Psyllid ID: psy8282

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630--
MPFALNLCYFVIKGNFSLVRCGRYIEEHSMLHGVSTEHPLALSFADLSVWCYVCEAYVDNHLLALLIYLYGVMYVNPMSIIITEHPLALSFADLSVWCYVCEAYVDNHLLALLIYLYGVMYVKPMSIIITEHPLALSFADLSVWGYVCEPYVDNHVVDSVLNGESAHGVAIIRPPGHHAEQDEPCGFCIFNNVSVAAKYALDNHGLSRVLILDWDVHHGNGTQAMFYNDPRVLYISVHRYDHGSFFPHSKDAGPHNVGEGKGEGFNVNVAWNKKGMSDPEYIAAFQQVILPMYALDNHGLSRVLILDWDVHHGNGTQAMFYNDPRVLYISVHRYDHGSFFPHSKDAGPHNVGEGKGEGFNVNVAWNKVVDSVLNGESAHGVAIIRPPGHHAEQDEPCGFCIFNNVSVAAKYALDNHGLSRVLILDWDVHHGNGTQAMFYNDPRVLYISVHRYDHGSFFPHSKDAGPHNVGEGKGEGFNVNVAWNKKGMSDPEYIAAFQQVILPIAYQFNPELVLVSAGYDACVNDPLGGCKVSPEAYAHFTHWLKALAQGRIILALEGGYNISSISYAMTLCTKALLGDPLPLLESDLDINSSAVTSIKETISSHKAYWSSLKFLVALPENKLLSADYAQLA
ccccccEEEEEEEccccEEEEccHHHHHHHHHcccccccccccccccEEEEcccccccccHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEccccHHHHHHHHHccccccccccHHHHHHHHccccccEEEEEcccccccccccccccccccHHHHHHHHHHHHccccEEEEEcccccccccccccHHccccEEEEEEccccccccccccccccccccccccccccEEEcccccccccHHHHHHHHHHHHccccccccccccEEEEEcccccccccccccccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccHHHHHHHHHHHHccccEEEEEEccccccHHHHHcHHccccEEEEEEccccccccccccccccccccccccccccEEEcccccccccHHHHHHHHHHHHHHHHHcccccEEEEEcccccccccccccccccHHHHHHHHHHHHHHccccEEEEEcccccccHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccHHHccccccccc
cccEEEEEEEEEcccEEEHHHHHHHHHHHHHHcccccccEEEEEEccEEEEEEEccccccHHHHHHHHHHcccccccHHHHHHHHHHHHHcHHHHHHHccccccccHHHHHHHHHHccHHHHHHHHHHcccccccEEcccccHHHHHHHHHHHHHHHHHHHHccccccEEEEcccccccccccccccHHHHHHHHHHHHHHHHccccEEEEEEcEcccccccHHHHcccccEEEEEEEEccccccccccccccHHHcccccccEEEEEEcccccccccHHHHHHHHHHHHHHHHHcccccEEEEEEcccccccccccEEccccccEEEEEccccccccHHHHHcccccEEEcccccccccHHHHHHHHHHHHHcccccccEEEEcccccccccccccccHHHHHHHHHHHHHHHHccccEEEEEEEEcccccccHHHHcccccEEEEEEEEccccccccccccccHHHccccccccEEEEEcccccccccHHHHHHHHHHHHHHHHHccccEEEEEcccccccccccccccccHHHHHHHHHHHHHHccccEEEEEcccccHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHcccccc
MPFALNLCYFVIKgnfslvrcgryieehsmlhgvstehplalsFADLSVWCYVCEAYVDNHLLALLIYLYGVmyvnpmsiiitehplalsFADLSVWCYVCEAYVDNHLLALLIYLYGVmyvkpmsiiitehplalSFADLSVwgyvcepyvdnhvvdsvlngesahgvaiirppghhaeqdepcgfcifnNVSVAAKYAldnhglsrVLILDWdvhhgngtqamfyndprvLYISVhrydhgsffphskdagphnvgegkgegfNVNVAWnkkgmsdpeYIAAFQQVILPMyaldnhglsrVLILDWdvhhgngtqamfyndprvLYISVhrydhgsffphskdagphnvgegkgegfNVNVAWNKVVDSVlngesahgvaiirppghhaeqdepcgfcifnNVSVAAKYAldnhglsrVLILDWdvhhgngtqamfyndprvLYISVhrydhgsffphskdagphnvgegkgegfNVNVAWnkkgmsdpeYIAAFQQVILPIAYQFNPELVLVSAgydacvndplggckvspeaYAHFTHWLKALAQGRIILALEGGYNISSISYAMTLCTKallgdplpllesdldinsSAVTSIKETISSHKAYWSSLKFLVALPENKLLSADYAQLA
MPFALNLCYFVIKGNFSLVRCGRYIEEHSMLHGVSTEHPLALSFADLSVWCYVCEAYVDNHLLALLIYLYGVMYVNPMSIIITEHPLALSFADLSVWCYVCEAYVDNHLLALLIYLYGVMYVKPMSIIITEHPLALSFADLSVWGYVCEPYVDNHVVDSVLNGESAHGVAIIRPPGHHAEQDEPCGFCIFNNVSVAAKYALDNHGLSRVLILDWDVHHGNGTQAMFYNDPRVLYISVHRYDHGSFFPHSKDAGPHNVGEGKGEGFNVNVAWNKKGMSDPEYIAAFQQVILPMYALDNHGLSRVLILDWDVHHGNGTQAMFYNDPRVLYISVHRYDHGSFFPHSKDAGPHNVGEGKGEGFNVNVAWNKVVDSVLNGESAHGVAIIRPPGHHAEQDEPCGFCIFNNVSVAAKYALDNHGLSRVLILDWDVHHGNGTQAMFYNDPRVLYISVHRYDHGSFFPHSKDAGPHNVGEGKGEGFNVNVAWNKKGMSDPEYIAAFQQVILPIAYQFNPELVLVSAGYDACVNDPLGGCKVSPEAYAHFTHWLKALAQGRIILALEGGYNISSISYAMTLCTKALLGDPLPLLESDLDINSSAVTSIKETISSHKAYWSSLKFLVALPENKLLSADYAQLA
MPFALNLCYFVIKGNFSLVRCGRYIEEHSMLHGVSTEHPLALSFADLSVWCYVCEAYVDNHLLALLIYLYGVMYVNPMSIIITEHPLALSFADLSVWCYVCEAYVDNHLLALLIYLYGVMYVKPMSIIITEHPLALSFADLSVWGYVCEPYVDNHVVDSVLNGESAHGVAIIRPPGHHAEQDEPCGFCIFNNVSVAAKYALDNHGLSRVLILDWDVHHGNGTQAMFYNDPRVLYISVHRYDHGSFFPHSKDAGPHNVGEGKGEGFNVNVAWNKKGMSDPEYIAAFQQVILPMYALDNHGLSRVLILDWDVHHGNGTQAMFYNDPRVLYISVHRYDHGSFFPHSKDAGPHNVGEGKGEGFNVNVAWNKVVDSVLNGESAHGVAIIRPPGHHAEQDEPCGFCIFNNVSVAAKYALDNHGLSRVLILDWDVHHGNGTQAMFYNDPRVLYISVHRYDHGSFFPHSKDAGPHNVGEGKGEGFNVNVAWNKKGMSDPEYIAAFQQVILPIAYQFNPELVLVSAGYDACVNDPLGGCKVSPEAYAHFTHWLKALAQGRIILALEGGYNISSISYAMTLCTKALLGDPLPLLESDLDINSSAVTSIKETISSHKAYWSSLKFLVALPENKLLSADYAQLA
**FALNLCYFVIKGNFSLVRCGRYIEEHSMLHGVSTEHPLALSFADLSVWCYVCEAYVDNHLLALLIYLYGVMYVNPMSIIITEHPLALSFADLSVWCYVCEAYVDNHLLALLIYLYGVMYVKPMSIIITEHPLALSFADLSVWGYVCEPYVDNHVVDSVLNGESAHGVAIIRPPGHHAEQDEPCGFCIFNNVSVAAKYALDNHGLSRVLILDWDVHHGNGTQAMFYNDPRVLYISVHRYDHGSFFPH*************GEGFNVNVAWNKKGMSDPEYIAAFQQVILPMYALDNHGLSRVLILDWDVHHGNGTQAMFYNDPRVLYISVHRYDHGSFFPH************KGEGFNVNVAWNKVVDSVLNGESAHGVAIIRPPGHHAEQDEPCGFCIFNNVSVAAKYALDNHGLSRVLILDWDVHHGNGTQAMFYNDPRVLYISVHRYDHGSFFPH*************GEGFNVNVAWNKKGMSDPEYIAAFQQVILPIAYQFNPELVLVSAGYDACVNDPLGGCKVSPEAYAHFTHWLKALAQGRIILALEGGYNISSISYAMTLCTKALLGDPLPLLESDLDINSSAVTSIKETISSHKAYWSSLKFLVALPENKLL********
*PFALNLCYFVIKGNFSLVRCGRYIEEHSMLHGVSTEHPLALSFADLSVWCYVCEAYVDNHLLALLIYLYGVMYVNPMSIIITEHPLALSFADLSVWCYVCEAYVDNHLLALLIYLYGVMYVKPMSIIITEHPLALSFADLSVWGYVCEPYVDNHVVDSVLNGESAHGVAIIRPPGHHAEQDEPCGFCIFNNVSVAAKYALDNHGLSRVLILDWDVHHGNGTQAMFYNDPRVLYISVHRYDHGSFFPHSKDAGPHNVGEGKGEGFNVNVAWNKKGMSDPEYIAAFQQVILPMYALDNHGLSRVLILDWDVHHGNGTQAMFYNDPRVLYISVHRYDHGSFFPHSKDAGPHNVGEGKGEGFNVNVAWNKVVDSVLNGESAHGVAIIRPPGHHAEQDEPCGFCIFNNVSVAAKYALDNHGLSRVLILDWDVHHGNGTQAMFYNDPRVLYISVHRYDHGSFFPHSKDAGPHNVGEGKGEGFNVNVAWNKKGMSDPEYIAAFQQVILPIAYQFNPELVLVSAGYDACVNDPLGGCKVSPEAYAHFTHWLKALAQGRIILALEGGYNISSISYAMTLCTKALLGDPLP***********AVTSIKETISSHKAYWSSLKFL*****************
MPFALNLCYFVIKGNFSLVRCGRYIEEHSMLHGVSTEHPLALSFADLSVWCYVCEAYVDNHLLALLIYLYGVMYVNPMSIIITEHPLALSFADLSVWCYVCEAYVDNHLLALLIYLYGVMYVKPMSIIITEHPLALSFADLSVWGYVCEPYVDNHVVDSVLNGESAHGVAIIRPPGHHAEQDEPCGFCIFNNVSVAAKYALDNHGLSRVLILDWDVHHGNGTQAMFYNDPRVLYISVHRYDHGSFFPHSKDAGPHNVGEGKGEGFNVNVAWNKKGMSDPEYIAAFQQVILPMYALDNHGLSRVLILDWDVHHGNGTQAMFYNDPRVLYISVHRYDHGSFFPHSKDAGPHNVGEGKGEGFNVNVAWNKVVDSVLNGESAHGVAIIRPPGHHAEQDEPCGFCIFNNVSVAAKYALDNHGLSRVLILDWDVHHGNGTQAMFYNDPRVLYISVHRYDHGSFFPHSKDAGPHNVGEGKGEGFNVNVAWNKKGMSDPEYIAAFQQVILPIAYQFNPELVLVSAGYDACVNDPLGGCKVSPEAYAHFTHWLKALAQGRIILALEGGYNISSISYAMTLCTKALLGDPLPLLESDLDINSSAVTSIKETISSHKAYWSSLKFLVALPENKLLSADYAQLA
MPFALNLCYFVIKGNFSLVRCGRYIEEHSMLHGVSTEHPLALSFADLSVWCYVCEAYVDNHLLALLIYLYGVMYVNPMSIIITEHPLALSFADLSVWCYVCEAYVDNHLLALLIYLYGVMYVKPMSIIITEHPLALSFADLSVWGYVCEPYVDNHVVDSVLNGESAHGVAIIRPPGHHAEQDEPCGFCIFNNVSVAAKYALDNHGLSRVLILDWDVHHGNGTQAMFYNDPRVLYISVHRYDHGSFFPHSKDAGPHNVGEGKGEGFNVNVAWNKKGMSDPEYIAAFQQVILPMYALDNHGLSRVLILDWDVHHGNGTQAMFYNDPRVLYISVHRYDHGSFFPHSKDAGPHNVGEGKGEGFNVNVAWNKVVDSVLNGESAHGVAIIRPPGHHAEQDEPCGFCIFNNVSVAAKYALDNHGLSRVLILDWDVHHGNGTQAMFYNDPRVLYISVHRYDHGSFFPHSKDAGPHNVGEGKGEGFNVNVAWNKKGMSDPEYIAAFQQVILPIAYQFNPELVLVSAGYDACVNDPLGGCKVSPEAYAHFTHWLKALAQGRIILALEGGYNISSISYAMTLCTKALLGDPLPLLESDLDINSSAVTSIKETISSHKAYWSSLKFLV****************
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MPFALNLCYFVIKGNFSLVRCGRYIEEHSMLHGVSTEHPLALSFADLSVWCYVCEAYVDNHLLALLIYLYGVMYVNPMSIIITEHPLALSFADLSVWCYVCEAYVDNHLLALLIYLYGVMYVKPMSIIITEHPLALSFADLSVWGYVCEPYVDNHVVDSVLNGESAHGVAIIRPPGHHAEQDEPCGFCIFNNVSVAAKYALDNHGLSRVLILDWDVHHGNGTQAMFYNDPRVLYISVHRYDHGSFFPHSKDAGPHNVGEGKGEGFNVNVAWNKKGMSDPEYIAAFQQVILPMYALDNHGLSRVLILDWDVHHGNGTQAMFYNDPRVLYISVHRYDHGSFFPHSKDAGPHNVGEGKGEGFNVNVAWNKVVDSVLNGESAHGVAIIRPPGHHAEQDEPCGFCIFNNVSVAAKYALDNHGLSRVLILDWDVHHGNGTQAMFYNDPRVLYISVHRYDHGSFFPHSKDAGPHNVGEGKGEGFNVNVAWNKKGMSDPEYIAAFQQVILPIAYQFNPELVLVSAGYDACVNDPLGGCKVSPEAYAHFTHWLKALAQGRIILALEGGYNISSISYAMTLCTKALLGDPLPLLESDLDINSSAVTSIKETISSHKAYWSSLKFLVALPENKLLSADYAQLA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query632 2.2.26 [Sep-21-2011]
Q9UBN7 1215 Histone deacetylase 6 OS= yes N/A 0.392 0.204 0.593 1e-81
Q9Z2V5 1149 Histone deacetylase 6 OS= yes N/A 0.393 0.216 0.56 2e-80
Q6P3E7 666 Histone deacetylase 10 OS no N/A 0.397 0.376 0.482 5e-70
Q969S8 669 Histone deacetylase 10 OS no N/A 0.376 0.355 0.461 2e-68
Q20296 955 Histone deacetylase 6 OS= yes N/A 0.403 0.267 0.488 1e-67
Q8RX28 660 Histone deacetylase 5 OS= yes N/A 0.337 0.322 0.518 8e-65
Q8LRK8 682 Histone deacetylase 18 OS no N/A 0.398 0.369 0.455 8e-65
P830381080 Histone deacetylase 4 OS= no N/A 0.405 0.237 0.460 2e-63
P565241084 Histone deacetylase 4 OS= no N/A 0.427 0.249 0.442 3e-63
Q6NZM91076 Histone deacetylase 4 OS= no N/A 0.431 0.253 0.444 9e-63
>sp|Q9UBN7|HDAC6_HUMAN Histone deacetylase 6 OS=Homo sapiens GN=HDAC6 PE=1 SV=2 Back     alignment and function desciption
 Score =  304 bits (779), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 149/251 (59%), Positives = 188/251 (74%), Gaps = 3/251 (1%)

Query: 367 KVVDSVLNGESAHGVAIIRPPGHHAEQDEPCGFCIFNNVSVAAKYA--LDNHGLSRVLIL 424
           ++V++VL+GE  +G A++RPPGHHAEQD  CGFC FN+V+VAA++A  +  H L R+LI+
Sbjct: 588 RLVEAVLSGEVLNGAAVVRPPGHHAEQDAACGFCFFNSVAVAARHAQTISGHAL-RILIV 646

Query: 425 DWDVHHGNGTQAMFYNDPRVLYISVHRYDHGSFFPHSKDAGPHNVGEGKGEGFNVNVAWN 484
           DWDVHHGNGTQ MF +DP VLY+S+HRYDHG+FFP   +     +G   G GF VNVAWN
Sbjct: 647 DWDVHHGNGTQHMFEDDPSVLYVSLHRYDHGTFFPMGDEGASSQIGRAAGTGFTVNVAWN 706

Query: 485 KKGMSDPEYIAAFQQVILPIAYQFNPELVLVSAGYDACVNDPLGGCKVSPEAYAHFTHWL 544
              M D +Y+AA+ +++LPIAY+FNPELVLVSAG+DA   DPLGGC+VSPE YAH TH L
Sbjct: 707 GPRMGDADYLAAWHRLVLPIAYEFNPELVLVSAGFDAARGDPLGGCQVSPEGYAHLTHLL 766

Query: 545 KALAQGRIILALEGGYNISSISYAMTLCTKALLGDPLPLLESDLDINSSAVTSIKETISS 604
             LA GRIIL LEGGYN++SIS +M  CT++LLGDP PLL       S A+ SI ETI  
Sbjct: 767 MGLASGRIILILEGGYNLTSISESMAACTRSLLGDPPPLLTLPRPPLSGALASITETIQV 826

Query: 605 HKAYWSSLKFL 615
           H+ YW SL+ +
Sbjct: 827 HRRYWRSLRVM 837
In addition to its protein deacetylase activity, plays a key role in the degradation of misfolded proteins: when misfolded proteins are too abundant to be degraded by the chaperone refolding system and the ubiquitin-proteasome, mediates the transport of misfolded proteins to a cytoplasmic juxtanuclear structure called aggresome. Probably acts as an adapter that recognizes polyubiquitinated misfolded proteins and target them to the aggresome, facilitating their clearance by autophagy.
Homo sapiens (taxid: 9606)
EC: 3EC: .EC: 5EC: .EC: 1EC: .EC: 9EC: 8
>sp|Q9Z2V5|HDAC6_MOUSE Histone deacetylase 6 OS=Mus musculus GN=Hdac6 PE=1 SV=3 Back     alignment and function description
>sp|Q6P3E7|HDA10_MOUSE Histone deacetylase 10 OS=Mus musculus GN=Hdac10 PE=2 SV=2 Back     alignment and function description
>sp|Q969S8|HDA10_HUMAN Histone deacetylase 10 OS=Homo sapiens GN=HDAC10 PE=1 SV=1 Back     alignment and function description
>sp|Q20296|HDA6_CAEEL Histone deacetylase 6 OS=Caenorhabditis elegans GN=hda-6 PE=2 SV=2 Back     alignment and function description
>sp|Q8RX28|HDA5_ARATH Histone deacetylase 5 OS=Arabidopsis thaliana GN=HDA5 PE=2 SV=1 Back     alignment and function description
>sp|Q8LRK8|HDA18_ARATH Histone deacetylase 18 OS=Arabidopsis thaliana GN=HDA18 PE=2 SV=1 Back     alignment and function description
>sp|P83038|HDAC4_CHICK Histone deacetylase 4 OS=Gallus gallus GN=HDAC4 PE=2 SV=1 Back     alignment and function description
>sp|P56524|HDAC4_HUMAN Histone deacetylase 4 OS=Homo sapiens GN=HDAC4 PE=1 SV=3 Back     alignment and function description
>sp|Q6NZM9|HDAC4_MOUSE Histone deacetylase 4 OS=Mus musculus GN=Hdac4 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query632
383864231 1169 PREDICTED: histone deacetylase 6-like [M 0.405 0.218 0.682 1e-105
322785610 1170 hypothetical protein SINV_07643 [Solenop 0.395 0.213 0.682 1e-104
345489606 1094 PREDICTED: histone deacetylase 6-like [N 0.319 0.184 0.686 1e-103
307212499 1136 Histone deacetylase 6 [Harpegnathos salt 0.393 0.219 0.686 1e-103
307183184 1165 Histone deacetylase 6 [Camponotus florid 0.367 0.199 0.697 1e-102
242022432 1146 histone deacetylase hda2, putative [Pedi 0.409 0.226 0.655 1e-101
332021768 1204 Histone deacetylase 6 [Acromyrmex echina 0.375 0.196 0.656 1e-100
170052821 1108 histone deacetylase [Culex quinquefascia 0.401 0.229 0.669 1e-100
340718184 1160 PREDICTED: histone deacetylase 6-like [B 0.382 0.208 0.655 1e-100
350400444 1173 PREDICTED: histone deacetylase 6-like [B 0.382 0.206 0.643 1e-100
>gi|383864231|ref|XP_003707583.1| PREDICTED: histone deacetylase 6-like [Megachile rotundata] Back     alignment and taxonomy information
 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 176/258 (68%), Positives = 214/258 (82%)

Query: 367 KVVDSVLNGESAHGVAIIRPPGHHAEQDEPCGFCIFNNVSVAAKYALDNHGLSRVLILDW 426
           +VVDSVLNGES  G+AI+RPPGHHAEQD  CGFCIFNN+S+AA+YA++ H + +VLI+DW
Sbjct: 644 QVVDSVLNGESQSGIAIVRPPGHHAEQDAACGFCIFNNISIAARYAIEFHNIKKVLIVDW 703

Query: 427 DVHHGNGTQAMFYNDPRVLYISVHRYDHGSFFPHSKDAGPHNVGEGKGEGFNVNVAWNKK 486
           DVHHGNGTQA+F  DP+VLYIS+HRYD+G+FFP+SK A    VG G GEGFN+N+ WNKK
Sbjct: 704 DVHHGNGTQAVFEKDPKVLYISIHRYDNGAFFPNSKRANYTYVGSGPGEGFNINIPWNKK 763

Query: 487 GMSDPEYIAAFQQVILPIAYQFNPELVLVSAGYDACVNDPLGGCKVSPEAYAHFTHWLKA 546
           GM D EYIAAFQQV++PIAYQFNPEL+LVSAG+DAC+ DPLGGC V+PE Y H THWL +
Sbjct: 764 GMGDTEYIAAFQQVVMPIAYQFNPELILVSAGFDACIGDPLGGCYVTPEMYGHLTHWLSS 823

Query: 547 LAQGRIILALEGGYNISSISYAMTLCTKALLGDPLPLLESDLDINSSAVTSIKETISSHK 606
           LA GRIIL+LEGGYNI+S+S+AMT+CTK LLGDPLP+LES     +SA+ SI   + S K
Sbjct: 824 LANGRIILSLEGGYNINSVSHAMTICTKTLLGDPLPILESGQIPCTSAIHSINNVLKSLK 883

Query: 607 AYWSSLKFLVALPENKLL 624
            YW +L F V LP+ K+L
Sbjct: 884 QYWPNLMFNVCLPKEKVL 901

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|322785610|gb|EFZ12265.1| hypothetical protein SINV_07643 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|345489606|ref|XP_003426178.1| PREDICTED: histone deacetylase 6-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|307212499|gb|EFN88230.1| Histone deacetylase 6 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|307183184|gb|EFN70093.1| Histone deacetylase 6 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|242022432|ref|XP_002431644.1| histone deacetylase hda2, putative [Pediculus humanus corporis] gi|212516952|gb|EEB18906.1| histone deacetylase hda2, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|332021768|gb|EGI62119.1| Histone deacetylase 6 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|170052821|ref|XP_001862395.1| histone deacetylase [Culex quinquefasciatus] gi|167873617|gb|EDS37000.1| histone deacetylase [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|340718184|ref|XP_003397551.1| PREDICTED: histone deacetylase 6-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|350400444|ref|XP_003485837.1| PREDICTED: histone deacetylase 6-like [Bombus impatiens] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query632
FB|FBgn0026428 1138 HDAC6 "HDAC6" [Drosophila mela 0.393 0.218 0.607 2.3e-129
UNIPROTKB|Q9UBN7 1215 HDAC6 "Histone deacetylase 6" 0.392 0.204 0.593 2.8e-123
UNIPROTKB|B4DZH6 1229 HDAC6 "Histone deacetylase 6" 0.392 0.201 0.593 3.6e-123
UNIPROTKB|F1MQP3 1128 HDAC6 "Uncharacterized protein 0.409 0.229 0.564 7.5e-122
UNIPROTKB|F1PN11 1157 HDAC6 "Uncharacterized protein 0.392 0.214 0.577 1.2e-121
UNIPROTKB|I3LEZ7 1130 HDAC6 "Uncharacterized protein 0.389 0.217 0.590 1.4e-121
UNIPROTKB|F1LSE3 1155 Hdac6 "Protein Hdac6" [Rattus 0.393 0.215 0.568 2.1e-119
ZFIN|ZDB-GENE-030131-3232 1081 hdac6 "histone deacetylase 6" 0.398 0.233 0.544 1.5e-118
MGI|MGI:1333752 1149 Hdac6 "histone deacetylase 6" 0.393 0.216 0.56 2.8e-118
UNIPROTKB|Q20296 955 hda-6 "Histone deacetylase 6" 0.409 0.271 0.492 6.4e-102
FB|FBgn0026428 HDAC6 "HDAC6" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 852 (305.0 bits), Expect = 2.3e-129, Sum P(2) = 2.3e-129
 Identities = 156/257 (60%), Positives = 195/257 (75%)

Query:   367 KVVDSVLNGESAHGVAIIRPPGHHAEQDEPCGFCIFNNVSVAAKYALDNHGLSRVLILDW 426
             + VDSVL GES  G+  +RPPGHHAEQD P GFCIFNNV++AA+YA+ + GL RVLI+DW
Sbjct:   651 QAVDSVLRGESRSGICNVRPPGHHAEQDHPHGFCIFNNVAIAAQYAIRDFGLERVLIVDW 710

Query:   427 DVHHGNGTQAMFYNDPRVLYISVHRYDHGSFFPHSKDAGPHNVGEGKGEGFNVNVAWNKK 486
             DVHHGNGTQ +F ++P+VLYIS+HRY+HGSFFP   D     VG+G G GFNVN+ WNKK
Sbjct:   711 DVHHGNGTQHIFESNPKVLYISLHRYEHGSFFPKGPDGNFDVVGKGAGRGFNVNIPWNKK 770

Query:   487 GMSDPEYIAAFQQVILPIAYQFNPELVLVSAGYDACVNDPLGGCKVSPEAYAHFTHWLKA 546
             GM D EY  AFQQ+I+PIAY+FNP+LVLVSAG+DA + DPLGGCKV+ E Y   THWL A
Sbjct:   771 GMGDLEYALAFQQLIMPIAYEFNPQLVLVSAGFDAAIGDPLGGCKVTAEGYGMLTHWLSA 830

Query:   547 LAQGRIILALEGGYNISSISYAMTLCTKALLGDPLPL-------LESDLDIN-SSAVTSI 598
             LA GRII+ LEGGYN++SISYAMT+CTK LLGDP+P        L+    +   S V S+
Sbjct:   831 LASGRIIVCLEGGYNVNSISYAMTMCTKTLLGDPVPTPQLGATALQKPPTVAFQSCVESL 890

Query:   599 KETISSHKAYWSSLKFL 615
             ++ +   + +W SL+F+
Sbjct:   891 QQCLQVQRNHWRSLEFV 907
GO:0004407 "histone deacetylase activity" evidence=ISS;IDA;NAS
GO:0016575 "histone deacetylation" evidence=IDA
GO:0008270 "zinc ion binding" evidence=IEA
GO:0006355 "regulation of transcription, DNA-dependent" evidence=IDA
GO:0005737 "cytoplasm" evidence=IDA
GO:0006099 "tricarboxylic acid cycle" evidence=IDA
GO:0022904 "respiratory electron transport chain" evidence=IDA
UNIPROTKB|Q9UBN7 HDAC6 "Histone deacetylase 6" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|B4DZH6 HDAC6 "Histone deacetylase 6" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1MQP3 HDAC6 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1PN11 HDAC6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|I3LEZ7 HDAC6 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1LSE3 Hdac6 "Protein Hdac6" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-3232 hdac6 "histone deacetylase 6" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
MGI|MGI:1333752 Hdac6 "histone deacetylase 6" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q20296 hda-6 "Histone deacetylase 6" [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.5.1.980.737
3rd Layer3.5.10.691

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query632
cd10003350 cd10003, HDAC6-dom2, Histone deacetylase 6, domain 1e-148
cd10002336 cd10002, HDAC10_HDAC6-dom1, Histone deacetylase 6, 1e-107
cd09992291 cd09992, HDAC_classII, Histone deacetylases and hi 1e-106
cd11682337 cd11682, HDAC6-dom1, Histone deacetylase 6, domain 1e-105
cd11600313 cd11600, HDAC_Clr3, Class II Histone deacetylase C 1e-104
cd11681377 cd11681, HDAC_classIIa, Histone deacetylases, clas 7e-99
cd11683337 cd11683, HDAC10, Histone deacetylase 10 6e-94
pfam00850300 pfam00850, Hist_deacetyl, Histone deacetylase doma 6e-90
cd10007420 cd10007, HDAC5, Histone deacetylase 5 9e-81
cd10003350 cd10003, HDAC6-dom2, Histone deacetylase 6, domain 3e-79
cd10006409 cd10006, HDAC4, Histone deacetylase 4 1e-78
cd10008378 cd10008, HDAC7, Histone deacetylase 7 9e-77
cd10009379 cd10009, HDAC9, Histone deacetylase 9 8e-76
cd09996359 cd09996, HDAC_classII_1, Histone deacetylases and 2e-70
cd11599288 cd11599, HDAC_classII_2, Histone deacetylases and 4e-69
COG0123340 COG0123, AcuC, Deacetylases, including yeast histo 2e-67
cd09992291 cd09992, HDAC_classII, Histone deacetylases and hi 4e-67
cd10002336 cd10002, HDAC10_HDAC6-dom1, Histone deacetylase 6, 1e-62
cd11682337 cd11682, HDAC6-dom1, Histone deacetylase 6, domain 2e-60
cd11600313 cd11600, HDAC_Clr3, Class II Histone deacetylase C 2e-60
cd10001298 cd10001, HDAC_classII_APAH, Histone deacetylase cl 8e-59
cd11681377 cd11681, HDAC_classIIa, Histone deacetylases, clas 2e-58
pfam00850300 pfam00850, Hist_deacetyl, Histone deacetylase doma 1e-56
cd11683337 cd11683, HDAC10, Histone deacetylase 10 8e-54
cd09301279 cd09301, HDAC, Histone deacetylase (HDAC) classes 2e-52
cd09996359 cd09996, HDAC_classII_1, Histone deacetylases and 7e-49
cd10007420 cd10007, HDAC5, Histone deacetylase 5 6e-48
cd10006409 cd10006, HDAC4, Histone deacetylase 4 1e-46
cd11599288 cd11599, HDAC_classII_2, Histone deacetylases and 4e-46
cd09994313 cd09994, HDAC_AcuC_like, Class I histone deacetyla 5e-45
cd10009379 cd10009, HDAC9, Histone deacetylase 9 2e-44
cd10008378 cd10008, HDAC7, Histone deacetylase 7 3e-44
COG0123340 COG0123, AcuC, Deacetylases, including yeast histo 4e-43
cd10001298 cd10001, HDAC_classII_APAH, Histone deacetylase cl 2e-39
cd10003350 cd10003, HDAC6-dom2, Histone deacetylase 6, domain 1e-36
cd09301279 cd09301, HDAC, Histone deacetylase (HDAC) classes 2e-33
cd09992291 cd09992, HDAC_classII, Histone deacetylases and hi 3e-32
cd10000364 cd10000, HDAC8, Histone deacetylase 8 (HDAC8) 2e-31
cd09994313 cd09994, HDAC_AcuC_like, Class I histone deacetyla 1e-30
cd11682337 cd11682, HDAC6-dom1, Histone deacetylase 6, domain 1e-29
cd11681377 cd11681, HDAC_classIIa, Histone deacetylases, clas 4e-29
cd11600313 cd11600, HDAC_Clr3, Class II Histone deacetylase C 6e-29
cd10002336 cd10002, HDAC10_HDAC6-dom1, Histone deacetylase 6, 3e-28
pfam00850300 pfam00850, Hist_deacetyl, Histone deacetylase doma 4e-28
cd09993275 cd09993, HDAC_classIV, Histone deacetylase class I 5e-28
cd10007420 cd10007, HDAC5, Histone deacetylase 5 1e-26
cd11683337 cd11683, HDAC10, Histone deacetylase 10 2e-26
cd09991306 cd09991, HDAC_classI, Class I histone deacetylases 6e-26
cd09998353 cd09998, HDAC_Hos3, Class II histone deacetylases 6e-26
cd10004375 cd10004, RPD3-like, reduced potassium dependency-3 1e-24
cd09996359 cd09996, HDAC_classII_1, Histone deacetylases and 4e-24
cd10008378 cd10008, HDAC7, Histone deacetylase 7 7e-24
cd10009379 cd10009, HDAC9, Histone deacetylase 9 2e-23
cd10010371 cd10010, HDAC1, Histone deacetylase 1 (HDAC1) 3e-23
cd11598311 cd11598, HDAC_Hos2, Class I histone deacetylases i 7e-23
cd10006409 cd10006, HDAC4, Histone deacetylase 4 8e-23
cd11680294 cd11680, HDAC_Hos1, Class I histone deacetylases H 4e-22
cd10005381 cd10005, HDAC3, Histone deacetylase 3 (HDAC3) 9e-21
cd11599288 cd11599, HDAC_classII_2, Histone deacetylases and 2e-20
cd09991306 cd09991, HDAC_classI, Class I histone deacetylases 2e-20
cd09998353 cd09998, HDAC_Hos3, Class II histone deacetylases 3e-20
PTZ00346429 PTZ00346, PTZ00346, histone deacetylase; Provision 3e-20
cd10001298 cd10001, HDAC_classII_APAH, Histone deacetylase cl 7e-20
cd09993275 cd09993, HDAC_classIV, Histone deacetylase class I 6e-19
COG0123340 COG0123, AcuC, Deacetylases, including yeast histo 7e-19
PTZ00063436 PTZ00063, PTZ00063, histone deacetylase; Provision 9e-19
cd10000364 cd10000, HDAC8, Histone deacetylase 8 (HDAC8) 1e-18
cd10011366 cd10011, HDAC2, Histone deacetylase 2 (HDAC2) 2e-17
cd11598311 cd11598, HDAC_Hos2, Class I histone deacetylases i 8e-17
cd10004375 cd10004, RPD3-like, reduced potassium dependency-3 2e-16
cd09994313 cd09994, HDAC_AcuC_like, Class I histone deacetyla 3e-16
cd10005381 cd10005, HDAC3, Histone deacetylase 3 (HDAC3) 4e-16
cd09301279 cd09301, HDAC, Histone deacetylase (HDAC) classes 2e-15
cd10010371 cd10010, HDAC1, Histone deacetylase 1 (HDAC1) 2e-15
PTZ00063436 PTZ00063, PTZ00063, histone deacetylase; Provision 2e-15
cd11680294 cd11680, HDAC_Hos1, Class I histone deacetylases H 8e-13
PTZ00346429 PTZ00346, PTZ00346, histone deacetylase; Provision 2e-11
cd10011366 cd10011, HDAC2, Histone deacetylase 2 (HDAC2) 3e-11
cd09991306 cd09991, HDAC_classI, Class I histone deacetylases 7e-11
cd10000364 cd10000, HDAC8, Histone deacetylase 8 (HDAC8) 1e-10
pfam0214863 pfam02148, zf-UBP, Zn-finger in ubiquitin-hydrolas 1e-10
cd11598311 cd11598, HDAC_Hos2, Class I histone deacetylases i 5e-09
cd09993275 cd09993, HDAC_classIV, Histone deacetylase class I 1e-08
cd10004375 cd10004, RPD3-like, reduced potassium dependency-3 3e-08
cd09987217 cd09987, Arginase_HDAC, Arginase-like and histone- 3e-08
PTZ00063436 PTZ00063, PTZ00063, histone deacetylase; Provision 7e-08
cd10010371 cd10010, HDAC1, Histone deacetylase 1 (HDAC1) 9e-08
cd10005381 cd10005, HDAC3, Histone deacetylase 3 (HDAC3) 1e-07
cd11680294 cd11680, HDAC_Hos1, Class I histone deacetylases H 2e-07
PTZ00346429 PTZ00346, PTZ00346, histone deacetylase; Provision 3e-07
cd09998353 cd09998, HDAC_Hos3, Class II histone deacetylases 2e-05
cd09987217 cd09987, Arginase_HDAC, Arginase-like and histone- 5e-05
pfam0214863 pfam02148, zf-UBP, Zn-finger in ubiquitin-hydrolas 2e-04
cd10011366 cd10011, HDAC2, Histone deacetylase 2 (HDAC2) 3e-04
cd09987217 cd09987, Arginase_HDAC, Arginase-like and histone- 4e-04
>gnl|CDD|212527 cd10003, HDAC6-dom2, Histone deacetylase 6, domain 2 Back     alignment and domain information 
 Score =  433 bits (1115), Expect = e-148
 Identities = 163/246 (66%), Positives = 198/246 (80%)

Query: 368 VVDSVLNGESAHGVAIIRPPGHHAEQDEPCGFCIFNNVSVAAKYALDNHGLSRVLILDWD 427
           VV++VL GES +GVAI+RPPGHHAEQD  CGFC FNNV++AA+YA   +GL R+LI+DWD
Sbjct: 105 VVEAVLTGESRNGVAIVRPPGHHAEQDTACGFCFFNNVAIAARYAQKKYGLKRILIVDWD 164

Query: 428 VHHGNGTQAMFYNDPRVLYISVHRYDHGSFFPHSKDAGPHNVGEGKGEGFNVNVAWNKKG 487
           VHHGNGTQ MF +DP VLYIS+HRYD+GSFFP+S +     VG+GKGEGFNVN+ WNK G
Sbjct: 165 VHHGNGTQHMFESDPSVLYISLHRYDNGSFFPNSPEGNYDVVGKGKGEGFNVNIPWNKGG 224

Query: 488 MSDPEYIAAFQQVILPIAYQFNPELVLVSAGYDACVNDPLGGCKVSPEAYAHFTHWLKAL 547
           M D EYIAAFQQV+LPIAY+FNPELVLVSAG+DA   DPLGGCKV+PE YAH TH L +L
Sbjct: 225 MGDAEYIAAFQQVVLPIAYEFNPELVLVSAGFDAARGDPLGGCKVTPEGYAHMTHMLMSL 284

Query: 548 AQGRIILALEGGYNISSISYAMTLCTKALLGDPLPLLESDLDINSSAVTSIKETISSHKA 607
           A GR+I+ LEGGYN++SIS +M++CTK LLGDP P+L+      SSA+ SI   +  H+ 
Sbjct: 285 AGGRVIVILEGGYNLTSISESMSMCTKTLLGDPPPVLDLPRPPCSSALKSINNVLQVHQK 344

Query: 608 YWSSLK 613
           YW SL+
Sbjct: 345 YWKSLR 350

Histone deacetylase 6 is a class IIb Zn-dependent enzyme that catalyzes hydrolysis of N(6)-acetyl-lysine residue of a histone to yield a deacetylated histone (EC 3.5.1.98). Histone acetylation/deacetylation process is important for mediation of transcriptional regulation of many genes. HDACs usually act via association with DNA binding proteins to target specific chromatin regions. HDAC6 is the only histone deacetylase with internal duplication of two catalytic domains which appear to function independently of each other, and also has a C-terminal ubiquitin-binding domain. It is located in the cytoplasm and associates with microtubule motor complex, functioning as the tubulin deacetylase and regulating microtubule-dependent cell motility. Known interaction partners of HDAC6 are alpha tubulin and ubiquitin-like modifier FAT10 (also known as Ubiquitin D or UBD). Length = 350
>gnl|CDD|212526 cd10002, HDAC10_HDAC6-dom1, Histone deacetylase 6, domain 1 and histone deacetylase 10 Back     alignment and domain information
>gnl|CDD|212518 cd09992, HDAC_classII, Histone deacetylases and histone-like deacetylases, classII Back     alignment and domain information
>gnl|CDD|212545 cd11682, HDAC6-dom1, Histone deacetylase 6, domain 1 Back     alignment and domain information
>gnl|CDD|212542 cd11600, HDAC_Clr3, Class II Histone deacetylase Clr3 and similar proteins Back     alignment and domain information
>gnl|CDD|212544 cd11681, HDAC_classIIa, Histone deacetylases, class IIa Back     alignment and domain information
>gnl|CDD|212546 cd11683, HDAC10, Histone deacetylase 10 Back     alignment and domain information
>gnl|CDD|216151 pfam00850, Hist_deacetyl, Histone deacetylase domain Back     alignment and domain information
>gnl|CDD|212531 cd10007, HDAC5, Histone deacetylase 5 Back     alignment and domain information
>gnl|CDD|212527 cd10003, HDAC6-dom2, Histone deacetylase 6, domain 2 Back     alignment and domain information
>gnl|CDD|212530 cd10006, HDAC4, Histone deacetylase 4 Back     alignment and domain information
>gnl|CDD|212532 cd10008, HDAC7, Histone deacetylase 7 Back     alignment and domain information
>gnl|CDD|212533 cd10009, HDAC9, Histone deacetylase 9 Back     alignment and domain information
>gnl|CDD|212521 cd09996, HDAC_classII_1, Histone deacetylases and histone-like deacetylases, classII Back     alignment and domain information
>gnl|CDD|212541 cd11599, HDAC_classII_2, Histone deacetylases and histone-like deacetylases, classII Back     alignment and domain information
>gnl|CDD|223201 COG0123, AcuC, Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>gnl|CDD|212518 cd09992, HDAC_classII, Histone deacetylases and histone-like deacetylases, classII Back     alignment and domain information
>gnl|CDD|212526 cd10002, HDAC10_HDAC6-dom1, Histone deacetylase 6, domain 1 and histone deacetylase 10 Back     alignment and domain information
>gnl|CDD|212545 cd11682, HDAC6-dom1, Histone deacetylase 6, domain 1 Back     alignment and domain information
>gnl|CDD|212542 cd11600, HDAC_Clr3, Class II Histone deacetylase Clr3 and similar proteins Back     alignment and domain information
>gnl|CDD|212525 cd10001, HDAC_classII_APAH, Histone deacetylase class IIa Back     alignment and domain information
>gnl|CDD|212544 cd11681, HDAC_classIIa, Histone deacetylases, class IIa Back     alignment and domain information
>gnl|CDD|216151 pfam00850, Hist_deacetyl, Histone deacetylase domain Back     alignment and domain information
>gnl|CDD|212546 cd11683, HDAC10, Histone deacetylase 10 Back     alignment and domain information
>gnl|CDD|212512 cd09301, HDAC, Histone deacetylase (HDAC) classes I, II, IV and related proteins Back     alignment and domain information
>gnl|CDD|212521 cd09996, HDAC_classII_1, Histone deacetylases and histone-like deacetylases, classII Back     alignment and domain information
>gnl|CDD|212531 cd10007, HDAC5, Histone deacetylase 5 Back     alignment and domain information
>gnl|CDD|212530 cd10006, HDAC4, Histone deacetylase 4 Back     alignment and domain information
>gnl|CDD|212541 cd11599, HDAC_classII_2, Histone deacetylases and histone-like deacetylases, classII Back     alignment and domain information
>gnl|CDD|212520 cd09994, HDAC_AcuC_like, Class I histone deacetylase AcuC (Acetoin utilization protein)-like enzymes Back     alignment and domain information
>gnl|CDD|212533 cd10009, HDAC9, Histone deacetylase 9 Back     alignment and domain information
>gnl|CDD|212532 cd10008, HDAC7, Histone deacetylase 7 Back     alignment and domain information
>gnl|CDD|223201 COG0123, AcuC, Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>gnl|CDD|212525 cd10001, HDAC_classII_APAH, Histone deacetylase class IIa Back     alignment and domain information
>gnl|CDD|212527 cd10003, HDAC6-dom2, Histone deacetylase 6, domain 2 Back     alignment and domain information
>gnl|CDD|212512 cd09301, HDAC, Histone deacetylase (HDAC) classes I, II, IV and related proteins Back     alignment and domain information
>gnl|CDD|212518 cd09992, HDAC_classII, Histone deacetylases and histone-like deacetylases, classII Back     alignment and domain information
>gnl|CDD|212524 cd10000, HDAC8, Histone deacetylase 8 (HDAC8) Back     alignment and domain information
>gnl|CDD|212520 cd09994, HDAC_AcuC_like, Class I histone deacetylase AcuC (Acetoin utilization protein)-like enzymes Back     alignment and domain information
>gnl|CDD|212545 cd11682, HDAC6-dom1, Histone deacetylase 6, domain 1 Back     alignment and domain information
>gnl|CDD|212544 cd11681, HDAC_classIIa, Histone deacetylases, class IIa Back     alignment and domain information
>gnl|CDD|212542 cd11600, HDAC_Clr3, Class II Histone deacetylase Clr3 and similar proteins Back     alignment and domain information
>gnl|CDD|212526 cd10002, HDAC10_HDAC6-dom1, Histone deacetylase 6, domain 1 and histone deacetylase 10 Back     alignment and domain information
>gnl|CDD|216151 pfam00850, Hist_deacetyl, Histone deacetylase domain Back     alignment and domain information
>gnl|CDD|212519 cd09993, HDAC_classIV, Histone deacetylase class IV also known as histone deacetylase 11 Back     alignment and domain information
>gnl|CDD|212531 cd10007, HDAC5, Histone deacetylase 5 Back     alignment and domain information
>gnl|CDD|212546 cd11683, HDAC10, Histone deacetylase 10 Back     alignment and domain information
>gnl|CDD|212517 cd09991, HDAC_classI, Class I histone deacetylases Back     alignment and domain information
>gnl|CDD|212522 cd09998, HDAC_Hos3, Class II histone deacetylases Hos3 and related proteins Back     alignment and domain information
>gnl|CDD|212528 cd10004, RPD3-like, reduced potassium dependency-3 (RPD3)-like Back     alignment and domain information
>gnl|CDD|212521 cd09996, HDAC_classII_1, Histone deacetylases and histone-like deacetylases, classII Back     alignment and domain information
>gnl|CDD|212532 cd10008, HDAC7, Histone deacetylase 7 Back     alignment and domain information
>gnl|CDD|212533 cd10009, HDAC9, Histone deacetylase 9 Back     alignment and domain information
>gnl|CDD|212534 cd10010, HDAC1, Histone deacetylase 1 (HDAC1) Back     alignment and domain information
>gnl|CDD|212540 cd11598, HDAC_Hos2, Class I histone deacetylases including ScHos2 and SpPhd1 Back     alignment and domain information
>gnl|CDD|212530 cd10006, HDAC4, Histone deacetylase 4 Back     alignment and domain information
>gnl|CDD|212543 cd11680, HDAC_Hos1, Class I histone deacetylases Hos1 and related proteins Back     alignment and domain information
>gnl|CDD|212529 cd10005, HDAC3, Histone deacetylase 3 (HDAC3) Back     alignment and domain information
>gnl|CDD|212541 cd11599, HDAC_classII_2, Histone deacetylases and histone-like deacetylases, classII Back     alignment and domain information
>gnl|CDD|212517 cd09991, HDAC_classI, Class I histone deacetylases Back     alignment and domain information
>gnl|CDD|212522 cd09998, HDAC_Hos3, Class II histone deacetylases Hos3 and related proteins Back     alignment and domain information
>gnl|CDD|240374 PTZ00346, PTZ00346, histone deacetylase; Provisional Back     alignment and domain information
>gnl|CDD|212525 cd10001, HDAC_classII_APAH, Histone deacetylase class IIa Back     alignment and domain information
>gnl|CDD|212519 cd09993, HDAC_classIV, Histone deacetylase class IV also known as histone deacetylase 11 Back     alignment and domain information
>gnl|CDD|223201 COG0123, AcuC, Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>gnl|CDD|240251 PTZ00063, PTZ00063, histone deacetylase; Provisional Back     alignment and domain information
>gnl|CDD|212524 cd10000, HDAC8, Histone deacetylase 8 (HDAC8) Back     alignment and domain information
>gnl|CDD|212535 cd10011, HDAC2, Histone deacetylase 2 (HDAC2) Back     alignment and domain information
>gnl|CDD|212540 cd11598, HDAC_Hos2, Class I histone deacetylases including ScHos2 and SpPhd1 Back     alignment and domain information
>gnl|CDD|212528 cd10004, RPD3-like, reduced potassium dependency-3 (RPD3)-like Back     alignment and domain information
>gnl|CDD|212520 cd09994, HDAC_AcuC_like, Class I histone deacetylase AcuC (Acetoin utilization protein)-like enzymes Back     alignment and domain information
>gnl|CDD|212529 cd10005, HDAC3, Histone deacetylase 3 (HDAC3) Back     alignment and domain information
>gnl|CDD|212512 cd09301, HDAC, Histone deacetylase (HDAC) classes I, II, IV and related proteins Back     alignment and domain information
>gnl|CDD|212534 cd10010, HDAC1, Histone deacetylase 1 (HDAC1) Back     alignment and domain information
>gnl|CDD|240251 PTZ00063, PTZ00063, histone deacetylase; Provisional Back     alignment and domain information
>gnl|CDD|212543 cd11680, HDAC_Hos1, Class I histone deacetylases Hos1 and related proteins Back     alignment and domain information
>gnl|CDD|240374 PTZ00346, PTZ00346, histone deacetylase; Provisional Back     alignment and domain information
>gnl|CDD|212535 cd10011, HDAC2, Histone deacetylase 2 (HDAC2) Back     alignment and domain information
>gnl|CDD|212517 cd09991, HDAC_classI, Class I histone deacetylases Back     alignment and domain information
>gnl|CDD|212524 cd10000, HDAC8, Histone deacetylase 8 (HDAC8) Back     alignment and domain information
>gnl|CDD|216903 pfam02148, zf-UBP, Zn-finger in ubiquitin-hydrolases and other protein Back     alignment and domain information
>gnl|CDD|212540 cd11598, HDAC_Hos2, Class I histone deacetylases including ScHos2 and SpPhd1 Back     alignment and domain information
>gnl|CDD|212519 cd09993, HDAC_classIV, Histone deacetylase class IV also known as histone deacetylase 11 Back     alignment and domain information
>gnl|CDD|212528 cd10004, RPD3-like, reduced potassium dependency-3 (RPD3)-like Back     alignment and domain information
>gnl|CDD|212513 cd09987, Arginase_HDAC, Arginase-like and histone-like hydrolases Back     alignment and domain information
>gnl|CDD|240251 PTZ00063, PTZ00063, histone deacetylase; Provisional Back     alignment and domain information
>gnl|CDD|212534 cd10010, HDAC1, Histone deacetylase 1 (HDAC1) Back     alignment and domain information
>gnl|CDD|212529 cd10005, HDAC3, Histone deacetylase 3 (HDAC3) Back     alignment and domain information
>gnl|CDD|212543 cd11680, HDAC_Hos1, Class I histone deacetylases Hos1 and related proteins Back     alignment and domain information
>gnl|CDD|240374 PTZ00346, PTZ00346, histone deacetylase; Provisional Back     alignment and domain information
>gnl|CDD|212522 cd09998, HDAC_Hos3, Class II histone deacetylases Hos3 and related proteins Back     alignment and domain information
>gnl|CDD|212513 cd09987, Arginase_HDAC, Arginase-like and histone-like hydrolases Back     alignment and domain information
>gnl|CDD|216903 pfam02148, zf-UBP, Zn-finger in ubiquitin-hydrolases and other protein Back     alignment and domain information
>gnl|CDD|212535 cd10011, HDAC2, Histone deacetylase 2 (HDAC2) Back     alignment and domain information
>gnl|CDD|212513 cd09987, Arginase_HDAC, Arginase-like and histone-like hydrolases Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 632
KOG1343|consensus797 100.0
COG0123340 AcuC Deacetylases, including yeast histone deacety 100.0
PF00850311 Hist_deacetyl: Histone deacetylase domain; InterPr 100.0
PTZ00346429 histone deacetylase; Provisional 100.0
PTZ00063436 histone deacetylase; Provisional 100.0
KOG1342|consensus425 100.0
PF00850311 Hist_deacetyl: Histone deacetylase domain; InterPr 100.0
COG0123340 AcuC Deacetylases, including yeast histone deacety 100.0
PTZ00346429 histone deacetylase; Provisional 100.0
PTZ00063436 histone deacetylase; Provisional 100.0
KOG1342|consensus425 100.0
KOG1343|consensus 797 100.0
KOG1344|consensus324 99.96
KOG1344|consensus324 99.82
PF0214863 zf-UBP: Zn-finger in ubiquitin-hydrolases and othe 99.09
KOG1873|consensus 877 98.43
KOG0804|consensus493 98.35
COG5207749 UBP14 Isopeptidase T [Posttranslational modificati 97.45
cd02669440 Peptidase_C19M A subfamily of Peptidase C19. Pepti 97.36
KOG0944|consensus763 97.33
smart0029050 ZnF_UBP Ubiquitin Carboxyl-terminal Hydrolase-like 97.02
>KOG1343|consensus Back     alignment and domain information 
Probab=100.00  E-value=2e-81  Score=715.08  Aligned_cols=534  Identities=40%  Similarity=0.650  Sum_probs=431.3

Q ss_pred             hHHHHHHHhhhhhhcCCcceeee--cCCcccChhhHHHHHhhhhcc---------cCHHH-HHHHhhccCceeeCCCccc
Q psy8282          61 HLLALLIYLYGVMYVNPMSIIIT--EHPLALSFADLSVWCYVCEAY---------VDNHL-LALLIYLYGVMYVKPMSII  128 (632)
Q Consensus        61 ~~l~qL~~Iy~~L~v~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~---------l~~~~-~~~~~~~~~~~y~~~~~~~  128 (632)
                      +.++++.++.+.+...+...-+.  ..+++++.++++.+  |..++         +..++ ++.....++++|.++    
T Consensus        53 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~v--~~ke~~~~~~~t~~~~~e~~l~~~~~~~~~~~~~~----  126 (797)
T KOG1343|consen   53 EKLERLRQIEEELERHRLEQPLLILRNKREAKESAVASV--HVKEKLQEFLLSKKMTAEEGLNHSSSRYPSLYYTS----  126 (797)
T ss_pred             hhhhHHHHHHHHhhccCCccccccccchhhcccchhccc--ccHHHHHHHHhhhhhcchhhhhcccCCCCcceecC----
Confidence            45666777777776666653332  23466666655544  33322         33333 555566789999999    


Q ss_pred             cCHHHHHHHhcCccccccccCcchhHHHHHHHHcCCCcceeeecCCCCCCCCCCCCCcccccchHHHHHHHHHHhCCCCe
Q psy8282         129 ITEHPLALSFADLSVWGYVCEPYVDNHVVDSVLNGESAHGVAIIRPPGHHAEQDEPCGFCIFNNVSVAAKYALDNHGLSR  208 (632)
Q Consensus       129 ~~~~~~a~~aag~~~~~~~~~~~~~~~~~~~v~~~~~~~a~~~~rppGHHA~~~~~~GFC~~NnvAIAa~~l~~~~g~~r  208 (632)
                       .++..|.++.|+.           ++..+.+..|+..++++.+||||||++++...|||+|||||++++.+..++..+|
T Consensus       127 -~s~~~a~~a~~~~-----------~~~~~~~~~~~~~n~~a~v~p~~hhsep~~~~~~cl~n~Va~~~~~~~~~~~~rr  194 (797)
T KOG1343|consen  127 -ASHSSADQASGSL-----------SGSYKAVLAGKASNGKADFRPPGHHSEPNLKVGFCLFNNVAERRSSPLLRRKKRR  194 (797)
T ss_pred             -CchhhhcccCccc-----------ccccccccCCcccCccCcCCCCCCccccchhcchhHHHHHHHHhhccccccccce
Confidence             8899999999999           8888899999889999999999999999999999999999999999988877899


Q ss_pred             EEEEeccccCCcceeecccC--CCCEEEEeeccCCCCCCCCCCCCCCCCCcCCCCCccceeeccCCCCCCCcHHHHHHHH
Q psy8282         209 VLILDWDVHHGNGTQAMFYN--DPRVLYISVHRYDHGSFFPHSKDAGPHNVGEGKGEGFNVNVAWNKKGMSDPEYIAAFQ  286 (632)
Q Consensus       209 V~IvD~DvHHGnGTq~iF~~--dp~Vl~iSiH~~~~g~fyPg~~~~~~~~~G~g~g~g~~vNipl~~~g~~D~~Yl~~~~  286 (632)
                      |+|+|||+|||+|||..|++  |++|+++|+|++++|.|||+...+.+..+|.|.|.|+++|+|++..|++|.+|.++|.
T Consensus       195 i~i~d~dvh~g~Gtq~~~~~~~d~~vl~~s~~r~e~~~f~P~~~~g~~~~~~~g~~~g~~~nl~~~~~g~~~~dy~~~~~  274 (797)
T KOG1343|consen  195 ILIVDWDVHHGPGTQPSSPNNGDQRVLYFSLHRLETGPFLPNITLGLATLRGGGPGLGQTGNLPWNQVGMTDADYEAAFL  274 (797)
T ss_pred             eEeecccccCCCCCCCccCCCcccccccccchhcccCCcCCCCccchHHHhCcCCCcceeeccchhhcCCcchhhhhhhh
Confidence            99999999999999999999  9999999999999999999999988889999999999999999999999999999999


Q ss_pred             HHHHHHHhh------------ccc------c------------------c--ccc-hhcc--------------------
Q psy8282         287 QVILPMYAL------------DNH------G------------------L--SRV-LILD--------------------  307 (632)
Q Consensus       287 ~~l~p~~~~------------D~~------~------------------l--g~~-l~~~--------------------  307 (632)
                      .+++|...+            |..      .                  +  |++ +.++                    
T Consensus       275 ~~~~~~~~efqp~Lv~~sag~dA~lg~~~~~~m~~tP~~~~~~~~~~~~~~r~~l~v~~e~gy~le~l~~~~~~~~~llg  354 (797)
T KOG1343|consen  275 HVLLPHASEFQPDLLLVSAGFDALLGDGPVGLMAQTPLGYAHRTSMHRPLGRGQLVVVLEGGYFLEKLAQSQLVLNKLLG  354 (797)
T ss_pred             ccCccchhhcCcceEEeeccccccccCcccCcccCCcccHHHHhccccccccCccceecchhHHHHHHHHhhhhHHhhcC
Confidence            999999888            211      0                  1  122 1111                    


Q ss_pred             ------------------------------cccccCCCCccc-----------------------ccC------------
Q psy8282         308 ------------------------------WDVHHGNGTQAM-----------------------FYN------------  322 (632)
Q Consensus       308 ------------------------------w~~~~~~~~~~~-----------------------~~~------------  322 (632)
                                                    |....+.+...-                       +++            
T Consensus       355 ~~~~~~~~~~~p~~~~~e~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (797)
T KOG1343|consen  355 KPIEQLRQPGSPKEEAEEELQSVQAVQEDRWPCEGGSTSADSSALVQDQLEQVGLVKEEDEPVRSDEDGEIGEDELPAAG  434 (797)
T ss_pred             CCccccccCCCchHHHHHHhhhhHHHhhcccccccCCcchhhhhhhhhhhhhhhhhhhccccccCCCCCccccccccchh
Confidence                                          433322211000                       000            


Q ss_pred             -CCcc--------------------e-----eccccc----------------cCCCCC-CCCCCCC--C---Cccc---
Q psy8282         323 -DPRV--------------------L-----YISVHR----------------YDHGSF-FPHSKDA--G---PHNV---  351 (632)
Q Consensus       323 -~~~~--------------------~-----~~~~~~----------------~~~~~l-~vHt~~Y--~---~~~~---  351 (632)
                       ..++                    .     +.++.|                .+.++| .||+..|  .   ...+   
T Consensus       435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~r~~t~~~~gl~~~c~r~at~~el~~vHs~~~~~~~~~~~~~~~~  514 (797)
T KOG1343|consen  435 MQAPFLKQQAEHALSADQAELELAGLDRSRSPESPARFTTGLHTGLLGKCERIATLEELQLVHSEAHVLLYGSRKLLGDL  514 (797)
T ss_pred             cccchhhhhhhhcccccccccccccccccCCcccchhhhcccccccccccccccchhhhhhcccchhhcccchhhhcccc
Confidence             0000                    0     000001                011122 7888888  1   0100   


Q ss_pred             ------cCCCCCccccHHHH----------HHHHHHH--HcCCCcceeEeeCCCCCCCCCCCCCCccccchHHHHHHHHH
Q psy8282         352 ------GEGKGEGFNVNVAW----------NKVVDSV--LNGESAHGVAIIRPPGHHAEQDEPCGFCIFNNVSVAAKYAL  413 (632)
Q Consensus       352 ------~~~~g~~~~s~~s~----------~~av~~v--~~g~~~~afalvRPpGHHA~~~~a~GFC~fNnvAIAa~~~~  413 (632)
                            +...+..+.+.+|+          ..+++.+  +.+++.++||++|||||||.+..++|||+|||+|||+++++
T Consensus       515 ~~~~~~~~~~~~i~~~~dt~~~~~~ssga~~~av~~v~~~~~~~~~g~avvRppGHha~~~~a~gfc~fn~vaiaak~l~  594 (797)
T KOG1343|consen  515 SLKFESRLPCGGIGVDSDTWWNELHSSGAARLAVGCVIELAFKVASGFAVVRPPGHHAEASTAMGFCFFNSVAIAAKLLQ  594 (797)
T ss_pred             cchhhhhccccceeecccHHHHHHHHHHHHHHhcchhhhhhhhhhcceeEecCCccccccCCcceeeeecchhhhhHHhh
Confidence                  00011112222333          5556666  34555668999999999999999999999999999999999


Q ss_pred             HhcCCCeeEEeeeccccCccchhccccCCCeEEEeeccCCCCCCCCCCCCCCCCCcCCCCCCccEEEecCCCCCCChHHH
Q psy8282         414 DNHGLSRVLILDWDVHHGNGTQAMFYNDPRVLYISVHRYDHGSFFPHSKDAGPHNVGEGKGEGFNVNVAWNKKGMSDPEY  493 (632)
Q Consensus       414 ~~~g~~RVlIiD~DvHHGnGTq~iF~~dp~Vl~iSiH~~~~g~~yPgt~~g~~~~~G~g~g~g~~vNvPl~~~g~~D~~Y  493 (632)
                      ..+..+||+|+|||||||||||++|+.||+|+|+|+|++++|.|||++  |..+++|.+.|.|+++||||+.+-.+|.+|
T Consensus       595 ~~~~~~rilivdwDvhhgngtq~~f~~~~~vlyislhr~~~G~~fp~~--g~~~e~g~~~g~g~~vNv~~~~~~~~D~ey  672 (797)
T KOG1343|consen  595 QRSKASRILIVDWDVHHGNGTQQAFYSDPSVLYISLHRHDDGNFFPGS--GAPDEVGKGEGVGFNVNVAWTGGLDPDAEY  672 (797)
T ss_pred             hhhhhcceEEEeecccCCcceeeeeccCccccccccchhccCCcCCCC--CCchhcccccccceeecccccCCCCCCHHH
Confidence            887788999999999999999999999999999999999999999998  778999999999999999998777778999


Q ss_pred             HHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCCCCCCcCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCcchHHHHHHHHH
Q psy8282         494 IAAFQQVILPIAYQFNPELVLVSAGYDACVNDPLGGCKVSPEAYAHFTHWLKALAQGRIILALEGGYNISSISYAMTLCT  573 (632)
Q Consensus       494 l~~~~~vl~p~l~~f~PdlIvvsAGfDa~~~Dplg~~~lt~~~y~~~~~~l~~~a~grvv~vLEGGY~~~~la~~~~~~~  573 (632)
                      +.+|+.+++|+.++|.||+|++|+|||+..+||||+..+|.++|+.+|+.|+.+|+||++++|||||++.++.++...++
T Consensus       673 ~~a~~~vv~Pia~~F~pd~VlvSagfDaa~~dplg~~~vt~~~~~~lt~~l~~lagGRvv~~LEggy~lt~is~s~~~~~  752 (797)
T KOG1343|consen  673 LAAFRTVVMPIAYEFNPDLVLVSAGFDAAEGDPLGGYKVTAECFGYLTQQLMGLAGGRVVLALEGGYDLTAISDSAEACV  752 (797)
T ss_pred             HHHHHHhhHHHHHHhCCCeEEEeccccccccCccccccccHhHHHHHHHHHHHhcCCcEEEEecCCcchhhhhHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCCCCCC---CccccCChhHHHHHHHHHHHHhhccccccc
Q psy8282         574 KALLGDPLPLL---ESDLDINSSAVTSIKETISSHKAYWSSLKF  614 (632)
Q Consensus       574 ~~Llg~~~~~~---~~~~~~~~~~~~~i~~vi~~~~~~W~~~~~  614 (632)
                      ++|+|.+.|.+   ....+|+..+..+++++++.|++||+|++.
T Consensus       753 ~~llg~~~p~~~~~~~~~~~~~~a~~~l~~~~~~~~~~w~~~~~  796 (797)
T KOG1343|consen  753 RALLGDSLPPLSEAYLPQKPNSNAVATLEKVIEVQSKYWSCLQG  796 (797)
T ss_pred             HhccCCCCCCccccccCCCcchHHHHHHHHHHHhhhcccccccC
Confidence            99999888763   233577778999999999999999999875

>COG0123 AcuC Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>PF00850 Hist_deacetyl: Histone deacetylase domain; InterPro: IPR023801 Regulation of transcription is, in part, modulated by reversible histone acetylation on several lysine Back     alignment and domain information
>PTZ00346 histone deacetylase; Provisional Back     alignment and domain information
>PTZ00063 histone deacetylase; Provisional Back     alignment and domain information
>KOG1342|consensus Back     alignment and domain information
>PF00850 Hist_deacetyl: Histone deacetylase domain; InterPro: IPR023801 Regulation of transcription is, in part, modulated by reversible histone acetylation on several lysine Back     alignment and domain information
>COG0123 AcuC Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>PTZ00346 histone deacetylase; Provisional Back     alignment and domain information
>PTZ00063 histone deacetylase; Provisional Back     alignment and domain information
>KOG1342|consensus Back     alignment and domain information
>KOG1343|consensus Back     alignment and domain information
>KOG1344|consensus Back     alignment and domain information
>KOG1344|consensus Back     alignment and domain information
>PF02148 zf-UBP: Zn-finger in ubiquitin-hydrolases and other protein; InterPro: IPR001607 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>KOG1873|consensus Back     alignment and domain information
>KOG0804|consensus Back     alignment and domain information
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02669 Peptidase_C19M A subfamily of Peptidase C19 Back     alignment and domain information
>KOG0944|consensus Back     alignment and domain information
>smart00290 ZnF_UBP Ubiquitin Carboxyl-terminal Hydrolase-like zinc finger Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query632
2vqw_G413 Structure Of Inhibitor-Free Hdac4 Catalytic Domain 3e-65
2vqo_A413 Structure Of Hdac4 Catalytic Domain With A Gain-Of- 3e-65
2vqj_A413 Structure Of Hdac4 Catalytic Domain Bound To A Trif 1e-64
2vqq_A413 Structure Of Hdac4 Catalytic Domain (A Double Cyste 1e-64
3c0y_A423 Crystal Structure Of Catalytic Domain Of Human Hist 5e-60
1zz0_A369 Crystal Structure Of A Hdac-Like Protein With Aceta 1e-36
2vcg_A375 Crystal Structure Of A Hdac-like Protein Hdah From 1e-36
3men_A362 Crystal Structure Of Acetylpolyamine Aminohydrolase 9e-21
3ew8_A388 Crystal Structure Analysis Of Human Hdac8 D101l Var 4e-20
3ezp_A388 Crystal Structure Analysis Of Human Hdac8 D101n Var 4e-20
3mz4_A389 Crystal Structure Of D101l Mn2+ Hdac8 Complexed Wit 4e-20
3ezt_A388 Crystal Structure Analysis Of Human Hdac8 D101e Var 4e-20
3sff_A378 Crystal Structure Of Human Hdac8 Inhibitor Complex, 4e-20
3f06_A388 Crystal Structure Analysis Of Human Hdac8 D101a Var 4e-20
3f07_A388 Crystal Structure Analysis Of Human Hdac8 Complexed 4e-20
2v5x_A388 Crystal Structure Of Hdac8-Inhibitor Complex Length 4e-20
1t64_A377 Crystal Structure Of Human Hdac8 Complexed With Tri 4e-20
3mz3_A389 Crystal Structure Of Co2+ Hdac8 Complexed With M344 4e-20
2v5w_A388 Crystal Structure Of Hdac8-Substrate Complex Length 1e-19
3ewf_A388 Crystal Structure Analysis Of Human Hdac8 H143a Var 4e-19
3q9b_A341 Crystal Structure Of Apah Complexed With M344 Lengt 1e-18
3max_A367 Crystal Structure Of Human Hdac2 Complexed With An 2e-18
1c3r_A375 Crystal Structure Of An Hdac Homolog Complexed With 3e-18
1c3p_A375 Crystal Structure Of An Hdac Homolog From Aquifex A 4e-18
4a69_A376 Structure Of Hdac3 Bound To Corepressor And Inosito 5e-18
3q9c_A341 Crystal Structure Of H159a Apah Complexed With N8-A 1e-17
3c5k_A109 Crystal Structure Of Human Hdac6 Zinc Finger Domain 5e-07
3gv4_A107 Crystal Structure Of Human Hdac6 Zinc Finger Domain 5e-07
2uzg_A97 Zf-Ubp Domain Of Vdu1 Length = 97 7e-04
>pdb|2VQW|G Chain G, Structure Of Inhibitor-Free Hdac4 Catalytic Domain (With Gain-Of-Function Mutation His332tyr) Length = 413 Back     alignment and structure 
Iteration: 1

 Score =  246 bits (628), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 132/299 (44%), Positives = 178/299 (59%), Gaps = 26/299 (8%)
Query: 356 GEGFNVNVAWNKV----------------VDSVLNGESAHGVAIIRPPGHHAEQDEPCGF 399
           G G + +  WN+V                V  V  GE  +G A++RPPGHHAE+  P GF
Sbjct: 109 GVGVDSDTIWNEVHSAGAARLAVGCVVELVFKVATGELKNGFAVVRPPGHHAEESTPMGF 168
Query: 400 CIFNNVSVAAKYALDNHGLSRVLILDWDVHHGNGTQAMFYNDPRVLYISVHRYDHGSFFP 459
           C FN+V+VAAK       +S++LI+DWDVHHGNGTQ  FY+DP VLY+S+HRYD G+FFP
Sbjct: 169 CYFNSVAVAAKLLQQRLSVSKILIVDWDVHHGNGTQQAFYSDPSVLYMSLHRYDDGNFFP 228
Query: 460 HSKDAGPHNVGEGKGEGFNVNVAWN---KKGMSDPEYIAAFQQVILPIAYQFNPELVLVS 516
            S    P  VG G G GFNVN+A+       M D EY+AAF+ V++PIA +F P++VLVS
Sbjct: 229 GS--GAPDEVGTGPGVGFNVNMAFTGGLDPPMGDAEYLAAFRTVVMPIASEFAPDVVLVS 286
Query: 517 AGYDACVN--DPLGGCKVSPEAYAHFTHWLKALAQGRIILALEGGYNISSISYAMTLCTK 574
           +G+DA      PLGG  +S   + + T  L  LA GRI+LALEGGY++++I  A   C  
Sbjct: 287 SGFDAVEGHPTPLGGYNLSARCFGYLTKQLMGLAGGRIVLALEGGYDLTAICDASEACVS 346
Query: 575 ALLG---DPLPLLESDLDINSSAVTSIKETISSHKAYWSSLKFLVALPENKLLSADYAQ 630
           ALLG   DPLP        N++AV S+++ +  H  YW  L+   +     L+ A   +
Sbjct: 347 ALLGNELDPLPEKVLQQRPNANAVRSMEKVMEIHSKYWRCLQRTTSTAGRSLIEAQTCE 405
>pdb|2VQO|A Chain A, Structure Of Hdac4 Catalytic Domain With A Gain-Of-Function Muation Bound To A Trifluoromethylketone Inhbitor Length = 413 Back     alignment and structure
>pdb|2VQJ|A Chain A, Structure Of Hdac4 Catalytic Domain Bound To A Trifluoromethylketone Inhbitor Length = 413 Back     alignment and structure
>pdb|2VQQ|A Chain A, Structure Of Hdac4 Catalytic Domain (A Double Cysteine-To- Alanine Mutant) Bound To A Trifluoromethylketone Inhbitor Length = 413 Back     alignment and structure
>pdb|3C0Y|A Chain A, Crystal Structure Of Catalytic Domain Of Human Histone Deacetylase Hdac7 Length = 423 Back     alignment and structure
>pdb|1ZZ0|A Chain A, Crystal Structure Of A Hdac-Like Protein With Acetate Bound Length = 369 Back     alignment and structure
>pdb|2VCG|A Chain A, Crystal Structure Of A Hdac-like Protein Hdah From Bordetella Sp. With The Bound Inhibitor St-17 Length = 375 Back     alignment and structure
>pdb|3MEN|A Chain A, Crystal Structure Of Acetylpolyamine Aminohydrolase From Burkholderia Pseudomallei, Iodide Soak Length = 362 Back     alignment and structure
>pdb|3EW8|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101l Variant Length = 388 Back     alignment and structure
>pdb|3EZP|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101n Variant Length = 388 Back     alignment and structure
>pdb|3MZ4|A Chain A, Crystal Structure Of D101l Mn2+ Hdac8 Complexed With M344 Length = 389 Back     alignment and structure
>pdb|3EZT|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101e Variant Length = 388 Back     alignment and structure
>pdb|3SFF|A Chain A, Crystal Structure Of Human Hdac8 Inhibitor Complex, An Amino Acid Derived Inhibitor Length = 378 Back     alignment and structure
>pdb|3F06|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101a Variant. Length = 388 Back     alignment and structure
>pdb|3F07|A Chain A, Crystal Structure Analysis Of Human Hdac8 Complexed With Apha In A New Monoclinic Crystal Form Length = 388 Back     alignment and structure
>pdb|2V5X|A Chain A, Crystal Structure Of Hdac8-Inhibitor Complex Length = 388 Back     alignment and structure
>pdb|1T64|A Chain A, Crystal Structure Of Human Hdac8 Complexed With Trichostatin A Length = 377 Back     alignment and structure
>pdb|3MZ3|A Chain A, Crystal Structure Of Co2+ Hdac8 Complexed With M344 Length = 389 Back     alignment and structure
>pdb|2V5W|A Chain A, Crystal Structure Of Hdac8-Substrate Complex Length = 388 Back     alignment and structure
>pdb|3EWF|A Chain A, Crystal Structure Analysis Of Human Hdac8 H143a Variant Complexed With Substrate. Length = 388 Back     alignment and structure
>pdb|3Q9B|A Chain A, Crystal Structure Of Apah Complexed With M344 Length = 341 Back     alignment and structure
>pdb|3MAX|A Chain A, Crystal Structure Of Human Hdac2 Complexed With An N-(2-Amin Benzamide Length = 367 Back     alignment and structure
>pdb|1C3R|A Chain A, Crystal Structure Of An Hdac Homolog Complexed With Trichostatin A Length = 375 Back     alignment and structure
>pdb|1C3P|A Chain A, Crystal Structure Of An Hdac Homolog From Aquifex Aeolicus Length = 375 Back     alignment and structure
>pdb|4A69|A Chain A, Structure Of Hdac3 Bound To Corepressor And Inositol Tetraphosphate Length = 376 Back     alignment and structure
>pdb|3Q9C|A Chain A, Crystal Structure Of H159a Apah Complexed With N8-Acetylspermidine Length = 341 Back     alignment and structure
>pdb|3C5K|A Chain A, Crystal Structure Of Human Hdac6 Zinc Finger Domain Length = 109 Back     alignment and structure
>pdb|3GV4|A Chain A, Crystal Structure Of Human Hdac6 Zinc Finger Domain And Ubiquitin C-Terminal Peptide Rlrgg Length = 107 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query632
2pqp_A421 HD7A, histone deacetylase 7A; HDAC, structural gen 1e-124
2pqp_A421 HD7A, histone deacetylase 7A; HDAC, structural gen 4e-71
1zz1_A369 Histone deacetylase-like amidohydrolase; HET: SHH; 1e-111
1zz1_A369 Histone deacetylase-like amidohydrolase; HET: SHH; 3e-67
1zz1_A369 Histone deacetylase-like amidohydrolase; HET: SHH; 9e-32
3men_A362 Acetylpolyamine aminohydrolase; histone deacetylas 1e-89
3men_A362 Acetylpolyamine aminohydrolase; histone deacetylas 2e-56
3men_A362 Acetylpolyamine aminohydrolase; histone deacetylas 2e-26
3q9b_A341 Acetylpolyamine amidohydrolase; HDAC, polyamines, 5e-85
3q9b_A341 Acetylpolyamine amidohydrolase; HDAC, polyamines, 7e-53
3q9b_A341 Acetylpolyamine amidohydrolase; HDAC, polyamines, 3e-25
1c3p_A375 Protein (HDLP (histone deacetylase-like protein) ) 6e-83
1c3p_A375 Protein (HDLP (histone deacetylase-like protein) ) 2e-48
1c3p_A375 Protein (HDLP (histone deacetylase-like protein) ) 1e-24
3max_A367 HD2, histone deacetylase 2; class 2, HDAC, foot po 8e-82
3max_A367 HD2, histone deacetylase 2; class 2, HDAC, foot po 1e-47
3max_A367 HD2, histone deacetylase 2; class 2, HDAC, foot po 2e-23
3ew8_A388 HD8, histone deacetylase 8; hydrolase, HDAC, metal 5e-81
3ew8_A388 HD8, histone deacetylase 8; hydrolase, HDAC, metal 7e-48
3ew8_A388 HD8, histone deacetylase 8; hydrolase, HDAC, metal 7e-24
4a69_A376 Histone deacetylase 3,; transcription, hydrolase; 1e-79
4a69_A376 Histone deacetylase 3,; transcription, hydrolase; 7e-46
4a69_A376 Histone deacetylase 3,; transcription, hydrolase; 5e-22
3c5k_A109 HD6, histone deacetylase 6; HDAC6, zinc finger, ac 1e-11
3c5k_A109 HD6, histone deacetylase 6; HDAC6, zinc finger, ac 2e-05
2uzg_A97 Ubiquitin carboxyl-terminal hydrolase 33; UBL conj 9e-11
2uzg_A97 Ubiquitin carboxyl-terminal hydrolase 33; UBL conj 2e-05
2ida_A102 Hypothetical protein; zinc binding protein, struct 4e-09
2i50_A126 Ubiquitin carboxyl-terminal hydrolase 16; alpha/be 2e-08
2i50_A126 Ubiquitin carboxyl-terminal hydrolase 16; alpha/be 2e-05
2g45_A129 Ubiquitin carboxyl-terminal hydrolase 5; zinc fing 2e-07
>1zz1_A Histone deacetylase-like amidohydrolase; HET: SHH; 1.57A {Alcaligenaceae bacterium} PDB: 1zz0_A* 1zz3_A* 2gh6_A* 2vcg_A* Length = 369 Back     alignment and structure
>1zz1_A Histone deacetylase-like amidohydrolase; HET: SHH; 1.57A {Alcaligenaceae bacterium} PDB: 1zz0_A* 1zz3_A* 2gh6_A* 2vcg_A* Length = 369 Back     alignment and structure
>1zz1_A Histone deacetylase-like amidohydrolase; HET: SHH; 1.57A {Alcaligenaceae bacterium} PDB: 1zz0_A* 1zz3_A* 2gh6_A* 2vcg_A* Length = 369 Back     alignment and structure
>3men_A Acetylpolyamine aminohydrolase; histone deacetylase; 2.20A {Burkholderia pseudomallei 1710B} Length = 362 Back     alignment and structure
>3men_A Acetylpolyamine aminohydrolase; histone deacetylase; 2.20A {Burkholderia pseudomallei 1710B} Length = 362 Back     alignment and structure
>3men_A Acetylpolyamine aminohydrolase; histone deacetylase; 2.20A {Burkholderia pseudomallei 1710B} Length = 362 Back     alignment and structure
>3q9b_A Acetylpolyamine amidohydrolase; HDAC, polyamines, arginase fold, deacetylase, hydrolase-HYDR inhibitor complex; HET: B3N; 2.25A {Mycoplana ramosa} PDB: 3q9f_A* 3q9c_A* 3q9e_A* Length = 341 Back     alignment and structure
>3q9b_A Acetylpolyamine amidohydrolase; HDAC, polyamines, arginase fold, deacetylase, hydrolase-HYDR inhibitor complex; HET: B3N; 2.25A {Mycoplana ramosa} PDB: 3q9f_A* 3q9c_A* 3q9e_A* Length = 341 Back     alignment and structure
>3q9b_A Acetylpolyamine amidohydrolase; HDAC, polyamines, arginase fold, deacetylase, hydrolase-HYDR inhibitor complex; HET: B3N; 2.25A {Mycoplana ramosa} PDB: 3q9f_A* 3q9c_A* 3q9e_A* Length = 341 Back     alignment and structure
>1c3p_A Protein (HDLP (histone deacetylase-like protein) ); alpha/beta fold, lyase; 1.80A {Aquifex aeolicus} SCOP: c.42.1.2 PDB: 1c3r_A* 1c3s_A* Length = 375 Back     alignment and structure
>1c3p_A Protein (HDLP (histone deacetylase-like protein) ); alpha/beta fold, lyase; 1.80A {Aquifex aeolicus} SCOP: c.42.1.2 PDB: 1c3r_A* 1c3s_A* Length = 375 Back     alignment and structure
>1c3p_A Protein (HDLP (histone deacetylase-like protein) ); alpha/beta fold, lyase; 1.80A {Aquifex aeolicus} SCOP: c.42.1.2 PDB: 1c3r_A* 1c3s_A* Length = 375 Back     alignment and structure
>3max_A HD2, histone deacetylase 2; class 2, HDAC, foot pocket, hydrolase; HET: LLX NHE; 2.05A {Homo sapiens} Length = 367 Back     alignment and structure
>3max_A HD2, histone deacetylase 2; class 2, HDAC, foot pocket, hydrolase; HET: LLX NHE; 2.05A {Homo sapiens} Length = 367 Back     alignment and structure
>3max_A HD2, histone deacetylase 2; class 2, HDAC, foot pocket, hydrolase; HET: LLX NHE; 2.05A {Homo sapiens} Length = 367 Back     alignment and structure
>3ew8_A HD8, histone deacetylase 8; hydrolase, HDAC, metalloenzyme, arginase fold, HDAC8, histon deacetylase, hydroxamate inhibitor, unliganded; HET: B3N; 1.80A {Homo sapiens} PDB: 3f06_A* 3ezp_A* 3ezt_A* 3f0r_A* 3f07_A* 2v5w_A* 2v5x_A* 3ewf_A* 3mz4_A* 3mz6_A* 3mz7_A* 3rqd_A* 3mz3_A* 1t64_A* 1t67_A* 1t69_A* 1vkg_A* 1w22_A* 3sff_A* 3sfh_A* Length = 388 Back     alignment and structure
>3ew8_A HD8, histone deacetylase 8; hydrolase, HDAC, metalloenzyme, arginase fold, HDAC8, histon deacetylase, hydroxamate inhibitor, unliganded; HET: B3N; 1.80A {Homo sapiens} PDB: 3f06_A* 3ezp_A* 3ezt_A* 3f0r_A* 3f07_A* 2v5w_A* 2v5x_A* 3ewf_A* 3mz4_A* 3mz6_A* 3mz7_A* 3rqd_A* 3mz3_A* 1t64_A* 1t67_A* 1t69_A* 1vkg_A* 1w22_A* 3sff_A* 3sfh_A* Length = 388 Back     alignment and structure
>3ew8_A HD8, histone deacetylase 8; hydrolase, HDAC, metalloenzyme, arginase fold, HDAC8, histon deacetylase, hydroxamate inhibitor, unliganded; HET: B3N; 1.80A {Homo sapiens} PDB: 3f06_A* 3ezp_A* 3ezt_A* 3f0r_A* 3f07_A* 2v5w_A* 2v5x_A* 3ewf_A* 3mz4_A* 3mz6_A* 3mz7_A* 3rqd_A* 3mz3_A* 1t64_A* 1t67_A* 1t69_A* 1vkg_A* 1w22_A* 3sff_A* 3sfh_A* Length = 388 Back     alignment and structure
>4a69_A Histone deacetylase 3,; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} Length = 376 Back     alignment and structure
>4a69_A Histone deacetylase 3,; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} Length = 376 Back     alignment and structure
>4a69_A Histone deacetylase 3,; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} Length = 376 Back     alignment and structure
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A Length = 109 Back     alignment and structure
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A Length = 109 Back     alignment and structure
>2ida_A Hypothetical protein; zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: g.44.1.5 Length = 102 Back     alignment and structure
>2i50_A Ubiquitin carboxyl-terminal hydrolase 16; alpha/beta zinc-finger, ring-finger, ZNF-UBP, metalloprotein, ubiquitin-binding protein, USP; NMR {Homo sapiens} Length = 126 Back     alignment and structure
>2i50_A Ubiquitin carboxyl-terminal hydrolase 16; alpha/beta zinc-finger, ring-finger, ZNF-UBP, metalloprotein, ubiquitin-binding protein, USP; NMR {Homo sapiens} Length = 126 Back     alignment and structure
>2g45_A Ubiquitin carboxyl-terminal hydrolase 5; zinc finger, hydrolase; 1.99A {Homo sapiens} SCOP: g.44.1.5 PDB: 2g43_A 2l80_A Length = 129 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query632
2pqp_A421 HD7A, histone deacetylase 7A; HDAC, structural gen 100.0
2vqm_A413 HD4, histone deacetylase 4; inhibitor, repressor, 100.0
1zz1_A369 Histone deacetylase-like amidohydrolase; HET: SHH; 100.0
3q9b_A341 Acetylpolyamine amidohydrolase; HDAC, polyamines, 100.0
3men_A362 Acetylpolyamine aminohydrolase; histone deacetylas 100.0
3ew8_A388 HD8, histone deacetylase 8; hydrolase, HDAC, metal 100.0
4a69_A376 Histone deacetylase 3,; transcription, hydrolase; 100.0
1c3p_A375 Protein (HDLP (histone deacetylase-like protein) ) 100.0
3max_A367 HD2, histone deacetylase 2; class 2, HDAC, foot po 100.0
1zz1_A369 Histone deacetylase-like amidohydrolase; HET: SHH; 100.0
2pqp_A421 HD7A, histone deacetylase 7A; HDAC, structural gen 100.0
3q9b_A341 Acetylpolyamine amidohydrolase; HDAC, polyamines, 100.0
3men_A362 Acetylpolyamine aminohydrolase; histone deacetylas 100.0
2vqm_A413 HD4, histone deacetylase 4; inhibitor, repressor, 100.0
3ew8_A388 HD8, histone deacetylase 8; hydrolase, HDAC, metal 100.0
4a69_A376 Histone deacetylase 3,; transcription, hydrolase; 100.0
1c3p_A375 Protein (HDLP (histone deacetylase-like protein) ) 100.0
3max_A367 HD2, histone deacetylase 2; class 2, HDAC, foot po 100.0
2i50_A126 Ubiquitin carboxyl-terminal hydrolase 16; alpha/be 99.3
3c5k_A109 HD6, histone deacetylase 6; HDAC6, zinc finger, ac 99.27
2uzg_A97 Ubiquitin carboxyl-terminal hydrolase 33; UBL conj 99.18
2ida_A102 Hypothetical protein; zinc binding protein, struct 99.17
2g45_A129 Ubiquitin carboxyl-terminal hydrolase 5; zinc fing 99.11
3ihp_A854 Ubiquitin carboxyl-terminal hydrolase 5; hydrolase 98.28
3mhs_A476 Ubiquitin carboxyl-terminal hydrolase 8; multi-pro 98.11
>2vqm_A HD4, histone deacetylase 4; inhibitor, repressor, chromatin, coiled coil, transcription regulation, UBL conjugation, chromatin regulator; HET: HA3; 1.8A {Homo sapiens} PDB: 2vqj_A* 2vqw_G 2vqq_A* 2vqo_A* 2vqv_A* 3c10_A* 3c0z_A 3c0y_A* Back     alignment and structure
>1zz1_A Histone deacetylase-like amidohydrolase; HET: SHH; 1.57A {Alcaligenaceae bacterium} PDB: 1zz0_A* 1zz3_A* 2gh6_A* 2vcg_A* Back     alignment and structure
>3q9b_A Acetylpolyamine amidohydrolase; HDAC, polyamines, arginase fold, deacetylase, hydrolase-HYDR inhibitor complex; HET: B3N; 2.25A {Mycoplana ramosa} PDB: 3q9f_A* 3q9c_A* 3q9e_A* Back     alignment and structure
>3men_A Acetylpolyamine aminohydrolase; histone deacetylase; 2.20A {Burkholderia pseudomallei 1710B} Back     alignment and structure
>3ew8_A HD8, histone deacetylase 8; hydrolase, HDAC, metalloenzyme, arginase fold, HDAC8, histon deacetylase, hydroxamate inhibitor, unliganded; HET: B3N; 1.80A {Homo sapiens} SCOP: c.42.1.2 PDB: 3f06_A* 3ezp_A* 3ezt_A* 3f0r_A* 3f07_A* 2v5w_A* 2v5x_A* 3ewf_A* 3mz4_A* 3mz6_A* 3mz7_A* 3rqd_A* 3mz3_A* 1t64_A* 1t67_A* 1t69_A* 1vkg_A* 1w22_A* 3sff_A* 3sfh_A* Back     alignment and structure
>4a69_A Histone deacetylase 3,; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} Back     alignment and structure
>1c3p_A Protein (HDLP (histone deacetylase-like protein) ); alpha/beta fold, lyase; 1.80A {Aquifex aeolicus} SCOP: c.42.1.2 PDB: 1c3r_A* 1c3s_A* Back     alignment and structure
>3max_A HD2, histone deacetylase 2; class 2, HDAC, foot pocket, hydrolase; HET: LLX NHE; 2.05A {Homo sapiens} Back     alignment and structure
>1zz1_A Histone deacetylase-like amidohydrolase; HET: SHH; 1.57A {Alcaligenaceae bacterium} PDB: 1zz0_A* 1zz3_A* 2gh6_A* 2vcg_A* Back     alignment and structure
>3q9b_A Acetylpolyamine amidohydrolase; HDAC, polyamines, arginase fold, deacetylase, hydrolase-HYDR inhibitor complex; HET: B3N; 2.25A {Mycoplana ramosa} PDB: 3q9f_A* 3q9c_A* 3q9e_A* Back     alignment and structure
>3men_A Acetylpolyamine aminohydrolase; histone deacetylase; 2.20A {Burkholderia pseudomallei 1710B} Back     alignment and structure
>2vqm_A HD4, histone deacetylase 4; inhibitor, repressor, chromatin, coiled coil, transcription regulation, UBL conjugation, chromatin regulator; HET: HA3; 1.8A {Homo sapiens} PDB: 2vqj_A* 2vqw_G 2vqq_A* 2vqo_A* 2vqv_A* 3c10_A* 3c0z_A 3c0y_A* Back     alignment and structure
>3ew8_A HD8, histone deacetylase 8; hydrolase, HDAC, metalloenzyme, arginase fold, HDAC8, histon deacetylase, hydroxamate inhibitor, unliganded; HET: B3N; 1.80A {Homo sapiens} SCOP: c.42.1.2 PDB: 3f06_A* 3ezp_A* 3ezt_A* 3f0r_A* 3f07_A* 2v5w_A* 2v5x_A* 3ewf_A* 3mz4_A* 3mz6_A* 3mz7_A* 3rqd_A* 3mz3_A* 1t64_A* 1t67_A* 1t69_A* 1vkg_A* 1w22_A* 3sff_A* 3sfh_A* Back     alignment and structure
>4a69_A Histone deacetylase 3,; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} Back     alignment and structure
>1c3p_A Protein (HDLP (histone deacetylase-like protein) ); alpha/beta fold, lyase; 1.80A {Aquifex aeolicus} SCOP: c.42.1.2 PDB: 1c3r_A* 1c3s_A* Back     alignment and structure
>3max_A HD2, histone deacetylase 2; class 2, HDAC, foot pocket, hydrolase; HET: LLX NHE; 2.05A {Homo sapiens} Back     alignment and structure
>2i50_A Ubiquitin carboxyl-terminal hydrolase 16; alpha/beta zinc-finger, ring-finger, ZNF-UBP, metalloprotein, ubiquitin-binding protein, USP; NMR {Homo sapiens} Back     alignment and structure
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A Back     alignment and structure
>2ida_A Hypothetical protein; zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: g.44.1.5 Back     alignment and structure
>2g45_A Ubiquitin carboxyl-terminal hydrolase 5; zinc finger, hydrolase; 1.99A {Homo sapiens} SCOP: g.44.1.5 PDB: 2g43_A 2l80_A Back     alignment and structure
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Back     alignment and structure
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 632
d3c10a1386 c.42.1.2 (A:515-900) Histone deacetylase 7, HDAC7 2e-49
d3c10a1386 c.42.1.2 (A:515-900) Histone deacetylase 7, HDAC7 2e-15
d1t64a_364 c.42.1.2 (A:) Histone deacetylase 8, HDAC8 {Human 2e-37
d1t64a_364 c.42.1.2 (A:) Histone deacetylase 8, HDAC8 {Human 3e-11
d1t64a_364 c.42.1.2 (A:) Histone deacetylase 8, HDAC8 {Human 3e-05
d1c3pa_372 c.42.1.2 (A:) HDAC homologue {Aquifex aeolicus [Ta 6e-34
d1c3pa_372 c.42.1.2 (A:) HDAC homologue {Aquifex aeolicus [Ta 9e-10
d1c3pa_372 c.42.1.2 (A:) HDAC homologue {Aquifex aeolicus [Ta 2e-05
d2uzga195 g.44.1.5 (A:36-130) Ubiquitin carboxyl-terminal hy 1e-10
d2uzga195 g.44.1.5 (A:36-130) Ubiquitin carboxyl-terminal hy 3e-05
d2idaa1102 g.44.1.5 (A:1-102) Hypothetical protein RPA1320 {R 9e-08
d2g45a1113 g.44.1.5 (A:173-285) Ubiquitin carboxyl-terminal h 2e-05
>d3c10a1 c.42.1.2 (A:515-900) Histone deacetylase 7, HDAC7 {Human (Homo sapiens) [TaxId: 9606]} Length = 386 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Arginase/deacetylase
superfamily: Arginase/deacetylase
family: Histone deacetylase, HDAC
domain: Histone deacetylase 7, HDAC7
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  174 bits (441), Expect = 2e-49
 Identities = 118/248 (47%), Positives = 159/248 (64%), Gaps = 10/248 (4%)

Query: 374 NGESAHGVAIIRPPGHHAEQDEPCGFCIFNNVSVAAKYALDNHGLSRVLILDWDVHHGNG 433
           + E  +G A++RPPGHHA+     GFC FN+V++A +        S++LI+DWDVHHGNG
Sbjct: 140 SRELKNGFAVVRPPGHHADHSTAMGFCFFNSVAIACRQLQQQSKASKILIVDWDVHHGNG 199

Query: 434 TQAMFYNDPRVLYISVHRYDHGSFFPHSKDAGPHNVGEGKGEGFNVNVAWNKK---GMSD 490
           TQ  FY DP VLYIS+HR+D G+FFP S       VG G GEGFNVNVAW       M D
Sbjct: 200 TQQTFYQDPSVLYISLHRHDDGNFFPGSGAV--DEVGAGSGEGFNVNVAWAGGLDPPMGD 257

Query: 491 PEYIAAFQQVILPIAYQFNPELVLVSAGYDACVND--PLGGCKVSPEAYAHFTHWLKALA 548
           PEY+AAF+ V++PIA +F+P+LVLVSAG+DA      PLGG  VS + + + T  L  LA
Sbjct: 258 PEYLAAFRIVVMPIAREFSPDLVLVSAGFDAAEGHPAPLGGYHVSAKCFGYMTQQLMNLA 317

Query: 549 QGRIILALEGGYNISSISYAMTLCTKALLGDPL-PLLESDLD--INSSAVTSIKETISSH 605
            G ++LALEGG+++++I  A   C  ALLG+ + PL E       N +A+ S++  I  H
Sbjct: 318 GGAVVLALEGGHDLTAICDASEACVAALLGNRVDPLSEEGWKQKPNLNAIRSLEAVIRVH 377

Query: 606 KAYWSSLK 613
             YW  ++
Sbjct: 378 SKYWGCMQ 385
>d3c10a1 c.42.1.2 (A:515-900) Histone deacetylase 7, HDAC7 {Human (Homo sapiens) [TaxId: 9606]} Length = 386 Back     information, alignment and structure
>d1t64a_ c.42.1.2 (A:) Histone deacetylase 8, HDAC8 {Human (Homo sapiens) [TaxId: 9606]} Length = 364 Back     information, alignment and structure
>d1t64a_ c.42.1.2 (A:) Histone deacetylase 8, HDAC8 {Human (Homo sapiens) [TaxId: 9606]} Length = 364 Back     information, alignment and structure
>d1t64a_ c.42.1.2 (A:) Histone deacetylase 8, HDAC8 {Human (Homo sapiens) [TaxId: 9606]} Length = 364 Back     information, alignment and structure
>d1c3pa_ c.42.1.2 (A:) HDAC homologue {Aquifex aeolicus [TaxId: 63363]} Length = 372 Back     information, alignment and structure
>d1c3pa_ c.42.1.2 (A:) HDAC homologue {Aquifex aeolicus [TaxId: 63363]} Length = 372 Back     information, alignment and structure
>d1c3pa_ c.42.1.2 (A:) HDAC homologue {Aquifex aeolicus [TaxId: 63363]} Length = 372 Back     information, alignment and structure
>d2uzga1 g.44.1.5 (A:36-130) Ubiquitin carboxyl-terminal hydrolase 33, UBP33 {Human (Homo sapiens) [TaxId: 9606]} Length = 95 Back     information, alignment and structure
>d2uzga1 g.44.1.5 (A:36-130) Ubiquitin carboxyl-terminal hydrolase 33, UBP33 {Human (Homo sapiens) [TaxId: 9606]} Length = 95 Back     information, alignment and structure
>d2idaa1 g.44.1.5 (A:1-102) Hypothetical protein RPA1320 {Rhodopseudomonas palustris [TaxId: 1076]} Length = 102 Back     information, alignment and structure
>d2g45a1 g.44.1.5 (A:173-285) Ubiquitin carboxyl-terminal hydrolase 5, UBP5 {Human (Homo sapiens) [TaxId: 9606]} Length = 113 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query632
d3c10a1386 Histone deacetylase 7, HDAC7 {Human (Homo sapiens) 100.0
d1t64a_364 Histone deacetylase 8, HDAC8 {Human (Homo sapiens) 100.0
d1c3pa_372 HDAC homologue {Aquifex aeolicus [TaxId: 63363]} 100.0
d3c10a1386 Histone deacetylase 7, HDAC7 {Human (Homo sapiens) 100.0
d1t64a_364 Histone deacetylase 8, HDAC8 {Human (Homo sapiens) 100.0
d1c3pa_372 HDAC homologue {Aquifex aeolicus [TaxId: 63363]} 100.0
d2uzga195 Ubiquitin carboxyl-terminal hydrolase 33, UBP33 {H 99.33
d2g45a1113 Ubiquitin carboxyl-terminal hydrolase 5, UBP5 {Hum 99.18
d2idaa1102 Hypothetical protein RPA1320 {Rhodopseudomonas pal 99.16
>d3c10a1 c.42.1.2 (A:515-900) Histone deacetylase 7, HDAC7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Arginase/deacetylase
superfamily: Arginase/deacetylase
family: Histone deacetylase, HDAC
domain: Histone deacetylase 7, HDAC7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5e-68  Score=568.37  Aligned_cols=250  Identities=47%  Similarity=0.845  Sum_probs=234.1

Q ss_pred             HHHHHHHHHHHcCCCcceeEeeCCCCCCCCCCCCCCccccchHHHHHHHHHHhcCCCeeEEeeeccccCccchhccccCC
Q psy8282         363 VAWNKVVDSVLNGESAHGVAIIRPPGHHAEQDEPCGFCIFNNVSVAAKYALDNHGLSRVLILDWDVHHGNGTQAMFYNDP  442 (632)
Q Consensus       363 ~s~~~av~~v~~g~~~~afalvRPpGHHA~~~~a~GFC~fNnvAIAa~~~~~~~g~~RVlIiD~DvHHGnGTq~iF~~dp  442 (632)
                      ++.++|++.|++|+.+++||++|||||||.+++++|||+|||+||||++++++++++||+|||||||||||||+||++||
T Consensus       129 G~~~~a~~~v~~~~~~~afa~~rppGHHA~~~~~~GFC~fNdvAiaa~~l~~~~~~~rV~iiD~DvHhGnGTq~if~~~~  208 (386)
T d3c10a1         129 GSVTDLAFKVASRELKNGFAVVRPPGHHADHSTAMGFCFFNSVAIACRQLQQQSKASKILIVDWDVHHGNGTQQTFYQDP  208 (386)
T ss_dssp             HHHHHHHHHHHTTSSSEEEECCSSCCTTCBTTBCBTTBSSCHHHHHHHHHHHHSTTCCEEEEECSSSCCHHHHHHHTTCT
T ss_pred             hHHHHHHhhhhcCcccccccccccccccccccccCCcccccHHHHHHHHHHhhcccCCceEEecccCCCCceeeEeeccc
Confidence            33489999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEeeccCCCCCCCCCCCCCCCCCcCCCCCCccEEEecCCC---CCCChHHHHHHHHHHHHHHHHHcCCCEEEEEcCC
Q psy8282         443 RVLYISVHRYDHGSFFPHSKDAGPHNVGEGKGEGFNVNVAWNK---KGMSDPEYIAAFQQVILPIAYQFNPELVLVSAGY  519 (632)
Q Consensus       443 ~Vl~iSiH~~~~g~~yPgt~~g~~~~~G~g~g~g~~vNvPl~~---~g~~D~~Yl~~~~~vl~p~l~~f~PdlIvvsAGf  519 (632)
                      +|+|+|||+++.+.|||+|  |..+|+|.+.|+|+|+|+|||.   ++++|++|+.+|+++|.|++++|+||+|||||||
T Consensus       209 ~V~~~SiH~~~~~~~~p~t--G~~~e~G~g~g~g~~~n~pl~~~l~~~~~d~~yl~~~~~~l~~~~~~f~PdlIvvsaG~  286 (386)
T d3c10a1         209 SVLYISLHRHDDGNFFPGS--GAVDEVGAGSGEGFNVNVAWAGGLDPPMGDPEYLAAFRIVVMPIAREFSPDLVLVSAGF  286 (386)
T ss_dssp             TEEEEEEEECTTTTSTTCC--CCTTCCCCGGGTTCEEEEEECSCSSSCCBHHHHHHHHHHTHHHHHHHHCCSEEEEEECC
T ss_pred             cccccccccccccccCCCC--CCHHhcCCCCCcccccccccccccCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence            9999999999988899998  6788999999999999999862   4689999999999999999999999999999999


Q ss_pred             CCCCCC--CCCCcCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCcchHHHHHHHHHHHHcCCCCCCCCc---cccCChhH
Q psy8282         520 DACVND--PLGGCKVSPEAYAHFTHWLKALAQGRIILALEGGYNISSISYAMTLCTKALLGDPLPLLES---DLDINSSA  594 (632)
Q Consensus       520 Da~~~D--plg~~~lt~~~y~~~~~~l~~~a~grvv~vLEGGY~~~~la~~~~~~~~~Llg~~~~~~~~---~~~~~~~~  594 (632)
                      |+|++|  |||+|+||+++|.+++++|++++++|++++||||||+.+++++|.+++++|+|.+.++...   ...++.+.
T Consensus       287 D~~~~D~~pLg~l~lt~~~~~~~~~~l~~~~~~~vv~vleGGY~~~~l~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~  366 (386)
T d3c10a1         287 DAAEGHPAPLGGYHVSAKCFGYMTQQLMNLAGGAVVLALEGGHDLTAICDASEACVAALLGNRVDPLSEEGWKQKPNLNA  366 (386)
T ss_dssp             TTBTTCCGGGCCCBBCHHHHHHHHHHHTTSGGGCEEEEECSCCCHHHHHHHHHHHHHHHHTCCCCGGGCSGGGSCCCHHH
T ss_pred             cccccCcchhhcCccCHHHHHHHHHHHHHHcCCCEEEEeCCCCChhHHHHHHHHHHHHHhCCCCCCCCccccccCCCHHH
Confidence            999999  8999999999999999999999989999999999999999999999999999987664432   23567788


Q ss_pred             HHHHHHHHHHHhhccccccc
Q psy8282         595 VTSIKETISSHKAYWSSLKF  614 (632)
Q Consensus       595 ~~~i~~vi~~~~~~W~~~~~  614 (632)
                      .+.++++++.|++||++++.
T Consensus       367 ~~~l~~~~~~~~~~w~~~~~  386 (386)
T d3c10a1         367 IRSLEAVIRVHSKYWGCMQR  386 (386)
T ss_dssp             HHHHHHHHHHHTTTCGGGCC
T ss_pred             HHHHHHHHHHHHHhhHhhcC
Confidence            99999999999999999873
>d1t64a_ c.42.1.2 (A:) Histone deacetylase 8, HDAC8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1c3pa_ c.42.1.2 (A:) HDAC homologue {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d3c10a1 c.42.1.2 (A:515-900) Histone deacetylase 7, HDAC7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t64a_ c.42.1.2 (A:) Histone deacetylase 8, HDAC8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1c3pa_ c.42.1.2 (A:) HDAC homologue {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d2uzga1 g.44.1.5 (A:36-130) Ubiquitin carboxyl-terminal hydrolase 33, UBP33 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2g45a1 g.44.1.5 (A:173-285) Ubiquitin carboxyl-terminal hydrolase 5, UBP5 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2idaa1 g.44.1.5 (A:1-102) Hypothetical protein RPA1320 {Rhodopseudomonas palustris [TaxId: 1076]} Back     information, alignment and structure