Psyllid ID: psy8283

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-----
Protein Sequence
MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKVKMALRTSGHLLLGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPEDNREAAVNAITLPEVFHDFETTMPEINSVQFEPVKSLAPPTKRLMHWKESGGVEKLFALPGRPIPARALFKDANLLFEDGPLGRVCDPPQFMSSSTSMMNQMEIDGDAFSGNLNADAPHMFGLKLFDDTPIGGVDMNEPPAPPSVPPPAPESDDDDHFGGPASPMGHPRSRTIHSIVYSVKTLVPQR
Secondary Structure (PSIPRED)
ccccHHHHHcccccHHHHHHHcccccccHHHHHcccHHHHHHHHcccccccEEEEHHcccccEEEEEHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHccccHHHHHHHHHHHHHccccHHHcccHHHHHHHHHcccccEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccEEccccccccccccccccHHcHHHHcccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccEcccc
Coil and Loop (DISEMBL)
MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIeksvdgilqPKVKMALRTSGHLLLGVVRIYSRKAKYLLADCNEAFVKIKMafrpgmvdlpednREAAVNAitlpevfhdfettmpeinsvqfepvkslapptkrlmhwkesggveklfalpgrpiparalfkdanllfedgplgrvcdppqfmsssTSMMNQMeidgdafsgnlnadaphmfglklfddtpiggvdmneppappsvpppapesddddhfggpaspmghprsrtIHSIVYSVKTLVPQR
Flexible Loop (DISEMBL)
MFYAQFVlakkgplaRIWLAAHWDKKLTKAHVFETnieksvdgilQPKVKMALRTSGHLLLGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPEDNREAAVNAITLPEVFHDFETTMPeinsvqfepvkSLAPPTKRLMHWKESGGVEKLFALPGRPIPARALFKDANLLFEDGPLGRVCDPPQFMSSSTSMMNQMEIDGDAFSGNLNADAPHMFGLKLFDDTPIGGVDMNEPPAPPSVPPPAPESDDDDHFGGPASpmghprsrtihSIVYSvktlvpqr
Low Complexity Region (SEG)
MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKVKMALRTSGHLLLGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPEDNREAAVNAITLPEVFHDFETTMPEINSVQFEPVKSLAPPTKRLMHWKESGGVEKLFALPGRPIPARALFKDANLLFEDGPLGRVCDPPQFMSSSTSMMNQMEIDGDAFSGNLNADAPHMFGLKLFDDTPIGGVDMNeppappsvpppapesddddHFGGPASPMGHPRSRTIHSIVYSVKTLVPQR
Disordered region (IsUnstruct)
*FYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKVKMALRTSGHLLLGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPEDNREAAVNAITLPEVFHDFETTMPEINSVQFEPVK*L***TKRLMHWKESGGVEKLFALPGRPIPARALFKDANLLFEDGPLGRVC*******************************PHMFGLKLFDD**********************************************SIVYSV*******
Disordered Region (DISOPRED)
MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKVKMALRTSGHLLLGVVRIYSRKAKYLLADCNEAFVKIKMAFRP*********REAAVNAITLPEVFHDFETTMPEINSVQFEP*****************************************************************************************LKLF********************************************************L****
Disordered Region (DISEMBL)
MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKVKMALRTSGHLLLGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPEDNREAAVNAITLPEVFHDFETTMPEINSVQFEPVKSLAPPTKRLMHWKESGGVEKLFALPGRPIPARALFKDANLLFEDGPLGRVCDPPQFMSSSTSMMNQMEIDGDAFSGNLNADAPHMFGLKLFDDTPIGGVDMNEPP***************DHFGGPASPMGHPRSRTIHSIVYSVKTLVPQR
Disordered Region (DISPRO)
MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKVKMALRTSGHLLLGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPEDNREAAVNAITLPEVFHDFETTMPEINSVQFEPVKSLAPPTKRLMHWKESGGVEKLFALPGRPIPARALFKDANLLFED****************************************************************************************************V*******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKVKMALRTSGHLLLGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPEDNREAAVNAITLPEVFHDFETTMPEINSVQFEPVKSLAPPTKRLMHWKESGGVEKLFALPGRPIPARALFKDANLLFEDGPLGRVCDPPQFMSSSTSMMNQMEIDGDAFSGNLNADAPHMFGLKLFDDTPIGGVDMNEPPAPPSVPPPAPESDDDDHFGGPASPMGHPRSRTIHSIVYSVKTLVPQR
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	285	2.2.26 [Sep-21-2011]
Q61550	635	Double-strand-break repai	yes	N/A	0.912	0.409	0.482	1e-61
Q3SWX9	630	Double-strand-break repai	yes	N/A	0.912	0.412	0.485	2e-61
O60216	631	Double-strand-break repai	yes	N/A	0.912	0.412	0.478	4e-60
O93310	629	Double-strand-break repai	N/A	N/A	0.445	0.201	0.795	2e-57
D2HSB3	554	Double-strand-break repai	no	N/A	0.417	0.214	0.739	3e-50
Q9H4I0	556	Double-strand-break repai	no	N/A	0.810	0.415	0.467	5e-50
A2AU37	552	Double-strand-break repai	no	N/A	0.414	0.213	0.737	8e-50
P30776	628	Cohesin subunit rad21 OS=	yes	N/A	0.431	0.195	0.492	4e-33
Q9FQ19	693	Sister chromatid cohesion	no	N/A	0.403	0.165	0.469	2e-24
Q9FQ20	810	Sister chromatid cohesion	no	N/A	0.403	0.141	0.411	2e-18

>sp|Q61550|RAD21_MOUSE Double-strand-break repair protein rad21 homolog OS=Mus musculus GN=Rad21 PE=1 SV=3

 Score =  236 bits (603), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 135/280 (48%), Positives = 171/280 (61%), Gaps = 20/280 (7%)

Query: 1   MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKVKMALRTSGHLL 60
           MFYA FVL+K+GPLA+IWLAAHWDKKLTKAHVFE N+E SV+ I+ PKVKMALRTSGHLL
Sbjct: 1   MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPKVKMALRTSGHLL 60

Query: 61  LGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPEDNREAAVNAITLPEVFHDFETT 120
           LGVVRIY RKAKYLLADCNEAF+KIKMAFRPG+VDLPE+NREAA NAITLPE FHDF+  
Sbjct: 61  LGVVRIYHRKAKYLLADCNEAFIKIKMAFRPGVVDLPEENREAAYNAITLPEEFHDFDQP 120

Query: 121 MPEINSVQFEPVKSLAPP-TKRLMHWKESGGVEKL-------FALPGRPIPAR-ALFKDA 171
           +P+++ +      SL     + +   +E G +  L       F +  R I    + F+D 
Sbjct: 121 LPDLDDIDVAQQFSLNQSRVEEITMREEVGNISILQENDFGDFGMDDREIMREGSAFEDD 180

Query: 172 NLLFEDGPLGRVCDPPQFMSSSTSMMNQMEIDGDAFSGNL-NADAPHMFGLKLFDDTPIG 230
           ++L        + +P Q  S+    MN +E +      N    +   +   KL  +   G
Sbjct: 181 DMLVSTSASNLLLEPEQSTSNLNEKMNHLEYEDQYKDDNFGEGNDGGILDDKLISNND-G 239

Query: 231 GVDMNEPPAPPSVPPPAPES--------DDDDHFGGPASP 262
           G+  ++PPA        PE         DD+   GGP SP
Sbjct: 240 GI-FDDPPALSEAGVMLPEQPAHDDMDEDDNGSLGGPDSP 278

Cleavable component of the cohesin complex, involved in chromosome cohesion during cell cycle, in DNA repair, and in apoptosis. Plays a role in apoptosis, via its cleavage by caspase-3/CASP3 or caspase-7/CASP7 during early steps of apoptosis: the C-terminal 64 kDa cleavage product may act as a nuclear signal to initiate cytoplasmic events involved in the apoptotic pathway (By similarity). The cohesin complex is required for the cohesion of sister chromatids after DNA replication. The cohesin complex apparently forms a large proteinaceous ring within which sister chromatids can be trapped. At metaphase-anaphase transition, this protein is cleaved by separase/ESPL1 and dissociates from chromatin, allowing sister chromatids to segregate. The cohesin complex may also play a role in spindle pole assembly during mitosis.
Mus musculus (taxid: 10090)

>sp|Q3SWX9|RAD21_BOVIN Double-strand-break repair protein rad21 homolog OS=Bos taurus GN=RAD21 PE=2 SV=1

 Score =  236 bits (602), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 136/280 (48%), Positives = 174/280 (62%), Gaps = 20/280 (7%)

Query: 1   MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKVKMALRTSGHLL 60
           MFYA FVL+K+GPLA+IWLAAHWDKKLTKAHVFE N+E SV+ I+ PKVKMALRTSGHLL
Sbjct: 1   MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPKVKMALRTSGHLL 60

Query: 61  LGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPEDNREAAVNAITLPEVFHDFETT 120
           LGVVRIY RKAKYLLADCNEAF+KIKMAFRPG+VDLPE+NREAA NAITLPE FHDF+  
Sbjct: 61  LGVVRIYHRKAKYLLADCNEAFIKIKMAFRPGVVDLPEENREAAYNAITLPEEFHDFDQP 120

Query: 121 MPEINSVQFEPVKSLAPP-TKRLMHWKESGGVEKL-------FALPGRPIPAR-ALFKDA 171
           +P+++ +      SL     + +   +E G +  L       F +  R I    + F+D 
Sbjct: 121 LPDLDDIDVAQQFSLNQSRVEEITMREEVGNISILQENDFGDFGMDDREIMREGSAFEDD 180

Query: 172 NLLFEDGPLGRVCDPPQFMSSSTSMMNQMEIDGDAFSGNL-NADAPHMFGLKLFDDTPIG 230
           ++L   G    + +P Q  S+    +N +E +      N    +   +   KL  +   G
Sbjct: 181 DMLASTGASNLLLEPEQSTSNLNEKINHLEYEDQYKDDNFGEGNDGGILDDKLISNND-G 239

Query: 231 GVDMNEPPAPPSVPPPAPES------DDDDH--FGGPASP 262
           G+  ++PPA        PE       D+DD+   GGP SP
Sbjct: 240 GI-FDDPPALSEAGVMLPEQPAHDDMDEDDNVSMGGPDSP 278

Cleavable component of the cohesin complex, involved in chromosome cohesion during cell cycle, in DNA repair, and in apoptosis. Plays a role in apoptosis, via its cleavage by caspase-3/CASP3 or caspase-7/CASP7 during early steps of apoptosis: the C-terminal 64 kDa cleavage product may act as a nuclear signal to initiate cytoplasmic events involved in the apoptotic pathway. The cohesin complex is required for the cohesion of sister chromatids after DNA replication. The cohesin complex apparently forms a large proteinaceous ring within which sister chromatids can be trapped. At metaphase-anaphase transition, this protein is cleaved by separase/ESPL1 and dissociates from chromatin, allowing sister chromatids to segregate. The cohesin complex may also play a role in spindle pole assembly during mitosis.

Bos taurus (taxid: 9913)

>sp|O60216|RAD21_HUMAN Double-strand-break repair protein rad21 homolog OS=Homo sapiens GN=RAD21 PE=1 SV=2

 Score =  231 bits (589), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 134/280 (47%), Positives = 172/280 (61%), Gaps = 20/280 (7%)

Query: 1   MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKVKMALRTSGHLL 60
           MFYA FVL+K+GPLA+IWLAAHWDKKLTKAHVFE N+E SV+ I+ PKVKMALRTSGHLL
Sbjct: 1   MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPKVKMALRTSGHLL 60

Query: 61  LGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPEDNREAAVNAITLPEVFHDFETT 120
           LGVVRIY RKAKYLLADCNEAF+KIKMAFRPG+VDLPE+NREAA NAITLPE FHDF+  
Sbjct: 61  LGVVRIYHRKAKYLLADCNEAFIKIKMAFRPGVVDLPEENREAAYNAITLPEEFHDFDQP 120

Query: 121 MPEINSVQFEPVKSLAPP-TKRLMHWKESGGVEKL-------FALPGRPIPAR-ALFKDA 171
           +P+++ +      SL     + +   +E G +  L       F +  R I    + F+D 
Sbjct: 121 LPDLDDIDVAQQFSLNQSRVEEITMREEVGNISILQENDFGDFGMDDREIMREGSAFEDD 180

Query: 172 NLLFEDGPLGRVCDPPQFMSSSTSMMNQMEIDGDAFSGNL-NADAPHMFGLKLFDDTPIG 230
           ++L        + +  Q  S+    +N +E +      N    +   +   KL  +   G
Sbjct: 181 DMLVSTTTSNLLLESEQSTSNLNEKINHLEYEDQYKDDNFGEGNDGGILDDKLISNND-G 239

Query: 231 GVDMNEPPAPPSVPPPAPES------DDDDH--FGGPASP 262
           G+  ++PPA        PE       D+DD+   GGP SP
Sbjct: 240 GI-FDDPPALSEAGVMLPEQPAHDDMDEDDNVSMGGPDSP 278

Cleavable component of the cohesin complex, involved in chromosome cohesion during cell cycle, in DNA repair, and in apoptosis. The cohesin complex is required for the cohesion of sister chromatids after DNA replication. The cohesin complex apparently forms a large proteinaceous ring within which sister chromatids can be trapped. At metaphase-anaphase transition, this protein is cleaved by separase/ESPL1 and dissociates from chromatin, allowing sister chromatids to segregate. The cohesin complex may also play a role in spindle pole assembly during mitosis. Also plays a role in apoptosis, via its cleavage by caspase-3/CASP3 or caspase-7/CASP7 during early steps of apoptosis: the C-terminal 64 kDa cleavage product may act as a nuclear signal to initiate cytoplasmic events involved in the apoptotic pathway.

Homo sapiens (taxid: 9606)

>sp|O93310|RAD21_XENLA Double-strand-break repair protein rad21 homolog OS=Xenopus laevis GN=rad21 PE=1 SV=1

 Score =  223 bits (567), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 101/127 (79%), Positives = 116/127 (91%)

Query: 1   MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKVKMALRTSGHLL 60
           MFYA FVL+K+GPLA+IWLAAHWDKKLTKAHVFE N+E SV+ I+ PKVKMALRTSGHLL
Sbjct: 1   MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIICPKVKMALRTSGHLL 60

Query: 61  LGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPEDNREAAVNAITLPEVFHDFETT 120
           LGVVRIY RKAKYLLADCNEAF+KIKMAFRPG+VDLPE+NREAA NAITLPE FHDF+  
Sbjct: 61  LGVVRIYHRKAKYLLADCNEAFIKIKMAFRPGVVDLPEENREAAYNAITLPEEFHDFDQP 120

Query: 121 MPEINSV 127
           +P+++ +
Sbjct: 121 LPDLDDI 127

Cleavable component of the cohesin complex, involved in chromosome cohesion during cell cycle, in DNA repair, and in apoptosis. The cohesin complex is required for the cohesion of sister chromatids after DNA replication. The cohesin complex apparently forms a large proteinaceous ring within which sister chromatids can be trapped. At metaphase-anaphase transition, this protein is cleaved by separase/espl1 and dissociates from chromatin, allowing sister chromatids to segregate.

Xenopus laevis (taxid: 8355)

>sp|D2HSB3|RD21L_AILME Double-strand-break repair protein rad21-like protein 1 OS=Ailuropoda melanoleuca GN=RAD21L1 PE=3 SV=1

 Score =  199 bits (505), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 88/119 (73%), Positives = 106/119 (89%)

Query: 1   MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKVKMALRTSGHLL 60
           MFY   +++K+GPLA+IWLAAHW+KKLTKAHVFE N+E +++ IL  KVK+ALRTSGHLL
Sbjct: 1   MFYTHVLMSKRGPLAKIWLAAHWEKKLTKAHVFECNLEITIEKILSSKVKIALRTSGHLL 60

Query: 61  LGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPEDNREAAVNAITLPEVFHDFET 119
           LGVVRIY+RKAKYLLADCNEA +K+KM FRPG+VDLP++N EAA NAITLPE FHDF+T
Sbjct: 61  LGVVRIYNRKAKYLLADCNEALLKMKMTFRPGLVDLPKENFEAAYNAITLPEEFHDFDT 119

Meiosis-specific component of some cohesin complex. Probably required during early meiosis for separation of sister chromatids and homologous chromosomes. Replaces RAD21 in premeiotic S phase (during early stages of prophase I), while RAD21 reappears in later stages of prophase I. May be involved in synapsis initiation and crossover recombination between homologous chromosomes.

Ailuropoda melanoleuca (taxid: 9646)

>sp|Q9H4I0|RD21L_HUMAN Double-strand-break repair protein rad21-like protein 1 OS=Homo sapiens GN=RAD21L1 PE=2 SV=3

 Score =  198 bits (503), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 122/261 (46%), Positives = 155/261 (59%), Gaps = 30/261 (11%)

Query: 1   MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKVKMALRTSGHLL 60
           MFY   +++K+GPLA+IWLAAHW+KKLTKAHVFE N+E +++ IL PKVK+ALRTSGHLL
Sbjct: 1   MFYTHVLMSKRGPLAKIWLAAHWEKKLTKAHVFECNLEITIEKILSPKVKIALRTSGHLL 60

Query: 61  LGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPEDNREAAVNAITLPEVFHDFETT 120
           LGVVRIY+RKAKYLLADC+EAF+K+KM F PG+VDLP++N EA+ NAITLPE FHDF+T 
Sbjct: 61  LGVVRIYNRKAKYLLADCSEAFLKMKMTFCPGLVDLPKENFEASYNAITLPEEFHDFDTQ 120

Query: 121 MPEINSVQFEPVKSLAPPTK---------RLMHWKESGGVEKLFALPGRPIPARALFKDA 171
                 V     ++ + P +          L+   ES G E         +   + F D 
Sbjct: 121 NMNAIDVSEHFTQNQSRPEEITLRENFDNDLIFQAESFGEE------SEILRRHSFFDDN 174

Query: 172 NLLFEDGPLGRVCDPPQFMSSSTSMMNQMEI---DGDAFSGNLNADAPHMFGLKLFDDTP 228
            LL   GPL           SS S+  +  +    GD F G+  A A  M    L DD  
Sbjct: 175 ILLNSSGPL--------IEHSSGSLTGERSLFYDSGDGF-GDEGA-AGEMIDNLLQDDQN 224

Query: 229 IGGVDM--NEPPAPPSVPPPA 247
           I   DM  N   + PS PP +
Sbjct: 225 ILLEDMHLNREISLPSEPPNS 245

Meiosis-specific component of some cohesin complex. Probably required during early meiosis for separation of sister chromatids and homologous chromosomes. Replaces RAD21 in premeiotic S phase (during early stages of prophase I), while RAD21 reappears in later stages of prophase I. May be involved in synapsis initiation and crossover recombination between homologous chromosomes.

Homo sapiens (taxid: 9606)

>sp|A2AU37|RD21L_MOUSE Double-strand-break repair protein rad21-like protein 1 OS=Mus musculus GN=Rad21l1 PE=1 SV=2

 Score =  197 bits (500), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 87/118 (73%), Positives = 105/118 (88%)

Query: 1   MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKVKMALRTSGHLL 60
           MFY   +++K+GPLA+IWLAAHW+KKLTKAHVFE N+E ++  I+ PKVK+ALRTSGHLL
Sbjct: 1   MFYTHVLMSKRGPLAKIWLAAHWEKKLTKAHVFECNLEITIQKIISPKVKIALRTSGHLL 60

Query: 61  LGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPEDNREAAVNAITLPEVFHDFE 118
           LGVVRIY+RKAKYLLADC+EAF+K+KM FRPG+VDLP++N EAA N ITLPE FHDFE
Sbjct: 61  LGVVRIYNRKAKYLLADCSEAFLKMKMTFRPGLVDLPKENFEAAYNTITLPEEFHDFE 118

Meiosis-specific component of some cohesin complex. Probably required during early meiosis for separation of sister chromatids and homologous chromosomes. Replaces RAD21 in premeiotic S phase (during early stages of prophase I), while RAD21 reappears in later stages of prophase I. May be involved in synapsis initiation and crossover recombination between homologous chromosomes.

Mus musculus (taxid: 10090)

>sp|P30776|RAD21_SCHPO Cohesin subunit rad21 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rad21 PE=1 SV=1

 Score =  141 bits (356), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 66/134 (49%), Positives = 94/134 (70%), Gaps = 11/134 (8%)

Query: 1   MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKVK-MALRTSGHL 59
           MFY++ +L+KKGPLA++WLAAHW+KKL+K     T+IE+SV  I+  +   MALR SG L
Sbjct: 1   MFYSEAILSKKGPLAKVWLAAHWEKKLSKVQTLHTSIEQSVHAIVTEETAPMALRLSGQL 60

Query: 60  LLGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPE--------DNREAAVNA--IT 109
           +LGVVRIYSRKA+YLL DC EA +++KM+F+PG VD+ E          ++A   +  +T
Sbjct: 61  MLGVVRIYSRKARYLLEDCTEALMRLKMSFQPGQVDMIEPATALQSLKGKDAVTQSANLT 120

Query: 110 LPEVFHDFETTMPE 123
           LPE   +F+  +P+
Sbjct: 121 LPETITEFDLLVPD 134

Cleavable component of the cohesin complex, involved in chromosome cohesion during cell cycle. The cohesin complex is required for the cohesion of sister chromatids after DNA replication. The cohesin complex apparently forms a large proteinaceous ring within which sister chromatids can be trapped. At metaphase-anaphase transition, this protein is cleaved by cut1 and dissociates from chromatin, allowing sister chromatids to segregate. Also involved in the DNA double-strand-break (DSB) repair system.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q9FQ19|SCC13_ARATH Sister chromatid cohesion 1 protein 3 OS=Arabidopsis thaliana GN=SYN3 PE=2 SV=2

 Score =  112 bits (281), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 54/115 (46%), Positives = 74/115 (64%)

Query: 1   MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKVKMALRTSGHLL 60
           MFY+  +LA+KGPL  +W AAH  ++L K+     NI  +VD I+ P+V +ALRTS HLL
Sbjct: 1   MFYSHTLLARKGPLGTVWCAAHVHQRLKKSQYTSINIPDTVDNIMFPEVPLALRTSSHLL 60

Query: 61  LGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPEDNREAAVNAITLPEVFH 115
           +GVVRIYS+K  YL  D N     +  AF    V+LPED R+A   ++TLP+  +
Sbjct: 61  VGVVRIYSKKVDYLYNDWNLLNTWVAKAFVSTQVNLPEDARQAPPESVTLPQALN 115

May be involved in sister chromatid cohesion during mitosis.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FQ20|SCC12_ARATH Sister chromatid cohesion 1 protein 2 OS=Arabidopsis thaliana GN=SYN2 PE=2 SV=2

 Score = 93.2 bits (230), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 51/124 (41%), Positives = 73/124 (58%), Gaps = 9/124 (7%)

Query: 1   MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKVK-MALRTSGHL 59
           MFY+  ++++KGPL  IW+AA++ KKL K+ V  T+I  SVD ILQ ++  +  R   +L
Sbjct: 1   MFYSHCLVSRKGPLGAIWVAAYFFKKLKKSQVKATHIPSSVDQILQKELDALTYRVLAYL 60

Query: 60  LLGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPEDNREAAVNAITLPEVFHDFET 119
           LLGVVRIYS+K  +L  DCN+A + +K           E NRE     ++LP     F  
Sbjct: 61  LLGVVRIYSKKVDFLFDDCNKALIGVKEFV------AKERNREKT--GVSLPASIECFSI 112

Query: 120 TMPE 123
            +PE
Sbjct: 113 ALPE 116

May be involved in sister chromatid cohesion during mitosis.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	285
332020968	736	Double-strand-break repair protein rad21	0.859	0.332	0.573	2e-72
322795405	778	hypothetical protein SINV_03308 [Solenop	0.919	0.336	0.556	3e-72
307207507	781	Double-strand-break repair protein rad21	0.926	0.338	0.551	5e-72
189234473	798	PREDICTED: similar to Rad21 CG17436-PA [	0.915	0.327	0.578	7e-71
345481278	779	PREDICTED: double-strand-break repair pr	0.926	0.338	0.538	3e-70
328781551	773	PREDICTED: double-strand-break repair pr	0.926	0.341	0.534	4e-70
380011114	772	PREDICTED: double-strand-break repair pr	0.926	0.341	0.534	4e-70
242007052	713	cohesin subunit rad21, putative [Pedicul	0.912	0.364	0.552	1e-69
383861598	773	PREDICTED: double-strand-break repair pr	0.915	0.337	0.539	4e-69
340713323	772	PREDICTED: double-strand-break repair pr	0.919	0.339	0.538	3e-68

>gi|332020968|gb|EGI61361.1| Double-strand-break repair protein rad21-like protein [Acromyrmex echinatior]

 Score =  278 bits (710), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 160/279 (57%), Positives = 183/279 (65%), Gaps = 34/279 (12%)

Query: 1   MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKVKMALRTSGHLL 60
           MFYA FVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKVKMALRTSGHLL
Sbjct: 1   MFYAHFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKVKMALRTSGHLL 60

Query: 61  LGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPEDNREAAVNAITLPEVFHDFETT 120
           LGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPE++REAAV AITLPEVFHDF+T 
Sbjct: 61  LGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPEEHREAAVTAITLPEVFHDFDTA 120

Query: 121 MPEINSVQFEPVKSLAPPTKRLMHWKESGGVEKLFALPGRPIPARALFKDANLLFEDGPL 180
           MPE+  V  E   SL           +S   E         I  R  +   +L+  D   
Sbjct: 121 MPELKDVDIEAQFSL----------NQSRAEE---------ITMREDYGSLSLVTHDQGF 161

Query: 181 GRV---CDPPQFMSSSTSMMNQMEIDGDAFSGNLNADAPHMFGLKLFDDTPIGGV----- 232
           G +    +PP+ +   + M   ++    +F   +N  A  +F   LFD+ P+G V     
Sbjct: 162 GDMSFDAEPPELLRHGSGMEPSLDQIQRSFIIIVNVLAGGLFEGGLFDEAPMGEVPVPEV 221

Query: 233 -DMNEPPAPPSVPPPAP----ESDDD--DHFGGPASPMG 264
             +NE     +V   A     ESD+D  DHFGGPASPMG
Sbjct: 222 SSINEQQETGAVTGTAASVHDESDEDMGDHFGGPASPMG 260

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322795405|gb|EFZ18170.1| hypothetical protein SINV_03308 [Solenopsis invicta]

 Score =  277 bits (709), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 168/302 (55%), Positives = 191/302 (63%), Gaps = 40/302 (13%)

Query: 1   MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKVKMALRTSGHLL 60
           MFYA FVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKVKMALRTSGHLL
Sbjct: 1   MFYAHFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKVKMALRTSGHLL 60

Query: 61  LGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPEDNREAAVNAITLPEVFHDFETT 120
           LGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPE++REAAV AITLPEVFHDF+T 
Sbjct: 61  LGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPEEHREAAVTAITLPEVFHDFDTA 120

Query: 121 MPEINSVQFEPVKSLAPPTKRLMHWKESGGVEKLFA-------LPGRPIPARAL------ 167
           MPE+  V  E   SL       +  +E  G   L         +     P   L      
Sbjct: 121 MPELKDVDIEAQFSLNQSRAEEITMREDYGSLSLVTHDQGFGDMSFDAEPPELLRHGSGM 180

Query: 168 ---FKDANLLFEDGP-----LGRVCDPPQFMSSSTSMMNQMEID----GDAFSGNLNAD- 214
                 +++LF DG      L +    P   +S+T+    M+ID     D F G+L  D 
Sbjct: 181 EPSLDQSHMLFSDGSGIETALEQKEKEPVAGTSATT--QPMDIDTPIRDDGFGGHLGQDI 238

Query: 215 -APHMFGLKLFDDTPIGGV------DMNEPPAPPSVPPPAP----ESDDD-DHFGGPASP 262
            +  +F   LFD+ P+G V       +NE     + P  A     ESD+D DHFGGPASP
Sbjct: 239 ISGGLFEGGLFDEAPMGEVPVPEVSSINEQQEAGTAPGTAASVHDESDEDMDHFGGPASP 298

Query: 263 MG 264
           MG
Sbjct: 299 MG 300

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307207507|gb|EFN85210.1| Double-strand-break repair protein rad21-like protein [Harpegnathos saltator]

 Score =  277 bits (708), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 166/301 (55%), Positives = 189/301 (62%), Gaps = 37/301 (12%)

Query: 1   MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKVKMALRTSGHLL 60
           MFYA FVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKVKMALRTSGHLL
Sbjct: 1   MFYAHFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKVKMALRTSGHLL 60

Query: 61  LGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPEDNREAAVNAITLPEVFHDFETT 120
           LGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPE++REAAV AITLPEVFHDF+T 
Sbjct: 61  LGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPEEHREAAVTAITLPEVFHDFDTA 120

Query: 121 MPEINSVQFEPVKSLAPPTKRLMHWKESGGVEKLFA-------LPGRPIPARAL------ 167
           MPE+  V  E   SL       +  +E  G   L         +     P   L      
Sbjct: 121 MPELKDVDIEAQFSLNQSRAEEITMREDYGSLSLVTHDQGFGDMSFDAEPPELLRHGSTM 180

Query: 168 ---FKDANLLFEDGP------LGRVCDPPQFMSSSTSMMN-QMEIDGDAFSGNLNAD--A 215
                 +++LF DGP        +  +P    SS+T  M+    I  D F G+L  D  +
Sbjct: 181 EPSLDQSHMLFSDGPGIETAIEQKEKEPIAGTSSTTQPMDIDTPIRDDGFGGHLGQDIIS 240

Query: 216 PHMFGLKLFDDTPIGGVDMNE----------PPAPPSVPPPAPESDDD--DHFGGPASPM 263
             +F   LFD+ P+G V + E            AP +      ESD+D  DHFGGPASP+
Sbjct: 241 GGLFEGGLFDEAPMGEVPVPEVSSITEQQETGAAPGTAASVHDESDEDMGDHFGGPASPI 300

Query: 264 G 264
           G
Sbjct: 301 G 301

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189234473|ref|XP_001808764.1| PREDICTED: similar to Rad21 CG17436-PA [Tribolium castaneum] gi|270002814|gb|EEZ99261.1| rad21 [Tribolium castaneum]

 Score =  273 bits (698), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 173/299 (57%), Positives = 192/299 (64%), Gaps = 38/299 (12%)

Query: 1   MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKVKMALRTSGHLL 60
           MFYA FVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKVKMALRTSGHLL
Sbjct: 1   MFYAHFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKVKMALRTSGHLL 60

Query: 61  LGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPEDNREAAVNAITLPEVFHDFETT 120
           LGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPE++REAAVNAITLPEVFHDF+TT
Sbjct: 61  LGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPEEHREAAVNAITLPEVFHDFDTT 120

Query: 121 MPEINSVQFEPVKSLAPPTKRLMHWKESGGVEKL------FALPGRPIPARALFK----- 169
           MPE+N V  E   SL       +  +E  G   L      F   G    A  L +     
Sbjct: 121 MPELNDVDIEAQFSLNQSRAEEITMREDYGNISLVTNDDGFGDMGFDTDAPDLMRHTAGL 180

Query: 170 -----DANLLFEDGPL--GRVCD---PPQFMSSSTSMMNQMEIDG----DAFSGNLNAD- 214
                 +NLLF DG +  G   D    P   +S T     ME+D     D F  NL+ + 
Sbjct: 181 EPSMEQSNLLFSDGAVLDGVGLDKDREPVPSTSGTQHHAPMEMDSAVRDDGFGSNLDQNI 240

Query: 215 -APHMFGLKLFDDTPIGGVDMNEPPA------PPSVP-PPAPESDDDDHFGGPASPMGH 265
            +  +F   LFDD P+G V    PP       P ++P  P  + DD DHFGGP S  GH
Sbjct: 241 ISGGLFEGGLFDDAPMGDV----PPVDHTIQDPQNLPQAPDSDDDDMDHFGGPPSVGGH 295

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345481278|ref|XP_001602260.2| PREDICTED: double-strand-break repair protein rad21 homolog [Nasonia vitripennis]

 Score =  271 bits (692), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 162/301 (53%), Positives = 187/301 (62%), Gaps = 37/301 (12%)

Query: 1   MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKVKMALRTSGHLL 60
           MFYA FVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKVKMALRTSGHLL
Sbjct: 1   MFYAHFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKVKMALRTSGHLL 60

Query: 61  LGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPEDNREAAVNAITLPEVFHDFETT 120
           LGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPE++REA VNAITLPEVFHDF++ 
Sbjct: 61  LGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPEEHREAEVNAITLPEVFHDFDSA 120

Query: 121 MPEINSVQFEPVKSLAPPTKRLMHWKESGGVEKL------FALPGRPIPARALFKDA--- 171
           MPE+  V  E   SL       +  +E  G   L      F      +    L + A   
Sbjct: 121 MPELKDVDIEAQFSLNQSRAEEITMREDYGSLSLVTHDQGFGDMSFDVEPPELLRHASNI 180

Query: 172 -------NLLFEDGPLGRVC----DPPQFMSSSTSMMNQMEID----GDAFSGNLNAD-- 214
                  ++LF D   G          + ++ ++S    M+ID     D F G+L  D  
Sbjct: 181 DAPLDQRHMLFTDDGAGIEAALEQQEKEAVAGTSSAAQPMDIDTPIRDDGFGGHLGQDMI 240

Query: 215 APHMFGLKLFDDTPIGGV---------DMNEPPAPPSVPPPAPESDDD--DHFGGPASPM 263
           +  +F   LFD+ P+G V         +  EP A         +SD+D  DHFGGP SPM
Sbjct: 241 SGGLFEGGLFDEAPMGDVPVPDVSSIGEQQEPNAAAVAASVHDDSDEDMGDHFGGPPSPM 300

Query: 264 G 264
           G
Sbjct: 301 G 301

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328781551|ref|XP_003249994.1| PREDICTED: double-strand-break repair protein rad21 homolog [Apis mellifera]

 Score =  270 bits (691), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 161/301 (53%), Positives = 183/301 (60%), Gaps = 37/301 (12%)

Query: 1   MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKVKMALRTSGHLL 60
           MFYA FVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKVKMALRTSGHLL
Sbjct: 1   MFYAHFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKVKMALRTSGHLL 60

Query: 61  LGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPEDNREAAVNAITLPEVFHDFETT 120
           LGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPE++REAAV AITLPEVFHDF+T 
Sbjct: 61  LGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPEEHREAAVTAITLPEVFHDFDTA 120

Query: 121 MPEINSVQFEPVKSLAPPTKRLMHWKESGGVEKLFA----------------LPGRPIPA 164
           MPE+  V  E   SL       +  +E  G   L                  L       
Sbjct: 121 MPELKDVDIEAQFSLNQSRAEEITMREDYGSLALVTHDQGFGDMSFDAEPPELLRHAGAV 180

Query: 165 RALFKDANLLFEDGP------LGRVCDP-PQFMSSSTSMMNQMEIDGDAFSGNLNAD--A 215
                  ++LF DGP        +  +P P    ++ +M   M I  D F G+L  D  +
Sbjct: 181 EPSLDQTHMLFTDGPGIEATLEQKEKEPVPGPSVTAQAMDIDMPIRDDGFGGHLGQDIIS 240

Query: 216 PHMFGLKLFDDTPIGGV---------DMNEPPAPPSVPPPAPESDDD---DHFGGPASPM 263
             +F   LFD+ P+G V         +  EP   P  PP   +  ++   D FGGP SPM
Sbjct: 241 GGLFEGGLFDEAPMGEVPVPEVSTVTETQEPSVVPGGPPSVHDESEEEMGDRFGGPPSPM 300

Query: 264 G 264
           G
Sbjct: 301 G 301

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380011114|ref|XP_003689657.1| PREDICTED: double-strand-break repair protein rad21 homolog [Apis florea]

 Score =  270 bits (691), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 161/301 (53%), Positives = 183/301 (60%), Gaps = 37/301 (12%)

Query: 1   MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKVKMALRTSGHLL 60
           MFYA FVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKVKMALRTSGHLL
Sbjct: 1   MFYAHFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKVKMALRTSGHLL 60

Query: 61  LGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPEDNREAAVNAITLPEVFHDFETT 120
           LGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPE++REAAV AITLPEVFHDF+T 
Sbjct: 61  LGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPEEHREAAVTAITLPEVFHDFDTA 120

Query: 121 MPEINSVQFEPVKSLAPPTKRLMHWKESGGVEKLFA----------------LPGRPIPA 164
           MPE+  V  E   SL       +  +E  G   L                  L       
Sbjct: 121 MPELKDVDIEAQFSLNQSRAEEITMREDYGSLALVTHDQGFGDMSFDAEPPELLRHASAV 180

Query: 165 RALFKDANLLFEDGP------LGRVCDP-PQFMSSSTSMMNQMEIDGDAFSGNLNAD--A 215
                  ++LF DGP        +  +P P    ++ +M   M I  D F G+L  D  +
Sbjct: 181 EPSLDQTHMLFTDGPGIEATLEQKEKEPVPGPSVTAQAMDIDMPIRDDGFGGHLGQDIIS 240

Query: 216 PHMFGLKLFDDTPIGGV---------DMNEPPAPPSVPPPAPESDDD---DHFGGPASPM 263
             +F   LFD+ P+G V         +  EP   P  PP   +  ++   D FGGP SPM
Sbjct: 241 GGLFEGGLFDEAPMGEVPVPEVSTVTEAQEPSVVPGGPPSVHDESEEEMGDRFGGPPSPM 300

Query: 264 G 264
           G
Sbjct: 301 G 301

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242007052|ref|XP_002424356.1| cohesin subunit rad21, putative [Pediculus humanus corporis] gi|212507756|gb|EEB11618.1| cohesin subunit rad21, putative [Pediculus humanus corporis]

 Score =  269 bits (687), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 158/286 (55%), Positives = 182/286 (63%), Gaps = 26/286 (9%)

Query: 1   MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKVKMALRTSGHLL 60
           MFYA FVL KKGPLARIWLAAHWDKKLTKA VFETNIE SVDGILQPKVK+ALRTSGHLL
Sbjct: 1   MFYAHFVLQKKGPLARIWLAAHWDKKLTKAQVFETNIETSVDGILQPKVKIALRTSGHLL 60

Query: 61  LGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPEDNREAAVNAITLPEVFHDFETT 120
           LGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPE++REAAVN ITLPEVFHDF+ T
Sbjct: 61  LGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPEEHREAAVNTITLPEVFHDFDAT 120

Query: 121 MPEINSVQFEPVKSLAPPTKRLMHWKESGGVEKLFALPGRPIPARALFKDA--NLLFEDG 178
           +P++N V  E   SL       +  +E  G   L  +          F +   ++L    
Sbjct: 121 IPDLNDVDIEAQFSLNQSRAEEITMREDYG--NLCLVTNDEGFGDMGFDNEPPDILRTAA 178

Query: 179 PLGRVCDPPQFMSSSTSMMNQMEID-----GDAFSGNLNAD--APHMF--GLKLFDDTPI 229
            L R  D    + S    +  ++ +     GD F GNL  D     +F  GL LFDDTPI
Sbjct: 179 SLDRSFDQSHLLFSEPDHITHLDREKEPQPGDGFGGNLGPDIMGGGLFEGGLSLFDDTPI 238

Query: 230 GG--------VDMNEPPAPPSVPPPAPESDD--DDHFGGPASPMGH 265
            G        +D  +   P +     P+SDD  D+HFGGP S  GH
Sbjct: 239 VGDIPVPESNIDHQQEKVPSAS---VPDSDDEADNHFGGPPSVGGH 281

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383861598|ref|XP_003706272.1| PREDICTED: double-strand-break repair protein rad21 homolog [Megachile rotundata]

 Score =  267 bits (682), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 164/304 (53%), Positives = 187/304 (61%), Gaps = 43/304 (14%)

Query: 1   MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKVKMALRTSGHLL 60
           MFYA FVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKVKMALRTSGHLL
Sbjct: 1   MFYAHFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKVKMALRTSGHLL 60

Query: 61  LGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPEDNREAAVNAITLPEVFHDFETT 120
           LGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPE++REAAV AITLPEVFHDF+T 
Sbjct: 61  LGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPEEHREAAVTAITLPEVFHDFDTA 120

Query: 121 MPEINSVQFEPVKSLAPPTKRLMHWKESGGV-------------------EKLFALPGRP 161
           MPE+  V  E   SL       +  +E  G                     +L    G  
Sbjct: 121 MPELKDVDIEAQFSLNQSRAEEITMREDYGSLALVTHDQGFGDMSFDAEPPELLRHAGAV 180

Query: 162 IPARALFKDANLLFEDGP------LGRVCDP-PQFMSSSTSMMNQMEIDGDAFSGNLNAD 214
            P+       ++LF DGP        +  +P P    ++ +M   M I  D F G+L  D
Sbjct: 181 EPS---LDQTHMLFTDGPGIEAALEQKEKEPVPGPSVTAQAMDIDMPIRDDGFGGHLGQD 237

Query: 215 --APHMFGLKLFDDTPIGGVDMNEPPA------PPSVPPPAPESDDD------DHFGGPA 260
             +  +F   LFD+ P+G V + E  A      P  V   AP   D+      D FGGP+
Sbjct: 238 IISGGLFEGGLFDEAPMGEVPVPEVSAVTETQEPGVVAGAAPSVHDESEEEMGDRFGGPS 297

Query: 261 SPMG 264
           SPMG
Sbjct: 298 SPMG 301

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340713323|ref|XP_003395194.1| PREDICTED: double-strand-break repair protein rad21 homolog [Bombus terrestris]

 Score =  264 bits (675), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 162/301 (53%), Positives = 183/301 (60%), Gaps = 39/301 (12%)

Query: 1   MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKVKMALRTSGHLL 60
           MFYA FVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKVKMALRTSGHLL
Sbjct: 1   MFYAHFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKVKMALRTSGHLL 60

Query: 61  LGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPEDNREAAVNAITLPEVFHDFETT 120
           LGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPE++REAAV AITLPEVFHDF+T 
Sbjct: 61  LGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPEEHREAAVTAITLPEVFHDFDTA 120

Query: 121 MPEINSVQFEPVKSLAPPTKRLMHWKESGGVEKLFA----------------LPGRPIPA 164
           MPE+  V  E   SL       +  +E  G   L                  L       
Sbjct: 121 MPELKDVDIEAQFSLNQSRAEEITMREDYGSLALVTHDQGFGDMSFDAEPPELLRHAGAV 180

Query: 165 RALFKDANLLFEDGP------LGRVCDP-PQFMSSSTSMMNQMEIDGDAFSGNLNAD--A 215
                  ++LF DGP        +  +P P    ++ +M   M I  D F G+L  D  +
Sbjct: 181 EPSLDQTHMLFTDGPGIEATLEQKEKEPVPGPSVTAQAMDIDMPIRDDGFGGHLGQDIIS 240

Query: 216 PHMFGLKLFDDTPIGGVDMNEPPA-------------PPSVPPPAPESDDDDHFGGPASP 262
             +F   LFD+ P+G V + E  A             PPSV   + E +  D FGGP SP
Sbjct: 241 GGLFEGGLFDEAPMGEVPVPEVSAVAETQEPGVVSGGPPSVHDES-EEEMGDRFGGPPSP 299

Query: 263 M 263
           M
Sbjct: 300 M 300

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	285
FB|FBgn0260987	715	vtd "verthandi" [Drosophila me	0.456	0.181	0.861	4.1e-73
ZFIN|ZDB-GENE-030131-994	643	rad21a "RAD21 homolog (S. pomb	0.445	0.197	0.803	8.7e-65
ZFIN|ZDB-GENE-060503-223	637	rad21b "RAD21 homolog (S. pomb	0.445	0.199	0.795	1.8e-64
UNIPROTKB|O93310	629	rad21 "Double-strand-break rep	0.445	0.201	0.795	3.7e-64
UNIPROTKB|Q3SWX9	630	RAD21 "Double-strand-break rep	0.712	0.322	0.556	8.6e-56
MGI|MGI:108016	635	Rad21 "RAD21 homolog (S. pombe	0.712	0.319	0.556	1.1e-55
UNIPROTKB|E2QRU9	631	RAD21 "Uncharacterized protein	0.712	0.321	0.551	2.9e-55
UNIPROTKB|F1S1K0	631	LOC100738633 "Uncharacterized	0.712	0.321	0.551	2.9e-55
RGD|1594529	635	Rad21 "RAD21 homolog (S. pombe	0.712	0.319	0.551	2.9e-55
UNIPROTKB|O60216	631	RAD21 "Double-strand-break rep	0.712	0.321	0.547	3.4e-54

FB|FBgn0260987 vtd "verthandi" [Drosophila melanogaster (taxid:7227)]

 Score = 598 (215.6 bits), Expect = 4.1e-73, Sum P(2) = 4.1e-73
 Identities = 112/130 (86%), Positives = 121/130 (93%)

Query:     1 MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKVKMALRTSGHLL 60
             MFY   +LAKKGPLARIWLAAHWDKK+TKAHVFETNIEKSV+GILQPKVK+ALRTSGHLL
Sbjct:     1 MFYEHIILAKKGPLARIWLAAHWDKKITKAHVFETNIEKSVEGILQPKVKLALRTSGHLL 60

Query:    61 LGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPEDNREAAVNAITLPEVFHDFETT 120
             LGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPE +REA VNAITLPEVFHDF+T 
Sbjct:    61 LGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPEGHREANVNAITLPEVFHDFDTA 120

Query:   121 MPEINSVQFE 130
             +PE+N +  E
Sbjct:   121 LPELNDIDIE 130

GO:0006289 "nucleotide-excision repair" evidence=NAS

GO:0008278 "cohesin complex" evidence=ISS;IDA;NAS;IPI

GO:0007064 "mitotic sister chromatid cohesion" evidence=ISS;IMP;NAS

GO:0000775 "chromosome, centromeric region" evidence=NAS

GO:0007067 "mitosis" evidence=IMP

GO:0000228 "nuclear chromosome" evidence=IEA

GO:0005721 "centromeric heterochromatin" evidence=IDA

GO:0007052 "mitotic spindle organization" evidence=IMP

GO:0005705 "polytene chromosome interband" evidence=IDA

GO:0016322 "neuron remodeling" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

GO:0010628 "positive regulation of gene expression" evidence=IGI

ZFIN|ZDB-GENE-030131-994 rad21a "RAD21 homolog (S. pombe) a" [Danio rerio (taxid:7955)]

 Score = 557 (201.1 bits), Expect = 8.7e-65, Sum P(2) = 8.7e-65
 Identities = 102/127 (80%), Positives = 116/127 (91%)

Query:     1 MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKVKMALRTSGHLL 60
             MFYA FVL+K+GPLA+IWLAAHWDKKLTKAHVFE N+E SV+ I+ PKVKMALRTSGHLL
Sbjct:     1 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPKVKMALRTSGHLL 60

Query:    61 LGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPEDNREAAVNAITLPEVFHDFETT 120
             LGVVRIY RKAKYLLADCNEAF+KIKMAFRPG+VDLPEDNREAA NAITLPE FHDF+  
Sbjct:    61 LGVVRIYHRKAKYLLADCNEAFIKIKMAFRPGVVDLPEDNREAAYNAITLPEEFHDFDQP 120

Query:   121 MPEINSV 127
             +P+++ +
Sbjct:   121 LPDLDDI 127

GO:0000228 "nuclear chromosome" evidence=IEA

GO:0007064 "mitotic sister chromatid cohesion" evidence=IMP

GO:0043280 "positive regulation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=IMP

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IMP

ZFIN|ZDB-GENE-060503-223 rad21b "RAD21 homolog (S. pombe) b" [Danio rerio (taxid:7955)]

 Score = 553 (199.7 bits), Expect = 1.8e-64, Sum P(2) = 1.8e-64
 Identities = 101/127 (79%), Positives = 116/127 (91%)

Query:     1 MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKVKMALRTSGHLL 60
             MFYA FVL+K+GPLA+IWLAAHWDKKLTKAHVFE N+E SV+ I+ PKVKMALRTSGHLL
Sbjct:     1 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPKVKMALRTSGHLL 60

Query:    61 LGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPEDNREAAVNAITLPEVFHDFETT 120
             LGVVRIY RKAKYLLADCNEAF+KIKMAFRPG+VDLPE+NREAA NAITLPE FHDF+  
Sbjct:    61 LGVVRIYHRKAKYLLADCNEAFIKIKMAFRPGVVDLPEENREAAYNAITLPEEFHDFDQP 120

Query:   121 MPEINSV 127
             +P+++ +
Sbjct:   121 LPDLDDI 127

GO:0000228 "nuclear chromosome" evidence=IEA

UNIPROTKB|O93310 rad21 "Double-strand-break repair protein rad21 homolog" [Xenopus laevis (taxid:8355)]

 Score = 550 (198.7 bits), Expect = 3.7e-64, Sum P(2) = 3.7e-64
 Identities = 101/127 (79%), Positives = 116/127 (91%)

Query:     1 MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKVKMALRTSGHLL 60
             MFYA FVL+K+GPLA+IWLAAHWDKKLTKAHVFE N+E SV+ I+ PKVKMALRTSGHLL
Sbjct:     1 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIICPKVKMALRTSGHLL 60

Query:    61 LGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPEDNREAAVNAITLPEVFHDFETT 120
             LGVVRIY RKAKYLLADCNEAF+KIKMAFRPG+VDLPE+NREAA NAITLPE FHDF+  
Sbjct:    61 LGVVRIYHRKAKYLLADCNEAFIKIKMAFRPGVVDLPEENREAAYNAITLPEEFHDFDQP 120

Query:   121 MPEINSV 127
             +P+++ +
Sbjct:   121 LPDLDDI 127

GO:0071168 "protein localization to chromatin" evidence=ISS

UNIPROTKB|Q3SWX9 RAD21 "Double-strand-break repair protein rad21 homolog" [Bos taurus (taxid:9913)]

 Score = 575 (207.5 bits), Expect = 8.6e-56, P = 8.6e-56
 Identities = 118/212 (55%), Positives = 148/212 (69%)

Query:     1 MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKVKMALRTSGHLL 60
             MFYA FVL+K+GPLA+IWLAAHWDKKLTKAHVFE N+E SV+ I+ PKVKMALRTSGHLL
Sbjct:     1 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPKVKMALRTSGHLL 60

Query:    61 LGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPEDNREAAVNAITLPEVFHDFETT 120
             LGVVRIY RKAKYLLADCNEAF+KIKMAFRPG+VDLPE+NREAA NAITLPE FHDF+  
Sbjct:    61 LGVVRIYHRKAKYLLADCNEAFIKIKMAFRPGVVDLPEENREAAYNAITLPEEFHDFDQP 120

Query:   121 MPEINSVQFEPVKSLAPP-TKRLMHWKESGGVEKL-------FALPGRPIPAR-ALFKDA 171
             +P+++ +      SL     + +   +E G +  L       F +  R I    + F+D 
Sbjct:   121 LPDLDDIDVAQQFSLNQSRVEEITMREEVGNISILQENDFGDFGMDDREIMREGSAFEDD 180

Query:   172 NLLFEDGPLGRVCDPPQFMSSSTSMMNQMEID 203
             ++L   G    + +P Q  S+    +N +E +
Sbjct:   181 DMLASTGASNLLLEPEQSTSNLNEKINHLEYE 212

GO:0071168 "protein localization to chromatin" evidence=ISS

GO:0000775 "chromosome, centromeric region" evidence=IEA

GO:0034991 "nuclear meiotic cohesin complex" evidence=IEA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0007059 "chromosome segregation" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

MGI|MGI:108016 Rad21 "RAD21 homolog (S. pombe)" [Mus musculus (taxid:10090)]

 Score = 574 (207.1 bits), Expect = 1.1e-55, P = 1.1e-55
 Identities = 118/212 (55%), Positives = 147/212 (69%)

Query:     1 MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKVKMALRTSGHLL 60
             MFYA FVL+K+GPLA+IWLAAHWDKKLTKAHVFE N+E SV+ I+ PKVKMALRTSGHLL
Sbjct:     1 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPKVKMALRTSGHLL 60

Query:    61 LGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPEDNREAAVNAITLPEVFHDFETT 120
             LGVVRIY RKAKYLLADCNEAF+KIKMAFRPG+VDLPE+NREAA NAITLPE FHDF+  
Sbjct:    61 LGVVRIYHRKAKYLLADCNEAFIKIKMAFRPGVVDLPEENREAAYNAITLPEEFHDFDQP 120

Query:   121 MPEINSVQFEPVKSLAPP-TKRLMHWKESGGVEKL-------FALPGRPIPAR-ALFKDA 171
             +P+++ +      SL     + +   +E G +  L       F +  R I    + F+D 
Sbjct:   121 LPDLDDIDVAQQFSLNQSRVEEITMREEVGNISILQENDFGDFGMDDREIMREGSAFEDD 180

Query:   172 NLLFEDGPLGRVCDPPQFMSSSTSMMNQMEID 203
             ++L        + +P Q  S+    MN +E +
Sbjct:   181 DMLVSTSASNLLLEPEQSTSNLNEKMNHLEYE 212

GO:0000228 "nuclear chromosome" evidence=IEA

GO:0000775 "chromosome, centromeric region" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IEA

GO:0005694 "chromosome" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0006915 "apoptotic process" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0007059 "chromosome segregation" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0008278 "cohesin complex" evidence=IDA

GO:0034991 "nuclear meiotic cohesin complex" evidence=IDA

GO:0051301 "cell division" evidence=IEA

GO:0071168 "protein localization to chromatin" evidence=ISO

UNIPROTKB|E2QRU9 RAD21 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 570 (205.7 bits), Expect = 2.9e-55, P = 2.9e-55
 Identities = 117/212 (55%), Positives = 147/212 (69%)

Query:     1 MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKVKMALRTSGHLL 60
             MFYA FVL+K+GPLA+IWLAAHWDKKLTKAHVFE N+E SV+ I+ PKVKMALRTSGHLL
Sbjct:     1 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPKVKMALRTSGHLL 60

Query:    61 LGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPEDNREAAVNAITLPEVFHDFETT 120
             LGVVRIY RKAKYLLADCNEAF+KIKMAFRPG+VDLPE+NREAA NAITLPE FHDF+  
Sbjct:    61 LGVVRIYHRKAKYLLADCNEAFIKIKMAFRPGVVDLPEENREAAYNAITLPEEFHDFDQP 120

Query:   121 MPEINSVQFEPVKSLAPP-TKRLMHWKESGGVEKL-------FALPGRPIPAR-ALFKDA 171
             +P+++ +      SL     + +   +E G +  L       F +  R I    + F+D 
Sbjct:   121 LPDLDDIDVAQQFSLNQSRVEEITMREEVGNISILQENDFGDFGMDDREIMREGSAFEDD 180

Query:   172 NLLFEDGPLGRVCDPPQFMSSSTSMMNQMEID 203
             ++L        + +P Q  S+    +N +E +
Sbjct:   181 DMLVSTSASNLLLEPEQSTSNLNEKINHLEYE 212

GO:0071168 "protein localization to chromatin" evidence=IEA

GO:0034991 "nuclear meiotic cohesin complex" evidence=IEA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IEA

UNIPROTKB|F1S1K0 LOC100738633 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 570 (205.7 bits), Expect = 2.9e-55, P = 2.9e-55
 Identities = 117/212 (55%), Positives = 147/212 (69%)

Query:     1 MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKVKMALRTSGHLL 60
             MFYA FVL+K+GPLA+IWLAAHWDKKLTKAHVFE N+E SV+ I+ PKVKMALRTSGHLL
Sbjct:     1 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPKVKMALRTSGHLL 60

Query:    61 LGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPEDNREAAVNAITLPEVFHDFETT 120
             LGVVRIY RKAKYLLADCNEAF+KIKMAFRPG+VDLPE+NREAA NAITLPE FHDF+  
Sbjct:    61 LGVVRIYHRKAKYLLADCNEAFIKIKMAFRPGVVDLPEENREAAYNAITLPEEFHDFDQP 120

Query:   121 MPEINSVQFEPVKSLAPP-TKRLMHWKESGGVEKL-------FALPGRPIPAR-ALFKDA 171
             +P+++ +      SL     + +   +E G +  L       F +  R I    + F+D 
Sbjct:   121 LPDLDDIDVAQQFSLNQSRVEEITMREEVGNISILQENDFGDFGMDDREIMREGSAFEDD 180

Query:   172 NLLFEDGPLGRVCDPPQFMSSSTSMMNQMEID 203
             ++L        + +P Q  S+    +N +E +
Sbjct:   181 DMLVSTSASNLLLEPEQSTSNLNEKINHLEYE 212

GO:0000228 "nuclear chromosome" evidence=IEA

RGD|1594529 Rad21 "RAD21 homolog (S. pombe)" [Rattus norvegicus (taxid:10116)]

 Score = 570 (205.7 bits), Expect = 2.9e-55, P = 2.9e-55
 Identities = 117/212 (55%), Positives = 147/212 (69%)

Query:     1 MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKVKMALRTSGHLL 60
             MFYA FVL+K+GPLA+IWLAAHWDKKLTKAHVFE N+E SV+ I+ PKVKMALRTSGHLL
Sbjct:     1 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPKVKMALRTSGHLL 60

Query:    61 LGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPEDNREAAVNAITLPEVFHDFETT 120
             LGVVRIY RKAKYLLADCNEAF+KIKMAFRPG+VDLPE+NREAA NAITLPE FHDF+  
Sbjct:    61 LGVVRIYHRKAKYLLADCNEAFIKIKMAFRPGVVDLPEENREAAYNAITLPEEFHDFDQP 120

Query:   121 MPEINSVQFEPVKSLAPP-TKRLMHWKESGGVEKL-------FALPGRPIPAR-ALFKDA 171
             +P+++ +      SL     + +   +E G +  L       F +  R I    + F+D 
Sbjct:   121 LPDLDDIDVAQQFSLNQSRVEEITMREEVGNISILQENDFGDFGMDDREIMREGSAFEDD 180

Query:   172 NLLFEDGPLGRVCDPPQFMSSSTSMMNQMEID 203
             ++L        + +P Q  S+    +N +E +
Sbjct:   181 DMLVSTSASNLLLEPEQSTSNLNEKINHLEYE 212

GO:0005634 "nucleus" evidence=ISO

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IEA;ISO

GO:0008278 "cohesin complex" evidence=ISO

GO:0034991 "nuclear meiotic cohesin complex" evidence=IEA;ISO

GO:0071168 "protein localization to chromatin" evidence=IEA;ISO

GO:0005730 "nucleolus" evidence=ISO

UNIPROTKB|O60216 RAD21 "Double-strand-break repair protein rad21 homolog" [Homo sapiens (taxid:9606)]

 Score = 560 (202.2 bits), Expect = 3.4e-54, P = 3.4e-54
 Identities = 116/212 (54%), Positives = 146/212 (68%)

Query:     1 MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKVKMALRTSGHLL 60
             MFYA FVL+K+GPLA+IWLAAHWDKKLTKAHVFE N+E SV+ I+ PKVKMALRTSGHLL
Sbjct:     1 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPKVKMALRTSGHLL 60

Query:    61 LGVVRIYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPEDNREAAVNAITLPEVFHDFETT 120
             LGVVRIY RKAKYLLADCNEAF+KIKMAFRPG+VDLPE+NREAA NAITLPE FHDF+  
Sbjct:    61 LGVVRIYHRKAKYLLADCNEAFIKIKMAFRPGVVDLPEENREAAYNAITLPEEFHDFDQP 120

Query:   121 MPEINSVQFEPVKSLAPP-TKRLMHWKESGGVEKL-------FALPGRPIPAR-ALFKDA 171
             +P+++ +      SL     + +   +E G +  L       F +  R I    + F+D 
Sbjct:   121 LPDLDDIDVAQQFSLNQSRVEEITMREEVGNISILQENDFGDFGMDDREIMREGSAFEDD 180

Query:   172 NLLFEDGPLGRVCDPPQFMSSSTSMMNQMEID 203
             ++L        + +  Q  S+    +N +E +
Sbjct:   181 DMLVSTTTSNLLLESEQSTSNLNEKINHLEYE 212

GO:0006915 "apoptotic process" evidence=IEA

GO:0007059 "chromosome segregation" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0034991 "nuclear meiotic cohesin complex" evidence=IEA

GO:0000775 "chromosome, centromeric region" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0071168 "protein localization to chromatin" evidence=IMP

GO:0006302 "double-strand break repair" evidence=TAS

GO:0006310 "DNA recombination" evidence=TAS

GO:0007131 "reciprocal meiotic recombination" evidence=TAS

GO:0000087 "M phase of mitotic cell cycle" evidence=TAS

GO:0000236 "mitotic prometaphase" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0007091 "metaphase/anaphase transition of mitotic cell cycle" evidence=TAS

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0008278 "cohesin complex" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	285
pfam04825	110	pfam04825, Rad21_Rec8_N, N terminus of Rad21 / Rec	2e-57

>gnl|CDD|218280 pfam04825, Rad21_Rec8_N, N terminus of Rad21 / Rec8 like protein

 Score =  179 bits (456), Expect = 2e-57
 Identities = 65/112 (58%), Positives = 83/112 (74%), Gaps = 3/112 (2%)

Query: 1   MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKVKMALRTSGHLL 60
           MFY+  +L KKGPLA +WLAA  +KKL++  + E +I KS + IL P+  +ALR SG LL
Sbjct: 1   MFYSHELLTKKGPLATVWLAATLEKKLSRKQILEVDIPKSCEEILNPEAPIALRLSGQLL 60

Query: 61  LGVVRIYSRKAKYLLADCNEAFVKIKMAFR-PGMVDLPEDNREAAVNAITLP 111
            GVVRIYSRK +YLL DCNEA  ++K AFR PG +DLPE  R+A+ NA+TLP
Sbjct: 61  YGVVRIYSRKVEYLLEDCNEALSRLKKAFRIPGQLDLPE--RKASPNALTLP 110

This family represents a conserved N-terminal region found in eukaryotic cohesins of the Rad21, Rec8 and Scc1 families. Members of this family mediate sister chromatid cohesion during mitosis and meiosis, as part of the cohesin complex. Cohesion is necessary for homologous recombination (including double-strand break repair) and correct chromatid segregation. These proteins may also be involved in chromosome condensation. Dissociation at the metaphase to anaphase transition causes loss of cohesion and chromatid segregation. Length = 110

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	285
KOG1213|consensus	614		100.0
PF04825	111	Rad21_Rec8_N: N terminus of Rad21 / Rec8 like prot	100.0

>KOG1213|consensus

Probab=100.00  E-value=2.3e-47  Score=385.16  Aligned_cols=150  Identities=61%  Similarity=0.937  Sum_probs=144.9

Q ss_pred             CccchhhhhccCChhhHHHhhhccCccchhhhhccCHHHHHHHhcCCCCcchhhhhhccccceEEEEecchhHHHHHHHH
Q psy8283           1 MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKVKMALRTSGHLLLGVVRIYSRKAKYLLADCNE   80 (285)
Q Consensus         1 MFYS~~lLskkgpLa~IWLAAt~~kKLsKk~Il~vdI~~sce~Il~P~~p~ALRLSg~LLlGVVRIYsrKv~YLl~Dc~~   80 (285)
                      |||||.||+||||||+|||||||+|||+|+||++|||+++|+.|++|.+|||||+|||||+||||||+|||+||++|||+
T Consensus         1 MFYs~~vLakKGPLa~IWlAAh~~kKL~K~qv~~tdI~~sve~Il~p~~~lALRtSghLLlGVVRIYSrK~~YLl~Dcne   80 (614)
T KOG1213|consen    1 MFYSHFVLAKKGPLAKIWLAAHWEKKLSKAQVFETDIPQSVEEILQPKVPLALRTSGHLLLGVVRIYSRKVKYLLDDCNE   80 (614)
T ss_pred             CcchhhhHhhcCchhhhhHHhHHhhhcchhheeeccHHHHHHHHhCcccceehhhhcccceeeEEeehhhHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCcCCCCccccccccccccCCccCCcccCCC-CCCccCcCcccccCCCc--cccceeccCCC
Q psy8283          81 AFVKIKMAFRPGMVDLPEDNREAAVNAITLPEVFHDFETTMP-EINSVQFEPVKSLAPPT--KRLMHWKESGG  150 (285)
Q Consensus        81 ~l~kik~afr~~~vdLp~~~~~A~~~aITLPe~~~d~d~~lP-~ld~~D~~~~~~lnqsr--~edITLkEd~g  150 (285)
                      ++.|||++||+++||+|..+..+...+|||||.|.++|..+| +++++|+..+|++.+.+  .+++++.+++.
T Consensus        81 al~kIk~afr~~~vd~p~~~~~~~~~siTLPE~~~d~d~~l~~~~~~~~~~~~~~~~~~~~~lde~~~~~~~~  153 (614)
T KOG1213|consen   81 ALLKIKMAFRSGQVDLPELAPRLPTHSITLPETFEDDDFDLPDEITDIDLYDDFSIPQSRNNLDEITLLEDIE  153 (614)
T ss_pred             HHHHHHHHhccccccCCCcccccccccccchhhhccccccccccccccccccccCccccccchhhhhcccCCC
Confidence            999999999999999999888888999999999999999888 78889988889999988  89999999886

>PF04825 Rad21_Rec8_N: N terminus of Rad21 / Rec8 like protein; InterPro: IPR006910 This domain represents a conserved N-terminal region found in eukaryotic cohesins of the Rad21, Rec8 and Scc1 families

Probab=100.00  E-value=8.4e-41  Score=273.06  Aligned_cols=111  Identities=53%  Similarity=0.917  Sum_probs=109.9

Q ss_pred             CccchhhhhccCChhhHHHhhhccCccchhhhhccCHHHHHHHhcCCCCcchhhhhhccccceEEEEecchhHHHHHHHH
Q psy8283           1 MFYAQFVLAKKGPLARIWLAAHWDKKLTKAHVFETNIEKSVDGILQPKVKMALRTSGHLLLGVVRIYSRKAKYLLADCNE   80 (285)
Q Consensus         1 MFYS~~lLskkgpLa~IWLAAt~~kKLsKk~Il~vdI~~sce~Il~P~~p~ALRLSg~LLlGVVRIYsrKv~YLl~Dc~~   80 (285)
                      ||||++||+|+|+|++||+|||+++||+|++|+++||+++|++|++|++|+|||+|||||+||||||+||++||++||+.
T Consensus         1 MFy~~~iL~k~~~l~~vWlaat~~~kl~k~~i~~vdI~~~c~~I~~~~~~~sLRlss~LL~Gvv~Iy~kKv~yLl~D~~~   80 (111)
T PF04825_consen    1 MFYSHDILSKKGPLATVWLAATLGKKLSKKQILQVDIPKICEEIIEPENPLSLRLSSQLLYGVVRIYSKKVEYLLSDCNE   80 (111)
T ss_pred             CCccHHHHhcCCcHHHHHHHHhccCCCCHHHHHhCCHHHHHHHHhCCCcCeeHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCcCCCCccccccccccccC
Q psy8283          81 AFVKIKMAFRPGMVDLPEDNREAAVNAITLP  111 (285)
Q Consensus        81 ~l~kik~afr~~~vdLp~~~~~A~~~aITLP  111 (285)
                      ++.+|++++++..+|+|+++..|++++||||
T Consensus        81 ~~~~l~~~~~~~~~dl~~~~~~~~~~~it~p  111 (111)
T PF04825_consen   81 LLSKLKRAFRPKKIDLPKDKTKASRNAITLP  111 (111)
T ss_pred             HHHHHHHHhcccccCCCccccCCChhhccCc
Confidence            9999999999999999999999999999998

Rad21/Rec8 like proteins mediate sister chromatid cohesion during mitosis and meiosis, as part of the cohesin complex []. Cohesion is necessary for homologous recombination (including double-strand break repair) and correct chromatid segregation. These proteins may also be involved in chromosome condensation. Dissociation at the metaphase to anaphase transition causes loss of cohesion and chromatid segregation [].; GO: 0005515 protein binding

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00