Psyllid ID: psy8232

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------25
MTGDQILNFLSSITFIGQPAEVYKFGPQLWMFGVSCFFVIPIVGYIFVPFFQKNNFTSAYQYFGERFSRNLQLLASTMFTVQMVLYLALVLYAPAMALHQVTGLNTMMVVSVMFLVCIFYTTIGGMKAVVWTDSFQVVVLYFAMFAILCKGTLDIGGFSVVWQRNAAYNRTTLLSWNPDPTERYSIWSALFGSAFLHIVFYGGNQLQIQRYLTVDSAAKARQIDYDQMIMDDNIDVIHVMIKYVVTTLT
cEEHHHHHHHHHHHHHcccccHHcccHHHHHHHHHHHHHHHHHHHEEEcEEEccccccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHEEEEEcccccEEEEEHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
ccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHEHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHccccEEEccccccccEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEHcc
MTGDQILNFLSSItfigqpaevykfgpqlwmfgvscffvipivgyifvpffqknnftsAYQYFGERFSRNLQLLASTMFTVQMVLYLALVLYAPAMALHQVTGLNTMMVVSVMFLVCIFYTTIGGMKAVVWTDSFQVVVLYFAMFAILCKGTLDIGGFSVVWQRNAAYNRttllswnpdpterySIWSALFGSAFLHIVFYGGNQLQIQRYLTVDSAAKArqidydqmimddNIDVIHVMIKYVVTTLT
MTGDQILNFLSSITFIGQPAEVYKFGPQLWMFGVSCFFVIPIVGYIFVPFFQKNNFTSAYQYFGERFSRNLQLLASTMFTVQMVLYLALVLYAPAMALHQVTGLNTMMVVSVMFLVCIFYTTIGGMKAVVWTDSFQVVVLYFAMFAILCKGTLDIGGFSVVWQRNAAYNrttllswnpdPTERYSIWSALFGSAFLHIVFYGGNQLQIQRYLTVDSAAKARQIDYDQMIMDDNIDVIHVMIKYVVTTLT
MTGDQILNFLSSITFIGQPAEVYKFGPQLWMFGVSCFFVIPIVGYIFVPFFQKNNFTSAYQYFGERFSRNLQLLASTMFTVQmvlylalvlyapamalHQVTGLNTMMVVSVMFLVCIFYTTIGGMKAVVWTDSFQVVVLYFAMFAILCKGTLDIGGFSVVWQRNAAYNRTTLLSWNPDPTERYSIWSALFGSAFLHIVFYGGNQLQIQRYLTVDSAAKARQIDYDQMIMDDNIDVIHVMIKYVVTTLT
*****ILNFLSSITFIGQPAEVYKFGPQLWMFGVSCFFVIPIVGYIFVPFFQKNNFTSAYQYFGERFSRNLQLLASTMFTVQMVLYLALVLYAPAMALHQVTGLNTMMVVSVMFLVCIFYTTIGGMKAVVWTDSFQVVVLYFAMFAILCKGTLDIGGFSVVWQRNAAYNRTTLLSWNPDPTERYSIWSALFGSAFLHIVFYGGNQLQIQRYLTVDSAAKARQIDYDQMIMDDNIDVIHVMIKYVVTT**
MTGDQILNFLSSITFIGQPAEVYKFGPQLWMFGVSCFFVIPIVGYIFVPFFQKNNFTSAYQYFGERFSRNLQLLASTMFTVQMVLYLALVLYAPAMALHQVTGLNTMMVVSVMFLVCIFYTTIGGMKAVVWTDSFQVVVLYFAMFAILCKGTLDIGGFSVVWQRNAAYNRTTLLSWNPDPTERYSIWSALFGSAFLHIVFYGGNQLQIQRYLTVDSAAKARQIDYDQMIMDDNIDVIHVMIKYVVTTLT
MTGDQILNFLSSITFIGQPAEVYKFGPQLWMFGVSCFFVIPIVGYIFVPFFQKNNFTSAYQYFGERFSRNLQLLASTMFTVQMVLYLALVLYAPAMALHQVTGLNTMMVVSVMFLVCIFYTTIGGMKAVVWTDSFQVVVLYFAMFAILCKGTLDIGGFSVVWQRNAAYNRTTLLSWNPDPTERYSIWSALFGSAFLHIVFYGGNQLQIQRYLTVDSAAKARQIDYDQMIMDDNIDVIHVMIKYVVTTLT
*TGDQILNFLSSITFIGQPAEVYKFGPQLWMFGVSCFFVIPIVGYIFVPFFQKNNFTSAYQYFGERFSRNLQLLASTMFTVQMVLYLALVLYAPAMALHQVTGLNTMMVVSVMFLVCIFYTTIGGMKAVVWTDSFQVVVLYFAMFAILCKGTLDIGGFSVVWQRNAAYNRTTLLSWNPDPTERYSIWSALFGSAFLHIVFYGGNQLQIQRYLTVDSAAKARQIDYDQMIMDDNIDVIHVMIKYVVTTLT
ooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoo
iiiiiHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooo
ooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MTGDQILNFLSSITFIGQPAEVYKFGPQLWMFGVSCFFVIPIVGYIFVPFFQKNNFTSAYQYFGERFSRNLQLLASTMFTVQMVLYLALVLYAPAMALHQVTGLNTMMVVSVMFLVCIFYTTIGGMKAVVWTDSFQVVVLYFAMFAILCKGTLDIGGFSVVWQRNAAYNRTTLLSWNPDPTERYSIWSALFGSAFLHIVFYGGNQLQIQRYLTVDSAAKARQIDYDQMIMDDNIDVIHVMIKYVVTTLT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query249 2.2.26 [Sep-21-2011]
Q9Y289 635 Sodium-dependent multivit yes N/A 0.855 0.335 0.375 7e-44
O70247 634 Sodium-dependent multivit yes N/A 0.855 0.335 0.370 6e-43
Q5U4D8 634 Sodium-dependent multivit yes N/A 0.855 0.335 0.370 8e-43
Q9XT77 636 Sodium-dependent multivit yes N/A 0.855 0.334 0.366 1e-42
Q3ZMH1 610 Sodium-coupled monocarbox no N/A 0.891 0.363 0.364 1e-41
Q49B93 619 Sodium-coupled monocarbox no N/A 0.859 0.345 0.373 1e-40
Q8N695 610 Sodium-coupled monocarbox no N/A 0.851 0.347 0.388 2e-40
Q8BYF6 611 Sodium-coupled monocarbox no N/A 0.851 0.346 0.384 2e-39
Q1EHB4 618 Sodium-coupled monocarbox no N/A 0.859 0.346 0.369 2e-39
Q7T384 623 Sodium-coupled monocarbox no N/A 0.859 0.343 0.369 3e-39
>sp|Q9Y289|SC5A6_HUMAN Sodium-dependent multivitamin transporter OS=Homo sapiens GN=SLC5A6 PE=2 SV=2 Back     alignment and function desciption
 Score =  177 bits (449), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 80/213 (37%), Positives = 130/213 (61%)

Query: 8   NFLSSITFIGQPAEVYKFGPQLWMFGVSCFFVIPIVGYIFVPFFQKNNFTSAYQYFGERF 67
            F S++  +G P+E+Y+FG Q W  G   F  + I  +IF+P F + + TSAY+Y   RF
Sbjct: 78  TFQSAVAILGVPSEIYRFGTQYWFLGCCYFLGLLIPAHIFIPVFYRLHLTSAYEYLELRF 137

Query: 68  SRNLQLLASTMFTVQMVLYLALVLYAPAMALHQVTGLNTMMVVSVMFLVCIFYTTIGGMK 127
           ++ +++  +  F  QMV+Y+ +VLYAP++AL+ VTG +  + V  + +VC  YT +GG+K
Sbjct: 138 NKTVRVCGTVTFIFQMVIYMGVVLYAPSLALNAVTGFDLWLSVLALGIVCTVYTALGGLK 197

Query: 128 AVVWTDSFQVVVLYFAMFAILCKGTLDIGGFSVVWQRNAAYNRTTLLSWNPDPTERYSIW 187
           AV+WTD FQ +V++    A++  G+  +GG   VW   + + R +    +PDP  R++ W
Sbjct: 198 AVIWTDVFQTLVMFLGQLAVIIVGSAKVGGLGRVWAVASQHGRISGFELDPDPFVRHTFW 257

Query: 188 SALFGSAFLHIVFYGGNQLQIQRYLTVDSAAKA 220
           +  FG  F+ +  YG NQ Q+QRYL+  +   A
Sbjct: 258 TLAFGGVFMMLSLYGVNQAQVQRYLSSRTEKAA 290
Transports pantothenate, biotin and lipoate in the presence of sodium.
Homo sapiens (taxid: 9606)
>sp|O70247|SC5A6_RAT Sodium-dependent multivitamin transporter OS=Rattus norvegicus GN=Slc5a6 PE=2 SV=1 Back     alignment and function description
>sp|Q5U4D8|SC5A6_MOUSE Sodium-dependent multivitamin transporter OS=Mus musculus GN=Slc5a6 PE=2 SV=2 Back     alignment and function description
>sp|Q9XT77|SC5A6_RABIT Sodium-dependent multivitamin transporter OS=Oryctolagus cuniculus GN=SLC5A6 PE=2 SV=1 Back     alignment and function description
>sp|Q3ZMH1|SC5A8_DANRE Sodium-coupled monocarboxylate transporter 1 OS=Danio rerio GN=slc5a8 PE=1 SV=1 Back     alignment and function description
>sp|Q49B93|SC5AC_MOUSE Sodium-coupled monocarboxylate transporter 2 OS=Mus musculus GN=Slc5a12 PE=1 SV=1 Back     alignment and function description
>sp|Q8N695|SC5A8_HUMAN Sodium-coupled monocarboxylate transporter 1 OS=Homo sapiens GN=SLC5A8 PE=1 SV=2 Back     alignment and function description
>sp|Q8BYF6|SC5A8_MOUSE Sodium-coupled monocarboxylate transporter 1 OS=Mus musculus GN=Slc5a8 PE=1 SV=1 Back     alignment and function description
>sp|Q1EHB4|SC5AC_HUMAN Sodium-coupled monocarboxylate transporter 2 OS=Homo sapiens GN=SLC5A12 PE=2 SV=2 Back     alignment and function description
>sp|Q7T384|SC5AC_DANRE Sodium-coupled monocarboxylate transporter 2 OS=Danio rerio GN=slc5a12 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query249
261873667 415 potassium/glucose cotransporter [Dysderc 0.875 0.525 0.633 2e-78
242016888 594 sodium/iodide cotransporter, putative [P 0.875 0.367 0.577 2e-72
242016890 604 sodium/solute symporter, putative [Pedic 0.855 0.352 0.539 2e-65
321456488 636 hypothetical protein DAPPUDRAFT_330864 [ 0.871 0.341 0.488 1e-57
321475597 655 hypothetical protein DAPPUDRAFT_312878 [ 0.871 0.331 0.460 6e-53
260807379 550 hypothetical protein BRAFLDRAFT_57203 [B 0.863 0.390 0.437 2e-50
405976802 663 Sodium-coupled monocarboxylate transport 0.875 0.328 0.412 2e-50
391336945 610 PREDICTED: sodium-coupled monocarboxylat 0.859 0.350 0.439 3e-49
241703281278 sodium-dependent multivitamin transporte 0.859 0.769 0.439 1e-48
260801931 534 hypothetical protein BRAFLDRAFT_164012 [ 0.875 0.408 0.435 6e-48
>gi|261873667|gb|ACY03365.1| potassium/glucose cotransporter [Dysdercus peruvianus] Back     alignment and taxonomy information
 Score =  298 bits (762), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 138/218 (63%), Positives = 179/218 (82%)

Query: 6   ILNFLSSITFIGQPAEVYKFGPQLWMFGVSCFFVIPIVGYIFVPFFQKNNFTSAYQYFGE 65
           + +FLSSIT IGQPAEVY++G Q W+FG++ FF+IPIVGYI VPFF+  N+ SAYQYFGE
Sbjct: 72  LASFLSSITLIGQPAEVYQYGAQQWLFGMATFFIIPIVGYIIVPFFRGKNYYSAYQYFGE 131

Query: 66  RFSRNLQLLASTMFTVQMVLYLALVLYAPAMALHQVTGLNTMMVVSVMFLVCIFYTTIGG 125
           RF+R LQLLAS +FT QM++YLALVLYAPA++++QVTG +TM VV++M+ +CIFYT +GG
Sbjct: 132 RFNRKLQLLASVLFTFQMIIYLALVLYAPALSMNQVTGFSTMTVVTLMYGICIFYTVLGG 191

Query: 126 MKAVVWTDSFQVVVLYFAMFAILCKGTLDIGGFSVVWQRNAAYNRTTLLSWNPDPTERYS 185
           MK VVW D+FQ+VVL+ AM A+L KGT DIGG SVVW+R+  +NRT   +++ D T+RY+
Sbjct: 192 MKGVVWADAFQIVVLFGAMAAVLIKGTSDIGGVSVVWERSKEFNRTNFFNFDFDMTQRYT 251

Query: 186 IWSALFGSAFLHIVFYGGNQLQIQRYLTVDSAAKARQI 223
            WS+  GS FLH+  YGGNQLQIQRYLTV S  +AR++
Sbjct: 252 FWSSFIGSGFLHMSTYGGNQLQIQRYLTVTSCKEARKM 289

Source: Dysdercus peruvianus

Species: Dysdercus peruvianus

Genus: Dysdercus

Family: Pyrrhocoridae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|242016888|ref|XP_002428928.1| sodium/iodide cotransporter, putative [Pediculus humanus corporis] gi|212513744|gb|EEB16190.1| sodium/iodide cotransporter, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|242016890|ref|XP_002428929.1| sodium/solute symporter, putative [Pediculus humanus corporis] gi|212513745|gb|EEB16191.1| sodium/solute symporter, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|321456488|gb|EFX67594.1| hypothetical protein DAPPUDRAFT_330864 [Daphnia pulex] Back     alignment and taxonomy information
>gi|321475597|gb|EFX86559.1| hypothetical protein DAPPUDRAFT_312878 [Daphnia pulex] Back     alignment and taxonomy information
>gi|260807379|ref|XP_002598486.1| hypothetical protein BRAFLDRAFT_57203 [Branchiostoma floridae] gi|229283759|gb|EEN54498.1| hypothetical protein BRAFLDRAFT_57203 [Branchiostoma floridae] Back     alignment and taxonomy information
>gi|405976802|gb|EKC41286.1| Sodium-coupled monocarboxylate transporter 1 [Crassostrea gigas] Back     alignment and taxonomy information
>gi|391336945|ref|XP_003742835.1| PREDICTED: sodium-coupled monocarboxylate transporter 1-like [Metaseiulus occidentalis] Back     alignment and taxonomy information
>gi|241703281|ref|XP_002402957.1| sodium-dependent multivitamin transporter, putative [Ixodes scapularis] gi|215504940|gb|EEC14434.1| sodium-dependent multivitamin transporter, putative [Ixodes scapularis] Back     alignment and taxonomy information
>gi|260801931|ref|XP_002595848.1| hypothetical protein BRAFLDRAFT_164012 [Branchiostoma floridae] gi|229281097|gb|EEN51860.1| hypothetical protein BRAFLDRAFT_164012 [Branchiostoma floridae] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query249
ZFIN|ZDB-GENE-041001-177 625 si:dkey-5g7.3 "si:dkey-5g7.3" 0.835 0.332 0.360 7.4e-37
RGD|1564146 611 Slc5a8 "solute carrier family 0.891 0.363 0.337 1.4e-35
ZFIN|ZDB-GENE-061110-98 610 slc5a8l "solute carrier family 0.891 0.363 0.328 2.4e-35
UNIPROTKB|Q9Y289 635 SLC5A6 "Sodium-dependent multi 0.831 0.325 0.334 2.4e-35
UNIPROTKB|F1SRH7 611 SLC5A8 "Uncharacterized protei 0.883 0.360 0.343 3.1e-35
MGI|MGI:2660847 634 Slc5a6 "solute carrier family 0.863 0.339 0.325 3.9e-35
UNIPROTKB|E2R9T1 636 SLC5A6 "Uncharacterized protei 0.835 0.327 0.326 4e-35
RGD|69648 634 Slc5a6 "solute carrier family 0.863 0.339 0.325 5.1e-35
UNIPROTKB|F1MN65 638 LOC100848651 "Uncharacterized 0.831 0.324 0.325 5.3e-35
UNIPROTKB|F1SED7 638 SLC5A6 "Uncharacterized protei 0.831 0.324 0.325 1.5e-34
ZFIN|ZDB-GENE-041001-177 si:dkey-5g7.3 "si:dkey-5g7.3" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
 Score = 400 (145.9 bits), Expect = 7.4e-37, P = 7.4e-37
 Identities = 75/208 (36%), Positives = 114/208 (54%)

Query:     6 ILNFLSSITFIGQPAEVYKFGPQLWMFGVSCFFVIPIVGYIFVPFFQKNNFTSAYQYFGE 65
             +  F S++  +G P+E+Y +G Q W  G S F  + I  +IF+P F +   +SAY+Y   
Sbjct:    61 LATFQSAVAILGAPSEIYTYGTQYWFLGCSYFLGLLIPAHIFIPVFYRLRLSSAYEYLEL 120

Query:    66 RFSRNLQLLASTMFTVQXXXXXXXXXXXXXXXXHQVTGLNTMMVVSVMFLVCIFYTTIGG 125
             RFS+++++  +  F  Q                + VTG +    V  M LVC  YT +GG
Sbjct:   121 RFSKSVRICGTVTFIFQMVIYMGVVLYAPALALNAVTGFDLWGAVLAMGLVCTLYTALGG 180

Query:   126 MKAVVWTDSFQVVVLYFAMFAILCKGTLDIGGFSVVWQRNAAYNRTTLLSWNPDPTERYS 185
             +KAV+WTD FQ +V++    A++  GT   GG + VW++    +R   L  NPDP ER++
Sbjct:   181 LKAVIWTDVFQTIVMFAGQLAVIVVGTHQAGGIAEVWRKAQNGSRIAGLDLNPDPLERHT 240

Query:   186 IWSALFGSAFLHIVFYGGNQLQIQRYLT 213
              W+   G  FL +  YG NQ Q+QRYL+
Sbjct:   241 FWTLGVGGVFLMLALYGVNQAQVQRYLS 268
GO:0005215 "transporter activity" evidence=IEA
GO:0006810 "transport" evidence=IEA
GO:0016020 "membrane" evidence=IEA
GO:0055085 "transmembrane transport" evidence=IEA
GO:0016021 "integral to membrane" evidence=IEA
RGD|1564146 Slc5a8 "solute carrier family 5 (iodide transporter), member 8" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-061110-98 slc5a8l "solute carrier family 5 (iodide transporter), member 8-like" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q9Y289 SLC5A6 "Sodium-dependent multivitamin transporter" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1SRH7 SLC5A8 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:2660847 Slc5a6 "solute carrier family 5 (sodium-dependent vitamin transporter), member 6" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E2R9T1 SLC5A6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
RGD|69648 Slc5a6 "solute carrier family 5 (sodium-dependent vitamin transporter), member 6" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1MN65 LOC100848651 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1SED7 SLC5A6 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query249
cd11492 522 cd11492, SLC5sbd_NIS-SMVT, Na(+)/iodide (NIS) and 2e-88
cd11504 527 cd11504, SLC5sbd_SMVT, Na(+)/multivitamin cotransp 2e-63
cd10326 477 cd10326, SLC5sbd_NIS-like, Na(+)/iodide (NIS) and 3e-55
cd11505 536 cd11505, SLC5sbd_SMCT, Na(+)/monocarboxylate cotra 1e-54
cd11519 541 cd11519, SLC5sbd_SMCT1, Na(+)/monocarboxylate cotr 2e-54
cd11503 535 cd11503, SLC5sbd_NIS, Na(+)/iodide cotransporter N 1e-51
cd11495 477 cd11495, SLC5sbd_NIS-like_u3, uncharacterized subg 3e-51
cd11520 529 cd11520, SLC5sbd_SMCT2, Na(+)/monocarboxylate cotr 3e-49
cd11494 481 cd11494, SLC5sbd_NIS-like_u2, uncharacterized subg 8e-43
TIGR00813 407 TIGR00813, sss, transporter, SSS family 1e-38
cd11493 479 cd11493, SLC5sbd_NIS-like_u1, uncharacterized subg 5e-31
cd10322 455 cd10322, SLC5sbd, Solute carrier 5 family, sodium/ 7e-27
COG0591 493 COG0591, PutP, Na+/proline symporter [Amino acid t 4e-22
pfam00474 406 pfam00474, SSF, Sodium:solute symporter family 8e-14
cd10325 523 cd10325, SLC5sbd_vSGLT, Vibrio parahaemolyticus Na 3e-13
cd11475 464 cd11475, SLC5sbd_PutP, Na(+)/proline cotransporter 4e-13
cd10328 472 cd10328, SLC5sbd_YidK, uncharacterized SLC5 subfam 1e-11
cd11478 495 cd11478, SLC5sbd_u2, Uncharacterized bacterial sol 3e-11
cd11477 495 cd11477, SLC5sbd_u1, Uncharacterized bacterial sol 4e-11
PRK10484 523 PRK10484, PRK10484, putative transporter; Provisio 5e-09
cd10329 564 cd10329, SLC5sbd_SGLT1-like, Na(+)/glucose cotrans 6e-09
cd11486 635 cd11486, SLC5sbd_SGLT1, Na(+)/glucose cotransporte 1e-08
COG4145 473 COG4145, PanF, Na+/panthothenate symporter [Coenzy 2e-08
cd11487 583 cd11487, SLC5sbd_SGLT2, Na(+)/glucose cotransporte 3e-08
cd11489 604 cd11489, SLC5sbd_SGLT5, Na(+)/glucose cotransporte 2e-07
COG4146 571 COG4146, COG4146, Predicted symporter [General fun 3e-07
cd11474 464 cd11474, SLC5sbd_CHT, Na(+)- and Cl(-)-dependent c 3e-07
COG4147 529 COG4147, DhlC, Predicted symporter [General functi 1e-06
cd11490 602 cd11490, SLC5sbd_SGLT6, Na(+)/chiro-inositol cotra 1e-06
cd10327 472 cd10327, SLC5sbd_PanF, Na(+)/pantothenate cotransp 2e-06
cd11488 605 cd11488, SLC5sbd_SGLT4, Na(+)/glucose cotransporte 6e-06
TIGR02119 471 TIGR02119, panF, sodium/pantothenate symporter 8e-06
cd11491 600 cd11491, SLC5sbd_SMIT, Na(+)/myo-inositol cotransp 1e-05
cd11476 493 cd11476, SLC5sbd_DUR3, Na(+)/urea-polyamine cotran 2e-05
TIGR02121 487 TIGR02121, Na_Pro_sym, sodium/proline symporter 6e-05
PRK15419 502 PRK15419, PRK15419, proline:sodium symporter PutP; 1e-04
PRK09442 483 PRK09442, panF, sodium/panthothenate symporter; Pr 3e-04
cd06857 413 cd06857, SLC5-6-like_sbd, Solute carrier families 4e-04
cd11480 484 cd11480, SLC5sbd_u4, Uncharacterized bacterial sol 8e-04
>gnl|CDD|212061 cd11492, SLC5sbd_NIS-SMVT, Na(+)/iodide (NIS) and Na(+)/multivitamin (SMVT) cotransporters, and related proteins; solute binding domain Back     alignment and domain information 
 Score =  270 bits (693), Expect = 2e-88
 Identities = 103/213 (48%), Positives = 149/213 (69%)

Query: 9   FLSSITFIGQPAEVYKFGPQLWMFGVSCFFVIPIVGYIFVPFFQKNNFTSAYQYFGERFS 68
           F+S+IT +G PAEVY +G Q W+  +S   V PI  YIF+P F     TS Y+Y   RF+
Sbjct: 53  FISAITLLGTPAEVYLYGTQYWLIVISYLIVGPITAYIFLPVFYNLQLTSTYEYLELRFN 112

Query: 69  RNLQLLASTMFTVQMVLYLALVLYAPAMALHQVTGLNTMMVVSVMFLVCIFYTTIGGMKA 128
           R+++LLAS +F +QM+LYL +V+YAPA+AL+QVTG+N  + V ++ +VC FYTT+GG+KA
Sbjct: 113 RSVRLLASLLFILQMLLYLGIVIYAPALALNQVTGINLWISVLIVGIVCTFYTTLGGLKA 172

Query: 129 VVWTDSFQVVVLYFAMFAILCKGTLDIGGFSVVWQRNAAYNRTTLLSWNPDPTERYSIWS 188
           VVWTD FQVVV++  + A++ KGT+D+GG S VW+      R    +++PDPT R++ WS
Sbjct: 173 VVWTDVFQVVVMFGGVLAVIIKGTIDVGGLSEVWEIAEEGGRLEFFNFDPDPTVRHTFWS 232

Query: 189 ALFGSAFLHIVFYGGNQLQIQRYLTVDSAAKAR 221
            + G  F  +  YG NQ Q+QRYL++ S  +A+
Sbjct: 233 LVIGGTFTWLSLYGVNQAQVQRYLSLPSLKQAK 265

NIS (encoded by the SLC5A5 gene) transports I-, and other anions including ClO4-, SCN-, and Br-. SMVT (encoded by the SLC5A6 gene) transports biotin, pantothenic acid and lipoate. This subfamily also includes SMCT1 and -2. SMCT1(encoded by the SLC5A8 gene) is a high-affinity transporter of various monocarboxylates including lactate and pyruvate, short-chain fatty acids, ketone bodies, nicotinate and its structural analogs, pyroglutamate, benzoate and its derivatives, and iodide. SMCT2 (encoded by the SLC5A12 gene) is a low-affinity transporter for short-chain fatty acids, lactate, pyruvate, and nicotinate. This subgroup belongs to the solute carrier 5 (SLC5) transporter family. Length = 522
>gnl|CDD|212073 cd11504, SLC5sbd_SMVT, Na(+)/multivitamin cotransporter SMVT and related proteins; solute-binding domain Back     alignment and domain information
>gnl|CDD|212036 cd10326, SLC5sbd_NIS-like, Na(+)/iodide (NIS) and Na(+)/multivitamin (SMVT) cotransporters, and related proteins; solute binding domain Back     alignment and domain information
>gnl|CDD|212074 cd11505, SLC5sbd_SMCT, Na(+)/monocarboxylate cotransporters SMCT1 and 2 and related proteins; solute-binding domain Back     alignment and domain information
>gnl|CDD|212088 cd11519, SLC5sbd_SMCT1, Na(+)/monocarboxylate cotransporter SMCT1 and related proteins; solute-binding domain Back     alignment and domain information
>gnl|CDD|212072 cd11503, SLC5sbd_NIS, Na(+)/iodide cotransporter NIS and related proteins; solute-binding domain Back     alignment and domain information
>gnl|CDD|212064 cd11495, SLC5sbd_NIS-like_u3, uncharacterized subgroup of the Na(+)/iodide (NIS) cotransporter subfamily; putative solute-binding domain Back     alignment and domain information
>gnl|CDD|212089 cd11520, SLC5sbd_SMCT2, Na(+)/monocarboxylate cotransporter SMCT2 and related proteins; solute-binding domain Back     alignment and domain information
>gnl|CDD|212063 cd11494, SLC5sbd_NIS-like_u2, uncharacterized subgroup of the Na(+)/iodide (NIS) cotransporter subfamily; putative solute-binding domain Back     alignment and domain information
>gnl|CDD|233138 TIGR00813, sss, transporter, SSS family Back     alignment and domain information
>gnl|CDD|212062 cd11493, SLC5sbd_NIS-like_u1, uncharacterized subgroup of the Na(+)/iodide (NIS) cotransporter subfamily; putative solute-binding domain Back     alignment and domain information
>gnl|CDD|212032 cd10322, SLC5sbd, Solute carrier 5 family, sodium/glucose transporters and related proteins; solute-binding domain Back     alignment and domain information
>gnl|CDD|223664 COG0591, PutP, Na+/proline symporter [Amino acid transport and metabolism / General function prediction only] Back     alignment and domain information
>gnl|CDD|109527 pfam00474, SSF, Sodium:solute symporter family Back     alignment and domain information
>gnl|CDD|212035 cd10325, SLC5sbd_vSGLT, Vibrio parahaemolyticus Na(+)/galactose cotransporter (vSGLT) and related proteins; solute binding domain Back     alignment and domain information
>gnl|CDD|212045 cd11475, SLC5sbd_PutP, Na(+)/proline cotransporter PutP and related proteins; solute binding domain Back     alignment and domain information
>gnl|CDD|212038 cd10328, SLC5sbd_YidK, uncharacterized SLC5 subfamily, Escherichia coli YidK-like; solute binding domain Back     alignment and domain information
>gnl|CDD|212048 cd11478, SLC5sbd_u2, Uncharacterized bacterial solute carrier 5 subfamily; putative solute-binding domain Back     alignment and domain information
>gnl|CDD|212047 cd11477, SLC5sbd_u1, Uncharacterized bacterial solute carrier 5 subfamily; putative solute-binding domain Back     alignment and domain information
>gnl|CDD|236699 PRK10484, PRK10484, putative transporter; Provisional Back     alignment and domain information
>gnl|CDD|212039 cd10329, SLC5sbd_SGLT1-like, Na(+)/glucose cotransporter SGLT1 and related proteins; solute binding domain Back     alignment and domain information
>gnl|CDD|212055 cd11486, SLC5sbd_SGLT1, Na(+)/glucose cotransporter SGLT1;solute binding domain Back     alignment and domain information
>gnl|CDD|226625 COG4145, PanF, Na+/panthothenate symporter [Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|212056 cd11487, SLC5sbd_SGLT2, Na(+)/glucose cotransporter SGLT2 and related proteins; solute-binding domain Back     alignment and domain information
>gnl|CDD|212058 cd11489, SLC5sbd_SGLT5, Na(+)/glucose cotransporter SGLT5 and related proteins; solute-binding domain Back     alignment and domain information
>gnl|CDD|226626 COG4146, COG4146, Predicted symporter [General function prediction only] Back     alignment and domain information
>gnl|CDD|212044 cd11474, SLC5sbd_CHT, Na(+)- and Cl(-)-dependent choline cotransporter CHT and related proteins; solute-binding domain Back     alignment and domain information
>gnl|CDD|226627 COG4147, DhlC, Predicted symporter [General function prediction only] Back     alignment and domain information
>gnl|CDD|212059 cd11490, SLC5sbd_SGLT6, Na(+)/chiro-inositol cotransporter SGLT6 and related proteins; solute-binding domain Back     alignment and domain information
>gnl|CDD|212037 cd10327, SLC5sbd_PanF, Na(+)/pantothenate cotransporters: PanF of Escherichia coli and related proteins; solute binding domain Back     alignment and domain information
>gnl|CDD|212057 cd11488, SLC5sbd_SGLT4, Na(+)/glucose cotransporter SGLT4 and related proteins; solute-binding domain Back     alignment and domain information
>gnl|CDD|131174 TIGR02119, panF, sodium/pantothenate symporter Back     alignment and domain information
>gnl|CDD|212060 cd11491, SLC5sbd_SMIT, Na(+)/myo-inositol cotransporter SMIT and related proteins; solute-binding domain Back     alignment and domain information
>gnl|CDD|212046 cd11476, SLC5sbd_DUR3, Na(+)/urea-polyamine cotransporter DUR3, and related proteins; solute-binding domain Back     alignment and domain information
>gnl|CDD|233735 TIGR02121, Na_Pro_sym, sodium/proline symporter Back     alignment and domain information
>gnl|CDD|185317 PRK15419, PRK15419, proline:sodium symporter PutP; Provisional Back     alignment and domain information
>gnl|CDD|236519 PRK09442, panF, sodium/panthothenate symporter; Provisional Back     alignment and domain information
>gnl|CDD|212031 cd06857, SLC5-6-like_sbd, Solute carrier families 5 and 6-like; solute binding domain Back     alignment and domain information
>gnl|CDD|212050 cd11480, SLC5sbd_u4, Uncharacterized bacterial solute carrier 5 subfamily; putative solute-binding domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 249
TIGR00813 407 sss transporter, SSS family. have different number 100.0
PF00474 406 SSF: Sodium:solute symporter family; InterPro: IPR 100.0
PRK09395 551 actP acetate permease; Provisional 100.0
PRK12488 549 acetate permease; Provisional 100.0
TIGR02121 487 Na_Pro_sym sodium/proline symporter. This family c 100.0
TIGR02711 549 symport_actP cation/acetate symporter ActP. Member 100.0
PRK09442 483 panF sodium/panthothenate symporter; Provisional 100.0
PRK10484 523 putative transporter; Provisional 100.0
TIGR03648 552 Na_symport_lg probable sodium:solute symporter, VC 100.0
PRK15419 502 proline:sodium symporter PutP; Provisional 100.0
TIGR02119 471 panF sodium/pantothenate symporter. Pantothenate ( 100.0
KOG2349|consensus 585 100.0
COG0591 493 PutP Na+/proline symporter [Amino acid transport a 100.0
COG4145 473 PanF Na+/panthothenate symporter [Coenzyme metabol 100.0
COG4147 529 DhlC Predicted symporter [General function predict 99.98
COG4146 571 Predicted symporter [General function prediction o 99.94
KOG3761|consensus 591 99.87
KOG2348|consensus 667 99.47
PF03845320 Spore_permease: Spore germination protein; InterPr 98.61
TIGR00912 359 2A0309 spore germination protein (amino acid perme 98.5
TIGR00814 397 stp serine transporter. The HAAAP family includes 98.47
PRK00701 439 manganese transport protein MntH; Reviewed 98.22
PF01566 358 Nramp: Natural resistance-associated macrophage pr 98.22
PF03222 394 Trp_Tyr_perm: Tryptophan/tyrosine permease family; 98.14
TIGR00837 381 araaP aromatic amino acid transport protein. aroma 98.05
PRK11017 404 codB cytosine permease; Provisional 97.93
COG1914 416 MntH Mn2+ and Fe2+ transporters of the NRAMP famil 97.88
TIGR00835 425 agcS amino acid carrier protein. Members of the AG 97.85
TIGR01773 452 GABAperm gamma-aminobutyrate permease. GabP is hig 97.84
COG3949349 Uncharacterized membrane protein [Function unknown 97.84
TIGR01197 390 nramp NRAMP (natural resistance-associated macroph 97.82
PRK15132 403 tyrosine transporter TyrP; Provisional 97.79
COG1457 442 CodB Purine-cytosine permease and related proteins 97.71
PRK10483 414 tryptophan permease; Provisional 97.7
PRK10197 446 gamma-aminobutyrate transporter; Provisional 97.63
COG0814 415 SdaC Amino acid permeases [Amino acid transport an 97.55
PRK10249 458 phenylalanine transporter; Provisional 97.53
TIGR00800 442 ncs1 NCS1 nucleoside transporter family. The NCS1 97.51
PRK11375 484 allantoin permease; Provisional 97.48
PRK10238 456 aromatic amino acid transporter; Provisional 97.47
TIGR03810 468 arg_ornith_anti arginine/ornithine antiporter. Mem 97.47
PF01235 416 Na_Ala_symp: Sodium:alanine symporter family; Inte 97.45
PRK09664 415 tryptophan permease TnaB; Provisional 97.44
TIGR00909 429 2A0306 amino acid transporter. 97.37
PRK11049 469 D-alanine/D-serine/glycine permease; Provisional 97.36
TIGR00905 473 2A0302 transporter, basic amino acid/polyamine ant 97.32
PRK11021 410 putative transporter; Provisional 97.3
TIGR00913 478 2A0310 amino acid permease (yeast). 97.21
PRK10746 461 putative transport protein YifK; Provisional 97.16
TIGR00908 442 2A0305 ethanolamine permease. The three genes used 97.15
PRK10580 457 proY putative proline-specific permease; Provision 97.11
TIGR02358 386 thia_cytX probable hydroxymethylpyrimidine transpo 97.1
PRK11387 471 S-methylmethionine transporter; Provisional 97.03
PRK10836 489 lysine transporter; Provisional 97.03
COG1115 452 AlsT Na+/alanine symporter [Amino acid transport a 97.01
PRK15049 499 L-asparagine permease; Provisional 96.99
PRK10644 445 arginine:agmatin antiporter; Provisional 96.91
PRK10655 438 potE putrescine transporter; Provisional 96.9
COG1113 462 AnsP Gamma-aminobutyrate permease and related perm 96.89
PRK13629 443 threonine/serine transporter TdcC; Provisional 96.86
COG1953 497 FUI1 Cytosine/uracil/thiamine/allantoin permeases 96.65
PF13520 426 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G 96.49
PTZ00206 467 amino acid transporter; Provisional 96.46
PRK10435 435 cadB lysine/cadaverine antiporter; Provisional 96.46
PF02133 440 Transp_cyt_pur: Permease for cytosine/purines, ura 96.34
PRK11357 445 frlA putative fructoselysine transporter; Provisio 96.05
TIGR00906 557 2A0303 cationic amino acid transport permease. 95.92
PRK09950 506 putative transporter; Provisional 95.54
TIGR00796 378 livcs branched-chain amino acid uptake carrier. tr 95.16
TIGR00911 501 2A0308 L-type amino acid transporter. 95.06
COG0531 466 PotE Amino acid transporters [Amino acid transport 93.92
PF02028 485 BCCT: BCCT family transporter; InterPro: IPR000060 93.91
PLN03074 473 auxin influx permease; Provisional 93.01
TIGR00842 453 bcct choline/carnitine/betaine transport. properti 92.75
KOG1303|consensus 437 92.71
PRK03356 504 L-carnitine/gamma-butyrobetaine antiporter; Provis 92.17
PRK09928 679 choline transport protein BetT; Provisional 91.88
PF00324 478 AA_permease: Amino acid permease; InterPro: IPR004 91.87
PF02554376 CstA: Carbon starvation protein CstA; InterPro: IP 91.84
TIGR03428 475 ureacarb_perm permease, urea carboxylase system. A 91.27
PRK15238 496 inner membrane transporter YjeM; Provisional 90.65
KOG1304|consensus 449 90.09
TIGR00930 953 2a30 K-Cl cotransporter. 89.73
TIGR03813 474 put_Glu_GABA_T putative glutamate/gamma-aminobutyr 89.64
COG0833 541 LysP Amino acid transporters [Amino acid transport 87.92
TIGR00910 507 2A0307_GadC glutamate:gamma-aminobutyrate antiport 85.77
COG0733 439 Na+-dependent transporters of the SNF family [Gene 85.24
>TIGR00813 sss transporter, SSS family Back     alignment and domain information 
Probab=100.00  E-value=1.9e-40  Score=299.53  Aligned_cols=245  Identities=24%  Similarity=0.476  Sum_probs=207.7

Q ss_pred             ccceeehhhhhhhhhccchhhhhcchhHHHHHHHHHHHHHHHHHhhhcccccCCccCHHHHHHhhhCh-hHHHHHHHHHH
Q psy8232           2 TGDQILNFLSSITFIGQPAEVYKFGPQLWMFGVSCFFVIPIVGYIFVPFFQKNNFTSAYQYFGERFSR-NLQLLASTMFT   80 (249)
Q Consensus         2 ~~s~~at~~s~~t~~g~~g~~y~~G~~~~~~~~g~~~~~~l~~~~~~~~~rr~~~~T~~e~l~~Ryg~-~~~~~~a~~~~   80 (249)
                      +.|+.||++|+++++|.||.+|++|++++|+.+++.++.++.+.++.|++||.|..|++|++++|||+ ..|.+.++..+
T Consensus        11 ~~s~~at~~s~~t~ig~~~~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~T~~e~l~~Ryg~~~~~~~~~~~~i   90 (407)
T TIGR00813        11 AASLFASYISASQFLGLPGAIYAYGFAIGFYELGALVLLIILGWLFVPIFINNGAYTMPEYLEKRFGKRILRGLSVLSLI   90 (407)
T ss_pred             HHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHhCchHHHHHHHHHHH
Confidence            46889999999999999999999999999999999999999999999999999999999999999995 78999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHHHHHHhhhccCCHHH
Q psy8232          81 VQMVLYLALVLYAPAMALHQVTGLNTMMVVSVMFLVCIFYTTIGGMKAVVWTDSFQVVVLYFAMFAILCKGTLDIGGFSV  160 (249)
Q Consensus        81 l~~~~~~~~q~~~~~~~l~~~~gi~~~~~~~i~~~i~~~Yt~~GGl~~v~~td~iQ~i~~~~~~~~~~~~~~~~~gg~~~  160 (249)
                      +..++|++.|+++.+.+++.++|+|++.++++.++++++|+..||+|+++|||.+|+++|+++.+++.+.++.+.||+++
T Consensus        91 ~~~~~~~~~q~~g~~~il~~~~gi~~~~~~ii~~~i~~~Yt~~GG~~av~~Td~iQ~~i~~~~~i~~~~~~~~~~GG~~~  170 (407)
T TIGR00813        91 LYIFLYMSVDLFSGALLIELITGLDLYLSLLLLGAITILYTVFGGLKAVVWTDTIQAVIMILGTFILPVFAFSEVGGLGT  170 (407)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999998888888888999999


Q ss_pred             HHHHhhhcCc-----cccccCCCCCCCcchhHHH-HHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHHHHHHhhHHHHH
Q psy8232         161 VWQRNAAYNR-----TTLLSWNPDPTERYSIWSA-LFGSAFLHIVFYGGNQLQIQRYLTVDSAAKARQIDYDQMIMDDNI  234 (249)
Q Consensus       161 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~qr~~aak~~k~ar~~~~~~~~~~~~~  234 (249)
                      +.+++++.++     .+.++...++......|.. .++........+ .+|+++||++++||+|++||+..++.++..++
T Consensus       171 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~~~qR~~a~ks~~~~r~~~~~~~~~~~~~  249 (407)
T TIGR00813       171 FVEKASQAAPTNPSPDDLYDFFRDPSTSDLPWGAGVFGLPHVALWYW-TNQVIVQRCLAAKSAKHAKKGCLISGVLKLLP  249 (407)
T ss_pred             HHHHHHhcCCCccchhhhccCCCCCcccCCChHHHHhChHHHHHHHh-cCHHHhhHHHhcCCHHHHHHhHHHHHHHHHHH
Confidence            9998877543     1112221222211223321 122111112223 68999999999999999999999999999999


Q ss_pred             HHHHHhhhhhhhc
Q psy8232         235 DVIHVMIKYVVTT  247 (249)
Q Consensus       235 ~~~~~~iG~~~~~  247 (249)
                      .+++.++|+.+..
T Consensus       250 ~~~~~l~G~~a~~  262 (407)
T TIGR00813       250 MFGAVLPGLIARA  262 (407)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998753

have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells Back     alignment and domain information
>PRK09395 actP acetate permease; Provisional Back     alignment and domain information
>PRK12488 acetate permease; Provisional Back     alignment and domain information
>TIGR02121 Na_Pro_sym sodium/proline symporter Back     alignment and domain information
>TIGR02711 symport_actP cation/acetate symporter ActP Back     alignment and domain information
>PRK09442 panF sodium/panthothenate symporter; Provisional Back     alignment and domain information
>PRK10484 putative transporter; Provisional Back     alignment and domain information
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily Back     alignment and domain information
>PRK15419 proline:sodium symporter PutP; Provisional Back     alignment and domain information
>TIGR02119 panF sodium/pantothenate symporter Back     alignment and domain information
>KOG2349|consensus Back     alignment and domain information
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only] Back     alignment and domain information
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism] Back     alignment and domain information
>COG4147 DhlC Predicted symporter [General function prediction only] Back     alignment and domain information
>COG4146 Predicted symporter [General function prediction only] Back     alignment and domain information
>KOG3761|consensus Back     alignment and domain information
>KOG2348|consensus Back     alignment and domain information
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>TIGR00912 2A0309 spore germination protein (amino acid permease) Back     alignment and domain information
>TIGR00814 stp serine transporter Back     alignment and domain information
>PRK00701 manganese transport protein MntH; Reviewed Back     alignment and domain information
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2 Back     alignment and domain information
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>TIGR00837 araaP aromatic amino acid transport protein Back     alignment and domain information
>PRK11017 codB cytosine permease; Provisional Back     alignment and domain information
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00835 agcS amino acid carrier protein Back     alignment and domain information
>TIGR01773 GABAperm gamma-aminobutyrate permease Back     alignment and domain information
>COG3949 Uncharacterized membrane protein [Function unknown] Back     alignment and domain information
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters Back     alignment and domain information
>PRK15132 tyrosine transporter TyrP; Provisional Back     alignment and domain information
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK10483 tryptophan permease; Provisional Back     alignment and domain information
>PRK10197 gamma-aminobutyrate transporter; Provisional Back     alignment and domain information
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PRK10249 phenylalanine transporter; Provisional Back     alignment and domain information
>TIGR00800 ncs1 NCS1 nucleoside transporter family Back     alignment and domain information
>PRK11375 allantoin permease; Provisional Back     alignment and domain information
>PRK10238 aromatic amino acid transporter; Provisional Back     alignment and domain information
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter Back     alignment and domain information
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups Back     alignment and domain information
>PRK09664 tryptophan permease TnaB; Provisional Back     alignment and domain information
>TIGR00909 2A0306 amino acid transporter Back     alignment and domain information
>PRK11049 D-alanine/D-serine/glycine permease; Provisional Back     alignment and domain information
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family Back     alignment and domain information
>PRK11021 putative transporter; Provisional Back     alignment and domain information
>TIGR00913 2A0310 amino acid permease (yeast) Back     alignment and domain information
>PRK10746 putative transport protein YifK; Provisional Back     alignment and domain information
>TIGR00908 2A0305 ethanolamine permease Back     alignment and domain information
>PRK10580 proY putative proline-specific permease; Provisional Back     alignment and domain information
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX Back     alignment and domain information
>PRK11387 S-methylmethionine transporter; Provisional Back     alignment and domain information
>PRK10836 lysine transporter; Provisional Back     alignment and domain information
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism] Back     alignment and domain information
>PRK15049 L-asparagine permease; Provisional Back     alignment and domain information
>PRK10644 arginine:agmatin antiporter; Provisional Back     alignment and domain information
>PRK10655 potE putrescine transporter; Provisional Back     alignment and domain information
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PRK13629 threonine/serine transporter TdcC; Provisional Back     alignment and domain information
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A Back     alignment and domain information
>PTZ00206 amino acid transporter; Provisional Back     alignment and domain information
>PRK10435 cadB lysine/cadaverine antiporter; Provisional Back     alignment and domain information
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines Back     alignment and domain information
>PRK11357 frlA putative fructoselysine transporter; Provisional Back     alignment and domain information
>TIGR00906 2A0303 cationic amino acid transport permease Back     alignment and domain information
>PRK09950 putative transporter; Provisional Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>TIGR00911 2A0308 L-type amino acid transporter Back     alignment and domain information
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom Back     alignment and domain information
>PLN03074 auxin influx permease; Provisional Back     alignment and domain information
>TIGR00842 bcct choline/carnitine/betaine transport Back     alignment and domain information
>KOG1303|consensus Back     alignment and domain information
>PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional Back     alignment and domain information
>PRK09928 choline transport protein BetT; Provisional Back     alignment and domain information
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex Back     alignment and domain information
>TIGR03428 ureacarb_perm permease, urea carboxylase system Back     alignment and domain information
>PRK15238 inner membrane transporter YjeM; Provisional Back     alignment and domain information
>KOG1304|consensus Back     alignment and domain information
>TIGR00930 2a30 K-Cl cotransporter Back     alignment and domain information
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter Back     alignment and domain information
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter Back     alignment and domain information
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query249
2xq2_A 593 Structure Of The K294a Mutant Of Vsglt Length = 593 2e-06
2xq2_B 593 Structure Of The K294a Mutant Of Vsglt Length = 593 3e-06
3dh4_A 530 Crystal Structure Of SodiumSUGAR SYMPORTER WITH BOU 3e-06
>pdb|2XQ2|A Chain A, Structure Of The K294a Mutant Of Vsglt Length = 593 Back     alignment and structure 
Iteration: 1

 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/225 (24%), Positives = 90/225 (40%), Gaps = 16/225 (7%)
Query: 10  LSSITFIGQPAEVYKFGPQL----WMFGVSCFFVIPIVGYIFVPFFQKNNFTSAYQYFGE 65
           +S+  FIG     Y  G  +    WM  ++      IVG  F+P F +    +  ++  +
Sbjct: 65  ISAEQFIGMSGSGYSIGLAIASYEWMSAITLI----IVGKYFLPIFIEKGIYTIPEFVEK 120
Query: 66  RFSRNLQ-LLASTMFTVQXXXXXXXXXXXXXXXXHQVTGLNTMMVVSVMFLVCIFYTTIG 124
           RF++ L+ +LA    ++                   + G+  M  +  + L  + Y+  G
Sbjct: 121 RFNKKLKTILAVFWISLYIFVNLTSVLYLGGLALETILGIPLMYSILGLALFALVYSIYG 180
Query: 125 GMKAVVWTDSFQVVVLYFAMF-----AILCKGTLD--IGGFSVVWQRNAAYNRTTLLSWN 177
           G+ AVVWTD  QV  L    F     A+   G  D    G S +      +    L   N
Sbjct: 181 GLSAVVWTDVIQVFFLVLGGFMTTYMAVSFIGGTDGWFAGVSKMVDAAPGHFEMILDQSN 240
Query: 178 PDPTERYSIWSALFGSAFLHIVFYGGNQLQIQRYLTVDSAAKARQ 222
           P       I   + G    ++ ++G NQ  IQR L   S ++A++
Sbjct: 241 PQYMNLPGIAVLIGGLWVANLYYWGFNQYIIQRTLAAKSVSEAQK 285
>pdb|2XQ2|B Chain B, Structure Of The K294a Mutant Of Vsglt Length = 593 Back     alignment and structure
>pdb|3DH4|A Chain A, Crystal Structure Of SodiumSUGAR SYMPORTER WITH BOUND GALACTOSE FROM Vibrio Parahaemolyticus Length = 530 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query249
2xq2_A 593 Sodium/glucose cotransporter; transport protein, i 3e-46
3dh4_A 530 Sodium/glucose cotransporter; membrane protein, sy 4e-46
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A Length = 593 Back     alignment and structure
 Score =  161 bits (408), Expect = 3e-46
 Identities = 56/224 (25%), Positives = 93/224 (41%), Gaps = 8/224 (3%)

Query: 6   ILNFLSSITFIGQPAEVYKFGPQLWMFGVSCFFVIPIVGYIFVPFFQKNNFTSAYQYFGE 65
           I   +S+  FIG     Y  G  +  +       + IVG  F+P F +    +  ++  +
Sbjct: 61  IAANISAEQFIGMSGSGYSIGLAIASYEWMSAITLIIVGKYFLPIFIEKGIYTIPEFVEK 120

Query: 66  RFSRNLQLLASTMFTV-QMVLYLALVLYAPAMALHQVTGLNTMMVVSVMFLVCIFYTTIG 124
           RF++ L+ + +  +    + + L  VLY   +AL  + G+  M  +  + L  + Y+  G
Sbjct: 121 RFNKKLKTILAVFWISLYIFVNLTSVLYLGGLALETILGIPLMYSILGLALFALVYSIYG 180

Query: 125 GMKAVVWTDSFQVVVLYFAMFAILCKGTLDIGG-------FSVVWQRNAAYNRTTLLSWN 177
           G+ AVVWTD  QV  L    F         IGG        S +      +    L   N
Sbjct: 181 GLSAVVWTDVIQVFFLVLGGFMTTYMAVSFIGGTDGWFAGVSKMVDAAPGHFEMILDQSN 240

Query: 178 PDPTERYSIWSALFGSAFLHIVFYGGNQLQIQRYLTVDSAAKAR 221
           P       I   + G    ++ ++G NQ  IQR L   S ++A+
Sbjct: 241 PQYMNLPGIAVLIGGLWVANLYYWGFNQYIIQRTLAAKSVSEAQ 284
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus} Length = 530 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query249
3dh4_A 530 Sodium/glucose cotransporter; membrane protein, sy 100.0
2xq2_A 593 Sodium/glucose cotransporter; transport protein, i 100.0
2jln_A 501 MHP1; hydantoin, transporter, membrane protein, nu 98.61
3l1l_A 445 Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC 98.18
3gia_A 444 Uncharacterized protein MJ0609; membrane protein, 97.39
2wsw_A 509 BCCT family betaine/carnitine/choline transporter; 95.27
4djk_A 511 Probable glutamate/gamma-aminobutyrate antiporter; 93.78
4ain_A 539 Glycine betaine transporter BETP; membrane protein 93.39
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus} Back     alignment and structure
Probab=100.00  E-value=2.1e-38  Score=293.40  Aligned_cols=244  Identities=22%  Similarity=0.334  Sum_probs=192.6

Q ss_pred             ccceeehhhhhhhhhccchhhhhcchhHHHHHHHHHHHHHHHHHhhhcccccCCccCHHHHHHhhhChhHHHHHHHHHHH
Q psy8232           2 TGDQILNFLSSITFIGQPAEVYKFGPQLWMFGVSCFFVIPIVGYIFVPFFQKNNFTSAYQYFGERFSRNLQLLASTMFTV   81 (249)
Q Consensus         2 ~~s~~at~~s~~t~~g~~g~~y~~G~~~~~~~~g~~~~~~l~~~~~~~~~rr~~~~T~~e~l~~Ryg~~~~~~~a~~~~l   81 (249)
                      +.|+.||++|+++++|.||.+|++|+.+.++.+...++..+.+.++.|++||.|..|+||++|+|||++.|.+.+++.++
T Consensus        28 ~~s~~at~~Sa~~~lG~~g~~y~~G~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~T~~e~l~~Rfg~~~~~~~a~~~l~  107 (530)
T 3dh4_A           28 GASLIAANISAEQFIGMSGSGYSIGLAIASYEWMSAITLIIVGKYFLPIFIEKGIYTIPEFVEKRFNKKLKTILAVFWIS  107 (530)
T ss_dssp             HHHHHHHHCSHHHHTHHHHHHHHTCGGGHHHHHHHHHHHHHHHHHTHHHHHHTTCCSHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHcCcHHHHHHHHHHHH
Confidence            46889999999999999999999999988777777788888888899999999999999999999999999998887765


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHHHHHHhhhccCCHHH
Q psy8232          82 -QMVLYLALVLYAPAMALHQVTGLNTMMVVSVMFLVCIFYTTIGGMKAVVWTDSFQVVVLYFAMFAILCKGTLDIGGFSV  160 (249)
Q Consensus        82 -~~~~~~~~q~~~~~~~l~~~~gi~~~~~~~i~~~i~~~Yt~~GGl~~v~~td~iQ~i~~~~~~~~~~~~~~~~~gg~~~  160 (249)
                       ..+.+++.|+++.+.+++.++|+|++.++++.++++++||.+||+|+++|||.+|+++|+++.+++.+.++.+.||.++
T Consensus       108 ~~~~~~~~~~l~~~~~~~~~~~Gi~~~~~i~i~~~i~~~Yt~~GGl~aV~~TD~iQ~~im~~g~~~v~~~~~~~~Gg~~~  187 (530)
T 3dh4_A          108 LYIFVNLTSVLYLGGLALETILGIPLMYSILGLALFALVYSIYGGLSAVVWTDVIQVFFLVLGGFMTTYMAVSFIGGTDG  187 (530)
T ss_dssp             HHHHTHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTC------CCSHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhh
Confidence             5667889999999999999999999999999999999999999999999999999999999998888888877765543


Q ss_pred             HH---HHhhhcCccccccC--CC-CCC-CcchhHHHHH-HHHHHHHHHhcCChHHHHHHHhcCCHHHHHHHHHHHhhHHH
Q psy8232         161 VW---QRNAAYNRTTLLSW--NP-DPT-ERYSIWSALF-GSAFLHIVFYGGNQLQIQRYLTVDSAAKARQIDYDQMIMDD  232 (249)
Q Consensus       161 ~~---~~~~~~~~~~~~~~--~~-~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~qr~~aak~~k~ar~~~~~~~~~~~  232 (249)
                      +.   +++.++++ +.++.  ++ ++. .....+...+ +.++.++..++.|||++||++++||+|++||+.++++.+..
T Consensus       188 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~g~~q~i~qR~laaks~k~ar~~~~~~~~~~~  266 (530)
T 3dh4_A          188 WFAGVSKMVDAAP-GHFEMILDQSNPQYMNLPGIAVLIGGLWVANLYYWGFNQYIIQRTLAAKSVSEAQKGIVFAAFLKL  266 (530)
T ss_dssp             HHHHHHHHHHHCG-GGGCSSCCSSSSGGGGSCTTHHHHSTHHHHHHHHTTTTCHHHHHHHSSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCc-hhcccccCCCCccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            32   23322222 11211  11 111 0111122233 33455677888899999999999999999999999999888


Q ss_pred             HHHHHHHhhhhhhh
Q psy8232         233 NIDVIHVMIKYVVT  246 (249)
Q Consensus       233 ~~~~~~~~iG~~~~  246 (249)
                      ++.++.+++|+++.
T Consensus       267 ~~~~~~~~~Gl~a~  280 (530)
T 3dh4_A          267 IVPFLVVLPGIAAY  280 (530)
T ss_dssp             HGGGTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            88888888888764
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A Back     alignment and structure
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A Back     alignment and structure
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Back     alignment and structure
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Back     alignment and structure
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A* Back     alignment and structure
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Back     alignment and structure
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00