Psyllid ID: psy825

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-----
MTKKYLKKREKILKNKLDVKAVSNEKASCSESNEKDKKTPETTTSESSVTNAPEKKELANVANSPKSENEVTNVKVESENKTNENSKEDTVKIDTEVKKKEVDETVKKNEVELKSKEEVKSEVLKEVEKESKKEEKTVDKKEQEQKNDDKNMKNENKDAIKVEEKKNNEGDKSVAKIEVDQKSKESDKAKTDTEQKNKELKNVKKTEPDQKNKEGLKNNDKKQQQDKNKKQGKTSPPDTGASVNAVKTPAVSIKEHPKTDVMLQMFNDSQTPDEKFKIISQKYSELYHDFNILSLLSKQNEKQIALLQNEKEILTLENSKQELTREKLENLCRELQKQNKAIREENLQKFREEEEKRKNVSVKLENTLSEISNQVQESNNKTMKLRGDNLDMAKKFRELLIQYDEKEQELLDYKAKYLEMQKTENGLRKQISMYGEKYDEFQQTLSRSNEIFAGFKSEMESMSSKINKLEKETATWKQRWEKSHEAYLEMSNEKTKAESELITTCRQLAALLKLCRTLQTERAEMLAKLNGAGGYSYLILSYMKKFDRRNCNNGGLMEPKSKREG
ccHHHHHHHHHHHHcHHHHHHHHHHHHHcHHHcHHHccccccccccccccccHHHHHHHHHHcccccHHHHHHHHHHHHcHHcHHcHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcccccHHHHHHHHHcHHHHHHHHHHHHcccccccccccHHHHccccHHHHccccHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHccccccccccccccccccccc
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHccccccHHHcHHHHccHHHHHccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHccccccccccccccccccccc
MTKKYLKKREKILKNKLDVKAvsnekascsesnekdkktpetttsessvtnapekkelanvanspksenevtNVKVEsenktnenskedTVKIDTEVKKKEVDETVKKNEVELKSKEEVKSEVLKEVEKESKKEEKTVDKKEQEQKNDDKNMKNENKDAIKVEEkknnegdksvAKIEVDqkskesdkaKTDTEQKNKELknvkktepdqknkeglknndkkqqqdknkkqgktsppdtgasvnavktpavsikehpktdVMLQmfndsqtpdeKFKIISQKYSELYHDFNILSLLSKQNEKQIALLQNEKEILTLENSKQELTREKLENLCRELQKQNKAIREENLQKFREEEEKRKNVSVKLENTLSEISNQVQESNNktmklrgdNLDMAKKFRELLIQYDEKEQELLDYKAKYLEMQKTENGLRKQISMYGEKYDEFQQTLSRSNEIFAGFKSEMESMSSKINKLEKETATWKQRWEKSHEAYLEMSNEKTKAESELITTCRQLAALLKLCRTLQTERAEMLAKLNGAGGYSYLILSYMKKfdrrncnngglmepkskreg
mtkkylkkrekilknkldvkavsnekascsesnekdkktpetttsessvtnapekkelanvanspksenevtnvkvesenktnenskedtvkidtevkkkevdetvkknevelkskeevksevlkevekeskkeektvdkkeqeqknddknmknenkdaikveekknnegdksvakievdqkskesdkaktdteqknkelknvkktepdqknkeglknndkkqqqdknkkqgktsppdtgasvnavktpavsikehpktDVMLQMFNDSQTPDEKFKIISQKYSELYHDFNILSLLSKQNEKQIALLQNEKEILTLENSKQELTREKLENLCRELQKqnkaireenlqkfreeeekrknvsvklentlseisnqvqesnnktmklrgdnLDMAKKFRELLIQYDEKEQELLDYKAKYLEMQKTENGLRKQISMYGEKYDEFQQTLSRSNEIFAGFKSEMESMSSKINKLEKETATWKQRWEKSHEAYLEMSNEKTKAESELITTCRQLAALLKLCRTLQTERAEMLAklngaggySYLILSYMKKFDRRNCnngglmepkskreg
MTkkylkkrekilknklDVKAVSNEKASCSESNekdkktpetttsessvtNAPEKKELANVANSPKSENEVTnvkvesenktnenskedtvkidtevkkkevdetvkknevelkskeevksevlkevekeskkeektvdkkeqeqknddknmknenkdAIKVEEKKNNEGDKSVAKIEVDQKSKESDKAKTDTEQKNKELKNVKKTEPDQKNKEGLknndkkqqqdknkkqGKTSPPDTGASVNAVKTPAVSIKEHPKTDVMLQMFNDSQTPDEKFKIISQKYSELYHDFNILSLLSKQNEKQIALLQNEKEILTLENSKQELTREKLENLCRELQKQNKAIREENLQKFREEEEKRKNVSVKLENTLSEISNQVQESNNKTMKLRGDNLDMAKKFRELLIQYDEKEQELLDYKAKYLEMQKTENGLRKQISMYGEKYDEFQQTLSRSNEIFAGFKSEMESMSSKINKLEKETATWKQRWEKSHEAYLEMSNEKTKAESELITTCRQLAALLKLCRTLQTERAEMLAKLNGAGGYSYLILSYMKKFDRRNCNNGGLMEPKSKREG
***********************************************************************************************************************************************************************************************************************************************************************************FKIISQKYSELYHDFNILSLLSKQNEKQIALLQ*************************************************************************************KKFRELLIQYDEKEQELLDYKAKYLEM**********ISMYG****************************************************************ELITTCRQLAALLKLCRTLQTERAEMLAKLNGAGGYSYLILSYMKKFDRRNC**************
*************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************
MTKKYLKKREKILKNKLDVKAV******************************PEKKE*******************************DTVKIDTEVKKKEVDETVKKNEVELKSKEEVKSEV****************************MKNENKDAIKVEEKKNNEGDKSVAK*********************KELKN****************************************VNAVKTPAVSIKEHPKTDVMLQMFNDSQTPDEKFKIISQKYSELYHDFNILSLLSKQNEKQIALLQNEKEILTLENSKQELTREKLENLCRELQKQNKAIREENLQKFRE**********KLENTLSEISNQVQESNNKTMKLRGDNLDMAKKFRELLIQYDEKEQELLDYKAKYLEMQKTENGLRKQISMYGEKYDEFQQTLSRSNEIFAGFKSEMESMSSKINKLEKETATWKQRWEKSHEAYLEMSNEKTKAESELITTCRQLAALLKLCRTLQTERAEMLAKLNGAGGYSYLILSYMKKFDRRNCNNGGL*********
*TKKYLKKREKILKNKLDVKAVSNE*ASCSESNEKDKKTPETTTSESSVTNAPEKKELANVANSPKSENEVTNVKVESENKTNENSKEDTVKIDTEVKKKEVDETVKKNEVELKSKEEVKSEVLKEVEKESKKEEKTVDKKEQEQKNDDKNMKNENKDAIKVEEKKNN***KSVAKIEVDQKSKESDKAKTDTEQKNKELKNVKKTEPDQKNKEGLKNND*K******************AS*NAVKTPAVSIKEHPKTDVMLQMFNDSQTPDEKFKIISQKYSELYHDFNILSLLSKQNEKQIALLQNEKEILTLENSKQELTREKLENLCRELQKQNKAIREENLQKFREEEEKRKNVSVKLENTLSEISNQVQESNNKTMKLRGDNLDMAKKFRELLIQYDEKEQELLDYKAKYLEMQKTENGLRKQISMYGEKYDEFQQTLSRSNEIFAGFKSEMESMSSKINKLEKETATWKQRWEKSHEAYLEMSNEKTKAESELITTCRQLAALLKLCRTLQTERAEMLAKLNGAGGYSYLILSYMKKFD***C*N************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MTKKYLKKREKILKNKLDVKAVSNEKASCSESNEKDKKTPETTTSESSVTNAPEKKELANVANSPKSENEVTNVKVESENKTNENSKEDTVKIDTEVKKKEVDETVKKNEVELKSKEEVKSEVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAIKVEEKKNNEGDKSVAKIEVDQKSKESDKAKTDTEQKNKELKNVKKTEPDQKNKEGLKNNDKKQQQDKNKKQGKTSPPDTGASVNAVKTPAVSIKEHPKTDVMLQMFNDSQTPDEKFKIISQKYSELYHDFNILSLLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKRKNVxxxxxxxxxxxxxxxxxxxxxTMKLRGDNLDMAKKxxxxxxxxxxxxxxxxxxxxxxxxxxxxENGLRKQISMYGEKYDEFQQTLSRSNEIxxxxxxxxxxxxxxxxxxxxxxxxxxxxWEKSHEAYLEMSNEKTKAESELITTCRQLAALLKLCRTLQTERAEMLAKLNGAGGYSYLILSYMKKFDRRNCNNGGLMEPKSKREG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query565 2.2.26 [Sep-21-2011]
P40222546 Alpha-taxilin OS=Homo sap yes N/A 0.516 0.534 0.354 8e-43
Q6PAM1554 Alpha-taxilin OS=Mus musc yes N/A 0.451 0.460 0.371 4e-42
Q8BHN1524 Gamma-taxilin OS=Mus musc no N/A 0.500 0.540 0.348 5e-40
Q9NUQ3528 Gamma-taxilin OS=Homo sap no N/A 0.456 0.488 0.361 2e-39
Q9I969 676 Beta-taxilin OS=Gallus ga no N/A 0.477 0.399 0.362 3e-37
Q8N3L3 684 Beta-taxilin OS=Homo sapi no N/A 0.481 0.397 0.354 4e-35
Q8VBT1 685 Beta-taxilin OS=Mus muscu no N/A 0.481 0.397 0.351 1e-32
Q9BZA4181 Putative gamma-taxilin-li no N/A 0.203 0.635 0.382 2e-13
>sp|P40222|TXLNA_HUMAN Alpha-taxilin OS=Homo sapiens GN=TXLNA PE=1 SV=3 Back     alignment and function desciption
 Score =  175 bits (444), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 126/355 (35%), Positives = 196/355 (55%), Gaps = 63/355 (17%)

Query: 261 VMLQMFNDSQTPDEKFKIISQKYSELYHDFNILSLLSKQNEKQIALLQ-------NEKEI 313
           +++Q  N   TP+EK   + +KY+EL  +        + ++KQ+ LLQ        EK+ 
Sbjct: 174 LLMQTLNTLSTPEEKLAALCKKYAELLEEH-------RNSQKQMKLLQKKQSQLVQEKDH 226

Query: 314 LTLENSKQELTREKLENLCRELQKQNKAIREENLQKFREEEEKRKNVSVKLENTLSEISN 373
           L  E+SK  L R KLE+LCRELQ+ N++++EE +Q+ REEEEKRK V+   + TL++I  
Sbjct: 227 LRGEHSKAVLARSKLESLCRELQRHNRSLKEEGVQRAREEEEKRKEVTSHFQVTLNDIQL 286

Query: 374 QVQESNNKTMKLRGDNLDMAKKFRELLIQYDEKE-------------QELLDYKAKYLE- 419
           Q+++ N +  KLR +N+++A++ ++L+ QY+ +E             Q+L+D K +  + 
Sbjct: 287 QMEQHNERNSKLRQENMELAERLKKLIEQYELREEHIDKVFKHKDLQQQLVDAKLQQAQE 346

Query: 420 -----------------------------MQKTENGLRKQISMYGEKYDEFQQTLSRSNE 450
                                        M++ E  L++Q+++Y EK++EFQ TLS+S+E
Sbjct: 347 MLKEAEERHQREKDFLLKEAVESQRMCELMKQQETHLKQQLALYTEKFEEFQNTLSKSSE 406

Query: 451 IFAGFKSEMESMSSKINKLEKETATWKQRWEKSHEAYLEMSNEKTKAESELITTCRQLAA 510
           +F  FK EME M+ KI KLEKET  ++ RWE S++A LEM+ EKT  + EL     ++  
Sbjct: 407 VFTTFKQEMEKMTKKIKKLEKETTMYRSRWESSNKALLEMAEEKTVRDKELEGLQVKIQR 466

Query: 511 LLKLCRTLQTERAEMLAKLN--GAGGYSYLILSYMKKFDRRNCNNGGLMEPKSKR 563
           L KLCR LQTER ++  ++    AGG   L  S       R     G   P S R
Sbjct: 467 LEKLCRALQTERNDLNKRVQDLSAGGQGSLTDS----GPERRPEGPGAQAPSSPR 517
May be involved in intracellular vesicle traffic and potentially in calcium-dependent exocytosis in neuroendocrine cells.
Homo sapiens (taxid: 9606)
>sp|Q6PAM1|TXLNA_MOUSE Alpha-taxilin OS=Mus musculus GN=Txlna PE=2 SV=1 Back     alignment and function description
>sp|Q8BHN1|TXLNG_MOUSE Gamma-taxilin OS=Mus musculus GN=Txlng PE=1 SV=1 Back     alignment and function description
>sp|Q9NUQ3|TXLNG_HUMAN Gamma-taxilin OS=Homo sapiens GN=TXLNG PE=1 SV=2 Back     alignment and function description
>sp|Q9I969|TXLNB_CHICK Beta-taxilin OS=Gallus gallus GN=TXLNB PE=2 SV=1 Back     alignment and function description
>sp|Q8N3L3|TXLNB_HUMAN Beta-taxilin OS=Homo sapiens GN=TXLNB PE=1 SV=3 Back     alignment and function description
>sp|Q8VBT1|TXLNB_MOUSE Beta-taxilin OS=Mus musculus GN=Txlnb PE=2 SV=2 Back     alignment and function description
>sp|Q9BZA4|CY15B_HUMAN Putative gamma-taxilin-like protein CYorf15B OS=Homo sapiens GN=CYorf15B PE=5 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query565
193587257542 PREDICTED: alpha-taxilin-like [Acyrthosi 0.474 0.494 0.401 2e-54
156549776611 PREDICTED: alpha-taxilin-like [Nasonia v 0.474 0.438 0.418 2e-53
307199540 841 Alpha-taxilin [Harpegnathos saltator] 0.469 0.315 0.383 5e-51
242005170510 alpha-taxilin, putative [Pediculus human 0.469 0.519 0.406 2e-50
291227350578 PREDICTED: taxilin alpha-like [Saccoglos 0.483 0.472 0.386 3e-49
390363323626 PREDICTED: alpha-taxilin-like [Strongylo 0.483 0.436 0.369 4e-45
443722688305 hypothetical protein CAPTEDRAFT_104506, 0.461 0.855 0.404 5e-45
113195552468 gamma-taxilin [Danio rerio] gi|108742015 0.550 0.664 0.339 1e-41
149773476514 alpha-taxilin [Danio rerio] gi|146218437 0.467 0.513 0.372 1e-41
194207761550 PREDICTED: alpha-taxilin [Equus caballus 0.479 0.492 0.366 2e-41
>gi|193587257|ref|XP_001944177.1| PREDICTED: alpha-taxilin-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
 Score =  219 bits (559), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 125/311 (40%), Positives = 187/311 (60%), Gaps = 43/311 (13%)

Query: 262 MLQMFNDSQTPDEKFKIISQKYSELYHDFNILSLLSKQNEKQIALLQNEKEILTLENSKQ 321
           +L   N   TP+EK   +  KY++L  +   L    KQ EK+++    E++I+  E +K 
Sbjct: 84  VLNSMNSLNTPEEKLAALCIKYADLMEENTKLKTAYKQTEKRVSQALTERDIVRGEMNKA 143

Query: 322 ELTREKLENLCRELQKQNKAIREENLQKFREEEEKRKNVSVKLENTLSEISNQVQESNNK 381
            +TR +LE+LCRELQKQNKAIREE+L++ +E E+KR  ++ K +NTLSEI++ +Q+++ K
Sbjct: 144 VMTRSRLESLCRELQKQNKAIREESLKRVKEAEDKRMEMTNKFQNTLSEIASVMQQNSEK 203

Query: 382 TMKLRGDNLDMAKKFRELLIQYDEKEQELLD----------------------------- 412
             KLR DN+DM+ + + +  QY+ +EQ+++                              
Sbjct: 204 NNKLRDDNMDMSSRLKNVCEQYELREQQVVKLAKQIELETQLCDAKLAKANMEISVERET 263

Query: 413 --------------YKAKYLEMQKTENGLRKQISMYGEKYDEFQQTLSRSNEIFAGFKSE 458
                         Y+ +  EMQ TE  LR QIS+Y EKY+EFQ  L+RSN++FAGFK +
Sbjct: 264 ILNEKTHLLKEIRLYQTRIEEMQNTEIDLRNQISLYNEKYEEFQNALARSNKVFAGFKGD 323

Query: 459 MESMSSKINKLEKETATWKQRWEKSHEAYLEMSNEKTKAESELITTCRQLAALLKLCRTL 518
           ME MS KI K EKE+A+WK R+E+  +   EM++E+T+  S+L    RQL+ L KLCRTL
Sbjct: 324 MELMSKKIVKQEKESASWKMRYERCQQLLDEMTSERTRIISDLSVATRQLSTLQKLCRTL 383

Query: 519 QTERAEMLAKL 529
            +ER  +L+KL
Sbjct: 384 HSERQSLLSKL 394

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|156549776|ref|XP_001606274.1| PREDICTED: alpha-taxilin-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|307199540|gb|EFN80141.1| Alpha-taxilin [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|242005170|ref|XP_002423445.1| alpha-taxilin, putative [Pediculus humanus corporis] gi|212506523|gb|EEB10707.1| alpha-taxilin, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|291227350|ref|XP_002733649.1| PREDICTED: taxilin alpha-like [Saccoglossus kowalevskii] Back     alignment and taxonomy information
>gi|390363323|ref|XP_780699.3| PREDICTED: alpha-taxilin-like [Strongylocentrotus purpuratus] Back     alignment and taxonomy information
>gi|443722688|gb|ELU11448.1| hypothetical protein CAPTEDRAFT_104506, partial [Capitella teleta] Back     alignment and taxonomy information
>gi|113195552|ref|NP_001037776.1| gamma-taxilin [Danio rerio] gi|108742015|gb|AAI17597.1| Zgc:136409 [Danio rerio] gi|182890856|gb|AAI65594.1| Zgc:136409 protein [Danio rerio] Back     alignment and taxonomy information
>gi|149773476|ref|NP_001092700.1| alpha-taxilin [Danio rerio] gi|146218437|gb|AAI39889.1| Zgc:162882 protein [Danio rerio] Back     alignment and taxonomy information
>gi|194207761|ref|XP_001503891.2| PREDICTED: alpha-taxilin [Equus caballus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query565
MGI|MGI:105968554 Txlna "taxilin alpha" [Mus mus 0.444 0.453 0.335 3.9e-32
UNIPROTKB|P40222546 TXLNA "Alpha-taxilin" [Homo sa 0.444 0.459 0.332 5.8e-32
UNIPROTKB|E2QYI1550 TXLNA "Uncharacterized protein 0.444 0.456 0.332 1e-31
UNIPROTKB|J9PA47561 TXLNA "Uncharacterized protein 0.444 0.447 0.332 1.3e-31
UNIPROTKB|F1N4G3 738 TXLNB "Uncharacterized protein 0.562 0.430 0.294 1.6e-30
UNIPROTKB|E2QUX7 688 TXLNB "Uncharacterized protein 0.585 0.481 0.283 3.6e-30
UNIPROTKB|E1BGS4561 LOC100852159 "Uncharacterized 0.444 0.447 0.332 9.7e-30
ZFIN|ZDB-GENE-060616-122489 txlng "taxilin gamma" [Danio r 0.488 0.564 0.321 9.7e-30
UNIPROTKB|Q8N3L3 684 TXLNB "Beta-taxilin" [Homo sap 0.469 0.387 0.306 1.6e-29
UNIPROTKB|I3L8F8512 TXLNG "Uncharacterized protein 0.493 0.544 0.302 2e-29
MGI|MGI:105968 Txlna "taxilin alpha" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
 Score = 338 (124.0 bits), Expect = 3.9e-32, Sum P(2) = 3.9e-32
 Identities = 89/265 (33%), Positives = 152/265 (57%)

Query:   261 VMLQMFNDSQTPDEKFKIISQKYSELYHDF-NILSLLSKQNEKQIALLQNEKEILTLENS 319
             +++Q  N   TP+EK   + +KY+EL  +  N    +    +KQ  L+Q EK+ L  E+S
Sbjct:   174 LLMQTLNTLSTPEEKLAALCKKYAELLEEHRNSQKQMKLLQKKQSQLVQ-EKDHLRGEHS 232

Query:   320 KQELTREKLENLCRELQKQNKAIREENLQKFREEEEKRKNVSVKLENTLSEISNQVQESN 379
             K  L R KLE+LCRELQ+ N++++EE +Q+ REEEEKRK V+   + TL++I  Q+++ N
Sbjct:   233 KAVLARSKLESLCRELQRHNRSLKEEGVQRAREEEEKRKEVTSHFQVTLNDIQLQMEQHN 292

Query:   380 NKTMKLRGDNLDMAKKFRELLIQYDEKEQELLD-YKAKYLEMQKTENGLRKQISMYGEKY 438
              +  KLR +N+++A++ ++L+ QY+ +E+ +   +K K L+ Q  +  L++   M  E  
Sbjct:   293 ERNSKLRQENMELAERLKKLIEQYELREEHIDKVFKHKDLQQQLVDAKLQQAQEMLKEAE 352

Query:   439 DEFQQTLSRSNEIFAGFKSEMESMSSKINKLEKETATW-KQRWEKSHEAYLEMSNEKTKA 497
             +  Q    R  E     K  +ES   ++ +L K+  T  KQ+     E + E  N  +K+
Sbjct:   353 ERHQ----REKEFL--LKEAVESQ--RMCELMKQQETHLKQQLALYTEKFEEFQNTLSKS 404

Query:   498 ESELITTCRQ-LAALLKLCRTLQTE 521
              SE+ TT +Q +  + K  + L+ E
Sbjct:   405 -SEVFTTFKQEMEKMTKKIKKLEKE 428
GO:0006887 "exocytosis" evidence=IEA
GO:0019905 "syntaxin binding" evidence=IEA
GO:0042113 "B cell activation" evidence=IDA
UNIPROTKB|P40222 TXLNA "Alpha-taxilin" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2QYI1 TXLNA "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|J9PA47 TXLNA "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1N4G3 TXLNB "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2QUX7 TXLNB "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E1BGS4 LOC100852159 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060616-122 txlng "taxilin gamma" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q8N3L3 TXLNB "Beta-taxilin" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|I3L8F8 TXLNG "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query565
pfam09728309 pfam09728, Taxilin, Myosin-like coiled-coil protei 2e-40
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 1e-07
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 2e-05
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 5e-05
PTZ001212084 PTZ00121, PTZ00121, MAEBL; Provisional 6e-05
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 2e-04
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 5e-04
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 8e-04
PRK05306 746 PRK05306, infB, translation initiation factor IF-2 0.001
PTZ001081388 PTZ00108, PTZ00108, DNA topoisomerase 2-like prote 0.002
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 0.003
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 0.003
>gnl|CDD|220366 pfam09728, Taxilin, Myosin-like coiled-coil protein Back     alignment and domain information 
 Score =  148 bits (376), Expect = 2e-40
 Identities = 114/299 (38%), Positives = 171/299 (57%), Gaps = 39/299 (13%)

Query: 263 LQMFNDSQTPDEKFKIISQKYSELYHDFNILSLLSKQNEKQIALLQNEKEILTLENSKQE 322
            Q  +   TP+EK + + ++ +EL  +   L    K+ +K+   LQ EK+ L  E+SK  
Sbjct: 11  NQSLSKLDTPEEKLETLIKRLAELLKEMKRLEKDLKKLQKRGEQLQKEKDKLQSEHSKAI 70

Query: 323 LTREKLENLCRELQKQNKAIREENLQKFREEEEKRKNVSVKLENTLSEISNQVQESNNKT 382
           L R KLE+LCRELQK NK ++EEN  +  EEEEKRK ++ K ++TL +I +Q++E +N  
Sbjct: 71  LARSKLESLCRELQKHNKTLKEENKARSDEEEEKRKELTEKFQSTLKDIQDQMEEHSNPN 130

Query: 383 MKLRGDNLDMAKKFRELLIQYDEKEQ---------------------------------- 408
            KL  +N ++ +K +EL+ QY+ +EQ                                  
Sbjct: 131 HKLCEENEELREKLKELIEQYELREQHFEKLLKTKDLEQQLNDAKLEQAQEQAEQEQEKH 190

Query: 409 -----ELLDYKAKYLEMQKTENGLRKQISMYGEKYDEFQQTLSRSNEIFAGFKSEMESMS 463
                 LL   A+   +++TE  LR Q+++Y +K+ EFQ TL++SNE+F  FK EME MS
Sbjct: 191 KREKEILLKEAAQVSTLKETEKELRAQLNLYSDKFKEFQDTLNKSNEVFLTFKQEMEKMS 250

Query: 464 SKINKLEKETATWKQRWEKSHEAYLEMSNEKTKAESELITTCRQLAALLKLCRTLQTER 522
            KI KLEKE   WK++WEKS++A LEM+ E+ K + E+    +++  L KLCR LQ ER
Sbjct: 251 KKIKKLEKENLAWKRKWEKSNKALLEMAEERQKRDKEIEKLKKKIDKLEKLCRALQAER 309

Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca2+-dependent exocytosis in neuroendocrine cells. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription. Length = 309
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|235401 PRK05306, infB, translation initiation factor IF-2; Validated Back     alignment and domain information
>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 565
PF09728309 Taxilin: Myosin-like coiled-coil protein; InterPro 100.0
KOG1850|consensus391 100.0
TIGR02168 1179 SMC_prok_B chromosome segregation protein SMC, com 98.29
TIGR02168 1179 SMC_prok_B chromosome segregation protein SMC, com 98.27
TIGR02169 1164 SMC_prok_A chromosome segregation protein SMC, pri 98.26
COG1196 1163 Smc Chromosome segregation ATPases [Cell division 97.96
TIGR00606 1311 rad50 rad50. This family is based on the phylogeno 97.84
PRK02224 880 chromosome segregation protein; Provisional 97.82
PRK04778569 septation ring formation regulator EzrA; Provision 97.77
KOG0161|consensus 1930 97.54
KOG0161|consensus 1930 97.53
KOG4674|consensus 1822 97.49
PF07888 546 CALCOCO1: Calcium binding and coiled-coil domain ( 97.47
KOG4674|consensus 1822 97.46
PF00038312 Filament: Intermediate filament protein; InterPro: 97.42
COG1196 1163 Smc Chromosome segregation ATPases [Cell division 97.26
KOG1029|consensus 1118 97.03
PF07888546 CALCOCO1: Calcium binding and coiled-coil domain ( 96.96
PF05483786 SCP-1: Synaptonemal complex protein 1 (SCP-1); Int 96.94
TIGR00606 1311 rad50 rad50. This family is based on the phylogeno 96.8
KOG0612|consensus 1317 96.72
KOG0250|consensus 1074 96.72
PF05667594 DUF812: Protein of unknown function (DUF812); Inte 96.55
KOG0250|consensus 1074 96.38
PF13851201 GAS: Growth-arrest specific micro-tubule binding 96.38
PRK03918 880 chromosome segregation protein; Provisional 96.37
KOG0933|consensus 1174 96.36
PRK11637 428 AmiB activator; Provisional 96.35
PF00261237 Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop 95.79
PRK11637 428 AmiB activator; Provisional 95.75
KOG0996|consensus 1293 95.74
PRK03918 880 chromosome segregation protein; Provisional 95.7
PF09755310 DUF2046: Uncharacterized conserved protein H4 (DUF 95.55
PF00038312 Filament: Intermediate filament protein; InterPro: 95.35
PF01576 859 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu 95.19
PF06160560 EzrA: Septation ring formation regulator, EzrA ; I 95.16
TIGR03185 650 DNA_S_dndD DNA sulfur modification protein DndD. T 95.09
PF12128 1201 DUF3584: Protein of unknown function (DUF3584); In 94.89
PF10368204 YkyA: Putative cell-wall binding lipoprotein; Inte 94.86
KOG4643|consensus 1195 94.78
KOG0933|consensus 1174 94.75
PF13870177 DUF4201: Domain of unknown function (DUF4201) 94.35
PF12128 1201 DUF3584: Protein of unknown function (DUF3584); In 94.15
PHA02562 562 46 endonuclease subunit; Provisional 93.89
KOG0964|consensus 1200 93.73
PRK04863 1486 mukB cell division protein MukB; Provisional 93.45
KOG4643|consensus 1195 93.06
PF13851201 GAS: Growth-arrest specific micro-tubule binding 92.86
PF05010207 TACC: Transforming acidic coiled-coil-containing p 92.7
PF05701 522 WEMBL: Weak chloroplast movement under blue light; 92.62
PF09728309 Taxilin: Myosin-like coiled-coil protein; InterPro 92.51
KOG0980|consensus 980 92.31
PF04849306 HAP1_N: HAP1 N-terminal conserved region; InterPro 92.17
PF05557 722 MAD: Mitotic checkpoint protein; InterPro: IPR0086 92.13
KOG0980|consensus 980 91.94
COG1340294 Uncharacterized archaeal coiled-coil protein [Func 91.44
KOG0964|consensus 1200 90.9
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 90.78
KOG0977|consensus 546 90.43
PF15070 617 GOLGA2L5: Putative golgin subfamily A member 2-lik 90.11
PF08614194 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR 89.92
PLN02939 977 transferase, transferring glycosyl groups 89.78
PF01576 859 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu 88.98
KOG0999|consensus 772 88.87
KOG2129|consensus 552 88.67
PF12325120 TMF_TATA_bd: TATA element modulatory factor 1 TATA 88.65
PF10174 775 Cast: RIM-binding protein of the cytomatrix active 88.35
KOG0976|consensus 1265 87.66
PRK01156 895 chromosome segregation protein; Provisional 87.58
TIGR00634 563 recN DNA repair protein RecN. All proteins in this 87.05
KOG0978|consensus698 87.01
PF08614194 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR 86.94
PF10174 775 Cast: RIM-binding protein of the cytomatrix active 86.88
TIGR03752 472 conj_TIGR03752 integrating conjugative element pro 86.58
PRK04778 569 septation ring formation regulator EzrA; Provision 86.53
PF12718143 Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 86.08
COG0419 908 SbcC ATPase involved in DNA repair [DNA replicatio 85.82
PHA02562 562 46 endonuclease subunit; Provisional 85.7
KOG0996|consensus 1293 85.62
KOG4360|consensus 596 85.55
TIGR03185 650 DNA_S_dndD DNA sulfur modification protein DndD. T 85.31
PRK01156 895 chromosome segregation protein; Provisional 85.26
PF04156191 IncA: IncA protein; InterPro: IPR007285 Chlamydia 85.0
PF05622 713 HOOK: HOOK protein; InterPro: IPR008636 This famil 84.98
PF10226195 DUF2216: Uncharacterized conserved proteins (DUF22 84.45
PF05557 722 MAD: Mitotic checkpoint protein; InterPro: IPR0086 84.34
KOG0612|consensus 1317 83.8
PF05622 713 HOOK: HOOK protein; InterPro: IPR008636 This famil 82.83
KOG0018|consensus 1141 82.68
TIGR01843 423 type_I_hlyD type I secretion membrane fusion prote 82.67
PF10168717 Nup88: Nuclear pore component; InterPro: IPR019321 82.26
PF13166 712 AAA_13: AAA domain 82.23
KOG0946|consensus970 82.01
PF05483786 SCP-1: Synaptonemal complex protein 1 (SCP-1); Int 81.76
PF15254 861 CCDC14: Coiled-coil domain-containing protein 14 81.68
PF10212518 TTKRSYEDQ: Predicted coiled-coil domain-containing 81.13
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed Back     alignment and domain information 
Probab=100.00  E-value=2.5e-75  Score=586.29  Aligned_cols=268  Identities=43%  Similarity=0.685  Sum_probs=262.7

Q ss_pred             CCCcHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHH
Q psy825          255 EHPKTDVMLQMFNDSQTPDEKFKIISQKYSELYHDFNILSLLSKQNEKQIALLQNEKEILTLENSKQELTREKLENLCRE  334 (565)
Q Consensus       255 e~k~~~~LmqsLn~L~TpEEKle~L~KKYsELl~E~Rrlqkq~k~~qKk~dQLqKEKD~lqsEl~KaIlaKsKLEsLCRE  334 (565)
                      ..++.+.||++|++++||++||++|++||++++.+++++++++..++++++++++++|++++||+|+|++|+|||+||||
T Consensus         3 ~~K~~~~l~q~l~~l~~~eeK~~~L~kk~~ell~e~k~~~k~~~~~~Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCRE   82 (309)
T PF09728_consen    3 VKKAARQLMQSLNKLSSPEEKLEALCKKYAELLEEMKRLQKQLKKLQKKQEQLQKEKDQLQSELSKAILAKSKLESLCRE   82 (309)
T ss_pred             hhhHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccccchhhhccHHHHHHHHHHHHHHHHHHHHHHH--
Q psy825          335 LQKQNKAIREENLQKFREEEEKRKNVSVKLENTLSEISNQVQESNNKTMKLRGDNLDMAKKFRELLIQYDEKEQELLD--  412 (565)
Q Consensus       335 LQKqNK~LKEEnk~r~~EEEeKRkELseKFQ~tL~DIq~qMEE~~~~n~KL~~EN~eL~eKLKsLIEQYElREehf~K--  412 (565)
                      ||++|+.|++|+++++++++.+|.++++||+++|+||+.+|+++++++.+++.+|..|++||++||+||++||+||++  
T Consensus        83 LQk~Nk~lkeE~~~~~~eee~kR~el~~kFq~~L~dIq~~~ee~~~~~~k~~~eN~~L~eKlK~l~eQye~rE~~~~~~~  162 (309)
T PF09728_consen   83 LQKQNKKLKEESKRRAREEEEKRKELSEKFQATLKDIQAQMEEQSERNIKLREENEELREKLKSLIEQYELREEHFEKLL  162 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999986  


Q ss_pred             ------------------------------HHH-------HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHH
Q psy825          413 ------------------------------YKA-------KYLEMQKTENGLRKQISMYGEKYDEFQQTLSRSNEIFAGF  455 (565)
Q Consensus       413 ------------------------------lq~-------Qv~~L~etE~eLR~QLniY~EKFeEFQDTL~KSNEvF~TF  455 (565)
                                                    ++.       +|..|.++|++||.||++|++||++|||||+|||++|+||
T Consensus       163 k~keLE~Ql~~AKl~q~~~~~~~e~~k~~~~~~~~l~~~~~~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tf  242 (309)
T PF09728_consen  163 KQKELEVQLAEAKLEQQQEEAEQEKEKAKQEKEILLEEAAQVQTLKETEKELREQLNLYSEKFEEFQDTLNKSNEVFETF  242 (309)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence                                          456       8889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825          456 KSEMESMSSKINKLEKETATWKQRWEKSHEAYLEMSNEKTKAESELITTCRQLAALLKLCRTLQTER  522 (565)
Q Consensus       456 KkEMEKMSKKiKKLEKEn~~wKrK~E~sNkaLleMaEER~k~~kEle~l~kKieKLE~LCRALQ~ER  522 (565)
                      |+||++|+|+|++||||+..|++|||++|++||+|++||+.+.++++.+.+|+++|++|||+||+||
T Consensus       243 k~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe~LcRaLQ~er  309 (309)
T PF09728_consen  243 KKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKLEKLCRALQAER  309 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999997

It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
>KOG1850|consensus Back     alignment and domain information
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>PRK04778 septation ring formation regulator EzrA; Provisional Back     alignment and domain information
>KOG0161|consensus Back     alignment and domain information
>KOG0161|consensus Back     alignment and domain information
>KOG4674|consensus Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>KOG4674|consensus Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG1029|consensus Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>KOG0612|consensus Back     alignment and domain information
>KOG0250|consensus Back     alignment and domain information
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information
>KOG0250|consensus Back     alignment and domain information
>PF13851 GAS: Growth-arrest specific micro-tubule binding Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>KOG0933|consensus Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>KOG0996|consensus Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril Back     alignment and domain information
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site Back     alignment and domain information
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>PF10368 YkyA: Putative cell-wall binding lipoprotein; InterPro: IPR019454 The YkyA family of proteins contain a lipoprotein signal and a hydrolase domain Back     alignment and domain information
>KOG4643|consensus Back     alignment and domain information
>KOG0933|consensus Back     alignment and domain information
>PF13870 DUF4201: Domain of unknown function (DUF4201) Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>KOG0964|consensus Back     alignment and domain information
>PRK04863 mukB cell division protein MukB; Provisional Back     alignment and domain information
>KOG4643|consensus Back     alignment and domain information
>PF13851 GAS: Growth-arrest specific micro-tubule binding Back     alignment and domain information
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules Back     alignment and domain information
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function Back     alignment and domain information
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed Back     alignment and domain information
>KOG0980|consensus Back     alignment and domain information
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues Back     alignment and domain information
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins Back     alignment and domain information
>KOG0980|consensus Back     alignment and domain information
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown] Back     alignment and domain information
>KOG0964|consensus Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>KOG0977|consensus Back     alignment and domain information
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5 Back     alignment and domain information
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells Back     alignment and domain information
>PLN02939 transferase, transferring glycosyl groups Back     alignment and domain information
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril Back     alignment and domain information
>KOG0999|consensus Back     alignment and domain information
>KOG2129|consensus Back     alignment and domain information
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes [] Back     alignment and domain information
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] Back     alignment and domain information
>KOG0976|consensus Back     alignment and domain information
>PRK01156 chromosome segregation protein; Provisional Back     alignment and domain information
>TIGR00634 recN DNA repair protein RecN Back     alignment and domain information
>KOG0978|consensus Back     alignment and domain information
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells Back     alignment and domain information
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] Back     alignment and domain information
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family Back     alignment and domain information
>PRK04778 septation ring formation regulator EzrA; Provisional Back     alignment and domain information
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>KOG0996|consensus Back     alignment and domain information
>KOG4360|consensus Back     alignment and domain information
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD Back     alignment and domain information
>PRK01156 chromosome segregation protein; Provisional Back     alignment and domain information
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion Back     alignment and domain information
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms Back     alignment and domain information
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain Back     alignment and domain information
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins Back     alignment and domain information
>KOG0612|consensus Back     alignment and domain information
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms Back     alignment and domain information
>KOG0018|consensus Back     alignment and domain information
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family Back     alignment and domain information
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs Back     alignment and domain information
>PF13166 AAA_13: AAA domain Back     alignment and domain information
>KOG0946|consensus Back     alignment and domain information
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex Back     alignment and domain information
>PF15254 CCDC14: Coiled-coil domain-containing protein 14 Back     alignment and domain information
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query565
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-08
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 2e-09
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 2e-09
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 5e-08
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 1e-07
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 3e-04
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 1e-06
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 4e-06
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 3e-05
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 5e-05
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 2e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 73.0 bits (178), Expect = 1e-13
 Identities = 84/536 (15%), Positives = 169/536 (31%), Gaps = 119/536 (22%)

Query: 76  VESENKTNENSKEDTVKIDTEVKKKEVDETVKKNEVELKSKEEVKSEVLKEVEKESKKEE 135
           ++ E   ++   +D + +  +      D      +V+   K  +  E +  +        
Sbjct: 7   MDFETGEHQYQYKDILSVFEDAFVDNFD----CKDVQDMPKSILSKEEIDHIIMSKDAVS 62

Query: 136 KT---VDKKEQEQKN------DDKNMKNEN--KDAIKVEEKKNNEGDKSVAKIEVDQKSK 184
            T         +Q+       ++    N       IK E++       S   +      +
Sbjct: 63  GTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQR-----QPS---MMTRMYIE 114

Query: 185 ESDKAKTDTEQKNKELKNVKKTEPDQKNKEGLKNNDKKQQQDKN------KKQGKTSPPD 238
           + D+   D +   K   NV + +P  K ++ L     + +  KN         GKT    
Sbjct: 115 QRDRLYNDNQVFAK--YNVSRLQPYLKLRQAL----LELRPAKNVLIDGVLGSGKTW--- 165

Query: 239 TGASVNAVKTPAV-----------SIKEHPKTDVMLQMFND-SQTPDEKFKIISQKYSEL 286
              +++   +  V           ++K     + +L+M        D  +   S   S +
Sbjct: 166 --VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223

Query: 287 YHDFNI----LSLLSKQNEKQIALL-----QNEKEILTLENSKQEL--TREKLENLCREL 335
               +     L  L K    +  LL     QN K       S + L  TR K   +   L
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFK--QVTDFL 281

Query: 336 QKQN-KAIREENLQKFREEEEKRKNVSVKLENTLSEISNQVQESNNKTMKLRGDNLDMAK 394
                  I  ++       +E +  +   L+    ++  +V  +N + + +      +A+
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI------IAE 335

Query: 395 KFRELLIQYDEKEQELLDYKAKYLEM---QKTENGLRKQISMYGEKYDEF---------- 441
             R+ L  +D  +    D     +E           RK        +D            
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM-------FDRLSVFPPSAHIP 388

Query: 442 QQTLSR--SNEIFAGFKSEMESMSSKINKLEKETATWKQRWEKS-----HEAYLEMSNEK 494
              LS    + I    KS++  +   +NKL K +    ++  K         YLE+   K
Sbjct: 389 TILLSLIWFDVI----KSDVMVV---VNKLHKYSLV--EKQPKESTISIPSIYLEL---K 436

Query: 495 TKAESELITTCRQL-AALLKLCRTLQTERAEMLAKLNGAGGYSYLILSY-MKKFDR 548
            K E+E       L  +++      +T  ++ L        Y Y  + + +K  + 
Sbjct: 437 VKLENE-----YALHRSIVDHYNIPKTFDSDDLIPPY-LDQYFYSHIGHHLKNIEH 486
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query565
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 98.43
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 98.35
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 97.81
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 97.38
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 97.16
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 94.92
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 94.19
3u1c_A101 Tropomyosin alpha-1 chain; anti-parallel coiled co 93.28
3tnu_B129 Keratin, type II cytoskeletal 5; coiled-coil, stru 92.56
3u59_A101 Tropomyosin beta chain; muscle contraction, actin, 92.52
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 92.46
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 91.51
3tnu_A131 Keratin, type I cytoskeletal 14; coiled-coil, stru 90.38
2a01_A243 Apolipoprotein A-I; four-helix bundle, lipid trans 89.94
3o0z_A168 RHO-associated protein kinase 1; coiled-coil, tran 89.83
3o0z_A168 RHO-associated protein kinase 1; coiled-coil, tran 89.13
1ic2_A81 Tropomyosin alpha chain, skeletal muscle; alpha-he 87.74
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 87.4
3oja_A487 Leucine-rich immune molecule 1; coiled-coil, helix 85.01
3trt_A77 Vimentin; cytoskeleton, intermediate filament, alp 83.45
2v71_A189 Nuclear distribution protein NUDE-like 1; developm 83.22
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 82.43
3ghg_A 562 Fibrinogen alpha chain; triple-stranded coiled coi 82.27
2v71_A189 Nuclear distribution protein NUDE-like 1; developm 81.23
3bas_A89 Myosin heavy chain, striated muscle/general contro 80.28
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Back     alignment and structure
Probab=98.43  E-value=0.00087  Score=60.07  Aligned_cols=75  Identities=17%  Similarity=0.152  Sum_probs=35.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825          455 FKSEMESMSSKINKLEKETATWKQRWEKSHEAYLEMSNEKTKAESELITTCRQLAALLKLCRTLQTERAEMLAKL  529 (565)
Q Consensus       455 FKkEMEKMSKKiKKLEKEn~~wKrK~E~sNkaLleMaEER~k~~kEle~l~kKieKLE~LCRALQ~ER~~L~~kL  529 (565)
                      +..+++.+...+..++.+...+..........+-.+-.........+..+...+..+..-+..+..+...+...|
T Consensus       207 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  281 (284)
T 1c1g_A          207 LEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDM  281 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            334444444444444444444444444444444444444444444444444444444444444444444444444
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A Back     alignment and structure
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens} Back     alignment and structure
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus} Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens} Back     alignment and structure
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0* Back     alignment and structure
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} Back     alignment and structure
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} Back     alignment and structure
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A* Back     alignment and structure
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G* Back     alignment and structure
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} Back     alignment and structure
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query565
d2ap3a1185 Hypothetical protein MW0975 (SA0943) {Staphylococc 89.73
d2ap3a1185 Hypothetical protein MW0975 (SA0943) {Staphylococc 86.11
>d2ap3a1 a.24.27.1 (A:12-196) Hypothetical protein MW0975 (SA0943) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: MW0975(SA0943)-like
family: MW0975(SA0943)-like
domain: Hypothetical protein MW0975 (SA0943)
species: Staphylococcus aureus [TaxId: 1280]

Probab=89.73  E-value=3.5  Score=31.91  Aligned_cols=43  Identities=23%  Similarity=0.204  Sum_probs=19.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy825          392 MAKKFRELLIQYDEKEQELLDYKAKYLEMQKTENGLRKQISMY  434 (565)
Q Consensus       392 L~eKLKsLIEQYElREehf~Klq~Qv~~L~etE~eLR~QLniY  434 (565)
                      +...+..+...+..+...+..+...+..+......+...+...
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (185)
T d2ap3a1         100 KRKEVKQLDDVLKEKYKLHSDYAKAYKKAVNSEKTLFKYLNQN  142 (185)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTST
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhh
Confidence            4444555555555554444444444444444444444443333
>d2ap3a1 a.24.27.1 (A:12-196) Hypothetical protein MW0975 (SA0943) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure