Psyllid ID: psy8230

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-
MLEVEAAQKLILDFIETNKCGQQKQSLSCRQAGGYIVAETTVAKDDLPPFDASIKDGYAVIASDGAGKRKVVGERSAGPVKSASPLKSSQCYRINTGAPIPPGADSVVQVEDTELSKGKDGEEVEIKILKTPTKGQDIRVKDSVVQVEDTELTKGKDGEEVEIKILKTPTKGQDIRVKGIDIRKGATILEEGNLIGPPELGLLASVGVTSITVYKKPIIHILSTGNELDEPDAHVLKPVVTFHVPRKYLGG
cccHHHHHHHHHHHccccccccccEEEEcccccccEEEccccccccccccccccccEEEEEEcccccccEEEEEEcccccccccccccccEEEEcccccccccccEEEEEEEEEEccccccHHHHHHHHccccccccccccccEEEEEccccccccccccEEEEEEccccccccEEccccccccccEEEccccEEcHHHHHHHHHccccEEEEEcccEEEEEEccccccccccccccccEEEccccccccc
cccHHHHHHHHHHHccccccccccEEEEHHHHHccEEccccEcccccccccccccccEEEEEcccccccEEEEEEcccccccccEcccccEEEEccccEccccccEEEEcccEEEEcccccccEEEEEEEEccccccccEcccEEEEccccccccccccccEEEEEEccccccccccccccHHcccEEEcccccccHHHHHHHHHccccEEEEEEccEEEEEEcccccccccccccccccEEccccHEHcc
MLEVEAAQKLILDFIetnkcgqqkqslscrqaggyivaettvakddlppfdasikdgyaviasdgagkrkvvgersagpvksasplkssqcyrintgapippgadsvvqvedtelskgkdgeevEIKILktptkgqdirvkdsvvqvedteltkgkdgeeVEIKILktptkgqdirvkgidirkgatileegnligppelglLASVGVtsitvykkPIIHILstgneldepdahvlkpvvtfhvprkylgg
MLEVEAAQKLILDFietnkcgqqkqSLSCRQAGGYIVAETTVAKDDLPPFDASIKDGYAVIasdgagkrkvvgersagpvksasplkssqcYRINTGapippgadsVVQVEDTelskgkdgeeveikilktptkgqdirvkdsvvqvedteltkgkdgeeveikilktptkgqdirvkgIDIRKGATILeegnligppeLGLLASVGVTSITVYKKPIIHILSTgneldepdahvlkpvvtfhvprkylgg
MLEVEAAQKLILDFIETNKCGQQKQSLSCRQAGGYIVAETTVAKDDLPPFDASIKDGYAVIASDGAGKRKVVGERSAGPVKSASPLKSSQCYRINTGAPIPPGADSVVQVEDTELSKGKDGEEVEIKILKTPTKGQDIRVKDSVVQVEDTELTKGKDGEEVEIKILKTPTKGQDIRVKGIDIRKGATILEEGNLIGPPELGLLASVGVTSITVYKKPIIHILSTGNELDEPDAHVLKPVVTFHVPRKYLGG
*******QKLILDFIETNKCGQQKQSLSCRQAGGYIVAETTVAKDDLPPFDASIKDGYAVIA***************************************************************************************************EIKILKTPTKGQDIRVKGIDIRKGATILEEGNLIGPPELGLLASVGVTSITVYKKPIIHILSTGNELDEPDAHVLKPVVTFHVPRK****
MLEVEAAQKLILDFIETNKCGQQKQSLSCRQAGGYIVAETTVAKDDLPPFDASIKDGYAVIASDGAGKRKVVGERSAGPVKSASPLKSSQCYRINTGAPIPPGADSVVQVEDTELSKGKDGEEVEIKILKTPTKGQDIRVKDSVVQVEDTELTKGKDGEEVEIKILKTPTKGQDIRVKGIDIRKGATILEEGNLIGPPELGLLASVGVTSITVYKKPIIHILSTGNELDEPDAHVLKPVVTFHVPRKYLGG
MLEVEAAQKLILDFIETNKCGQQKQSLSCRQAGGYIVAETTVAKDDLPPFDASIKDGYAVIASDGAG********************SSQCYRINTGAPIPPGADSVVQVEDTELSKGKDGEEVEIKILKTPTKGQDIRVKDSVVQVEDTELTKGKDGEEVEIKILKTPTKGQDIRVKGIDIRKGATILEEGNLIGPPELGLLASVGVTSITVYKKPIIHILSTGNELDEPDAHVLKPVVTFHVPRKYLGG
MLEVEAAQKLILDFIETNKCGQQKQSLSCRQAGGYIVAETTVAKDDLPPFDASIKDGYAVIASDGAGKRKVVGERSAGPVKSASPLKSSQCYRINTGAPIPPGADSVVQVEDTELSKGKDGEEVEIKILKTPTKGQDIRVKDSVVQVEDTELTK***GEEVEIKILKTPTKGQDIRVKGIDIRKGATILEEGNLIGPPELGLLASVGVTSITVYKKPIIHILSTGNELDEPDAHVLKPVVTFHVPRKYLGG
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MLEVEAAQKLILDFIETNKCGQQKQSLSCRQAGGYIVAETTVAKDDLPPFDASIKDGYAVIASDGAGKRKVVGERSAGPVKSASPLKSSQCYRINTGAPIPPGADSVVQVEDTELSKGKDGEEVEIKILKTPTKGQDIRVKDSVVQVEDTELTKGKDGEEVEIKILKTPTKGQDIRVKGIDIRKGATILEEGNLIGPPELGLLASVGVTSITVYKKPIIHILSTGNELDEPDAHVLKPVVTFHVPRKYLGG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query251 2.2.26 [Sep-21-2011]
Q9NQX3 736 Gephyrin OS=Homo sapiens yes N/A 0.677 0.230 0.415 4e-34
Q03555 768 Gephyrin OS=Rattus norveg yes N/A 0.677 0.221 0.415 4e-34
Q8BUV3 769 Gephyrin OS=Mus musculus yes N/A 0.677 0.221 0.415 4e-34
Q9PW38 736 Gephyrin OS=Gallus gallus yes N/A 0.677 0.230 0.420 5e-34
Q39054 670 Molybdopterin biosynthesi yes N/A 0.689 0.258 0.409 3e-28
Q54KM0 718 Gephyrin OS=Dictyostelium yes N/A 0.741 0.259 0.311 1e-18
P39205 601 Molybdenum cofactor synth yes N/A 0.374 0.156 0.484 5e-18
P45210 404 Molybdopterin molybdenumt yes N/A 0.653 0.405 0.312 3e-15
Q58296 620 Putative molybdopterin bi yes N/A 0.741 0.3 0.276 5e-14
P12281 411 Molybdopterin molybdenumt N/A N/A 0.649 0.396 0.293 3e-13
>sp|Q9NQX3|GEPH_HUMAN Gephyrin OS=Homo sapiens GN=GPHN PE=1 SV=1 Back     alignment and function desciption
 Score =  145 bits (365), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 89/214 (41%), Positives = 121/214 (56%), Gaps = 44/214 (20%)

Query: 27  LSCRQAGGYIVAETTVAKDDLPPFDASIKDGYAVIASDGAGKRKVVGERSAG--PVKSAS 84
           ++ R   G ++A+   AKD+LPPF AS+KDGYAV A+DG G R ++GE  AG  P ++  
Sbjct: 345 INYRDGMGRVLAQDVYAKDNLPPFPASVKDGYAVRAADGPGDRFIIGESQAGEQPTQTVM 404

Query: 85  PLKSSQCYRINTGAPIPPGADSVVQVEDTELSKGKDG--EEVEIKILKTPTKGQDIRVKD 142
           P    Q  R+ TGAPIP GAD+VVQVEDTEL +  D   EE+E++IL     GQDIR   
Sbjct: 405 P---GQVMRVTTGAPIPCGADAVVQVEDTELIRESDDGTEELEVRILVQARPGQDIR--- 458

Query: 143 SVVQVEDTELTKGKDGEEVEIKILKTPTKGQDIRVKGIDIRKGATILEEGNLIGPPELGL 202
                                     P         G DI++G  +L +G  +GP E+GL
Sbjct: 459 --------------------------PI--------GHDIKRGECVLAKGTHMGPSEIGL 484

Query: 203 LASVGVTSITVYKKPIIHILSTGNELDEPDAHVL 236
           LA+VGVT + V K P++ ++STGNEL  P+  +L
Sbjct: 485 LATVGVTEVEVNKFPVVAVMSTGNELLNPEDDLL 518
Microtubule-associated protein involved in membrane protein-cytoskeleton interactions. It is thought to anchor the inhibitory glycine receptor (GLYR) to subsynaptic microtubules (By similarity). Catalyzes two steps in the biosynthesis of the molybdenum cofactor. In the first step, molybdopterin is adenylated. Subsequently, molybdate is inserted into adenylated molybdopterin and AMP is released.
Homo sapiens (taxid: 9606)
EC: 2EC: .EC: 1EC: 0EC: .EC: 1EC: .EC: 1
>sp|Q03555|GEPH_RAT Gephyrin OS=Rattus norvegicus GN=Gphn PE=1 SV=3 Back     alignment and function description
>sp|Q8BUV3|GEPH_MOUSE Gephyrin OS=Mus musculus GN=Gphn PE=1 SV=2 Back     alignment and function description
>sp|Q9PW38|GEPH_CHICK Gephyrin OS=Gallus gallus GN=GPHN PE=1 SV=1 Back     alignment and function description
>sp|Q39054|CNX1_ARATH Molybdopterin biosynthesis protein CNX1 OS=Arabidopsis thaliana GN=CNX1 PE=1 SV=2 Back     alignment and function description
>sp|Q54KM0|GEPH_DICDI Gephyrin OS=Dictyostelium discoideum GN=gphn PE=3 SV=1 Back     alignment and function description
>sp|P39205|CIN_DROME Molybdenum cofactor synthesis protein cinnamon OS=Drosophila melanogaster GN=cin PE=1 SV=3 Back     alignment and function description
>sp|P45210|MOEA_HAEIN Molybdopterin molybdenumtransferase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=moeA PE=3 SV=1 Back     alignment and function description
>sp|Q58296|Y886_METJA Putative molybdopterin biosynthesis protein MJ0886 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0886 PE=3 SV=1 Back     alignment and function description
>sp|P12281|MOEA_ECOLI Molybdopterin molybdenumtransferase OS=Escherichia coli (strain K12) GN=moeA PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query251
91081051 612 PREDICTED: similar to predicted protein 0.756 0.310 0.4 2e-35
156368575 624 predicted protein [Nematostella vectensi 0.625 0.251 0.467 4e-35
443693794 639 hypothetical protein CAPTEDRAFT_226958 [ 0.752 0.295 0.390 1e-34
346465405 492 hypothetical protein [Amblyomma maculatu 0.764 0.390 0.436 8e-34
321471040 678 hypothetical protein DAPPUDRAFT_317081 [ 0.764 0.283 0.395 2e-33
147905045 857 gephyrin [Xenopus laevis] gi|49899139|gb 0.677 0.198 0.415 7e-33
348539560 785 PREDICTED: gephyrin-like [Oreochromis ni 0.661 0.211 0.423 8e-33
147906479 860 MGC83148 protein [Xenopus laevis] gi|492 0.677 0.197 0.415 1e-32
432941135 714 PREDICTED: gephyrin-like [Oryzias latipe 0.661 0.232 0.423 1e-32
410916625 736 PREDICTED: gephyrin-like isoform 1 [Taki 0.661 0.225 0.423 1e-32
>gi|91081051|ref|XP_975379.1| PREDICTED: similar to predicted protein [Tribolium castaneum] gi|270006001|gb|EFA02449.1| hypothetical protein TcasGA2_TC008136 [Tribolium castaneum] Back     alignment and taxonomy information
 Score =  155 bits (391), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 92/230 (40%), Positives = 126/230 (54%), Gaps = 40/230 (17%)

Query: 1   MLEVEAAQKLILDFIETNKCGQQKQSLSCRQAGGYIVAETTVAKDDLPPFDASIKDGYAV 60
           MLEV+ A +L+L   + ++   + + L+   A   ++AE  +A DD+PPFDAS+KDGYAV
Sbjct: 202 MLEVDEAFELVL---KESEIRVETERLAVENALFRVLAEDVLAYDDVPPFDASVKDGYAV 258

Query: 61  IASDGAGKRKVVGERSAGPVKSASPLKSSQCYRINTGAPIPPGADSVVQVEDTELSKGKD 120
           +ASDG G R+V     AG     SPL+  +  RI TGAPIPPGAD+VVQVEDT + +   
Sbjct: 259 LASDGEGPRRVRTALGAGDAPHTSPLQPGEAIRIGTGAPIPPGADAVVQVEDTSVLRKSK 318

Query: 121 GEEVEIKILKTPTKGQDIRVKDSVVQVEDTELTKGKDGEEVEIKILKTPTKGQDIRVKGI 180
           GEE+EI + K P KGQ                                     DIR  G 
Sbjct: 319 GEEIEINVNKAPVKGQ-------------------------------------DIRRMGC 341

Query: 181 DIRKGATILEEGNLIGPPELGLLASVGVTSITVYKKPIIHILSTGNELDE 230
           D+ K   +L  G  +  P +G+LA+VG +++TVYK   + I +TGNEL E
Sbjct: 342 DVAKNTVVLMNGERLKAPHVGVLAAVGKSTVTVYKPVSVGIFTTGNELKE 391

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|156368575|ref|XP_001627768.1| predicted protein [Nematostella vectensis] gi|156214688|gb|EDO35668.1| predicted protein [Nematostella vectensis] Back     alignment and taxonomy information
>gi|443693794|gb|ELT95068.1| hypothetical protein CAPTEDRAFT_226958 [Capitella teleta] Back     alignment and taxonomy information
>gi|346465405|gb|AEO32547.1| hypothetical protein [Amblyomma maculatum] Back     alignment and taxonomy information
>gi|321471040|gb|EFX82014.1| hypothetical protein DAPPUDRAFT_317081 [Daphnia pulex] Back     alignment and taxonomy information
>gi|147905045|ref|NP_001090459.1| gephyrin [Xenopus laevis] gi|49899139|gb|AAH76865.1| Gphn protein [Xenopus laevis] Back     alignment and taxonomy information
>gi|348539560|ref|XP_003457257.1| PREDICTED: gephyrin-like [Oreochromis niloticus] Back     alignment and taxonomy information
>gi|147906479|ref|NP_001085376.1| MGC83148 protein [Xenopus laevis] gi|49257222|gb|AAH71153.1| MGC83148 protein [Xenopus laevis] Back     alignment and taxonomy information
>gi|432941135|ref|XP_004082822.1| PREDICTED: gephyrin-like [Oryzias latipes] Back     alignment and taxonomy information
>gi|410916625|ref|XP_003971787.1| PREDICTED: gephyrin-like isoform 1 [Takifugu rubripes] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query251
UNIPROTKB|E2R024 662 GPHN "Uncharacterized protein" 0.669 0.253 0.415 6.7e-25
UNIPROTKB|E1C756 675 GPHN "Gephyrin" [Gallus gallus 0.669 0.248 0.415 7e-25
UNIPROTKB|F8W7D6 705 GPHN "Molybdopterin molybdenum 0.669 0.238 0.415 7.8e-25
UNIPROTKB|F1SA44 706 GPHN "Uncharacterized protein" 0.669 0.237 0.415 7.8e-25
UNIPROTKB|F1MQ57 713 Bt.53642 "Uncharacterized prot 0.669 0.235 0.415 8e-25
UNIPROTKB|F1P187 715 GPHN "Gephyrin" [Gallus gallus 0.669 0.234 0.415 8.1e-25
UNIPROTKB|Q9NQX3 736 GPHN "Gephyrin" [Homo sapiens 0.669 0.228 0.415 8.6e-25
RGD|69194 768 Gphn "gephyrin" [Rattus norveg 0.669 0.218 0.415 9.4e-25
MGI|MGI:109602 769 Gphn "gephyrin" [Mus musculus 0.669 0.218 0.415 9.4e-25
UNIPROTKB|E2R034 782 GPHN "Uncharacterized protein" 0.669 0.214 0.415 9.7e-25
UNIPROTKB|E2R024 GPHN "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
 Score = 292 (107.8 bits), Expect = 6.7e-25, P = 6.7e-25
 Identities = 76/183 (41%), Positives = 105/183 (57%)

Query:    27 LSCRQAGGYIVAETTVAKDDLPPFDASIKDGYAVIASDGAGKRKVVGERSAG--PVKSAS 84
             ++ R   G ++A+   AKD+LPPF AS+KDGYAV A+DG G R ++GE  AG  P ++  
Sbjct:   271 INYRDGMGRVLAQDVYAKDNLPPFPASVKDGYAVRAADGPGDRFIIGESQAGEQPTQTVM 330

Query:    85 PLKSSQCYRINTGAPIPPGADSVVQVEDTELSK-GKDG-EEVEIKILKTPTKGQDIRVKD 142
             P    Q  R+ TGAPIP GAD+VVQVEDTEL +   DG EE+E++IL     GQDIR   
Sbjct:   331 P---GQVMRVTTGAPIPCGADAVVQVEDTELIRESDDGTEELEVRILVQARPGQDIRPIG 387

Query:   143 SVVQVEDTELTKGKDGEEVEIKILKTPTKGQDIRVKGIDIRKG--ATILEEGNLIGPPEL 200
               ++  +  L KG      EI +L T      + V  +++ K     ++  GN +  PE 
Sbjct:   388 HDIKRGECVLAKGTHMGPSEIGLLAT------VGVTEVEVNKFPVVAVMSTGNELLNPED 441

Query:   201 GLL 203
              LL
Sbjct:   442 DLL 444
GO:0006777 "Mo-molybdopterin cofactor biosynthetic process" evidence=IEA
UNIPROTKB|E1C756 GPHN "Gephyrin" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F8W7D6 GPHN "Molybdopterin molybdenumtransferase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1SA44 GPHN "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1MQ57 Bt.53642 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1P187 GPHN "Gephyrin" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q9NQX3 GPHN "Gephyrin" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|69194 Gphn "gephyrin" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:109602 Gphn "gephyrin" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E2R034 GPHN "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query251
cd00887 394 cd00887, MoeA, MoeA family 2e-55
PLN02699 659 PLN02699, PLN02699, Bifunctional molybdopterin ade 4e-45
pfam03453163 pfam03453, MoeA_N, MoeA N-terminal region (domain 3e-44
COG0303 404 COG0303, MoeA, Molybdopterin biosynthesis enzyme [ 1e-41
PRK14498 633 PRK14498, PRK14498, putative molybdopterin biosynt 8e-36
PRK10680 411 PRK10680, PRK10680, molybdopterin biosynthesis pro 6e-28
PRK14497 546 PRK14497, PRK14497, putative molybdopterin biosynt 2e-27
PRK14491 597 PRK14491, PRK14491, putative bifunctional molybdop 3e-27
PRK14690 419 PRK14690, PRK14690, molybdopterin biosynthesis pro 6e-14
>gnl|CDD|238452 cd00887, MoeA, MoeA family Back     alignment and domain information 
 Score =  182 bits (464), Expect = 2e-55
 Identities = 84/233 (36%), Positives = 113/233 (48%), Gaps = 51/233 (21%)

Query: 4   VEAAQKLILDFIETNKCGQQKQSLSCRQAGGYIVAETTVAKDDLPPFDASIKDGYAVIAS 63
           VEAA++L+L            +++   +A G ++AE  VA  DLPPFD S  DGYAV A+
Sbjct: 1   VEAARELLLALAPPLG----TETVPLLEALGRVLAEDVVAPIDLPPFDNSAMDGYAVRAA 56

Query: 64  DGAG---KRKVVGERSAGPVKSASPLKSSQCYRINTGAPIPPGADSVVQVEDTELSKGKD 120
           D AG     +VVGE  AG      PL   +  RI TGAP+P GAD+VV VEDTE   G  
Sbjct: 57  DTAGASVTLRVVGEIPAG-EPPDGPLGPGEAVRIMTGAPLPEGADAVVMVEDTEEEGG-- 113

Query: 121 GEEVEIKILKTPTKGQDIRVKDSVVQVEDTELTKGKDGEEVEIKILKTPTKGQDIRVKGI 180
                                                     + I K    GQ+IR  G 
Sbjct: 114 -----------------------------------------RVTITKPVKPGQNIRRAGE 132

Query: 181 DIRKGATILEEGNLIGPPELGLLASVGVTSITVYKKPIIHILSTGNELDEPDA 233
           DI+ G  +L  G  + P ++GLLAS+G+  + VY++P + I+STG+EL EP  
Sbjct: 133 DIKAGDVLLPAGTRLTPADIGLLASLGIAEVPVYRRPRVAIISTGDELVEPGE 185

Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. Length = 394
>gnl|CDD|215376 PLN02699, PLN02699, Bifunctional molybdopterin adenylyltransferase/molybdopterin molybdenumtransferase Back     alignment and domain information
>gnl|CDD|217567 pfam03453, MoeA_N, MoeA N-terminal region (domain I and II) Back     alignment and domain information
>gnl|CDD|223380 COG0303, MoeA, Molybdopterin biosynthesis enzyme [Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|237732 PRK14498, PRK14498, putative molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein; Provisional Back     alignment and domain information
>gnl|CDD|182643 PRK10680, PRK10680, molybdopterin biosynthesis protein MoeA; Provisional Back     alignment and domain information
>gnl|CDD|172968 PRK14497, PRK14497, putative molybdopterin biosynthesis protein MoeA/unknown domain fusion protein; Provisional Back     alignment and domain information
>gnl|CDD|237729 PRK14491, PRK14491, putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional Back     alignment and domain information
>gnl|CDD|237789 PRK14690, PRK14690, molybdopterin biosynthesis protein MoeA; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 251
COG0303 404 MoeA Molybdopterin biosynthesis enzyme [Coenzyme m 100.0
PRK10680 411 molybdopterin biosynthesis protein MoeA; Provision 100.0
PRK14497 546 putative molybdopterin biosynthesis protein MoeA/u 100.0
PRK14690 419 molybdopterin biosynthesis protein MoeA; Provision 100.0
cd00887 394 MoeA MoeA family. Members of this family are invol 100.0
PLN02699 659 Bifunctional molybdopterin adenylyltransferase/mol 100.0
PRK14491 597 putative bifunctional molybdopterin-guanine dinucl 100.0
PRK14498 633 putative molybdopterin biosynthesis protein MoeA/L 100.0
PF03453162 MoeA_N: MoeA N-terminal region (domain I and II); 100.0
KOG2371|consensus 411 100.0
cd03522 312 MoeA_like MoeA_like. This domain is similar to a d 98.29
PF07697222 7TMR-HDED: 7TM-HD extracellular; InterPro: IPR0116 89.03
>COG0303 MoeA Molybdopterin biosynthesis enzyme [Coenzyme metabolism] Back     alignment and domain information 
Probab=100.00  E-value=1.1e-58  Score=441.94  Aligned_cols=202  Identities=41%  Similarity=0.640  Sum_probs=191.7

Q ss_pred             CCCHHHHHHHHHhhcccccCCCccEEEecccccCceeccccccCCCCCCCCCCcCceEeeeeCCCCC--ceeEEEEeeCC
Q psy8230           1 MLEVEAAQKLILDFIETNKCGQQKQSLSCRQAGGYIVAETTVAKDDLPPFDASIKDGYAVIASDGAG--KRKVVGERSAG   78 (251)
Q Consensus         1 mis~~eAl~~i~~~~~~~~~~~~~e~v~l~~A~GrVlAedv~A~~~~P~fd~SamDGYAv~~~d~~~--~~~V~g~~~AG   78 (251)
                      |+|++||++++++++.++.   .+|++++.+|+||+|||||+|+.|+|+||+|+||||||+++|+.+  .|+|+|+++||
T Consensus         6 l~~veeA~~~l~~~~~~~~---~~e~v~l~~a~GrvLAedi~A~~d~P~fd~samDGyAvr~~D~~~~~~l~V~g~i~aG   82 (404)
T COG0303           6 LLPVEEALEILLAHASPLG---ETETVPLEEALGRVLAEDVVAPLDVPPFDRSAMDGYAVRAEDTDGAATLRVVGEIAAG   82 (404)
T ss_pred             CCCHHHHHHHHHhcccCCC---CceEEEHHHcCCCeeehhhccCCCCCCCcccccceeEEchhccCCceeEEEEEEecCC
Confidence            6899999999999999983   599999999999999999999999999999999999999999986  69999999999


Q ss_pred             CCCCCCCCCCCCeEEEccCCCCCCCCCEEEEeeeeeeccCCCCchhhhhhhcCCCCCcccccccccceecccccccCCCC
Q psy8230          79 PVKSASPLKSSQCYRINTGAPIPPGADSVVQVEDTELSKGKDGEEVEIKILKTPTKGQDIRVKDSVVQVEDTELTKGKDG  158 (251)
Q Consensus        79 ~~~~~~~l~~g~~v~I~TGapiP~gaDaVV~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  158 (251)
                      +. +...+++|+|+|||||||||+|||||||+|++...+                                         
T Consensus        83 ~~-~~~~v~~geavrI~TGA~lP~gaDaVV~~E~~~~~~-----------------------------------------  120 (404)
T COG0303          83 EV-PDLEVGPGEAVRIMTGAPLPEGADAVVMVEDTREEG-----------------------------------------  120 (404)
T ss_pred             CC-CCcccCCCeEEEEeCCCCCCCCCCEEEEEEEEEecC-----------------------------------------
Confidence            77 778999999999999999999999999999986432                                         


Q ss_pred             ceeEEEEecCCCCCCCeecCcccccCCCEEecCCCeeCHHHHHHHHHcCCCeEEEecCCeEEEEecCCcccCCCCCCCCC
Q psy8230         159 EEVEIKILKTPTKGQDIRVKGIDIRKGATILEEGNLIGPPELGLLASVGVTSITVYKKPIIHILSTGNELDEPDAHVLKP  238 (251)
Q Consensus       159 ~~~~i~i~~~~~~g~nIr~~G~Di~~G~~ll~~G~~I~p~~i~lLas~Gi~~V~V~~~prV~ilsTGdEL~~~~~~~~~~  238 (251)
                        ..|.|.+++.+|+|||++|+|+++|++|+++|++|+|.++++||++|+.+|+||+||||+||||||||+++++ +++|
T Consensus       121 --~~v~i~~~~~~g~nv~~~Gedi~~G~vil~~G~~L~p~~i~llas~Gi~~V~V~rkprV~IisTGdELv~~~~-~l~~  197 (404)
T COG0303         121 --DDVRILRAVKPGQNVRRAGEDVAKGDVILRAGTRLTPAEIALLASLGIAEVKVYRKPRVAIISTGDELVEPGQ-PLEP  197 (404)
T ss_pred             --CcEEEeccCCCCcccccccccccCCCEeecCCCCcCHHHHHHHHhCCCceEEEecCCEEEEEecCccccCCCC-CCCC
Confidence              1488999999999999999999999999999999999999999999999999999999999999999999997 8999


Q ss_pred             CeEEccCCCCcC
Q psy8230         239 VVTFHVPRKYLG  250 (251)
Q Consensus       239 g~~~d~N~~~l~  250 (251)
                      |||||+|++||.
T Consensus       198 gqI~dsN~~~l~  209 (404)
T COG0303         198 GQIYDSNSYMLA  209 (404)
T ss_pred             CeEEecCHHHHH
Confidence            999999999874

>PRK10680 molybdopterin biosynthesis protein MoeA; Provisional Back     alignment and domain information
>PRK14497 putative molybdopterin biosynthesis protein MoeA/unknown domain fusion protein; Provisional Back     alignment and domain information
>PRK14690 molybdopterin biosynthesis protein MoeA; Provisional Back     alignment and domain information
>cd00887 MoeA MoeA family Back     alignment and domain information
>PLN02699 Bifunctional molybdopterin adenylyltransferase/molybdopterin molybdenumtransferase Back     alignment and domain information
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional Back     alignment and domain information
>PRK14498 putative molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein; Provisional Back     alignment and domain information
>PF03453 MoeA_N: MoeA N-terminal region (domain I and II); InterPro: IPR005110 This entry represents the N-terminal and linker domains of the MoeA protein Back     alignment and domain information
>KOG2371|consensus Back     alignment and domain information
>cd03522 MoeA_like MoeA_like Back     alignment and domain information
>PF07697 7TMR-HDED: 7TM-HD extracellular; InterPro: IPR011624 This entry represents the extracellular domain of the 7TM-HD (7TM Receptors with HD hydrolase) protein family [] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query251
1t3e_A 421 Structural Basis Of Dynamic Glycine Receptor Cluste 4e-35
2fts_A 419 Crystal Structure Of The Glycine Receptor-Gephyrin 4e-35
1uz5_A 402 The Crystal Structure Of Molybdopterin Biosynthesis 3e-15
2nrs_A 411 Moea S371w Length = 411 2e-14
2nrp_A 411 Moea R350a Length = 411 2e-14
1g8l_A 411 Crystal Structure Of Escherichia Coli Moea Length = 3e-14
2nro_A 411 Moea K279q Length = 411 3e-14
2nqv_A 411 Moea D228a Length = 411 3e-14
1fc5_A 411 Crystal Structure Of Molybdopterin Biosynthesis Moe 4e-14
2nqu_A 411 Moea E188q Length = 411 6e-14
2nqr_A 411 Moea D142n Length = 411 8e-14
2nqk_A 411 Moea D59n Mutant Length = 411 8e-14
2nqn_A 411 Moea T100w Length = 411 9e-14
2nqm_A 411 Moea T100a Mutant Length = 411 9e-14
2nqq_A 411 Moea R137q Length = 411 1e-13
2nqs_A 411 Moea E188a Length = 411 1e-13
1wu2_A 396 Crystal Structure Of Molybdopterin Biosynthesis Moe 1e-10
1xi8_A 403 Molybdenum Cofactor Biosynthesis Protein From Pyroc 4e-09
>pdb|1T3E|A Chain A, Structural Basis Of Dynamic Glycine Receptor Clustering Length = 421 Back     alignment and structure 
Iteration: 1

 Score =  144 bits (364), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 89/214 (41%), Positives = 121/214 (56%), Gaps = 44/214 (20%)
Query: 27  LSCRQAGGYIVAETTVAKDDLPPFDASIKDGYAVIASDGAGKRKVVGERSAG--PVKSAS 84
           ++ R   G ++A+   AKD+LPPF AS+KDGYAV A+DG G R ++GE  AG  P ++  
Sbjct: 30  INYRDGMGRVLAQDVYAKDNLPPFPASVKDGYAVRAADGPGDRFIIGESQAGEQPTQTVM 89
Query: 85  PLKSSQCYRINTGAPIPPGADSVVQVEDTELSKGKDG--EEVEIKILKTPTKGQDIRVKD 142
           P    Q  R+ TGAPIP GAD+VVQVEDTEL +  D   EE+E++IL     GQDIR   
Sbjct: 90  P---GQVMRVTTGAPIPCGADAVVQVEDTELIRESDDGTEELEVRILVQARPGQDIR--- 143
Query: 143 SVVQVEDTELTKGKDGEEVEIKILKTPTKGQDIRVKGIDIRKGATILEEGNLIGPPELGL 202
                                     P         G DI++G  +L +G  +GP E+GL
Sbjct: 144 --------------------------PI--------GHDIKRGECVLAKGTHMGPSEIGL 169
Query: 203 LASVGVTSITVYKKPIIHILSTGNELDEPDAHVL 236
           LA+VGVT + V K P++ ++STGNEL  P+  +L
Sbjct: 170 LATVGVTEVEVNKFPVVAVMSTGNELLNPEDDLL 203
>pdb|2FTS|A Chain A, Crystal Structure Of The Glycine Receptor-Gephyrin Complex Length = 419 Back     alignment and structure
>pdb|1UZ5|A Chain A, The Crystal Structure Of Molybdopterin Biosynthesis Moea Protein From Pyrococcus Horikosii Length = 402 Back     alignment and structure
>pdb|2NRS|A Chain A, Moea S371w Length = 411 Back     alignment and structure
>pdb|2NRP|A Chain A, Moea R350a Length = 411 Back     alignment and structure
>pdb|1G8L|A Chain A, Crystal Structure Of Escherichia Coli Moea Length = 411 Back     alignment and structure
>pdb|2NRO|A Chain A, Moea K279q Length = 411 Back     alignment and structure
>pdb|2NQV|A Chain A, Moea D228a Length = 411 Back     alignment and structure
>pdb|1FC5|A Chain A, Crystal Structure Of Molybdopterin Biosynthesis Moea Protein Length = 411 Back     alignment and structure
>pdb|2NQU|A Chain A, Moea E188q Length = 411 Back     alignment and structure
>pdb|2NQR|A Chain A, Moea D142n Length = 411 Back     alignment and structure
>pdb|2NQK|A Chain A, Moea D59n Mutant Length = 411 Back     alignment and structure
>pdb|2NQN|A Chain A, Moea T100w Length = 411 Back     alignment and structure
>pdb|2NQM|A Chain A, Moea T100a Mutant Length = 411 Back     alignment and structure
>pdb|2NQQ|A Chain A, Moea R137q Length = 411 Back     alignment and structure
>pdb|2NQS|A Chain A, Moea E188a Length = 411 Back     alignment and structure
>pdb|1WU2|A Chain A, Crystal Structure Of Molybdopterin Biosynthesis Moea Protein From Pyrococcus Horikoshii Ot3 Length = 396 Back     alignment and structure
>pdb|1XI8|A Chain A, Molybdenum Cofactor Biosynthesis Protein From Pyrococcus Furiosus Pfu-1657500-001 Length = 403 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query251
2fts_A 419 Gephyrin; gephyrin, neuroreceptor anchoring, struc 100.0
1uz5_A 402 MOEA protein, 402AA long hypothetical molybdopteri 100.0
1g8l_A 411 Molybdopterin biosynthesis MOEA protein; molybdenu 100.0
1wu2_A 396 MOEA protein, molybdopterin biosynthesis MOEA prot 100.0
3rfq_A 185 Pterin-4-alpha-carbinolamine dehydratase MOAB2; st 95.9
>2fts_A Gephyrin; gephyrin, neuroreceptor anchoring, structu protein; 2.41A {Rattus norvegicus} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 2fu3_A 1t3e_A Back     alignment and structure
Probab=100.00  E-value=8.6e-58  Score=435.26  Aligned_cols=209  Identities=44%  Similarity=0.682  Sum_probs=192.4

Q ss_pred             CCCHHHHHHHHHhhcccccCCCccEEEecccccCceeccccccCCCCCCCCCCcCceEeeeeCCCCCceeEEEEeeCCCC
Q psy8230           1 MLEVEAAQKLILDFIETNKCGQQKQSLSCRQAGGYIVAETTVAKDDLPPFDASIKDGYAVIASDGAGKRKVVGERSAGPV   80 (251)
Q Consensus         1 mis~~eAl~~i~~~~~~~~~~~~~e~v~l~~A~GrVlAedv~A~~~~P~fd~SamDGYAv~~~d~~~~~~V~g~~~AG~~   80 (251)
                      |+|++||++++++.+.+.    ..|+|+|.+|+||||||||+|+.++|+|++|+||||||+++|+...|+|+|+++||+.
T Consensus         6 ~~s~~eA~~~i~~~~~~~----~~e~v~l~~A~GrvLAedv~A~~~~P~f~~SamDGyAv~~~D~~~~l~v~~~i~aG~~   81 (419)
T 2fts_A            6 LTSMDKAFITVLEMTPVL----GTEIINYRDGMGRVLAQDVYAKDNLPPFPASVKDGYAVRAADGPGDRFIIGESQAGEQ   81 (419)
T ss_dssp             EEEHHHHHHHHHHHSCCC----CEEEEEGGGCTTCBBSSCEECSSCBSSSCEESSSEEEECGGGCSCEEEEEEECCTTSC
T ss_pred             CCCHHHHHHHHHhcCCCC----CcEEEEHHHhCCCeeeeeeEeCCCCCCCCCcccceEEEeeccCCcceEEEEEEeCCCC
Confidence            789999999999988776    7899999999999999999999999999999999999999999888999999999987


Q ss_pred             CCCCCCCCCCeEEEccCCCCCCCCCEEEEeeeeeeccCCCCchhhhhhhcCCCCCcccccccccceecccccccCCCCce
Q psy8230          81 KSASPLKSSQCYRINTGAPIPPGADSVVQVEDTELSKGKDGEEVEIKILKTPTKGQDIRVKDSVVQVEDTELTKGKDGEE  160 (251)
Q Consensus        81 ~~~~~l~~g~~v~I~TGapiP~gaDaVV~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  160 (251)
                       ....+++|+|+||||||+||+|||||||+|+++.....++                                   +.++
T Consensus        82 -~~~~l~~g~avrI~TGa~~P~gaDaVv~~E~~~~~~~~~~-----------------------------------~~~~  125 (419)
T 2fts_A           82 -PTQTVMPGQVMRVTTGAPIPCGADAVVQVEDTELIRESDD-----------------------------------GTEE  125 (419)
T ss_dssp             -CCCCCCTTEEEEECTTCBCCTTCCEEEEGGGEEEEEESTT-----------------------------------SSCE
T ss_pred             -CCCccCCCeEEEEeCCCCCCCCCcEEEEEEeEEecccccc-----------------------------------CCCC
Confidence             6678999999999999999999999999999975321000                                   0123


Q ss_pred             eEEEEecCCCCCCCeecCcccccCCCEEecCCCeeCHHHHHHHHHcCCCeEEEecCCeEEEEecCCcccCCCCCCCCCCe
Q psy8230         161 VEIKILKTPTKGQDIRVKGIDIRKGATILEEGNLIGPPELGLLASVGVTSITVYKKPIIHILSTGNELDEPDAHVLKPVV  240 (251)
Q Consensus       161 ~~i~i~~~~~~g~nIr~~G~Di~~G~~ll~~G~~I~p~~i~lLas~Gi~~V~V~~~prV~ilsTGdEL~~~~~~~~~~g~  240 (251)
                      ..|.|.+++++|+|||++|+|+++|++|+++|++|+|.++|+||++|+.+|+||++|||+||||||||+++++ ++.+|+
T Consensus       126 ~~v~i~~~~~~g~nIr~~Gedi~~G~~ll~~G~~l~p~~iglLas~G~~~v~V~~~prv~IistGdEl~~~g~-~~~~G~  204 (419)
T 2fts_A          126 LEVRILVQARPGQDIRPIGHDIKRGECVLAKGTHMGPSEIGLLATVGVTEVEVNKFPVVAVMSTGNELLNPED-DLLPGK  204 (419)
T ss_dssp             EEEEECSCCCTTTTEECTTSSBCTTCEEECTTCBCCHHHHHHHHHHTCCEEEEECCCCEEEEEECTTEECTTS-CCCTTC
T ss_pred             CeEEEecCCCCCCCCccCCcCcCCCCEEECCCCCcCHHHHHHHHhCCCCeeEecCCCEEEEEEechhccCCCC-CCCCCc
Confidence            5788999999999999999999999999999999999999999999999999999999999999999999999 899999


Q ss_pred             EEccCCCCcC
Q psy8230         241 TFHVPRKYLG  250 (251)
Q Consensus       241 ~~d~N~~~l~  250 (251)
                      +||+|++||.
T Consensus       205 i~dsN~~~L~  214 (419)
T 2fts_A          205 IRDSNRSTLL  214 (419)
T ss_dssp             EECCHHHHHH
T ss_pred             EecCchHHHH
Confidence            9999999873
>1uz5_A MOEA protein, 402AA long hypothetical molybdopterin biosynthesis MOEA protein; MOEA molybdopterin, MOCF biosynthesis; 2.05A {Pyrococcus horikoshii} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 Back     alignment and structure
>1g8l_A Molybdopterin biosynthesis MOEA protein; molybdenum cofactor biosynthesis, metal binding protein; 1.95A {Escherichia coli} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 1fc5_A 1g8r_A 2nqu_A 2nro_A 2nqq_A 2nqk_A 2nqr_A 2nqm_A 2nqs_A 2nrp_A 2nqv_A 2nrs_A 2nqn_A Back     alignment and structure
>1wu2_A MOEA protein, molybdopterin biosynthesis MOEA protein; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.30A {Pyrococcus horikoshii} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 1xi8_A Back     alignment and structure
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 251
d2ftsa2181 b.103.1.1 (A:318-498) Gephyrin, domains 3 and 4 {R 6e-33
d2nqra2171 b.103.1.1 (A:7-177) Molybdenum cofactor biosynthes 1e-27
d1wu2a2175 b.103.1.1 (A:6-180) Molybdenum cofactor biosynthes 4e-19
d1uz5a2176 b.103.1.1 (A:5-180) Molybdenum cofactor biosynthes 3e-18
>d2ftsa2 b.103.1.1 (A:318-498) Gephyrin, domains 3 and 4 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 181 Back     information, alignment and structure

class: All beta proteins
fold: MoeA N-terminal region -like
superfamily: MoeA N-terminal region -like
family: MoeA N-terminal region -like
domain: Gephyrin, domains 3 and 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  116 bits (290), Expect = 6e-33
 Identities = 79/215 (36%), Positives = 111/215 (51%), Gaps = 40/215 (18%)

Query: 1   MLEVEAAQKLILDFIETNKCGQQKQSLSCRQAGGYIVAETTVAKDDLPPFDASIKDGYAV 60
           +  ++ A   +L+           + ++ R   G ++A+   AKD+LPPF AS+KDGYAV
Sbjct: 6   LTSMDKAFITVLEMTPV----LGTEIINYRDGMGRVLAQDVYAKDNLPPFPASVKDGYAV 61

Query: 61  IASDGAGKRKVVGERSAGPVKSASPLKSSQCYRINTGAPIPPGADSVVQVEDTELSKGKD 120
            A+DG G R ++GE  AG  +    +   Q  R+ TGAPIP GAD+VVQVEDTEL +  D
Sbjct: 62  RAADGPGDRFIIGESQAGE-QPTQTVMPGQVMRVTTGAPIPCGADAVVQVEDTELIRESD 120

Query: 121 GEEVEIKILKTPTKGQDIRVKDSVVQVEDTELTKGKDGEEVEIKILKTPTKGQDIRVKGI 180
                                                 EE+E++IL     GQDIR  G 
Sbjct: 121 DGT-----------------------------------EELEVRILVQARPGQDIRPIGH 145

Query: 181 DIRKGATILEEGNLIGPPELGLLASVGVTSITVYK 215
           DI++G  +L +G  +GP E+GLLA+VGVT + V K
Sbjct: 146 DIKRGECVLAKGTHMGPSEIGLLATVGVTEVEVNK 180
>d2nqra2 b.103.1.1 (A:7-177) Molybdenum cofactor biosynthesis protein MoeA, N-terminal and linker domains {Escherichia coli [TaxId: 562]} Length = 171 Back     information, alignment and structure
>d1wu2a2 b.103.1.1 (A:6-180) Molybdenum cofactor biosynthesis protein MoeA, N-terminal and linker domains {Pyrococcus horikoshii, PH1647 [TaxId: 53953]} Length = 175 Back     information, alignment and structure
>d1uz5a2 b.103.1.1 (A:5-180) Molybdenum cofactor biosynthesis protein MoeA, N-terminal and linker domains {Archaeon Pyrococcus horikoshii, PH0582 [TaxId: 53953]} Length = 176 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query251
d2ftsa2181 Gephyrin, domains 3 and 4 {Rat (Rattus norvegicus) 100.0
d1uz5a2176 Molybdenum cofactor biosynthesis protein MoeA, N-t 100.0
d2nqra2171 Molybdenum cofactor biosynthesis protein MoeA, N-t 100.0
d1wu2a2175 Molybdenum cofactor biosynthesis protein MoeA, N-t 100.0
>d2ftsa2 b.103.1.1 (A:318-498) Gephyrin, domains 3 and 4 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
class: All beta proteins
fold: MoeA N-terminal region -like
superfamily: MoeA N-terminal region -like
family: MoeA N-terminal region -like
domain: Gephyrin, domains 3 and 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=2.3e-52  Score=355.90  Aligned_cols=175  Identities=45%  Similarity=0.731  Sum_probs=162.0

Q ss_pred             CCCHHHHHHHHHhhcccccCCCccEEEecccccCceeccccccCCCCCCCCCCcCceEeeeeCCCCCceeEEEEeeCCCC
Q psy8230           1 MLEVEAAQKLILDFIETNKCGQQKQSLSCRQAGGYIVAETTVAKDDLPPFDASIKDGYAVIASDGAGKRKVVGERSAGPV   80 (251)
Q Consensus         1 mis~~eAl~~i~~~~~~~~~~~~~e~v~l~~A~GrVlAedv~A~~~~P~fd~SamDGYAv~~~d~~~~~~V~g~~~AG~~   80 (251)
                      |+|++||+++|++....+    .+|.|+|.+|+||||||||+|+.++|+||+|+||||||+++|+.+.+.|+|++.||..
T Consensus         6 mis~~eA~~~i~~~~~~~----~~e~v~l~~a~gRvlAedi~A~~~~P~~~~SamDGyAv~~~d~~~~~~v~g~~~aG~~   81 (181)
T d2ftsa2           6 LTSMDKAFITVLEMTPVL----GTEIINYRDGMGRVLAQDVYAKDNLPPFPASVKDGYAVRAADGPGDRFIIGESQAGEQ   81 (181)
T ss_dssp             EEEHHHHHHHHHHHSCCC----CEEEEEGGGCTTCBBSSCEECSSCBSSSCEESSSEEEECGGGCSCEEEEEEECCTTSC
T ss_pred             CCcHHHHHHHHHhcCCCC----CcEEEEHHHcCCCceeeeeecCCCCCcchhhhhhhheeehhhccccccccceeccCCC
Confidence            789999999999988766    8999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCCCCCCCCeEEEccCCCCCCCCCEEEEeeeeeeccCCCCchhhhhhhcCCCCCcccccccccceecccccccCCCCce
Q psy8230          81 KSASPLKSSQCYRINTGAPIPPGADSVVQVEDTELSKGKDGEEVEIKILKTPTKGQDIRVKDSVVQVEDTELTKGKDGEE  160 (251)
Q Consensus        81 ~~~~~l~~g~~v~I~TGapiP~gaDaVV~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  160 (251)
                       ....+++|+|+||||||+||+|||||||+|+|++.++.+.                                   ..++
T Consensus        82 -~~~~l~~g~av~I~TGa~lP~gaDaVV~~E~~~~~~~~~~-----------------------------------~~~~  125 (181)
T d2ftsa2          82 -PTQTVMPGQVMRVTTGAPIPCGADAVVQVEDTELIRESDD-----------------------------------GTEE  125 (181)
T ss_dssp             -CCCCCCTTEEEEECTTCBCCTTCCEEEEGGGEEEEEESTT-----------------------------------SSCE
T ss_pred             -ccccccCceEEEcccCcccccccceEEEeeeeEEeccccc-----------------------------------cccc
Confidence             6778999999999999999999999999999987643111                                   1134


Q ss_pred             eEEEEecCCCCCCCeecCcccccCCCEEecCCCeeCHHHHHHHHHcCCCeEEEec
Q psy8230         161 VEIKILKTPTKGQDIRVKGIDIRKGATILEEGNLIGPPELGLLASVGVTSITVYK  215 (251)
Q Consensus       161 ~~i~i~~~~~~g~nIr~~G~Di~~G~~ll~~G~~I~p~~i~lLas~Gi~~V~V~~  215 (251)
                      .+|+|.+++++|+|||.+|||+++|++|+++|++|+|.++++||++|+.+|+|||
T Consensus       126 ~~i~i~~~~~~g~~Ir~~GeD~~~G~~ll~~G~~i~p~~i~~Las~Gi~~V~V~r  180 (181)
T d2ftsa2         126 LEVRILVQARPGQDIRPIGHDIKRGECVLAKGTHMGPSEIGLLATVGVTEVEVNK  180 (181)
T ss_dssp             EEEEECSCCCTTTTEECTTSSBCTTCEEECTTCBCCHHHHHHHHHHTCCEEEEEC
T ss_pred             cceEEeccccCCCccccchhccCCCCEEECCCCCcCHHHHHHHHHCCCCeEEEEe
Confidence            5789999999999999999999999999999999999999999999999999997
>d1uz5a2 b.103.1.1 (A:5-180) Molybdenum cofactor biosynthesis protein MoeA, N-terminal and linker domains {Archaeon Pyrococcus horikoshii, PH0582 [TaxId: 53953]} Back     information, alignment and structure
>d2nqra2 b.103.1.1 (A:7-177) Molybdenum cofactor biosynthesis protein MoeA, N-terminal and linker domains {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1wu2a2 b.103.1.1 (A:6-180) Molybdenum cofactor biosynthesis protein MoeA, N-terminal and linker domains {Pyrococcus horikoshii, PH1647 [TaxId: 53953]} Back     information, alignment and structure