFVLHGNHPVRLFIGSGMPTGLWERVVEAFAPAHVVEFFATTD  755 (994)
T ss_pred             EecCCCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCCccCCCCceEEEecCCCCHHHHHHHHHHhCchheeeeeeccc
Confidence            88888999999999999999999999999999988755444457799988888899999999999998448999999999


Q ss_pred             cCcccccC-CCCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCcccccccccCcc
Q psy8225         359 GNANLMNA-DGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNGYADKK  437 (479)
Q Consensus       359 ~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~gY~~~~  437 (479)
                      ++..+... ..+++++|+|+|   +...+++..+|+++++.+.|++|...+++.|+.|||+++    ++ .    |++.+
T Consensus       756 ~~~~~~~~~~~~~~svG~p~p---g~~~v~i~~~d~~~g~li~d~~G~~~~~~~ge~Gel~~~----~~-~----~~~p~  823 (994)
T PRK07868        756 GQAVLANVSGAKIGSKGRPLP---GAGRVELAAYDPEHDLILEDDRGFVRRAEVNEVGVLLAR----AR-G----PIDPT  823 (994)
T ss_pred             ccccccccCCCCCcccCCccC---CCCceeEEEecCcCCceeecCCceEEEcCCCCceEEEEe----cC-C----CCChh
Confidence            87554432 245678888766   111134444577888888888886667899999999988    44 2    44432


Q ss_pred             hhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         438 ASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       438 ~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                      .+   .+..+|.+++|||+|||+|++|+||+|+|+||+||++
T Consensus       824 ~t---~~~~~~~~~dgw~~TGDlg~~d~dG~l~~~GR~dd~I  862 (994)
T PRK07868        824 AS---VKRGVFAPADTWISTEYLFRRDDDGDYWLVDRRGSVI  862 (994)
T ss_pred             hh---hHhcccccCCEEEeccceEEEcCCCCEEEeccCCCEE
Confidence            21   2222344468999999999999999999999999985

>TIGR02262 benz_CoA_lig benzoate-CoA ligase family

Probab=100.00  E-value=6.6e-51  Score=413.24  Aligned_cols=394  Identities=21%  Similarity=0.298  Sum_probs=318.7

Q ss_pred             chhHHHHHHH-hhcCCCccccEEE---Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCceee
Q psy8225          47 TYARPLFVRT-IREVPMTGAYKYT---VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAA  121 (479)
Q Consensus        47 ~~l~~~l~~~-~~~~p~~~a~~~~---~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v  121 (479)
                      ++..++++++ ++.+|+++|++..   +|| ||.++++++|+.|.+.|+++|++|+++++|+++|+++++||+++|++++
T Consensus         4 ~~~~~~~~~~~~~~~p~~~a~~~~~~~~ty~~l~~~~~~~a~~L~~~g~~~g~~v~l~~~~~~~~~~~~~a~~~~G~~~v   83 (508)
T TIGR02262         4 NAAEDLLDRNVVEGRGGKTAFIDDISSLSYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIAFLGAIRAGIVPV   83 (508)
T ss_pred             hHHHHHHHHHHhcccCCceEEEeCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEe
Confidence            4567888887 6779999999887   999 9999999999999999999999999999999999999999999999999


Q ss_pred             eecCCcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCCcce-EEecCCCCCCCccCCCccccccccCCcCCCCCCcc
Q psy8225         122 FINTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGIS-LYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTE  200 (479)
Q Consensus       122 ~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (479)
                      |+++..+.+++.++++.+++++++++......+.+.....+... ++..+....       ....+.+..........  
T Consensus        84 ~l~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~--  154 (508)
T TIGR02262        84 ALNTLLTADDYAYMLEDSRARVVFVSGELLPVIKAALGKSPHLEHRVVVGRPEA-------GEVQLAELLATESEQFK--  154 (508)
T ss_pred             eccCCCCHHHHHHHHHhcCCeEEEEchhhHHHHHHHHhcCCCccEEEEeCCCCc-------ccccHHHHhhcCCCccC--
Confidence            99999999999999999999999999877766666555444333 222222110       11122222211111111  


Q ss_pred             cccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhh-hhhhcCCCCCCeEEEeccchhhhhhHHHHHHHHhcCceEE
Q psy8225         201 DIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAIS-GRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVV  279 (479)
Q Consensus       201 ~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~-~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G~~~v  279 (479)
                       .....++++++++|||||||.||+|+++|+++...+.. ....++++.+|++++.+|++|.+++...+..++..|++++
T Consensus       155 -~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~l~~G~~~~  233 (508)
T TIGR02262       155 -PAATQADDPAFWLYSSGSTGMPKGVVHTHSNPYWTAELYARNTLGIREDDVVFSAAKLFFAYGLGNALTFPMSVGATTV  233 (508)
T ss_pred             -CCCCCCCCcEEEEeCCCCCCCCcEEEEechhHHHHHHHHhHHhcCCCCCCEEEEcCchHHHHHHHHHHHHHHHcCceEE
Confidence             12345688999999999999999999999999876654 3456678999999999999999998777778899999988


Q ss_pred             ecC-CCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEE--ecCCChhhHHHHHHHhCcceeeeeccc
Q psy8225         280 IRS-KFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFYGA  356 (479)
Q Consensus       280 ~~~-~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~--G~~l~~~~~~~~~~~~~~~~v~~~YG~  356 (479)
                      +.+ .+++..+++.|.++++|.+.++|+++..+.+..........++|.++  |+++++++.+.|.+.++. ++++.||+
T Consensus       234 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~~~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~-~v~~~YG~  312 (508)
T TIGR02262       234 LMGERPTPDAVFDRLRRHQPTIFYGVPTLYAAMLADPNLPAEDQVRLRLCTSAGEALPAEVGQRWQARFGV-DIVDGIGS  312 (508)
T ss_pred             EeCCCCCHHHHHHHHHHHCCcEEecchHHHHHHhcCccccccccccceeEEEcCCCCCHHHHHHHHHHhCC-chhhCccc
Confidence            866 46899999999999999999999999888776544334567888766  889999999999999998 99999999


Q ss_pred             cccCcccccC---CCCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCcccccccc
Q psy8225         357 TEGNANLMNA---DGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNGY  433 (479)
Q Consensus       357 tE~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~gY  433 (479)
                      ||++.+....   +...+++|+|++      ++.++++| +++.          ++++|+.|||+++    |+ .++.||
T Consensus       313 tE~~~~~~~~~~~~~~~~~~G~~~~------g~~v~i~d-~~~~----------~~~~g~~Gel~i~----~~-~~~~gY  370 (508)
T TIGR02262       313 TEMLHIFLSNLPGDVRYGTSGKPVP------GYRLRLVG-DGGQ----------DVAAGEPGELLIS----GP-SSATMY  370 (508)
T ss_pred             cccCceeecCCccCCCCCCcCCCCC------CcEEEEEC-CCCC----------CCCCCCeeEEEEe----cC-cccccc
Confidence            9998654422   223456676554      78888888 4455          5688999999998    77 899999


Q ss_pred             cCcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         434 ADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       434 ~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                      +++++.+...+.      ++||+|||++++++||.+++.||.||++
T Consensus       371 ~~~~~~~~~~~~------~~~~~TGD~~~~~~~g~~~~~gR~~d~i  410 (508)
T TIGR02262       371 WNNRAKTRDTFQ------GEWTRSGDKYVRNDDGSYTYAGRTDDML  410 (508)
T ss_pred             CCCHHHhHhhhh------cCceeccceEEEcCCccEEEecccccee
Confidence            999887776654      7899999999999999999999999974

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases.

>PRK07008 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=4.5e-51  Score=416.83  Aligned_cols=400  Identities=18%  Similarity=0.220  Sum_probs=311.5

Q ss_pred             ccchhHHHHHHHhhcCCCccccEEE-------Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhc
Q psy8225          45 LPTYARPLFVRTIREVPMTGAYKYT-------VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKI  116 (479)
Q Consensus        45 ~~~~l~~~l~~~~~~~p~~~a~~~~-------~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~  116 (479)
                      .|.++.++|+..++.+|+..++.+.       +|| ||.++++++|++|.+.|+++||+|+++++|+++++++++||+++
T Consensus         8 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~~d~v~i~~~~~~~~~~~~la~~~~   87 (539)
T PRK07008          8 MPLLISSLIAHAARHAGDTEIVSRRVEGDIHRYTYRDCERRAKQLAQALAALGVEPGDRVGTLAWNGYRHLEAYYGVSGS   87 (539)
T ss_pred             CCCCHHHHHHHHHhhCCCceEEEeeccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhc
Confidence            5677999999999999999888742       899 99999999999999999999999999999999999999999999


Q ss_pred             CceeeeecCCcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCCcceEEe-cCCCCCCCccCCCccccccccCCcCCC
Q psy8225         117 GVVAAFINTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYA-AGTRRKPQAKVLPSTTLLDEELPEVSA  195 (479)
Q Consensus       117 G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (479)
                      |++++|++|.++.+++.++++.+++++++++.+..+.+.++....+.++.+. .......... ......++++......
T Consensus        88 G~~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~  166 (539)
T PRK07008         88 GAVCHTINPRLFPEQIAYIVNHAEDRYVLFDLTFLPLVDALAPQCPNVKGWVAMTDAAHLPAG-STPLLCYETLVGAQDG  166 (539)
T ss_pred             CcEEeecccccCHHHHHHHHhccCCcEEEEcchhHHHHHHHHhhCCCceEEEEEccCCccccC-CcccccHHHHhcccCC
Confidence            9999999999999999999999999999999877766655544444443322 2211110000 0112334443322111


Q ss_pred             CCCcccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHh--hhhhhhcCCCCCCeEEEeccchhhhhhHHHHHHHHh
Q psy8225         196 KSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMA--ISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLL  273 (479)
Q Consensus       196 ~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~--~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~  273 (479)
                      ...   .....++++++++|||||||.||+|++||++++...  ......+++..+|++++.+|++|.+++. .++.++.
T Consensus       167 ~~~---~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~-~~~~~l~  242 (539)
T PRK07008        167 DYD---WPRFDENQASSLCYTSGTTGNPKGALYSHRSTVLHAYGAALPDAMGLSARDAVLPVVPMFHVNAWG-LPYSAPL  242 (539)
T ss_pred             CcC---cccCCcccceEEEECCCCCCCCcEEEEecHHHHHHHHHhhcccccCCCCCceEEecCchHHhhhHH-HHHHHHh
Confidence            111   123456789999999999999999999999986432  2333466788899999999999988753 3456788


Q ss_pred             cCceEEecC-CCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEE--ecCCChhhHHHHHHHhCccee
Q psy8225         274 GGSTVVIRS-KFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRI  350 (479)
Q Consensus       274 ~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~--G~~l~~~~~~~~~~~~~~~~v  350 (479)
                      .|+++++.+ .+++..+++.++++++|++.++|+++..+.+........++++|.++  |+++++++.+++.+.++. .+
T Consensus       243 ~G~~~~~~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~-~l  321 (539)
T PRK07008        243 TGAKLVLPGPDLDGKSLYELIEAERVTFSAGVPTVWLGLLNHMREAGLRFSTLRRTVIGGSACPPAMIRTFEDEYGV-EV  321 (539)
T ss_pred             cCceEEEecCCcCHHHHHHHHHHcCCEEEEechHHHHHHHhcccccCCCcccceEEEEcCCCCCHHHHHHHHHHhCC-ce
Confidence            999998864 67899999999999999999999999999887666556678899876  889999999999999998 99


Q ss_pred             eeeccccccCcccccCC--------------CCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCce
Q psy8225         351 CEFYGATEGNANLMNAD--------------GKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGI  416 (479)
Q Consensus       351 ~~~YG~tE~~~~~~~~~--------------~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Ge  416 (479)
                      ++.||+||++..+....              ....++|+|+|      +++++++|++ +..+        +...++.||
T Consensus       322 ~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~p------g~~~~i~d~~-~~~~--------~~~~~~~Ge  386 (539)
T PRK07008        322 IHAWGMTEMSPLGTLCKLKWKHSQLPLDEQRKLLEKQGRVIY------GVDMKIVGDD-GREL--------PWDGKAFGD  386 (539)
T ss_pred             ecccccccccccceecccccccccCCchhhhhhcccCCcccc------ceEEEEECCC-CCcc--------CCCCCcceE
Confidence            99999999986543211              01234565554      7999999864 4422        222336799


Q ss_pred             EEEEeecCCcccccccccCcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         417 LIGMIKESRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       417 l~v~~~~~~~~~~~~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                      |+++    |+ .++.||++++..   .    +.  +|||+|||+|++|+||++++.||.||++
T Consensus       387 i~v~----g~-~~~~gy~~~~~~---~----~~--~g~~~TGD~~~~~~dg~l~~~GR~~d~i  435 (539)
T PRK07008        387 LQVR----GP-WVIDRYFRGDAS---P----LV--DGWFPTGDVATIDADGFMQITDRSKDVI  435 (539)
T ss_pred             EEEe----CC-ccchhhcCChhh---h----hc--CCCcccCceEEEcCCCcEEEeecccCEE
Confidence            9998    77 899999998732   1    11  6899999999999999999999999974

>TIGR03205 pimA dicarboxylate--CoA ligase PimA

Probab=100.00  E-value=1.1e-50  Score=414.54  Aligned_cols=404  Identities=19%  Similarity=0.220  Sum_probs=310.2

Q ss_pred             ccchhHHHHHHHhhcCCCccccEEE---Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCcee
Q psy8225          45 LPTYARPLFVRTIREVPMTGAYKYT---VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVA  120 (479)
Q Consensus        45 ~~~~l~~~l~~~~~~~p~~~a~~~~---~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~  120 (479)
                      .+.++.++|+++++.+|+++|+.+.   +|| ||.++++++|++|.+.|+++||+|+++++|+++++++++||+++|+++
T Consensus        19 ~~~~~~~~~~~~~~~~p~~~a~~~~~~~~ty~el~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~~G~~~   98 (541)
T TIGR03205        19 ARGTLPDLLSKAAADYGPRPALEFRDRPITYTELEAMAETAAAALLRAGYGKDASVALYLGNTPDHPINFFGALKAGARV   98 (541)
T ss_pred             CCCCHHHHHHHHHHHcCCCceEEECCcEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHhcCeEE
Confidence            3567999999999999999999886   999 999999999999999999999999999999999999999999999999


Q ss_pred             eeecCCcchHHHHHHHHhccceEEEeChhh--HHHHHHhhccCCcceEEecCCCCCCCc-------cCCCccccccccCC
Q psy8225         121 AFINTNQRQHILIHSIKVAECKAIIYGAEL--SEALTEVKDSIPGISLYAAGTRRKPQA-------KVLPSTTLLDEELP  191 (479)
Q Consensus       121 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~  191 (479)
                      +|++|..+.+++.++++.++++++|++...  ...+.+........++++.........       ........+++++.
T Consensus        99 v~l~~~~~~~~l~~~i~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (541)
T TIGR03205        99 VHLSPLDGERALSHKLSDSGARLLITSDLAALLPMALKFLEKGLLDRLIVCEDDNWGKVGTPQAPIPADPRIVTYADFVK  178 (541)
T ss_pred             EecCCCCCHHHHHHHHhhcCceEEEEeCchhhhHHHHHhhhcccceEEEEecccccccccccccccCCCcccccHHHHHh
Confidence            999999999999999999999999997531  122222111111112222221110000       00011222333332


Q ss_pred             cCCCCCCcccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhh-----hcCCCCCCeEEEeccchhhhhhHH
Q psy8225         192 EVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRY-----QTGLTSDDVVYTTLPLYHTAGGLL  266 (479)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~-----~~~~~~~d~~~~~~pl~h~~g~~~  266 (479)
                      ......   ......++++++++|||||||.||+|+++|.++.........     .......+++++.+|++|.+++..
T Consensus       179 ~~~~~~---~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~  255 (541)
T TIGR03205       179 GAAAPA---EWPAVTPDDVALLQYTGGTTGLPKGAMLTHGNLTSAVSIYDVWGKPSRATRGDVERVICVLPLFHIYALTV  255 (541)
T ss_pred             cCCCCC---CCCCCCccCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHhhcccccccCCCCceEEEeccHHHHHHHHH
Confidence            211111   112345678999999999999999999999998765432211     112234578999999999999877


Q ss_pred             HHHHHHhcCceEEecCCCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEE--ecCCChhhHHHHHHH
Q psy8225         267 GIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKR  344 (479)
Q Consensus       267 ~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~--G~~l~~~~~~~~~~~  344 (479)
                      .++.++..|+++++...+++..+++.|+++++|++.++|+++..|.+........++++|.++  |+++++++.+++.+.
T Consensus       256 ~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~i~~gg~~~~~~~~~~~~~~  335 (541)
T TIGR03205       256 ILLRSLRRGDLISLHQRFDVAAVFRDIEEKRATVFPGVPTMWIALANDPSLEKRDLSSLATIGSGGAPLPVEVANFFERK  335 (541)
T ss_pred             HHHHHHhcCCEEEecCCCCHHHHHHHHHHcCCeEeechHHHHHHHHhCccccccCccccceEEEccccCCHHHHHHHHHH
Confidence            788899999999988888999999999999999999999999998876544444567888877  888999999999998


Q ss_pred             hCcceeeeeccccccCcccccC----CCCCCcccccCccccCCCceeeEEeCC-CCCCccccCCCccccccCCCCceEEE
Q psy8225         345 FGLDRICEFYGATEGNANLMNA----DGKVGAVGYIPYIAIPFYPVGLIKCDP-ETSEPIRNKDGLCIPCKAEEPGILIG  419 (479)
Q Consensus       345 ~~~~~v~~~YG~tE~~~~~~~~----~~~~~~~g~~~~~~~~~~~~~~~i~d~-~~~~~i~~~~g~~~~~~~~~~Gel~v  419 (479)
                      ++. ++++.||+||++..+...    ...++++|.+++      ++.+++++. ++++          +++.|+.|||++
T Consensus       336 ~~~-~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~~~~------~~~~~v~~~d~~~~----------~~~~g~~Gel~v  398 (541)
T TIGR03205       336 TGL-KLKSGWGMTETCSPGTGHPPEGPDKPGSIGLMLP------GIELDVVSLDDPTK----------VLPPGEVGELRI  398 (541)
T ss_pred             hCC-CeecccccccCCcccccCCCCCCCCCCCcceecc------CceeEEEecCCCCc----------cCCCCCeeEEEE
Confidence            998 899999999998665432    234567777654      455555431 3343          568899999999


Q ss_pred             EeecCCcccccccccCcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         420 MIKESRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       420 ~~~~~~~~~~~~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                      +    |+ +++.||+++++.+++.+.      ++||+|||++++++||++++.||.||++
T Consensus       399 ~----~~-~~~~gy~~~~~~~~~~~~------~~~~~TGD~~~~~~~g~l~i~GR~~~~i  447 (541)
T TIGR03205       399 R----GP-NVTRGYWNRPEESAEAFV------GDRFLTGDIGYMDTDGYFFLVDRKKDMI  447 (541)
T ss_pred             e----cC-CccccccCChhhhHhhhc------cCCcccCceEEEcCCceEEEEccccCeE
Confidence            8    77 899999999887776654      6799999999999999999999999975

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids.

>PRK09088 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.4e-51  Score=413.35  Aligned_cols=370  Identities=18%  Similarity=0.245  Sum_probs=300.8

Q ss_pred             HHHhhcCCCccccEEE-----Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCceeeeecCCc
Q psy8225          54 VRTIREVPMTGAYKYT-----VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQ  127 (479)
Q Consensus        54 ~~~~~~~p~~~a~~~~-----~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~l~~~~  127 (479)
                      +.+++.+|+++|+.+.     +|| |+.++++++|..|.+.|+++||+|+++++|++++++++|||+++|++++|+++..
T Consensus         2 ~~~a~~~p~~~a~~~~~~~~~~ty~~l~~~v~~~a~~l~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~~~~~~   81 (488)
T PRK09088          2 AFHARLQPQRLAAVDLALGRRWTYAELDALVGRLAAVLRRRGCVDGERLAVLARNSVWLVALHFACARVGAIYVPLNWRL   81 (488)
T ss_pred             chhhhhCCCceEEEecCCCcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEEeeCccC
Confidence            4567889999999862     999 9999999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHhccceEEEeChhhHHHHHHhhccCCcceEEecCCCCCCCccCCCccccccccCCcCCCCCCcccccCCCC
Q psy8225         128 RQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTEDIKKNKP  207 (479)
Q Consensus       128 ~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (479)
                      +.+++.++++.++++++|+++.....      ..   ..                 ..++++........... ......
T Consensus        82 ~~~~~~~~~~~~~~~~ii~~~~~~~~------~~---~~-----------------~~~~~~~~~~~~~~~~~-~~~~~~  134 (488)
T PRK09088         82 SASELDALLQDAEPRLLLGDDAVAAG------RT---DV-----------------EDLAAFIASADALEPAD-TPSIPP  134 (488)
T ss_pred             CHHHHHHHHHhCCCCEEEEcchhhcc------cc---cc-----------------cchhhhhhhcccccccc-CCCCCC
Confidence            99999999999999999997643210      00   00                 00111111000000000 022346


Q ss_pred             CCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcCCCCCCeEEEeccchhhhhhHHHHHHHHhcCceEEecCCCChh
Q psy8225         208 SDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSAS  287 (479)
Q Consensus       208 ~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~  287 (479)
                      +++++++|||||||.||+|.++|+++...+........+..+|++++.+|++|.+|++..+..++..|+++++.+.+++.
T Consensus       135 ~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~g~~~~~~~~~~~~  214 (488)
T PRK09088        135 ERVSLILFTSGTSGQPKGVMLSERNLQQTAHNFGVLGRVDAHSSFLCDAPMFHIIGLITSVRPVLAVGGSILVSNGFEPK  214 (488)
T ss_pred             CCceEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEecchHHHHHHHHHHHHHHhcCCEEEEcCCCCHH
Confidence            78999999999999999999999999887777666667888999999999999999888888899999999998888999


Q ss_pred             HHHHHHH--HhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEE--ecCCChhhHHHHHHHhCcceeeeeccccccCccc
Q psy8225         288 NFWKDCI--KYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFYGATEGNANL  363 (479)
Q Consensus       288 ~~~~~i~--~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~--G~~l~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~  363 (479)
                      .++..+.  ++++|+++.+|++++.+.+........++++|.++  |++++.+..+.+.+. +. ++++.||+||++.+.
T Consensus       215 ~~~~~~~~~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~-g~-~v~~~YG~TE~~~~~  292 (488)
T PRK09088        215 RTLGRLGDPALGITHYFCVPQMAQAFRAQPGFDAAALRHLTALFTGGAPHAAEDILGWLDD-GI-PMVDGFGMSEAGTVF  292 (488)
T ss_pred             HHHHHHHhhccCCcEEeeHHHHHHHHHhCcCcCccccccceEEEecCCCCCHHHHHHHHHh-CC-ceeeeeccccccccc
Confidence            9998886  48999999999999999877654445678899877  788988888887754 77 899999999998653


Q ss_pred             cc-C-----CCCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCcccccccccCcc
Q psy8225         364 MN-A-----DGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNGYADKK  437 (479)
Q Consensus       364 ~~-~-----~~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~gY~~~~  437 (479)
                      .. .     ..+++++|.|.|      +++++++|++ +.          +++.|+.|||+++    |+ +++.||++++
T Consensus       293 ~~~~~~~~~~~~~~~vG~~~~------~~~~~i~d~~-~~----------~~~~g~~Gel~v~----~~-~~~~gY~~~~  350 (488)
T PRK09088        293 GMSVDCDVIRAKAGAAGIPTP------TVQTRVVDDQ-GN----------DCPAGVPGELLLR----GP-NLSPGYWRRP  350 (488)
T ss_pred             ccCCCcccccccCCccccCCC------CcEEEEECCC-CC----------CCcCCCceEEEEE----CC-ccchhhcCCh
Confidence            21 1     234567777665      7889988854 44          5688899999998    77 8999999998


Q ss_pred             hhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         438 ASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       438 ~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                      +.+++.+.     ++|||+|||+|++|++|++++.||.||++
T Consensus       351 ~~~~~~~~-----~~g~~~TGDl~~~~~~g~l~i~GR~~d~i  387 (488)
T PRK09088        351 QATARAFT-----GDGWFRTGDIARRDADGFFWVVDRKKDMF  387 (488)
T ss_pred             hhhhhhhc-----CCCCeeecceEEEcCCCcEEEeccccceE
Confidence            77776553     37999999999999999999999999974

>PLN02479 acetate-CoA ligase

Probab=100.00  E-value=3.7e-51  Score=419.75  Aligned_cols=415  Identities=19%  Similarity=0.233  Sum_probs=307.8

Q ss_pred             cHHHHHHhhhhcccchhHHHHHHHhhcCCCccccEEE---Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHH
Q psy8225          33 DLKQLISGMQKTLPTYARPLFVRTIREVPMTGAYKYT---VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVC  108 (479)
Q Consensus        33 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~p~~~a~~~~---~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~  108 (479)
                      |..++.+.+..+.+.++.+++.+.+..+|+++|+++.   +|| ||.++++++|..|.+.|+++||+|+++++|++++++
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~ty~eL~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~   85 (567)
T PLN02479          6 DIDDLPKNAANYTALTPLWFLERAAVVHPTRKSVVHGSVRYTWAQTYQRCRRLASALAKRSIGPGSTVAVIAPNIPAMYE   85 (567)
T ss_pred             ccccccCccccccccCHHHHHHHHHhhCCCceEEEECCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHH
Confidence            3344444555555566889999999999999999887   999 999999999999999999999999999999999999


Q ss_pred             HHHHhhhcCceeeeecCCcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCC--------cceEEecCCCCCC----C
Q psy8225         109 MWLGLSKIGVVAAFINTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIP--------GISLYAAGTRRKP----Q  176 (479)
Q Consensus       109 ~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~----~  176 (479)
                      +++||+++|++++|+++.++.+++.++++.++++++|+++...+...++.....        ...+++.......    .
T Consensus        86 ~~la~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (567)
T PLN02479         86 AHFGVPMAGAVVNCVNIRLNAPTIAFLLEHSKSEVVMVDQEFFTLAEEALKILAEKKKSSFKPPLLIVIGDPTCDPKSLQ  165 (567)
T ss_pred             HHHHHHhCCcEEEEeccccCHHHHHHHHhhcCceEEEEchhhhhHHHHHHHHHhhcccccCCCceEEEecCCcCCccccc
Confidence            999999999999999999999999999999999999999876554444322111        1122222211100    0


Q ss_pred             ccCCCccccccccCCcCCCCCCcccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcCCCCCCeEEEec
Q psy8225         177 AKVLPSTTLLDEELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTL  256 (479)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~  256 (479)
                      .....+...+.+++..........  .....++.++++|||||||.||+|++||+++..........+++..++++++.+
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (567)
T PLN02479        166 YALGKGAIEYEKFLETGDPEFAWK--PPADEWQSIALGYTSGTTASPKGVVLHHRGAYLMALSNALIWGMNEGAVYLWTL  243 (567)
T ss_pred             cccccCcccHHHHHhccccccccC--CCCCcccceEEEECCCCCCCCcEEEeccHHHHHHHHHHHhhcCCCCCCEEEEec
Confidence            001112223333333211111000  122334678899999999999999999999876665555567788899999999


Q ss_pred             cchhhhhhHHHHHHHHhcCceEEecCCCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCC-CCCCceeEEE--ecCC
Q psy8225         257 PLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPE-DTQHSVKMMI--GNGL  333 (479)
Q Consensus       257 pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~-~~l~~lr~~~--G~~l  333 (479)
                      |++|.+++...+...+..|.++++ ..+++..+++.++++++|++.++|++++.|.+...... ..+++++.++  |+++
T Consensus       244 p~~h~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~l~~~~~~G~~~  322 (567)
T PLN02479        244 PMFHCNGWCFTWTLAALCGTNICL-RQVTAKAIYSAIANYGVTHFCAAPVVLNTIVNAPKSETILPLPRVVHVMTAGAAP  322 (567)
T ss_pred             chhhhhhHHHHHHHHhhcCceEec-cCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhhhhhcccccccceeEEEEcCCCC
Confidence            999999876555555666666554 57899999999999999999999999999987654332 2467787765  8899


Q ss_pred             ChhhHHHHHHHhCcceeeeeccccccCcccccCC------CC--------CCcccccCccccCCCcee-eEEeCCCCCCc
Q psy8225         334 RPQVWEPFQKRFGLDRICEFYGATEGNANLMNAD------GK--------VGAVGYIPYIAIPFYPVG-LIKCDPETSEP  398 (479)
Q Consensus       334 ~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~------~~--------~~~~g~~~~~~~~~~~~~-~~i~d~~~~~~  398 (479)
                      ++++.++|.+. +. ++++.||+||+++.+....      ..        ..+.|.+.+      ++. ++++|++++. 
T Consensus       323 ~~~~~~~~~~~-~~-~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~------g~~~~~i~d~~~~~-  393 (567)
T PLN02479        323 PPSVLFAMSEK-GF-RVTHTYGLSETYGPSTVCAWKPEWDSLPPEEQARLNARQGVRYI------GLEGLDVVDTKTMK-  393 (567)
T ss_pred             CHHHHHHHHhc-CC-ceecccccccccccccceeccccccccCcccccccccccCCCcC------CcCceeEEcCCCCc-
Confidence            99999998875 77 8999999999864332110      00        012333322      332 5667766555 


Q ss_pred             cccCCCccccccCC--CCceEEEEeecCCcccccccccCcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCC
Q psy8225         399 IRNKDGLCIPCKAE--EPGILIGMIKESRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTG  476 (479)
Q Consensus       399 i~~~~g~~~~~~~~--~~Gel~v~~~~~~~~~~~~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~  476 (479)
                               +++.+  +.|||+++    |+ +++.|||++++.+.+.+.      +|||+|||+|++|++|+++++||.|
T Consensus       394 ---------~~~~~g~~~GEl~v~----g~-~~~~GY~~~~~~t~~~~~------~g~~~TGDl~~~~~~g~l~~~GR~~  453 (567)
T PLN02479        394 ---------PVPADGKTMGEIVMR----GN-MVMKGYLKNPKANEEAFA------NGWFHSGDLGVKHPDGYIEIKDRSK  453 (567)
T ss_pred             ---------ccCCCCCCceEEEEe----cc-chhhhhhcCcccccchhc------CCceecceeEEEcCCccEEEecccc
Confidence                     34443  57999998    77 899999999887776653      7899999999999999999999999


Q ss_pred             CCC
Q psy8225         477 DAC  479 (479)
Q Consensus       477 d~~  479 (479)
                      |++
T Consensus       454 d~i  456 (567)
T PLN02479        454 DII  456 (567)
T ss_pred             ceE
Confidence            974

>PRK10252 entF enterobactin synthase subunit F; Provisional

Probab=100.00  E-value=3e-51  Score=458.85  Aligned_cols=390  Identities=17%  Similarity=0.235  Sum_probs=317.2

Q ss_pred             chhHHHHHHHhhcCCCccccEEE---Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCceeee
Q psy8225          47 TYARPLFVRTIREVPMTGAYKYT---VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAF  122 (479)
Q Consensus        47 ~~l~~~l~~~~~~~p~~~a~~~~---~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~  122 (479)
                      .++.++|.++++.+|+++|+++.   +|| ||.++++++|+.|.+.|+++||+|+++++|++++++++|||+++|++++|
T Consensus       458 ~~l~~~~~~~~~~~p~~~Al~~~~~~~Ty~eL~~~~~~la~~L~~~g~~~g~~V~l~~~~~~~~i~~~la~~~~G~~~vp  537 (1296)
T PRK10252        458 TTLSALVAQQAAKTPDAPALADARYQFSYREMREQVVALANLLRERGVKPGDSVAVALPRSVFLTLALHAIVEAGAAWLP  537 (1296)
T ss_pred             CCHHHHHHHHHHhCCCCeEEEcCCCcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEe
Confidence            46889999999999999999988   999 99999999999999999999999999999999999999999999999999


Q ss_pred             ecCCcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCCcceEEecCCCCCCCccCCCccccccccCCcCCCCCCcccc
Q psy8225         123 INTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTEDI  202 (479)
Q Consensus       123 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (479)
                      ++|..+.+++.++++.+++++++++......+..    .+.+.+...                 ............    
T Consensus       538 ld~~~p~~~~~~~l~~~~~~~~i~~~~~~~~~~~----~~~~~~~~~-----------------~~~~~~~~~~~~----  592 (1296)
T PRK10252        538 LDTGYPDDRLKMMLEDARPSLLITTADQLPRFAD----VPDLTSLCY-----------------NAPLAPQGAAPL----  592 (1296)
T ss_pred             cCccCHHHHHHHHHHhCCCCEEEECcchhhhccc----CCCceeeec-----------------ccccccccCCCC----
Confidence            9999999999999999999999998765433221    111111111                 111100000000    


Q ss_pred             cCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcCCCCCCeEEEeccchhhhhhHHHHHHHHhcCceEEecC
Q psy8225         203 KKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRS  282 (479)
Q Consensus       203 ~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G~~~v~~~  282 (479)
                      ....++++++++|||||||.||||+++|+++.+.+.+....+++..+|++++..|++|..+. +.++.++..|+++++.+
T Consensus       593 ~~~~~~~~a~i~~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~-~~~~~~l~~G~~l~~~~  671 (1296)
T PRK10252        593 QLSQPHHTAYIIFTSGSTGRPKGVMVGQTAIVNRLLWMQNHYPLTADDVVLQKTPCSFDVSV-WEFFWPFIAGAKLVMAE  671 (1296)
T ss_pred             CCCCCCCeEEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhcCCCCCCEEEEeCCcchhhhH-HHHHHHHhCCCEEEECC
Confidence            22256789999999999999999999999999999888888999999999999999998885 66788999999999976


Q ss_pred             ---CCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCC--CCCCceeEEE--ecCCChhhHHHHHHHhCcceeeeecc
Q psy8225         283 ---KFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPE--DTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFYG  355 (479)
Q Consensus       283 ---~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~--~~l~~lr~~~--G~~l~~~~~~~~~~~~~~~~v~~~YG  355 (479)
                         ..++..+++.++++++|++.++|++++.+++......  ..++++|.++  |+++++++.+.|.+.++. ++++.||
T Consensus       672 ~~~~~~~~~~~~~i~~~~vt~~~~~Ps~l~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~-~l~n~YG  750 (1296)
T PRK10252        672 PEAHRDPLAMQQFFAEYGVTTTHFVPSMLAAFVASLTPEGARQSCASLRQVFCSGEALPADLCREWQQLTGA-PLHNLYG  750 (1296)
T ss_pred             hhccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhhccccccccCCCccEEEEecCCCCHHHHHHHHhcCCC-EEEeCCC
Confidence               3588999999999999999999999998887643322  2357888776  899999999999998887 9999999


Q ss_pred             ccccCcccccCCCCCC----cccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCcccccc
Q psy8225         356 ATEGNANLMNADGKVG----AVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFN  431 (479)
Q Consensus       356 ~tE~~~~~~~~~~~~~----~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~  431 (479)
                      +||++..++.......    ..+.+++++.+.+++++.|+|+. ++          +++.|+.|||+++    |+ +++.
T Consensus       751 ~TE~~~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~-~~----------~~~~g~~Gel~i~----g~-~~~~  814 (1296)
T PRK10252        751 PTEAAVDVSWYPAFGEELAAVRGSSVPIGYPVWNTGLRILDAR-MR----------PVPPGVAGDLYLT----GI-QLAQ  814 (1296)
T ss_pred             cchhhheeeeeecccccccccCCCCCCcccccCCCEEEEECCC-CC----------CCCCCCceEEEec----cc-ccch
Confidence            9999865543221111    12333445555568999999854 44          6789999999998    77 8999


Q ss_pred             cccCcchhHHH-HHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         432 GYADKKASEKK-ILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       432 gY~~~~~~~~~-~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                      ||+++++.+.+ +..++|.++++||+|||+|++++||+++++||.||+|
T Consensus       815 GY~~~~~~t~~~f~~~~~~~~~~~y~TGDl~~~~~~G~l~~~GR~d~~i  863 (1296)
T PRK10252        815 GYLGRPDLTASRFIADPFAPGERMYRTGDVARWLDDGAVEYLGRSDDQL  863 (1296)
T ss_pred             hhCCCcccchhhcccCCCCCCCEEEecCceEEEcCCCcEEEecccCCeE
Confidence            99998776654 4455555667899999999999999999999999975

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase

Probab=100.00  E-value=4.1e-51  Score=459.28  Aligned_cols=411  Identities=17%  Similarity=0.163  Sum_probs=310.0

Q ss_pred             chhHHHHHHHhhcCCCccccEE-----------E-Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHh
Q psy8225          47 TYARPLFVRTIREVPMTGAYKY-----------T-VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGL  113 (479)
Q Consensus        47 ~~l~~~l~~~~~~~p~~~a~~~-----------~-~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~  113 (479)
                      .++.++|+++++.+|+++|+++           . +|| ||.++++++|++|++.|+++|++|+|+++|++++++++|||
T Consensus       236 ~~l~~~~~~~a~~~pd~~A~~~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~~~~~i~~~lA~  315 (1389)
T TIGR03443       236 GAIHDIFADNAEKHPDRTCVVETPSFLDPSSKTRSFTYKQINEASNILAHYLLKTGIKRGDVVMIYAYRGVDLVVAVMGV  315 (1389)
T ss_pred             CcHHHHHHHHHHhCCCCeEEEeccccccccCCCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEecCCHHHHHHHHHH
Confidence            4689999999999999999985           1 999 99999999999999999999999999999999999999999


Q ss_pred             hhcCceeeeecCCcchHHHHHHHHhccceEEEeChhh---HHHHHHhhccC----CcceEEecCCCCCCCccCCCccc--
Q psy8225         114 SKIGVVAAFINTNQRQHILIHSIKVAECKAIIYGAEL---SEALTEVKDSI----PGISLYAAGTRRKPQAKVLPSTT--  184 (479)
Q Consensus       114 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~---~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~--  184 (479)
                      +++|++++|++|.++.+++.++++.+++++++++...   ...+.......    ..+..+........    .....  
T Consensus       316 l~~G~~~vpldp~~p~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~  391 (1389)
T TIGR03443       316 LKAGATFSVIDPAYPPARQTIYLSVAKPRALIVIEKAGTLDQLVRDYIDKELELRTEIPALALQDDGSL----VGGSLEG  391 (1389)
T ss_pred             HhhCcEEeccCCCCcHHHHHHHHHhcCCCEEEEeccccccchhhhhhhhcccccccccceEEecccccc----ccccccc
Confidence            9999999999999999999999999999999986542   11111111100    00111111100000    00000  


Q ss_pred             cccccCCcCCCCCCcccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcCCCCCCeEEEeccchhhhhh
Q psy8225         185 LLDEELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGG  264 (479)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~  264 (479)
                      ...+.+................++++++|+|||||||.||||+++|+++...+......+++..+|+++...|++|..++
T Consensus       392 ~~~~~~~~~~~~~~~~~~~~~~~~d~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~~  471 (1389)
T TIGR03443       392 GETDVLAPYQALKDTPTGVVVGPDSNPTLSFTSGSEGIPKGVLGRHFSLAYYFPWMAKRFGLSENDKFTMLSGIAHDPIQ  471 (1389)
T ss_pred             ccccccccccccccCCCCCcCCCCCceEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhcCCCCCCEEEEecCceecchH
Confidence            00011100000000000123457889999999999999999999999999988888888889999999999999998775


Q ss_pred             HHHHHHHHhcCceEEecCC---CChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEE--ecCCChhhHH
Q psy8225         265 LLGIGQCLLGGSTVVIRSK---FSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWE  339 (479)
Q Consensus       265 ~~~~~~~l~~G~~~v~~~~---~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~--G~~l~~~~~~  339 (479)
                       ..++.++..|+++++.+.   .++..+++.+.++++|++.++|++++.|.....   ..+++||.++  |+++++.+.+
T Consensus       472 -~~i~~~L~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~---~~~~~lr~~~~gGe~l~~~~~~  547 (1389)
T TIGR03443       472 -RDMFTPLFLGAQLLVPTADDIGTPGRLAEWMAKYGATVTHLTPAMGQLLSAQAT---TPIPSLHHAFFVGDILTKRDCL  547 (1389)
T ss_pred             -HHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHhCCeEEEeCHHHHHHHHhccc---ccCCCccEEEEecccCCHHHHH
Confidence             678889999999999764   367899999999999999999999998875432   2467888876  8999999999


Q ss_pred             HHHHHhCcceeeeeccccccCcccccCC-----CCC---CcccccCccccCCCceeeEEeCCCCCCccccCCCccccccC
Q psy8225         340 PFQKRFGLDRICEFYGATEGNANLMNAD-----GKV---GAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKA  411 (479)
Q Consensus       340 ~~~~~~~~~~v~~~YG~tE~~~~~~~~~-----~~~---~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~  411 (479)
                      ++.+.++..++++.||+||++..++...     ...   .......|++.+++++++.|+|++...         .+++.
T Consensus       548 ~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ivd~~~~~---------~~~~~  618 (1389)
T TIGR03443       548 RLQTLAENVCIVNMYGTTETQRAVSYFEIPSRSSDSTFLKNLKDVMPAGKGMKNVQLLVVNRNDRT---------QTCGV  618 (1389)
T ss_pred             HHHHhCCCCEEEECccCCccceeEEEEEccccccccchhhcccCcCcCCCccCCCEEEEECCccCC---------CcCCC
Confidence            9988765459999999999976543211     000   001122344555568999999865321         26789


Q ss_pred             CCCceEEEEeecCCcccccccccCcchhHHHHHhh-hc----------------------cCCCcEEEcCCeeEEecCCc
Q psy8225         412 EEPGILIGMIKESRAESHFNGYADKKASEKKILRN-VY----------------------SHGDAAFNTGDILIKDKFQY  468 (479)
Q Consensus       412 ~~~Gel~v~~~~~~~~~~~~gY~~~~~~~~~~~~~-~~----------------------~~~~g~~~TGD~g~~d~dG~  468 (479)
                      |+.|||+++    || +++.||+|+++.+.+.|.. .|                      .+++|||+|||+|++++||+
T Consensus       619 G~~GEL~i~----G~-~v~~GY~~~p~~t~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~TGDlg~~~~dG~  693 (1389)
T TIGR03443       619 GEVGEIYVR----AG-GLAEGYLGLPELNAEKFVNNWFVDPSHWIDLDKENNKPEREFWLGPRDRLYRTGDLGRYLPDGN  693 (1389)
T ss_pred             CCceEEEec----cc-ccchhcCCChhHhhhhccCCcccCcccccccccccccccccccCCCccceeecCCceeEcCCCC
Confidence            999999998    88 9999999998877766531 11                      12468999999999999999


Q ss_pred             EEEecCCCCCC
Q psy8225         469 FYFKDRTGDAC  479 (479)
Q Consensus       469 l~~~GR~~d~~  479 (479)
                      |+|+||.||++
T Consensus       694 l~~~GR~dd~I  704 (1389)
T TIGR03443       694 VECCGRADDQV  704 (1389)
T ss_pred             EEEecccCCEE
Confidence            99999999985

Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.

>PRK05620 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.8e-50  Score=415.62  Aligned_cols=409  Identities=17%  Similarity=0.205  Sum_probs=313.3

Q ss_pred             cccchhHHHHHHHhhcCCCccccEEE------Eeh-hhHHHHHHHHHHHHH-cCCCCCCEEEEEcCCchHHHHHHHHhhh
Q psy8225          44 TLPTYARPLFVRTIREVPMTGAYKYT------VTF-QVEDHSNRIANFFKS-KGLQRGDAVALFMEGQPEYVCMWLGLSK  115 (479)
Q Consensus        44 ~~~~~l~~~l~~~~~~~p~~~a~~~~------~Ty-~l~~~~~~la~~L~~-~gi~~gd~V~i~~~n~~e~~~~~lA~~~  115 (479)
                      +.|.++.++|++++..+|+++|+.+.      +|| ||.+++.++|.+|.+ .|+++||+|+++++|+++++++++||++
T Consensus         7 ~~~~~~~~~l~~~a~~~~~~~a~~~~~~~~~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~~~~~n~~e~~~~~lA~~~   86 (576)
T PRK05620          7 DVPLSLTRILEYGSTVHGDTTVTTWGGAEQEQTTFAAIGARAAALAHALHDELGITGDQRVGSMMYNCAEHLEVLFAVAC   86 (576)
T ss_pred             cCCCcHHHHHHHHHHhCCCceEEEEcCCceEEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHHHh
Confidence            35677999999999999999999863      999 999999999999987 7999999999999999999999999999


Q ss_pred             cCceeeeecCCcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCCcce-EEecCCCCCCC----ccCCCccccccccC
Q psy8225         116 IGVVAAFINTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGIS-LYAAGTRRKPQ----AKVLPSTTLLDEEL  190 (479)
Q Consensus       116 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~----~~~~~~~~~~~~~~  190 (479)
                      +|+++++++|..+.+++.++++.++++++|++......+.+.....+..+ ++..+......    .........|.+++
T Consensus        87 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~  166 (576)
T PRK05620         87 MGAVFNPLNKQLMNDQIVHIINHAEDEVIVADPRLAEQLGEILKECPCVRAVVFIGPSDADSAAAHMPEGIKVYSYEALL  166 (576)
T ss_pred             cCCEEeecccccCHHHHHHHHhccCCcEEEEChhhHHHHHHHHhhCccccEEEEecCcccccchhccccccccccHHHHh
Confidence            99999999999999999999999999999999877766666555554433 22222211100    00001123345544


Q ss_pred             CcCCCCCCcccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhh--hhhcCCCCCCeEEEeccchhhhhhHHHH
Q psy8225         191 PEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISG--RYQTGLTSDDVVYTTLPLYHTAGGLLGI  268 (479)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~--~~~~~~~~~d~~~~~~pl~h~~g~~~~~  268 (479)
                      ........   .....++++++++|||||||.||+|+++|+++.......  ...+++..++++++.+|++|.+|+. .+
T Consensus       167 ~~~~~~~~---~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~-~~  242 (576)
T PRK05620        167 DGRSTVYD---WPELDETTAAAICYSTGTTGAPKGVVYSHRSLYLQSLSLRTTDSLAVTHGESFLCCVPIYHVLSWG-VP  242 (576)
T ss_pred             hcCCCcCC---CCCCCccceeEEEECCCCCCCCceEEEEcHHHHHHHHHhhhhhhcCCCCCCeEEEeCChHHhhhhH-HH
Confidence            32221111   133456889999999999999999999999986544332  2346788899999999999999874 45


Q ss_pred             HHHHhcCceEEecC-CCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEE--ecCCChhhHHHHHHHh
Q psy8225         269 GQCLLGGSTVVIRS-KFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRF  345 (479)
Q Consensus       269 ~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~--G~~l~~~~~~~~~~~~  345 (479)
                      +.++..|+++++.. .+++..+++.++++++|.+..+|+++..++...........++|.++  |+++++++.++|++.+
T Consensus       243 ~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~~  322 (576)
T PRK05620        243 LAAFMSGTPLVFPGPDLSAPTLAKIIATAMPRVAHGVPTLWIQLMVHYLKNPPERMSLQEIYVGGSAVPPILIKAWEERY  322 (576)
T ss_pred             HHHHhcCceEEecCCCCCHHHHHHHHHHhcCceeeecCHHHHHHHHHhhccCcccCceeEEEEcCCCCCHHHHHHHHHHh
Confidence            67888999998875 57899999999999999999999999888765433333345788876  8899999999999999


Q ss_pred             CcceeeeeccccccCcccccC-CC----------CCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCC
Q psy8225         346 GLDRICEFYGATEGNANLMNA-DG----------KVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEP  414 (479)
Q Consensus       346 ~~~~v~~~YG~tE~~~~~~~~-~~----------~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~  414 (479)
                      +. ++++.||+||++...... +.          ...++|++.+      +++++++|+  +..+        +.+.++.
T Consensus       323 ~~-~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~------~~~~~i~~~--g~~~--------~~~~~~~  385 (576)
T PRK05620        323 GV-DVVHVWGMTETSPVGTVARPPSGVSGEARWAYRVSQGRFPA------SLEYRIVND--GQVM--------ESTDRNE  385 (576)
T ss_pred             CC-ceeeeccccccccceeeeccCCccccccccccccccCCcCC------ceeEEEecC--Cccc--------cCCCCCc
Confidence            98 899999999998654311 10          1124455433      688888885  4422        2345678


Q ss_pred             ceEEEEeecCCcccccccccCcchhH----HHHHh--------hhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         415 GILIGMIKESRAESHFNGYADKKASE----KKILR--------NVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       415 Gel~v~~~~~~~~~~~~gY~~~~~~~----~~~~~--------~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                      |||+++    |+ .++.||+++++.+    ...|.        +.+. .+|||+|||+|++|+||++++.||.||++
T Consensus       386 Gel~v~----g~-~~~~gY~~~~~~t~~~~~~~f~~~~~~~~~~~~~-~~g~~~TGD~~~~~~dg~l~~~GR~~d~i  456 (576)
T PRK05620        386 GEIQVR----GN-WVTASYYHSPTEEGGGAASTFRGEDVEDANDRFT-ADGWLRTGDVGSVTRDGFLTIHDRARDVI  456 (576)
T ss_pred             eEEEEE----cC-cccccccCCccccccccccccccccchhhhcccc-cCCcEecCceEEEcCCceEEEEechhhhh
Confidence            999998    77 8999999987665    11111        0111 36899999999999999999999999975

>PRK06710 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.3e-50  Score=415.96  Aligned_cols=402  Identities=22%  Similarity=0.278  Sum_probs=311.3

Q ss_pred             chhHHHHHHHhhcCCCccccEEE---Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCceeee
Q psy8225          47 TYARPLFVRTIREVPMTGAYKYT---VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAF  122 (479)
Q Consensus        47 ~~l~~~l~~~~~~~p~~~a~~~~---~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~  122 (479)
                      .++.++|.+.+..+|+++|+++.   +|| ||.+++.++|.+|.+.|+++||+|+++++|++++++++|||+++|++++|
T Consensus        24 ~~~~~~~~~~a~~~p~~~a~~~~~~~~ty~eL~~~~~~la~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vp  103 (563)
T PRK06710         24 QPLHKYVEQMASRYPEKKALHFLGKDITFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGYYGTLLAGGIVVQ  103 (563)
T ss_pred             ccHHHHHHHHHHHCCCceEEEecCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHHcCeEEec
Confidence            45889999999999999999987   999 99999999999999999999999999999999999999999999999999


Q ss_pred             ecCCcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCCcceEEecC--CCCC-CCcc-----------C------CCc
Q psy8225         123 INTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAG--TRRK-PQAK-----------V------LPS  182 (479)
Q Consensus       123 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~-----------~------~~~  182 (479)
                      ++|..+.+++.++++.+++++++++......+...........+++..  .... +...           .      ...
T Consensus       104 i~p~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (563)
T PRK06710        104 TNPLYTERELEYQLHDSGAKVILCLDLVFPRVTNVQSATKIEHVIVTRIADFLPFPKNLLYPFVQKKQSNLVVKVSESET  183 (563)
T ss_pred             cCcccCHHHHHHHHhccCCeEEEEeccchhhhhccchhhccceeEEeccccccccccccccchhhcccccccccccccch
Confidence            999999999999999999999999876544433322211111111110  0000 0000           0      000


Q ss_pred             cccccccCCcCCCCCCcccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhh-hcCCC-CCCeEEEeccchh
Q psy8225         183 TTLLDEELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRY-QTGLT-SDDVVYTTLPLYH  260 (479)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~-~~~~~-~~d~~~~~~pl~h  260 (479)
                      ...++.+.... .  ..........++.++++|||||||.||+|.++|+++...+..... .+... .++++++.+|++|
T Consensus       184 ~~~~~~~~~~~-~--~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~l~~~p~~~  260 (563)
T PRK06710        184 IHLWNSVEKEV-N--TGVEVPCDPENDLALLQYTGGTTGFPKGVMLTHKNLVSNTLMGVQWLYNCKEGEEVVLGVLPFFH  260 (563)
T ss_pred             hhhhhhhhhcc-c--cccccccCCCCCEEEEEcCCCCCCCCceEEEehHHHHHHHHHHHhhccCCCCCCceEEEeCchHH
Confidence            00011110000 0  000001123578999999999999999999999998755433222 22333 3468899999999


Q ss_pred             hhhhHHHHHHHHhcCceEEecCCCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEE--ecCCChhhH
Q psy8225         261 TAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVW  338 (479)
Q Consensus       261 ~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~--G~~l~~~~~  338 (479)
                      .+|+...+..++..|+++++.+.+++..+++.++++++|++.++|+++..+++........++++|.++  |+++++++.
T Consensus       261 ~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~v~~gg~~~~~~~~  340 (563)
T PRK06710        261 VYGMTAVMNLSIMQGYKMVLIPKFDMKMVFEAIKKHKVTLFPGAPTIYIALLNSPLLKEYDISSIRACISGSAPLPVEVQ  340 (563)
T ss_pred             HHHHHHHHHHHHHcCCeEEEcCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHcCCccccCChhhhhheeeCCCcCCHHHH
Confidence            999876677788999999998889999999999999999999999999999886655445568899876  788999999


Q ss_pred             HHHHHHhCcceeeeeccccccCcccccC----CCCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCC
Q psy8225         339 EPFQKRFGLDRICEFYGATEGNANLMNA----DGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEP  414 (479)
Q Consensus       339 ~~~~~~~~~~~v~~~YG~tE~~~~~~~~----~~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~  414 (479)
                      +++.+.++. .+++.||+||++......    ...++++|++.+      ++.++++|+++++          +++.|+.
T Consensus       341 ~~~~~~~~~-~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~------~~~~~i~~~~~~~----------~~~~g~~  403 (563)
T PRK06710        341 EKFETVTGG-KLVEGYGLTESSPVTHSNFLWEKRVPGSIGVPWP------DTEAMIMSLETGE----------ALPPGEI  403 (563)
T ss_pred             HHHHHhhCC-CEecccccccCccccccCcccccccCCccCCCCC------CCeEEEEECCCCc----------cCCCCCc
Confidence            999999988 899999999998654321    234566777655      6888888877666          5688999


Q ss_pred             ceEEEEeecCCcccccccccCcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         415 GILIGMIKESRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       415 Gel~v~~~~~~~~~~~~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                      |||+++    |+ .++.||+++++.+...+.      +|||+|||+|++|+||++++.||.||++
T Consensus       404 Gel~v~----g~-~~~~gY~~~~~~~~~~~~------~g~~~TGD~~~~~~~g~~~~~GR~dd~i  457 (563)
T PRK06710        404 GEIVVK----GP-QIMKGYWNKPEETAAVLQ------DGWLHTGDVGYMDEDGFFYVKDRKKDMI  457 (563)
T ss_pred             eEEEEe----cC-ccchhhhCChHHHhhhcc------cCcccccceEEEcCCCcEEEeeccccEE
Confidence            999998    77 899999999887776553      7899999999999999999999999974

>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional

Probab=100.00  E-value=2.6e-50  Score=413.59  Aligned_cols=404  Identities=21%  Similarity=0.240  Sum_probs=312.0

Q ss_pred             cchhHHHHHHHhhcCCCccccEEE---Eeh-hhHHHHHHHHHHHH-HcCCCCCCEEEEEcCCchHHHHHHHHhhhcCcee
Q psy8225          46 PTYARPLFVRTIREVPMTGAYKYT---VTF-QVEDHSNRIANFFK-SKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVA  120 (479)
Q Consensus        46 ~~~l~~~l~~~~~~~p~~~a~~~~---~Ty-~l~~~~~~la~~L~-~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~  120 (479)
                      +.++.++|.+++..+|+++|+++.   +|| ||.+++.++|+.|. +.|+++||+|+++++|++++++++|||+++|+++
T Consensus        24 ~~~~~~~l~~~~~~~~~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~  103 (560)
T PRK08751         24 FRTVAEVFATSVAKFADRPAYHSFGKTITYREADQLVEQFAAYLLGELQLKKGDRVALMMPNCLQYPIATFGVLRAGLTV  103 (560)
T ss_pred             CCcHHHHHHHHHHhCCCCceEEECCceeeHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHhCeEE
Confidence            356889999999999999999976   999 99999999999997 5799999999999999999999999999999999


Q ss_pred             eeecCCcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCCcceEEecCCCCCCC-------------------ccCCC
Q psy8225         121 AFINTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQ-------------------AKVLP  181 (479)
Q Consensus       121 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~  181 (479)
                      +|++|.++.+++.+++++++++++++++.....+.++....+...++.........                   .....
T Consensus       104 v~l~p~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (560)
T PRK08751        104 VNVNPLYTPRELKHQLIDSGASVLVVIDNFGTTVQQVIADTPVKQVITTGLGDMLGFPKAALVNFVVKYVKKLVPEYRIN  183 (560)
T ss_pred             eccCccCCHHHHHHHHHhcCCeEEEEcchhHHHHHHHhhCCCccEEEEechhhhcccccchhhhhhhhhhhccccccCCC
Confidence            99999999999999999999999999887665555544443322222211000000                   00000


Q ss_pred             ccccccccCCcCCCCCCcccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcC----CCCC-CeEEEec
Q psy8225         182 STTLLDEELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTG----LTSD-DVVYTTL  256 (479)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~----~~~~-d~~~~~~  256 (479)
                      ....+.+.+.........  ......+++++++|||||||.||+|.++|.++...+......+.    +..+ +++++.+
T Consensus       184 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (560)
T PRK08751        184 GAIRFREALALGRKHSMP--TLQIEPDDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQWLAGTGKLEEGCEVVITAL  261 (560)
T ss_pred             ccccHHHHHhccCCCCCC--CCCCCcccEEEEEcCCCCCCCCCEEEEccHHHHHHHHHHHHhhccccccCCCCceEEEec
Confidence            001111111111110000  12345688999999999999999999999999877665544433    3333 5778889


Q ss_pred             cchhhhhhHHHHHHHHhcCceEEec-CCCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEE--ecCC
Q psy8225         257 PLYHTAGGLLGIGQCLLGGSTVVIR-SKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGL  333 (479)
Q Consensus       257 pl~h~~g~~~~~~~~l~~G~~~v~~-~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~--G~~l  333 (479)
                      |++|.+|+....+..+..|++.++. ..+++..+++.++++++|++..+|.++..+.+........++++|.++  |+++
T Consensus       262 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~  341 (560)
T PRK08751        262 PLYHIFALTANGLVFMKIGGCNHLISNPRDMPGFVKELKKTRFTAFTGVNTLFNGLLNTPGFDQIDFSSLKMTLGGGMAV  341 (560)
T ss_pred             ChHHHHHHHHhhhhHhhccceEEEecCcCCHHHHHHHHHhcceeEecChHHHHHHHHcCcCcCCcchhhheeeeeCCCCC
Confidence            9999999766555666666665554 467899999999999999999999999999887655555678899877  7889


Q ss_pred             ChhhHHHHHHHhCcceeeeeccccccCcccccC----CCCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccc
Q psy8225         334 RPQVWEPFQKRFGLDRICEFYGATEGNANLMNA----DGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPC  409 (479)
Q Consensus       334 ~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~----~~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~  409 (479)
                      ++++.+.|++.++. .+++.||+||++..+...    ...++++|.|.+      +++++++|+ ++.          ++
T Consensus       342 ~~~~~~~~~~~~~~-~~~~~YG~tE~~~~~~~~~~~~~~~~~~vG~~~~------~~~v~i~d~-~~~----------~~  403 (560)
T PRK08751        342 QRSVAERWKQVTGL-TLVEAYGLTETSPAACINPLTLKEYNGSIGLPIP------STDACIKDD-AGT----------VL  403 (560)
T ss_pred             CHHHHHHHHHHhCC-eEEEeeccccCCCceecccccccccCCCcCccCC------CceEEEECC-CCC----------CC
Confidence            99999999999998 899999999998665432    233466777655      788998884 444          56


Q ss_pred             cCCCCceEEEEeecCCcccccccccCcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         410 KAEEPGILIGMIKESRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       410 ~~~~~Gel~v~~~~~~~~~~~~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                      +.|+.|||+++    |+ .++.||+++++.+.+.++     .+|||+|||+|++|++|++++.||.||++
T Consensus       404 ~~g~~Gel~v~----~~-~~~~gy~~~~~~~~~~~~-----~~g~~~TGD~~~~~~~g~l~i~GR~~d~i  463 (560)
T PRK08751        404 AIGEIGELCIK----GP-QVMKGYWKRPEETAKVMD-----ADGWLHTGDIARMDEQGFVYIVDRKKDMI  463 (560)
T ss_pred             CCCCceEEEEe----cC-ccchhhcCChhhhhhccc-----cCCCccccceEEEcCCceEEEEeechhhe
Confidence            88999999998    77 899999999887776553     37899999999999999999999999974

>PRK06018 putative acyl-CoA synthetase; Provisional

Probab=100.00  E-value=3.9e-50  Score=410.37  Aligned_cols=404  Identities=20%  Similarity=0.281  Sum_probs=311.8

Q ss_pred             hhcccchhHHHHHHHhhcCCCccccEEE-------Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHh
Q psy8225          42 QKTLPTYARPLFVRTIREVPMTGAYKYT-------VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGL  113 (479)
Q Consensus        42 ~~~~~~~l~~~l~~~~~~~p~~~a~~~~-------~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~  113 (479)
                      ....|.++.++|+++++.+|+++++...       +|| ||.++++++|++|.+.|+++||+|+++++|+++++++++||
T Consensus         5 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~Ty~el~~~v~~la~~L~~~g~~~gd~v~i~~~~~~~~~~~~la~   84 (542)
T PRK06018          5 MQDWPLLCHRIIDHAARIHGNREVVTRSVEGPIVRTTYAQIHDRALKVSQALDRDGIKLGDRVATIAWNTWRHLEAWYGI   84 (542)
T ss_pred             hhcCCCCHHHHHHHHHHhCCCceEEEeeccCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHH
Confidence            3456788999999999999999999842       899 99999999999999999999999999999999999999999


Q ss_pred             hhcCceeeeecCCcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCCcceE-EecCCCCCCCccCCCccccccccCCc
Q psy8225         114 SKIGVVAAFINTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISL-YAAGTRRKPQAKVLPSTTLLDEELPE  192 (479)
Q Consensus       114 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (479)
                      +++|++++|+++..+.+++.++++.+++++++++.+..+.+.++....+.+.. ++..+..............+.+++..
T Consensus        85 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (542)
T PRK06018         85 MGIGAICHTVNPRLFPEQIAWIINHAEDRVVITDLTFVPILEKIADKLPSVERYVVLTDAAHMPQTTLKNAVAYEEWIAE  164 (542)
T ss_pred             HhcCeEeeccccccCHHHHHHHHhccCCCEEEEccccHHHHHHHHhhCCCccEEEEecccccccccCccccccHHHHhcc
Confidence            99999999999999999999999999999999998877776665554443332 22222111000000112233333332


Q ss_pred             CCCCCCcccccCCCCCCcEEEEEccCCCCCcceEEeehHHHH-H-HhhhhhhhcCCCCCCeEEEeccchhhhhhHHHHHH
Q psy8225         193 VSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAM-F-MAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQ  270 (479)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~-~-~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~  270 (479)
                      .....   .......+++++++|||||||.||+|++||++.+ . ........+++..+|+++...|++|.+++... +.
T Consensus       165 ~~~~~---~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~h~~~~~~~-~~  240 (542)
T PRK06018        165 ADGDF---AWKTFDENTAAGMCYTSGTTGDPKGVLYSHRSNVLHALMANNGDALGTSAADTMLPVVPLFHANSWGIA-FS  240 (542)
T ss_pred             CCccc---CcccCCccceeeEEecCCCCCCCcEEEEechhHHHHHHHHhhhhhcCCCCCCEEEEecCHHHHhhhHHH-Hh
Confidence            21111   1123456788999999999999999999998743 2 22233446678899999999999999887544 46


Q ss_pred             HHhcCceEEecC-CCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEE--ecCCChhhHHHHHHHhCc
Q psy8225         271 CLLGGSTVVIRS-KFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGL  347 (479)
Q Consensus       271 ~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~--G~~l~~~~~~~~~~~~~~  347 (479)
                      ++..|+++++.. .+++..+++.++++++|++.++|++++.|.+........++++|.++  |+++++++.++|++ ++.
T Consensus       241 ~~~~g~~~v~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~G~~l~~~~~~~~~~-~~~  319 (542)
T PRK06018        241 APSMGTKLVMPGAKLDGASVYELLDTEKVTFTAGVPTVWLMLLQYMEKEGLKLPHLKMVVCGGSAMPRSMIKAFED-MGV  319 (542)
T ss_pred             hhhcCceEEccCcCCCHHHHHHHHHhcCCceeecCcHHHHHHHhcccccCCCcccceEEEEcCCCCCHHHHHHHHH-hCC
Confidence            778899998865 57889999999999999999999999999887665555678899877  89999999999999 888


Q ss_pred             ceeeeeccccccCcccccCCC--------------CCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCC
Q psy8225         348 DRICEFYGATEGNANLMNADG--------------KVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEE  413 (479)
Q Consensus       348 ~~v~~~YG~tE~~~~~~~~~~--------------~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~  413 (479)
                       ++++.||+||++.++.....              ...++|+|.+      +++++++|++ ++.+        ++..+.
T Consensus       320 -~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~------g~~i~v~d~~-~~~~--------~~~~~~  383 (542)
T PRK06018        320 -EVRHAWGMTEMSPLGTLAALKPPFSKLPGDARLDVLQKQGYPPF------GVEMKITDDA-GKEL--------PWDGKT  383 (542)
T ss_pred             -CeEeeecccccCcccccccCccccccCCchhhhhccccCCCCCC------CcEEEEECCC-CCCC--------CCCCCc
Confidence             89999999999866532210              1234555443      7889988864 4422        222236


Q ss_pred             CceEEEEeecCCcccccccccCcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         414 PGILIGMIKESRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       414 ~Gel~v~~~~~~~~~~~~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                      .|||+++    |+ +++.||++...   ..+     +.+|||+|||+|++|+||++++.||.||++
T Consensus       384 ~Gel~i~----g~-~~~~gy~~~~~---~~~-----~~~~~~~TGDl~~~~~~g~~~~~GR~~d~i  436 (542)
T PRK06018        384 FGRLKVR----GP-AVAAAYYRVDG---EIL-----DDDGFFDTGDVATIDAYGYMRITDRSKDVI  436 (542)
T ss_pred             eeEEEEe----cC-CcchhhhcCcc---cEe-----cCCcEEEcCCEEEEcCCccEEEEecCCCeE
Confidence            7999998    77 89999998422   111     247999999999999999999999999974

>PRK12467 peptide synthase; Provisional

Probab=100.00  E-value=3.7e-51  Score=488.38  Aligned_cols=385  Identities=17%  Similarity=0.213  Sum_probs=318.2

Q ss_pred             chhHHHHHHHhhcCCCccccEEE---Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCceeee
Q psy8225          47 TYARPLFVRTIREVPMTGAYKYT---VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAF  122 (479)
Q Consensus        47 ~~l~~~l~~~~~~~p~~~a~~~~---~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~  122 (479)
                      .++.++|.++++++|+++|+++.   +|| ||.++++++|+.|.++|+++|++|+|+++|++++++++|||+++|++++|
T Consensus      3095 ~~~~~l~~~~a~~~p~~~Av~~~~~~lTY~eL~~~a~~lA~~L~~~gv~~g~~V~l~~~~s~~~vv~~lavl~aGa~~vp 3174 (3956)
T PRK12467       3095 RLVHQLIEAQVARTPEAPALVFGDQQLSYAELNRRANRLAHRLIAIGVGPDVLVGVAVERSVEMIVALLAVLKAGGAYVP 3174 (3956)
T ss_pred             ccHHHHHHHHHHhCCCcceEeeCCcccCHHHHHHHHHHHHHHHHHcCCCCCCeEEEEeCCCHHHHHHHHHHHhhCcEeec
Confidence            57999999999999999999998   999 99999999999999999999999999999999999999999999999999


Q ss_pred             ecCCcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCCcceEEecCCCCCCCccCCCccccccccCCcCCCCCCcccc
Q psy8225         123 INTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTEDI  202 (479)
Q Consensus       123 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (479)
                      ++|.++.+++.+++++++++++|++......+...    .....+.++...            ..    ......+   .
T Consensus      3175 ld~~~p~~rl~~il~~~~~~~vlt~~~~~~~~~~~----~~~~~~~~~~~~------------~~----~~~~~~~---~ 3231 (3956)
T PRK12467       3175 LDPEYPRERLAYMIEDSGVKLLLTQAHLLEQLPAP----AGDTALTLDRLD------------LN----GYSENNP---S 3231 (3956)
T ss_pred             CCCCChHHHHHHHHhCCCCcEEEechhhhhhcccc----cCCceeeecchh------------hc----ccCCCCC---c
Confidence            99999999999999999999999987654332111    111222221110            00    0000001   1


Q ss_pred             cCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcCCCCCCeEEEeccchhhhhhHHHHHHHHhcCceEEecC
Q psy8225         203 KKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRS  282 (479)
Q Consensus       203 ~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G~~~v~~~  282 (479)
                      ....++++++|+|||||||+||||+++|+++.+.+......+++..+|++++..|++|..+. ..++.++..|+++++.+
T Consensus      3232 ~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~-~~~~~~L~~G~~l~i~~ 3310 (3956)
T PRK12467       3232 TRVMGENLAYVIYTSGSTGKPKGVGVRHGALANHLCWIAEAYELDANDRVLLFMSFSFDGAQ-ERFLWTLICGGCLVVRD 3310 (3956)
T ss_pred             ccCCCCceEEEEEccCCCCCcceeeehhHHHHHHHHHHHHhcCCCcCCEEEEecCccHhHHH-HHHHHHHhCCCEEEECC
Confidence            33467889999999999999999999999999999888888999999999999999999874 77889999999999987


Q ss_pred             C--CChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEE--ecCCChhhHHHHHHHhCcceeeeeccccc
Q psy8225         283 K--FSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFYGATE  358 (479)
Q Consensus       283 ~--~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~--G~~l~~~~~~~~~~~~~~~~v~~~YG~tE  358 (479)
                      .  +++..+++.|.++++|++.++|++++.|.+...  ...+++||.++  ||++++++.++|.+.++...+++.||+||
T Consensus      3311 ~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~--~~~~~~lr~~~~gGe~~~~~~~~~~~~~~~~~~l~n~YG~TE 3388 (3956)
T PRK12467       3311 NDLWDPEELWQAIHAHRISIACFPPAYLQQFAEDAG--GADCASLDIYVFGGEAVPPAAFEQVKRKLKPRGLTNGYGPTE 3388 (3956)
T ss_pred             cccCCHHHHHHHHHHcCCEEEEcCHHHHHHHHhccc--ccCCCCceEEEEecCCCCHHHHHHHHHhCCCCEEEeCcccch
Confidence            5  689999999999999999999999999886533  23567898876  89999999999998886558999999999


Q ss_pred             cCcccccCC--C------CCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCccccc
Q psy8225         359 GNANLMNAD--G------KVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHF  430 (479)
Q Consensus       359 ~~~~~~~~~--~------~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~~  430 (479)
                      ++..++...  .      ...++|+|+      ++++++++|++ ++          +++.|+.|||+++    |+ .++
T Consensus      3389 ~~~~~~~~~~~~~~~~~~~~~~iG~p~------~~~~~~v~d~~-~~----------~vp~G~~GEL~i~----G~-~v~ 3446 (3956)
T PRK12467       3389 AVVTVTLWKCGGDAVCEAPYAPIGRPV------AGRSIYVLDGQ-LN----------PVPVGVAGELYIG----GV-GLA 3446 (3956)
T ss_pred             hEeeeEEEecccccccCCCCCCCcccc------CCCEEEEECCC-CC----------CCCCCCCceEEEc----ch-hhh
Confidence            986554211  1      123455544      48999999844 44          6799999999998    88 999


Q ss_pred             ccccCcchhHHHHH-hhhc-cCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         431 NGYADKKASEKKIL-RNVY-SHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       431 ~gY~~~~~~~~~~~-~~~~-~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                      .||+|+++.|.+.| .++| .++++||+|||+|++++||+|+|+||+||+|
T Consensus      3447 ~GY~~~~~~T~~~F~~~p~~~~g~r~yrTGDl~~~~~dG~l~~~GR~d~~i 3497 (3956)
T PRK12467       3447 RGYHQRPSLTAERFVADPFSGSGGRLYRTGDLARYRADGVIEYLGRIDHQV 3497 (3956)
T ss_pred             hhccCCcccchhhccCCCCCCCCceeeccchhheecCCCcEEEeccccceE
Confidence            99999987776554 4444 3457899999999999999999999999986

>PRK13383 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=3.6e-50  Score=408.31  Aligned_cols=376  Identities=17%  Similarity=0.212  Sum_probs=302.0

Q ss_pred             ccchhHHHHHHHhhcCCCccccEEE---Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCcee
Q psy8225          45 LPTYARPLFVRTIREVPMTGAYKYT---VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVA  120 (479)
Q Consensus        45 ~~~~l~~~l~~~~~~~p~~~a~~~~---~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~  120 (479)
                      .+.++.+.|.+++..+|+++|+.+.   +|| ||.++++++|+.|.+.|+++||+|+++++|++++++++|||+++|+++
T Consensus        33 ~~~~~~~~~~~~a~~~p~~~a~~~~~~~lTy~el~~~~~~la~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~~G~v~  112 (516)
T PRK13383         33 GGTNPYTLLAVTAARWPGRTAIIDDDGALSYRELQRATESLARRLTRDGVAPGRAVGVMCRNGRGFVTAVFAVGLLGADV  112 (516)
T ss_pred             cCCcHHHHHHHHHHHCCCCcEEEeCCCcEeHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHhCeEE
Confidence            5677999999999999999999886   999 999999999999999999999999999999999999999999999999


Q ss_pred             eeecCCcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCCcceEEecCCCCCCCccCCCccccccccCCcCCCCCCcc
Q psy8225         121 AFINTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTE  200 (479)
Q Consensus       121 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (479)
                      +|+++.++.+++.++++.++++.+++++.....+.....     .++.++...             .. ... ...    
T Consensus       113 vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~-----~~~~~~~~~-------------~~-~~~-~~~----  168 (516)
T PRK13383        113 VPISTEFRSDALAAALRAHHISTVVADNEFAERIAGADD-----AVAVIDPAT-------------AG-AEE-SGG----  168 (516)
T ss_pred             EEcCccCCHHHHHHHHhcCCCCEEEEchhHHHHHHhhhc-----ceEEeccch-------------hh-hhc-CCC----
Confidence            999999999999999999999999998766554433211     111111100             00 000 000    


Q ss_pred             cccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHH--hhhhhhhcCCCCCCeEEEeccchhhhhhHHHHHHHHhcCceE
Q psy8225         201 DIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFM--AISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTV  278 (479)
Q Consensus       201 ~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~--~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G~~~  278 (479)
                        .....++.++++|||||||.||+|+++|......  .......+++..++++++.+|++|.+|+. .++.++..|+++
T Consensus       169 --~p~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~-~~~~~l~~G~~~  245 (516)
T PRK13383        169 --RPAVAAPGRIVLLTSGTTGKPKGVPRAPQLRSAVGVWVTILDRTRLRTGSRISVAMPMFHGLGLG-MLMLTIALGGTV  245 (516)
T ss_pred             --CCCCCCCCcEEEECCCCCCCCCeeeecchhhhhhhhHHhHHhhhccCCCCeEEEecCCcchhhHH-HHHHHHhcCCEE
Confidence              0112345678999999999999999999743221  12223455678899999999999999974 466788899999


Q ss_pred             EecCCCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCC--CCCCCCceeEEE--ecCCChhhHHHHHHHhCcceeeeec
Q psy8225         279 VIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEK--PEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFY  354 (479)
Q Consensus       279 v~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~--~~~~l~~lr~~~--G~~l~~~~~~~~~~~~~~~~v~~~Y  354 (479)
                      ++...+++..+++.++++++|.+.++|+++..|.+....  ....++++|.++  |++++++++++|.+.++. .+++.|
T Consensus       246 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~g~-~v~~~Y  324 (516)
T PRK13383        246 LTHRHFDAEAALAQASLHRADAFTAVPVVLARILELPPRVRARNPLPQLRVVMSSGDRLDPTLGQRFMDTYGD-ILYNGY  324 (516)
T ss_pred             EECCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHhccccccccCCCCceEEEEECCCCCCHHHHHHHHHHcCc-hhhhcc
Confidence            998889999999999999999999999999998875432  123467899877  899999999999999998 899999


Q ss_pred             cccccCcccccC----CCCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCccccc
Q psy8225         355 GATEGNANLMNA----DGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHF  430 (479)
Q Consensus       355 G~tE~~~~~~~~----~~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~~  430 (479)
                      |+||++......    ...++++|+|+|      +++++++|++ ++          ++++|+.|||+++    |+ .++
T Consensus       325 G~tE~~~~~~~~~~~~~~~~~~~G~~~~------~~~~~i~d~~-~~----------~~~~g~~Gel~v~----g~-~~~  382 (516)
T PRK13383        325 GSTEVGIGALATPADLRDAPETVGKPVA------GCPVRILDRN-NR----------PVGPRVTGRIFVG----GE-LAG  382 (516)
T ss_pred             cccccccceeccccccccCCCcccCCCC------CcEEEEECCC-CC----------CCCCCCceEEEEe----cC-ccc
Confidence            999998654422    234567777665      7889999854 44          5688999999998    77 899


Q ss_pred             ccccCcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         431 NGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       431 ~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                      .||++.+..   .+      .+|||+|||+|++|++|++++.||.||++
T Consensus       383 ~~Y~~~~~~---~~------~~g~~~TGDl~~~d~~G~l~i~GR~~~~i  422 (516)
T PRK13383        383 TRYTDGGGK---AV------VDGMTSTGDMGYLDNAGRLFIVGREDDMI  422 (516)
T ss_pred             ccccCCchh---he------ecCceecceeEEEcCCccEEEeccccceE
Confidence            999987532   11      17999999999999999999999999974

>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated

Probab=100.00  E-value=7.8e-51  Score=413.50  Aligned_cols=371  Identities=16%  Similarity=0.151  Sum_probs=284.0

Q ss_pred             hHHHHHHHhhcCCCccccEEE-------Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCcee
Q psy8225          49 ARPLFVRTIREVPMTGAYKYT-------VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVA  120 (479)
Q Consensus        49 l~~~l~~~~~~~p~~~a~~~~-------~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~  120 (479)
                      +.+.|+++++++|+++|+++.       +|| ||.++++++|+.|.++  ++||+|+++++|++++++++|||+++|+++
T Consensus         4 ~~~~l~~~~~~~~~~~a~~~~~~~~~~~~ty~el~~~~~~lA~~L~~~--~~g~~V~l~~~~~~e~~~~~la~~~~G~~~   81 (525)
T PRK05851          4 LAAALSDAMTASGRDLVVLDRESGLWRRHPWPEVHGRAENVAARLLDR--DRPGAVGLVGEPTVELVAAIQGAWLAGAAV   81 (525)
T ss_pred             HHHHHHHHhcCCCCceEEeCCCCCcceeecHHHHHHHHHHHHHHHHhc--CCCCeEEEEcCCCHHHHHHHHHHHHcCCCC
Confidence            678999999999999999876       899 9999999999999988  799999999999999999999999999986


Q ss_pred             eeecCC--------cchHHHHHHHHhccceEEEeChhhHHHHHHhhccCCcceEEecCCCCCCCccCCCccccccccCCc
Q psy8225         121 AFINTN--------QRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPE  192 (479)
Q Consensus       121 v~l~~~--------~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (479)
                      + +++.        ...+++.++++.++++++|++......+.....   .+.   ..+              +......
T Consensus        82 ~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~---~~~---~~~--------------~~~~~~~  140 (525)
T PRK05851         82 S-ILPGPVRGADDGRWADATLTRFAGIGVRTVLSHGSHLERLRAVDS---SVT---VHD--------------LATAAHT  140 (525)
T ss_pred             c-CCCCCCCccchhhHHHHHHHHHHhcCCCEEEeCHHHHHHHHHhhc---ccc---ccc--------------ccccccc
Confidence            5 3332        233556678999999999998776544433211   110   000              0000000


Q ss_pred             CCCCCCcccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcCCC-CCCeEEEeccchhhhhhHHHHHHH
Q psy8225         193 VSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLT-SDDVVYTTLPLYHTAGGLLGIGQC  271 (479)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~-~~d~~~~~~pl~h~~g~~~~~~~~  271 (479)
                      ... .. .  ....++++++|+|||||||.||||+++|.++...+......+++. .+|++++.+|++|.+|+. .++.+
T Consensus       141 ~~~-~~-~--~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~-~~~~~  215 (525)
T PRK05851        141 NRS-AS-L--TPPDSGGPAVLQGTAGSTGTPRTAILSPGAVLSNLRGLNARVGLDAATDVGCSWLPLYHDMGLA-FLLTA  215 (525)
T ss_pred             ccc-cc-C--CCCCCCCeEEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHhCCCCCCCeEEEcCCCccCccHH-HHHHH
Confidence            000 00 0  123568999999999999999999999999999888877778888 899999999999999984 56789


Q ss_pred             HhcCceEEecCC--C--ChhHHHHHHHHhcccEEEEehHHHHHHhcCCC-CCCCCCCceeEEE--ecCCChhhHHHHHHH
Q psy8225         272 LLGGSTVVIRSK--F--SASNFWKDCIKYNCTVAQYIGEMCRYLLAVPE-KPEDTQHSVKMMI--GNGLRPQVWEPFQKR  344 (479)
Q Consensus       272 l~~G~~~v~~~~--~--~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~-~~~~~l~~lr~~~--G~~l~~~~~~~~~~~  344 (479)
                      +..|+++++.+.  +  ++..+++.+.++++|++...|.++..+.+... .....+++||.++  |+++++++.++|.+.
T Consensus       216 l~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~p~~~~~~l~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~  295 (525)
T PRK05851        216 ALAGAPLWLAPTTAFSASPFRWLSWLSDSRATLTAAPNFAYNLIGKYARRVSDVDLGALRVALNGGEPVDCDGFERFATA  295 (525)
T ss_pred             HHcCCeEEEcCHHHHHHCHHHHHHHHHHhCCeEEeCCcHHHHHHHHhhccccCCCHHHhheeEeccccCCHHHHHHHHHH
Confidence            999999998762  4  57789999999999987554444444433221 2234578899876  899999999999875


Q ss_pred             ---hCc--ceeeeeccccccCcccccC-C-----------------CCCCcccccCccccCCCceeeEEeCCCCCCcccc
Q psy8225         345 ---FGL--DRICEFYGATEGNANLMNA-D-----------------GKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRN  401 (479)
Q Consensus       345 ---~~~--~~v~~~YG~tE~~~~~~~~-~-----------------~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~  401 (479)
                         +|.  ..+++.||+||++..+... +                 .+.+++|+|++      +++++++|++++.    
T Consensus       296 ~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~------g~~v~i~d~~~~~----  365 (525)
T PRK05851        296 MAPFGFDAGAAAPSYGLAESTCAVTVPVPGIGLRVDEVTTDDGSGARRHAVLGNPIP------GMEVRISPGDGAA----  365 (525)
T ss_pred             HhhcCCChhhcccccchhhhceEEEecCCCCCceeeeeccccCcccceeeeecCCCC------CcEEEEECCCCCc----
Confidence               443  2599999999997654321 1                 12245566554      8999999876544    


Q ss_pred             CCCccccccCCCCceEEEEeecCCcccccccccCcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         402 KDGLCIPCKAEEPGILIGMIKESRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       402 ~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                            +++.|+.|||+++    |+ +++.||++++..+          .+|||+|||+|++| +|+|+|+||+||++
T Consensus       366 ------~~~~g~~GEl~v~----g~-~~~~GY~~~~~~~----------~~~~~~TGDl~~~~-~G~l~~~GR~dd~i  421 (525)
T PRK05851        366 ------GVAGREIGEIEIR----GA-SMMSGYLGQAPID----------PDDWFPTGDLGYLV-DGGLVVCGRAKELI  421 (525)
T ss_pred             ------cCCCCCeEEEEEe----cC-chhhccccCCccC----------CCCceeccceEEEE-CCEEEEEeecCCEE
Confidence                  4688999999998    77 8999999987532          27899999999997 79999999999985

>PRK08162 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.3e-49  Score=407.26  Aligned_cols=404  Identities=21%  Similarity=0.241  Sum_probs=302.9

Q ss_pred             ccchhHHHHHHHhhcCCCccccEEE---Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCcee
Q psy8225          45 LPTYARPLFVRTIREVPMTGAYKYT---VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVA  120 (479)
Q Consensus        45 ~~~~l~~~l~~~~~~~p~~~a~~~~---~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~  120 (479)
                      .+.++.++|++.++.+|+++|+.+.   +|| ||.+++.++|..|.+.|+++||+|+++++|++++++++|||+++|+++
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ty~~L~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~lA~~~~G~~~   95 (545)
T PRK08162         16 VPLTPLSFLERAAEVYPDRPAVIHGDRRRTWAETYARCRRLASALARRGIGRGDTVAVLLPNIPAMVEAHFGVPMAGAVL   95 (545)
T ss_pred             ccCCHHHHHHHHHHHCCCCeEEEECCeEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHhCcEE
Confidence            4466789999999999999999886   999 999999999999999999999999999999999999999999999999


Q ss_pred             eeecCCcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCCcceEEecCCCCC-CCccCCCccccccccCCcCCCCCCc
Q psy8225         121 AFINTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRK-PQAKVLPSTTLLDEELPEVSAKSPT  199 (479)
Q Consensus       121 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  199 (479)
                      +|+++..+.+++.++++.++++.++++.+....+.+.....+..+.+.+..... ...........+++++.........
T Consensus        96 vpl~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (545)
T PRK08162         96 NTLNTRLDAASIAFMLRHGEAKVLIVDTEFAEVAREALALLPGPKPLVIDVDDPEYPGGRFIGALDYEAFLASGDPDFAW  175 (545)
T ss_pred             eccccccChHHHHHHHHhCCCeEEEEccchhhHHHHHHhhCCCCceEEEecCccccccCCCcccccHHHHhccCCccccc
Confidence            999999999999999999999999999887766665544333322222221110 0000001122333333322111111


Q ss_pred             ccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcCCCCCCeEEEeccchhhhhhHHHHHHHHhcCceEE
Q psy8225         200 EDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVV  279 (479)
Q Consensus       200 ~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G~~~v  279 (479)
                      .  ......++++++|||||||.||||+++|+++...+......+.+..++++++.+|++|.+|+...+...+. |++.+
T Consensus       176 ~--~~~~~~~~~~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~~~~~~~~~~~~-~g~~~  252 (545)
T PRK08162        176 T--LPADEWDAIALNYTSGTTGNPKGVVYHHRGAYLNALSNILAWGMPKHPVYLWTLPMFHCNGWCFPWTVAAR-AGTNV  252 (545)
T ss_pred             c--CCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCCCCCCeeEeccCcHhhhhHHHHHHHHHH-ccEEE
Confidence            0  12234578999999999999999999999887666555556678888999999999999987665554554 44555


Q ss_pred             ecCCCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCC-ceeEEE-ecCCChhhHHHHHHHhCcceeeeecccc
Q psy8225         280 IRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQH-SVKMMI-GNGLRPQVWEPFQKRFGLDRICEFYGAT  357 (479)
Q Consensus       280 ~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~-~lr~~~-G~~l~~~~~~~~~~~~~~~~v~~~YG~t  357 (479)
                      +...+++..+++.++++++|++.++|++++.|++........+. .++.+. |+.+++++.+.+++ ++. ++++.||+|
T Consensus       253 ~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~-~~~~~YG~t  330 (545)
T PRK08162        253 CLRKVDPKLIFDLIREHGVTHYCGAPIVLSALINAPAEWRAGIDHPVHAMVAGAAPPAAVIAKMEE-IGF-DLTHVYGLT  330 (545)
T ss_pred             EeCCCCHHHHHHHHHHcCCeEEEechHHHHHHHhCccccccCCccceEEEECCCCCCHHHHHHHHH-hCC-ceeeccccc
Confidence            55678999999999999999999999999999876544332333 344444 88899999988876 587 899999999


Q ss_pred             ccCcccccCCC--------------CCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccC-C-CCceEEEEe
Q psy8225         358 EGNANLMNADG--------------KVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKA-E-EPGILIGMI  421 (479)
Q Consensus       358 E~~~~~~~~~~--------------~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~-~-~~Gel~v~~  421 (479)
                      |+++.+.....              ..++.|.+.+   .  ...+.++|+++++          +++. | +.|||+++ 
T Consensus       331 E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~--~~~~~i~d~~~~~----------~~~~~g~~~Gel~v~-  394 (545)
T PRK08162        331 ETYGPATVCAWQPEWDALPLDERAQLKARQGVRYP---L--QEGVTVLDPDTMQ----------PVPADGETIGEIMFR-  394 (545)
T ss_pred             ccCcceeecccccccccCCccchhhccCCCCcccC---C--cceEEEEcCCCCc----------ccCCCCCceeEEEEe-
Confidence            98643322110              1123333222   1  2346677876665          4444 3 46999998 


Q ss_pred             ecCCcccccccccCcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         422 KESRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       422 ~~~~~~~~~~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                         |+ .++.||+++++.+...+.      +|||+|||+|++|+||+++++||.||++
T Consensus       395 ---g~-~~~~gY~~~~~~~~~~~~------~g~~~TGDl~~~d~dg~l~~~GR~~~~i  442 (545)
T PRK08162        395 ---GN-IVMKGYLKNPKATEEAFA------GGWFHTGDLAVLHPDGYIKIKDRSKDII  442 (545)
T ss_pred             ---cC-cchhhhcCChhhhHHHhh------CCCcccCceEEEcCCccEEEEecccceE
Confidence               77 899999999888877664      7899999999999999999999999974

>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1

Probab=100.00  E-value=1.3e-49  Score=403.38  Aligned_cols=381  Identities=20%  Similarity=0.255  Sum_probs=306.1

Q ss_pred             hHHHHHHHhhcCCCccccEEE---Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCceeeeec
Q psy8225          49 ARPLFVRTIREVPMTGAYKYT---VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFIN  124 (479)
Q Consensus        49 l~~~l~~~~~~~p~~~a~~~~---~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~l~  124 (479)
                      +.+.|.+.+..+|+++|+.+.   +|| ||.+++.++|..|.+.|+++|++|+++++|+.++++++|||+++|++++|++
T Consensus         2 ~~~~l~~~a~~~p~~~a~~~~~~~~ty~el~~~~~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~v~~~   81 (502)
T TIGR01734         2 LIEAIQAFAETYPQTIAYRYQGQELTYQQLKEQSDRLAAFIQKRILPKKSPIIVYGHMEPHMLVAFLGSIKSGHAYIPVD   81 (502)
T ss_pred             HHHHHHHHHHHCCCceEEEcCCcEEeHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCEEeCCC
Confidence            678999999999999999887   999 9999999999999999999999999999999999999999999999999999


Q ss_pred             CCcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCCcceEEecCCCCCCCccCCCccccccccCCcCCCCCCcccccC
Q psy8225         125 TNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTEDIKK  204 (479)
Q Consensus       125 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (479)
                      +.++.+++.++++..+++.++++........       ...++....              .............   ...
T Consensus        82 ~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~-------~~~~~~~~~--------------~~~~~~~~~~~~~---~~~  137 (502)
T TIGR01734        82 TSIPSERIEMIIEAAGPELVIHTAELSIDAV-------GTQIITLSA--------------LEQAETSGGPVSF---DHA  137 (502)
T ss_pred             CcChHHHHHHHHHhcCCCEEEeccccccccc-------CCceEEchH--------------hhhhhhhcCCccc---ccc
Confidence            9999999999999999999999875432211       111111110              0111111100000   022


Q ss_pred             CCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcCCCCCCeEEEeccchhhhhhHHHHHHHHhcCceEEecCC-
Q psy8225         205 NKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSK-  283 (479)
Q Consensus       205 ~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~-  283 (479)
                      ...++.++++|||||||.||+|+++|+++...+......++...++++++.+|++|..++ ..++.++..|+++++.+. 
T Consensus       138 ~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~-~~~~~~l~~G~~~~~~~~~  216 (502)
T TIGR01734       138 VKGDDNYYIIYTSGSTGNPKGVQISHDNLVSFTNWMLADFPLSEGKQFLNQAPFSFDLSV-MDLYPCLASGGTLHCLDKD  216 (502)
T ss_pred             CCCCCeEEEEECCCCCCCCCEEEEecHHHHHHHHHHHHhCCCCCCceEEeecCceechhH-HHHHHHHHCCCEEEEcCHH
Confidence            356789999999999999999999999999888877777888899999999999999876 567789999999998774 


Q ss_pred             --CChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEE--ecCCChhhHHHHHHHhCcceeeeecccccc
Q psy8225         284 --FSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFYGATEG  359 (479)
Q Consensus       284 --~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~--G~~l~~~~~~~~~~~~~~~~v~~~YG~tE~  359 (479)
                        .++..+++.+.+++++.+..+|++++.+..........+++++.++  |+++++++.+++.+.++...+++.||+||+
T Consensus       217 ~~~~~~~~~~~i~~~~~~~~~~~p~~~~~~l~~~~~~~~~~~~l~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~yG~tE~  296 (502)
T TIGR01734       217 ITNNFKLLFEELPKTGLNVWVSTPSFVDMCLLDPNFNQENYPHLTHFLFCGEELPVKTAKALLERFPKATIYNTYGPTEA  296 (502)
T ss_pred             HhcCHHHHHHHHHHcCCeEEEEChhHHHHHHhccccccccCCcccEEEEcCCcCCHHHHHHHHHHCCCcEEEeCccCCcc
Confidence              4788999999999999999999999887765444444577888766  889999999999999854499999999998


Q ss_pred             CcccccC--------CCCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCcccccc
Q psy8225         360 NANLMNA--------DGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFN  431 (479)
Q Consensus       360 ~~~~~~~--------~~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~  431 (479)
                      ++.+...        .....++|.+.+      ++++.++|++ +.          +++.|+.|||+++    |+ .++.
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~vg~~~~------~~~~~i~~~~-~~----------~~~~g~~Gel~v~----g~-~~~~  354 (502)
T TIGR01734       297 TVAVTSVKITQEILDQYPRLPIGFAKP------DMNLFIMDEE-GE----------PLPEGEKGEIVIV----GP-SVSK  354 (502)
T ss_pred             eEEEEEEEccccccccCCccccccccC------CCEEEEECCC-CC----------CCCCCCeeEEEEc----cc-cccc
Confidence            7544321        122234565544      7999999865 44          5688999999998    77 8999


Q ss_pred             cccCcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         432 GYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       432 gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                      ||+++++.+.+.+.+  .++.+||+|||+|++|++ +++++||.||++
T Consensus       355 gy~~~~~~~~~~~~~--~~~~~~~~TGDlg~~~~~-~l~i~GR~~d~i  399 (502)
T TIGR01734       355 GYLNNPEKTAEAFFS--HEGQPAYRTGDAGTITDG-QLFYQGRLDFQI  399 (502)
T ss_pred             cccCCcccchHhhee--CCCcEEEECCCEEEEECC-EEEEeccccCeE
Confidence            999988777655421  234579999999999977 999999999974

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides.

>PRK12316 peptide synthase; Provisional

Probab=100.00  E-value=4.9e-50  Score=485.87  Aligned_cols=388  Identities=17%  Similarity=0.221  Sum_probs=318.4

Q ss_pred             cchhHHHHHHHhhcCCCccccEEE---Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCceee
Q psy8225          46 PTYARPLFVRTIREVPMTGAYKYT---VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAA  121 (479)
Q Consensus        46 ~~~l~~~l~~~~~~~p~~~a~~~~---~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v  121 (479)
                      +.++.++|.++++++|+++|+++.   +|| ||.++++++|+.|.+.|+++|++|+++++|++++++++|||+++|++++
T Consensus       510 ~~~~~~~~~~~a~~~p~~~A~~~~~~~~TY~eL~~~~~~lA~~L~~~gv~~g~~V~l~~~~s~~~i~~~la~~~aG~~~v  589 (5163)
T PRK12316        510 QRGVHRLFEEQVERTPEAPALAFGEETLDYAELNRRANRLAHALIERGVGPDVLVGVAMERSIEMVVALLAILKAGGAYV  589 (5163)
T ss_pred             CCCHHHHHHHHHHHCCCCeEEEeCCceEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcCCEEe
Confidence            367999999999999999999987   999 9999999999999999999999999999999999999999999999999


Q ss_pred             eecCCcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCCcceEEecCCCCCCCccCCCccccccccCCcCCCCCCccc
Q psy8225         122 FINTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTED  201 (479)
Q Consensus       122 ~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (479)
                      |++|.++.+++.+++++++++++|++......+.    ......++..+...              ..+........   
T Consensus       590 pld~~~p~~rl~~il~~~~~~~~l~~~~~~~~~~----~~~~~~~~~~~~~~--------------~~~~~~~~~~~---  648 (5163)
T PRK12316        590 PLDPEYPAERLAYMLEDSGVQLLLSQSHLGRKLP----LAAGVQVLDLDRPA--------------AWLEGYSEENP---  648 (5163)
T ss_pred             ccCccCcHHHHHHHHHhCCCCEEEEChhhhhhCC----cccCceEEEecCcc--------------hhhccCCCCCC---
Confidence            9999999999999999999999999876443221    11122233222110              00000011111   


Q ss_pred             ccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcCCCCCCeEEEeccchhhhhhHHHHHHHHhcCceEEec
Q psy8225         202 IKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIR  281 (479)
Q Consensus       202 ~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G~~~v~~  281 (479)
                      .....++++++|+|||||||.||||+++|+++.+.+.+....+++..++++++.+|++|..+. ..++.++..|+++++.
T Consensus       649 ~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~p~~fd~~~-~~~~~~L~~G~~l~i~  727 (5163)
T PRK12316        649 GTELNPENLAYVIYTSGSTGKPKGAGNRHRALSNRLCWMQQAYGLGVGDTVLQKTPFSFDVSV-WEFFWPLMSGARLVVA  727 (5163)
T ss_pred             CCCCCCCCeEEEEECCCcCCCCCEeeEcCHHHHHHHHHHHHhcCCCCCCEEEeeCCeehHHHH-HHHHHHHhCCCEEEEC
Confidence            123457889999999999999999999999999999988888999999999999999999986 6688899999999997


Q ss_pred             C---CCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEE--ecCCChhhHHHHHHHhCcceeeeeccc
Q psy8225         282 S---KFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFYGA  356 (479)
Q Consensus       282 ~---~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~--G~~l~~~~~~~~~~~~~~~~v~~~YG~  356 (479)
                      +   .+++..+++.++++++|++.++|++++.|.+....  ..++++|.++  |+++++++.++|.+.++..++++.||+
T Consensus       728 ~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~--~~~~~l~~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~  805 (5163)
T PRK12316        728 APGDHRDPAKLVELINREGVDTLHFVPSMLQAFLQDEDV--ASCTSLRRIVCSGEALPADAQEQVFAKLPQAGLYNLYGP  805 (5163)
T ss_pred             CccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhcccc--ccCCCccEEEEeeccCCHHHHHHHHHhCCCCeEEeCcCc
Confidence            5   46899999999999999999999999999865432  2467888776  899999999999887765599999999


Q ss_pred             cccCcccccC-----CCCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCcccccc
Q psy8225         357 TEGNANLMNA-----DGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFN  431 (479)
Q Consensus       357 tE~~~~~~~~-----~~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~  431 (479)
                      ||++..+...     .....++|+|      +++++++|+|++ ++          +|+.|+.|||+++    |+ +++.
T Consensus       806 TE~~~~~~~~~~~~~~~~~~~iG~p------~~~~~~~i~d~~-~~----------~~p~G~~GEl~i~----G~-~v~~  863 (5163)
T PRK12316        806 TEAAIDVTHWTCVEEGGDSVPIGRP------IANLACYILDAN-LE----------PVPVGVLGELYLA----GR-GLAR  863 (5163)
T ss_pred             ChheeeeeEEecccccCCCCCCccc------cCCCEEEEECCC-CC----------CCCCCCceEEEec----cc-ccCh
Confidence            9998543321     1223345554      448999999965 44          6799999999998    88 9999


Q ss_pred             cccCcchhHHHHH-hhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         432 GYADKKASEKKIL-RNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       432 gY~~~~~~~~~~~-~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                      ||+|+++.+.+.| .++|.++++||+|||+|++|+||+|+|+||+||+|
T Consensus       864 GYl~~~~~t~~~f~~~~~~~~~~~y~TGDl~~~~~dG~l~~~GR~d~~i  912 (5163)
T PRK12316        864 GYHGRPGLTAERFVPSPFVAGERMYRTGDLARYRADGVIEYAGRIDHQV  912 (5163)
T ss_pred             hhCCChhhhhhhCCCCCCCCCCeeEecCccEEECCCCCEEeecccCCEE
Confidence            9999987776544 44455667899999999999999999999999985

>PRK05850 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.9e-49  Score=408.59  Aligned_cols=393  Identities=17%  Similarity=0.237  Sum_probs=292.1

Q ss_pred             hhHHHHHHHhhcCCCccccEE-----------E-Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhh
Q psy8225          48 YARPLFVRTIREVPMTGAYKY-----------T-VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLS  114 (479)
Q Consensus        48 ~l~~~l~~~~~~~p~~~a~~~-----------~-~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~  114 (479)
                      ++.++|++++..+|+++|+++           . +|| ||.+++.++|++|.++| .+||+|+++++|++++++++|||+
T Consensus         2 s~~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~lty~eL~~~v~~~A~~L~~~g-~~gd~V~l~~~n~~~~~~~~lA~~   80 (578)
T PRK05850          2 SVPSLLRERASLQPDDAAFTFIDYEQDPAGVAETLTWSQLYRRTLNVAEELRRHG-STGDRAVILAPQGLEYIVAFLGAL   80 (578)
T ss_pred             cHHHHHHHHHhcCCCceEEEEEccCCCCCCceeeecHHHHHHHHHHHHHHHHHhC-CCCCEEEEEcCCcccHHHHHHHHH
Confidence            477899999999999999984           3 999 99999999999999999 689999999999999999999999


Q ss_pred             hcCceeeeecC---CcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCC---cceEEecCCCCCCCccCCCccccccc
Q psy8225         115 KIGVVAAFINT---NQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIP---GISLYAAGTRRKPQAKVLPSTTLLDE  188 (479)
Q Consensus       115 ~~G~~~v~l~~---~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (479)
                      ++|++++|+++   ..+.+++.++++++++++++++++....+.+......   ...++..+..               +
T Consensus        81 ~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~  145 (578)
T PRK05850         81 QAGLIAVPLSVPQGGAHDERVSAVLRDTSPSVVLTTSAVVDDVTEYVAPQPGQSAPPVIEVDLL---------------D  145 (578)
T ss_pred             HcCceEEecCCCCccchHHHHHHHHHhcCCCEEEEcHHHHHHHHHHHhhcccccccceEeeccc---------------c
Confidence            99999999997   4578899999999999999999876665544322111   0111111100               0


Q ss_pred             cCCcCCCCCCcccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhh-cC-----CCCCCeEEEeccchhhh
Q psy8225         189 ELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQ-TG-----LTSDDVVYTTLPLYHTA  262 (479)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~-~~-----~~~~d~~~~~~pl~h~~  262 (479)
                      .... .  ...  ......+++++++|||||||.||||+++|++++..+...... +.     ...++++++.+|++|..
T Consensus       146 ~~~~-~--~~~--~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~  220 (578)
T PRK05850        146 LDSP-R--GSD--ARPRDLPSTAYLQYTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGGVPPPDTTVVSWLPFYHDM  220 (578)
T ss_pred             cccC-C--ccc--cCCCCCCCeEEEEeCCCCCCCCceEEEeHHHHHHHHHHHHHhhccccccCCCCcceEEEECCCCCCc
Confidence            0000 0  000  023456889999999999999999999999998776554432 12     35578999999999999


Q ss_pred             hhHHHHHHHHhcCceEEecCCC----ChhHHHHHHHHhcccEEEEehHHHH-HHhcCC---CCCCCCCCceeEEE--ecC
Q psy8225         263 GGLLGIGQCLLGGSTVVIRSKF----SASNFWKDCIKYNCTVAQYIGEMCR-YLLAVP---EKPEDTQHSVKMMI--GNG  332 (479)
Q Consensus       263 g~~~~~~~~l~~G~~~v~~~~~----~~~~~~~~i~~~~~t~~~~~p~~l~-~l~~~~---~~~~~~l~~lr~~~--G~~  332 (479)
                      |++..++.++..|+++++.+..    ++..+++.+.+++++.. .+|.++. .+....   ......++++|.++  |++
T Consensus       221 g~~~~~~~~l~~G~~~~~~~~~~~~~~p~~~~~~i~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~lr~~~~gg~~  299 (578)
T PRK05850        221 GLVLGVCAPILGGCPAVLTSPVAFLQRPARWMQLLASNPHAFS-AAPNFAFELAVRKTSDDDMAGLDLGGVLGIISGSER  299 (578)
T ss_pred             hhHHHHHHHHhcCCcEEEeCHHHHHHCHHHHHHHHHHcCCeEE-eCCcHHHHHHHHhcchhhhcCcchhhheeEEECcCC
Confidence            9888889999999999987642    68899999999999855 5665543 333221   11233567899877  788


Q ss_pred             CChhhHHHHHHHhCc-----ceeeeeccccccCcccccCC-CC----------CCcccccC-----------ccccCCCc
Q psy8225         333 LRPQVWEPFQKRFGL-----DRICEFYGATEGNANLMNAD-GK----------VGAVGYIP-----------YIAIPFYP  385 (479)
Q Consensus       333 l~~~~~~~~~~~~~~-----~~v~~~YG~tE~~~~~~~~~-~~----------~~~~g~~~-----------~~~~~~~~  385 (479)
                      +++++.++|.+.|+.     ..+++.||+||++..+.... ..          ..+.|.+.           ..+.+. +
T Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~g~p~-~  378 (578)
T PRK05850        300 VHPATLKRFADRFAPFNLRETAIRPSYGLAEATVYVATREPGQPPESVRFDYEKLSAGHAKRCETGGGTPLVSYGSPR-S  378 (578)
T ss_pred             CCHHHHHHHHHHHHhcCcCcccccCccchhhhhhheeccCCCCCceEEEECHHHHhCCceEecCCCCCceEEeccCCC-C
Confidence            999999999988742     26899999999875443211 00          00122111           111121 3


Q ss_pred             eeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCcccccccccCcchhHHHHHhhhcc------CCCcEEEcCC
Q psy8225         386 VGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNGYADKKASEKKILRNVYS------HGDAAFNTGD  459 (479)
Q Consensus       386 ~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~gY~~~~~~~~~~~~~~~~------~~~g~~~TGD  459 (479)
                      .+++++|++++.          +|+.|+.|||+++    |+ +++.||+++++.+.+.|.....      .++|||+|||
T Consensus       379 ~~~~ivd~~~~~----------~~~~g~~Gel~v~----g~-~~~~gY~~~~~~t~~~f~~~~~~~~~~~~~~~w~~TGD  443 (578)
T PRK05850        379 PTVRIVDPDTCI----------ECPAGTVGEIWVH----GD-NVAAGYWQKPEETERTFGATLVDPSPGTPEGPWLRTGD  443 (578)
T ss_pred             CEEEEEcCCCCc----------CCCCCCEEEEEEe----cC-cccccccCChhhhHHHhhcccccccccCCCCCeeeccc
Confidence            677888876555          6789999999998    77 8999999998888776632111      1257999999


Q ss_pred             eeEEecCCcEEEecCCCCCC
Q psy8225         460 ILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       460 ~g~~d~dG~l~~~GR~~d~~  479 (479)
                      +|++| ||+|+++||+||++
T Consensus       444 l~~~~-~G~l~~~GR~~d~i  462 (578)
T PRK05850        444 LGFIS-EGELFIVGRIKDLL  462 (578)
T ss_pred             eeeEE-CCEEEEEcccccEE
Confidence            99998 99999999999974

>PRK08974 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=7.7e-49  Score=402.58  Aligned_cols=402  Identities=22%  Similarity=0.273  Sum_probs=309.7

Q ss_pred             chhHHHHHHHhhcCCCccccEEE---Eeh-hhHHHHHHHHHHHHH-cCCCCCCEEEEEcCCchHHHHHHHHhhhcCceee
Q psy8225          47 TYARPLFVRTIREVPMTGAYKYT---VTF-QVEDHSNRIANFFKS-KGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAA  121 (479)
Q Consensus        47 ~~l~~~l~~~~~~~p~~~a~~~~---~Ty-~l~~~~~~la~~L~~-~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v  121 (479)
                      .++.++|.++++++|+++|+++.   +|| ||.++++++|..|.+ .|+++|++|+++++|++++++++|||+++|++++
T Consensus        23 ~~l~~~l~~~a~~~p~~~a~~~~~~~lTy~~l~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v  102 (560)
T PRK08974         23 QSLVDMFEQAVARYADQPAFINMGEVMTFRKLEERSRAFAAYLQNGLGLKKGDRVALMMPNLLQYPIALFGILRAGMIVV  102 (560)
T ss_pred             ccHHHHHHHHHHhCCCCceEEECCccccHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEe
Confidence            45889999999999999999987   999 999999999999985 7999999999999999999999999999999999


Q ss_pred             eecCCcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCCcceEEecCCCCCCCccC-------------------CCc
Q psy8225         122 FINTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKV-------------------LPS  182 (479)
Q Consensus       122 ~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~  182 (479)
                      |++|..+.+++.++++.+++++++++.+....+.++........++............                   ...
T Consensus       103 ~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (560)
T PRK08974        103 NVNPLYTPRELEHQLNDSGAKAIVIVSNFAHTLEKVVFKTPVKHVILTRMGDQLSTAKGTLVNFVVKYIKRLVPKYHLPD  182 (560)
T ss_pred             ccCccCCHHHHHHHHHhcCceEEEEeccccHHHHHHhhhcCcceEEEecccccccccccccccchhhhcccccccccCCC
Confidence            9999999999999999999999999876555554443322211111111000000000                   000


Q ss_pred             cccccccCCcCCCCCCcccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhc---CCCCCCeEEEeccch
Q psy8225         183 TTLLDEELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQT---GLTSDDVVYTTLPLY  259 (479)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~d~~~~~~pl~  259 (479)
                      ...+.+.........  ........+++++++|||||||.||+|.++|.++...+......+   ....++.++..+|++
T Consensus       183 ~~~~~~~~~~~~~~~--~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  260 (560)
T PRK08974        183 AISFRSALHKGRRMQ--YVKPELVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAYGPLLHPGKELVVTALPLY  260 (560)
T ss_pred             cccHHHHhhccCCCC--CCCCCCCCCCeEEEEECCCCCCCCcEEEEchHHHHHHHHHHHHhhccccCCCccEEEEeCcHH
Confidence            000011111010000  001224578899999999999999999999999987655433222   234467888999999


Q ss_pred             hhhhhHHHHHHHHhcCceEEecC-CCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEE--ecCCChh
Q psy8225         260 HTAGGLLGIGQCLLGGSTVVIRS-KFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQ  336 (479)
Q Consensus       260 h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~--G~~l~~~  336 (479)
                      |.+++....+..+..|+++++.. ..++..+++.++++++|.+..+|++++.|..........++++|.++  |+++++.
T Consensus       261 ~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~gg~~~~~~  340 (560)
T PRK08974        261 HIFALTVNCLLFIELGGQNLLITNPRDIPGFVKELKKYPFTAITGVNTLFNALLNNEEFQELDFSSLKLSVGGGMAVQQA  340 (560)
T ss_pred             HHHHHHHHHHHHhhcCCeEEEecCccCHHHHHHHHHhcCcceEcCcHHHHHHHHhCcCcccCCccceeEEEecCccCCHH
Confidence            99998776777788888876654 56788999999999999999999999999887655555678899877  7889999


Q ss_pred             hHHHHHHHhCcceeeeeccccccCcccccCC----CCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCC
Q psy8225         337 VWEPFQKRFGLDRICEFYGATEGNANLMNAD----GKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAE  412 (479)
Q Consensus       337 ~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~----~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~  412 (479)
                      +.++|++.+|. .+++.||+||++..+....    ..++++|.|+|      ++.++++|++ +.          +++.|
T Consensus       341 ~~~~~~~~~g~-~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~------~~~~~i~~~~-~~----------~~~~g  402 (560)
T PRK08974        341 VAERWVKLTGQ-YLLEGYGLTECSPLVSVNPYDLDYYSGSIGLPVP------STEIKLVDDD-GN----------EVPPG  402 (560)
T ss_pred             HHHHHHHHhCC-cEEeeecccccCceeeccCCCCcccCCccccCcC------CCEEEEECCC-CC----------CCCCC
Confidence            99999999998 8999999999886654322    23456676654      7889988854 44          56889


Q ss_pred             CCceEEEEeecCCcccccccccCcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         413 EPGILIGMIKESRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       413 ~~Gel~v~~~~~~~~~~~~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                      +.|||+++    |+ .++.||+++++.+.+.+.      +|||+|||+|++|++|++++.||.||++
T Consensus       403 ~~Gel~v~----g~-~~~~gy~~~~~~~~~~~~------~g~~~TGDl~~~~~~g~l~i~GR~~d~i  458 (560)
T PRK08974        403 EPGELWVK----GP-QVMLGYWQRPEATDEVIK------DGWLATGDIAVMDEEGFLRIVDRKKDMI  458 (560)
T ss_pred             CceEEEEe----cC-CcchhhcCChhhhhhhhh------cCCcccCCEEEEcCCceEEEEecccceE
Confidence            99999998    77 899999998877776553      7899999999999999999999999974

>PRK12467 peptide synthase; Provisional

Probab=100.00  E-value=1.5e-49  Score=474.56  Aligned_cols=388  Identities=18%  Similarity=0.215  Sum_probs=317.0

Q ss_pred             chhHHHHHHHhhcCCCccccEEE---Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCceeee
Q psy8225          47 TYARPLFVRTIREVPMTGAYKYT---VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAF  122 (479)
Q Consensus        47 ~~l~~~l~~~~~~~p~~~a~~~~---~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~  122 (479)
                      .++.++|.++++.+|+++|+++.   +|| ||.++++++|+.|.++|+++|++|+++++|++++++++|||+++|++++|
T Consensus      1574 ~~~~~~~~~~a~~~p~~~Av~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~~~~V~l~~~~s~~~vv~~lavlkaG~~~vp 1653 (3956)
T PRK12467       1574 RLVHQLIEDQAAATPEAVALVFGEQELTYGELNRRANRLAHRLIALGVGPEVLVGIAVERSLEMVVGLLAILKAGGAYVP 1653 (3956)
T ss_pred             ccHHHHHHHHHHhCCCCeEEEeCCcEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCCHHHHHHHHHhhccCceeee
Confidence            57899999999999999999987   999 99999999999999999999999999999999999999999999999999


Q ss_pred             ecCCcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCCcceEEecCCCCCCCccCCCccccccccCCcCCCCCCcccc
Q psy8225         123 INTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTEDI  202 (479)
Q Consensus       123 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (479)
                      ++|.++.+++.++++++++++++++......+.    ......++.++...              ..+.......+   .
T Consensus      1654 ldp~~p~~rl~~il~~~~~~~~l~~~~~~~~~~----~~~~~~~~~~~~~~--------------~~~~~~~~~~~---~ 1712 (3956)
T PRK12467       1654 LDPEYPRERLAYMIEDSGIELLLTQSHLQARLP----LPDGLRSLVLDQED--------------DWLEGYSDSNP---A 1712 (3956)
T ss_pred             cCCCCCHHHHHHHHHhCCCCEEEeChhhhhhCc----cccCCcEEEecccc--------------chhccCCCCCC---C
Confidence            999999999999999999999999876443221    11122233222111              00011111111   1


Q ss_pred             cCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcCCCCCCeEEEeccchhhhhhHHHHHHHHhcCceEEecC
Q psy8225         203 KKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRS  282 (479)
Q Consensus       203 ~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G~~~v~~~  282 (479)
                      ....++++++|+|||||||+||||+++|+++.+.+......+++..+|++++..|++|..+. +.++.++..|+++++.+
T Consensus      1713 ~~~~~~~~ayiiyTSGSTG~PKGV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~-~~~~~~L~~G~~lvi~~ 1791 (3956)
T PRK12467       1713 VNLAPQNLAYVIYTSGSTGRPKGAGNRHGALVNRLCATQEAYQLSAADVVLQFTSFAFDVSV-WELFWPLINGARLVIAP 1791 (3956)
T ss_pred             CCCCCcCcEEEEECCCcCCCCCEEEEcCHHHHHHHHHHHHhcCCCcccEEEEecCccHHHHH-HHHHHHHhCCCEEEEcC
Confidence            23457889999999999999999999999999998888888899999999999999999885 67888999999999976


Q ss_pred             C---CChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEE--ecCCChhhHHHHHHHhCcceeeeecccc
Q psy8225         283 K---FSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFYGAT  357 (479)
Q Consensus       283 ~---~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~--G~~l~~~~~~~~~~~~~~~~v~~~YG~t  357 (479)
                      .   .++..+++.|+++++|++.++|++++.|.+.... ...+++||.++  |+++++++.+.|.+.++...+++.||+|
T Consensus      1792 ~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~-~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~T 1870 (3956)
T PRK12467       1792 PGAHRDPEQLIQLIERQQVTTLHFVPSMLQQLLQMDEQ-VEHPLSLRRVVCGGEALEVEALRPWLERLPDTGLFNLYGPT 1870 (3956)
T ss_pred             hhhcCCHHHHHHHHHHcCCeEEECCHHHHHHHHhhccc-cccCCCceEEEEccccCCHHHHHHHHHhCCCCeEEeCccCC
Confidence            3   4789999999999999999999999999875322 23467899876  8999999999999988755899999999


Q ss_pred             ccCcccccCC--------CCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCcccc
Q psy8225         358 EGNANLMNAD--------GKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESH  429 (479)
Q Consensus       358 E~~~~~~~~~--------~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~  429 (479)
                      |++..++...        ....++|+|      ++++++.++|++ ++          +|+.|..|||+++    |+ ++
T Consensus      1871 E~t~~~t~~~~~~~~~~~~~~~~iG~p------~~~~~~~vld~~-~~----------~vp~G~~GEl~i~----G~-~v 1928 (3956)
T PRK12467       1871 ETAVDVTHWTCRRKDLEGRDSVPIGQP------IANLSTYILDAS-LN----------PVPIGVAGELYLG----GV-GL 1928 (3956)
T ss_pred             cCEEeEEEEeccccccccCCCCCcccc------cCCCEEEEECCC-CC----------CCCCCCceEEEec----cc-cc
Confidence            9986554211        112345554      448999999854 44          6799999999998    77 99


Q ss_pred             cccccCcchhHHHHH-hhhcc-CCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         430 FNGYADKKASEKKIL-RNVYS-HGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       430 ~~gY~~~~~~~~~~~-~~~~~-~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                      +.||+|+++.+.+.| .++|. ++++||+|||+|++++||.|+|+||+||+|
T Consensus      1929 ~~GYl~~p~~t~~~f~~~p~~~~~~r~yrTGDl~~~~~dG~l~~~GR~D~qV 1980 (3956)
T PRK12467       1929 ARGYLNRPALTAERFVADPFGTVGSRLYRTGDLARYRADGVIEYLGRIDHQV 1980 (3956)
T ss_pred             cccccCChhhhhhhCcCCCCCCCCccceeccceEEECCCCCEEEecccCceE
Confidence            999999988777655 34443 256799999999999999999999999986

>PRK12316 peptide synthase; Provisional

Probab=100.00  E-value=1.8e-49  Score=480.94  Aligned_cols=392  Identities=16%  Similarity=0.160  Sum_probs=315.9

Q ss_pred             chhHHHHHHHhhcCCCccccEEE---Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCceeee
Q psy8225          47 TYARPLFVRTIREVPMTGAYKYT---VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAF  122 (479)
Q Consensus        47 ~~l~~~l~~~~~~~p~~~a~~~~---~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~  122 (479)
                      .++.++|.++++.+|+++|+++.   +|| ||.++++++|..|.+.|+++|++|+++++|++++++++|||+++|++++|
T Consensus      2003 ~~~~~~~~~~a~~~p~~~A~~~~~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~l~~~~s~~~~~~~lAil~aGa~~vp 2082 (5163)
T PRK12316       2003 PGVHQRIAEQAARAPEAIAVVFGDQHLSYAELDSRANRLAHRLRARGVGPEVRVAIAAERSFELVVALLAVLKAGGAYVP 2082 (5163)
T ss_pred             CCHHHHHHHHHHhCCCCeEEEcCCCeEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHhhceEEee
Confidence            47899999999999999999987   999 99999999999999999999999999999999999999999999999999


Q ss_pred             ecCCcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCCcceEEecCCCCCCCccCCCccccccccCCcCCCCCCcccc
Q psy8225         123 INTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTEDI  202 (479)
Q Consensus       123 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (479)
                      ++|.++.+++.++++++++++++++.+....+..    ......+.+....           .+...    ....+   .
T Consensus      2083 ld~~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~----~~~~~~~~~~~~~-----------~~~~~----~~~~~---~ 2140 (5163)
T PRK12316       2083 LDPNYPAERLAYMLEDSGAALLLTQRHLLERLPL----PAGVARLPLDRDA-----------EWADY----PDTAP---A 2140 (5163)
T ss_pred             cCCCCCHHHHHHHHHhcCCCEEEeChhhhhhccc----ccccceEeccchh-----------hhhcc----CccCC---C
Confidence            9999999999999999999999998765433211    1111121111100           00000    00000   1


Q ss_pred             cCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcCCCCCCeEEEeccchhhhhhHHHHHHHHhcCceEEecC
Q psy8225         203 KKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRS  282 (479)
Q Consensus       203 ~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G~~~v~~~  282 (479)
                      ....++++++|+|||||||.||||+++|+++.+.+......+++..+|+++...|++|..+. ..++.++..|+++++.+
T Consensus      2141 ~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~-~~~~~~L~~G~~~~~~~ 2219 (5163)
T PRK12316       2141 VQLAGENLAYVIYTSGSTGLPKGVAVSHGALVAHCQAAGERYELSPADCELQFMSFSFDGAH-EQWFHPLLNGARVLIRD 2219 (5163)
T ss_pred             CCCCCCCeEEEEeCccCCCCCCEeEEccHHHHHHHHHHHHhcCCCCcceEEEecCchHHHHH-HHHHHHHhCCCEEEeCC
Confidence            33567899999999999999999999999999999888888899999999999999998764 77889999999998876


Q ss_pred             --CCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEE--ecCCChhhHHHHHHHhCcceeeeeccccc
Q psy8225         283 --KFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFYGATE  358 (479)
Q Consensus       283 --~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~--G~~l~~~~~~~~~~~~~~~~v~~~YG~tE  358 (479)
                        .+++..+++.++++++|++.++|++++.|.+...... ...+||.++  |+++++++.++|.+.++..++++.||+||
T Consensus      2220 ~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~-~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE 2298 (5163)
T PRK12316       2220 DELWDPEQLYDEMERHGVTILDFPPVYLQQLAEHAERDG-RPPAVRVYCFGGEAVPAASLRLAWEALRPVYLFNGYGPTE 2298 (5163)
T ss_pred             cccCCHHHHHHHHHHcCCeEEEcChHHHHHHHhhhhccc-CCcceeEEEEecccCCHHHHHHHHHhCCCcEEEECccchh
Confidence              3689999999999999999999999999887643332 235888876  89999999999998876558999999999


Q ss_pred             cCcccccCCC---CCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCcccccccccC
Q psy8225         359 GNANLMNADG---KVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNGYAD  435 (479)
Q Consensus       359 ~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~gY~~  435 (479)
                      ++..++....   .... +...+++.++++++++|+|++ ++          +|+.|+.|||+++    |+ +++.||+|
T Consensus      2299 ~~~~~~~~~~~~~~~~~-~~~~~iG~p~~~~~~~i~d~~-~~----------~vp~g~~GEl~i~----G~-~v~~GY~~ 2361 (5163)
T PRK12316       2299 AVVTPLLWKCRPQDPCG-AAYVPIGRALGNRRAYILDAD-LN----------LLAPGMAGELYLG----GE-GLARGYLN 2361 (5163)
T ss_pred             heeeeeeeecccccccC-CCcCCcccccCCCEEEEECCC-CC----------CCCCCCeeEEEec----ch-hhcccccC
Confidence            9866543211   1110 011233444448999999854 34          6799999999998    88 99999999


Q ss_pred             cchhHHHHHh-hhccC-CCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         436 KKASEKKILR-NVYSH-GDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       436 ~~~~~~~~~~-~~~~~-~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                      +++.|.+.|. ++|.. +++||+|||+|++++||+|+|+||+||+|
T Consensus      2362 ~p~~T~~~f~~~~~~~~~~~~yrTGDl~~~~~dG~l~~~GR~d~~i 2407 (5163)
T PRK12316       2362 RPGLTAERFVPDPFSASGERLYRTGDLARYRADGVVEYLGRIDHQV 2407 (5163)
T ss_pred             ChhhhhhhccCCCCCCCCCeeEecccEEEEcCCCcEEEecCCCCeE
Confidence            9887776653 33432 56899999999999999999999999985

>PRK07787 acyl-CoA synthetase; Validated

Probab=100.00  E-value=9e-49  Score=393.53  Aligned_cols=356  Identities=20%  Similarity=0.210  Sum_probs=291.6

Q ss_pred             hhcCCCccccEEE---Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCceeeeecCCcchHHH
Q psy8225          57 IREVPMTGAYKYT---VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHIL  132 (479)
Q Consensus        57 ~~~~p~~~a~~~~---~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~l~~~~~~~~l  132 (479)
                      ....++++|+++.   +|| ||.++++++|..|+     ++|+|+++++|+++++++++||+++|++++|+++..+.+++
T Consensus        10 ~~~~~~~~a~~~~~~~~Ty~el~~~~~~~a~~L~-----~~~~V~l~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l   84 (471)
T PRK07787         10 AAAADIADAVRIGGRVLSRSDLAGAATAVAERVA-----GARRVAVLATPTLATVLAVVGALIAGVPVVPVPPDSGVAER   84 (471)
T ss_pred             hcccCCceEEEeCCcEEEHHHHHHHHHHHHHHhc-----cCCEEEEECCCCHHHHHHHHHHHhcCcEEeecCCCCChHHH
Confidence            3456788998886   999 99999999999996     46899999999999999999999999999999999999999


Q ss_pred             HHHHHhccceEEEeChhhHHHHHHhhccCCcceEEecCCCCCCCccCCCccccccccCCcCCCCCCcccccCCCCCCcEE
Q psy8225         133 IHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTEDIKKNKPSDKLA  212 (479)
Q Consensus       133 ~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (479)
                      .++++.+++++++++.+..      ....+.+.+. ..            ...+..             .....++++++
T Consensus        85 ~~~l~~~~~~~il~~~~~~------~~~~~~~~~~-~~------------~~~~~~-------------~~~~~~~~~a~  132 (471)
T PRK07787         85 RHILADSGAQAWLGPAPDD------PAGLPHVPVR-LH------------ARSWHR-------------YPEPDPDAPAL  132 (471)
T ss_pred             HHHHHhcCCCEEEecCCcc------cccccceeee-cc------------cccccc-------------CCCCCCCceEE
Confidence            9999999999999976310      0111111000 00            000000             02235688999


Q ss_pred             EEEccCCCCCcceEEeehHHHHHHhhhhhhhcCCCCCCeEEEeccchhhhhhHHHHHHHHhcCceEEecCCCChhHHHHH
Q psy8225         213 YIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFWKD  292 (479)
Q Consensus       213 i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~  292 (479)
                      ++|||||||.||+|+++|+++...+......+++..++++++.+|++|..|+...++.++..|+++++...+++..+++.
T Consensus       133 i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~  212 (471)
T PRK07787        133 IVYTSGTTGPPKGVVLSRRAIAADLDALAEAWQWTADDVLVHGLPLFHVHGLVLGVLGPLRIGNRFVHTGRPTPEAYAQA  212 (471)
T ss_pred             EEECCCCCCCCCEEEEeHHHHHHHHHHHHHhcCCCccceeEeccCCeeechhHHHHHHHHhcCCEEEecCCCCHHHHHHH
Confidence            99999999999999999999998888777788889999999999999999998889999999999999988999999999


Q ss_pred             HHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEE--ecCCChhhHHHHHHHhCcceeeeeccccccCcccccC---C
Q psy8225         293 CIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFYGATEGNANLMNA---D  367 (479)
Q Consensus       293 i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~--G~~l~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~---~  367 (479)
                      ++ ++++++.++|+++..|.+.... ...++++|.++  |++++++++++|.+.++. ++++.||+||++..+...   .
T Consensus       213 i~-~~~t~~~~~P~~~~~l~~~~~~-~~~l~~l~~~~~gg~~~~~~~~~~~~~~~~~-~~~~~YG~tE~~~~~~~~~~~~  289 (471)
T PRK07787        213 LS-EGGTLYFGVPTVWSRIAADPEA-ARALRGARLLVSGSAALPVPVFDRLAALTGH-RPVERYGMTETLITLSTRADGE  289 (471)
T ss_pred             Hh-hCceEEEcchHHHHHHHhCccc-cccccceeEEEECCCCCCHHHHHHHHHHcCC-CeecccCccccCcceecCCCCc
Confidence            99 9999999999999998875432 23567888877  788999999999999998 899999999998654432   2


Q ss_pred             CCCCcccccCccccCCCceeeEEeCCCCCCccccCCCcccccc-CC-CCceEEEEeecCCcccccccccCcchhHHHHHh
Q psy8225         368 GKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCK-AE-EPGILIGMIKESRAESHFNGYADKKASEKKILR  445 (479)
Q Consensus       368 ~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~-~~-~~Gel~v~~~~~~~~~~~~gY~~~~~~~~~~~~  445 (479)
                      ..++++|+|++      +++++++|++ +.          +++ .| ..|||+++    |+ +++.||+++++.+++.+.
T Consensus       290 ~~~~~vG~~~~------g~~~~i~d~~-~~----------~~~~~~~~~Gei~v~----g~-~~~~gy~~~~~~t~~~~~  347 (471)
T PRK07787        290 RRPGWVGLPLA------GVETRLVDED-GG----------PVPHDGETVGELQVR----GP-TLFDGYLNRPDATAAAFT  347 (471)
T ss_pred             ccCCcccccCC------CcEEEEECCC-CC----------CCCCCCCCceEEEEE----Cc-ccchhhcCChhhchhccc
Confidence            34567777665      7899999866 44          233 23 37999998    77 899999999887776553


Q ss_pred             hhccCCCcEEEcCCeeEEecCCcEEEecCC-CCCC
Q psy8225         446 NVYSHGDAAFNTGDILIKDKFQYFYFKDRT-GDAC  479 (479)
Q Consensus       446 ~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~-~d~~  479 (479)
                           .+|||+|||+|++|+||+++++||+ ||++
T Consensus       348 -----~~~~~~TGDlg~~~~dg~l~~~GR~~d~~i  377 (471)
T PRK07787        348 -----ADGWFRTGDVAVVDPDGMHRIVGRESTDLI  377 (471)
T ss_pred             -----CCCceecCceEEEcCCCCEEEeCCCCceeE
Confidence                 3789999999999999999999996 7764

>PRK13390 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.6e-48  Score=395.15  Aligned_cols=381  Identities=21%  Similarity=0.245  Sum_probs=291.5

Q ss_pred             HHhhcCCCccccEEE-----Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCceeeeecCCcc
Q psy8225          55 RTIREVPMTGAYKYT-----VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQR  128 (479)
Q Consensus        55 ~~~~~~p~~~a~~~~-----~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~l~~~~~  128 (479)
                      .++..+|+++|+.+.     +|| ||.++++++|+.|.++|+++||+|+++++|++++++++|||+++|++++|+++.++
T Consensus         5 ~~a~~~p~~~a~~~~~~~~~lTy~el~~~~~~la~~L~~~gv~~gd~V~i~~~n~~~~~~~~la~~~~Ga~~~~l~~~~~   84 (501)
T PRK13390          5 THAQIAPDRPAVIVAETGEQVSYRQLDDDSAALARVLYDAGLRTGDVVALLSDNSPEALVVLWAALRSGLYITAINHHLT   84 (501)
T ss_pred             hhhhhCCCCcEEEecCCCeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEeccccCCC
Confidence            466789999999862     999 99999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHhccceEEEeChhhHHHHHHhhccCCcceEEecCCCCCCCccCCCccccccccCCcCCCCCCcccccCCCCC
Q psy8225         129 QHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTEDIKKNKPS  208 (479)
Q Consensus       129 ~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (479)
                      .+++.++++.+++++++++.............. ...+. .....       .....+++......   +    ......
T Consensus        85 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~-~~~~~-------~~~~~~~~~~~~~~---~----~~~~~~  148 (501)
T PRK13390         85 APEADYIVGDSGARVLVASAALDGLAAKVGADL-PLRLS-FGGEI-------DGFGSFEAALAGAG---P----RLTEQP  148 (501)
T ss_pred             HHHHHHHHHhcCCcEEEEcchhhhHHHHhhhcc-ceEEE-ecCcc-------cccccHHHHhcccC---C----CCCCCc
Confidence            999999999999999999875443322221111 11111 11100       01111222111100   0    011223


Q ss_pred             CcEEEEEccCCCCCcceEEe--ehHHHHHHh----hhhhhhcCCCCCCeEEEeccchhhhhhHHHHHHHHhcCceEEecC
Q psy8225         209 DKLAYIYTSGTTGLPKAAVM--THVRAMFMA----ISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRS  282 (479)
Q Consensus       209 ~~~~i~~TSGTTG~pK~v~~--s~~~l~~~~----~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G~~~v~~~  282 (479)
                      +.++|+|||||||.||+|++  +|.++....    ......+.+..++++++.+|++|.+++.... ..+..|+++++.+
T Consensus       149 ~~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~~~~~~-~~~~~g~~~~~~~  227 (501)
T PRK13390        149 CGAVMLYSSGTTGFPKGIQPDLPGRDVDAPGDPIVAIARAFYDISESDIYYSSAPIYHAAPLRWCS-MVHALGGTVVLAK  227 (501)
T ss_pred             ccEEEEeCCCCCCCCCEEEeeccccccccchhhhHhhHHHHhCCCCCCeEEecccchhhhHHHHHH-HHHhcCceEEEcC
Confidence            46999999999999999996  455544321    1122346778899999999999998875443 3566799999988


Q ss_pred             CCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCC--CCCCCCceeEEE--ecCCChhhHHHHHHHhCcceeeeeccccc
Q psy8225         283 KFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEK--PEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFYGATE  358 (479)
Q Consensus       283 ~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~--~~~~l~~lr~~~--G~~l~~~~~~~~~~~~~~~~v~~~YG~tE  358 (479)
                      .+++..+++.|+++++|++.++|+++..|.+....  ....++++|.++  |+++++++.+.+++.++. .+++.||+||
T Consensus       228 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~-~~~~~YG~tE  306 (501)
T PRK13390        228 RFDAQATLGHVERYRITVTQMVPTMFVRLLKLDADVRTRYDVSSLRAVIHAAAPCPVDVKHAMIDWLGP-IVYEYYSSTE  306 (501)
T ss_pred             CcCHHHHHHHHHHcCCeEEEecHHHHHHHHhccchhcccCChhhhheEEEcCCCCCHHHHHHHHHhcCC-ceeeeecccc
Confidence            89999999999999999999999999988865432  233567888876  788999999999999998 8999999999


Q ss_pred             cCcccccC----CCCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCccccccccc
Q psy8225         359 GNANLMNA----DGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNGYA  434 (479)
Q Consensus       359 ~~~~~~~~----~~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~gY~  434 (479)
                      +++++...    ...++++|+|.+      + .+.++|+ +++          ++++|+.|||+++    ++ +++.||+
T Consensus       307 ~~~~~~~~~~~~~~~~~~~G~~~~------g-~~~i~d~-~~~----------~~~~g~~Gel~v~----~~-~~~~gy~  363 (501)
T PRK13390        307 AHGMTFIDSPDWLAHPGSVGRSVL------G-DLHICDD-DGN----------ELPAGRIGTVYFE----RD-RLPFRYL  363 (501)
T ss_pred             cCceEEecchhhccCCCCcCCccc------c-eEEEECC-CCC----------CCCCCCceEEEEe----cC-Ccccccc
Confidence            97654321    234567777654      5 5777884 344          5689999999998    77 8999999


Q ss_pred             CcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         435 DKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       435 ~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                      ++++.+.+.+..   .+++|++|||+|++|+||++++.||.||++
T Consensus       364 ~~~~~t~~~~~~---~~~~w~~tGDl~~~~~dg~l~~~gR~~~~i  405 (501)
T PRK13390        364 NDPEKTAAAQHP---AHPFWTTVGDLGSVDEDGYLYLADRKSFMI  405 (501)
T ss_pred             CChhhhHHhhcc---CCCceEEcCceEEECCCCeEEEeeccccce
Confidence            998877765431   236899999999999999999999999975

>PRK07798 acyl-CoA synthetase; Validated

Probab=100.00  E-value=5.3e-48  Score=394.81  Aligned_cols=402  Identities=21%  Similarity=0.267  Sum_probs=303.3

Q ss_pred             hhHHHHHHHhhcCCCccccEEE---Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCceeeee
Q psy8225          48 YARPLFVRTIREVPMTGAYKYT---VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFI  123 (479)
Q Consensus        48 ~l~~~l~~~~~~~p~~~a~~~~---~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~l  123 (479)
                      ++.++|.+.++++|+++|+.+.   +|| ||.++++++|+.|.+.|+++||+|+++++|++++++++|||+++|++++|+
T Consensus         4 ~l~~~~~~~a~~~p~~~a~~~~~~~~ty~el~~~~~~la~~L~~~g~~~~~~v~v~~~n~~~~~~~~~a~~~~G~~~v~l   83 (533)
T PRK07798          4 NIADLFEAVADAVPDRVALVCGDRRLTYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGAFKARAVPVNV   83 (533)
T ss_pred             cHHHHHHHHHHhCCCceEEEECCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCeEEEec
Confidence            5889999999999999999987   999 999999999999999999999999999999999999999999999999999


Q ss_pred             cCCcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCCcce-EEecCCCCCCCccCCCccccccccCCcCCCCCCcccc
Q psy8225         124 NTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGIS-LYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTEDI  202 (479)
Q Consensus       124 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (479)
                      ++.++.+++.++++.+++++++++......+.++....+..+ ++.++.....  ........+++++........    
T Consensus        84 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~----  157 (533)
T PRK07798         84 NYRYVEDELRYLLDDSDAVALVYEREFAPRVAEVLPRLPKLRTLVVVEDGSGN--DLLPGAVDYEDALAAGSPERD----  157 (533)
T ss_pred             CcCCCHHHHHHHHhhcCCCEEEEchhhHHHHHHHhccCCCccEEEEecCCccc--ccCCccccHHHHHhccCCcCC----
Confidence            999999999999999999999999877776666655444443 3333322110  000112234444433221111    


Q ss_pred             cCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhh---------cCC------CCCCeEEEeccchhhhhhHHH
Q psy8225         203 KKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQ---------TGL------TSDDVVYTTLPLYHTAGGLLG  267 (479)
Q Consensus       203 ~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~---------~~~------~~~d~~~~~~pl~h~~g~~~~  267 (479)
                      ......+.++++|||||||.||+|+++|+++..........         ..+      ..+++++..+|++|.++++ .
T Consensus       158 ~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~-~  236 (533)
T PRK07798        158 FGERSPDDLYLLYTGGTTGMPKGVMWRQEDIFRVLLGGRDFATGEPIEDEEELAKRAAAGPGMRRFPAPPLMHGAGQW-A  236 (533)
T ss_pred             CCCCCCCceEEEECCCCCCCCcEEEEecHHHHHHHhhhhhhhcccchhhhhhhcccccCCCCceEEEecchhhhhhHH-H
Confidence            11123345789999999999999999999987654332211         111      5678899999999999974 6


Q ss_pred             HHHHHhcCceEEecC--CCChhHHHHHHHHhcccEEEEehHHHH-HHhcCCC-CCCCCCCceeEEE--ecCCChhhHHHH
Q psy8225         268 IGQCLLGGSTVVIRS--KFSASNFWKDCIKYNCTVAQYIGEMCR-YLLAVPE-KPEDTQHSVKMMI--GNGLRPQVWEPF  341 (479)
Q Consensus       268 ~~~~l~~G~~~v~~~--~~~~~~~~~~i~~~~~t~~~~~p~~l~-~l~~~~~-~~~~~l~~lr~~~--G~~l~~~~~~~~  341 (479)
                      ++.++..|+++++.+  .+++..+++.++++++|.+..+|..+. .+.+... .....++++|.++  |+++++++.+++
T Consensus       237 ~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~i~~gG~~~~~~~~~~~  316 (533)
T PRK07798        237 AFAALFSGQTVVLLPDVRFDADEVWRTIEREKVNVITIVGDAMARPLLDALEARGPYDLSSLFAIASGGALFSPSVKEAL  316 (533)
T ss_pred             HHHHHhcCceEEEecCCCcCHHHHHHHHHHhCCeEEEechHHHHHHHHHHhcccccCCCCceEEEEECCCCCCHHHHHHH
Confidence            778999999999998  789999999999999999999986553 3333322 2234577899877  888999999999


Q ss_pred             HHHhCcceeeeeccccccCcccccC-CCCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCC--ceEE
Q psy8225         342 QKRFGLDRICEFYGATEGNANLMNA-DGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEP--GILI  418 (479)
Q Consensus       342 ~~~~~~~~v~~~YG~tE~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~--Gel~  418 (479)
                      .+.++...+++.||+||++...... .......|..    .+.++..+.++|++ ++          ++++|+.  |+++
T Consensus       317 ~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~g~~----~~~~~~~~~i~~~~-~~----------~~~~g~~~~g~l~  381 (533)
T PRK07798        317 LELLPNVVLTDSIGSSETGFGGSGTVAKGAVHTGGP----RFTIGPRTVVLDED-GN----------PVEPGSGEIGWIA  381 (533)
T ss_pred             HHHcCCCeEEeeecccccccccccCCCCCCccCCCC----ccCCCceEEEECCC-CC----------CCCCCCCCeeEEE
Confidence            9998434899999999997554432 1122223310    12225777777754 33          4566766  7665


Q ss_pred             EEeecCCcccccccccCcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         419 GMIKESRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       419 v~~~~~~~~~~~~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                      .     ++ .++.||++++..+++.|..  .++++||+|||+|++|+||+++++||.||++
T Consensus       382 ~-----~~-~~~~gy~~~~~~t~~~f~~--~~~~~~~~TGD~~~~~~~g~l~~~GR~~~~i  434 (533)
T PRK07798        382 R-----RG-HIPLGYYKDPEKTAETFPT--IDGVRYAIPGDRARVEADGTITLLGRGSVCI  434 (533)
T ss_pred             e-----ec-CccccccCChhhhHHhhcc--CCCCceEEcCcEEEEcCCCcEEEEccccceE
Confidence            3     55 6889999998877765532  2346799999999999999999999999974

>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

Probab=100.00  E-value=2.8e-48  Score=393.98  Aligned_cols=382  Identities=20%  Similarity=0.234  Sum_probs=306.1

Q ss_pred             hhHHHHHHHhhcCCCccccEEE---Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCceeeee
Q psy8225          48 YARPLFVRTIREVPMTGAYKYT---VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFI  123 (479)
Q Consensus        48 ~l~~~l~~~~~~~p~~~a~~~~---~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~l  123 (479)
                      .+.++|++++..+|+++++...   +|| ||.++++++|..|.+.|+.+|++|+++++|+.+++++++||+++|++++|+
T Consensus         3 ~~~~~l~~~a~~~p~~~~~~~~~~~~t~~~l~~~~~~~a~~l~~~g~~~~~~v~~~~~~~~~~~~~~~a~~~~G~~~~~~   82 (503)
T PRK04813          3 DIIETIEEFAQTQPDFPAYDYLGEKLTYGQLKEDSDALAAFIDSLKLPDKSPIIVFGHMSPEMLATFLGAVKAGHAYIPV   82 (503)
T ss_pred             hHHHHHHHHHHhCCCceEEEeCCcEEeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEecC
Confidence            3679999999999999999876   999 999999999999999999999999999999999999999999999999999


Q ss_pred             cCCcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCCcceEEecCCCCCCCccCCCccccccccCCcCCCCCCccccc
Q psy8225         124 NTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTEDIK  203 (479)
Q Consensus       124 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (479)
                      ++.++.+++.++++..++++++++.....       ....+..+...              .+.+.......   .....
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~--------------~~~~~~~~~~~---~~~~~  138 (503)
T PRK04813         83 DVSSPAERIEMIIEVAKPSLIIATEELPL-------EILGIPVITLD--------------ELKDIFATGNP---YDFDH  138 (503)
T ss_pred             CCCChHHHHHHHHHhcCCCEEEecccccc-------cccCCcEEehH--------------Hhhhhhhcccc---ccccc
Confidence            99999999999999999999999865410       00011111110              01111100000   00012


Q ss_pred             CCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcCCCCCCeEEEeccchhhhhhHHHHHHHHhcCceEEecCC
Q psy8225         204 KNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSK  283 (479)
Q Consensus       204 ~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~  283 (479)
                      ...++++++++|||||||.||+|.++|+++...+......+.+..++++++..|++|..+. ..++.++..|+++++.+.
T Consensus       139 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~~~l~~g~~~v~~~~  217 (503)
T PRK04813        139 AVKGDDNYYIIFTSGTTGKPKGVQISHDNLVSFTNWMLEDFALPEGPQFLNQAPYSFDLSV-MDLYPTLASGGTLVALPK  217 (503)
T ss_pred             cCCCCCcEEEEECCCCCCCCcEEEeehHHHHHHHHHHHHHcCCCcCceeeecCCcchhHhH-HHHHHHHhcCCEEEEcCh
Confidence            3456789999999999999999999999999888877777888999999999999999886 566788999999998774


Q ss_pred             ---CChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEE--ecCCChhhHHHHHHHhCcceeeeeccccc
Q psy8225         284 ---FSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFYGATE  358 (479)
Q Consensus       284 ---~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~--G~~l~~~~~~~~~~~~~~~~v~~~YG~tE  358 (479)
                         .++..+++.+.+++++++..+|++++.+..........++++|.++  |+++++++.+++.+.++...+++.||+||
T Consensus       218 ~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE  297 (503)
T PRK04813        218 DMTANFKQLFETLPQLPINVWVSTPSFADMCLLDPSFNEEHLPNLTHFLFCGEELPHKTAKKLLERFPSATIYNTYGPTE  297 (503)
T ss_pred             hhhcCHHHHHHHHHHcCCeEEEeChHHHHHHHHhhccCcccCCCceEEEEecCcCCHHHHHHHHHHCCCceEEeCcccch
Confidence               4788999999999999999999999887665444445678888876  89999999999999995448999999999


Q ss_pred             cCcccccCC--------CCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCccccc
Q psy8225         359 GNANLMNAD--------GKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHF  430 (479)
Q Consensus       359 ~~~~~~~~~--------~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~~  430 (479)
                      ++..+....        ....++|++.+      +++++++|++ +.          +++.|+.|||+++    |+ .++
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~------~~~~~i~d~~-~~----------~~~~g~~Gel~v~----~~-~~~  355 (503)
T PRK04813        298 ATVAVTSIEITDEMLDQYKRLPIGYAKP------DSPLLIIDEE-GT----------KLPDGEQGEIVIS----GP-SVS  355 (503)
T ss_pred             heeEEEEEEecccccccCCCCcccccCC------CCEEEEECCC-CC----------CCCCCCceEEEEe----cc-ccc
Confidence            976543211        22334555544      7888888844 44          5678899999998    77 899


Q ss_pred             ccccCcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         431 NGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       431 ~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                      .||+++++.+...|.+  .++.+||+|||+|++ ++|++++.||.||++
T Consensus       356 ~gy~~~~~~~~~~~~~--~~g~~~~~tGD~~~~-~~g~~~~~GR~~d~i  401 (503)
T PRK04813        356 KGYLNNPEKTAEAFFT--FDGQPAYHTGDAGYL-EDGLLFYQGRIDFQI  401 (503)
T ss_pred             cccCCChhHhHHhhcc--CCCceeEECCceEEe-eCCeEEEeccccceE
Confidence            9999998777655421  134579999999999 999999999999974

>PRK05691 peptide synthase; Validated

Probab=100.00  E-value=1e-48  Score=471.42  Aligned_cols=394  Identities=18%  Similarity=0.184  Sum_probs=319.2

Q ss_pred             chhHHHHHHHhhcCCCccccEEE---Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCceeee
Q psy8225          47 TYARPLFVRTIREVPMTGAYKYT---VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAF  122 (479)
Q Consensus        47 ~~l~~~l~~~~~~~p~~~a~~~~---~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~  122 (479)
                      .++.++|.+++.++|+++|+++.   +|| ||.++++++|+.|.++|+++|++|+|++++++++++++||++++|+.++|
T Consensus      3720 ~~~~~~~~~~~~~~p~~~Av~~~~~~~tY~eL~~~~~~la~~L~~~gv~~~~~V~v~~~~s~~~~v~~lavlkaG~a~vp 3799 (4334)
T PRK05691       3720 QSYVRLFEAQVAAHPQRIAASCLDQQWSYAELNRAANRLGHALRAAGVGVDQPVALLAERGLDLLGMIVGSFKAGAGYLP 3799 (4334)
T ss_pred             cCHHHHHHHHHHhCCCceEEEcCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHhhCcEEeC
Confidence            47889999999999999999998   999 99999999999999999999999999999999999999999999999999


Q ss_pred             ecCCcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCCc---ceEEecCCCCCCCccCCCccccccccCCcCCCCCCc
Q psy8225         123 INTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPG---ISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPT  199 (479)
Q Consensus       123 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (479)
                      |+|.++.+++.++++++++++++++................   ..+++.                 ++...........
T Consensus      3800 ld~~~p~~r~~~il~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~ 3862 (4334)
T PRK05691       3800 LDPGLPAQRLQRIIELSRTPVLVCSAACREQARALLDELGCANRPRLLVW-----------------EEVQAGEVASHNP 3862 (4334)
T ss_pred             CCCCChHHHHHHHHHhcCCCEEEecCcccchhhhhhcccccccccceeee-----------------cccccccccccCC
Confidence            99999999999999999999999987655443333222210   011111                 1110000000010


Q ss_pred             ccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcCCCCCCeEEEeccchhhhhhHHHHHHHHhcCceEE
Q psy8225         200 EDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVV  279 (479)
Q Consensus       200 ~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G~~~v  279 (479)
                        .....+++.++|+|||||||.||||+++|+++.+.+......++++.+|+++...++++..+. +.++.++..|++++
T Consensus      3863 --~~~~~~~~~ayvi~TSGSTG~PKGV~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~s~~fd~s~-~~~~~~l~~G~~l~ 3939 (4334)
T PRK05691       3863 --GIYSGPDNLAYVIYTSGSTGLPKGVMVEQRGMLNNQLSKVPYLALSEADVIAQTASQSFDISV-WQFLAAPLFGARVE 3939 (4334)
T ss_pred             --CCCCCCCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHHhcCCCccceEEEecCCchhHHH-HHHHHHHhCCCEEE
Confidence              123467899999999999999999999999999999888888999999999999999998875 77888999999999


Q ss_pred             ecCC---CChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEE--ecCCChhhHHHHHHHhCcceeeeec
Q psy8225         280 IRSK---FSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFY  354 (479)
Q Consensus       280 ~~~~---~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~--G~~l~~~~~~~~~~~~~~~~v~~~Y  354 (479)
                      +.+.   .++..+++.++++++|++..+|++++.++....   ..+++||.++  ||++++++.++|.+.++..++++.|
T Consensus      3940 i~~~~~~~~~~~l~~~~~~~~vt~~~~~Ps~~~~l~~~~~---~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~Y 4016 (4334)
T PRK05691       3940 IVPNAIAHDPQGLLAHVQAQGITVLESVPSLIQGMLAEDR---QALDGLRWMLPTGEAMPPELARQWLQRYPQIGLVNAY 4016 (4334)
T ss_pred             EcCccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhcc---ccCCCceEEEecCCcCCHHHHHHHHHhCCCCeEEeCc
Confidence            8763   578899999999999999999999998875432   2467899876  8999999999999887655999999


Q ss_pred             cccccCcccccCCC-CCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCcccccccc
Q psy8225         355 GATEGNANLMNADG-KVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNGY  433 (479)
Q Consensus       355 G~tE~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~gY  433 (479)
                      |+||++..++.... .....+.++|++.|+.++++.++|.. ++          +|+.|..|||+++    |+ +++.||
T Consensus      4017 G~TE~t~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d~~-~~----------~~p~g~~GEL~i~----G~-~v~~GY 4080 (4334)
T PRK05691       4017 GPAECSDDVAFFRVDLASTRGSYLPIGSPTDNNRLYLLDEA-LE----------LVPLGAVGELCVA----GT-GVGRGY 4080 (4334)
T ss_pred             cCccceeEEEEEEcccccccCCcCCCCCccCCCEEEEECCC-CC----------CCCCCCceEEEEe----cc-cccccc
Confidence            99999876542211 11112233455566668999999844 43          6799999999998    88 999999


Q ss_pred             cCcchhHHHHH-hhhcc-CCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         434 ADKKASEKKIL-RNVYS-HGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       434 ~~~~~~~~~~~-~~~~~-~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                      +|+++.|++.| .++|. ++++||||||+|++++||.|+|+||+||+|
T Consensus      4081 ~~~~~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~l~~~GR~d~qv 4128 (4334)
T PRK05691       4081 VGDPLRTALAFVPHPFGAPGERLYRTGDLARRRSDGVLEYVGRIDHQV 4128 (4334)
T ss_pred             cCCcccchhhcccCCCCCCCceeeccCcceeecCCCcEEEecccCCcE
Confidence            99987776544 55553 357899999999999999999999999986

>TIGR01733 AA-adenyl-dom amino acid adenylation domain

Probab=100.00  E-value=2.1e-48  Score=384.26  Aligned_cols=363  Identities=23%  Similarity=0.274  Sum_probs=291.2

Q ss_pred             eh-hhHHHHHHHHHHHHH-cCCCCCCEEEEEcCCchHHHHHHHHhhhcCceeeeecCCcchHHHHHHHHhccceEEEeCh
Q psy8225          71 TF-QVEDHSNRIANFFKS-KGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVAECKAIIYGA  148 (479)
Q Consensus        71 Ty-~l~~~~~~la~~L~~-~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~  148 (479)
                      || ||.+.++++|+.|.+ .|+++||+|+++++|+++++++++||+++|++++|+++..+.+++.++++.+++++++++.
T Consensus         1 t~~~l~~~~~~~a~~l~~~~g~~~gd~v~l~~~n~~~~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~ii~~~   80 (408)
T TIGR01733         1 TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYPAERLAFILEDAGARLLLTDS   80 (408)
T ss_pred             CHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHhcCCCEEEEcC
Confidence            79 999999999999998 8999999999999999999999999999999999999999999999999999999999988


Q ss_pred             hhHHHHHHhhccCCcceEEecCCCCCCCccCCCccccccccCCcCCCCCCcccccCCCCCCcEEEEEccCCCCCcceEEe
Q psy8225         149 ELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVM  228 (479)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~  228 (479)
                      .....+.....     ........             +..............  .....+++++++|||||||.||+|.+
T Consensus        81 ~~~~~~~~~~~-----~~~~~~~~-------------~~~~~~~~~~~~~~~--~~~~~~~~~~i~~TSGTtG~pK~v~~  140 (408)
T TIGR01733        81 ALASRLAGLVL-----PIILVDPL-------------ELAALDDAPAPPPPD--APSGPDDLAYVIYTSGSTGRPKGVVV  140 (408)
T ss_pred             chhhhccccCC-----ceEEechh-------------hhhhccccccccccc--CCCCCCCcEEEEEcCCCCCCCCEEEe
Confidence            75544432211     11111100             000000000000000  11356889999999999999999999


Q ss_pred             ehHHHHHHhhhhhhhcCCCCCCeEEEeccchhhhhhHHHHHHHHhcCceEEecCCCC---hhHHHHHHHHhcccEEEEeh
Q psy8225         229 THVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFS---ASNFWKDCIKYNCTVAQYIG  305 (479)
Q Consensus       229 s~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~---~~~~~~~i~~~~~t~~~~~p  305 (479)
                      ||+++...+......+.+..++++++..|++|.+++ ..++.++..|+++++.+...   +..+.+.++++++|.+.++|
T Consensus       141 s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~~p  219 (408)
T TIGR01733       141 THRSLVNLLAWLARRYGLDPDDRVLQFASLSFDASV-EEIFGTLLAGATLVVPPEDEERDAALLAALIAEHPVTVLNLTP  219 (408)
T ss_pred             ccHHHHHHHHHHHHhcCCCCCceEEEecCCccchhH-HHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHcCceEEEeCH
Confidence            999999988888888888999999999999999886 66788999999999887543   57889999999999999999


Q ss_pred             HHHHHHhcCCCCCCCCCCceeEEE--ecCCChhhHHHHHHHhCcceeeeeccccccCcccccC----CC----CCCcccc
Q psy8225         306 EMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFYGATEGNANLMNA----DG----KVGAVGY  375 (479)
Q Consensus       306 ~~l~~l~~~~~~~~~~l~~lr~~~--G~~l~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~----~~----~~~~~g~  375 (479)
                      .+++.|.+...   ..++++|.++  |+++++++++++.+.++...+++.||+||++.++...    ..    ++.++|.
T Consensus       220 ~~~~~l~~~~~---~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~~~~~~~~~~G~  296 (408)
T TIGR01733       220 SLLALLAAALP---PALASLRLVILGGEALTPALVDRWRARGPGARLINLYGPTETTVWSTATLVDADDAPRESPVPIGR  296 (408)
T ss_pred             HHHHHHHHhhh---hcccCceEEEEeCccCCHHHHHHHHHhCCCcEEEecccCCceEEEEEEEEcCccccCCccccccCc
Confidence            99999988754   4578899887  8999999999999999833999999999998766321    11    1455666


Q ss_pred             cCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCcccccccccCcchhHHHHHh-hhccCCCc-
Q psy8225         376 IPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNGYADKKASEKKILR-NVYSHGDA-  453 (479)
Q Consensus       376 ~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~gY~~~~~~~~~~~~-~~~~~~~g-  453 (479)
                      |.+      +++++|+|++ ++          ++++|+.|||+++    ++ +++.||+++++.+++.+. ..+...+| 
T Consensus       297 ~~~------~~~~~i~~~~-~~----------~~~~g~~Gel~v~----~~-~~~~gy~~~~~~~~~~~~~~~~~~~~~~  354 (408)
T TIGR01733       297 PLA------NTRLYVLDDD-LR----------PVPVGVVGELYIG----GP-GVARGYLNRPELTAERFVPDPFAGGDGA  354 (408)
T ss_pred             ccC------CceEEEECCC-CC----------CCCCCCceEEEec----Cc-cccccccCChhhhhcceeeCCCCCCCCc
Confidence            554      7999999976 55          5688999999998    77 899999998776665443 22333334 


Q ss_pred             -EEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         454 -AFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       454 -~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                       ||+|||+|++|+||++++.||.||++
T Consensus       355 ~~~~TGDl~~~d~~g~~~~~gR~~~~i  381 (408)
T TIGR01733       355 RLYRTGDLVRYLPDGNLEFLGRIDDQV  381 (408)
T ss_pred             eEEECCceEEEcCCCCEEEeeccCCEE
Confidence             99999999999999999999999974

This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group.

>PRK09192 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.8e-48  Score=400.93  Aligned_cols=384  Identities=17%  Similarity=0.128  Sum_probs=295.2

Q ss_pred             chhHHHHHHHhhcCCCccccEE-----E-Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCce
Q psy8225          47 TYARPLFVRTIREVPMTGAYKY-----T-VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVV  119 (479)
Q Consensus        47 ~~l~~~l~~~~~~~p~~~a~~~-----~-~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~  119 (479)
                      .++.++|+..++.+|+..++..     . +|| ||.+++.++|.+|+++|+++||+|+++++|+++++++++||+++|++
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~gi~~gd~V~l~~~n~~~~~~~~lA~~~~G~~  100 (579)
T PRK09192         21 PTLVEALDYAALGEAGMNFYDRRGQLEEALPYQTLRARAEAGARRLLALGLKPGDRVALIAETDGDFVEAFFACQYAGLV  100 (579)
T ss_pred             hhHHHHHHHhhccCCceEEEecCCCEEEEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCchhHHHHHHHHHHcCCe
Confidence            4689999999999887766553     2 999 99999999999999999999999999999999999999999999999


Q ss_pred             eeeecCCcc-------hHHHHHHHHhccceEEEeChhhHHHHHHhhccCCcceEEecCCCCCCCccCCCccccccccCCc
Q psy8225         120 AAFINTNQR-------QHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPE  192 (479)
Q Consensus       120 ~v~l~~~~~-------~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (479)
                      ++|+++...       .+++.++++.++++++|++....+.+.+.....+...+.                 .+.++...
T Consensus       101 ~v~i~~~~~~~~~~~~~~~l~~~i~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~  163 (579)
T PRK09192        101 PVPLPLPMGFGGRESYIAQLRGMLASAQPAAIITPDELLPWVNEATHGNPLLHVL-----------------SHAWFKAL  163 (579)
T ss_pred             eEeccCCcccccchHHHHHHHHHHHhcCCCEEEeChHHHHHHHHhhcccccccee-----------------ehhhhccc
Confidence            999976443       589999999999999999987766655543222111111                 11111111


Q ss_pred             CCCCCCcccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhh-hcCCCCCCeEEEeccchhhhhhHHHHHHH
Q psy8225         193 VSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRY-QTGLTSDDVVYTTLPLYHTAGGLLGIGQC  271 (479)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~-~~~~~~~d~~~~~~pl~h~~g~~~~~~~~  271 (479)
                      ......   ......+++++++|||||||.||+|+++|++++..+..... .+++..+|++++.+|++|.+|+...++.+
T Consensus       164 ~~~~~~---~~~~~~~~~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~  240 (579)
T PRK09192        164 PEADVA---LPRPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAISHDGLKVRPGDRCVSWLPFYHDMGLVGFLLTP  240 (579)
T ss_pred             CCCccc---cCCCCCCCeEEEEecCCCCCCCceEEeeHHHHHHHHHHHHhhcccCCCCCeEEEeCCCCCcchhHHHHHHH
Confidence            111000   02345688999999999999999999999999988777666 77889999999999999999987777788


Q ss_pred             HhcCceEEecCC----CChhHHHHHHHHhcccEEEEehHHHHHHhcCCC---CCCCCCCceeEEE--ecCCChhhHHHHH
Q psy8225         272 LLGGSTVVIRSK----FSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPE---KPEDTQHSVKMMI--GNGLRPQVWEPFQ  342 (479)
Q Consensus       272 l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~---~~~~~l~~lr~~~--G~~l~~~~~~~~~  342 (479)
                      +..|+++++.+.    .++..+++.+.+++++++...|..+..+.....   ....+++++|.+.  |+++++++.+.+.
T Consensus       241 l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~l~~~~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~  320 (579)
T PRK09192        241 VATQLSVDYLPTRDFARRPLQWLDLISRNRGTISYSPPFGYELCARRVNSKDLAELDLSCWRVAGIGADMIRPDVLHQFA  320 (579)
T ss_pred             HHhCCeeEeeCHHHHHHCHHHHHHHHHhcCcEEEeCCcHHHHHHHHhhccccccccchhhhheeEecCccCCHHHHHHHH
Confidence            889999877652    268899999999999977765555544443221   1224577888876  8899999999999


Q ss_pred             HHhCc-----ceeeeeccccccCcccccCCCC-------------------------------CCcccccCccccCCCce
Q psy8225         343 KRFGL-----DRICEFYGATEGNANLMNADGK-------------------------------VGAVGYIPYIAIPFYPV  386 (479)
Q Consensus       343 ~~~~~-----~~v~~~YG~tE~~~~~~~~~~~-------------------------------~~~~g~~~~~~~~~~~~  386 (479)
                      +.++.     ..+++.||+||++..+...+..                               .+++|+++      +++
T Consensus       321 ~~~~~~g~~~~~~~~~yG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~------p~~  394 (579)
T PRK09192        321 EAFAPAGFDDKAFMPSYGLAEATLAVSFSPLGSGIVVEEVDRDRLEYQGKAVAPGAETRRVRTFVNCGKAL------PGH  394 (579)
T ss_pred             HHHHhcCCChhhcccccccccceeEEeccCCCCCceEEEEcHHHhcCCceeeccCCCCccceeEeecCCcC------CCc
Confidence            88742     2589999999987554321111                               12345544      478


Q ss_pred             eeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCcccccccccCcchhHHHHHhhhccCCCcEEEcCCeeEEecC
Q psy8225         387 GLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKF  466 (479)
Q Consensus       387 ~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~d  466 (479)
                      +++++|++ +.          +++.|+.|||+++    |+ .++.||++++++.+. +.     .+|||+|||+|++ ++
T Consensus       395 ~v~i~d~~-~~----------~~~~g~~Gel~i~----g~-~~~~gY~~~~~~~~~-~~-----~dgw~~TGDlg~~-~~  451 (579)
T PRK09192        395 EIEIRNEA-GM----------PLPERVVGHICVR----GP-SLMSGYFRDEESQDV-LA-----ADGWLDTGDLGYL-LD  451 (579)
T ss_pred             EEEEECCC-CC----------CCCCCCEEEEEec----CC-chhhhhcCCcccccc-cc-----CCceeeccceeeE-EC
Confidence            99988854 44          5678899999998    77 899999998544333 22     3789999999999 99


Q ss_pred             CcEEEecCCCCCC
Q psy8225         467 QYFYFKDRTGDAC  479 (479)
Q Consensus       467 G~l~~~GR~~d~~  479 (479)
                      |+++++||+||++
T Consensus       452 G~l~~~GR~dd~i  464 (579)
T PRK09192        452 GYLYITGRAKDLI  464 (579)
T ss_pred             CEEEEEeccccEE
Confidence            9999999999985

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=100.00  E-value=2.8e-48  Score=429.12  Aligned_cols=392  Identities=18%  Similarity=0.231  Sum_probs=303.5

Q ss_pred             cchhHHHHHHHhhcCC-CccccEEE----Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCce
Q psy8225          46 PTYARPLFVRTIREVP-MTGAYKYT----VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVV  119 (479)
Q Consensus        46 ~~~l~~~l~~~~~~~p-~~~a~~~~----~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~  119 (479)
                      +.++.+.+.+.++++| ++.|+.+.    +|| ||.++++++|+.|++ |+++||+|+++++|+++++++++||+++|++
T Consensus       630 ~~~~~~~l~~~~~~~~~~~~ai~~~~~~~~Ty~el~~~~~~lA~~L~~-g~~~gd~V~i~~~n~~~~~~~~la~~~~G~v  708 (1140)
T PRK06814        630 DRTLFEALIEAAKIHGFKKLAVEDPVNGPLTYRKLLTGAFVLGRKLKK-NTPPGENVGVMLPNANGAAVTFFALQSAGRV  708 (1140)
T ss_pred             cCCHHHHHHHHHHHcCCCCeEeECCCCCccCHHHHHHHHHHHHHHHHh-cCCCCCeEEEEcCCchHHHHHHHHHHHCCCE
Confidence            3567888889888886 55776652    999 999999999999975 9999999999999999999999999999999


Q ss_pred             eeeecCCcchHHHHHHHHhccceEEEeChhhHHHH--HHhhccCC-cceEEecCCCCCCCccCCCccccccccCCcCCCC
Q psy8225         120 AAFINTNQRQHILIHSIKVAECKAIIYGAELSEAL--TEVKDSIP-GISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAK  196 (479)
Q Consensus       120 ~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (479)
                      ++|+++..+.+++.+++++++++++|++++..+..  ....+..+ ..+++..++....    ......+.+........
T Consensus       709 ~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~~~~~~~  784 (1140)
T PRK06814        709 PAMINFSAGIANILSACKAAQVKTVLTSRAFIEKARLGPLIEALEFGIRIIYLEDVRAQ----IGLADKIKGLLAGRFPL  784 (1140)
T ss_pred             EEEcCCCCCHHHHHHHHHHcCCCEEEecHHHHhhhcchhHHHHhccCceEEEehHhhcc----CChHHHHHHHhhccCCc
Confidence            99999999999999999999999999987654321  11111111 2233333221100    00000011111111000


Q ss_pred             CCcccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcCCCCCCeEEEeccchhhhhhHHHHHHHHhcCc
Q psy8225         197 SPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGS  276 (479)
Q Consensus       197 ~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G~  276 (479)
                      ..   .+...++++++++|||||||.||||+++|+++...+......++.+.+|++++.+|++|.+|+...++.++..|+
T Consensus       785 ~~---~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~  861 (1140)
T PRK06814        785 VY---FCNRDPDDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARIDFSPEDKVFNALPVFHSFGLTGGLVLPLLSGV  861 (1140)
T ss_pred             cc---cCCCCCCCcEEEEECCCccCCCcEEEecHHHHHHHHHHHHHhhCCCCcCEEEEecchHHHHHHHHHHHHHHHcCC
Confidence            00   023467899999999999999999999999999888888888889999999999999999998778888999999


Q ss_pred             eEEecCC-CChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEE--ecCCChhhHHHHHHHhCcceeeee
Q psy8225         277 TVVIRSK-FSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEF  353 (479)
Q Consensus       277 ~~v~~~~-~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~--G~~l~~~~~~~~~~~~~~~~v~~~  353 (479)
                      ++++.+. .+...+.+.++++++|++..+|++++.+.+...  ..+++++|.+.  |+++++++.+.+.+.++. ++++.
T Consensus       862 ~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~--~~~~~~lr~v~~gg~~l~~~~~~~~~~~~~~-~~~~~  938 (1140)
T PRK06814        862 KVFLYPSPLHYRIIPELIYDTNATILFGTDTFLNGYARYAH--PYDFRSLRYVFAGAEKVKEETRQTWMEKFGI-RILEG  938 (1140)
T ss_pred             EEEEecCcccHHHHHHHHHhcCCEEEEecHHHHHHHHhhcc--cccccceeEEEEcCCcCCHHHHHHHHHHhCC-cEEec
Confidence            9998764 567778899999999999999999998876532  34578899877  889999999999999998 89999


Q ss_pred             ccccccCcccccC---CCCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCccccc
Q psy8225         354 YGATEGNANLMNA---DGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHF  430 (479)
Q Consensus       354 YG~tE~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~~  430 (479)
                      ||+||++..+...   ..+++++|+|.|      ++++++.+.+               ..++.|||+++    |+ +++
T Consensus       939 YG~TE~~~~~~~~~~~~~~~~~vG~p~~------g~~~~~~~~~---------------~~~~~Gel~v~----g~-~~~  992 (1140)
T PRK06814        939 YGVTETAPVIALNTPMHNKAGTVGRLLP------GIEYRLEPVP---------------GIDEGGRLFVR----GP-NVM  992 (1140)
T ss_pred             cccccccceEEecCCCCCCCCcCCccCC------CCeEEEeecC---------------CCCCceEEEEe----CC-Ccc
Confidence            9999998665422   234567777665      6777766532               13568999998    77 899


Q ss_pred             ccccCcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         431 NGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       431 ~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                      .||++++....  +.   ...+|||+|||+|++|+||++++.||.||++
T Consensus       993 ~gY~~~~~~~~--~~---~~~~g~~~TGDl~~~d~dG~l~~~GR~~d~i 1036 (1140)
T PRK06814        993 LGYLRAENPGV--LE---PPADGWYDTGDIVTIDEEGFITIKGRAKRFA 1036 (1140)
T ss_pred             hhhcCCCCCCc--cc---cCCCCeEecCCEEEECCCCeEEEEecccCee
Confidence            99998753221  10   1137999999999999999999999999985

>PRK05691 peptide synthase; Validated

Probab=100.00  E-value=1.6e-48  Score=469.68  Aligned_cols=386  Identities=19%  Similarity=0.223  Sum_probs=315.9

Q ss_pred             cchhHHHHHHHhhcCCCccccEEE---Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCceee
Q psy8225          46 PTYARPLFVRTIREVPMTGAYKYT---VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAA  121 (479)
Q Consensus        46 ~~~l~~~l~~~~~~~p~~~a~~~~---~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v  121 (479)
                      ..++.++|.++++.+|+++|+.+.   +|| ||.++++++|+.|+++|+++|++|+++++|++++++++||++++|++++
T Consensus      1130 ~~~l~~~~~~~a~~~p~~~Al~~~~~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~s~~~iv~~lailkaG~~~v 1209 (4334)
T PRK05691       1130 QAWLPELLNEQARQTPERIALVWDGGSLDYAELHAQANRLAHYLRDKGVGPDVCVAIAAERSPQLLVGLLAILKAGGAYV 1209 (4334)
T ss_pred             cCCHHHHHHHHHHhCCCCeEEEECCceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEE
Confidence            357999999999999999999987   999 9999999999999999999999999999999999999999999999999


Q ss_pred             eecCCcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCCcceEEecCCCCCCCccCCCccccccccCCcCCCCCCccc
Q psy8225         122 FINTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTED  201 (479)
Q Consensus       122 ~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (479)
                      |++|.++.+++.+++++++++++|++......+..    ......+......            ....    ....+   
T Consensus      1210 pld~~~p~~rl~~il~~~~~~~vi~~~~~~~~~~~----~~~~~~~~~~~~~------------~~~~----~~~~~--- 1266 (4334)
T PRK05691       1210 PLDPDYPAERLAYMLADSGVELLLTQSHLLERLPQ----AEGVSAIALDSLH------------LDSW----PSQAP--- 1266 (4334)
T ss_pred             ecCcCChHHHHHHHHHhcCCCEEEecchhhhhccc----ccCceEEeecccc------------cccc----CCCCC---
Confidence            99999999999999999999999998765433211    1111111111100            0000    00000   


Q ss_pred             ccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcCCCCCCeEEEeccchhhhhhHHHHHHHHhcCceEEec
Q psy8225         202 IKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIR  281 (479)
Q Consensus       202 ~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G~~~v~~  281 (479)
                      .....++++++++|||||||.||||+++|+++...+......+++..++++++..|++|..+. ..++.++..|+++++.
T Consensus      1267 ~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~s~-~~~~~~L~~G~~l~i~ 1345 (4334)
T PRK05691       1267 GLHLHGDNLAYVIYTSGSTGQPKGVGNTHAALAERLQWMQATYALDDSDVLMQKAPISFDVSV-WECFWPLITGCRLVLA 1345 (4334)
T ss_pred             CCCCCCCCeEEEEEcCCCCCCCceeEeecHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHHHH-HHHHHHHhCCCEEEEc
Confidence            023456889999999999999999999999999988888888899999999999999998875 6788899999999997


Q ss_pred             C---CCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEE--ecCCChhhHHHHHHHhCcceeeeeccc
Q psy8225         282 S---KFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFYGA  356 (479)
Q Consensus       282 ~---~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~--G~~l~~~~~~~~~~~~~~~~v~~~YG~  356 (479)
                      +   ..++..+++.++++++|++.++|++++.|.+....  ..+++||.++  |+++++++.++|.+.++..++++.||+
T Consensus      1346 ~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~~--~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~ 1423 (4334)
T PRK05691       1346 GPGEHRDPQRIAELVQQYGVTTLHFVPPLLQLFIDEPLA--AACTSLRRLFSGGEALPAELRNRVLQRLPQVQLHNRYGP 1423 (4334)
T ss_pred             CccccCCHHHHHHHHHHcCCeEEECcHHHHHHHHhCccc--ccCCcccEEEEeecCCCHHHHHHHHHhCCCcEEEeCCCc
Confidence            5   36889999999999999999999999998865432  2567899876  899999999999998865599999999


Q ss_pred             cccCcccccC-----CCCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCcccccc
Q psy8225         357 TEGNANLMNA-----DGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFN  431 (479)
Q Consensus       357 tE~~~~~~~~-----~~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~  431 (479)
                      ||++..++..     +....++|+|++      ++++.++|++ ++          +|+.|+.|||+++    |+ +++.
T Consensus      1424 TE~~~~~~~~~~~~~~~~~~~iG~p~~------~~~~~i~d~~-~~----------~vp~G~~GEL~i~----G~-~v~~ 1481 (4334)
T PRK05691       1424 TETAINVTHWQCQAEDGERSPIGRPLG------NVLCRVLDAE-LN----------LLPPGVAGELCIG----GA-GLAR 1481 (4334)
T ss_pred             ChheeeeeeeecccccCCCCcccceeC------CCEEEEECCC-CC----------CCCCCCceEEEec----Cc-ccch
Confidence            9998655421     223345565544      7899999854 44          6789999999998    88 9999


Q ss_pred             cccCcchhHHHHH-hhhcc-CCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         432 GYADKKASEKKIL-RNVYS-HGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       432 gY~~~~~~~~~~~-~~~~~-~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                      ||+|+++.+.+.| .+++. ++.+||+|||+|++++||+++|+||+||+|
T Consensus      1482 GYl~~p~~t~~~f~~~p~~~~~~r~yrTGDl~~~~~dG~l~~~GR~d~qi 1531 (4334)
T PRK05691       1482 GYLGRPALTAERFVPDPLGEDGARLYRTGDRARWNADGALEYLGRLDQQV 1531 (4334)
T ss_pred             hhcCCccccHhhCCCCCCCCCCceEEEccceEEECCCCCEEEecccCcEE
Confidence            9999987776654 33333 245799999999999999999999999985

>KOG1175|consensus

Probab=100.00  E-value=4.7e-48  Score=377.18  Aligned_cols=397  Identities=24%  Similarity=0.299  Sum_probs=317.7

Q ss_pred             hHHHHHHHhhcC-CCccccEEE---------Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcC
Q psy8225          49 ARPLFVRTIREV-PMTGAYKYT---------VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIG  117 (479)
Q Consensus        49 l~~~l~~~~~~~-p~~~a~~~~---------~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G  117 (479)
                      -+.+++++.+.. ++++++++.         +|| |+.+++.++|..|.+.|+++||+|++++|+.+|++++++||.++|
T Consensus        66 ~~n~~~~~~~~~~~~~~a~~~~~~~~~~~~~~t~~el~~~v~~~a~~l~~~g~~kGD~V~~~mPm~~e~~ia~lA~~r~G  145 (626)
T KOG1175|consen   66 CYNCLDRHIKEKGGDKVAIIFEGNEGGDTEVWTYKELLDQVVRLANVLRKCGLKKGDTVAIYMPMIPEAVIAMLACARIG  145 (626)
T ss_pred             hHhhhhhhhhhcCCCCcEEEEEecCCCceEEEEHHHHHHHHHHHHHHHHhcCCCCCcEEEEeccCChHHHHHHHHHhhcC
Confidence            356777775554 899999998         799 999999999999998899999999999999999999999999999


Q ss_pred             ceeeeecCCcchHHHHHHHHhccceEEEeChhhHH---------HHHHhhccCCc-----ce-EEecCCCCCCCccCCCc
Q psy8225         118 VVAAFINTNQRQHILIHSIKVAECKAIIYGAELSE---------ALTEVKDSIPG-----IS-LYAAGTRRKPQAKVLPS  182 (479)
Q Consensus       118 ~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~---------~~~~~~~~~~~-----~~-~~~~~~~~~~~~~~~~~  182 (479)
                      ++..++...++++++...++.+++++|++.+....         ...++....+.     .. +++....         .
T Consensus       146 ai~~~v~~~fs~~~l~~Rl~~~~~k~i~t~d~~~~~~k~i~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---------~  216 (626)
T KOG1175|consen  146 AIHSSVFAGFSAKELLDRLQDSKAKVIITQDVVARGGKSINLKCIVLEALLLVSDKSRPVWLDLIVSRRN---------R  216 (626)
T ss_pred             eEEEEeeccCCHHHHHHHHHhcCCCEEEEEeeeccCCCccchhhhHHHHhhcccccccccceeeEEeccc---------c
Confidence            99999999999999999999999999999753221         12222211110     01 1111110         1


Q ss_pred             cccccccCCcCCCCCCcccccCCCCCCcEEEEEccCCCCCcceEEeehHHH-HHHhhhhhhhcCCCCCCeEEEeccchhh
Q psy8225         183 TTLLDEELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRA-MFMAISGRYQTGLTSDDVVYTTLPLYHT  261 (479)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l-~~~~~~~~~~~~~~~~d~~~~~~pl~h~  261 (479)
                      ...+++.+.......+   ....+.+++.+|+|||||||.||++.+++... +..+......++++++|++++.....++
T Consensus       217 d~~~~~~~~~a~~~~~---~~~~~~edpl~IlfTSGtTg~PK~v~ht~~g~ll~~~~~~~~~~d~q~~dv~~~~~d~GWi  293 (626)
T KOG1175|consen  217 DLFWSLELKKASPEHP---CVPVKAEDPLFILFTSGTTGKPKGVIHTTGGYLLGAALTSRYHFDLQPSDVLWCASDLGWI  293 (626)
T ss_pred             cccHHHHhhhcCCCCC---ceecCccCceEEEecCCCCCCCCceeeccCcchHHHhhhcceeccCCCcceEEEecccCee
Confidence            2234444333333322   25678899999999999999999999999765 4556666778899999999999999999


Q ss_pred             hhhHHHHHHHHhcCceEEecC--CCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCC--CCceeEEE--ecCCCh
Q psy8225         262 AGGLLGIGQCLLGGSTVVIRS--KFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDT--QHSVKMMI--GNGLRP  335 (479)
Q Consensus       262 ~g~~~~~~~~l~~G~~~v~~~--~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~--l~~lr~~~--G~~l~~  335 (479)
                      .|.++.++.++..|+++++.+  ++++..+++.+.+|++|.++..|+.++.|.+........  .++||++.  ||++.+
T Consensus       294 ~g~~~~~~gpl~~Ga~~vl~~g~p~~~~~~~~~v~k~~it~l~t~pt~~r~l~~~~~~~~~~~~~~sLk~~~S~Gepi~~  373 (626)
T KOG1175|consen  294 TGHSYVLYGPLLNGATVVLYEGPPFDPGRIWKILDKYKVTVLYTAPTAYRLLRRLGQEDVTSYSLKSLRTCGSVGEPINP  373 (626)
T ss_pred             eccchhhhhhhhcCcEEEEEcCCCCChhhhhhhHhhcceEEEEeccHHHHHHHHhccccccccccceEEEEeecCccCCc
Confidence            999888999999999999876  459999999999999999999999999887776554333  36799987  999999


Q ss_pred             hhHHHHHHHhCcceeeeeccccccCccccc-C----CCCCCcccccCccccCCCceeeEEeCCCCCCccccCCCcccccc
Q psy8225         336 QVWEPFQKRFGLDRICEFYGATEGNANLMN-A----DGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCK  410 (479)
Q Consensus       336 ~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~-~----~~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~  410 (479)
                      +..+++.+.++...|++.||+||+|+.+.. .    +.++++.+.|.+      +..+.|+|+ +|+.+          +
T Consensus       374 ~~~ew~~~~~~~~pv~e~~~qtEtG~~~i~~~~g~~p~~pg~~~~p~~------g~~v~i~de-~g~~~----------~  436 (626)
T KOG1175|consen  374 EAWEWWKRVTGLDPIYETYGQTETGGICITPKPGKLPIKPGSAGKPFP------GYDVQILDE-NGNEL----------P  436 (626)
T ss_pred             chHHHHHHhcCccchhhceeeeccCceeeeccCCCCCcCccccCCCCC------CcceEEECC-CCCCc----------C
Confidence            999999999998569999999999976643 1    356677777655      799999997 56644          3


Q ss_pred             CC-CCceEEEEeecCCcccccccccCcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         411 AE-EPGILIGMIKESRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       411 ~~-~~Gel~v~~~~~~~~~~~~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                      .+ +.|+|+++..  -|.+.+++||++++   ++.+.+|.+..|+|.|||.|++|+||++|++||.||++
T Consensus       437 ~~~~~G~l~~~~~--~P~~~~r~~~~n~e---rf~~~yf~k~pg~y~tGD~~~rd~dGY~~i~GR~DDvi  501 (626)
T KOG1175|consen  437 PSTGNGELRLKPP--WPPGMFRTLWGNHE---RFRAAYFKKFPGYYFTGDGGRRDEDGYYWILGRVDDVI  501 (626)
T ss_pred             CCCceeEEEEeCC--CCccccccccCCHH---HhhhhhcccCCceEEecCceEEcCCceEEEEecccccc
Confidence            33 6899998832  23378999999987   45567788889999999999999999999999999985

>PRK13391 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=4.9e-47  Score=385.07  Aligned_cols=385  Identities=24%  Similarity=0.299  Sum_probs=298.3

Q ss_pred             HHHhhcCCCccccEEE-----Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCceeeeecCCc
Q psy8225          54 VRTIREVPMTGAYKYT-----VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQ  127 (479)
Q Consensus        54 ~~~~~~~p~~~a~~~~-----~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~l~~~~  127 (479)
                      ..+++++|+++|+++.     +|| ||.++++++|+.|.+.|+++|++|+++++|+++++++++||+++|++++++++..
T Consensus         4 ~~~a~~~p~~~a~~~~~~~~~~ty~~l~~~~~~la~~L~~~g~~~~~~V~v~~~~~~~~~~~~~a~~~~G~~~~~l~~~~   83 (511)
T PRK13391          4 GIHAQTTPDKPAVIMASTGEVVTYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEVCWAAERSGLYYTCVNSHL   83 (511)
T ss_pred             hhhHhhCCCceEEEecCCCCEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhccEEecccccc
Confidence            4677889999999873     999 9999999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHhccceEEEeChhhHHHHHHhhccCCcce-EEecCCCCCCCccCCCccccccccCCcCCCCCCcccccCCC
Q psy8225         128 RQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGIS-LYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTEDIKKNK  206 (479)
Q Consensus       128 ~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (479)
                      +.+++.++++.++++.++++......+.++....+... .+.......     ......+++.......    .  ....
T Consensus        84 ~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~----~--~~~~  152 (511)
T PRK13391         84 TPAEAAYIVDDSGARALITSAAKLDVARALLKQCPGVRHRLVLDGDGE-----LEGFVGYAEAVAGLPA----T--PIAD  152 (511)
T ss_pred             CHHHHHHHHhccCCcEEEEchhhHHHHHHHHhcCCCceEEEEecCCCC-----CcccccHHHHhcCCCC----C--CCCC
Confidence            99999999999999999999877665555544444322 222221110     0011112222211110    0  1123


Q ss_pred             CCCcEEEEEccCCCCCcceEEee--hHHHHH---HhhhhhhhcCCCCCCeEEEeccchhhhhhHHHHHHHHhcCceEEec
Q psy8225         207 PSDKLAYIYTSGTTGLPKAAVMT--HVRAMF---MAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIR  281 (479)
Q Consensus       207 ~~~~~~i~~TSGTTG~pK~v~~s--~~~l~~---~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G~~~v~~  281 (479)
                      .++.+.++|||||||.||+|+++  |.++..   ........+++..++++++.+|++|.+++. ..+.++..|+++++.
T Consensus       153 ~~~~a~il~TSGtTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~h~~~~~-~~~~~~~~g~~~~~~  231 (511)
T PRK13391        153 ESLGTDMLYSSGTTGRPKGIKRPLPEQPPDTPLPLTAFLQRLWGFRSDMVYLSPAPLYHSAPQR-AVMLVIRLGGTVIVM  231 (511)
T ss_pred             cccccEEEECCCCCCCCCEEEEccccchhhhhhHHHHHHHHhcCCCCCCeEEEcCCHHHHHHHH-HHHHHHHcCceEEEC
Confidence            44678899999999999999964  555432   223344556678899999999999998874 456688899999999


Q ss_pred             CCCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCC--CCCCCCceeEEE--ecCCChhhHHHHHHHhCcceeeeecccc
Q psy8225         282 SKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEK--PEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFYGAT  357 (479)
Q Consensus       282 ~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~--~~~~l~~lr~~~--G~~l~~~~~~~~~~~~~~~~v~~~YG~t  357 (479)
                      +.+++..+++.++++++|++.++|+++..+.+....  ....++++|.++  |+++++++.+++++.+|. .+++.||+|
T Consensus       232 ~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~~~~gg~~~~~~~~~~~~~~~g~-~v~~~YG~t  310 (511)
T PRK13391        232 EHFDAEQYLALIEEYGVTHTQLVPTMFSRMLKLPEEVRDKYDLSSLEVAIHAAAPCPPQVKEQMIDWWGP-IIHEYYAAT  310 (511)
T ss_pred             CCCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCchhhcccCCccceeEEEEccCCCCHHHHHHHHHHcCC-ceeeeeccc
Confidence            889999999999999999999999999888765432  223477899877  888999999999999997 899999999


Q ss_pred             ccCcccccC----CCCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCcccccccc
Q psy8225         358 EGNANLMNA----DGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNGY  433 (479)
Q Consensus       358 E~~~~~~~~----~~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~gY  433 (479)
                      |++.++...    ...++++|+|.+      + .++++|++ ++          +++.|+.|||+++    |+  ++.||
T Consensus       311 E~~~~~~~~~~~~~~~~~~vG~~~~------g-~~~i~d~~-~~----------~~~~g~~Gel~~~----g~--~~~gy  366 (511)
T PRK13391        311 EGLGFTACDSEEWLAHPGTVGRAMF------G-DLHILDDD-GA----------ELPPGEPGTIWFE----GG--RPFEY  366 (511)
T ss_pred             cccceEEecCccccccCCCcCCccc------c-eEEEECCC-CC----------CCCCCCceEEEEe----cC--cceEE
Confidence            998654321    234567777665      4 46777743 44          4578899999998    66  56799


Q ss_pred             cCcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         434 ADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       434 ~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                      +++++.+...+.    .+++||+|||+|++|+||.+++.||.||++
T Consensus       367 ~~~~~~~~~~~~----~~~~w~~TGD~g~~~~~g~l~~~gR~~~~i  408 (511)
T PRK13391        367 LNDPAKTAEARH----PDGTWSTVGDIGYVDEDGYLYLTDRAAFMI  408 (511)
T ss_pred             cCChhHhHHhhc----cCCCEEecCCEEEECCCccEEEeccCCCEE
Confidence            998877765543    225999999999999999999999999974

>PRK08276 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=8.3e-47  Score=382.77  Aligned_cols=368  Identities=23%  Similarity=0.291  Sum_probs=288.9

Q ss_pred             Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCceeeeecCCcchHHHHHHHHhccceEEEeCh
Q psy8225          70 VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVAECKAIIYGA  148 (479)
Q Consensus        70 ~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~  148 (479)
                      +|| ||.+++.++|+.|.+.|+++||+|+++++|++++++++|||+++|++++|+++.++.+++.++++.+++++++++.
T Consensus        12 ~ty~el~~~v~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~ii~~~   91 (502)
T PRK08276         12 VTYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPINWHLTAAEIAYIVDDSGAKVLIVSA   91 (502)
T ss_pred             EEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHhcCcEEEecccccCHHHHHHHHhcCCCCEEEEcc
Confidence            999 9999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             hhHHHHHHhhccCC-cceEEecCCCCCCCccCCCccccccccCCcCCCCCCcccccCCCCCCcEEEEEccCCCCCcceEE
Q psy8225         149 ELSEALTEVKDSIP-GISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAV  227 (479)
Q Consensus       149 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~  227 (479)
                      .....+.+..+..+ .+..+.+.....      .....+++....... .     .....++.++++|||||||.||+|+
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~-~-----~~~~~~~~a~i~~TSGtTG~PK~v~  159 (502)
T PRK08276         92 ALADTAAELAAELPAGVPLLLVVAGPV------PGFRSYEEALAAQPD-T-----PIADETAGADMLYSSGTTGRPKGIK  159 (502)
T ss_pred             chhhHHHHHhhhccccccEEEEeCCCC------CccccHHHHHhcCCC-C-----CCCCCCcceEEEECCCCCCCCceEE
Confidence            77666655544443 333332221110      112223332221111 0     1234567899999999999999999


Q ss_pred             eehHHHHHHh------hhhhhhcCCCCCCeEEEeccchhhhhhHHHHHHHHhcCceEEecCCCChhHHHHHHHHhcccEE
Q psy8225         228 MTHVRAMFMA------ISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVA  301 (479)
Q Consensus       228 ~s~~~l~~~~------~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~  301 (479)
                      ++|.++....      ...........++++++.+|++|.+++... +.++..|+++++.+.+++..+++.++++++|++
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~~  238 (502)
T PRK08276        160 RPLPGLDPDEAPGMMLALLGFGMYGGPDSVYLSPAPLYHTAPLRFG-MSALALGGTVVVMEKFDAEEALALIERYRVTHS  238 (502)
T ss_pred             EccCCcchhhhhHHhhhhhhhcccCCCCCEEEEcCcHHHHHHHHHH-HHHHhccceEEEcCCCCHHHHHHHHHHhCCeEE
Confidence            9987654322      111112223467899999999999987554 468889999999988999999999999999999


Q ss_pred             EEehHHHHHHhcCCCC--CCCCCCceeEEE--ecCCChhhHHHHHHHhCcceeeeeccccccCccccc-C---CCCCCcc
Q psy8225         302 QYIGEMCRYLLAVPEK--PEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFYGATEGNANLMN-A---DGKVGAV  373 (479)
Q Consensus       302 ~~~p~~l~~l~~~~~~--~~~~l~~lr~~~--G~~l~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~-~---~~~~~~~  373 (479)
                      .++|+++..+.+....  ...+++++|.++  |++++.++.+++.+.++. .+++.||+||++.++.. .   ...++++
T Consensus       239 ~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~g~~~~~~~~~~~~~~~~~-~~~~~yG~tE~~~~~~~~~~~~~~~~~~~  317 (502)
T PRK08276        239 QLVPTMFVRMLKLPEEVRARYDVSSLRVAIHAAAPCPVEVKRAMIDWWGP-IIHEYYASSEGGGVTVITSEDWLAHPGSV  317 (502)
T ss_pred             EehHHHHHHHHhCccccCCCCCcccceEEEecCCCCCHHHHHHHHHHhCc-HhhhhcccccccceeEecCccccccCCCc
Confidence            9999999999877543  234578999877  889999999999999987 89999999999874432 1   2344566


Q ss_pred             cccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCcccccccccCcchhHHHHHhhhccCCCc
Q psy8225         374 GYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNGYADKKASEKKILRNVYSHGDA  453 (479)
Q Consensus       374 g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~gY~~~~~~~~~~~~~~~~~~~g  453 (479)
                      |+|+       ++.++++|++ +.          +++.|+.|||+++    |+ .++.||+++++.+...+.     .+|
T Consensus       318 G~~~-------~~~~~i~d~~-~~----------~~~~g~~Gel~v~----~~-~~~~gy~~~~~~~~~~~~-----~~~  369 (502)
T PRK08276        318 GKAV-------LGEVRILDED-GN----------ELPPGEIGTVYFE----MD-GYPFEYHNDPEKTAAARN-----PHG  369 (502)
T ss_pred             ceec-------ccEEEEECCC-CC----------CCcCCCceEEEEE----CC-CccchhcCCHHHHHHHhc-----CCC
Confidence            6644       3678888854 44          5688999999998    77 788999999887776554     259


Q ss_pred             EEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         454 AFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       454 ~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                      ||+|||+|++|+||++++.||.||++
T Consensus       370 ~~~TGD~~~~~~~g~~~~~GR~~~~i  395 (502)
T PRK08276        370 WVTVGDVGYLDEDGYLYLTDRKSDMI  395 (502)
T ss_pred             ceeecceEEEcCCcCEEEeccCcceE
Confidence            99999999999999999999999874

>PRK07768 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=4.2e-47  Score=388.61  Aligned_cols=380  Identities=19%  Similarity=0.171  Sum_probs=293.2

Q ss_pred             hhHHHHHHHhhcCCCccccEEE-----Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCceee
Q psy8225          48 YARPLFVRTIREVPMTGAYKYT-----VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAA  121 (479)
Q Consensus        48 ~l~~~l~~~~~~~p~~~a~~~~-----~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v  121 (479)
                      ++.+.|...+..+|+++++...     +|| ||.++++++|++|.+.|+++||+|+++++|+++++++++||+++|++++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ty~el~~~v~~~a~~L~~~g~~~gd~V~l~~~~~~~~~~~~la~~~~g~v~~   82 (545)
T PRK07768          3 RFTEKMYANARTSPRGMVTGEPDAPVRHTWGEVHERARRIAGGLAAAGVGPGDAVAVLAGAPVEIAPTAQGLWMRGASLT   82 (545)
T ss_pred             hHHHHHHHHhhCCCcceEEecCCCceEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHcCcccc
Confidence            3667788889999999988665     999 9999999999999999999999999999999999999999999999999


Q ss_pred             eecCCcchHHH-------HHHHHhccceEEEeChhhHHHHHHhhccCCcceEEecCCCCCCCccCCCccccccccCCcCC
Q psy8225         122 FINTNQRQHIL-------IHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVS  194 (479)
Q Consensus       122 ~l~~~~~~~~l-------~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (479)
                      ++++..+.+++       .++++.++++.+++++........... . ...                 ...++++.....
T Consensus        83 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~-~~~-----------------~~~~~~l~~~~~  143 (545)
T PRK07768         83 MLHQPTPRTDLAVWAEDTLRVIGMIGAKAVVVGEPFLAAAPVLEE-K-GIR-----------------VLTVADLLAADP  143 (545)
T ss_pred             ccCCCCCcchhHHHHHHHHHHHHhCCCCEEEecchhhhhhhhhcc-c-CCc-----------------eeehhhhcccCC
Confidence            99988776544       556788899999998765433322111 0 111                 112233322111


Q ss_pred             CCCCcccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcCCCCC-CeEEEeccchhhhhhHHHHHHHHh
Q psy8225         195 AKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSD-DVVYTTLPLYHTAGGLLGIGQCLL  273 (479)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~-d~~~~~~pl~h~~g~~~~~~~~l~  273 (479)
                      . .    ......+++++++|||||||.||+|+++|+++...+......+++..+ |++++.+|++|.+|++..+..++.
T Consensus       144 ~-~----~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~  218 (545)
T PRK07768        144 I-D----PVETGEDDLALMQLTSGSTGSPKAVQITHGNLYANAEAMFVAAEFDVETDVMVSWLPLFHDMGMVGFLTVPMY  218 (545)
T ss_pred             C-C----cCCCCCCCEEEEEeCCCCCCCCceEEEcHHHHHHHHHHHHHhcCCCCCCceeEEeCCCccchHHHHHHHHHHH
Confidence            1 0    123456889999999999999999999999999888777777777776 899999999999998777778899


Q ss_pred             cCceEEecCC----CChhHHHHHHHHhcccEEEEehHHHHHHhcCC----CCCCCCCCceeEEE--ecCCChhhHHHHHH
Q psy8225         274 GGSTVVIRSK----FSASNFWKDCIKYNCTVAQYIGEMCRYLLAVP----EKPEDTQHSVKMMI--GNGLRPQVWEPFQK  343 (479)
Q Consensus       274 ~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~----~~~~~~l~~lr~~~--G~~l~~~~~~~~~~  343 (479)
                      .|+++++.+.    .++..+++.+++++++++...|..+..+.+..    .....+++++|.++  |+++++++.+++.+
T Consensus       219 ~g~~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~  298 (545)
T PRK07768        219 FGAELVKVTPMDFLRDPLLWAELISKYRGTMTAAPNFAYALLARRLRRQAKPGAFDLSSLRFALNGAEPIDPADVEDLLD  298 (545)
T ss_pred             CCceEEEeCHHHHHHhHHHHHHHHHHhCCEEEECchHHHHHHHHHHhccccccCCCchheeeEEeccCCCCHHHHHHHHH
Confidence            9999888753    26778899999999999877777666554322    11234578899877  88999999999987


Q ss_pred             H---hCcc--eeeeeccccccCcccccCC-----------------------------CCCCcccccCccccCCCceeeE
Q psy8225         344 R---FGLD--RICEFYGATEGNANLMNAD-----------------------------GKVGAVGYIPYIAIPFYPVGLI  389 (479)
Q Consensus       344 ~---~~~~--~v~~~YG~tE~~~~~~~~~-----------------------------~~~~~~g~~~~~~~~~~~~~~~  389 (479)
                      .   ++..  .+++.||+||++..+....                             ..++++|+|++      +++++
T Consensus       299 ~~~~~g~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~------g~~~~  372 (545)
T PRK07768        299 AGARFGLRPEAILPAYGMAEATLAVSFSPCGAGLVVDEVDADLLAALRRAVPATKGNTRRLATLGPPLP------GLEVR  372 (545)
T ss_pred             HHHhcCCCcccccccccccccceEEEccCCCCCcceeeechhHhhccCceeccCCCCcceEEeccCCCC------CCEEE
Confidence            5   5542  4999999999986543211                             12234555544      78899


Q ss_pred             EeCCCCCCccccCCCccccccCCCCceEEEEeecCCcccccccccCcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcE
Q psy8225         390 KCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYF  469 (479)
Q Consensus       390 i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l  469 (479)
                      ++|++ ++          ++++|+.|||+++    |+ .++.||++.+......      ..+|||+|||+|++|+||++
T Consensus       373 i~~~~-~~----------~~~~g~~Gel~v~----~~-~~~~gy~~~~~~~~~~------~~~g~~~TGDl~~~~~~g~l  430 (545)
T PRK07768        373 VVDED-GQ----------VLPPRGVGVIELR----GE-SVTPGYLTMDGFIPAQ------DADGWLDTGDLGYLTEEGEV  430 (545)
T ss_pred             EECCC-CC----------CCCCCCEEEEEEc----cC-cccccccCCCCCcccc------cCCCeeeccceEEEecCCEE
Confidence            88844 44          5688999999998    76 8999999865543322      13789999999999999999


Q ss_pred             EEecCCCCCC
Q psy8225         470 YFKDRTGDAC  479 (479)
Q Consensus       470 ~~~GR~~d~~  479 (479)
                      +++||.||++
T Consensus       431 ~~~GR~~d~i  440 (545)
T PRK07768        431 VVCGRVKDVI  440 (545)
T ss_pred             EEEccccceE
Confidence            9999999974

>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=2.2e-46  Score=380.27  Aligned_cols=372  Identities=21%  Similarity=0.265  Sum_probs=287.6

Q ss_pred             Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCceeeeecCCcchHHHHHHHHhccceEEEeCh
Q psy8225          70 VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVAECKAIIYGA  148 (479)
Q Consensus        70 ~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~  148 (479)
                      +|| ||.++++++|+.|.+.|+++||+|+++++|+++++++++||+++|++++++++..+.+++.++++.+++++++++.
T Consensus        12 ~Ty~el~~~~~~la~~l~~~g~~~g~~V~v~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~i~~~~   91 (509)
T PRK12406         12 RSFDELAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFKPEEIAYILEDSGARVLIAHA   91 (509)
T ss_pred             ecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCcccCHHHHHHHHhccCCcEEEEcc
Confidence            999 9999999999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             hhHHHHHHhhccCCcceEEecCCCCC---------CCccCCCccccccccCCcCCCCCCcccccCCCCCCcEEEEEccCC
Q psy8225         149 ELSEALTEVKDSIPGISLYAAGTRRK---------PQAKVLPSTTLLDEELPEVSAKSPTEDIKKNKPSDKLAYIYTSGT  219 (479)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGT  219 (479)
                      .....+......  .+.++.......         ...........+++.......      ......+++++++|||||
T Consensus        92 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~a~i~~TSGt  163 (509)
T PRK12406         92 DLLHGLASALPA--GVTVLSVPTPPEIAAAYRISPALLTPPAGAIDWEGWLAQQEP------YDGPPVPQPQSMIYTSGT  163 (509)
T ss_pred             chhhhhhhhhhc--ccceeecccccccccccccccccccCCCCccCHHHHhcccCc------cCCCCCCCceEEEECCCC
Confidence            665544332211  112221111000         000001111223322211110      023356789999999999


Q ss_pred             CCCcceEEeehHHHH---HHhhhhhhhcCCCCCCeEEEeccchhhhhhHHHHHHHHhcCceEEecCCCChhHHHHHHHHh
Q psy8225         220 TGLPKAAVMTHVRAM---FMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKY  296 (479)
Q Consensus       220 TG~pK~v~~s~~~l~---~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~  296 (479)
                      ||.||+|+++|.+..   .........+++..++++++.+|++|..+..+.+ .++..|+++++.+.+++..+++.++++
T Consensus       164 TG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~l~~~  242 (509)
T PRK12406        164 TGHPKGVRRAAPTPEQAAAAEQMRALIYGLKPGIRALLTGPLYHSAPNAYGL-RAGRLGGVLVLQPRFDPEELLQLIERH  242 (509)
T ss_pred             CCCCceEEEechhHHHHHHHHHhhhhhcCCCCCceEEEEeCCcccchHHHHH-HHHhhheEEEEccCCCHHHHHHHHHHc
Confidence            999999999775543   3333344567788999999999999998865544 467789999998888999999999999


Q ss_pred             cccEEEEehHHHHHHhcCCCC--CCCCCCceeEEE--ecCCChhhHHHHHHHhCcceeeeeccccccCcccccCC----C
Q psy8225         297 NCTVAQYIGEMCRYLLAVPEK--PEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFYGATEGNANLMNAD----G  368 (479)
Q Consensus       297 ~~t~~~~~p~~l~~l~~~~~~--~~~~l~~lr~~~--G~~l~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~----~  368 (479)
                      ++|++..+|++++.|++....  ...+++++|.++  |+++++++.+++.+.++. .+++.||+||++.++....    .
T Consensus       243 ~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~v~~gg~~~~~~~~~~~~~~~~~-~~~~~YG~tE~~~~~~~~~~~~~~  321 (509)
T PRK12406        243 RITHMHMVPTMFIRLLKLPEEVRAKYDVSSLRHVIHAAAPCPADVKRAMIEWWGP-VIYEYYGSTESGAVTFATSEDALS  321 (509)
T ss_pred             CCeEEEccHHHHHHHHhCchhhcccCCCCceeEEEEcCCCCCHHHHHHHHHHcCC-cEEeeccccccCceEecCcccccc
Confidence            999999999999998875432  234568899877  788999999999999998 8999999999987654322    3


Q ss_pred             CCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCcccccc-cccCcchhHHHHHhhh
Q psy8225         369 KVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFN-GYADKKASEKKILRNV  447 (479)
Q Consensus       369 ~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~-gY~~~~~~~~~~~~~~  447 (479)
                      .++++|.+.+      ++.++++|+. ++          +++.|+.|||+++    ++ .++. +|+++++.++..+   
T Consensus       322 ~~~~~G~~~~------~~~~~i~d~~-~~----------~~~~g~~Gel~v~----~~-~~~~~~y~~~~~~~~~~~---  376 (509)
T PRK12406        322 HPGTVGKAAP------GAELRFVDED-GR----------PLPQGEIGEIYSR----IA-GNPDFTYHNKPEKRAEID---  376 (509)
T ss_pred             cCCCcCccCC------CcEEEEECCC-CC----------CCCCCCceEEEEE----CC-ccccccccCCchhccccc---
Confidence            4567777665      7889988854 44          5688999999998    66 5544 8998887766543   


Q ss_pred             ccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         448 YSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       448 ~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                         .+|||+|||+|++|+||++++.||.||++
T Consensus       377 ---~~~~~~TGD~~~~~~~g~~~~~GR~~d~i  405 (509)
T PRK12406        377 ---RGGFITSGDVGYLDADGYLFLCDRKRDMV  405 (509)
T ss_pred             ---CCCCeEEccEEEEcCCceEEEeecccceE
Confidence               27899999999999999999999999974

>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed

Probab=100.00  E-value=4e-47  Score=377.69  Aligned_cols=322  Identities=15%  Similarity=0.130  Sum_probs=256.1

Q ss_pred             Eeh-hhHHHHHHHHHHHHHcCC-CCCCEEEEEcCCchHHHHHHHHhhhcCceeeeecCCcchHHHHHHHHhccceEEEeC
Q psy8225          70 VTF-QVEDHSNRIANFFKSKGL-QRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVAECKAIIYG  147 (479)
Q Consensus        70 ~Ty-~l~~~~~~la~~L~~~gi-~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~  147 (479)
                      |.| ||.+++.++|++|++.|+ ++|++|+++++|+++++++++||+++|++++|++|.++.+++.++++++++++++++
T Consensus        20 ~~~~el~~~~~~~a~~L~~~g~~~~~~~V~i~~~n~~e~~~~~~A~~~~G~~~vpl~~~~~~~~~~~~~~~~~~~~~i~~   99 (452)
T PRK07445         20 YNSQRFYQLAQQLYLQLQQLATPRTPPKILLAESDPLQFLAAFLAAVAAGCPVFLANPHWGQQEWQQVLNLVQPDQIWGL   99 (452)
T ss_pred             cChHHHHHHHHHHHHHHHHhcCCCCCCeEEEecCCCHHHHHHHHHHHHhCcEEEeeccCCCHHHHHHHHHhcCCCEEEec
Confidence            899 999999999999999988 579999999999999999999999999999999999999999999999999999987


Q ss_pred             hhhHHHHHHhhccCCcceEEecCCCCCCCccCCCccccccccCCcCCCCCCcccccCCCCCCcEEEEEccCCCCCcceEE
Q psy8225         148 AELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAV  227 (479)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~  227 (479)
                      .+.....              ..                 . ..   .. .    ....+++.++++|||||||.||+|+
T Consensus       100 ~~~~~~~--------------~~-----------------~-~~---~~-~----~~~~~~~~~~i~~TSGTTG~PKgV~  139 (452)
T PRK07445        100 DQLKLSH--------------PP-----------------P-LP---SQ-G----ILPNLETGWIMIPTGGSSGQIRFAI  139 (452)
T ss_pred             Ccccccc--------------CC-----------------C-CC---cc-c----cCCCCCCcEEEEeCCCCCCCCcEEE
Confidence            5432100              00                 0 00   00 0    1124578999999999999999999


Q ss_pred             eehHHHHHHhhhhhhhcCCCCCCeEEEeccchhhhhhHHHHHHHHhcCceEEecCCCChhHHHHHHHHhcccEEEEehHH
Q psy8225         228 MTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEM  307 (479)
Q Consensus       228 ~s~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~~  307 (479)
                      +||+++...+......+++.+ ++.++.+|++|.+|+ ..++.++..|+++++.+............+++++++.++|++
T Consensus       140 ~t~~~l~~~~~~~~~~~~~~~-~~~~~~~Pl~h~~g~-~~~~~~l~~G~t~v~~~~~~~~~~~~~~~~~~~t~~~~vP~~  217 (452)
T PRK07445        140 HTWETLTASVQGFQRYFQLQQ-VNSFCVLPLYHVSGL-MQFMRSFLTGGKLVILPYKRLKSGQELPPNPSDFFLSLVPTQ  217 (452)
T ss_pred             echHHHHHHHHHHHHHhcCCC-CceEeccCchhhhhH-HHHHHHHHcCCeEEEcChHhccchhhhhhhcCceEEEehHHH
Confidence            999999888777766666654 467889999999997 456778999999998774333333334457889999999999


Q ss_pred             HHHHhcCCCCCCCCCCceeEEE--ecCCChhhHHHHHHHhCcceeeeeccccccCcccccC-C----CCCCcccccCccc
Q psy8225         308 CRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFYGATEGNANLMNA-D----GKVGAVGYIPYIA  380 (479)
Q Consensus       308 l~~l~~~~~~~~~~l~~lr~~~--G~~l~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~-~----~~~~~~g~~~~~~  380 (479)
                      ++.+.+..   ...+++||.++  |+++++++.+.+.+ ++. ++++.||+||++..+... +    ..++++|+|.|  
T Consensus       218 l~~l~~~~---~~~l~~l~~i~~gG~~l~~~~~~~~~~-~~~-~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~p--  290 (452)
T PRK07445        218 LQRLLQLR---PQWLAQFRTILLGGAPAWPSLLEQARQ-LQL-RLAPTYGMTETASQIATLKPDDFLAGNNSSGQVLP--  290 (452)
T ss_pred             HHHHHhhC---hhhhhcceEEEECCccCCHHHHHHHHh-cCC-eEecCcchhhhcccccccCchhhccCCCcCCccCC--
Confidence            99988632   22467899877  78899999988875 577 899999999987554322 1    23456677655  


Q ss_pred             cCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCcccccccccCcchhHHHHHhhhccCCCcEEEcCCe
Q psy8225         381 IPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDI  460 (479)
Q Consensus       381 ~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~  460 (479)
                          +++++++                   .|+.|||+++    |+ .++.||+++...           .+|||+|||+
T Consensus       291 ----~~~v~i~-------------------~g~~Gel~v~----g~-~~~~gY~~~~~~-----------~~g~~~TGDl  331 (452)
T PRK07445        291 ----HAQITIP-------------------ANQTGNITIQ----AQ-SLALGYYPQILD-----------SQGIFETDDL  331 (452)
T ss_pred             ----CCeEEEc-------------------CCCcceEEEe----CC-ccchhhcCCccC-----------CCCEEECCCE
Confidence                6777765                   1357999998    77 899999985421           2789999999


Q ss_pred             eEEecCCcEEEecCCCCCC
Q psy8225         461 LIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       461 g~~d~dG~l~~~GR~~d~~  479 (479)
                      |++|+||+++|.||.||++
T Consensus       332 ~~~d~dG~l~~~GR~dd~I  350 (452)
T PRK07445        332 GYLDAQGYLHILGRNSQKI  350 (452)
T ss_pred             EEEcCCCCEEEEeecCCEE
Confidence            9999999999999999974

>PLN03051 acyl-activating enzyme; Provisional

Probab=100.00  E-value=6.1e-47  Score=382.36  Aligned_cols=355  Identities=15%  Similarity=0.133  Sum_probs=254.2

Q ss_pred             cCCchHHHHHHHHhhhcCceeeeecCCcchHHHHHHHHhccceEEEeChhh------HHHHHHhhccCCcceEEecCCCC
Q psy8225         100 MEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVAECKAIIYGAEL------SEALTEVKDSIPGISLYAAGTRR  173 (479)
Q Consensus       100 ~~n~~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~------~~~~~~~~~~~~~~~~~~~~~~~  173 (479)
                      ++|++|+++++|||+++|++++|+++.++.+++.+++++++++++|+++..      .+.+.++....+...+++.....
T Consensus         1 ~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~el~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   80 (499)
T PLN03051          1 MPMTVDAVIIYLAIVLAGCVVVSVADSFSAKEIATRLDISGAKGVFTQDVVLRGGRALPLYSKVVEAAPAKAIVLPAAGE   80 (499)
T ss_pred             CCCcHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEecCceeeCCeeecchhhhhhcccceEEEEeccCc
Confidence            589999999999999999999999999999999999999999999997642      12222222212211222211110


Q ss_pred             CCCccCCCccccccccCCcCCC----CCCcccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcCCCCC
Q psy8225         174 KPQAKVLPSTTLLDEELPEVSA----KSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSD  249 (479)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~  249 (479)
                      ............+++++.....    ...........++++++|+|||||||.||||++||++++.++......+++..+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~  160 (499)
T PLN03051         81 PVAVPLREQDLSWCDFLGVAAAQGSVGGNEYSPVYAPVESVTNILFSSGTTGEPKAIPWTHLSPLRCASDGWAHMDIQPG  160 (499)
T ss_pred             ccCCccccCcccHHHHHhhhccccccccccCCcccCCccceEEEEeCCCCCCCCceEEEccchHHHHHHHHHHhcCCCCC
Confidence            0000000011233333311110    000000012345889999999999999999999999988766655556778889


Q ss_pred             CeEEEeccchhhhhhHHHHHHHHhcCceEEecC-CCChhHHHHHHHHhcccEEEEehHHHHHHhcCCC--CCCCCCCcee
Q psy8225         250 DVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRS-KFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPE--KPEDTQHSVK  326 (479)
Q Consensus       250 d~~~~~~pl~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~--~~~~~l~~lr  326 (479)
                      |++++.+|++|..|+ ..++.++..|+++++.+ .+++..+++.|+++++|++.++|+++..|++...  ....++++||
T Consensus       161 d~~l~~~pl~h~~g~-~~~~~~l~~G~t~v~~~~~~~~~~~~~~i~~~~vt~~~~vP~~~~~l~~~~~~~~~~~~~~~Lr  239 (499)
T PLN03051        161 DVVCWPTNLGWMMGP-WLLYSAFLNGATLALYGGAPLGRGFGKFVQDAGVTVLGLVPSIVKAWRHTGAFAMEGLDWSKLR  239 (499)
T ss_pred             CEEEEccCcceeeeh-HHHHHHHHcCCEEEecCCCCCcHHHHHHHHHhCCcEEEeCHHHHHHHHhcCccccccCCchhhe
Confidence            999999999999986 56778899999999887 4788999999999999999999999999887643  2334678999


Q ss_pred             EEE--ecCCChhhHHHHHHHh--CcceeeeeccccccCcccc-cC---CCCCCcccccCccccCCCceeeEEeCCCCCCc
Q psy8225         327 MMI--GNGLRPQVWEPFQKRF--GLDRICEFYGATEGNANLM-NA---DGKVGAVGYIPYIAIPFYPVGLIKCDPETSEP  398 (479)
Q Consensus       327 ~~~--G~~l~~~~~~~~~~~~--~~~~v~~~YG~tE~~~~~~-~~---~~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~  398 (479)
                      .++  |+++++++.+++++.+  +. .+++.||+||++..+. ..   ..+++++|+|.+      +++++|+|++ ++ 
T Consensus       240 ~i~~gG~~~~~~~~~~~~~~~~~~~-~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~------~~~~~ivd~~-g~-  310 (499)
T PLN03051        240 VFASTGEASAVDDVLWLSSVRGYYK-PVIEYCGGTELASGYISSTLLQPQAPGAFSTASL------GTRFVLLNDN-GV-  310 (499)
T ss_pred             EEEecCCCCCHHHHHHHHHhccccc-eeEeeeccccccceeecccccCCCCCccccCCCC------CceEEEECCC-CC-
Confidence            876  7899999998887743  35 8999999999864332 11   234567777665      7899999854 44 


Q ss_pred             cccCCCccccccCC--CCceEEEEeecCCcccc--cccccCcchhHHHHHhh-hc--cCCCcEEEcCCeeEEecCCcEEE
Q psy8225         399 IRNKDGLCIPCKAE--EPGILIGMIKESRAESH--FNGYADKKASEKKILRN-VY--SHGDAAFNTGDILIKDKFQYFYF  471 (479)
Q Consensus       399 i~~~~g~~~~~~~~--~~Gel~v~~~~~~~~~~--~~gY~~~~~~~~~~~~~-~~--~~~~g~~~TGD~g~~d~dG~l~~  471 (479)
                               +++.|  +.|||+++    || .+  +.||+|++. ++.+++. .+  ..+.+||+|||+|++|+||+|+|
T Consensus       311 ---------~~~~g~~~~Gel~v~----g~-~~~~~~gy~~~~~-~~~~~~g~~~~~~~~~~~~~TGDlg~~d~dG~l~~  375 (499)
T PLN03051        311 ---------PYPDDQPCVGEVALA----PP-MLGASDRLLNADH-DKVYYKGMPMYGSKGMPLRRHGDIMKRTPGGYFCV  375 (499)
T ss_pred             ---------CCCCCCCcceEEEEe----cC-cCCCCccccCCcc-cceeeecCCccccCCcceeecCCeEEECCCCcEEE
Confidence                     45666  58999998    77 44  689998653 3322210 00  01234899999999999999999


Q ss_pred             ecCCCCCC
Q psy8225         472 KDRTGDAC  479 (479)
Q Consensus       472 ~GR~~d~~  479 (479)
                      +||+||++
T Consensus       376 ~gR~~d~i  383 (499)
T PLN03051        376 QGRADDTM  383 (499)
T ss_pred             EeccCCEE
Confidence            99999985

>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=5.7e-46  Score=372.01  Aligned_cols=341  Identities=22%  Similarity=0.212  Sum_probs=274.8

Q ss_pred             HHHhhcCCCccccEEE---Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCceeeeecCCcch
Q psy8225          54 VRTIREVPMTGAYKYT---VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQ  129 (479)
Q Consensus        54 ~~~~~~~p~~~a~~~~---~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~l~~~~~~  129 (479)
                      ..+++.+|+++|+.+.   +|| ||.++++++|..|.+.|+++||+|+++++|+++++++++||+++|++++|+++..+.
T Consensus        10 ~~~a~~~~~~~a~~~~~~~~ty~el~~~~~~~a~~L~~~g~~~~~~v~l~~~~~~~~~~~~la~~~~G~~~v~~~~~~~~   89 (458)
T PRK09029         10 RHWAQVRPQAIALRLNDEVLTWQQLCARIDQLAAGFAQQGVVEGSGVALRGKNSPETLLAYLALLQCGARVLPLNPQLPQ   89 (458)
T ss_pred             HHHHHhCCCceeeecCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHHHcCCEEeecCCCCCH
Confidence            4557899999999876   999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccceEEEeChhhHHHHHHhhccCCcceEEecCCCCCCCccCCCccccccccCCcCCCCCCcccccCCCCCC
Q psy8225         130 HILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTEDIKKNKPSD  209 (479)
Q Consensus       130 ~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (479)
                      +++.++++++++++++++.+... +..    .....                    +..    .....    .....+++
T Consensus        90 ~~~~~~~~~~~~~~~i~~~~~~~-~~~----~~~~~--------------------~~~----~~~~~----~~~~~~~~  136 (458)
T PRK09029         90 PLLEELLPSLTLDFALVLEGENT-FSA----LTSLH--------------------LQL----VEGAH----AVAWQPQR  136 (458)
T ss_pred             HHHHHHHHhcCCCEEEEcCcccc-hhh----ccccc--------------------ccc----ccccC----cccCCCCC
Confidence            99999999999999999765422 100    00000                    000    00000    02335688


Q ss_pred             cEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcCCCCCCeEEEeccchhhhhhHHHHHHHHhcCceEEecCCCChhHH
Q psy8225         210 KLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNF  289 (479)
Q Consensus       210 ~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~  289 (479)
                      +++++|||||||.||+|.+||+++...+......++...+++++..+|++|.+|+ ..++.++..|+++++.+.   ..+
T Consensus       137 ~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~-~~~~~~l~~G~~v~~~~~---~~~  212 (458)
T PRK09029        137 LATMTLTSGSTGLPKAAVHTAQAHLASAEGVLSLMPFTAQDSWLLSLPLFHVSGQ-GIVWRWLYAGATLVVRDK---QPL  212 (458)
T ss_pred             eEEEEECCCCCCCCCEEEEeHHHHHHHHHHHhhcCCCCccceEEEecCcHhhhhh-HHHHHHHhCCceEEeCCh---HHH
Confidence            8999999999999999999999999988887778888999999999999999997 455678899999998774   456


Q ss_pred             HHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEE--ecCCChhhHHHHHHHhCcceeeeeccccccCcccccC-
Q psy8225         290 WKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFYGATEGNANLMNA-  366 (479)
Q Consensus       290 ~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~--G~~l~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~-  366 (479)
                      ++.+  .+++.+..+|+++..+......    ..++|.++  |+++++++.+++.+ ++. ++++.||+||++...... 
T Consensus       213 ~~~i--~~~t~~~~~P~~~~~l~~~~~~----~~~l~~i~~gG~~~~~~~~~~~~~-~g~-~~~~~YG~tE~~~~~~~~~  284 (458)
T PRK09029        213 EQAL--AGCTHASLVPTQLWRLLDNRSE----PLSLKAVLLGGAAIPVELTEQAEQ-QGI-RCWCGYGLTEMASTVCAKR  284 (458)
T ss_pred             HHHH--hhceeeecChHHHHHHHhcccc----CCcceEEEECCCCCCHHHHHHHHH-cCC-cEeccccccccCcceeccC
Confidence            6666  4789999999999988876443    34688776  78899999998875 587 899999999998654322 


Q ss_pred             CCCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCcccccccccCcchhHHHHHhh
Q psy8225         367 DGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNGYADKKASEKKILRN  446 (479)
Q Consensus       367 ~~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~gY~~~~~~~~~~~~~  446 (479)
                      .....++|+|++      ++.+++++                      |||+++    |+ .++.||+++++.+...   
T Consensus       285 ~~~~~~~G~~~~------~~~~~i~~----------------------gel~v~----g~-~~~~gY~~~~~~~~~~---  328 (458)
T PRK09029        285 ADGLAGVGSPLP------GREVKLVD----------------------GEIWLR----GA-SLALGYWRQGQLVPLV---  328 (458)
T ss_pred             CCCCCCCCCCCC------CCEEEEeC----------------------CEEEEe----cC-ceeeeeecCccccccc---
Confidence            222345777655      67776543                      789988    77 8999999887655322   


Q ss_pred             hccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         447 VYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       447 ~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                         .++|||+|||+|++| ||++++.||+||++
T Consensus       329 ---~~~~~~~TGD~~~~~-~g~l~~~gR~~d~i  357 (458)
T PRK09029        329 ---NDEGWFATRDRGEWQ-NGELTILGRLDNLF  357 (458)
T ss_pred             ---cCCCccCCCCcEEEe-CCEEEEecccccce
Confidence               247999999999999 99999999999985

>TIGR01923 menE O-succinylbenzoate-CoA ligase

Probab=100.00  E-value=9.4e-46  Score=368.53  Aligned_cols=339  Identities=22%  Similarity=0.255  Sum_probs=272.4

Q ss_pred             eh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCceeeeecCCcchHHHHHHHHhccceEEEeChh
Q psy8225          71 TF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVAECKAIIYGAE  149 (479)
Q Consensus        71 Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~  149 (479)
                      || ||.++++++|+.|.+.|+++||+|+++++|+++++++++||+++|++++++++..+.+++..++++++++++++++.
T Consensus         1 Ty~~l~~~~~~~a~~l~~~g~~~gd~v~i~~~~~~~~~~~~la~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~   80 (436)
T TIGR01923         1 TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTENERTNQLEDLDVQLLLTDSL   80 (436)
T ss_pred             CHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhcCcEEEecCcCCCHHHHHHHHHhcCCCEEEEcCc
Confidence            79 99999999999999999999999999999999999999999999999999999999999999999999999999875


Q ss_pred             hHHHHHHhhccCCcceEEecCCCCCCCccCCCccccccccCCcCCCCCCcccccCCCCCCcEEEEEccCCCCCcceEEee
Q psy8225         150 LSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMT  229 (479)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s  229 (479)
                      .....         ....                 .+............  .......+++++++|||||||.||+|.++
T Consensus        81 ~~~~~---------~~~~-----------------~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~TSGtTG~PK~v~~s  132 (436)
T TIGR01923        81 LEEKD---------FQAD-----------------SLDRIEAAGRYETS--LSASFNMDQIATLMFTSGTTGKPKAVPHT  132 (436)
T ss_pred             ccccc---------eeec-----------------chHhhhhccccccc--ccccCCcCceEEEEeCCCCCCCCcEEEEe
Confidence            32100         0000                 00000000000000  01234567899999999999999999999


Q ss_pred             hHHHHHHhhhhhhhcCCCCCCeEEEeccchhhhhhHHHHHHHHhcCceEEecCCCChhHHHHHHHHhcccEEEEehHHHH
Q psy8225         230 HVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCR  309 (479)
Q Consensus       230 ~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~  309 (479)
                      |+++...+......++++++|++++.+|++|.+++ ..++.++..|+++++.+.++  .+++.+.++++|++..+|+++.
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-~~~~~~l~~g~~~~~~~~~~--~~~~~l~~~~~t~~~~~P~~l~  209 (436)
T TIGR01923       133 FRNHYASAVGSKENLGFTEDDNWLLSLPLYHISGL-SILFRWLIEGATLRIVDKFN--QLLEMIANERVTHISLVPTQLN  209 (436)
T ss_pred             hHHHHHHHHHHHhhcCCCCCceEEEccCcHhHHHH-HHHHHHHhcCceEEecchHH--HHHHHHHHhCCeEEEeHHHHHH
Confidence            99999888888888899999999999999999887 56778899999999987654  8999999999999999999999


Q ss_pred             HHhcCCCCCCCCCCceeEEE--ecCCChhhHHHHHHHhCcceeeeeccccccCcccccCCC----CCCcccccCccccCC
Q psy8225         310 YLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFYGATEGNANLMNADG----KVGAVGYIPYIAIPF  383 (479)
Q Consensus       310 ~l~~~~~~~~~~l~~lr~~~--G~~l~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~----~~~~~g~~~~~~~~~  383 (479)
                      .|.+.....    +++|.++  |+++++++.+++++ ++. .+++.||+||++..+.....    ...++|.|++     
T Consensus       210 ~l~~~~~~~----~~l~~~~~~G~~~~~~~~~~~~~-~~~-~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~-----  278 (436)
T TIGR01923       210 RLLDEGGHN----ENLRKILLGGSAIPAPLIEEAQQ-YGL-PIYLSYGMTETCSQVTTATPEMLHARPDVGRPLA-----  278 (436)
T ss_pred             HHHhCcCCC----CceEEEEECCCCCCHHHHHHHHH-hCC-ceeeEecCCccchhccCcCccccccccCCCccCC-----
Confidence            998865432    6788776  89999999988875 588 89999999999876543221    1113566554     


Q ss_pred             CceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCcccccccccCcchhHHHHHhhhccCCCcEEEcCCeeEE
Q psy8225         384 YPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIK  463 (479)
Q Consensus       384 ~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~  463 (479)
                       ++++++.+.+                .++.|||+++    ++ .++.||++++..+...+.      +|||+|||+|++
T Consensus       279 -~~~~~i~~~~----------------~~~~Gel~v~----~~-~~~~gy~~~~~~~~~~~~------~~~~~TGD~~~~  330 (436)
T TIGR01923       279 -GREIKIKVDN----------------KEGHGEIMVK----GA-NLMKGYLYQGELTPAFEQ------QGWFNTGDIGEL  330 (436)
T ss_pred             -CcEEEEEeCC----------------CCCceEEEEE----CC-ccchhhCCChhhhhhhhc------CCCeeccceEEE
Confidence             6777763322                1257999998    77 899999998776655432      789999999999


Q ss_pred             ecCCcEEEecCCCCCC
Q psy8225         464 DKFQYFYFKDRTGDAC  479 (479)
Q Consensus       464 d~dG~l~~~GR~~d~~  479 (479)
                      |+||++++.||.||++
T Consensus       331 ~~dg~~~~~GR~~d~i  346 (436)
T TIGR01923       331 DGEGFLYVLGRRDDLI  346 (436)
T ss_pred             cCCCCEEEeccccCeE
Confidence            9999999999999974

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.

>PRK08308 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.7e-44  Score=354.95  Aligned_cols=305  Identities=16%  Similarity=0.138  Sum_probs=257.9

Q ss_pred             Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCceeeeecCCcchHHHHHHHHhccceEEEeCh
Q psy8225          70 VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVAECKAIIYGA  148 (479)
Q Consensus        70 ~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~  148 (479)
                      +|| ||.++++++|+.|. .|+++|++|+++++|+++++++++|++++|++++|+++..+.+++..+++++++++++++.
T Consensus         9 ~ty~el~~~~~~~a~~l~-~~~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~   87 (414)
T PRK08308          9 YSKSDFDLRLQRYEEMEQ-FQEAAGNRFAVCLKDPFDIITLVFFLKEKGASVLPIHPDTPKEAAIRMAKRAGCHGLLYGE   87 (414)
T ss_pred             ecHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCChHHHHHHHHHHHCCeEEEecCCCCCHHHHHHHHHhCCCCEEEecC
Confidence            999 99999999999985 6899999999999999999999999999999999999999999999999999999999865


Q ss_pred             hhHHHHHHhhccCCcceEEecCCCCCCCccCCCccccccccCCcCCCCCCcccccCCCCCCcEEEEEccCCCCCcceEEe
Q psy8225         149 ELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVM  228 (479)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~  228 (479)
                      ....                              .   ...             ....++++++++|||||||.||+|++
T Consensus        88 ~~~~------------------------------~---~~~-------------~~~~~~~~~~i~~TSGtTG~PKgv~~  121 (414)
T PRK08308         88 SDFT------------------------------K---LEA-------------VNYLAEEPSLLQYSSGTTGEPKLIRR  121 (414)
T ss_pred             cccc------------------------------c---ccC-------------CCCCCCCceEEEECCCCCCCCcEEEE
Confidence            2100                              0   000             11245788999999999999999999


Q ss_pred             ehHHHHHHhhhhhhhcCCCCCCeEEEeccchhhhhhHHHHHHHHhcCceEEecCCCChhHHHHHHHHhcccEEEEehHHH
Q psy8225         229 THVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMC  308 (479)
Q Consensus       229 s~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~~l  308 (479)
                      +|+++...+......+.+..+|+++..+|++|.+|++..++.++..|+++++.+.+++..+++.++++++|.+.++|+++
T Consensus       122 s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~  201 (414)
T PRK08308        122 SWTEIDREIEAYNEALNCEQDETPIVACPVTHSYGLICGVLAALTRGSKPVIITNKNPKFALNILRNTPQHILYAVPLML  201 (414)
T ss_pred             ehHhHHHHHHHHHHhhCCCcccEEEEecCcHHHHHHHHHHHHHHHcCCEEEecCCCCHHHHHHHHHHhCCeEEEcCHHHH
Confidence            99999988887777788889999999999999999888889999999999999889999999999999999999999999


Q ss_pred             HHHhcCCCCCCCCCCceeEEE--ecCCChhhHHHHHHHhCcceeeeeccccccCcccccCC-CCCCcccccCccccCCCc
Q psy8225         309 RYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFYGATEGNANLMNAD-GKVGAVGYIPYIAIPFYP  385 (479)
Q Consensus       309 ~~l~~~~~~~~~~l~~lr~~~--G~~l~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~-~~~~~~g~~~~~~~~~~~  385 (479)
                      ..+.+.....    .+++.++  |+++++++.+++++. +. ++++.||+||++....... ..++++|+|+|      +
T Consensus       202 ~~l~~~~~~~----~~l~~~~~~G~~l~~~~~~~~~~~-~~-~~~~~YG~tE~~~~~~~~~~~~~~~~G~p~~------~  269 (414)
T PRK08308        202 HILGRLLPGT----FQFHAVMTSGTPLPEAWFYKLRER-TT-YMMQQYGCSEAGCVSICPDMKSHLDLGNPLP------H  269 (414)
T ss_pred             HHHHhcCCcc----ccccEEEEccCCCCHHHHHHHHHh-CC-hhhhccCccccCCeeecCCCCCCCccCccCC------C
Confidence            9988764321    2455554  889999999999876 45 8999999999986544322 34566777665      6


Q ss_pred             eeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCcccccccccCcchhHHHHHhhhccCCCcEEEcCCeeEEec
Q psy8225         386 VGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDK  465 (479)
Q Consensus       386 ~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~  465 (479)
                      +++.+.+.                 .++.|||+++    +.                         ++||+|||+|++|+
T Consensus       270 ~~~~~~~~-----------------~~~~gel~v~----~~-------------------------~~~~~TGDl~~~~~  303 (414)
T PRK08308        270 VSVSAGSD-----------------ENAPEEIVVK----MG-------------------------DKEIFTKDLGYKSE  303 (414)
T ss_pred             eEEEEecC-----------------CCCCceEEEE----cC-------------------------CceEECCceEEECC
Confidence            77776542                 2457999986    11                         67999999999999


Q ss_pred             CCcEEEecCCCCCC
Q psy8225         466 FQYFYFKDRTGDAC  479 (479)
Q Consensus       466 dG~l~~~GR~~d~~  479 (479)
                      ||++++.||.||++
T Consensus       304 dg~l~~~GR~~~~i  317 (414)
T PRK08308        304 RGTLHFMGRMDDVI  317 (414)
T ss_pred             CccEEEecccCCeE
Confidence            99999999999974

>PTZ00297 pantothenate kinase; Provisional

Probab=100.00  E-value=4.8e-39  Score=346.22  Aligned_cols=371  Identities=9%  Similarity=0.011  Sum_probs=265.7

Q ss_pred             chhHHHHHHHhhcCCCccccEE-------E-Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcC
Q psy8225          47 TYARPLFVRTIREVPMTGAYKY-------T-VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIG  117 (479)
Q Consensus        47 ~~l~~~l~~~~~~~p~~~a~~~-------~-~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G  117 (479)
                      .++.++|.+.++++|+++|+.+       . +|| |+.++++++|++|.++|+++||+|+|+++|++||+++++||+++|
T Consensus       427 ~Tl~dll~~~a~~~pd~~al~~~~~~g~~~~lTY~El~~~V~~lAa~L~~lGV~~GDrVaIls~N~~Ewvia~lA~~~~G  506 (1452)
T PTZ00297        427 RSLGEMWERSVTRHSTFRCLGQTSESGESEWLTYGTVDARARELGSGLLALGVRPGDVIGVDCEASRNIVILEVACALYG  506 (1452)
T ss_pred             CCHHHHHHHHHHHCCCCeEEEEeccCCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcC
Confidence            6789999999999999999963       2 999 999999999999999999999999999999999999999999999


Q ss_pred             ceeeeecCCcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCCcce-EEecCCCCCC---C--ccCCCccccccccCC
Q psy8225         118 VVAAFINTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGIS-LYAAGTRRKP---Q--AKVLPSTTLLDEELP  191 (479)
Q Consensus       118 ~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~--~~~~~~~~~~~~~~~  191 (479)
                      ++++|+++.  .+++.+++++++++++|++.+....+.++...  .++ +++.+.....   .  .........|++++.
T Consensus       507 aV~VPly~t--~~eL~yIL~~S~akvVfv~~~~l~kl~~i~~~--~Lr~IIv~d~~~~~~~~~~~~~~~i~~~s~~~ll~  582 (1452)
T PTZ00297        507 FTTLPLVGK--GSTMRTLIDEHKIKVVFADRNSVAAILTCRSR--KLETVVYTHSFYDEDDHAVARDLNITLIPYEFVEQ  582 (1452)
T ss_pred             CEEEeCCCC--HHHHHHHHHhcCCcEEEEchhHHHHHHhhccc--CCcEEEEECCCcccccccccccCCcceeeHHHHHh
Confidence            999999864  67999999999999999998777666554322  333 4444321000   0  000112345777766


Q ss_pred             cCCCCCCcccccCCCCCCcEEEEE---ccCCCCCcceEEeehHHHHHHhhhhhhhc---CCCCCCeEEEeccchhhhhhH
Q psy8225         192 EVSAKSPTEDIKKNKPSDKLAYIY---TSGTTGLPKAAVMTHVRAMFMAISGRYQT---GLTSDDVVYTTLPLYHTAGGL  265 (479)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~i~~---TSGTTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~d~~~~~~pl~h~~g~~  265 (479)
                      .+..... .......+++++.|+|   ||||||.||||++||+|++.++.......   ....+|++++.+|++|+++..
T Consensus       583 ~G~~~~~-~~~~~~~~dDlatIiYtSyTSGTTG~PKGVmLTH~Nlla~~~~~~~~~~~~~~~~~D~~Ls~LPLaHI~er~  661 (1452)
T PTZ00297        583 KGRLCPV-PLKEHVTTDTVFTYVVDNTTSASGDGLAVVRVTHADVLRDISTLVMTGVLPSSFKKHLMVHFTPFAMLFNRV  661 (1452)
T ss_pred             cCcccCc-cccCCCCcccEEEEEecCCCCCCCcCCcEEEEeHHHHHHHHHHHhhhccccCCCCCCEEEEechHHHHHHHH
Confidence            5432111 1113346788999986   99999999999999999999888765432   346789999999999999964


Q ss_pred             HHHHHHHhcCceEEecCCCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCC--------------------------C
Q psy8225         266 LGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKP--------------------------E  319 (479)
Q Consensus       266 ~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~--------------------------~  319 (479)
                       ..+.++..|+++..   +++..+++.|++++||++.++|.+++.+.......                          .
T Consensus       662 -~~~~~l~~G~~I~~---~d~~~lledL~~~rPTv~~~VPrv~ekI~~~i~~~~~~~~~~~~~lf~~A~~~k~~~~~~g~  737 (1452)
T PTZ00297        662 -FVLGLFAHGSAVAT---VDAAHLQRAFVKFQPTILVAAPSLFSTSRLQLSRANERYSAVYSWLFERAFQLRSRLINIHR  737 (1452)
T ss_pred             -HHHHHHHcCCEEEe---CCHHHHHHHHHHHCCEEEEecHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCC
Confidence             45667889998864   47899999999999999999999988654321100                          0


Q ss_pred             CC----------------CCceeEEE-ecCCChhhHHHHHHHhCcceeeeeccccccCcccccCCCCCCcccccCccccC
Q psy8225         320 DT----------------QHSVKMMI-GNGLRPQVWEPFQKRFGLDRICEFYGATEGNANLMNADGKVGAVGYIPYIAIP  382 (479)
Q Consensus       320 ~~----------------l~~lr~~~-G~~l~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~g~~~~~~~~  382 (479)
                      ..                -.++|+++ |+  +++....+. ..+. ++..+||+||+..  .+........|.|+|    
T Consensus       738 ~~~~l~d~LVf~kir~~lGGrlr~~isGg--a~~~l~~~l-~~~i-~i~~g~glTE~~~--~~~~~~~~~~G~Plp----  807 (1452)
T PTZ00297        738 RDSSLLRFIFFRATQELLGGCVEKIVLCV--SEESTSFSL-LEHI-SVCYVPCLREVFF--LPSEGVFCVDGTPAP----  807 (1452)
T ss_pred             CCcHHHHHHHHHHHHHHhcCCeEEEEECC--CccccChHH-hCCc-eEEEecceEEeee--ecCCCCcccCCeecC----
Confidence            00                02456555 43  112222211 2244 6778899999542  233322222366555    


Q ss_pred             CCceeeEEeCC-CCCCccccCCCccccccCCCCceEEEEeecCCcccccccccCcchhHHHHHhhhccCCCcEEEcCCee
Q psy8225         383 FYPVGLIKCDP-ETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDIL  461 (479)
Q Consensus       383 ~~~~~~~i~d~-~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g  461 (479)
                        ++++++.+. +.+.             .+..|||+++            |+++++.|.+++       +||+      
T Consensus       808 --gvEvKI~~~~E~~~-------------~~~~GEIlvr------------~~kdpe~T~e~~-------~gW~------  847 (1452)
T PTZ00297        808 --SLQVDLEPFDEPSD-------------GAGIGQLVLA------------KKGEPRRTLPIA-------AQWK------  847 (1452)
T ss_pred             --ceEEEEcccccccC-------------CCCCCeEEEE------------ECCChHHHHHhh-------CcCc------
Confidence              899999763 2111             1235999875            457787777643       5785      


Q ss_pred             EEecCCcEEEecCCCCCC
Q psy8225         462 IKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       462 ~~d~dG~l~~~GR~~d~~  479 (479)
                         +||+|+|.||+||+.
T Consensus       848 ---~dG~L~IidRkKdli  862 (1452)
T PTZ00297        848 ---RDRTLRLLGPPLGIL  862 (1452)
T ss_pred             ---cCCeEEEEeccccce
Confidence               689999999999974

>COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=2e-34  Score=300.65  Aligned_cols=384  Identities=20%  Similarity=0.225  Sum_probs=299.0

Q ss_pred             chhHHHHHHHhhcCCCccccEEE---Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCceeee
Q psy8225          47 TYARPLFVRTIREVPMTGAYKYT---VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAF  122 (479)
Q Consensus        47 ~~l~~~l~~~~~~~p~~~a~~~~---~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~  122 (479)
                      .++.++|...+...|++.|+.+.   +|| ++..+++++|..|.+.|+.++++|+++.+.+++++++++|++++|+.++|
T Consensus       227 ~~i~~~f~~~a~~~p~~~a~~~~~~~lty~el~~~a~~la~~l~~~g~~~~~~V~i~~~rs~~~i~~~l~ilkaG~~yvP  306 (642)
T COG1020         227 LTIHLLFEEQAATTPDAVALVRGGQQLTYAELDARANRLARLLISLGVGPGETVAILADRSLELVVALLAVLKAGAAYVP  306 (642)
T ss_pred             chHHHHHHHHHHhCCCceeEecCCCcccHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCHHHHHHHHHHHhcCCeEec
Confidence            56899999999999999999995   999 99999999999999999999999999999999999999999999999999


Q ss_pred             ecCCcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCCcceEEecCCCCCCCccCCCccccccccCCcCCCCCCcccc
Q psy8225         123 INTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTEDI  202 (479)
Q Consensus       123 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (479)
                      ++|..+.+.+.++++.++++.+++.........    ..+.   +                 ..+..........+.  .
T Consensus       307 ~d~~~P~~r~~~~l~~~~~~~~~~~~~~~~~~~----~~~~---~-----------------~~~~~~~~~~~~~~~--~  360 (642)
T COG1020         307 LDPLYPAERLAYILEDSRPTLLLTQAHLRVDDV----GLPG---L-----------------ALDDALSEIPDTDPI--P  360 (642)
T ss_pred             CCCCChHHHHHHHHhhcCccEEEeccccccccc----cCCc---c-----------------ccccccccCCccCcc--c
Confidence            999999999999999999999999732211100    0000   0                 000100000000000  0


Q ss_pred             cCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcCCCCCCeEEEeccchhhhhhHHHHHHHHhcCceEEecC
Q psy8225         203 KKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRS  282 (479)
Q Consensus       203 ~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G~~~v~~~  282 (479)
                      ....+++.++++|||||||.||||+.+|+++.....+....+.+..+|+++...++.+..+ ...++.++..|+++++.+
T Consensus       361 ~~~~~~~~ayiiytsgstg~Pkgv~~~h~~~~~~~~~~~~~~~~~~~d~~l~~~s~~fD~~-~~~~f~~l~~G~~l~~~~  439 (642)
T COG1020         361 QALLGDALAYIIYTSGSTGQPKGVRIEHRALANLLNDAGARFGLDADDRVLALASLSFDAS-VFEIFGALLEGARLVLAP  439 (642)
T ss_pred             ccCCCCCeEEEEEccCCCCCCCCceecCHHHHHHHHHHHHhcCCCcccEEeecCCcccchh-HHHHHHHHhCCCEEEecC
Confidence            2335578999999999999999999999999987777777788999999999999866655 477889999999999877


Q ss_pred             C---CChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCC--CCCceeEEE--ecCCChhhHHHHHHHhC-cceeeeec
Q psy8225         283 K---FSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPED--TQHSVKMMI--GNGLRPQVWEPFQKRFG-LDRICEFY  354 (479)
Q Consensus       283 ~---~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~--~l~~lr~~~--G~~l~~~~~~~~~~~~~-~~~v~~~Y  354 (479)
                      .   .++..+.+.+.++++|++..+|..+..+.........  ....+|.+.  |+.++.++...+..... ...+.+.|
T Consensus       440 ~~~~~~~~~l~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~~l~~~y  519 (642)
T COG1020         440 ALLQVDPAALLELLEAQGITVLLLVPLLLRLLLLAALAPDLISPCERLRQLLSGGEALPLALVQRLLQLAALARRLLNLY  519 (642)
T ss_pred             ccccCCHHHHHHHHHHcCCEEEEecHHHHHHHHhchhhccccCCcccccEEEEcCCCCCHHHHHHHHHhccccceEeecc
Confidence            4   5788999999999999999999999988876322221  223477765  78899999998887764 23899999


Q ss_pred             cccccCcccccCCCCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCccccccccc
Q psy8225         355 GATEGNANLMNADGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNGYA  434 (479)
Q Consensus       355 G~tE~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~gY~  434 (479)
                      |.||+...+..........+ ..|.+.+..+.++.++| +...          +++.|..||+++.    |. ++..||+
T Consensus       520 gpTe~~~~~~~~~~~~~~~~-~~piG~p~~n~~~~ild-~~~~----------~~p~gv~gel~i~----g~-~~a~gy~  582 (642)
T COG1020         520 GPTEATLDAPSFPISAELES-RVPIGRPVANTQLYILD-QGLR----------PLPLGVPGELYIA----GL-GLALGYL  582 (642)
T ss_pred             CccHHhhheeeEEcccccCC-CCCcceeeCCCeEEEEC-CCCC----------cCCCCCCeeeEEC----Cc-chhhhhc
Confidence            99996554432221111111 23344455588999998 3333          6789999999997    55 8999999


Q ss_pred             CcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         435 DKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       435 ~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                      +.++.+.+.|-.     +++|+|||+++...||.+.++||.|++|
T Consensus       583 ~~p~lt~~~f~~-----~~~y~tgD~~r~~~dg~~e~lgr~D~qv  622 (642)
T COG1020         583 NRPDLTAERFIA-----LRLYRTGDLARPLADGALEYLGRKDSQV  622 (642)
T ss_pred             CChhhhHHHhhh-----ccCccCCCeeeECCCCeEEEecccccee
Confidence            998888766542     1499999999999999999999988865

>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=99.97  E-value=7.7e-30  Score=247.01  Aligned_cols=222  Identities=18%  Similarity=0.162  Sum_probs=173.2

Q ss_pred             CCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcCCCCCCeEEEeccchhhhhhHHHHHHHHhcCceEEe---
Q psy8225         204 KNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVI---  280 (479)
Q Consensus       204 ~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G~~~v~---  280 (479)
                      ...++++++++|||||||.||+|+++|+++..........+  ...++++..+|++|.+|+ ..++.++..|+++++   
T Consensus        31 ~~~~~d~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~--~~~~~~~~~~p~~~~~g~-~~~~~~l~~g~~~v~~~~  107 (358)
T PRK07824         31 EPIDDDVALVVATSGTTGTPKGAMLTAAALTASADATHDRL--GGPGQWLLALPAHHIAGL-QVLVRSVIAGSEPVELDV  107 (358)
T ss_pred             CCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHhcc--CCCCeEEEECChHHHHHH-HHHHHHHHcCCeEEecCc
Confidence            34568899999999999999999999999988776554433  456788999999999997 445677888888776   


Q ss_pred             cCCCChhHHHHHHHHhc--ccEEEEehHHHHHHhcCCCCCCCCCCceeEEE--ecCCChhhHHHHHHHhCcceeeeeccc
Q psy8225         281 RSKFSASNFWKDCIKYN--CTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFYGA  356 (479)
Q Consensus       281 ~~~~~~~~~~~~i~~~~--~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~--G~~l~~~~~~~~~~~~~~~~v~~~YG~  356 (479)
                      ...+++..+++.+++++  .++...+|..+..++..... ...++++|.++  |+++++++.+++.+ ++. ++++.||+
T Consensus       108 ~~~~~~~~~~~~i~~~~~~~~~~~~~p~~l~~~~~~~~~-~~~~~~l~~i~~gG~~l~~~~~~~~~~-~~~-~v~~~YG~  184 (358)
T PRK07824        108 SAGFDPTALPRAVAELGGGRRYTSLVPMQLAKALDDPAA-TAALAELDAVLVGGGPAPAPVLDAAAA-AGI-NVVRTYGM  184 (358)
T ss_pred             CCCcCHHHHHHHHHHhCCCceEEEecHHHHHHHHhCccc-cCCcccceEEEECCCCCCHHHHHHHHh-cCC-cEEecccC
Confidence            34678999999999998  45566788888776665432 23577888876  88999999998875 587 89999999


Q ss_pred             cccCcccccCCCCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCcccccccccCc
Q psy8225         357 TEGNANLMNADGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNGYADK  436 (479)
Q Consensus       357 tE~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~gY~~~  436 (479)
                      ||++..+.       ..|.|++      ++++++.                      .|||+++    |+ .++.||+++
T Consensus       185 TE~~~~~~-------~~G~~~~------g~~v~i~----------------------~Gei~v~----g~-~~~~gY~~~  224 (358)
T PRK07824        185 SETSGGCV-------YDGVPLD------GVRVRVE----------------------DGRIALG----GP-TLAKGYRNP  224 (358)
T ss_pred             CccCCCcC-------cCceeCC------CCEEEec----------------------CCEEEEe----cC-ccccccCCC
Confidence            99875432       2355544      5666652                      2888887    77 899999998


Q ss_pred             chhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         437 KASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       437 ~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                      +..+.  +.     .+|||+|||+|++ ++|++++.||.||++
T Consensus       225 ~~~~~--~~-----~~g~~~TGDl~~~-~~g~l~i~GR~~d~i  259 (358)
T PRK07824        225 VDPDP--FA-----EPGWFRTDDLGAL-DDGVLTVLGRADDAI  259 (358)
T ss_pred             ccccc--cc-----CCCceecccEEEE-eCCEEEEEeccCCeE
Confidence            75432  21     2679999999999 899999999999975

>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family

Probab=99.96  E-value=1.4e-27  Score=230.19  Aligned_cols=204  Identities=19%  Similarity=0.079  Sum_probs=156.8

Q ss_pred             CCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcCCCC--CCeEEEeccchhhhhhHHHHHHHHhcCceEEecCCCC
Q psy8225         208 SDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTS--DDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFS  285 (479)
Q Consensus       208 ~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~--~d~~~~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~  285 (479)
                      +..++++|||||||.||+|++||+++...+......+++..  .+++++.+|++|.+|+.+.++.++..|+++++.+.++
T Consensus        95 ~~~~~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~dr~l~~~Pl~h~~g~~~~~l~~l~~G~~vv~~~~~~  174 (386)
T TIGR02372        95 PTARFTFATSGSTGTPKPVTHSWAALLSEAQAIAKILGERPPPVRRVISCVPAHHLYGFLFSCLLPSRRGLEAKQLAAAP  174 (386)
T ss_pred             CCceEEEECCCCCCCCceeEeeHHHHHHHHHHHHHHhCcCCCCCCeEEEeCCcHHHHHHHHHHHHHHHCCCeEEecCCCC
Confidence            55788999999999999999999999988877776666643  4689999999999998777888999999999988888


Q ss_pred             hhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEE-ecCCChhhHHHHHHHhCcceeeeeccccccCcccc
Q psy8225         286 ASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI-GNGLRPQVWEPFQKRFGLDRICEFYGATEGNANLM  364 (479)
Q Consensus       286 ~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~-G~~l~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~  364 (479)
                      +..+++.+..+  +++.++|++++.|.+..    ..+++++.+. |+++++++++.+++. +...+++.||+||++++..
T Consensus       175 ~~~~l~~i~~~--t~~~~~P~~l~~l~~~~----~~l~slr~i~gGa~l~~~l~~~~~~~-g~~~v~~~YG~TEt~~i~~  247 (386)
T TIGR02372       175 ASGIMRHARPG--DLIVGTPFIWEQLADLD----YRLPGVVGVSSGAPSTAATWRCLLAA-GLARLLEVYGATETGGIGL  247 (386)
T ss_pred             hHHHHHhhccC--CEEEECcHHHHHHHhhC----cCCCcceeEecCCCCCHHHHHHHHHh-cccchhheecccccccccc
Confidence            88888877643  78999999999987653    2456788766 899999999999875 5437999999999987554


Q ss_pred             cCCCCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCcccccccccCcchhHHHHH
Q psy8225         365 NADGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNGYADKKASEKKIL  444 (479)
Q Consensus       365 ~~~~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~gY~~~~~~~~~~~  444 (479)
                      ..  .++..+.+.|      ++++.+ +  +                   |.   +   .|+                  
T Consensus       248 ~~--~~~~~~~~~p------~~~~~~-~--~-------------------~~---~---~g~------------------  273 (386)
T TIGR02372       248 RE--APDDPFRLLP------DLACFA-D--T-------------------LS---S---AGL------------------  273 (386)
T ss_pred             cc--CCCCCcccCC------CccccC-C--C-------------------cc---C---CCc------------------
Confidence            32  1233344333      333211 0  0                   00   0   011                  


Q ss_pred             hhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         445 RNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       445 ~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                             ..|++|||+|++|++|+|+|+||+||++
T Consensus       274 -------~~~~~tgD~g~~d~~G~l~i~GR~dd~I  301 (386)
T TIGR02372       274 -------ARRLDLQDRLAWDKDGGFTILGRKDEIL  301 (386)
T ss_pred             -------cceeecCceEEEcCCCcEEEecccCCEE
Confidence                   2478999999999999999999999974

Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.

>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase

Probab=99.95  E-value=3.1e-27  Score=233.42  Aligned_cols=234  Identities=18%  Similarity=0.082  Sum_probs=172.2

Q ss_pred             CCCCcEEEEEccCCCCCcceEEeehHHHHHHhhh---hhhhcCCCCCCeEEEeccchhhhhhHHHHHHHHhcCceEEecC
Q psy8225         206 KPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAIS---GRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRS  282 (479)
Q Consensus       206 ~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~---~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G~~~v~~~  282 (479)
                      ..++.+.+++||||||.||++.++|.++......   ....+++.++|++++..+..+..+.....+.....|++++..+
T Consensus        73 ~~~~~~~~~~TSGTTG~Pk~v~~t~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  152 (422)
T TIGR02155        73 PREQVVRIHASSGTTGKPTVVGYTQNDIDTWSSVVARSIRAAGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPIS  152 (422)
T ss_pred             ChHHcEEEEECCCCCCCCeEeccCHHHHHHHHHHHHHHHHHcCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEecC
Confidence            4457788899999999999999999988654332   2334578899999887766544443344556777899998877


Q ss_pred             CCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCC--CCCceeEEE--ecCCChhhHHHHHHHhCcceeeeeccccc
Q psy8225         283 KFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPED--TQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFYGATE  358 (479)
Q Consensus       283 ~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~--~l~~lr~~~--G~~l~~~~~~~~~~~~~~~~v~~~YG~tE  358 (479)
                      ..++..+++.|++++++++.++|+++..|++.......  ...++|.++  |+++++++.+.+++.||+ ++++.||+||
T Consensus       153 ~~~~~~~~~~i~~~~~t~l~~~Ps~l~~L~~~~~~~~~~~~~~~lr~i~~~ge~l~~~~~~~i~~~~g~-~v~~~YG~tE  231 (422)
T TIGR02155       153 GGQTEKQVQLIQDFKPDIIMVTPSYMLNLLEELKRMGIDPAQTSLQVGIFGAEPWTNAMRKEIEARLGM-KATDIYGLSE  231 (422)
T ss_pred             CCCHHHHHHHHHHHCCCEEEEcHHHHHHHHHHHHHcCCCcccCceEEEEEeCCcCCHHHHHHHHHHhCC-ceEecccchh
Confidence            77789999999999999999999999988765433222  235788766  899999999999999998 8999999999


Q ss_pred             cCc-cc-ccCCCCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCcccccccccCc
Q psy8225         359 GNA-NL-MNADGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNGYADK  436 (479)
Q Consensus       359 ~~~-~~-~~~~~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~gY~~~  436 (479)
                      +++ .+ ..+..  ...|.+++    .+.+.+.++|+++++          ++++|+.|||+++    +.   .      
T Consensus       232 ~~~~~~~~~~~~--~~~g~~~~----~~~~~~eivd~~~g~----------~v~~Ge~Gelvvt----~~---~------  282 (422)
T TIGR02155       232 VIGPGVAMECVE--TQDGLHIW----EDHFYPEIIDPHTGE----------VLPDGEEGELVFT----TL---T------  282 (422)
T ss_pred             hcCCceeecccc--cCCCceEe----cCeeEEEEECCCCCC----------CCCCCCeeEEEEe----cC---C------
Confidence            852 22 22211  11233221    113566788877776          6789999999987    22   1      


Q ss_pred             chhHHHHHhhhccCCCcEEEcCCeeEEecC-C-----cEEEecCCCCCC
Q psy8225         437 KASEKKILRNVYSHGDAAFNTGDILIKDKF-Q-----YFYFKDRTGDAC  479 (479)
Q Consensus       437 ~~~~~~~~~~~~~~~~g~~~TGD~g~~d~d-G-----~l~~~GR~~d~~  479 (479)
                          +..+      ..+||+|||+|+++++ |     .++|.||.||++
T Consensus       283 ----~~~~------p~~ry~TGDl~~~~~~~Gr~~~~~~~i~GR~~d~i  321 (422)
T TIGR02155       283 ----KEAL------PVIRYRTRDLTRLLPGTARTMRRMDRITGRSDDML  321 (422)
T ss_pred             ----cccc------ceeeEEcCcEEEEECCCCCcccccccccCccCCeE
Confidence                1111      1569999999999876 5     578999999984

Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.

>TIGR03089 conserved hypothetical protein TIGR03089

Probab=99.95  E-value=1.2e-26  Score=207.22  Aligned_cols=212  Identities=13%  Similarity=0.101  Sum_probs=160.0

Q ss_pred             HHHHhhcCCCccccEEE---------Eeh-hhHHHHHHHHHHHHH-cCCCCCCEEEEEcCCchHHHHHHHHhhhcCceee
Q psy8225          53 FVRTIREVPMTGAYKYT---------VTF-QVEDHSNRIANFFKS-KGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAA  121 (479)
Q Consensus        53 l~~~~~~~p~~~a~~~~---------~Ty-~l~~~~~~la~~L~~-~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v  121 (479)
                      |...++.+|+++|+++.         +|| |+.++++++|+.|++ .|+++||+|+|+++|+++++++++||+++|++++
T Consensus         2 ~~~~~~~~p~~~al~~~~~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~Gv~~GdrV~i~~~n~~~~~~~~~a~~~~G~v~v   81 (227)
T TIGR03089         2 LSPLLAADPASPRLTFYDDATGERVELSAATLANWVAKTANLLQDELDAEPGSRVALDLPAHWQTAVWLLAAWSTGVEVV   81 (227)
T ss_pred             hhhhhhhCCCCcEEEEEcCCCCeeEEEEHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEE
Confidence            56678889999999741         899 999999999999998 6999999999999999999999999999999999


Q ss_pred             eecCCcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCCcceEEecCC--CCC-CCccCCCccccccccCCcCCCCCC
Q psy8225         122 FINTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGT--RRK-PQAKVLPSTTLLDEELPEVSAKSP  198 (479)
Q Consensus       122 ~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~  198 (479)
                      |++             .+++++++++.+..+.+.     .+.. ++.+..  ... ...........+.+.+........
T Consensus        82 p~n-------------~s~a~~~v~~~~~~~~~~-----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (227)
T TIGR03089        82 LAG-------------DPDADVVVTGPDRLAAAA-----GSGE-VVALSLDPLGRRVAGELPPGVIDFAPEVRVHGDQFA  142 (227)
T ss_pred             eCC-------------CCCCCEEEeCcchhhhcc-----cCCc-eEEEeccccccCCCCCCCCcccchhhhhhccCCCCC
Confidence            995             678999999887665532     1111 222110  000 000001122344444432211111


Q ss_pred             cccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcCCCCCCeEEEeccchhhhhhHHHHHHHHhcCceE
Q psy8225         199 TEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTV  278 (479)
Q Consensus       199 ~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G~~~  278 (479)
                      +.  ....+++++.++||||+         +|.+++.+.    ...+++++|+++ .+|++|.+|+...++.++..|+++
T Consensus       143 ~~--~~~~~~D~a~l~yTsg~---------~~~~~~~~~----~~~~l~~~D~~l-~~Pl~H~~gl~~~~~~~l~~G~t~  206 (227)
T TIGR03089       143 PY--EPPDATAPALVAGGGEW---------TGAELVAAA----RAAGLPPGDRVL-VLAWTDLEDFLATLLAPLAAGGSL  206 (227)
T ss_pred             CC--CCCCCCcceeeeccccc---------cHHHHHHHH----hhcCCCCCCeEE-ecCCCchHHHHHHHHHHhccCceE
Confidence            11  13356899999999986         666665544    456788999999 999999999988899999999999


Q ss_pred             EecCCCChhHHHHHHHHhccc
Q psy8225         279 VIRSKFSASNFWKDCIKYNCT  299 (479)
Q Consensus       279 v~~~~~~~~~~~~~i~~~~~t  299 (479)
                      ++.++|++..+++.|+++|||
T Consensus       207 v~~~rFd~~~~l~~i~~~~vT  227 (227)
T TIGR03089       207 VLVTHPDPARLDQIAETERVT  227 (227)
T ss_pred             EEecCCCHHHHHHHHHhhcCC
Confidence            999999999999999999987

This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501.

>KOG3628|consensus

Probab=99.94  E-value=4.5e-24  Score=213.14  Aligned_cols=408  Identities=15%  Similarity=0.132  Sum_probs=272.7

Q ss_pred             chhHHHHHHHhhcCCCccccEEE---------Eeh-hhHHHHHHHHHHHHHc-CCCCCCEEEEEcCCchHHHHHHHHhhh
Q psy8225          47 TYARPLFVRTIREVPMTGAYKYT---------VTF-QVEDHSNRIANFFKSK-GLQRGDAVALFMEGQPEYVCMWLGLSK  115 (479)
Q Consensus        47 ~~l~~~l~~~~~~~p~~~a~~~~---------~Ty-~l~~~~~~la~~L~~~-gi~~gd~V~i~~~n~~e~~~~~lA~~~  115 (479)
                      .++.|+|++.+.++|+.+|+...         +|| +|..++.+++..|..+ -+++||.|++++++++|++++++||+.
T Consensus       770 ~~ile~Lq~R~a~tp~~~a~~~~n~~~~~~~~~Tw~~f~krva~i~~~l~~k~~lk~Gd~V~Lmy~~sie~vaa~~~Cly  849 (1363)
T KOG3628|consen  770 LTILEILQWRAAKTPDHIAFTTLNARGATKKTLTWAQFHKRVARIAEYLQDKGHLKAGDHVVLMYPPSIEFVAAIYACLY  849 (1363)
T ss_pred             HHHHHHHHHHhhcCCCceEEEEeccCCcccceeEHHHHHHHHHHHHHHHHhcccCCCCCeEEEEcCChHHHHHHHHHHHh
Confidence            77999999999999999999987         999 9999999999999987 589999999999999999999999999


Q ss_pred             cCceeeeecCCc------chHHHHHHHHhccceEEEeChhhHHHHHHh--hccCC--cceEEecCCCCCCCccCCCcccc
Q psy8225         116 IGVVAAFINTNQ------RQHILIHSIKVAECKAIIYGAELSEALTEV--KDSIP--GISLYAAGTRRKPQAKVLPSTTL  185 (479)
Q Consensus       116 ~G~~~v~l~~~~------~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  185 (479)
                      +|.+++|+.|.-      ..+.+..+++.+++++|+++++....++.-  .....  .+..+..-+..      +..   
T Consensus       850 ~GliPIpv~p~~~s~l~~~l~~~~~ii~~~kv~ailv~~~v~~lLrsr~~s~~~~~s~~p~i~~~~~~------~~t---  920 (1363)
T KOG3628|consen  850 LGLIPIPVPPPHASNLIEDLPTFRMIIKVYKVAAILVDQKVLKLLRSREASAHVDQSAIPLILVLPKL------PET---  920 (1363)
T ss_pred             cCeeeeccCCccHHhhhhhhHHHHHHHHHhhhheEEecHHHHHHHhhhhHHHHhhhhcchhhhccccc------chh---
Confidence            999999997753      345788899999999999998765544332  11111  00000000000      000   


Q ss_pred             ccccCCcCCCCCCcccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcCCCCCCeEEEeccchhhhhhH
Q psy8225         186 LDEELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGL  265 (479)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~  265 (479)
                      +........+............+.+|++-+.--++|.--++.++|.++++.++.......+.+..-++...+.+...|+.
T Consensus       921 ~~k~~~~~~k~~~~~~~g~~~k~~~a~v~~~~~~dg~l~~~~msHsslla~Ck~iKe~~~l~~~rpl~~~~~~~sGlgf~ 1000 (1363)
T KOG3628|consen  921 IRKRKKNIKKLNTPTPPGLNNKETPALVWFNVSTDGMLIGVKMSHSSLLAFCKIIKETCQLYKSRPLLGCSSPYSGLGFN 1000 (1363)
T ss_pred             hhhhhhhhhccCCCCCccccCCCceEEEEEEecCCcceeeeeccHHHHHHHHHHHHHHHccccCCceEEEecCccchhHH
Confidence            00000000011111111233456788888888899999999999999999999998888888888888888888888888


Q ss_pred             HHHHHHHhcCceEEecCC----CChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCce------eEEE--ecCC
Q psy8225         266 LGIGQCLLGGSTVVIRSK----FSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSV------KMMI--GNGL  333 (479)
Q Consensus       266 ~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~l------r~~~--G~~l  333 (479)
                      ...+...+.|.+.++.++    -++..++..+++|++.-++.+=..+..+.+.......+++..      .++.  -+..
T Consensus      1001 ~wcLlgVysGh~T~Li~p~~l~nnpsLll~~i~~~kvkDt~~~~~tln~c~~~l~t~~enl~~~gnn~s~s~vv~~~~RP 1080 (1363)
T KOG3628|consen 1001 HWCLLGVYSGHPTLLISPMDLENNPSLLLQIISQYKVKDTYPTYSTLNLCQKGLETSVENLSKRGNNTSSSIVVPAEERP 1080 (1363)
T ss_pred             HHHHHHHHcCCceeecCHHHhhcCHHHHHHHHhcccccccchhHHHHHHHHhccccccchhhhhhcccccceeeecCCcc
Confidence            888889999999777664    378899999999999988887777777766544433332221      1222  3445


Q ss_pred             ChhhHHHHHHHhCc-----ceeeeeccccccCccccc-----------CC------CCCCc--ccccC--c---cccCCC
Q psy8225         334 RPQVWEPFQKRFGL-----DRICEFYGATEGNANLMN-----------AD------GKVGA--VGYIP--Y---IAIPFY  384 (479)
Q Consensus       334 ~~~~~~~~~~~~~~-----~~v~~~YG~tE~~~~~~~-----------~~------~~~~~--~g~~~--~---~~~~~~  384 (479)
                      ...+++-|.+.|..     ..+--.|++----.++.+           .+      .....  +|+|-  +   .+.-.+
T Consensus      1081 r~ali~sf~klfa~igLsp~avStsys~r~Np~Ic~r~~sg~~Pt~~y~D~raLR~grV~~ve~~ap~~l~L~dSG~~~~ 1160 (1363)
T KOG3628|consen 1081 RIALIASFKKLFAAIGLSPRAVSTSYSSRVNPFICLRSYSGPEPTTVYLDARALREGRVRLVEVGAPHSLLLYDSGKLPV 1160 (1363)
T ss_pred             HHHHHHHHHHHHHHcCCChhhhcccccccCChHhhhccccCCCCcceeechhhhhccceeeeecCCCCccccccCCcccc
Confidence            56666666665521     123333433221111111           00      00011  12211  0   011122


Q ss_pred             ceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCcccccccccCc-chhHHHHHhhhcc----CCCcEEEcCC
Q psy8225         385 PVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNGYADK-KASEKKILRNVYS----HGDAAFNTGD  459 (479)
Q Consensus       385 ~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~gY~~~-~~~~~~~~~~~~~----~~~g~~~TGD  459 (479)
                      .+++.|++|++-.          +|.+|+.||||+.    +. +-+.+|++. ++.....|.....    .+.+|-||||
T Consensus      1161 ~~~i~IvnPEtk~----------pc~dge~GEIW~~----S~-hnA~~~~~~~d~~~~~~fn~rl~~g~~~~~sy~RTG~ 1225 (1363)
T KOG3628|consen 1161 YTDIAIVNPETKG----------PCRDGELGEIWVN----SA-HNASCSFTIGDELRSNHFNARLSSGDLLGKSYARTGD 1225 (1363)
T ss_pred             cceeEEeCCcccc----------ccccCCcceEEec----cc-cccccccccCchhhhhhhhhhccccccccccceeeee
Confidence            6899999999876          8899999999998    44 566667643 1122223332332    2457999999


Q ss_pred             eeEEec------C----CcEEEecCCCCC
Q psy8225         460 ILIKDK------F----QYFYFKDRTGDA  478 (479)
Q Consensus       460 ~g~~d~------d----G~l~~~GR~~d~  478 (479)
                      +|++..      +    .-||++|-.++.
T Consensus      1226 LGFl~~t~~t~~~~e~~~~LyVlG~i~Et 1254 (1363)
T KOG3628|consen 1226 LGFLRRTSLTDANVERHDLLYVLGAIDET 1254 (1363)
T ss_pred             eeeeeeeecccccceeeeeEEEeecccce
Confidence            998832      2    357888876653

>TIGR03335 F390_ftsA coenzyme F390 synthetase

Probab=99.91  E-value=4.4e-23  Score=204.01  Aligned_cols=235  Identities=16%  Similarity=0.083  Sum_probs=165.6

Q ss_pred             CCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhh---hcCCCCCCeEEEeccchhhhhhHHHHHHHHhcCceEEec
Q psy8225         205 NKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRY---QTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIR  281 (479)
Q Consensus       205 ~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~---~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G~~~v~~  281 (479)
                      ...++++.+.+||||||.||+|.+||.++.........   ..++.++|+++...|..+..|.....++++..|++++..
T Consensus        83 ~~~~~i~~i~~TSGTTG~Pk~v~~T~~dl~~~~~~~~r~~~~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~  162 (445)
T TIGR03335        83 ADWKDIYTIHETSGTSGTPKSFFLTWDDWKRYAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPE  162 (445)
T ss_pred             CCHHHeEEEEeCCCCCCCcceeeecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcC
Confidence            34567888999999999999999999998765544333   347889999999988887766544455667788887654


Q ss_pred             CCCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCC--CCCceeEEE--ecCCChhhHHHHHHHhCcceeeeecccc
Q psy8225         282 SKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPED--TQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFYGAT  357 (479)
Q Consensus       282 ~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~--~l~~lr~~~--G~~l~~~~~~~~~~~~~~~~v~~~YG~t  357 (479)
                      ..  ....++.|.+++++.+..+|+.+..|++.......  ...++|.++  |+++++++.+++.+.||+ ++++.||+|
T Consensus       163 ~~--~~~~~~~i~~~~~t~l~~~ps~ll~La~~~~~~g~~~~~~~lr~ii~gGE~l~~~~r~~ie~~~g~-~v~~~YG~T  239 (445)
T TIGR03335       163 GK--CTFPIRIIESYRPTGIVASVFKLLRLARRMKAEGIDPAESSIRRLVVGGESFADESRNYVEELWGC-EVYNTYGST  239 (445)
T ss_pred             Cc--hhHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCcceEEEEcCCCCCHHHHHHHHHHhCC-cEEecCChh
Confidence            32  34668999999999999999988777654332221  236788766  889999999999999998 999999999


Q ss_pred             ccCcccccCCCCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCcccccccccCcc
Q psy8225         358 EGNANLMNADGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNGYADKK  437 (479)
Q Consensus       358 E~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~gY~~~~  437 (479)
                      |++.. ..+..   ..|..++    .+.+.+.|+|++++.          ++++|+.|||+++       .+.....  .
T Consensus       240 E~~~~-~~c~~---~~g~h~~----~d~~~vEIvDp~~~~----------~vp~Ge~GELvvT-------~L~~~~~--r  292 (445)
T TIGR03335       240 EGTMC-GECQA---VAGLHVP----EDLVHLDVYDPRHQR----------FLPDGECGRIVLT-------TLLKPGE--R  292 (445)
T ss_pred             hhhhe-EEecC---CCCcccc----CCceEEEEEcCCCCC----------CCcCCCceEEEEE-------ecCCCCc--c
Confidence            98632 22221   2243322    113678889988776          5689999999997       2221000  0


Q ss_pred             hhHHHHHhhhccCCCcEEEcCCeeEEe--cC---C----cEEEecCCCCCC
Q psy8225         438 ASEKKILRNVYSHGDAAFNTGDILIKD--KF---Q----YFYFKDRTGDAC  479 (479)
Q Consensus       438 ~~~~~~~~~~~~~~~g~~~TGD~g~~d--~d---G----~l~~~GR~~d~~  479 (479)
                       .....+         -|+|||++++.  +.   |    ++...||.|||+
T Consensus       293 -~~~Pli---------RYrtgD~~~~~~~~~C~CGr~~~r~~~~gR~dd~~  333 (445)
T TIGR03335       293 -CGSLLI---------NYDTEDTTVVISRDRCPCGRTHMRILNPEREAETI  333 (445)
T ss_pred             -CCceEE---------EeecCceEEEecCCCCCCCCCcceeCCCcccCceE
Confidence             001122         38999999873  22   3    244579999984

This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]

Probab=99.81  E-value=7e-19  Score=165.63  Aligned_cols=235  Identities=21%  Similarity=0.128  Sum_probs=170.9

Q ss_pred             CCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhh---hcCCCCCCeEEEeccchhhhhhHHHHHHHHhcCceEEe
Q psy8225         204 KNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRY---QTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVI  280 (479)
Q Consensus       204 ~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~---~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G~~~v~  280 (479)
                      ....++...|--||||||+|+-+.+++..+...+..+..   ..+...+|++....-.....|....-.++-..|++++-
T Consensus        86 ~~~~~~i~~ihaSSGTTGkPt~~~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip  165 (438)
T COG1541          86 AVPKEEIVRIHASSGTTGKPTVFGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIP  165 (438)
T ss_pred             cccccceEEEEccCCCCCCceeeecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEc
Confidence            345566666888999999999999999887665554443   44678888876665533333322333455557888777


Q ss_pred             cCCCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCC--CCCCceeEEE--ecCCChhhHHHHHHHhCcceeeeeccc
Q psy8225         281 RSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPE--DTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFYGA  356 (479)
Q Consensus       281 ~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~--~~l~~lr~~~--G~~l~~~~~~~~~~~~~~~~v~~~YG~  356 (479)
                      ...-+...-++++.+++++++.++|+.+..|++..+...  ..-.++|.++  +|+++++.++.+.+.||+ ..++.||.
T Consensus       166 ~~~g~~~~~~~l~~df~~tvI~~tps~~l~lae~~~~~G~~~~~~~lk~~i~gaE~~see~R~~ie~~~g~-~~~diYGl  244 (438)
T COG1541         166 ISGGNTERQLELMKDFKPTVIAATPSYLLYLAEEAEEEGIDPDKLSLKKGIFGAEPWSEEMRKVIENRFGC-KAFDIYGL  244 (438)
T ss_pred             cCCccHHHHHHHHHhcCCcEEEEChHHHHHHHHHHHHcCCChhhcceeEEEEecccCCHHHHHHHHHHhCC-ceeecccc
Confidence            666688899999999999999999999999988876653  3346777766  599999999999999999 89999999


Q ss_pred             cccCcc-cccCCCCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCcccccccccC
Q psy8225         357 TEGNAN-LMNADGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNGYAD  435 (479)
Q Consensus       357 tE~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~gY~~  435 (479)
                      ||..+. ...+....   |..+    ..+...+.++||++|+          .+++|+.|||++.       .+.     
T Consensus       245 tE~~g~g~~eC~~~~---glhi----~eD~~~~Ei~dP~t~e----------~l~dge~GelV~T-------~L~-----  295 (438)
T COG1541         245 TEGFGPGAGECTERN---GLHI----WEDHFIFEIVDPETGE----------QLPDGERGELVIT-------TLT-----  295 (438)
T ss_pred             ccccCCccccccccc---CCCc----chhhceeeeecCCcCc----------cCCCCCeeEEEEE-------ecc-----
Confidence            998655 33333322   3222    1225778889999999          5688999999987       222     


Q ss_pred             cchhHHHHHhhhccCCCcEEEcCCeeEEecC----C-----cEEEecCCCCCC
Q psy8225         436 KKASEKKILRNVYSHGDAAFNTGDILIKDKF----Q-----YFYFKDRTGDAC  479 (479)
Q Consensus       436 ~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~d----G-----~l~~~GR~~d~~  479 (479)
                      +  ....++         -|+|||+..+.++    |     .-.|.||.|||.
T Consensus       296 ~--~~~PlI---------RYrtgDit~i~~~~C~cGr~~~ri~~I~GR~dD~l  337 (438)
T COG1541         296 K--EGMPLI---------RYRTGDITVILSDPCGCGRTHRRIERIEGRSDDML  337 (438)
T ss_pred             c--cCcceE---------EEEcCCeeEecccCCCCCCccccccccCcccccEE
Confidence            1  112233         3999999999763    3     356899999984

>KOG1178|consensus

Probab=99.80  E-value=1.1e-18  Score=180.31  Aligned_cols=299  Identities=18%  Similarity=0.189  Sum_probs=194.6

Q ss_pred             chhHHHHHHHhhcCCCccccEEE-----------Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhh
Q psy8225          47 TYARPLFVRTIREVPMTGAYKYT-----------VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLS  114 (479)
Q Consensus        47 ~~l~~~l~~~~~~~p~~~a~~~~-----------~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~  114 (479)
                      -++...+.+.+...|...+..+.           +|| +....++.+++.|...|...++.|++++..+.++++..++++
T Consensus        36 g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~i~~~t~r~~~~~~n~~~q~l~~~~~~~~~~v~i~~~~~~d~~v~v~~~~  115 (1032)
T KOG1178|consen   36 GTLEDSFRRELAEAPENTGHVIIPTASESGIIDSFTYRLIRLLSNIIAQFLVSLGSLRGTTVAIYMLPSVDLVVSVFAVL  115 (1032)
T ss_pred             cchhhHHHHHHhhcccCCCceEeecccccccccchhhhhhhcccchhHHHhhhcccccCceEEEeccCcCCeeeeeeehh
Confidence            45677899999999999888876           899 999999999999999999999999999999999999999999


Q ss_pred             hcCceeeeecCCcchHHHHHHHHhccceEEEeChhhHHH---HHHhhc-cCCcceEEecCCCCCCCccCCCccccccccC
Q psy8225         115 KIGVVAAFINTNQRQHILIHSIKVAECKAIIYGAELSEA---LTEVKD-SIPGISLYAAGTRRKPQAKVLPSTTLLDEEL  190 (479)
Q Consensus       115 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (479)
                      ++|..+.+++|.++..++...+.+......-...+....   +..... ..+...+.             .....|..+.
T Consensus       116 ~~g~~~~~idp~~~~~e~~~~~~~ia~~~~s~~~~i~~~l~i~~~~~~~~~~~~sv~-------------~~~~~f~~~~  182 (1032)
T KOG1178|consen  116 AAGLTFLPIDPSWPNSELAGYLMRIAHFLTSVELEIVRRLNIIDILLNSLFPKLSVE-------------TIADSFQMVL  182 (1032)
T ss_pred             hcceEEEEecCCCcccccchHHHhhhhhheeccceehhhhhhHHHHhhccccccchh-------------hccchhhhhh
Confidence            999999999999992222222222211111111111100   000000 00110000             0011111111


Q ss_pred             CcCCCCCCcccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcCCCCCCeEEEeccc-hhhhhhHHHHH
Q psy8225         191 PEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPL-YHTAGGLLGIG  269 (479)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~pl-~h~~g~~~~~~  269 (479)
                      .....    ....-.-.+..+.+.||||+||.||+|.-+|..+.....+....+.+...+++-....+ +|..  +..+.
T Consensus       183 ~~~~~----r~~~~~~~ds~~~l~~tSgs~G~pk~v~~~~~sl~~~fdw~~~~f~~t~s~~~~~~~~~~~~d~--i~~~~  256 (1032)
T KOG1178|consen  183 HNEDT----REIRVGGNDSTALLSFTSGSTGVPKGVAGTHFSLANAFDWMFTTFPPTGSDRFTFKTSVYFDDT--IQKFI  256 (1032)
T ss_pred             ccCCC----cceeeecccccceEeecccccccccccchhHHHHHhhhhhccccCCcCccchhhhhheeecccc--hHHHH
Confidence            11111    11133456678899999999999999999999999998888888888777765222222 2221  22233


Q ss_pred             -HHHhcCceEEecCCC---ChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCC----------CCC---CCceeEEE--e
Q psy8225         270 -QCLLGGSTVVIRSKF---SASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKP----------EDT---QHSVKMMI--G  330 (479)
Q Consensus       270 -~~l~~G~~~v~~~~~---~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~----------~~~---l~~lr~~~--G  330 (479)
                       ..+..|+.+..+...   .+..+.+.+++|+++..+.+|++.+.++......          ...   .+.|+...  |
T Consensus       257 ~~~L~~~~~l~~p~~~~~~~~~~l~~~le~y~i~~~~~~~a~~~~l~~~~~~~~~~l~~~~~~~dl~~~~~~Lkl~~~~~  336 (1032)
T KOG1178|consen  257 GALLFNGNNLLVPTATIKDTPGQLASTLERYGITVSHLLPAMCQLLLAILTTSLPLLEHAFSLSDLLTKRSCLKLVVLGG  336 (1032)
T ss_pred             hhHhhcCceeecccccCccchhhHHHHHHhhhheeeeechhhhhhhhhhcCcchhhhhhhhhcccccccchhheeeeecC
Confidence             344555555555432   3789999999999999999999988877665431          111   23566655  7


Q ss_pred             cCCChhhHHHHHHHhCcceeeeeccccccCcccc
Q psy8225         331 NGLRPQVWEPFQKRFGLDRICEFYGATEGNANLM  364 (479)
Q Consensus       331 ~~l~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~  364 (479)
                      ++...++...+...+...-...-|+.++..+...
T Consensus       337 ep~~v~l~~s~~~~~~~~~~~~~y~s~~~~~~~s  370 (1032)
T KOG1178|consen  337 EPLLVSLYTSTFDLLAEIFFGLPYLSTDPTGLVS  370 (1032)
T ss_pred             CccchhhhhhhhhcccceeeeecccCCCCcccee
Confidence            8888888776666554323334488888766554

>KOG3628|consensus

Probab=99.66  E-value=3.1e-15  Score=150.68  Aligned_cols=387  Identities=15%  Similarity=0.119  Sum_probs=250.3

Q ss_pred             hHHHHHHHhhcCCCccccEEE--------Eeh-hhHHHHHHHHH-HHHHcCCCCCCEEEEEcCCc--hHHHHHHHHhhhc
Q psy8225          49 ARPLFVRTIREVPMTGAYKYT--------VTF-QVEDHSNRIAN-FFKSKGLQRGDAVALFMEGQ--PEYVCMWLGLSKI  116 (479)
Q Consensus        49 l~~~l~~~~~~~p~~~a~~~~--------~Ty-~l~~~~~~la~-~L~~~gi~~gd~V~i~~~n~--~e~~~~~lA~~~~  116 (479)
                      +..++++.-.+++...|.++.        +|| .+..++.++|+ .|.+.|..++|+|.++...+  .|+++..++|...
T Consensus        96 ~~avl~~~~nhs~~~ta~i~id~kgk~~~~twdkl~~rA~k~a~~~l~ksgl~~~~~vvL~Y~~~e~ie~~isl~gc~l~  175 (1363)
T KOG3628|consen   96 IIAVLRYRRNHSATSTAHICIDKKGKATSITWDKLLNRAEKVAHVELNKSGLKPGDRVVLYYRKCEAIEFLISLFGCFLL  175 (1363)
T ss_pred             hHHHHHhhccCCCCCceEEEEcCCCceeeeeHHHHHHHHHhhccHHhhccCCCCCcEEEEEEEhhhhhHHhhhhcccccc
Confidence            456677777788888998886        999 99999999999 56666999999999999865  8999999999999


Q ss_pred             CceeeeecCCcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCC---cceEEecCCCCCCCccCCCcccccccc-CCc
Q psy8225         117 GVVAAFINTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIP---GISLYAAGTRRKPQAKVLPSTTLLDEE-LPE  192 (479)
Q Consensus       117 G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  192 (479)
                      |.+++|+++..+.+++..+++....+++++.........+......   .++.+              +...+.-. ..+
T Consensus       176 g~~~vp~~e~~s~~el~~i~~~~~~~~~l~t~a~~r~~~~~~~~~s~~k~v~~w--------------~t~~~k~~~~~~  241 (1363)
T KOG3628|consen  176 GIVAVPLSELSSSEELKDIVNPTPERVALTTEAGERAFINDNSPVSLAKAVAWW--------------KTNDFKGNYTKD  241 (1363)
T ss_pred             ceeeccchhhhhhhhhhcccCCCccceEeehhhhHHHhhhccCcccHHHHHHhh--------------hcccccceeehh
Confidence            9999999999999999999999999999987654443333221000   01010              01111100 000


Q ss_pred             CCCCCCcccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhh--------------------hcCCCCCCeE
Q psy8225         193 VSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRY--------------------QTGLTSDDVV  252 (479)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~--------------------~~~~~~~d~~  252 (479)
                      ....      +..... ..+|-||++++|.--|++.+|. ++...+.+..                    .+....++.+
T Consensus       242 k~~~------P~~~~~-~~~i~~t~s~l~~~~g~V~~~~-~~~q~r~~~~~~nt~Pa~~~~~~~~~~~~~v~~~~~~~~~  313 (1363)
T KOG3628|consen  242 KIKK------PRMQLP-YGYIEFTRSPLGNLIGVVYKHK-FLPQMRVLTSIPNTNPARFAAAFYGCLHAHVFPVPSEDVL  313 (1363)
T ss_pred             hccC------Cceeee-eEEEEEeccchhceeeeEeecc-cccchhhhhhccCcChHHHHHhhhcchhhhccccCcccce
Confidence            0111      222223 7888899999999999999997 4433322211                    1223556677


Q ss_pred             EEeccchhhhhhHHHHHHHHhcCceEEecCC---CChhHHHHHHHHhcccEEEEehHHHHHHh----cCCCC-------C
Q psy8225         253 YTTLPLYHTAGGLLGIGQCLLGGSTVVIRSK---FSASNFWKDCIKYNCTVAQYIGEMCRYLL----AVPEK-------P  318 (479)
Q Consensus       253 ~~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~---~~~~~~~~~i~~~~~t~~~~~p~~l~~l~----~~~~~-------~  318 (479)
                      +..+...-..|++++++.+++.|.|.+..++   ..|..+...+.+++++++..--..++...    +.+..       .
T Consensus       314 l~~~~~s~~lGlilGV~~alfsg~c~i~~p~~~l~~pG~~~~l~~k~R~~~~ltd~~~Lkq~~~ny~~~p~a~~s~~k~~  393 (1363)
T KOG3628|consen  314 LTNLDPSQQLGLILGVLVALFSGYCTIGCPKEVLKPPGLIANLITKYRATWSLTDYAGLKQPVYNYQEDPKATLSFKKYK  393 (1363)
T ss_pred             eeccCcccccchhhhhhhhhhcCceeecCchhhcCCCcchhhhhccceeEEEeecccccCcccccccCCcccccchhhcc
Confidence            7777778888999999999999999998886   57788899999999998765433333321    11111       1


Q ss_pred             CCCCCceeEEE--ecCCChhhHH----HHHHHhCcc-----------------eeeeeccccccCcccccCCC-------
Q psy8225         319 EDTQHSVKMMI--GNGLRPQVWE----PFQKRFGLD-----------------RICEFYGATEGNANLMNADG-------  368 (479)
Q Consensus       319 ~~~l~~lr~~~--G~~l~~~~~~----~~~~~~~~~-----------------~v~~~YG~tE~~~~~~~~~~-------  368 (479)
                      ..+++++|.++  ...+..+..+    +|.+-+|..                 -.+..=+++|.+...-+.+.       
T Consensus       394 t~d~sslk~C~Vtc~~vd~~~~~ivs~~wlk~lg~~~~~~~~~p~l~ll~hGgi~is~k~~~~~~~~~~r~p~~~~~~~~  473 (1363)
T KOG3628|consen  394 TPDLSSLKGCMVTCTAVDTEFQEIVSDRWLKPLGETNVKVVDFPILCLLWHGGIPISFKDWMEIGTVSIRRPEQMADTLP  473 (1363)
T ss_pred             CCCccceeeeEEeeeecchHHHHHHHHhhcccccCcCcceeechhhhhhhcCceEEEeccchhhhcccccCcccccccCc
Confidence            13577888776  4445544332    222222221                 23333344555543322111       


Q ss_pred             --------------------------CCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEee
Q psy8225         369 --------------------------KVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIK  422 (479)
Q Consensus       369 --------------------------~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~  422 (479)
                                                .+..+|.    ..++ ++.+.++++++..          .|++++.|||||.++
T Consensus       474 ~e~ll~~~~L~~~~V~v~~e~~is~~s~kd~~~----i~~g-~~t~~vv~~~t~~----------LC~~~eVGEIwVsS~  538 (1363)
T KOG3628|consen  474 GEGLLSKEALKLNEVEVDTEDDISSLSVKDVLC----IMPG-DATLAVVNPDTNQ----------LCKTDEVGEIWVSSN  538 (1363)
T ss_pred             cceeeeccccccceEEEcchhhhhhcCccccce----eccc-ceEEEEeCCCccc----------ccccCcceeEEEecC
Confidence                                      1111222    1222 4677777777665          689999999999844


Q ss_pred             cCCcccccccccCcchhHHHHHhh-------hccCCCcEEEcCCeeEEecCCcEEEecCCCCC
Q psy8225         423 ESRAESHFNGYADKKASEKKILRN-------VYSHGDAAFNTGDILIKDKFQYFYFKDRTGDA  478 (479)
Q Consensus       423 ~~~~~~~~~gY~~~~~~~~~~~~~-------~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~  478 (479)
                           +...+||.-+..++..|..       .+.....+.|||=+|++ .+|.+|++|=++|+
T Consensus       539 -----~~~~~~~al~~~t~~~F~~~~~~s~~~~~~n~~FmRtGLlGFv-~~gki~vl~~k~d~  595 (1363)
T KOG3628|consen  539 -----SLGKLFYALDKQTENTFKATPVESSGKPPSNVPFMRTGLLGFV-HNGKIYVLGLKEDG  595 (1363)
T ss_pred             -----CcccceeeccccccceEEeeeccccCCCCccchhhhhcceeee-eCCeEEEEEechhh
Confidence                 7888899655444433321       11122358999999999 45567777755553

>TIGR02304 aden_form_hyp probable adenylate-forming enzyme

Probab=99.41  E-value=5.5e-12  Score=122.41  Aligned_cols=145  Identities=18%  Similarity=0.043  Sum_probs=96.0

Q ss_pred             cEEEEEccCCCCCcceEEeehHHHHHHhhh-hhh--hcCCCCCCeEEEec--cchhhhhhHHHHHHHHhcCce-EEecC-
Q psy8225         210 KLAYIYTSGTTGLPKAAVMTHVRAMFMAIS-GRY--QTGLTSDDVVYTTL--PLYHTAGGLLGIGQCLLGGST-VVIRS-  282 (479)
Q Consensus       210 ~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~-~~~--~~~~~~~d~~~~~~--pl~h~~g~~~~~~~~l~~G~~-~v~~~-  282 (479)
                      ...+..||||||.|-.+..+.......... ...  ..++..++++...+  +. +.+       ..+..... +-... 
T Consensus       101 ~~~v~~TSGSSG~p~~f~~~~~~~~~~~a~~~~~~~~~g~~~g~r~a~~~~~~~-~ly-------~~~~~~~~~~~~~~l  172 (430)
T TIGR02304       101 NISVGLSSGTSGRRGLFVVSPEEQQMWAGGILAKVLPDGLFAKHRIAFFLRADN-NLY-------QSVNNRWISLDFFDL  172 (430)
T ss_pred             cEEEEECCCCCCCceEEEECHHHHHHHHHHHHhhhCccccccCCcEEEEEccCh-hHH-------HHHHhccceeeecCC
Confidence            456678999999999999998765432222 221  12344555544432  11 211       11111111 11111 


Q ss_pred             CCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEE--ecCCChhhHHHHHHHhCcceeeeeccccccC
Q psy8225         283 KFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFYGATEGN  360 (479)
Q Consensus       283 ~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~--G~~l~~~~~~~~~~~~~~~~v~~~YG~tE~~  360 (479)
                      ..+.+..++.|++++++++.++|+.+..|++........ ..++.++  ||.++++..+.+++.||+ ++++.||+|| |
T Consensus       173 ~~~~~~~l~~L~~~~P~~L~g~pS~l~~LA~~~~~~~l~-~~~k~ii~~~E~l~~~~r~~Ie~~fg~-~V~~~YG~tE-g  249 (430)
T TIGR02304       173 LAPFQAHIKRLNQRKPSIIVAPPSVLRALALEVMEGELT-IKPKKVISVAEVLEPQDRELIRNVFKN-TVHQIYQATE-G  249 (430)
T ss_pred             CcCHHHHHHHHHHhCCCEEEEcHHHHHHHHHHHHhcCCC-CCceEEEEccCCCCHHHHHHHHHHhCC-CeeEccCCch-h
Confidence            246788999999999999999999999998865443332 3566554  999999999999999998 8999999999 5


Q ss_pred             ccccc
Q psy8225         361 ANLMN  365 (479)
Q Consensus       361 ~~~~~  365 (479)
                      .+...
T Consensus       250 ~la~e  254 (430)
T TIGR02304       250 FLAST  254 (430)
T ss_pred             heEEe
Confidence            44433

Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase.

>PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria

Probab=99.18  E-value=1.8e-09  Score=102.49  Aligned_cols=228  Identities=19%  Similarity=0.207  Sum_probs=132.6

Q ss_pred             CCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhh---hc-CCCCCC-eEEEeccchhhhhh----HHHHHHHHhcC
Q psy8225         205 NKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRY---QT-GLTSDD-VVYTTLPLYHTAGG----LLGIGQCLLGG  275 (479)
Q Consensus       205 ~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~---~~-~~~~~d-~~~~~~pl~h~~g~----~~~~~~~l~~G  275 (479)
                      ...+++..++-||||||.|.-+.+.+..+......+..   .+ +..... .++...|-......    ..........+
T Consensus        86 ~~~e~~~~~~tSSGTtG~~S~i~~D~~t~~~~~~~~~~~~~~~~~~~~~~~~il~l~p~~~~~~~~~~~~~~~~~~~~~~  165 (365)
T PF04443_consen   86 VPEEEVEKVFTSSGTTGQPSRIFRDRETAERQQKSLNKIFQHFLGPSRLPMLILDLSPSPENRNSFSARYAGILGELFFG  165 (365)
T ss_pred             cChhhheeEEECCCCCCCCcEEEECHHHHHHHHHHHHHHHHhhcccccCCeEEEEecCCcccccchHHHHHHHHhhcccC
Confidence            34566778889999999987677766555544333222   22 222222 23333343221111    11222233445


Q ss_pred             ceEEecC-CCChhHHHHHHH----HhcccEEEEehHHHHHHhcCCCCCC--CCCC-ceeEEE-e-------cCCC-hhhH
Q psy8225         276 STVVIRS-KFSASNFWKDCI----KYNCTVAQYIGEMCRYLLAVPEKPE--DTQH-SVKMMI-G-------NGLR-PQVW  338 (479)
Q Consensus       276 ~~~v~~~-~~~~~~~~~~i~----~~~~t~~~~~p~~l~~l~~~~~~~~--~~l~-~lr~~~-G-------~~l~-~~~~  338 (479)
                      ....+.. .++.+.++..+.    +.++..+++.|.++..++...+...  ..++ ..+++- |       +.++ ++..
T Consensus       166 ~~~~l~~~~ld~~~~~~~L~~~~~~~~pv~l~Gftf~~~~~~~~l~~~~~~~~L~~~s~vi~~GGwK~~~~e~v~r~ef~  245 (365)
T PF04443_consen  166 SRFALDNDELDLEGLIEALFRAEHSGEPVLLFGFTFFIWFLLDELEERGIRFRLPKGSIVIHGGGWKGRRKEAVSREEFY  245 (365)
T ss_pred             ceeeecCCccCHHHHHHHHHHHHhCCCCEEEECchHHHHHHHHHHHhcCCcccCCCCCEEEeCCCCCccccCccCHHHHH
Confidence            5544432 356666666554    4467778888887666554333222  2233 344444 2       2354 6777


Q ss_pred             HHHHHHhCc---ceeeeeccccccCcccccCCCCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCc
Q psy8225         339 EPFQKRFGL---DRICEFYGATEGNANLMNADGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPG  415 (479)
Q Consensus       339 ~~~~~~~~~---~~v~~~YG~tE~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~G  415 (479)
                      +.+.+.||.   ..+++.|||||...........    -.++|      .. +.+.|+++.+          +|+.|+.|
T Consensus       246 ~~l~~~~Gv~~~~~i~~~ygmtEl~s~~~~~~~~----~~~~p------~w-V~iRDp~tl~----------~~~~Ge~G  304 (365)
T PF04443_consen  246 ARLQEVFGVIPIENIYDMYGMTELNSQAYECGHG----HFHVP------PW-VIIRDPETLE----------PLPPGETG  304 (365)
T ss_pred             HHHHHHHCCCCHHHeeeeeeccccchhheeCCCC----cccCC------Ce-EEEECCCCCc----------CCCCCCee
Confidence            788888987   5899999999987654433211    11222      23 7777988766          77999999


Q ss_pred             eEEEEeecCCcccccccccCcchhHHHHHhhhccCCCcEEEcCCeeEEecC--------CcEEEecCCCC
Q psy8225         416 ILIGMIKESRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKF--------QYFYFKDRTGD  477 (479)
Q Consensus       416 el~v~~~~~~~~~~~~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~d--------G~l~~~GR~~d  477 (479)
                      -|.+-    .+.+  ..|                  -+..-|.|+|.+..+        .++.++||.+.
T Consensus       305 li~vi----dl~~--~s~------------------p~~IlTeDlGvl~~~~~c~cr~g~~f~vlGR~~~  350 (365)
T PF04443_consen  305 LIQVI----DLAN--TSY------------------PGFILTEDLGVLHGDDDCGCRKGKYFEVLGRADG  350 (365)
T ss_pred             EEEEE----cccc--cCC------------------CcEEEEcceeeecCCCCCCCccCCEEEEEeCCCC
Confidence            99765    3310  111                  345789999988654        27999999863

LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence

>PRK09188 serine/threonine protein kinase; Provisional

Probab=97.67  E-value=3e-05  Score=74.03  Aligned_cols=26  Identities=19%  Similarity=0.231  Sum_probs=24.2

Q ss_pred             CCcEEEcCCeeEE-ecCCcEEEecCCC
Q psy8225         451 GDAAFNTGDILIK-DKFQYFYFKDRTG  476 (479)
Q Consensus       451 ~~g~~~TGD~g~~-d~dG~l~~~GR~~  476 (479)
                      .+|||+|||+|++ |+||+|+|+||.|
T Consensus       207 ~dgW~~TGDlg~~~d~dG~l~~~gR~~  233 (365)
T PRK09188        207 SRIWLATGKKVYNFITRGLFSWSDGEG  233 (365)
T ss_pred             cCcEEeCCCEEEEEcCCCeEEEEecCc
Confidence            3899999999998 7999999999987

>PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin

Probab=97.28  E-value=0.00083  Score=68.00  Aligned_cols=119  Identities=21%  Similarity=0.240  Sum_probs=62.2

Q ss_pred             CCceeEEE--ecCCChhhHHHHHHHhCcc-eeeeeccccccCcccccCCCCCCcccccCccccCCCceeeEEeCCCC---
Q psy8225         322 QHSVKMMI--GNGLRPQVWEPFQKRFGLD-RICEFYGATEGNANLMNADGKVGAVGYIPYIAIPFYPVGLIKCDPET---  395 (479)
Q Consensus       322 l~~lr~~~--G~~l~~~~~~~~~~~~~~~-~v~~~YG~tE~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~d~~~---  395 (479)
                      .++|+++.  ++.-...-..++++.+|.. .+...|++||+...+ +..  ++..+.++-+..+  -.+..-+++..   
T Consensus       266 WP~L~~v~~~~~g~~~~y~~~l~~~~g~~~~~~~~y~ASEg~i~i-~~~--~~~~~~~l~~~~~--ffEFip~~~~~~~~  340 (528)
T PF03321_consen  266 WPNLKLVSCWGGGSMAPYAPKLREYFGGVPIQSKGYGASEGFIGI-PLD--PEDPGYVLAPDSG--FFEFIPVDEDEQNP  340 (528)
T ss_dssp             STT--EEEEE-SGGGGGGHHHHHHHHTTS-EEE-EEEETTEEEEE-ES---CCC--EEE-TTSS--EEEEEE-STT----
T ss_pred             CCCCcEEEEEcCCChHHHHHHHHHHcCCCceeeccccccceEEEE-ecC--CCCCceEeecCCe--EEEEEeccCCcccc
Confidence            57888554  5554456677888888863 344689999974333 221  2222332211111  24555455332   


Q ss_pred             ---CCccccCCCccccccCCCCceEEEEeecCCcccccccccCcchhHHHHHhhhccCCCcEEEcCCeeEEec--CC--c
Q psy8225         396 ---SEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDK--FQ--Y  468 (479)
Q Consensus       396 ---~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~--dG--~  468 (479)
                         .+.+     ..-+|+.|+.=||++..    .    .|.|.                   |+.||+.++..  ++  .
T Consensus       341 ~~~~~~l-----~~~ele~G~~YelviTt----~----~GLyR-------------------Y~iGDvVrv~gf~~~~P~  388 (528)
T PF03321_consen  341 SEQPKTL-----LLHELEVGEEYELVITT----N----SGLYR-------------------YRIGDVVRVTGFYNQTPR  388 (528)
T ss_dssp             ---SSSE-----EGGG--TT-EEEEEEES----T----TS-SS-------------------EEECEEEEEEEEETTEEE
T ss_pred             cCCCcee-----cHHHhcCCCeEEEEEec----c----cceee-------------------eecCCEEEEeeccCCCcE
Confidence               1211     12356777777888862    1    33222                   89999999954  45  7


Q ss_pred             EEEecCCCC
Q psy8225         469 FYFKDRTGD  477 (479)
Q Consensus       469 l~~~GR~~d  477 (479)
                      +.|+||.+.
T Consensus       389 i~F~~R~~~  397 (528)
T PF03321_consen  389 IEFVGRRGQ  397 (528)
T ss_dssp             EEEEEETTE
T ss_pred             EEEeccCCc
Confidence            999999884

The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A.

>PLN02249 indole-3-acetic acid-amido synthetase

Probab=95.80  E-value=0.097  Score=53.58  Aligned_cols=127  Identities=14%  Similarity=0.106  Sum_probs=64.7

Q ss_pred             CCceeE---EEecCCChhhHHHHHHHhCcc-eeeeeccccccCcccccCC-CCCCcccccCccccCCCceeeEEeCCCCC
Q psy8225         322 QHSVKM---MIGNGLRPQVWEPFQKRFGLD-RICEFYGATEGNANLMNAD-GKVGAVGYIPYIAIPFYPVGLIKCDPETS  396 (479)
Q Consensus       322 l~~lr~---~~G~~l~~~~~~~~~~~~~~~-~v~~~YG~tE~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~i~d~~~~  396 (479)
                      .++++.   +.++.+. .-+..++..+|.. .+...|++||+...+-..+ ..+...+..+-  +...-.+..-+++...
T Consensus       301 WPnl~~i~~~~~G~~~-~Y~~~l~~~~g~~~~~~~~Y~ASEg~~gi~~~~~~~p~~~~~~l~--~~~~ffEFiP~~~~~~  377 (597)
T PLN02249        301 WPNTKYLDVIVTGAMA-QYIPMLEYYSGGLPMASTIYASSESYFGINLNPMCKPSEVSYTIM--PNMAYFEFLPHNHDGD  377 (597)
T ss_pred             CCCCCeEEEEecCChH-HHHHHHHHHcCCCccccccccccceEEEeecCCCCCCCCcceEec--CCcEEEEeeecccCCc
Confidence            567554   3455555 5566777767553 4557899999764432211 22333333211  1111133333332211


Q ss_pred             CccccCC-CccccccCCCCceEEEEeecCCcccccccccCcchhHHHHHhhhccCCCcEEEcCCeeEEecC----CcEEE
Q psy8225         397 EPIRNKD-GLCIPCKAEEPGILIGMIKESRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKF----QYFYF  471 (479)
Q Consensus       397 ~~i~~~~-g~~~~~~~~~~Gel~v~~~~~~~~~~~~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~d----G~l~~  471 (479)
                      ....+.+ =...+|+.|+.=+|++...        .|.|                   -|+.||+.+++.-    =.|.|
T Consensus       378 ~~~~~~~~v~l~eVe~G~~Y~lVvTT~--------~GLy-------------------RY~iGDvVrvtgf~~~~P~i~F  430 (597)
T PLN02249        378 GALDETSLVELADVEVGKEYELVITTY--------AGLY-------------------RYRVGDILRVTGFHNSAPQFKF  430 (597)
T ss_pred             ccCCCCcEecHHHcCCCCeEEEEEEcc--------ccee-------------------EeecCCEEEEeeccCCCcEEEE
Confidence            0000000 0122566777778887621        2221                   2899999999643    26899


Q ss_pred             ecCCCCC
Q psy8225         472 KDRTGDA  478 (479)
Q Consensus       472 ~GR~~d~  478 (479)
                      +||.+.+
T Consensus       431 ~gR~~~~  437 (597)
T PLN02249        431 IRRKNVL  437 (597)
T ss_pred             EccCCcc
Confidence            9997753

>PLN02247 indole-3-acetic acid-amido synthetase

Probab=95.52  E-value=0.65  Score=47.45  Aligned_cols=28  Identities=25%  Similarity=0.220  Sum_probs=23.2

Q ss_pred             CCCcEEEEEccCCCC-CcceEEeehHHHH
Q psy8225         207 PSDKLAYIYTSGTTG-LPKAAVMTHVRAM  234 (479)
Q Consensus       207 ~~~~~~i~~TSGTTG-~pK~v~~s~~~l~  234 (479)
                      ++.+..+..|||||| ++|-+..|+..+-
T Consensus        88 ~~pi~~F~~SSGTT~g~~K~IP~t~e~l~  116 (606)
T PLN02247         88 AQPITELLTSSGTSGGQPKLMPSTAEELD  116 (606)
T ss_pred             CCCcceeeccCCCCCCceeEeeccHHHHH
Confidence            456677889999995 8999999997654

>PLN02620 indole-3-acetic acid-amido synthetase

Probab=94.91  E-value=0.47  Score=48.34  Aligned_cols=29  Identities=17%  Similarity=0.095  Sum_probs=23.2

Q ss_pred             CCCcEEEEEccCCCC-CcceEEeehHHHHH
Q psy8225         207 PSDKLAYIYTSGTTG-LPKAAVMTHVRAMF  235 (479)
Q Consensus       207 ~~~~~~i~~TSGTTG-~pK~v~~s~~~l~~  235 (479)
                      +..+..+..|||||| ++|-+..|+..+-.
T Consensus       100 ~~pi~~F~~SSGTT~g~~K~IP~t~e~l~~  129 (612)
T PLN02620        100 SKPISEFLTSSGTSGGERKLMPTIEEELGR  129 (612)
T ss_pred             CCChhhhhhcCCCCCCceeeeecCHHHHHH
Confidence            445557789999997 69999999987654

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]

Probab=94.44  E-value=0.25  Score=47.95  Aligned_cols=88  Identities=18%  Similarity=0.121  Sum_probs=70.9

Q ss_pred             Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchH--HHHHHHHhhhcCceeeeecCCcchHHHHHHHHhccceEEEe
Q psy8225          70 VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPE--YVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVAECKAIIY  146 (479)
Q Consensus        70 ~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e--~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~  146 (479)
                      +|+ +...-+..+|+.|...|..+||+|.....-+..  -.-..+|+.++|+.++|+.+... +....++++.++.+|.+
T Consensus       110 ~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~~~g~~-~~~~~l~~df~~tvI~~  188 (438)
T COG1541         110 YTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPISGGNT-ERQLELMKDFKPTVIAA  188 (438)
T ss_pred             cCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEccCCccH-HHHHHHHHhcCCcEEEE
Confidence            899 999999999999999999999998877762211  16678999999999999988433 45567899999999999


Q ss_pred             ChhhHHHHHHhh
Q psy8225         147 GAELSEALTEVK  158 (479)
Q Consensus       147 ~~~~~~~~~~~~  158 (479)
                      .+...-.+.+.+
T Consensus       189 tps~~l~lae~~  200 (438)
T COG1541         189 TPSYLLYLAEEA  200 (438)
T ss_pred             ChHHHHHHHHHH
Confidence            987655444433

>KOG1177|consensus

Probab=86.93  E-value=9.6  Score=37.45  Aligned_cols=93  Identities=9%  Similarity=0.038  Sum_probs=71.9

Q ss_pred             cCCCccccEEE------------Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcC--CchHHHHHHHHhhhcCceeeee
Q psy8225          59 EVPMTGAYKYT------------VTF-QVEDHSNRIANFFKSKGLQRGDAVALFME--GQPEYVCMWLGLSKIGVVAAFI  123 (479)
Q Consensus        59 ~~p~~~a~~~~------------~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~--n~~e~~~~~lA~~~~G~~~v~l  123 (479)
                      ..||.++-+..            +|. ++.+.+..++..+   |+...+++.+-.|  .+.-.++..+|++..|+..|.-
T Consensus       231 ~~pdd~~niQFTSGTTG~PKgatLsH~~~~Nna~~vg~r~---g~~e~~~i~~~~Pl~H~~G~~~~~ma~l~~gat~Vfp  307 (596)
T KOG1177|consen  231 LSPDDAVNIQFTSGTTGAPKGATLSHYNFLNNARAVGARA---GYNEKHRICIPNPLYHCFGCVLGVMAALMHGATIVFP  307 (596)
T ss_pred             cCCCCceEEEeccCCCCCCcceeeehhhhhhhHHHHHHHh---CcCcceEEEecCchHHHHHHHHHHHHHHHhCcEEEee
Confidence            45677766665            899 9999998887765   6666445544444  3455577889999999999988


Q ss_pred             cCCcchHHHHHHHHhccceEEEeChhhHHHH
Q psy8225         124 NTNQRQHILIHSIKVAECKAIIYGAELSEAL  154 (479)
Q Consensus       124 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~  154 (479)
                      .|.+.+...-+.+.+.+|..++.....+-.+
T Consensus       308 ~~~f~~k~alqai~~ekcT~l~gtPtM~~Dl  338 (596)
T KOG1177|consen  308 APSFDPKDALQAISNEKCTTLYGTPTMFVDL  338 (596)
T ss_pred             CCCCChHHHHHHHHhhceEEEecChHHHHHH
Confidence            9999999999999999999999988655433

>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase

Probab=86.26  E-value=5.4  Score=39.44  Aligned_cols=85  Identities=16%  Similarity=0.119  Sum_probs=64.4

Q ss_pred             Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCch--HHHHHHHHhhhcCceeeeecCCcchHHHHHHHHhccceEEEe
Q psy8225          70 VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQP--EYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVAECKAIIY  146 (479)
Q Consensus        70 ~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~--e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~  146 (479)
                      +|. .+......++..+...|++++|++........  ......+++...|+.++++.+.. .+.+...+++.++.+++.
T Consensus        95 ~t~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~i~~~~~t~l~~  173 (422)
T TIGR02155        95 YTQNDIDTWSSVVARSIRAAGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPISGGQ-TEKQVQLIQDFKPDIIMV  173 (422)
T ss_pred             cCHHHHHHHHHHHHHHHHHcCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEecCCCC-HHHHHHHHHHHCCCEEEE
Confidence            677 77777777788888889999999877655432  22334677888999999887654 477889999999999999


Q ss_pred             ChhhHHHHH
Q psy8225         147 GAELSEALT  155 (479)
Q Consensus       147 ~~~~~~~~~  155 (479)
                      .......+.
T Consensus       174 ~Ps~l~~L~  182 (422)
T TIGR02155       174 TPSYMLNLL  182 (422)
T ss_pred             cHHHHHHHH
Confidence            887655443

Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.

>TIGR03335 F390_ftsA coenzyme F390 synthetase

Probab=85.04  E-value=7.5  Score=38.83  Aligned_cols=79  Identities=16%  Similarity=0.138  Sum_probs=60.7

Q ss_pred             Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchH--HHHHHHHhhhcCceeeeecCCcchHHHHHHHHhccceEEEe
Q psy8225          70 VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPE--YVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVAECKAIIY  146 (479)
Q Consensus        70 ~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e--~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~  146 (479)
                      +|. ++...+...+..+...|+.++|++.+..+.+..  .....+++...|+.+++...   .+....+++..++.+++.
T Consensus       106 ~T~~dl~~~~~~~~r~~~~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~~~---~~~~~~~i~~~~~t~l~~  182 (445)
T TIGR03335       106 LTWDDWKRYAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPEGK---CTFPIRIIESYRPTGIVA  182 (445)
T ss_pred             ecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcCCc---hhHHHHHHHHhCCCEEEE
Confidence            788 998888888888888999999999988876543  23456788899998776543   234567889999999987


Q ss_pred             ChhhH
Q psy8225         147 GAELS  151 (479)
Q Consensus       147 ~~~~~  151 (479)
                      .....
T Consensus       183 ~ps~l  187 (445)
T TIGR03335       183 SVFKL  187 (445)
T ss_pred             CHHHH
Confidence            66543

This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.

>KOG1179|consensus

Probab=82.46  E-value=1.6  Score=43.42  Aligned_cols=50  Identities=46%  Similarity=0.790  Sum_probs=42.5

Q ss_pred             cccccCccccceeeeee-cCCCcccHHHHHHhhhhcccchhHHHHHHHhhc
Q psy8225          10 STQIPNVEGKAGMAAIV-DTENSLDLKQLISGMQKTLPTYARPLFVRTIRE   59 (479)
Q Consensus        10 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~   59 (479)
                      .+.+|+.|||+||+++. +.....|..++......++|.+..-.|.+..++
T Consensus       543 GV~VP~~EGRaGMAaI~~~p~~~~d~~~l~~~l~~~LP~YA~P~FlRl~~~  593 (649)
T KOG1179|consen  543 GVTVPGYEGRAGMAAIVLDPTTEKDLEKLYQHLRENLPSYARPRFLRLQDE  593 (649)
T ss_pred             EEecCCccCccceEEEEecCcccchHHHHHHHHHhhCccccchHHHHHHhh
Confidence            35699999999999998 666678999999999999999988777776554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	479
3a9u_A	536	Crystal Structures And Enzymatic Mechanisms Of A Po		8e-16
3r44_A	517	Mycobacterium Tuberculosis Fatty Acyl Coa Synthetas		2e-15
3t5b_A	396	Crystal Structure Of N-Terminal Domain Of Facl13 Fr		9e-15
4fuq_A	503	Crystal Structure Of Apo Matb From Rhodopseudomonas		1e-12
3etc_A	580	2.1 A Structure Of Acyl-Adenylate Synthetase From M		2e-11
3tsy_A	979	4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Pr		3e-10
3b7w_A	570	Crystal Structure Of Human Acyl-Coa Synthetase Medi		7e-10
2wd9_A	569	Crystal Structure Of Human Acyl-coa Synthetase Medi		7e-10
1ry2_A	663	Crystal Structure Of Yeast Acetyl-Coenzyme A Synthe		5e-09
4fut_A	503	Crystal Structure Of Atp Bound Matb From Rhodopseud		5e-09
4gxr_A	503	Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Len		6e-09
4g36_A	555	Photinus Pyralis Luciferase In The Adenylate-Formin		6e-09
3iep_A	551	Firefly Luciferase Apo Structure (P41 Form) Length		6e-09
1ba3_A	550	Firefly Luciferase In Complex With Bromoform Length		6e-09
4gxq_A	506	Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimer		6e-09
4g37_A	555	Structure Of Cross-Linked Firefly Luciferase In Sec		2e-08
1ult_A	541	Crystal Structure Of Tt0168 From Thermus Thermophil		2e-08
2d1q_A	548	Crystal Structure Of The Thermostable Japanese Fire		4e-08
2d1s_A	548	Crystal Structure Of The Thermostable Japanese Fire		5e-08
2d1t_A	548	Crystal Structure Of The Thermostable Japanese Fire		7e-08
3dlp_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P,		2e-07
2qvx_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATIO		2e-07
2qvz_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATIO		2e-07
1t5d_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chl		2e-07
3cw8_X	504	4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cb		2e-07
3qya_A	582	Crystal Structure Of A Red-Emitter Mutant Of Lampyr		2e-07
2v7b_A	529	Crystal Structures Of A Benzoate Coa Ligase From Bu		1e-06
1t5h_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SE		1e-06
3nyq_A	505	Malonyl-Coa Ligase Ternary Product Complex With Met		9e-05
2vsq_A	1304	Structure Of Surfactin A Synthetase C (Srfa-C), A N		1e-04
3pbk_A	583	Structural And Functional Studies Of Fatty Acyl-Ade		3e-04
3g7s_A	549	Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Li		4e-04

>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus Tomentosa 4- Coumarate--Coa Ligase Length = 536

Iteration: 1
 Score = 81.6 bits (200), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 90/357 (25%), Positives = 148/357 (41%), Gaps = 47/357 (13%)
Query: 74  VEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILI 133
           VE  + R+A+     G+Q+GD + LF+   PE+V  +LG S  G +    N       L 
Sbjct: 55  VELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELA 114
Query: 134 HSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVL-----PSTTLLDE 188
              K +  K +I  A   E   +VKD             R+   KV+     P   L   
Sbjct: 115 KHAKASRAKLLITQACYYE---KVKD-----------FARESDVKVMCVDSAPDGCLHFS 160
Query: 189 ELPEVSA-KSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTG-- 245
           EL +    ++P  DI    P D +A  Y+SGTTGLPK  ++TH + +  +++ +      
Sbjct: 161 ELTQADENEAPQVDI---SPDDVVALPYSSGTTGLPKGVMLTH-KGLITSVAQQVDGDNP 216
Query: 246 ---LTSDDVVYTTLPLYHTAXXXXXXXXXXXXXSTVVIRSKFSASNFWKDCIKYNCTVAQ 302
                S+DV+   LP++H               + ++I  KF   +      KY  ++A 
Sbjct: 217 NLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAP 276
Query: 303 YIGEMCRYLLAVPEKPEDTQHSVKMMIGNG--LRPQVWEPFQKRFGLDRICEFYGATEGN 360
            +  +   +   P+  +    S++M+   G  L  ++ +  + +F   R+ + YG TE  
Sbjct: 277 VVPPVMMSIAKSPDLDKHDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAG 336
Query: 361 ANLMNA--------DGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPI-RNKDG-LCI 407
             L           D K GA G +   A       +   DPET   + RN+ G +CI
Sbjct: 337 PVLAMCLAFAKEPFDIKPGACGTVVRNA------EMKIVDPETGASLPRNQPGEICI 387

>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase Length = 517

Iteration: 1
 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 97/420 (23%), Positives = 155/420 (36%), Gaps = 68/420 (16%)
Query: 73  QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHIL 132
           Q+   +NR A+   + G+ +GD VAL M    E+ C++ G +K+G VA  INT      +
Sbjct: 48  QMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLAAPEV 107
Query: 133 IHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLD----- 187
              +  +  K +IYGA  +  +  ++                  A+  P  T+ D     
Sbjct: 108 SFILSDSGSKVVIYGAPSAPVIDAIR------------------AQADPPGTVTDWIGAD 149
Query: 188 ---EELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQT 244
              E L   +A  P  +   +   D L  +YTSGTTG PK  V TH      A S     
Sbjct: 150 SLAERLRSAAADEPAVECGGD---DNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTI 206
Query: 245 GLTSDDVVYTTLPLYHTAXXXXXXXXXXXXXSTVVIRSKFSASNFWKDCIKYNCTVAQYI 304
            +   D +   LP++H A              T++   +F A+  W   ++    +   +
Sbjct: 207 DVRYRDRLLLPLPMFHVAALTTVIFSAMRGV-TLISMPQFDATKVWSLIVEERVCIGGAV 265
Query: 305 GEMCRYLLAVPEKPEDTQHSVKMMIGNGLRPQVWEPFQKRFGLDRI--CEFYGATE---G 359
             +  ++  VPE  E      +  I  G    + E   K +    I   + Y  TE   G
Sbjct: 266 PAILNFMRQVPEFAELDAPDFRYFITGG--APMPEALIKIYAAKNIEVVQGYALTESCGG 323
Query: 360 NANLMNADG--KVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGIL 417
              L++ D   K G+ G               +    T   +R  DG+       E  I 
Sbjct: 324 GTLLLSEDALRKAGSAG---------------RATMFTDVAVRGDDGVIREHGEGEVVI- 367
Query: 418 IGMIKESRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGD 477
                  +++     Y ++  + +    N +      F TGDI   D   Y Y KDR  D
Sbjct: 368 -------KSDILLKEYWNRPEATRDAFDNGW------FRTGDIGEIDDEGYLYIKDRLKD 414

>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From Mycobacterium Tuberculosis Length = 396

Iteration: 1
 Score = 78.2 bits (191), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 65/268 (24%), Positives = 106/268 (39%), Gaps = 30/268 (11%)
Query: 73  QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHIL 132
           Q+   +NR A+   + G+ +GD VAL M    E+ C++ G +K+G VA  INT      +
Sbjct: 34  QMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLAAPEV 93
Query: 133 IHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLD----- 187
              +  +  K +IYGA  +  +  ++                  A+  P  T+ D     
Sbjct: 94  SFILSDSGSKVVIYGAPSAPVIDAIR------------------AQADPPGTVTDWIGAD 135
Query: 188 ---EELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQT 244
              E L   +A  P  +   +   D L  +YTSGTTG PK  V TH      A S     
Sbjct: 136 SLAERLRSAAADEPAVECGGD---DNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTI 192
Query: 245 GLTSDDVVYTTLPLYHTAXXXXXXXXXXXXXSTVVIRSKFSASNFWKDCIKYNCTVAQYI 304
            +   D +   LP++H A              T++   +F A+  W   ++    +   +
Sbjct: 193 DVRYRDRLLLPLPMFHVAALTTVIFSAMRGV-TLISMPQFDATKVWSLIVEERVCIGGAV 251
Query: 305 GEMCRYLLAVPEKPEDTQHSVKMMIGNG 332
             +  ++  VPE  E      +  I  G
Sbjct: 252 PAILNFMRQVPEFAELDAPDFRYFITGG 279

>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas Palustris Length = 503

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 101/407 (24%), Positives = 152/407 (37%), Gaps = 51/407 (12%)
Query: 78  SNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIK 137
           + R+AN   ++GLQ GD VA   E   E + ++L   + G V   +NT    H L + I 
Sbjct: 38  AGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPLNTAYTLHELDYFIT 97
Query: 138 VAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKS 197
            AE K ++      + +  +   + G ++   G    P  +           L + +A +
Sbjct: 98  DAEPKIVVCDPSKRDGIAAIAAKV-GATVETLG----PDGR---------GSLTDAAAGA 143
Query: 198 PTEDIKKNKPSDKLAYI-YTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTL 256
                  ++ +D LA I YTSGTTG  K A ++H      +++       T DDV+   L
Sbjct: 144 SEAFATIDRGADDLAAILYTSGTTGRSKGAXLSHDNLASNSLTLVDYWRFTPDDVLIHAL 203
Query: 257 PLYHTAXXXXXXXXXXXXXSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPE 316
           P+YHT               + +   KF         +    TV   +      LL  P 
Sbjct: 204 PIYHTHGLFVASNVTLFARGSXIFLPKFDPDKILD--LXARATVLXGVPTFYTRLLQSPR 261
Query: 317 KPEDTQHSVKMMIGNG--LRPQVWEPFQKRFGLDRICEFYGATEGNANLMN---ADGKVG 371
             ++T    ++ I     L       +  + G   + E YG TE N N  N    D   G
Sbjct: 262 LTKETTGHXRLFISGSAPLLADTHREWSAKTG-HAVLERYGXTETNXNTSNPYDGDRVPG 320
Query: 372 AVGYIPYIAIPFYP-VGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHF 430
           AVG       P  P V     DPET + +   D              IG I E +  + F
Sbjct: 321 AVG-------PALPGVSARVTDPETGKELPRGD--------------IGXI-EVKGPNVF 358
Query: 431 NGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGD 477
            GY       K   R+     D  F TGD+   D+  Y +   R  D
Sbjct: 359 KGYWRXPEKTKSEFRD-----DGFFITGDLGKIDERGYVHILGRGKD 400

>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From Methanosarcina Acetivorans Containing A Link Between Lys256 And Cys298 Length = 580

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 93/413 (22%), Positives = 158/413 (38%), Gaps = 43/413 (10%)
Query: 77  HSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSI 136
           +S++ ANFF   G+ +GD V L ++ + ++    LGL K+G +A       +   +++ I
Sbjct: 95  YSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCMLGLHKLGAIAVPATHMLKTRDIVYRI 154
Query: 137 KVAECKAIIYGAE--LSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVS 194
           + A  K I+  AE  + E + E       I L  A    K    VL       +EL E S
Sbjct: 155 EKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKA----KVGGDVLEGWIDFRKELEESS 210
Query: 195 A--KSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVV 252
              + PT ++        L Y ++SGT G PK     +   +   ++ +Y   +  D + 
Sbjct: 211 PIFERPTGEVSTKNEDICLVY-FSSGTAGFPKMVEHDNTYPLGHILTAKYWQNVEDDGLH 269
Query: 253 YTTLPLYHTAXXXXXXXXXXXXXSTVVI--RSKFSASNFWKDCIKYNCTVAQYIGEMCRY 310
           YT                       V +    +F A N  +   KY  T       + R+
Sbjct: 270 YTVADSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRF 329
Query: 311 LLAVPEKPEDTQH------SVKMMIGNGLRPQVWEPFQKRFGLDRICEFYGATEGNANLM 364
           L+      ED  H         ++ G  L P+V+  F +  G+ ++ E +G TE      
Sbjct: 330 LIK-----EDLSHYNFSTLKYAVVAGEPLNPEVFNRFLEFTGI-KLMEGFGQTE------ 377
Query: 365 NADGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKES 424
                V  +   P++     P  + K  P     + ++DG    C+  E G ++    E 
Sbjct: 378 ----TVVTIATFPWMEPK--PGSIGKPTPGYKIELMDRDGRL--CEVGEEGEIVINTMEG 429
Query: 425 RAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGD 477
           +    F  Y       ++   + Y H      TGD+   D+  Y +F  R  D
Sbjct: 430 KPVGLFVHYGKDPERTEETWHDGYYH------TGDMAWMDEDGYLWFVGRADD 476

>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein Length = 979

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 86/367 (23%), Positives = 149/367 (40%), Gaps = 36/367 (9%)
Query: 61  PMTGAYKYTVTFQVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVA 120
           P    Y Y+    V   S +IA  F   G+ + D V L +   PE+V  +L  S  G  A
Sbjct: 84  PTGHVYTYS---DVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATA 140
Query: 121 AFINTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVL 180
              N       +    K +  K II  A   + +  +++    + +        P    +
Sbjct: 141 TAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDDGVVIVCIDDNESVP----I 196
Query: 181 PSTTLLDEELPEVSAK-SPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTH---VRAMFM 236
           P   L   EL + + + S   D  +  P D +A  Y+SGTTGLPK  ++TH   V ++  
Sbjct: 197 PEGCLRFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQ 256
Query: 237 AISGRY-QTGLTSDDVVYTTLPLYHTAXXXXXXXXXXXXXSTVVIRSKFSASNFWKDCIK 295
            + G        SDDV+   LP++H               + ++I  KF  +   +   +
Sbjct: 257 QVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQR 316
Query: 296 YNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMM--IGNGLRP---QVWEPFQKRFGLDRI 350
              TVA  +  +   +LA+ +  E  ++ +  +  + +G  P   ++ +    +F   ++
Sbjct: 317 CKVTVAPMVPPI---VLAIAKSSETEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKL 373
Query: 351 CEFYGATEGNANLMNADG--------KVGAVGYIPYIAIPFYPVGLIKCDPETSEPI-RN 401
            + YG TE    L  + G        K GA G +   A       +   DP+T + + RN
Sbjct: 374 GQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNA------EMKIVDPDTGDSLSRN 427
Query: 402 KDG-LCI 407
           + G +CI
Sbjct: 428 QPGEICI 434

>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase Medium-Chain Family Member 2a, With L64p Mutation Length = 570

Iteration: 1
 Score = 62.0 bits (149), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 96/413 (23%), Positives = 161/413 (38%), Gaps = 41/413 (9%)
Query: 73  QVEDHSNRIANFFKSK-GLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHI 131
           ++ ++S + AN      GLQRGD VA+ +   PE+  + LG  + G++        +   
Sbjct: 78  ELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTD 137
Query: 132 LIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELP 191
           +++ +++++ KAI+ G E+ + +  V    P + +    + +      L    LL+E   
Sbjct: 138 ILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEKSCDG-WLNFKKLLNE--- 193
Query: 192 EVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDV 251
                S T    +    +  A  +TSGT+GLPK A  ++      A      TGL + D+
Sbjct: 194 ----ASTTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDAGWTGLQASDI 249
Query: 252 VYTT--LPLYHTAXXXXXXXXXXXXXSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCR 309
           ++T                       + V +  KF      K    Y   +   +G    
Sbjct: 250 MWTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSY--PIKSMMGAPIV 307
Query: 310 YLLAVPE-----KPEDTQHSVKMMIGNGLRPQVWEPFQKRFGLDRICEFYGATEGNANLM 364
           Y + + +     K    Q+ V   +G  L P+  E ++ + GLD I E YG TE     M
Sbjct: 308 YRMLLQQDLSSYKFPHLQNCVT--VGESLLPETLENWRAQTGLD-IRESYGQTETGLTCM 364
Query: 365 NADGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKES 424
            +       GY+   A   Y V +I           +K  +  P    + GI    +K  
Sbjct: 365 VSKTMKIKPGYMG-TAASCYDVQIID----------DKGNVLPPGTEGDIGI---RVKPI 410
Query: 425 RAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGD 477
           R    F+GY D        +R  +      +  GD  IKD+  YF F  R  D
Sbjct: 411 RPIGIFSGYVDNPDKTAANIRGDF------WLLGDRGIKDEDGYFQFMGRADD 457

>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase Medium-chain Family Member 2a (l64p Mutation) In Complex With Ibuprofen Length = 569

Iteration: 1
 Score = 62.0 bits (149), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 96/413 (23%), Positives = 161/413 (38%), Gaps = 41/413 (9%)
Query: 73  QVEDHSNRIANFFKSK-GLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHI 131
           ++ ++S + AN      GLQRGD VA+ +   PE+  + LG  + G++        +   
Sbjct: 78  ELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTD 137
Query: 132 LIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELP 191
           +++ +++++ KAI+ G E+ + +  V    P + +    + +      L    LL+E   
Sbjct: 138 ILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEKSCDG-WLNFKKLLNE--- 193
Query: 192 EVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDV 251
                S T    +    +  A  +TSGT+GLPK A  ++      A      TGL + D+
Sbjct: 194 ----ASTTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDAGWTGLQASDI 249
Query: 252 VYTT--LPLYHTAXXXXXXXXXXXXXSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCR 309
           ++T                       + V +  KF      K    Y   +   +G    
Sbjct: 250 MWTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSY--PIKSMMGAPIV 307
Query: 310 YLLAVPE-----KPEDTQHSVKMMIGNGLRPQVWEPFQKRFGLDRICEFYGATEGNANLM 364
           Y + + +     K    Q+ V   +G  L P+  E ++ + GLD I E YG TE     M
Sbjct: 308 YRMLLQQDLSSYKFPHLQNCVT--VGESLLPETLENWRAQTGLD-IRESYGQTETGLTCM 364
Query: 365 NADGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKES 424
            +       GY+   A   Y V +I           +K  +  P    + GI    +K  
Sbjct: 365 VSKTMKIKPGYMG-TAASCYDVQIID----------DKGNVLPPGTEGDIGI---RVKPI 410
Query: 425 RAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGD 477
           R    F+GY D        +R  +      +  GD  IKD+  YF F  R  D
Sbjct: 411 RPIGIFSGYVDNPDKTAANIRGDF------WLLGDRGIKDEDGYFQFMGRADD 457

>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In Complex With Amp Length = 663

Iteration: 1
 Score = 59.3 bits (142), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 93/432 (21%), Positives = 156/432 (36%), Gaps = 74/432 (17%)
Query: 87  SKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVAECKAII- 145
           S G+++GD VA++M   PE +   L +S+IG + + +      + L   I   + K +I 
Sbjct: 133 SMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVIT 192
Query: 146 -----YGAELSEALTEVKDSI---PGIS--LYAAGTRRKPQAKVLPSTTLLDEELPEVSA 195
                 G ++ E    V D++   PG+   L    T     A   P       E  +   
Sbjct: 193 TDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVAFHAPRDLDWATEKKKYKT 252
Query: 196 KSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFM---AISGRYQTGLTSDDVV 252
             P   +    P   L  +YTSG+TG PK   + H  A ++    ++ RY      +DV 
Sbjct: 253 YYPCTPVDSEDP---LFLLYTSGSTGAPKG--VQHSTAGYLLGALLTMRYTFDTHQEDVF 307
Query: 253 YTTLPL-YHTAXXXXXXXXXXXXXSTVVIRSKFSASNF--WKDCIKYNCTVAQYIGEMCR 309
           +T   + + T              +T+V     +  N+  + D I  +     Y+     
Sbjct: 308 FTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTAL 367
Query: 310 YLLAVPEKPEDTQHSVKMM-----IGNGLRPQVWEPFQKRFGLDR--ICEFYGATEGNAN 362
            LL          HS+K +     +G  +  +VWE + ++ G +   I + Y  TE  ++
Sbjct: 368 RLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSH 427
Query: 363 LMNADGKVGAVGYIPY----IAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILI 418
           L+       A G  P      + PF+ +  +  DP T E +                   
Sbjct: 428 LVTP----LAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNT----------------- 466
Query: 419 GMIKESRAESHFNGYADKKASEKKILRNVYSHGDAAFN-----------TGDILIKDKFQ 467
                    SH  G    KA+     R ++ + D   +           TGD   KDK  
Sbjct: 467 ---------SHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDG 517
Query: 468 YFYFKDRTGDAC 479
           Y +   R  D  
Sbjct: 518 YIWILGRVDDVV 529

>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas Palustris Length = 503

Iteration: 1
 Score = 59.3 bits (142), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 100/409 (24%), Positives = 150/409 (36%), Gaps = 55/409 (13%)
Query: 78  SNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIK 137
           + R+AN   ++GLQ GD VA   E   E + ++L   + G V   +NT    H L + I 
Sbjct: 38  AGRVANVLVARGLQVGDRVAAQTEXSVEALVLYLATVRAGGVYLPLNTAYTLHELDYFIT 97
Query: 138 VAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRK--PQAKVLPSTTLLDEELPEVSA 195
            AE   ++            +D I  I+     T     P  +           L + +A
Sbjct: 98  DAEPXIVVCDP-------SXRDGIAAIAAXVGATVETLGPDGR---------GSLTDAAA 141
Query: 196 KSPTEDIKKNKPSDKLAYI-YTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYT 254
            +       ++ +D LA I YTSGTTG    A+++H      +++       T DDV+  
Sbjct: 142 GASEAFATIDRGADDLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYWRFTPDDVLIH 201
Query: 255 TLPLYHTAXXXXXXXXXXXXXSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAV 314
            LP+YHT               +++    F         +    TV   +      LL  
Sbjct: 202 ALPIYHTHGLFVASNVTLFARGSMIFLPXFDPDXILD--LMARATVLMGVPTFYTRLLQS 259
Query: 315 PEKPEDTQHSVKMMIGNGLRPQVWEPFQKRFGL--DRICEFYGATEGNANLMN---ADGK 369
           P    +T   +++ I +G  P + +  ++        + E YG TE N N  N    D  
Sbjct: 260 PRLTXETTGHMRLFI-SGSAPLLADTHREWSAXTGHAVLERYGMTETNMNTSNPYDGDRV 318
Query: 370 VGAVGYIPYIAIPFYP-VGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAES 428
            GAVG       P  P V     DPET   +   D              IGMI E    +
Sbjct: 319 PGAVG-------PALPGVSARVTDPETGXELPRGD--------------IGMI-EVXGPN 356
Query: 429 HFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGD 477
            F GY           R+     D  F TGD+   D+  Y +   R  D
Sbjct: 357 VFXGYWRMPEXTXSEFRD-----DGFFITGDLGXIDERGYVHILGRGXD 400

>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Length = 503

Iteration: 1
 Score = 58.9 bits (141), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 100/409 (24%), Positives = 150/409 (36%), Gaps = 55/409 (13%)
Query: 78  SNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIK 137
           + R+AN   ++GLQ GD VA   E   E + ++L   + G V   +NT    H L + I 
Sbjct: 38  AGRVANVLVARGLQVGDRVAAQTEXSVEALVLYLATVRAGGVYLPLNTAYTLHELDYFIT 97
Query: 138 VAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRK--PQAKVLPSTTLLDEELPEVSA 195
            AE   ++            +D I  I+     T     P  +           L + +A
Sbjct: 98  DAEPXIVVCDP-------SXRDGIAAIAAXVGATVETLGPDGR---------GSLTDAAA 141
Query: 196 KSPTEDIKKNKPSDKLAYI-YTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYT 254
            +       ++ +D LA I YTSGTTG    A+++H      +++       T DDV+  
Sbjct: 142 GASEAFATIDRGADDLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYWRFTPDDVLIH 201
Query: 255 TLPLYHTAXXXXXXXXXXXXXSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAV 314
            LP+YHT               +++    F         +    TV   +      LL  
Sbjct: 202 ALPIYHTHGLFVASNVTLFARGSMIFLPXFDPDXILD--LMARATVLMGVPTFYTRLLQS 259
Query: 315 PEKPEDTQHSVKMMIGNGLRPQVWEPFQKRFGL--DRICEFYGATEGNANLMN---ADGK 369
           P    +T   +++ I +G  P + +  ++        + E YG TE N N  N    D  
Sbjct: 260 PRLTXETTGHMRLFI-SGSAPLLADTHREWSAXTGHAVLERYGMTETNMNTSNPYDGDRV 318
Query: 370 VGAVGYIPYIAIPFYP-VGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAES 428
            GAVG       P  P V     DPET   +   D              IGMI E    +
Sbjct: 319 PGAVG-------PALPGVSARVTDPETGXELPRGD--------------IGMI-EVXGPN 356
Query: 429 HFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGD 477
            F GY           R+     D  F TGD+   D+  Y +   R  D
Sbjct: 357 VFXGYWRMPEXTXSEFRD-----DGFFITGDLGXIDERGYVHILGRGXD 400

>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming Conformation Bound To Dlsa Length = 555

Iteration: 1
 Score = 58.9 bits (141), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 85/407 (20%), Positives = 152/407 (37%), Gaps = 39/407 (9%)
Query: 78  SNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIK 137
           S R+A   K  GL     + +  E   ++    LG   IGV  A  N    +  L++S+ 
Sbjct: 65  SVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMN 124
Query: 138 VAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKS 197
           +++   +    +  + +  V+  +P I        +          T +   LP     +
Sbjct: 125 ISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLP--PGFN 182
Query: 198 PTEDIKKNKPSDK-LAYIY-TSGTTGLPKAAVMTHVRAMFMAISGR---YQTGLTSDDVV 252
             + + ++   DK +A I  +SG+TGLPK   + H  A       R   +   +  D  +
Sbjct: 183 EYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAI 242
Query: 253 YTTLPLYHTAXXXXXXXXXXXXXSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLL 312
            + +P +H                 VV+  +F    F +    Y    A  +  +  +  
Sbjct: 243 LSVVPFHH-GFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFA 301
Query: 313 --AVPEKPEDTQHSVKMMIGNGLRPQVWEPFQKRFGLDRICEFYGATEGNANLM---NAD 367
              + +K + +        G  L  +V E   KRF L  I + YG TE  + ++     D
Sbjct: 302 KSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGD 361
Query: 368 GKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAE 427
            K GAVG +    +PF+   ++  D   +  +  +  LC+      P I+ G +    A 
Sbjct: 362 DKPGAVGKV----VPFFEAKVVDLDTGKTLGVNQRGELCV----RGPMIMSGYVNNPEAT 413
Query: 428 SHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDR 474
              N   DK               D   ++GDI   D+ ++F+  DR
Sbjct: 414 ---NALIDK---------------DGWLHSGDIAYWDEDEHFFIVDR 442

>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form) Length = 551

Iteration: 1
 Score = 58.9 bits (141), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 85/407 (20%), Positives = 152/407 (37%), Gaps = 39/407 (9%)
Query: 78  SNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIK 137
           S R+A   K  GL     + +  E   ++    LG   IGV  A  N    +  L++S+ 
Sbjct: 60  SVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMN 119
Query: 138 VAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKS 197
           +++   +    +  + +  V+  +P I        +          T +   LP     +
Sbjct: 120 ISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLP--PGFN 177
Query: 198 PTEDIKKNKPSDK-LAYIY-TSGTTGLPKAAVMTHVRAMFMAISGR---YQTGLTSDDVV 252
             + + ++   DK +A I  +SG+TGLPK   + H  A       R   +   +  D  +
Sbjct: 178 EYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAI 237
Query: 253 YTTLPLYHTAXXXXXXXXXXXXXSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLL 312
            + +P +H                 VV+  +F    F +    Y    A  +  +  +  
Sbjct: 238 LSVVPFHH-GFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFA 296
Query: 313 --AVPEKPEDTQHSVKMMIGNGLRPQVWEPFQKRFGLDRICEFYGATEGNANLM---NAD 367
              + +K + +        G  L  +V E   KRF L  I + YG TE  + ++     D
Sbjct: 297 KSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGD 356
Query: 368 GKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAE 427
            K GAVG +    +PF+   ++  D   +  +  +  LC+      P I+ G +    A 
Sbjct: 357 DKPGAVGKV----VPFFEAKVVDLDTGKTLGVNQRGELCV----RGPMIMSGYVNNPEAT 408
Query: 428 SHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDR 474
              N   DK               D   ++GDI   D+ ++F+  DR
Sbjct: 409 ---NALIDK---------------DGWLHSGDIAYWDEDEHFFIVDR 437

>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform Length = 550

Iteration: 1
 Score = 58.9 bits (141), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 85/407 (20%), Positives = 152/407 (37%), Gaps = 39/407 (9%)
Query: 78  SNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIK 137
           S R+A   K  GL     + +  E   ++    LG   IGV  A  N    +  L++S+ 
Sbjct: 60  SVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMN 119
Query: 138 VAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKS 197
           +++   +    +  + +  V+  +P I        +          T +   LP     +
Sbjct: 120 ISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLP--PGFN 177
Query: 198 PTEDIKKNKPSDK-LAYIY-TSGTTGLPKAAVMTHVRAMFMAISGR---YQTGLTSDDVV 252
             + + ++   DK +A I  +SG+TGLPK   + H  A       R   +   +  D  +
Sbjct: 178 EYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAI 237
Query: 253 YTTLPLYHTAXXXXXXXXXXXXXSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLL 312
            + +P +H                 VV+  +F    F +    Y    A  +  +  +  
Sbjct: 238 LSVVPFHH-GFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFA 296
Query: 313 --AVPEKPEDTQHSVKMMIGNGLRPQVWEPFQKRFGLDRICEFYGATEGNANLM---NAD 367
              + +K + +        G  L  +V E   KRF L  I + YG TE  + ++     D
Sbjct: 297 KSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGD 356
Query: 368 GKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAE 427
            K GAVG +    +PF+   ++  D   +  +  +  LC+      P I+ G +    A 
Sbjct: 357 DKPGAVGKV----VPFFEAKVVDLDTGKTLGVNQRGELCV----RGPMIMSGYVNNPEAT 408
Query: 428 SHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDR 474
              N   DK               D   ++GDI   D+ ++F+  DR
Sbjct: 409 ---NALIDK---------------DGWLHSGDIAYWDEDEHFFIVDR 437

>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1 Length = 506

Iteration: 1
 Score = 58.9 bits (141), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 100/409 (24%), Positives = 150/409 (36%), Gaps = 55/409 (13%)
Query: 78  SNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIK 137
           + R+AN   ++GLQ GD VA   E   E + ++L   + G V   +NT    H L + I 
Sbjct: 38  AGRVANVLVARGLQVGDRVAAQTEXSVEALVLYLATVRAGGVYLPLNTAYTLHELDYFIT 97
Query: 138 VAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRK--PQAKVLPSTTLLDEELPEVSA 195
            AE   ++            +D I  I+     T     P  +           L + +A
Sbjct: 98  DAEPXIVVCDP-------SXRDGIAAIAAXVGATVETLGPDGR---------GSLTDAAA 141
Query: 196 KSPTEDIKKNKPSDKLAYI-YTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYT 254
            +       ++ +D LA I YTSGTTG    A+++H      +++       T DDV+  
Sbjct: 142 GASEAFATIDRGADDLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYWRFTPDDVLIH 201
Query: 255 TLPLYHTAXXXXXXXXXXXXXSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAV 314
            LP+YHT               +++    F         +    TV   +      LL  
Sbjct: 202 ALPIYHTHGLFVASNVTLFARGSMIFLPXFDPDXILD--LMARATVLMGVPTFYTRLLQS 259
Query: 315 PEKPEDTQHSVKMMIGNGLRPQVWEPFQKRFGL--DRICEFYGATEGNANLMN---ADGK 369
           P    +T   +++ I +G  P + +  ++        + E YG TE N N  N    D  
Sbjct: 260 PRLTXETTGHMRLFI-SGSAPLLADTHREWSAXTGHAVLERYGMTETNMNTSNPYDGDRV 318
Query: 370 VGAVGYIPYIAIPFYP-VGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAES 428
            GAVG       P  P V     DPET   +   D              IGMI E    +
Sbjct: 319 PGAVG-------PALPGVSARVTDPETGXELPRGD--------------IGMI-EVXGPN 356
Query: 429 HFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGD 477
            F GY           R+     D  F TGD+   D+  Y +   R  D
Sbjct: 357 VFXGYWRMPEXTXSEFRD-----DGFFITGDLGXIDERGYVHILGRGXD 400

>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second Catalytic Conformation Length = 555

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 86/408 (21%), Positives = 155/408 (37%), Gaps = 41/408 (10%)
Query: 78  SNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIK 137
           S R+A   K  GL     + +  E   ++    LG   IGV  A  N    +  L++S+ 
Sbjct: 65  SVRLAEAMKRYGLNTNHRIVVSSENSLQFFMPVLGALFIGVAVAPANDCYNERELLNSMN 124
Query: 138 VAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKS 197
           +++   +    +  + +  V+  +P I        +          T +   LP     +
Sbjct: 125 ISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLP--PGFN 182
Query: 198 PTEDIKKNKPSDK-LAYIY-TSGTTGLPKAAVMTHVRAMFMAISGR----YQTGLTSDDV 251
             + + ++   DK +A I  +SG+TGLPK   + H RA+ +  S      +   +  D  
Sbjct: 183 EYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPH-RALAVRFSHARDPIFGNQIAPDTA 241
Query: 252 VYTTLPLYHTAXXXXXXXXXXXXXSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYL 311
           + + +P +H                 VV+  +F    F +    Y    A  +  +  +L
Sbjct: 242 ILSVVPFHH-GFGMFTTLGYLISGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFL 300
Query: 312 L--AVPEKPEDTQHSVKMMIGNGLRPQVWEPFQKRFGLDRICEFYGATEGNANLM---NA 366
               + +K + +        G  L  +V E   KRF L  I + YG TE  + ++     
Sbjct: 301 AKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPKG 360
Query: 367 DGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRA 426
           D K GAVG +    +PF+   ++  D   +  +  +  L +      P I+ G +    A
Sbjct: 361 DDKPGAVGKV----VPFFEAKVVDLDTGKTLGVNQRGELSV----RGPMIMSGYVNNPEA 412
Query: 427 ESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDR 474
               N   DK               D   ++GDI   D+ ++F+  DR
Sbjct: 413 T---NALIDK---------------DGWLHSGDIAYWDEDEHFFIVDR 442

>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8 Length = 541

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 90/441 (20%), Positives = 160/441 (36%), Gaps = 72/441 (16%)
Query: 63  TGAYKYTVTFQVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAF 122
           TG    T   +V   + R+    ++ G+  GD VA        ++  +  +  +G V   
Sbjct: 42  TGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHT 101
Query: 123 INTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPS 182
            N       + + +  AE K +++   L   +  ++  +  +  +     + P+  +   
Sbjct: 102 ANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPEGYLAYE 161
Query: 183 TTLLDE----ELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMF--- 235
             L +E     +PE +A                   YT+GTTGLPK  V +H RA+    
Sbjct: 162 EALGEEADPVRVPERAA---------------CGMAYTTGTTGLPKGVVYSH-RALVLHS 205
Query: 236 MAISGRYQTGLTSDDVVYTTLPLYHTAXXXXXXXXXXXXXSTVVIRSKFSASN----FWK 291
           +A S    T L+  DVV   +P++H                 V+   +   ++    F  
Sbjct: 206 LAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDG 265
Query: 292 DCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVK----MMIGNGLRPQVWEPFQKRFGL 347
           + + +   V      +  YL       E T H +K    +++G    P+      +R G+
Sbjct: 266 EGVTFTAGVPTVWLALADYL-------ESTGHRLKTLRRLVVGGSAAPRSLIARFERMGV 318
Query: 348 DRICEFYGATEGNANLMNADGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCI 407
           + + + YG TE +                P +   F    L     E    ++ K GL I
Sbjct: 319 E-VRQGYGLTETS----------------PVVVQNFVKSHLESLSEEEKLTLKAKTGLPI 361
Query: 408 PC----KAEEPGILIGMIKESRAESHFNG-------YADKKASEKKILRNVYSHGDAAFN 456
           P      A+E G  +    ++  E    G       Y +++A+   +        D  F 
Sbjct: 362 PLVRLRVADEEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTP------DGFFR 415
Query: 457 TGDILIKDKFQYFYFKDRTGD 477
           TGDI + D+  Y   KDR  D
Sbjct: 416 TGDIAVWDEEGYVEIKDRLKD 436

>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With Mgatp Length = 548

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 82/411 (19%), Positives = 151/411 (36%), Gaps = 43/411 (10%)
Query: 76  DHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHS 135
           + S  +    ++ GL     +AL  E   E+    +    IGV  A  N       L+HS
Sbjct: 60  EKSXXLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHS 119
Query: 136 IKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSA 195
           + +++   +    +  + +  V+ ++  I        +          T +    P    
Sbjct: 120 LGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQCLDTFIKRNTPPGFQ 179
Query: 196 KSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGR---YQTGLTSDDVV 252
            S  + ++ ++       + +SG+TGLPK   +TH   +      R   Y   ++    V
Sbjct: 180 ASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAV 239
Query: 253 YTTLPLYHTAXXXXXXXXXXXXXSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLL 312
            T +P +H                 VV+ +KF    F K    Y CT       +   L 
Sbjct: 240 LTVVPFHH-GFGMFTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVI----LVPTLF 294
Query: 313 AVPEKPE-----DTQHSVKMMIGNG-LRPQVWEPFQKRFGLDRICEFYGATEGNANLM-- 364
           A+  K E     D  + V++  G   L  +V E   +RF L  + + YG TE  + ++  
Sbjct: 295 AILNKSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIIT 354
Query: 365 -NADGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKE 423
              D K GA G +    +P +   +I  D + S     +  +C+                
Sbjct: 355 PEGDDKPGASGKV----VPLFKAKVIDLDTKKSLGPNRRGEVCV---------------- 394
Query: 424 SRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDR 474
            +      GY +   + K+++       +   +TGDI   D+ ++F+  DR
Sbjct: 395 -KGPMLMKGYVNNPEATKELIDE-----EGWLHTGDIGYYDEEKHFFIVDR 439

>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 82/411 (19%), Positives = 151/411 (36%), Gaps = 43/411 (10%)
Query: 76  DHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHS 135
           + S  +    ++ GL     +AL  E   E+    +    IGV  A  N       L+HS
Sbjct: 60  EKSCXLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHS 119
Query: 136 IKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSA 195
           + +++   +    +  + +  V+ ++  I        +          T +    P    
Sbjct: 120 LGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQCLDTFIKRNTPPGFQ 179
Query: 196 KSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGR---YQTGLTSDDVV 252
            S  + ++ ++       + +SG+TGLPK   +TH   +      R   Y   ++    V
Sbjct: 180 ASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAV 239
Query: 253 YTTLPLYHTAXXXXXXXXXXXXXSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLL 312
            T +P +H                 VV+ +KF    F K    Y CT       +   L 
Sbjct: 240 LTVVPFHH-GFGMFTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVI----LVPTLF 294
Query: 313 AVPEKPE-----DTQHSVKMMIGNG-LRPQVWEPFQKRFGLDRICEFYGATEGNANLM-- 364
           A+  K E     D  + V++  G   L  +V E   +RF L  + + YG TE  + ++  
Sbjct: 295 AILNKSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIIT 354
Query: 365 -NADGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKE 423
              D K GA G +    +P +   +I  D + S     +  +C+                
Sbjct: 355 PEGDDKPGASGKV----VPLFKAKVIDLDTKKSLGPNRRGEVCV---------------- 394
Query: 424 SRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDR 474
            +      GY +   + K+++       +   +TGDI   D+ ++F+  DR
Sbjct: 395 -KGPMLMKGYVNNPEATKELIDE-----EGWLHTGDIGYYDEEKHFFIVDR 439

>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Red-Color Emission S286n Mutant Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score = 55.5 bits (132), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 82/411 (19%), Positives = 151/411 (36%), Gaps = 43/411 (10%)
Query: 76  DHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHS 135
           + S  +    ++ GL     +AL  E   E+    +    IGV  A  N       L+HS
Sbjct: 60  EKSCXLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHS 119
Query: 136 IKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSA 195
           + +++   +    +  + +  V+ ++  I        +          T +    P    
Sbjct: 120 LGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQCLDTFIKRNTPPGYQ 179
Query: 196 KSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGR---YQTGLTSDDVV 252
            S  + ++ ++       + +SG+TGLPK   +TH   +      R   Y   ++    V
Sbjct: 180 ASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAV 239
Query: 253 YTTLPLYHTAXXXXXXXXXXXXXSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLL 312
            T +P +H                 VV+ +KF    F K    Y CT       +   L 
Sbjct: 240 LTVVPFHH-GFGMFTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTNVI----LVPTLF 294
Query: 313 AVPEKPE-----DTQHSVKMMIGNG-LRPQVWEPFQKRFGLDRICEFYGATEGNANLM-- 364
           A+  K E     D  + V++  G   L  +V E   +RF L  + + YG TE  + ++  
Sbjct: 295 AILNKSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIIT 354
Query: 365 -NADGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKE 423
              D K GA G +    +P +   +I  D + S     +  +C+                
Sbjct: 355 PEGDDKPGASGKV----VPLFKAKVIDLDTKKSLGPNRRGEVCV---------------- 394
Query: 424 SRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDR 474
            +      GY +   + K+++       +   +TGDI   D+ ++F+  DR
Sbjct: 395 -KGPMLMKGYVNNPEATKELIDE-----EGWLHTGDIGYYDEEKHFFIVDR 439

>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND To 4cb Length = 504

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 91/210 (43%), Gaps = 26/210 (12%)
Query: 81  IANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVAE 140
           +A    + GL+    VA+      + V   L L ++G V A +N           +K AE
Sbjct: 42  VAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPR---------LKSAE 92
Query: 141 CKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTE 200
              +I   E++ A+  V   +   +++ +G+     A+++    L+ +  P  S   P E
Sbjct: 93  LAELIKRGEMTAAVIAVGRQVAD-AIFQSGS----GARIIFLGDLVRDGEP-YSYGPPIE 146
Query: 201 DIKKNKPSDKLAYIYTSGTTGLPKAAVM----THVRAMFMAISGRYQTGLT--SDDVVYT 254
           D ++ +P+      YTSGTTGLPKAA++       R +FM+     Q GL     +VV  
Sbjct: 147 DPQR-EPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMST----QVGLRHGRHNVVLG 201
Query: 255 TLPLYHTAXXXXXXXXXXXXXSTVVIRSKF 284
            +PLYH                T V+  +F
Sbjct: 202 LMPLYHVVGFFAVLVAALALDGTYVVVEEF 231

>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION, BOUND TO 3- Chlorobenzoate Length = 504

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 91/210 (43%), Gaps = 26/210 (12%)
Query: 81  IANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVAE 140
           +A    + GL+    VA+      + V   L L ++G V A +N           +K AE
Sbjct: 42  VAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPR---------LKSAE 92
Query: 141 CKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTE 200
              +I   E++ A+  V   +   +++ +G+     A+++    L+ +  P  S   P E
Sbjct: 93  LAELIKRGEMTAAVIAVGRQVAD-AIFQSGS----GARIIFLGDLVRDGEP-YSYGPPIE 146
Query: 201 DIKKNKPSDKLAYIYTSGTTGLPKAAVM----THVRAMFMAISGRYQTGLT--SDDVVYT 254
           D ++ +P+      YTSGTTGLPKAA++       R +FM+     Q GL     +VV  
Sbjct: 147 DPQR-EPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMST----QVGLRHGRHNVVLG 201
Query: 255 TLPLYHTAXXXXXXXXXXXXXSTVVIRSKF 284
            +PLYH                T V+  +F
Sbjct: 202 LMPLYHVVGFFAVLVAALALDGTYVVVEEF 231

>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION, BOUND TO 3- Chlorobenzoate Length = 504

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 91/210 (43%), Gaps = 26/210 (12%)
Query: 81  IANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVAE 140
           +A    + GL+    VA+      + V   L L ++G V A +N           +K AE
Sbjct: 42  VAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPR---------LKSAE 92
Query: 141 CKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTE 200
              +I   E++ A+  V   +   +++ +G+     A+++    L+ +  P  S   P E
Sbjct: 93  LAELIKRGEMTAAVIAVGRQVAD-AIFQSGS----GARIIFLGDLVRDGEP-YSYGPPIE 146
Query: 201 DIKKNKPSDKLAYIYTSGTTGLPKAAVM----THVRAMFMAISGRYQTGLT--SDDVVYT 254
           D ++ +P+      YTSGTTGLPKAA++       R +FM+     Q GL     +VV  
Sbjct: 147 DPQR-EPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMST----QVGLRHGRHNVVLG 201
Query: 255 TLPLYHTAXXXXXXXXXXXXXSTVVIRSKF 284
            +PLYH                T V+  +F
Sbjct: 202 LMPLYHVVGFFAVLVAALALDGTYVVVEEF 231

>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chlorobenzoate Length = 504

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 91/210 (43%), Gaps = 26/210 (12%)
Query: 81  IANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVAE 140
           +A    + GL+    VA+      + V   L L ++G V A +N           +K AE
Sbjct: 42  VAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPR---------LKSAE 92
Query: 141 CKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTE 200
              +I   E++ A+  V   +   +++ +G+     A+++    L+ +  P  S   P E
Sbjct: 93  LAELIKRGEMTAAVIAVGRQVAD-AIFQSGS----GARIIFLGDLVRDGEP-YSYGPPIE 146
Query: 201 DIKKNKPSDKLAYIYTSGTTGLPKAAVM----THVRAMFMAISGRYQTGLT--SDDVVYT 254
           D ++ +P+      YTSGTTGLPKAA++       R +FM+     Q GL     +VV  
Sbjct: 147 DPQR-EPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMST----QVGLRHGRHNVVLG 201
Query: 255 TLPLYHTAXXXXXXXXXXXXXSTVVIRSKF 284
            +PLYH                T V+  +F
Sbjct: 202 LMPLYHVVGFFAVLVAALALDGTYVVVEEF 231

>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cba-adenylate Length = 504

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 86/186 (46%), Gaps = 26/186 (13%)
Query: 81  IANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVAE 140
           +A    + GL+    VA+      + V   L L ++G V A +N           +K AE
Sbjct: 42  VAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPR---------LKSAE 92
Query: 141 CKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTE 200
              +I   E++ A+  V   +   +++ +G+     A+++    L+ +  P  S   P E
Sbjct: 93  LAELIKRGEMTAAVIAVGRQVAD-AIFQSGS----GARIIFLGDLVRDGEP-YSYGPPIE 146
Query: 201 DIKKNKPSDKLAYIYTSGTTGLPKAAVM----THVRAMFMAISGRYQTGLT--SDDVVYT 254
           D ++ +P+      YTSGTTGLPKAA++       R +FM+     Q GL     +VV  
Sbjct: 147 DPQR-EPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMST----QVGLRHGRHNVVLG 201
Query: 255 TLPLYH 260
            +PLYH
Sbjct: 202 LMPLYH 207

>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris Turkestanicus Luciferase Length = 582

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 82/405 (20%), Positives = 144/405 (35%), Gaps = 38/405 (9%)
Query: 80  RIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVA 139
           R+A   K  GL     +A+  E   ++     G   IGV  A  N    +  L +S+ ++
Sbjct: 96  RLAETMKRYGLGLQHHIAVCSENSLQFFMPVCGALFIGVGVAPTNDIYNERELYNSLSIS 155
Query: 140 ECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPT 199
           +   +       + +  V+  +P I        R+         + ++  LP    +   
Sbjct: 156 QPTIVFCSKRALQKILGVQKKLPIIQKIVILDSREDYMGKQSMYSFIESHLPAGFNEYDY 215
Query: 200 EDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGR---YQTGLTSDDVVYTTL 256
                ++ +     + +SG+TGLPK   +TH          R   +   +  D  + T +
Sbjct: 216 IPDSFDRETATALIMNSSGSTGLPKGVELTHKNICVRFSHCRDPVFGNQIIPDTAILTVI 275
Query: 257 PLYHTAXXXXXXXXXXXXXSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLA--- 313
           P +H                 +V+  +F    F +    Y    A  +  +  +      
Sbjct: 276 PFHH-GFGMFTTLGYLTCGFRIVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTL 334
Query: 314 VPEKPEDTQHSVKMMIGNGLRPQVWEPFQKRFGLDRICEFYGATEGNANLM----NADGK 369
           V +      H +    G  L  +V E   KRF L  I + YG TE  + ++      D K
Sbjct: 335 VDKYDLSNLHEIASG-GAPLAKEVGEAVAKRFKLPGIRQGYGLTETTSAIIITPRGRDDK 393
Query: 370 VGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESH 429
            GA G +    +PF+   ++  D   +  +  +  LC+    + P I+ G +    A S 
Sbjct: 394 PGACGKV----VPFFSAKIVDLDTGKTLGVNQRGELCV----KGPMIMKGYVNNPEATSA 445
Query: 430 FNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDR 474
                DK               D   ++GDI   DK  YF+  DR
Sbjct: 446 L---IDK---------------DGWLHSGDIAYYDKDGYFFIVDR 472

>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From Burkholderia Xenovorans Lb400 Length = 529

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 66/309 (21%), Positives = 127/309 (41%), Gaps = 16/309 (5%)
Query: 73  QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHIL 132
           ++E+ + R A+  ++ G+   + + L M         +LG    GVV    NT       
Sbjct: 53  ELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPVVANTLLTPADY 112
Query: 133 IHSIKVAECKAIIYGAELSEALTEVKDSIP--GISLYAAGTRRKPQAKVLPSTTLLDEEL 190
           ++ +  +  +A+I    L + +T+  +S    G  L  +  R        P    L EEL
Sbjct: 113 VYMLTHSHARAVIASGALVQNVTQALESAEHDGCQLIVSQPRESE-----PRLAPLFEEL 167
Query: 191 PEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMA-ISGRYQTGLTSD 249
             + A +P          D   ++Y+SG+TG PK  V TH    + A +  +   G+  +
Sbjct: 168 --IDAAAPAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAEN 225
Query: 250 DVVYTTLPLYHTAXXXXXXXXXXXXXSTVVIRS-KFSASNFWKDCIKYNCTVAQYIGEMC 308
           DVV++   L+                +T ++ + + +A   +   +++  TV   +  + 
Sbjct: 226 DVVFSAAKLFFAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLY 285
Query: 309 RYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFYGATEGNANLMNA 366
             +L  P  P     ++++    G  L  ++ E F   FG + I +  G+TE     ++ 
Sbjct: 286 ANMLVSPNLPARADVAIRICTSAGEALPREIGERFTAHFGCE-ILDGIGSTEMLHIFLS- 343
Query: 367 DGKVGAVGY 375
             + GAV Y
Sbjct: 344 -NRAGAVEY 351

>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SELENOMETHIONINE Length = 504

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 81/182 (44%), Gaps = 18/182 (9%)
Query: 81  IANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVAE 140
           +A    + GL+    VA+      + V   L L ++G V A +N           +K AE
Sbjct: 42  VAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPR---------LKSAE 92
Query: 141 CKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTE 200
              +I   E + A+  V   +   +++ +G+     A+++    L+ +  P  S   P E
Sbjct: 93  LAELIKRGEXTAAVIAVGRQVAD-AIFQSGS----GARIIFLGDLVRDGEP-YSYGPPIE 146
Query: 201 DIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLT--SDDVVYTTLPL 258
           D ++ +P+      YTSGTTGLPKAA++    A    +    Q GL     +VV    PL
Sbjct: 147 DPQR-EPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFXSTQVGLRHGRHNVVLGLXPL 205
Query: 259 YH 260
           YH
Sbjct: 206 YH 207

>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With Methylmalonyl-Coa And Amp Bound Length = 505

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 82/331 (24%), Positives = 126/331 (38%), Gaps = 51/331 (15%)
Query: 157 VKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTEDIKKNKPSDKLAYIYT 216
           + DS P + L        P A++ P+   L+    +V A+    +   +   D    +YT
Sbjct: 111 LSDSAPSLVLA------PPDAELPPALGALERVDVDVRARGAVPEDGADD-GDPALVVYT 163
Query: 217 SGTTGLPKAAVMTHVRAM---FMAISGRYQTGLTSDDVVYTTLPLYHTAXXXXXXXXXXX 273
           SGTTG PK AV+   RA+     A++  +Q   T +DV+   LPL+H             
Sbjct: 164 SGTTGPPKGAVIPR-RALATTLDALADAWQ--WTGEDVLVQGLPLFHVHGLVLGILGPLR 220
Query: 274 XXSTVVIRSKFS---ASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMIG 330
              +V    +FS   A+    D       V      +   L A PE  +    +  ++ G
Sbjct: 221 RGGSVRHLGRFSTEGAARELNDGATMLFGVPTMYHRIAETLPADPELAKALAGARLLVSG 280
Query: 331 NGLRP-QVWEPFQKRFGLDRICEFYGATEGNANLMN----ADG--KVGAVGYIPYIAIPF 383
           +   P    E      G  R+ E YG TE    LMN    ADG  + G VG    + +P 
Sbjct: 281 SAALPVHDHERIAAATG-RRVIERYGMTE---TLMNTSVRADGEPRAGTVG----VPLPG 332
Query: 384 YPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNGYADKKASEKKI 443
             + L++   E   PI   DG             +G I + R  + F  Y ++  +    
Sbjct: 333 VELRLVE---EDGTPIAALDGES-----------VGEI-QVRGPNLFTEYLNRPDATAAA 377
Query: 444 LRNVYSHGDAAFNTGDILIKDKFQYFYFKDR 474
                   D  F TGD+ ++D   Y     R
Sbjct: 378 FTE-----DGFFRTGDMAVRDPDGYVRIVGR 403

>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A Nonribosomal Peptide Synthetase Termination Module Length = 1304

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 67/163 (41%), Gaps = 32/163 (19%)
Query: 73  QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHIL 132
           ++++ +NRIA   +  G  +G  VAL+ +   E V   LG+ K G     ++    +  +
Sbjct: 494 ELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAGAAYLPVDPKLPEDRI 553
Query: 133 IHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLP--STTLL--DE 188
            + +  +    ++   E+ E                       QA  LP   TTL   D+
Sbjct: 554 SYMLADSAAACLLTHQEMKE-----------------------QAAELPYTGTTLFIDDQ 590
Query: 189 ELPEVSAKSPTEDIKKNKPSDKLAYI-YTSGTTGLPKAAVMTH 230
              E  A  P   I  N P    AYI YTSGTTG PK  + TH
Sbjct: 591 TRFEEQASDPATAIDPNDP----AYIMYTSGTTGKPKGNITTH 629

>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate Ligases From E. Coli And L. Pneumophila Length = 583

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 56/187 (29%), Positives = 78/187 (41%), Gaps = 38/187 (20%)
Query: 87  SKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFI----NTNQRQHILIHSIKV---- 138
           S  L++GD VAL  E   E+V  +      G+VA  +       QR      S K+    
Sbjct: 67  SLNLKKGDRVALIAETSSEFVEAFFACQYAGLVAVPLAIPXGVGQRDS---WSAKLQGLL 123
Query: 139 AECK--AIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAK 196
           A C+  AII G E              + L  A T   P+  VL       + LPE    
Sbjct: 124 ASCQPAAIITGDEW-------------LPLVNAATHDNPELHVLSHAWF--KALPEADVA 168
Query: 197 SPTEDIKKNKPSDKLAYI-YTSGTTGLPKAAVMTH--VRAMFMAISGRYQTGLTSDDVVY 253
                +++  P+D +AY+ YTSG+T  P+  ++TH  V A   AIS      L   D   
Sbjct: 169 -----LQRPVPND-IAYLQYTSGSTRFPRGVIITHREVXANLRAIS-HDGIKLRPGDRCV 221
Query: 254 TTLPLYH 260
           + LP YH
Sbjct: 222 SWLPFYH 228

>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase (Fadd1) From Archaeoglobus Fulgidus Length = 549

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/185 (22%), Positives = 74/185 (40%), Gaps = 12/185 (6%)
Query: 78  SNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIK 137
           + ++A+    KG+++G+ V + +    +YV     L ++      IN   +   L H + 
Sbjct: 62  TKKLASGISRKGVRKGEHVGVCIPNSIDYVXTIYALWRVAATPVPINPXYKSFELEHILN 121
Query: 138 VAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKS 197
            +E   ++  + L E    V +      ++  G      ++V  S +             
Sbjct: 122 DSEATTLVVHSXLYENFKPVLEKTGVERVFVVGGEVNSLSEVXDSGS------------E 169
Query: 198 PTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLP 257
             E++K N   D     YT GTTG PK   +TH      A+     TGL+  D +    P
Sbjct: 170 DFENVKVNPEEDVALIPYTGGTTGXPKGVXLTHFNLAANALQLAVATGLSHXDTIVGCXP 229
Query: 258 LYHTA 262
            +H+A
Sbjct: 230 XFHSA 234

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	479
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	8e-54
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	4e-47
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	2e-43
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	2e-43
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	1e-42
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	3e-41
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	1e-39
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	3e-39
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	3e-39
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	6e-39
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	8e-39
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	1e-38
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	3e-35
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	7e-35
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	7e-34
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	4e-33
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	6e-33
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	3e-20
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	7e-20
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	1e-18
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	6e-16
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	1e-13
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	4e-13
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	2e-12
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	3e-12
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	6e-10
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	5e-09
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	6e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-09
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	6e-07

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529

 Score =  187 bits (478), Expect = 8e-54
 Identities = 76/417 (18%), Positives = 154/417 (36%), Gaps = 42/417 (10%)

Query: 69  TVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQ 127
           + T+ ++E+ + R A+  ++ G+   + + L M         +LG    GVV    NT  
Sbjct: 48  STTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPVVANTLL 107

Query: 128 RQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLD 187
                ++ +  +  +A+I    L + +T+  +S          ++  P+        L +
Sbjct: 108 TPADYVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQLIVSQ--PRESEPRLAPLFE 165

Query: 188 EELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMA-ISGRYQTGL 246
           E +    A +P          D   ++Y+SG+TG PK  V TH    + A +  +   G+
Sbjct: 166 ELI---DAAAPAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGI 222

Query: 247 TSDDVVYTTLPLYHTAGGLLGIGQCLL-GGSTVVIRSKFSASNFWKDCIKYNCTVAQYIG 305
             +DVV++   L+   G   G+   L  G + +++  + +A   +   +++  TV   + 
Sbjct: 223 AENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVP 282

Query: 306 EMCRYLLAVPEKPEDTQHSVKMMIGNG--LRPQVWEPFQKRFGLDRICEFYGATEGNANL 363
            +   +L  P  P     ++++    G  L  ++ E F   FG   I +  G+TE     
Sbjct: 283 TLYANMLVSPNLPARADVAIRICTSAGEALPREIGERFTAHFGC-EILDGIGSTEMLHIF 341

Query: 364 MNA---DGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGM 420
           ++      + G  G      +P Y + L   D                    E G L   
Sbjct: 342 LSNRAGAVEYGTTG----RPVPGYEIELR--DEAGHA-----------VPDGEVGDLY-- 382

Query: 421 IKESRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGD 477
               +  S    Y + +   +      +        +GD   +     + +  R+ D
Sbjct: 383 ---IKGPSAAVMYWNNREKSRATFLGEW------IRSGDKYCRLPNGCYVYAGRSDD 430

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503

 Score =  169 bits (430), Expect = 4e-47
 Identities = 97/421 (23%), Positives = 152/421 (36%), Gaps = 60/421 (14%)

Query: 69  TVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQ 127
            +++ ++   + R+AN   ++GLQ GD VA   E   E + ++L   + G V   +NT  
Sbjct: 28  KISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPLNTAY 87

Query: 128 RQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLD 187
             H L + I  AE K ++      + +  +   +                        L 
Sbjct: 88  TLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGATVETLGP----------DGRGSLT 137

Query: 188 EELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLT 247
           +     S    T D       D  A +YTSGTTG  K A+++H      +++       T
Sbjct: 138 DAAAGASEAFATIDRG---ADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWRFT 194

Query: 248 SDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTV-----AQ 302
            DDV+   LP+YHT G  +     L    +++   KF       D +    TV       
Sbjct: 195 PDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPKFDPDKIL-DLMA-RATVLMGVPTF 252

Query: 303 YIGEMCRYLLAVPEKPEDTQHSVKMMIGNG--LRPQVWEPFQKRFGLDRICEFYGATEGN 360
           Y       LL  P   ++T   +++ I     L       +  + G   + E YG TE N
Sbjct: 253 YTR-----LLQSPRLTKETTGHMRLFISGSAPLLADTHREWSAKTGH-AVLERYGMTETN 306

Query: 361 A---NLMNADGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPG-I 416
               N  + D   GAVG     A+P     +   DPET +               + G I
Sbjct: 307 MNTSNPYDGDRVPGAVG----PALPGVSARVT--DPETGK----------ELPRGDIGMI 350

Query: 417 LIGMIKESRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTG 476
            +      +  + F GY       K   R      D  F TGD+   D+  Y +   R  
Sbjct: 351 EV------KGPNVFKGYWRMPEKTKSEFR-----DDGFFITGDLGKIDERGYVHILGRGK 399

Query: 477 D 477
           D
Sbjct: 400 D 400

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570

 Score =  160 bits (407), Expect = 2e-43
 Identities = 95/431 (22%), Positives = 157/431 (36%), Gaps = 68/431 (15%)

Query: 69  TVTF-QVEDHSNRIANFFKSK-GLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTN 126
              F ++ ++S + AN      GLQRGD VA+ +   PE+  + LG  + G++       
Sbjct: 73  MWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQ 132

Query: 127 QRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGIS--LYAAGTRRKPQAKVLPSTT 184
            +   +++ +++++ KAI+ G E+ + +  V    P +   L  +               
Sbjct: 133 MKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEKSC-------DGWL 185

Query: 185 LLDEELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQT 244
              + L E S      +       +  A  +TSGT+GLPK A  ++      A      T
Sbjct: 186 NFKKLLNEASTTHHCVETG---SQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDAGWT 242

Query: 245 GLTSDDVVYTTLPL---YHTAGGLLGIGQCLLGGSTVVI--RSKFSASNFWKDCIKYNCT 299
           GL + D+++T        +    L+        G+   +    KF      K    Y   
Sbjct: 243 GLQASDIMWTISDTGWILNILCSLME---PWALGACTFVHLLPKFDPLVILKTLSSYPIK 299

Query: 300 VAQYIGEMC------RYLLAVPEKPEDTQHSVKMMIGNG--LRPQVWEPFQKRFGLDRIC 351
                  M       R LL            ++  +  G  L P+  E ++ + GLD I 
Sbjct: 300 S------MMGAPIVYRMLLQQDLSSYKFP-HLQNCVTVGESLLPETLENWRAQTGLD-IR 351

Query: 352 EFYGATEGN---ANLMNADGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDG-LCI 407
           E YG TE             K G +G     A   Y V +I  D + +      +G + I
Sbjct: 352 ESYGQTETGLTCMVSKTMKIKPGYMGT----AASCYDVQII--DDKGNVLPPGTEGDIGI 405

Query: 408 PCKAEEPGILIGMIKESRAESHFNGY-ADKKASEKKILRNVYSHGDAAFNTGDILIKDKF 466
             K   P   IG+         F+GY  +   +   I  + +         GD  IKD+ 
Sbjct: 406 RVKPIRP---IGI---------FSGYVDNPDKTAANIRGDFW-------LLGDRGIKDED 446

Query: 467 QYFYFKDRTGD 477
            YF F  R  D
Sbjct: 447 GYFQFMGRADD 457

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509

 Score =  159 bits (404), Expect = 2e-43
 Identities = 74/442 (16%), Positives = 151/442 (34%), Gaps = 75/442 (16%)

Query: 52  LFVRTIREVPMTGAYKY---TVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYV 107
           ++ R     P   A+      +T       + R+A+     G+  GD VA+  +   E +
Sbjct: 11  VYRRNAALFPDRTAFMVDGVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMI 70

Query: 108 CMWLGLSKIGVVAAFINTNQR----QHILIHSIKVAECKAIIYGAELSEALTEVKDSIPG 163
            +   ++ IG +   +N          +L           ++ G +  + +  V  S+ G
Sbjct: 71  ELIGAVALIGAILLPVNYRLNADEIAFVLGDG----APSVVVAGTDYRDIVAGVLPSLGG 126

Query: 164 ISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLP 223
           +               +   +       ++++ +P    +    +D    I+T+   G P
Sbjct: 127 VKKAY----------AIGDGSGPFAPFKDLASDTPFSAPEFG-AADGFVIIHTAAVGGRP 175

Query: 224 KAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSK 283
           + A+++    +    S      LT  DV    LPL+H  G  L +     GG++V+   K
Sbjct: 176 RGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIAA-K 234

Query: 284 FSASNFWKDCIKYNCTVAQYIGEMCRYLLAVP-------EKPEDTQHS-VKMMIGNGLRP 335
           F  +   +D   +  TV          +           ++    Q + ++ + G    P
Sbjct: 235 FDPAQAARDIEAHKVTV----------MAEFAPMLGNILDQAAPAQLASLRAVTG-LDTP 283

Query: 336 QVWEPFQKRFGLDRICEFYGATE--GNANLMNADGKVGAVGYIPYIAIPFYPVGLIKCDP 393
           +  E F+           +G +E  G +       +  + G      + +  V ++  D 
Sbjct: 284 ETIERFEATCPNATFWATFGQSETSGLSTFAPYRDRPKSAG----RPLFWRTVAVV--DA 337

Query: 394 ETSEPIRNKDGLCIPCKAEEPG-ILIGMIKESRAESHFNGYADKKASEKKILRNVYSHGD 452
           E                  E G I++      R  + F GY +  A+ +   RN +    
Sbjct: 338 EDRP-----------LPPGEVGEIVL------RGPTVFKGYWNNAAATQHAFRNGW---- 376

Query: 453 AAFNTGDILIKDKFQYFYFKDR 474
              +TGD+   D   Y ++  R
Sbjct: 377 --HHTGDMGRFDADGYLFYAGR 396

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517

 Score =  156 bits (398), Expect = 1e-42
 Identities = 77/323 (23%), Positives = 123/323 (38%), Gaps = 42/323 (13%)

Query: 69  TVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQ 127
            +T+ Q+   +NR A+   + G+ +GD VAL M    E+ C++ G +K+G VA  INT  
Sbjct: 43  RMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRL 102

Query: 128 R----QHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPST 183
                  IL  S      K +IYGA  +  +  ++                         
Sbjct: 103 AAPEVSFILSDS----GSKVVIYGAPSAPVIDAIRAQADPPGTVTDW----------IGA 148

Query: 184 TLLDEELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQ 243
             L E L   +A  P  +       D L  +YTSGTTG PK  V TH      A S    
Sbjct: 149 DSLAERLRSAAADEPAVECG---GDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWAST 205

Query: 244 TGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTV--- 300
             +   D +   LP++H A     I   + G  T++   +F A+  W   ++    +   
Sbjct: 206 IDVRYRDRLLLPLPMFHVAALTTVIFSAMRGV-TLISMPQFDATKVWSLIVEERVCIGGA 264

Query: 301 --AQYIGEMCRYLLAVPEKPEDTQHSVKMMIGNG--LRPQVWEPFQKRFGLDRICEFYGA 356
             A         +  VPE  E      +  I  G  +   + + +  +     + + Y  
Sbjct: 265 VPAILNF-----MRQVPEFAELDAPDFRYFITGGAPMPEALIKIYAAKNI--EVVQGYAL 317

Query: 357 TE--GNANLMNAD---GKVGAVG 374
           TE  G   L+ ++    K G+ G
Sbjct: 318 TESCGGGTLLLSEDALRKAGSAG 340

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505

 Score =  153 bits (388), Expect = 3e-41
 Identities = 81/420 (19%), Positives = 134/420 (31%), Gaps = 76/420 (18%)

Query: 69  TVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQ 127
           ++T+ ++   +   A       +     VA++     E     +     GV A  +N   
Sbjct: 48  SLTYAELAAAAGATAG-----RIGGAGRVAVWATPAMETGVAVVAALLAGVAAVPLNPKS 102

Query: 128 RQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLD 187
               L H +  +    ++   +                         P    L    +  
Sbjct: 103 GDKELAHILSDSAPSLVLAPPDAELP---------------------PALGALERVDVDV 141

Query: 188 EELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLT 247
                V      +        D    +YTSGTTG PK AV+          +       T
Sbjct: 142 RARGAVPEDGADDG-------DPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWT 194

Query: 248 SDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTV-----AQ 302
            +DV+   LPL+H  G +LGI   L  G +V    +FS        +    T+       
Sbjct: 195 GEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRFSTEGAA-RELNDGATMLFGVPTM 253

Query: 303 YIGEMCRYLLAVPEKPEDTQHSVKMMIGNG--LRPQVWEPFQKRFGLDRICEFYGATEGN 360
           Y   +   L A PE  +      ++++     L     E      G  R+ E YG TE  
Sbjct: 254 YHR-IAETLPADPELAKALA-GARLLVSGSAALPVHDHERIAAATGR-RVIERYGMTETL 310

Query: 361 ANL-MNADG--KVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPG-I 416
            N  + ADG  + G VG    + +P   + L+  + + +               E  G I
Sbjct: 311 MNTSVRADGEPRAGTVG----VPLPGVELRLV--EEDGTP--------IAALDGESVGEI 356

Query: 417 LIGMIKESRAESHFNGYADK-KASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRT 475
            +      R  + F  Y ++  A+            D  F TGD+ ++D   Y     R 
Sbjct: 357 QV------RGPNLFTEYLNRPDATAAAFTE------DGFFRTGDMAVRDPDGYVRIVGRK 404

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501

 Score =  148 bits (377), Expect = 1e-39
 Identities = 55/322 (17%), Positives = 107/322 (33%), Gaps = 33/322 (10%)

Query: 69  TVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQ 127
           + T+  +   ++ +A         +   V L+++   + + +        +  A INT  
Sbjct: 26  SYTYQNLYCEASLLAKRL---KAYQQSRVGLYIDNSIQSIILIHACWLANIEIAMINTRL 82

Query: 128 RQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLD 187
             + + + ++  + + I     L     ++  S+  I                       
Sbjct: 83  TPNEMTNQMRSIDVQLIFCTLPLELRGFQIV-SLDDIEFAGRDITTNGLLDNTMGIQYDT 141

Query: 188 EELPEVSAKSPTEDIKKNKPSDKLAYI-YTSGTTGLPKAAVMTHVRAMFMAISGRYQTGL 246
                V  +SP+  +  +   D +A I +TSGTTG  KA   T       AI  +   G 
Sbjct: 142 SNETVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGF 201

Query: 247 TSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQYIGE 306
             D    + LP+YH +G  + +   ++ G TV I  KF+A            T       
Sbjct: 202 DRDTNWLSVLPIYHISGLSVLLR-AVIEGFTVRIVDKFNAEQILTMIKNERITH------ 254

Query: 307 MCRYLLAVP-------EKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFYGAT 357
               +  VP       ++     ++++ ++  G  L   + E   +      I   +G T
Sbjct: 255 ----ISLVPQTLNWLMQQGLHEPYNLQKILLGGAKLSATMIETALQYNL--PIYNSFGMT 308

Query: 358 E--GNANLMN---ADGKVGAVG 374
           E               +   VG
Sbjct: 309 ETCSQFLTATPEMLHARPDTVG 330

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549

 Score =  148 bits (376), Expect = 3e-39
 Identities = 81/425 (19%), Positives = 158/425 (37%), Gaps = 58/425 (13%)

Query: 69  TVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQ 127
           ++ F ++ + + ++A+    KG+++G+ V + +    +YV     L ++      IN   
Sbjct: 52  SMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVMTIYALWRVAATPVPINPMY 111

Query: 128 RQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLD 187
           +   L H +  +E   ++  + L E    V +      ++  G      ++V+ S     
Sbjct: 112 KSFELEHILNDSEATTLVVHSMLYENFKPVLEKTGVERVFVVGGEVNSLSEVMDSG---S 168

Query: 188 EELPEVSAKSPTEDIKKNKPSDKLAYI-YTSGTTGLPKAAVMTHVRAMFMAISGRYQTGL 246
           E+   V   +P ED         +A I YT GTTG+PK  ++TH      A+     TGL
Sbjct: 169 EDFENVKV-NPEED---------VALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGL 218

Query: 247 TSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQYIGE 306
           +  D +   +P++H +     +   +  G+  V+   F+     ++  KY  T +  +  
Sbjct: 219 SHMDTIVGCMPMFH-SAEFGLVNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPP 277

Query: 307 MCRYLLAVPEKPEDTQH--SVKMMIGNG--LRPQVWEPFQKRFGLD------RICEFYGA 356
               L+   E    T     +K+       + P + E   K           R  + +G 
Sbjct: 278 ALNVLVNTLESSNKTYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGM 337

Query: 357 TE----GNANLMNADGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPI-RNKDG-LCIPCK 410
           TE       N      K    G    + +    + +I    E    +   + G + I   
Sbjct: 338 TEACPMVTTNPPLRLDKSTTQG----VPMSDIELKVI--SLEDGRELGVGESGEIVI--- 388

Query: 411 AEEPGILIGMIKESRAESHFNGYADK-KASEKKILRNVYSHGDAAFNTGDILIKDKFQYF 469
                         R  + F GY  + K +++    +        F TGD+   D+  + 
Sbjct: 389 --------------RGPNIFKGYWKREKENQECWWYDEKGRK--FFRTGDVGFIDEEGFL 432

Query: 470 YFKDR 474
           +F+DR
Sbjct: 433 HFQDR 437

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504

 Score =  147 bits (374), Expect = 3e-39
 Identities = 65/341 (19%), Positives = 108/341 (31%), Gaps = 41/341 (12%)

Query: 52  LFVRTIREVPMTGAYKY-----TVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPE 105
           +  R     P   A         +T  ++      +A    + GL+    VA+      +
Sbjct: 7   MLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSAD 66

Query: 106 YVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGIS 165
            V   L L ++G V A +N   +   L   IK  E  A +      +    +  S  G  
Sbjct: 67  VVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGR-QVADAIFQSGSGAR 125

Query: 166 LYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTEDIKKNKPSDKLAYI-YTSGTTGLPK 224
           +   G   +          + D +                    + A+I YTSGTTGLPK
Sbjct: 126 IIFLGDLVRDGEPYSYGPPIEDPQREP----------------AQPAFIFYTSGTTGLPK 169

Query: 225 AAVMTH--VRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRS 282
           AA++      +  + +S +        +VV   +PLYH  G    +   L    T V+  
Sbjct: 170 AAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVE 229

Query: 283 KFSASNFWKDCIKYNCTV-----AQYIGEMCRYLLAVPEKPEDTQ--HSVKMMIGNG--L 333
           +F   +  +   +   T                L A       +    S++ +   G  +
Sbjct: 230 EFRPVDALQLVQQEQVTSLFATPTHLDA-----LAAAAAHAGSSLKLDSLRHVTFAGATM 284

Query: 334 RPQVWEPFQKRFGLDRICEFYGATEGNANLMNADGKVGAVG 374
              V E   +          YG TE   +L     K G   
Sbjct: 285 PDAVLETVHQHLPG-EKVNIYGTTEAMNSLYMRQPKTGTEM 324

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548

 Score =  147 bits (373), Expect = 6e-39
 Identities = 88/419 (21%), Positives = 165/419 (39%), Gaps = 44/419 (10%)

Query: 69  TVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQ 127
             ++ +  + S  +    ++ GL     +AL  E   E+    +    IGV  A  N   
Sbjct: 52  DYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIY 111

Query: 128 RQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLD 187
               L+HS+ +++   +    +  + +  V+ ++  I        +          T + 
Sbjct: 112 TLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQCLDTFIK 171

Query: 188 EELPEVSAKSPTEDIKKNKPSDKLAYI-YTSGTTGLPKAAVMTH---VRAMFMAISGRYQ 243
              P     S  + ++ +   +++A I  +SG+TGLPK   +TH   V     A    Y 
Sbjct: 172 RNTPPGFQASSFKTVEVD-RKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYG 230

Query: 244 TGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQY 303
             ++    V T +P +H   G+      L+ G  VV+ +KF    F K    Y CT    
Sbjct: 231 NQVSPGTAVLTVVPFHH-GFGMFTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVIL 289

Query: 304 IGEMCRYLLAVPEKPEDTQHSVKMMIGNG--LRPQVWEPFQKRFGLDRICEFYGATE-GN 360
           +  +   L       +    ++  +   G  L  +V E   +RF L  + + YG TE  +
Sbjct: 290 VPTLFAILNKSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTS 349

Query: 361 ANLMNADG--KVGAVGYIPYIAIPFYPVGLIKCDPETSEPI-RNKDG-LCIPCKAEEPGI 416
           A ++  +G  K GA G +    +P +   +I  D +T + +  N+ G +C+         
Sbjct: 350 AIIITPEGDDKPGASGKV----VPLFKAKVI--DLDTKKSLGPNRRGEVCV--------- 394

Query: 417 LIGMIKESRAESHFNGYA-DKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDR 474
                   +      GY  + +A+++ I    + H      TGDI   D+ ++F+  DR
Sbjct: 395 --------KGPMLMKGYVNNPEATKELIDEEGWLH------TGDIGYYDEEKHFFIVDR 439

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580

 Score =  147 bits (374), Expect = 8e-39
 Identities = 95/432 (21%), Positives = 163/432 (37%), Gaps = 64/432 (14%)

Query: 69  TVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPE-YVCMWLGLSKIGVVAAFINTN 126
             TF  ++ +S++ ANFF   G+ +GD V L ++ + + + CM LGL K+G +A      
Sbjct: 86  IFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCM-LGLHKLGAIAVPATHM 144

Query: 127 QRQHILIHSIKVAECKAII--YGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTT 184
            +   +++ I+ A  K I+     ++ E + E       I L  A          +    
Sbjct: 145 LKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGGDVLEGWIDFRK 204

Query: 185 LLDEELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAIS-GRYQ 243
            L+E  P     +        K  D     ++SGT G PK     +       I   +Y 
Sbjct: 205 ELEESSPIFERPTGEVS---TKNEDICLVYFSSGTAGFPKMVEHDN-TYPLGHILTAKYW 260

Query: 244 TGLTSDDVVYTTL-P--LYHTAGGLLGIGQCLLGGSTVVI--RSKFSASNFWKDCIKYNC 298
             +  D + YT           G L G     + G  V +    +F A N  +   KY  
Sbjct: 261 QNVEDDGLHYTVADSGWGKCVWGKLYGQ---WIAGCAVFVYDYDRFEAKNMLEKASKYGV 317

Query: 299 TVAQYIGEMC------RYLLAVPEKPEDTQHSVKMMIGNG--LRPQVWEPFQKRFGLDRI 350
           T        C      R+L+       +   ++K  +  G  L P+V+  F +  G+ ++
Sbjct: 318 TT------FCAPPTIYRFLIKEDLSHYNFS-TLKYAVVAGEPLNPEVFNRFLEFTGI-KL 369

Query: 351 CEFYGATEGN---ANLMNADGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDG-LC 406
            E +G TE     A     + K G++G       P Y + L+  D +       ++G + 
Sbjct: 370 MEGFGQTETVVTIATFPWMEPKPGSIGK----PTPGYKIELM--DRDGRLCEVGEEGEIV 423

Query: 407 IPCKAEEPGILIGMIKESRAESHFNGYA-DKKASEKKILRNVYSHGDAAFNTGDILIKDK 465
           I     +P   +G+         F  Y  D + +E+      Y       +TGD+   D+
Sbjct: 424 INTMEGKP---VGL---------FVHYGKDPERTEETWHDGYY-------HTGDMAWMDE 464

Query: 466 FQYFYFKDRTGD 477
             Y +F  R  D
Sbjct: 465 DGYLWFVGRADD 476

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550

 Score =  146 bits (372), Expect = 1e-38
 Identities = 88/424 (20%), Positives = 165/424 (38%), Gaps = 44/424 (10%)

Query: 64  GAYKYTVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAF 122
              +  +T+ +  + S R+A   K  GL     + +  E   ++    LG   IGV  A 
Sbjct: 45  AHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAP 104

Query: 123 INTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPS 182
            N    +  L++S+ +++   +    +  + +  V+  +P I        +         
Sbjct: 105 ANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSM 164

Query: 183 TTLLDEELPEVSAKSPTEDIKKNKPSDKLAYI-YTSGTTGLPKAAVMTH---VRAMFMAI 238
            T +   LP    +        ++    +A I  +SG+TGLPK   + H         A 
Sbjct: 165 YTFVTSHLPPGFNEYDFVPESFDRDKT-IALIMNSSGSTGLPKGVALPHRTACVRFSHAR 223

Query: 239 SGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNC 298
              +   +  D  + + +P +H   G+      L+ G  VV+  +F    F +    Y  
Sbjct: 224 DPIFGNQIIPDTAILSVVPFHH-GFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKI 282

Query: 299 TVAQYIGEMCRYLLAVPEKPEDTQHSVKMMIGNG--LRPQVWEPFQKRFGLDRICEFYGA 356
             A  +  +  +        +    ++  +   G  L  +V E   KRF L  I + YG 
Sbjct: 283 QSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGL 342

Query: 357 TE-GNANLMNADG--KVGAVGYIPYIAIPFYPVGLIKCDPETSEPI-RNKDG-LCIPCKA 411
           TE  +A L+  +G  K GAVG +    +PF+   ++  D +T + +  N+ G LC+    
Sbjct: 343 TETTSAILITPEGDDKPGAVGKV----VPFFEAKVV--DLDTGKTLGVNQRGELCV---- 392

Query: 412 EEPGILIGMIKESRAESHFNGYA-DKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFY 470
                        R     +GY  + +A+   I ++ + H      +GDI   D+ ++F+
Sbjct: 393 -------------RGPMIMSGYVNNPEATNALIDKDGWLH------SGDIAYWDEDEHFF 433

Query: 471 FKDR 474
             DR
Sbjct: 434 IVDR 437

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617

 Score =  137 bits (348), Expect = 3e-35
 Identities = 55/334 (16%), Positives = 105/334 (31%), Gaps = 53/334 (15%)

Query: 69  TVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQ 127
            +++ ++   ++ +A   + +G++ G+   + +    E    +  L K+GV       + 
Sbjct: 50  QLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGVAPVLALFSH 109

Query: 128 RQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLD 187
           ++  L       E   +I                   S          +   +    LL+
Sbjct: 110 QRSELNAYASQIEPALLI-----------ADRQHALFSGDDFLNTFVTEHSSIRVVQLLN 158

Query: 188 EE----LPEVSAKSPTEDIKKNKPSDKLAYI-YTSGTTGLPKAAVMTHVRAMFMAISGRY 242
           +     L +       +      P+D++AY   + GTTG PK    TH    +       
Sbjct: 159 DSGEHNLQDAINHPAEDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVE 218

Query: 243 QTGLTSDDVVYTTLPLYHTAG----GLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNC 298
               T        +P  H       G LG     L G TVV+ +  SA+  +    K+  
Sbjct: 219 ICQFTQQTRYLCAIPAAHNYAMSSPGSLG---VFLAGGTVVLAADPSATLCFPLIEKHQV 275

Query: 299 TVAQYIGEMCRYLLAVP---------EKPEDTQH---SVKMMIGNG--LRPQVWEPFQKR 344
            V             VP             +++    S+K++   G  L   +       
Sbjct: 276 NV----------TALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARLSATLAARIPAE 325

Query: 345 FGLDRICEFYGATEGNANLMNADG----KVGAVG 374
            G  ++ + +G  EG  N    D      +   G
Sbjct: 326 IGC-QLQQVFGMAEGLVNYTRLDDSAEKIIHTQG 358

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544

 Score =  135 bits (343), Expect = 7e-35
 Identities = 75/422 (17%), Positives = 137/422 (32%), Gaps = 58/422 (13%)

Query: 73  QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHIL 132
           +++  S  +A     KGL +GD   + +    E+  ++  L K GVV      + RQ+ L
Sbjct: 60  ELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGVVVLNALYSHRQYEL 119

Query: 133 IHSIKVAECKAIIY-----GAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLD 187
              IK  + K +I          ++ +  + D      +      +     +L       
Sbjct: 120 NAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQATDFGLLDWIETPA 179

Query: 188 EELPEVSAKSPTEDIKKNKPSDKLAYI-YTSGTTGLPKAAVMTHVRAMFMAISGRYQTGL 246
           E   + S+             D++A+   + G+TG PK    TH    +   +     GL
Sbjct: 180 ETFVDFSSTPA----------DEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGL 229

Query: 247 TSDDVVYTTLPLYHTAG----GLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQ 302
            S+  +   LP  H       G LG    L  G  VV+       N +    ++   +A 
Sbjct: 230 NSNTRLLCALPAPHNFMLSSPGALG---VLHAGGCVVMAPNPEPLNCFSIIQRHQVNMAS 286

Query: 303 YIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFYGATEGN 360
            +       L    + +D   S+K++   G      +     +     ++ + +G  EG 
Sbjct: 287 LVPSAVIMWLEKAAQYKDQIQSLKLLQVGGASFPESLARQVPEVLNC-KLQQVFGMAEGL 345

Query: 361 ANLMNADG----KVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGI 416
            N    D          G       P      IK        I ++          E G+
Sbjct: 346 VNYTRLDDSDEQIFTTQGR------PISSDDEIK--------IVDEQYR--EVPEGEIGM 389

Query: 417 LIGMIKESRAESHFNGY-ADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRT 475
           L      +R    F GY    + + +    + Y +      +GD++ +          R 
Sbjct: 390 LA-----TRGPYTFCGYYQSPEHNSQVFDEDNYYY------SGDLVQRTPDGNLRVVGRI 438

Query: 476 GD 477
            D
Sbjct: 439 KD 440

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536

 Score =  133 bits (336), Expect = 7e-34
 Identities = 101/435 (23%), Positives = 166/435 (38%), Gaps = 70/435 (16%)

Query: 64  GAYKYTVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAF 122
           GA     T+  VE  + R+A+     G+Q+GD + LF+   PE+V  +LG S  G +   
Sbjct: 44  GANGDVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITA 103

Query: 123 INTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPS 182
            N       L    K +  K +I  A   E + +       + +    +        L  
Sbjct: 104 ANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARE-SDVKVMCVDS---APDGCLHF 159

Query: 183 TTLLDEELPEVSAKSPTEDIKKNKPSDKLAYI-YTSGTTGLPKAAVMTH----VRAMFMA 237
           + L   +  E     P  DI    P D +  + Y+SGTTGLPK  ++TH           
Sbjct: 160 SELTQADENEA----PQVDI---SPDD-VVALPYSSGTTGLPKGVMLTHKGLITSVAQQV 211

Query: 238 ISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYN 297
                     S+DV+   LP++H       +   L  G+ ++I  KF   +      KY 
Sbjct: 212 DGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYK 271

Query: 298 CTVAQ-----YIGEMCRYLLAVPEKPEDTQHSVKMMIGNG--LRPQVWEPFQKRFGLDRI 350
            ++A       +      +   P+  +    S++M+   G  L  ++ +  + +F   R+
Sbjct: 272 VSIAPVVPPVMMS-----IAKSPDLDKHDLSSLRMIKSGGAPLGKELEDTVRAKFPQARL 326

Query: 351 CEFYGATE----GNANLMNA----DGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPI-RN 401
            + YG TE        L  A    D K GA G +    +    + ++  DPET   + RN
Sbjct: 327 GQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTV----VRNAEMKIV--DPETGASLPRN 380

Query: 402 KDG-LCIPCKAEEPGILIGMIKESRAESHFNGYA-DKKASEKKILRNVYSHGDAAFNTGD 459
           + G +CI                 R +    GY  D +A+ + I +  + H      TGD
Sbjct: 381 QPGEICI-----------------RGDQIMKGYLNDPEATSRTIDKEGWLH------TGD 417

Query: 460 ILIKDKFQYFYFKDR 474
           I   D     +  DR
Sbjct: 418 IGYIDDDDELFIVDR 432

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979

 Score =  132 bits (334), Expect = 4e-33
 Identities = 93/440 (21%), Positives = 162/440 (36%), Gaps = 72/440 (16%)

Query: 64  GAYKYTVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAF 122
           G   +  T+  V   S +IA  F   G+ + D V L +   PE+V  +L  S  G  A  
Sbjct: 83  GPTGHVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATA 142

Query: 123 INTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPS 182
            N       +    K +  K II  A   + +  +++    + +        P  +    
Sbjct: 143 ANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDDGVVIVCIDDNESVPIPEGCLR 202

Query: 183 TTLLDEELPEVSAKSPTEDIKKNKPSDKLAYI-YTSGTTGLPKAAVMTH----VRAMFMA 237
            T L +   E S    + +I    P D +  + Y+SGTTGLPK  ++TH           
Sbjct: 203 FTELTQSTTEASEVIDSVEI---SPDD-VVALPYSSGTTGLPKGVMLTHKGLVTSVAQQV 258

Query: 238 ISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYN 297
                     SDDV+   LP++H       +   L  G+ ++I  KF  +   +   +  
Sbjct: 259 DGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCK 318

Query: 298 CTVAQYIGEMCRYLLAVP-------EKPEDTQH---SVKMMIGNG--LRPQVWEPFQKRF 345
            T              VP       +  E  ++   S++++      L  ++ +    +F
Sbjct: 319 VT----------VAPMVPPIVLAIAKSSETEKYDLSSIRVVKSGAAPLGKELEDAVNAKF 368

Query: 346 GLDRICEFYGATE----GNANLMNA----DGKVGAVGYIPYIAIPFYPVGLIKCDPETSE 397
              ++ + YG TE       +L  A      K GA G +    +    + ++  DP+T +
Sbjct: 369 PNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTV----VRNAEMKIV--DPDTGD 422

Query: 398 PI-RNKDG-LCIPCKAEEPGILIGMIKESRAESHFNGYA-DKKASEKKILRNVYSHGDAA 454
            + RN+ G +CI                 R      GY  +  A+ + I ++ + H    
Sbjct: 423 SLSRNQPGEICI-----------------RGHQIMKGYLNNPAATAETIDKDGWLH---- 461

Query: 455 FNTGDILIKDKFQYFYFKDR 474
             TGDI + D     +  DR
Sbjct: 462 --TGDIGLIDDDDELFIVDR 479

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539

 Score =  130 bits (329), Expect = 6e-33
 Identities = 77/427 (18%), Positives = 143/427 (33%), Gaps = 63/427 (14%)

Query: 69  TVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQ 127
             ++ +++  ++R+A  F+  G+Q+ D V + +    E+  +   L ++G +  F   + 
Sbjct: 50  HWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFALPSH 109

Query: 128 RQHILIHSIKVAECKAIIY-----GAELSEALTEVKDSIPGI-SLYAAGTRRKPQAKVLP 181
           R   + +  + AE  A I      G +      +V+  +P + ++  AG     +   L 
Sbjct: 110 RSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEA--EEFLPLE 167

Query: 182 STTLLDEELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGR 241
                  +LPEV              SD      + G+TGL K    TH   ++      
Sbjct: 168 DLHTEPVKLPEVK------------SSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSV 215

Query: 242 YQTGLTSDDVVYTTLPLYHTAG----GLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYN 297
               L    V    LP+ H       G+LG    L  G  VV+    S  + +    +  
Sbjct: 216 EVCWLDHSTVYLAALPMAHNYPLSSPGVLG---VLYAGGRVVLSPSPSPDDAFPLIEREK 272

Query: 298 CTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMIGNG--LRPQVWEPFQKRFGLDRICEFYG 355
            T+   +  +    +       D   S++++   G     +     +  FG   + + +G
Sbjct: 273 VTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVFGC-TLQQVFG 331

Query: 356 ATEGNANLMNADG----KVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKA 411
             EG  N    D      V   G       P  P    +        + +        K 
Sbjct: 332 MAEGLVNYTRLDDPEEIIVNTQGK------PMSPYDESR--------VWDDHDR--DVKP 375

Query: 412 EEPGILIGMIKESRAESHFNGYADK-KASEKKILRNVYSHGDAAFNTGDILIKDKFQYFY 470
            E G L+     +R      GY    + +      + +        TGDI+   +  Y  
Sbjct: 376 GETGHLL-----TRGPYTIRGYYKAEEHNAASFTEDGFYR------TGDIVRLTRDGYIV 424

Query: 471 FKDRTGD 477
            + R  D
Sbjct: 425 VEGRAKD 431

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590

 Score = 92.8 bits (231), Expect = 3e-20
 Identities = 54/311 (17%), Positives = 113/311 (36%), Gaps = 60/311 (19%)

Query: 69  TVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVA--AFINT 125
           T+T+ Q++ H+  IA   +++G + GD V L        +  +LG    G +A   +   
Sbjct: 40  TMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYAGCIAVPIYPPA 99

Query: 126 NQRQHILIHSI-KVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTT 184
            ++       I   ++   ++  A+  +  T                 +  +   +   +
Sbjct: 100 QEKLLDKAQRIVTNSKPVIVLMIADHIKKFTA---------DELNTNPKFLKIPAIALES 150

Query: 185 LLDEELPEVSAKSPTEDIKKNKPSDKLAYI-YTSGTTGLPKAAVMTH--VRAMFMAISGR 241
           +           S   +         +A++ YTSG+T  PK  +++H  +      I   
Sbjct: 151 IELNRSSSWQPTSIKSN--------DIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTS 202

Query: 242 YQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNF------WKDCI- 294
           +   +  + ++++ LP +H  G +  I   + GG   ++    S  +F      W   I 
Sbjct: 203 F--HMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIM---MSPFSFLQNPLSWLKHIT 257

Query: 295 KYNCTVAQ-----YIGEMC-RYLLAVPEKPEDTQH----SVKMMIGNG---LRPQVWEPF 341
           KY  T++      Y  + C + +     + E  +     S      NG   +R +  E F
Sbjct: 258 KYKATISGSPNFAY--DYCVKRI-----REEKKEGLDLSSWVTAF-NGAEPVREETMEHF 309

Query: 342 QKRF---GLDR 349
            + F   G  +
Sbjct: 310 YQAFKEFGFRK 320

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480

 Score = 87.4 bits (217), Expect = 1e-18
 Identities = 58/326 (17%), Positives = 105/326 (32%), Gaps = 66/326 (20%)

Query: 69  TVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINT-N 126
           T+T+ Q+   +  +A      G   GD V +      EYV  +LG  + G +A  ++   
Sbjct: 58  TLTWSQLYRRTLNVAQELSRCG-STGDRVVISAPQGLEYVVAFLGALQAGRIAVPLSVPQ 116

Query: 127 QRQHI--LIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTT 184
                      +  +   AI+  +   + + +     PG S             ++    
Sbjct: 117 GGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGES----------PPSIIEVDL 166

Query: 185 LLDEELPEVSAKSPTEDIKKNKPSDKLAYI-YTSGTTGLPKAAVMTH------VRAMFMA 237
           L  +     + K               AY+ YTSG+T  P   VM+H         +   
Sbjct: 167 LDLDAPNGYTFKEDE--------YPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSG 218

Query: 238 ISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNF------WK 291
                      +  + + LP YH  G ++GI   +LGG   V+    S  +F      W 
Sbjct: 219 YFADTDGIPPPNSALVSWLPFYHDMGLVIGICAPILGGYPAVL---TSPVSFLQRPARWM 275

Query: 292 DCI-KYNCTVAQ-----YIGEMC-RYLLAVPEKPEDTQH----SVKMMIGNG---LRPQV 337
             +       +      +  E+  R         +D       ++  ++ +G   ++   
Sbjct: 276 HLMASDFHAFSAAPNFAF--ELAARRT-----TDDDMAGRDLGNILTIL-SGSERVQAAT 327

Query: 338 WEPFQKRF---GLDR--ICEFYGATE 358
            + F  RF    L    I   Y   E
Sbjct: 328 IKRFADRFARFNLQERVIRPSYWLAE 353

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541

 Score = 79.1 bits (196), Expect = 6e-16
 Identities = 59/307 (19%), Positives = 112/307 (36%), Gaps = 51/307 (16%)

Query: 73  QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINT----NQR 128
           +V   + R+    ++ G+  GD VA        ++  +  +  +G V    N      + 
Sbjct: 52  EVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEI 111

Query: 129 QHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLD- 187
            +IL H    AE K +++   L   +  ++  +  +  +     + P          L  
Sbjct: 112 AYILNH----AEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAP-------EGYLAY 160

Query: 188 EELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMF---MAISGRYQT 244
           EE   +  ++    + +          YT+GTTGLPK  V +H RA+    +A S    T
Sbjct: 161 EEA--LGEEADPVRVPERAAC---GMAYTTGTTGLPKGVVYSH-RALVLHSLAASLVDGT 214

Query: 245 GLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQYI 304
            L+  DVV   +P++H     L     L+G   V+   +   ++  +       T     
Sbjct: 215 ALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFT--- 271

Query: 305 GEMCRYLLAVP-----------EKPEDTQHSVKMMIGNG--LRPQVWEPFQKRFGLDRIC 351
                    VP                 +   ++++G G      +   F +R G++ + 
Sbjct: 272 -------AGVPTVWLALADYLESTGHRLKTLRRLVVG-GSAAPRSLIARF-ERMGVE-VR 321

Query: 352 EFYGATE 358
           + YG TE
Sbjct: 322 QGYGLTE 328

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* Length = 521

 Score = 72.2 bits (178), Expect = 1e-13
 Identities = 47/301 (15%), Positives = 87/301 (28%), Gaps = 58/301 (19%)

Query: 78  SNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAF--INTN---QR-QHI 131
           S+ IA F  S  L     V +F     + +  ++ L+K G   A+  ++ +   +R   I
Sbjct: 39  SDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVALTKSG--HAYIPVDVHSAPERILAI 96

Query: 132 LIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRK-PQAKVLPSTTLLDEEL 190
           +                         + + P + +             ++     L E  
Sbjct: 97  I-------------------------EIAKPSLIIAIEEFPLTIEGISLV----SLSEIE 127

Query: 191 PEVSAKSPTEDIKKNKPSDKLAY-IYTSGTTGLPKAAVMTHV----RAMFMAISGRYQTG 245
               A+ P E     K  D   Y I+TSGTTG PK   ++H        +M     +   
Sbjct: 128 SAKLAEMPYERTHSVKGDD-NYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAF--D 184

Query: 246 LTSDDVVYTTLPLYHTAG---GLLGIGQCLLGGSTVVIRSK---FSASNFWKDCIKYNCT 299
           +     +               ++     L  G T+    K         +    +    
Sbjct: 185 VPKQPQM----LAQPPYSFDLSVMYWAPTLALGGTLFALPKELVADFKQLFTTIAQLPVG 240

Query: 300 VAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFYGAT 357
           +           +   +  +    ++      G  L         +RF   +I   YG T
Sbjct: 241 IWTSTPSFADMAMLSDDFCQAKMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPT 300

Query: 358 E 358
           E
Sbjct: 301 E 301

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Length = 1304

 Score = 71.1 bits (175), Expect = 4e-13
 Identities = 54/297 (18%), Positives = 97/297 (32%), Gaps = 54/297 (18%)

Query: 78  SNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAF--INTN---QR-QHI 131
           +NRIA   +  G  +G  VAL+ +   E V   LG+ K G  AA+  ++      R  ++
Sbjct: 499 ANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAG--AAYLPVDPKLPEDRISYM 556

Query: 132 LIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELP 191
           L  S        ++   E+ E   E+  +                         L  +  
Sbjct: 557 LADS----AAACLLTHQEMKEQAAELPYTGT----------------------TLFIDDQ 590

Query: 192 EVSAKSPTEDIKKNKPSDKLAY-IYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDD 250
               +  ++      P+D  AY +YTSGTTG PK  + TH   +   +        +  D
Sbjct: 591 TRFEEQASDPATAIDPND-PAYIMYTSGTTGKPKGNITTH-ANIQGLVKHVDYMAFSDQD 648

Query: 251 VVYTTLPLYHTA----GGLLGIGQCLLGGSTVVIRSK---FSASNFWKDCIKYNCTVAQY 303
                  L  +              +L  + ++I  +             ++ N  V   
Sbjct: 649 TF-----LSVSNYAFDAFTFDFYASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFA 703

Query: 304 IGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFYGATE 358
              +   L    +  ED    ++ ++  G            +  G  ++   YG TE
Sbjct: 704 TTALFNLLT---DAGEDWMKGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTE 757

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* Length = 511

 Score = 68.3 bits (168), Expect = 2e-12
 Identities = 33/189 (17%), Positives = 59/189 (31%), Gaps = 20/189 (10%)

Query: 182 STTLLDEELPEVSAKSPTEDIKKNKPSDKLAY-IYTSGTTGLPKAAVMTHVRAM---FMA 237
               +  E    +        +  K  +   Y IYTSG+TG PK   ++    +      
Sbjct: 117 QIQTVSAEELLENEGGSVSQDQWVKEHE-TFYIIYTSGSTGNPKGVQISA-ANLQSFTDW 174

Query: 238 ISGRYQTGLTSDDVVYTTLPLYHTAG---GLLGIGQCLLGGSTVVIRSK---FSASNFWK 291
           I   +   ++   +                ++ +  CL  G T+   +K         ++
Sbjct: 175 ICADF--PVSGGKIF----LNQAPFSFDLSVMDLYPCLQSGGTLHCVTKDAVNKPKVLFE 228

Query: 292 DCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDR 349
           +  K    V        +  L  P   +D        +  G  L   V +   +RF   +
Sbjct: 229 ELKKSGLNVWTSTPSFVQMCLMDPGFSQDLLPHADTFMFCGEVLPVSVAKALLERFPKAK 288

Query: 350 ICEFYGATE 358
           I   YG TE
Sbjct: 289 IFNTYGPTE 297

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* Length = 512

 Score = 67.5 bits (166), Expect = 3e-12
 Identities = 39/215 (18%), Positives = 71/215 (33%), Gaps = 23/215 (10%)

Query: 157 VKDSIPGISL-YAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTEDIKKNKPSDKLAY-I 214
            ++S   + L   A T      +++   +  + +    + K  T + +     D+  Y I
Sbjct: 94  AENSGAKLLLSATAVTVTDLPVRIV---SEDNLKDIFFTHKGNTPNPEHAVKGDENFYII 150

Query: 215 YTSGTTGLPKAAVMTHVRAM---FMAISGRYQTGLTSDDVVYTTLPLYHTAG---GLLGI 268
           YTSG+TG PK   +T+   +          +   L +  V                ++ I
Sbjct: 151 YTSGSTGNPKGVQITY-NCLVSFTKWAVEDF--NLQTGQVF----LNQAPFSFDLSVMDI 203

Query: 269 GQCLLGGSTVVIRSK---FSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSV 325
              L+ G T+    K       + +    + +  V           L      E    ++
Sbjct: 204 YPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNM 263

Query: 326 KMMI--GNGLRPQVWEPFQKRFGLDRICEFYGATE 358
           K  +  G  L  +V     +RF    I   YG TE
Sbjct: 264 KTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTE 298

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* Length = 369

 Score = 59.7 bits (144), Expect = 6e-10
 Identities = 35/222 (15%), Positives = 58/222 (26%), Gaps = 33/222 (14%)

Query: 207 PSDKLAYIY-TSGTTGLPKAAVMTH----VRAMFMAISGRYQTGLTSDDVVYTTLPLYHT 261
           P+D    +Y + GTTG PK  V           +     +++ G  S + +       H 
Sbjct: 89  PADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHI 148

Query: 262 AGGLLGIGQCLLGGSTVVIR-------------SKFSASNFWKDCIKYNCTVAQYIGE-- 306
            G +       LGG    I                 +   +    +              
Sbjct: 149 VGAINKERALRLGGMFFSIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRF 208

Query: 307 ------MCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLD-RICEFYGAT 357
                 + R LL  PE     + S+  +   G  L     +        D      YG+T
Sbjct: 209 LVTTPPVLRELLKRPEVVLQMKQSLAQITLGGTELNLDEIKFIASEILPDCEFSASYGST 268

Query: 358 EGNANLMNADGKVGAVGYIPYIAIPFYPVGLIK-CDPETSEP 398
                  +      +      I   F P       D  T++ 
Sbjct: 269 SALGVSRSLLI--TSESQ-QVIYDSFSPFITYDVVDSITAQT 307

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} Length = 562

 Score = 57.6 bits (140), Expect = 5e-09
 Identities = 33/218 (15%), Positives = 63/218 (28%), Gaps = 25/218 (11%)

Query: 157 VKDSIPGISLYAAGTRRK-PQAKVLPSTTLLDEELPEVSAKSPTEDIKKNKPSDKLAY-I 214
           ++DS   ++                      ++   E  +   T DI  N P +  AY +
Sbjct: 122 LRDSRAAMAFVCDNNFDGVELPPETKVLDTKNQSFIENLSTQDTSDILNNYPENLDAYLL 181

Query: 215 YTSGTTGLPKAAVMTH------VRAM--FMAISGRYQTGLTSDDVVYTTLPLYHTAG--- 263
           YTSG+TG PK   ++         A    +         L              +     
Sbjct: 182 YTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKF----LCLASRAFDV 237

Query: 264 GLLGIGQCLLGGSTVVIRSK-FSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQ 322
            +  +      G   V   +     +  +   +   T A  +  +      VPE      
Sbjct: 238 HIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLVPE----DA 293

Query: 323 HSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFYGATE 358
             +  +   G  + P+  + +     +  +   YG TE
Sbjct: 294 PHLVYLGVGGEKMTPRTQQIWSSSDRV-ALVNVYGPTE 330

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 Length = 563

 Score = 57.1 bits (139), Expect = 6e-09
 Identities = 40/208 (19%), Positives = 74/208 (35%), Gaps = 41/208 (19%)

Query: 176 QAKVLPSTTLLDEELPEVSAKSPTEDI--------------KKNKPSDKLAY-IYTSGTT 220
           QA++L +   L   +  +      E                  +K +D LAY IYTSGTT
Sbjct: 136 QARMLLTQKHLVHLIHNIQFNGQVEIFEEDTIKIREGTNLHVPSKSTD-LAYVIYTSGTT 194

Query: 221 GLPKAAVMTH--VRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAG---GLLGIGQCLLGG 275
           G PK  ++ H  +  + +         +T  D +      + +      +  +   LL G
Sbjct: 195 GNPKGTMLEHKGISNLKVFFENSL--NVTEKDRI----GQFASISFDASVWEMFMALLTG 248

Query: 276 STVVIRSK---FSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--G 330
           +++ I  K        F +   +   TV         +L        +   S++ +I  G
Sbjct: 249 ASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLD------PERILSIQTLITAG 302

Query: 331 NGLRPQVWEPFQKRFGLDRICEFYGATE 358
           +   P +   ++++         YG TE
Sbjct: 303 SATSPSLVNKWKEKV---TYINAYGPTE 327

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.6 bits (138), Expect = 7e-09
 Identities = 70/538 (13%), Positives = 155/538 (28%), Gaps = 161/538 (29%)

Query: 26  VDTE-NSLDLKQLISGMQKTLPTYARPLFVR---------TIREVPMTGAYKYTVTFQVE 75
           +D E      +      +  L  +    FV            + +       + +    +
Sbjct: 7   MDFETGEHQYQY-----KDILSVF-EDAFVDNFDCKDVQDMPKSILSKEEIDHII--MSK 58

Query: 76  DHSNRIANFFKSKGLQRGDAVALFMEG--QPEYVCMWLGLSKI--------GVVAAFINT 125
           D  +     F +   ++ + V  F+E   +  Y   +L +S I         +   +I  
Sbjct: 59  DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINY--KFL-MSPIKTEQRQPSMMTRMYIEQ 115

Query: 126 NQRQHILIHSIK---VAECKAIIYGAELSEALTEVKDSIPGISLYA-AGTRRKPQAK-VL 180
             R +          V+  +  +   +L +AL E++ +   + +    G+      K  +
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYL---KLRQALLELRPA-KNVLIDGVLGS-----GKTWV 166

Query: 181 PSTTLLDEELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISG 240
                L  ++             + K   K+ ++        P+  V+  ++ +   I  
Sbjct: 167 ALDVCLSYKV-------------QCKMDFKIFWL-NLKNCNSPET-VLEMLQKLLYQIDP 211

Query: 241 RYQTGLTSDDVVYTTLPLYHTAGGLLGI------GQCLLGGSTVVIRSKFSASNFW-KDC 293
            + +   SD      L ++     L  +        CLL     V+       N      
Sbjct: 212 NWTSR--SDHSSNIKLRIHSIQAELRRLLKSKPYENCLL-----VLL------NVQNAKA 258

Query: 294 IKY---NC---------TVAQYIGEMCRY------------------LLA--VPEKPEDT 321
                 +C          V  ++                        LL   +  +P+D 
Sbjct: 259 WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL 318

Query: 322 QHSVKM-------MIGNGLR--PQVWEPFQKRFGLDRICEFYGATEGNANLMNADGKVGA 372
              V         +I   +R     W+ + K    D++     ++     L  A+ +   
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWDNW-KHVNCDKLTTIIESSL--NVLEPAEYR--- 372

Query: 373 VGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCI----PCKAEEPGILIGMIKESRAES 428
                 +++ F         P  S  I     L +      K++   ++  + K S  E 
Sbjct: 373 -KMFDRLSV-F---------PP-SAHIPTIL-LSLIWFDVIKSDVMVVVNKLHKYSLVEK 419

Query: 429 HFNGY---------------ADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYF 471
                                ++ A  + I+ + Y+     F++ D++     QYFY 
Sbjct: 420 QPKESTISIPSIYLELKVKLENEYALHRSIV-DHYNIPKT-FDSDDLIPPYLDQYFYS 475

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Length = 620

 Score = 51.0 bits (123), Expect = 6e-07
 Identities = 26/185 (14%), Positives = 49/185 (26%), Gaps = 49/185 (26%)

Query: 78  SNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAF--INTN---QR-QHI 131
           + +++++      Q G  + ++ E   E +   L +   G    +  I+          +
Sbjct: 62  AEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLLAILLSG--HHYLYIDLKQPAAWNAEL 119

Query: 132 LIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELP 191
                                     +     + L  + T             +    LP
Sbjct: 120 C-------------------------RQVDCRLILDCSTTPTPANGLPC----VPVRHLP 150

Query: 192 EVSAKSPTEDIKKNKPSDKLAY-IYTSGTTGLPKAAVMTH---VRAMFMAISGRYQTGLT 247
              A            +D++AY  ++SGTTG PKA   TH    R               
Sbjct: 151 AAPASVARPCF----AADQIAYINFSSGTTGRPKAIACTHAGITRLCLG--QSFL--AFA 202

Query: 248 SDDVV 252
                
Sbjct: 203 PQMRF 207

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	479
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	100.0
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	100.0
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	100.0
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	100.0
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	100.0
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	100.0
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	100.0
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	100.0
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	100.0
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	100.0
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	100.0
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	100.0
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	100.0
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	100.0
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	100.0
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	100.0
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	100.0
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	100.0
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	100.0
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
4gr5_A	570	Non-ribosomal peptide synthetase; MBTH-like domain	100.0
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	100.0
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	100.0
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	100.0
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	100.0
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	100.0
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	100.0
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	100.0
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	100.0
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	100.0
4gs5_A	358	Acyl-COA synthetase (AMP-forming)/AMP-acid ligase	100.0
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	100.0
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	100.0
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	99.97
4eql_A	581	4-substituted benzoates-glutamate ligase GH3.12; f	98.0
4b2g_A	609	GH3-1 auxin conjugating enzyme; signaling protein,	97.76
4epl_A	581	Jasmonic acid-amido synthetase JAR1; ANL adenylati	97.66
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	93.43
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	93.06
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	92.78
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	86.73
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	85.44
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	84.63
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	83.97
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	81.65
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	80.7
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	80.67

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*

Probab=100.00  E-value=3e-64  Score=511.96  Aligned_cols=396  Identities=22%  Similarity=0.300  Sum_probs=336.0

Q ss_pred             chhHHHHHHHhhcCCCccccEEE-----Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCcee
Q psy8225          47 TYARPLFVRTIREVPMTGAYKYT-----VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVA  120 (479)
Q Consensus        47 ~~l~~~l~~~~~~~p~~~a~~~~-----~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~  120 (479)
                      .++.++|.++++++|+++|+++.     +|| ||.++++++|+.|+++|+++||+|+++++|++++++++|||+++|+++
T Consensus        22 ~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~la~~~~Gav~  101 (536)
T 3ni2_A           22 LPLHSYVLENLSNHSSKPCLINGANGDVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAII  101 (536)
T ss_dssp             CCHHHHHTTTGGGSTTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEE
T ss_pred             CcHHHHHHHHhhcCCCceEEEECCCCCEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHhCCEE
Confidence            57999999999999999999984     999 999999999999999999999999999999999999999999999999


Q ss_pred             eeecCCcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCCcceEEecCCCCCCCccCCCccccccccCCcCCCCCCcc
Q psy8225         121 AFINTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTE  200 (479)
Q Consensus       121 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (479)
                      +|++|.++.+++.+++++++++++|++......+....... ..+++.++...       .....++++........+  
T Consensus       102 vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~--  171 (536)
T 3ni2_A          102 TAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARES-DVKVMCVDSAP-------DGCLHFSELTQADENEAP--  171 (536)
T ss_dssp             EECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHH-TCEEEESSCCC-------TTCEETHHHHTSCGGGCC--
T ss_pred             eccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhc-CceEEEecCCC-------CCccCHHHHhhccccccc--
Confidence            99999999999999999999999999988776665554332 34455444321       122333333332211111  


Q ss_pred             cccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhh----hcCCCCCCeEEEeccchhhhhhHHHHHHHHhcCc
Q psy8225         201 DIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRY----QTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGS  276 (479)
Q Consensus       201 ~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~----~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G~  276 (479)
                       .....++++++|+|||||||.||||+++|+++...+.....    .+++..+|++++.+|++|.+|+...++.++..|+
T Consensus       172 -~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~  250 (536)
T 3ni2_A          172 -QVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGA  250 (536)
T ss_dssp             -CCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSHHHHHHTHHHHHHHTC
T ss_pred             -cCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHHHHHHHHHHHHHhcCC
Confidence             13456789999999999999999999999999887665433    3467889999999999999998777888999999


Q ss_pred             eEEecCCCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEE--ecCCChhhHHHHHHHhCcceeeeec
Q psy8225         277 TVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFY  354 (479)
Q Consensus       277 ~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~--G~~l~~~~~~~~~~~~~~~~v~~~Y  354 (479)
                      ++++.+.+++..+++.++++++|++.++|+++..|.+........+++||.++  |+++++++.+++++.++..++++.|
T Consensus       251 ~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~~~Y  330 (536)
T 3ni2_A          251 PILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKHDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGY  330 (536)
T ss_dssp             CEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSCGGGSCCTTCCEEEEESSCCCHHHHHHHHHHCTTSEEEEEE
T ss_pred             EEEEcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCcccccCCCccceEEEECCCCCCHHHHHHHHHHCCCCCccccc
Confidence            99999999999999999999999999999999999998776666789999877  8999999999999999434999999


Q ss_pred             cccccCccccc--------CCCCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCc
Q psy8225         355 GATEGNANLMN--------ADGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRA  426 (479)
Q Consensus       355 G~tE~~~~~~~--------~~~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~  426 (479)
                      |+||++.+++.        ...+++++|+|++      +++++++|+++++          +++.|+.|||+++    |+
T Consensus       331 G~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~------~~~~~i~d~~~~~----------~~~~g~~GEl~v~----g~  390 (536)
T 3ni2_A          331 GMTEAGPVLAMCLAFAKEPFDIKPGACGTVVR------NAEMKIVDPETGA----------SLPRNQPGEICIR----GD  390 (536)
T ss_dssp             ECGGGSSEEEECGGGSSSCCCCCTTCCCEECS------SCEEEEECTTTCC----------BCCTTCCEEEEEE----ST
T ss_pred             cccccchhhhcccccCCccccCCCCCeeEeCC------CcEEEEEeCCCCc----------CCCCCCccEEEEe----Cc
Confidence            99999865432        1235677777665      8999999988777          6799999999998    88


Q ss_pred             ccccccccCcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         427 ESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       427 ~~~~~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                       +++.|||++++.+.+.|+     .+|||+|||+|++|+||+|+|+||+||++
T Consensus       391 -~v~~GY~~~p~~t~~~~~-----~~g~~~TGDl~~~~~dG~l~~~GR~dd~i  437 (536)
T 3ni2_A          391 -QIMKGYLNDPEATSRTID-----KEGWLHTGDIGYIDDDDELFIVDRLKELI  437 (536)
T ss_dssp             -TSCSEETTCHHHHHHHBC-----TTSCEEEEEEEEECTTSCEEEEEECSCCE
T ss_pred             -ccchhhcCChhHHHhhcc-----CCCceEcccEEEEcCCceEEEEecccceE
Confidence             999999999988887764     38999999999999999999999999985

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A

Probab=100.00  E-value=3.2e-63  Score=506.01  Aligned_cols=403  Identities=19%  Similarity=0.238  Sum_probs=324.5

Q ss_pred             ccchhHHHHHHHhhcCCCccccE---EE-----Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhh
Q psy8225          45 LPTYARPLFVRTIREVPMTGAYK---YT-----VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSK  115 (479)
Q Consensus        45 ~~~~l~~~l~~~~~~~p~~~a~~---~~-----~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~  115 (479)
                      .+.++.++|.++++++|+++|++   +.     +|| ||.++++++|++|+++|+++||+|+++++|++++++++|||++
T Consensus        18 ~~~tl~~~l~~~a~~~p~~~a~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~   97 (550)
T 3rix_A           18 EDGTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALF   97 (550)
T ss_dssp             CCSCHHHHHHHHHHHHHTSTTCEEEEETTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHHhCCCCceEEEeeecCCCcEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccHHHHHHHHHH
Confidence            34679999999999999999987   21     999 9999999999999999999999999999999999999999999


Q ss_pred             cCceeeeecCCcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCCcce-EEecCCCCCCCccCCCccccccccCCcCC
Q psy8225         116 IGVVAAFINTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGIS-LYAAGTRRKPQAKVLPSTTLLDEELPEVS  194 (479)
Q Consensus       116 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (479)
                      +|++++|+++.++.+++.++++.++++++|++.+....+.......+.+. +++.+.....     .....+.+++....
T Consensus        98 ~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~  172 (550)
T 3rix_A           98 IGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDY-----QGFQSMYTFVTSHL  172 (550)
T ss_dssp             HTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTTCCEEEETTCSSCB-----TTBCBHHHHHHHHC
T ss_pred             cCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHHhhCCCcceEEEEcCCccc-----cCcccHHHHhhccc
Confidence            99999999999999999999999999999999988877777766666444 3333322110     11222333322111


Q ss_pred             CC----CCcccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhh---cCCCCCCeEEEeccchhhhhhHHH
Q psy8225         195 AK----SPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQ---TGLTSDDVVYTTLPLYHTAGGLLG  267 (479)
Q Consensus       195 ~~----~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~---~~~~~~d~~~~~~pl~h~~g~~~~  267 (479)
                      ..    ..........++++++|+|||||||.||||+++|+++...+......   .++.+++++++.+|++|.+|+ ..
T Consensus       173 ~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~-~~  251 (550)
T 3rix_A          173 PPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGM-FT  251 (550)
T ss_dssp             CTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHH-HH
T ss_pred             cccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcEEEEechHHHHHHH-HH
Confidence            10    00000022245789999999999999999999999998877665544   467889999999999999997 45


Q ss_pred             HHHHHhcCceEEecCCCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEE--ecCCChhhHHHHHHHh
Q psy8225         268 IGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRF  345 (479)
Q Consensus       268 ~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~--G~~l~~~~~~~~~~~~  345 (479)
                      ++.++..|+++++.+.+++..+++.++++++|++.++|+++..|.+........+++||.++  |+++++++.+++.+.+
T Consensus       252 ~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~  331 (550)
T 3rix_A          252 TLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRF  331 (550)
T ss_dssp             HHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCGGGGSCCTTCCEEEECSSCCCHHHHHHHHHHT
T ss_pred             HHHHHHcCCEEEEeCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCccccccCcccccEEEEecCCCCHHHHHHHHHHc
Confidence            67789999999999999999999999999999999999999999988766666789999877  8999999999999999


Q ss_pred             CcceeeeeccccccCcccccC---CCCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEee
Q psy8225         346 GLDRICEFYGATEGNANLMNA---DGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIK  422 (479)
Q Consensus       346 ~~~~v~~~YG~tE~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~  422 (479)
                      +...+++.||+||+++.++..   ..+++++|+|+|      +++++++|+++++          ++++|+.|||+++  
T Consensus       332 ~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~~~~------~~~~~i~d~~~~~----------~~~~g~~GEl~v~--  393 (550)
T 3rix_A          332 HLPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVP------FFEAKVVDLDTGK----------TLGVNQRGELCVR--  393 (550)
T ss_dssp             TCSCCEEEEECGGGSSEEEECCTTCCCTTEEEEECT------TCEEEEECTTTCC----------BCCTTCCEEEEEE--
T ss_pred             CCCccccccCcCccccceecCCCCCCCCCCcccccC------CcEEEEEeCCCCc----------CCCCCCCeEEEEe--
Confidence            985699999999998765532   345677787666      7999999988776          6789999999998  


Q ss_pred             cCCcccccccccCcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         423 ESRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       423 ~~~~~~~~~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                        |+ +++.|||++++.+.+.|+     .+|||+|||+|++|+||+|+|+||+||++
T Consensus       394 --g~-~v~~GY~~~~~~t~~~~~-----~~g~~~TGDl~~~~~dG~l~~~GR~dd~i  442 (550)
T 3rix_A          394 --GP-MIMSGYVNNPEATNALID-----KDGWLHSGDIAYWDEDEHFFIVDRLKSLI  442 (550)
T ss_dssp             --ST-TSCSEETTCHHHHHHHBC-----TTSCEEEEEEEEECTTCCEEEC-------
T ss_pred             --CC-CcchhhcCChhhhhhhcC-----CCCCeecCcEEEEeCCceEEEEecchhee
Confidence              88 999999999998887763     38999999999999999999999999985

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}

Probab=100.00  E-value=7.3e-63  Score=504.95  Aligned_cols=419  Identities=21%  Similarity=0.288  Sum_probs=340.6

Q ss_pred             CCcccHHHHHHhhhhccc---chhHHHHHHHhhcCCCccccEEE--------Eeh-hhHHHHHHHHHHHHHcCCCCCCEE
Q psy8225          29 ENSLDLKQLISGMQKTLP---TYARPLFVRTIREVPMTGAYKYT--------VTF-QVEDHSNRIANFFKSKGLQRGDAV   96 (479)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~---~~l~~~l~~~~~~~p~~~a~~~~--------~Ty-~l~~~~~~la~~L~~~gi~~gd~V   96 (479)
                      ....+..++...+....|   +++.++|+++++.+|+++|+++.        +|| ||.++++++|+.|+++|+++||+|
T Consensus        35 ~~~~~~~~~~~~~~~~~~~~~n~~~~~l~~~a~~~pd~~Al~~~~~~g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V  114 (580)
T 3etc_A           35 TDFESYEDFQENFKILVPENFNFAYDVVDVYARDSPEKLAMIWCDDYGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYV  114 (580)
T ss_dssp             SCCSSHHHHHHHCCBCCCSSCCHHHHTHHHHHHHCTTCEEEEEEESSSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEE
T ss_pred             ccccCHHHHHhcCCCCCcccchHHHHHHHHHHhhCCCCEEEEEEcCCCCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEE
Confidence            344566667666655544   56779999999999999999972        999 999999999999999999999999


Q ss_pred             EEEcCCchHHHHHHHHhhhcCceeeeecCCcchHHHHHHHHhccceEEEeChhhH--HHHHHhhccCCc--ceEEecCCC
Q psy8225          97 ALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVAECKAIIYGAELS--EALTEVKDSIPG--ISLYAAGTR  172 (479)
Q Consensus        97 ~i~~~n~~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~--~~~~~~~~~~~~--~~~~~~~~~  172 (479)
                      +++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|++.+..  ..+.++...++.  ..++.++..
T Consensus       115 ~l~~~~~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (580)
T 3etc_A          115 MLTLKSRYDFWYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGGD  194 (580)
T ss_dssp             EEECTTCTHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHHHHCSCCCEEEEESSS
T ss_pred             EEEcCCCHHHHHHHHHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhhhCCCcceEEEEeCCc
Confidence            9999999999999999999999999999999999999999999999999976643  555555444443  233333322


Q ss_pred             CCCCccCCCccccccccCCcCCCCCC-cccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcCCCCCCe
Q psy8225         173 RKPQAKVLPSTTLLDEELPEVSAKSP-TEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDV  251 (479)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~  251 (479)
                      ..      .....+.+.+........ ........++++++|+|||||||.||+|+++|.+++..+.......++..+++
T Consensus       195 ~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~  268 (580)
T 3etc_A          195 VL------EGWIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNVEDDGL  268 (580)
T ss_dssp             CC------TTCEEHHHHHHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTSCCCTTCE
T ss_pred             cc------cccccHHHHHhhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhhCCCCCce
Confidence            11      223344444333222111 11112457789999999999999999999999998887776666678899999


Q ss_pred             EEEeccchhhhhhHHHHHHHHhcCceEEec--CCCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEE
Q psy8225         252 VYTTLPLYHTAGGLLGIGQCLLGGSTVVIR--SKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI  329 (479)
Q Consensus       252 ~~~~~pl~h~~g~~~~~~~~l~~G~~~v~~--~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~  329 (479)
                      +++..|++|..+.+..++.++..|+++++.  ..+++..+++.|+++++|++.++|++++.|.+.. ....++++||.++
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~-~~~~~l~~lr~i~  347 (580)
T 3etc_A          269 HYTVADSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKED-LSHYNFSTLKYAV  347 (580)
T ss_dssp             EEECCCTTSTHHHHHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSC-C---CCTTCCEEE
T ss_pred             EEEeCChHHHHHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhcc-cccCCCccceEEE
Confidence            999999999988766778899999999887  5789999999999999999999999999998863 3445678999877


Q ss_pred             --ecCCChhhHHHHHHHhCcceeeeeccccccCcccccC---CCCCCcccccCccccCCCceeeEEeCCCCCCccccCCC
Q psy8225         330 --GNGLRPQVWEPFQKRFGLDRICEFYGATEGNANLMNA---DGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDG  404 (479)
Q Consensus       330 --G~~l~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g  404 (479)
                        |+++++++.++|.+.+|. ++++.||+||++..+...   ..+++++|+|+|      +++++++|++ |+       
T Consensus       348 ~gGe~l~~~~~~~~~~~~g~-~i~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~------~~~v~ivd~~-g~-------  412 (580)
T 3etc_A          348 VAGEPLNPEVFNRFLEFTGI-KLMEGFGQTETVVTIATFPWMEPKPGSIGKPTP------GYKIELMDRD-GR-------  412 (580)
T ss_dssp             ECSSCCCHHHHHHHHHHHSC-CCEEEECCTTSSCCEECCTTSCCCTTCCBEECT------TCEEEEECTT-SC-------
T ss_pred             EccCCCCHHHHHHHHHHhCC-eEecccccccccceeecCCCCCCCCCccccCCC------CCEEEEECCC-CC-------
Confidence              899999999999999998 999999999998766543   346678888766      8999999965 54       


Q ss_pred             ccccccCCCCceEEEEeec-CCcccccccccCcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         405 LCIPCKAEEPGILIGMIKE-SRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       405 ~~~~~~~~~~Gel~v~~~~-~~~~~~~~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                         +|++|+.|||++++.. ..+ +++.||+++++.+.+.|.      +|||+|||+|++|+||+|+|+||+||++
T Consensus       413 ---~~~~g~~GEl~v~~~~g~~~-~~~~gY~~~p~~t~~~f~------~gwy~TGDlg~~d~dG~l~~~GR~dd~I  478 (580)
T 3etc_A          413 ---LCEVGEEGEIVINTMEGKPV-GLFVHYGKDPERTEETWH------DGYYHTGDMAWMDEDGYLWFVGRADDII  478 (580)
T ss_dssp             ---BCCTTCCEEEEEECTTCCCT-TCCCEETTCHHHHHHHEE------TTEEEEEEEEEECTTSCEEEEEESSSCE
T ss_pred             ---CCCCCCceEEEEecCCCCCC-eeeccccCCHhHHHhhcC------CCEEecCcEEEECCCCcEEEEecCCCEE
Confidence               6799999999998321 114 899999999999888775      8999999999999999999999999985

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*

Probab=100.00  E-value=8.8e-63  Score=501.81  Aligned_cols=400  Identities=17%  Similarity=0.184  Sum_probs=325.3

Q ss_pred             hcccchhHHHHHHHhhcCCCccccEEE---Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCc
Q psy8225          43 KTLPTYARPLFVRTIREVPMTGAYKYT---VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGV  118 (479)
Q Consensus        43 ~~~~~~l~~~l~~~~~~~p~~~a~~~~---~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~  118 (479)
                      .+.+.++.++|.++++++|+++|+++.   +|| ||.++++++|+.|+++|+++||+|+++++|++++++++|||+++|+
T Consensus        26 ~~~~~tl~~~l~~~a~~~p~~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~Ga  105 (544)
T 3o83_A           26 YWIDQPLTRILTVGVQSHPHSLAIICGERQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGV  105 (544)
T ss_dssp             SCCCCCTTHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHHTC
T ss_pred             CCCCCCHHHHHHHHHHhCCCceEEEcCCCceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHhCc
Confidence            345578999999999999999999987   999 9999999999999999999999999999999999999999999999


Q ss_pred             eeeeecCCcchHHHHHHHHhccceEEEeChhhH-----HHHHHhhccCCcce-EEecCCCCCCCccCCCccccccccCCc
Q psy8225         119 VAAFINTNQRQHILIHSIKVAECKAIIYGAELS-----EALTEVKDSIPGIS-LYAAGTRRKPQAKVLPSTTLLDEELPE  192 (479)
Q Consensus       119 ~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (479)
                      +++|+++.++.+++.+++++++++++|++....     .....+........ ++.......        ...+.++...
T Consensus       106 v~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~  177 (544)
T 3o83_A          106 VVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQAT--------DFGLLDWIET  177 (544)
T ss_dssp             EEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEETCCTT--------SEEHHHHHHS
T ss_pred             EEecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEecCCcc--------ccchhhhhhc
Confidence            999999999999999999999999999987543     23333333333222 222222110        0111111111


Q ss_pred             CCCCCCcccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcCCCCCCeEEEeccchhhhhhHH-HHHHH
Q psy8225         193 VSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLL-GIGQC  271 (479)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~-~~~~~  271 (479)
                      .......  .....++++++|+|||||||.||||+++|+++...+......+++..+|++++.+|++|.+++.. .++.+
T Consensus       178 ~~~~~~~--~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~  255 (544)
T 3o83_A          178 PAETFVD--FSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNFMLSSPGALGV  255 (544)
T ss_dssp             CCSSCCC--CCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHSSHHHHH
T ss_pred             ccccccc--cccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHhCCCCCCeEEEecCcceEeecchHHHHHH
Confidence            1111111  13446789999999999999999999999999999988888889999999999999999998754 57889


Q ss_pred             HhcCceEEecCCCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEE--ecCCChhhHHHHHHHhCcce
Q psy8225         272 LLGGSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDR  349 (479)
Q Consensus       272 l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~--G~~l~~~~~~~~~~~~~~~~  349 (479)
                      +..|+++++.+.+++..+++.++++++|++.++|+++..|++........+++||.++  |+++++++.+++.+.++. +
T Consensus       256 l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~-~  334 (544)
T 3o83_A          256 LHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQIQSLKLLQVGGASFPESLARQVPEVLNC-K  334 (544)
T ss_dssp             HHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTHHHHTTCCEEEEESSCCCHHHHTHHHHHHCS-E
T ss_pred             HHcCCEEEECCCCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhccccCCcceEEEEcCCCCCHHHHHHHHHHhCC-c
Confidence            9999999999999999999999999999999999999999887665555688999876  899999999999999998 9


Q ss_pred             eeeeccccccCcccccCCC----CCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCC
Q psy8225         350 ICEFYGATEGNANLMNADG----KVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESR  425 (479)
Q Consensus       350 v~~~YG~tE~~~~~~~~~~----~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~  425 (479)
                      +++.||+||++..+.....    ..+++|+|++     ++++++++|+ +++          +|++|+.|||+++    |
T Consensus       335 ~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~-----~~~~~~i~d~-~~~----------~~~~g~~GEl~v~----g  394 (544)
T 3o83_A          335 LQQVFGMAEGLVNYTRLDDSDEQIFTTQGRPIS-----SDDEIKIVDE-QYR----------EVPEGEIGMLATR----G  394 (544)
T ss_dssp             EEEEEECTTSCEEECCTTSCHHHHHHCCCEESC-----TTCEEEEECT-TSC----------BCCTTCCEEEEEE----C
T ss_pred             EEeeeccccccceeecCCCchhhccCCCceecC-----CCcEEEEECC-CCC----------CCCCCCeeEEEEe----c
Confidence            9999999998865543322    2355677542     2688998984 454          6799999999998    8


Q ss_pred             cccccccccCcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         426 AESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       426 ~~~~~~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                      | +++.||+++++.+.+.|.     .+|||+|||+|++|+||+|+|+||+||++
T Consensus       395 ~-~v~~GY~~~~~~t~~~f~-----~~g~~~TGDlg~~~~dG~l~~~GR~dd~i  442 (544)
T 3o83_A          395 P-YTFCGYYQSPEHNSQVFD-----EDNYYYSGDLVQRTPDGNLRVVGRIKDQI  442 (544)
T ss_dssp             T-TSCSCCTTCHHHHHHHBC-----TTCCEEEEEEEEECTTSCEEEEEEEC---
T ss_pred             C-CcchhhcCChhhhhhhCC-----CCCCeEcCCEEEEcCCCCEEEEeecCCEE
Confidence            8 999999999998887764     38999999999999999999999999985

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*

Probab=100.00  E-value=2.8e-62  Score=493.33  Aligned_cols=388  Identities=25%  Similarity=0.311  Sum_probs=324.5

Q ss_pred             HHHHHHHhhcCCCccccEEE------Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCceeee
Q psy8225          50 RPLFVRTIREVPMTGAYKYT------VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAF  122 (479)
Q Consensus        50 ~~~l~~~~~~~p~~~a~~~~------~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~  122 (479)
                      .++|.+.++++|+++|+...      +|| ||.++++++|+.|+++|+++||+|+++++|++++++++|||+++|++++|
T Consensus         3 ~~l~~~~a~~~p~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vp   82 (503)
T 4fuq_A            3 ANLFARLFDKLDDPHKLAIETAAGDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLP   82 (503)
T ss_dssp             CCHHHHHHSCCSCTTSEEEEETTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCEEEE
T ss_pred             hhHHHHHHHhCCCCceEEEecCCCcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEEe
Confidence            36889999999999999863      999 99999999999999999999999999999999999999999999999999


Q ss_pred             ecCCcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCCcceEEecCCCCCCCccCCCccccccccCCcCCCCCCcccc
Q psy8225         123 INTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTEDI  202 (479)
Q Consensus       123 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (479)
                      +++.++.+++.+++++++++++|++.+....+........ ..+........         ..+.+..........   .
T Consensus        83 l~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---------~~~~~~~~~~~~~~~---~  149 (503)
T 4fuq_A           83 LNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVG-ATVETLGPDGR---------GSLTDAAAGASEAFA---T  149 (503)
T ss_dssp             CCTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHHT-CEEEECCTTSC---------SHHHHHHHTSCSCCC---C
T ss_pred             cCCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhcC-ceEEEecCCcc---------cccchhhhcCCCCcC---c
Confidence            9999999999999999999999999876544433332222 12322221110         011111111111111   1


Q ss_pred             cCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcCCCCCCeEEEeccchhhhhhHHHHHHHHhcCceEEecC
Q psy8225         203 KKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRS  282 (479)
Q Consensus       203 ~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G~~~v~~~  282 (479)
                      ....++++++|+|||||||.||||+++|+++...+......+++.++|++++.+|++|.+|+...++.++..|+++++.+
T Consensus       150 ~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~  229 (503)
T 4fuq_A          150 IDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLP  229 (503)
T ss_dssp             CCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCSSSHCCCCCCHHHHHHTTCEEEECS
T ss_pred             CCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCEEEEcC
Confidence            34567899999999999999999999999999998888888899999999999999999998777778899999999999


Q ss_pred             CCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEE--ecCCChhhHHHHHHHhCcceeeeeccccccC
Q psy8225         283 KFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFYGATEGN  360 (479)
Q Consensus       283 ~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~--G~~l~~~~~~~~~~~~~~~~v~~~YG~tE~~  360 (479)
                      .+++..+++.++  ++|++.++|+++..|++........++++|.++  |+++++++.++|.+.+|. ++++.||+||++
T Consensus       230 ~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~-~~~~~YG~TE~~  306 (503)
T 4fuq_A          230 KFDPDKILDLMA--RATVLMGVPTFYTRLLQSPRLTKETTGHMRLFISGSAPLLADTHREWSAKTGH-AVLERYGMTETN  306 (503)
T ss_dssp             SCCHHHHHHHHT--TCCEEEECHHHHHHHHTCTTCSTTTTTTCCEEEECSSCCCHHHHHHHHHHHSC-CEEECCEETTTE
T ss_pred             CCCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCCccccchhhcEEEEECCCCCCHHHHHHHHHHhCC-CccceEcccccC
Confidence            999999999997  899999999999999998877666788999877  788999999999999998 999999999998


Q ss_pred             cccccC---CCCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCcccccccccCcc
Q psy8225         361 ANLMNA---DGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNGYADKK  437 (479)
Q Consensus       361 ~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~gY~~~~  437 (479)
                      ..+...   ...++++|+|++      +++++++|+++++          ++++|+.|||+++    || +++.|||+++
T Consensus       307 ~~~~~~~~~~~~~~~~G~p~~------~~~~~i~d~~~g~----------~~~~g~~GEl~v~----g~-~v~~GY~~~~  365 (503)
T 4fuq_A          307 MNTSNPYDGDRVPGAVGPALP------GVSARVTDPETGK----------ELPRGDIGMIEVK----GP-NVFKGYWRMP  365 (503)
T ss_dssp             ECBCCCSSSCCCTTEEEEBCT------TCEEEEECTTTCC----------BCCTTCCEEEEEE----ST-TSCCCBTTCH
T ss_pred             cccccCCCCCCcCCccccCCC------CeEEEEEECCCCC----------CCcCCCceEEEEE----CC-chhhhhcCCh
Confidence            665432   344567777665      8999999988777          6799999999998    88 9999999999


Q ss_pred             hhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         438 ASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       438 ~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                      +.+.+.|.     .+|||+|||+|++|+||+|+|+||+||++
T Consensus       366 ~~t~~~f~-----~~g~~~TGDl~~~~~dG~l~~~GR~dd~i  402 (503)
T 4fuq_A          366 EKTKSEFR-----DDGFFITGDLGKIDERGYVHILGRGKDLV  402 (503)
T ss_dssp             HHHHHTBC-----TTSCEEEEEEEEECTTCEEEECCSSTTCE
T ss_pred             hhhHhhhC-----CCCCeEcceeEEEcCCCcEEEEecCCCEE
Confidence            88887664     37999999999999999999999999985

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}

Probab=100.00  E-value=1e-62  Score=502.09  Aligned_cols=398  Identities=20%  Similarity=0.251  Sum_probs=327.4

Q ss_pred             cchhHHHHHHHhhcCCCccccEEE-----------Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHh
Q psy8225          46 PTYARPLFVRTIREVPMTGAYKYT-----------VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGL  113 (479)
Q Consensus        46 ~~~l~~~l~~~~~~~p~~~a~~~~-----------~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~  113 (479)
                      ..++.++|.++++++|+++|+++.           +|| ||.++++++|+.|+++|+++||+|+++++|++++++++|||
T Consensus        18 ~~~l~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~   97 (549)
T 3g7s_A           18 KISLADRIDAAAEKFGEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVMTIYAL   97 (549)
T ss_dssp             CCCTTHHHHHHHHHHTTSEEEEEESSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhCCCceEEEeCCCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHH
Confidence            467899999999999999999874           899 99999999999999999999999999999999999999999


Q ss_pred             hhcCceeeeecCCcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCCcceEEecCCCCCCCccCCCccccccccCCcC
Q psy8225         114 SKIGVVAAFINTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEV  193 (479)
Q Consensus       114 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (479)
                      +++|++++|++|.++.+++.+++++++++++|++......+.......+...+++.+..          ...+.++....
T Consensus        98 ~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~  167 (549)
T 3g7s_A           98 WRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEKTGVERVFVVGGE----------VNSLSEVMDSG  167 (549)
T ss_dssp             HHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTTSCCCEEEEETCS----------SSCHHHHHHHS
T ss_pred             HHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhhCCCcEEEEeCCC----------CcCHHHHHhcC
Confidence            99999999999999999999999999999999999887777766655543334433321          12233333322


Q ss_pred             CCCCCcccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcCCCCCCeEEEeccchhhhhhHHHHHHHHh
Q psy8225         194 SAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLL  273 (479)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~  273 (479)
                      .......  ....++++++|+|||||||.||||+++|+++...+......+++..+|++++.+|++|.+++.. ++.++.
T Consensus       168 ~~~~~~~--~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~-~~~~l~  244 (549)
T 3g7s_A          168 SEDFENV--KVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHMDTIVGCMPMFHSAEFGL-VNLMVT  244 (549)
T ss_dssp             CSCCCCC--CCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHHCCCTTCEEECCSCTTSHHHHHH-HTTHHH
T ss_pred             ccccccc--cCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHcCCCCCCEEEEeCcHHHHHHHHH-HHHHHh
Confidence            2211111  1223388999999999999999999999999999988888889999999999999999998755 677889


Q ss_pred             cCceEEecCCCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCC--CCCCceeEEE--ecCCChhhHHHHHHH----h
Q psy8225         274 GGSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPE--DTQHSVKMMI--GNGLRPQVWEPFQKR----F  345 (479)
Q Consensus       274 ~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~--~~l~~lr~~~--G~~l~~~~~~~~~~~----~  345 (479)
                      .|+++++.+.+++..+++.++++++|++.++|++++.|++......  ..++++|.+.  |+++++++.+++.+.    +
T Consensus       245 ~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~  324 (549)
T 3g7s_A          245 VGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSYLKVFATGAWPVAPALVEKLLKLAAEKC  324 (549)
T ss_dssp             HCCEEEEESSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCCCCCCTTCCEEEEESSCCCHHHHHHHHHHHHHHS
T ss_pred             cCceEEEcCCCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcccCCccceeEEEeCCccCCHHHHHHHHHHHHhhc
Confidence            9999999999999999999999999999999999999887643322  4678999877  789999999999988    6


Q ss_pred             C---cceeeeeccccccCcccccCC----CCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEE
Q psy8225         346 G---LDRICEFYGATEGNANLMNAD----GKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILI  418 (479)
Q Consensus       346 ~---~~~v~~~YG~tE~~~~~~~~~----~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~  418 (479)
                      +   . ++++.||+||++.+++...    ...+++|+|++      +++++++|+++++          +|+.|+.|||+
T Consensus       325 ~~~~~-~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~------~~~~~i~d~~~g~----------~~~~g~~GEl~  387 (549)
T 3g7s_A          325 NNPRL-RHNQIWGMTEACPMVTTNPPLRLDKSTTQGVPMS------DIELKVISLEDGR----------ELGVGESGEIV  387 (549)
T ss_dssp             SCTTC-EEEEEEECGGGSSEEEECCGGGGGGTTSCCEECT------TCEEEEECSSSCC----------EECTTCCEEEE
T ss_pred             CCccc-cccceEeccccchhhhcCCccccCcCCCccccCC------CCEEEEEeCCCCc----------CCCCCCceEEE
Confidence            6   5 8999999999987665332    34566677655      8999999977777          67999999999


Q ss_pred             EEeecCCcccccccccCcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         419 GMIKESRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       419 v~~~~~~~~~~~~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                      ++    || +++.|||++++.+.+.|.. ..++++||+|||+|++|+||+|+|+||+||++
T Consensus       388 v~----g~-~v~~GY~~~~~~t~~~f~~-~~~g~~~~~TGDl~~~~~dG~l~~~GR~dd~i  442 (549)
T 3g7s_A          388 IR----GP-NIFKGYWKREKENQECWWY-DEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVI  442 (549)
T ss_dssp             EE----ST-TSCSEETTCTTGGGTSEEE-CTTCCEEEEEEEEEEECTTSCEEEEEEC----
T ss_pred             EE----Cc-chhhhhCCChhhhhhhhhc-cCCCCceEccCcEEEEcCCceEEEeccccceE
Confidence            98    88 9999999998887765410 02234499999999999999999999999986

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A

Probab=100.00  E-value=2.6e-62  Score=497.83  Aligned_cols=394  Identities=18%  Similarity=0.208  Sum_probs=324.6

Q ss_pred             ccchhHHHHHHHhhcCCCccccEEE---Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCcee
Q psy8225          45 LPTYARPLFVRTIREVPMTGAYKYT---VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVA  120 (479)
Q Consensus        45 ~~~~l~~~l~~~~~~~p~~~a~~~~---~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~  120 (479)
                      ...++.++|.++++++|+++|+++.   +|| ||.++++++|+.|+++|+++||+|+++++|++++++++|||+++|+++
T Consensus        23 ~~~tl~~~l~~~a~~~p~~~A~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~  102 (539)
T 1mdb_A           23 AGETFGDLLRDRAAKYGDRIAITCGNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALP  102 (539)
T ss_dssp             CSCCHHHHHHHHHHHHTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHHHTCEE
T ss_pred             cCCCHHHHHHHHHHHCCCCEEEEeCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCeEE
Confidence            3467999999999999999999986   999 999999999999999999999999999999999999999999999999


Q ss_pred             eeecCCcchHHHHHHHHhccceEEEeChhhH-----HHHHHhhccCCcceEE-ecCCCCCCCccCCCccccccccCCcCC
Q psy8225         121 AFINTNQRQHILIHSIKVAECKAIIYGAELS-----EALTEVKDSIPGISLY-AAGTRRKPQAKVLPSTTLLDEELPEVS  194 (479)
Q Consensus       121 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (479)
                      +|++|.++.+++.+++++++++++|++.+..     ..+..+....+.++.+ +.+...           .+.++.....
T Consensus       103 vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~  171 (539)
T 1mdb_A          103 VFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAE-----------EFLPLEDLHT  171 (539)
T ss_dssp             EECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCT-----------TSEEGGGCCC
T ss_pred             ecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCCccEEEEcCCcc-----------chhhhhhccc
Confidence            9999999999999999999999999976431     2333333334443322 222111           1222221111


Q ss_pred             CCCCcccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcCCCCCCeEEEeccchhhhhhHH-HHHHHHh
Q psy8225         195 AKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLL-GIGQCLL  273 (479)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~-~~~~~l~  273 (479)
                      ....   .....++++++++|||||||.||||+++|+++...+......+++..+|++++.+|++|.+++.. .++.++.
T Consensus       172 ~~~~---~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~  248 (539)
T 1mdb_A          172 EPVK---LPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLY  248 (539)
T ss_dssp             CCCC---CCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHH
T ss_pred             cccc---cCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhhCCCCCCEEEEeecccccchhhHHHHHHHHH
Confidence            1101   13446789999999999999999999999999998888878888999999999999999999765 6888999


Q ss_pred             cCceEEecCCCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEE--ecCCChhhHHHHHHHhCcceee
Q psy8225         274 GGSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRIC  351 (479)
Q Consensus       274 ~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~--G~~l~~~~~~~~~~~~~~~~v~  351 (479)
                      .|+++++.+.+++..+++.++++++|++.++|+++..|++........+++||.++  |+++++++.+++++.+|. +++
T Consensus       249 ~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~-~~~  327 (539)
T 1mdb_A          249 AGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVFGC-TLQ  327 (539)
T ss_dssp             TTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSCCCHHHHTTHHHHTCS-EEE
T ss_pred             hCCEEEECCCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCCCccceeEEEEcCCCCCHHHHHHHHHHhCC-cEE
Confidence            99999999999999999999999999999999999998876544445678999876  899999999999999998 999


Q ss_pred             eeccccccCcccccCCC----CCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCcc
Q psy8225         352 EFYGATEGNANLMNADG----KVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAE  427 (479)
Q Consensus       352 ~~YG~tE~~~~~~~~~~----~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~  427 (479)
                      +.||+||++..+...+.    ..+++|+|++.     ..+++++|++ ++          +|++|+.|||+++    || 
T Consensus       328 ~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~-----~~~~~i~d~~-~~----------~~~~g~~GEl~v~----g~-  386 (539)
T 1mdb_A          328 QVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSP-----YDESRVWDDH-DR----------DVKPGETGHLLTR----GP-  386 (539)
T ss_dssp             EEEECTTSCEEECCTTSCHHHHHHCCCEESST-----TCEEEEECTT-SC----------BCCTTCCEEEEEE----CT-
T ss_pred             EEEcCCCCcccccCCCCcHHhcCCCCCcccCC-----CceEEEECCC-CC----------CCcCCCcceEEee----Cc-
Confidence            99999997644433221    23567776541     2468888854 44          6799999999998    88 


Q ss_pred             cccccccCcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         428 SHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       428 ~~~~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                      +++.|||++++.+.+.|.     .+|||+|||+|++|+||+|+|+||+||++
T Consensus       387 ~v~~GY~~~~~~t~~~f~-----~~g~~~TGDlg~~~~dG~l~~~GR~dd~i  433 (539)
T 1mdb_A          387 YTIRGYYKAEEHNAASFT-----EDGFYRTGDIVRLTRDGYIVVEGRAKDQI  433 (539)
T ss_dssp             TSCSSCTTCHHHHHHHBC-----TTSCEEEEEEEEECTTSCEEEEEEGGGCE
T ss_pred             ccchhhcCChhhhhhhcc-----CCCCeecCceEEECCCCcEEEeccccceE
Confidence            999999999988887664     27999999999999999999999999985

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*

Probab=100.00  E-value=8.6e-62  Score=494.67  Aligned_cols=400  Identities=19%  Similarity=0.242  Sum_probs=328.8

Q ss_pred             chhHH-HHHHHhhcCCCccccEE---E--Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCce
Q psy8225          47 TYARP-LFVRTIREVPMTGAYKY---T--VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVV  119 (479)
Q Consensus        47 ~~l~~-~l~~~~~~~p~~~a~~~---~--~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~  119 (479)
                      .++.+ +|.++++++ +++|+++   .  +|| ||.++++++|+.|+++|+++||+|+++++|++++++++|||+++|++
T Consensus        25 ~~l~~~~l~~~~~~~-~~~A~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~la~~~~Gav  103 (548)
T 2d1s_A           25 AGTQLRKYMERYAKL-GAIAFTNAVTGVDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVG  103 (548)
T ss_dssp             HHHHHHHHHHHHHHH-TCEEEEETTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHHHHTCE
T ss_pred             CcHHHHHHHhhhccc-CCceEEEcCCCCEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhhCCE
Confidence            46888 888889999 9999997   2  999 99999999999999999999999999999999999999999999999


Q ss_pred             eeeecCCcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCC-cceEEecCCCCCCCccCCCccccccccCCcCCCC-C
Q psy8225         120 AAFINTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIP-GISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAK-S  197 (479)
Q Consensus       120 ~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  197 (479)
                      ++|+++.++.+++.+++++++++++|++.+....+..+....+ ...++.++....     ......++++....... .
T Consensus       104 ~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~  178 (548)
T 2d1s_A          104 VAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVD-----YRGYQCLDTFIKRNTPPGF  178 (548)
T ss_dssp             EEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHHHHSTTCCEEEETTCSSC-----BTTBCBHHHHHHHTSCTTC
T ss_pred             EeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHhcCCCCCCEEEEeCCccc-----ccccccHHHHHhcCccccC
Confidence            9999999999999999999999999999887766655544444 233444432210     00112233333222111 1


Q ss_pred             Cccccc--CC-CCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhh---cCCCCCCeEEEeccchhhhhhHHHHHHH
Q psy8225         198 PTEDIK--KN-KPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQ---TGLTSDDVVYTTLPLYHTAGGLLGIGQC  271 (479)
Q Consensus       198 ~~~~~~--~~-~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~---~~~~~~d~~~~~~pl~h~~g~~~~~~~~  271 (479)
                      ......  .. ..+++++|+|||||||.||||+++|+++...+......   +++..+|++++.+|++|.+|+...++.+
T Consensus       179 ~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~  258 (548)
T 2d1s_A          179 QASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYL  258 (548)
T ss_dssp             CGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHH
T ss_pred             CcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHHHHHHH
Confidence            110000  01 23889999999999999999999999999887776655   6788999999999999999986667777


Q ss_pred             HhcCceEEecCCCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEE--ecCCChhhHHHHHHHhCcce
Q psy8225         272 LLGGSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDR  349 (479)
Q Consensus       272 l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~--G~~l~~~~~~~~~~~~~~~~  349 (479)
                      + .|+++++.+.+++..+++.|+++++|++.++|++++.|.+........+++||.++  |+++++++.+++.+.++...
T Consensus       259 l-~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~  337 (548)
T 2d1s_A          259 I-CGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPG  337 (548)
T ss_dssp             H-TTCEEEECCCCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGGGSCCTTCCEEEECSSCCCHHHHHHHHHHTTCSC
T ss_pred             h-cCcEEEEcCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcccccccccceeEEEEcCccCCHHHHHHHHHHcCCCc
Confidence            7 99999999999999999999999999999999999999987665555688999876  89999999999999995448


Q ss_pred             eeeeccccccCcccccC---CCCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCc
Q psy8225         350 ICEFYGATEGNANLMNA---DGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRA  426 (479)
Q Consensus       350 v~~~YG~tE~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~  426 (479)
                      +++.||+||++..+...   ..+.+++|+|+|      +++++++|+++++          ++++|+.|||+++    |+
T Consensus       338 i~~~YG~TE~~~~~~~~~~~~~~~~~~G~~~~------~~~~~i~d~~~~~----------~~~~g~~GEl~v~----g~  397 (548)
T 2d1s_A          338 VRQGYGLTETTSAIIITPEGDDKPGASGKVVP------LFKAKVIDLDTKK----------SLGPNRRGEVCVK----GP  397 (548)
T ss_dssp             CEEEEECGGGSSEEEECCTTCCCTTCCBEECT------TCEEEEECTTTCC----------BCCTTCCEEEEEE----ST
T ss_pred             eeeccccccccceeeecCcccCCCCCCCccCC------CceEEEEeCCcCc----------cCCCCCCeEEEEC----CH
Confidence            99999999998665432   234567777665      7999999977676          6789999999998    88


Q ss_pred             ccccccccCcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         427 ESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       427 ~~~~~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                       +++.|||++++.+.+.|.     .+|||+|||+|++|+||+|+|+||+||++
T Consensus       398 -~v~~GY~~~~~~t~~~f~-----~~g~~~TGDl~~~~~dG~l~~~GR~~d~i  444 (548)
T 2d1s_A          398 -MLMKGYVNNPEATKELID-----EEGWLHTGDIGYYDEEKHFFIVDRLKSLI  444 (548)
T ss_dssp             -TSCSEETTCHHHHHHHBC-----TTSCEEEEEEEEECTTCCEEEEEEGGGCB
T ss_pred             -HHhhhhcCChHHhhhccc-----CCcEEEccCEEEEcCCCeEEEeccccceE
Confidence             999999999988877663     37999999999999999999999999985

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*

Probab=100.00  E-value=1.8e-61  Score=491.80  Aligned_cols=393  Identities=19%  Similarity=0.222  Sum_probs=321.8

Q ss_pred             ccchhHHHHHHHhhcCCCccccEE------E-Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhc
Q psy8225          45 LPTYARPLFVRTIREVPMTGAYKY------T-VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKI  116 (479)
Q Consensus        45 ~~~~l~~~l~~~~~~~p~~~a~~~------~-~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~  116 (479)
                      .+.++.++|.++++++|+++|+++      . +|| ||.++++++|+.|+++|+++||+|+++++|++++++++|||+++
T Consensus        16 ~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~   95 (541)
T 1v25_A           16 EELNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGM   95 (541)
T ss_dssp             CCCCTHHHHHHHHHHSTTCEEEEECTTSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHhCCCceEEEEecCCCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhc
Confidence            346799999999999999999984      2 999 99999999999999999999999999999999999999999999


Q ss_pred             CceeeeecCCcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCCcce-EEecCCCCCCCccCCCccccccccCCcCCC
Q psy8225         117 GVVAAFINTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGIS-LYAAGTRRKPQAKVLPSTTLLDEELPEVSA  195 (479)
Q Consensus       117 G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (479)
                      |++++|++|.++.+++.+++++++++++|++.+....+..+....+.++ +++.+....      .....+++++.....
T Consensus        96 Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~  169 (541)
T 1v25_A           96 GAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAP------EGYLAYEEALGEEAD  169 (541)
T ss_dssp             TCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCSSCCEEEESSSCCC------TTCEEHHHHCCSCCC
T ss_pred             CcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHHhhCCCccEEEEecCCCC------cccccHHHHhhccCC
Confidence            9999999999999999999999999999999888777766655555443 333332210      112234444332221


Q ss_pred             CCCcccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhh--hhhhcCCCCCCeEEEeccchhhhhhHHHHHHHHh
Q psy8225         196 KSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAIS--GRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLL  273 (479)
Q Consensus       196 ~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~--~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~  273 (479)
                      .      ....++++++|+|||||||.||||+++|+++......  ....+++..+|++++.+|++|.+++ ..++.++.
T Consensus       170 ~------~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~-~~~~~~l~  242 (541)
T 1v25_A          170 P------VRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAW-CLPYAATL  242 (541)
T ss_dssp             C------CCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHH-THHHHHHH
T ss_pred             c------ccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccccCCCCCEEEEeccchhhhHH-HHHHHHHh
Confidence            1      2345688999999999999999999999999876654  2345678899999999999999987 44667889


Q ss_pred             cCceEEecC-CCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEE--ecCCChhhHHHHHHHhCccee
Q psy8225         274 GGSTVVIRS-KFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRI  350 (479)
Q Consensus       274 ~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~--G~~l~~~~~~~~~~~~~~~~v  350 (479)
                      .|+++++.+ .+++..+++.++++++|++.++|+++..|.+........+++||.++  |+++++++.++| +.++. ++
T Consensus       243 ~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~-~~~g~-~~  320 (541)
T 1v25_A          243 VGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGSAAPRSLIARF-ERMGV-EV  320 (541)
T ss_dssp             HTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCCCSSCCEEEECSSCCCHHHHHHH-HHTTC-EE
T ss_pred             cCceEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccCCcchhccEEEECCCCCCHHHHHHH-HHhCC-ce
Confidence            999999986 47999999999999999999999999998876443344678999876  899999999999 67888 99


Q ss_pred             eeeccccccCcccccCCC--------------CCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccC--CCC
Q psy8225         351 CEFYGATEGNANLMNADG--------------KVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKA--EEP  414 (479)
Q Consensus       351 ~~~YG~tE~~~~~~~~~~--------------~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~--~~~  414 (479)
                      ++.||+||++..++....              ..+++|+|+|      +++++++|++ ++          +++.  ++.
T Consensus       321 ~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~------~~~~~i~d~~-g~----------~~~~~~~~~  383 (541)
T 1v25_A          321 RQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIP------LVRLRVADEE-GR----------PVPKDGKAL  383 (541)
T ss_dssp             EEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECT------TCEEEEECTT-SC----------BCCSSSCCC
T ss_pred             eecccccccccceecccccccccccCccccccccCCCCCcCC------CcEEEEECCC-CC----------CCCCCCCcc
Confidence            999999999876543221              1345666554      8999999965 44          3453  368


Q ss_pred             ceEEEEeecCCcccccccccCcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         415 GILIGMIKESRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       415 Gel~v~~~~~~~~~~~~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                      |||+++    || +++.|||++++.+++.|.     .+|||+|||+|++|+||+|+|+||+||++
T Consensus       384 GEl~v~----g~-~v~~GY~~~p~~t~~~f~-----~~g~~~TGDlg~~d~dG~l~~~GR~~d~i  438 (541)
T 1v25_A          384 GEVQLK----GP-WITGGYYGNEEATRSALT-----PDGFFRTGDIAVWDEEGYVEIKDRLKDLI  438 (541)
T ss_dssp             EEEEEE----ST-TSBSSCBTCHHHHHTTBC-----TTSCEEEEEEEEECTTCCEEEEEESSCEE
T ss_pred             eEEEEe----Cc-chhccccCChhhhhhhcc-----CCCCeEcCCEEEEcCCceEEEeeccccee
Confidence            999998    88 999999999988876653     27899999999999999999999999975

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*

Probab=100.00  E-value=2.5e-61  Score=487.05  Aligned_cols=387  Identities=21%  Similarity=0.245  Sum_probs=315.4

Q ss_pred             chhHHHHHHHhhcCCCccccEEE-----Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCcee
Q psy8225          47 TYARPLFVRTIREVPMTGAYKYT-----VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVA  120 (479)
Q Consensus        47 ~~l~~~l~~~~~~~p~~~a~~~~-----~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~  120 (479)
                      .++.++|+++++++|+++|+.+.     +|| ||.++++++|+.|+++|+++||+|+++++|++++++++|||+++|+++
T Consensus         2 ~tl~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~   81 (504)
T 1t5h_X            2 QTVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVP   81 (504)
T ss_dssp             CCHHHHHHHHHHHCTTSEEEEETTTTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHHTCEE
T ss_pred             CcHHHHHHHHHHhCCCceEEEEcCCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCcEE
Confidence            35889999999999999999864     999 999999999999999999999999999999999999999999999999


Q ss_pred             eeecCCcchHHHHHHHHhccceEEEe--ChhhHHHH-HHhhccCCcceEEecCCCCCCCccCCCccccccccCCcCCC--
Q psy8225         121 AFINTNQRQHILIHSIKVAECKAIIY--GAELSEAL-TEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSA--  195 (479)
Q Consensus       121 v~l~~~~~~~~l~~~l~~~~~~~vi~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  195 (479)
                      +|++|.++.+++.+++++++++++|+  +......+ ...    +.++++.                 ++++......  
T Consensus        82 vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~----~~~~~~~-----------------~~~~~~~~~~~~  140 (504)
T 1t5h_X           82 ALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSG----SGARIIF-----------------LGDLVRDGEPYS  140 (504)
T ss_dssp             EEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHHHHC----CCCEEEE-----------------GGGTEETTEECC
T ss_pred             EecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhhhcc----ccceeEE-----------------ecchhhcCcccc
Confidence            99999999999999999999999999  66554443 221    2233221                 1111111000  


Q ss_pred             CCCcccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcCC--CCCCeEEEeccchhhhhhHHHHHHHHh
Q psy8225         196 KSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGL--TSDDVVYTTLPLYHTAGGLLGIGQCLL  273 (479)
Q Consensus       196 ~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~--~~~d~~~~~~pl~h~~g~~~~~~~~l~  273 (479)
                      ...........++++++|+|||||||.||||+++|+++...+......+++  ..++++++.+|++|.+|+...++.++.
T Consensus       141 ~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~  220 (504)
T 1t5h_X          141 YGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALA  220 (504)
T ss_dssp             CSCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTTCCCSSTTCEEEECSCTTSHHHHTTTHHHHHH
T ss_pred             cCCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhhCCCCCCCceEEeecchhhcchHHHHHHHHHH
Confidence            000000023457899999999999999999999999999888877777777  888999999999999998777888999


Q ss_pred             cCceEEecCCCChhHHHHHHHHhcccEEEEehHHHHHHhcCCC--CCCCCCCceeEEE--ecCCChhhHHHHHHHhCcce
Q psy8225         274 GGSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPE--KPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDR  349 (479)
Q Consensus       274 ~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~--~~~~~l~~lr~~~--G~~l~~~~~~~~~~~~~~~~  349 (479)
                      .|+++++.+.+++..+++.|+++++|++.++|++++.|.+...  .....+++||.++  |+++++++.+++++.++. .
T Consensus       221 ~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~-~  299 (504)
T 1t5h_X          221 LDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPG-E  299 (504)
T ss_dssp             TTCEEEECSSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTTCCCCCTTCCEEEECCTTCCHHHHHHHHHHCCS-E
T ss_pred             cCceEEeCCCCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhccccccccCccccEEEEcCCcCCHHHHHHHHHhcCc-c
Confidence            9999999999999999999999999999999999999987542  2334578999877  899999999999999998 8


Q ss_pred             eeeeccccccCcccccCCCCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCcccc
Q psy8225         350 ICEFYGATEGNANLMNADGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESH  429 (479)
Q Consensus       350 v~~~YG~tE~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~  429 (479)
                      +++.||+||++........+.+++|.|.+      +++++++|++.+.        ..+|+.|+.|||+++   .|+ ++
T Consensus       300 ~~~~YG~TE~~~~~~~~~~~~~~~g~p~~------~~~~~i~~~~~~~--------~~~~~~g~~GEl~v~---gg~-~~  361 (504)
T 1t5h_X          300 KVNIYGTTEAMNSLYMRQPKTGTEMAPGF------FSEVRIVRIGGGV--------DEIVANGEEGELIVA---ASD-SA  361 (504)
T ss_dssp             EEEEEEETTTEEEEEEESCSSSSEEBCCT------TCCEEEECTTSCT--------TCBCCTTCCEEEEEE---CCT-TS
T ss_pred             eeeeeccccccccccccCCCCCccccCCC------CCceeEEeccCCC--------CCcCCCCCcceEEEe---CCc-ee
Confidence            99999999994333333445677777665      6889998865321        026789999999997   134 89


Q ss_pred             cccccCcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         430 FNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       430 ~~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                      +.||+++++.+.+.|.      +|||+|||+|++|+||+|+|+||+||++
T Consensus       362 ~~GY~~~~~~t~~~f~------~g~~~TGDlg~~~~dG~l~~~GR~dd~i  405 (504)
T 1t5h_X          362 FVGYLNQPQATAEKLQ------DGWYRTSDVAVWTPEGTVRILGRVDDMI  405 (504)
T ss_dssp             CCCBTTCHHHHHHHEE------TTEEEEEEEEEECTTSCEEEEEEGGGCE
T ss_pred             eceecCCchhhhhhhc------CCccccCcEEEECCCceEEEeCcccCEE
Confidence            9999999988887764      7899999999999999999999999985

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A

Probab=100.00  E-value=7.4e-62  Score=491.94  Aligned_cols=391  Identities=23%  Similarity=0.311  Sum_probs=323.1

Q ss_pred             hcccchhHHHHHHHhhcCCCccccEEE-----Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhc
Q psy8225          43 KTLPTYARPLFVRTIREVPMTGAYKYT-----VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKI  116 (479)
Q Consensus        43 ~~~~~~l~~~l~~~~~~~p~~~a~~~~-----~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~  116 (479)
                      .....++.++|+++++.+|+++|+++.     +|| ||.++++++|..|+++|+++||+|+++++|++++++++|||+++
T Consensus        12 ~~~~~~l~~~l~~~a~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~   91 (517)
T 3r44_A           12 DDKMKNIGWMLRQRATVSPRLQAYVEPSTDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKL   91 (517)
T ss_dssp             CGGGGCHHHHHHHHHHHSTTSEEEEEGGGTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHH
T ss_pred             cccccCHHHHHHHHHHhCCCCeEEEeCCcCceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHHHHHHHHh
Confidence            345577999999999999999999975     999 99999999999999999999999999999999999999999999


Q ss_pred             CceeeeecCCcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCCcce-EEecCCCCCCCccCCCccccccccCCcCCC
Q psy8225         117 GVVAAFINTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGIS-LYAAGTRRKPQAKVLPSTTLLDEELPEVSA  195 (479)
Q Consensus       117 G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (479)
                      |++++|++|.++.+++.+++++++++++|++....+.+..+....+... ++...           ....+.+.+.....
T Consensus        92 G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~  160 (517)
T 3r44_A           92 GAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDWI-----------GADSLAERLRSAAA  160 (517)
T ss_dssp             TCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSSSCCTTCCEEE-----------EHHHHHHHHHHCCC
T ss_pred             CcEEEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhccCCccEEEEcc-----------CcccHHHHhhccCc
Confidence            9999999999999999999999999999999887776666544332111 10000           00112222221111


Q ss_pred             CCCcccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcCCCCCCeEEEeccchhhhhhHHHHHHHHhcC
Q psy8225         196 KSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGG  275 (479)
Q Consensus       196 ~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G  275 (479)
                      ..+   .....++++++|+|||||||.||||+++|+++...+......+++..+|++++.+|++|.+++...++..+ .|
T Consensus       161 ~~~---~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~~-~G  236 (517)
T 3r44_A          161 DEP---AVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALTTVIFSAM-RG  236 (517)
T ss_dssp             CCC---CCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHSCCCTTCEEEECSCTTSHHHHHHHHHHHH-HT
T ss_pred             CCC---CCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHHHHHHHh-cC
Confidence            111   13456789999999999999999999999999999988888889999999999999999999865555455 89


Q ss_pred             ceEEecCCCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEE--ecCCChhhHHHHHHHhCcceeeee
Q psy8225         276 STVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEF  353 (479)
Q Consensus       276 ~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~--G~~l~~~~~~~~~~~~~~~~v~~~  353 (479)
                      +++++.+.+++..+++.++++++|++.++|++++.|.+........+++||.++  |+++++++.+++.+. +. ++++.
T Consensus       237 ~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~-~~-~~~~~  314 (517)
T 3r44_A          237 VTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELDAPDFRYFITGGAPMPEALIKIYAAK-NI-EVVQG  314 (517)
T ss_dssp             CEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHHHCCCTTCCEEEECSSCCCHHHHHHHHHT-TC-EEEEE
T ss_pred             eEEEEeCCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccccCCCCcccEEEECCCCCCHHHHHHHHhc-CC-cEEEe
Confidence            999999999999999999999999999999999999887655555678999877  899999999999887 77 99999


Q ss_pred             ccccccCccccc-----CCCCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCccc
Q psy8225         354 YGATEGNANLMN-----ADGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAES  428 (479)
Q Consensus       354 YG~tE~~~~~~~-----~~~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~  428 (479)
                      ||+||+++.++.     .....+++|+|.+      +++++++|++ +.          +++.| .|||+++    |+ +
T Consensus       315 YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~------~~~~~i~d~~-~~----------~~~~g-~GEl~v~----g~-~  371 (517)
T 3r44_A          315 YALTESCGGGTLLLSEDALRKAGSAGRATM------FTDVAVRGDD-GV----------IREHG-EGEVVIK----SD-I  371 (517)
T ss_dssp             EECGGGTTCEEEECGGGTTTTTTCCBEECT------TEEEEEECTT-SC----------EESSE-EEEEEEE----ET-T
T ss_pred             ecccccccceeecCCccccccCCCCCcCCC------CeEEEEECCC-CC----------CCCCC-CeEEEEe----Cc-c
Confidence            999999865432     1345677777665      7899988854 44          45677 8999998    77 9


Q ss_pred             ccccccCcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         429 HFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       429 ~~~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                      ++.|||++++.+.+.|.      +|||+|||+|++|+||+|+|+||+||++
T Consensus       372 v~~GY~~~p~~t~~~f~------~g~~~TGDl~~~~~dG~l~~~GR~dd~i  416 (517)
T 3r44_A          372 LLKEYWNRPEATRDAFD------NGWFRTGDIGEIDDEGYLYIKDRLKDMI  416 (517)
T ss_dssp             SCSEETTCHHHHHHTEE------TTEEEEEEEEEECTTSCEEEEECGGGCE
T ss_pred             hhhhhCCChhhhHhhhc------CCCEecceeEEEcCCeeEEEecCCcCEE
Confidence            99999999998887764      8999999999999999999999999985

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1

Probab=100.00  E-value=4.4e-61  Score=498.64  Aligned_cols=407  Identities=21%  Similarity=0.290  Sum_probs=326.3

Q ss_pred             cchhHHHHHHHhhcCCCccccEE--------E-Eeh-hhHHHHHHHHHHHH-HcCCCCCCEEEEEcCCchHHHHHHHHhh
Q psy8225          46 PTYARPLFVRTIREVPMTGAYKY--------T-VTF-QVEDHSNRIANFFK-SKGLQRGDAVALFMEGQPEYVCMWLGLS  114 (479)
Q Consensus        46 ~~~l~~~l~~~~~~~p~~~a~~~--------~-~Ty-~l~~~~~~la~~L~-~~gi~~gd~V~i~~~n~~e~~~~~lA~~  114 (479)
                      .+++.++|+++++++|+++|+++        . +|| ||.++++++|+.|+ ++|+++||+|+|+++|++++++++|||+
T Consensus        81 ~n~~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a~lA~~  160 (663)
T 1ry2_A           81 LNACYNCVDRHALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAIS  160 (663)
T ss_dssp             ECHHHHHTHHHHTTCTTSEEEEEECSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHhccCCCceEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHH
Confidence            37889999999999999999998        1 999 99999999999999 8999999999999999999999999999


Q ss_pred             hcCceeeeecCCcchHHHHHHHHhccceEEEeChhh---------HHHHHHhhccCCcce-EEecCCCCCCCccC-CCcc
Q psy8225         115 KIGVVAAFINTNQRQHILIHSIKVAECKAIIYGAEL---------SEALTEVKDSIPGIS-LYAAGTRRKPQAKV-LPST  183 (479)
Q Consensus       115 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~  183 (479)
                      ++|++++|+++.++.+++.++++++++++||+++..         ...+.++....+.+. ++++.......... ....
T Consensus       161 ~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~  240 (663)
T 1ry2_A          161 RIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVAFHAPRD  240 (663)
T ss_dssp             HTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSCCCCSSSE
T ss_pred             HcCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCCCCceEEEEecCCCCccccCCCcc
Confidence            999999999999999999999999999999997653         223444444444433 33333211000000 0112


Q ss_pred             ccccccCCcCCCCCCcccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhh-hhhhhcCCCCCCeEEEeccchhhh
Q psy8225         184 TLLDEELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAI-SGRYQTGLTSDDVVYTTLPLYHTA  262 (479)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~-~~~~~~~~~~~d~~~~~~pl~h~~  262 (479)
                      ..|.+++........   .....++++++|+|||||||.||||+++|++++..+. .....+++.++|++++..|++|..
T Consensus       241 ~~~~~~~~~~~~~~~---~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  317 (663)
T 1ry2_A          241 LDWATEKKKYKTYYP---CTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWIT  317 (663)
T ss_dssp             EEHHHHHTTSCSCCC---CCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECSCTTSHH
T ss_pred             ccHHHHHhhcCCCCC---ccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhcCCCCCcEEEEcCCcHHhh
Confidence            234444332221111   1334578999999999999999999999999876654 444567889999999999999999


Q ss_pred             hhHHHHHHHHhcCceEEecCC----CChhHHHHHHHHhcccEEEEehHHHHHHhcCCCC--CCCCCCceeEEE--ecCCC
Q psy8225         263 GGLLGIGQCLLGGSTVVIRSK----FSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEK--PEDTQHSVKMMI--GNGLR  334 (479)
Q Consensus       263 g~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~--~~~~l~~lr~~~--G~~l~  334 (479)
                      |..+.++.++..|+++++.+.    +++..+++.|+++++|+++++|++++.|.+....  ...++++||.++  |++++
T Consensus       318 g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~  397 (663)
T 1ry2_A          318 GHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIA  397 (663)
T ss_dssp             HHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSSCCC
T ss_pred             hhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCccccccCCcCceEEEEEEcCCCC
Confidence            987778899999999998764    5899999999999999999999999999887642  344688999877  89999


Q ss_pred             hhhHHHHHHHhC---cceeeeeccccccCcccccC------CCCCCcccccCccccCCCceeeEEeCCCCCCccccCCCc
Q psy8225         335 PQVWEPFQKRFG---LDRICEFYGATEGNANLMNA------DGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGL  405 (479)
Q Consensus       335 ~~~~~~~~~~~~---~~~v~~~YG~tE~~~~~~~~------~~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~  405 (479)
                      +++++++.+.+|   + ++++.||+||+++.+...      +.+++++|+|++      +++++++|+++|+        
T Consensus       398 ~~~~~~~~~~~g~~~~-~i~~~YG~TE~~~~~~~~~~~~~~~~~~gs~G~p~~------g~~v~i~d~~~g~--------  462 (663)
T 1ry2_A          398 AEVWEWYSEKIGKNEI-PIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFF------GIDAVVLDPNTGE--------  462 (663)
T ss_dssp             HHHHHHHHHTTSCSSS-CEEECBCCTTTCSCSEECCTTTCCCCCTTCCCEECT------TCCEEEECSSSTT--------
T ss_pred             HHHHHHHHHHhCCCCc-eEEEeECCccccCeeeccCCCCCcccCCCccccCcC------CCeEEEEcCCCCC--------
Confidence            999999999998   6 899999999998654321      235677777665      8999999975676        


Q ss_pred             cccccC-CCCceEEEEeecCCc-ccccccccCcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         406 CIPCKA-EEPGILIGMIKESRA-ESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       406 ~~~~~~-~~~Gel~v~~~~~~~-~~~~~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                        +++. |+.|||+++    || ++++.|||++++.+.+.+   +...+|||+|||+|++|+||+|+|+||+||++
T Consensus       463 --~v~~~g~~Gel~i~----g~~p~~~~gy~~~~~~~~~~~---~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~I  529 (663)
T 1ry2_A          463 --ELNTSHAEGVLAVK----AAWPSFARTIWKNHDRYLDTY---LNPYPGYYFTGDGAAKDKDGYIWILGRVDDVV  529 (663)
T ss_dssp             --CEECSSCEEEEEES----SCCTTSCCEETTCHHHHHHHH---TSSSTTSEEEEEEEEECTTCCEEECSCTTSCB
T ss_pred             --cCCCCCcceEEEEe----cCCCchhcccccChHHHHHhh---hcCCCCEEEcCCEEEEcCCCCEEEEeecCCEE
Confidence              4566 889999998    64 289999999987665543   23347899999999999999999999999985

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*

Probab=100.00  E-value=3.8e-61  Score=498.96  Aligned_cols=405  Identities=18%  Similarity=0.222  Sum_probs=323.7

Q ss_pred             chhHHHHHHHhhcCCCccccEE--------E-Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhc
Q psy8225          47 TYARPLFVRTIREVPMTGAYKY--------T-VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKI  116 (479)
Q Consensus        47 ~~l~~~l~~~~~~~p~~~a~~~--------~-~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~  116 (479)
                      +++.++|+++++++|+++|+++        . +|| ||.++++++|+.|+++|+++||+|+|+++|++++++++|||+++
T Consensus        76 n~~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~  155 (652)
T 1pg4_A           76 NLAANCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARI  155 (652)
T ss_dssp             CHHHHHTGGGHHHHTTSEEEEEECSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHhccCCCceEEEEEcCCCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHc
Confidence            6788999999999999999997        2 999 99999999999999999999999999999999999999999999


Q ss_pred             CceeeeecCCcchHHHHHHHHhccceEEEeChhhH---------HHHHHhhccCC--cc-eEEecCCCCCCCccCCCccc
Q psy8225         117 GVVAAFINTNQRQHILIHSIKVAECKAIIYGAELS---------EALTEVKDSIP--GI-SLYAAGTRRKPQAKVLPSTT  184 (479)
Q Consensus       117 G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~  184 (479)
                      |++++|+++.++.+++.++++++++++||+++...         ..+.++....+  .+ +++++...............
T Consensus       156 Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~  235 (652)
T 1pg4_A          156 GAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDL  235 (652)
T ss_dssp             TCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCCCCBTTEE
T ss_pred             CcEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCCcccccCCCce
Confidence            99999999999999999999999999999976432         23333333322  22 23433321100000001122


Q ss_pred             cccccCCcCCCCCCcccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhh-hhhhhcCCCCCCeEEEeccchhhhh
Q psy8225         185 LLDEELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAI-SGRYQTGLTSDDVVYTTLPLYHTAG  263 (479)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~-~~~~~~~~~~~d~~~~~~pl~h~~g  263 (479)
                      .|++++........   .....++++++|+|||||||.||||+++|++++..+. .....+++.++|++++.+|++|.+|
T Consensus       236 ~~~~~~~~~~~~~~---~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g  312 (652)
T 1pg4_A          236 WWRDLIEKASPEHQ---PEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTG  312 (652)
T ss_dssp             EHHHHHTTSCSCCC---CCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHH
T ss_pred             eHHHHHhhcCCCCC---ccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhcCCCCCCEEEEccCCeeeec
Confidence            34444433221111   1234578999999999999999999999999876653 4455678899999999999999999


Q ss_pred             hHHHHHHHHhcCceEEecCC----CChhHHHHHHHHhcccEEEEehHHHHHHhcCCC--CCCCCCCceeEEE--ecCCCh
Q psy8225         264 GLLGIGQCLLGGSTVVIRSK----FSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPE--KPEDTQHSVKMMI--GNGLRP  335 (479)
Q Consensus       264 ~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~--~~~~~l~~lr~~~--G~~l~~  335 (479)
                      +.+.++.++..|+++++.+.    +++..+++.|+++++|++.++|++++.|.+...  ....++++||.++  |+++++
T Consensus       313 ~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~  392 (652)
T 1pg4_A          313 HSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINP  392 (652)
T ss_dssp             HHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESSCCCH
T ss_pred             hHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccccccCCcCceEEEEEecCCCCH
Confidence            87778899999999999764    589999999999999999999999999988754  2344688999876  899999


Q ss_pred             hhHHHHHHHhC---cceeeeeccccccCcccccC-----CCCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccc
Q psy8225         336 QVWEPFQKRFG---LDRICEFYGATEGNANLMNA-----DGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCI  407 (479)
Q Consensus       336 ~~~~~~~~~~~---~~~v~~~YG~tE~~~~~~~~-----~~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~  407 (479)
                      ++++++.+.+|   + ++++.||+||+++.+...     +.+++++|+|++      +++++++|++ |+          
T Consensus       393 ~~~~~~~~~~g~~~~-~i~~~YG~TE~~~~~~~~~~~~~~~~~~s~G~p~~------g~~v~i~d~~-g~----------  454 (652)
T 1pg4_A          393 EAWEWYWKKIGKEKC-PVVDTWWQTETGGFMITPLPGAIELKAGSATRPFF------GVQPALVDNE-GH----------  454 (652)
T ss_dssp             HHHHHHHHHTTTTCS-CEEEEBCCGGGSSCSBCCCTTTCCBCTTCCBSBCT------TCCEEEECTT-CC----------
T ss_pred             HHHHHHHHHhCCCCC-cEEccccCcccccceecCCCCCcCccCCccccCcC------CCeEEEECCC-CC----------
Confidence            99999999998   6 899999999998665432     234567777665      8999999964 54          


Q ss_pred             cccCCCCceEEEEeecCCc-ccccccccCcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         408 PCKAEEPGILIGMIKESRA-ESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       408 ~~~~~~~Gel~v~~~~~~~-~~~~~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                      +++.|+.|||+++    |+ ++++.|||++++.+.+.+   |...+|||+|||+|++|+||+|+|+||+||++
T Consensus       455 ~v~~g~~GEl~i~----g~~p~~~~gY~~~~e~~~~~~---~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~I  520 (652)
T 1pg4_A          455 PQEGATEGNLVIT----DSWPGQARTLFGDHERFEQTY---FSTFKNMYFSGDGARRDEDGYYWITGRVDDVL  520 (652)
T ss_dssp             BCCSSEEEEEEEC----SCCTTCCCEETTCHHHHHHHH---HSSSTTSEEEEEEEEECTTSCEEEEEESSSEE
T ss_pred             CcCCCceEEEEEc----cCCCchhhhhcCCHHHHHhhh---hhcCCCEEECCcEEEEcCCCcEEEEecCCCEE
Confidence            6688999999998    73 289999999987665443   23347899999999999999999999999975

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0

Probab=100.00  E-value=9e-61  Score=483.77  Aligned_cols=390  Identities=19%  Similarity=0.238  Sum_probs=316.6

Q ss_pred             ccchhHHHHHHHhhcCCCccccEEE---Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCcee
Q psy8225          45 LPTYARPLFVRTIREVPMTGAYKYT---VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVA  120 (479)
Q Consensus        45 ~~~~l~~~l~~~~~~~p~~~a~~~~---~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~  120 (479)
                      .+.++.++|+++++++|+++|+++.   +|| ||.++++++|+.|+++|+++||+|+++++|++++++++|||+++|+++
T Consensus         4 ~~~tl~~~l~~~a~~~pd~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~   83 (509)
T 3ivr_A            4 HDFTLADVYRRNAALFPDRTAFMVDGVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGAIL   83 (509)
T ss_dssp             TCCCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCEE
T ss_pred             CcCCHHHHHHHHHHHCCCceEEEECCcEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCCEE
Confidence            4578999999999999999999987   999 999999999999999999999999999999999999999999999999


Q ss_pred             eeecCCcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCCcce-EEecCCCCCCCccCCCccccccccCCcCCCCCCc
Q psy8225         121 AFINTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGIS-LYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPT  199 (479)
Q Consensus       121 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (479)
                      +|++|.++.+++.+++++++++++|++.+....+.......+.+. ++..+...          ..+.++......... 
T Consensus        84 vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~-  152 (509)
T 3ivr_A           84 LPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGGVKKAYAIGDGS----------GPFAPFKDLASDTPF-  152 (509)
T ss_dssp             EECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHGGGCSSCCEEEESSCCC----------SSCEEGGGTCCCSCC-
T ss_pred             EecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhhcccCCceEEEEcCCCC----------cChhhHhhccCCCCC-
Confidence            999999999999999999999999999887776555545554443 33333211          112222221111111 


Q ss_pred             ccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcCCCCCCeEEEeccchhhhhhHHHHHHHHhcCceEE
Q psy8225         200 EDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVV  279 (479)
Q Consensus       200 ~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G~~~v  279 (479)
                       ......++++++|+|||||||.||||+++|+++...+......+++.++|++++.+|++|.+|+...+...+..|++++
T Consensus       153 -~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~~~~g~~~~  231 (509)
T 3ivr_A          153 -SAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVI  231 (509)
T ss_dssp             -CCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEE
T ss_pred             -CcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEeCCCcchhHHHHHHHHHHhCCcEEE
Confidence             1145577899999999999999999999999999999888888999999999999999999998665555555555555


Q ss_pred             ecCCCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEEecCCChhhHHHHHHHh-Ccceeeeeccccc
Q psy8225         280 IRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMIGNGLRPQVWEPFQKRF-GLDRICEFYGATE  358 (479)
Q Consensus       280 ~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~G~~l~~~~~~~~~~~~-~~~~v~~~YG~tE  358 (479)
                      + ..+++..+++.++++++|++..+|+++..|++..  ....++++|.+.++.- +++.+.+.+.+ +. ++++.||+||
T Consensus       232 ~-~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~--~~~~l~~lr~~~~~g~-~~~~~~~~~~~~~~-~~~~~YG~TE  306 (509)
T 3ivr_A          232 A-AKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQA--APAQLASLRAVTGLDT-PETIERFEATCPNA-TFWATFGQSE  306 (509)
T ss_dssp             C-SSCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHC--CGGGGTTCCEEEEECC-HHHHHHHHHHCTTC-EEEEEEEEGG
T ss_pred             e-cccCHHHHHHHHHHHCCcEEEecHHHHHHHHhcc--cccchhhhheecccCC-hHHHHHHHHhcCCC-eEEcccCccc
Confidence            5 4889999999999999999999999999998876  3345788998872221 28889999998 55 9999999999


Q ss_pred             cCccccc--CCCCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCcccccccccCc
Q psy8225         359 GNANLMN--ADGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNGYADK  436 (479)
Q Consensus       359 ~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~gY~~~  436 (479)
                      +++.++.  ....+.++|+|++      +++++++|++ ++          +|++|+.|||+++    |+ +++.||+++
T Consensus       307 ~~~~~~~~~~~~~~~~~G~p~~------~~~~~i~d~~-~~----------~~~~g~~GEl~v~----g~-~~~~gY~~~  364 (509)
T 3ivr_A          307 TSGLSTFAPYRDRPKSAGRPLF------WRTVAVVDAE-DR----------PLPPGEVGEIVLR----GP-TVFKGYWNN  364 (509)
T ss_dssp             GTEEEEEEEGGGSTTSCCEECT------TCEEEEECTT-SC----------BCCTTCCEEEEEE----ST-TSCCEETTC
T ss_pred             cccccccCccccCCCcccccCC------CcEEEEECCC-CC----------CCCCCCceEEEEe----cC-CccccccCC
Confidence            9876543  2233445777665      7999999965 44          6799999999998    88 999999999


Q ss_pred             chhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCC--CCCC
Q psy8225         437 KASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRT--GDAC  479 (479)
Q Consensus       437 ~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~--~d~~  479 (479)
                      ++.+.+.|.      +|||+|||+|++|+||+|+|+||+  ||++
T Consensus       365 ~~~t~~~f~------~g~~~TGDl~~~~~dG~l~~~GR~d~~d~i  403 (509)
T 3ivr_A          365 AAATQHAFR------NGWHHTGDMGRFDADGYLFYAGRAPEKELI  403 (509)
T ss_dssp             HHHHHHHTG------GGSEEEEEEEEECTTSCEEEEEEC------
T ss_pred             HHHhHHHhh------cCCcccccEEEECCCceEEEeCCCCcceeE
Confidence            998888775      799999999999999999999999  8765

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*

Probab=100.00  E-value=2e-60  Score=486.23  Aligned_cols=396  Identities=22%  Similarity=0.266  Sum_probs=326.4

Q ss_pred             chhHHHHHHHhhc-----CCCccccEE-------E-Eeh-hhHHHHHHHHHHHHHc-CCCCCCEEEEEcCCchHHHHHHH
Q psy8225          47 TYARPLFVRTIRE-----VPMTGAYKY-------T-VTF-QVEDHSNRIANFFKSK-GLQRGDAVALFMEGQPEYVCMWL  111 (479)
Q Consensus        47 ~~l~~~l~~~~~~-----~p~~~a~~~-------~-~Ty-~l~~~~~~la~~L~~~-gi~~gd~V~i~~~n~~e~~~~~l  111 (479)
                      +++.++|+++++.     +|+++|+++       . +|| ||.++++++|+.|+++ |+++||+|+++++|++++++++|
T Consensus        38 ~~~~~~l~~~a~~~~a~~~p~~~al~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~e~~~~~l  117 (570)
T 3c5e_A           38 NFASDVLDHWADMEKAGKRPPSPALWWVNGKGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVIL  117 (570)
T ss_dssp             CHHHHTHHHHHHHHHTTSSCCCEEEEEECSSSCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCHHHHHHHH
T ss_pred             cHHHHHHHHHHhhccccCCCCceEEEEEcCCCceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCHHHHHHHH
Confidence            5678999999998     999999987       2 999 9999999999999999 99999999999999999999999


Q ss_pred             HhhhcCceeeeecCCcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCCcce-EEecCCCCCCCccCCCccccccccC
Q psy8225         112 GLSKIGVVAAFINTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGIS-LYAAGTRRKPQAKVLPSTTLLDEEL  190 (479)
Q Consensus       112 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  190 (479)
                      ||+++|++++|+++.++.+++.+++++++++++|++.+....+..+....+.++ +++++....      .....+++++
T Consensus       118 A~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~  191 (570)
T 3c5e_A          118 GCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEKSC------DGWLNFKKLL  191 (570)
T ss_dssp             HHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHGGGCTTCCEEEEESSSCC------TTSEEHHHHH
T ss_pred             HHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHhhcCCceeEEEEecccCc------cccccHHHHh
Confidence            999999999999999999999999999999999999887777766665565543 333332110      1122333333


Q ss_pred             CcCCCCCCcccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHH--HhhhhhhhcCCCCCCeEEEeccchhhhhhHHHH
Q psy8225         191 PEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMF--MAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGI  268 (479)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~--~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~  268 (479)
                      ........   .....++++++|+|||||||.||||+++|+ ++.  ..... ..+++..+|++++.+|++|.+++...+
T Consensus       192 ~~~~~~~~---~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~~~~~~d~~~~~~p~~~~~~~~~~~  266 (570)
T 3c5e_A          192 NEASTTHH---CVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWTGLQASDIMWTISDTGWILNILCSL  266 (570)
T ss_dssp             HHSCSCCC---CCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTTSCCTTCEEEECCCTTSHHHHHHTT
T ss_pred             hccccccc---ccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhcCCCCCceEEEcCchHHHHHHHHHH
Confidence            22221111   123467899999999999999999999999 444  33333 567788999999999999999987678


Q ss_pred             HHHHhcCceEEecC--CCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEE--ecCCChhhHHHHHHH
Q psy8225         269 GQCLLGGSTVVIRS--KFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKR  344 (479)
Q Consensus       269 ~~~l~~G~~~v~~~--~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~--G~~l~~~~~~~~~~~  344 (479)
                      +.++..|+++++.+  .+++..+++.|+++++|++.++|++++.|.+.. .....+++||.++  |+++++++.++|.+.
T Consensus       267 ~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~  345 (570)
T 3c5e_A          267 MEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQD-LSSYKFPHLQNCVTVGESLLPETLENWRAQ  345 (570)
T ss_dssp             HHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSC-TTTCCCTTCCEEEEESSCCCHHHHHHHHHH
T ss_pred             HHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhcc-ccccccccceEEEEcCCcCCHHHHHHHHHH
Confidence            88999999999876  689999999999999999999999999998863 2334578899876  899999999999999


Q ss_pred             hCcceeeeeccccccCcccccC---CCCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEe
Q psy8225         345 FGLDRICEFYGATEGNANLMNA---DGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMI  421 (479)
Q Consensus       345 ~~~~~v~~~YG~tE~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~  421 (479)
                      ++. ++++.||+||++..++..   ...++++|+|++      +++++++|++ ++          +|+.|+.|||++++
T Consensus       346 ~g~-~i~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~------~~~v~i~d~~-g~----------~~~~G~~GEl~v~~  407 (570)
T 3c5e_A          346 TGL-DIRESYGQTETGLTCMVSKTMKIKPGYMGTAAS------CYDVQIIDDK-GN----------VLPPGTEGDIGIRV  407 (570)
T ss_dssp             HSC-CCEEEEEETTTEEEEECCTTSCCCTTCCCEECT------TCCEEEECTT-SC----------BCCTTCCEEEEEEC
T ss_pred             hCC-chhhccchhhcccceecCcccccCCCcccccCC------CceEEEECCC-CC----------CCCCCCCCeeEEec
Confidence            998 899999999998665433   245577777665      7899999955 54          67899999999984


Q ss_pred             ec-CCcccccccccCcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         422 KE-SRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       422 ~~-~~~~~~~~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                      .. +|+ +++.||+++++.+.+.|.      +|||+|||+|++|+||+|+|+||+||++
T Consensus       408 ~~~~g~-~v~~GY~~~~~~t~~~f~------~~~~~TGDlg~~d~dG~l~~~GR~dd~I  459 (570)
T 3c5e_A          408 KPIRPI-GIFSGYVDNPDKTAANIR------GDFWLLGDRGIKDEDGYFQFMGRADDII  459 (570)
T ss_dssp             SSBCCT-TCCCEETTCHHHHHHTEE------TTEEEEEEEEEECTTSCEEEEEEGGGCE
T ss_pred             cCCCCc-hhhccccCChhHhhhhhc------CCccccceeEEEcCCceEEEEecCCCEE
Confidence            32 255 899999999988887664      7899999999999999999999999985

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}

Probab=100.00  E-value=2.5e-60  Score=482.82  Aligned_cols=397  Identities=19%  Similarity=0.244  Sum_probs=318.1

Q ss_pred             cchhHHHHHHHhhcCCCccccEEE---Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCceee
Q psy8225          46 PTYARPLFVRTIREVPMTGAYKYT---VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAA  121 (479)
Q Consensus        46 ~~~l~~~l~~~~~~~p~~~a~~~~---~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v  121 (479)
                      .+++.++|+++++ +|+++|+++.   +|| ||.++++++|+.|+++|+++||+|+++++|++++++++|||+++|++++
T Consensus        23 ~~~~~~~l~~~~~-~p~~~A~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v  101 (529)
T 2v7b_A           23 FNFAAYLFRLNET-RAGKTAYIDDTGSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPV  101 (529)
T ss_dssp             CCHHHHHHHHTGG-GTTSEEEECSSCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHHHHHHHHHHTCEEE
T ss_pred             eeHHHHHHHhhhc-cCCceEEEeCCCCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCceEE
Confidence            3668999999999 9999999975   999 9999999999999999999999999999999999999999999999999


Q ss_pred             eecCCcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCCcc--eEEecCCCCCCCccCCCccccccccCCcCCCCCCc
Q psy8225         122 FINTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGI--SLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPT  199 (479)
Q Consensus       122 ~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (479)
                      |+++.++.+++.+++++++++++|++.+....+.......+..  .+++.+.....    ......++++......... 
T Consensus       102 pl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~-  176 (529)
T 2v7b_A          102 VANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQLIVSQPRESE----PRLAPLFEELIDAAAPAAK-  176 (529)
T ss_dssp             ECCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHCC---CCEEEEECC----------CCCBHHHHHHTSCCCSS-
T ss_pred             ecCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHhhccccCceEEEecccccc----cccccchhhhhccCCCccc-
Confidence            9999999999999999999999999988766665554333322  23332221100    0001123333221111111 


Q ss_pred             ccccCCCCCCcEEEEEccCCCCCcceEEeehHHH-HHHhhhhhhhcCCCCCCeEEEeccchhhhhhHHHHHHHHhcCceE
Q psy8225         200 EDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRA-MFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTV  278 (479)
Q Consensus       200 ~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l-~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G~~~  278 (479)
                        .....++++++++|||||||.||||+++|+++ ..........+++..+|++++.+|++|.+|+...++.++..|+++
T Consensus       177 --~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~  254 (529)
T 2v7b_A          177 --AAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLFFAYGLGNGLTFPLSVGATA  254 (529)
T ss_dssp             --CCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCCCCCTTCEEEESSCTTSHHHHHHHTHHHHHHTCEE
T ss_pred             --ccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhccCCCCCcEEEEeecHHHHHHHHHHHHHHHhcCcEE
Confidence              13346789999999999999999999999999 566555555677889999999999999999877777889999999


Q ss_pred             Eec-CCCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEE--ecCCChhhHHHHHHHhCcceeeeecc
Q psy8225         279 VIR-SKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFYG  355 (479)
Q Consensus       279 v~~-~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~--G~~l~~~~~~~~~~~~~~~~v~~~YG  355 (479)
                      ++. +.+++..+++.++++++|++.++|+++..+++..........++|.++  |+++++++.+++++.++. ++++.||
T Consensus       255 v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~g~-~i~~~YG  333 (529)
T 2v7b_A          255 ILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPARADVAIRICTSAGEALPREIGERFTAHFGC-EILDGIG  333 (529)
T ss_dssp             ECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTTCCCGGGCCCCEEEECSSCCCHHHHHHHHHHHSC-CEEEEEE
T ss_pred             EEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCcccccccCCceEEEEEcCCCCCHHHHHHHHHHhCC-ceeeeEc
Confidence            987 578999999999999999999999999999887654433234788876  899999999999999998 8999999


Q ss_pred             ccccCcccccC---CCCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCccccccc
Q psy8225         356 ATEGNANLMNA---DGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNG  432 (479)
Q Consensus       356 ~tE~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~g  432 (479)
                      +||++..+...   ....+++|+|++      +++++++|++ ++          +|++|+.|||+++    |+ +++.|
T Consensus       334 ~TE~~~~~~~~~~~~~~~~~~G~p~~------~~~~~i~d~~-g~----------~~~~g~~GEl~v~----g~-~~~~g  391 (529)
T 2v7b_A          334 STEMLHIFLSNRAGAVEYGTTGRPVP------GYEIELRDEA-GH----------AVPDGEVGDLYIK----GP-SAAVM  391 (529)
T ss_dssp             CTTTSSEEEECCTTCCCTTSCCEECT------TCEEEEECTT-SC----------BCCTTSCEEEEEE----CT-TCCCC
T ss_pred             hhhcCceeeccccCCCccCCcccCCC------CCEEEEECCC-CC----------CCCCCCccEEEEe----cC-Ccccc
Confidence            99996554322   234567777665      7999999954 55          6789999999998    88 89999


Q ss_pred             ccCcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         433 YADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       433 Y~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                      ||++++.+.+.|.      +|||+|||+|++|+||+|+|+||+||++
T Consensus       392 Y~~~~~~t~~~f~------~~~~~TGDl~~~~~~G~l~~~GR~dd~i  432 (529)
T 2v7b_A          392 YWNNREKSRATFL------GEWIRSGDKYCRLPNGCYVYAGRSDDML  432 (529)
T ss_dssp             BTTCHHHHHHHEE------TTEEEEEEEEEECTTSCEEEEEEGGGCB
T ss_pred             cCCChHHHHHhhh------cCCcccCceEEECCCccEEEeCccCCeE
Confidence            9999988887764      7899999999999999999999999985

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}

Probab=100.00  E-value=1.4e-60  Score=517.22  Aligned_cols=405  Identities=21%  Similarity=0.267  Sum_probs=336.7

Q ss_pred             cchhHHHHHHHhhcCCCccccEEE-----Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCce
Q psy8225          46 PTYARPLFVRTIREVPMTGAYKYT-----VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVV  119 (479)
Q Consensus        46 ~~~l~~~l~~~~~~~p~~~a~~~~-----~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~  119 (479)
                      +.++.++|.++++++|+++|+++.     +|| ||.++++++|+.|+++|+++||+|+|+++|++++++++|||+++|++
T Consensus        60 ~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~e~~v~~lA~~~~Ga~  139 (979)
T 3tsy_A           60 HLSLHDYIFQNISEFATKPCLINGPTGHVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGAT  139 (979)
T ss_dssp             TSCHHHHHTTTGGGTTTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCHHHHHHHHHHHHHTCE
T ss_pred             CCCHHHHHHHHHHhCCCCeEEEECCCCcEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCHHHHHHHHHHHHcCCE
Confidence            367999999999999999999984     999 99999999999999999999999999999999999999999999999


Q ss_pred             eeeecCCcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCCcceEEecCCCCCCCccCCCccccccccCCcCCCCCCc
Q psy8225         120 AAFINTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPT  199 (479)
Q Consensus       120 ~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (479)
                      ++|++|.++.+++.++++++++++||++....+.+..+.... ...++.++....  .........+.++..........
T Consensus       140 ~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  216 (979)
T 3tsy_A          140 ATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDD-GVVIVCIDDNES--VPIPEGCLRFTELTQSTTEASEV  216 (979)
T ss_dssp             EEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHTS-CCEEEECCCCTT--SCCCTTEEEGGGTSSCCSGGGGG
T ss_pred             EEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhcC-CceEEEeCCccc--ccCCcccccHHHHhhcccccccc
Confidence            999999999999999999999999999987665554443332 344454443211  11112334455544432221111


Q ss_pred             ccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhh----hcCCCCCCeEEEeccchhhhhhHHHHHHHHhcC
Q psy8225         200 EDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRY----QTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGG  275 (479)
Q Consensus       200 ~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~----~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G  275 (479)
                      .......++++++|+|||||||.||||+++|+++...+.....    .+.+..+|++++.+|++|.+++...++.++..|
T Consensus       217 ~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G  296 (979)
T 3tsy_A          217 IDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVG  296 (979)
T ss_dssp             SCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHT
T ss_pred             CCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHHHHHHHHHHHHHHhcC
Confidence            1113457889999999999999999999999999887765443    456788999999999999999877788899999


Q ss_pred             ceEEecCCCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEE--ecCCChhhHHHHHHHhCcceeeee
Q psy8225         276 STVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEF  353 (479)
Q Consensus       276 ~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~--G~~l~~~~~~~~~~~~~~~~v~~~  353 (479)
                      +++++.+.+++..+++.++++++|++.++|+++..|.+........+++||.++  |+++++++.+++.+.|+..++++.
T Consensus       297 ~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~l~~~  376 (979)
T 3tsy_A          297 AAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQG  376 (979)
T ss_dssp             CEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGGGGTSCCTTCCEEEESSCCCCSSHHHHHHHHCTTCEEEEC
T ss_pred             cEEEEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCccccCCCccceEEEEEcCCCCCHHHHHHHHHHCCCCeEEee
Confidence            999999999999999999999999999999999999988776666789999887  889999999999999944499999


Q ss_pred             ccccccCccccc--------CCCCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCC
Q psy8225         354 YGATEGNANLMN--------ADGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESR  425 (479)
Q Consensus       354 YG~tE~~~~~~~--------~~~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~  425 (479)
                      ||+||++.++..        .+...+++|+|++      +++++++|+++++          ++++|+.|||+++    |
T Consensus       377 YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~------~~~~~i~d~~~~~----------~~~~g~~GEl~i~----g  436 (979)
T 3tsy_A          377 YGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVR------NAEMKIVDPDTGD----------SLSRNQPGEICIR----G  436 (979)
T ss_dssp             EECGGGCSEEEECGGGSSSCCCCCTTCCCEECS------SCEEEEECTTSCC----------BCCTTCCEEEEEE----S
T ss_pred             echhhhhHHHHhCCCCCCCccccCCCCcCcccC------CcEEEEEeCCCCC----------CCCCCCccEEEEE----C
Confidence            999999865432        1234567777665      8999999988777          6789999999998    8


Q ss_pred             cccccccccCcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         426 AESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       426 ~~~~~~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                      + +++.|||++++.+.+.|.     .+|||+|||+|++|+||+|+|+||+||++
T Consensus       437 ~-~v~~GY~~~p~~t~~~f~-----~~g~~~TGDl~~~~~dG~l~~~GR~dd~i  484 (979)
T 3tsy_A          437 H-QIMKGYLNNPAATAETID-----KDGWLHTGDIGLIDDDDELFIVDRLKELI  484 (979)
T ss_dssp             T-TSCSEETTCHHHHHHHBC-----TTSCEEEEEEEEECTTSCEEEEEESCC--
T ss_pred             C-CccccccCChhhhhhhcc-----CCCcEEcCCEEEEcCCceEEEecCCCCEE
Confidence            8 999999999988887764     38999999999999999999999999986

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1

Probab=100.00  E-value=2.2e-60  Score=485.18  Aligned_cols=379  Identities=17%  Similarity=0.166  Sum_probs=307.0

Q ss_pred             chhHHHHHHHhhcCCCccccEEE---Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCceeee
Q psy8225          47 TYARPLFVRTIREVPMTGAYKYT---VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAF  122 (479)
Q Consensus        47 ~~l~~~l~~~~~~~p~~~a~~~~---~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~  122 (479)
                      .++.++|.++++++|+++|+++.   +|| ||.++++++|+.|+++|+++||+|+++++|++++++++|||+++|++++|
T Consensus        39 ~~l~~~l~~~a~~~p~~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vp  118 (563)
T 1amu_A           39 KTIHQLFEEQVSKRPNNVAIVCENEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYVP  118 (563)
T ss_dssp             CCHHHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEE
T ss_pred             CcHHHHHHHHHHHCCCCeEEEeCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEE
Confidence            57999999999999999999986   999 99999999999999999999999999999999999999999999999999


Q ss_pred             ecCCcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCCcceEEecCCCCCCCccCCCccccccccCCcCCCCCCcccc
Q psy8225         123 INTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTEDI  202 (479)
Q Consensus       123 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (479)
                      +++.++.+++.+++++++++++|++.+....+..+..   ...+.......            +.    .......   .
T Consensus       119 l~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~~~~---~~~~~~~~~~~------------~~----~~~~~~~---~  176 (563)
T 1amu_A          119 IDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQF---NGQVEIFEEDT------------IK----IREGTNL---H  176 (563)
T ss_dssp             CCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSCC---CSEEEECCCST------------TT----TSCCSCC---C
T ss_pred             eCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhhccc---cCceeeecchh------------hc----cccCccC---C
Confidence            9999999999999999999999999876544332211   11122211100            00    0000000   1


Q ss_pred             cCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcCCCCCCeEEEeccchhhhhhHHHHHHHHhcCceEEecC
Q psy8225         203 KKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRS  282 (479)
Q Consensus       203 ~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G~~~v~~~  282 (479)
                      ....++++++|+|||||||.||||+++|+++...+......+++..+|++++.+|++|..++ +.++.++..|+++++.+
T Consensus       177 ~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~v~~~  255 (563)
T 1amu_A          177 VPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASV-WEMFMALLTGASLYIIL  255 (563)
T ss_dssp             CCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHH-HHHHHHHTTTCEEEECC
T ss_pred             CCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHHHH-HHHHHHHHCCCEEEEcC
Confidence            23456889999999999999999999999999888877778889999999999999999886 56778999999999987


Q ss_pred             C---CChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEE--ecCCChhhHHHHHHHhCcceeeeecccc
Q psy8225         283 K---FSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFYGAT  357 (479)
Q Consensus       283 ~---~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~--G~~l~~~~~~~~~~~~~~~~v~~~YG~t  357 (479)
                      .   +++..+++.++++++|++.++|+++..|...      .++++|.++  |+++++++.++|.+.  . .+++.||+|
T Consensus       256 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~------~~~~lr~~~~gG~~l~~~~~~~~~~~--~-~~~~~YG~T  326 (563)
T 1amu_A          256 KDTINDFVKFEQYINQKEITVITLPPTYVVHLDPE------RILSIQTLITAGSATSPSLVNKWKEK--V-TYINAYGPT  326 (563)
T ss_dssp             HHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCTT------TCCSCSEEEEESSCCCHHHHHHHTTT--S-EEEEEECCG
T ss_pred             hHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHhc------ccccccEEEEEEecCCHHHHHHHHhC--C-eEEEEECcC
Confidence            5   6899999999999999999999998776432      357888776  889999999999874  4 899999999


Q ss_pred             ccCcccccCC------CCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCcccccc
Q psy8225         358 EGNANLMNAD------GKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFN  431 (479)
Q Consensus       358 E~~~~~~~~~------~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~  431 (479)
                      |++..++...      ....++|+|++      +++++++|++ ++          +++.|+.|||+++    |+ +++.
T Consensus       327 E~~~~~~~~~~~~~~~~~~~~vG~p~~------~~~v~i~d~~-~~----------~~~~g~~GEl~v~----g~-~v~~  384 (563)
T 1amu_A          327 ETTICATTWVATKETIGHSVPIGAPIQ------NTQIYIVDEN-LQ----------LKSVGEAGELCIG----GE-GLAR  384 (563)
T ss_dssp             GGSSCSEEEECCSSCCCSSCCCBEECT------TEEEEEECTT-SC----------BCCTTCEEEEEEE----ET-TCCC
T ss_pred             HHhHhheeeecccccCCCCCcccceeC------CCEEEEECCC-cC----------CCCCCCcEEEEEe----ch-hhCh
Confidence            9986654321      23345666554      8999999954 44          6789999999998    77 9999


Q ss_pred             cccCcchhHHHHHh-hhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         432 GYADKKASEKKILR-NVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       432 gY~~~~~~~~~~~~-~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                      |||++++.+.+.|. +++.+++|||+|||+|++|+||+|+|+||+||++
T Consensus       385 GY~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~dG~l~i~GR~~d~I  433 (563)
T 1amu_A          385 GYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQV  433 (563)
T ss_dssp             EETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEE
T ss_pred             hhCCCchhhhhhcccCCCCCCCEEEecCCEEEEcCCCeEEEeccccCEE
Confidence            99999888877663 3444567899999999999999999999999974

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A

Probab=100.00  E-value=2.2e-60  Score=478.09  Aligned_cols=391  Identities=17%  Similarity=0.165  Sum_probs=306.3

Q ss_pred             ccchhHHHHHHHhhcCCCccccEE-----------E-Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHH
Q psy8225          45 LPTYARPLFVRTIREVPMTGAYKY-----------T-VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWL  111 (479)
Q Consensus        45 ~~~~l~~~l~~~~~~~p~~~a~~~-----------~-~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~l  111 (479)
                      ...++.++|.++++++|+++|+++           . +|| ||.++++++|+.|+++|+ +||+|+++++|++++++++|
T Consensus        22 ~~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~~~~~l  100 (480)
T 3t5a_A           22 SVRSLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYVVAFL  100 (480)
T ss_dssp             --CCHHHHHHHHHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHHHHHHH
T ss_pred             CcccHHHHHHHHHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHHHHHHH
Confidence            457799999999999999999986           4 999 999999999999999996 99999999999999999999


Q ss_pred             HhhhcCceeeeecC---CcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCCc---ceEEecCCCCCCCccCCCcccc
Q psy8225         112 GLSKIGVVAAFINT---NQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPG---ISLYAAGTRRKPQAKVLPSTTL  185 (479)
Q Consensus       112 A~~~~G~~~v~l~~---~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~  185 (479)
                      ||+++|++++|+++   .++.+++.+++++++++++|++......+.+.....+.   ..++..+.              
T Consensus       101 A~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------  166 (480)
T 3t5a_A          101 GALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVDL--------------  166 (480)
T ss_dssp             HHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC------CCEEEEGGG--------------
T ss_pred             HHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhccccccccceeEecc--------------
Confidence            99999999999999   78899999999999999999998877766665443321   12222211              


Q ss_pred             ccccCCcCCCCCCcccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcCCCC------CCeEEEeccch
Q psy8225         186 LDEELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTS------DDVVYTTLPLY  259 (479)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~------~d~~~~~~pl~  259 (479)
                         ........   .......++++++|+|||||||.||||++||+++...+......+.+..      ++++++.+|++
T Consensus       167 ---~~~~~~~~---~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~  240 (480)
T 3t5a_A          167 ---LDLDAPNG---YTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLPFY  240 (480)
T ss_dssp             ---SCTTCC------CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHHCTTTTTCCCTTEEEEECCCTT
T ss_pred             ---cccccccC---CCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHhccccccCCCCCCeEEEeCCCc
Confidence               10000000   0113456789999999999999999999999999998888777777776      89999999999


Q ss_pred             hhhhhHHHHHHHHhcCceEEecCCC----ChhHHHHHHHHhcccEEEEehHHHHHHhcC----CCCCCCCCCceeEEE--
Q psy8225         260 HTAGGLLGIGQCLLGGSTVVIRSKF----SASNFWKDCIKYNCTVAQYIGEMCRYLLAV----PEKPEDTQHSVKMMI--  329 (479)
Q Consensus       260 h~~g~~~~~~~~l~~G~~~v~~~~~----~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~----~~~~~~~l~~lr~~~--  329 (479)
                      |.+|++..++.++..|+++++.+.+    ++..+++.++++++| +..+|+++..++..    .......+++||.++  
T Consensus       241 h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~~~~~~~~l~~lr~i~~g  319 (480)
T 3t5a_A          241 HDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTDDDMAGRDLGNILTILSG  319 (480)
T ss_dssp             STTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCTGGGTTCCCTTCCEEEEC
T ss_pred             CccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCcccccccchhhhheeeec
Confidence            9999878888999999999998753    899999999999999 78889888877653    233345688999877  


Q ss_pred             ecCCChhhHHHHHHHhCc-----ceeeeeccccccCcccccCCCC-C---------------------CcccccCccccC
Q psy8225         330 GNGLRPQVWEPFQKRFGL-----DRICEFYGATEGNANLMNADGK-V---------------------GAVGYIPYIAIP  382 (479)
Q Consensus       330 G~~l~~~~~~~~~~~~~~-----~~v~~~YG~tE~~~~~~~~~~~-~---------------------~~~g~~~~~~~~  382 (479)
                      |+++++++.++|.+.++.     ..+++.||+||++..++..... +                     +....+.+++.+
T Consensus       320 G~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p  399 (480)
T 3t5a_A          320 SERVQAATIKRFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLP  399 (480)
T ss_dssp             CTTCCHHHHHHHHHHSGGGTCCGGGEEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECC
T ss_pred             CCcCCHHHHHHHHHHHhhcCCChhhccccccccccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcc
Confidence            889999999999999842     3799999999998766532211 0                     001122234445


Q ss_pred             CCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCcccccccccCcchhHHHHHhhh------ccCCCcEEE
Q psy8225         383 FYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNGYADKKASEKKILRNV------YSHGDAAFN  456 (479)
Q Consensus       383 ~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~gY~~~~~~~~~~~~~~------~~~~~g~~~  456 (479)
                      .+ ++++|+|+++++          +|+.|+.|||+++    || +++.|||++++.+++.|...      ..+++|||+
T Consensus       400 ~~-~~~~ivd~~~g~----------~~~~g~~GEl~v~----g~-~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~  463 (480)
T 3t5a_A          400 RS-PIVRIVDSDTCI----------ECPDGTVGEIWVH----GD-NVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLR  463 (480)
T ss_dssp             SS-SEEEEEETTTTE----------ECCTTBCEEEEEE----ST-TSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEE
T ss_pred             cC-CEEEEEcCCCCc----------CCCCCCEEEEEEe----CC-ccccccccCcchhHHHHhhhhccccCCCCCCCeee
Confidence            55 889999987766          6799999999999    88 99999999999888877410      112478999


Q ss_pred             cCCeeEEecCCcEEEecC
Q psy8225         457 TGDILIKDKFQYFYFKDR  474 (479)
Q Consensus       457 TGD~g~~d~dG~l~~~GR  474 (479)
                      |||+|++| ||+|+|+||
T Consensus       464 TGDlg~~d-dG~l~~~GR  480 (480)
T 3t5a_A          464 TGDSGFVT-DGKMFIIGR  480 (480)
T ss_dssp             EEEEEEEE-TTEEEECC-
T ss_pred             ccceeeEE-CCEEEEeCC
Confidence            99999997 999999999

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*

Probab=100.00  E-value=1.2e-60  Score=483.29  Aligned_cols=384  Identities=18%  Similarity=0.222  Sum_probs=315.6

Q ss_pred             hhHHHHHHHhhcCCCccccEEE---Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCceeeee
Q psy8225          48 YARPLFVRTIREVPMTGAYKYT---VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFI  123 (479)
Q Consensus        48 ~l~~~l~~~~~~~p~~~a~~~~---~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~l  123 (479)
                      ++.++|+++++++|+++|+++.   +|| ||.++++++|.+|+++|+++||+|+++++|++++++++|||+++|++++|+
T Consensus         2 ~l~~~l~~~a~~~p~~~A~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~~~~G~v~vpl   81 (512)
T 3fce_A            2 KLLEQIEKWAAETPDQTAFVWRDAKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGCVKAGHAYIPV   81 (512)
T ss_dssp             CHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHHHHTTCCEEEE
T ss_pred             cHHHHHHHHHHHCCCceEEEeCCceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEee
Confidence            5889999999999999999987   999 999999999999999999999999999999999999999999999999999


Q ss_pred             cCCcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCCcceEEecCCCCCCCccCCCccccccccCCcCCCCCCccccc
Q psy8225         124 NTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTEDIK  203 (479)
Q Consensus       124 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (479)
                      ++.++.+++.++++.++++++|++.....      ... ...++...              .+............. ...
T Consensus        82 ~~~~~~~~l~~il~~~~~~~~i~~~~~~~------~~~-~~~~~~~~--------------~~~~~~~~~~~~~~~-~~~  139 (512)
T 3fce_A           82 DLSIPADRVQRIAENSGAKLLLSATAVTV------TDL-PVRIVSED--------------NLKDIFFTHKGNTPN-PEH  139 (512)
T ss_dssp             ETTSCHHHHHHHHHHSCCCEEEESSCCCS------SCC-SSEEEETH--------------HHHHHHHHTTTCCCC-GGG
T ss_pred             CCCCcHHHHHHHHHhcCCCEEEecCcccc------ccc-ccceechh--------------hhhhhcccccccCCC-ccc
Confidence            99999999999999999999999753210      000 11111100              011111101111111 113


Q ss_pred             CCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcCCCCCCeEEEeccchhhhhhHHHHHHHHhcCceEEecCC
Q psy8225         204 KNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSK  283 (479)
Q Consensus       204 ~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~  283 (479)
                      ...++++++|+|||||||.||||+++|+++...+......+++..+|++++.+|++|..++ ..++.++..|+++++.+.
T Consensus       140 ~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~~~~~~  218 (512)
T 3fce_A          140 AVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSV-MDIYPSLVTGGTLWAIDK  218 (512)
T ss_dssp             SCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHTTCCSSCEEEECSCTTSGGGH-HHHHHHHHTTCEEEECCH
T ss_pred             cCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHhHHH-HHHHHHHhCCCEEEECCH
Confidence            4567899999999999999999999999999998888888899999999999999999986 567889999999999886


Q ss_pred             ---CChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEE--ecCCChhhHHHHHHHhCcceeeeeccccc
Q psy8225         284 ---FSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFYGATE  358 (479)
Q Consensus       284 ---~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~--G~~l~~~~~~~~~~~~~~~~v~~~YG~tE  358 (479)
                         +++..+++.++++++|++.++|+++..++.........++++|.++  |+++++++.+++.+.|+..++++.||+||
T Consensus       219 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE  298 (512)
T 3fce_A          219 DMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTE  298 (512)
T ss_dssp             HHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTTCSTTTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGG
T ss_pred             HHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhccccchhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCcccCh
Confidence               6899999999999999999999999999888776666788999877  89999999999999995449999999999


Q ss_pred             cCcccccCC--------CCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCccccc
Q psy8225         359 GNANLMNAD--------GKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHF  430 (479)
Q Consensus       359 ~~~~~~~~~--------~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~~  430 (479)
                      +++.++...        ....++|+|.+      +++++++|++ |+          ++++|+.|||+++    || +++
T Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~------~~~~~i~d~~-g~----------~~~~g~~GEl~v~----g~-~v~  356 (512)
T 3fce_A          299 ATVAVTGIHVTEEVLDQYKSLPVGYCKS------DCRLLIMKED-GT----------IAPDGEKGEIVIV----GP-SVS  356 (512)
T ss_dssp             GSSCSEEEECCHHHHHHCSSCCCEEECT------TCEEEEECSS-SC----------BCCTTSCEEEEEE----ST-TSC
T ss_pred             hhhheeeEEeccccccccCCCccccccC------CcEEEEECCC-CC----------CCCCCCeEEEEEe----cc-ccC
Confidence            987654321        24456676655      7999999844 55          6789999999998    88 999


Q ss_pred             ccccCcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         431 NGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       431 ~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                      .|||++++.+++.|.  ..+++|||+|||+|++ +||+|+|+||+||++
T Consensus       357 ~GY~~~~~~t~~~f~--~~~~~~~~~TGDlg~~-~dG~l~i~GR~~d~i  402 (512)
T 3fce_A          357 VGYLGSPELTEKAFT--MIDGERAYKTGDAGYV-ENGLLFYNGRLDFQI  402 (512)
T ss_dssp             SCBTTCHHHHHHHEE--EETTEEEEEEEEEEEE-ETTEEEEEEEGGGCE
T ss_pred             hhhcCCchhhhhccc--cCCCCEEEeCCceEEe-cCCEEEEecccCCEE
Confidence            999999988887663  1245789999999999 899999999999985

>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A

Probab=100.00  E-value=8.1e-60  Score=482.68  Aligned_cols=380  Identities=18%  Similarity=0.221  Sum_probs=305.9

Q ss_pred             chhHHHHHHHhhcCCCccccEEE---Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCceeee
Q psy8225          47 TYARPLFVRTIREVPMTGAYKYT---VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAF  122 (479)
Q Consensus        47 ~~l~~~l~~~~~~~p~~~a~~~~---~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~  122 (479)
                      .++.++|+++++++|+++|+++.   +|| ||.++++++|++|+++|+++||+|+++++|++++++++|||+++|++++|
T Consensus        75 ~~l~~~l~~~a~~~pd~~A~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vp  154 (570)
T 4gr5_A           75 ACVHELFEAQAARAPDAVALLHEADELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLKAGGGYTM  154 (570)
T ss_dssp             CCHHHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCHHHHHHHHHHHCCCCeEEECCCCcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHHCCEEEE
Confidence            57999999999999999999987   999 99999999999999999999999999999999999999999999999999


Q ss_pred             ecCCcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCCcceEEecCCCCCCCccCCCccccccccCCcCCCCCCcccc
Q psy8225         123 INTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTEDI  202 (479)
Q Consensus       123 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (479)
                      ++|.++.+++.+++++++++++|++.....       .......+...+..                .......   ...
T Consensus       155 l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~-------~~~~~~~~~~~~~~----------------~~~~~~~---~~~  208 (570)
T 4gr5_A          155 LDPQFPVERLALSLEDTGAPLLVTSRPLSG-------RLTGTTTLYVEDEA----------------ASDAPAG---NLA  208 (570)
T ss_dssp             CCTTSCHHHHHHHHHHHTCSEEEECTTTTT-------SSCSSEEEECCC-----------------------CC---CCC
T ss_pred             cCCCChHHHHHHHHHhcCCCEEEecchhhh-------cccCCcceeeeccc----------------ccccccc---ccC
Confidence            999999999999999999999999875432       11222211111100                0000000   001


Q ss_pred             cCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcCCCCCCeEEEeccchhhhhhHHHHHHHHhcCceEEecC
Q psy8225         203 KKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRS  282 (479)
Q Consensus       203 ~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G~~~v~~~  282 (479)
                      ....++++++|+|||||||.||||+++|+++...... ...+++..+|++++.+|++|..+. ..++.++..|+++++.+
T Consensus       209 ~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~v~~~  286 (570)
T 4gr5_A          209 TGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG-QDYAGFGPDEVFLQCSPVSWDAFG-LELFGALLFGARCVLQS  286 (570)
T ss_dssp             CCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS-CCSSCCSTTCEEEECSCTTSSTHH-HHHHHHHTTTCEEEECS
T ss_pred             CCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh-hhhcCCCCCCEEEEecCccHHHHH-HHHHHHHhcCCEEEEcC
Confidence            3456789999999999999999999999999766554 345678899999999999987654 56778999999999876


Q ss_pred             --CCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEE--ecCCChhhHHHHHHHhCcceeeeeccccc
Q psy8225         283 --KFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFYGATE  358 (479)
Q Consensus       283 --~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~--G~~l~~~~~~~~~~~~~~~~v~~~YG~tE  358 (479)
                        .+++..+++.|+++++|++.++|++++.|.+...   ..+++||.++  |+++++++.+++.+.++..++++.||+||
T Consensus       287 ~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~---~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~TE  363 (570)
T 4gr5_A          287 GQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVP---EAFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAE  363 (570)
T ss_dssp             SSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCG---GGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGG
T ss_pred             CccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhch---hhCCCceEEEEecccCCHHHHHHHHHhCCCcEEEEeechhh
Confidence              4689999999999999999999999999987543   2578899877  88999999999999885449999999999


Q ss_pred             cCcccccC-------CCCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCcccccc
Q psy8225         359 GNANLMNA-------DGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFN  431 (479)
Q Consensus       359 ~~~~~~~~-------~~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~  431 (479)
                      +++.++..       .....++|+|++      +++++|+|++ ++          +++.|+.|||+++    || +++.
T Consensus       364 ~~~~~~~~~~~~~~~~~~~~~iG~p~~------~~~v~i~d~~-~~----------~~~~G~~GEl~v~----g~-~v~~  421 (570)
T 4gr5_A          364 SMGFTTHHAVVAGDLSGTALPIGVPLA------GKRAYVLDDD-LK----------PAANGALGELYVA----GA-GLAH  421 (570)
T ss_dssp             GCSCSEEEECCGGGTTSSSCCCBEECT------TEEEEEECTT-SC----------BCCTTCEEEEEEE----ET-TCCC
T ss_pred             heeeeeeeeecccccCCCccccceeeC------CCEEEEECCC-CC----------CCCCCCcEEEEEe----ec-ccch
Confidence            98665421       123344566554      8999999954 44          6789999999999    77 9999


Q ss_pred             cccCcchhHHHHHh-hhcc--CCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         432 GYADKKASEKKILR-NVYS--HGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       432 gY~~~~~~~~~~~~-~~~~--~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                      |||++++.+.+.|. +.|.  +++|||+|||+|++|+||+|+|+||+||++
T Consensus       422 GY~~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg~~d~dG~l~~~GR~~d~I  472 (570)
T 4gr5_A          422 GYVSRPALTAERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGRADDQV  472 (570)
T ss_dssp             EETTCHHHHHHHEEECTTCCSSCCEEEEEEEEEEECTTSCEEEEEC-----
T ss_pred             hcCCCchhhhcccccCCCCCCCCCEEEeCCCeEEECCCCeEEEEcccCCEE
Confidence            99999888877663 2221  245899999999999999999999999985

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}

Probab=100.00  E-value=2.1e-59  Score=483.72  Aligned_cols=397  Identities=16%  Similarity=0.196  Sum_probs=323.6

Q ss_pred             hcccchhHHHHHHHhhcCCCccccEEE---Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCc
Q psy8225          43 KTLPTYARPLFVRTIREVPMTGAYKYT---VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGV  118 (479)
Q Consensus        43 ~~~~~~l~~~l~~~~~~~p~~~a~~~~---~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~  118 (479)
                      .+...++.++|.++++  |+++|+++.   +|| ||.++++++|+.|+++|+++||+|+++++|++++++++|||+++|+
T Consensus        23 ~~~~~~l~~~~~~~a~--pd~~Av~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~lA~l~aG~  100 (617)
T 3rg2_A           23 YWQDLPLTDILTRHAA--SDSIAVIDGERQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGV  100 (617)
T ss_dssp             SCCCCCTTHHHHTTTT--CCSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTC
T ss_pred             CCCcCCHHHHHHHhhC--CCCeEEecCCceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHhcCe
Confidence            3445779999999988  999999987   999 9999999999999999999999999999999999999999999999


Q ss_pred             eeeeecCCcchHHHHHHHHhccceEEEeChhhH-----HHHHHhhccCCcceEEecCCCCCCCccCCCccccccccCCcC
Q psy8225         119 VAAFINTNQRQHILIHSIKVAECKAIIYGAELS-----EALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEV  193 (479)
Q Consensus       119 ~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (479)
                      +++|+++..+.+++.++++++++++++++....     ..........+.+..+.......        ...+.+.....
T Consensus       101 ~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~  172 (617)
T 3rg2_A          101 APVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSG--------EHNLQDAINHP  172 (617)
T ss_dssp             EEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTTCCEEEEETCCS--------TTBHHHHHHSC
T ss_pred             EEccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCccceeeeccccc--------ccchhhhhccc
Confidence            999999999999999999999999999987543     23333333334333332221110        11111211111


Q ss_pred             CCCCCcccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcCCCCCCeEEEeccchhhhhhHH-HHHHHH
Q psy8225         194 SAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLL-GIGQCL  272 (479)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~-~~~~~l  272 (479)
                      .....   .....++++++|+|||||||.||||+++|+++...+......+++..++++++.+|++|.+++.. .++.++
T Consensus       173 ~~~~~---~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~l  249 (617)
T 3rg2_A          173 AEDFT---ATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNYAMSSPGSLGVF  249 (617)
T ss_dssp             CSSCC---CCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHH
T ss_pred             ccccC---CCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhcCCCCcceEEEeccchhhhhhhHHHHHHHH
Confidence            11111   13346789999999999999999999999999999988888889999999999999999988754 578899


Q ss_pred             hcCceEEecCCCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCC--CCCCCceeEEE--ecCCChhhHHHHHHHhCcc
Q psy8225         273 LGGSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKP--EDTQHSVKMMI--GNGLRPQVWEPFQKRFGLD  348 (479)
Q Consensus       273 ~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~--~~~l~~lr~~~--G~~l~~~~~~~~~~~~~~~  348 (479)
                      ..|+++++.+.+++..+++.++++++|++.++|+++..|.+.....  ...+++||.++  |+++++++.+++.+.++. 
T Consensus       250 ~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~-  328 (617)
T 3rg2_A          250 LAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARLSATLAARIPAEIGC-  328 (617)
T ss_dssp             HHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESSCCCHHHHHHHHHHTCS-
T ss_pred             HcCCEEEEeCCCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccccCCCccEEEEcCCcCCHHHHHHHHHHhCC-
Confidence            9999999999899999999999999999999999999887653222  23578899876  899999999999999998 


Q ss_pred             eeeeeccccccCcccccCCCC----CCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecC
Q psy8225         349 RICEFYGATEGNANLMNADGK----VGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKES  424 (479)
Q Consensus       349 ~v~~~YG~tE~~~~~~~~~~~----~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~  424 (479)
                      ++++.||+||++..+......    ..++|+|+.     ++.++.++|++ ++          +|+.|+.|||+++    
T Consensus       329 ~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~-----~~~~~~i~d~~-~~----------~~p~G~~GEl~i~----  388 (617)
T 3rg2_A          329 QLQQVFGMAEGLVNYTRLDDSAEKIIHTQGYPMC-----PDDEVWVADAE-GN----------PLPQGEVGRLMTR----  388 (617)
T ss_dssp             EEEEEEEETTEEEEECCTTSCHHHHHHCCCEESC-----TTCEEEEECTT-SC----------BCCTTCCEEEEEE----
T ss_pred             cEEEEeccCcceeecccCCCcccccccCCCccCC-----CCceEEEECCC-CC----------CCCCCCceEEEec----
Confidence            999999999988655443321    234566542     25788888854 44          6799999999998    


Q ss_pred             CcccccccccCcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         425 RAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       425 ~~~~~~~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                      |+ +++.||+|+++.+.+.|.     .++||+|||+|++|+||+|+|+||+||+|
T Consensus       389 G~-~v~~GY~~~p~~t~~~f~-----~~~~yrTGDl~~~~~dG~l~~~GR~dd~i  437 (617)
T 3rg2_A          389 GP-YTFRGYYKSPQHNASAFD-----ANGFYCSGDLISIDPEGYITVQGREKDQI  437 (617)
T ss_dssp             CS-SSCSCCTTCHHHHHHHBC-----TTSCEEEEEEEEECTTSCEEEEEECSSEE
T ss_pred             Cc-cccchhcCChhhhhhccC-----CCCceecCceEEEcCCceEEEEeecCCEE
Confidence            88 999999999998887764     37999999999999999999999999985

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*

Probab=100.00  E-value=7.7e-60  Score=478.51  Aligned_cols=384  Identities=17%  Similarity=0.176  Sum_probs=314.1

Q ss_pred             chhHHHHHHHhhcCCCccccEEE---Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCceeee
Q psy8225          47 TYARPLFVRTIREVPMTGAYKYT---VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAF  122 (479)
Q Consensus        47 ~~l~~~l~~~~~~~p~~~a~~~~---~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~  122 (479)
                      .++.++|+++++++|+++|+.+.   +|| ||.++++++|++|++.|+++||+|+++++|++++++++|||+++|++++|
T Consensus         4 ~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~vp   83 (521)
T 3l8c_A            4 KDMIDSIEQFAQTQADFPVYDCLGERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVALTKSGHAYIP   83 (521)
T ss_dssp             CCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHHHHHTTCCEEE
T ss_pred             HHHHHHHHHHHHHCCCCcceecCCCeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEe
Confidence            56889999999999999999987   999 99999999999999999999999999999999999999999999999999


Q ss_pred             ecCCcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCCcceEEecCCCCCCCccCCCccccccccCCcCCCCCCcccc
Q psy8225         123 INTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTEDI  202 (479)
Q Consensus       123 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (479)
                      +++.++.+++.++++.++++++|++.+....       .....++...              .+..........   ...
T Consensus        84 l~~~~~~~~l~~il~~~~~~~ii~~~~~~~~-------~~~~~~~~~~--------------~~~~~~~~~~~~---~~~  139 (521)
T 3l8c_A           84 VDVHSAPERILAIIEIAKPSLIIAIEEFPLT-------IEGISLVSLS--------------EIESAKLAEMPY---ERT  139 (521)
T ss_dssp             EETTSCHHHHHHHHHHSCCSEEEESSCCCSC-------CTTSEEEEHH--------------HHHHHHHHTCCC---CCS
T ss_pred             cCccccHHHHHHHHHhCCCCEEEecCccccc-------cccCcccchh--------------hhhhcccccCCc---ccC
Confidence            9999999999999999999999998653211       1111111110              000000000000   011


Q ss_pred             cCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhh--cCCCCCCeEEEeccchhhhhhHHHHHHHHhcCceEEe
Q psy8225         203 KKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQ--TGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVI  280 (479)
Q Consensus       203 ~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~--~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G~~~v~  280 (479)
                      ....++++++|+|||||||.||||+++|+++...+......  +++..++++++..|++|..++ ..++.++..|+++++
T Consensus       140 ~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~l~~G~~~~~  218 (521)
T 3l8c_A          140 HSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSV-MYWAPTLALGGTLFA  218 (521)
T ss_dssp             SCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTTTCCCSSCEEECCSCTTSGGGH-HHHHHHHHTTCEEEE
T ss_pred             CCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhccccCCCCCCeEEecCCccHHHHH-HHHHHHHhcCCEEEE
Confidence            34567899999999999999999999999999877766554  677889999999999998875 557778999999998


Q ss_pred             cCCC---ChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEE--ecCCChhhHHHHHHHhCcceeeeecc
Q psy8225         281 RSKF---SASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFYG  355 (479)
Q Consensus       281 ~~~~---~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~--G~~l~~~~~~~~~~~~~~~~v~~~YG  355 (479)
                      .+.+   ++..+++.+.++++|++.++|+++..+..........++++|.++  |+++++++.+++.+.++..++++.||
T Consensus       219 ~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~YG  298 (521)
T 3l8c_A          219 LPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDFCQAKMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYG  298 (521)
T ss_dssp             CCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEEC
T ss_pred             cCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhccccccCccceEEEEecccCCHHHHHHHHHHCCCceEEeCcC
Confidence            8754   889999999999999999999999999887766666788999877  89999999999999994449999999


Q ss_pred             ccccCcccccC--------CCCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCcc
Q psy8225         356 ATEGNANLMNA--------DGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAE  427 (479)
Q Consensus       356 ~tE~~~~~~~~--------~~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~  427 (479)
                      +||+++.++..        .....++|+|++      +++++++|++ |.          +++.|+.|||+++    || 
T Consensus       299 ~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~~------~~~~~i~d~~-g~----------~~~~g~~GEl~v~----g~-  356 (521)
T 3l8c_A          299 PTEATVALSAIEITREMVDNYTRLPIGYPKP------DSPTYIIDED-GK----------ELSSGEQGEIIVT----GP-  356 (521)
T ss_dssp             CGGGSSCSEEEEECHHHHHHCSSCEEEEECT------TSCEEEECTT-SC----------BCCTTCCEEEEEE----ST-
T ss_pred             ccHHhhhhceeecccccccCCCccccccccC------CCEEEEECCC-cC----------CCCCCCceEEEec----cc-
Confidence            99998765431        124456777665      7999999954 54          6789999999998    88 


Q ss_pred             cccccccCcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         428 SHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       428 ~~~~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                      +++.|||++++.+.+.|..  .+++|||+|||+|++|+||+|+|.||+||++
T Consensus       357 ~v~~GY~~~~~~t~~~f~~--~~~~~~~~TGDlg~~d~dG~l~~~GR~~d~i  406 (521)
T 3l8c_A          357 AVSKGYLNNPEKTAEAFFT--FKGQPAYHTGDIGSLTEDNILLYGGRLDFQI  406 (521)
T ss_dssp             TSCSCBTTCHHHHHHHEEE--ETTEEEEEEEEEEEECSSSCEEEEEEGGGBC
T ss_pred             ccChhhcCCchHhhccCcC--CCCceeeeCCCEEEEeCCCeEEEeCcccceE
Confidence            9999999999888876521  1357899999999999999999999999986

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*

Probab=100.00  E-value=1e-59  Score=485.08  Aligned_cols=391  Identities=19%  Similarity=0.208  Sum_probs=315.7

Q ss_pred             ccchhHHHHHHHhhcCCCccccEE------E-Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhc
Q psy8225          45 LPTYARPLFVRTIREVPMTGAYKY------T-VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKI  116 (479)
Q Consensus        45 ~~~~l~~~l~~~~~~~p~~~a~~~------~-~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~  116 (479)
                      .+.++.++|+++++.+|+++|+++      . +|| ||.++++++|..|+++|+++||+|+++++|++++++++|||+++
T Consensus         9 ~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~   88 (590)
T 3kxw_A            9 QCQSLVDVVRLRALHSPNKKSCTFLNKELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYA   88 (590)
T ss_dssp             TCSSHHHHHHHHHHHCTTSEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHT
T ss_pred             CcccHHHHHHHHHHhCCCCeEEEEEcCCeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHHh
Confidence            446799999999999999999986      2 999 99999999999999999999999999999999999999999999


Q ss_pred             CceeeeecCCc---chHHHHHHHHhccceEEEeChhhHHHHHHhh-ccCCc---ceEEecCCCCCCCccCCCcccccccc
Q psy8225         117 GVVAAFINTNQ---RQHILIHSIKVAECKAIIYGAELSEALTEVK-DSIPG---ISLYAAGTRRKPQAKVLPSTTLLDEE  189 (479)
Q Consensus       117 G~~~v~l~~~~---~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (479)
                      |++++|++|..   +.+++.++++.+++++++++.+....+.... ...+.   +.++.                 .+.+
T Consensus        89 G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~  151 (590)
T 3kxw_A           89 GCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFLKIPAIA-----------------LESI  151 (590)
T ss_dssp             TCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCEETTEEEEE-----------------GGGC
T ss_pred             CcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhcccccccceee-----------------chhc
Confidence            99999999987   5678999999999999999987655443321 11111   11111                 1111


Q ss_pred             CCcCCCCCCcccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcCCCCCCeEEEeccchhhhhhHHHHH
Q psy8225         190 LPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIG  269 (479)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~  269 (479)
                      ........   ......++++++|+|||||||.||||+++|+++...+......+++..+|++++.+|++|.+|+...++
T Consensus       152 ~~~~~~~~---~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~  228 (590)
T 3kxw_A          152 ELNRSSSW---QPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFSWLPPHHDMGLIGCIL  228 (590)
T ss_dssp             CGGGGGGC---CCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHTTTH
T ss_pred             cccccccC---CCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhhCCCCcCeEEEecCCCcchhhHHHHH
Confidence            10000000   013456789999999999999999999999999999998888899999999999999999999876688


Q ss_pred             HHHhcCceEEecCCC----ChhHHHHHHHHhcccEEEEehHHHHHHhcCC---CCCCCCCCceeEEE--ecCCChhhHHH
Q psy8225         270 QCLLGGSTVVIRSKF----SASNFWKDCIKYNCTVAQYIGEMCRYLLAVP---EKPEDTQHSVKMMI--GNGLRPQVWEP  340 (479)
Q Consensus       270 ~~l~~G~~~v~~~~~----~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~---~~~~~~l~~lr~~~--G~~l~~~~~~~  340 (479)
                      .++..|+++++.+.+    ++..+++.++++++|++.++|+++..+.+..   ......+++||.++  |+++++++.++
T Consensus       229 ~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~  308 (590)
T 3kxw_A          229 TPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEPVREETMEH  308 (590)
T ss_dssp             HHHHHTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGTTCCCTTCCEEEECSSCCCHHHHHH
T ss_pred             HHHhcCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhccCCCchhhHHHhhCCCCCCHHHHHH
Confidence            899999999998865    7999999999999999999999998887653   23345678999877  89999999999


Q ss_pred             HHHHhCc-----ceeeeeccccccCcccccCC------------------------------CCCCcccccCccccCCCc
Q psy8225         341 FQKRFGL-----DRICEFYGATEGNANLMNAD------------------------------GKVGAVGYIPYIAIPFYP  385 (479)
Q Consensus       341 ~~~~~~~-----~~v~~~YG~tE~~~~~~~~~------------------------------~~~~~~g~~~~~~~~~~~  385 (479)
                      |.+.++.     .++++.||+||++..++...                              ....++|+|++      +
T Consensus       309 ~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~------~  382 (590)
T 3kxw_A          309 FYQAFKEFGFRKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQ------E  382 (590)
T ss_dssp             HHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESS------E
T ss_pred             HHHHHHHcCCCccccccccccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCC------C
Confidence            9999842     27999999999987654211                              11234455443      5


Q ss_pred             eeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCcccccccccCcchhHHHHHhhhccC---CCcEEEcCCeeE
Q psy8225         386 VGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNGYADKKASEKKILRNVYSH---GDAAFNTGDILI  462 (479)
Q Consensus       386 ~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~gY~~~~~~~~~~~~~~~~~---~~g~~~TGD~g~  462 (479)
                        ++++|+++++          +|+.|+.|||+++    || +++.|||++++.+++.|.+.+.+   +++||+|||+|+
T Consensus       383 --v~i~d~~~~~----------~~~~g~~GEl~v~----g~-~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~  445 (590)
T 3kxw_A          383 --VKIIDPDTLI----------PCDFDQVGEIWVQ----SN-SVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGF  445 (590)
T ss_dssp             --EEEECTTTCC----------BCCTTBCEEEEEE----ST-TSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEE
T ss_pred             --eEEEcCCCCc----------CCCCCCEEEEEEe----CC-cccccccCChhHHHHHHhccccCCCCCCcEEecCcEEE
Confidence              7778887666          6799999999999    88 99999999999888877532221   233999999999


Q ss_pred             EecCCcEEEecCCCCCC
Q psy8225         463 KDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       463 ~d~dG~l~~~GR~~d~~  479 (479)
                      +| ||+|+|+||+||++
T Consensus       446 ~d-dG~l~~~GR~dd~I  461 (590)
T 3kxw_A          446 LH-ENELYVTGRIKDLI  461 (590)
T ss_dssp             EE-TTEEEEEEESSCHH
T ss_pred             EE-CCEEEEEcCccceE
Confidence            99 99999999999974

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*

Probab=100.00  E-value=2.1e-59  Score=482.02  Aligned_cols=381  Identities=16%  Similarity=0.175  Sum_probs=309.8

Q ss_pred             ccchhHHHHHHHhhcCCCccccEEE---Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCcee
Q psy8225          45 LPTYARPLFVRTIREVPMTGAYKYT---VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVA  120 (479)
Q Consensus        45 ~~~~l~~~l~~~~~~~p~~~a~~~~---~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~  120 (479)
                      ...++.++|.++++++|+++|+++.   +|| ||.++++++|+.|+++|+++||+|+++++|++++++++|||+++|+++
T Consensus        25 ~~~tl~~~~~~~a~~~Pd~~Av~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~lailkaGa~~  104 (620)
T 4dg8_A           25 AHPTVVARFSEMAALHPHREAIRDRFGSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLLAILLSGHHY  104 (620)
T ss_dssp             GSCCHHHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHHHHHHHTTCEE
T ss_pred             CCCCHHHHHHHHHHhCCCCeEEEcCCCcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEE
Confidence            3467999999999999999999987   999 999999999999999999999999999999999999999999999999


Q ss_pred             eeecCCcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCCcceEEecCCCCCCCccCCCccccccccCCcCCCCCCcc
Q psy8225         121 AFINTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTE  200 (479)
Q Consensus       121 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (479)
                      +|++|.++.+++.++++++++++++++......       ........                 +......    ....
T Consensus       105 vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~-------~~~~~~~~-----------------~~~~~~~----~~~~  156 (620)
T 4dg8_A          105 LYIDLKQPAAWNAELCRQVDCRLILDCSTTPTP-------ANGLPCVP-----------------VRHLPAA----PASV  156 (620)
T ss_dssp             EECCTTSCHHHHHHHHHHHTEEEEEECCSSCCC-------CTTSCEEE-----------------GGGCCCC----CCCS
T ss_pred             EeeCccChHHHHHHHHHhCCCcEEEecCccccc-------ccCCceee-----------------eccCCcC----Cccc
Confidence            999999999999999999999999976432110       00111110                 0000000    0000


Q ss_pred             cccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcCCCCCCeEEEeccchhhhhhHHHHHHHHhcCceEEe
Q psy8225         201 DIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVI  280 (479)
Q Consensus       201 ~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G~~~v~  280 (479)
                      ......++++++|+|||||||.||||+++|+++.+.+.. ...+++.+++++++.+|++|..++ ..++.++..|+++++
T Consensus       157 ~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~v~  234 (620)
T 4dg8_A          157 ARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFLAFAPQMRFLVNSPLSFDAAT-LEIWGALLNGGCCVL  234 (620)
T ss_dssp             SCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGGTTCTTCEEEECSCTTSTHHH-HHHHHHHTTTCEEEE
T ss_pred             cCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhhCCCCCCEEEEECccCHHHHH-HHHHHHHhcCCEEEe
Confidence            113346789999999999999999999999999876655 456778899999999999999986 568889999999998


Q ss_pred             cC--CCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEE--ecCCChhhHHHHHHHhCcceeeeeccc
Q psy8225         281 RS--KFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFYGA  356 (479)
Q Consensus       281 ~~--~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~--G~~l~~~~~~~~~~~~~~~~v~~~YG~  356 (479)
                      .+  .+++..+++.++++++|++.++|++++.|.+..   ...+++||.++  |+++++++.+++.+.++..++++.||+
T Consensus       235 ~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~---~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~  311 (620)
T 4dg8_A          235 NDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLD---PDCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGP  311 (620)
T ss_dssp             CCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHC---GGGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECC
T ss_pred             CccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcC---hhhCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeEch
Confidence            64  579999999999999999999999999988643   23578899876  889999999998888744499999999


Q ss_pred             cccCcccccC-------CCCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCcccc
Q psy8225         357 TEGNANLMNA-------DGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESH  429 (479)
Q Consensus       357 tE~~~~~~~~-------~~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~  429 (479)
                      ||++..++..       .....++|+|++      +++++++|++...          .++.|+.|||+++    |+ ++
T Consensus       312 TE~~~~~~~~~~~~~~~~~~~~~iG~p~~------~~~~~i~d~~~~~----------~~~~g~~GEl~i~----G~-~v  370 (620)
T 4dg8_A          312 TENTTFTCCHVVTDDDLEEDDIPIGKAIA------GTAVLLLDEHGQE----------IAEPDRAGEIVAF----GA-GL  370 (620)
T ss_dssp             GGGCSCSEEEECCTGGGGSSSCCCBEECT------TEEEEEECTTSCB----------CCSSSCCEEEEEE----ET-TC
T ss_pred             hhhhhheEEEeccccccCCCCCCceeccc------CcEEEEECccCCC----------CCCCCCceEEEEe----cc-cc
Confidence            9998665421       123345666554      8999999976433          3688999999998    77 99


Q ss_pred             cccccCcchhHHHHHhhhccCCC--cEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         430 FNGYADKKASEKKILRNVYSHGD--AAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       430 ~~gY~~~~~~~~~~~~~~~~~~~--g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                      +.||+|+++.+.+.|...-.++.  +||+|||+|++|+||+|+|+||+||+|
T Consensus       371 ~~GY~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~l~~~GR~dd~I  422 (620)
T 4dg8_A          371 AQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARYDEQGRLRFIGRGDGQV  422 (620)
T ss_dssp             CSEETTCHHHHHHHEEEEEETTEEEEEEEEEEEEEECTTSCEEEEECSSSEE
T ss_pred             ccccCCChhhhhhhhccCCCCCCCceEEeCCCEEEECCCCeEEEEccCCCEE
Confidence            99999999888877643111222  799999999999999999999999985

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*

Probab=100.00  E-value=3.6e-59  Score=472.08  Aligned_cols=381  Identities=18%  Similarity=0.229  Sum_probs=316.9

Q ss_pred             hhHHHHHHHhhcCCCccccEEE---Eeh-hhHHHHHHHHHHHHHc-CCCCCCEEEEEcCCchHHHHHHHHhhhcCceeee
Q psy8225          48 YARPLFVRTIREVPMTGAYKYT---VTF-QVEDHSNRIANFFKSK-GLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAF  122 (479)
Q Consensus        48 ~l~~~l~~~~~~~p~~~a~~~~---~Ty-~l~~~~~~la~~L~~~-gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~  122 (479)
                      ++.++|+++++++|+++|+++.   +|| ||.++++++|..|.+. |.++|++|+++++|++++++++|||+++|++++|
T Consensus         2 ~l~~~l~~~a~~~p~~~Al~~~~~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~vp   81 (511)
T 3e7w_A            2 KLLHAIQTHAETYPQTDAFRSQGQSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVKAGHPYIP   81 (511)
T ss_dssp             CHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHHHHHHTCCEEE
T ss_pred             cHHHHHHHHHHHCCCCeEEEcCCceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHHHHHhCCEEEe
Confidence            5789999999999999999987   999 9999999999999886 8889999999999999999999999999999999


Q ss_pred             ecCCcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCC-cceEEecCCCCCCCccCCCccccccccCCcCCCCCCccc
Q psy8225         123 INTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIP-GISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTED  201 (479)
Q Consensus       123 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (479)
                      +++.++.+++.+++++++++++|++.....      .... .+.                 ...++++..........  
T Consensus        82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~------~~~~~~~~-----------------~~~~~~~~~~~~~~~~~--  136 (511)
T 3e7w_A           82 VDLSIPSERIAKIIESSGAELLIHAAGLSI------DAVGQQIQ-----------------TVSAEELLENEGGSVSQ--  136 (511)
T ss_dssp             EETTSCHHHHHHHHHHHTCCEEEESSSCCT------TCCCCSSC-----------------EEEHHHHHTSCSCCCCG--
T ss_pred             cCCCChHHHHHHHHHhCCCCEEEecccccc------hhcccccc-----------------eecHhhhhccccCCccc--
Confidence            999999999999999999999999654211      0000 011                 11122222211111111  


Q ss_pred             ccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcCCCCCCeEEEeccchhhhhhHHHHHHHHhcCceEEec
Q psy8225         202 IKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIR  281 (479)
Q Consensus       202 ~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G~~~v~~  281 (479)
                      .....++++++|+|||||||.||||+++|+++...+......+++..++++++.+|++|..++ ..++.++..|+++++.
T Consensus       137 ~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~~~~  215 (511)
T 3e7w_A          137 DQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFPVSGGKIFLNQAPFSFDLSV-MDLYPCLQSGGTLHCV  215 (511)
T ss_dssp             GGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHSTTTTTCEEEECSCTTSTHHH-HHHHHHHHTTCEEEEC
T ss_pred             cccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCccceEEEeCCccHHHHH-HHHHHHHhcCCEEEEc
Confidence            134567899999999999999999999999999998888888899999999999999999986 5678899999999998


Q ss_pred             CC---CChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEE--ecCCChhhHHHHHHHhCcceeeeeccc
Q psy8225         282 SK---FSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFYGA  356 (479)
Q Consensus       282 ~~---~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~--G~~l~~~~~~~~~~~~~~~~v~~~YG~  356 (479)
                      +.   +++..+++.++++++|++.++|++++.++.........++++|.++  |+++++++.+++.+.|+..++++.||+
T Consensus       216 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~  295 (511)
T 3e7w_A          216 TKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGP  295 (511)
T ss_dssp             CHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCC
T ss_pred             ChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhccccccccCCcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCccc
Confidence            75   6899999999999999999999999999988776666788999876  899999999999999944499999999


Q ss_pred             cccCcccccC--------CCCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCccc
Q psy8225         357 TEGNANLMNA--------DGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAES  428 (479)
Q Consensus       357 tE~~~~~~~~--------~~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~  428 (479)
                      ||+++.++..        .....++|+|.+      +++++++|++ |+          ++++|+.|||+++    || +
T Consensus       296 TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~------~~~~~i~d~~-g~----------~~~~g~~GEl~v~----g~-~  353 (511)
T 3e7w_A          296 TEATVAVTSVEITNDVISRSESLPVGFAKP------DMNIFIMDEE-GQ----------PLPEGEKGEIVIA----GP-S  353 (511)
T ss_dssp             GGGSSCSEEEEECHHHHTTCSSCCCBEECT------TCEEEEECTT-SC----------BCCTTCCEEEEEE----ST-T
T ss_pred             chheeeeeEEeccccccccCCcCCCcceeC------CCEEEEECCC-CC----------CCCCCCceEEEEe----cC-c
Confidence            9998765421        233455676655      8999999965 55          6799999999998    88 9


Q ss_pred             ccccccCcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         429 HFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       429 ~~~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                      ++.|||++++.+++.|..  .++++||+|||+|++ +||+|+|+||+||++
T Consensus       354 v~~GY~~~~~~t~~~f~~--~~g~~~~~TGDlg~~-~dG~l~~~GR~~d~i  401 (511)
T 3e7w_A          354 VSRGYLGEPELTEKAFFS--HEGQWAYRTGDAGFI-QDGQIFCQGRLDFQI  401 (511)
T ss_dssp             SCCCBTTCHHHHHHHEEE--SSSSEEEEEEEEEEE-ETTEEEEEEESSSEE
T ss_pred             cChhhCCCcccchhhhcC--CCCCEEEeCCCeEEc-cCCeEEEEccccCEE
Confidence            999999999888776521  123448999999999 599999999999985

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=100.00  E-value=1.8e-58  Score=466.26  Aligned_cols=387  Identities=19%  Similarity=0.212  Sum_probs=303.1

Q ss_pred             hhHHHHHHHhhcCCCccccEEE---Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCceeeee
Q psy8225          48 YARPLFVRTIREVPMTGAYKYT---VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFI  123 (479)
Q Consensus        48 ~l~~~l~~~~~~~p~~~a~~~~---~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~l  123 (479)
                      +|.++|.++++++|+++|+++.   +|| ||.++++++|..|+++   +||+|+++++|++++++++|||+++|++++|+
T Consensus         2 tl~~~l~~~a~~~pd~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpl   78 (501)
T 3ipl_A            2 SLDFWLYKQAQQNGHHIAITDGQESYTYQNLYCEASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHACWLANIEIAMI   78 (501)
T ss_dssp             -CCCHHHHHHHHHTTSEEEECSSCEEEHHHHHHHHHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHHHHTTCEEEEC
T ss_pred             CHHHHHHHHHHhcCCceEEEeCCcEEEHHHHHHHHHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEec
Confidence            5778999999999999999987   999 9999999999999986   89999999999999999999999999999999


Q ss_pred             cCCcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCCcceEEecCCCCCCCccCCCccccccccCCcCCCCCC--ccc
Q psy8225         124 NTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSP--TED  201 (479)
Q Consensus       124 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  201 (479)
                      ++.++.+++.+++++++++++|++............ ...+............... .....+............  ...
T Consensus        79 ~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  156 (501)
T 3ipl_A           79 NTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVS-LDDIEFAGRDITTNGLLDN-TMGIQYDTSNETVVPKESPSNIL  156 (501)
T ss_dssp             CTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEE-TTC---------------------------------CCHHHHT
T ss_pred             CccCCHHHHHHHHHhcCCCEEEEccccccccccccc-cccceeeeeeccccccccc-ccccccccchhhccccCCccccc
Confidence            999999999999999999999998754332211110 0111100000000000000 000000000000000000  001


Q ss_pred             ccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcCCCCCCeEEEeccchhhhhhHHHHHHHHhcCceEEec
Q psy8225         202 IKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIR  281 (479)
Q Consensus       202 ~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G~~~v~~  281 (479)
                      .....++++++|+|||||||.||||+++|+++...+......+++.++|++++.+|++|.+|+.. ++.++..|+++++.
T Consensus       157 ~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~-~~~~l~~G~~~~~~  235 (501)
T 3ipl_A          157 NTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLSV-LLRAVIEGFTVRIV  235 (501)
T ss_dssp             CCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHTCCCTTCEEEECSCTTSHHHHHH-HHHHHHHTCEEEEC
T ss_pred             ccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhhCCCccCEEEEeCcHHHHHHHHH-HHHHHHcCceEEeC
Confidence            13456789999999999999999999999999999888888889999999999999999999754 77899999999999


Q ss_pred             CCCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEE--ecCCChhhHHHHHHHhCcceeeeecccccc
Q psy8225         282 SKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFYGATEG  359 (479)
Q Consensus       282 ~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~--G~~l~~~~~~~~~~~~~~~~v~~~YG~tE~  359 (479)
                      +.+++..+++.++++++|++.++|++++.|.+......   .+||.++  |+++++++.+++.+ ++. ++++.||+||+
T Consensus       236 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~---~~lr~i~~gG~~l~~~~~~~~~~-~~~-~~~~~YG~TE~  310 (501)
T 3ipl_A          236 DKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEP---YNLQKILLGGAKLSATMIETALQ-YNL-PIYNSFGMTET  310 (501)
T ss_dssp             SSCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSC---TTCCEEEECSSCCCHHHHHHHHH-TTC-CEEEEEEEGGG
T ss_pred             CCCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCc---CcccEEEEeCCCCCHHHHHHHHH-hCC-CEecccccccc
Confidence            99999999999999999999999999999988754432   2788776  89999999999987 687 89999999999


Q ss_pred             CcccccC-----CCCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCccccccccc
Q psy8225         360 NANLMNA-----DGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNGYA  434 (479)
Q Consensus       360 ~~~~~~~-----~~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~gY~  434 (479)
                      ++.+...     ...++++|+|++      +++++++|++                .|+.|||+++    |+ +++.||+
T Consensus       311 ~~~~~~~~~~~~~~~~~~~G~p~~------~~~~~i~d~~----------------~~~~GEl~v~----g~-~~~~gY~  363 (501)
T 3ipl_A          311 CSQFLTATPEMLHARPDTVGMPSA------NVDVKIKNPN----------------KEGHGELMIK----GA-NVMNGYL  363 (501)
T ss_dssp             TEEEEEECHHHHHHCTTCCBEECT------TCEEEEESCC----------------SSCCEEEEEE----ST-TSCSCCS
T ss_pred             ccceeecCccccccCCCCCCCCCC------CcEEEEecCC----------------CCCccEEEEe----cc-chhhhhC
Confidence            8654322     235677888766      7999999865                2457999998    88 9999999


Q ss_pred             CcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         435 DKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       435 ~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                      ++++.+.. +.      +|||+|||+|++|+||+++|+||.||++
T Consensus       364 ~~~~~t~~-~~------~g~~~TGDl~~~~~~G~l~~~GR~dd~i  401 (501)
T 3ipl_A          364 YPTDLTGT-FE------NGYFNTGDIAEIDHEGYVMIYDRRKDLI  401 (501)
T ss_dssp             BSTTCCCS-EE------TTEEEEEEEEEECTTSCEEEEEECCCCE
T ss_pred             cChhhcch-hc------CCceecCCEEEEcCCCeEEEEccccceE
Confidence            98877654 32      7899999999999999999999999985

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}

Probab=100.00  E-value=2.6e-57  Score=463.96  Aligned_cols=384  Identities=15%  Similarity=0.131  Sum_probs=300.2

Q ss_pred             ccchhHHHHHHHhhcCCCccccEE------------E-Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHH
Q psy8225          45 LPTYARPLFVRTIREVPMTGAYKY------------T-VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMW  110 (479)
Q Consensus        45 ~~~~l~~~l~~~~~~~p~~~a~~~------------~-~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~  110 (479)
                      .+.++.++|+++++++|+++|+++            . +|| ||.++++++|+.|.+.|+ +||+|+++++|++++++++
T Consensus        18 ~~~tl~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~~~~~   96 (562)
T 3ite_A           18 STVPPSHYIETWAKTHPEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIAFAII   96 (562)
T ss_dssp             CCCCTTHHHHHHHHHCTTSEEEEEEECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHHHHHH
T ss_pred             ccCCHHHHHHHHHHHCCCchhhhcccccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHHHHHH
Confidence            446789999999999999999985            3 999 999999999999999999 7999999999999999999


Q ss_pred             HHhhhcCceeeeecCCcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCCcceEEecCCCCCCCccCCCccccccccC
Q psy8225         111 LGLSKIGVVAAFINTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEEL  190 (479)
Q Consensus       111 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (479)
                      |||+++|++++|+++.++.+++.+++++++++++|++.......    .......++....            ..+.+.+
T Consensus        97 lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~----~~~~~~~~~~~~~------------~~~~~~~  160 (562)
T 3ite_A           97 VGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGV----ELPPETKVLDTKN------------QSFIENL  160 (562)
T ss_dssp             HHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTC----CCCTTCEEEETTC------------HHHHHHH
T ss_pred             HHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEcccccccc----ccCccceeecccc------------hhhhhhc
Confidence            99999999999999999999999999999999999986543211    0001111111110            0111111


Q ss_pred             CcCCCCCCcccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhh--------hcCCCCCCeEEEeccchhhh
Q psy8225         191 PEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRY--------QTGLTSDDVVYTTLPLYHTA  262 (479)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~--------~~~~~~~d~~~~~~pl~h~~  262 (479)
                      ........   .....++++++|+|||||||.||||+++|+++...+.....        .+.+...+++++..|++|..
T Consensus       161 ~~~~~~~~---~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (562)
T 3ite_A          161 STQDTSDI---LNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDV  237 (562)
T ss_dssp             HHSCCSCC---CCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTH
T ss_pred             cccccccc---ccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhh
Confidence            11111111   12345678899999999999999999999999877665433        24477889999999999987


Q ss_pred             hhHHHHHHHHhcCceEEecCCCC-hhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEE--ecCCChhhHH
Q psy8225         263 GGLLGIGQCLLGGSTVVIRSKFS-ASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWE  339 (479)
Q Consensus       263 g~~~~~~~~l~~G~~~v~~~~~~-~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~--G~~l~~~~~~  339 (479)
                      ++ ..++.++..|+++++.+.+. +..+++.++++++|++.++|++++.+....    ..+++||.++  |+++++++.+
T Consensus       238 ~~-~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~~----~~~~~lr~~~~gG~~l~~~~~~  312 (562)
T 3ite_A          238 HI-GEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLVP----EDAPHLVYLGVGGEKMTPRTQQ  312 (562)
T ss_dssp             HH-HHHHHHHHTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCCG----GGSTTCCEEEEESSCCCHHHHH
T ss_pred             hH-HHHHHHHhcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccCc----cccCceEEEEEecCCCCHHHHH
Confidence            75 55677889999999877543 577889999999999999999988875432    3578899876  8999999999


Q ss_pred             HHHHHhCcceeeeeccccccCccccc----CCCCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCc
Q psy8225         340 PFQKRFGLDRICEFYGATEGNANLMN----ADGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPG  415 (479)
Q Consensus       340 ~~~~~~~~~~v~~~YG~tE~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~G  415 (479)
                      +|.+.++. .+++.||+||++..++.    .....+++|+|++      +++++++|+++++          ++++|+.|
T Consensus       313 ~~~~~~~~-~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~------~~~~~i~d~~~~~----------~~~~g~~G  375 (562)
T 3ite_A          313 IWSSSDRV-ALVNVYGPTEVTIGCSAGRILPDSDTRCIGHPLG------DSVAHVLAPGSNE----------HVKKGMAG  375 (562)
T ss_dssp             HHTTCSSC-EEEEEECCGGGCSCSEEEECCTTSCTTEEEEECT------TCEEEEECTTSSC----------BCCTTSCE
T ss_pred             HHhhCCCc-EEEEeeccchheeeeeeeeecCCCCCccccccCC------CCeEEEEeCCCCC----------CCCCCCce
Confidence            99988888 99999999999865542    2344567777665      7999999987776          67999999


Q ss_pred             eEEEEeecCCcccccccccCcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         416 ILIGMIKESRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       416 el~v~~~~~~~~~~~~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                      ||+++    |+ +++.|||++++.+...    +.++++||+|||+|++|+||+|+|+||+||++
T Consensus       376 El~v~----g~-~v~~GY~~~p~~t~~~----~~~g~~w~~TGDlg~~d~dG~l~~~GR~dd~I  430 (562)
T 3ite_A          376 ELVIE----GS-LVANGYLNRPDAKGFC----DINGRKMYRTGDIVRMDADSSILFLGRKDEQV  430 (562)
T ss_dssp             EEEEE----ST-TSCCEESSCTTCCSEE----EETTEEEEEEEEEEEECTTSCEEEEEEC----
T ss_pred             EEEEe----cc-ccchhhCCCccccccc----cCCCCEEEecCCEEEEcCCCeEEEEccccCEE
Confidence            99998    88 9999999998766532    23445699999999999999999999999985

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*

Probab=100.00  E-value=1.5e-57  Score=458.90  Aligned_cols=375  Identities=20%  Similarity=0.231  Sum_probs=301.1

Q ss_pred             cchhHHHHHHHhhcCCC-ccccEEE---Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCcee
Q psy8225          46 PTYARPLFVRTIREVPM-TGAYKYT---VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVA  120 (479)
Q Consensus        46 ~~~l~~~l~~~~~~~p~-~~a~~~~---~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~  120 (479)
                      ..++.++|.++++++|+ ++|+++.   +|| ||.++++++|..|.     .|++|+++++|++++++++|||+++|+++
T Consensus        21 ~~tl~~~l~~~a~~~p~d~~Al~~~~~~~Ty~eL~~~~~~~A~~L~-----~~~~V~i~~~~~~~~~~~~la~~~~Ga~~   95 (505)
T 3nyq_A           21 MSSLFPALSPAPTGAPADRPALRFGERSLTYAELAAAAGATAGRIG-----GAGRVAVWATPAMETGVAVVAALLAGVAA   95 (505)
T ss_dssp             ---CCTTTSSCCCSGGGGSEEEEETTEEEEHHHHHHHHHHHHTTCC--------CEEEECCSSHHHHHHHHHHHHHTCCE
T ss_pred             cchhHHHHHHHHHhCCCCCeEEEECCeeeeHHHHHHHHHHHHhhcc-----CCCEEEEEcCCCHHHHHHHHHHHHhCCEE
Confidence            35688899999999998 9999987   999 99999999998874     37899999999999999999999999999


Q ss_pred             eeecCCcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCCcceEEecCCCCCCCccCCCccccccccCCcCCCCCCcc
Q psy8225         121 AFINTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTE  200 (479)
Q Consensus       121 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (479)
                      +|++|.++.+++.+++++++++++|++.+..     .......+..+......                    . .... 
T Consensus        96 vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~~~~--------------------~-~~~~-  148 (505)
T 3nyq_A           96 VPLNPKSGDKELAHILSDSAPSLVLAPPDAE-----LPPALGALERVDVDVRA--------------------R-GAVP-  148 (505)
T ss_dssp             EEECTTCCHHHHHHHHHHHCCSEEEECTTCC-----CCGGGTTSEEEECCTTC--------------------C-CCCC-
T ss_pred             EEcCCCCCHHHHHHHHHHCCCCEEEECCccc-----cchhhcccccccccccc--------------------c-cCCC-
Confidence            9999999999999999999999999986421     00111112211111000                    0 0000 


Q ss_pred             cccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcCCCCCCeEEEeccchhhhhhHHHHHHHHhcCceEEe
Q psy8225         201 DIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVI  280 (479)
Q Consensus       201 ~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G~~~v~  280 (479)
                       .....++++++|+|||||||.||||+++|+++...+......+++..+|++++.+|++|..|+...++.++..|+++++
T Consensus       149 -~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~  227 (505)
T 3nyq_A          149 -EDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRH  227 (505)
T ss_dssp             -CCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEE
T ss_pred             -CCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHhCCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEE
Confidence             1344678999999999999999999999999999998888888999999999999999999987788899999999999


Q ss_pred             cCCCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCC---CCCCCceeEEE--ecCCChhhHHHHHHHhCcceeeeecc
Q psy8225         281 RSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKP---EDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFYG  355 (479)
Q Consensus       281 ~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~---~~~l~~lr~~~--G~~l~~~~~~~~~~~~~~~~v~~~YG  355 (479)
                      .+.+++..+++.+ ++++|++.++|+++..|.+.....   ...++++|.++  |+++++++.+++.+.++. ++++.||
T Consensus       228 ~~~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~-~~~~~YG  305 (505)
T 3nyq_A          228 LGRFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADPELAKALAGARLLVSGSAALPVHDHERIAAATGR-RVIERYG  305 (505)
T ss_dssp             CSSCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCHHHHHHHHHCSEEEECSSCCCHHHHHHHHHHHSC-CCEEEEE
T ss_pred             CCCCChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCchhhcccccceEEEECCCCCCHHHHHHHHHhcCC-eeecccc
Confidence            9999999999999 889999999999999988743221   12367788876  888999999999999998 9999999


Q ss_pred             ccccCcccccC---CCCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCccccccc
Q psy8225         356 ATEGNANLMNA---DGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNG  432 (479)
Q Consensus       356 ~tE~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~g  432 (479)
                      +||++..+...   ....+++|+|++      +++++++|++ ++.+       .+++.|+.|||+++    |+ +++.|
T Consensus       306 ~TE~~~~~~~~~~~~~~~~~vG~p~~------~~~~~i~d~~-g~~~-------~~~~~g~~GEl~v~----g~-~v~~G  366 (505)
T 3nyq_A          306 MTETLMNTSVRADGEPRAGTVGVPLP------GVELRLVEED-GTPI-------AALDGESVGEIQVR----GP-NLFTE  366 (505)
T ss_dssp             ETTTEEEEECCTTSCCCTTCCCEECT------TCEEEEC------CC-------CCCCSCCCEEEEEE----ST-TSCCE
T ss_pred             hhhcccccccCCCCCCCCCCcccCCC------CCEEEEECCC-CCCc-------ccCCCCceEEEEEe----cC-chhhh
Confidence            99998665432   234566777665      8999999865 4422       01234899999998    88 99999


Q ss_pred             ccCcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCC-CCCC
Q psy8225         433 YADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRT-GDAC  479 (479)
Q Consensus       433 Y~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~-~d~~  479 (479)
                      ||++++.+.+.|.     .+|||+|||+|++|+||+|+|+||+ ||++
T Consensus       367 Y~~~~~~t~~~f~-----~~g~y~TGDl~~~~~dG~l~~~GR~~d~~i  409 (505)
T 3nyq_A          367 YLNRPDATAAAFT-----EDGFFRTGDMAVRDPDGYVRIVGRKATDLI  409 (505)
T ss_dssp             ETTCHHHHHHTBC-----TTSCEEEEEEEEECTTSCEEEEEESSCCCE
T ss_pred             hCCChhHhhhhhc-----CCCCCccCCeEEECCCccEEEeCCccCceE
Confidence            9999988887664     3799999999999999999999998 5764

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}

Probab=100.00  E-value=1.7e-55  Score=488.91  Aligned_cols=383  Identities=17%  Similarity=0.233  Sum_probs=313.1

Q ss_pred             chhHHHHHHHhhcCCCccccEEE---Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCceeee
Q psy8225          47 TYARPLFVRTIREVPMTGAYKYT---VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAF  122 (479)
Q Consensus        47 ~~l~~~l~~~~~~~p~~~a~~~~---~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~  122 (479)
                      .++.++|.++++++|+++|+++.   +|| ||.++++++|+.|+++|+++|++|+|+++|++++++++|||+++|++++|
T Consensus       464 ~~l~~~~~~~~~~~p~~~Av~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~lailkaG~~~vp  543 (1304)
T 2vsq_A          464 KPLTYWFKEAVNANPDAPALTYSGQTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAGAAYLP  543 (1304)
T ss_dssp             CCHHHHHHHHHHHCTTSEEEESSSCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCHHHHHHHHHHhCCCCeEEEECCeeEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHHHHHHHHHHHHCCEEEE
Confidence            57999999999999999999987   999 99999999999999999999999999999999999999999999999999


Q ss_pred             ecCCcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCC-cceEEecCCCCCCCccCCCccccccccCCcCCCCCCccc
Q psy8225         123 INTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIP-GISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTED  201 (479)
Q Consensus       123 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (479)
                      ++|.++.+++.+++++++++++|++.+....+.    ..+ ....+..++..           .+.    ..... .   
T Consensus       544 ldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~----~~~~~~~~~~~~~~~-----------~~~----~~~~~-~---  600 (1304)
T 2vsq_A          544 VDPKLPEDRISYMLADSAAACLLTHQEMKEQAA----ELPYTGTTLFIDDQT-----------RFE----EQASD-P---  600 (1304)
T ss_dssp             CCTTSCHHHHHHHHHHHTCCEEEECSTTCTTST----TCCCCSEEEESSCGG-----------GGG----SCSSC-C---
T ss_pred             ECCCCHHHHHHHHHHHcCCCEEEECcchhhhhh----ccCCCCcEEEecccc-----------ccc----cccCC-C---
Confidence            999999999999999999999999876432211    111 11122221100           000    00000 0   


Q ss_pred             ccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcCCCCCCeEEEeccchhhhhhHHHHHHHHhcCceEEec
Q psy8225         202 IKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIR  281 (479)
Q Consensus       202 ~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G~~~v~~  281 (479)
                      .....++++++|+|||||||+||||+++|+++.+. ......+++..+|++++..|++|..+. +.++.++..|+++++.
T Consensus       601 ~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~~~~~~d~~l~~~~~~fd~~~-~~~~~~l~~G~~l~~~  678 (1304)
T 2vsq_A          601 ATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYMAFSDQDTFLSVSNYAFDAFT-FDFYASMLNAARLIIA  678 (1304)
T ss_dssp             CCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSSCCCTTCEEEECSCTTSTHHH-HHHHHHHTTTCEEEEC
T ss_pred             CCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhcCCCCCCEEEEECCccHHHHH-HHHHHHHHcCCEEEEC
Confidence            13346789999999999999999999999999866 444556778899999999999998774 6788899999999998


Q ss_pred             CC---CChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEE--ecCCChhhHHHHHHHhCcceeeeeccc
Q psy8225         282 SK---FSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFYGA  356 (479)
Q Consensus       282 ~~---~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~--G~~l~~~~~~~~~~~~~~~~v~~~YG~  356 (479)
                      +.   .++..+++.|.++++|++.++|++++.|.+...   ..+++||.++  |+++++++.++|.+.++..++++.||+
T Consensus       679 ~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~---~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~  755 (1304)
T 2vsq_A          679 DEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAGE---DWMKGLRCILFGGERASVPHVRKALRIMGPGKLINCYGP  755 (1304)
T ss_dssp             CGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCS---HHHHTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECC
T ss_pred             ChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhch---hcCCCccEEEEecCCCCHHHHHHHHHhCCCCEEEEeECh
Confidence            74   689999999999999999999999999876421   2367888876  889999999999999875589999999


Q ss_pred             cccCcccccCC-------CCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCcccc
Q psy8225         357 TEGNANLMNAD-------GKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESH  429 (479)
Q Consensus       357 tE~~~~~~~~~-------~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~  429 (479)
                      ||++..++...       ....++|+|      +++++++|+|++ ++          +|+.|+.|||+++    |+ ++
T Consensus       756 TE~~~~~~~~~~~~~~~~~~~~~iG~p------~~~~~~~i~d~~-~~----------~~p~G~~GEl~i~----G~-~v  813 (1304)
T 2vsq_A          756 TEGTVFATAHVVHDLPDSISSLPIGKP------ISNASVYILNEQ-SQ----------LQPFGAVGELCIS----GM-GV  813 (1304)
T ss_dssp             GGGSSCSEEEECCCCCSSCSSCCCBEE------CTTEEEEEECTT-SC----------BCCTTCCEEEEEE----ET-TC
T ss_pred             hHHhHHheeeeccCccccCCCCCCcee------eCCCEEEEECCC-cC----------CCCCCCceEEEEe----cc-cc
Confidence            99987654321       122344554      448999999965 44          6799999999998    77 99


Q ss_pred             cccccCcchhHHHHH-hhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         430 FNGYADKKASEKKIL-RNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       430 ~~gY~~~~~~~~~~~-~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                      +.||+|+++.|++.| .++|.++++||+|||+|++++||+|+|+||+||+|
T Consensus       814 ~~GY~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~d~qv  864 (1304)
T 2vsq_A          814 SKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQV  864 (1304)
T ss_dssp             CCCBTTCHHHHHHHEEECTTSTTCEEEEEEEEEEECTTSCEEEEEEGGGEE
T ss_pred             CccccCCcccchhhhccCCCCCCCeeEecCCeEEEcCCCeEEEEcCCCCEE
Confidence            999999988777655 45566678899999999999999999999999985

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*

Probab=100.00  E-value=3.8e-35  Score=290.47  Aligned_cols=234  Identities=18%  Similarity=0.111  Sum_probs=189.0

Q ss_pred             CCC-CCcEEEEEccCCCCCcceEEeehHHHHHHhhhhh---hhcCCCCCCeEEEeccchhhhhhHHHHHHHHhcCceEEe
Q psy8225         205 NKP-SDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGR---YQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVI  280 (479)
Q Consensus       205 ~~~-~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~---~~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G~~~v~  280 (479)
                      ... +++++++|||||||.||+|+++|+++...+....   ..+++.++|++++.+|++|..+.+..++.++..|+++++
T Consensus        82 ~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~  161 (436)
T 3qov_A           82 GDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVP  161 (436)
T ss_dssp             SCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEEC
T ss_pred             CCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEe
Confidence            344 7889999999999999999999999977665543   345789999999999998877776777888999999999


Q ss_pred             cCCCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCC--CCCceeEEE--ecCCChhhHHHHHHHhCcceeeeeccc
Q psy8225         281 RSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPED--TQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFYGA  356 (479)
Q Consensus       281 ~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~--~l~~lr~~~--G~~l~~~~~~~~~~~~~~~~v~~~YG~  356 (479)
                      .+.+++..+++.|+++++|++.++|+++..|++.......  .++++|.++  |+++++++.+++++.||. ++++.||+
T Consensus       162 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~-~v~~~YG~  240 (436)
T 3qov_A          162 AAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPHTDEQRRKIERMLNV-KAYNSFGM  240 (436)
T ss_dssp             CCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSCCCHHHHHHHHHHHTS-EEEEEEEE
T ss_pred             CCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCcCCHHHHHHHHHHhCc-cEEecCcc
Confidence            9888999999999999999999999999998876433332  367899876  899999999999999998 99999999


Q ss_pred             cccCcc-c-ccCCCCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCccccccccc
Q psy8225         357 TEGNAN-L-MNADGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNGYA  434 (479)
Q Consensus       357 tE~~~~-~-~~~~~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~gY~  434 (479)
                      ||+++. + ...+... ..+.+      .+++.++++|+++++          ++++|+.|||+++    |. .      
T Consensus       241 TE~~~~~~~~~~~~~~-g~~~~------~~~~~v~i~d~~~g~----------~~~~g~~Gel~v~----~~-~------  292 (436)
T 3qov_A          241 TEMNGPGVAFECQEQN-GMHFW------EDCYLVEIIDPETGE----------PVPEGEIGELVLT----TL-D------  292 (436)
T ss_dssp             GGGTEEEEEEECTTCS-SEEEC------TTTEEEEEECTTTCS----------BCSTTCCEEEEEE----ES-S------
T ss_pred             hhhcCCeeEEecCCCC-eeEEc------cCceEEEEEECCCCC----------CCCCCCceEEEEe----cc-C------
Confidence            999543 3 2232221 13332      236889999988777          6789999999998    32 1      


Q ss_pred             CcchhHHHHHhhhccCCCcEEEcCCeeEEecCC------c---EEEecCCCCCC
Q psy8225         435 DKKASEKKILRNVYSHGDAAFNTGDILIKDKFQ------Y---FYFKDRTGDAC  479 (479)
Q Consensus       435 ~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG------~---l~~~GR~~d~~  479 (479)
                      + .     .    +  .++||+|||+|++|++|      +   ++|.||.||++
T Consensus       293 ~-~-----~----~--~~~~y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~i  334 (436)
T 3qov_A          293 R-E-----M----M--PLIRYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMF  334 (436)
T ss_dssp             C-C-----S----S--CCCSEEEEEEECEECSCCTTCCCSCEECCCCCBSSSCE
T ss_pred             c-C-----C----c--eEEEEEcCCEEEEcCCCCCCCCCccccCcccCccCCEE
Confidence            0 0     0    1  26899999999999998      6   79999999985

>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}

Probab=100.00  E-value=3.5e-35  Score=281.89  Aligned_cols=213  Identities=13%  Similarity=0.103  Sum_probs=170.6

Q ss_pred             CCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcCCCCCCeEEEeccchhhhhhHHHHHHHHhcCceEEecCCCCh
Q psy8225         207 PSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSA  286 (479)
Q Consensus       207 ~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~  286 (479)
                      .+++++|+|||||||.||||++||+++.+.+......++++++|++++.+|++|.+|+. .++.++..|+++++.++.  
T Consensus        36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~-~~~~~l~~g~~~~~~~~~--  112 (358)
T 4gs5_A           36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKALSLGPGTRALVCLNVGYIAGLM-MLVRGMELDWELTVTEPT--  112 (358)
T ss_dssp             HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHH-HHHHHHHHTCEEEEECCC--
T ss_pred             CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEECChHHHHHHH-HHHHHHHhCcEEEecCcc--
Confidence            47899999999999999999999999999999888899999999999999999999974 466788888888876532  


Q ss_pred             hHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEE--ecCCChhhHHHHHHHhCcceeeeeccccccCcccc
Q psy8225         287 SNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFYGATEGNANLM  364 (479)
Q Consensus       287 ~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~--G~~l~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~  364 (479)
                      ...++.++++++|++.++|++++.|++..... ..+++||.++  |+++++++.+++++ ++. ++++.||+||+++.+.
T Consensus       113 ~~~~~~i~~~~~t~~~~~P~~l~~ll~~~~~~-~~l~~lr~v~~gG~~l~~~~~~~~~~-~~~-~~~~~YG~TEt~~~~~  189 (358)
T 4gs5_A          113 ANPLAGLDHADFDFVAMVPMQLQSILENSATS-GQVDRLGKVLLGGAPVNHALAMQISD-LAM-PVYQSYGMTETVSHVA  189 (358)
T ss_dssp             SCTTTTCSSCCCSEEEECHHHHHHHHHCTTTG-GGGGGGCSEEECSSCCCHHHHHHHHT-CSS-CEEEEEECGGGSSEEE
T ss_pred             ccHHHHHHHhCCeEEEcChHHHHHhhcccccc-ccCCcceEEEEcccCCCchheecccc-cCc-eEEeccccccccceee
Confidence            23456788999999999999999998876543 3688999877  88999999999976 587 8999999999987654


Q ss_pred             cC---CCCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCcccccccccCcchhHH
Q psy8225         365 NA---DGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNGYADKKASEK  441 (479)
Q Consensus       365 ~~---~~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~gY~~~~~~~~  441 (479)
                      ..   ....+.+|.+.|      ++.+                     ..++.|||+++    |+ ..            
T Consensus       190 ~~~~~~~~~g~~~~~~p------gv~~---------------------~~~~~Gel~~~----g~-~~------------  225 (358)
T 4gs5_A          190 LKALNGPEASELYVFLP------GIQY---------------------GVDERGCLHIS----GA-VT------------  225 (358)
T ss_dssp             EEECSSTTCCSCEEECT------TCEE---------------------EECTTSEEEEE----SG-GG------------
T ss_pred             cccccccccceeeccCC------CeEE---------------------EecCcCceEEe----cc-cc------------
Confidence            32   223344444333      3433                     33457999887    44 11            


Q ss_pred             HHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         442 KILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       442 ~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                               .+|||+|||+|++|+|| ++++||+||++
T Consensus       226 ---------~~g~~~TGDlg~~d~~g-~~~~GR~dd~I  253 (358)
T 4gs5_A          226 ---------NGQTVQTNDLVEIHGNA-FQWIGRADNVI  253 (358)
T ss_dssp             ---------TTCCEEEEEEEEECSSE-EEEEEEGGGEE
T ss_pred             ---------cCcceecCCccccccCc-eEEcccccCeE
Confidence                     27899999999999998 66779999975

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*

Probab=100.00  E-value=1.4e-33  Score=279.33  Aligned_cols=235  Identities=16%  Similarity=0.024  Sum_probs=184.6

Q ss_pred             CCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhh---hhcCCCCCCeEEEeccc-hhhhhhHHHHHHHHhcCceEE
Q psy8225         204 KNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGR---YQTGLTSDDVVYTTLPL-YHTAGGLLGIGQCLLGGSTVV  279 (479)
Q Consensus       204 ~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~---~~~~~~~~d~~~~~~pl-~h~~g~~~~~~~~l~~G~~~v  279 (479)
                      ...++++++++|||||||.||+|+++|+++...+....   ..+++..+|++++.+|+ +|..++ ..++.++..|++++
T Consensus        86 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~G~~~~  164 (437)
T 2y27_A           86 AVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGL-GAHYGAERAGLTVI  164 (437)
T ss_dssp             SSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHH-HHHHHHHHTTCEEE
T ss_pred             cCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccch-HHHHHHHHcCCEEE
Confidence            34567889999999999999999999999876654333   35678899999999998 566664 45677889999999


Q ss_pred             ecCCCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCC--CCCceeEEE--ecCCChhhHHHHHHHhCcceeeeecc
Q psy8225         280 IRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPED--TQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFYG  355 (479)
Q Consensus       280 ~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~--~l~~lr~~~--G~~l~~~~~~~~~~~~~~~~v~~~YG  355 (479)
                      +.+.+++..+++.|+++++|++.++|+++..|++.......  .++++|.++  |+++++++.+++++.+|. ++++.||
T Consensus       165 ~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~-~v~~~YG  243 (437)
T 2y27_A          165 PFGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEPWTNDMRVAIEQRMGI-DAVDIYG  243 (437)
T ss_dssp             CCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHHTS-EEEEEEE
T ss_pred             eCCCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCccCCHHHHHHHHHHHCc-CEEecCC
Confidence            88888999999999999999999999999998875432222  247888776  899999999999999998 9999999


Q ss_pred             ccccC-c-ccccCCCCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCcccccccc
Q psy8225         356 ATEGN-A-NLMNADGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNGY  433 (479)
Q Consensus       356 ~tE~~-~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~gY  433 (479)
                      +||++ . +....+...  .|.+.    +.+++.++++|+++++          ++++|+.|||++++    . .     
T Consensus       244 ~TE~~g~~~~~~~~~~~--~g~~~----~~~~~~~~i~d~~~g~----------~~~~g~~Gel~v~~----~-t-----  297 (437)
T 2y27_A          244 LSEVMGPGVASECVETK--DGPTI----WEDHFYPEIIDPETGE----------VLPDGELGELVFTS----L-T-----  297 (437)
T ss_dssp             ETTTTEEEEEECCTTTC--SSCEE----CTTTEEEEEECTTTCC----------BCCTTCCEEEEEEE----S-S-----
T ss_pred             chhhcCCeeEEecCCCC--CceeE----ccCceEEEEEcCCCCC----------CCCCCCccEEEEec----C-C-----
Confidence            99984 3 333333221  23221    2236889999988777          67899999999982    1 0     


Q ss_pred             cCcchhHHHHHhhhccCCCcEEEcCCeeEEec-CCcE-----EEecCCCCCC
Q psy8225         434 ADKKASEKKILRNVYSHGDAAFNTGDILIKDK-FQYF-----YFKDRTGDAC  479 (479)
Q Consensus       434 ~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~-dG~l-----~~~GR~~d~~  479 (479)
                       +.      .    |  .++||+|||+|++|+ ||++     +|.||.||++
T Consensus       298 -~~------~----~--~~~~y~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i  336 (437)
T 2y27_A          298 -KE------A----L--PIIRYRTRDLTRLLPGTARTMRRMEKITGRSDDMM  336 (437)
T ss_dssp             -CS------S----S--CCCSEEEEEEECEECCSSSSSCEECCCCEEGGGCE
T ss_pred             -cC------C----c--hhheeecCCEEEEeCCCCCCccccCccccccCCeE
Confidence             00      0    1  168999999999999 6996     9999999984

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}

Probab=100.00  E-value=1.2e-33  Score=280.20  Aligned_cols=235  Identities=15%  Similarity=0.009  Sum_probs=184.8

Q ss_pred             CCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhh---hhcCCCCCCeEEEeccch-hhhhhHHHHHHHHhcCceEE
Q psy8225         204 KNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGR---YQTGLTSDDVVYTTLPLY-HTAGGLLGIGQCLLGGSTVV  279 (479)
Q Consensus       204 ~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~---~~~~~~~~d~~~~~~pl~-h~~g~~~~~~~~l~~G~~~v  279 (479)
                      ...++++++++|||||||.||+|+++|+++...+....   ..+++.++|++++.+|++ |..++ ..++.++..|++++
T Consensus        88 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~-~~~~~~~~~G~~~~  166 (443)
T 2y4o_A           88 AVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGL-GIHYGAERLGCMVV  166 (443)
T ss_dssp             SSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHH-HHHHHHHHHTCEEE
T ss_pred             CCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHH-HHHHHHHHcCCEEE
Confidence            34567889999999999999999999999876554433   356788999999999984 55554 55677888999999


Q ss_pred             ecCCCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCC--CCCceeEEE--ecCCChhhHHHHHHHhCcceeeeecc
Q psy8225         280 IRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPED--TQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFYG  355 (479)
Q Consensus       280 ~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~--~l~~lr~~~--G~~l~~~~~~~~~~~~~~~~v~~~YG  355 (479)
                      +.+.+++..+++.|+++++|++.++|+++..|++.......  .++++|.++  |+++++++.+++++.+|. ++++.||
T Consensus       167 ~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~-~v~~~YG  245 (443)
T 2y4o_A          167 PMSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEPWTQALRNEVETRVGI-DALDIYG  245 (443)
T ss_dssp             CCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHHTC-EEEEEEE
T ss_pred             ECCCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCcCCHHHHHHHHHHhCc-CEEeccC
Confidence            98888999999999999999999999999998875432222  247888776  899999999999999998 8999999


Q ss_pred             ccccCc--ccccCCCCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCcccccccc
Q psy8225         356 ATEGNA--NLMNADGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNGY  433 (479)
Q Consensus       356 ~tE~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~gY  433 (479)
                      +||+++  +....+...  .|.++    +.+++.++++|+++++          ++++|+.|||++++    . .     
T Consensus       246 ~TE~~g~~~~~~~~~~~--~g~~~----~~~~~~~~i~d~~~g~----------~~~~G~~Gel~v~~----~-t-----  299 (443)
T 2y4o_A          246 LSEVMGPGVACECVETK--DGPVI----WEDHFYPEIIDPVTGE----------VLPDGSQGELVFTS----L-T-----  299 (443)
T ss_dssp             ETTTTEEEEEEECTTTC--CSEEE----CTTTEEEEEECTTTCC----------BCCTTCCEEEEEEE----S-S-----
T ss_pred             chhhcCCeEEeccCCCC--CceEE----ccCCeEEEEEcCCCCC----------CCCCCCceEEEEeC----C-C-----
Confidence            999743  333333221  23322    2236889999987777          67899999999982    1 0     


Q ss_pred             cCcchhHHHHHhhhccCCCcEEEcCCeeEEecC-CcE-----EEecCCCCCC
Q psy8225         434 ADKKASEKKILRNVYSHGDAAFNTGDILIKDKF-QYF-----YFKDRTGDAC  479 (479)
Q Consensus       434 ~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~d-G~l-----~~~GR~~d~~  479 (479)
                       +.          .|  .++||+|||+|++|++ |++     +|.||.||++
T Consensus       300 -~~----------~~--p~~~y~TGDl~~~~~~cG~~~~~l~~i~GR~~d~i  338 (443)
T 2y4o_A          300 -KE----------AM--PVIRYRTRDLTALLPPTARAMRRLAKITGRSDDML  338 (443)
T ss_dssp             -CS----------SS--CCSSEEEEEEECEECCSSSSSCEECCCCEESSCCE
T ss_pred             -cc----------cC--hhheeecCCEEEEcCCCCCCccccCccccccCCeE
Confidence             10          01  1689999999999999 997     8999999985

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*

Probab=99.97  E-value=2.5e-30  Score=250.13  Aligned_cols=202  Identities=14%  Similarity=0.047  Sum_probs=160.9

Q ss_pred             CCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhh---hhhcCCCCCCeEEEeccc-hhhhhhHHHHHHHHhcCceEEe
Q psy8225         205 NKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISG---RYQTGLTSDDVVYTTLPL-YHTAGGLLGIGQCLLGGSTVVI  280 (479)
Q Consensus       205 ~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~---~~~~~~~~~d~~~~~~pl-~h~~g~~~~~~~~l~~G~~~v~  280 (479)
                      ..++++++|+|||||||.||+|+++|+++...+...   ....++..+|++++.+|+ +|..|+... +.++..|+ +++
T Consensus        88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~-~~~~~~G~-~v~  165 (369)
T 3hgu_A           88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINK-ERALRLGG-MFF  165 (369)
T ss_dssp             SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHH-HHHHHTTS-CEE
T ss_pred             CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHH-HHHHHcCC-EEE
Confidence            367888999999999999999999999998877743   345678899999999999 999887554 44578888 666


Q ss_pred             cCCCChh-----------------------HHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEE--ecCCCh
Q psy8225         281 RSKFSAS-----------------------NFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRP  335 (479)
Q Consensus       281 ~~~~~~~-----------------------~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~--G~~l~~  335 (479)
                      ...+++.                       .+++.++++++|++.++|+++..|++........+++||.++  |+++++
T Consensus       166 ~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~~  245 (369)
T 3hgu_A          166 SIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVVLQMKQSLAQITLGGTELNL  245 (369)
T ss_dssp             CCCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHHHHHHHHCSEEEEESSCCCH
T ss_pred             CccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhhccccCCeeEEEECCccCCH
Confidence            6777877                       888899999999999999999999887433223467889876  889999


Q ss_pred             hhHHHHH-HHh-CcceeeeeccccccCcccccCCCCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCC
Q psy8225         336 QVWEPFQ-KRF-GLDRICEFYGATEGNANLMNADGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEE  413 (479)
Q Consensus       336 ~~~~~~~-~~~-~~~~v~~~YG~tE~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~  413 (479)
                      ++++++. +.| +. ++++.||+||+++++...+.  .++|+++...+..++++++|+|+++++          +|++|+
T Consensus       246 ~~~~~~~~~~~p~~-~v~~~YG~TE~~~~~~~~~~--~~~G~~~~~~~~~~~~~v~ivD~~~g~----------~vp~G~  312 (369)
T 3hgu_A          246 DEIKFIASEILPDC-EFSASYGSTSALGVSRSLLI--TSESQQVIYDSFSPFITYDVVDSITAQ----------TVEYGE  312 (369)
T ss_dssp             HHHHHHHHHTCTTS-EEEEEEEEGGGTEEEEECCB--CTTCSSCEEECCTTTEEEEEECTTTCS----------BCCTTC
T ss_pred             HHHHHHHHHhCCCc-EEEcccCchhhhcceecccc--ccCCCcccccCCCCCeEEEEECCCCCc----------CCCCCC
Confidence            9999999 899 66 99999999999876654332  147887433333558999999987777          679999


Q ss_pred             CceEEEEe
Q psy8225         414 PGILIGMI  421 (479)
Q Consensus       414 ~Gel~v~~  421 (479)
                      .|||+++.
T Consensus       313 ~GEl~vt~  320 (369)
T 3hgu_A          313 RGNVIVTH  320 (369)
T ss_dssp             EEEEEEEE
T ss_pred             ceEEEEEE
Confidence            99999983

>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*

Probab=98.00  E-value=1.3e-05  Score=79.68  Aligned_cols=123  Identities=15%  Similarity=0.045  Sum_probs=69.2

Q ss_pred             CCceeEE---EecCCChhhHHHHHHHhCcceee-eeccccccCcccccCC-CCCCcccccCccccCCCceeeEEeCCCCC
Q psy8225         322 QHSVKMM---IGNGLRPQVWEPFQKRFGLDRIC-EFYGATEGNANLMNAD-GKVGAVGYIPYIAIPFYPVGLIKCDPETS  396 (479)
Q Consensus       322 l~~lr~~---~G~~l~~~~~~~~~~~~~~~~v~-~~YG~tE~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~i~d~~~~  396 (479)
                      .++++.+   .++.+ ..-+.++++.+|..+++ ..|++||+...+-..+ ..++..+..+-  +...-.+..-+++...
T Consensus       296 WPnl~~l~~~~~G~~-~~Y~~~l~~~~g~~p~~~~~Y~ASEg~~gi~~~p~~~~~~~~~~L~--~~~~ffEFip~~~~~~  372 (581)
T 4eql_A          296 WPNTKYIETVVTGSM-GQYVPMLNYYCNDLPLVSTTYGSSETTFGINLDPLCKPEDVSYTFM--PNMSYFEFIPMDGGDK  372 (581)
T ss_dssp             STTCCEEEEECSGGG-GGGHHHHHHHHTTCCEECCEEECSSCEEEECSCTTSCGGGCCEEEC--TTSSEEEEEECSTTCC
T ss_pred             CCCCcEEEEEcCCCh-HHHHHHHHHHcCCCccccCccccccceeeeccCCCCCcccCceeec--CCcEEEEEEeccccCC
Confidence            5675554   33333 44556676666544666 8999999643322222 22233443221  1111134433332211


Q ss_pred             CccccCCCccccccCCCCceEEEEeecCCcccccccccCcchhHHHHHhhhccCCCcEEEcCCeeEEec----CCcEEEe
Q psy8225         397 EPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDK----FQYFYFK  472 (479)
Q Consensus       397 ~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~----dG~l~~~  472 (479)
                      ..+    -...+|+.|+.+||++...        .|.|                   -|++||+.+++.    ..++.|+
T Consensus       373 ~~~----v~l~eVe~G~~YelViTt~--------~GL~-------------------RYr~GD~v~v~~f~~~~p~i~f~  421 (581)
T 4eql_A          373 NDV----VDLEDVKLGCTYEPVVTNF--------AGLY-------------------RMRVGDIVLVTGFYNNAPQFKFV  421 (581)
T ss_dssp             SSC----EEGGGCCTTCEEEEEEECS--------SSCC-------------------SEECCEEEEEEEEETTEEEEEEE
T ss_pred             CcE----eCHHHcCCCceEEEEEeec--------ccee-------------------eEEcCCEEEEcccCCCCcEEEEE
Confidence            101    1234678999999999722        2221                   189999999986    3589999


Q ss_pred             cCCCCC
Q psy8225         473 DRTGDA  478 (479)
Q Consensus       473 GR~~d~  478 (479)
                      ||.||+
T Consensus       422 gR~~~~  427 (581)
T 4eql_A          422 RRENVV  427 (581)
T ss_dssp             EETTEE
T ss_pred             EecCCE
Confidence            999986

>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}

Probab=97.76  E-value=8.2e-05  Score=74.20  Aligned_cols=123  Identities=15%  Similarity=0.123  Sum_probs=69.5

Q ss_pred             CCceeEE---EecCCChhhHHHHHHHhCcceee-eeccccccCcccccCC-CCCCcccccCccccCCCceeeEEeCCC--
Q psy8225         322 QHSVKMM---IGNGLRPQVWEPFQKRFGLDRIC-EFYGATEGNANLMNAD-GKVGAVGYIPYIAIPFYPVGLIKCDPE--  394 (479)
Q Consensus       322 l~~lr~~---~G~~l~~~~~~~~~~~~~~~~v~-~~YG~tE~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~i~d~~--  394 (479)
                      .++++.+   .++.+ ..-+.+++..+|..+++ ..|++||+...+-..+ ..++..+..+.+  ...-.++.-+++.  
T Consensus       301 WPnlk~l~~~~tG~~-~~Y~~~l~~~~g~~p~~~~~Y~ASEg~~gi~~~p~~~p~~~~~~L~p--~~~ffEFIP~~~~~~  377 (609)
T 4b2g_A          301 WPNTKYLDVIVTGAM-AQYIPTLDYYSGGLPLACTMYASSECYFGLNLNPMSKPSEVSYTIMP--NMAYFEFLPHEHSSI  377 (609)
T ss_dssp             STTCCEEEEECSGGG-GGGHHHHHHHHTSCCEECCEEECSSCEEEECSCTTSCGGGCCEEECT--TSCEEEEEEGGGTTS
T ss_pred             CCCCcEEEEEccCCh-HHHHHHHHHHcCCCccccCcccccceeeeeecCCCCCcccCceeecC--CcEEEEEEecccccc
Confidence            5676643   33334 44446676666544566 8999999753332222 223344432211  1111333323321  


Q ss_pred             ------CCCccccCCCccccccCCCCceEEEEeecCCcccccccccCcchhHHHHHhhhccCCCcEEEcCCeeEEec---
Q psy8225         395 ------TSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDK---  465 (479)
Q Consensus       395 ------~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~---  465 (479)
                            +.+.+     ...+|+.|+.+||++..        ..|+|+                   |++||+.+++.   
T Consensus       378 ~~~~~~~~~~v-----~l~eVe~G~~YelViTt--------~~GL~R-------------------Yr~GD~v~v~~f~~  425 (609)
T 4b2g_A          378 PLSRDSPPRLV-----DLAHVEVGKEYELVITT--------YAGLYR-------------------YRVGDILRVTGFHN  425 (609)
T ss_dssp             CCCSSSCCCCE-----EGGGCCTTCEEEEEEEC--------TTSCCS-------------------EEEEEEEEEEEEET
T ss_pred             ccccCCCCccc-----cHhHcCCCCeEEEehhh--------hhhhhh-------------------eecCCEEEEeecCC
Confidence                  01111     12367899999999872        234322                   89999999974   


Q ss_pred             -CCcEEEecCCCCCC
Q psy8225         466 -FQYFYFKDRTGDAC  479 (479)
Q Consensus       466 -dG~l~~~GR~~d~~  479 (479)
                       ..++.|+||.+|+.
T Consensus       426 ~~p~i~~~gR~~~~l  440 (609)
T 4b2g_A          426 SAPQFHFVRRKNVLL  440 (609)
T ss_dssp             TEEEEEEEEETTCCB
T ss_pred             CCcEEEEEEecCCeE
Confidence             46899999999873

>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}

Probab=97.66  E-value=8.8e-05  Score=73.62  Aligned_cols=125  Identities=12%  Similarity=0.030  Sum_probs=67.4

Q ss_pred             CCceeEE---EecCCChhhHHHHHHHhCcceee-eeccccccCcccccCC-CCCCcccccCccccCCCceeeEEeCCCCC
Q psy8225         322 QHSVKMM---IGNGLRPQVWEPFQKRFGLDRIC-EFYGATEGNANLMNAD-GKVGAVGYIPYIAIPFYPVGLIKCDPETS  396 (479)
Q Consensus       322 l~~lr~~---~G~~l~~~~~~~~~~~~~~~~v~-~~YG~tE~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~i~d~~~~  396 (479)
                      .++++.+   .++.+ ..-+.++++.+|..+++ ..|++||+...+-..+ ..++..+..+.+  ...-.+..-+++...
T Consensus       301 WPnl~~i~~~~~G~~-~~Y~~~l~~~~g~~p~~~~~Y~ASEg~~gi~~~p~~~~~~~~~~L~p--~~~ffEFiP~~~~~~  377 (581)
T 4epl_A          301 FPNAKYVYGIMTGSM-EPYVPKLRHYAGDLPLVSHDYGSSEGWIAANVTPRLSPEEATFAVIP--NLGYFEFLPVSETGE  377 (581)
T ss_dssp             CTTCCCEEEECSGGG-GGGHHHHHHHHTTSCEEECCEEETTEEEEECCCTTSCTTTCCEEECT--TSCEEEEEEC-----
T ss_pred             CCCCceEEEEeCCCh-HHHHHHHHHHcCCCccccCceeccceeeeeecCCCCCccccceeecC--CcEEEEEEecccccC
Confidence            4667543   34444 33446666666544666 8999999743332222 223334443211  111133433332211


Q ss_pred             CccccCCCccccccCCCCceEEEEeecCCcccccccccCcchhHHHHHhhhccCCCcEEEcCCeeEEecC----CcEEEe
Q psy8225         397 EPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKF----QYFYFK  472 (479)
Q Consensus       397 ~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~d----G~l~~~  472 (479)
                      +  ..+.=...+|+.|+.+||++...        .|.|                   -|++||+.+++.-    .++.|+
T Consensus       378 ~--~~~~v~l~eve~G~~YelviTt~--------~GL~-------------------RYr~GD~v~v~g~~~~~p~~~~~  428 (581)
T 4epl_A          378 G--EEKPVGLTQVKIGEEYEVVITNY--------AGLY-------------------RYRLGDVVKVIGFYNNTPQLKFI  428 (581)
T ss_dssp             ----CCCEEGGGCCTTCEEEEEEEST--------TSCS-------------------SEEEEEEEEEEEEETTEEEEEEE
T ss_pred             C--CCceeeHHHcCCCCeEEEEEeec--------ccee-------------------eEEcCCEEEEecccCCCcEEEEE
Confidence            0  00001124678999999999722        2221                   1999999999752    579999


Q ss_pred             cCCCCC
Q psy8225         473 DRTGDA  478 (479)
Q Consensus       473 GR~~d~  478 (479)
                      ||.||+
T Consensus       429 gR~~~~  434 (581)
T 4epl_A          429 CRRNLI  434 (581)
T ss_dssp             EETTCC
T ss_pred             eecCCe
Confidence            999986

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*

Probab=93.43  E-value=0.62  Score=44.94  Aligned_cols=96  Identities=13%  Similarity=0.103  Sum_probs=75.6

Q ss_pred             CCCccccEEE------------Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCc--hHHHHHHHHhhhcCceeeeec
Q psy8225          60 VPMTGAYKYT------------VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQ--PEYVCMWLGLSKIGVVAAFIN  124 (479)
Q Consensus        60 ~p~~~a~~~~------------~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~--~e~~~~~lA~~~~G~~~v~l~  124 (479)
                      .++.++++..            +|. .+...+..++..+...|+.++|++....+-.  ...+...++++..|+.+++..
T Consensus        88 ~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~  167 (437)
T 2y27_A           88 PQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPFG  167 (437)
T ss_dssp             CGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECCC
T ss_pred             ChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeCC
Confidence            4566776665            789 9888888888888888999999999988853  333455788889999988765


Q ss_pred             CCcchHHHHHHHHhccceEEEeChhhHHHHHH
Q psy8225         125 TNQRQHILIHSIKVAECKAIIYGAELSEALTE  156 (479)
Q Consensus       125 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~  156 (479)
                      . ...+.+...+++.++.+++........+.+
T Consensus       168 ~-~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~  198 (437)
T 2y27_A          168 G-GQTEKQVQLIQDFRPDIIMVTPSYMLSIAD  198 (437)
T ss_dssp             S-CCHHHHHHHHHHHCCSEEEECHHHHHHHHH
T ss_pred             C-CCHHHHHHHHHHhCCCEEEECHHHHHHHHH
Confidence            5 478889999999999999998876655544

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}

Probab=93.06  E-value=0.72  Score=44.55  Aligned_cols=96  Identities=14%  Similarity=0.112  Sum_probs=75.4

Q ss_pred             CCCccccEEE------------Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCc--hHHHHHHHHhhhcCceeeeec
Q psy8225          60 VPMTGAYKYT------------VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQ--PEYVCMWLGLSKIGVVAAFIN  124 (479)
Q Consensus        60 ~p~~~a~~~~------------~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~--~e~~~~~lA~~~~G~~~v~l~  124 (479)
                      .++.++++..            +|. .+...+..++..+...|+.++|++....+-+  ...+...++++..|+.+++..
T Consensus        90 ~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~  169 (443)
T 2y4o_A           90 PREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPMS  169 (443)
T ss_dssp             CGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECCC
T ss_pred             ChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEECC
Confidence            4566676655            788 9888888888888888999999999988853  334556788889999988776


Q ss_pred             CCcchHHHHHHHHhccceEEEeChhhHHHHHH
Q psy8225         125 TNQRQHILIHSIKVAECKAIIYGAELSEALTE  156 (479)
Q Consensus       125 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~  156 (479)
                      +. ..+.+...+++.++.+++........+.+
T Consensus       170 ~~-~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~  200 (443)
T 2y4o_A          170 GG-QTEKQVQLIRDFEPKIILVTPSYMLNLID  200 (443)
T ss_dssp             SC-CHHHHHHHHHHHCCSEEEECHHHHHHHHH
T ss_pred             CC-CHHHHHHHHHHhCCcEEEECHHHHHHHHH
Confidence            54 78889999999999999998876655543

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*

Probab=92.78  E-value=0.54  Score=45.33  Aligned_cols=95  Identities=14%  Similarity=0.089  Sum_probs=75.8

Q ss_pred             CccccEEE------------Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCc--hHHHHHHHHhhhcCceeeeecCC
Q psy8225          62 MTGAYKYT------------VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQ--PEYVCMWLGLSKIGVVAAFINTN  126 (479)
Q Consensus        62 ~~~a~~~~------------~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~--~e~~~~~lA~~~~G~~~v~l~~~  126 (479)
                      +.+|++..            +|. .+...+..++..+...|+.++|++....+-+  ...+..+++++..|+.+++.++ 
T Consensus        86 ~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~-  164 (436)
T 3qov_A           86 RDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAA-  164 (436)
T ss_dssp             HHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCS-
T ss_pred             CCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCC-
Confidence            56676665            899 9988888888888888999999999988743  3445567888999998887654 


Q ss_pred             cchHHHHHHHHhccceEEEeChhhHHHHHHh
Q psy8225         127 QRQHILIHSIKVAECKAIIYGAELSEALTEV  157 (479)
Q Consensus       127 ~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~  157 (479)
                      ..++.+...+++.++.+++........+.+.
T Consensus       165 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~  195 (436)
T 3qov_A          165 GNSKRQIKFISDFKTTALHAIPSYAIRLAEV  195 (436)
T ss_dssp             CCHHHHHHHHHHHTCCEEECCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHCCCEEEECHHHHHHHHHH
Confidence            4678899999999999999988766655443

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=86.73  E-value=9  Score=37.36  Aligned_cols=108  Identities=13%  Similarity=-0.005  Sum_probs=76.9

Q ss_pred             cCCCccccEEE------------Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHH-HHHHHHhhhcCceeeeec
Q psy8225          59 EVPMTGAYKYT------------VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEY-VCMWLGLSKIGVVAAFIN  124 (479)
Q Consensus        59 ~~p~~~a~~~~------------~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~-~~~~lA~~~~G~~~v~l~  124 (479)
                      ..++.+|++..            +|+ .+...+.....   ..++.++|++...+|-...+ +..+++++..|+.++..+
T Consensus       160 ~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~  236 (501)
T 3ipl_A          160 FNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKE---SLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVD  236 (501)
T ss_dssp             CCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHH---HTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS
T ss_pred             CCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHH---hhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeCC
Confidence            35678888876            788 88776665544   34889999999888865433 334677888898887665


Q ss_pred             CCcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCC-cceEEecC
Q psy8225         125 TNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIP-GISLYAAG  170 (479)
Q Consensus       125 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-~~~~~~~~  170 (479)
                       ...++.+...+++.++.+++........+.+...... .++.+..+
T Consensus       237 -~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~lr~i~~g  282 (501)
T 3ipl_A          237 -KFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEPYNLQKILLG  282 (501)
T ss_dssp             -SCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSCTTCCEEEEC
T ss_pred             -CCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCcCcccEEEEe
Confidence             5788999999999999999998887766654332221 44544433

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*

Probab=85.44  E-value=3.2  Score=38.70  Aligned_cols=93  Identities=6%  Similarity=-0.038  Sum_probs=65.6

Q ss_pred             CCCccccEEE------------Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCch--HHHHHHHHhhhcCceeeeec
Q psy8225          60 VPMTGAYKYT------------VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQP--EYVCMWLGLSKIGVVAAFIN  124 (479)
Q Consensus        60 ~p~~~a~~~~------------~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~--e~~~~~lA~~~~G~~~v~l~  124 (479)
                      .++.++.+..            +|. .+...+..++..+...|+.++|++...+|-+.  --....+++...|+.+++. 
T Consensus        89 ~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~~-  167 (369)
T 3hgu_A           89 PADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSI-  167 (369)
T ss_dssp             CTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEECC-
T ss_pred             CccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEECc-
Confidence            4566677665            788 88888877777777789999999999988622  2234445558888855543 


Q ss_pred             CCcchH-----------------------HHHHHHHhccceEEEeChhhHHHH
Q psy8225         125 TNQRQH-----------------------ILIHSIKVAECKAIIYGAELSEAL  154 (479)
Q Consensus       125 ~~~~~~-----------------------~l~~~l~~~~~~~vi~~~~~~~~~  154 (479)
                       .+.+.                       ++.+.+++.++.+++........+
T Consensus       168 -~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l  219 (369)
T 3hgu_A          168 -DIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLREL  219 (369)
T ss_dssp             -CCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHH
T ss_pred             -cCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHH
Confidence             33333                       666788999999999887655443

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A

Probab=84.63  E-value=12  Score=37.02  Aligned_cols=107  Identities=11%  Similarity=0.033  Sum_probs=76.1

Q ss_pred             CCCccccEEE------------Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHH---HHHHhhhcCceeeee
Q psy8225          60 VPMTGAYKYT------------VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVC---MWLGLSKIGVVAAFI  123 (479)
Q Consensus        60 ~p~~~a~~~~------------~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~---~~lA~~~~G~~~v~l  123 (479)
                      .|+.+|++..            +|+ .+...+......   .++.++|++...+|-...+-.   .+++++..|+..+..
T Consensus       180 ~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~  256 (539)
T 1mdb_A          180 KSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEV---CWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLS  256 (539)
T ss_dssp             CTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHH---HTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEEC
T ss_pred             CcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHh---hCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEEEC
Confidence            4677787776            888 887776655443   478899999988886544432   478888899888765


Q ss_pred             cCCcchHHHHHHHHhccceEEEeChhhHHHHHHhh----ccCCcceEEecC
Q psy8225         124 NTNQRQHILIHSIKVAECKAIIYGAELSEALTEVK----DSIPGISLYAAG  170 (479)
Q Consensus       124 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~----~~~~~~~~~~~~  170 (479)
                       +...++.+...+++.++.+++........+.+..    ...+.++.+..+
T Consensus       257 -~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~g  306 (539)
T 1mdb_A          257 -PSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVG  306 (539)
T ss_dssp             -SSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEE
T ss_pred             -CCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCCCccceeEEEEc
Confidence             4577889999999999999999887666554332    123456655444

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A

Probab=83.97  E-value=11  Score=36.87  Aligned_cols=107  Identities=10%  Similarity=-0.012  Sum_probs=75.0

Q ss_pred             CCCccccEEE------------Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHH--HHHHhhhcCceeeeec
Q psy8225          60 VPMTGAYKYT------------VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVC--MWLGLSKIGVVAAFIN  124 (479)
Q Consensus        60 ~p~~~a~~~~------------~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~--~~lA~~~~G~~~v~l~  124 (479)
                      .|+.+|++..            +|+ .+...+..++..+   ++.++|++...+|-...+-.  .+++++ .|+..+.. 
T Consensus       168 ~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~~d~~l~~~p~~~~~~~~~~~~~~~-~G~~~v~~-  242 (517)
T 3r44_A          168 GGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTI---DVRYRDRLLLPLPMFHVAALTTVIFSAM-RGVTLISM-  242 (517)
T ss_dssp             CTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHS---CCCTTCEEEECSCTTSHHHHHHHHHHHH-HTCEEEEC-
T ss_pred             CCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhc---CCCCCCEEEEeCchHHHHHHHHHHHHHh-cCeEEEEe-
Confidence            3567777766            888 8877776665544   88999999998887654433  245555 78877765 


Q ss_pred             CCcchHHHHHHHHhccceEEEeChhhHHHHHHhh----ccCCcceEEecCC
Q psy8225         125 TNQRQHILIHSIKVAECKAIIYGAELSEALTEVK----DSIPGISLYAAGT  171 (479)
Q Consensus       125 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~----~~~~~~~~~~~~~  171 (479)
                      +...+..+...+++.++.++.........+.+..    ...+.++.+..+.
T Consensus       243 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG  293 (517)
T 3r44_A          243 PQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELDAPDFRYFITGG  293 (517)
T ss_dssp             SSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHHHCCCTTCCEEEECS
T ss_pred             CCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccccCCCCcccEEEECC
Confidence            5678889999999999999999887766554322    1234566555443

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*

Probab=81.65  E-value=6.4  Score=39.03  Aligned_cols=93  Identities=12%  Similarity=0.140  Sum_probs=69.1

Q ss_pred             CccccEEE------------Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHH--HHHHHHhhhcCceeeeecCC
Q psy8225          62 MTGAYKYT------------VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEY--VCMWLGLSKIGVVAAFINTN  126 (479)
Q Consensus        62 ~~~a~~~~------------~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~--~~~~lA~~~~G~~~v~l~~~  126 (479)
                      +.+|++..            +|+ .+...+......+...++.++|++...+|-...+  ...+++.+ .|+..+..+ .
T Consensus       192 ~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~-~  269 (548)
T 2d1s_A          192 EQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLT-K  269 (548)
T ss_dssp             TCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECC-C
T ss_pred             CCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcC-C
Confidence            67777775            888 8877766555443335788999998888865443  33356777 888887664 5


Q ss_pred             cchHHHHHHHHhccceEEEeChhhHHHHHH
Q psy8225         127 QRQHILIHSIKVAECKAIIYGAELSEALTE  156 (479)
Q Consensus       127 ~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~  156 (479)
                      ..++.+...+++.++.+++........+.+
T Consensus       270 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~  299 (548)
T 2d1s_A          270 FDEETFLKTLQDYKCTSVILVPTLFAILNK  299 (548)
T ss_dssp             CCHHHHHHHHHHTTEEEEEECHHHHHHHHH
T ss_pred             CCHHHHHHHHHHcCCcEEEecHHHHHHHHh
Confidence            788899999999999999998877766544

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*

Probab=80.70  E-value=12  Score=37.06  Aligned_cols=93  Identities=12%  Similarity=0.020  Sum_probs=70.1

Q ss_pred             CCCccccEEE------------Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHH---HHHHhhhcCceeeee
Q psy8225          60 VPMTGAYKYT------------VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVC---MWLGLSKIGVVAAFI  123 (479)
Q Consensus        60 ~p~~~a~~~~------------~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~---~~lA~~~~G~~~v~l  123 (479)
                      .++.+|++..            +|+ .+...+...+..   .++.++|++...+|-...+-.   .+++.+..|+..+..
T Consensus       189 ~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~  265 (544)
T 3o83_A          189 PADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEI---CGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMA  265 (544)
T ss_dssp             CTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHH---TTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEEC
T ss_pred             CccceEEEEECCCcccCCceEEechHHHHHHHHHHHHH---hCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEEEC
Confidence            4677888776            888 887777665544   488999999999886544433   367888889887765


Q ss_pred             cCCcchHHHHHHHHhccceEEEeChhhHHHHHH
Q psy8225         124 NTNQRQHILIHSIKVAECKAIIYGAELSEALTE  156 (479)
Q Consensus       124 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~  156 (479)
                      . ...+..+...+++.++.++.........+.+
T Consensus       266 ~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~  297 (544)
T 3o83_A          266 P-NPEPLNCFSIIQRHQVNMASLVPSAVIMWLE  297 (544)
T ss_dssp             S-SCCHHHHHHHHHHHTCCEEEECHHHHHHHHH
T ss_pred             C-CCCHHHHHHHHHHHCCCEEEechHHHHHHHh
Confidence            4 5678888999999999999998876655543

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*

Probab=80.67  E-value=14  Score=36.04  Aligned_cols=94  Identities=12%  Similarity=0.108  Sum_probs=70.3

Q ss_pred             CCCccccEEE------------Eeh-hhHHHHHHHHHHHHHcCC--CCCCEEEEEcCCchHHH--HHHHHhhhcCceeee
Q psy8225          60 VPMTGAYKYT------------VTF-QVEDHSNRIANFFKSKGL--QRGDAVALFMEGQPEYV--CMWLGLSKIGVVAAF  122 (479)
Q Consensus        60 ~p~~~a~~~~------------~Ty-~l~~~~~~la~~L~~~gi--~~gd~V~i~~~n~~e~~--~~~lA~~~~G~~~v~  122 (479)
                      .|+.+|++..            +|+ .+...+..++.   ..++  .++|++...+|-...+-  ..+++.+..|+..+.
T Consensus       151 ~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~---~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~  227 (504)
T 1t5h_X          151 EPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMST---QVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVV  227 (504)
T ss_dssp             CTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHH---TTCCCSSTTCEEEECSCTTSHHHHTTTHHHHHHTTCEEEE
T ss_pred             CCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHH---hhCCCCCCCceEEeecchhhcchHHHHHHHHHHcCceEEe
Confidence            4677787776            889 88776665543   3367  77888888888655443  356788889988886


Q ss_pred             ecCCcchHHHHHHHHhccceEEEeChhhHHHHHHh
Q psy8225         123 INTNQRQHILIHSIKVAECKAIIYGAELSEALTEV  157 (479)
Q Consensus       123 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~  157 (479)
                      .+ ...+..+...+++.++.+++........+.+.
T Consensus       228 ~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~  261 (504)
T 1t5h_X          228 VE-EFRPVDALQLVQQEQVTSLFATPTHLDALAAA  261 (504)
T ss_dssp             CS-SCCHHHHHHHHHHHTCCEEECCHHHHHHHHHH
T ss_pred             CC-CCCHHHHHHHHHHhCCeEEEeChHHHHHHHhh
Confidence            65 46788899999999999999988877666543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	479
d1pg4a_	643	e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en	1e-51
d1ry2a_	640	e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast	8e-43
d1v25a_	534	e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0	9e-39
d1lcia_	541	e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali	3e-38
d1amua_	514	e.23.1.1 (A:) Phenylalanine activating domain of g	3e-29
d1amua_	514	e.23.1.1 (A:) Phenylalanine activating domain of g	0.002
d1mdba_	536	e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B	1e-25
d3cw9a1	503	e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc	3e-25

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

 Score =  182 bits (464), Expect = 1e-51
 Identities = 77/436 (17%), Positives = 156/436 (35%), Gaps = 51/436 (11%)

Query: 69  TVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQ 127
            +++ ++     R AN     G+++GD VA++M   PE     L  ++IG V + I    
Sbjct: 103 HISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGF 162

Query: 128 RQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLD 187
               +   I  +  + +I   E   A   +                  +  ++   T  D
Sbjct: 163 SPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSD 222

Query: 188 EELPE---------VSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAM-FMA 237
            +  E         +   SP    +     D L  +YTSG+TG PK  + T    + + A
Sbjct: 223 IDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAA 282

Query: 238 ISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSK----FSASNFWKDC 293
            + +Y       D+ + T  +    G    +   L  G+T ++        + +   +  
Sbjct: 283 TTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVV 342

Query: 294 IKYNCTVAQYIGEMCRYLLAVPEKPEDTQ--HSVKMMI--GNGLRPQVWEPFQKRFGLD- 348
            K+   +        R L+A  +K  +     S++++   G  + P+ WE + K+ G + 
Sbjct: 343 DKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEK 402

Query: 349 -RICEFYGATEGNANLMN-----ADGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNK 402
             + + +  TE    ++       + K G+         PF+ V     D E        
Sbjct: 403 CPVVDTWWQTETGGFMITPLPGAIELKAGSATR------PFFGVQPALVDNEGH------ 450

Query: 403 DGLCIPCKAEEPG-ILIGMIKESRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDIL 461
                P +    G ++I      +A + F  +       ++  +  +S     + +GD  
Sbjct: 451 -----PQEGATEGNLVITDSWPGQARTLFGDH-------ERFEQTYFSTFKNMYFSGDGA 498

Query: 462 IKDKFQYFYFKDRTGD 477
            +D+  Y++   R  D
Sbjct: 499 RRDEDGYYWITGRVDD 514

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  158 bits (400), Expect = 8e-43
 Identities = 79/431 (18%), Positives = 148/431 (34%), Gaps = 38/431 (8%)

Query: 69  TVTF-QVEDHSNRIANFFKSK-GLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTN 126
           ++T+ ++ +   ++A       G+++GD VA++M   PE +   L +S+IG + + +   
Sbjct: 90  SITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAG 149

Query: 127 QRQHILIHSIKVAECKAII---------YGAELSEALTEVKDSIPGISLYAAGTRRKPQA 177
              + L   I   + K +I            E    + +     PG+       R+    
Sbjct: 150 FSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLV-YRKTNNP 208

Query: 178 KVLPSTTLLDEELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMA 237
            V        +   E                D L  +YTSG+TG PK    +    +  A
Sbjct: 209 SVAFHAPRDLDWATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGA 268

Query: 238 IS-GRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKF----SASNFWKD 292
           +   RY      +DV +T   +    G    +   LL G   ++        + S +W  
Sbjct: 269 LLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDI 328

Query: 293 CIKYNCTVAQYIGEMCRYLLAVPEKPEDTQH--SVKMMI--GNGLRPQVWEPFQKRFGLD 348
             ++  T         R L    +   +     S++ +   G  +  +VWE + ++ G +
Sbjct: 329 IDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKN 388

Query: 349 R--ICEFYGATEGNANLMNADGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLC 406
              I + Y  TE  ++L+               + PF+ +  +  DP T E         
Sbjct: 389 EIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEE-------- 440

Query: 407 IPCKAEEPGILIGMIKESRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKF 466
               +   G+L     ++   S             + L    +     + TGD   KDK 
Sbjct: 441 -LNTSHAEGVLAV---KAAWPSFARTIWKN---HDRYLDTYLNPYPGYYFTGDGAAKDKD 493

Query: 467 QYFYFKDRTGD 477
            Y +   R  D
Sbjct: 494 GYIWILGRVDD 504

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

 Score =  145 bits (367), Expect = 9e-39
 Identities = 76/416 (18%), Positives = 148/416 (35%), Gaps = 31/416 (7%)

Query: 68  YTVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTN 126
           +  T+ +V   + R+    ++ G+  GD VA        ++  +  +  +G V    N  
Sbjct: 39  HRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPR 98

Query: 127 QRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLL 186
                + + +  AE K +++   L   +  ++  +  +           Q  V+      
Sbjct: 99  LSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTV-----------QHFVVMDEKAP 147

Query: 187 DEELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTH--VRAMFMAISGRYQT 244
           +  L    A     D  +          YT+GTTGLPK  V +H  +    +A S    T
Sbjct: 148 EGYLAYEEALGEEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGT 207

Query: 245 GLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQYI 304
            L+  DVV   +P++H     L     L+G   V+   +   ++  +       T    +
Sbjct: 208 ALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGV 267

Query: 305 GEMCRYLLAVPEKPEDTQHSVK-MMIGNGLRPQVWEPFQKRFGLDRICEFYGATEGNANL 363
             +   L    E       +++ +++G    P+      +R G+  + + YG TE +  +
Sbjct: 268 PTVWLALADYLESTGHRLKTLRRLVVGGSAAPRSLIARFERMGV-EVRQGYGLTETSPVV 326

Query: 364 MNADGKVGAVGYIPYIAIPFY-PVGLIKCDPETSEPIRNKDGLCIPCKAEEPG-ILIGMI 421
           +    K           +      G     P     + +++G  +P   +  G + +   
Sbjct: 327 VQNFVKSHLESLSEEEKLTLKAKTG--LPIPLVRLRVADEEGRPVPKDGKALGEVQL--- 381

Query: 422 KESRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGD 477
              +      GY   + + +  L       D  F TGDI + D+  Y   KDR  D
Sbjct: 382 ---KGPWITGGYYGNEEATRSALT-----PDGFFRTGDIAVWDEEGYVEIKDRLKD 429

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

 Score =  144 bits (363), Expect = 3e-38
 Identities = 78/419 (18%), Positives = 151/419 (36%), Gaps = 38/419 (9%)

Query: 69  TVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQ 127
            +T+ +  + S R+A   K  GL     + +  E   ++    LG   IGV  A  N   
Sbjct: 47  NITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIY 106

Query: 128 RQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLD 187
            +  L++S+ +++   +    +  + +  V+  +P I        +          T + 
Sbjct: 107 NERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVT 166

Query: 188 EELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTH---VRAMFMAISGRYQT 244
             LP    +        ++       + +SG+TGLPK   + H         A    +  
Sbjct: 167 SHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGN 226

Query: 245 GLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQYI 304
            +  D  + + +P +H  G    +G  + G   V++  +F    F +    Y    A  +
Sbjct: 227 QIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMY-RFEEELFLRSLQDYKIQSALLV 285

Query: 305 GEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFYGATEGNAN 362
             +  +        +    ++  +   G  L  +V E   KRF L  I + YG TE  + 
Sbjct: 286 PTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSA 345

Query: 363 LMN---ADGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPG-ILI 418
           ++     D K GAVG      +PF+   ++  D +T +               + G + +
Sbjct: 346 ILITPEGDDKPGAVGK----VVPFFEAKVV--DLDTGK----------TLGVNQRGELCV 389

Query: 419 GMIKESRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGD 477
                 R     +GY +   +            D   ++GDI   D+ ++F+  DR   
Sbjct: 390 ------RGPMIMSGYVNNPEATNA-----LIDKDGWLHSGDIAYWDEDEHFFIVDRLKS 437

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

 Score =  118 bits (296), Expect = 3e-29
 Identities = 65/455 (14%), Positives = 136/455 (29%), Gaps = 57/455 (12%)

Query: 35  KQLISGMQKTLPTYARP-----LFVRTIREVPMTGAYKY---TVTF-QVEDHSNRIANFF 85
           +Q +  +  T   Y R      LF   + + P   A       +T+ ++   +N++A  F
Sbjct: 6   EQYLFAVNNTKAEYPRDKTIHQLFEEQVSKRPNNVAIVCENEQLTYHELNVKANQLARIF 65

Query: 86  KSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVAECKAII 145
             KG+ +   V + ME   +     L + K G     I+    +  + + +  ++ + ++
Sbjct: 66  IEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLL 125

Query: 146 YGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTEDIKKN 205
               L   +  ++ +                        +   E   +  +  T     +
Sbjct: 126 TQKHLVHLIHNIQFNGQ----------------------VEIFEEDTIKIREGTNLHVPS 163

Query: 206 KPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGL 265
           K +D    IYTSGTTG PK  ++ H     + +       +T  D +     +   A   
Sbjct: 164 KSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVW 223

Query: 266 LGIGQCLLGGSTVV-IRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHS 324
                 L G S  + ++   +    ++  I         +           +        
Sbjct: 224 EMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVV---HLDPERILSIQ 280

Query: 325 VKMMIGNGLRPQVWEPFQKRFGLDRICEFYGATEGNANLMNADGKVGAVGYIPYIAIPFY 384
             +  G+   P +   ++++            T      +     +G    I     P  
Sbjct: 281 TLITAGSATSPSLVNKWKEKVTYINAYGPTETTICATTWVATKETIGHSVPIGA---PIQ 337

Query: 385 PVGLIKCDPETSEPIRNKDG-LCIPCKAEEPGILIGMIKESRAESHFNGYA-DKKASEKK 442
              +   D         + G LCI                   E    GY    + + +K
Sbjct: 338 NTQIYIVDENLQLKSVGEAGELCI-----------------GGEGLARGYWKRPELTSQK 380

Query: 443 ILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGD 477
            + N +  G+  + TGD           +  R  +
Sbjct: 381 FVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDN 415

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

 Score = 38.3 bits (88), Expect = 0.002
 Identities = 13/55 (23%), Positives = 26/55 (47%)

Query: 13  IPNVEGKAGMAAIVDTENSLDLKQLISGMQKTLPTYARPLFVRTIREVPMTGAYK 67
             + + +  + A   +E  + L+QL     + LPTY  P +   + ++P+T   K
Sbjct: 447 HKDHQEQPYLCAYFVSEKHIPLEQLRQFSSEELPTYMIPSYFIQLDKMPLTSNGK 501

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

 Score =  107 bits (268), Expect = 1e-25
 Identities = 57/355 (16%), Positives = 110/355 (30%), Gaps = 18/355 (5%)

Query: 52  LFVRTIREVPMTGAYKY---TVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYV 107
           L      +     A        ++ +++  ++R+A  F+  G+Q+ D V + +    E+ 
Sbjct: 30  LLRDRAAKYGDRIAITCGNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFF 89

Query: 108 CMWLGLSKIGVVAAFINTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLY 167
            +   L ++G +  F   + R   + +  + AE  A I          +        SL 
Sbjct: 90  EVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYII--------PDAYSGFDYRSLA 141

Query: 168 AAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAV 227
                + P  K +      +E LP     +    + + K SD      + G+TGL K   
Sbjct: 142 RQVQSKLPTLKNIIVAGEAEEFLPLEDLHTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIP 201

Query: 228 MTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQ-CLLGGSTVVIRSKFSA 286
            TH   ++          L    V    LP+ H            L  G  VV+    S 
Sbjct: 202 RTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPSP 261

Query: 287 SNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKR 344
            + +    +   T+   +  +    +       D   S++++   G     +     +  
Sbjct: 262 DDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAV 321

Query: 345 FGLDRICEFYGATEGNANLMNADGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPI 399
           FG      F  A          D +   V        P  P    +   +    +
Sbjct: 322 FGCTLQQVFGMAEGLVNYTRLDDPEEIIVN---TQGKPMSPYDESRVWDDHDRDV 373

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

 Score =  105 bits (263), Expect = 3e-25
 Identities = 82/440 (18%), Positives = 137/440 (31%), Gaps = 57/440 (12%)

Query: 52  LFVRTIREVPMTGAYKY-----TVTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPE 105
           +  R     P   A         +T  ++      +A    + GL+    VA+      +
Sbjct: 7   MLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSAD 66

Query: 106 YVCMWLGLSKIGVVAAFINTNQRQHILIHSIKVAECKAIIY--GAELSEALTEVKDSIPG 163
            V   L L ++G V A +N   +   L   IK  E  A +   G ++++A+ +       
Sbjct: 67  VVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGSGARI 126

Query: 164 ISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLP 223
           I L                   L  +    S   P ED ++  P+      YTSGTTGLP
Sbjct: 127 IFLGD-----------------LVRDGEPYSYGPPIEDPQRE-PAQPAFIFYTSGTTGLP 168

Query: 224 KAA--VMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIR 281
           KAA        +  + +S +        +VV   +PLYH  G    +   L    T V+ 
Sbjct: 169 KAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVV 228

Query: 282 SKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQH--SVKMMIGNG--LRPQV 337
            +F   +  +   +   T           L A       +    S++ +   G  +   V
Sbjct: 229 EEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAV 288

Query: 338 WEPFQKRFGLDRICEFYGATEGNANLMNADGKVGAVGYIPYIAIPFYPVGLIKCDPETSE 397
            E   +          YG TE   +L     K G           F  V +++      E
Sbjct: 289 LETVHQHLP-GEKVNIYGTTEAMNSLYMRQPKTGTEMAPG----FFSEVRIVRIGGGVDE 343

Query: 398 PIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNGYADKKASEKKILRNVYSHGDAAFNT 457
            +               G    +I  +   +        +A+ +K+    Y   D A  T
Sbjct: 344 IV-------------ANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWT 390

Query: 458 GDILIKDKFQYFYFKDRTGD 477
            +              R  D
Sbjct: 391 PE-------GTVRILGRVDD 403

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	479
d1pg4a_	643	Acetyl-CoA synthetase {Salmonella enterica [TaxId:	100.0
d1ry2a_	640	Acetyl-CoA synthetase {Baker's yeast (Saccharomyce	100.0
d1lcia_	541	Luciferase {Firefly (Photinus pyralis) [TaxId: 705	100.0
d1v25a_	534	Long chain fatty acid-CoA ligase TT0168 {Thermus t	100.0
d1amua_	514	Phenylalanine activating domain of gramicidin synt	100.0
d1mdba_	536	Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil	100.0
d3cw9a1	503	4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId	100.0
d1lcia_	541	Luciferase {Firefly (Photinus pyralis) [TaxId: 705	84.41

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

Probab=100.00  E-value=1.5e-60  Score=490.87  Aligned_cols=408  Identities=18%  Similarity=0.228  Sum_probs=320.3

Q ss_pred             ccchhHHHHHHHhhcCCCccccEEE---------Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhh
Q psy8225          45 LPTYARPLFVRTIREVPMTGAYKYT---------VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLS  114 (479)
Q Consensus        45 ~~~~l~~~l~~~~~~~p~~~a~~~~---------~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~  114 (479)
                      .-|+..++|+++++.+||++|+++.         +|| ||.+++.++|++|+++|+++||+|+++++|++++++++|||+
T Consensus        70 ~~N~~~n~ldrh~~~~~d~~Ali~~~~~~~~~~~~TY~eL~~~v~~~A~~L~~~Gv~~Gd~V~i~~~n~~e~iv~~lA~~  149 (643)
T d1pg4a_          70 TLNLAANCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACA  149 (643)
T ss_dssp             EECHHHHHTGGGHHHHTTSEEEEEECSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHhCCCCEEEEEEecCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecccchHHHHHHHHHH
Confidence            3366788999999999999999975         999 999999999999999999999999999999999999999999


Q ss_pred             hcCceeeeecCCcchHHHHHHHHhccceEEEeChhh---------HHHHHHhhcc--CCcce-EEecCCCCCCCccCCCc
Q psy8225         115 KIGVVAAFINTNQRQHILIHSIKVAECKAIIYGAEL---------SEALTEVKDS--IPGIS-LYAAGTRRKPQAKVLPS  182 (479)
Q Consensus       115 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~  182 (479)
                      ++|++++|+++.++.+++.+++++++++++|+++..         ..........  .+.+. +++...... .......
T Consensus       150 ~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~-~~~~~~~  228 (643)
T d1pg4a_         150 RIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGS-DIDWQEG  228 (643)
T ss_dssp             HHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCC-CCCCCBT
T ss_pred             HhCeEEEecCCCCCHHHHHHHHHhcCCCEEEEcchhhhhccccchhhhHHHHHhccccccceEEEEeccCCc-ccccccc
Confidence            999999999999999999999999999999986532         1222222221  22222 333222111 0000011


Q ss_pred             -cccccccCCcCCCCCCcccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhh-hhhhhcCCCCCCeEEEeccchh
Q psy8225         183 -TTLLDEELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAI-SGRYQTGLTSDDVVYTTLPLYH  260 (479)
Q Consensus       183 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~-~~~~~~~~~~~d~~~~~~pl~h  260 (479)
                       ...+............   ......+++++|+|||||||.||||+++|++++.... .....+++.++|++++.+|++|
T Consensus       229 ~~~~~~~~~~~~~~~~~---~~~~~~dd~a~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~  305 (643)
T d1pg4a_         229 RDLWWRDLIEKASPEHQ---PEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGW  305 (643)
T ss_dssp             TEEEHHHHHTTSCSCCC---CCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECSCTTS
T ss_pred             cchhhhhhhcccCcccC---CCCCCCCCeEEEEeCCCcccCCCEEEEccHHHHHHHHHHHHHhhCCCCCCEEEEeCChHH
Confidence             1111122221111111   1345678999999999999999999999999765544 4455678899999999999999


Q ss_pred             hhhhHHHHHHHHhcCceEEecCC----CChhHHHHHHHHhcccEEEEehHHHHHHhcCCCC--CCCCCCceeEEE--ecC
Q psy8225         261 TAGGLLGIGQCLLGGSTVVIRSK----FSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEK--PEDTQHSVKMMI--GNG  332 (479)
Q Consensus       261 ~~g~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~--~~~~l~~lr~~~--G~~  332 (479)
                      .+|+.+.++.++..|+++++.+.    +++..+++.++++++|++.++|++++.|++....  ...++++||.+.  |++
T Consensus       306 ~~g~~~~l~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~dl~sLr~i~~~G~p  385 (643)
T d1pg4a_         306 VTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEP  385 (643)
T ss_dssp             HHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESSC
T ss_pred             HHHHHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHHHHHHCCcEEEehHHHHHHHHhCcchhccccCCCceEEEEEEeCC
Confidence            99987778889999999998653    4889999999999999999999999999877543  345689999887  899


Q ss_pred             CChhhHHHHHHHhCc--ceeeeeccccccCcccccC-----CCCCCcccccCccccCCCceeeEEeCCCCCCccccCCCc
Q psy8225         333 LRPQVWEPFQKRFGL--DRICEFYGATEGNANLMNA-----DGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGL  405 (479)
Q Consensus       333 l~~~~~~~~~~~~~~--~~v~~~YG~tE~~~~~~~~-----~~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~  405 (479)
                      +++++++++.+.+|.  .++++.||+||+|+.+...     +.+++++|+|++      +++++++|++ |+        
T Consensus       386 l~~~~~~~~~~~~g~~~~~i~~~yG~TE~g~~~~~~~~~~~~~~~gs~G~p~~------g~~v~ivd~~-g~--------  450 (643)
T d1pg4a_         386 INPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFF------GVQPALVDNE-GH--------  450 (643)
T ss_dssp             CCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBCCCTTTCCBCTTCCBSBCT------TCCEEEECTT-CC--------
T ss_pred             CCHHHHHHHHHHhCCCCceEEEeechhhccceEEecCCCccCCCCCccccccC------CCEEEEECCC-CC--------
Confidence            999999999999963  2699999999998765532     245677887765      8999999965 44        


Q ss_pred             cccccCCCCceEEEEeecCCcccccccccCcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         406 CIPCKAEEPGILIGMIKESRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       406 ~~~~~~~~~Gel~v~~~~~~~~~~~~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                        +++.|+.|||++++.  .| +++.|||++++.+.+.+   +...+|||+|||+|++|+||+|+|+||+||++
T Consensus       451 --~~~~g~~Gel~v~~~--~p-~~~~~~~~~~~~~~~~~---~~~~~g~~~TGDl~~~d~dG~l~i~GR~dd~i  516 (643)
T d1pg4a_         451 --PQEGATEGNLVITDS--WP-GQARTLFGDHERFEQTY---FSTFKNMYFSGDGARRDEDGYYWITGRVDDVL  516 (643)
T ss_dssp             --BCCSSEEEEEEECSC--CT-TCCCEETTCHHHHHHHH---HSSSTTSEEEEEEEEECTTSCEEEEEESSSEE
T ss_pred             --CCCCCceEEEEEecC--CC-cccccccCChhhchhhh---cccCCCeEEcCCEEEECCCceEEEecccccEE
Confidence              568899999999822  24 78899999987665543   33458999999999999999999999999974

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=9.7e-59  Score=479.61  Aligned_cols=409  Identities=20%  Similarity=0.276  Sum_probs=319.7

Q ss_pred             chhHHHHHHHhhcCCCccccEEE---------Eeh-hhHHHHHHHHHHHH-HcCCCCCCEEEEEcCCchHHHHHHHHhhh
Q psy8225          47 TYARPLFVRTIREVPMTGAYKYT---------VTF-QVEDHSNRIANFFK-SKGLQRGDAVALFMEGQPEYVCMWLGLSK  115 (479)
Q Consensus        47 ~~l~~~l~~~~~~~p~~~a~~~~---------~Ty-~l~~~~~~la~~L~-~~gi~~gd~V~i~~~n~~e~~~~~lA~~~  115 (479)
                      |+..++|+++++++||++|+++.         +|| ||.++++++|++|+ ++|+++||+|+++++|++++++++|||++
T Consensus        59 N~~~n~ldr~a~~~pd~~Ali~~~~~~g~~~~~Ty~eL~~~v~~~A~~L~~~~Gv~~Gd~V~i~~~n~~e~~~~~lA~~~  138 (640)
T d1ry2a_          59 NACYNCVDRHALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISR  138 (640)
T ss_dssp             CHHHHHTHHHHTTCTTSEEEEEECSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHhhCCCCEEEEEEecCCCCeeEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHhcc
Confidence            66789999999999999999974         999 99999999999997 57999999999999999999999999999


Q ss_pred             cCceeeeecCCcchHHHHHHHHhccceEEEeChhh---------HHHHHHhhccCCcceEE-ecCCCCCCCccCC-Cccc
Q psy8225         116 IGVVAAFINTNQRQHILIHSIKVAECKAIIYGAEL---------SEALTEVKDSIPGISLY-AAGTRRKPQAKVL-PSTT  184 (479)
Q Consensus       116 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~  184 (479)
                      +|++++|+++.++.+++.++++++++++++++...         ...+.........+... ............. ....
T Consensus       139 ~Gav~vpi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (640)
T d1ry2a_         139 IGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVAFHAPRDL  218 (640)
T ss_dssp             TTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSCCCCSSSEE
T ss_pred             CceEeecCCCCCCHHHHHHHHHhhhccccccchhhhhccchhhhHHHHHhhhhhhcccceeeeecccccccccccccccc
Confidence            99999999999999999999999999999987532         22333333333322221 1111111000000 0000


Q ss_pred             cccccCCcCCCCCCcccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhh-hhhcCCCCCCeEEEeccchhhhh
Q psy8225         185 LLDEELPEVSAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISG-RYQTGLTSDDVVYTTLPLYHTAG  263 (479)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~-~~~~~~~~~d~~~~~~pl~h~~g  263 (479)
                      ............   .......++++++|+|||||||.||||+++|++++...... ...+++..+|++++.+|++|.+|
T Consensus       219 ~~~~~~~~~~~~---~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~h~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g  295 (640)
T d1ry2a_         219 DWATEKKKYKTY---YPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITG  295 (640)
T ss_dssp             EHHHHHTTSCSC---CCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECSCTTSHHH
T ss_pred             cccccccccccc---cccCCcccccCCEEEECCCCCCCCcceeeccccHHHHHHHHHHhhcCCCcccceeeccchhhhhh
Confidence            111111111111   11134467889999999999999999999999987765444 34667899999999999999999


Q ss_pred             hHHHHHHHHhcCceEEecCC----CChhHHHHHHHHhcccEEEEehHHHHHHhcCCCC--CCCCCCceeEEE--ecCCCh
Q psy8225         264 GLLGIGQCLLGGSTVVIRSK----FSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEK--PEDTQHSVKMMI--GNGLRP  335 (479)
Q Consensus       264 ~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~--~~~~l~~lr~~~--G~~l~~  335 (479)
                      +.+.++.++..|+++++.+.    +++..+++.|+++++|++.++|++++.|.+....  ...++++||.+.  |+++++
T Consensus       296 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~v~~gG~~l~~  375 (640)
T d1ry2a_         296 HTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAA  375 (640)
T ss_dssp             HHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSSCCCH
T ss_pred             HHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHHHHHhCccEEEcChHHHHHHHhccccccccCCCCceEEEEEecccCcH
Confidence            88888889999998888664    3789999999999999999999999999876543  345689999987  899999


Q ss_pred             hhHHHHHHHhCcc--eeeeeccccccCccccc------CCCCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccc
Q psy8225         336 QVWEPFQKRFGLD--RICEFYGATEGNANLMN------ADGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCI  407 (479)
Q Consensus       336 ~~~~~~~~~~~~~--~v~~~YG~tE~~~~~~~------~~~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~  407 (479)
                      ++.+++.+.+|..  .+++.||+||++..+..      .+.+++++|+|++      +++++++|+++++.+        
T Consensus       376 ~~~~~~~~~~g~~~~~i~~~yg~te~~~~~~~~~~~~~~~~~~gs~G~p~~------g~~~~i~d~~~~~~~--------  441 (640)
T d1ry2a_         376 EVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFF------GIDAVVLDPNTGEEL--------  441 (640)
T ss_dssp             HHHHHHHHTTSCSSSCEEECBCCTTTCSCSEECCTTTCCCCCTTCCCEECT------TCCEEEECSSSTTCE--------
T ss_pred             HHHHHHHHhcCCCcceEEeeecccccccccccccCCCcCCCCCcccccccC------CceEEEEeCCCCccc--------
Confidence            9999999999752  68999999999866542      2346678888776      799999998877643        


Q ss_pred             cccCCCCceEEEEeecCCcccccccccCcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         408 PCKAEEPGILIGMIKESRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       408 ~~~~~~~Gel~v~~~~~~~~~~~~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                       .+.++.|||++++.  +| +++.|||++++.+.+.+   +.+.+|||+|||+|++|+||+|+|+||+||++
T Consensus       442 -~~~~~~Gel~i~~~--~p-~~~~gy~~~~e~t~~~~---~~~~~gw~~TGDlg~~d~dG~l~i~GR~dd~I  506 (640)
T d1ry2a_         442 -NTSHAEGVLAVKAA--WP-SFARTIWKNHDRYLDTY---LNPYPGYYFTGDGAAKDKDGYIWILGRVDDVV  506 (640)
T ss_dssp             -ECSSCEEEEEESSC--CT-TSCCEETTCHHHHHHHH---TSSSTTSEEEEEEEEECTTCCEEECSCTTSCB
T ss_pred             -CCCCceEEEEEEec--CC-CcccccccCHHHHHhhh---ccCCCCeEEcCCceeECCCCCEEEEEcCCCEE
Confidence             24456799998833  46 89999999987766544   33457999999999999999999999999985

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

Probab=100.00  E-value=1.8e-58  Score=468.98  Aligned_cols=402  Identities=20%  Similarity=0.249  Sum_probs=317.7

Q ss_pred             chhHHHHHHHhhcC---CCccccEEE-----Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcC
Q psy8225          47 TYARPLFVRTIREV---PMTGAYKYT-----VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIG  117 (479)
Q Consensus        47 ~~l~~~l~~~~~~~---p~~~a~~~~-----~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G  117 (479)
                      .++.++|.++++++   |+.+|+.+.     +|| ||.+++.++|+.|+++|+++||+|+|+++|++++++++|||+++|
T Consensus        17 ~t~~~~l~~~~~~~~~~P~~~a~~d~~~~~~lTy~el~~~~~~lA~~L~~~Gi~~Gd~Vai~~~ns~e~~v~~lA~~~~G   96 (541)
T d1lcia_          17 GTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIG   96 (541)
T ss_dssp             SCHHHHHHHHHHHHHTSTTCEEEEETTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCSSTHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHhhCCCCCeEEEEeCCCCeEeeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHHHHHHHHHHHhC
Confidence            67888898888887   555566553     999 999999999999999999999999999999999999999999999


Q ss_pred             ceeeeecCCcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCCcceEEecCCCCCCCccCCCcccccccc----CCcC
Q psy8225         118 VVAAFINTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEE----LPEV  193 (479)
Q Consensus       118 ~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~  193 (479)
                      ++++|+++.++.+++.++|+.++++++|++++..+.+.++...++..+.+...+.....    .....+...    ....
T Consensus        97 ~i~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~  172 (541)
T d1lcia_          97 VAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDY----QGFQSMYTFVTSHLPPG  172 (541)
T ss_dssp             CEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTTCCEEEETTCSSCB----TTBEEHHHHHHHHSCTT
T ss_pred             eEEEecCCCCCHHHHHHHHHhccceEEeeeccccccchhccccccccceeeeecCCccc----cccchhhhhhhhhcccc
Confidence            99999999999999999999999999999999888888888878765544333221110    111111111    1111


Q ss_pred             CCCCCcccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhh---hcCCCCCCeEEEeccchhhhhhHHHHHH
Q psy8225         194 SAKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRY---QTGLTSDDVVYTTLPLYHTAGGLLGIGQ  270 (479)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~---~~~~~~~d~~~~~~pl~h~~g~~~~~~~  270 (479)
                      .............++++++|+|||||||.||+|+++|++++........   ......++++++.+|++|..+... .+.
T Consensus       173 ~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~  251 (541)
T d1lcia_         173 FNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFT-TLG  251 (541)
T ss_dssp             CCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHH-HHH
T ss_pred             ccccccCccccCCCCceEEEEeeccccccccccccccchhhhhhhhhhhhcccccccccccccccccccccccccc-ccc
Confidence            1111111113445678999999999999999999999999876655443   335678899999999999988644 455


Q ss_pred             HHhcCceEEecCCCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEE--ecCCChhhHHHHHHHhCcc
Q psy8225         271 CLLGGSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLD  348 (479)
Q Consensus       271 ~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~--G~~l~~~~~~~~~~~~~~~  348 (479)
                      .+..++.++.....+....+..+.++++|.+..+|..+..+.+........++++|.+.  |+++++++.+++.+.++..
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~~~~~~~~l~~v~~gG~~~~~~~~~~~~~~~~~~  331 (541)
T d1lcia_         252 YLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLP  331 (541)
T ss_dssp             HHHHTCEEEECSSCCHHHHHHHHHHTTCSEEECCHHHHHHHHHCSCGGGSCCTTCCEEECTTCCCCHHHHHHHHHHTTCS
T ss_pred             ccccccccccccccccchhHHHHhhhhccccccCccccccccccccccccccccceEEEecccccccccccccccccCCc
Confidence            66778888888888999999999999999999999999999988877777789999888  7889999999999999876


Q ss_pred             eeeeeccccccCccccc---CCCCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCC
Q psy8225         349 RICEFYGATEGNANLMN---ADGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESR  425 (479)
Q Consensus       349 ~v~~~YG~tE~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~  425 (479)
                      .+++.||+||+++.++.   ....++++|+|+|      +++++++|+++++          +|+.|+.|||+++    |
T Consensus       332 ~~~~~YG~TE~~~~~~~~~~~~~~~~svG~p~~------~~~~~i~d~d~~~----------~~~~g~~Gel~v~----g  391 (541)
T d1lcia_         332 GIRQGYGLTETTSAILITPEGDDKPGAVGKVVP------FFEAKVVDLDTGK----------TLGVNQRGELCVR----G  391 (541)
T ss_dssp             CCBCEECCGGGSSCSEECCCC---CCCCBEECT------TCEEEEECTTTCC----------BCCTTCCEEEEEE----S
T ss_pred             eeeecCCccccCceEEecCcccCCCCccccccC------CCEEEEEECCCCc----------CCCCCCeEEEEEc----c
Confidence            79999999999876653   2345678888776      8999999998887          6789999999998    8


Q ss_pred             cccccccccCcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         426 AESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       426 ~~~~~~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                      + +++.||+++++.+...+.     ++|||+|||+|++|+||++++.||.||++
T Consensus       392 ~-~~~~gY~~~~~~~~~~~~-----~~~~~~TGDl~~~~~~G~~~~~GR~~d~i  439 (541)
T d1lcia_         392 P-MIMSGYVNNPEATNALID-----KDGWLHSGDIAYWDEDEHFFIVDRLKSLI  439 (541)
T ss_dssp             T-TSCSEETTBHHHHHHHBC-----TTSCEEEEEEEEECTTCCEEEC-----CE
T ss_pred             C-ccCCeeCCChhhhhhccc-----CCccccCCCeeEEcCCeEEEEeeeecCEE
Confidence            8 899999999877765543     48999999999999999999999999974

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=1e-57  Score=462.62  Aligned_cols=396  Identities=19%  Similarity=0.246  Sum_probs=320.9

Q ss_pred             cchhHHHHHHHhhcCCCccccEEE-------Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcC
Q psy8225          46 PTYARPLFVRTIREVPMTGAYKYT-------VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIG  117 (479)
Q Consensus        46 ~~~l~~~l~~~~~~~p~~~a~~~~-------~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G  117 (479)
                      ..+|.++|+++++++||++|+++.       +|| ||.+++.++|++|.++|+++||+|+|+++|++++++++|||+++|
T Consensus        10 ~~~l~~~l~~~a~~~pd~~av~~~~~g~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G   89 (534)
T d1v25a_          10 ELNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMG   89 (534)
T ss_dssp             CCCTHHHHHHHHHHSTTCEEEEECTTSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHHHcCCCeEEEEecCCceEEEcHHHHHHHHHHHHHHHHHCCcCCCCEEEEEeCCCHHHHHHHHHHHHhC
Confidence            456999999999999999999884       899 999999999999999999999999999999999999999999999


Q ss_pred             ceeeeecCCcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCCcceEEecCCCCCCCccCCCccccccccCCcCCCCC
Q psy8225         118 VVAAFINTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKS  197 (479)
Q Consensus       118 ~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (479)
                      ++++|++|.++.+++.++++.+++++++++.........+....+.+............     ........  ....  
T Consensus        90 ~v~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~--~~~~--  160 (534)
T d1v25a_          90 AVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPE-----GYLAYEEA--LGEE--  160 (534)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCSSCCEEEESSSCCCT-----TCEEHHHH--CCSC--
T ss_pred             cEEEecCCCCCHHHHHHHHHhhccccccccchhhhhHHHHhhcccccceeEEeeccccc-----cccccccc--cccc--
Confidence            99999999999999999999999999999999888888887777655544433222100     00000000  0000  


Q ss_pred             CcccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhh--hhhhcCCCCCCeEEEeccchhhhhhHHHHHHHHhcC
Q psy8225         198 PTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAIS--GRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGG  275 (479)
Q Consensus       198 ~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~--~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G  275 (479)
                        .......++++++++|||||||.||||+++|.+++..+..  .........++++++.+|++|.+++...+...+..|
T Consensus       161 --~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~~~g~  238 (534)
T d1v25a_         161 --ADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGA  238 (534)
T ss_dssp             --CCCCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHHTHHHHHHHHTC
T ss_pred             --ccccccccCCcEEEEEecCCCCCccccccccchhhhhhhhhhhhcccccccccccccccchhhhccccccceeeeecc
Confidence              1113456788999999999999999999999999865543  334455778899999999999999877666555555


Q ss_pred             ceEEecCCCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEE--ecCCChhhHHHHHHHhCcceeeee
Q psy8225         276 STVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEF  353 (479)
Q Consensus       276 ~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~--G~~l~~~~~~~~~~~~~~~~v~~~  353 (479)
                      .++++.+.+++..+...++++++|.+.++|+++..+..........+++||.++  |++++++..++++ .++. ++++.
T Consensus       239 ~~v~~~~~~~~~~~~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~-~~~~-~i~~~  316 (534)
T d1v25a_         239 KQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGSAAPRSLIARFE-RMGV-EVRQG  316 (534)
T ss_dssp             EEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCCCSSCCEEEECSSCCCHHHHHHHH-HTTC-EEEEE
T ss_pred             eeeeccccccccccchhhhhccccccccCchhhhhhhhhhccccccccceeEEEEecCCCCHHHHHHHH-HhCC-eeeee
Confidence            555556678999999999999999999999999998877665566789999877  8889999998887 4577 89999


Q ss_pred             ccccccCcccccCC--------------CCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEE
Q psy8225         354 YGATEGNANLMNAD--------------GKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIG  419 (479)
Q Consensus       354 YG~tE~~~~~~~~~--------------~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v  419 (479)
                      ||+||++..+....              ..++++|+|+|      +++++++|+++ +.+        +...|+.|||++
T Consensus       317 yG~te~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~------g~~~~i~d~~~-~~~--------~~~~~~~Gel~v  381 (534)
T d1v25a_         317 YGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIP------LVRLRVADEEG-RPV--------PKDGKALGEVQL  381 (534)
T ss_dssp             EECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECT------TCEEEEECTTS-CBC--------CSSSCCCEEEEE
T ss_pred             ccccccccceeecccCccccccCccccccccccceeccC------CcEEEEECCCC-CCC--------CCCCCeeEEEEE
Confidence            99999987765321              12345666554      89999999663 322        445578999999


Q ss_pred             EeecCCcccccccccCcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         420 MIKESRAESHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       420 ~~~~~~~~~~~~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                      +    |+ +++.||+++++.+...+.     .+|||+|||+|++|+||+|++.||+||++
T Consensus       382 ~----g~-~v~~gY~~~~~~t~~~~~-----~dg~~~TGDlg~~~~~G~l~~~GR~~~~i  431 (534)
T d1v25a_         382 K----GP-WITGGYYGNEEATRSALT-----PDGFFRTGDIAVWDEEGYVEIKDRLKDLI  431 (534)
T ss_dssp             E----ST-TSBSSCBTCHHHHHTTBC-----TTSCEEEEEEEEECTTCCEEEEEESSCEE
T ss_pred             c----CC-cccceecCChhhhhhhcc-----cCCCCccCceeEECCCccEEEecccccEE
Confidence            8    88 999999999887776553     48999999999999999999999999974

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

Probab=100.00  E-value=6.3e-54  Score=432.73  Aligned_cols=385  Identities=17%  Similarity=0.177  Sum_probs=301.7

Q ss_pred             chhHHHHHHHhhcCCCccccEEE---Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCceeee
Q psy8225          47 TYARPLFVRTIREVPMTGAYKYT---VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVAAF  122 (479)
Q Consensus        47 ~~l~~~l~~~~~~~p~~~a~~~~---~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~v~  122 (479)
                      .||.++|+++++++||++|+++.   +|| ||.++++++|++|+++|+++||+|+++++|+++|++++|||+++|++++|
T Consensus        23 ~tl~~l~~~~a~~~Pd~~Al~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~~~G~v~v~  102 (514)
T d1amua_          23 KTIHQLFEEQVSKRPNNVAIVCENEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYVP  102 (514)
T ss_dssp             CCHHHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEE
T ss_pred             CcHHHHHHHHHHhCCCCeEEEECCeeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHHHHHHHHHHHhCcEEEE
Confidence            68999999999999999999998   999 99999999999999999999999999999999999999999999999999


Q ss_pred             ecCCcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCCcceEEecCCCCCCCccCCCccccccccCCcCCCCCCcccc
Q psy8225         123 INTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTEDI  202 (479)
Q Consensus       123 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (479)
                      +++.++.+++.++++.++++++|++....+.+.....   .........                 ...........  .
T Consensus       103 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~---~~~~~~~~~-----------------~~~~~~~~~~~--~  160 (514)
T d1amua_         103 IDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQF---NGQVEIFEE-----------------DTIKIREGTNL--H  160 (514)
T ss_dssp             CCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSCC---CSEEEECCC-----------------STTTTSCCSCC--C
T ss_pred             eCCCCCHHHHHHHHhccCCcEEEEehhhhhhhhhhcc---ccccccccc-----------------ccccccccccC--C
Confidence            9999999999999999999999999887665443221   111111110                 00000011110  1


Q ss_pred             cCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcCCCCCCeEEEeccchhhhhhHHHHHHHHhcCceEEecC
Q psy8225         203 KKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRS  282 (479)
Q Consensus       203 ~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G~~~v~~~  282 (479)
                      ....++++++|+|||||||.||+|+++|.++...+......+....++++++.+|++|..++ ..++.++..|+++++..
T Consensus       161 ~p~~~~d~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~~~~~~~~~  239 (514)
T d1amua_         161 VPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASV-WEMFMALLTGASLYIIL  239 (514)
T ss_dssp             CCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHH-HHHHHHHTTTCEEEECC
T ss_pred             CCCCcccceEEEEccCCCCCcccccccccccccccccccccccccccccccceecccccccc-ccccccccccccccccc
Confidence            33457889999999999999999999999999999999989999999999999999999886 55667888888888766


Q ss_pred             C---CChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEE--ecCCChhhHHHHHHHhCcceeeeecccc
Q psy8225         283 K---FSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFYGAT  357 (479)
Q Consensus       283 ~---~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~--G~~l~~~~~~~~~~~~~~~~v~~~YG~t  357 (479)
                      .   .+....++.+..+.++.+..+|......      ....+.+++.+.  |+++++++.+++.+  +. .+++.||+|
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~G~~~~~~~~~~~~~--~~-~~~~~yG~t  310 (514)
T d1amua_         240 KDTINDFVKFEQYINQKEITVITLPPTYVVHL------DPERILSIQTLITAGSATSPSLVNKWKE--KV-TYINAYGPT  310 (514)
T ss_dssp             HHHHTCHHHHHHHHHHTTCCEEEECHHHHTTS------CTTTCCSCSEEEEESSCCCHHHHHHHTT--TS-EEEEEECCG
T ss_pred             cccccchhhhhhhhhhhhcccccceeeecccc------cccccccccEEEEecccCCHHHhhhhcc--ce-eEEEeeccc
Confidence            3   4667788999999999999998764421      223567777766  88899999888765  44 899999999


Q ss_pred             ccCcccccCCCCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCcccccccccCcc
Q psy8225         358 EGNANLMNADGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNGYADKK  437 (479)
Q Consensus       358 E~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~gY~~~~  437 (479)
                      |++.++..........+...+.+.+.++..+.+.|++ ++          +++.|+.|||+++    || +++.||++++
T Consensus       311 E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~-~~----------~~~~g~~GEl~v~----~~-~~~~gY~~~~  374 (514)
T d1amua_         311 ETTICATTWVATKETIGHSVPIGAPIQNTQIYIVDEN-LQ----------LKSVGEAGELCIG----GE-GLARGYWKRP  374 (514)
T ss_dssp             GGSSCSEEEECCSSCCCSSCCCBEECTTEEEEEECTT-SC----------BCCTTCEEEEEEE----ET-TCCCEETTCH
T ss_pred             cCceeeeeccccccccCcccccccceeeeeEeeeccc-ce----------ecCCCCeeEEEEc----cC-cccccccccc
Confidence            9998765432222222222333444447888888844 44          5688999999998    77 8999999987


Q ss_pred             hhHHHHH-hhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         438 ASEKKIL-RNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       438 ~~~~~~~-~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                      ..+...| .+.+.+++|||+|||+|++|+||+|+|+||+||++
T Consensus       375 ~~~~~~~~~~~~~~~~~~~~TGD~g~~d~~G~l~i~GR~~d~i  417 (514)
T d1amua_         375 ELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQV  417 (514)
T ss_dssp             HHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEE
T ss_pred             cccceeeEeccccCCCceEEECCEEEECCCCcEEEEecccCEE
Confidence            7666554 33455678999999999999999999999999974

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=2.9e-53  Score=429.98  Aligned_cols=396  Identities=18%  Similarity=0.203  Sum_probs=315.4

Q ss_pred             cccchhHHHHHHHhhcCCCccccEEE---Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCce
Q psy8225          44 TLPTYARPLFVRTIREVPMTGAYKYT---VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVV  119 (479)
Q Consensus        44 ~~~~~l~~~l~~~~~~~p~~~a~~~~---~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~  119 (479)
                      +.+.||.++|+++++++||++|+++.   +|| ||.++++++|++|+++|+++||+|+++++|++++++++|||+++|++
T Consensus        22 ~~~~tl~~~l~~~a~~~pd~~Al~~~~~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~~~~~v~~lA~~~~G~i  101 (536)
T d1mdba_          22 WAGETFGDLLRDRAAKYGDRIAITCGNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGAL  101 (536)
T ss_dssp             SCSCCHHHHHHHHHHHHTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHHHTCE
T ss_pred             CCCCCHHHHHHHHHHHCCCCeEEEECCEeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHHHHHHHHHHHhCcE
Confidence            34578999999999999999999998   999 99999999999999999999999999999999999999999999999


Q ss_pred             eeeecCCcchHHHHHHHHhccceEEEeChhhHH-----HHHHhhccCCcceEEecCCCCCCCccCCCccccccccCCcCC
Q psy8225         120 AAFINTNQRQHILIHSIKVAECKAIIYGAELSE-----ALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVS  194 (479)
Q Consensus       120 ~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (479)
                      ++|++|.++.+++.++++.+++++++++.....     .........+.+.........       .....+++..... 
T Consensus       102 ~vpl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~-  173 (536)
T d1mdba_         102 PVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEA-------EEFLPLEDLHTEP-  173 (536)
T ss_dssp             EEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCC-------TTSEEGGGCCCCC-
T ss_pred             EEecCCCCCHHHHHHHHHhhccceEeccchhhhhhhhhhhhhhhhccccccceeeeecc-------ccccchhhcccCC-
Confidence            999999999999999999999999998753221     111111222222211111100       1112222221111 


Q ss_pred             CCCCcccccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcCCCCCCeEEEeccchhhhhhHHHHHH-HHh
Q psy8225         195 AKSPTEDIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTGLTSDDVVYTTLPLYHTAGGLLGIGQ-CLL  273 (479)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~-~l~  273 (479)
                           .......++++++|+|||||||.||+|++||.++...+......+.+..++++++..|++|.+++...++. .+.
T Consensus       174 -----~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~l~~~~~~~~~~  248 (536)
T d1mdba_         174 -----VKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLY  248 (536)
T ss_dssp             -----CCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHH
T ss_pred             -----cCCCccCccchHHhhhcccccccceecccccccccccccccccccccccccccccccccccccceeecccccccc
Confidence                 11145578899999999999999999999999999999988888999999999999999999987544443 444


Q ss_pred             cCceEEecCCCChhHHHHHHHHhcccEEEEehHHHHHHhcCCCCCCCCCCceeEEE--ecCCChhhHHHHHHHhCcceee
Q psy8225         274 GGSTVVIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVPEKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRIC  351 (479)
Q Consensus       274 ~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~l~~lr~~~--G~~l~~~~~~~~~~~~~~~~v~  351 (479)
                      .|.+++..+.+++..++..+++++++.+..+|..+..+..........+++++.+.  |++++++..+++.+.+|. ...
T Consensus       249 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~~~~~~~~~~~~~~~-~~~  327 (536)
T d1mdba_         249 AGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVFGC-TLQ  327 (536)
T ss_dssp             TTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSCCCHHHHTTHHHHTCS-EEE
T ss_pred             ccccccccCCCCHHHHHHHHhhhccccccccchhhhhhhhhccccccccCcceeEEEeccccccccccchhhccCc-eee
Confidence            57888888889999999999999999999999999887776655556678888776  788999999999999999 888


Q ss_pred             eeccccccCcccccCC----CCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCcc
Q psy8225         352 EFYGATEGNANLMNAD----GKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAE  427 (479)
Q Consensus       352 ~~YG~tE~~~~~~~~~----~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~  427 (479)
                      ..||.+|.+..+....    ...+++|.|++      +.....++.++++          +++.++.|||+++    |+ 
T Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~------~~~~~~v~~~~g~----------~~~~~~~Gel~v~----g~-  386 (536)
T d1mdba_         328 QVFGMAEGLVNYTRLDDPEEIIVNTQGKPMS------PYDESRVWDDHDR----------DVKPGETGHLLTR----GP-  386 (536)
T ss_dssp             EEEECTTSCEEECCTTSCHHHHHHCCCEESS------TTCEEEEECTTSC----------BCCTTCCEEEEEE----CT-
T ss_pred             eccccccccccccccccccccccCCcccCCC------CcceEEEEcCCCC----------eecccccceeecC----CC-
Confidence            8898888775554332    23355666543      3444445445555          5689999999998    88 


Q ss_pred             cccccccCcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         428 SHFNGYADKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       428 ~~~~gY~~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                      .++.||++++..+...+.     .+|||+|||+|++|+||+|++.||+||++
T Consensus       387 ~~~~gY~~~~~~~~~~~~-----~~~~~~tGD~~~~~~dG~l~~~GR~~d~i  433 (536)
T d1mdba_         387 YTIRGYYKAEEHNAASFT-----EDGFYRTGDIVRLTRDGYIVVEGRAKDQI  433 (536)
T ss_dssp             TSCSSCTTCHHHHHHHBC-----TTSCEEEEEEEEECTTSCEEEEEEGGGCE
T ss_pred             cccccccccccccccccc-----ccCccccCccccccCCCceecCCCcceEE
Confidence            899999998877665543     37999999999999999999999999974

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

Probab=100.00  E-value=5.9e-49  Score=394.60  Aligned_cols=392  Identities=21%  Similarity=0.225  Sum_probs=304.9

Q ss_pred             chhHHHHHHHhhcCCCccccEEE-----Eeh-hhHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHhhhcCcee
Q psy8225          47 TYARPLFVRTIREVPMTGAYKYT-----VTF-QVEDHSNRIANFFKSKGLQRGDAVALFMEGQPEYVCMWLGLSKIGVVA  120 (479)
Q Consensus        47 ~~l~~~l~~~~~~~p~~~a~~~~-----~Ty-~l~~~~~~la~~L~~~gi~~gd~V~i~~~n~~e~~~~~lA~~~~G~~~  120 (479)
                      .|+.++|+++++++||++|+++.     +|| ||.+++.++|++|+++|+++||+|+++++|++++++++|||+++|+++
T Consensus         2 ~ti~~~l~~~a~~~pd~~al~~~~~~~~~Ty~el~~~~~~~a~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~   81 (503)
T d3cw9a1           2 QTVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVP   81 (503)
T ss_dssp             CCHHHHHHHHHHHSTTSEEEEEGGGTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHHTCEE
T ss_pred             CCHHHHHHHHHHhCCCCeEEEECCCCcEEeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHHHHHHHHHHHhCcEE
Confidence            47899999999999999999986     999 999999999999999999999999999999999999999999999999


Q ss_pred             eeecCCcchHHHHHHHHhccceEEEeChhhHHHHHHhhccCCcceEEecCCCCCCCccCCCccccccccCCcCCCCCCcc
Q psy8225         121 AFINTNQRQHILIHSIKVAECKAIIYGAELSEALTEVKDSIPGISLYAAGTRRKPQAKVLPSTTLLDEELPEVSAKSPTE  200 (479)
Q Consensus       121 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (479)
                      +|++|.++++++.+++++++++++|++..... ...........+++.+.+...          .. ........    .
T Consensus        82 vpi~~~~~~~~i~~~l~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~i~~~~~~~----------~~-~~~~~~~~----~  145 (503)
T d3cw9a1          82 ALLNPRLKSAELAELIKRGEMTAAVIAVGRQV-ADAIFQSGSGARIIFLGDLVR----------DG-EPYSYGPP----I  145 (503)
T ss_dssp             EEECTTSCHHHHHHHHHHTTCSEEEESSCHHH-HHHHHHTTCCCEEEEHHHHEE----------TT-EECCCSCC----C
T ss_pred             EEeCCCCCHHHHHHHHHhcCCcEEEeecchHH-HHHHhhhccccccccchhhhh----------hh-cccccCCc----c
Confidence            99999999999999999999999999865322 222233333444444332110          00 00000011    1


Q ss_pred             cccCCCCCCcEEEEEccCCCCCcceEEeehHHHHHHhhhhhhhcC--CCCCCeEEEeccchhhhhhHHHHHHHHhcCceE
Q psy8225         201 DIKKNKPSDKLAYIYTSGTTGLPKAAVMTHVRAMFMAISGRYQTG--LTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTV  278 (479)
Q Consensus       201 ~~~~~~~~~~~~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~--~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G~~~  278 (479)
                      ......++++++++|||||||.||+|+++|.++...+......+.  ....+++++.+|++|..+.....+.+...++.+
T Consensus       146 ~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  225 (503)
T d3cw9a1         146 EDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTY  225 (503)
T ss_dssp             CCCCCCTTSEEEEEEECCSSSSCEEEEEEGGGHHHHHHHHHHTSCCCSSTTCEEEECSCTTSHHHHHTTHHHHHHTTCEE
T ss_pred             ccccchhhhhhhhcccccccccccccccccchhhhhhhhccccccccccccccccccCcccccccccccccccccccccc
Confidence            114456789999999999999999999999999988877766543  456689999999999888777777788888899


Q ss_pred             EecCCCChhHHHHHHHHhcccEEEEehHHHHHHhcCC--CCCCCCCCceeEEE--ecCCChhhHHHHHHHhCcceeeeec
Q psy8225         279 VIRSKFSASNFWKDCIKYNCTVAQYIGEMCRYLLAVP--EKPEDTQHSVKMMI--GNGLRPQVWEPFQKRFGLDRICEFY  354 (479)
Q Consensus       279 v~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~--~~~~~~l~~lr~~~--G~~l~~~~~~~~~~~~~~~~v~~~Y  354 (479)
                      ++.+.+++..++..+.+++++.+..+|..+..+....  .......++||.++  |+++++++..++.+.++. .+.+.|
T Consensus       226 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~i~~gG~~~~~~~~~~~~~~~~~-~~~~~y  304 (503)
T d3cw9a1         226 VVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPG-EKVNIY  304 (503)
T ss_dssp             EECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHHHTCTTCCCTTCCEEEECSSCCCHHHHHHHHHHCCS-EEEEEE
T ss_pred             ccccccChHHhhhhhhhceeeccccccccccccccccccccccccccceEEEEeccccccccccccccccccc-cccccc
Confidence            9999999999999999999999999999887655432  22334568899887  899999999999999998 899999


Q ss_pred             cccccCcccccCCCCCCcccccCccccCCCceeeEEeCCCCCCccccCCCccccccCCCCceEEEEeecCCccccccccc
Q psy8225         355 GATEGNANLMNADGKVGAVGYIPYIAIPFYPVGLIKCDPETSEPIRNKDGLCIPCKAEEPGILIGMIKESRAESHFNGYA  434 (479)
Q Consensus       355 G~tE~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~d~~~~~~i~~~~g~~~~~~~~~~Gel~v~~~~~~~~~~~~gY~  434 (479)
                      |++|++..+..........+..   ..+. ...........++          .++.|+.|++.+.    +......+|+
T Consensus       305 g~~e~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~----------~~~~g~~g~~~~~----~~~~~~~~~~  366 (503)
T d3cw9a1         305 GTTEAMNSLYMRQPKTGTEMAP---GFFS-EVRIVRIGGGVDE----------IVANGEEGELIVA----ASDSAFVGYL  366 (503)
T ss_dssp             EETTTEEEEEEESCSSSSEEBC---CTTC-CEEEECTTSCTTC----------BCCTTCCEEEEEE----CCTTSCCCBT
T ss_pred             cccccceeeeeccccccccccc---cccc-cceeeeeecccCc----------ccCCCcccccccc----cccccccccc
Confidence            9999987665332211111111   1111 1222223334344          4578999998877    3336778899


Q ss_pred             CcchhHHHHHhhhccCCCcEEEcCCeeEEecCCcEEEecCCCCCC
Q psy8225         435 DKKASEKKILRNVYSHGDAAFNTGDILIKDKFQYFYFKDRTGDAC  479 (479)
Q Consensus       435 ~~~~~~~~~~~~~~~~~~g~~~TGD~g~~d~dG~l~~~GR~~d~~  479 (479)
                      +++..+.+.+.      +|||+|||+|++|+||+|+++||+||++
T Consensus       367 ~~~~~t~~~~~------~g~~~TgD~g~~~~dG~l~~~GR~~d~i  405 (503)
T d3cw9a1         367 NQPQATAEKLQ------DGWYRTSDVAVWTPEGTVRILGRVDDMI  405 (503)
T ss_dssp             TCHHHHHHHEE------TTEEEEEEEEEECTTSCEEEEEESSCCE
T ss_pred             CChhhhHHHhc------CCceecccccccccCCeEEeCCCcCCeE
Confidence            88887777664      7999999999999999999999999985

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

Probab=84.41  E-value=2.2  Score=39.66  Aligned_cols=94  Identities=11%  Similarity=0.031  Sum_probs=69.3

Q ss_pred             EEEEccCCCCCcceEEeehHHHHHHhhhhhh---hcCCCCCCeEEEeccchhhhhhHHHHHHHHhcCceEEecC-CCChh
Q psy8225         212 AYIYTSGTTGLPKAAVMTHVRAMFMAISGRY---QTGLTSDDVVYTTLPLYHTAGGLLGIGQCLLGGSTVVIRS-KFSAS  287 (479)
Q Consensus       212 ~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~---~~~~~~~d~~~~~~pl~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~  287 (479)
                      .+.++.+.++    ..+|...+...+..+..   ..+++++|++...++-+..  +...+++++..|+..+... .++.+
T Consensus        36 ~~a~~d~~~~----~~lTy~el~~~~~~lA~~L~~~Gi~~Gd~Vai~~~ns~e--~~v~~lA~~~~G~i~vpl~~~~~~~  109 (541)
T d1lcia_          36 TIAFTDAHIE----VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQ--FFMPVLGALFIGVAVAPANDIYNER  109 (541)
T ss_dssp             CEEEEETTTC----CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCSS--THHHHHHHHHHTCEEEECCTTCCHH
T ss_pred             eEEEEeCCCC----eEeeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHH--HHHHHHHHHHhCeEEEecCCCCCHH
Confidence            3444555544    45788888776665443   4578999999888876533  3566778888999888765 56888


Q ss_pred             HHHHHHHHhcccEEEEehHHHHHH
Q psy8225         288 NFWKDCIKYNCTVAQYIGEMCRYL  311 (479)
Q Consensus       288 ~~~~~i~~~~~t~~~~~p~~l~~l  311 (479)
                      ++...++..++..++.....+..+
T Consensus       110 ~l~~~l~~~~~~~vi~~~~~~~~~  133 (541)
T d1lcia_         110 ELLNSMNISQPTVVFVSKKGLQKI  133 (541)
T ss_dssp             HHHHHHHHHCCSEEEECGGGHHHH
T ss_pred             HHHHHHHhccceEEeeeccccccc
Confidence            999999999999999988776543