Psyllid ID: psy8268

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60-
Protein Sequence
MPVACRRMVKLYLTNPAQTTLLCQYLLSLARYDQNYDIRDRARLLRQLLFPAPGAEIISYF
Secondary Structure (PSIPRED)
ccHHHHHHHHEEEEcccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccccccccccc
Coil and Loop (DISEMBL)
MPVACRRMVKLYLTNPAQTTLLCQYLLSLARYDQNYDIRDRARLLRQLlfpapgaeiisyf
Flexible Loop (DISEMBL)
MPVACRRMVKLYLTNPAQTTLLCQYLLSLARYDQNYDIRDRARLLRQLlfpapgaeiisyf
Low Complexity Region (SEG)
MPVACRRMVKLYLTNPAQTTLLCQYLLSLARYDQNYDIRDRARLLRQLLFPAPGAEIISYF
Disordered region (IsUnstruct)
***ACRRMVKLYLTNPAQTTLLCQYLLSLARYDQNYDIRDRARLLRQLLFPAPGAEII***
Disordered Region (DISOPRED)
*****RRMVKLYLTNPAQTTLLCQYLLSLARYDQNYDIRDRARLLRQLLF***********
Disordered Region (DISEMBL)
MPVACRRMVKLYLTNPAQTTLLCQYLLSLARYDQNYDIRDRARLLRQLLFPAPGAEIISYF
Disordered Region (DISPRO)
MPVACRRMVKLYLTNPAQTTLLCQYLLSLARYDQNYDIRDRARLLRQLLFPA*********
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MPVACRRMVKLYLTNPAQTTLLCQYLLSLARYDQNYDIRDRARLLRQLLFPAPGAEIISYF
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	61	2.2.26 [Sep-21-2011]
Q13367	1082	AP-3 complex subunit beta	yes	N/A	0.704	0.039	0.744	2e-12
Q9JME5	1082	AP-3 complex subunit beta	yes	N/A	0.704	0.039	0.744	3e-12
Q32PG1	1084	AP-3 complex subunit beta	no	N/A	0.688	0.038	0.690	1e-11
Q7YRF1	1091	AP-3 complex subunit beta	no	N/A	0.688	0.038	0.690	1e-11
O00203	1094	AP-3 complex subunit beta	no	N/A	0.688	0.038	0.690	2e-11
Q9Z1T1	1105	AP-3 complex subunit beta	no	N/A	0.852	0.047	0.576	2e-11
Q556J8	1108	AP-3 complex subunit beta	yes	N/A	0.688	0.037	0.452	2e-05

>sp|Q13367|AP3B2_HUMAN AP-3 complex subunit beta-2 OS=Homo sapiens GN=AP3B2 PE=1 SV=2

 Score = 70.9 bits (172), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/43 (74%), Positives = 36/43 (83%)

Query: 10  KLYLTNPAQTTLLCQYLLSLARYDQNYDIRDRARLLRQLLFPA 52
           KLYLTN  QT LL QY+LSLA+YDQNYDIRDRAR  RQL+ P+
Sbjct: 547 KLYLTNSKQTKLLTQYVLSLAKYDQNYDIRDRARFTRQLIVPS 589

Subunit of non-clathrin- and clathrin-associated adaptor protein complex 3 that plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The AP complexes mediate both the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules. AP-3 appears to be involved in the sorting of a subset of transmembrane proteins targeted to lysosomes and lysosome-related organelles.
Homo sapiens (taxid: 9606)

>sp|Q9JME5|AP3B2_MOUSE AP-3 complex subunit beta-2 OS=Mus musculus GN=Ap3b2 PE=1 SV=2

 Score = 70.5 bits (171), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/43 (74%), Positives = 36/43 (83%)

Query: 10  KLYLTNPAQTTLLCQYLLSLARYDQNYDIRDRARLLRQLLFPA 52
           KLYLTN  QT LL QY+LSLA+YDQNYDIRDRAR  RQL+ P+
Sbjct: 547 KLYLTNSKQTKLLTQYVLSLAKYDQNYDIRDRARFTRQLIVPS 589

Subunit of non-clathrin- and clathrin-associated adaptor protein complex 3 that plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The AP complexes mediate both the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules. AP-3 appears to be involved in the sorting of a subset of transmembrane proteins targeted to lysosomes and lysosome-related organelles.

Mus musculus (taxid: 10090)

>sp|Q32PG1|AP3B1_BOVIN AP-3 complex subunit beta-1 OS=Bos taurus GN=AP3B1 PE=2 SV=1

 Score = 68.6 bits (166), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/42 (69%), Positives = 34/42 (80%)

Query: 10  KLYLTNPAQTTLLCQYLLSLARYDQNYDIRDRARLLRQLLFP 51
           KLYLTN  QT LL QY+L+L +YDQNYDIRDR R +RQL+ P
Sbjct: 542 KLYLTNSKQTKLLTQYILNLGKYDQNYDIRDRTRFIRQLIVP 583

Subunit of non-clathrin- and clathrin-associated adaptor protein complex 3 that plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The AP complexes mediate both the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules. AP-3 appears to be involved in the sorting of a subset of transmembrane proteins targeted to lysosomes and lysosome-related organelles.

Bos taurus (taxid: 9913)

>sp|Q7YRF1|AP3B1_CANFA AP-3 complex subunit beta-1 OS=Canis familiaris GN=AP3B1 PE=2 SV=1

 Score = 68.2 bits (165), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/42 (69%), Positives = 34/42 (80%)

Query: 10  KLYLTNPAQTTLLCQYLLSLARYDQNYDIRDRARLLRQLLFP 51
           KLYLTN  QT LL QY+L+L +YDQNYDIRDR R +RQL+ P
Sbjct: 542 KLYLTNSKQTKLLTQYILNLGKYDQNYDIRDRTRFIRQLIVP 583

Subunit of non-clathrin- and clathrin-associated adaptor protein complex 3 that plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The AP complexes mediate both the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules. AP-3 appears to be involved in the sorting of a subset of transmembrane proteins targeted to lysosomes and lysosome-related organelles.

Canis familiaris (taxid: 9615)

>sp|O00203|AP3B1_HUMAN AP-3 complex subunit beta-1 OS=Homo sapiens GN=AP3B1 PE=1 SV=3

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/42 (69%), Positives = 34/42 (80%)

Query: 10  KLYLTNPAQTTLLCQYLLSLARYDQNYDIRDRARLLRQLLFP 51
           KLYLTN  QT LL QY+L+L +YDQNYDIRDR R +RQL+ P
Sbjct: 542 KLYLTNSKQTKLLTQYILNLGKYDQNYDIRDRTRFIRQLIVP 583

Subunit of non-clathrin- and clathrin-associated adaptor protein complex 3 that plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The AP complexes mediate both the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules. AP-3 appears to be involved in the sorting of a subset of transmembrane proteins targeted to lysosomes and lysosome-related organelles.

Homo sapiens (taxid: 9606)

>sp|Q9Z1T1|AP3B1_MOUSE AP-3 complex subunit beta-1 OS=Mus musculus GN=Ap3b1 PE=1 SV=2

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/52 (57%), Positives = 38/52 (73%)

Query: 10  KLYLTNPAQTTLLCQYLLSLARYDQNYDIRDRARLLRQLLFPAPGAEIISYF 61
           KLYLTN  QT LL QY+L+L +YDQNYDIRDR R +RQL+ P   +  +S +
Sbjct: 543 KLYLTNSKQTKLLTQYILNLGKYDQNYDIRDRTRFIRQLIVPNEKSGALSKY 594

Subunit of non-clathrin- and clathrin-associated adaptor protein complex 3 that plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The AP complexes mediate both the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules. AP-3 appears to be involved in the sorting of a subset of transmembrane proteins targeted to lysosomes and lysosome-related organelles.

Mus musculus (taxid: 10090)

>sp|Q556J8|AP3B_DICDI AP-3 complex subunit beta OS=Dictyostelium discoideum GN=ap3b-1 PE=3 SV=1

 Score = 47.8 bits (112), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/42 (45%), Positives = 30/42 (71%)

Query: 18  QTTLLCQYLLSLARYDQNYDIRDRARLLRQLLFPAPGAEIIS 59
           + TL+ QY+L+LA++DQNYDIRD +R+L+   F     + I+
Sbjct: 603 KITLMFQYVLNLAKFDQNYDIRDNSRMLKHFYFNTENTQSIN 644

Part of the AP-3 complex, an adaptor-related complex which is essential for the compartmentalization of the endocytic pathway.

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	61
198470760	1165	GA11000 [Drosophila pseudoobscura pseudo	0.819	0.042	0.72	8e-15
195162005	1165	GL14315 [Drosophila persimilis] gi|19410	0.819	0.042	0.72	8e-15
195397155	1157	GJ16489 [Drosophila virilis] gi|19414696	0.819	0.043	0.72	8e-15
157120529	1089	hypothetical protein AaeL_AAEL009039 [Ae	0.819	0.045	0.72	8e-15
195565063	1161	GD16295 [Drosophila simulans] gi|1942034	0.754	0.039	0.760	2e-14
33589466	1159	RE01344p [Drosophila melanogaster]	0.754	0.039	0.760	2e-14
195132901	1202	GI21469 [Drosophila mojavensis] gi|19390	0.819	0.041	0.7	2e-14
24639687	1160	ruby, isoform A [Drosophila melanogaster	0.754	0.039	0.760	2e-14
8071835	1160	ruby [Drosophila melanogaster] gi|372408	0.754	0.039	0.760	2e-14
281359832	1178	ruby, isoform B [Drosophila melanogaster	0.754	0.039	0.760	2e-14

>gi|198470760|ref|XP_001355393.2| GA11000 [Drosophila pseudoobscura pseudoobscura] gi|198145606|gb|EAL32451.2| GA11000 [Drosophila pseudoobscura pseudoobscura]

 Score = 84.3 bits (207), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 36/50 (72%), Positives = 42/50 (84%)

Query: 9   VKLYLTNPAQTTLLCQYLLSLARYDQNYDIRDRARLLRQLLFPAPGAEII 58
           VKLYLTNP QT+LLCQY+ +LARYD NYD+RDRAR LRQ +FPA GA  +
Sbjct: 574 VKLYLTNPQQTSLLCQYVFTLARYDNNYDVRDRARFLRQFIFPANGASTV 623

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195162005|ref|XP_002021846.1| GL14315 [Drosophila persimilis] gi|194103744|gb|EDW25787.1| GL14315 [Drosophila persimilis]

 Score = 84.3 bits (207), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 36/50 (72%), Positives = 42/50 (84%)

Query: 9   VKLYLTNPAQTTLLCQYLLSLARYDQNYDIRDRARLLRQLLFPAPGAEII 58
           VKLYLTNP QT+LLCQY+ +LARYD NYD+RDRAR LRQ +FPA GA  +
Sbjct: 574 VKLYLTNPQQTSLLCQYVFTLARYDNNYDVRDRARFLRQFIFPANGASTV 623

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195397155|ref|XP_002057194.1| GJ16489 [Drosophila virilis] gi|194146961|gb|EDW62680.1| GJ16489 [Drosophila virilis]

 Score = 84.3 bits (207), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 36/50 (72%), Positives = 42/50 (84%)

Query: 9   VKLYLTNPAQTTLLCQYLLSLARYDQNYDIRDRARLLRQLLFPAPGAEII 58
           VKLYLTNPAQT+LLCQY+ +LARYD NYD+RDRAR LRQ +FPA G   +
Sbjct: 587 VKLYLTNPAQTSLLCQYVFTLARYDTNYDVRDRARFLRQFIFPASGGTTV 636

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157120529|ref|XP_001653649.1| hypothetical protein AaeL_AAEL009039 [Aedes aegypti] gi|108874924|gb|EAT39149.1| AAEL009039-PA, partial [Aedes aegypti]

 Score = 84.3 bits (207), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 36/50 (72%), Positives = 42/50 (84%)

Query: 9   VKLYLTNPAQTTLLCQYLLSLARYDQNYDIRDRARLLRQLLFPAPGAEII 58
           VKLYLTNP QT LLCQY+ +LARYDQNYDIRDRAR L+Q +FPA G + +
Sbjct: 533 VKLYLTNPQQTELLCQYVFNLARYDQNYDIRDRARFLKQFIFPAGGKQTV 582

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195565063|ref|XP_002106125.1| GD16295 [Drosophila simulans] gi|194203497|gb|EDX17073.1| GD16295 [Drosophila simulans]

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/46 (76%), Positives = 41/46 (89%)

Query: 9   VKLYLTNPAQTTLLCQYLLSLARYDQNYDIRDRARLLRQLLFPAPG 54
           VKLYLTNP QT+LLCQY+ +LARYD NYD+RDRAR LRQ++FPA G
Sbjct: 578 VKLYLTNPEQTSLLCQYVFTLARYDPNYDVRDRARFLRQIIFPASG 623

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|33589466|gb|AAQ22500.1| RE01344p [Drosophila melanogaster]

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/46 (76%), Positives = 41/46 (89%)

Query: 9   VKLYLTNPAQTTLLCQYLLSLARYDQNYDIRDRARLLRQLLFPAPG 54
           VKLYLTNP QT+LLCQY+ +LARYD NYD+RDRAR LRQ++FPA G
Sbjct: 558 VKLYLTNPEQTSLLCQYVFTLARYDPNYDVRDRARFLRQIIFPASG 603

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195132901|ref|XP_002010878.1| GI21469 [Drosophila mojavensis] gi|193907666|gb|EDW06533.1| GI21469 [Drosophila mojavensis]

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 35/50 (70%), Positives = 41/50 (82%)

Query: 9   VKLYLTNPAQTTLLCQYLLSLARYDQNYDIRDRARLLRQLLFPAPGAEII 58
           VKLYLTNP QT+LLCQY+ +LARYD NYD+RDRAR LRQ +FPA G   +
Sbjct: 598 VKLYLTNPEQTSLLCQYVFTLARYDTNYDVRDRARFLRQFIFPASGGSTV 647

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24639687|ref|NP_525071.2| ruby, isoform A [Drosophila melanogaster] gi|442615155|ref|NP_001259239.1| ruby, isoform C [Drosophila melanogaster] gi|7290497|gb|AAF45950.1| ruby, isoform A [Drosophila melanogaster] gi|440216434|gb|AGB95085.1| ruby, isoform C [Drosophila melanogaster]

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/46 (76%), Positives = 41/46 (89%)

Query: 9   VKLYLTNPAQTTLLCQYLLSLARYDQNYDIRDRARLLRQLLFPAPG 54
           VKLYLTNP QT+LLCQY+ +LARYD NYD+RDRAR LRQ++FPA G
Sbjct: 577 VKLYLTNPEQTSLLCQYVFTLARYDPNYDVRDRARFLRQIIFPASG 622

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|8071835|gb|AAF71924.1|AF247194_1 ruby [Drosophila melanogaster] gi|3724085|emb|CAA09771.1| Beta3 protein [Drosophila melanogaster]

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/46 (76%), Positives = 41/46 (89%)

Query: 9   VKLYLTNPAQTTLLCQYLLSLARYDQNYDIRDRARLLRQLLFPAPG 54
           VKLYLTNP QT+LLCQY+ +LARYD NYD+RDRAR LRQ++FPA G
Sbjct: 577 VKLYLTNPEQTSLLCQYVFTLARYDPNYDVRDRARFLRQIIFPASG 622

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|281359832|ref|NP_001162664.1| ruby, isoform B [Drosophila melanogaster] gi|272505970|gb|ACZ95201.1| ruby, isoform B [Drosophila melanogaster]

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/46 (76%), Positives = 41/46 (89%)

Query: 9   VKLYLTNPAQTTLLCQYLLSLARYDQNYDIRDRARLLRQLLFPAPG 54
           VKLYLTNP QT+LLCQY+ +LARYD NYD+RDRAR LRQ++FPA G
Sbjct: 577 VKLYLTNPEQTSLLCQYVFTLARYDPNYDVRDRARFLRQIIFPASG 622

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	61
FB|FBgn0003210	1178	rb "ruby" [Drosophila melanoga	0.819	0.042	0.7	3.4e-14
UNIPROTKB|B7ZKR7	1050	AP3B2 "AP3B2 protein" [Homo sa	0.704	0.040	0.744	7.6e-11
UNIPROTKB|Q13367	1082	AP3B2 "AP-3 complex subunit be	0.704	0.039	0.744	7.9e-11
UNIPROTKB|F1RI97	1082	F1RI97 "Uncharacterized protei	0.704	0.039	0.744	7.9e-11
MGI|MGI:1100869	1082	Ap3b2 "adaptor-related protein	0.704	0.039	0.744	7.9e-11
UNIPROTKB|F1P7W8	1084	AP3B2 "Uncharacterized protein	0.704	0.039	0.744	8e-11
UNIPROTKB|E1BME2	1085	AP3B2 "Uncharacterized protein	0.704	0.039	0.744	8e-11
UNIPROTKB|B7ZKS0	1101	AP3B2 "AP-3 complex subunit be	0.704	0.039	0.744	8.1e-11
UNIPROTKB|J9P1J6	1102	AP3B2 "Uncharacterized protein	0.704	0.039	0.744	8.1e-11
RGD|1308950	1082	Ap3b2 "adaptor-related protein	0.704	0.039	0.744	1e-10

FB|FBgn0003210 rb "ruby" [Drosophila melanogaster (taxid:7227)]

 Score = 196 (74.1 bits), Expect = 3.4e-14, P = 3.4e-14
 Identities = 35/50 (70%), Positives = 42/50 (84%)

Query:     9 VKLYLTNPAQTTLLCQYLLSLARYDQNYDIRDRARLLRQLLFPAPGAEII 58
             VKLYLTNP QT+LLCQY+ +LARYD NYD+RDRAR LRQ++FPA G   +
Sbjct:   577 VKLYLTNPEQTSLLCQYVFTLARYDPNYDVRDRARFLRQIIFPASGTSSV 626

GO:0006727 "ommochrome biosynthetic process" evidence=IMP

GO:0030135 "coated vesicle" evidence=TAS

GO:0008021 "synaptic vesicle" evidence=TAS

GO:0016183 "synaptic vesicle coating" evidence=TAS

GO:0006901 "vesicle coating" evidence=TAS

GO:0008057 "eye pigment granule organization" evidence=NAS

GO:0006726 "eye pigment biosynthetic process" evidence=TAS

GO:0007040 "lysosome organization" evidence=ISS

GO:0016192 "vesicle-mediated transport" evidence=NAS

GO:0030123 "AP-3 adaptor complex" evidence=ISS

GO:0046907 "intracellular transport" evidence=TAS

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0031396 "regulation of protein ubiquitination" evidence=IMP

GO:0008340 "determination of adult lifespan" evidence=IMP

GO:0007220 "Notch receptor processing" evidence=IMP

GO:0006897 "endocytosis" evidence=IMP

GO:0060967 "negative regulation of gene silencing by RNA" evidence=IMP

UNIPROTKB|B7ZKR7 AP3B2 "AP3B2 protein" [Homo sapiens (taxid:9606)]

 Score = 164 (62.8 bits), Expect = 7.6e-11, P = 7.6e-11
 Identities = 32/43 (74%), Positives = 36/43 (83%)

Query:    10 KLYLTNPAQTTLLCQYLLSLARYDQNYDIRDRARLLRQLLFPA 52
             KLYLTN  QT LL QY+LSLA+YDQNYDIRDRAR  RQL+ P+
Sbjct:   515 KLYLTNSKQTKLLTQYVLSLAKYDQNYDIRDRARFTRQLIVPS 557

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030123 "AP-3 adaptor complex" evidence=IEA

GO:0044431 "Golgi apparatus part" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

UNIPROTKB|Q13367 AP3B2 "AP-3 complex subunit beta-2" [Homo sapiens (taxid:9606)]

 Score = 164 (62.8 bits), Expect = 7.9e-11, P = 7.9e-11
 Identities = 32/43 (74%), Positives = 36/43 (83%)

Query:    10 KLYLTNPAQTTLLCQYLLSLARYDQNYDIRDRARLLRQLLFPA 52
             KLYLTN  QT LL QY+LSLA+YDQNYDIRDRAR  RQL+ P+
Sbjct:   547 KLYLTNSKQTKLLTQYVLSLAKYDQNYDIRDRARFTRQLIVPS 589

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0030123 "AP-3 adaptor complex" evidence=IEA

GO:0006897 "endocytosis" evidence=IEA

GO:0030665 "clathrin-coated vesicle membrane" evidence=IEA

GO:0008089 "anterograde axon cargo transport" evidence=ISS

GO:0048490 "anterograde synaptic vesicle transport" evidence=ISS

GO:0005215 "transporter activity" evidence=TAS

GO:0030137 "COPI-coated vesicle" evidence=TAS

GO:0006892 "post-Golgi vesicle-mediated transport" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

UNIPROTKB|F1RI97 F1RI97 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 164 (62.8 bits), Expect = 7.9e-11, P = 7.9e-11
 Identities = 32/43 (74%), Positives = 36/43 (83%)

Query:    10 KLYLTNPAQTTLLCQYLLSLARYDQNYDIRDRARLLRQLLFPA 52
             KLYLTN  QT LL QY+LSLA+YDQNYDIRDRAR  RQL+ P+
Sbjct:   547 KLYLTNSKQTKLLTQYVLSLAKYDQNYDIRDRARFTRQLIVPS 589

GO:0030123 "AP-3 adaptor complex" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

MGI|MGI:1100869 Ap3b2 "adaptor-related protein complex 3, beta 2 subunit" [Mus musculus (taxid:10090)]

 Score = 164 (62.8 bits), Expect = 7.9e-11, P = 7.9e-11
 Identities = 32/43 (74%), Positives = 36/43 (83%)

Query:    10 KLYLTNPAQTTLLCQYLLSLARYDQNYDIRDRARLLRQLLFPA 52
             KLYLTN  QT LL QY+LSLA+YDQNYDIRDRAR  RQL+ P+
Sbjct:   547 KLYLTNSKQTKLLTQYVLSLAKYDQNYDIRDRARFTRQLIVPS 589

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005802 "trans-Golgi network" evidence=TAS

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=TAS

GO:0006897 "endocytosis" evidence=IEA

GO:0008089 "anterograde axon cargo transport" evidence=IMP

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=TAS

GO:0030117 "membrane coat" evidence=IEA

GO:0030123 "AP-3 adaptor complex" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0048490 "anterograde synaptic vesicle transport" evidence=IMP

UNIPROTKB|F1P7W8 AP3B2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 164 (62.8 bits), Expect = 8.0e-11, P = 8.0e-11
 Identities = 32/43 (74%), Positives = 36/43 (83%)

Query:    10 KLYLTNPAQTTLLCQYLLSLARYDQNYDIRDRARLLRQLLFPA 52
             KLYLTN  QT LL QY+LSLA+YDQNYDIRDRAR  RQL+ P+
Sbjct:   529 KLYLTNSKQTKLLTQYVLSLAKYDQNYDIRDRARFTRQLIVPS 571

GO:0030123 "AP-3 adaptor complex" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

UNIPROTKB|E1BME2 AP3B2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 164 (62.8 bits), Expect = 8.0e-11, P = 8.0e-11
 Identities = 32/43 (74%), Positives = 36/43 (83%)

Query:    10 KLYLTNPAQTTLLCQYLLSLARYDQNYDIRDRARLLRQLLFPA 52
             KLYLTN  QT LL QY+LSLA+YDQNYDIRDRAR  RQL+ P+
Sbjct:   547 KLYLTNSKQTKLLTQYVLSLAKYDQNYDIRDRARFTRQLIVPS 589

GO:0048490 "anterograde synaptic vesicle transport" evidence=IEA

GO:0008089 "anterograde axon cargo transport" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0044431 "Golgi apparatus part" evidence=IEA

GO:0030123 "AP-3 adaptor complex" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

UNIPROTKB|B7ZKS0 AP3B2 "AP-3 complex subunit beta-2" [Homo sapiens (taxid:9606)]

 Score = 164 (62.8 bits), Expect = 8.1e-11, P = 8.1e-11
 Identities = 32/43 (74%), Positives = 36/43 (83%)

Query:    10 KLYLTNPAQTTLLCQYLLSLARYDQNYDIRDRARLLRQLLFPA 52
             KLYLTN  QT LL QY+LSLA+YDQNYDIRDRAR  RQL+ P+
Sbjct:   547 KLYLTNSKQTKLLTQYVLSLAKYDQNYDIRDRARFTRQLIVPS 589

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030123 "AP-3 adaptor complex" evidence=IEA

GO:0044431 "Golgi apparatus part" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

UNIPROTKB|J9P1J6 AP3B2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 164 (62.8 bits), Expect = 8.1e-11, P = 8.1e-11
 Identities = 32/43 (74%), Positives = 36/43 (83%)

Query:    10 KLYLTNPAQTTLLCQYLLSLARYDQNYDIRDRARLLRQLLFPA 52
             KLYLTN  QT LL QY+LSLA+YDQNYDIRDRAR  RQL+ P+
Sbjct:   590 KLYLTNSKQTKLLTQYVLSLAKYDQNYDIRDRARFTRQLIVPS 632

GO:0030123 "AP-3 adaptor complex" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

RGD|1308950 Ap3b2 "adaptor-related protein complex 3, beta 2 subunit" [Rattus norvegicus (taxid:10116)]

 Score = 163 (62.4 bits), Expect = 1.0e-10, P = 1.0e-10
 Identities = 32/43 (74%), Positives = 36/43 (83%)

Query:    10 KLYLTNPAQTTLLCQYLLSLARYDQNYDIRDRARLLRQLLFPA 52
             KLYLTN  QT LL QY+LSLA+YDQNYDIRDRAR  RQL+ P+
Sbjct:   547 KLYLTNSKQTKLLTQYVLSLAKYDQNYDIRDRARFTRQLIAPS 589

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=IEA;ISO

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0008089 "anterograde axon cargo transport" evidence=IEA;ISO

GO:0030123 "AP-3 adaptor complex" evidence=IEA

GO:0048490 "anterograde synaptic vesicle transport" evidence=IEA;ISO

GO:0005730 "nucleolus" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q13367	AP3B2_HUMAN	No assigned EC number	0.7441	0.7049	0.0397	yes	N/A
Q9JME5	AP3B2_MOUSE	No assigned EC number	0.7441	0.7049	0.0397	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	61
pfam01602	522	pfam01602, Adaptin_N, Adaptin N terminal region	4e-07

>gnl|CDD|216598 pfam01602, Adaptin_N, Adaptin N terminal region

 Score = 44.1 bits (105), Expect = 4e-07
 Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 3/49 (6%)

Query: 8   MVKLYLTNPAQTT--LLCQYLLSLARYDQ-NYDIRDRARLLRQLLFPAP 53
           +VKL LT P +    L+ Q +LSLA  D  + ++RDRA    +LL  A 
Sbjct: 474 LVKLSLTFPDEEVQNLIVQVVLSLATQDSSDLELRDRAVEYLRLLSLAD 522

This family consists of the N terminal region of various alpha, beta and gamma subunits of the AP-1, AP-2 and AP-3 adaptor protein complexes. The adaptor protein (AP) complexes are involved in the formation of clathrin-coated pits and vesicles. The N-terminal region of the various adaptor proteins (APs) is constant by comparison to the C-terminal which is variable within members of the AP-2 family; and it has been proposed that this constant region interacts with another uniform component of the coated vesicles. Length = 522

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	61
KOG1060|consensus	968		99.64
PTZ00429	746	beta-adaptin; Provisional	98.62
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	97.81
KOG1061|consensus	734		93.8
COG5096	757	Vesicle coat complex, various subunits [Intracellu	93.16

>KOG1060|consensus

Probab=99.64  E-value=4e-17  Score=131.76  Aligned_cols=50  Identities=60%  Similarity=0.857  Sum_probs=48.3

Q ss_pred             eeeeehhhhhcCchhHHHHHHHHHHhhcccCCcchhHHHHHHHHHhCCCC
Q psy8268           4 ACRRMVKLYLTNPAQTTLLCQYLLSLARYDQNYDIRDRARLLRQLLFPAP   53 (61)
Q Consensus         4 ~L~LaAKL~~~~~~~~~~l~~yvl~LakyD~~yDiRDRaRfl~~Ll~~~~   53 (61)
                      +|+|+||||++++++++++++||++|++||+|||||||+||++.|+.+.+
T Consensus       524 ILnL~aKLyl~~~~~~kll~~Yv~~L~~yD~sYDiRDRaRF~r~l~~~~~  573 (968)
T KOG1060|consen  524 ILNLSAKLYLTNIDQTKLLVQYVFELARYDLSYDIRDRARFLRQLISPLE  573 (968)
T ss_pred             HHHhhhhheEechhhHHHHHHHHHHHhccCCCcchhHHHHHHHHHhccHH
Confidence            58999999999999999999999999999999999999999999998866

>PTZ00429 beta-adaptin; Provisional

Probab=98.62  E-value=2.9e-08  Score=79.26  Aligned_cols=50  Identities=24%  Similarity=0.299  Sum_probs=44.6

Q ss_pred             eeeeehhhhhcCchhHHHHHHHHHH-hhcccCCcchhHHHHHHHHHhCCCC
Q psy8268           4 ACRRMVKLYLTNPAQTTLLCQYLLS-LARYDQNYDIRDRARLLRQLLFPAP   53 (61)
Q Consensus         4 ~L~LaAKL~~~~~~~~~~l~~yvl~-LakyD~~yDiRDRaRfl~~Ll~~~~   53 (61)
                      .|+.++|+++..|.+.+.+.++||+ ++++|.|+||||||+|+-.|+..+.
T Consensus       498 lLta~vKlfl~~p~~~~~~l~~vL~~~t~~~~d~DVRDRA~~Y~rLLs~~~  548 (746)
T PTZ00429        498 ILSAAVKMFLRDPQGMEPQLNRVLETVTTHSDDPDVRDRAFAYWRLLSKGI  548 (746)
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCC
Confidence            5788999999999888889999995 5699999999999999999998653

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.81  E-value=5.3e-06  Score=60.02  Aligned_cols=48  Identities=38%  Similarity=0.508  Sum_probs=41.0

Q ss_pred             eeeeehhhhhcCch--hHHHHHHHHHHhhcccC-CcchhHHHHHHHHHhCC
Q psy8268           4 ACRRMVKLYLTNPA--QTTLLCQYLLSLARYDQ-NYDIRDRARLLRQLLFP   51 (61)
Q Consensus         4 ~L~LaAKL~~~~~~--~~~~l~~yvl~LakyD~-~yDiRDRaRfl~~Ll~~   51 (61)
                      .++..+|++..+|+  ....+.+++.+++++|. |+||||||+++..|+..
T Consensus       474 ilt~~~Kl~~~~~~~~~~~~i~~~~~~~~~~~s~~~evr~Ra~~y~~ll~~  524 (526)
T PF01602_consen  474 ILTALAKLFKRNPENEVQNEILQFLLSLATEDSSDPEVRDRAREYLRLLNS  524 (526)
T ss_dssp             HHHHHHHHHHHSCSTTHHHHHHHHHHCHHHHS-SSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhCCchhhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHcc
Confidence            46788999999985  34699999999999855 99999999999999864

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>KOG1061|consensus

Probab=93.80  E-value=0.051  Score=44.59  Aligned_cols=47  Identities=36%  Similarity=0.505  Sum_probs=43.0

Q ss_pred             eeeehhhhhcCchhHHHHHHHHHHhhcccCCc-chhHHHHHHHHHhCC
Q psy8268           5 CRRMVKLYLTNPAQTTLLCQYLLSLARYDQNY-DIRDRARLLRQLLFP   51 (61)
Q Consensus         5 L~LaAKL~~~~~~~~~~l~~yvl~LakyD~~y-DiRDRaRfl~~Ll~~   51 (61)
                      |+-+.|+++..|.+.+.|.+.||++|-=|.+- |+|||+=|+..+++.
T Consensus       481 Lta~ik~Fl~~p~~tq~~l~~vL~~~~~d~~~~dlrDr~l~Y~RlLs~  528 (734)
T KOG1061|consen  481 LTAAIKLFLKKPTETQELLQGVLPLATADTDNPDLRDRGLIYWRLLSE  528 (734)
T ss_pred             HHHHHHHHhcCCccHHHHHHHHHhhhhccccChhhhhhHHHHHHHhhc
Confidence            45578999999999999999999999999988 999999999999984

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=93.16  E-value=0.049  Score=44.69  Aligned_cols=40  Identities=33%  Similarity=0.408  Sum_probs=30.9

Q ss_pred             eeeehhhhhcCchhH------------HHHHHHHHHhhcccCCcchhHHHHHHHHHhCC
Q psy8268           5 CRRMVKLYLTNPAQT------------TLLCQYLLSLARYDQNYDIRDRARLLRQLLFP   51 (61)
Q Consensus         5 L~LaAKL~~~~~~~~------------~~l~~yvl~LakyD~~yDiRDRaRfl~~Ll~~   51 (61)
                      ++.++|+++.+++..            ...++|+..+       |+||||+|+..++++
T Consensus       511 l~~svkl~~~~~~~~~~~~~~~d~~v~~~~~~~v~~~-------DlRDra~my~~~lst  562 (757)
T COG5096         511 LMSSVKLIANSIRKAKQCNSELDQDVLRRCFDYVLVP-------DLRDRARMYSRLLST  562 (757)
T ss_pred             HHHHHHHHHhCcHhhhhccchhccHHHHHHHhccCCh-------hHHHHHHHHHHHhcC
Confidence            567889998887543            3356666666       999999999999983

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	61
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	2e-09

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Length = 591

 Score = 50.1 bits (120), Expect = 2e-09
 Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 1/47 (2%)

Query: 8   MVKLYLTNPAQTTLLCQYLLSLARYDQ-NYDIRDRARLLRQLLFPAP 53
           +VKL+L  P++T  L Q +LSLA  D  N D+RDR  +  +LL   P
Sbjct: 488 IVKLFLKKPSETQELVQQVLSLATQDSDNPDLRDRGYIYWRLLSTDP 534

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	61
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	97.96
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	97.8
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	96.82

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=97.96  E-value=2.5e-06  Score=62.34  Aligned_cols=50  Identities=42%  Similarity=0.594  Sum_probs=44.2

Q ss_pred             eeeeehhhhhcCchhHHHHHHHHHHhhccc-CCcchhHHHHHHHHHhCCCC
Q psy8268           4 ACRRMVKLYLTNPAQTTLLCQYLLSLARYD-QNYDIRDRARLLRQLLFPAP   53 (61)
Q Consensus         4 ~L~LaAKL~~~~~~~~~~l~~yvl~LakyD-~~yDiRDRaRfl~~Ll~~~~   53 (61)
                      +|+..+|++...|+....+.+++|+.+.+| .|+||||||+++..|+..++
T Consensus       484 ~l~a~~Kl~~~~p~~~~~~i~~ll~~~~~d~~d~evrdRA~~y~~ll~~~~  534 (591)
T 2vgl_B          484 LLTAIVKLFLKKPSETQELVQQVLSLATQDSDNPDLRDRGYIYWRLLSTDP  534 (591)
T ss_dssp             HHHHHHHHHTTCCSTTHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTTTTCT
T ss_pred             HHHHHHHHHhcCchHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHCcCH
Confidence            567889999999987778999999999998 89999999999999997643

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=97.80  E-value=5.5e-06  Score=61.90  Aligned_cols=49  Identities=16%  Similarity=0.114  Sum_probs=43.1

Q ss_pred             eeeeeehhhhhcCchhHHHHHHHHHHhhcc--cCCcchhHHHHHHHHHhCCC
Q psy8268           3 VACRRMVKLYLTNPAQTTLLCQYLLSLARY--DQNYDIRDRARLLRQLLFPA   52 (61)
Q Consensus         3 ~~L~LaAKL~~~~~~~~~~l~~yvl~Laky--D~~yDiRDRaRfl~~Ll~~~   52 (61)
                      .+|+.++|++...|+ .....+++|+.+.+  |.|+||||||+++..|+..+
T Consensus       540 ~~Lta~~Kl~~~~p~-~~~~i~~~l~~~~~~~~~d~evrdRA~~y~~Ll~~~  590 (621)
T 2vgl_A          540 LLLSTYIKFVNLFPE-VKATIQDVLRSDSQLKNADVELQQRAVEYLRLSTVA  590 (621)
T ss_dssp             HHHHHHHHHHHHCGG-GHHHHHHHHSSHHHHSCSSHHHHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHHChH-HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHccC
Confidence            357888999998886 46789999999999  99999999999999999754

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=96.82  E-value=0.00051  Score=50.74  Aligned_cols=48  Identities=15%  Similarity=0.086  Sum_probs=39.7

Q ss_pred             eeeeehhhhhcCchhHHHHHHHHHHhhcccCCcchhHHHHHHHHHhCCC
Q psy8268           4 ACRRMVKLYLTNPAQTTLLCQYLLSLARYDQNYDIRDRARLLRQLLFPA   52 (61)
Q Consensus         4 ~L~LaAKL~~~~~~~~~~l~~yvl~LakyD~~yDiRDRaRfl~~Ll~~~   52 (61)
                      +|+..+|++...|+. ....+.+|..+..|.|.||||||+++..|+...
T Consensus       531 ~lta~~Kl~~~~~~~-~~~l~~~L~~~~~~~d~evrdRA~~y~~ll~~~  578 (618)
T 1w63_A          531 ALTAIMKLSTRFTCT-VNRIKKVVSIYGSSIDVELQQRAVEYNALFKKY  578 (618)
T ss_dssp             HHHHHHHHHTTCSSC-HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhCcch-HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCc
Confidence            466778999998865 556677888888889999999999999998763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	61
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	96.71