Psyllid ID: psy8266

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------
Protein Sequence
MISLKPPPKDGVTKSNPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRTKSYFQEM
Secondary Structure (PSIPRED)
ccccccccccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mislkpppkdgvtksnpskrHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRTKSYFQEM
Flexible Loop (DISEMBL)
mislkpppkdgvtksnpskrhRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRTKSYFQEM
Low Complexity Region (SEG)
MISLKPPPKDGVTKSNPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRTKSYFQEM
Disordered region (IsUnstruct)
****************************LDTLANLLPFEQNILSKLDRLSILRLSVSYLRTKSY****
Disordered Region (DISOPRED)
*************************NAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRTKSYFQEM
Disordered Region (DISEMBL)
*******************RHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRTKSYFQEM
Disordered Region (DISPRO)
********************HRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRTKSYFQE*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MISLKPPPKDGVTKSNPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRTKSYFQEM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	68	2.2.26 [Sep-21-2011]
P41738	853	Aryl hydrocarbon receptor	yes	N/A	0.911	0.072	0.682	1e-18
Q8R4S5	883	Aryl hydrocarbon receptor	N/A	N/A	0.911	0.070	0.682	1e-18
Q8R4S4	854	Aryl hydrocarbon receptor	N/A	N/A	0.911	0.072	0.682	1e-18
Q8R4S6	848	Aryl hydrocarbon receptor	N/A	N/A	0.911	0.073	0.682	2e-18
Q8R4S2	854	Aryl hydrocarbon receptor	N/A	N/A	0.911	0.072	0.682	2e-18
P30561	848	Aryl hydrocarbon receptor	yes	N/A	0.911	0.073	0.682	2e-18
Q8R4S7	854	Aryl hydrocarbon receptor	N/A	N/A	0.911	0.072	0.682	2e-18
P35869	848	Aryl hydrocarbon receptor	yes	N/A	0.911	0.073	0.682	2e-18
Q95LD9	845	Aryl hydrocarbon receptor	N/A	N/A	0.911	0.073	0.682	2e-18
O02747	847	Aryl hydrocarbon receptor	yes	N/A	0.911	0.073	0.682	2e-18

>sp|P41738|AHR_RAT Aryl hydrocarbon receptor OS=Rattus norvegicus GN=Ahr PE=1 SV=2

 Score = 91.7 bits (226), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 43/63 (68%), Positives = 56/63 (88%), Gaps = 1/63 (1%)

Query: 3  SLKPPPKDGVTKSNPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRTK 62
          ++KP P +G+ KSNPSKRHR+RLN ELD LA+LLPF Q++++KLD+LS+LRLSVSYLR K
Sbjct: 21 TVKPVPAEGI-KSNPSKRHRDRLNTELDRLASLLPFPQDVINKLDKLSVLRLSVSYLRAK 79

Query: 63 SYF 65
          S+F
Sbjct: 80 SFF 82

Ligand-activated transcriptional activator. Binds to the XRE promoter region of genes it activates. Activates the expression of multiple phase I and II xenobiotic chemical metabolizing enzyme genes (such as the CYP1A1 gene). Mediates biochemical and toxic effects of halogenated aromatic hydrocarbons. Involved in cell-cycle regulation. Likely to play an important role in the development and maturation of many tissues.
Rattus norvegicus (taxid: 10116)

>sp|Q8R4S5|AHR_MUSMM Aryl hydrocarbon receptor OS=Mus musculus molossinus GN=Ahr PE=2 SV=1

 Score = 91.3 bits (225), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 43/63 (68%), Positives = 56/63 (88%), Gaps = 1/63 (1%)

Query: 3  SLKPPPKDGVTKSNPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRTK 62
          ++KP P +G+ KSNPSKRHR+RLN ELD LA+LLPF Q++++KLD+LS+LRLSVSYLR K
Sbjct: 21 TVKPIPAEGI-KSNPSKRHRDRLNTELDRLASLLPFPQDVINKLDKLSVLRLSVSYLRAK 79

Query: 63 SYF 65
          S+F
Sbjct: 80 SFF 82

Ligand-activated transcriptional activator. Binds to the XRE promoter region of genes it activates. Activates the expression of multiple phase I and II xenobiotic chemical metabolizing enzyme genes (such as the CYP1A1 gene). Mediates biochemical and toxic effects of halogenated aromatic hydrocarbons. Involved in cell-cycle regulation. Likely to play an important role in the development and maturation of many tissues.

Mus musculus molossinus (taxid: 57486)

>sp|Q8R4S4|AHR_MUSSI Aryl hydrocarbon receptor OS=Mus spicilegus GN=Ahr PE=2 SV=1

 Score = 91.3 bits (225), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 43/63 (68%), Positives = 56/63 (88%), Gaps = 1/63 (1%)

Query: 3  SLKPPPKDGVTKSNPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRTK 62
          ++KP P +G+ KSNPSKRHR+RLN ELD LA+LLPF Q++++KLD+LS+LRLSVSYLR K
Sbjct: 21 TVKPIPAEGI-KSNPSKRHRDRLNTELDRLASLLPFPQDVINKLDKLSVLRLSVSYLRAK 79

Query: 63 SYF 65
          S+F
Sbjct: 80 SFF 82

Ligand-activated transcriptional activator. Binds to the XRE promoter region of genes it activates. Activates the expression of multiple phase I and II xenobiotic chemical metabolizing enzyme genes (such as the CYP1A1 gene). Mediates biochemical and toxic effects of halogenated aromatic hydrocarbons. Involved in cell-cycle regulation. Likely to play an important role in the development and maturation of many tissues.

Mus spicilegus (taxid: 10103)

>sp|Q8R4S6|AHR_MUSMC Aryl hydrocarbon receptor OS=Mus musculus castaneus GN=Ahr PE=2 SV=1

 Score = 91.3 bits (225), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 43/63 (68%), Positives = 56/63 (88%), Gaps = 1/63 (1%)

Query: 3  SLKPPPKDGVTKSNPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRTK 62
          ++KP P +G+ KSNPSKRHR+RLN ELD LA+LLPF Q++++KLD+LS+LRLSVSYLR K
Sbjct: 21 TVKPIPAEGI-KSNPSKRHRDRLNTELDRLASLLPFPQDVINKLDKLSVLRLSVSYLRAK 79

Query: 63 SYF 65
          S+F
Sbjct: 80 SFF 82

Ligand-activated transcriptional activator. Binds to the XRE promoter region of genes it activates. Activates the expression of multiple phase I and II xenobiotic chemical metabolizing enzyme genes (such as the CYP1A1 gene). Mediates biochemical and toxic effects of halogenated aromatic hydrocarbons. Involved in cell-cycle regulation. Likely to play an important role in the development and maturation of many tissues.

Mus musculus castaneus (taxid: 10091)

>sp|Q8R4S2|AHR_MUSSP Aryl hydrocarbon receptor OS=Mus spretus GN=Ahr PE=2 SV=1

 Score = 91.3 bits (225), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 43/63 (68%), Positives = 56/63 (88%), Gaps = 1/63 (1%)

Query: 3  SLKPPPKDGVTKSNPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRTK 62
          ++KP P +G+ KSNPSKRHR+RLN ELD LA+LLPF Q++++KLD+LS+LRLSVSYLR K
Sbjct: 21 TVKPIPAEGI-KSNPSKRHRDRLNTELDRLASLLPFPQDVINKLDKLSVLRLSVSYLRAK 79

Query: 63 SYF 65
          S+F
Sbjct: 80 SFF 82

Ligand-activated transcriptional activator. Binds to the XRE promoter region of genes it activates. Activates the expression of multiple phase I and II xenobiotic chemical metabolizing enzyme genes (such as the CYP1A1 gene). Mediates biochemical and toxic effects of halogenated aromatic hydrocarbons. Involved in cell-cycle regulation. Likely to play an important role in the development and maturation of many tissues.

Mus spretus (taxid: 10096)

>sp|P30561|AHR_MOUSE Aryl hydrocarbon receptor OS=Mus musculus GN=Ahr PE=1 SV=3

 Score = 91.3 bits (225), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 43/63 (68%), Positives = 56/63 (88%), Gaps = 1/63 (1%)

Query: 3  SLKPPPKDGVTKSNPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRTK 62
          ++KP P +G+ KSNPSKRHR+RLN ELD LA+LLPF Q++++KLD+LS+LRLSVSYLR K
Sbjct: 21 TVKPIPAEGI-KSNPSKRHRDRLNTELDRLASLLPFPQDVINKLDKLSVLRLSVSYLRAK 79

Query: 63 SYF 65
          S+F
Sbjct: 80 SFF 82

Ligand-activated transcriptional activator. Binds to the XRE promoter region of genes it activates. Activates the expression of multiple phase I and II xenobiotic chemical metabolizing enzyme genes (such as the CYP1A1 gene). Mediates biochemical and toxic effects of halogenated aromatic hydrocarbons. Involved in cell-cycle regulation. Likely to play an important role in the development and maturation of many tissues.

Mus musculus (taxid: 10090)

>sp|Q8R4S7|AHR_MUSCR Aryl hydrocarbon receptor OS=Mus caroli GN=Ahr PE=2 SV=1

 Score = 91.3 bits (225), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 43/63 (68%), Positives = 56/63 (88%), Gaps = 1/63 (1%)

Query: 3  SLKPPPKDGVTKSNPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRTK 62
          ++KP P +G+ KSNPSKRHR+RLN ELD LA+LLPF Q++++KLD+LS+LRLSVSYLR K
Sbjct: 21 TVKPIPAEGI-KSNPSKRHRDRLNTELDRLASLLPFPQDVINKLDKLSVLRLSVSYLRAK 79

Query: 63 SYF 65
          S+F
Sbjct: 80 SFF 82

Ligand-activated transcriptional activator. Binds to the XRE promoter region of genes it activates. Activates the expression of multiple phase I and II xenobiotic chemical metabolizing enzyme genes (such as the CYP1A1 gene). Mediates biochemical and toxic effects of halogenated aromatic hydrocarbons. Involved in cell-cycle regulation. Likely to play an important role in the development and maturation of many tissues.

Mus caroli (taxid: 10089)

>sp|P35869|AHR_HUMAN Aryl hydrocarbon receptor OS=Homo sapiens GN=AHR PE=1 SV=2

 Score = 91.3 bits (225), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 43/63 (68%), Positives = 56/63 (88%), Gaps = 1/63 (1%)

Query: 3  SLKPPPKDGVTKSNPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRTK 62
          ++KP P +G+ KSNPSKRHR+RLN ELD LA+LLPF Q++++KLD+LS+LRLSVSYLR K
Sbjct: 22 TVKPIPAEGI-KSNPSKRHRDRLNTELDRLASLLPFPQDVINKLDKLSVLRLSVSYLRAK 80

Query: 63 SYF 65
          S+F
Sbjct: 81 SFF 83

Ligand-activated transcriptional activator. Binds to the XRE promoter region of genes it activates. Activates the expression of multiple phase I and II xenobiotic chemical metabolizing enzyme genes (such as the CYP1A1 gene). Mediates biochemical and toxic effects of halogenated aromatic hydrocarbons. Involved in cell-cycle regulation. Likely to play an important role in the development and maturation of many tissues.

Homo sapiens (taxid: 9606)

>sp|Q95LD9|AHR_DELLE Aryl hydrocarbon receptor OS=Delphinapterus leucas GN=AHR PE=2 SV=1

 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 43/63 (68%), Positives = 56/63 (88%), Gaps = 1/63 (1%)

Query: 3  SLKPPPKDGVTKSNPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRTK 62
          ++KP P +G+ KSNPSKRHR+RLN ELD LA+LLPF Q++++KLD+LS+LRLSVSYLR K
Sbjct: 22 TVKPVPAEGI-KSNPSKRHRDRLNTELDRLASLLPFPQDVVNKLDKLSVLRLSVSYLRAK 80

Query: 63 SYF 65
          S+F
Sbjct: 81 SFF 83

Ligand-activated transcriptional activator. Binds to the XRE promoter region of genes it activates. Activates the expression of multiple phase I and II xenobiotic chemical metabolizing enzyme genes (such as the CYP1A1 gene). Mediates biochemical and toxic effects of halogenated aromatic hydrocarbons. Involved in cell-cycle regulation. Likely to play an important role in the development and maturation of many tissues.

Delphinapterus leucas (taxid: 9749)

>sp|O02747|AHR_RABIT Aryl hydrocarbon receptor OS=Oryctolagus cuniculus GN=AHR PE=2 SV=1

 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 43/63 (68%), Positives = 56/63 (88%), Gaps = 1/63 (1%)

Query: 3  SLKPPPKDGVTKSNPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRTK 62
          ++KP P +G+ KSNPSKRHR+RLN ELD LA+LLPF Q++++KLD+LS+LRLSVSYLR K
Sbjct: 22 TVKPIPAEGI-KSNPSKRHRDRLNTELDRLASLLPFPQDVINKLDKLSVLRLSVSYLRAK 80

Query: 63 SYF 65
          S+F
Sbjct: 81 SFF 83

Ligand-activated transcriptional activator. Binds to the XRE promoter region of genes it activates. Activates the expression of multiple phase I and II xenobiotic chemical metabolizing enzyme genes (such as the CYP1A1 gene). Mediates biochemical and toxic effects of halogenated aromatic hydrocarbons. Involved in cell-cycle regulation. Likely to play an important role in the development and maturation of many tissues.

Oryctolagus cuniculus (taxid: 9986)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	68
195500996	1062	GE26316 [Drosophila yakuba] gi|194183713	0.941	0.060	0.968	2e-27
195107625	1064	GI23647 [Drosophila mojavensis] gi|19391	0.941	0.060	0.968	2e-27
194901278	1057	GG19993 [Drosophila erecta] gi|190651882	0.941	0.060	0.968	2e-27
195152766	1100	GL22243 [Drosophila persimilis] gi|19411	0.941	0.058	0.968	2e-27
386765904	1015	spineless, isoform C [Drosophila melanog	0.941	0.063	0.968	2e-27
195037953	1082	GH18248 [Drosophila grimshawi] gi|193894	0.941	0.059	0.968	2e-27
195389004	1099	GJ23490 [Drosophila virilis] gi|19415125	0.941	0.058	0.968	2e-27
195451109	1031	GK13504 [Drosophila willistoni] gi|19416	0.941	0.062	0.968	2e-27
390178920	878	GA20013, isoform B [Drosophila pseudoobs	0.955	0.074	0.953	2e-27
3132524	884	Ahr homolog spineless [Drosophila melano	0.941	0.072	0.968	2e-27

>gi|195500996|ref|XP_002097612.1| GE26316 [Drosophila yakuba] gi|194183713|gb|EDW97324.1| GE26316 [Drosophila yakuba]

 Score =  126 bits (316), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 62/64 (96%), Positives = 63/64 (98%)

Query: 3  SLKPPPKDGVTKSNPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRTK 62
          SLKPPPKDGVTKSNPSKRHRERLNAELD LA+LLPFEQNILSKLDRLSILRLSVSYLRTK
Sbjct: 19 SLKPPPKDGVTKSNPSKRHRERLNAELDLLASLLPFEQNILSKLDRLSILRLSVSYLRTK 78

Query: 63 SYFQ 66
          SYFQ
Sbjct: 79 SYFQ 82

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195107625|ref|XP_001998409.1| GI23647 [Drosophila mojavensis] gi|193915003|gb|EDW13870.1| GI23647 [Drosophila mojavensis]

 Score =  126 bits (316), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 62/64 (96%), Positives = 63/64 (98%)

Query: 3  SLKPPPKDGVTKSNPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRTK 62
          SLKPPPKDGVTKSNPSKRHRERLNAELD LA+LLPFEQNILSKLDRLSILRLSVSYLRTK
Sbjct: 19 SLKPPPKDGVTKSNPSKRHRERLNAELDLLASLLPFEQNILSKLDRLSILRLSVSYLRTK 78

Query: 63 SYFQ 66
          SYFQ
Sbjct: 79 SYFQ 82

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194901278|ref|XP_001980179.1| GG19993 [Drosophila erecta] gi|190651882|gb|EDV49137.1| GG19993 [Drosophila erecta]

 Score =  126 bits (316), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 62/64 (96%), Positives = 63/64 (98%)

Query: 3  SLKPPPKDGVTKSNPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRTK 62
          SLKPPPKDGVTKSNPSKRHRERLNAELD LA+LLPFEQNILSKLDRLSILRLSVSYLRTK
Sbjct: 19 SLKPPPKDGVTKSNPSKRHRERLNAELDLLASLLPFEQNILSKLDRLSILRLSVSYLRTK 78

Query: 63 SYFQ 66
          SYFQ
Sbjct: 79 SYFQ 82

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195152766|ref|XP_002017307.1| GL22243 [Drosophila persimilis] gi|194112364|gb|EDW34407.1| GL22243 [Drosophila persimilis]

 Score =  126 bits (316), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 62/64 (96%), Positives = 63/64 (98%)

Query: 3  SLKPPPKDGVTKSNPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRTK 62
          SLKPPPKDGVTKSNPSKRHRERLNAELD LA+LLPFEQNILSKLDRLSILRLSVSYLRTK
Sbjct: 19 SLKPPPKDGVTKSNPSKRHRERLNAELDLLASLLPFEQNILSKLDRLSILRLSVSYLRTK 78

Query: 63 SYFQ 66
          SYFQ
Sbjct: 79 SYFQ 82

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|386765904|ref|NP_001247140.1| spineless, isoform C [Drosophila melanogaster] gi|386765906|ref|NP_001163629.2| spineless, isoform D [Drosophila melanogaster] gi|383292749|gb|AFH06458.1| spineless, isoform C [Drosophila melanogaster] gi|383292750|gb|ACZ94925.2| spineless, isoform D [Drosophila melanogaster]

 Score =  126 bits (316), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 62/64 (96%), Positives = 63/64 (98%)

Query: 3  SLKPPPKDGVTKSNPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRTK 62
          SLKPPPKDGVTKSNPSKRHRERLNAELD LA+LLPFEQNILSKLDRLSILRLSVSYLRTK
Sbjct: 19 SLKPPPKDGVTKSNPSKRHRERLNAELDLLASLLPFEQNILSKLDRLSILRLSVSYLRTK 78

Query: 63 SYFQ 66
          SYFQ
Sbjct: 79 SYFQ 82

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195037953|ref|XP_001990425.1| GH18248 [Drosophila grimshawi] gi|193894621|gb|EDV93487.1| GH18248 [Drosophila grimshawi]

 Score =  126 bits (316), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 62/64 (96%), Positives = 63/64 (98%)

Query: 3  SLKPPPKDGVTKSNPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRTK 62
          SLKPPPKDGVTKSNPSKRHRERLNAELD LA+LLPFEQNILSKLDRLSILRLSVSYLRTK
Sbjct: 19 SLKPPPKDGVTKSNPSKRHRERLNAELDLLASLLPFEQNILSKLDRLSILRLSVSYLRTK 78

Query: 63 SYFQ 66
          SYFQ
Sbjct: 79 SYFQ 82

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195389004|ref|XP_002053168.1| GJ23490 [Drosophila virilis] gi|194151254|gb|EDW66688.1| GJ23490 [Drosophila virilis]

 Score =  126 bits (316), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 62/64 (96%), Positives = 63/64 (98%)

Query: 3  SLKPPPKDGVTKSNPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRTK 62
          SLKPPPKDGVTKSNPSKRHRERLNAELD LA+LLPFEQNILSKLDRLSILRLSVSYLRTK
Sbjct: 19 SLKPPPKDGVTKSNPSKRHRERLNAELDLLASLLPFEQNILSKLDRLSILRLSVSYLRTK 78

Query: 63 SYFQ 66
          SYFQ
Sbjct: 79 SYFQ 82

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195451109|ref|XP_002072771.1| GK13504 [Drosophila willistoni] gi|194168856|gb|EDW83757.1| GK13504 [Drosophila willistoni]

 Score =  126 bits (316), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 62/64 (96%), Positives = 63/64 (98%)

Query: 3  SLKPPPKDGVTKSNPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRTK 62
          SLKPPPKDGVTKSNPSKRHRERLNAELD LA+LLPFEQNILSKLDRLSILRLSVSYLRTK
Sbjct: 19 SLKPPPKDGVTKSNPSKRHRERLNAELDLLASLLPFEQNILSKLDRLSILRLSVSYLRTK 78

Query: 63 SYFQ 66
          SYFQ
Sbjct: 79 SYFQ 82

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|390178920|ref|XP_001359453.3| GA20013, isoform B [Drosophila pseudoobscura pseudoobscura] gi|388859639|gb|EAL28599.3| GA20013, isoform B [Drosophila pseudoobscura pseudoobscura]

 Score =  125 bits (315), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 62/65 (95%), Positives = 63/65 (96%)

Query: 2  ISLKPPPKDGVTKSNPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRT 61
           SLKPPPKDGVTKSNPSKRHRERLNAELD LA+LLPFEQNILSKLDRLSILRLSVSYLRT
Sbjct: 8  CSLKPPPKDGVTKSNPSKRHRERLNAELDLLASLLPFEQNILSKLDRLSILRLSVSYLRT 67

Query: 62 KSYFQ 66
          KSYFQ
Sbjct: 68 KSYFQ 72

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|3132524|gb|AAD09205.1| Ahr homolog spineless [Drosophila melanogaster]

 Score =  125 bits (315), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 62/64 (96%), Positives = 63/64 (98%)

Query: 3  SLKPPPKDGVTKSNPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRTK 62
          SLKPPPKDGVTKSNPSKRHRERLNAELD LA+LLPFEQNILSKLDRLSILRLSVSYLRTK
Sbjct: 19 SLKPPPKDGVTKSNPSKRHRERLNAELDLLASLLPFEQNILSKLDRLSILRLSVSYLRTK 78

Query: 63 SYFQ 66
          SYFQ
Sbjct: 79 SYFQ 82

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	68
FB|FBgn0003513	1048	ss "spineless" [Drosophila mel	0.941	0.061	0.968	2e-26
UNIPROTKB|F1SEI6	385	F1SEI6 "Uncharacterized protei	0.941	0.166	0.661	8.9e-19
UNIPROTKB|E5RFG4	157	AHRR "Aryl hydrocarbon recepto	0.911	0.394	0.725	1.4e-18
UNIPROTKB|E5RGQ2	81	AHRR "Aryl hydrocarbon recepto	0.911	0.765	0.725	1.4e-18
UNIPROTKB|G3V143	139	AHRR "Aryl hydrocarbon recepto	0.911	0.446	0.725	1.4e-18
UNIPROTKB|I3L5U3	394	I3L5U3 "Uncharacterized protei	0.911	0.157	0.682	1.7e-18
UNIPROTKB|F1NLX8	839	AHR "Uncharacterized protein"	0.897	0.072	0.725	2.4e-18
UNIPROTKB|G3V6M2	853	Ahr "RCG61977, isoform CRA_b"	0.911	0.072	0.698	4e-18
RGD|2074	853	Ahr "aryl hydrocarbon receptor	0.911	0.072	0.682	8.3e-18
UNIPROTKB|P35869	848	AHR "Aryl hydrocarbon receptor	0.911	0.073	0.682	1.1e-17

FB|FBgn0003513 ss "spineless" [Drosophila melanogaster (taxid:7227)]

 Score = 310 (114.2 bits), Expect = 2.0e-26, P = 2.0e-26
 Identities = 62/64 (96%), Positives = 63/64 (98%)

Query:     3 SLKPPPKDGVTKSNPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRTK 62
             SLKPPPKDGVTKSNPSKRHRERLNAELD LA+LLPFEQNILSKLDRLSILRLSVSYLRTK
Sbjct:    19 SLKPPPKDGVTKSNPSKRHRERLNAELDLLASLLPFEQNILSKLDRLSILRLSVSYLRTK 78

Query:    63 SYFQ 66
             SYFQ
Sbjct:    79 SYFQ 82

GO:0005634 "nucleus" evidence=ISS;IDA;NAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;NAS

GO:0003677 "DNA binding" evidence=ISS

GO:0006366 "transcription from RNA polymerase II promoter" evidence=NAS

GO:0007469 "antennal development" evidence=IEP

GO:0048800 "antennal morphogenesis" evidence=IMP

GO:0004871 "signal transducer activity" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0010092 "specification of organ identity" evidence=IMP

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IMP

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0036011 "imaginal disc-derived leg segmentation" evidence=IMP

GO:0003705 "RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity" evidence=IDA

GO:0048814 "regulation of dendrite morphogenesis" evidence=IMP

UNIPROTKB|F1SEI6 F1SEI6 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 229 (85.7 bits), Expect = 8.9e-19, P = 8.9e-19
 Identities = 43/65 (66%), Positives = 57/65 (87%)

Query:     3 SLKPPPKDGVTKSNPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRTK 62
             ++KP P +G+ KSNPSKRHR+RLN ELD LA+LLPF Q++++KLD+LS+LRLSVSYLR K
Sbjct:    22 TVKPIPAEGI-KSNPSKRHRDRLNTELDRLASLLPFPQDVINKLDKLSVLRLSVSYLRAK 80

Query:    63 SYFQE 67
             S+F +
Sbjct:    81 SFFDD 85

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

UNIPROTKB|E5RFG4 AHRR "Aryl hydrocarbon receptor repressor" [Homo sapiens (taxid:9606)]

 Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
 Identities = 45/62 (72%), Positives = 52/62 (83%)

Query:     5 KPPPKDGVTKSNPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRTKSY 64
             K  P  G  KSNPSKRHR+RLNAELD LA+LLPF  +I+SKLD+LS+LRLSVSYLR KS+
Sbjct:    20 KQRPAVGAEKSNPSKRHRDRLNAELDHLASLLPFPPDIISKLDKLSVLRLSVSYLRVKSF 79

Query:    65 FQ 66
             FQ
Sbjct:    80 FQ 81

GO:0004871 "signal transducer activity" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0033235 "positive regulation of protein sumoylation" evidence=IEA

UNIPROTKB|E5RGQ2 AHRR "Aryl hydrocarbon receptor repressor" [Homo sapiens (taxid:9606)]

 Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
 Identities = 45/62 (72%), Positives = 52/62 (83%)

Query:     5 KPPPKDGVTKSNPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRTKSY 64
             K  P  G  KSNPSKRHR+RLNAELD LA+LLPF  +I+SKLD+LS+LRLSVSYLR KS+
Sbjct:    20 KQRPAVGAEKSNPSKRHRDRLNAELDHLASLLPFPPDIISKLDKLSVLRLSVSYLRVKSF 79

Query:    65 FQ 66
             FQ
Sbjct:    80 FQ 81

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0033235 "positive regulation of protein sumoylation" evidence=IEA

UNIPROTKB|G3V143 AHRR "Aryl hydrocarbon receptor repressor" [Homo sapiens (taxid:9606)]

 Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
 Identities = 45/62 (72%), Positives = 52/62 (83%)

Query:     5 KPPPKDGVTKSNPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRTKSY 64
             K  P  G  KSNPSKRHR+RLNAELD LA+LLPF  +I+SKLD+LS+LRLSVSYLR KS+
Sbjct:    20 KQRPAVGAEKSNPSKRHRDRLNAELDHLASLLPFPPDIISKLDKLSVLRLSVSYLRVKSF 79

Query:    65 FQ 66
             FQ
Sbjct:    80 FQ 81

GO:0046983 "protein dimerization activity" evidence=IEA

UNIPROTKB|I3L5U3 I3L5U3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 227 (85.0 bits), Expect = 1.7e-18, P = 1.7e-18
 Identities = 43/63 (68%), Positives = 56/63 (88%)

Query:     3 SLKPPPKDGVTKSNPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRTK 62
             ++KP P +G+ KSNPSKRHR+RLN ELD LA+LLPF Q++++KLD+LS+LRLSVSYLR K
Sbjct:    22 TVKPIPAEGI-KSNPSKRHRDRLNTELDRLASLLPFPQDVINKLDKLSVLRLSVSYLRAK 80

Query:    63 SYF 65
             S+F
Sbjct:    81 SFF 83

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

UNIPROTKB|F1NLX8 AHR "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 233 (87.1 bits), Expect = 2.4e-18, P = 2.4e-18
 Identities = 45/62 (72%), Positives = 56/62 (90%)

Query:     4 LKPPPKDGVTKSNPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRTKS 63
             +KP P +GV KSNPSKRHR+RLNAELD LA+LLPF Q++++KLD+LS+LRLSVSYLR KS
Sbjct:     1 VKPSPAEGV-KSNPSKRHRDRLNAELDRLASLLPFPQDVIAKLDKLSVLRLSVSYLRAKS 59

Query:    64 YF 65
             +F
Sbjct:    60 FF 61

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0003705 "RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0004879 "ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006950 "response to stress" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0009410 "response to xenobiotic stimulus" evidence=IEA

GO:0030850 "prostate gland development" evidence=IEA

GO:0030888 "regulation of B cell proliferation" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0044212 "transcription regulatory region DNA binding" evidence=IEA

GO:0045899 "positive regulation of RNA polymerase II transcriptional preinitiation complex assembly" evidence=IEA

GO:0051879 "Hsp90 protein binding" evidence=IEA

UNIPROTKB|G3V6M2 Ahr "RCG61977, isoform CRA_b" [Rattus norvegicus (taxid:10116)]

 Score = 231 (86.4 bits), Expect = 4.0e-18, P = 4.0e-18
 Identities = 44/63 (69%), Positives = 56/63 (88%)

Query:     3 SLKPPPKDGVTKSNPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRTK 62
             ++KP P +G+ KSNPSKRHR+RLN ELD LA+LLPF Q+++SKLD+LS+LRLSVSYLR K
Sbjct:    21 TVKPVPAEGI-KSNPSKRHRDRLNTELDRLASLLPFPQDVISKLDKLSVLRLSVSYLRAK 79

Query:    63 SYF 65
             S+F
Sbjct:    80 SFF 82

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0003705 "RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0004879 "ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006950 "response to stress" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0009410 "response to xenobiotic stimulus" evidence=IEA

GO:0030850 "prostate gland development" evidence=IEA

GO:0030888 "regulation of B cell proliferation" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0044212 "transcription regulatory region DNA binding" evidence=IEA

GO:0045899 "positive regulation of RNA polymerase II transcriptional preinitiation complex assembly" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0051879 "Hsp90 protein binding" evidence=IEA

RGD|2074 Ahr "aryl hydrocarbon receptor" [Rattus norvegicus (taxid:10116)]

 Score = 228 (85.3 bits), Expect = 8.3e-18, P = 8.3e-18
 Identities = 43/63 (68%), Positives = 56/63 (88%)

Query:     3 SLKPPPKDGVTKSNPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRTK 62
             ++KP P +G+ KSNPSKRHR+RLN ELD LA+LLPF Q++++KLD+LS+LRLSVSYLR K
Sbjct:    21 TVKPVPAEGI-KSNPSKRHRDRLNTELDRLASLLPFPQDVINKLDKLSVLRLSVSYLRAK 79

Query:    63 SYF 65
             S+F
Sbjct:    80 SFF 82

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0000902 "cell morphogenesis" evidence=ISO

GO:0001541 "ovarian follicle development" evidence=IMP

GO:0001568 "blood vessel development" evidence=ISO

GO:0001569 "patterning of blood vessels" evidence=ISO

GO:0001782 "B cell homeostasis" evidence=ISO

GO:0001889 "liver development" evidence=ISO

GO:0001974 "blood vessel remodeling" evidence=ISO

GO:0002260 "lymphocyte homeostasis" evidence=ISO

GO:0002376 "immune system process" evidence=ISO

GO:0003085 "negative regulation of systemic arterial blood pressure" evidence=ISO

GO:0003214 "cardiac left ventricle morphogenesis" evidence=ISO

GO:0003243 "circumferential growth involved in left ventricle morphogenesis" evidence=ISO

GO:0003677 "DNA binding" evidence=ISO;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISO;TAS

GO:0003705 "RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity" evidence=ISO

GO:0004874 "aryl hydrocarbon receptor activity" evidence=IDA;TAS

GO:0004879 "ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity" evidence=ISO;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005829 "cytosol" evidence=ISO;IDA;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISO;IDA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0006366 "transcription from RNA polymerase II promoter" evidence=ISO;IDA

GO:0006915 "apoptotic process" evidence=ISO;TAS

GO:0006950 "response to stress" evidence=ISO;IDA

GO:0007049 "cell cycle" evidence=ISO;TAS

GO:0008015 "blood circulation" evidence=ISO

GO:0008134 "transcription factor binding" evidence=ISO

GO:0009410 "response to xenobiotic stimulus" evidence=ISO;IDA;TAS

GO:0009636 "response to toxic substance" evidence=ISO

GO:0010468 "regulation of gene expression" evidence=ISO

GO:0014070 "response to organic cyclic compound" evidence=IEP;IMP

GO:0030522 "intracellular receptor mediated signaling pathway" evidence=ISO;IDA;TAS

GO:0030850 "prostate gland development" evidence=ISO

GO:0030888 "regulation of B cell proliferation" evidence=ISO

GO:0032355 "response to estradiol stimulus" evidence=IEP

GO:0035162 "embryonic hemopoiesis" evidence=ISO

GO:0035166 "post-embryonic hemopoiesis" evidence=ISO

GO:0040010 "positive regulation of growth rate" evidence=ISO

GO:0043010 "camera-type eye development" evidence=ISO

GO:0043029 "T cell homeostasis" evidence=ISO

GO:0043565 "sequence-specific DNA binding" evidence=ISO

GO:0044212 "transcription regulatory region DNA binding" evidence=ISO

GO:0045793 "positive regulation of cell size" evidence=ISO

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISO

GO:0045899 "positive regulation of RNA polymerase II transcriptional preinitiation complex assembly" evidence=ISO

GO:0045906 "negative regulation of vasoconstriction" evidence=ISO

GO:0046982 "protein heterodimerization activity" evidence=ISO

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0048514 "blood vessel morphogenesis" evidence=ISO

GO:0048536 "spleen development" evidence=ISO

GO:0048608 "reproductive structure development" evidence=ISO

GO:0048732 "gland development" evidence=ISO

GO:0048745 "smooth muscle tissue development" evidence=ISO

GO:0050880 "regulation of blood vessel size" evidence=ISO

GO:0051879 "Hsp90 protein binding" evidence=ISO

GO:0060547 "negative regulation of necrotic cell death" evidence=ISO

GO:0060841 "venous blood vessel development" evidence=ISO

GO:0060993 "kidney morphogenesis" evidence=ISO

GO:0061009 "common bile duct development" evidence=ISO

GO:0071320 "cellular response to cAMP" evidence=ISO

GO:0071385 "cellular response to glucocorticoid stimulus" evidence=IEP

GO:0072102 "glomerulus morphogenesis" evidence=ISO

GO:0005730 "nucleolus" evidence=ISO

UNIPROTKB|P35869 AHR "Aryl hydrocarbon receptor" [Homo sapiens (taxid:9606)]

 Score = 227 (85.0 bits), Expect = 1.1e-17, P = 1.1e-17
 Identities = 43/63 (68%), Positives = 56/63 (88%)

Query:     3 SLKPPPKDGVTKSNPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRTK 62
             ++KP P +G+ KSNPSKRHR+RLN ELD LA+LLPF Q++++KLD+LS+LRLSVSYLR K
Sbjct:    22 TVKPIPAEGI-KSNPSKRHRDRLNTELDRLASLLPFPQDVINKLDKLSVLRLSVSYLRAK 80

Query:    63 SYF 65
             S+F
Sbjct:    81 SFF 83

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0003705 "RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0030850 "prostate gland development" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045899 "positive regulation of RNA polymerase II transcriptional preinitiation complex assembly" evidence=IEA

GO:0003677 "DNA binding" evidence=IDA;TAS

GO:0044212 "transcription regulatory region DNA binding" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0030888 "regulation of B cell proliferation" evidence=IDA

GO:0010468 "regulation of gene expression" evidence=IDA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0001568 "blood vessel development" evidence=NAS

GO:0046982 "protein heterodimerization activity" evidence=TAS

GO:0046983 "protein dimerization activity" evidence=TAS

GO:0034752 "cytosolic aryl hydrocarbon receptor complex" evidence=TAS

GO:0005667 "transcription factor complex" evidence=TAS

GO:0006805 "xenobiotic metabolic process" evidence=TAS

GO:0004879 "ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity" evidence=IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IDA

GO:0009410 "response to xenobiotic stimulus" evidence=IDA

GO:0007049 "cell cycle" evidence=TAS

GO:0006915 "apoptotic process" evidence=TAS

GO:0006366 "transcription from RNA polymerase II promoter" evidence=IDA

GO:0006950 "response to stress" evidence=IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0008134 "transcription factor binding" evidence=IPI

GO:0051879 "Hsp90 protein binding" evidence=IDA

GO:0030522 "intracellular receptor mediated signaling pathway" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P35869	AHR_HUMAN	No assigned EC number	0.6825	0.9117	0.0731	yes	N/A
P30561	AHR_MOUSE	No assigned EC number	0.6825	0.9117	0.0731	yes	N/A
O44712	AHR_CAEEL	No assigned EC number	0.5714	0.9117	0.1029	yes	N/A
O02747	AHR_RABIT	No assigned EC number	0.6825	0.9117	0.0731	yes	N/A
P41738	AHR_RAT	No assigned EC number	0.6825	0.9117	0.0726	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	68
smart00353	53	smart00353, HLH, helix loop helix domain	1e-05
cd00083	60	cd00083, HLH, Helix-loop-helix domain, found in sp	1e-05
pfam00010	52	pfam00010, HLH, Helix-loop-helix DNA-binding domai	8e-04

>gnl|CDD|197674 smart00353, HLH, helix loop helix domain

 Score = 38.0 bits (89), Expect = 1e-05
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)

Query: 19 KRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLR 60
          +R R ++N   D L +LLP       KL +  ILRL++ Y++
Sbjct: 5  RRRRRKINEAFDELRSLLPTLPKN-KKLSKAEILRLAIEYIK 45

Length = 53

>gnl|CDD|238036 cd00083, HLH, Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long

 Score = 38.0 bits (89), Expect = 1e-05
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)

Query: 19 KRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLR 60
          +R RER+N   D L +LLP       KL +  ILR +V Y++
Sbjct: 13 RRRRERINDAFDELRSLLPTLPPS-KKLSKAEILRKAVDYIK 53

A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and have a PAS domain which allows the dimerization between PAS proteins, the binding of small molecules (e.g., dioxin), and interactions with non-PAS proteins. Length = 60

>gnl|CDD|215654 pfam00010, HLH, Helix-loop-helix DNA-binding domain

 Score = 33.2 bits (77), Expect = 8e-04
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 2/42 (4%)

Query: 19 KRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLR 60
          +R R+R+N   + L  LLP   N   KL +  ILRL++ Y++
Sbjct: 10 RRRRDRINDAFEELRELLPTPPN--KKLSKAEILRLAIEYIK 49

Length = 52

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	68
KOG3558|consensus	768		99.74
KOG3560|consensus	712		99.72
KOG3559|consensus	598		99.47
PF00010	55	HLH: Helix-loop-helix DNA-binding domain only nucl	99.34
KOG3561|consensus	803		99.32
cd00083	60	HLH Helix-loop-helix domain, found in specific DNA	99.31
smart00353	53	HLH helix loop helix domain.	99.3
KOG4304|consensus	250		99.2
KOG1318|consensus	411		98.31
KOG1319|consensus	229		97.4
KOG4029|consensus	228		97.37
KOG2483|consensus	232		96.13
KOG0561|consensus	373		96.0
KOG2588|consensus	953		95.93
KOG3960|consensus	284		95.81
PLN03217	93	transcription factor ATBS1; Provisional	95.32

>KOG3558|consensus

Probab=99.74  E-value=1.2e-18  Score=140.49  Aligned_cols=54  Identities=37%  Similarity=0.624  Sum_probs=52.7

Q ss_pred             CCchhHHHhHHHhHHHHHHHHhcCCCCCccccchHHHHHHHHHHHHHHhhhhhh
Q psy8266          13 TKSNPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRTKSYFQ   66 (68)
Q Consensus        13 ~~~~aeK~RRdk~N~~~~~L~~lLP~~~~~~~kLDKaSILrlti~yLk~~~~~~   66 (68)
                      +||+|+|+||.|||++|+||+.+||++++++++||||||||+||+|||+++|+.
T Consensus        49 kSRdAARsRRsKEn~~FyeLa~~lPlp~aisshLDkaSimRLtISyLRlrk~a~  102 (768)
T KOG3558|consen   49 KSRDAARSRRSKENEEFYELAKLLPLPAAISSHLDKASIMRLTISYLRLRKFAG  102 (768)
T ss_pred             hhhhhhhhhcccchHHHHHHHHhCCCcchhhhhhhhHHHHHHHHHHHHHHHHhh
Confidence            799999999999999999999999999999999999999999999999999975

>KOG3560|consensus

Probab=99.72  E-value=4.6e-18  Score=135.32  Aligned_cols=63  Identities=76%  Similarity=1.177  Sum_probs=58.7

Q ss_pred             CCCCCCCCCCCCchhHHHhHHHhHHHHHHHHhcCCCCCccccchHHHHHHHHHHHHHHhhhhhh
Q psy8266           3 SLKPPPKDGVTKSNPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRTKSYFQ   66 (68)
Q Consensus         3 ~~k~~p~~~~~~~~aeK~RRdk~N~~~~~L~~lLP~~~~~~~kLDKaSILrlti~yLk~~~~~~   66 (68)
                      +.+|+|+. +.++|.+||+|||+|.+++.|++|||++.++++||||+|||||+|+|||++.||+
T Consensus        19 k~rpp~~a-~tkSNPSKRHRdRLNaELD~lAsLLPfpqdiisKLDkLSVLRLSVSyLr~KSfFq   81 (712)
T KOG3560|consen   19 KQRPPPKA-LTKSNPSKRHRDRLNAELDHLASLLPFPQDIISKLDKLSVLRLSVSYLRVKSFFQ   81 (712)
T ss_pred             ccCCCccc-cccCCcchhHHHHhhhHHHHHHHhcCCCHHHHhhhhhhhhhhhhHHHHHHHHHHH
Confidence            45666666 6799999999999999999999999999999999999999999999999999997

>KOG3559|consensus

Probab=99.47  E-value=2.7e-14  Score=111.79  Aligned_cols=54  Identities=41%  Similarity=0.661  Sum_probs=51.9

Q ss_pred             CCchhHHHhHHHhHHHHHHHHhcCCCCCccccchHHHHHHHHHHHHHHhhhhhh
Q psy8266          13 TKSNPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRTKSYFQ   66 (68)
Q Consensus        13 ~~~~aeK~RRdk~N~~~~~L~~lLP~~~~~~~kLDKaSILrlti~yLk~~~~~~   66 (68)
                      ++.++++.||+++|.+|.+|+.+||++.++.++|||+||+|||.+|||++++|.
T Consensus         4 kSKnaA~tRRekEN~EF~eLAklLPLa~AItsQlDKasiiRLtTsYlKmr~vFP   57 (598)
T KOG3559|consen    4 KSKNAARTRREKENYEFYELAKLLPLASAITSQLDKASIIRLTTSYLKMRNVFP   57 (598)
T ss_pred             cchhHHHHHHHhhcchHHHHHhhccchhhhhhccchhhhhhHHHHHHHHHHhcc
Confidence            577899999999999999999999999999999999999999999999999994

>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt)

Probab=99.34  E-value=1.5e-12  Score=73.71  Aligned_cols=48  Identities=31%  Similarity=0.547  Sum_probs=42.6

Q ss_pred             CchhHHHhHHHhHHHHHHHHhcCCCC-CccccchHHHHHHHHHHHHHHh
Q psy8266          14 KSNPSKRHRERLNAELDTLANLLPFE-QNILSKLDRLSILRLSVSYLRT   61 (68)
Q Consensus        14 ~~~aeK~RRdk~N~~~~~L~~lLP~~-~~~~~kLDKaSILrlti~yLk~   61 (68)
                      +...||+||+++|+.|.+|..+||.+ .....++||++||+.||+|++.
T Consensus         5 h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~   53 (55)
T PF00010_consen    5 HNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQ   53 (55)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHH
Confidence            45689999999999999999999974 2456889999999999999975

; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....

>KOG3561|consensus

Probab=99.32  E-value=2e-12  Score=105.72  Aligned_cols=53  Identities=28%  Similarity=0.501  Sum_probs=49.4

Q ss_pred             CCchhHHHhHHHhHHHHHHHHhcCCCCCccccchHHHHHHHHHHHHHHhhhhh
Q psy8266          13 TKSNPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRTKSYF   65 (68)
Q Consensus        13 ~~~~aeK~RRdk~N~~~~~L~~lLP~~~~~~~kLDKaSILrlti~yLk~~~~~   65 (68)
                      .++.+|||||||+|..|+||+.|||-+.+..+|+||..|||+||+|||.++.+
T Consensus        23 ~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~   75 (803)
T KOG3561|consen   23 NRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ   75 (803)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence            46779999999999999999999998888889999999999999999998765

>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long

Probab=99.31  E-value=5.5e-12  Score=71.07  Aligned_cols=50  Identities=34%  Similarity=0.536  Sum_probs=44.4

Q ss_pred             CCchhHHHhHHHhHHHHHHHHhcCCCCCccccchHHHHHHHHHHHHHHhhh
Q psy8266          13 TKSNPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRTKS   63 (68)
Q Consensus        13 ~~~~aeK~RRdk~N~~~~~L~~lLP~~~~~~~kLDKaSILrlti~yLk~~~   63 (68)
                      .+..+||.||+++|+.|.+|..+||... ...++||++||..||+|++...
T Consensus         7 ~~~~~Er~RR~~~n~~~~~L~~llp~~~-~~~k~~k~~iL~~a~~yI~~L~   56 (60)
T cd00083           7 AHNLRERRRRERINDAFDELRSLLPTLP-PSKKLSKAEILRKAVDYIKSLQ   56 (60)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHCCCCC-CCCCCCHHHHHHHHHHHHHHHH
Confidence            4667999999999999999999999644 4689999999999999998754

A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and

>smart00353 HLH helix loop helix domain

Probab=99.30  E-value=7.5e-12  Score=69.61  Aligned_cols=46  Identities=33%  Similarity=0.582  Sum_probs=41.3

Q ss_pred             hhHHHhHHHhHHHHHHHHhcCCCCCccccchHHHHHHHHHHHHHHhh
Q psy8266          16 NPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRTK   62 (68)
Q Consensus        16 ~aeK~RRdk~N~~~~~L~~lLP~~~~~~~kLDKaSILrlti~yLk~~   62 (68)
                      .+||+||+++|+.|.+|+.+||... ...++||++||..||+|++..
T Consensus         2 ~~Er~RR~~~n~~~~~L~~lip~~~-~~~k~~k~~iL~~ai~yi~~L   47 (53)
T smart00353        2 ARERRRRRKINEAFDELRSLLPTLP-NNKKLSKAEILRLAIEYIKSL   47 (53)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCC-CCCCCCHHHHHHHHHHHHHHH
Confidence            4799999999999999999999544 678999999999999999753

>KOG4304|consensus

Probab=99.20  E-value=1.3e-11  Score=89.48  Aligned_cols=51  Identities=37%  Similarity=0.501  Sum_probs=43.6

Q ss_pred             CchhHHHhHHHhHHHHHHHHhcCCC--CC--ccccchHHHHHHHHHHHHHHhhhh
Q psy8266          14 KSNPSKRHRERLNAELDTLANLLPF--EQ--NILSKLDRLSILRLSVSYLRTKSY   64 (68)
Q Consensus        14 ~~~aeK~RRdk~N~~~~~L~~lLP~--~~--~~~~kLDKaSILrlti~yLk~~~~   64 (68)
                      +.-.||+||||||+.+++|+.|||-  ..  ...+|||||.||++||.||+..+-
T Consensus        36 Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~   90 (250)
T KOG4304|consen   36 KPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQR   90 (250)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhc
Confidence            4458999999999999999999992  22  355899999999999999998653

>KOG1318|consensus

Probab=98.31  E-value=6.7e-07  Score=69.31  Aligned_cols=48  Identities=27%  Similarity=0.450  Sum_probs=43.9

Q ss_pred             CchhHHHhHHHhHHHHHHHHhcCCCCCccccchHHHHHHHHHHHHHHh
Q psy8266          14 KSNPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRT   61 (68)
Q Consensus        14 ~~~aeK~RRdk~N~~~~~L~~lLP~~~~~~~kLDKaSILrlti~yLk~   61 (68)
                      |-..|||||++||+-|.+|..|||-+.....++.|..||.-+++|++.
T Consensus       237 HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~  284 (411)
T KOG1318|consen  237 HNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRE  284 (411)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHH
Confidence            345899999999999999999999887777899999999999999985

>KOG1319|consensus

Probab=97.40  E-value=0.0003  Score=51.02  Aligned_cols=48  Identities=23%  Similarity=0.430  Sum_probs=41.2

Q ss_pred             CchhHHHhHHHhHHHHHHHHhcCCCCCccc---cchHHHHHHHHHHHHHHh
Q psy8266          14 KSNPSKRHRERLNAELDTLANLLPFEQNIL---SKLDRLSILRLSVSYLRT   61 (68)
Q Consensus        14 ~~~aeK~RRdk~N~~~~~L~~lLP~~~~~~---~kLDKaSILrlti~yLk~   61 (68)
                      +..+|++|||-+|.-.+.|..|+|.+....   -||.||-||.-||+|+..
T Consensus        66 HtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~  116 (229)
T KOG1319|consen   66 HTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQF  116 (229)
T ss_pred             HHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHH
Confidence            445889999999999999999999766433   399999999999999754

>KOG4029|consensus

Probab=97.37  E-value=0.00015  Score=51.01  Aligned_cols=49  Identities=29%  Similarity=0.460  Sum_probs=41.9

Q ss_pred             hHHHhHHHhHHHHHHHHhcCCCCCccccchHHHHHHHHHHHHHHhhhhh
Q psy8266          17 PSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRTKSYF   65 (68)
Q Consensus        17 aeK~RRdk~N~~~~~L~~lLP~~~~~~~kLDKaSILrlti~yLk~~~~~   65 (68)
                      .||.|=...|.-|.+|+.+||......++|-|.++||+||+|++....+
T Consensus       116 RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~l  164 (228)
T KOG4029|consen  116 RERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKL  164 (228)
T ss_pred             hhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHH
Confidence            5777778999999999999996554489999999999999999986543

>KOG2483|consensus

Probab=96.13  E-value=0.016  Score=42.13  Aligned_cols=47  Identities=21%  Similarity=0.334  Sum_probs=37.5

Q ss_pred             CchhHHHhHHHhHHHHHHHHhcCCCCCccccchHHHHHHHHHHHHHHh
Q psy8266          14 KSNPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRT   61 (68)
Q Consensus        14 ~~~aeK~RRdk~N~~~~~L~~lLP~~~~~~~kLDKaSILrlti~yLk~   61 (68)
                      +-.-||+||+.+.+.|+.|+.+||.-.+..++- -++||.-|..|+..
T Consensus        63 HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t-~lsiL~kA~~~i~~  109 (232)
T KOG2483|consen   63 HNALEKRRRAHLKDCFESLKDSVPLLNGETRST-TLSILDKALEHIQS  109 (232)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhh-hhHhhhhHHHHHHH
Confidence            344799999999999999999999755443332 78899888888764

>KOG0561|consensus

Probab=96.00  E-value=0.013  Score=45.20  Aligned_cols=42  Identities=29%  Similarity=0.489  Sum_probs=34.2

Q ss_pred             HHHhHHHhHHHHHHHHhcCCCCCccccchHHHHHHHHHHHHHHh
Q psy8266          18 SKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRT   61 (68)
Q Consensus        18 eK~RRdk~N~~~~~L~~lLP~~~~~~~kLDKaSILrlti~yLk~   61 (68)
                      ||||=.-+|.=|..|+.|||.  .-..||.||.||+-|.+|+--
T Consensus        68 ERRRMQSINAGFqsLr~LlPr--~eGEKLSKAAILQQTa~yI~~  109 (373)
T KOG0561|consen   68 ERRRMQSINAGFQSLRALLPR--KEGEKLSKAAILQQTADYIHQ  109 (373)
T ss_pred             HHHHHHhhhHHHHHHHHhcCc--ccchhhHHHHHHHHHHHHHHH
Confidence            344446789999999999994  345799999999999999753

>KOG2588|consensus

Probab=95.93  E-value=0.0079  Score=51.05  Aligned_cols=46  Identities=26%  Similarity=0.490  Sum_probs=41.3

Q ss_pred             CCchhHHHhHHHhHHHHHHHHhcCCCCCccccchHHHHHHHHHHHHHHh
Q psy8266          13 TKSNPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRT   61 (68)
Q Consensus        13 ~~~~aeK~RRdk~N~~~~~L~~lLP~~~~~~~kLDKaSILrlti~yLk~   61 (68)
                      .|--.|||.|.-+|+.|.+|++++|   ....++-|.++||-||+|++-
T Consensus       279 AHN~IEKRYRsSINDKI~eLk~lV~---g~~aKl~kSavLr~ai~~i~d  324 (953)
T KOG2588|consen  279 AHNIIEKRYRSSINDKIIELKDLVP---GTEAKLNKSAVLRKAIDYIED  324 (953)
T ss_pred             hhhHHHHHhhcchhHHHHHHHHhcC---ccHhhhhhhhhHHHHHHHHHH
Confidence            3455899999999999999999999   466899999999999999875

>KOG3960|consensus

Probab=95.81  E-value=0.021  Score=42.89  Aligned_cols=43  Identities=23%  Similarity=0.445  Sum_probs=35.1

Q ss_pred             hHHHhHHHhHHHHHHHHhcCCCCCccccchHHHHHHHHHHHHHHh
Q psy8266          17 PSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRT   61 (68)
Q Consensus        17 aeK~RRdk~N~~~~~L~~lLP~~~~~~~kLDKaSILrlti~yLk~   61 (68)
                      -||||=.|.||.|+.|++---  .+...+|=|..|||-||.|+.-
T Consensus       125 RERRRLkKVNEAFE~LKRrT~--~NPNQRLPKVEILRsAI~YIE~  167 (284)
T KOG3960|consen  125 RERRRLKKVNEAFETLKRRTS--SNPNQRLPKVEILRSAIRYIER  167 (284)
T ss_pred             HHHHHHHHHHHHHHHHHhhcC--CCccccccHHHHHHHHHHHHHH
Confidence            577777999999999997542  1335799999999999999864

>PLN03217 transcription factor ATBS1; Provisional

Probab=95.32  E-value=0.026  Score=36.37  Aligned_cols=41  Identities=22%  Similarity=0.378  Sum_probs=33.3

Q ss_pred             hHHHhHHHHHHHHhcCCCCCc--cccchHHHHHHHHHHHHHHh
Q psy8266          21 HRERLNAELDTLANLLPFEQN--ILSKLDRLSILRLSVSYLRT   61 (68)
Q Consensus        21 RRdk~N~~~~~L~~lLP~~~~--~~~kLDKaSILrlti~yLk~   61 (68)
                      =-|++|+.+..|..+||-...  ...+..-+-||+.|++|+|-
T Consensus        18 sddqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrs   60 (93)
T PLN03217         18 SEDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRN   60 (93)
T ss_pred             CHHHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHH
Confidence            359999999999999994332  33577778899999999985

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	68
4f3l_B	387	Crystal Structure Of The Heterodimeric Clock:bmal1		1e-04
4h10_A	73	Intermolecular Recognition Revealed By The Complex		1e-04

>pdb|4F3L|B Chain B, Crystal Structure Of The Heterodimeric Clock:bmal1 Transcriptional Activator Complex Length = 387

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 34/47 (72%)
Query: 15 SNPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRT 61
          S   KR R+++N+ +D LA+L+P    +  KLD+L++LR++V +++T
Sbjct: 18 SQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKT 64

>pdb|4H10|A Chain A, Intermolecular Recognition Revealed By The Complex Structure Of Human Clock-bmal1 Basic Helix-loop-helix Domains With E-box Dna Length = 73

Iteration: 1
 Score = 41.2 bits (95), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 34/47 (72%)
Query: 15 SNPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRT 61
          S   KR R+++N+ +D LA+L+P    +  KLD+L++LR++V +++T
Sbjct: 14 SQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKT 60
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	68
4f3l_B	387	BMAL1B; BHLH, PAS, circadian rhythm proteins, tran	5e-21
4f3l_A	361	Mclock, circadian locomoter output cycles protein	4e-20

>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus} Length = 387

 Score = 82.7 bits (204), Expect = 5e-21
 Identities = 18/54 (33%), Positives = 34/54 (62%)

Query: 14 KSNPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRTKSYFQE 67
           S   KR R+++N+ +D LA+L+P    +  KLD+L++LR++V +++T      
Sbjct: 17 HSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGATN 70

>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus} Length = 361

 Score = 80.4 bits (198), Expect = 4e-20
 Identities = 13/62 (20%), Positives = 29/62 (46%), Gaps = 3/62 (4%)

Query: 5  KPPPKDGVTKSNPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRTKSY 64
                 V+++   K+ R++ N  +  L ++LP       K+D+ ++L+ S+ +LR    
Sbjct: 7  DKDKAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNA---RKMDKSTVLQKSIDFLRKHKE 63

Query: 65 FQ 66
            
Sbjct: 64 TT 65

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	68
4h10_A	73	ARYL hydrocarbon receptor nuclear translocator-LI	99.66
4f3l_A	361	Mclock, circadian locomoter output cycles protein	99.56
4f3l_B	387	BMAL1B; BHLH, PAS, circadian rhythm proteins, tran	99.5
4h10_B	71	Circadian locomoter output cycles protein kaput; B	99.49
1a0a_A	63	BHLH, protein (phosphate system positive regulator	99.32
1an4_A	65	Protein (upstream stimulatory factor); protein-DNA	99.3
1am9_A	82	Srebp-1A, protein (sterol regulatory element bindi	99.23
4ati_A	118	MITF, microphthalmia-associated transcription fact	99.23
1nkp_B	83	MAX protein, MYC proto-oncogene protein; transcrip	99.1
1hlo_A	80	Protein (transcription factor MAX); transcriptiona	99.07
1nkp_A	88	C-MYC, MYC proto-oncogene protein; transcription,	98.93
1mdy_A	68	Protein (MYOD BHLH domain); protein-DNA complex, t	98.82
2ql2_B	60	Neurod1, neurogenic differentiation factor 1; basi	98.74
3u5v_A	76	Protein MAX, transcription factor E2-alpha chimer;	98.73
1nlw_A	80	MAD protein, MAX dimerizer; transcription factor,	98.71
2lfh_A	68	DNA-binding protein inhibitor ID-3; structural gen	98.61
4ath_A	83	MITF, microphthalmia-associated transcription fact	98.14
4aya_A	97	DNA-binding protein inhibitor ID-2; cell cycle; 2.	97.86

>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}

Probab=99.66  E-value=1.7e-17  Score=100.58  Aligned_cols=53  Identities=34%  Similarity=0.510  Sum_probs=47.4

Q ss_pred             CchhHHHhHHHhHHHHHHHHhcCCCCCccccchHHHHHHHHHHHHHHhhhhhh
Q psy8266          14 KSNPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRTKSYFQ   66 (68)
Q Consensus        14 ~~~aeK~RRdk~N~~~~~L~~lLP~~~~~~~kLDKaSILrlti~yLk~~~~~~   66 (68)
                      +..+||+||+++|+.|.+|+.|||.+.+..+++||++||++||+||+....|.
T Consensus        13 H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~~~   65 (73)
T 4h10_A           13 HSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGAW   65 (73)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSCC-
T ss_pred             cchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhcCc
Confidence            45689999999999999999999976666789999999999999999987764

>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}

Probab=99.56  E-value=2.5e-15  Score=107.68  Aligned_cols=53  Identities=25%  Similarity=0.513  Sum_probs=44.3

Q ss_pred             CCCCchhHHHhHHHhHHHHHHHHhcCCCCCccccchHHHHHHHHHHHHHHhhhhhh
Q psy8266          11 GVTKSNPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRTKSYFQ   66 (68)
Q Consensus        11 ~~~~~~aeK~RRdk~N~~~~~L~~lLP~~~~~~~kLDKaSILrlti~yLk~~~~~~   66 (68)
                      +..+..+||+|||++|+.|.+|+.|||   +..+||||++||++||+|||.++.+.
T Consensus        13 ~~~~~~~e~~rr~~~n~~~~~l~~~~p---~~~~~~dk~~il~~~~~~~~~~~~~~   65 (361)
T 4f3l_A           13 RVSRNKSEKKRRDQFNVLIKELGSMLP---GNARKMDKSTVLQKSIDFLRKHKETT   65 (361)
T ss_dssp             ------CHHHHHHHHHHHHHHHHHTCC---SSSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHhCC---CCCCCcCHHHHHHHHHHHHHHHHhhc
Confidence            334667999999999999999999999   46789999999999999999988774

>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}

Probab=99.50  E-value=4e-15  Score=108.07  Aligned_cols=50  Identities=36%  Similarity=0.600  Sum_probs=46.1

Q ss_pred             CchhHHHhHHHhHHHHHHHHhcCCCCCccccchHHHHHHHHHHHHHHhhh
Q psy8266          14 KSNPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRTKS   63 (68)
Q Consensus        14 ~~~aeK~RRdk~N~~~~~L~~lLP~~~~~~~kLDKaSILrlti~yLk~~~   63 (68)
                      ++.+||+|||++|+.|.+|+.|||.+.+..+||||++||++||+|||..+
T Consensus        17 ~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~   66 (387)
T 4f3l_B           17 HSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLR   66 (387)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHH
T ss_pred             ccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhh
Confidence            45689999999999999999999988888899999999999999999754

>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}

Probab=99.49  E-value=3.2e-14  Score=86.13  Aligned_cols=47  Identities=26%  Similarity=0.585  Sum_probs=42.0

Q ss_pred             CchhHHHhHHHhHHHHHHHHhcCCCCCccccchHHHHHHHHHHHHHHhhh
Q psy8266          14 KSNPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRTKS   63 (68)
Q Consensus        14 ~~~aeK~RRdk~N~~~~~L~~lLP~~~~~~~kLDKaSILrlti~yLk~~~   63 (68)
                      +..+||+||+++|+.|.+|+.|||   +..+++||++||+.||+||+..+
T Consensus        12 Hn~iErrRRd~IN~~i~eL~~LvP---~~~~K~dK~sIL~~aI~yik~Lq   58 (71)
T 4h10_B           12 RNKSEKKRRDQFNVLIKELGSMLP---GNARKMDKSTVLQKSIDFLRKHK   58 (71)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTSS---SCCSCCCHHHHHHHHHHHHHHHH
T ss_pred             hhHHHhhHHHHHHHHHHHHHHhCC---CCCCCCcHHHHHHHHHHHHHHHH
Confidence            346899999999999999999999   34579999999999999999754

>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1

Probab=99.32  E-value=1.3e-12  Score=76.84  Aligned_cols=52  Identities=23%  Similarity=0.399  Sum_probs=43.7

Q ss_pred             CCCCchhHHHhHHHhHHHHHHHHhcCCCCC---ccccchHHHHHHHHHHHHHHhh
Q psy8266          11 GVTKSNPSKRHRERLNAELDTLANLLPFEQ---NILSKLDRLSILRLSVSYLRTK   62 (68)
Q Consensus        11 ~~~~~~aeK~RRdk~N~~~~~L~~lLP~~~---~~~~kLDKaSILrlti~yLk~~   62 (68)
                      +..+..+||+||+++|..|.+|..|||-..   ...++++||+||.+||.|++..
T Consensus         3 r~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~L   57 (63)
T 1a0a_A            3 RESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHL   57 (63)
T ss_dssp             TTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHH
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHH
Confidence            345677999999999999999999999322   2257999999999999999864

>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1

Probab=99.30  E-value=5.4e-13  Score=77.62  Aligned_cols=52  Identities=17%  Similarity=0.276  Sum_probs=44.2

Q ss_pred             CCCCchhHHHhHHHhHHHHHHHHhcCCCCCcc--ccchHHHHHHHHHHHHHHhh
Q psy8266          11 GVTKSNPSKRHRERLNAELDTLANLLPFEQNI--LSKLDRLSILRLSVSYLRTK   62 (68)
Q Consensus        11 ~~~~~~aeK~RRdk~N~~~~~L~~lLP~~~~~--~~kLDKaSILrlti~yLk~~   62 (68)
                      ...+..+||+||+++|+.|.+|..+||-....  ..++||++||..||+|++..
T Consensus         6 r~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~L   59 (65)
T 1an4_A            6 RAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQEL   59 (65)
T ss_dssp             CCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHH
T ss_pred             HHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHH
Confidence            44577899999999999999999999954432  24899999999999999864

>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C

Probab=99.23  E-value=7.6e-12  Score=76.21  Aligned_cols=45  Identities=27%  Similarity=0.420  Sum_probs=40.7

Q ss_pred             CchhHHHhHHHhHHHHHHHHhcCCCCCccccchHHHHHHHHHHHHHHh
Q psy8266          14 KSNPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRT   61 (68)
Q Consensus        14 ~~~aeK~RRdk~N~~~~~L~~lLP~~~~~~~kLDKaSILrlti~yLk~   61 (68)
                      +..+||+||+++|+.|.+|..+||-   ...++||++||..||.|++.
T Consensus        10 H~~~ErrRR~~in~~f~~L~~lvP~---~~~k~~Ka~IL~~Ai~YI~~   54 (82)
T 1am9_A           10 HNAIEKRYRSSINDKIIELKDLVVG---TEAKLNKSAVLRKAIDYIRF   54 (82)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTC---SSCCCCHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHhccC---CCCCCCHHHHHHHHHHHHHH
Confidence            4568999999999999999999993   34899999999999999986

>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A

Probab=99.23  E-value=9.4e-12  Score=80.42  Aligned_cols=50  Identities=24%  Similarity=0.399  Sum_probs=41.5

Q ss_pred             CCchhHHHhHHHhHHHHHHHHhcCCCCCccccchHHHHHHHHHHHHHHhh
Q psy8266          13 TKSNPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRTK   62 (68)
Q Consensus        13 ~~~~aeK~RRdk~N~~~~~L~~lLP~~~~~~~kLDKaSILrlti~yLk~~   62 (68)
                      .+..+||+||+++|+.|.+|..+||-......++||++||..||.|++..
T Consensus        30 ~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~L   79 (118)
T 4ati_A           30 NHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKL   79 (118)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHH
Confidence            35679999999999999999999996655567999999999999999863

>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B

Probab=99.10  E-value=8.7e-11  Score=70.98  Aligned_cols=47  Identities=19%  Similarity=0.343  Sum_probs=40.9

Q ss_pred             CchhHHHhHHHhHHHHHHHHhcCCCCCccccchHHHHHHHHHHHHHHhh
Q psy8266          14 KSNPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRTK   62 (68)
Q Consensus        14 ~~~aeK~RRdk~N~~~~~L~~lLP~~~~~~~kLDKaSILrlti~yLk~~   62 (68)
                      +...||+||+.+|+.|.+|..+||...  ..++||++||+.||.|++.-
T Consensus         6 hn~~Er~RR~~in~~f~~Lr~lvP~~~--~~k~sK~~iL~~Ai~YI~~L   52 (83)
T 1nkp_B            6 HNALERKRRDHIKDSFHSLRDSVPSLQ--GEKASRAQILDKATEYIQYM   52 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTSGGGT--TSCCCHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHCCCCC--CCCCCHHHHHHHHHHHHHHH
Confidence            345899999999999999999999432  47899999999999999863

>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1

Probab=99.07  E-value=1.2e-10  Score=70.09  Aligned_cols=47  Identities=19%  Similarity=0.343  Sum_probs=40.8

Q ss_pred             CchhHHHhHHHhHHHHHHHHhcCCCCCccccchHHHHHHHHHHHHHHhh
Q psy8266          14 KSNPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRTK   62 (68)
Q Consensus        14 ~~~aeK~RRdk~N~~~~~L~~lLP~~~~~~~kLDKaSILrlti~yLk~~   62 (68)
                      +...||+||+.+|+.|.+|+.+||...  ..+++|++||+.||.|++..
T Consensus        16 hn~~Er~RR~~in~~f~~Lr~lvP~~~--~~k~sK~~iL~~Ai~YI~~L   62 (80)
T 1hlo_A           16 HNALERKRRDHIKDSFHSLRDSVPSLQ--GEKASRAQILDKATEYIQYM   62 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSGGGT--TSCCCHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHCcCCC--CCCccHHHHHHHHHHHHHHH
Confidence            345899999999999999999999433  36899999999999999863

>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1

Probab=98.93  E-value=1.1e-09  Score=67.66  Aligned_cols=48  Identities=17%  Similarity=0.266  Sum_probs=41.1

Q ss_pred             CchhHHHhHHHhHHHHHHHHhcCCCCCccccchHHHHHHHHHHHHHHhh
Q psy8266          14 KSNPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRTK   62 (68)
Q Consensus        14 ~~~aeK~RRdk~N~~~~~L~~lLP~~~~~~~kLDKaSILrlti~yLk~~   62 (68)
                      +-.+||+||+.+|+.|..|..+||... ...++||++||+.||.|++.-
T Consensus        10 Hn~~ER~RR~~ln~~f~~Lr~~vP~~~-~~~K~sK~~iL~~A~~YI~~L   57 (88)
T 1nkp_A           10 HNVLERQRRNELKRSFFALRDQIPELE-NNEKAPKVVILKKATAYILSV   57 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCGGGT-TCTTCCHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHCCCCC-CCCCCCHHHHHHHHHHHHHHH
Confidence            345899999999999999999999422 246999999999999999863

>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*

Probab=98.82  E-value=7e-09  Score=61.78  Aligned_cols=47  Identities=19%  Similarity=0.345  Sum_probs=40.9

Q ss_pred             chhHHHhHHHhHHHHHHHHhcCCCCCccccchHHHHHHHHHHHHHHhhh
Q psy8266          15 SNPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRTKS   63 (68)
Q Consensus        15 ~~aeK~RRdk~N~~~~~L~~lLP~~~~~~~kLDKaSILrlti~yLk~~~   63 (68)
                      ...||+|+..+|+.|..|..+||...  ..+|.|++||++||+|+..-.
T Consensus        17 N~rER~R~~~iN~af~~LR~~iP~~~--~~KlSKi~tLr~Ai~YI~~L~   63 (68)
T 1mdy_A           17 TMRERRRLSKVNEAFETLKRSTSSNP--NQRLPKVEILRNAIRYIEGLQ   63 (68)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSCSCT--TSCCCHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHhcCCCC--CCCCCHHHHHHHHHHHHHHHH
Confidence            34799999999999999999999543  579999999999999987643

>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}

Probab=98.74  E-value=2.3e-08  Score=58.16  Aligned_cols=47  Identities=30%  Similarity=0.456  Sum_probs=40.9

Q ss_pred             hhHHHhHHHhHHHHHHHHhcCCCCCccccchHHHHHHHHHHHHHHhhh
Q psy8266          16 NPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRTKS   63 (68)
Q Consensus        16 ~aeK~RRdk~N~~~~~L~~lLP~~~~~~~kLDKaSILrlti~yLk~~~   63 (68)
                      .-||+|+..+|+.|+.|..+||... ...+|.|+.||++|++|+..-+
T Consensus         8 ~rER~R~~~iN~af~~LR~~lP~~~-~~~klSKi~tLr~Ai~YI~~L~   54 (60)
T 2ql2_B            8 ARERNRMHGLNAALDNLRKVVPCYS-KTQKLSKIETLRLAKNYIWALS   54 (60)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSSSCC-SSSCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHccCCC-CcCcCCHHHHHHHHHHHHHHHH
Confidence            4689999999999999999999533 4589999999999999998643

>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*

Probab=98.73  E-value=4.3e-09  Score=63.79  Aligned_cols=50  Identities=14%  Similarity=0.221  Sum_probs=39.8

Q ss_pred             CCCchhHHHhHHHhHHHHHHHHhcCCCCCccccchHHHHHHHHHHHHHHh
Q psy8266          12 VTKSNPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRT   61 (68)
Q Consensus        12 ~~~~~aeK~RRdk~N~~~~~L~~lLP~~~~~~~kLDKaSILrlti~yLk~   61 (68)
                      ..+-..||+||+.+|+.|.+|+.+||-.......+.|.+||+.||.|++.
T Consensus         7 ~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~   56 (76)
T 3u5v_A            7 AHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILG   56 (76)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
T ss_pred             hhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHH
Confidence            34566899999999999999999999322233445799999999999976

>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1

Probab=98.71  E-value=2e-08  Score=61.07  Aligned_cols=46  Identities=24%  Similarity=0.333  Sum_probs=40.2

Q ss_pred             chhHHHhHHHhHHHHHHHHhcCCCCCccccchHHHHHHHHHHHHHHh
Q psy8266          15 SNPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRT   61 (68)
Q Consensus        15 ~~aeK~RRdk~N~~~~~L~~lLP~~~~~~~kLDKaSILrlti~yLk~   61 (68)
                      -..||+||+.+|+.|..|+.+||... ...+..|++||..|++|++.
T Consensus         6 N~~ER~RR~~lk~~f~~Lr~~vP~~~-~~~k~sk~~iL~kA~~yI~~   51 (80)
T 1nlw_A            6 NEMEKNRRAHLRLSLEKLKGLVPLGP-DSSRHTTLSLLTKAKLHIKK   51 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSSCCCS-SSCCCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCC-CCCCCCHHHHHHHHHHHHHH
Confidence            35899999999999999999999533 34788999999999999976

>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=98.61  E-value=2.3e-08  Score=60.22  Aligned_cols=47  Identities=17%  Similarity=0.221  Sum_probs=40.8

Q ss_pred             hhHHHhHHHhHHHHHHHHhcCCCCCccccchHHHHHHHHHHHHHHhhh
Q psy8266          16 NPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRTKS   63 (68)
Q Consensus        16 ~aeK~RRdk~N~~~~~L~~lLP~~~~~~~kLDKaSILrlti~yLk~~~   63 (68)
                      +-||+|...+|+.|++|+.+||... ...||.|..|||+||+|+...+
T Consensus        20 erER~Rm~~lN~aF~~LR~~VP~~p-~~kKLSKiEtLr~Ai~YI~~Lq   66 (68)
T 2lfh_A           20 EEPLSLLDDMNHCYSRLRELVPGVP-RGTQLSQVEILQRVIDYILDLQ   66 (68)
T ss_dssp             CCCSCSSSHHHHHHHHHHHHCCCCC-TTCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCC-CCCCccHHHHHHHHHHHHHHHH
Confidence            5688999999999999999999643 4489999999999999987643

>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}

Probab=98.14  E-value=3.2e-06  Score=52.45  Aligned_cols=41  Identities=27%  Similarity=0.449  Sum_probs=37.1

Q ss_pred             HHHhHHHHHHHHhcCCCCCccccchHHHHHHHHHHHHHHhh
Q psy8266          22 RERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRTK   62 (68)
Q Consensus        22 Rdk~N~~~~~L~~lLP~~~~~~~kLDKaSILrlti~yLk~~   62 (68)
                      |+.+|+.|.+|..|+|-..+...+..|.+||+-||+|++.-
T Consensus         4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~L   44 (83)
T 4ath_A            4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKL   44 (83)
T ss_dssp             HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHH
T ss_pred             hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHH
Confidence            88999999999999997666678999999999999999863

>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}

Probab=97.86  E-value=3.3e-05  Score=48.97  Aligned_cols=45  Identities=18%  Similarity=0.235  Sum_probs=37.5

Q ss_pred             HHHhHHHhHHHHHHHHhcCCCCCccccchHHHHHHHHHHHHHHhhh
Q psy8266          18 SKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRTKS   63 (68)
Q Consensus        18 eK~RRdk~N~~~~~L~~lLP~~~~~~~kLDKaSILrlti~yLk~~~   63 (68)
                      +++|=..+|+-|+.|+..||... ...||.|..+||+||.|+...+
T Consensus        33 ~r~Rm~~lN~AF~~LR~~vP~~p-~~kKLSKIETLRlAi~YI~~Lq   77 (97)
T 4aya_A           33 PMSLLYNMNDCYSKLKELVPSIP-QNKKVSKMEILQHVIDYILDLQ   77 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTSC-SSSCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCC-CCCcccHHHHHHHHHHHHHHHH
Confidence            45555779999999999999543 4589999999999999998754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	68
d1an4a_	65	a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapien	0.001
d1a0aa_	63	a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Sa	0.001
d1nkpb_	83	a.38.1.1 (B:) Max protein {Human (Homo sapiens) [T	0.004

>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Usf B/HLH domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 31.7 bits (72), Expect = 0.001
 Identities = 9/45 (20%), Positives = 23/45 (51%), Gaps = 2/45 (4%)

Query: 19 KRHRERLNAELDTLANLLP--FEQNILSKLDRLSILRLSVSYLRT 61
          +R R+++N  +  L+ ++P    ++  S   +  IL  +  Y++ 
Sbjct: 14 RRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQE 58

>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 63

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Pho4 B/HLH domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 31.4 bits (71), Expect = 0.001
 Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 3/45 (6%)

Query: 19 KRHRERLNAELDTLANLLP---FEQNILSKLDRLSILRLSVSYLR 60
          +  R RL   L  LA+L+P    +QN+ +   + + +  +  Y+R
Sbjct: 11 QARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIR 55

>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]} Length = 83

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Max protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 30.2 bits (68), Expect = 0.004
 Identities = 9/42 (21%), Positives = 19/42 (45%), Gaps = 2/42 (4%)

Query: 19 KRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLR 60
          ++ R+ +     +L + +P  Q    K  R  IL  +  Y++
Sbjct: 11 RKRRDHIKDSFHSLRDSVPSLQG--EKASRAQILDKATEYIQ 50

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	68
d1a0aa_	63	Pho4 B/HLH domain {Baker's yeast (Saccharomyces ce	99.37
d1mdya_	68	Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10	99.24
d1nlwa_	79	Mad protein {Human (Homo sapiens) [TaxId: 9606]}	99.2
d1an4a_	65	Usf B/HLH domain {Human (Homo sapiens) [TaxId: 960	99.18
d1am9a_	80	SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}	99.18
d1nkpb_	83	Max protein {Human (Homo sapiens) [TaxId: 9606]}	99.18
d1nkpa_	88	Myc proto-oncogene protein {Human (Homo sapiens) [	99.08
d1uklc_	61	SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}	98.64

>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Pho4 B/HLH domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.37  E-value=2e-13  Score=78.16  Aligned_cols=52  Identities=23%  Similarity=0.422  Sum_probs=44.5

Q ss_pred             CCCCchhHHHhHHHhHHHHHHHHhcCCC---CCccccchHHHHHHHHHHHHHHhh
Q psy8266          11 GVTKSNPSKRHRERLNAELDTLANLLPF---EQNILSKLDRLSILRLSVSYLRTK   62 (68)
Q Consensus        11 ~~~~~~aeK~RRdk~N~~~~~L~~lLP~---~~~~~~kLDKaSILrlti~yLk~~   62 (68)
                      +..+..+||+||+++|+.|.+|..+||-   ..+...++||++||+.||.|++.-
T Consensus         3 R~~H~~~Er~RR~~in~~~~~L~~llP~~~~~~~~~~k~sKa~iL~~Av~yI~~L   57 (63)
T d1a0aa_           3 RESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHL   57 (63)
T ss_dssp             TTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHCCCcccccCCcccccHHHHHHHHHHHHHHH
Confidence            3456789999999999999999999993   234568999999999999999863

>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myod B/HLH domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.24  E-value=5.5e-12  Score=73.22  Aligned_cols=46  Identities=20%  Similarity=0.364  Sum_probs=40.4

Q ss_pred             CchhHHHhHHHhHHHHHHHHhcCCCCCccccchHHHHHHHHHHHHHHh
Q psy8266          14 KSNPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRT   61 (68)
Q Consensus        14 ~~~aeK~RRdk~N~~~~~L~~lLP~~~~~~~kLDKaSILrlti~yLk~   61 (68)
                      +...||+||+++|+.|.+|..+||-++  ..++||++||+.||+|++.
T Consensus        16 hn~~Er~Rr~~in~~~~~L~~llP~~~--~~k~sK~~iL~~Ai~YI~~   61 (68)
T d1mdya_          16 ATMRERRRLSKVNEAFETLKRSTSSNP--NQRLPKVEILRNAIRYIEG   61 (68)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTSCSCT--TSCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCC--CCCCCHHHHHHHHHHHHHH
Confidence            345899999999999999999999543  3689999999999999975

>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Mad protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=3.3e-12  Score=75.10  Aligned_cols=47  Identities=23%  Similarity=0.330  Sum_probs=41.2

Q ss_pred             CchhHHHhHHHhHHHHHHHHhcCCCCCccccchHHHHHHHHHHHHHHh
Q psy8266          14 KSNPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRT   61 (68)
Q Consensus        14 ~~~aeK~RRdk~N~~~~~L~~lLP~~~~~~~kLDKaSILrlti~yLk~   61 (68)
                      +...||+||+++|+.|.+|+.+||... ...+++|++||+.||.|++.
T Consensus         5 Hn~~Er~RR~~in~~f~~L~~llP~~~-~~~k~sK~~iL~~A~~yI~~   51 (79)
T d1nlwa_           5 HNEMEKNRRAHLRLSLEKLKGLVPLGP-DSSRHTTLSLLTKAKLHIKK   51 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSSCCCS-SSCCCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCccCC-CCCCCCHHHHHHHHHHHHHH
Confidence            456899999999999999999999433 34689999999999999985

>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Usf B/HLH domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=2.5e-12  Score=73.85  Aligned_cols=53  Identities=17%  Similarity=0.302  Sum_probs=45.2

Q ss_pred             CCCCCchhHHHhHHHhHHHHHHHHhcCCCCC--ccccchHHHHHHHHHHHHHHhh
Q psy8266          10 DGVTKSNPSKRHRERLNAELDTLANLLPFEQ--NILSKLDRLSILRLSVSYLRTK   62 (68)
Q Consensus        10 ~~~~~~~aeK~RRdk~N~~~~~L~~lLP~~~--~~~~kLDKaSILrlti~yLk~~   62 (68)
                      .+..+..+||+||+++|+.|.+|..+||...  ....++||++||+.||.|++.-
T Consensus         5 rR~~H~~~Er~RR~~in~~f~~L~~lvP~~~~~~~~~k~sK~~iL~~av~yI~~L   59 (65)
T d1an4a_           5 RRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQEL   59 (65)
T ss_dssp             CCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCHHHHHHHHHHHHHHH
Confidence            3456788999999999999999999999544  2446999999999999999753

>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-1a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=6.2e-12  Score=74.40  Aligned_cols=46  Identities=26%  Similarity=0.415  Sum_probs=41.1

Q ss_pred             CCchhHHHhHHHhHHHHHHHHhcCCCCCccccchHHHHHHHHHHHHHHh
Q psy8266          13 TKSNPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRT   61 (68)
Q Consensus        13 ~~~~aeK~RRdk~N~~~~~L~~lLP~~~~~~~kLDKaSILrlti~yLk~   61 (68)
                      .+..+||+||+++|+.|.+|..+||-   ...++||++||..||.|++.
T Consensus         9 ~H~~~Er~RR~~in~~~~~L~~llP~---~~~k~~K~~iL~~a~~yI~~   54 (80)
T d1am9a_           9 AHNAIEKRYRSSINDKIIELKDLVVG---TEAKLNKSAVLRKAIDYIRF   54 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTC---SSCCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCC---CCCCCCHHHHHHHHHHHHHH
Confidence            35679999999999999999999993   34699999999999999986

>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Max protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=7.6e-12  Score=74.10  Aligned_cols=46  Identities=17%  Similarity=0.326  Sum_probs=40.4

Q ss_pred             CchhHHHhHHHhHHHHHHHHhcCCCCCccccchHHHHHHHHHHHHHHh
Q psy8266          14 KSNPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRT   61 (68)
Q Consensus        14 ~~~aeK~RRdk~N~~~~~L~~lLP~~~~~~~kLDKaSILrlti~yLk~   61 (68)
                      +..+||+||+++|+.|.+|+++||-  ....++||++||+.||.|++.
T Consensus         6 Hn~~Er~RR~~in~~f~~L~~llP~--~~~~k~sK~~iL~~A~~yI~~   51 (83)
T d1nkpb_           6 HNALERKRRDHIKDSFHSLRDSVPS--LQGEKASRAQILDKATEYIQY   51 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTSGG--GTTSCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCC--CCCCCCCHHHHHHHHHHHHHH
Confidence            4568999999999999999999993  234689999999999999975

>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myc proto-oncogene protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=6.1e-11  Score=70.73  Aligned_cols=47  Identities=17%  Similarity=0.284  Sum_probs=40.8

Q ss_pred             CchhHHHhHHHhHHHHHHHHhcCCCCCccccchHHHHHHHHHHHHHHh
Q psy8266          14 KSNPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRT   61 (68)
Q Consensus        14 ~~~aeK~RRdk~N~~~~~L~~lLP~~~~~~~kLDKaSILrlti~yLk~   61 (68)
                      +..+||+||+++|+.|.+|+.+||-.. ...+++|++||..||.|++.
T Consensus        10 Hn~~Er~RR~~in~~f~~Lr~llP~~~-~~~k~sK~~iL~~A~~yI~~   56 (88)
T d1nkpa_          10 HNVLERQRRNELKRSFFALRDQIPELE-NNEKAPKVVILKKATAYILS   56 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCGGGT-TCTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCCC-CCCccCHHHHHHHHHHHHHH
Confidence            456899999999999999999999422 33689999999999999985

>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=2.1e-09  Score=60.82  Aligned_cols=37  Identities=22%  Similarity=0.405  Sum_probs=33.2

Q ss_pred             HHHhHHHHHHHHhcCCCCCccccchHHHHHHHHHHHHHHh
Q psy8266          22 RERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRT   61 (68)
Q Consensus        22 Rdk~N~~~~~L~~lLP~~~~~~~kLDKaSILrlti~yLk~   61 (68)
                      |+++|+.|.+|..+||-   ...+.||++||..||.|++.
T Consensus         1 R~~in~~f~~L~~lvP~---~~~K~~Ka~iL~~Ai~YI~~   37 (61)
T d1uklc_           1 RSSINDKIIELKDLVMG---TDAKMHKSGVLRKAIDYIKY   37 (61)
T ss_dssp             CCCHHHHHHHHHHHHSC---SSCCCCTTTHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHhhCCC---CCCcccHHHHHHHHHHHHHH
Confidence            78899999999999993   34699999999999999985