Psyllid ID: psy8243

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620----
MVYSEYVPGPRAMLGLPKSPSFHSGLDLLADATTATPTAPLPSSAAPPEFPATNPFTLAAIKQSIIDFNLYSDISDMSSTEGESDDSALMFAGMQLPSLLAYPISLLYCSLPIYSNPIQSILFADASSEHRDELFVQKIRQCCVLFDFVQDPLSELKWKEVKRTALLEMVEYLTAQDVHISEAIYPEAVNMVRLYLVAYPISILYCSIPIYSNPIHSILFADASSEHRDELFVQKIRQCCVLFDFVQDPLSELKWKEVKRTALLEMVEYLTAQDVHISEAIYPEAVNMVRLYLVFLESPDFQPNIAKKYIDQKFVLQLLDLFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKDEHKFFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDPSLTEPVVKCLLKFWPKTHSPKESVVYSQVMFLNELEEILDVIEPAEFQKVMVPLFHQIAKCVSSSHFQVAERALYYWNNEYFMNLITDNATVIVPIMFPALYRNSKTHWNKEKERMRDRDLTWINIGEKERMRDRDLTWSRVEALAMKNPHYKPSLCNSSSSSQEYLGGEGEEGDGSLDREKIENEAYEIFKVI
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHcccccccHHHHccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccHHHHHHHHHcccccHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHcc
ccEcccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccHccccHHHHHHHHHHHHHHccEEEEccccccHHcHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcEEEEEccccccHHHcHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccccEHHcccHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcc
mvyseyvpgpramlglpkspsfhsgldlladattatptaplpssaappefpatnpftLAAIKQSIIDFnlysdisdmsstegesddsaLMFAGMQlpsllaypisllycslpiysnpiqsilfadassehrDELFVQKIRQCCVlfdfvqdplselkwKEVKRTALLEMVEYLTAQdvhiseaiyPEAVNMVRLYLVAYPISilycsipiysnpihsilfadassehrDELFVQKIRQCCVlfdfvqdplselkwKEVKRTALLEMVEYLTAQdvhiseaiyPEAVNMVRLYLVFlespdfqpniakkYIDQKFVLQLLdlfdsedprerDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIingfalplkdeHKFFLLKVLLplhkvkslsvyhpqLAYCVVQFlekdpsltepVVKCLLkfwpkthspkesVVYSQVMFLNELEEILdviepaefqkVMVPLFHQIAKCVSSSHFQVAERALYYWNNEYFMNLItdnatvivpimfpalyrnskthwnkekermrdrdltwinigekermrdrdlTWSRVEALAmknphykpslcnsssssqeylggegeegdgsldreKIENEAYEIFKVI
MVYSEYVPGPRAMLGLPKSPSFHSGLDLLADATTATPTAPLPSSAAPPEFPATNPFTLAAIKQSIIDFNLYSDISDMSSTEGESDDSALMFAGMQLPSLLAYPISLLYCSLPIYSNPIQSILFADASSEHRDELFVQKIRQCCVLFDfvqdplselkWKEVKRTALLEMVEYLTAQDVHISEAIYPEAVNMVRLYLVAYPISILYCSIPIYSNPIHSILFADASSEHRDELFVQKIRQCCVLFDfvqdplselkWKEVKRTALLEMVEYLTAQDVHISEAIYPEAVNMVRLYLVFLESPDFQPNIAKKYIDQKFVLQLLDLFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKDEHKFFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDPSLTEPVVKCLLKFwpkthspkeSVVYSQVMFLNELEEILDVIEPAEFQKVMVPLFHQIAKCVSSSHFQVAERALYYWNNEYFMNLITDNATVIVPIMFPALYRNSkthwnkekermrdrdltwinigekermrdrdlTWSRVEALAMknphykpslcnssssSQEYLGGEgeegdgsldrekienEAYEIFKVI
MVYSEYVPGPRAMLGLPKSPSFHSGldlladattatptaplpssaappEFPATNPFTLAAIKQSIIDFNLYSDISDMSSTEGESDDSALMFAGMQLPSLLAYPISLLYCSLPIYSNPIQSILFADASSEHRDELFVQKIRQCCVLFDFVQDPLSELKWKEVKRTALLEMVEYLTAQDVHISEAIYPEAVNMVRLYLVAYPISILYCSIPIYSNPIHSILFADASSEHRDELFVQKIRQCCVLFDFVQDPLSELKWKEVKRTALLEMVEYLTAQDVHISEAIYPEAVNMVRLYLVFLESPDFQPNIAKKYIDQKFVLQLLDLFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKDEhkffllkvllplhkvkslsVYHPQLAYCVVQFLEKDPSLTEPVVKCLLKFWPKTHSPKESVVYSQVMFLNELEEILDVIEPAEFQKVMVPLFHQIAKCVSSSHFQVAERALYYWNNEYFMNLITDNATVIVPIMFPALYRNSKTHWNKEKERMRDRDLTWINIGEKERMRDRDLTWSRVEALAMKNPHYKPSLCNsssssqeylggegeegdgsldreKIENEAYEIFKVI
******************************************************PFTLAAIKQSIIDFNLYSDI**************LMFAGMQLPSLLAYPISLLYCSLPIYSNPIQSILFADASSEHRDELFVQKIRQCCVLFDFVQDPLSELKWKEVKRTALLEMVEYLTAQDVHISEAIYPEAVNMVRLYLVAYPISILYCSIPIYSNPIHSILFADASSEHRDELFVQKIRQCCVLFDFVQDPLSELKWKEVKRTALLEMVEYLTAQDVHISEAIYPEAVNMVRLYLVFLESPDFQPNIAKKYIDQKFVLQLLDLFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKDEHKFFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDPSLTEPVVKCLLKFWPKTHSPKESVVYSQVMFLNELEEILDVIEPAEFQKVMVPLFHQIAKCVSSSHFQVAERALYYWNNEYFMNLITDNATVIVPIMFPALYRNSKTHWNK*****RDRDLTWINIGEK******DLTWSRV****************************************************
*************************************************************************************************************************LFADASSEHRDELFVQKIRQCCVLFDFVQD************TALLEMVEYLTAQDVHISEAIYPEAVNMV*****************************DASSEHRDELFVQKIRQCCVLFDFVQDPLSELKWKEVKRTALLEMVEYLTAQDVHISEAIYPEAVNMVRLYLVFLESPDFQPNIAKKYIDQKFVLQLLDLFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKDEHKFFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDPSLTEPVVKCLLKFWPKTHSPKESVVYSQVMFLNELEEILDVIEPAEFQKVMVPLFHQIAKCVSSSHFQVAERALYYWNNEYFMNLITDNATVIVPIMFPALYRNSKTHWNKEKERMRDRDLTWINIG******DRDLTWSRVEA**************************************************
MVYSEYVPGPRAMLGLPKSPSFHSGLDLLADATTATPTAPLPSSAAPPEFPATNPFTLAAIKQSIIDFNLYSDISD********DDSALMFAGMQLPSLLAYPISLLYCSLPIYSNPIQSILFADASSEHRDELFVQKIRQCCVLFDFVQDPLSELKWKEVKRTALLEMVEYLTAQDVHISEAIYPEAVNMVRLYLVAYPISILYCSIPIYSNPIHSILFADASSEHRDELFVQKIRQCCVLFDFVQDPLSELKWKEVKRTALLEMVEYLTAQDVHISEAIYPEAVNMVRLYLVFLESPDFQPNIAKKYIDQKFVLQLLDLFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKDEHKFFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDPSLTEPVVKCLLKFWPKTHSPKESVVYSQVMFLNELEEILDVIEPAEFQKVMVPLFHQIAKCVSSSHFQVAERALYYWNNEYFMNLITDNATVIVPIMFPALYRNSKTHWNKEKERMRDRDLTWINIGEKERMRDRDLTWSRVEALAMKNPHYKPSL********************SLDREKIENEAYEIFKVI
**Y****PGPRAMLG*************************************************************************L*FAGMQLPSLLAYPISLLYCSLPIYSNPIQSILFADASSEHRDELFVQKIRQCCVLFDFVQDPLSELKWKEVKRTALLEMVEYLTAQDVHISEAIYPEAVNMVRLY****************SNPIHSILFADASSEHRDELFVQKIRQCCVLFDFVQDPLSELKWKEVKRTALLEMVEYLTAQDVHISEAIYPEAVNMVRLYLVFLESPDFQPNIAKKYIDQKFVLQLLDLFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKDEHKFFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDPSLTEPVVKCLLKFWPKTHSPKESVVYSQVMFLNELEEILDVIEPAEFQKVMVPLFHQIAKCVSSSHFQVAERALYYWNNEYFMNLITDNATVIVPIMFPALYRNSKTHWNKEKERMRDRDLTWINIGEKERMRDRDLTWSRVEALAMKN*************************DGSLDREKIENEAYEI****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiii
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MVYSEYVPGPRAMLGLPKSPSFHSGLDLLADATTATPTAPLPSSAAPPEFPATNPFTLAAIKQSIIDFNLYSDISDMSSTEGESDDSALMFAGMQLPSLLAYPISLLYCSLPIYSNPIQSILFADASSEHRDELFVQKIRQCCVLFDFVQDPLSELKWKEVKRTALLEMVEYLTAQDVHISEAIYPEAVNMVRLYLVAYPISILYCSIPIYSNPIHSILFADASSEHRDELFVQKIRQCCVLFDFVQDPLSELKWKEVKRTALLEMVEYLTAQDVHISEAIYPEAVNMVRLYLVFLESPDFQPNIAKKYIDQKFVLQLLDLFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKDEHKFFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDPSLTEPVVKCLLKFWPKTHSPKESVVYSQVMFLNELEEILDVIEPAEFQKVMVPLFHQIAKCVSSSHFQVAERALYYWNNEYFMNLITDNATVIVPIMFPALYRNSKTHWNKEKERMRDRDLTWINIGEKERMRDRDLTWSRVEALAMKNPHYKPSLCNSSSSSQEYLGGEGEEGDGSLDREKIENEAYEIFKVI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query624 2.2.26 [Sep-21-2011]
Q28653586 Serine/threonine-protein yes N/A 0.690 0.735 0.564 1e-152
Q14738602 Serine/threonine-protein yes N/A 0.690 0.715 0.564 1e-152
Q28651524 Serine/threonine-protein no N/A 0.644 0.767 0.614 1e-150
Q60996524 Serine/threonine-protein no N/A 0.645 0.769 0.587 1e-149
Q13362524 Serine/threonine-protein no N/A 0.647 0.770 0.611 1e-149
Q16537467 Serine/threonine-protein no N/A 0.504 0.674 0.636 1e-125
A4FV68467 Serine/threonine-protein no N/A 0.504 0.674 0.636 1e-125
Q61151467 Serine/threonine-protein no N/A 0.504 0.674 0.634 1e-125
Q6PD03486 Serine/threonine-protein no N/A 0.501 0.644 0.623 1e-124
Q15172486 Serine/threonine-protein no N/A 0.5 0.641 0.622 1e-123
>sp|Q28653|2A5D_RABIT Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform OS=Oryctolagus cuniculus GN=PPP2R5D PE=2 SV=1 Back     alignment and function desciption
 Score =  538 bits (1385), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 296/524 (56%), Positives = 344/524 (65%), Gaps = 93/524 (17%)

Query: 125 DASSEHRDELFVQKIRQCCVLFDFVQDPLSELKWKEVKRTALLEMVEYLTAQDVHISEAI 184
           D+ ++ R+ELF+QK+RQCCVLFDFV DPLS+LK+KEVKR  L EMVEY+T     ++EAI
Sbjct: 92  DSPTQEREELFIQKLRQCCVLFDFVSDPLSDLKFKEVKRAGLNEMVEYITHSRDVVTEAI 151

Query: 185 YPEAVNMVRLYLVAYPISILYCSIPIYSNPIHSILFADASSEHRDELFVQKIRQCCVLFD 244
           YPEAV M  +         L+ ++P  SNP  +                           
Sbjct: 152 YPEAVTMFSVN--------LFRTLPPSSNPTGA--------------------------- 176

Query: 245 FVQDPLSELKWKEVKRTALLEMVEYLTAQDVHISEAIYPEAVNMVRLYLVFLESPDFQPN 304
                                  E+   +D    EA +P    +   +L FLESPDFQPN
Sbjct: 177 -----------------------EFDPEEDEPTLEAAWPHLQLVYEFFLRFLESPDFQPN 213

Query: 305 IAKKYIDQKFVLQLLDLFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIY 364
           IAKKYIDQKFVL LLDLFDSEDPRERDFLKT LHRIYGKFLGLRAYIR+QIN+IFYRFIY
Sbjct: 214 IAKKYIDQKFVLALLDLFDSEDPRERDFLKTILHRIYGKFLGLRAYIRRQINHIFYRFIY 273

Query: 365 ETEHHNGIAELLEILGSIINGFALPLKDEHKFFLLKVLLPLHKVKSLSVYHPQLAYCVVQ 424
           ETEHHNGIAELLEILGSIINGFALPLK+EHK FL++VLLPLHKVKSLSVYHPQLAYCVVQ
Sbjct: 274 ETEHHNGIAELLEILGSIINGFALPLKEEHKMFLIRVLLPLHKVKSLSVYHPQLAYCVVQ 333

Query: 425 FLEKDPSLTEPVVKCLLKFWPKTHSPKESVVYSQVMFLNELEEILDVIEPAEFQKVMVPL 484
           FLEK+ SLTEPV+  LLKFWPKTHSPKE      VMFLNELEEILDVIEP+EF KVM PL
Sbjct: 334 FLEKESSLTEPVIVGLLKFWPKTHSPKE------VMFLNELEEILDVIEPSEFSKVMEPL 387

Query: 485 FHQIAKCVSSSHFQVAERALYYWNNEYFMNLITDNATVIVPIMFPALYRNSKTHWNKE-- 542
           F Q+AKCVSS HFQVAERALYYWNNEY M+LI+DNA  ++PIMFPALYRNSK+HWNK   
Sbjct: 388 FRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAARVLPIMFPALYRNSKSHWNKTIH 447

Query: 543 -------------KERMRDRDLTWINIGEKE----RMRDRDLTWSRVEALAMKNPHY--- 582
                         +++ D D T     EK+    RM++R+  W ++E LA  NP Y   
Sbjct: 448 GLIYNALKLFMEMNQKLFD-DCTQQYKAEKQKGRFRMKEREEMWQKIEELARLNPQYPMF 506

Query: 583 --KPSLCNSSSSSQEYLGGEGEEGDGSLDREKIENEAYEIFKVI 624
              P L    S   E    E    D  L +  +E EA ++ K I
Sbjct: 507 RAPPPLPPVYSMETETPTAE----DIQLLKRTVETEAVQMLKDI 546
The B regulatory subunit might modulate substrate selectivity and catalytic activity, and also might direct the localization of the catalytic enzyme to a particular subcellular compartment.
Oryctolagus cuniculus (taxid: 9986)
>sp|Q14738|2A5D_HUMAN Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform OS=Homo sapiens GN=PPP2R5D PE=1 SV=1 Back     alignment and function description
>sp|Q28651|2A5G_RABIT Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform OS=Oryctolagus cuniculus GN=PPP2R5C PE=2 SV=1 Back     alignment and function description
>sp|Q60996|2A5G_MOUSE Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform OS=Mus musculus GN=Ppp2r5c PE=1 SV=2 Back     alignment and function description
>sp|Q13362|2A5G_HUMAN Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform OS=Homo sapiens GN=PPP2R5C PE=1 SV=3 Back     alignment and function description
>sp|Q16537|2A5E_HUMAN Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit epsilon isoform OS=Homo sapiens GN=PPP2R5E PE=1 SV=1 Back     alignment and function description
>sp|A4FV68|2A5E_BOVIN Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit epsilon isoform OS=Bos taurus GN=PPP2R5E PE=1 SV=1 Back     alignment and function description
>sp|Q61151|2A5E_MOUSE Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit epsilon isoform OS=Mus musculus GN=Ppp2r5e PE=2 SV=3 Back     alignment and function description
>sp|Q6PD03|2A5A_MOUSE Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit alpha isoform OS=Mus musculus GN=Ppp2r5a PE=1 SV=1 Back     alignment and function description
>sp|Q15172|2A5A_HUMAN Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit alpha isoform OS=Homo sapiens GN=PPP2R5A PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query624
328778947598 PREDICTED: serine/threonine-protein phos 0.687 0.717 0.561 1e-156
380030603598 PREDICTED: serine/threonine-protein phos 0.687 0.717 0.561 1e-156
350407560598 PREDICTED: serine/threonine-protein phos 0.703 0.734 0.574 1e-156
340717506598 PREDICTED: serine/threonine-protein phos 0.703 0.734 0.572 1e-156
350407557589 PREDICTED: serine/threonine-protein phos 0.703 0.745 0.574 1e-156
340717504589 PREDICTED: serine/threonine-protein phos 0.703 0.745 0.572 1e-156
307205601658 Serine/threonine-protein phosphatase 2A 0.703 0.667 0.576 1e-155
307182663563 Serine/threonine-protein phosphatase 2A 0.687 0.761 0.564 1e-155
270009544634 hypothetical protein TcasGA2_TC008818 [T 0.679 0.668 0.566 1e-155
383856207603 PREDICTED: serine/threonine-protein phos 0.639 0.661 0.580 1e-154
>gi|328778947|ref|XP_392477.4| PREDICTED: serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform-like [Apis mellifera] Back     alignment and taxonomy information
 Score =  558 bits (1439), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 304/541 (56%), Positives = 352/541 (65%), Gaps = 112/541 (20%)

Query: 121 ILFADASSEHRDELFVQKIRQCCVLFDFVQDPLSELKWKEVKRTALLEMVEYLTAQDVHI 180
           +L        R+ELF+QK+RQCCVLFDF  DPLS+LKWKEVKRTAL EMVEY+T     I
Sbjct: 87  LLSETQQGNEREELFIQKLRQCCVLFDFESDPLSDLKWKEVKRTALNEMVEYVTKNKNVI 146

Query: 181 SEAIYPEAVNMVRLYLVAYPISILYCSIPIYSNPIHSILFADASSEHRDELFVQKIRQCC 240
           +EAIYPEAVNM  +         L+ ++P  SNP                          
Sbjct: 147 TEAIYPEAVNMFAVN--------LFRTLPPSSNP-------------------------- 172

Query: 241 VLFDFVQDPLSELKWKEVKRTALLEMVEYLTAQDVHISEAIYPEAVNMVRLYLVFLESPD 300
                                      E+   +D    EA +P    +   +L  LES D
Sbjct: 173 ------------------------NGAEFDPEEDEPTLEAAWPHLQLVYEFFLRLLESQD 208

Query: 301 FQPNIAKKYIDQKFVLQLLDLFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFY 360
           FQP+IA++YIDQKFVLQLL+LFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINN+FY
Sbjct: 209 FQPSIARRYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNVFY 268

Query: 361 RFIYETEHHNGIAELLEILGSIINGFALPLKDEHKFFLLKVLLPLHKVKSLSVYHPQLAY 420
           RFIYETEHHNGIAELLEILGSIINGFALPLK+EHK FLLKVLLPLHK KSLSVYHPQLAY
Sbjct: 269 RFIYETEHHNGIAELLEILGSIINGFALPLKEEHKVFLLKVLLPLHKAKSLSVYHPQLAY 328

Query: 421 CVVQFLEKDPSLTEPVVKCLLKFWPKTHSPKESVVYSQVMFLNELEEILDVIEPAEFQKV 480
           CVVQFLEKDPSLTEPV++ LLKFWPKTHSPKE      VMFLNELEEILDVIEPAEFQKV
Sbjct: 329 CVVQFLEKDPSLTEPVIRSLLKFWPKTHSPKE------VMFLNELEEILDVIEPAEFQKV 382

Query: 481 MVPLFHQIAKCVSSSHFQVAERALYYWNNEYFMNLITDNATVIVPIMFPALYRNSKTHWN 540
           M PLF Q+AKCVSS HFQVAERALYYWNNEY M+LI+DN +VI+PIM+PA YRNS+ HWN
Sbjct: 383 MDPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNYSVILPIMYPAFYRNSRNHWN 442

Query: 541 KE----------------------------KERMRDRDLTWINIGEKERMRDRDLTWSRV 572
           K                             ++R R+R L          M+DRD  W RV
Sbjct: 443 KTIHGLIYNALKLFMEMNQKVFDECTQQYYQDRQRERKL----------MKDRDEAWMRV 492

Query: 573 EALAMKNPHYKPSLCNSSSS-----SQEYLGGEGEEGDGSLDR-----EKIENEAYEIFK 622
           EALAM++P+Y  ++   +++     SQ+ L     + DG  D+     EKIE +A E  K
Sbjct: 493 EALAMRHPNYNATIKGITNTTIGTISQQQLDSPPPDEDGDTDQTPLTLEKIEAKANEAKK 552

Query: 623 V 623
           +
Sbjct: 553 M 553

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|380030603|ref|XP_003698933.1| PREDICTED: serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform-like [Apis florea] Back     alignment and taxonomy information
>gi|350407560|ref|XP_003488125.1| PREDICTED: serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform-like isoform 2 [Bombus impatiens] Back     alignment and taxonomy information
>gi|340717506|ref|XP_003397222.1| PREDICTED: serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform-like isoform 2 [Bombus terrestris] Back     alignment and taxonomy information
>gi|350407557|ref|XP_003488124.1| PREDICTED: serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform-like isoform 1 [Bombus impatiens] Back     alignment and taxonomy information
>gi|340717504|ref|XP_003397221.1| PREDICTED: serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform-like isoform 1 [Bombus terrestris] Back     alignment and taxonomy information
>gi|307205601|gb|EFN83893.1| Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|307182663|gb|EFN69797.1| Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform [Camponotus floridanus] Back     alignment and taxonomy information
>gi|270009544|gb|EFA05992.1| hypothetical protein TcasGA2_TC008818 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|383856207|ref|XP_003703601.1| PREDICTED: serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform-like [Megachile rotundata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query624
FB|FBgn0042693984 PP2A-B' "PP2A-B'" [Drosophila 0.495 0.314 0.648 1.2e-132
UNIPROTKB|Q28651524 PPP2R5C "Serine/threonine-prot 0.5 0.595 0.658 3.3e-132
UNIPROTKB|D4A1A5514 Ppp2r5c "Protein Ppp2r5c" [Rat 0.493 0.599 0.661 8.7e-132
MGI|MGI:1349475524 Ppp2r5c "protein phosphatase 2 0.493 0.587 0.661 8.7e-132
UNIPROTKB|Q13362524 PPP2R5C "Serine/threonine-prot 0.493 0.587 0.661 2.9e-131
UNIPROTKB|Q5F3C6524 PPP2R5C "Uncharacterized prote 0.493 0.587 0.661 2.9e-131
UNIPROTKB|D4A1A4475 Ppp2r5c "Protein Ppp2r5c" [Rat 0.5 0.656 0.653 2.9e-131
UNIPROTKB|F5GWP3555 PPP2R5C "Serine/threonine-prot 0.493 0.554 0.661 3.7e-131
UNIPROTKB|H0YJ75553 PPP2R5C "Serine/threonine-prot 0.493 0.556 0.661 3.7e-131
UNIPROTKB|E2RCI9485 PPP2R5C "Uncharacterized prote 0.5 0.643 0.653 7.7e-131
FB|FBgn0042693 PP2A-B' "PP2A-B'" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 1061 (378.5 bits), Expect = 1.2e-132, Sum P(3) = 1.2e-132
 Identities = 216/333 (64%), Positives = 247/333 (74%)

Query:   268 EYLTAQDVHISEAIYPEAVNMVRLYLVFLESPDFQPNIAKKYIDQKFVLQLLDLFDSEDP 327
             E+   +D    E+ +P    +  L+L FLESPDFQP++AK++ID +FVLQLLDLFDSEDP
Sbjct:   555 EFDPEEDEPTLESSWPHLQLVYELFLRFLESPDFQPSMAKRFIDHQFVLQLLDLFDSEDP 614

Query:   328 RERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFA 387
             RERDFLKT LHRIYGKFLGLRA+IRKQINN+FYRFIYETEHHNGIAELLEILGSIINGFA
Sbjct:   615 RERDFLKTVLHRIYGKFLGLRAFIRKQINNVFYRFIYETEHHNGIAELLEILGSIINGFA 674

Query:   388 LPLKDEXXXXXXXXXXXXXXXXXXXVYHPQLAYCVVQFLEKDPSLTEPVVKCLLKFWPKT 447
             LPLK+E                   VYHPQL YCVVQFLEKDPSL+E V+K LLKFWPKT
Sbjct:   675 LPLKEEHKQFLLKVLLPLHKAKSLSVYHPQLTYCVVQFLEKDPSLSEAVIKSLLKFWPKT 734

Query:   448 HSPKESVVYSQVMFLNELEEILDVIEPAEFQKVMVPLFHQIAKCVSSSHFQVAERALYYW 507
             HSPKE      VMFLNELEE+LDVIEPAEFQKVMVPLF QIAKCVSS HFQVAERALYYW
Sbjct:   735 HSPKE------VMFLNELEELLDVIEPAEFQKVMVPLFRQIAKCVSSPHFQVAERALYYW 788

Query:   508 NNEYFMNLITDNATVIVPIMFPALYRNSKTHWNKE---------------KERMRD---R 549
             NNEY M+LITDN+ VI+PIMFPAL RNSKTHWNK                 +R+ D   +
Sbjct:   789 NNEYIMSLITDNSAVILPIMFPALNRNSKTHWNKTIHGLIYNALKLFMEIDQRLFDECSK 848

Query:   550 DLTWINIGEKERMRDRDLTWSRVEALAMKNPHY 582
             +       E+E++  R+  W +VE+LA  NP +
Sbjct:   849 NYKQEKQMEREKLSQREELWQQVESLAKTNPEW 881
GO:0008601 "protein phosphatase type 2A regulator activity" evidence=IEA;ISS;NAS
GO:0000159 "protein phosphatase type 2A complex" evidence=IEA;ISS
GO:0006470 "protein dephosphorylation" evidence=ISS
GO:0043066 "negative regulation of apoptotic process" evidence=NAS
GO:0007165 "signal transduction" evidence=IEA
GO:0007528 "neuromuscular junction development" evidence=IMP
GO:0007274 "neuromuscular synaptic transmission" evidence=IMP
GO:0045498 "sex comb development" evidence=IMP
GO:0070328 "triglyceride homeostasis" evidence=IMP
UNIPROTKB|Q28651 PPP2R5C "Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform" [Oryctolagus cuniculus (taxid:9986)] Back     alignment and assigned GO terms
UNIPROTKB|D4A1A5 Ppp2r5c "Protein Ppp2r5c" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1349475 Ppp2r5c "protein phosphatase 2, regulatory subunit B (B56), gamma isoform" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q13362 PPP2R5C "Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q5F3C6 PPP2R5C "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|D4A1A4 Ppp2r5c "Protein Ppp2r5c" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F5GWP3 PPP2R5C "Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|H0YJ75 PPP2R5C "Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2RCI9 PPP2R5C "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q147382A5D_HUMANNo assigned EC number0.56480.69070.7159yesN/A
Q286532A5D_RABITNo assigned EC number0.56480.69070.7354yesN/A
P389032A5D_YEASTNo assigned EC number0.50970.55280.4557yesN/A
Q104282AD1_SCHPONo assigned EC number0.52070.50480.5748yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query624
pfam01603405 pfam01603, B56, Protein phosphatase 2A regulatory 1e-154
PLN00122170 PLN00122, PLN00122, serine/threonine protein phosp 8e-20
pfam01603405 pfam01603, B56, Protein phosphatase 2A regulatory 1e-13
>gnl|CDD|216599 pfam01603, B56, Protein phosphatase 2A regulatory B subunit (B56 family) Back     alignment and domain information 
 Score =  449 bits (1156), Expect = e-154
 Identities = 205/360 (56%), Positives = 252/360 (70%), Gaps = 47/360 (13%)

Query: 220 FADASSEHRDELFVQKIRQCCVLFDFVQDPLSELKWKEVKRTALLEMVEYLTAQDVH--I 277
             D  S    +LF++K++QCCV+ DF  DP S+LK KE+KR  L E+V+Y++  D+   +
Sbjct: 1   LPDVPSPEFKDLFLKKLKQCCVICDF-SDPNSDLKAKEIKRQTLKEIVDYVSNSDIVGKL 59

Query: 278 SEAIYPEAVNMV------------------------------------RLYLVFLESPDF 301
           +E +Y E   M+                                     + L F+ESP F
Sbjct: 60  TEDLYDEIFKMIAVNIFRPLPPIPNPSLDPDDDEPFLEPSWPHLSLVYEILLRFIESPPF 119

Query: 302 QPNIAKKYIDQKFVLQLLDLFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYR 361
            P   KKYID  F+ +LLDLFDS DPRERD LKT LHRIYGKF GLR +IRK IN+I YR
Sbjct: 120 DPL--KKYIDHSFIKRLLDLFDSPDPRERDQLKTFLHRIYGKFPGLRPFIRKAINSILYR 177

Query: 362 FIYETEHHNGIAELLEILGSIINGFALPLKDEHKFFLLKVLLPLHKVKSLSVYHPQLAYC 421
           FIYETE  NG+AELLEILGSIINGFALPLK+EHK FLLKVLLPLHK K LS+YH QL+YC
Sbjct: 178 FIYETEKPNGVAELLEILGSIINGFALPLKEEHKDFLLKVLLPLHKSKHLSLYHQQLSYC 237

Query: 422 VVQFLEKDPSLTEPVVKCLLKFWPKTHSPKESVVYSQVMFLNELEEILDVIEPAEFQKVM 481
           VVQF+EKDPSL E V++ LLK WP T+S K      +V+FL+ELEEIL+ I P EFQK+M
Sbjct: 238 VVQFIEKDPSLAEEVIRGLLKHWPVTNSSK------EVLFLDELEEILEKIPPEEFQKIM 291

Query: 482 VPLFHQIAKCVSSSHFQVAERALYYWNNEYFMNLITDNATVIVPIMFPALYRNSKTHWNK 541
           VPLF  +A+C+SS HFQVAERAL  WNNEYF+NLI+DN+ +I+PI+FPALYRN+K HWN+
Sbjct: 292 VPLFKILARCISSPHFQVAERALKLWNNEYFVNLISDNSKLILPILFPALYRNAKNHWNQ 351

Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits (See also pfam01240), this family is called the B56 family. Length = 405
>gnl|CDD|215064 PLN00122, PLN00122, serine/threonine protein phosphatase 2A; Provisional Back     alignment and domain information
>gnl|CDD|216599 pfam01603, B56, Protein phosphatase 2A regulatory B subunit (B56 family) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 624
KOG2085|consensus457 100.0
PF01603409 B56: Protein phosphatase 2A regulatory B subunit ( 100.0
PLN00122170 serine/threonine protein phosphatase 2A; Provision 99.92
KOG2085|consensus457 99.55
PF01603409 B56: Protein phosphatase 2A regulatory B subunit ( 99.33
PF05918556 API5: Apoptosis inhibitory protein 5 (API5); Inter 88.51
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 87.68
PF14500262 MMS19_N: Dos2-interacting transcription regulator 80.49
PF12460415 MMS19_C: RNAPII transcription regulator C-terminal 80.43
>KOG2085|consensus Back     alignment and domain information 
Probab=100.00  E-value=3.4e-133  Score=1049.70  Aligned_cols=396  Identities=62%  Similarity=1.017  Sum_probs=383.5

Q ss_pred             cccccCCCCChhhhHHHHHHHHhhcccccccCCCccCCchhHHHHHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhhcc
Q psy8243         118 IQSILFADASSEHRDELFVQKIRQCCVLFDFVQDPLSELKWKEVKRTALLEMVEYLTAQDVHISEAIYPEAVNMVRLYLV  197 (624)
Q Consensus       118 ~~~~~f~d~~~~~~~~Lf~~Kl~~Ccv~fDF~sDp~~dl~~KeiKr~~L~ELvd~v~~~~~~lte~i~~e~v~Mv~~N~~  197 (624)
                      ...++|+|||+++|++||++|++|||++||| +||++|+++||+||+||+||+||++++++++||.+|+++++|+++|  
T Consensus        43 ~~LP~~~dv~~se~~~Lf~~Kl~~Cc~~FDF-~Dp~~~~~~keikR~tL~eLvd~v~~~~~kite~~~~~vv~m~s~n--  119 (457)
T KOG2085|consen   43 EPLPSLKDVPSSEQKELFIKKLEQCCVLFDF-NDPLKDLKGKEIKRQTLLELVDDVISRRGKISEEVYSEVVKMFSVN--  119 (457)
T ss_pred             eeCCccCcCChhHhHHHHHHHHHhhheeeec-cChhhhhccchhHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHH--
Confidence            4566899999999999999999999999999 5999999999999999999999999999999999999999999999  


Q ss_pred             ccccccccccCCCCCCCcccccccCCChhhhhHHHHHHHhccccccccCCCcccchhhHHHHHHHHHHHHHhhhcCCccc
Q psy8243         198 AYPISILYCSIPIYSNPIHSILFADASSEHRDELFVQKIRQCCVLFDFVQDPLSELKWKEVKRTALLEMVEYLTAQDVHI  277 (624)
Q Consensus       198 ~~~~~~lFR~lPp~~~p~~~e~fkDv~~~er~~LflqKl~qC~~vFDF~~Dp~sd~~~KeiKr~tL~ELvdyv~eeDe~~  277 (624)
                            |||+|||..||+|.                          |    |                      +||||.
T Consensus       120 ------ifR~lpp~~n~~~~--------------------------d----~----------------------eedEp~  141 (457)
T KOG2085|consen  120 ------IFRTLPPSVNPTGF--------------------------D----Y----------------------EEDEPV  141 (457)
T ss_pred             ------hhccCCcccCCCcC--------------------------C----c----------------------cccCcc
Confidence                  99999999998752                          3    4                      899999


Q ss_pred             ccchhHHHHHHHHHHHHhccCCCCChhhhhccCCHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Q psy8243         278 SEAIYPEAVNMVRLYLVFLESPDFQPNIAKKYIDQKFVLQLLDLFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINN  357 (624)
Q Consensus       278 ~E~~WpHLqlVYe~flrfv~Sp~f~p~~ak~~Id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~lR~fIRk~I~n  357 (624)
                      .|++|||||+||++|+||+.||+|+|++||+|||++||++|+++|||||||||++|||+||||||||+++|+|||++|||
T Consensus       142 le~awphLqlvye~~Lrf~~sp~~d~~vaK~yid~~FvlkLLdLFdSEDpRERe~LKT~LhrIygKfl~~r~firk~iNN  221 (457)
T KOG2085|consen  142 LEPAWPHLQLVYEFLLRFLESPDFDPSVAKKYIDQKFVLKLLDLFDSEDPREREFLKTILHRIYGKFLVHRPFIRKSINN  221 (457)
T ss_pred             cCCCchHHHHHHHHHHHHHhCcccCHHHHHHHhhHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhHHHHHHhhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhccCCcccHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhhcccccccccchhhHHHHHHHHHhhCCCChHHHH
Q psy8243         358 IFYRFIYETEHHNGIAELLEILGSIINGFALPLKDEHKFFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDPSLTEPVV  437 (624)
Q Consensus       358 if~~FIye~e~hnGIaELLeILgSIInGFa~PLKeEhk~Fl~~VLLPLHk~k~l~~Y~~qL~~cv~qFleKDpsLt~~vi  437 (624)
                      +||+||||+++||||+|||||+||||||||+||||||+.|+.|||||||++++++.||+||+|||+||++|||+|++.||
T Consensus       222 if~~FIyEte~hnGIaELLEIlgSiIngfAlPlKEEhkiFL~rvLipLhk~k~l~~yh~QLaYcivQfveKd~kl~~~VI  301 (457)
T KOG2085|consen  222 IFLRFIYETERHNGIAELLEILGSIINGFALPLKEEHKLFLVRVLIPLHKPKSLSLYHKQLAYCIVQFVEKDPKLTETVI  301 (457)
T ss_pred             hhhhhcccccccCCHHHHHHHHHHhcCcccCcchhHHHHHHHHhhhccccCCCccccccccceeeeeeeccCccccHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhccCCCCCCcccccccccchHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHhhcchhhhhhhh
Q psy8243         438 KCLLKFWPKTHSPKESVVYSQVMFLNELEEILDVIEPAEFQKVMVPLFHQIAKCVSSSHFQVAERALYYWNNEYFMNLIT  517 (624)
Q Consensus       438 ~~LLk~WP~tns~KEs~~~~~VlFLnELeeILe~~~p~~f~~v~~pLFk~La~Ci~S~hfqVAErAL~~w~Ne~~l~li~  517 (624)
                      +||+||||+|||+||      |||||||||||++++|.+|++++.|||++||+|++|+|||||||||++|||++|+++|+
T Consensus       302 rglLK~WP~tnS~KE------VmFL~ElEEILe~iep~eFqk~~~PLf~qia~c~sS~HFQVAEraL~~wnNe~i~~Li~  375 (457)
T KOG2085|consen  302 RGLLKYWPKTNSSKE------VMFLNELEEILEVIEPSEFQKIMVPLFRQIARCVSSPHFQVAERALYLWNNEYIRSLIS  375 (457)
T ss_pred             HHHHHhcCCCCCcce------eeeHhhHHHHHHhcCHHHHHHHhHHHHHHHHHHcCChhHHHHHHHHHHHhhHHHHHHHH
Confidence            999999999999999      99999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccccchHHHHHhhhccchHHHHHHHHH--------------hhH----hHhhhhhHHHHHHHHHHHHHHHHHHhC
Q psy8243         518 DNATVIVPIMFPALYRNSKTHWNKEKERMRDR--------------DLT----WINIGEKERMRDRDLTWSRVEALAMKN  579 (624)
Q Consensus       518 ~n~~~I~PiI~paL~~~sk~HWn~tVr~la~n--------------~~~----~~~~~e~~~~~~r~~~W~~Ie~~A~~~  579 (624)
                      +|+++|+|||||+||+|+++|||++|+++++|              +|+    .++.++++.+++|++.|+++|++|+.+
T Consensus       376 ~n~~~ilPiiFpaLyr~sk~hWN~~i~~l~~nvlk~f~emd~~LFeec~~~y~~~~~k~~~~~~~re~~W~~le~~~~~~  455 (457)
T KOG2085|consen  376 QNAEVILPIVFPALYRNSKSHWNQAIHNLILNVLKTFMEMDPKLFEECLALYKEDRWKEKETEEKREETWKRLEELAAEN  455 (457)
T ss_pred             hccceeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            99999999999999999999999999999999              343    245677788999999999999999987


Q ss_pred             C
Q psy8243         580 P  580 (624)
Q Consensus       580 ~  580 (624)
                      +
T Consensus       456 ~  456 (457)
T KOG2085|consen  456 P  456 (457)
T ss_pred             C
Confidence            5

>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism Back     alignment and domain information
>PLN00122 serine/threonine protein phosphatase 2A; Provisional Back     alignment and domain information
>KOG2085|consensus Back     alignment and domain information
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II Back     alignment and domain information
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query624
2npp_B449 Structure Of The Protein Phosphatase 2a Holoenzyme 1e-136
2iae_B407 Crystal Structure Of A Protein Phosphatase 2a (Pp2a 1e-136
3fga_B403 Structural Basis Of Pp2a And Sgo Interaction Length 1e-135
2jak_A392 Human Pp2a Regulatory Subunit B56g Length = 392 1e-133
2nyl_B388 Crystal Structure Of Protein Phosphatase 2a (Pp2a) 1e-131
>pdb|2NPP|B Chain B, Structure Of The Protein Phosphatase 2a Holoenzyme Length = 449 Back     alignment and structure 
Iteration: 1

 Score =  483 bits (1243), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 249/367 (67%), Positives = 271/367 (73%), Gaps = 45/367 (12%)
Query: 214 PIHSILFADASSEHRDELFVQKIRQCCVLFDFVQDPLSELKWKEVKRTALLEMVEYLTAQ 273
           P+  +   D     +++LF+QK+RQCCVLFDFV DPLS+LKWKEVKR AL EMVEY+T  
Sbjct: 24  PVVLLHIRDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHN 83
Query: 274 DVHISEAIYPE-----AVNMVR----------------------------------LYLV 294
              I+E IYPE     AVNM R                                   +L 
Sbjct: 84  RNVITEPIYPEVVHMFAVNMFRTLPPSSNPTGAEFDPEEDEPTLEAAWPHLQLVYEFFLR 143
Query: 295 FLESPDFQPNIAKKYIDQKFVLQLLDLFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQ 354
           FLESPDFQPNIAKKYIDQKFVLQLL+LFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQ
Sbjct: 144 FLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQ 203
Query: 355 INNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKDEXXXXXXXXXXXXXXXXXXXVY 414
           INNIFYRFIYETEHHNGIAELLEILGSIINGFALPLK+E                   VY
Sbjct: 204 INNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVY 263
Query: 415 HPQLAYCVVQFLEKDPSLTEPVVKCLLKFWPKTHSPKESVVYSQVMFLNELEEILDVIEP 474
           HPQLAYCVVQFLEKD +LTEPVV  LLK+WPKTHSPKE      VMFLNELEEILDVIEP
Sbjct: 264 HPQLAYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKE------VMFLNELEEILDVIEP 317
Query: 475 AEFQKVMVPLFHQIAKCVSSSHFQVAERALYYWNNEYFMNLITDNATVIVPIMFPALYRN 534
           +EF K+M PLF Q+AKCVSS HFQVAERALYYWNNEY M+LI+DNA  I+PIMFP+LYRN
Sbjct: 318 SEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRN 377
Query: 535 SKTHWNK 541
           SKTHWNK
Sbjct: 378 SKTHWNK 384
>pdb|2IAE|B Chain B, Crystal Structure Of A Protein Phosphatase 2a (Pp2a) Holoenzyme. Length = 407 Back     alignment and structure
>pdb|3FGA|B Chain B, Structural Basis Of Pp2a And Sgo Interaction Length = 403 Back     alignment and structure
>pdb|2JAK|A Chain A, Human Pp2a Regulatory Subunit B56g Length = 392 Back     alignment and structure
>pdb|2NYL|B Chain B, Crystal Structure Of Protein Phosphatase 2a (Pp2a) Holoenzyme With The Catalytic Subunit Carboxyl Terminus Truncated Length = 388 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query624
2npp_B449 PP2A, B subunit, serine/threonine-protein phosphat 1e-145
2jak_A392 Serine/threonine-protein phosphatase 2A 56 kDa RE 1e-141
3fga_B403 Serine/threonine-protein phosphatase 2A 56 kDa RE 1e-140
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-06
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20 Length = 449 Back     alignment and structure
 Score =  428 bits (1102), Expect = e-145
 Identities = 274/419 (65%), Positives = 303/419 (72%), Gaps = 63/419 (15%)

Query: 219 LFADASSEHRDELFVQKIRQCCVLFDFVQDPLSELKWKEVKRTALLEMVEYLTAQDVHIS 278
              D     +++LF+QK+RQCCVLFDFV DPLS+LKWKEVKR AL EMVEY+T     I+
Sbjct: 29  HIRDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVIT 88

Query: 279 EAIYPEAVNMV---------------------------------------RLYLVFLESP 299
           E IYPE V+M                                          +L FLESP
Sbjct: 89  EPIYPEVVHMFAVNMFRTLPPSSNPTGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESP 148

Query: 300 DFQPNIAKKYIDQKFVLQLLDLFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIF 359
           DFQPNIAKKYIDQKFVLQLL+LFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIF
Sbjct: 149 DFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIF 208

Query: 360 YRFIYETEHHNGIAELLEILGSIINGFALPLKDEHKFFLLKVLLPLHKVKSLSVYHPQLA 419
           YRFIYETEHHNGIAELLEILGSIINGFALPLK+EHK FLLKVLLPLHKVKSLSVYHPQLA
Sbjct: 209 YRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLA 268

Query: 420 YCVVQFLEKDPSLTEPVVKCLLKFWPKTHSPKESVVYSQVMFLNELEEILDVIEPAEFQK 479
           YCVVQFLEKD +LTEPVV  LLK+WPKTHSPKE      VMFLNELEEILDVIEP+EF K
Sbjct: 269 YCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKE------VMFLNELEEILDVIEPSEFVK 322

Query: 480 VMVPLFHQIAKCVSSSHFQVAERALYYWNNEYFMNLITDNATVIVPIMFPALYRNSKTHW 539
           +M PLF Q+AKCVSS HFQVAERALYYWNNEY M+LI+DNA  I+PIMFP+LYRNSKTHW
Sbjct: 323 IMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKTHW 382

Query: 540 NKEKERMRDRDLTWIN------------------IGEKERMRDRDLTWSRVEALAMKNP 580
           NK    +    L                      + EK +M++R+  W ++E LA  NP
Sbjct: 383 NKTIHGLIYNALKLFMEMNQKLFDDCTQQFKAEKLKEKLKMKEREEAWVKIENLAKANP 441
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20 Length = 392 Back     alignment and structure
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B* Length = 403 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query624
3fga_B403 Serine/threonine-protein phosphatase 2A 56 kDa RE 100.0
2npp_B449 PP2A, B subunit, serine/threonine-protein phosphat 100.0
2jak_A392 Serine/threonine-protein phosphatase 2A 56 kDa RE 100.0
2jak_A392 Serine/threonine-protein phosphatase 2A 56 kDa RE 99.54
3fga_B403 Serine/threonine-protein phosphatase 2A 56 kDa RE 99.48
2npp_B449 PP2A, B subunit, serine/threonine-protein phosphat 99.46
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 93.92
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 93.34
1ibr_B 462 P95, importin beta-1 subunit, nuclear factor; smal 89.77
2bpt_A 861 Importin beta-1 subunit; nuclear transport, nucleo 88.35
1qgr_A 876 Protein (importin beta subunit); transport recepto 87.82
4fdd_A 852 Transportin-1; heat repeats, karyopherin, nuclear 85.21
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 84.97
2bpt_A 861 Importin beta-1 subunit; nuclear transport, nucleo 82.73
3u0r_A507 Apoptosis inhibitor 5; heat repeat, armadillo repe 82.56
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 80.38
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B* Back     alignment and structure
Probab=100.00  E-value=3.7e-121  Score=977.14  Aligned_cols=384  Identities=73%  Similarity=1.181  Sum_probs=370.9

Q ss_pred             ChhhhHHHHHHHHhhcccccccCCCccCCchhHHHHHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhhccccccccccc
Q psy8243         127 SSEHRDELFVQKIRQCCVLFDFVQDPLSELKWKEVKRTALLEMVEYLTAQDVHISEAIYPEAVNMVRLYLVAYPISILYC  206 (624)
Q Consensus       127 ~~~~~~~Lf~~Kl~~Ccv~fDF~sDp~~dl~~KeiKr~~L~ELvd~v~~~~~~lte~i~~e~v~Mv~~N~~~~~~~~lFR  206 (624)
                      |++||++||++||++||++|||++||++|+++||+||+||+||+||++++++++||++|+++++||++|        |||
T Consensus         1 ~~~e~~~lf~~Kl~~C~~ifDF~~d~~~d~~~Ke~Kr~~L~el~~~~~~~~~~lte~~~~~~~~Mi~~N--------iFR   72 (403)
T 3fga_B            1 PPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEPIYPEVVHMFAVN--------MFR   72 (403)
T ss_dssp             CCSHHHHHHHHHHHHTTCCCCSSSSTTTTHHHHHHHHHHHHHHHHHHHHSCSCCCTTHHHHHHHHHHHH--------HCC
T ss_pred             ChhHHHHHHHHHHHHhCCccCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHh--------hCC
Confidence            688999999999999999999977999999999999999999999999999999999999999999999        999


Q ss_pred             cCCCCCCCcccccccCCChhhhhHHHHHHHhccccccccCCCcccchhhHHHHHHHHHHHHHhhhcCCcccccchhHHHH
Q psy8243         207 SIPIYSNPIHSILFADASSEHRDELFVQKIRQCCVLFDFVQDPLSELKWKEVKRTALLEMVEYLTAQDVHISEAIYPEAV  286 (624)
Q Consensus       207 ~lPp~~~p~~~e~fkDv~~~er~~LflqKl~qC~~vFDF~~Dp~sd~~~KeiKr~tL~ELvdyv~eeDe~~~E~~WpHLq  286 (624)
                      ++||.++|.|.+                        ||    |                      +||+|+.|++|||||
T Consensus        73 ~lPp~~~~~~~~------------------------~d----~----------------------eedep~~e~sWpHLq  102 (403)
T 3fga_B           73 TLPPSSNPTGAE------------------------FD----P----------------------EEDEPTLEAAWPHLQ  102 (403)
T ss_dssp             CCCCCSSCCSTT------------------------CC----G----------------------GGCCCCCCTTHHHHH
T ss_pred             CCCCCCCCcccc------------------------CC----c----------------------cccccccccCcHHHH
Confidence            999999987665                        55    4                      899999999999999


Q ss_pred             HHHHHHHHhccCCCCChhhhhccCCHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhhcc
Q psy8243         287 NMVRLYLVFLESPDFQPNIAKKYIDQKFVLQLLDLFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYET  366 (624)
Q Consensus       287 lVYe~flrfv~Sp~f~p~~ak~~Id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~lR~fIRk~I~nif~~FIye~  366 (624)
                      +||++|+||++||+|+|+++|+|||++||.+|+++|+|+|||||++||++||||||||+++|++||++|+|+|++||||+
T Consensus       103 lVYe~llrfi~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk~innif~~fiye~  182 (403)
T 3fga_B          103 LVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYET  182 (403)
T ss_dssp             HHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhccccChhhHHhhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcccHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhhcccccccccchhhHHHHHHHHHhhCCCChHHHHHHHhccCCC
Q psy8243         367 EHHNGIAELLEILGSIINGFALPLKDEHKFFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDPSLTEPVVKCLLKFWPK  446 (624)
Q Consensus       367 e~hnGIaELLeILgSIInGFa~PLKeEhk~Fl~~VLLPLHk~k~l~~Y~~qL~~cv~qFleKDpsLt~~vi~~LLk~WP~  446 (624)
                      ++||||+|||||+||||||||+|||+||+.||.||||||||+++++.||+||+||++||++|||+|+..+++||+||||+
T Consensus       183 e~~~GIaeLLeilgsIinGfa~PLkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L~~~vi~~LLk~WP~  262 (403)
T 3fga_B          183 EHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVVMALLKYWPK  262 (403)
T ss_dssp             CCCTTHHHHHHHHHHHHHHCCSSCCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGGHHHHHHHHHHTCCS
T ss_pred             ccCCCHHHHHHHHHHHHcccCCCchHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhCchhHHHHHHHHHHhCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcccccccccchHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHhhcchhhhhhhhccccccccc
Q psy8243         447 THSPKESVVYSQVMFLNELEEILDVIEPAEFQKVMVPLFHQIAKCVSSSHFQVAERALYYWNNEYFMNLITDNATVIVPI  526 (624)
Q Consensus       447 tns~KEs~~~~~VlFLnELeeILe~~~p~~f~~v~~pLFk~La~Ci~S~hfqVAErAL~~w~Ne~~l~li~~n~~~I~Pi  526 (624)
                      |||+||      |+||+||++||+.++|++|++++.++|++||+|++|+|||||||||++|+|++++++|++|++.|+|+
T Consensus       263 tns~Ke------vlFL~Ele~iLe~~~~~~f~~i~~~lf~~la~ci~S~hfqVAErAL~~wnNe~i~~li~~n~~~IlPi  336 (403)
T 3fga_B          263 THSPKE------VMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPI  336 (403)
T ss_dssp             SCHHHH------HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHTTHHHHHHH
T ss_pred             CCcHHH------HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHhccHHHHHHHHHhHHHHHHH
Confidence            999999      99999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHhhhccchHHHHHHHHHh--------------hH----hHhhhhhHHHHHHHHHHHHHHH
Q psy8243         527 MFPALYRNSKTHWNKEKERMRDRD--------------LT----WINIGEKERMRDRDLTWSRVEA  574 (624)
Q Consensus       527 I~paL~~~sk~HWn~tVr~la~n~--------------~~----~~~~~e~~~~~~r~~~W~~Ie~  574 (624)
                      |+|+|++++++|||++|+++++|.              |+    .++.++++++++|++.|++|++
T Consensus       337 i~p~L~~~~~~HWn~~v~~l~~~vlk~l~e~d~~lF~~~~~~~~~~~~~~~~~~~~r~~~W~~~~~  402 (403)
T 3fga_B          337 MFPSLYRNSKTHWNKTIHGLIYNALKLFMEMNQKLFDDCTQQFKAEKLKEKLKMKEREEAWVKIEN  402 (403)
T ss_dssp             HHHHHHHTTSCCSCHHHHHHHHHHHHHHHTTSCCCCCTTHHHHHHHHHHHHHHHHHHHHHHTTCSC
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999993              33    2345667788999999999874
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20 Back     alignment and structure
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20 Back     alignment and structure
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20 Back     alignment and structure
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B* Back     alignment and structure
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20 Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 624
d2jaka1343 a.118.1.20 (A:30-372) Serine/threonine-protein pho 1e-145
>d2jaka1 a.118.1.20 (A:30-372) Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 343 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: B56-like
domain: Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  423 bits (1088), Expect = e-145
 Identities = 252/347 (72%), Positives = 272/347 (78%), Gaps = 45/347 (12%)

Query: 222 DASSEHRDELFVQKIRQCCVLFDFVQDPLSELKWKEVKRTALLEMVEYLTAQDVHISEAI 281
           D     +++LF+QK+RQCCVLFDFV DPLS+LKWKEVKR AL EMVEY+T     I+E I
Sbjct: 3   DVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEPI 62

Query: 282 YPEAVNMV---------------------------------------RLYLVFLESPDFQ 302
           YPE V+M                                          +L FLESPDFQ
Sbjct: 63  YPEVVHMFAVNMFRTLPPSSNPTGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESPDFQ 122

Query: 303 PNIAKKYIDQKFVLQLLDLFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRF 362
           PNIAKKYIDQKFVLQLL+LFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRF
Sbjct: 123 PNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRF 182

Query: 363 IYETEHHNGIAELLEILGSIINGFALPLKDEHKFFLLKVLLPLHKVKSLSVYHPQLAYCV 422
           IYETEHHNGIAELLEILGSIINGFALPLK+EHK FLLKVLLPLHKVKSLSVYHPQLAYCV
Sbjct: 183 IYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCV 242

Query: 423 VQFLEKDPSLTEPVVKCLLKFWPKTHSPKESVVYSQVMFLNELEEILDVIEPAEFQKVMV 482
           VQFLEKD +LTEPVV  LLK+WPKTHSPKE      VMFLNELEEILDVIEP+EF K+M 
Sbjct: 243 VQFLEKDSTLTEPVVMALLKYWPKTHSPKE------VMFLNELEEILDVIEPSEFVKIME 296

Query: 483 PLFHQIAKCVSSSHFQVAERALYYWNNEYFMNLITDNATVIVPIMFP 529
           PLF Q+AKCVSS HFQVAERALYYWNNEY M+LI+DNA  I+PIMFP
Sbjct: 297 PLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFP 343

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query624
d2jaka1343 Serine/threonine-protein phosphatase 2A regulatory 100.0
d2jaka1343 Serine/threonine-protein phosphatase 2A regulatory 99.5
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 89.82
d1qgra_ 876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 82.13
>d2jaka1 a.118.1.20 (A:30-372) Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: B56-like
domain: Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-107  Score=855.24  Aligned_cols=343  Identities=76%  Similarity=1.227  Sum_probs=324.6

Q ss_pred             CCCCChhhhHHHHHHHHhhcccccccCCCccCCchhHHHHHHHHHHHHHHhhhCCCCCChhhHHHHHHHHHhhccccccc
Q psy8243         123 FADASSEHRDELFVQKIRQCCVLFDFVQDPLSELKWKEVKRTALLEMVEYLTAQDVHISEAIYPEAVNMVRLYLVAYPIS  202 (624)
Q Consensus       123 f~d~~~~~~~~Lf~~Kl~~Ccv~fDF~sDp~~dl~~KeiKr~~L~ELvd~v~~~~~~lte~i~~e~v~Mv~~N~~~~~~~  202 (624)
                      ++|||++||++||++||++||++|||++||++|+++||+||++|+||+||++++++.+||++|+++++||++|       
T Consensus         1 l~d~~~~e~~~lf~~Kl~~C~~i~DF~~d~~~d~~~K~~K~~~L~el~~~~~~~~~~l~e~~~~~i~~Mi~~N-------   73 (343)
T d2jaka1           1 IRDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEPIYPEVVHMFAVN-------   73 (343)
T ss_dssp             CCCCC-CSCSHHHHHHHHHTTCCCCCSSCSSSSHHHHHHHHHHHHHHHHHHTTCCSCCCTTHHHHHHHHHHHH-------
T ss_pred             CCCCChHHHHHHHHHHHHHhCcccCCCCCccccHHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHH-------
Confidence            5899999999999999999999999977999999999999999999999999999999999999999999999       


Q ss_pred             cccccCCCCCCCcccccccCCChhhhhHHHHHHHhccccccccCCCcccchhhHHHHHHHHHHHHHhhhcCCcccccchh
Q psy8243         203 ILYCSIPIYSNPIHSILFADASSEHRDELFVQKIRQCCVLFDFVQDPLSELKWKEVKRTALLEMVEYLTAQDVHISEAIY  282 (624)
Q Consensus       203 ~lFR~lPp~~~p~~~e~fkDv~~~er~~LflqKl~qC~~vFDF~~Dp~sd~~~KeiKr~tL~ELvdyv~eeDe~~~E~~W  282 (624)
                       |||++||..++.+.+                        ||.                          ++|+++.|++|
T Consensus        74 -ifR~lPp~~~~~~~~------------------------~~~--------------------------e~d~~~~e~sW  102 (343)
T d2jaka1          74 -MFRTLPPSSNPTGAE------------------------FDP--------------------------EEDEPTLEAAW  102 (343)
T ss_dssp             -HCSCCCC-----------------------------------------------------------------CCCCTTH
T ss_pred             -hCCCCCCCCCccccc------------------------cCc--------------------------cccccccCCCC
Confidence             999999998876554                        453                          78999999999


Q ss_pred             HHHHHHHHHHHHhccCCCCChhhhhccCCHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHh
Q psy8243         283 PEAVNMVRLYLVFLESPDFQPNIAKKYIDQKFVLQLLDLFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRF  362 (624)
Q Consensus       283 pHLqlVYe~flrfv~Sp~f~p~~ak~~Id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~lR~fIRk~I~nif~~F  362 (624)
                      ||||+||++|+||+.+|+|+|+.+++|||++|+.+|+++|+|+|+|||++|+++||||||||+++|++||++|+|+|++|
T Consensus       103 pHL~lVY~ill~f~~s~~~~~~~~~~~id~~Fi~~Ll~lf~S~D~rER~~lk~~l~~iy~kf~~~R~~Ir~~i~~if~~f  182 (343)
T d2jaka1         103 PHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRF  182 (343)
T ss_dssp             HHHHHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHhccccCchhHHhhCCHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccCCcccHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhhcccccccccchhhHHHHHHHHHhhCCCChHHHHHHHhc
Q psy8243         363 IYETEHHNGIAELLEILGSIINGFALPLKDEHKFFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDPSLTEPVVKCLLK  442 (624)
Q Consensus       363 Iye~e~hnGIaELLeILgSIInGFa~PLKeEhk~Fl~~VLLPLHk~k~l~~Y~~qL~~cv~qFleKDpsLt~~vi~~LLk  442 (624)
                      |||+++|+||+|||||+|||||||+.|||+||+.|+.++|+|||++++++.||+||+||+++|++|||+|+..+++||+|
T Consensus       183 i~e~~~~~gI~elLeil~sii~gf~~plkeeh~~f~~~vllPLhk~~~~~~y~~qL~~~v~~f~~kDp~l~~~~i~~llk  262 (343)
T d2jaka1         183 IYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVVMALLK  262 (343)
T ss_dssp             HTSSCCCSCHHHHHHHHHHHHHTCCSSCCHHHHHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred             hhcCCCCccHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCcccccccccchHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHhhcchhhhhhhhccccc
Q psy8243         443 FWPKTHSPKESVVYSQVMFLNELEEILDVIEPAEFQKVMVPLFHQIAKCVSSSHFQVAERALYYWNNEYFMNLITDNATV  522 (624)
Q Consensus       443 ~WP~tns~KEs~~~~~VlFLnELeeILe~~~p~~f~~v~~pLFk~La~Ci~S~hfqVAErAL~~w~Ne~~l~li~~n~~~  522 (624)
                      |||+||++||      |+||+||++|++.+++++|++++.++|++||+|++|+|||||||||++|+|++++++|++|++.
T Consensus       263 ~WP~t~~~Ke------v~FL~el~~il~~~~~~~f~~~~~~lf~~la~ci~S~h~qVAErAl~~w~N~~~~~li~~n~~~  336 (343)
T d2jaka1         263 YWPKTHSPKE------VMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAK  336 (343)
T ss_dssp             SSCSSCCTTH------HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHGGGGCHHHHHHHHHTHHH
T ss_pred             hCCCCCchHH------HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHCCHHHHHHHHhCccc
Confidence            9999999999      9999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccchH
Q psy8243         523 IVPIMFP  529 (624)
Q Consensus       523 I~PiI~p  529 (624)
                      |+|+|+|
T Consensus       337 i~Pii~P  343 (343)
T d2jaka1         337 ILPIMFP  343 (343)
T ss_dssp             HTTTSCC
T ss_pred             eEeeeCC
Confidence            9999987
>d2jaka1 a.118.1.20 (A:30-372) Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure