Psyllid ID: psy8267

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-----
MAKGTCCYMMAKGRDASDLFPAVVKNVVSKNIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDPNQLIRASALRVLSSIRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKEELVLVIEKLLQDKTTLVVGSAVMAFEEVCPERIDMIHKSYRKLCNLLVDVDEWGQVFILNMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNETSQVSTELDPDHRLLLKNAKPLLQSRNAAVVMAVAQLFHHLAPRREVAIIAKALVRLLRSSREVQTVVLTTIASLAVKRRALFVPYLKSFYVRSSDPTHVKTLKLELLTTLASETSIASILREFQTYISSVDKAFVAATVQAIGKCAANIAQVTDTCLTGLVSLLSYSDEAVVAESVVVIKNLLQTQPEAYTDIIRHMVRLSDSITVPTARAAILWLLGEYSHLVPALGPDVLRKAAITFVNEEDIVKLQVLNLAPVEAAGITTLPPAFTSPRYTEVLNKIGGGRGMLSALASFSRAPCLASPRMISVTLRLTNHHGAPLSRVRIDSEGSSLGHGMSMQPFPEIASIDPGLAVEVSLGLNLNDSTQPLSPRLVWGVEGEDGLSAPLKLSAPVGEWLRAVTMSTALFDAEKGN
cccHHHHHHHHccccccccHHHHHHHcccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcHHcHHHHHcEEEEcccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHcccccccccccEEccccccccccccEEEEEEccccccccccEEEccccccccccccccccccccccccccEEEEEEEEEccccccccccEEEEcccccccccccEEEEcccccccccccccHHHHHHHHcc
cHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHccHHHHHccccccccccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccHcHHHHEEEEEEccccHHHHHHHHHHHHHHHcHHcHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHcccccHHHEEHHEEccccccccEEEEcccccccccHHHHHHHEEccccEEEEEccccccccccccEEEEEEEEEccccccccEEEEcccccccccccEEccccccHccccccEEEEEEEEEcccccccEEEEEEEEEccccccEEEEEEEccccHEEccEEccHHHHHHHHcc
makgtccymmakgrdasdlfPAVVKNVVSKNIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDPNQLIRASALRVLssirvpmiIPIVMLAIkdssldmspyvRKTAAhaipklysldpeqKEELVLVIEKLLQDKTTLVVGSAVMAFEEVCPERIDMIHKSYRKLCNLLVDVDEWGQVFILNMLTRYartqftdpnlnendsseddddldgedkkpfyddettrdtknetsqvsteldpdhRLLLKnakpllqsRNAAVVMAVAQLFHHLAPRREVAIIAKALVRLLRSSREVQTVVLTTIASLAVKRRALFVPYLksfyvrssdpthvKTLKLELLTTLASETSIASILREFQTYISSVDKAFVAATVQAIGKCAANIAQVTDTCLTGLVSLlsysdeavVAESVVVIKNLLQTQPEAYTDIIRHMVrlsdsitvPTARAAILWLLGEYshlvpalgpdvLRKAAITFVNEEDIVKLQVlnlapveaagittlppaftspryTEVLNKIGGGRGMLSALAsfsrapclasprMISVTLRltnhhgaplsrvridsegsslghgmsmqpfpeiasidpglAVEVSLglnlndstqplsprlvwgvegedglsaplklsapvgEWLRAVTMSTAlfdaekgn
makgtccymmakgrdasdlfpAVVKNVvsknievkKLVYVYLARYAEEQQDLALLSISTFQRALKDPNQLIRASALRvlssirvpMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKEELVLVIEKLLQDKTTLVVGSAVMAFEEVCPERIDMIHKSYRKLCNLLVDVDEWGQVFILNMLTRYARtqftdpnlnendsseddddldgedkkpfyddettrdtknetsqvsteldpdhRLLLKNAKPLLQSRNAAVVMAVAQLFHHLAPRREVAIIAKALVRLlrssrevqtVVLTTiaslavkrrALFVPYLKsfyvrssdpthVKTLKLELLTTLASETSIASILREFQTYISSVDKAFVAATVQAIGKCAANIAQVTDTCLTGLVSLLSYSDEAVVAESVVVIKNLLQTQPEAYTDIIRHMVRLSDSITVPTARAAILWLLGEYSHLVPALGPDVLRKAAITFVNEEDIVKLQVLNLAPVEAAGittlppaftsprYTEVLNKIGGGRGMLSALASFSRAPCLASPRMISVTLRLtnhhgaplsrVRIDSEGSSLGHGMSMQPFPEIASIDPGLAVEVSLGLNLNDSTQPLSPRLVWGVEGEDGLSAPLKLSAPVGEWLRAVTMSTALFDAEKGN
MAKGTCCYMMAKGRDASDLFPAVVKNVVSKNIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDPNQLIRASALRVLSSIRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPeqkeelvlviekllqDKTTLVVGSAVMAFEEVCPERIDMIHKSYRKLCNLLVDVDEWGQVFILNMLTRYARTQFTdpnlnendsseddddldgedkkpFYDDETTRDTKNETSQVSTELDPDHRLLLKNAKPLLQSRNAAVVMAVAQLFHHLAPRREVAIIAKALVRLLRSSREVQTVVLTTIASLAVKRRALFVPYLKSFYVRSSDPTHVktlklellttlasetsiasiLREFQTYISSVDKAFVAATVQAIGKCAANIAQVTDTCLTGLVSLLSYsdeavvaesvvvIKNLLQTQPEAYTDIIRHMVRLSDSITVPTARAAILWLLGEYSHLVPALGPDVLRKAAITFVNEEDIVKLQVLNLAPVEAAGITTLPPAFTSPRYTEVLNKIGGGRGMLSALASFSRAPCLASPRMISVTLRLTNHHGAPLSRVRIDSEGSSLGHGMSMQPFPEIASIDPGLAVEVSLGLNLNDSTQPLSPRLVWGVEGEDGLSAPLKLSAPVGEWLRAVTMSTALFDAEKGN
****TCCYMMAKGRDASDLFPAVVKNVVSKNIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDPNQLIRASALRVLSSIRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKEELVLVIEKLLQDKTTLVVGSAVMAFEEVCPERIDMIHKSYRKLCNLLVDVDEWGQVFILNMLTRYARTQF***************************************************LLKNAKPLLQSRNAAVVMAVAQLFHHLAPRREVAIIAKALVRLLRSSREVQTVVLTTIASLAVKRRALFVPYLKSFYVRSSDPTHVKTLKLELLTTLASETSIASILREFQTYISSVDKAFVAATVQAIGKCAANIAQVTDTCLTGLVSLLSYSDEAVVAESVVVIKNLLQTQPEAYTDIIRHMVRLSDSITVPTARAAILWLLGEYSHLVPALGPDVLRKAAITFVNEEDIVKLQVLNLAPVEAAGITTLPPAFTSPRYTEVLNKIGGGRGMLSALASFSRAPCLASPRMISVTLRLTNHHG***************************ASIDPGLAVEVSLGLNLNDSTQPLSPRLVWGVEGEDGLSAPLKLSAPVGEWLRAVTMSTALF******
MAKGTCCYMMAKGRDASDLFPAVVKNVVSKNIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDPNQLIRASALRVLSSIRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKEELVLVIEKLLQDKTTLVVGSAVMAFEEVCPERIDMIHKSYRKLCNLLVDVDEWGQVFILNMLTRYARTQFTDPNLNENDSSE****************************VSTELDPDHRLLLKNAKPLLQSRNAAVVMAVAQLFHHLAPRREVAIIAKALVRLLRSSREVQTVVLTTIASLAVKRRALFVPYLKSFYVRSSDPTHVKTLKLELLTTLASETSIASILREFQTYISSVDKAFVAATVQAIGKCAANIAQVTDTCLTGLVSLLSYSDEAVVAESVVVIKNLLQTQPEAYTDIIRHMVRLSDSITVPTARAAILWLLGEYSHLVPALGPDVLRKAAITFVNEEDIVKLQVLNLAPVEAAGITTLPPAFTSPRYTEVLNKIGGGRGMLSALASFSRAPCLA****I*****************RID*********M**QPF****SIDP*LAVEVSLGLNLNDSTQPLSPRLVWGVEGEDGLSAPLKLSAPVGEWLRAVTMSTA*F******
MAKGTCCYMMAKGRDASDLFPAVVKNVVSKNIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDPNQLIRASALRVLSSIRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKEELVLVIEKLLQDKTTLVVGSAVMAFEEVCPERIDMIHKSYRKLCNLLVDVDEWGQVFILNMLTRYARTQFTDPNLNE**********DGEDKKPFYDD*****************DPDHRLLLKNAKPLLQSRNAAVVMAVAQLFHHLAPRREVAIIAKALVRLLRSSREVQTVVLTTIASLAVKRRALFVPYLKSFYVRSSDPTHVKTLKLELLTTLASETSIASILREFQTYISSVDKAFVAATVQAIGKCAANIAQVTDTCLTGLVSLLSYSDEAVVAESVVVIKNLLQTQPEAYTDIIRHMVRLSDSITVPTARAAILWLLGEYSHLVPALGPDVLRKAAITFVNEEDIVKLQVLNLAPVEAAGITTLPPAFTSPRYTEVLNKIGGGRGMLSALASFSRAPCLASPRMISVTLRLTNHHGAPLSRVRIDSEGSSLGHGMSMQPFPEIASIDPGLAVEVSLGLNLNDSTQPLSPRLVWGVEGEDGLSAPLKLSAPVGEWLRAVTMSTALFDAEKGN
MAKGTCCYMMAKGRDASDLFPAVVKNVVSKNIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDPNQLIRASALRVLSSIRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKEELVLVIEKLLQDKTTLVVGSAVMAFEEVCPERIDMIHKSYRKLCNLLVDVDEWGQVFILNMLTRYARTQFTDPN**********************************SQVSTELDPDHRLLLKNAKPLLQSRNAAVVMAVAQLFHHLAPRREVAIIAKALVRLLRSSREVQTVVLTTIASLAVKRRALFVPYLKSFYVRSSDPTHVKTLKLELLTTLASETSIASILREFQTYISSVDKAFVAATVQAIGKCAANIAQVTDTCLTGLVSLLSYSDEAVVAESVVVIKNLLQTQPEAYTDIIRHMVRLSDSITVPTARAAILWLLGEYSHLVPALGPDVLRKAAITFVNEEDIVKLQVLNLAPVEAAGITTLPPAFTSPRYTEVLNKIGGGRGMLSALASFSRAPCLASPRMISVTLRLTNHHGAPLSRVRIDSEGSSLGHGMSMQPFPEIASIDPGLAVEVSLGLNLNDSTQPLSPRLVWGVEGEDGLSAPLKLSAPVGEWLRAVTMSTALFDA****
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MAKGTCCYMMAKGRDASDLFPAVVKNVVSKNIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDPNQLIRASALRVLSSIRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKEELVLVIEKLLQDKTTLVVGSAVMAFEEVCPERIDMIHKSYRKLCNLLVDVDEWGQVFILNMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNETSQVSTELDPDHRLLLKNAKPLLQSRNAAVVMAVAQLFHHLAPRREVAIIAKALVRLLRSSREVQTVVLTTIASLAVKRRALFVPYLKSFYVRSSDPTHVKTLKLELLTTLASETSIASILREFQTYISSVDKAFVAATVQAIGKCAANIAQVTDTCLTGLVSLLSYSDEAVVAESVVVIKNLLQTQPEAYTDIIRHMVRLSDSITVPTARAAILWLLGEYSHLVPALGPDVLRKAAITFVNEEDIVKLQVLNLAPVEAAGITTLPPAFTSPRYTEVLNKIGGGRGMLSALASFSRAPCLASPRMISVTLRLTNHHGAPLSRVRIDSEGSSLGHGMSMQPFPEIASIDPGLAVEVSLGLNLNDSTQPLSPRLVWGVEGEDGLSAPLKLSAPVGEWLRAVTMSTALFDAEKGN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query645 2.2.26 [Sep-21-2011]
Q13367 1082 AP-3 complex subunit beta yes N/A 0.733 0.437 0.691 0.0
Q7YRF1 1091 AP-3 complex subunit beta yes N/A 0.731 0.432 0.685 0.0
Q9JME5 1082 AP-3 complex subunit beta yes N/A 0.733 0.437 0.687 0.0
O00203 1094 AP-3 complex subunit beta no N/A 0.731 0.431 0.687 0.0
Q32PG1 1084 AP-3 complex subunit beta no N/A 0.731 0.435 0.681 0.0
Q9Z1T1 1105 AP-3 complex subunit beta no N/A 0.733 0.428 0.677 0.0
Q556J8 1108 AP-3 complex subunit beta yes N/A 0.722 0.420 0.453 1e-123
O13939745 AP-3 complex subunit beta yes N/A 0.680 0.589 0.349 2e-67
Q08DS7 951 AP-1 complex subunit beta no N/A 0.624 0.423 0.318 1e-59
Q9M2T1 987 AP3-complex subunit beta- no N/A 0.623 0.407 0.353 1e-59
>sp|Q13367|AP3B2_HUMAN AP-3 complex subunit beta-2 OS=Homo sapiens GN=AP3B2 PE=1 SV=2 Back     alignment and function desciption
 Score =  683 bits (1762), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/489 (69%), Positives = 400/489 (81%), Gaps = 16/489 (3%)

Query: 9   MMAKGRDASDLFPAVVKNVVSKNIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDPN 68
           M+A+G++ASDLFPAVVKNV  KNIEVKKLVYVYL RYAEEQQDLALLSISTFQR LKDPN
Sbjct: 64  MIARGKNASDLFPAVVKNVACKNIEVKKLVYVYLVRYAEEQQDLALLSISTFQRGLKDPN 123

Query: 69  QLIRASALRVLSSIRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKEEL 128
           QLIRASALRVLSSIRVP+I+PI+MLAIK+++ DMSPYVRKTAAHAIPKLYSLD +QK++L
Sbjct: 124 QLIRASALRVLSSIRVPIIVPIMMLAIKEAASDMSPYVRKTAAHAIPKLYSLDSDQKDQL 183

Query: 129 VLVIEKLLQDKTTLVVGSAVMAFEEVCPERIDMIHKSYRKLCNLLVDVDEWGQVFILNML 188
           + VIEKLL DKTTLV GS VMAFEEVCPERID+IHK+YRKLCNLL+DV+EWGQV I++ML
Sbjct: 184 IEVIEKLLADKTTLVAGSVVMAFEEVCPERIDLIHKNYRKLCNLLIDVEEWGQVVIISML 243

Query: 189 TRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFY---DDETTRDTKNETSQVSTE----- 240
           TRYARTQF  P  NE+   E+ +       K FY   +DE       ET+  +       
Sbjct: 244 TRYARTQFLSPTQNESLLEENAE-------KAFYGSEEDEAKGAGSEETAAAAAPSRKPY 296

Query: 241 -LDPDHRLLLKNAKPLLQSRNAAVVMAVAQLFHHLAPRREVAIIAKALVRLLRSSREVQT 299
            +DPDHRLLL+N KPLLQSR+AAVVMAVAQL+ HLAP+ EV +IAKALVRLLRS  EVQ 
Sbjct: 297 VMDPDHRLLLRNTKPLLQSRSAAVVMAVAQLYFHLAPKAEVGVIAKALVRLLRSHSEVQY 356

Query: 300 VVLTTIASLAVKRRALFVPYLKSFYVRSSDPTHVKTLKLELLTTLASETSIASILREFQT 359
           VVL  +A++++KRR +F PYLKSFY+RS+DPT +K LKLE+LT LA+ET+I ++LREFQT
Sbjct: 357 VVLQNVATMSIKRRGMFEPYLKSFYIRSTDPTQIKILKLEVLTNLANETNIPTVLREFQT 416

Query: 360 YISSVDKAFVAATVQAIGKCAANIAQVTDTCLTGLVSLLSYSDEAVVAESVVVIKNLLQT 419
           YI S+DK FVAAT+QAIG+CA NI +V DTCL GLV LLS  DE VVAESVVVIK LLQ 
Sbjct: 417 YIRSMDKDFVAATIQAIGRCATNIGRVRDTCLNGLVQLLSNRDELVVAESVVVIKKLLQM 476

Query: 420 QPEAYTDIIRHMVRLSDSITVPTARAAILWLLGEYSHLVPALGPDVLRKAAITFVNEEDI 479
           QP  + +II+H+ +L+D+I VP ARA+ILWL+GEY   VP + PDVLRK A +F  EEDI
Sbjct: 477 QPAQHGEIIKHLAKLTDNIQVPMARASILWLIGEYCEHVPRIAPDVLRKMAKSFTAEEDI 536

Query: 480 VKLQVLNLA 488
           VKLQV+NLA
Sbjct: 537 VKLQVINLA 545
Subunit of non-clathrin- and clathrin-associated adaptor protein complex 3 that plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The AP complexes mediate both the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules. AP-3 appears to be involved in the sorting of a subset of transmembrane proteins targeted to lysosomes and lysosome-related organelles.
Homo sapiens (taxid: 9606)
>sp|Q7YRF1|AP3B1_CANFA AP-3 complex subunit beta-1 OS=Canis familiaris GN=AP3B1 PE=2 SV=1 Back     alignment and function description
>sp|Q9JME5|AP3B2_MOUSE AP-3 complex subunit beta-2 OS=Mus musculus GN=Ap3b2 PE=1 SV=2 Back     alignment and function description
>sp|O00203|AP3B1_HUMAN AP-3 complex subunit beta-1 OS=Homo sapiens GN=AP3B1 PE=1 SV=3 Back     alignment and function description
>sp|Q32PG1|AP3B1_BOVIN AP-3 complex subunit beta-1 OS=Bos taurus GN=AP3B1 PE=2 SV=1 Back     alignment and function description
>sp|Q9Z1T1|AP3B1_MOUSE AP-3 complex subunit beta-1 OS=Mus musculus GN=Ap3b1 PE=1 SV=2 Back     alignment and function description
>sp|Q556J8|AP3B_DICDI AP-3 complex subunit beta OS=Dictyostelium discoideum GN=ap3b-1 PE=3 SV=1 Back     alignment and function description
>sp|O13939|AP3B_SCHPO AP-3 complex subunit beta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=apl6 PE=1 SV=1 Back     alignment and function description
>sp|Q08DS7|AP1B1_BOVIN AP-1 complex subunit beta-1 OS=Bos taurus GN=AP2B1 PE=2 SV=1 Back     alignment and function description
>sp|Q9M2T1|AP3BA_ARATH AP3-complex subunit beta-A OS=Arabidopsis thaliana GN=AP3BA PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query645
307173498 1046 AP-3 complex subunit beta-2 [Camponotus 0.725 0.447 0.754 0.0
307204863 1047 AP-3 complex subunit beta-2 [Harpegnatho 0.725 0.446 0.754 0.0
345485002 1090 PREDICTED: AP-3 complex subunit beta-2-l 0.728 0.431 0.743 0.0
170047076 1100 Beta3 protein [Culex quinquefasciatus] g 0.758 0.444 0.715 0.0
322799782 1067 hypothetical protein SINV_02186 [Solenop 0.725 0.438 0.733 0.0
157120529 1089 hypothetical protein AaeL_AAEL009039 [Ae 0.762 0.451 0.685 0.0
260829661 1065 hypothetical protein BRAFLDRAFT_58684 [B 0.730 0.442 0.719 0.0
347969109 1173 AGAP003035-PA [Anopheles gambiae str. PE 0.734 0.404 0.709 0.0
340722020 1049 PREDICTED: AP-3 complex subunit beta-1-l 0.725 0.446 0.747 0.0
380012971 1048 PREDICTED: AP-3 complex subunit beta-1-l 0.725 0.446 0.747 0.0
>gi|307173498|gb|EFN64408.1| AP-3 complex subunit beta-2 [Camponotus floridanus] Back     alignment and taxonomy information
 Score =  736 bits (1899), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/480 (75%), Positives = 411/480 (85%), Gaps = 12/480 (2%)

Query: 9   MMAKGRDASDLFPAVVKNVVSKNIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDPN 68
           M+AKGRDAS+LFPAVVKNVVSKNIEVKKLVYVYL RYAE+QQDLALLSISTFQRALKDPN
Sbjct: 70  MVAKGRDASELFPAVVKNVVSKNIEVKKLVYVYLVRYAEDQQDLALLSISTFQRALKDPN 129

Query: 69  QLIRASALRVLSSIRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKEEL 128
           QLIRASALRVLSSIRV MI+PIVMLAIKDS+ DMSPYVRKTAAHAIPKLYSLDPEQKEEL
Sbjct: 130 QLIRASALRVLSSIRVSMIVPIVMLAIKDSASDMSPYVRKTAAHAIPKLYSLDPEQKEEL 189

Query: 129 VLVIEKLLQDKTTLVVGSAVMAFEEVCPERIDMIHKSYRKLCNLLVDVDEWGQVFILNML 188
           + V+EKLL DKTTLVVGSAVMAFEEVCPERID+IHK+YRKLCNLLVDVDEWGQV I+NML
Sbjct: 190 ISVLEKLLSDKTTLVVGSAVMAFEEVCPERIDLIHKNYRKLCNLLVDVDEWGQVVIVNML 249

Query: 189 TRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNETSQVSTELDPDHRLL 248
           TRYAR QF +PN          D+LD ++ +PFYD ++  D+ N T +    LDPDHRLL
Sbjct: 250 TRYARAQFVNPNT---------DNLDKDENRPFYDSDS--DSSN-TKKPKFTLDPDHRLL 297

Query: 249 LKNAKPLLQSRNAAVVMAVAQLFHHLAPRREVAIIAKALVRLLRSSREVQTVVLTTIASL 308
           L+N KPLLQSRNA+VVMAVAQL+HH APR EV I AKAL+RLLR  REVQ++VL  IAS+
Sbjct: 298 LRNTKPLLQSRNASVVMAVAQLYHHAAPRSEVMIAAKALIRLLRCHREVQSIVLHCIASI 357

Query: 309 AVKRRALFVPYLKSFYVRSSDPTHVKTLKLELLTTLASETSIASILREFQTYISSVDKAF 368
           ++ R+ +F P+LKSF+VR+SDPTH+K LKL++LT LA+ETSI  ILREFQTYISS DK F
Sbjct: 358 SITRKGMFEPFLKSFFVRTSDPTHIKLLKLDILTNLATETSIGVILREFQTYISSSDKEF 417

Query: 369 VAATVQAIGKCAANIAQVTDTCLTGLVSLLSYSDEAVVAESVVVIKNLLQTQPEAYTDII 428
           V A++QAIG+CA+NI +VTDTCL GLVSLLS  DEA+VAESVVVIK LLQTQP  + DII
Sbjct: 418 VGASIQAIGRCASNIKEVTDTCLNGLVSLLSNRDEAIVAESVVVIKKLLQTQPNEHKDII 477

Query: 429 RHMVRLSDSITVPTARAAILWLLGEYSHLVPALGPDVLRKAAITFVNEEDIVKLQVLNLA 488
            HM +L D ITVP ARA+ILWLLGEYS  VP + PDVLRK A +FVNE+DIVKLQ LNLA
Sbjct: 478 GHMAKLMDFITVPQARASILWLLGEYSDRVPKIAPDVLRKMAKSFVNEQDIVKLQTLNLA 537

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|307204863|gb|EFN83421.1| AP-3 complex subunit beta-2 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|345485002|ref|XP_001605478.2| PREDICTED: AP-3 complex subunit beta-2-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|170047076|ref|XP_001851063.1| Beta3 protein [Culex quinquefasciatus] gi|167869626|gb|EDS33009.1| Beta3 protein [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|322799782|gb|EFZ20979.1| hypothetical protein SINV_02186 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|157120529|ref|XP_001653649.1| hypothetical protein AaeL_AAEL009039 [Aedes aegypti] gi|108874924|gb|EAT39149.1| AAEL009039-PA, partial [Aedes aegypti] Back     alignment and taxonomy information
>gi|260829661|ref|XP_002609780.1| hypothetical protein BRAFLDRAFT_58684 [Branchiostoma floridae] gi|229295142|gb|EEN65790.1| hypothetical protein BRAFLDRAFT_58684 [Branchiostoma floridae] Back     alignment and taxonomy information
>gi|347969109|ref|XP_001688349.2| AGAP003035-PA [Anopheles gambiae str. PEST] gi|333467694|gb|EDO64201.2| AGAP003035-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|340722020|ref|XP_003399410.1| PREDICTED: AP-3 complex subunit beta-1-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|380012971|ref|XP_003690545.1| PREDICTED: AP-3 complex subunit beta-1-like [Apis florea] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query645
UNIPROTKB|F1NY63 1060 AP3B2 "Uncharacterized protein 0.733 0.446 0.629 1.1e-168
UNIPROTKB|E1BW97 1100 AP3B1 "Uncharacterized protein 0.733 0.43 0.617 4.4e-167
MGI|MGI:1333879 1105 Ap3b1 "adaptor-related protein 0.731 0.427 0.607 3.5e-165
UNIPROTKB|F1PVY2 1090 AP3B1 "AP-3 complex subunit be 0.730 0.432 0.611 4.5e-165
UNIPROTKB|F1S2G1 1058 F1S2G1 "Uncharacterized protei 0.730 0.445 0.613 1.5e-164
UNIPROTKB|Q7YRF1 1091 AP3B1 "AP-3 complex subunit be 0.730 0.431 0.607 6.5e-164
UNIPROTKB|B7ZKS0 1101 AP3B2 "AP-3 complex subunit be 0.737 0.432 0.617 9.5e-163
UNIPROTKB|Q13367 1082 AP3B2 "AP-3 complex subunit be 0.737 0.439 0.617 9.5e-163
RGD|1310256 1096 Ap3b1 "adaptor-related protein 0.727 0.427 0.605 1.2e-162
UNIPROTKB|Q32PG1 1084 AP3B1 "AP-3 complex subunit be 0.730 0.434 0.607 1.2e-162
UNIPROTKB|F1NY63 AP3B2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
 Score = 1490 (529.6 bits), Expect = 1.1e-168, Sum P(2) = 1.1e-168
 Identities = 306/486 (62%), Positives = 358/486 (73%)

Query:     9 MMAKGRDASDLFPAVVKNVVSKNIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDPN 68
             M+A+G++ASDLFPAVVKNV  KNIEVKKLVYVYL RYAEEQQDLALLSISTFQR LKDPN
Sbjct:    26 MIARGKNASDLFPAVVKNVACKNIEVKKLVYVYLVRYAEEQQDLALLSISTFQRGLKDPN 85

Query:    69 QLIRASALRVLSSIRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPXXXXXX 128
             QLIRASALRVLSSIRVP+I+PI+MLAIK+++ DMSPYVRKTAAHAIPKLYSLD       
Sbjct:    86 QLIRASALRVLSSIRVPIIVPIMMLAIKEAASDMSPYVRKTAAHAIPKLYSLDSDQKDQL 145

Query:   129 XXXXXXXXXDKTTLVVGSAVMAFEEVCPERIDMIHKSYRKLCNLLVDVDEWGQVFILNML 188
                      DKTTLV GS VMAFEEVCPERID+IHK+YRKLCNLL+DV+EWGQV I+NML
Sbjct:   146 IEVIEKLLADKTTLVAGSVVMAFEEVCPERIDLIHKNYRKLCNLLIDVEEWGQVVIINML 205

Query:   189 TRYARTQFTXXXXXXXXXXXXXXXXXXXXXXXFY--DDETTRDTKNETSQVSTE----LD 242
             TRYARTQF                        FY  ++E T+D K E + ++      +D
Sbjct:   206 TRYARTQFLSPNQNESLLEESAEKA-------FYGSEEEDTKDAKAEAASLAMRKPYVMD 258

Query:   243 PDHRLLLKNAKPLLQSRNAAVVMAVAQLFHHLAPRREVAIIAKALVRLLRSSREVQTVVL 302
             PDHRLL++N KPLLQSRNAAVVMAVAQL+ HLAP+ EV +IAKALVRLLRS  EVQ VVL
Sbjct:   259 PDHRLLVRNTKPLLQSRNAAVVMAVAQLYFHLAPKAEVGVIAKALVRLLRSHSEVQYVVL 318

Query:   303 TTIASLAVKRRALFVPYLKSFYVRSSDPTHVXXXXXXXXXXXXXXXXXXXXLREFQTYIS 362
               +A++++KRR +F PYLKSFY+RS+DPT +                    LREFQTYI 
Sbjct:   319 QNVATMSIKRRGMFEPYLKSFYIRSTDPTQIKILKLEVLTNLANETNISTILREFQTYIR 378

Query:   363 SVDKAFVAATVQAIGKCAANIAQVTDTCLTGLVSLLSYXXXXXXXXXXXXIKNLLQTQPE 422
             S+DK FVAAT+QAIG+CA NI +V DTCL GLV LLS             IK LLQ QP 
Sbjct:   379 SMDKDFVAATIQAIGRCATNIGKVRDTCLNGLVQLLSNRDELVVAESVVVIKKLLQMQPA 438

Query:   423 AYTDIIRHMVRLSDSITVPTARAAILWLLGEYSHLVPALGPDVLRKAAITFVNEEDIVKL 482
              +++II+HM +L+D+I VP ARA+ILWL+GEY   VP + PDVLRK A +F NEEDIVKL
Sbjct:   439 QHSEIIKHMAKLTDNIQVPMARASILWLIGEYCEHVPKIAPDVLRKMAKSFTNEEDIVKL 498

Query:   483 QVLNLA 488
             QV+NLA
Sbjct:   499 QVINLA 504
GO:0006886 "intracellular protein transport" evidence=IEA
GO:0030123 "AP-3 adaptor complex" evidence=IEA
GO:0005634 "nucleus" evidence=IEA
GO:0005794 "Golgi apparatus" evidence=IEA
GO:0008089 "anterograde axon cargo transport" evidence=IEA
GO:0048490 "anterograde synaptic vesicle transport" evidence=IEA
UNIPROTKB|E1BW97 AP3B1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
MGI|MGI:1333879 Ap3b1 "adaptor-related protein complex 3, beta 1 subunit" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1PVY2 AP3B1 "AP-3 complex subunit beta-1" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1S2G1 F1S2G1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q7YRF1 AP3B1 "AP-3 complex subunit beta-1" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|B7ZKS0 AP3B2 "AP-3 complex subunit beta-2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q13367 AP3B2 "AP-3 complex subunit beta-2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1310256 Ap3b1 "adaptor-related protein complex 3, beta 1 subunit" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q32PG1 AP3B1 "AP-3 complex subunit beta-1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q7YRF1AP3B1_CANFANo assigned EC number0.68540.73170.4326yesN/A
Q13367AP3B2_HUMANNo assigned EC number0.69120.73330.4371yesN/A
Q9JME5AP3B2_MOUSENo assigned EC number0.68710.73330.4371yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query645
pfam01602522 pfam01602, Adaptin_N, Adaptin N terminal region 1e-132
COG5096757 COG5096, COG5096, Vesicle coat complex, various su 2e-56
PTZ00429746 PTZ00429, PTZ00429, beta-adaptin; Provisional 1e-48
pfam12717171 pfam12717, Cnd1, non-SMC mitotic condensation comp 2e-05
pfam1364688 pfam13646, HEAT_2, HEAT repeats 2e-04
COG1413335 COG1413, COG1413, FOG: HEAT repeat [Energy product 8e-04
pfam1364688 pfam13646, HEAT_2, HEAT repeats 0.004
>gnl|CDD|216598 pfam01602, Adaptin_N, Adaptin N terminal region Back     alignment and domain information 
 Score =  398 bits (1025), Expect = e-132
 Identities = 164/490 (33%), Positives = 238/490 (48%), Gaps = 55/490 (11%)

Query: 8   YMMAKGRDASDLFPAVVKNVVSKNIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDP 67
           Y++  G D S LF  VVK V S +  +K+L Y+YL   AEE  DLA+L  ++ ++ L+ P
Sbjct: 31  YLIMLGEDISFLFFEVVKLVASNDFTLKRLGYLYLKLLAEESPDLAILVTNSIKKDLQSP 90

Query: 68  NQLIRASALRVLSSIRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQ-KE 126
           N LIR  ALR LS IRVP +   +   IK   +D  PYVRK AA AI KLY  DP+  ++
Sbjct: 91  NPLIRGLALRTLSCIRVPELARDLAPDIKKLLVDRDPYVRKKAALAILKLYRKDPDLVRD 150

Query: 127 ELVLVIEKLLQDKTTLVVGSAVMAFEEVC----PERIDMIHKSYRKLCNLLVDVDEWGQV 182
            LV  +++LL DK   VV +AV    E+          ++    R+LCNLL   + W QV
Sbjct: 151 FLVPELKELLSDKDPGVVSAAVALLYEIRKNDRLYLNKLLPLLVRRLCNLLTVCNPWLQV 210

Query: 183 FILNMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNETSQVSTELD 242
            IL +LTRYA     +P                                           
Sbjct: 211 KILRLLTRYAPQDPREP------------------------------------------- 227

Query: 243 PDHRLLLKNAKPLLQSRNAAVVMAVAQLFHHLAPRREVAI-IAKALVRLLRSSRE-VQTV 300
              + LL++   LLQ+ N AV+    +   HL P  E+ +    AL RLL S  E ++ V
Sbjct: 228 ---KELLEDILNLLQNSNNAVLYEAVKTIIHLDPEPELIVLAVNALGRLLSSPDENLRYV 284

Query: 301 VLTTIASLAVKR-RALFVPYLKSFYVRSSDPTHVKTLKLELLTTLASETSIASILREFQT 359
            L  +  +  K   A+    L  F +++ D   ++   L+LL  L  E+++  I++E   
Sbjct: 285 ALRNLNKILEKHPPAVQHLDLIIFCLKTDDDISIRLRALDLLYKLVDESNVKEIVKELLK 344

Query: 360 YISSV-DKAFVAATVQAIGKCAANIAQVTDTCLTGLVSLLSYSDEAVVAESVVVIKNLLQ 418
           Y+S + D  F    V+AIG+ A       + C+  L+ LLS +   VV E V VI+++++
Sbjct: 345 YVSEIADPEFKIKLVKAIGRLAEKFPTDAEWCIDVLLELLSLAGSYVVDEIVEVIRDIIR 404

Query: 419 TQPEAYTDIIRHMVRLSDSITVPTARAAILWLLGEYSHLVPALGPDVLRKAAITFVNEED 478
             PE    I+ H+  L + I  P ARAA LW+LGEY  L+P    D+LR     FV E  
Sbjct: 405 KYPELREYILEHLCELLEDIESPEARAAALWILGEYGELIPNSPSDLLRSILEVFVLESL 464

Query: 479 IVKLQVLNLA 488
            V+L +L   
Sbjct: 465 KVRLALLTAL 474

This family consists of the N terminal region of various alpha, beta and gamma subunits of the AP-1, AP-2 and AP-3 adaptor protein complexes. The adaptor protein (AP) complexes are involved in the formation of clathrin-coated pits and vesicles. The N-terminal region of the various adaptor proteins (APs) is constant by comparison to the C-terminal which is variable within members of the AP-2 family; and it has been proposed that this constant region interacts with another uniform component of the coated vesicles. Length = 522
>gnl|CDD|227427 COG5096, COG5096, Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|240415 PTZ00429, PTZ00429, beta-adaptin; Provisional Back     alignment and domain information
>gnl|CDD|221731 pfam12717, Cnd1, non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>gnl|CDD|222285 pfam13646, HEAT_2, HEAT repeats Back     alignment and domain information
>gnl|CDD|224331 COG1413, COG1413, FOG: HEAT repeat [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|222285 pfam13646, HEAT_2, HEAT repeats Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 645
KOG1060|consensus968 100.0
PTZ00429746 beta-adaptin; Provisional 100.0
KOG1077|consensus938 100.0
KOG1061|consensus734 100.0
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 100.0
KOG1062|consensus 866 100.0
COG5096757 Vesicle coat complex, various subunits [Intracellu 100.0
KOG1059|consensus 877 100.0
KOG1058|consensus 948 100.0
KOG1078|consensus 865 100.0
COG5240 898 SEC21 Vesicle coat complex COPI, gamma subunit [In 99.97
PF14796145 AP3B1_C: Clathrin-adaptor complex-3 beta-1 subunit 99.78
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 99.54
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 99.16
PTZ00429 746 beta-adaptin; Provisional 99.14
PRK09687280 putative lyase; Provisional 99.12
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 98.99
KOG1058|consensus 948 98.93
PRK09687280 putative lyase; Provisional 98.92
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 98.76
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 98.71
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 98.63
KOG1059|consensus 877 98.59
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 98.5
KOG2023|consensus885 98.42
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 98.41
KOG2171|consensus 1075 98.39
KOG0212|consensus675 98.35
KOG2171|consensus 1075 98.32
KOG2023|consensus 885 98.3
KOG1060|consensus 968 98.26
KOG1062|consensus 866 98.1
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 98.03
KOG0166|consensus514 98.0
KOG0212|consensus675 97.99
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 97.9
KOG1241|consensus859 97.89
KOG1242|consensus569 97.8
smart00809104 Alpha_adaptinC2 Adaptin C-terminal domain. Adaptin 97.79
COG1413335 FOG: HEAT repeat [Energy production and conversion 97.72
COG5240 898 SEC21 Vesicle coat complex COPI, gamma subunit [In 97.72
KOG1020|consensus 1692 97.67
KOG1078|consensus 865 97.66
PF02883115 Alpha_adaptinC2: Adaptin C-terminal domain; InterP 97.6
PF05804708 KAP: Kinesin-associated protein (KAP) 97.56
COG5215858 KAP95 Karyopherin (importin) beta [Intracellular t 97.55
KOG1824|consensus1233 97.54
KOG1241|consensus859 97.54
KOG2259|consensus823 97.41
KOG0213|consensus1172 97.36
TIGR02270410 conserved hypothetical protein. Members are found 97.36
KOG1061|consensus734 97.31
KOG0213|consensus1172 97.29
KOG0166|consensus514 97.28
TIGR02270410 conserved hypothetical protein. Members are found 97.26
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 97.24
KOG0414|consensus1251 97.16
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 97.15
COG1413335 FOG: HEAT repeat [Energy production and conversion 97.13
cd00256429 VATPase_H VATPase_H, regulatory vacuolar ATP synth 97.12
KOG0414|consensus 1251 97.07
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 97.05
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 96.98
KOG4224|consensus550 96.95
KOG1077|consensus 938 96.87
PF04826254 Arm_2: Armadillo-like; InterPro: IPR006911 This en 96.86
COG50981128 Chromosome condensation complex Condensin, subunit 96.79
PF04826254 Arm_2: Armadillo-like; InterPro: IPR006911 This en 96.73
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 96.69
COG5215858 KAP95 Karyopherin (importin) beta [Intracellular t 96.48
PF05918556 API5: Apoptosis inhibitory protein 5 (API5); Inter 96.38
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 96.24
COG5096 757 Vesicle coat complex, various subunits [Intracellu 96.18
KOG2259|consensus823 96.17
COG5098 1128 Chromosome condensation complex Condensin, subunit 96.14
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 96.13
PF0298531 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re 96.1
KOG1824|consensus1233 96.1
KOG1240|consensus 1431 95.62
smart00638574 LPD_N Lipoprotein N-terminal Domain. 95.47
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 95.21
KOG1240|consensus 1431 94.6
COG5181975 HSH155 U2 snRNP spliceosome subunit [RNA processin 94.58
KOG0567|consensus289 94.55
PF08713213 DNA_alkylation: DNA alkylation repair enzyme; Inte 94.52
PF1036392 DUF2435: Protein of unknown function (DUF2435) 94.06
COG5064526 SRP1 Karyopherin (importin) alpha [Intracellular t 93.85
smart00638574 LPD_N Lipoprotein N-terminal Domain. 93.71
KOG1517|consensus 1387 93.28
PF1036392 DUF2435: Protein of unknown function (DUF2435) 93.22
PF12830187 Nipped-B_C: Sister chromatid cohesion C-terminus 92.99
KOG4224|consensus550 92.83
COG1470513 Predicted membrane protein [Function unknown] 92.82
KOG0915|consensus1702 92.8
PF12719298 Cnd3: Nuclear condensing complex subunits, C-term 92.48
PF01347618 Vitellogenin_N: Lipoprotein amino terminal region; 92.25
COG5064526 SRP1 Karyopherin (importin) alpha [Intracellular t 92.17
PF12460415 MMS19_C: RNAPII transcription regulator C-terminal 91.79
PF05804708 KAP: Kinesin-associated protein (KAP) 91.69
KOG0413|consensus 1529 91.68
PF05918556 API5: Apoptosis inhibitory protein 5 (API5); Inter 91.59
PF1063378 NPCBM_assoc: NPCBM-associated, NEW3 domain of alph 91.5
KOG2025|consensus 892 91.33
KOG1949|consensus 1005 91.29
KOG1525|consensus 1266 91.28
PF12719298 Cnd3: Nuclear condensing complex subunits, C-term 91.24
COG5181975 HSH155 U2 snRNP spliceosome subunit [RNA processin 91.18
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 91.14
KOG1949|consensus 1005 90.8
KOG1020|consensus 1692 90.8
KOG1822|consensus 2067 90.58
KOG2956|consensus516 90.54
KOG0915|consensus 1702 90.45
KOG1242|consensus569 89.66
PF14664371 RICTOR_N: Rapamycin-insensitive companion of mTOR, 88.73
KOG2062|consensus929 88.6
KOG2062|consensus929 88.17
KOG2140|consensus 739 87.9
KOG2274|consensus1005 87.4
PF08713213 DNA_alkylation: DNA alkylation repair enzyme; Inte 86.49
PF01347618 Vitellogenin_N: Lipoprotein amino terminal region; 86.4
PF0298531 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re 85.76
cd06561197 AlkD_like A new structural DNA glycosylase. This d 85.62
KOG0211|consensus759 85.49
COG5116926 RPN2 26S proteasome regulatory complex component [ 85.35
KOG1991|consensus 1010 85.18
PF08167165 RIX1: rRNA processing/ribosome biogenesis 84.77
KOG2759|consensus442 84.57
KOG2160|consensus342 83.7
KOG1248|consensus1176 81.56
KOG0567|consensus289 81.4
PF03224312 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 81.31
PF14664371 RICTOR_N: Rapamycin-insensitive companion of mTOR, 81.13
cd03568144 VHS_STAM VHS domain family, STAM subfamily; member 80.93
COG5116926 RPN2 26S proteasome regulatory complex component [ 80.08
>KOG1060|consensus Back     alignment and domain information 
Probab=100.00  E-value=7.4e-124  Score=1010.49  Aligned_cols=611  Identities=59%  Similarity=0.895  Sum_probs=570.1

Q ss_pred             hHHHHHHHHhCCCCcccchHHHHHHhccCCchhHHHHHHHHHHhcccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHhC
Q psy8267           2 AKGTCCYMMAKGRDASDLFPAVVKNVVSKNIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDPNQLIRASALRVLSS   81 (645)
Q Consensus         2 alkkli~l~~~G~dvs~lf~~vvkli~s~~~~~KkL~Yl~l~~~~~~~~dl~lL~iNsl~kDL~~~N~~iralALr~ls~   81 (645)
                      ||||||++|++|+|+|.+||+|||+++|+|.++|||+|+||.+||+++||+++|+||||||+|+||||++||.|||+|++
T Consensus        55 AmKRIia~iA~G~dvS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALLSIntfQk~L~DpN~LiRasALRvlSs  134 (968)
T KOG1060|consen   55 AMKRIIALIAKGKDVSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALLSINTFQKALKDPNQLIRASALRVLSS  134 (968)
T ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceeeeHHHHHhhhcCCcHHHHHHHHHHHHh
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccccHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCchhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHChhhhhh
Q psy8267          82 IRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKEELVLVIEKLLQDKTTLVVGSAVMAFEEVCPERIDM  161 (645)
Q Consensus        82 I~~~ei~~~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~~~~~~~~l~~lL~D~~~~V~~sav~~l~ei~~~~~~l  161 (645)
                      ||.+.++|+++.+|++|..|++|||||+||+||.|+|+++|+..+++.+.|++||.|.+|.|+++|++||.|+||++.++
T Consensus       135 IRvp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL~e~I~~LLaD~splVvgsAv~AF~evCPerldL  214 (968)
T KOG1060|consen  135 IRVPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQLEEVIKKLLADRSPLVVGSAVMAFEEVCPERLDL  214 (968)
T ss_pred             cchhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHHHHHHHHHhcCCCCcchhHHHHHHHHhchhHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcCCccccccccccccccccc
Q psy8267         162 IHKSYRKLCNLLVDVDEWGQVFILNMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNETSQVSTEL  241 (645)
Q Consensus       162 i~~~~~kL~~~L~~~~~W~Qv~iL~lL~~y~r~~~~~P~~~~~~s~~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~~  241 (645)
                      ||++|||||++|.|.++|+|+.+|++|.||+|.+|++|+..++......   +.++++.-|          ...+.+|.+
T Consensus       215 IHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~---~~~~~~~~~----------~~~~~P~~~  281 (968)
T KOG1060|consen  215 IHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNG---RSCNLKDKY----------NEIRTPYVN  281 (968)
T ss_pred             hhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCc---ccccccccc----------cccCCCccc
Confidence            9999999999999999999999999999999999999976433111100   111111111          123567899


Q ss_pred             ChhHHHHHHhhhhhhcCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhhcccchhhhhc
Q psy8267         242 DPDHRLLLKNAKPLLQSRNAAVVMAVAQLFHHLAPRREVAIIAKALVRLLRSSREVQTVVLTTIASLAVKRRALFVPYLK  321 (645)
Q Consensus       242 d~d~~~ll~~~~~ll~s~n~aVv~ea~~~i~~l~~~~~~~~~~~~L~~lL~s~~niryv~L~~l~~l~~~~p~~~~~~~~  321 (645)
                      |+|++++|+++.|++||+|++|+|+|+++++|++|......++++|+++|++++++||++|++|..|+.++|.+|+||++
T Consensus       282 d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~~~~~i~kaLvrLLrs~~~vqyvvL~nIa~~s~~~~~lF~P~lK  361 (968)
T KOG1060|consen  282 DPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKNQVTKIAKALVRLLRSNREVQYVVLQNIATISIKRPTLFEPHLK  361 (968)
T ss_pred             CccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHhcchhhhhhhhh
Confidence            99999999999999999999999999999999999888999999999999999999999999999999999999999999


Q ss_pred             eEEEcCCCChHHHHHHHHHHHHccCcCCHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccccHHHHHHHHHHhhccC
Q psy8267         322 SFYVRSSDPTHVKTLKLELLTTLASETSIASILREFQTYISSVDKAFVAATVQAIGKCAANIAQVTDTCLTGLVSLLSYS  401 (645)
Q Consensus       322 ~f~~l~~d~~~Ir~~kLdlL~~L~~~~Nv~~Il~EL~~yl~~~d~~~~~~~i~~I~~la~k~~~~~~~~v~~ll~LL~~~  401 (645)
                      +||++..||+.||..||++|..|+|++|+..|++||++|+.+.|.+|+..+|++||+||.+.-.+.+.|+++|++|+++.
T Consensus       362 sFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~sv~~tCL~gLv~Llssh  441 (968)
T KOG1060|consen  362 SFFVRSSDPTQVKILKLEILSNLANESNISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIGSVTDTCLNGLVQLLSSH  441 (968)
T ss_pred             ceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHhhcCCcchHHHHHHHHHhhccCChHHHHHHHHHHHhcccccCCCchHHHHHHHHHhhcCCchHHH
Q psy8267         402 DEAVVAESVVVIKNLLQTQPEAYTDIIRHMVRLSDSITVPTARAAILWLLGEYSHLVPALGPDVLRKAAITFVNEEDIVK  481 (645)
Q Consensus       402 ~~~v~~e~v~~i~~il~~~p~~~~~~i~~L~~~l~~i~~~~ak~~~iwilGEy~~~i~~~~~diLr~l~~~f~~e~~~vk  481 (645)
                      +..|+.|+|.+|+.+++++|..|.+++.+|++.++.+..|.||++++|++|||+..++.++||+||+++|+|.+|.++||
T Consensus       442 de~Vv~eaV~vIk~Llq~~p~~h~~ii~~La~lldti~vp~ARA~IiWLige~~e~vpri~PDVLR~laksFs~E~~evK  521 (968)
T KOG1060|consen  442 DELVVAEAVVVIKRLLQKDPAEHLEILFQLARLLDTILVPAARAGIIWLIGEYCEIVPRIAPDVLRKLAKSFSDEGDEVK  521 (968)
T ss_pred             cchhHHHHHHHHHHHHhhChHHHHHHHHHHHHHhhhhhhhhhhceeeeeehhhhhhcchhchHHHHHHHHhhccccchhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhh------------------------------------------------------------------------
Q psy8267         482 LQVLNLAP------------------------------------------------------------------------  489 (645)
Q Consensus       482 ~~iL~~~~------------------------------------------------------------------------  489 (645)
                      +|||++++                                                                        
T Consensus       522 lQILnL~aKLyl~~~~~~kll~~Yv~~L~~yD~sYDiRDRaRF~r~l~~~~~~Ls~h~~ei~l~~Kpa~~~es~f~~~~~  601 (968)
T KOG1060|consen  522 LQILNLSAKLYLTNIDQTKLLVQYVFELARYDLSYDIRDRARFLRQLISPLEALSKHAREIFLASKPAPVLESSFKDRHY  601 (968)
T ss_pred             HHHHHhhhhheEechhhHHHHHHHHHHHhccCCCcchhHHHHHHHHHhccHHHHHHHHHHHhhccCCCccCcccccCCCc
Confidence            99999999                                                                        


Q ss_pred             ----------hhcccCCCCCC-----------------------------------------------------------
Q psy8267         490 ----------VEAAGITTLPP-----------------------------------------------------------  500 (645)
Q Consensus       490 ----------~~a~~y~~l~~-----------------------------------------------------------  500 (645)
                                ..|.||.+||+                                                           
T Consensus       602 ~~gslS~lLn~~a~GY~~lp~~~~~~~d~~~~~~~a~~~~~~~e~~e~~~~~~~s~~~ses~~~~~~~~e~ge~~dsn~~  681 (968)
T KOG1060|consen  602 QLGSLSLLLNAPAPGYEPLPNWPAVAPDPFPDSERAKLLDSDSEEEETGDDESWSDPESESGESSNFSREGGEENDSNEE  681 (968)
T ss_pred             ccchHHHHhcCcCcCCccCCCccccCCCCCcchhhcccccCCccccccccccCCCCCccccccCCccccccccccccccc
Confidence                      15788888774                                                           


Q ss_pred             --------------------------------------------------------C--CC----C--------------
Q psy8267         501 --------------------------------------------------------A--FT----S--------------  504 (645)
Q Consensus       501 --------------------------------------------------------~--v~----~--------------  504 (645)
                                                                              +  ++    +              
T Consensus       682 ~~~~~d~sdqss~~~ss~~d~~s~se~e~e~~~e~~k~~pet~~~sl~l~d~~~~n~~P~~~~~~~~~l~~d~~~~~~~~  761 (968)
T KOG1060|consen  682 KDSEDDFSDQSSYEESSAEDSESSSEAESEPTPEKLKEKPETKDVSLDLNDFTPQNGKPVLPERNDPDLAADDEFFSLTG  761 (968)
T ss_pred             ccccccccccchhccccccccccccccccccCCCccCCCcccccccccccccCCCCCCCCCCCCCChhhhcccccccccc
Confidence                                                                    0  00    0              


Q ss_pred             ---------CcH-----HHHHHHHhCCCCcceeeEeecccccccCCCceEEEEEEeeCCCCCccceEeeeCCCCCCCCcc
Q psy8267         505 ---------PRY-----TEVLNKIGGGRGMLSALASFSRAPCLASPRMISVTLRLTNHHGAPLSRVRIDSEGSSLGHGMS  570 (645)
Q Consensus       505 ---------p~~-----~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~N~~~~~~~~~~~~~~~~~~~~~~~  570 (645)
                               |.+     .++|+++.|. | +.+.|+|+|.+     . .++.+.|+|+++.++.++++     +.|.||+
T Consensus       762 s~~~~~~~~p~~i~~~~~ell~~~~g~-g-l~~~y~f~r~~-----~-~~i~~~~~n~~~~~~~~~~l-----~~p~gm~  828 (968)
T KOG1060|consen  762 SRNSKPLKIPTHIEEKSIELLNEVEGS-G-LDLEYSFSRLP-----D-VSISLHFTNKSDLELLGIHL-----KLPAGMS  828 (968)
T ss_pred             ccccccccCCccCcchhHhhhhhcccC-C-cceeeeccCCC-----C-eeEEEecccCCCccccccee-----ecccccc
Confidence                     221     7888888888 8 88999999965     2 78999999999999999999     4468999


Q ss_pred             cccCCCCcccCCCCceEEEEeEEecCCCCCCccEEeecccCCCCCccceEeeCCcccccccccCChHHHHhhhcC
Q psy8267         571 MQPFPEIASIDPGLAVEVSLGLNLNDSTQPLSPRLVWGVEGEDGLSAPLKLSAPVGEWLRAVTMSTALFDAEKGN  645 (645)
Q Consensus       571 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~pv~~~~~~~~~~~~~f~~~~~~  645 (645)
                      +++|+.+.+++||++.++.++|+|+|+|+.++|++|    +++|   .+++++||||+++|+.|++.+|.+||||
T Consensus       829 i~ef~~i~s~~pg~~~~~~~~i~F~dst~~~~~~l~----~~~g---~~~~~~pvge~~~~v~~~~~~~~~E~~~  896 (968)
T KOG1060|consen  829 IKEFSPIESLPPGASASVVLGIDFCDSTQAAEWQLL----TDDG---RVRFQPPVGELVQPVRMSEEDFKKERGK  896 (968)
T ss_pred             ccccccccccCCCcceeeeeeeeccccccceeEEEE----eccC---cEEecCchhhhhccccCCHHHHHhhhhh
Confidence            999999999999999999999999999999999999    5676   9999999999999999999999999986

>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>KOG1077|consensus Back     alignment and domain information
>KOG1061|consensus Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG1062|consensus Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1059|consensus Back     alignment and domain information
>KOG1058|consensus Back     alignment and domain information
>KOG1078|consensus Back     alignment and domain information
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>PF14796 AP3B1_C: Clathrin-adaptor complex-3 beta-1 subunit C-terminal Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>KOG1058|consensus Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>KOG1059|consensus Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>KOG2023|consensus Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>KOG2171|consensus Back     alignment and domain information
>KOG0212|consensus Back     alignment and domain information
>KOG2171|consensus Back     alignment and domain information
>KOG2023|consensus Back     alignment and domain information
>KOG1060|consensus Back     alignment and domain information
>KOG1062|consensus Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>KOG0166|consensus Back     alignment and domain information
>KOG0212|consensus Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>KOG1241|consensus Back     alignment and domain information
>KOG1242|consensus Back     alignment and domain information
>smart00809 Alpha_adaptinC2 Adaptin C-terminal domain Back     alignment and domain information
>COG1413 FOG: HEAT repeat [Energy production and conversion] Back     alignment and domain information
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1020|consensus Back     alignment and domain information
>KOG1078|consensus Back     alignment and domain information
>PF02883 Alpha_adaptinC2: Adaptin C-terminal domain; InterPro: IPR008152 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PF05804 KAP: Kinesin-associated protein (KAP) Back     alignment and domain information
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1824|consensus Back     alignment and domain information
>KOG1241|consensus Back     alignment and domain information
>KOG2259|consensus Back     alignment and domain information
>KOG0213|consensus Back     alignment and domain information
>TIGR02270 conserved hypothetical protein Back     alignment and domain information
>KOG1061|consensus Back     alignment and domain information
>KOG0213|consensus Back     alignment and domain information
>KOG0166|consensus Back     alignment and domain information
>TIGR02270 conserved hypothetical protein Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>KOG0414|consensus Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>COG1413 FOG: HEAT repeat [Energy production and conversion] Back     alignment and domain information
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments Back     alignment and domain information
>KOG0414|consensus Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>KOG4224|consensus Back     alignment and domain information
>KOG1077|consensus Back     alignment and domain information
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function Back     alignment and domain information
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG2259|consensus Back     alignment and domain information
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] Back     alignment and domain information
>KOG1824|consensus Back     alignment and domain information
>KOG1240|consensus Back     alignment and domain information
>smart00638 LPD_N Lipoprotein N-terminal Domain Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>KOG1240|consensus Back     alignment and domain information
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>KOG0567|consensus Back     alignment and domain information
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes Back     alignment and domain information
>PF10363 DUF2435: Protein of unknown function (DUF2435) Back     alignment and domain information
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] Back     alignment and domain information
>smart00638 LPD_N Lipoprotein N-terminal Domain Back     alignment and domain information
>KOG1517|consensus Back     alignment and domain information
>PF10363 DUF2435: Protein of unknown function (DUF2435) Back     alignment and domain information
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus Back     alignment and domain information
>KOG4224|consensus Back     alignment and domain information
>COG1470 Predicted membrane protein [Function unknown] Back     alignment and domain information
>KOG0915|consensus Back     alignment and domain information
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain Back     alignment and domain information
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 [] Back     alignment and domain information
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] Back     alignment and domain information
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins Back     alignment and domain information
>PF05804 KAP: Kinesin-associated protein (KAP) Back     alignment and domain information
>KOG0413|consensus Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known Back     alignment and domain information
>KOG2025|consensus Back     alignment and domain information
>KOG1949|consensus Back     alignment and domain information
>KOG1525|consensus Back     alignment and domain information
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain Back     alignment and domain information
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>KOG1949|consensus Back     alignment and domain information
>KOG1020|consensus Back     alignment and domain information
>KOG1822|consensus Back     alignment and domain information
>KOG2956|consensus Back     alignment and domain information
>KOG0915|consensus Back     alignment and domain information
>KOG1242|consensus Back     alignment and domain information
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term Back     alignment and domain information
>KOG2062|consensus Back     alignment and domain information
>KOG2062|consensus Back     alignment and domain information
>KOG2140|consensus Back     alignment and domain information
>KOG2274|consensus Back     alignment and domain information
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes Back     alignment and domain information
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 [] Back     alignment and domain information
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] Back     alignment and domain information
>cd06561 AlkD_like A new structural DNA glycosylase Back     alignment and domain information
>KOG0211|consensus Back     alignment and domain information
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1991|consensus Back     alignment and domain information
>PF08167 RIX1: rRNA processing/ribosome biogenesis Back     alignment and domain information
>KOG2759|consensus Back     alignment and domain information
>KOG2160|consensus Back     alignment and domain information
>KOG1248|consensus Back     alignment and domain information
>KOG0567|consensus Back     alignment and domain information
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term Back     alignment and domain information
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein) Back     alignment and domain information
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query645
2vgl_B591 Ap2 Clathrin Adaptor Core Length = 591 1e-47
2xa7_B592 Ap2 Clathrin Adaptor Core In Active Complex With Ca 1e-47
1w63_B584 Ap1 Clathrin Adaptor Core Length = 584 9e-44
>pdb|2VGL|B Chain B, Ap2 Clathrin Adaptor Core Length = 591 Back     alignment and structure 
Iteration: 1

 Score =  188 bits (477), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 131/463 (28%), Positives = 207/463 (44%), Gaps = 62/463 (13%)
Query: 10  MAKGRDASDLFPAVVKNVVSKNIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDPNQ 69
           M  G+D S LFP VV  + + N+E+KKLVY+YL  YA+ Q D+A++++++F +  +DPN 
Sbjct: 41  MTVGKDVSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNSFVKDCEDPNP 100
Query: 70  LIRASALRVLSSIRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPXXXXXX- 128
           LIRA A+R +  IRV  I   +   ++    D  PYVRKTAA  + KL+ ++        
Sbjct: 101 LIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQG 160
Query: 129 -XXXXXXXXXDKTTLVVGSAVMAFEEVCPER-----IDMIHKSYRKLCNLLVDVDEWGQV 182
                     D   +VV +AV A  E+         +D+  ++  KL   L +  EWGQ+
Sbjct: 161 FLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQI 220
Query: 183 FILNMLTRYARTQFTXXXXXXXXXXXXXXXXXXXXXXXFYDDETTRDTKNETSQVSTELD 242
           FIL+ L+ Y                                    +D +   S       
Sbjct: 221 FILDCLSNY----------------------------------NPKDDREAQS------- 239
Query: 243 PDHRLLLKNAKPLLQSRNAAVVMAVAQL---FHHLAPRRE------VAIIAKALVRLLRS 293
                + +   P L   N+AVV++  ++   F  L P+        +  +A  LV LL  
Sbjct: 240 -----ICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLLSG 294
Query: 294 SREVQTVVLTTIASLAVKRRALFVPYLKSFYVRSSDPTHVXXXXXXXXXXXXXXXXXXXX 353
             EVQ V L  I  +  KR  +    +K F+V+ +DP +V                    
Sbjct: 295 EPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQV 354
Query: 354 LREFQTYISSVDKAFVAATVQAIGKCAANIAQVTDTCLTGLVSLLSYXXXXXXXXXXXXI 413
           L E + Y + VD  FV   V+AIG+CA  + Q  + C++ L+ L+              I
Sbjct: 355 LAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKVNYVVQEAIVVI 414
Query: 414 KNLLQTQPEAYTDIIRHMVRLSDSITVPTARAAILWLLGEYSH 456
           +++ +  P  Y  II  +    DS+  P ARAA++W++GEY+ 
Sbjct: 415 RDIFRKYPNKYESIIATLCENLDSLDEPDARAAMIWIVGEYAE 457
>pdb|2XA7|B Chain B, Ap2 Clathrin Adaptor Core In Active Complex With Cargo Peptides Length = 592 Back     alignment and structure
>pdb|1W63|B Chain B, Ap1 Clathrin Adaptor Core Length = 584 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query645
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 1e-139
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 1e-72
2vgl_A621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 3e-57
3tjz_B355 Coatomer subunit gamma; protein trafficking, golgi 5e-33
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 8e-08
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 4e-06
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 5e-07
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 1e-06
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 2e-06
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 3e-04
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 2e-06
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 5e-05
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 3e-06
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 5e-06
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 7e-05
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 8e-05
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 4e-06
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 2e-04
2db0_A253 253AA long hypothetical protein; heat repeats, hel 7e-06
2db0_A253 253AA long hypothetical protein; heat repeats, hel 1e-04
2db0_A253 253AA long hypothetical protein; heat repeats, hel 7e-04
3u0r_A507 Apoptosis inhibitor 5; heat repeat, armadillo repe 4e-05
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 1e-04
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Length = 591 Back     alignment and structure
 Score =  418 bits (1076), Expect = e-139
 Identities = 147/497 (29%), Positives = 242/497 (48%), Gaps = 63/497 (12%)

Query: 8   YMMAKGRDASDLFPAVVKNVVSKNIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDP 67
             M  G+D S LFP VV  + + N+E+KKLVY+YL  YA+ Q D+A++++++F +  +DP
Sbjct: 39  AAMTVGKDVSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNSFVKDCEDP 98

Query: 68  NQLIRASALRVLSSIRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPE--QK 125
           N LIRA A+R +  IRV  I   +   ++    D  PYVRKTAA  + KL+ ++ +  + 
Sbjct: 99  NPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVED 158

Query: 126 EELVLVIEKLLQDKTTLVVGSAVMAFEEVCPER-----IDMIHKSYRKLCNLLVDVDEWG 180
           +  +  +  L+ D   +VV +AV A  E+         +D+  ++  KL   L +  EWG
Sbjct: 159 QGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWG 218

Query: 181 QVFILNMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNETSQVSTE 240
           Q+FIL+ L+ Y                                                 
Sbjct: 219 QIFILDCLSNYNPKD--------------------------------------------- 233

Query: 241 LDPDHRLLLKNAKPLLQSRNAAVVMAVAQLFHHLAP---------RREVAIIAKALVRLL 291
            D + + + +   P L   N+AVV++  ++                  +  +A  LV LL
Sbjct: 234 -DREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLL 292

Query: 292 RSSREVQTVVLTTIASLAVKRRALFVPYLKSFYVRSSDPTHVKTLKLELLTTLASETSIA 351
               EVQ V L  I  +  KR  +    +K F+V+ +DP +VK  KL+++  LAS+ +IA
Sbjct: 293 SGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIA 352

Query: 352 SILREFQTYISSVDKAFVAATVQAIGKCAANIAQVTDTCLTGLVSLLSYSDEAVVAESVV 411
            +L E + Y + VD  FV   V+AIG+CA  + Q  + C++ L+ L+      VV E++V
Sbjct: 353 QVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKVNYVVQEAIV 412

Query: 412 VIKNLLQTQPEAYTDIIRHMVRLSDSITVPTARAAILWLLGEYSHLVPALGPDVLRKAAI 471
           VI+++ +  P  Y  II  +    DS+  P ARAA++W++GEY+  +     ++L     
Sbjct: 413 VIRDIFRKYPNKYESIIATLCENLDSLDEPDARAAMIWIVGEYAERIDN-ADELLESFLE 471

Query: 472 TFVNEEDIVKLQVLNLA 488
            F +E   V+L +L   
Sbjct: 472 GFHDESTQVQLTLLTAI 488
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Length = 618 Back     alignment and structure
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Length = 621 Back     alignment and structure
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Length = 355 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131 Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131 Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 Back     alignment and structure
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A Length = 507 Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query645
2vgl_A621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 100.0
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 100.0
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 100.0
3tjz_B355 Coatomer subunit gamma; protein trafficking, golgi 100.0
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 99.65
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 99.57
4fdd_A 852 Transportin-1; heat repeats, karyopherin, nuclear 99.54
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 99.51
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 99.47
4fdd_A 852 Transportin-1; heat repeats, karyopherin, nuclear 99.45
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 99.4
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 99.33
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 99.32
2bpt_A 861 Importin beta-1 subunit; nuclear transport, nucleo 99.32
1qgr_A876 Protein (importin beta subunit); transport recepto 99.32
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 99.3
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 99.3
1qgr_A876 Protein (importin beta subunit); transport recepto 99.3
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 99.29
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 99.29
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 99.29
2bpt_A 861 Importin beta-1 subunit; nuclear transport, nucleo 99.28
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 99.27
2vgl_A621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 99.25
3hs8_A273 Adaptor protein complex AP-2, alpha 2 subunit; ada 99.24
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 99.22
1kyf_A247 Alpha-adaptin C; protein-peptide complex, endocyto 99.19
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 99.14
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 99.12
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 99.11
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 99.09
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 99.08
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 99.06
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 99.04
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 99.02
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 99.01
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 99.0
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 99.0
3tjz_B355 Coatomer subunit gamma; protein trafficking, golgi 99.0
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 98.95
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 98.88
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 98.87
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 98.85
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 98.84
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 98.84
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 98.82
2g30_A258 AP-2 complex subunit beta-1; alpha-helical ARH pep 98.8
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 98.74
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 98.6
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 98.55
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 98.55
1wa5_C 960 Importin alpha RE-exporter; nuclear transport/comp 98.39
3b2a_A265 TON_1937, putative uncharacterized protein; heat-r 98.37
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 98.35
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 98.35
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 98.3
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 98.3
3l6x_A584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 98.22
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 98.21
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 98.15
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 98.13
3l6x_A584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 98.02
2db0_A253 253AA long hypothetical protein; heat repeats, hel 98.01
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 97.93
3opb_A778 SWI5-dependent HO expression protein 4; heat and a 97.92
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 97.91
4ady_A963 RPN2, 26S proteasome regulatory subunit RPN2; prot 97.89
3nmz_A458 APC variant protein; protein-protein complex, arma 97.87
1wa5_C960 Importin alpha RE-exporter; nuclear transport/comp 97.82
3opb_A778 SWI5-dependent HO expression protein 4; heat and a 97.79
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 97.76
2x19_B 963 Importin-13; nuclear transport, protein transport; 97.73
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 97.58
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 97.54
2x1g_F 971 Cadmus; transport protein, developmental protein, 97.51
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 97.4
3nmz_A458 APC variant protein; protein-protein complex, arma 97.33
2db0_A253 253AA long hypothetical protein; heat repeats, hel 97.31
4ady_A963 RPN2, 26S proteasome regulatory subunit RPN2; prot 97.24
3b2a_A265 TON_1937, putative uncharacterized protein; heat-r 96.91
3m1i_C 1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 96.91
2x1g_F971 Cadmus; transport protein, developmental protein, 96.87
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 96.63
3a6p_A 1204 Exportin-5; exportin-5, RANGTP, nuclearexport, imp 96.54
2x19_B963 Importin-13; nuclear transport, protein transport; 96.49
3gs3_A257 Symplekin, LD45768P; helix-turn-helix heat repeat 96.48
3mnm_A123 ADP-ribosylation factor-binding protein GGA2; IG-l 96.39
3zy7_A122 AP-1 complex subunit gamma-1; endocytosis, protein 96.37
3o2t_A386 Symplekin; heat repeat, scaffold, protein binding; 96.26
4ffb_C278 Protein STU2; tubulin fold, heat repeats, cytoskel 96.12
3ibv_A980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 95.91
3m1i_C1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 95.89
1gyu_A140 Adapter-related protein complex 1 gamma 1 subunit; 95.77
1iu1_A146 Gamma1-adaptin; coated PITS, endocytosis; 1.80A {H 95.66
4hat_C1023 Exportin-1; heat repeat, nuclear export, RAN-ranbp 95.52
3grl_A651 General vesicular transport factor P115; vesicle t 95.42
4ffb_C278 Protein STU2; tubulin fold, heat repeats, cytoskel 95.41
2e9g_A131 AP-1 complex subunit gamma-2; beta-sandwich, immun 95.23
1lrv_A244 LRV, leucine-rich repeat variant; leucine-rich rep 95.21
3l9t_A240 Putative uncharacterized protein SMU.31; hypotheti 95.19
3ibv_A 980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 94.47
1lsh_A1056 Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro 94.4
1p4u_A153 ADP-ribosylation factor binding protein GGA3; prot 94.39
2iw3_A 986 Elongation factor 3A; acetylation, ATP-binding, pr 93.71
3u0r_A 507 Apoptosis inhibitor 5; heat repeat, armadillo repe 93.68
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 93.08
3l9t_A240 Putative uncharacterized protein SMU.31; hypotheti 93.01
2of3_A266 ZYG-9; multifunctional macromolecule, kinetochore, 93.0
3u0r_A507 Apoptosis inhibitor 5; heat repeat, armadillo repe 92.94
3oc3_A800 Helicase MOT1, MOT1; regulation of transcription, 92.56
4hat_C1023 Exportin-1; heat repeat, nuclear export, RAN-ranbp 92.53
2iw3_A 986 Elongation factor 3A; acetylation, ATP-binding, pr 92.29
3grl_A651 General vesicular transport factor P115; vesicle t 92.09
2of3_A266 ZYG-9; multifunctional macromolecule, kinetochore, 91.72
3gjx_A1073 Exportin-1; transport, cytoplasm, nucleus, RNA-bin 90.77
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 90.32
1ho8_A480 Vacuolar ATP synthase subunit H; heat repeat, hydr 88.84
1lsh_A 1056 Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro 88.54
3gs3_A257 Symplekin, LD45768P; helix-turn-helix heat repeat 87.66
2b6c_A220 Hypothetical protein EF3068; structural genomis, D 86.93
3ldz_A140 STAM-1, signal transducing adapter molecule 1; ubi 84.76
1vsy_5997 Proteasome activator BLM10; 20S proteasome BLM10, 83.65
4gmo_A684 Putative uncharacterized protein; ARM, heat, solen 81.7
3a6p_A 1204 Exportin-5; exportin-5, RANGTP, nuclearexport, imp 80.35
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Back     alignment and structure
Probab=100.00  E-value=6.7e-78  Score=690.36  Aligned_cols=478  Identities=15%  Similarity=0.192  Sum_probs=409.1

Q ss_pred             hHHHHHHHHhCCCCcccchHHHHHHhccCCchhHHHHHHHHHHhcccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHhC
Q psy8267           2 AKGTCCYMMAKGRDASDLFPAVVKNVVSKNIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDPNQLIRASALRVLSS   81 (645)
Q Consensus         2 alkkli~l~~~G~dvs~lf~~vvkli~s~~~~~KkL~Yl~l~~~~~~~~dl~lL~iNsl~kDL~~~N~~iralALr~ls~   81 (645)
                      |++|+|++|++|+|++++|++|+++++|+|+++||+||+|+..|+++++|+++|+||+|+|||+|+||++||+|||+||+
T Consensus        58 ~l~Kli~l~~~G~d~s~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~  137 (621)
T 2vgl_A           58 YVCKLLFIFLLGHDIDFGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRLINNAIKNDLASRNPTFMGLALHCIAN  137 (621)
T ss_dssp             HHHHHHHHHHHSCCCCSCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCchhHHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhc
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccccHHHHHHHHHhhc--CCCChHHHHHHHHHHHHHhhcCchhHH--HHHHHHHHhhcCCChhHHHHHHHHHHHHChh
Q psy8267          82 IRVPMIIPIVMLAIKDSS--LDMSPYVRKTAAHAIPKLYSLDPEQKE--ELVLVIEKLLQDKTTLVVGSAVMAFEEVCPE  157 (645)
Q Consensus        82 I~~~ei~~~l~~~I~~~l--~d~~pyVRK~Aalal~kl~~~~p~~~~--~~~~~l~~lL~D~~~~V~~sav~~l~ei~~~  157 (645)
                      |+.+++++.+.++|++++  .|++|||||+|++|+.|+|+++|+.++  +|.+.+.++|+|+|++|+.+|+.++.+++++
T Consensus       138 i~~~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~  217 (621)
T 2vgl_A          138 VGSREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQK  217 (621)
T ss_dssp             HCCHHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHh
Confidence            999999999999999999  999999999999999999999999987  8999999999999999999999999999987


Q ss_pred             hhh----hhHHHHHHHHHHhcC--C-----------CchhHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCC
Q psy8267         158 RID----MIHKSYRKLCNLLVD--V-----------DEWGQVFILNMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKP  220 (645)
Q Consensus       158 ~~~----li~~~~~kL~~~L~~--~-----------~~W~Qv~iL~lL~~y~r~~~~~P~~~~~~s~~~~~~l~~~~~~~  220 (645)
                      +++    ++++.++.|.+.+..  +           +||+|+++|++|..|++      .. +.       ..       
T Consensus       218 ~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~------~~-d~-------~~-------  276 (621)
T 2vgl_A          218 NPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPP------PE-DP-------AV-------  276 (621)
T ss_dssp             CHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSS------CS-SH-------HH-------
T ss_pred             ChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCC------CC-CH-------HH-------
Confidence            653    455566666666542  3           79999999999999873      11 00       00       


Q ss_pred             CcCCcccccccccccccccccChhHHHHHHhhh--h---hhcCCCh--HHHHHHHHHHHhcCChHH-HHHHHHHHHHHhC
Q psy8267         221 FYDDETTRDTKNETSQVSTELDPDHRLLLKNAK--P---LLQSRNA--AVVMAVAQLFHHLAPRRE-VAIIAKALVRLLR  292 (645)
Q Consensus       221 f~~~~~~~~~~~~~~~~~~~~d~d~~~ll~~~~--~---ll~s~n~--aVv~ea~~~i~~l~~~~~-~~~~~~~L~~lL~  292 (645)
                                      ... +...+..+++.+.  +   .++|.|+  ||+|||+++++++++... +..+++.|++||+
T Consensus       277 ----------------~~~-l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~~~~~~L~~~L~  339 (621)
T 2vgl_A          277 ----------------RGR-LTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLVRACNQLGQFLQ  339 (621)
T ss_dssp             ----------------HHH-HHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHSS
T ss_pred             ----------------HHH-HHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhc
Confidence                            000 1112233443321  2   4567776  999999999999987544 6678999999995


Q ss_pred             -CChhHHHHHHHHHHHHHhhcc--cchhhhhceEE-EcC-CCChHHHHHHHHHHHHccCcCCHHHHHHHHHHhhccccHH
Q psy8267         293 -SSREVQTVVLTTIASLAVKRR--ALFVPYLKSFY-VRS-SDPTHVKTLKLELLTTLASETSIASILREFQTYISSVDKA  367 (645)
Q Consensus       293 -s~~niryv~L~~l~~l~~~~p--~~~~~~~~~f~-~l~-~d~~~Ir~~kLdlL~~L~~~~Nv~~Il~EL~~yl~~~d~~  367 (645)
                       +++|+||++|++|.+++..+|  +.+++|...|+ |+. ++|++||++|||+|+.|+|++|++.|++||++|+.+.|.+
T Consensus       340 ~~~~niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~~Nv~~Iv~eL~~yl~~~d~~  419 (621)
T 2vgl_A          340 HRETNLRYLALESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDRSNAQQIVAEMLSYLETADYS  419 (621)
T ss_dssp             CSCHHHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHH
T ss_pred             CCCcchHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcChhhHHHHHHHHHHHHHhcCHH
Confidence             889999999999999999886  68899999887 677 9999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhccccHHHHHHHHHHhhccCChhhHHHHHHHHHHHhhcCCcchHHHHHHHHHhhccCChHH-HHHH
Q psy8267         368 FVAATVQAIGKCAANIAQVTDTCLTGLVSLLSYSDEAVVAESVVVIKNLLQTQPEAYTDIIRHMVRLSDSITVPT-ARAA  446 (645)
Q Consensus       368 ~~~~~i~~I~~la~k~~~~~~~~v~~ll~LL~~~~~~v~~e~v~~i~~il~~~p~~~~~~i~~L~~~l~~i~~~~-ak~~  446 (645)
                      |+++++++||.||+||+++.+||+++++++++.+|+++.+|+|.+++++++++|+.|++++.++++.+++..... ...+
T Consensus       420 ~~~~~v~~I~~la~k~~~~~~~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~~~~~~~~~~~~l~~~l~~~~~~~~li~~  499 (621)
T 2vgl_A          420 IREEIVLKVAILAEKYAVDYTWYVDTILNLIRIAGDYVSEEVWYRVIQIVINRDDVQGYAAKTVFEALQAPACHENLVKV  499 (621)
T ss_dssp             HHHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHGGGSCSHHHHHHHHHHGGGCSCHHHHHHHHHHHHTSSSCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhCChhHHHHHHHHHHHHHcCccchHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999998765332 2334


Q ss_pred             HHHHHhcccccCCC---c-hHHHHHHHHHhhcCCchHHHHHHHHhhh-------------------------------hh
Q psy8267         447 ILWLLGEYSHLVPA---L-GPDVLRKAAITFVNEEDIVKLQVLNLAP-------------------------------VE  491 (645)
Q Consensus       447 ~iwilGEy~~~i~~---~-~~diLr~l~~~f~~e~~~vk~~iL~~~~-------------------------------~~  491 (645)
                      ++|++||||+.+++   + +.++++.+.++|..|+++||.++|++++                               +|
T Consensus       500 ~~wilGEy~~~~~~~~~~~p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~~p~~~~~i~~~l~~~~~~~~~d~evrdR  579 (621)
T 2vgl_A          500 GGYILGEFGNLIAGDPRSSPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLFPEVKATIQDVLRSDSQLKNADVELQQR  579 (621)
T ss_dssp             HHHHHHHHTHHHHSSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHSSHHHHSCSSHHHHHH
T ss_pred             HHHHhcchHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence            57999999998876   2 3499999999999999999999999998                               38


Q ss_pred             cccCCCC---C-C----CCCC--CcH----HHHHHHHhCC
Q psy8267         492 AAGITTL---P-P----AFTS--PRY----TEVLNKIGGG  517 (645)
Q Consensus       492 a~~y~~l---~-~----~v~~--p~~----~~ll~~~~~~  517 (645)
                      |++|++|   + +    .+++  |+|    +.||+|++.+
T Consensus       580 A~~y~~Ll~~~~~~~~~~vl~~~P~~~~~~~~ll~~l~~~  619 (621)
T 2vgl_A          580 AVEYLRLSTVASTDILATVLEEMPPFPERESSILAKLKKK  619 (621)
T ss_dssp             HHHHHHHHHSSCSTTTTTTSSSCCCCCCC-----------
T ss_pred             HHHHHHHHccCHHHHHHHHhhcCCCCCCcchHHHHHHHhc
Confidence            8888762   2 1    4555  888    8899999765
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Back     alignment and structure
>3hs8_A Adaptor protein complex AP-2, alpha 2 subunit; adaptor complex AP-2, endocytosis, cell membrane, coated PIT binding, membrane, disease mutation; 1.90A {Mus musculus} Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>1kyf_A Alpha-adaptin C; protein-peptide complex, endocytosis, endocytosis/exocytosis complex; 1.22A {Mus musculus} SCOP: b.1.10.1 d.105.1.1 PDB: 1ky7_A 1kyd_A 1ky6_A 1kyu_A 1qtp_A 1qts_A 2vj0_A 1w80_A 1b9k_A Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>2g30_A AP-2 complex subunit beta-1; alpha-helical ARH peptide, platform domain, sandwich domain, endocytosis, adaptor, endocytosis/exocytosis complex; 1.60A {Homo sapiens} SCOP: b.1.10.1 d.105.1.1 PDB: 1e42_A 3h1z_A 3hs9_A 2iv9_A 2iv8_A Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Back     alignment and structure
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Back     alignment and structure
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Back     alignment and structure
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Back     alignment and structure
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N Back     alignment and structure
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Back     alignment and structure
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster} Back     alignment and structure
>3mnm_A ADP-ribosylation factor-binding protein GGA2; IG-like, beta sandwich, protein transport; HET: MLY; 1.73A {Saccharomyces cerevisiae} Back     alignment and structure
>3zy7_A AP-1 complex subunit gamma-1; endocytosis, protein design, computational design; 1.09A {Mus musculus} PDB: 2a7b_A 1gyv_A 1gyw_A Back     alignment and structure
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A* Back     alignment and structure
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Back     alignment and structure
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Back     alignment and structure
>1gyu_A Adapter-related protein complex 1 gamma 1 subunit; clathrin, golgi, adaptin, endocytosis, adaptor; 1.81A {Mus musculus} SCOP: b.1.10.2 Back     alignment and structure
>1iu1_A Gamma1-adaptin; coated PITS, endocytosis; 1.80A {Homo sapiens} SCOP: b.1.10.2 Back     alignment and structure
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B Back     alignment and structure
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Back     alignment and structure
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Back     alignment and structure
>2e9g_A AP-1 complex subunit gamma-2; beta-sandwich, immunoglobulin-like fold, adaptin, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 Back     alignment and structure
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} Back     alignment and structure
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Back     alignment and structure
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1 Back     alignment and structure
>1p4u_A ADP-ribosylation factor binding protein GGA3; protein transport; 2.20A {Homo sapiens} SCOP: b.1.10.2 PDB: 1om9_A 1na8_A 2dwy_A 2dwx_A Back     alignment and structure
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Back     alignment and structure
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Back     alignment and structure
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} Back     alignment and structure
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Back     alignment and structure
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A Back     alignment and structure
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} Back     alignment and structure
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B Back     alignment and structure
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Back     alignment and structure
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Back     alignment and structure
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Back     alignment and structure
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Back     alignment and structure
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9 Back     alignment and structure
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1 Back     alignment and structure
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster} Back     alignment and structure
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17 Back     alignment and structure
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0 Back     alignment and structure
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6 Back     alignment and structure
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A Back     alignment and structure
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 645
d2vgla_584 a.118.1.10 (A:) Adaptin alpha C subunit N-terminal 4e-98
d2vglb_579 a.118.1.10 (B:) Adaptin beta subunit N-terminal fr 9e-98
d1oyza_276 a.118.1.16 (A:) Hypothetical protein YibA {Escheri 9e-11
d1b3ua_588 a.118.1.2 (A:) Constant regulatory domain of prote 3e-06
d1u6gc_ 1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 9e-05
d1ibrb_458 a.118.1.1 (B:) Importin beta {Human (Homo sapiens) 0.001
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Length = 276 Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query645
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 100.0
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 100.0
d1b3ua_588 Constant regulatory domain of protein phosphatase 99.5
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 99.45
d1b3ua_588 Constant regulatory domain of protein phosphatase 99.44
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 99.15
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 99.11
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 99.11
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 99.06
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 98.94
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 98.9
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 98.88
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 98.87
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 98.85
d2bpta1 861 Importin beta {Baker's yeast (Saccharomyces cerevi 98.8
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 98.76
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 98.7
d1kyfa1133 Alpha-adaptin AP2 ear domain, N-terminal subdomain 98.69
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 98.63
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 98.61
d1qgra_876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 98.58
d2bpta1861 Importin beta {Baker's yeast (Saccharomyces cerevi 98.57
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 98.53
d1qgra_ 876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 98.33
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 98.33
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 98.29
d1xm9a1457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 98.18
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 98.04
d1e42a1120 Beta2-adaptin AP2 ear domain, N-terminal subdomain 97.77
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 97.27
d1wa5c_ 959 Exportin Cse1p {Baker's yeast (Saccharomyces cerev 97.22
d1xm9a1457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 97.1
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 96.86
d1lsha1336 Lipovitellin-phosvitin complex, superhelical domai 96.52
d1gyva_120 Gamma1-adaptin domain {Human (Homo sapiens) [TaxId 96.32
d1wa5c_959 Exportin Cse1p {Baker's yeast (Saccharomyces cerev 96.25
d1p4ua_145 ADP-ribosylation factor binding protein Gga3 domai 96.09
d2dwya1129 ADP-ribosylation factor binding protein Gga1 domai 96.0
d1lsha1336 Lipovitellin-phosvitin complex, superhelical domai 92.2
d1w8oa1103 Sialidase, "linker" domain {Micromonospora viridif 91.43
d1ho8a_477 Regulatory subunit H of the V-type ATPase {Baker's 89.82
d1lrva_233 Leucine-rich repeat variant {Azotobacter vinelandi 85.84
d1lrva_233 Leucine-rich repeat variant {Azotobacter vinelandi 85.01
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kyfa1 b.1.10.1 (A:692-824) Alpha-adaptin AP2 ear domain, N-terminal subdomain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1e42a1 b.1.10.1 (A:705-824) Beta2-adaptin AP2 ear domain, N-terminal subdomain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} Back     information, alignment and structure
>d1gyva_ b.1.10.2 (A:) Gamma1-adaptin domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1p4ua_ b.1.10.2 (A:) ADP-ribosylation factor binding protein Gga3 domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2dwya1 b.1.10.2 (A:511-639) ADP-ribosylation factor binding protein Gga1 domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} Back     information, alignment and structure
>d1w8oa1 b.1.18.2 (A:403-505) Sialidase, "linker" domain {Micromonospora viridifaciens [TaxId: 1881]} Back     information, alignment and structure
>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure