Psyllid ID: psy8304

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590---
Protein Sequence
MKTYKIVSTQLQITTGSQFAEKTEVPNVSKVEEQPKQAQNREDAESTDQVASETSSDQESQQSAPKHGYVDRPPPPPAPIVAPPRPHPNGRHPSHGKPQFNHKLGGVYHGPPPPPPPLSAAKPPPVQPEAMDKSGYGPPPPPPLLAPAPDPWPNAVADTPKIVSLDVKCEKNSMKVFISFDKPFFGIVFSKGHYSNVNCVHLPAGLGRTSANFEIGIHACGTSGNTENGLYGYGADAGSGTYFENIIVIQYDPQVQEVWDQARKLRCTWHDQYEKSVTFRPFPVDMLDVVRADFAGDNVGCWMQIQVGKGPWASEVSGLVKIGQTMTMVLAIKDDDSKFDMLVRNCMAHDGKRAPIQLVDQRGCVTRSKLMSRFTKIKNFGASASVLSYAHFQAFKFPDSMEVHFQCTIQICRYQCPDQCSSDSGDLHPQHTQLLEAHHSSSNVEATYGNNLPIDVFLHGGSGGQPRDERRVRRHRRDTGEKEDIGVNKIIKVVSTGDLTFALDDSNSTSQTMIFPTNMEDNSGMICMTTIGFSATLFVLLGILVVSCLVSACLCIRLRPFSNKTSQKTMSVSYTNPIVSVKKTSKSSFYTSS
Secondary Structure (PSIPRED)
ccEEEEEEEcEEEccccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccEEEEEEcccccEEEEEEcccccccccEEcccccccEEEEEEEccccccccccccccccccccccccccEEEEEEEEEcccccccccccEEEEEEEEccccccccccccccccccccEEccccccccEEEEEEEEcccccccccEEEEEEccEEEEEEEEEcccccccEEEEEEEEEccccccEEEEccccccccccccccEEEcccccccccEEEEEEEEEEEcccccEEEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccEEEEEEEccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEEEEEEccHHHHHHccEEEEEEccccccccHccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccEEEEEEEEcccccEEEEEEccccccccEEEcccccccEEEEEEEccccccccccccccccccccccccEEEEEEEEEEEcccEEEEEccEEEEEEEEEcccccEEccccccccccccEEEEEccccccEEEEEEccccccccccEEEEEEccEEEEEEEEcccccccEEEEEEEEEEcccccEEEEEEcccccccHHHccccccccccccccEEEEEEEEEEEEcccccEEEEEEEEEEEccccccccccccccccccccccEccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEccccccccccccccccccccccccEccccEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHcccccccEEEEcccccccccccccccEcccc
Coil and Loop (DISEMBL)
MKTYKIVSTQLQittgsqfaektevpnvskveeqpkqaqnredaestdqvasetssdqesqqsapkhgyvdrpppppapivapprphpngrhpshgkpqfnhklggvyhgppppppplsaakpppvqpeamdksgygppppppllapapdpwpnavadtpkivSLDVkceknsmkvfisfdkpffgivfskghysnvncvhlpaglgrtsanfeigihacgtsgntenglygygadagsgtyfeNIIVIQYDPQVQEVWDQARKLRCTWHDQyeksvtfrpfpvdmLDVVradfagdnvgcwmqiqvgkgpwaseVSGLVKIGQTMTMVLAIKDDDSKFDMLVRNCmahdgkrapiqlvdqrgcvtrSKLMSRFTKIKNFGASASVLSYAHfqafkfpdsmevHFQCTIQicryqcpdqcssdsgdlhpqhTQLLEahhsssnveatygnnlpidvflhggsggqprderrvrrhrrdtgekedigvNKIIKVVSTGdltfalddsnstsqtmifptnmednsgmicmTTIGFSATLFVLLGILVVSCLVSAclcirlrpfsnktsqktmsvsytnpivsvkktskssfytss
Flexible Loop (DISEMBL)
mktykivstqlqittgsqfaektevpnvskveeqpkqaqnredaestdQVASetssdqesqqsapkhgyvdrpPPPPAPIVAPPRPHPNGRHPSHGKPQFNHKLGGVYHGPPPPPPPLSAAKPPPVQPEAMDKSGYGPPPPPPLLAPAPDPWPNAVADTPKIVSLDVKCEKNSMKVFISFDKPFFGIVFSKGHYSNVNCVHLPAGLGRTSANFEIGIHACGTSGNTENGLYGYGADAGSGTYFENIIVIQYDPQVQEVWDQARKLRCTWHDQYeksvtfrpfpvDMLDVVRADFAGDNVGCWMQIQVGKGPWASEVSGLVKIGQTMTMVLAIKDDDSKFDMLVRNCMAhdgkrapiqlvdqrGCVTRSKLMSRFTKIKNFGASASVLSYAHFQAFKFPDSMEVHFQCTIQICRYQCPDQCSSDSGDLHPQHTQLLEAHHSSSNVEATYGNNLPIDVFLhggsggqprderrvrrhrrdtgekedigvnkiikvVSTGDLTFALDDSNSTSQTMIFPTNMEDNSGMICMTTIGFSATLFVLLGILVVSCLVSACLCIRLRpfsnktsqktmsvsytnpivsvkktskssfytss
Low Complexity Region (SEG)
MKTYKIVSTQLQITTGSQFAEKTEVPNVSKVEEQPKQAQNREDAESTDQVAsetssdqesqqsAPKHGYVDrpppppapivapprphpNGRHPSHGKPQFNHKLGGVYHGppppppplsaakpppvqpEAMDKSGYGppppppllapapdpwpNAVADTPKIVSLDVKCEKNSMKVFISFDKPFFGIVFSKGHYSNVNCVHLPAGLGRTSANFEIGIHACGTSGNTENGLYGYGADAGSGTYFENIIVIQYDPQVQEVWDQARKLRCTWHDQYEKSVTFRPFPVDMLDVVRADFAGDNVGCWMQIQVGKGPWASEVSGLVKIGQTMTMVLAIKDDDSKFDMLVRNCMAHDGKRAPIQLVDQRGCVTRSKLMSRFTKIKNFGASASVLSYAHFQAFKFPDSMEVHFQCTIQICRYQCPDQCSSDSGDLHPQHTQLLEAHHSSSNVEATYGNNLPIDVFLHGGSGGQPrderrvrrhrrDTGEKEDIGVNKIIKVVSTGDLTFALDDSNSTSQTMIFPTNMEDNSGMICMTTIGFSATLFVLLGILVVSCLVSACLCIRLRPFSNKTSQKTMSVSYTNPIvsvkktskssfytss
Disordered region (IsUnstruct)
************************************************************************************************************************************************************ADTPKIVSLDVKCEKNSMKVFISFDKPFFGIVFSKGHYSNVNCVHLPAGLGRTSANFEIGIHACGTSGNTENGLYGYGADAGSGTYFENIIVIQYDPQVQEVWDQARKLRCTWHDQYEKSVTFRPFPVDMLDVVRADFAGDNVGCWMQIQVGKGPWASEVSGLVKIGQTMTMVLAIKDDDSKFDMLVRNCMAHDGKRAPIQLVDQRGCVTRSKLMSRFTKIKNFGASASVLSYAHFQAFKFPDSMEVHFQCTIQICRYQCPD****************************TYGNNLPIDVFLH*************************IGVNKIIKVVSTGDLTFALD********MIFPTNMEDNSGMICMTTIGFSATLFVLLGILVVSCLVSACLCIRLRPF********************************
Disordered Region (DISOPRED)
****K**********************************************************************************************************************************************APDPWPNAVADTPKIVSLDVKCEKNSMKVFISFDKPFFGIVFSKGHYSNVNCVH*****GRTSANFEIGIHACGTSGNTENGLYGYGADAGSGTYFENIIVIQYDPQVQEVWDQARKLRCTWHDQYEKSVTFR************DFAGDNVGCWMQIQVGKGPWASEVSGLVKIGQTMTMVLAIKDDDSKFDMLVRNCMAHDGKRAPIQLVDQRGCVTRSKLMSRFTKIKNFGASASVLSYAHFQAFKFPDSMEVHFQCTIQICRYQCP********************************************************************GVNKIIKVVSTG***************************MICMTTIGFSATLFVLLGILVVSCLVSACLCI********************************FY***
Disordered Region (DISEMBL)
********TQLQITTGSQFAEK***********************************************VDRPPPPPAPIVAPPRPHPNGRHPSHGKPQFNHKLGGVYHGPPPPPPPLSAAKPPPVQPEAMDKSGYGPPPPPPLLAPAPDPWPNAVADTPKIVSLDVKCEKNSMKVFISFDKPFFGIVFSKGHYSNVNCVHLPAGLGRTSANFEIGIHACGTSGNTENGLYGYGADAGSGTYFENIIVIQYDPQVQEVWDQARKLRCTWHDQYEKSVTFRPFPVDMLDVVRADFAGDNVGCWMQIQVGKGPWASEVSGLVKIGQTMTMVLAIKDDDSKFDMLVRNCMAHDGKRAPIQLVDQRGCVTRSKLMSRFTKIKNFGASASVLSYAHFQAFKFPDSMEVHFQCTIQICRYQCPDQCSSDSGDLHPQHTQLLEAHHSSSNVEATYGNNLPIDVFLHGGS****************TGEKEDIGVNKIIKVVSTGDLTFALDDSNSTSQTMIFPTNMEDNSGMICMTTIGFSATLFVLLGILVVSCLVSACLCIRLRPFSNKTSQKTMSVSYTNPIVSVKK**********
Disordered Region (DISPRO)
MKTYKIVSTQLQITTGSQFAEKTEVPNVSKV**************************************VDRPPPPPAPIVAPPRPHPNGRHPSHGKPQFNHKLGGVYHGPPPPPPP****************SGYGPPPPPPLLAPAPDPWPNAVADTPKIVSLDVKCEKNSMKVFISFDKPFFGIVFSKGHYSNVNCVHLPAGLGRTSANFEIGIHACGTSGNTENGLYGYGADAGSGTYFENIIVIQYDPQVQEVWDQARKLRCTWHDQYEKSVTFRPFPVDMLDVVRADFAGDNVGCWMQIQVGKGPWASEVSGLVKIGQTMTMVLAIKDDDSKFDMLVRNCMAHDGKRAPIQLVDQRGCVTRSKLMSRFTKIKNFGASASVLSYAHFQAFKFPDSMEVHFQCTIQICRYQCPDQCS*************************************************************EDIGVNKIIKVVSTGDLTF****************NMEDNSGMICMTTIGFSATLFVLLGILVVSCLVSACLCIRLRPFSNKTSQKTMSVSYT******************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKTYKIVSTQLQITTGSQFAEKTEVPNVSKVEEQPKQAQNREDAESTDQVASETSSDQESQQSAPKHGYVDRPPPPPAPIVAPPRPHPNGRHPSHGKPQFNHKLGGVYHGPPPPPPPLSAAKPPPVQPEAMDKSGYGPPPPPPLLAPAPDPWPNAVADTPKIVSLDVKCEKNSMKVFISFDKPFFGIVFSKGHYSNVNCVHLPAGLGRTSANFEIGIHACGTSGNTENGLYGYGADAGSGTYFENIIVIQYDPQVQEVWDQARKLRCTWHDQYEKSVTFRPFPVDMLDVVRADFAGDNVGCWMQIQVGKGPWASEVSGLVKIGQTMTMVLAIKDDDSKFDMLVRNCMAHDGKRAPIQLVDQRGCVTRSKLMSRFTKIKNFGASASVLSYAHFQAFKFPDSMEVHFQCTIQICRYQCPDQCSSDSGDLHPQHTQLLEAHHSSSNVEATYGNNLPIDVFLHGGSGGQPRDERRVRRHRRDTGEKEDIGVNKIIKVVSTGDLTFALDDSNSTSQTMIFPTNMEDNSGMICMTTIGFSATLFVLLGILVVSCLVSACLCIRLRPFSNKTSQKTMSVSYTNPIVSVKKTSKSSFYTSS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

No hits with e-value below 0.001 by BLAST

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	593
FB|FBgn0004511	699	dy "dusky" [Drosophila melanog	0.691	0.586	0.704	5.9e-161
FB|FBgn0066365	611	dyl "dusky-like" [Drosophila m	0.443	0.430	0.700	1.8e-116
FB|FBgn0002577	682	m "miniature" [Drosophila mela	0.423	0.368	0.460	7.6e-72
FB|FBgn0036985	2284	zye "zye" [Drosophila melanoga	0.472	0.122	0.302	1.2e-32
FB|FBgn0035543	604	CG15020 [Drosophila melanogast	0.482	0.473	0.290	1.5e-32
WB|WBGene00021396	601	cutl-24 [Caenorhabditis elegan	0.197	0.194	0.346	1.1e-16
WB|WBGene00010893	647	cutl-9 [Caenorhabditis elegans	0.332	0.304	0.262	6.3e-10
WB|WBGene00017421	390	cutl-29 [Caenorhabditis elegan	0.408	0.620	0.246	7.3e-09
WB|WBGene00013180	403	cutl-10 [Caenorhabditis elegan	0.384	0.565	0.24	1.7e-08
WB|WBGene00013960	625	cutl-8 [Caenorhabditis elegans	0.408	0.387	0.232	1.7e-08

FB|FBgn0004511 dy "dusky" [Drosophila melanogaster (taxid:7227)]

 Score = 1550 (550.7 bits), Expect = 5.9e-161, Sum P(2) = 5.9e-161
 Identities = 312/443 (70%), Positives = 347/443 (78%)

Query:   156 VADTPKIVSLDVKCEKNSMKVFISFDKPFFGIVFSKGHYSNVNCVHLPAGLGRTSANFEI 215
             V D PKIVSLDVKCEKN MKVF+ FDKPF GIVFSKGHYSN+NCVHLP+GLGR+SA+F+I
Sbjct:   242 VQDMPKIVSLDVKCEKNGMKVFVQFDKPFNGIVFSKGHYSNMNCVHLPSGLGRSSASFDI 301

Query:   216 GIHACGTSGNTENGLYGYGADAGS---GTYFENIIVIQYDPQVQEVWDQARKLRCTWHDQ 272
             G+H CGT+GNT+N   GYG +AGS   GTYFENIIVIQYDPQVQEVWDQARKLRCTWHDQ
Sbjct:   302 GLHECGTAGNTDNYGQGYGHEAGSTGAGTYFENIIVIQYDPQVQEVWDQARKLRCTWHDQ 361

Query:   273 YEKSVTFRPFPVDMLDVVRADFAGDNVGCWMQIQVGKGPWASEVSGLVKIGQTMTMVLAI 332
             YEKSVTFRPFPVDMLDVVRADFAGDNVGCWMQIQVGKGPWASEVSGLVKIGQTMTMVLAI
Sbjct:   362 YEKSVTFRPFPVDMLDVVRADFAGDNVGCWMQIQVGKGPWASEVSGLVKIGQTMTMVLAI 421

Query:   333 KDDDSKFDMLVRNCMAHDGKRAPIQLVDQRGCVTRSKLMSRFTKIKNFGASASVLSYAHF 392
             KDDDSKFDMLVRNC+AHDGKRAPIQLVDQRGCVTR KLMSRFTKIKNFGASASVLSYAHF
Sbjct:   422 KDDDSKFDMLVRNCVAHDGKRAPIQLVDQRGCVTRPKLMSRFTKIKNFGASASVLSYAHF 481

Query:   393 QAFKFPDSMEVHFQCTIQICRYQCPDQCSSDSGDLHPQHTQLLEAHHSSSNVEATYGN-- 450
             QAFKFPDSMEVHFQCTIQICRY CP+QCS++        T L + HH     E+ YG   
Sbjct:   482 QAFKFPDSMEVHFQCTIQICRYHCPEQCSAE--------TNLQDVHHLQVGPESQYGPPP 533

Query:   451 NLPIDVFLHGGSGGQPXXXXXXXXXXXDTGEKEDIGVNKIIKVVSTGDLTFALDDS---N 507
              L +D +    + G+               E + +G+N+IIKVVS+GDLTFA+DD    N
Sbjct:   534 QLHVDAYHVASAIGKRRDERRVQRRARAVAEPQ-VGLNRIIKVVSSGDLTFAIDDQAGGN 592

Query:   508 STS------------QTMIFPTNMEDNSGMICMTTIGFSATLFVLLGILVVSCLVSACLC 555
              +S            QTM+FP   E   G+ICMTT GF+ TL VLLGILV SCL SA L 
Sbjct:   593 GSSTNGANSGVDRSPQTMVFPLREE---GLICMTTPGFAITLIVLLGILVTSCLTSAVLY 649

Query:   556 IRLRPFSNKT-SQKTMSVSYTNP 577
             +RLRPFS+   S K  +V++TNP
Sbjct:   650 VRLRPFSSFAGSAKERAVAFTNP 672

GO:0005886 "plasma membrane" evidence=NAS

GO:0007622 "rhythmic behavior" evidence=NAS

GO:0007623 "circadian rhythm" evidence=TAS

GO:0007476 "imaginal disc-derived wing morphogenesis" evidence=IGI;IMP;NAS

GO:0016021 "integral to membrane" evidence=ISS

GO:0005214 "structural constituent of chitin-based cuticle" evidence=ISS

GO:0000902 "cell morphogenesis" evidence=IGI

FB|FBgn0066365 dyl "dusky-like" [Drosophila melanogaster (taxid:7227)]

 Score = 1026 (366.2 bits), Expect = 1.8e-116, Sum P(2) = 1.8e-116
 Identities = 185/264 (70%), Positives = 219/264 (82%)

Query:   158 DTPKIVSLDVKCEKNSMKVFISFDKPFFGIVFSKGHYSNVNCVHLPAGLGRTSANFEIGI 217
             D+P+I  L V+CEK  M+V I FD+PF+G++FSKG YS+ +CVHL  G G  SA FEI +
Sbjct:    80 DSPQIKHLQVQCEKTHMRVNIEFDRPFYGMIFSKGFYSDPHCVHLKPGTGHLSATFEIFL 139

Query:   218 HACGTSGNTENGLYGYGADAGSGTYFENIIVIQYDPQVQEVWDQARKLRCTWHDQYEKSV 277
             ++CG + +  +   GYGA   SG+Y EN I+IQYDP VQEVWDQARKLRCTW+D YEK+V
Sbjct:   140 NSCGMTSSANHNAAGYGAPTPSGSYVENTIIIQYDPYVQEVWDQARKLRCTWYDFYEKAV 199

Query:   278 TFRPFPVDMLDVVRADFAGDNVGCWMQIQVGKGPWASEVSGLVKIGQTMTMVLAIKDDDS 337
             TFRPF VDML  V A+F GDN+ CWMQIQVGKGPWASEVSG+VKIGQTMTMVLAIKDD++
Sbjct:   200 TFRPFQVDMLHAVTANFLGDNLQCWMQIQVGKGPWASEVSGIVKIGQTMTMVLAIKDDEN 259

Query:   338 KFDMLVRNCMAHDGKRAPIQLVDQRGCVTRSKLMSRFTKIKNFGASASVLSYAHFQAFKF 397
             KFDMLVRNC+AHDGKRAPIQLVDQ GCV R K+MS+F KIKNFG SASV+S+A+FQAFKF
Sbjct:   260 KFDMLVRNCVAHDGKRAPIQLVDQNGCVVRPKIMSKFQKIKNFGPSASVVSFAYFQAFKF 319

Query:   398 PDSMEVHFQCTIQICRYQCPD-QC 420
             PDSM VHFQC IQ+CRY CP+ +C
Sbjct:   320 PDSMNVHFQCVIQVCRYNCPEPKC 343

GO:0005214 "structural constituent of chitin-based cuticle" evidence=ISS

GO:0007160 "cell-matrix adhesion" evidence=IMP

GO:0016476 "regulation of embryonic cell shape" evidence=IMP

GO:0003383 "apical constriction" evidence=IMP

GO:0016324 "apical plasma membrane" evidence=IDA

GO:0007015 "actin filament organization" evidence=IMP

FB|FBgn0002577 m "miniature" [Drosophila melanogaster (taxid:7227)]

 Score = 650 (233.9 bits), Expect = 7.6e-72, Sum P(2) = 7.6e-72
 Identities = 121/263 (46%), Positives = 171/263 (65%)

Query:   160 PKIVSLDVKCEKNSMKVFISFDKPFFGIVFSKGHYSNVNCVHLPAGLGRTSANFEIGIHA 219
             P IVSL+V C K+ M V ++F  PF GIV SKG +S+  CV++P   G+T  +F I    
Sbjct:    46 PNIVSLEVMCGKDHMDVHLTFSHPFEGIVSSKGQHSDPRCVYVPPSTGKTFFSFRISYSR 105

Query:   220 CGTSGNTENGLYGYGADAGSGTYFENIIVIQYDPQVQEVWDQARKLRCTWHDQYEKSVTF 279
             CGT  +             +G ++EN +V+QYD  + EVWD+A++LRC W + YEK+ + 
Sbjct:   106 CGTKPDL------------NGQFYENTVVVQYDKDLLEVWDEAKRLRCEWFNDYEKTASK 153

Query:   280 RPFPVDMLDVVRADFAGDNVGCWMQIQVGKGPWASEVSGLVKIGQTMTMVLAIKDDDSKF 339
              P  +  LDV++ DF GDNV CWM+IQ GKGPWA  VSG+V +G T+T+V+AI D   +F
Sbjct:   154 PPMVIADLDVIQLDFRGDNVDCWMEIQHGKGPWAPPVSGIVPLGSTLTLVVAINDYRGEF 213

Query:   340 DMLVRNCMAHDGKRAPIQLVDQRGCVTRSKLMSRFTKIKNFGASASVLSYAHFQAFKFPD 399
             DM V++C+A DG    I L D+ GCV R K++SRF K +     A+V++YA F AFKFPD
Sbjct:   214 DMRVKSCVASDGSGHVINLSDEFGCVLRPKMISRFLKARAPDERATVITYAFFHAFKFPD 273

Query:   400 SMEVHFQCTIQICRYQCPDQCSS 422
             ++ VH +C ++ICR+ C D C +
Sbjct:   274 ALSVHIKCKVEICRHGCLDHCQN 296

GO:0016021 "integral to membrane" evidence=ISS

GO:0007476 "imaginal disc-derived wing morphogenesis" evidence=IGI;IMP;NAS

GO:0005214 "structural constituent of chitin-based cuticle" evidence=ISS

GO:0000902 "cell morphogenesis" evidence=IGI

GO:0009913 "epidermal cell differentiation" evidence=IMP

GO:0035017 "cuticle pattern formation" evidence=IMP

GO:0016324 "apical plasma membrane" evidence=IDA

GO:0007160 "cell-matrix adhesion" evidence=IMP

GO:0003383 "apical constriction" evidence=IMP

GO:0016476 "regulation of embryonic cell shape" evidence=IMP

GO:0007015 "actin filament organization" evidence=IMP

FB|FBgn0036985 zye "zye" [Drosophila melanogaster (taxid:7227)]

 Score = 373 (136.4 bits), Expect = 1.2e-32, P = 1.2e-32
 Identities = 92/304 (30%), Positives = 151/304 (49%)

Query:   162 IVSLDVKCEKNS-MKVFISFDKPFFGIVFSKGHYSNVNCVHLPAGLGRTSANFEIGIHAC 220
             I  +DVKC++ S M V + F + F G+++S+G++S+  C ++       S  F +    C
Sbjct:    55 IEKIDVKCDQGSGMMVEVEFSEDFEGVIYSQGYFSDPKCNYVKGDRSGRSFTFTVPYDGC 114

Query:   221 GTSGNTENGLYGYGADAGSGTYFENIIVIQYDPQVQEVWDQARKLRCTWHDQYEKSVTFR 280
             G+  +         +   S    ENI++IQ D  +Q  +D ARK+ C+  D+ EK+V F+
Sbjct:   115 GSKPSC--------SVCAS---IENILIIQDDRDIQNSFDIARKISCSRGDEREKTVYFK 163

Query:   281 PFPVDMLDVVRADFAGDNVGCWMQIQVGKGPWASEVSGLVKIGQTMTMVLAIKDDDSKFD 340
             PF VDML+V+  D     V CWM+I  G  P    + G + +G  +T  + +K  +  +D
Sbjct:   164 PFVVDMLEVISVDTPSGPVECWMEIGTGTPPNVKPIQGTLTLGTDITFTINVKHSEQAWD 223

Query:   341 MLVRNCMAHDGK----RAP--IQLVDQRGCVTRSKLMSRFTKIKNFGASASVLSYAHFQA 394
             + +  C A D      R    +QL D+RGC  + K+   + K +  G+S +   Y   +A
Sbjct:   224 INILQCYASDDMDFEARTTKRLQLSDKRGCSIKEKIFGEWRKFEA-GSSLTSTYYNTLKA 282

Query:   395 FKFPDSMEVHFQCTIQICRYQCPDQ--CSSDSGDLHPQHT---QLLEAHHSSSNVEATYG 449
             F+FPD  +V+ +C I++C   C     C S      P+ +   Q L+ H  S       G
Sbjct:   283 FRFPDRSQVYLKCDIELCNGACKRDYTCGSLRSLTCPEGSTDPQCLQDHLISPKPRCYPG 342

Query:   450 NNLP 453
             +N P
Sbjct:   343 SNEP 346

GO:0005214 "structural constituent of chitin-based cuticle" evidence=ISS

GO:0016476 "regulation of embryonic cell shape" evidence=IMP

GO:0016324 "apical plasma membrane" evidence=IDA

GO:0003383 "apical constriction" evidence=IMP

GO:0007160 "cell-matrix adhesion" evidence=IMP

GO:0007015 "actin filament organization" evidence=IMP

FB|FBgn0035543 CG15020 [Drosophila melanogaster (taxid:7227)]

 Score = 361 (132.1 bits), Expect = 1.5e-32, Sum P(2) = 1.5e-32
 Identities = 89/306 (29%), Positives = 158/306 (51%)

Query:   161 KIVSLDVKCEKNSMKVFISFDKPFFGIVFSKGHYSNVNCVHLPAGLGRTSANFEIGIHAC 220
             ++  ++ +C+ + MK+ I F+  F G+++S G+  + +C+++  G GR    F I ++ C
Sbjct:   216 RVQHIEAECQDDYMKIRIGFNGSFSGLLYSAGYAYDPDCMYIN-GSGRDYYEFYIQLNRC 274

Query:   221 GTSGNTENGLYGYGADAGSGTYFENIIVIQYDPQVQEVWDQARKLRCTWHDQYEKSVTFR 280
             GT G  +N L        +  +  N + +QY+P ++E +D+  K+ C +   + K+VTF 
Sbjct:   275 GTLG--KNSLQEESRKNPTN-FMWNTVTVQYNPLIEEEYDEHFKVTCEYGYDFWKTVTF- 330

Query:   281 PF-PVDMLDVVRADFAGDNVGCWMQIQVGKGPWASEVSGLVKIGQTMTMVLAIKDDDSKF 339
             PF  V++       F      C+M+IQ G G     V+G V++G  +T+++ ++     F
Sbjct:   331 PFLDVEVATGNPVVFTLSPPECYMEIQNGYGIGGPRVTGPVRVGDPLTLIIYMRSKYDGF 390

Query:   340 DMLVRNCMAHDGKRAPIQLVDQRGCVTRSKLMSRFTKIKNFGASASVLSYAHFQAFKFPD 399
             D++V +C AH+G    IQL+DQ GC    KL+SRF    +         YA+ + F+F  
Sbjct:   391 DIVVNDCYAHNGANKRIQLIDQHGCPVDDKLISRFRGSWSDSGVYETQVYAYMKTFRFTG 450

Query:   400 SMEVHFQCTIQICRYQCPDQCSSDSGDLHPQHTQLLEA--HHSSSNVEATYGNNLPIDVF 457
             S  ++ +C +++C  +CP Q         P H + L+A     +SN+ AT   N+ I   
Sbjct:   451 SPALYIECDVRMCHGRCPSQ---------PCHWRNLKAVTKRDTSNMTAT---NISIPPL 498

Query:   458 LHGGSG 463
                G G
Sbjct:   499 SADGEG 504

GO:0005214 "structural constituent of chitin-based cuticle" evidence=ISS

GO:0016021 "integral to membrane" evidence=ISM

GO:0000902 "cell morphogenesis" evidence=ISS

WB|WBGene00021396 cutl-24 [Caenorhabditis elegans (taxid:6239)]

 Score = 198 (74.8 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
 Identities = 43/124 (34%), Positives = 74/124 (59%)

Query:   303 MQIQVGKGPWASEVSGLVKIGQTMTMVLAIK---DDDSKFDMLVRNCMAHDGKR-APIQL 358
             ++IQ G+GP+A  V+  +KIG  +++V+  K   ++  +FDM V +C A DGK    +Q+
Sbjct:   399 LEIQRGEGPFAPPVTTPIKIGDNISLVVKAKSYLNETDQFDMFVHSCFATDGKGDTKVQM 458

Query:   359 VDQRGCVTRSKLMSRFTKIKNFGASASVLSYAHFQAFKFPDSMEVHFQCTIQIC-RYQCP 417
             +D+ GCV R +  S   + K+  +  ++  Y   +AFKFP   +V+F CTI+   + + P
Sbjct:   459 IDENGCVIRLEFASPLHRAKD--SENTMFYYLLIKAFKFPGPDDVYFSCTIEFTPKTKAP 516

Query:   418 DQCS 421
             + CS
Sbjct:   517 NICS 520

GO:0016021 "integral to membrane" evidence=IEA

WB|WBGene00010893 cutl-9 [Caenorhabditis elegans (taxid:6239)]

 Score = 136 (52.9 bits), Expect = 6.3e-10, Sum P(3) = 6.3e-10
 Identities = 56/213 (26%), Positives = 89/213 (41%)

Query:   246 IIVIQYDPQVQEVWDQARKLRCTWHDQYEKSVTFRPFPVDMLDVVRADFAGDNVGCWMQI 305
             I V+ +        D+A  ++C + +  EK+V+     V+M D    +   +   C   I
Sbjct:   286 IAVVSFHDSFITKLDKAYHIQCAYAEA-EKTVS-TDLDVNMTDEQEINGTVEPPSCDYLI 343

Query:   306 QVGKGPWASEVSGLVKIGQTMTMVLAIKDD-DSKFDMLVRNCMAHDGKRAPIQLVDQRGC 364
                 G   S  + LV  G+ +      K    +K  MLV  C   DG     +++DQ GC
Sbjct:   344 SDQNGN--SVQNSLV--GELVRHQWVCKGGLTNKLKMLVHQCYVKDGAGQQFEVIDQHGC 399

Query:   365 VTRSKLMSRFTKIKNFGASASVLSYAHFQAFKFPDSMEVHFQCTIQICRY---QCPDQCS 421
              T  +LM +       G SA V +Y     FKFPD   V F+CTI  C     +C D   
Sbjct:   400 -TLDQLMLQTPTYSEDGMSAQVDAYI----FKFPDRSTVDFRCTITFCSVDDAECLDMTP 454

Query:   422 SDSGDLHPQHTQLLEAHHSSSNVEATYGNNLPI 454
                G  +    +   + H  S++ + + N+L +
Sbjct:   455 PKCGANNNLLRRKKRSSHGLSSM-SLHANSLTV 486

GO:0016021 "integral to membrane" evidence=IEA

WB|WBGene00017421 cutl-29 [Caenorhabditis elegans (taxid:6239)]

 Score = 162 (62.1 bits), Expect = 7.3e-09, P = 7.3e-09
 Identities = 68/276 (24%), Positives = 120/276 (43%)

Query:   162 IVSLDVKCEKNSMKVFISFDKPFFGIVFSKGHYSNVNCVHLPAGLGRTSANFEIGIHACG 221
             I    V C  ++++V ++F K F G V ++       C     G G  S +  I +    
Sbjct:    20 ITDKKVTCTSSNIEVALTFAKSFSGGVLTENPRKYEQCRW--KGNGSNSMSINIPLF--- 74

Query:   222 TSGNTENGLYGYGADAGSGTYFENIIVIQYDPQVQEVWDQARKLRCTWHDQYEKSVTFRP 281
                +T+  +    A+  SGTY   ++V   D  + + +  A  ++C +  Q + ++T  P
Sbjct:    75 --NSTKCAVV---ANETSGTYSIKLLVSPVDGLIVDGFS-AINVKCIYATQ-DITLTLPP 127

Query:   282 F--PVDMLDVVRADF-------AGDNVGCWMQIQVGKGPWASEVSGLVKIGQTMTMVLAI 332
                  + L +   +        +G +    MQI  G G   S V     +GQ +T+ +A+
Sbjct:   128 IFNGTNALQITAMNDDNSVVTGSGGSPALTMQILEGHGISGSPVVKAA-VGQRITLDIAL 186

Query:   333 KDDDSKFDMLVRNCMAHDGKRAP---IQLVDQRGCVTRSKLMSRFTKIKNFGASASVLS- 388
             ++  + +D  V +C AHDG  +P   I ++D  GC  R   +SR   +    A  +    
Sbjct:   187 QNT-AIYDFYVHSCYAHDGSNSPDASINIIDSNGCGVR---LSRAIDVPAMSAQPTPNGP 242

Query:   389 ---YAHFQAFKFPDSMEVHFQCTIQICRYQCP-DQC 420
                Y H   F+F  +  VHF+C ++ C   C  +QC
Sbjct:   243 KHVYLHMYGFQFTSNNFVHFECQVKPCIKSCHREQC 278

GO:0016021 "integral to membrane" evidence=IEA

WB|WBGene00013180 cutl-10 [Caenorhabditis elegans (taxid:6239)]

 Score = 159 (61.0 bits), Expect = 1.7e-08, P = 1.7e-08
 Identities = 60/250 (24%), Positives = 102/250 (40%)

Query:   166 DVKCEKNSMKVFISFDKPFFGIVFSKGHYSNVNCVHLPAGLGRTSANFEIGIHACGTSGN 225
             +V C ++ +K+     +PF G +F KG      CV            FE+   AC     
Sbjct:    32 EVDCMEDRVKLSFKTQRPFHGRIFVKGMVDKQACVRDFVTSQAKDVTFELENGACNMRRQ 91

Query:   226 TENGLYGYGADAGSGTYFENIIVIQYDPQVQEVWDQARKLRCTWHDQYEKSVTFRPFPVD 285
                G    G +         +I+  +   + +V D+A +  C ++ + +K VT + F V 
Sbjct:    92 RMLGPEKRGMEMSM-----TVIISFHSTFITKV-DRAYRCTC-FYMEADKVVTNK-FDVS 143

Query:   286 MLDVVRADFAGDNVGCWMQIQVGKGPWASEVSGLVKIGQTMTMVLAIKDDDSKFDMLVRN 345
             ML             C   ++  +      +    K+G+T+  V   + D   F MLV +
Sbjct:   144 MLPTTDLIDTARMPLCTYSVR--RDSITGPIVEFAKVGETVYHVWNCESD--MFSMLVHS 199

Query:   346 CMAHDG---KRAPIQLVDQRGCVTRSKLMSRFTKIKNFGASASVLSYAHFQAFKFPDSME 402
             C   DG   +R P  L+D+ GC     ++   T  K+     + ++YA    FKF D + 
Sbjct:   200 CFVDDGNGDERKP--LLDEHGCAIDPLILPDLTYNKD-----NNVAYAQVNTFKFADKVS 252

Query:   403 VHFQCTIQIC 412
              +FQC +  C
Sbjct:   253 TYFQCAVSTC 262

GO:0016021 "integral to membrane" evidence=IEA

WB|WBGene00013960 cutl-8 [Caenorhabditis elegans (taxid:6239)]

 Score = 162 (62.1 bits), Expect = 1.7e-08, P = 1.7e-08
 Identities = 62/267 (23%), Positives = 112/267 (41%)

Query:   154 NAVA-DTPKIVSLDVKCEKNSMKVFISFDKPFFGIVFSKGHYSNVNCVHLPAGLGRT-SA 211
             NA++ D   I   D++C ++ +++++   K F G +++KG     +C     G  +T   
Sbjct:    18 NAISIDNEIIGEPDIECLEDEIRIWVKTRKIFAGRIYAKGRAELEDCYKDDFGNQKTRKP 77

Query:   212 NFEIGIHACGTSGNTENGLYGYGADAGSGTYFENIIVIQYDPQVQEVWDQARKLRCTWHD 271
             +F++   ACG              D   G Y+   +V+ + P      DQA  ++C + +
Sbjct:    78 HFDLQFGACGMKSLRS-------VDP-RGMYYGITVVVSFHPLFITKVDQAYHVKC-FFE 128

Query:   272 QYEKSVTFRPFPVDMLDVVRADFAGDNVGCWMQI------QVGKGPWASEVSGLVKIGQT 325
             +  K +T     V M+     +      GC   I      ++  G  A  V    ++G+ 
Sbjct:   129 EANKGLTAE-LGVSMIPTTELEARHGIPGCTYSIHRSTIDELDAGRPAGNVIQFARVGER 187

Query:   326 MTMVLAIKDDDSKFDMLVRNCMAHDGKRAPIQLVDQRGCVTRSKLMSRFTKIKNFGASAS 385
             +        +D  + +L+ NC   DG      ++D +GC     L+   T I+   +S  
Sbjct:   188 VLHQWHC--NDQMYGVLINNCYVTDGFGKKADVIDDKGCPIDPILI---TGIRY--SSDL 240

Query:   386 VLSYAHFQAFKFPDSMEVHFQCTIQIC 412
               +YA    FKF D   V F C +Q+C
Sbjct:   241 QRAYAESSVFKFADKPGVWFFCQVQMC 267

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	593
pfam00100	252	pfam00100, Zona_pellucida, Zona pellucida-like dom	9e-32
smart00241	252	smart00241, ZP, Zona pellucida (ZP) domain	4e-15
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	4e-07
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	2e-06
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	2e-06
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	1e-05
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	6e-05
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	7e-05
pfam07174	297	pfam07174, FAP, Fibronectin-attachment protein (FA	7e-05
pfam07174	297	pfam07174, FAP, Fibronectin-attachment protein (FA	7e-05
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	1e-04
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	1e-04
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	2e-04
pfam07174	297	pfam07174, FAP, Fibronectin-attachment protein (FA	2e-04
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	2e-04
pfam06346	160	pfam06346, Drf_FH1, Formin Homology Region 1	3e-04
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	4e-04
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	5e-04
pfam04652	315	pfam04652, DUF605, Vta1 like	5e-04
pfam04652	315	pfam04652, DUF605, Vta1 like	6e-04
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	6e-04
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	8e-04
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	9e-04
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	0.001
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	0.001
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	0.001
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	0.001
pfam05518	753	pfam05518, Totivirus_coat, Totivirus coat protein	0.001
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	0.002
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	0.002
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	0.002
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	0.002
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	0.002
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	0.002
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	0.003
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	0.003
pfam05518	753	pfam05518, Totivirus_coat, Totivirus coat protein	0.003
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	0.003
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	0.003
pfam04554	57	pfam04554, Extensin_2, Extensin-like region	0.003
pfam10349	111	pfam10349, WWbp, WW-domain ligand protein	0.003
pfam10152	147	pfam10152, DUF2360, Predicted coiled-coil domain-c	0.003
pfam03276	582	pfam03276, Gag_spuma, Spumavirus gag protein	0.003
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	0.004
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	0.004
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	0.004
PHA03378	991	PHA03378, PHA03378, EBNA-3B; Provisional	0.004

>gnl|CDD|215716 pfam00100, Zona_pellucida, Zona pellucida-like domain

 Score =  123 bits (309), Expect = 9e-32
 Identities = 50/272 (18%), Positives = 93/272 (34%), Gaps = 38/272 (13%)

Query: 168 KCEKNSMKVFISFDKPFF-GIVFSKGHYSNVNCVHLPAGLGRTSANFEIGIHACGTSGNT 226
           +C +++M V +S D  F  G+  S  H  + +C   P     T A F   + +CGT+   
Sbjct: 1   QCTEDTMTVVVSKDLTFTPGLYLSSLHLGDPSCR--PVETNSTHAIFRFPLSSCGTTRQR 58

Query: 227 ENGLYGYGADAGSGTYFENIIVIQYDPQVQEV----WDQARKLRCTWHDQYEKSVTFRPF 282
                        G  +EN IV Q    V        D+   + C+    Y         
Sbjct: 59  TGD----------GIVYENEIVSQPSVSVGPPITRDSDRRLPVSCS----YTSRSVSVSS 104

Query: 283 PVDMLDVVRADFAGDNVG-CWMQIQVGKGPWASEV-SGLVKIGQTMTMVLAIKDDDSKFD 340
              +  V     +    G     +++      +      +++G  + +   +        
Sbjct: 105 VAVLPTVPPVSPSPSGEGSLTFSLRLYTDDSYTSDYPVTIELGDPLYVEATVSVLPRSDP 164

Query: 341 --MLVRNCMAHDGKRAP----IQLVDQRGCVTRSKLMSRFTKIKNFGASASVLSYAHFQA 394
             + + +C A  G          L+ + GC       S    + +    +       F+A
Sbjct: 165 LVLFLDSCWATPGPDPDSSPRYDLI-ENGCPVDGDSTS---TLSHPVGESHTA-RFSFKA 219

Query: 395 FKFP-DSMEVHFQCTIQICR---YQCPDQCSS 422
           F+FP DS +V+  C++++C      C   CS 
Sbjct: 220 FRFPGDSSQVYIHCSVKVCDKSDPSCKPTCSR 251

Length = 252

>gnl|CDD|214579 smart00241, ZP, Zona pellucida (ZP) domain

 Score = 75.1 bits (185), Expect = 4e-15
 Identities = 50/264 (18%), Positives = 87/264 (32%), Gaps = 29/264 (10%)

Query: 168 KCEKNSMKVFISFDKPFFGIVFSKGHY-SNVNCVHLPAGLGRTSANFEIGIHACGTSGNT 226
           +C ++ M V +S D  F G +  KG    + +C            +FE+ ++ CGT    
Sbjct: 1   QCGEDQMVVSVSTDLLFPGGINVKGLTLGDPSCRPQFTDATSAFVSFEVPLNGCGTR-RQ 59

Query: 227 ENGLYGYGADAGSGTYFENIIVIQYDPQ--VQEVWDQARKLRCTWHDQYEKSVTFRPFPV 284
            N           G  + N +V+       +      A   +C +    E         V
Sbjct: 60  VNP---------DGIVYSNTLVVSPFHPGFITRDDRAAYHFQCFYP---ENEKVSLNLDV 107

Query: 285 DMLD-VVRADFAGDNVGCWMQIQVGKGPWASEV-SGLVKIGQTMTMVLAIK-DDDSKFDM 341
             +     +  +   + C  ++      + S   S    +G  +         DD    +
Sbjct: 108 STIPPTELSSVSEGPLTCSYRLYKD-DSFGSPYQSADYVLGDPVYHEWECDGADDPPLGL 166

Query: 342 LVRNCMAHDGKRA----PIQLVDQRGCVTRSKLMSRFTKIKNFGASASVLSYAHFQAFKF 397
           LV NC A  G          ++D  GC     L S       + ++    +    + FKF
Sbjct: 167 LVDNCYATPGPDPSSGPKYFIID-NGCPVDGYLDS----TIPYNSNPLHRARFSVKVFKF 221

Query: 398 PDSMEVHFQCTIQICRYQCPDQCS 421
            D   V+F C I++C       C 
Sbjct: 222 ADRSLVYFHCQIRLCDKDDGSSCD 245

ZP proteins are responsible for sperm-adhesion fo the zona pellucida. ZP domains are also present in multidomain transmembrane proteins such as glycoprotein GP2, uromodulin and TGF-beta receptor type III (betaglycan). Length = 252

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 53.0 bits (127), Expect = 4e-07
 Identities = 33/140 (23%), Positives = 38/140 (27%), Gaps = 30/140 (21%)

Query: 51   ASETSSDQESQQSAPKHGYVDR--PPPPPAPIVAPPRPHPNGRHPSHGKPQFNHKLGGVY 108
            +     D   Q + P+    DR  P  P  P   PP  H     P    P  N       
Sbjct: 2584 SRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPP 2643

Query: 109  HGPPPPPPPLSAAKPP-----------------------PVQPEAMDKSG-----YGPPP 140
               PPP  P     P                        P +  A    G       PPP
Sbjct: 2644 PTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPP 2703

Query: 141  PPPLLAPAPDPWPNAVADTP 160
            PPP   PAP    +A    P
Sbjct: 2704 PPPTPEPAPHALVSATPLPP 2723

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 50.7 bits (121), Expect = 2e-06
 Identities = 30/96 (31%), Positives = 32/96 (33%), Gaps = 7/96 (7%)

Query: 64   APKHGYVDRPPP--PPAPIVAPPRPHPNGRHPSHGKPQFNHKLGGVYHGPPPPPPPLSAA 121
            AP      RPP   P A   AP RP P  R       +           P  PP P +  
Sbjct: 2857 APGGDVRRRPPSRSPAAKPAAPARP-PVRRLARPAVSRSTESFALPPDQPERPPQPQAPP 2915

Query: 122  KPPPVQPEAMDKSGYGPPPPPPL----LAPAPDPWP 153
             P P            PPPPPP     LAP  DP  
Sbjct: 2916 PPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAG 2951

Length = 3151

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 50.5 bits (121), Expect = 2e-06
 Identities = 27/135 (20%), Positives = 35/135 (25%), Gaps = 10/135 (7%)

Query: 20  AEKTEVPNVSKVEEQPKQAQNREDAESTDQVASETSSDQESQQSAPKHGYVDRPPPPPAP 79
           A K E       E QP+         +   ++ E    Q  Q+           P PP  
Sbjct: 129 APKPEPQPPQAPESQPQPQT-----PAQKMLSLEEVEAQLQQRQQAPQ-----LPQPPQQ 178

Query: 80  IVAPPRPHPNGRHPSHGKPQFNHKLGGVYHGPPPPPPPLSAAKPPPVQPEAMDKSGYGPP 139
           ++    P      P  G P+          G P    P      P   P         P 
Sbjct: 179 VLPQGMPPRQAAFPQQGPPEQPPGYPQPPQGHPEQVQPQQFLPAPSQAPAQPPLPPQLPQ 238

Query: 140 PPPPLLAPAPDPWPN 154
            PPPL  P       
Sbjct: 239 QPPPLQQPQFPGLSQ 253

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 48.0 bits (114), Expect = 1e-05
 Identities = 31/123 (25%), Positives = 42/123 (34%), Gaps = 21/123 (17%)

Query: 35   PKQAQNREDAESTDQVASETSSDQESQQSAPKHGYVDRPPPPPAPIVAPPRPHPNGRHPS 94
            P ++   + A          +    S+ +       D+P  PP P  APP P P  + P 
Sbjct: 2867 PSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQP-QAPPPPQPQPQPPP 2925

Query: 95   HGKPQFNHKLGGVYHGPPPPPPPLSAAKPPPVQPEAMDKSGYGPPPPPPLLAPAPDPWPN 154
              +PQ           PPPPPPP      PP+ P         P          P PW  
Sbjct: 2926 PPQPQ-----------PPPPPPPRP---QPPLAPTT------DPAGAGEPSGAVPQPWLG 2965

Query: 155  AVA 157
            A+ 
Sbjct: 2966 ALV 2968

Length = 3151

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 45.9 bits (109), Expect = 6e-05
 Identities = 18/116 (15%), Positives = 27/116 (23%), Gaps = 15/116 (12%)

Query: 55  SSDQESQQSAPKHGYVDRPPPPPAPIVAPPRPHPNGRHPSHGKPQFNHKLGGVYHGPPPP 114
           ++  E+   A K          PA               +                   P
Sbjct: 367 AAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAA------------SAP 414

Query: 115 PPPLSAAKPPPVQPEAMDKSGYGPPPPPPLLAPAPDPWPNAVADTPKIVSLDVKCE 170
             P +AA P PV   A          P    A             P+ V++ V+  
Sbjct: 415 AAPPAAAPPAPVAAPAAAA---PAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVA 467

Length = 618

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 45.7 bits (108), Expect = 7e-05
 Identities = 23/84 (27%), Positives = 26/84 (30%)

Query: 72   RPPPPPAPIVAPPRPHPNGRHPSHGKPQFNHKLGGVYHGPPPPPPPLSAAKPPPVQPEAM 131
             PPPPP      P    +      G          +   P PP  P   A P      A 
Sbjct: 2700 DPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPAR 2759

Query: 132  DKSGYGPPPPPPLLAPAPDPWPNA 155
              +  GPP P P  APA  P    
Sbjct: 2760 PPTTAGPPAPAPPAAPAAGPPRRL 2783

Length = 3151

>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)

 Score = 44.9 bits (106), Expect = 7e-05
 Identities = 23/50 (46%), Positives = 24/50 (48%), Gaps = 9/50 (18%)

Query: 111 PPPPPPPLSAAKPPPVQPEAMDKSGYGPPPPPPLLAPAPDPWPNAVADTP 160
           PPPPPP  +AA P P  P         PPPPPP   PAP P     A  P
Sbjct: 43  PPPPPPSTAAAAPAPAAP---------PPPPPPAAPPAPQPDDPNAAPPP 83

This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297

>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)

 Score = 44.9 bits (106), Expect = 7e-05
 Identities = 23/84 (27%), Positives = 26/84 (30%), Gaps = 16/84 (19%)

Query: 73  PPPPPAPIVAPPRPHPNGRHPSHGKPQFNHKLGGVYHGPPPPPPPLSAAKPPPVQPEAMD 132
           PPPPP+   A P P      P                 P  PP P          P   D
Sbjct: 44  PPPPPSTAAAAPAPAAPPPPP----------------PPAAPPAPQPDDPNAAPPPPPAD 87

Query: 133 KSGYGPPPPPPLLAPAPDPWPNAV 156
            +   PPP  P   P P P P  +
Sbjct: 88  PNAPPPPPVDPNAPPPPAPEPGRI 111

This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 45.2 bits (107), Expect = 1e-04
 Identities = 27/124 (21%), Positives = 38/124 (30%), Gaps = 8/124 (6%)

Query: 46  STDQVASETSSDQESQQSAPKHGYVDRPPPPPAPIVAPPRP------HPNGRHPSHGKPQ 99
            +D       +      +  +      PPP P                 +   P+    +
Sbjct: 44  VSDSAELAAVTVVAGAAACDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPARE 103

Query: 100 FNHKLGGVYHGPPPPPPPLSAAKPPPVQPEA--MDKSGYGPPPPPPLLAPAPDPWPNAVA 157
            +    G     PPPP P  A+ PP   P+   M +    P PPP    PA    P AVA
Sbjct: 104 GSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVA 163

Query: 158 DTPK 161
               
Sbjct: 164 SDAA 167

Length = 1352

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 44.3 bits (105), Expect = 1e-04
 Identities = 31/137 (22%), Positives = 45/137 (32%), Gaps = 16/137 (11%)

Query: 28  VSKVEEQPKQAQNREDAESTDQVASE-TSSDQESQQSAPKHGYVDRPPPP-PAPIVAPPR 85
           V +V   P  AQ  E A  + Q   +   +  + +Q   +      PP   P P    P+
Sbjct: 68  VHRVNHAPANAQEHEAARPSPQHQYQPPYASAQPRQPVQQPPEAQVPPQHAPRPAQPAPQ 127

Query: 86  PHPNGRH-PSHGKPQFNHKLGGVYHGPPPPPPPLSAAKPPPVQPEAMDKSGYGPPPPPPL 144
           P     + P   +P        V     P P P+ +A  P  Q            P  P+
Sbjct: 128 PVQQPAYQPQPEQPL----QQPVSPQVAPAPQPVHSAPQPAQQAFQ---------PAEPV 174

Query: 145 LAPAPDPWPNAVADTPK 161
            AP P+P         K
Sbjct: 175 AAPQPEPVAEPAPVMDK 191

Length = 333

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 44.2 bits (104), Expect = 2e-04
 Identities = 23/112 (20%), Positives = 29/112 (25%), Gaps = 6/112 (5%)

Query: 54   TSSDQESQQSAPKHGYVDRPPPPP-APIVAPPRPHPNGRHPS----HGKPQFNHKLGGVY 108
                + +Q S+P      R   P    + +   P P    P               G   
Sbjct: 2668 RRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAA 2727

Query: 109  HGPPPPPPPLSAAKPPPVQPEAMDKSGYGPPPPPPLLAPAPDPWPNAVADTP 160
                 P  P + A P      A    G   P  PP  A  P P P A     
Sbjct: 2728 ARQASPALPAAPAPPAVPAGPATP-GGPARPARPPTTAGPPAPAPPAAPAAG 2778

Length = 3151

>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)

 Score = 43.0 bits (101), Expect = 2e-04
 Identities = 27/91 (29%), Positives = 29/91 (31%), Gaps = 27/91 (29%)

Query: 63  SAPKHGYVDRPPPPPAPIVAPPRPHPNGRHPSHGKPQFNHKLGGVYHGPPPPPPPLSAAK 122
           + P     D  PPPP P  A   P P                       PPPPPP +A  
Sbjct: 32  ALPATANADPAPPPPPPSTAAAAPAPA---------------------APPPPPPPAAPP 70

Query: 123 PPPVQPEAMDKSGYGPPPPPPLLAPAPDPWP 153
            P              PPPPP    AP P P
Sbjct: 71  APQPDDPN------AAPPPPPADPNAPPPPP 95

This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 44.4 bits (105), Expect = 2e-04
 Identities = 21/118 (17%), Positives = 31/118 (26%), Gaps = 4/118 (3%)

Query: 38  AQNREDAESTDQVASETSSDQESQQSAPKHGYVDRPPPPPAPIVAPP----RPHPNGRHP 93
           A  R          +  ++ + + +   +    D       P   P      P       
Sbjct: 794 AAFRRPGRLRRSGPAADAASRTASKRKSRSHTPDGGSESSGPARPPGAAARPPPARSSES 853

Query: 94  SHGKPQFNHKLGGVYHGPPPPPPPLSAAKPPPVQPEAMDKSGYGPPPPPPLLAPAPDP 151
           S  KP          +G   P PP   A+P    P     +      P P   PAP  
Sbjct: 854 SKSKPAAAGGRARGKNGRRRPRPPEPRARPGAAAPPKAAAAAPPAGAPAPRPRPAPRV 911

Length = 1352

>gnl|CDD|148139 pfam06346, Drf_FH1, Formin Homology Region 1

 Score = 41.5 bits (97), Expect = 3e-04
 Identities = 40/103 (38%), Positives = 43/103 (41%), Gaps = 14/103 (13%)

Query: 65  PKHGYVDRPPPPPAPIVA---PPRPHPNGRHPSHGKPQFNHKLGGVYHGPPPPPPPLSAA 121
           P  G    PPPPP P VA   PP P P         P     L G    PPPPP P  A 
Sbjct: 41  PLPGGAAIPPPPPLPGVAGIPPPPPLPGATAIPPPPP-----LPGAAGIPPPPPLPGGAG 95

Query: 122 KPPPVQPEAMDKSGYGPPPPP----PLLAPAPDPWPNAVADTP 160
            PPP  P  +      PPPPP    P + P P P+P A    P
Sbjct: 96  IPPP--PPPLPGGAAVPPPPPLPGGPGVPPPPPPFPGAPGIPP 136

This region is found in some of the Diaphanous related formins (Drfs). It consists of low complexity repeats of around 12 residues. Length = 160

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.9 bits (101), Expect = 4e-04
 Identities = 23/92 (25%), Positives = 32/92 (34%), Gaps = 12/92 (13%)

Query: 77  PAPIVAPPRPHPNGRHPSHGKPQFNHKLGGVYHGPPPPPPPLSAAKPPPVQPEAMDKSGY 136
           P P   P +P      P    P            P   P   +AA  PP +P   + +  
Sbjct: 362 PVPAPQPAKPTAAAPSPVRPTP-----------APSTRPKAAAAANIPPKEPVR-ETATP 409

Query: 137 GPPPPPPLLAPAPDPWPNAVADTPKIVSLDVK 168
            P PP P+  P P    +A   T   + +D K
Sbjct: 410 PPVPPRPVAPPVPHTPESAPKLTRAAIPVDEK 441

Length = 585

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 42.9 bits (101), Expect = 5e-04
 Identities = 31/149 (20%), Positives = 44/149 (29%), Gaps = 24/149 (16%)

Query: 26  PNVSKVEEQPKQAQNREDAESTDQVASETSSDQESQQSAPKHGYVDRPPPPPAPIVAPPR 85
           P+       P   +    + S+     E+SS   S  S    G    P P P+   +P R
Sbjct: 300 PSSPGSGPAPSSPRASSSSSSS----RESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSR 355

Query: 86  PHPNGRHPSHGKPQFNHKLGGVYHGPPP-------------------PPPPLSAAKPPPV 126
           P P     S  K     +                                   A +P P 
Sbjct: 356 PPPPADPSSPRKRPRPSRAPSSPAASAGRPTRRRARAAVAGRARRRDATGRFPAGRPRPS 415

Query: 127 QPEAMDKSGYGPPPPPPLLAPAPDPWPNA 155
             +A   SG       PLL P+ +PWP +
Sbjct: 416 PLDAGAASG-AFYARYPLLTPSGEPWPGS 443

Length = 1352

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 42.4 bits (100), Expect = 5e-04
 Identities = 26/118 (22%), Positives = 34/118 (28%), Gaps = 9/118 (7%)

Query: 32  EEQPKQAQNREDAESTDQVASETSSDQESQQSAPKHGYVDRPPPPPAPIVAPPRPHPNGR 91
           +     + N    E  D  ++  S    S    P        P  P+    PP P     
Sbjct: 162 DVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPAPSS--- 218

Query: 92  HPSHGKPQFNHKLGGVYHGPPPPPPPLSAAKPPPVQPEAMDKSGYGPPPPPPLLAPAP 149
                 P  + +       PP P  P     PPP   +    S   P PP     PAP
Sbjct: 219 -FQSDTPPPSPESPTNPSPPPGPAAP-----PPPPVQQVPPLSTAKPTPPSASATPAP 270

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 42.0 bits (99), Expect = 6e-04
 Identities = 20/119 (16%), Positives = 31/119 (26%), Gaps = 18/119 (15%)

Query: 42  EDAESTDQVASETSSDQESQQSAPKHGYVDRPPPPPAPIVAPPRPHPNGRHPSHGKPQFN 101
           EDA+     +  +   +++  ++          P   P  +P  P           P   
Sbjct: 159 EDADVATTNSDNSFPGEDADPASA--------SPSDPPSSSPGVPSFPSPPEDPSSPS-- 208

Query: 102 HKLGGVYHGPPPPPPPLSAAKPPPVQPEAMDKSGYGPPPPPPLLAPAPDPWPNAVADTP 160
                     PP P    +  PPP        +   PP P     P     P      P
Sbjct: 209 ------DSSLPPAPSSFQSDTPPPSPES--PTNPSPPPGPAAPPPPPVQQVPPLSTAKP 259

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 42.7 bits (101), Expect = 6e-04
 Identities = 19/137 (13%), Positives = 30/137 (21%), Gaps = 9/137 (6%)

Query: 37  QAQNREDAESTDQVASETSSDQESQQSAPKHGYVDRPPPPPAPIVAPPRPHPNGRHPSHG 96
            A       +    A    +     Q AP             P   PP+       PS  
Sbjct: 675 GAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPA 734

Query: 97  ------KPQFNHKLGGVYHGPPPPPPPLSAAKPPPVQPEAMDKSGYGPPPPPPLLAPAPD 150
                  P            P  PPPP + A                P     +      
Sbjct: 735 ADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAP---PPSPPSEEEEMAEDDAP 791

Query: 151 PWPNAVADTPKIVSLDV 167
              +      + V++++
Sbjct: 792 SMDDEDRRDAEEVAMEL 808

Length = 824

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 42.1 bits (99), Expect = 8e-04
 Identities = 26/98 (26%), Positives = 32/98 (32%), Gaps = 9/98 (9%)

Query: 58  QESQQSAPKHGYVDRPPPPPAPIVAPPRPHPNGRHPSHGKPQFNHKLGGVYHGPPPPPPP 117
              Q        V      PAP  AP +P    + P    P    +  G+    PPPPP 
Sbjct: 202 GYPQPPQGHPEQVQPQQFLPAPSQAPAQPPLPPQLPQQPPPLQQPQFPGLSQQMPPPPPQ 261

Query: 118 LSAAKPPPVQPEAMDKSGYGPPPPPPLLAPAPDPWPNA 155
               +  P QP+A          PPP   P P P    
Sbjct: 262 PPQQQQQPPQPQAQ---------PPPQNQPTPHPGLPQ 290

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.8 bits (98), Expect = 9e-04
 Identities = 19/96 (19%), Positives = 25/96 (26%), Gaps = 10/96 (10%)

Query: 71  DRPPPPPAPIVAPPRPHPNGRHPSHGKP---------QFNHKLGGVYHGPPPPPPPL-SA 120
             P  P A   A          P+   P         Q + +  G    P P P    +A
Sbjct: 401 APPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAA 460

Query: 121 AKPPPVQPEAMDKSGYGPPPPPPLLAPAPDPWPNAV 156
           A  P         +     P     A AP P  +  
Sbjct: 461 AARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDP 496

Length = 700

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 41.8 bits (98), Expect = 0.001
 Identities = 27/101 (26%), Positives = 29/101 (28%), Gaps = 8/101 (7%)

Query: 71   DRPPPPPAPIVAPPRPHPNGRH------PSHGKPQFNHKLGGVYHGPPPPPPPLSAAKPP 124
            DR  PPP P   P  P    R       P   +P+      G   GP PP P       P
Sbjct: 2565 DRSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAP 2624

Query: 125  PVQPEAMDKSGYGPPPPPPLLAPAPDPWPNAVADTPKIVSL 165
               P     S     P P      P P        P  VS 
Sbjct: 2625 D--PPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSR 2663

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 41.5 bits (97), Expect = 0.001
 Identities = 27/124 (21%), Positives = 34/124 (27%), Gaps = 21/124 (16%)

Query: 58   QESQQSAPKHGYVDRPPPPPAPIVAPPRPHPNGRHPSHGKPQFNHKLGGVYHGPPP--PP 115
              ++Q++P       PP  PA    P  P    R P+   P           GPP     
Sbjct: 2726 AAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTR 2785

Query: 116  PPLS-------------------AAKPPPVQPEAMDKSGYGPPPPPPLLAPAPDPWPNAV 156
            P ++                   AA   P        S  GP PPP    P   P P   
Sbjct: 2786 PAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGP 2845

Query: 157  ADTP 160
                
Sbjct: 2846 PPPS 2849

Length = 3151

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.7 bits (98), Expect = 0.001
 Identities = 25/110 (22%), Positives = 30/110 (27%), Gaps = 19/110 (17%)

Query: 63  SAPKHGYVDRPPPPPAPIVAPPRPHPNGRHPSHGKPQFNHKLGGVYHGPPPPPPPLSAAK 122
             P      RP    A  + P  P      P    P+           PP P  P SA K
Sbjct: 379 VRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPV--------APPVPHTPESAPK 430

Query: 123 PPPVQPEAMDKSGYGPPPPPP-----------LLAPAPDPWPNAVADTPK 161
                    +K  Y PP PP            +L      W   + D P 
Sbjct: 431 LTRAAIPVDEKPKYTPPAPPKEEEKALIADGDVLEQLEAIWKQILRDVPP 480

Length = 585

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 41.9 bits (99), Expect = 0.001
 Identities = 24/118 (20%), Positives = 32/118 (27%), Gaps = 5/118 (4%)

Query: 43  DAESTDQVASETSSDQESQQSAPKHGYVDRPPPPPAPIVAPPRPHPNGRHPSHGKPQFNH 102
                    S  ++   +  +         P    AP      P P         P    
Sbjct: 391 AGAPAAAAPSAAAAAPAAAPAPAA----AAPAAAAAP-APAAAPQPAPAPAPAPAPPSPA 445

Query: 103 KLGGVYHGPPPPPPPLSAAKPPPVQPEAMDKSGYGPPPPPPLLAPAPDPWPNAVADTP 160
                   P PPP    +A+P P    A + +    P PP   APA  P   A    P
Sbjct: 446 GNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAP 503

Length = 824

>gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein

 Score = 41.3 bits (97), Expect = 0.001
 Identities = 24/83 (28%), Positives = 26/83 (31%), Gaps = 10/83 (12%)

Query: 73  PPPPPAPIVAPPRPHPNGRHPSHGKPQFNHKLGGVYHGPPPPPPPLSAAKPPPVQPEAMD 132
            P  P    A  R     R             GG   G  PPPP L AA  P     ++ 
Sbjct: 681 DPVRPTAHHAALRAPQAPRPGGPPG-------GG---GGLPPPPDLPAAAGPAPCGSSLI 730

Query: 133 KSGYGPPPPPPLLAPAPDPWPNA 155
            S   PP P P  A   D   N 
Sbjct: 731 ASPTAPPEPEPPGAEQADGAENQ 753

Length = 753

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 41.3 bits (97), Expect = 0.002
 Identities = 24/80 (30%), Positives = 29/80 (36%), Gaps = 9/80 (11%)

Query: 73  PPPPPAPIVAPPRPHPNGRHPSHGKPQFNHKLGGVYHGPPPPP-----PPLSAAKPPPVQ 127
           P P  AP   P  P    + P   +PQF      +   PP PP     PP   A+PPP  
Sbjct: 221 PAPSQAPAQPPLPPQLPQQPPPLQQPQFPGLSQQMPPPPPQPPQQQQQPPQPQAQPPPQN 280

Query: 128 PEAMD----KSGYGPPPPPP 143
                    +    P PPP 
Sbjct: 281 QPTPHPGLPQGQNAPLPPPQ 300

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.9 bits (96), Expect = 0.002
 Identities = 24/128 (18%), Positives = 30/128 (23%), Gaps = 20/128 (15%)

Query: 33  EQPKQAQNREDAESTDQVASETSSDQESQQSAPKHGYVDRPPPPPAPIVAPPRPHPNGRH 92
           E    A       +     +   +   S  +AP        PP P    A   P      
Sbjct: 385 EAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAP----PAAAPPAPVAAPAAAAPAAAPAA 440

Query: 93  PSHGKPQFNHKLGGVYHGPPPPPPPLSAAKPPPVQPEAMDKSGYGPPPPPPLLAPAPDPW 152
                             PP    P + A P  V PE        P       APA  P 
Sbjct: 441 APAAVALAPA--------PPAQAAPETVAIPVRVAPE--------PAVASAAPAPAAAPA 484

Query: 153 PNAVADTP 160
              +  T 
Sbjct: 485 AARLTPTE 492

Length = 618

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 41.3 bits (97), Expect = 0.002
 Identities = 29/165 (17%), Positives = 34/165 (20%), Gaps = 38/165 (23%)

Query: 20  AEKTEVPNVSKVEEQPKQ--AQNREDAESTDQVASETSSDQESQQSAPKHGYVDRPPPPP 77
            E    P      E P          + ST   AS       +            PPPP 
Sbjct: 65  FEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSS----PDPPPPT 120

Query: 78  APIVAPPRPHPNGRHPSHGKPQFNHKLGGVYHGPPPPPP--------------------- 116
            P  +PP              +     G      PP                        
Sbjct: 121 PPPASPPPSPAPDLSE---MLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLS 177

Query: 117 --------PLSAAKPPPVQPEAMDKSGYGPPPPPPLLAPAPDPWP 153
                   P S    PP        S   P    P+ A A  P P
Sbjct: 178 SPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAP 222

Length = 1352

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.9 bits (96), Expect = 0.002
 Identities = 20/91 (21%), Positives = 22/91 (24%), Gaps = 10/91 (10%)

Query: 75  PPPAPIVAPPRPHPNGRHPSHGKPQFNHKLGGVYHGPPPPPPPLSAAKPPPVQPEAMDKS 134
           P PAP   P         P     +           PPP PP   A   P     A   +
Sbjct: 381 PTPAPSTRPKAAAAANIPPKEPVRETAT--------PPPVPPRPVAPPVPHTPESAPKLT 432

Query: 135 GYGPPPP--PPLLAPAPDPWPNAVADTPKIV 163
               P    P    PAP             V
Sbjct: 433 RAAIPVDEKPKYTPPAPPKEEEKALIADGDV 463

Length = 585

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 41.1 bits (97), Expect = 0.002
 Identities = 21/116 (18%), Positives = 31/116 (26%), Gaps = 4/116 (3%)

Query: 44  AESTDQVASETSSDQESQQSAPKHGYVDRPPPPPAPIVAP--PRPHPNGRHPSHGKPQFN 101
           +   ++ A   +    +  +AP        P   +   AP    P  + +H +       
Sbjct: 606 SGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDG 665

Query: 102 HKLGGVYHGPPPP--PPPLSAAKPPPVQPEAMDKSGYGPPPPPPLLAPAPDPWPNA 155
                   G   P  PPP  A   P     A        P   P    A DP    
Sbjct: 666 GDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQP 721

Length = 824

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.0 bits (96), Expect = 0.002
 Identities = 22/88 (25%), Positives = 24/88 (27%), Gaps = 4/88 (4%)

Query: 73  PPPPPAPIVAPPRPHPNGRHPSHGKPQFNHKLGGVYHGPPPPPPPLSAAKPPPVQPEAMD 132
             P  A         P  R P+        +      G  P P P  AA P      A  
Sbjct: 408 AAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAA 467

Query: 133 KSGYGPPPPPPLLAPAPDPWPNAVADTP 160
               GP P     A AP     A A  P
Sbjct: 468 ----GPRPVAAAAAAAPARAAPAAAPAP 491

Length = 700

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 40.3 bits (94), Expect = 0.003
 Identities = 33/135 (24%), Positives = 37/135 (27%), Gaps = 19/135 (14%)

Query: 44   AESTDQVASETSSDQESQQSAPKHGYVDRPPPPPAPIVAPPRP-----HPNG----RHPS 94
            A      A+   +   +    P        PPPP     P  P      P G    R PS
Sbjct: 2809 AAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPS 2868

Query: 95   HGKPQF----NHKLGGVYHGPPPPPPPLSAAKPP-----PVQPEAMDKSGYGPPPPPPLL 145
                                P       S A PP     P QP+A       P PPPP  
Sbjct: 2869 RSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQ 2928

Query: 146  APAPDPWPNAVADTP 160
             P P P P      P
Sbjct: 2929 -PQPPPPPPPRPQPP 2942

Length = 3151

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 40.4 bits (95), Expect = 0.003
 Identities = 24/105 (22%), Positives = 31/105 (29%), Gaps = 6/105 (5%)

Query: 58  QESQQSAPKHGYVDRPPPPPAPIVAPPRPHPNGRHPSHGKPQFNHKLGGVYHGPPPPPPP 117
             +  S+       RP  P AP  AP  P P G   +  +       G       P    
Sbjct: 600 PPAPASSGPPEEAARPAAPAAP-AAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVA 658

Query: 118 LSAA--KPPPVQPEAMDKSGYGPPPPPPLLAPAPDPWPNAVADTP 160
           +  A         +A   +   PPP P   APA    P   A   
Sbjct: 659 VPDASDGGDGWPAKAGGAAPAAPPPAP---APAAPAAPAGAAPAQ 700

Length = 824

>gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein

 Score = 40.6 bits (95), Expect = 0.003
 Identities = 26/98 (26%), Positives = 31/98 (31%), Gaps = 13/98 (13%)

Query: 76  PPAPIVAPPRP--HPNGRHPSHGKPQFNHKLGG--------VYHGPPPPPPPLSAAKPPP 125
           PP    A PRP  +  G     G P                V  G P  P    AA   P
Sbjct: 636 PPVFKTALPRPDYNRGGEAGGPGVPGPVPVGMPAHTARPSRVARGDPVRPTAHHAALRAP 695

Query: 126 VQPE---AMDKSGYGPPPPPPLLAPAPDPWPNAVADTP 160
             P         G  PPPP    A  P P  +++  +P
Sbjct: 696 QAPRPGGPPGGGGGLPPPPDLPAAAGPAPCGSSLIASP 733

Length = 753

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 40.6 bits (96), Expect = 0.003
 Identities = 28/140 (20%), Positives = 34/140 (24%), Gaps = 25/140 (17%)

Query: 26  PNVSKVEEQPKQAQNREDAESTDQVASETSSDQESQQSAPKHGYVDRPPPPPAPIVAPPR 85
            N   VEE  +Q     D  S D    E  +D               P    AP  A   
Sbjct: 6   QNEWLVEEMYQQYL--ADPNSVDPSWREFFADY-------------GPGSTAAPTAAAAA 50

Query: 86  PHPNGRHPSHGKPQFNHKLGGVYHGPPPPPPPLSAAKPPPVQPEAMDKSGYGPPPPPPLL 145
                  P+                 P  P P   A   P  P     +      P    
Sbjct: 51  AAAAASAPAAAPAA----------KAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPP 100

Query: 146 APAPDPWPNAVADTPKIVSL 165
           A A    P A A   ++  L
Sbjct: 101 AAAAAAAPAAAAVEDEVTPL 120

Length = 1228

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.1 bits (94), Expect = 0.003
 Identities = 18/86 (20%), Positives = 19/86 (22%), Gaps = 10/86 (11%)

Query: 72  RPPPPPAPIVAPPRPHPNGRHPSHGKPQFNHKLGGVYHGPPPPPPPLSAAKPPPVQPEAM 131
             P PP+     P P      P    P              P P P   A   P    A 
Sbjct: 380 GAPAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPAPAPPAAAAPPARSAD 439

Query: 132 DKSGYGPPPPPPLLAPAPDPWPNAVA 157
                           A D W   VA
Sbjct: 440 P----AAAA------SAGDRWRAFVA 455

Length = 576

>gnl|CDD|218146 pfam04554, Extensin_2, Extensin-like region

 Score = 35.9 bits (83), Expect = 0.003
 Identities = 23/83 (27%), Positives = 28/83 (33%), Gaps = 27/83 (32%)

Query: 69  YVDRPPPPPAPIVAPPRPHPNGRHPSHGKPQFNHKLGGVYHGPPPPPPPLSAAKPPPVQP 128
           Y  + PPPP    +PP P+                    Y  PPPP        PPP   
Sbjct: 1   YHYKSPPPPVKQYSPPPPY-------------------YYKSPPPPVKSPVYKSPPP--- 38

Query: 129 EAMDKSGYGPPPPPPLLAPAPDP 151
                  Y  PPPP  +  +P P
Sbjct: 39  -----PVYKSPPPPKYVYKSPPP 56

Length = 57

>gnl|CDD|220708 pfam10349, WWbp, WW-domain ligand protein

 Score = 37.4 bits (87), Expect = 0.003
 Identities = 22/86 (25%), Positives = 25/86 (29%), Gaps = 21/86 (24%)

Query: 58  QESQQSAPKHGYVDRPPPPPAPIVAPPRPHPNGRHPSHGKPQFNHKLGGVYHGPPPPPPP 117
           +ES    P   YV   P P     A P P+                       P  P PP
Sbjct: 42  RESGYYPPPGAYVHLEPLPAYGQYAAPPPYG-------------------PPPPYYPAPP 82

Query: 118 LSAAKPPPVQPEAMDKSGYGPPPPPP 143
                PPP     M  +    PPPP 
Sbjct: 83  GVYPTPPPPNSGYM--ADPQEPPPPY 106

The WWbp domain is characterized by several short PY and PT-like motifs of the PPPPY form. These appear to bind directly to the WW domains of WWP1 and WWP2 and other such diverse proteins as dystrophin and YAP (Yes-associated protein). This is the WW-domain binding protein WWbp via PY and PY_like motifs. The presence of a phosphotyrosine residue in the pWBP-1 peptide abolishes WW domain binding which suggests a potential regulatory role for tyrosine phosphorylation in modulating WW domain-ligand interactions. Given the likelihood that WWP1 and WWP2 function as E3 ubiquitin-protein ligases, it is possible that initial substrate-specific recognition occurs via WW domain-substrate protein interaction followed by ubiquitin transfer and subsequent proteolysis. This domain lies just downstream of the GRAM (pfam02893) in many members. Length = 111

>gnl|CDD|220603 pfam10152, DUF2360, Predicted coiled-coil domain-containing protein (DUF2360)

 Score = 38.1 bits (89), Expect = 0.003
 Identities = 23/74 (31%), Positives = 28/74 (37%), Gaps = 15/74 (20%)

Query: 110 GPPPPPPPLSAAKPPPVQPEAMDKSGYGPPPPPPLLAPAPDPWPNAVADTP------KIV 163
           GPPPPPP  + A  PP              PP      AP      VA  P      K++
Sbjct: 70  GPPPPPPARAEAASPPPP-------EAPAEPPAEPEPEAPAENTVTVAKDPRYAKYFKML 122

Query: 164 SLDVKCE--KNSMK 175
            L V  +  KN M+
Sbjct: 123 KLGVPAQAVKNKMQ 136

This is the conserved 140 amino acid region of a family of proteins conserved from nematodes to humans. One C. elegans member is annotated as a Daf-16-dependent longevity protein 1 but this could not be confirmed. The function is unknown. Length = 147

>gnl|CDD|217469 pfam03276, Gag_spuma, Spumavirus gag protein

 Score = 39.9 bits (93), Expect = 0.003
 Identities = 24/88 (27%), Positives = 29/88 (32%), Gaps = 10/88 (11%)

Query: 73  PPPPPAPIVAPPRPHPNGRHPSHGKPQFNHKLGGVYHGPPPPPPPLSAAKPPPVQPEAMD 132
           PPPP +    PP        PS      N      ++   P P P   + PP   P    
Sbjct: 188 PPPPSSLPGLPPGSSS--LAPSASSTPGNRLPRVSFNPFLPGPSPAQPSAPPASIP---- 241

Query: 133 KSGYGPPPPPPLLAPAPDPWPNAVADTP 160
                PP PP +   AP P P      P
Sbjct: 242 ----APPIPPVIQYVAPPPVPPPQPIIP 265

Length = 582

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 40.3 bits (94), Expect = 0.004
 Identities = 28/122 (22%), Positives = 37/122 (30%), Gaps = 18/122 (14%)

Query: 35  PKQAQNREDAESTDQVASETSSDQESQQSAPKHGYVDRPPPPPAPIVAPPRPHPNGRHPS 94
               + R    +    A     D +++ +AP    V  P P P P  APP P        
Sbjct: 380 LPTRKRRSARHAATPFARGPGGDDQTRPAAPVPASVPTPAPTPVPASAPPPPATPLPSAE 439

Query: 95  HGKPQFNHKLGGVYHGPPPPPP--------PLSAAKPPPVQPEAMDKSGYGPPPPPPLLA 146
            G             GP PPP           +   P     +A+D      PP PP   
Sbjct: 440 PGSDD----------GPAPPPERQPPAPATEPAPDDPDDATRKALDALRERRPPEPPGAD 489

Query: 147 PA 148
            A
Sbjct: 490 LA 491

Length = 3151

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 40.0 bits (94), Expect = 0.004
 Identities = 24/129 (18%), Positives = 38/129 (29%), Gaps = 4/129 (3%)

Query: 35  PKQAQNREDAESTDQVASETSSDQESQQSAPKHGYVDRPPPPPAPIVAPPRPHPNGRHPS 94
               ++    +++D      +    +  +AP        P  PA   AP +P P      
Sbjct: 651 EHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAG-AAPAQPAPAPAATP 709

Query: 95  HGKPQFNHKLGGVYHGPPPPPPPLSAAKPPPVQPEAMDK---SGYGPPPPPPLLAPAPDP 151
                 +              P  +A  P P+ PE  D    +G    PPPP        
Sbjct: 710 PAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAA 769

Query: 152 WPNAVADTP 160
              A   +P
Sbjct: 770 PAAAPPPSP 778

Length = 824

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 40.1 bits (93), Expect = 0.004
 Identities = 27/103 (26%), Positives = 39/103 (37%), Gaps = 10/103 (9%)

Query: 60  SQQSAPKHGYVDRPPPPPAPIVAPPRPHPNGRHPSHGKPQFNHKLGGVYHGPPPPPPPLS 119
            Q    +H +     P   P  + P   P     +    Q          G   P PPL 
Sbjct: 448 PQSPFAQHPFTSGGLPAIGPPPSLPTSTPAAPPRASSGSQPPGSALPSSGGCAGPGPPL- 506

Query: 120 AAKPPPVQ--PEAMDKSGYGPPPPPPLLAPAPDPWPNAVADTP 160
               PP+Q   E +D++     PPPP  +P+P+P    V +TP
Sbjct: 507 ----PPIQIKEEPLDEAEEPESPPPPPRSPSPEP---TVVNTP 542

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional

 Score = 39.7 bits (92), Expect = 0.004
 Identities = 25/95 (26%), Positives = 26/95 (27%), Gaps = 7/95 (7%)

Query: 72  RPPPPPAPIVA--PPRPHPNGRHPSHGKPQFNHKLGGVYHGPPPPPPPLSAAKPPPVQPE 129
              PP AP      P        P    P              PP      A+PP   P 
Sbjct: 703 PMRPPAAPPGRAQRPAAATGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPG 762

Query: 130 AMDKSGYGP----PPPPPLLAPAPDPWPNAVADTP 160
                   P    P PPP   PAP   P   A TP
Sbjct: 763 RARPPAAAPGAPTPQPPPQAPPAPQQRPRG-APTP 796

Length = 991

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	593
smart00241	253	ZP Zona pellucida (ZP) domain. ZP proteins are res	100.0
PF00100	265	Zona_pellucida: Zona pellucida-like domain; InterP	99.97
KOG1924|consensus	1102		98.82
KOG1924|consensus	1102		98.28
KOG3671|consensus	569		91.78
KOG3671|consensus	569		90.2
KOG1830|consensus	518		81.97

>smart00241 ZP Zona pellucida (ZP) domain

Probab=100.00  E-value=3.7e-36  Score=303.77  Aligned_cols=235  Identities=22%  Similarity=0.405  Sum_probs=186.0

Q ss_pred             EecCCeEEEEEEeCCCccceeeecCCCC-CCCceeccCCCCceEEEEEEeeccCCCCCccCCCccccccCCCCceEEEEE
Q psy8304         168 KCEKNSMKVFISFDKPFFGIVFSKGHYS-NVNCVHLPAGLGRTSANFEIGIHACGTSGNTENGLYGYGADAGSGTYFENI  246 (593)
Q Consensus       168 ~C~~d~M~V~V~~~~pF~G~Iyskg~~~-dp~C~~v~~g~g~t~~~F~I~l~~CGt~~~~~~~~~~y~~~n~~g~~ysNt  246 (593)
                      +|.++.|+|.|+++.+|.|.||+++.+. |+.|+......+.+++.|++++++||++++.          ++++++|+|+
T Consensus         1 ~C~~~~m~v~v~~~~~~~g~i~~~~l~l~d~~C~~~~~~~~~~~~~f~~~l~~CGt~~~~----------~~~~~~ysn~   70 (253)
T smart00241        1 QCGEDQMVVSVSTDLLFPGGIYVKGLYLGDPSCRPVFTDSTSAFVSFEVPLNGCGTRRQV----------NPDGIVYSNT   70 (253)
T ss_pred             CCCCCEEEEEEEecCCCCCeEEEeeEEeCCCCCCCccccCCCcEEEEEeccccCCCeEEE----------CCCeEEEEEE
Confidence            5999999999999999999999998765 8999995334567899999999999999853          3568899999


Q ss_pred             EEEe-eCCcceeeecc-eEEEEeeecCCccceeeeccccccccceeee-eccCCCceEEEEEEeCCCCCcccccc--eee
Q psy8304         247 IVIQ-YDPQVQEVWDQ-ARKLRCTWHDQYEKSVTFRPFPVDMLDVVRA-DFAGDNVGCWMQIQVGKGPWASEVSG--LVK  321 (593)
Q Consensus       247 VVVQ-~hp~I~T~~D~-~~~V~C~y~~~~eksVt~~p~~V~m~~v~~~-~fsg~~p~~~M~I~~g~GP~~~~Vs~--~V~  321 (593)
                      |+++ .|+.++|..|+ .++|+|.|.... + ++. .+.+.......+ ....+.+.|+|+|+.++ .|+.++..  .++
T Consensus        71 v~~~~~~~~~itr~~~~~~~~~C~y~~~~-~-~~~-~~~~~~~~~~~~~~~~~g~~~~~m~l~~~~-~~~~~~~~~~~~~  146 (253)
T smart00241       71 LVVSPFHPGFITRDDRAAYHFQCFYPENE-K-VSL-NLDVSTIPPTELSSVSEGPPTCSYRLYKDD-SFGSPYQSADYPV  146 (253)
T ss_pred             EEEccCCCCceEecCceEEEEEEEEeCCC-c-eEE-EEEecCCCCCCcccccCCCcEEEEEeccCC-CCCCcccCCCCcc
Confidence            9999 79999999988 899999999853 3 322 123322111111 11235679999999875 57776633  238


Q ss_pred             cCCEEEEEEEEecC-CCcceEEEeEEEEecCC----CCcEEeeccCCcccccccccceeeeccCCCccceeEEEEEEeeE
Q psy8304         322 IGQTMTMVLAIKDD-DSKFDMLVRNCMAHDGK----RAPIQLVDQRGCVTRSKLMSRFTKIKNFGASASVLSYAHFQAFK  396 (593)
Q Consensus       322 IGd~L~l~v~i~~~-~~~~~l~V~sC~Atdg~----g~~~~LIDenGCp~D~~L~~~f~~~~d~g~s~slla~a~f~AFK  396 (593)
                      |||+|+++|++... ++.|+|+|++|||+|+.    +.++.||| +||++|+.++....+..+.    +..++|.|+|||
T Consensus       147 lg~~l~~~~~~~~~~~~~~~l~v~~C~at~~~~~~~~~~~~lI~-~GC~~d~~~~~~~~~~~~~----~~~~~f~~~aF~  221 (253)
T smart00241      147 LGDPVYHEWSCDGADDPPLGLLVDNCYATPGSDPSSGPKYFIID-NGCPVDGYLDSTIPYNSSP----NHYARFSVKVFK  221 (253)
T ss_pred             cCCeEEEEEEEccCCCCCeEEEEeeEEEcCCCCCCCCCcEEEEE-CccCCCCccccceecCCCC----cceEEEEEEEEE
Confidence            99999999999875 68999999999999987    36899999 9999998877766665541    224699999999


Q ss_pred             eCCCCeEEEEEEEEEccCCCCCcCC
Q psy8304         397 FPDSMEVHFQCTIQICRYQCPDQCS  421 (593)
Q Consensus       397 Fpds~~Vyf~C~V~vC~~~CP~~C~  421 (593)
                      |+++..|||||+|++|....+..|.
T Consensus       222 F~~~~~v~~hC~v~vC~~~~~~~C~  246 (253)
T smart00241      222 FADRSLVYFHCQIRLCDKSDGSSCD  246 (253)
T ss_pred             ecCCCcEEEEEEEEEECCCCCCCCC
Confidence            9999999999999999985433444

ZP proteins are responsible for sperm-adhesion fo the zona pellucida. ZP domains are also present in multidomain transmembrane proteins such as glycoprotein GP2, uromodulin and TGF-beta receptor type III (betaglycan).

>PF00100 Zona_pellucida: Zona pellucida-like domain; InterPro: IPR001507 A large domain, containing around 260 amino acids, has been recognised in a variety of receptor-like eukaryotic glycoproteins []

Probab=99.97  E-value=1.3e-29  Score=252.82  Aligned_cols=234  Identities=24%  Similarity=0.425  Sum_probs=156.7

Q ss_pred             EecCCeEEEEEEeCCCccceeee-cCCCCCCCceeccCCCCceEEEEEEeecc--CCCCCccCCCccccccCCCCceEEE
Q psy8304         168 KCEKNSMKVFISFDKPFFGIVFS-KGHYSNVNCVHLPAGLGRTSANFEIGIHA--CGTSGNTENGLYGYGADAGSGTYFE  244 (593)
Q Consensus       168 ~C~~d~M~V~V~~~~pF~G~Iys-kg~~~dp~C~~v~~g~g~t~~~F~I~l~~--CGt~~~~~~~~~~y~~~n~~g~~ys  244 (593)
                      +|..+.|+|.|+++.+|.|.||. ++++.++.|++.. ..+.+++.|++++..  ||+......         +.++.|+
T Consensus         1 ~C~~~~~~v~i~~~~~~~~~i~~~~~~~~~~~C~~~~-~~~~~~~~~~~~~~~~~Cg~~~~~~~---------~~~~~y~   70 (265)
T PF00100_consen    1 TCGSDSMTVTIKKDYLFTGNIYVSDLHLNDPSCRARS-DTNSTHITFSIPFNSPSCGTTRSIEN---------GDSIVYS   70 (265)
T ss_dssp             EE-SSEEEEEEESSTTSSS-B-GGGEEETTTTB--EE-ECTTTEEEEEEECCC--CTSEEEE-----------SSEEEEE
T ss_pred             CcCCCEEEEEEEeccccCCCEEeeeeEECCCCCCCcc-cCCCcEEEEEEecCCCCCcccccccc---------cCcceee
Confidence            69999999999999999998877 6777889999921 245678999999999  999976431         2347899


Q ss_pred             EEEEEeeCC--------cceeeecceEEEEeee-cCCccceeeeccccccccceeeeeccCCCceEEEEEEeCCCCCcc-
Q psy8304         245 NIIVIQYDP--------QVQEVWDQARKLRCTW-HDQYEKSVTFRPFPVDMLDVVRADFAGDNVGCWMQIQVGKGPWAS-  314 (593)
Q Consensus       245 NtVVVQ~hp--------~I~T~~D~~~~V~C~y-~~~~eksVt~~p~~V~m~~v~~~~fsg~~p~~~M~I~~g~GP~~~-  314 (593)
                      |+|+++.+.        .|++..|..++|+|.| ...  .+++......................++|+++.++ .+.. 
T Consensus        71 n~i~~~~~~~~~~~~~~~i~~~~~~~~~~~C~y~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~l~~~~-~~~~~  147 (265)
T PF00100_consen   71 NTIVSSQDVSFNDSPGGNITRDSDRRFNFTCTYSSSQ--YSVSSGSPNISSVTIHISQESSGSFSFSMRLYKDD-SFSSP  147 (265)
T ss_dssp             EEEEEE--SSSS---STTECSSS-EEEEEEEEE-EC--------------B-TTT---STT--EEEEEEEESTT-TSSCB
T ss_pred             eeeeeeccccccccccCceEEecccccccEEEECCcc--ceeccccccceeccccceeccCCccceEEEeccCc-ccccc
Confidence            999987653        4566789999999999 432  23322111111111111111234467899999864 3432 


Q ss_pred             --cccceeecCCEEEEEEEEecCC-CcceEEEeEEEEecC----CCCcEEeeccCCcccccccccceeeeccCCCcccee
Q psy8304         315 --EVSGLVKIGQTMTMVLAIKDDD-SKFDMLVRNCMAHDG----KRAPIQLVDQRGCVTRSKLMSRFTKIKNFGASASVL  387 (593)
Q Consensus       315 --~Vs~~V~IGd~L~l~v~i~~~~-~~~~l~V~sC~Atdg----~g~~~~LIDenGCp~D~~L~~~f~~~~d~g~s~sll  387 (593)
                        .-...+.+||.|+++|+++... ..+.|+|++|||+++    .+..+.|||++||++|...+..+.+....+.+ . .
T Consensus       148 ~~~~~~~~~vg~~v~~~v~~~~~~~~~~~~~v~~C~a~~~~~~~~~~~~~lId~~GC~~~~~~~~~~~~~~~~~~~-~-~  225 (265)
T PF00100_consen  148 YSQPPATVEVGDRVYVEVSVSPDSSDPLGLFVDSCWATPSSDPDSSPSYTLIDENGCPVDSDDFVTFEYSGPNGDS-S-R  225 (265)
T ss_dssp             ---SSEEE-TT-EEEEEEEEEECCC-TEEEEEEEEEEESSSSTTSSSCEEEEBCTTEEGGGCTTTEEEEETTTCCC-C-E
T ss_pred             ccCCceeEEeeeeEEEEEEeccccceeeEEEeCEEEEeCCCCcccccccceeccccccccccceeEEEeccccccc-c-E
Confidence              1123689999999999986543 128899999999999    34689999999999999888777765111221 2 4


Q ss_pred             EEEEEEeeEeCCCCeEEEEEEEEEccCCC
Q psy8304         388 SYAHFQAFKFPDSMEVHFQCTIQICRYQC  416 (593)
Q Consensus       388 a~a~f~AFKFpds~~Vyf~C~V~vC~~~C  416 (593)
                      ++|+|+||||+++..|||||+|++|...|
T Consensus       226 ~~f~f~aF~f~~~~~v~i~C~v~~C~~~~  254 (265)
T PF00100_consen  226 ARFSFRAFRFPDSSSVYIHCSVRVCDKSD  254 (265)
T ss_dssp             EEEEEE-EEETSSSEEEEEEEEEEEETTS
T ss_pred             EEEEeeEEEecCCCeEEEEEEEEEECCCC
Confidence            68999999999999999999999999875

All of these proteins are mosaic proteins composed of various domains and that all have a large extracellular region followed by either a transmembrane region and a very short cytoplasmic region or by a GPI-anchor. The domain common to all these proteins is located in the C-terminal portion of the extracellular region, and contains 8 conserved Cys residues, which are probably involved in disulphide bond formation. This entry includes a domain found in the zona pellucida proteins. The zona pellucida is a specialised extracellular matrix of mammailian eggs, which plays a crucial role in fertilisation by directly mediating species-restricted recongition between gametes. In mammals, up to four zona pellucida subnits are known, named ZP1-4. The full-length crystal structure of murine ZP3 has been solved []. This entry is also found in other glycoproteins, such as CD105 (also called endoglin) which is the regulatory component of the TGF-beta receptor complex. It is a modulator of cellular responses to TGF-beta 1. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; PDB: 3D4G_G 3EF7_A 3D4C_A 3NK4_B 3NK3_B 3QW9_A.

>KOG1924|consensus

Probab=98.82  E-value=8.3e-09  Score=115.91  Aligned_cols=22  Identities=55%  Similarity=1.242  Sum_probs=13.0

Q ss_pred             CCCCCCCCCCCCCCCCCCCCcc
Q psy8304         108 YHGPPPPPPPLSAAKPPPVQPE  129 (593)
Q Consensus       108 ~~~p~~~~~~~~~~~~~~~~~~  129 (593)
                      ..|||||||||.-.++||||++
T Consensus       567 aG~PPpPppppg~~gppPPPpp  588 (1102)
T KOG1924|consen  567 AGGPPPPPPPPGGGGPPPPPPP  588 (1102)
T ss_pred             cCCCCccCCCCCCCCCCCcCCC
Confidence            4456666666665666655555

>KOG1924|consensus

Probab=98.28  E-value=2.9e-06  Score=96.06  Aligned_cols=15  Identities=13%  Similarity=0.344  Sum_probs=7.1

Q ss_pred             ceeeecCCCCCCCceec
Q psy8304         186 GIVFSKGHYSNVNCVHL  202 (593)
Q Consensus       186 G~Iyskg~~~dp~C~~v  202 (593)
                      +.|-...-.  .+|.++
T Consensus       632 ~kI~p~d~s--~~cFWv  646 (1102)
T KOG1924|consen  632 SKIVPRDLS--ENCFWV  646 (1102)
T ss_pred             cccCccccC--ccceee
Confidence            444444333  347665

>KOG3671|consensus

Probab=91.78  E-value=0.62  Score=51.85  Aligned_cols=10  Identities=50%  Similarity=1.062  Sum_probs=4.6

Q ss_pred             CCCCCCcccc
Q psy8304         122 KPPPVQPEAM  131 (593)
Q Consensus       122 ~~~~~~~~~~  131 (593)
                      ++++++++-|
T Consensus       427 pPppPPPPPm  436 (569)
T KOG3671|consen  427 PPPPPPPPPM  436 (569)
T ss_pred             CCCCCcCCCC
Confidence            3444444455

>KOG3671|consensus

Probab=90.20  E-value=0.76  Score=51.20  Aligned_cols=10  Identities=30%  Similarity=0.587  Sum_probs=4.2

Q ss_pred             CCCCCCCCCC
Q psy8304          68 GYVDRPPPPP   77 (593)
Q Consensus        68 ~~~~~~~~~~   77 (593)
                      +-.+|||+++
T Consensus       373 ar~PPPpp~s  382 (569)
T KOG3671|consen  373 ARPPPPPPRS  382 (569)
T ss_pred             CCCCcCCCCC
Confidence            3344444443

>KOG1830|consensus

Probab=81.97  E-value=13  Score=41.03  Aligned_cols=19  Identities=21%  Similarity=0.307  Sum_probs=8.0

Q ss_pred             ecccccccccccCCccccc
Q psy8304          15 TGSQFAEKTEVPNVSKVEE   33 (593)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~   33 (593)
                      +|..-|++-...++-.+++
T Consensus       286 ~g~g~a~~r~~~n~~rPt~  304 (518)
T KOG1830|consen  286 RGGGLASARPSSNVVRPTQ  304 (518)
T ss_pred             cCCcccCcCCCcCCCCCCC
Confidence            3444444444444444433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	593
3nk4_A	297	ZONA pellucida 3; fertilization, oocyte, egg coat,	2e-17
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	2e-05
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	3e-05
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	4e-05
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	1e-04
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	3e-04
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	9e-04
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	2e-05
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	9e-05
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	1e-04
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	2e-04
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	6e-04
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	9e-05
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	5e-04
1kxf_A	264	Sindbis virus capsid protein; chymotrypsin-like se	9e-04

>3nk4_A ZONA pellucida 3; fertilization, oocyte, egg coat, vitelline E ZP domain, ZP module, egg-sperm interaction, species-specif recognition, speciation; HET: A2G FLC; 2.00A {Gallus gallus} PDB: 3nk3_A* Length = 297

 Score = 82.3 bits (202), Expect = 2e-17
 Identities = 36/266 (13%), Positives = 82/266 (30%), Gaps = 22/266 (8%)

Query: 167 VKCEKNSMKVFISFDKPFFGIVFSKG--HYSNVNCVHLPAGLGRTSANFEIGIHACGTSG 224
           V+C++  + V +  D    G + +          C H        +  F  G+H CG+  
Sbjct: 6   VQCQEAQLVVTVHRDLFGTGRLINAADLTLGPAACKHSSLNAAHNTVTFAAGLHECGSVV 65

Query: 225 NTENGLYGYGADAGSGTYFENIIVIQYDPQVQEVWDQARKLRCTWHDQYEKSVTFRPFPV 284
                             +  +I     P    V  +           Y +        +
Sbjct: 66  QVT----------PDTLIYRTLINYDPSPASNPVIIRTNPAVIPIECHYPRREQVSSNAI 115

Query: 285 DMLDVVRADFAGDNVGCWMQIQVGKGPWASEV-SGLVKIGQTMTMVLAIK-DDDSKFDML 342
                               +++    W++E      ++G  + +   +  ++     + 
Sbjct: 116 RPTWSPFNSALSAEERLVFSLRLMSDDWSTERPFTGFQLGDILNIQAEVSTENHVPLRLF 175

Query: 343 VRNCMAH---DGKRAP-IQLVDQRGCVTRSKLMSRFTKIKNFGASASVLSYAHFQAFKFP 398
           V +C+A    DG  +P   ++D  GC+   ++    +          VL +     F+F 
Sbjct: 176 VDSCVAALSPDGDSSPHYAIIDFNGCLVDGRVDDTSSAFITPRPREDVLRF-RIDVFRFA 234

Query: 399 --DSMEVHFQCTIQICRY-QCPDQCS 421
             +   ++  C +++    Q PD  +
Sbjct: 235 GDNRNLIYITCHLKVTPADQGPDPQN 260

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 45.4 bits (107), Expect = 2e-05
 Identities = 17/86 (19%), Positives = 19/86 (22%), Gaps = 3/86 (3%)

Query: 61  QQSAPKHGYVDRPPPPPAPIVAPPRPHPNGRHPSHGKPQFNHKLGGVYHGPPPPPPPLSA 120
           Q   P+           A       P           P             PPP      
Sbjct: 140 QVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPM 199

Query: 121 AKPPPVQPEAMDKSGYGPP---PPPP 143
             P  + P      G  PP   PPPP
Sbjct: 200 GPPMGIPPGRGTPMGMPPPGMRPPPP 225

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 44.6 bits (105), Expect = 3e-05
 Identities = 19/85 (22%), Positives = 22/85 (25%), Gaps = 10/85 (11%)

Query: 72  RPPPPPAPIVAPPRPHPNGRHPSHGKPQFNHKLGGVYHGPPPPPPPLSAAKPPPVQPEAM 131
            P        A      +        P           G PPPP    A  P  + P   
Sbjct: 143 TPQGRGTVAAAAAAATASIAGAPTQYPPGR--------GGPPPPMGRGAPPPGMMGPPPG 194

Query: 132 DKSGYGPPP--PPPLLAPAPDPWPN 154
            +   GPP   PP    P   P P 
Sbjct: 195 MRPPMGPPMGIPPGRGTPMGMPPPG 219

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 44.3 bits (104), Expect = 4e-05
 Identities = 16/82 (19%), Positives = 22/82 (26%), Gaps = 1/82 (1%)

Query: 73  PPPPPAPIVAPPRPHPNGRHPSHGKPQFNHKLGGVYHGPPPPPPPLSAAKPPPVQPEAMD 132
           P P     +A P     G       PQ    +              +  + PP +     
Sbjct: 119 PMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAA-AAAATASIAGAPTQYPPGRGGPPP 177

Query: 133 KSGYGPPPPPPLLAPAPDPWPN 154
             G G PPP  +  P     P 
Sbjct: 178 PMGRGAPPPGMMGPPPGMRPPM 199

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 43.1 bits (101), Expect = 1e-04
 Identities = 18/75 (24%), Positives = 21/75 (28%)

Query: 73  PPPPPAPIVAPPRPHPNGRHPSHGKPQFNHKLGGVYHGPPPPPPPLSAAKPPPVQPEAMD 132
                A   A     P    P  G P      G    G   PPP +     PP+      
Sbjct: 150 VAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMGIPPGR 209

Query: 133 KSGYGPPPPPPLLAP 147
            +  G PPP     P
Sbjct: 210 GTPMGMPPPGMRPPP 224

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 41.6 bits (97), Expect = 3e-04
 Identities = 16/108 (14%), Positives = 22/108 (20%)

Query: 48  DQVASETSSDQESQQSAPKHGYVDRPPPPPAPIVAPPRPHPNGRHPSHGKPQFNHKLGGV 107
           + + S T      + +      +      P    A  R  P G             + GV
Sbjct: 75  ENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGV 134

Query: 108 YHGPPPPPPPLSAAKPPPVQPEAMDKSGYGPPPPPPLLAPAPDPWPNA 155
                    P            A       P   PP     P P    
Sbjct: 135 GGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRG 182

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 40.4 bits (94), Expect = 9e-04
 Identities = 14/78 (17%), Positives = 18/78 (23%)

Query: 72  RPPPPPAPIVAPPRPHPNGRHPSHGKPQFNHKLGGVYHGPPPPPPPLSAAKPPPVQPEAM 131
           R    P+  V  P+        +             Y      PPP      PP      
Sbjct: 132 RGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGP 191

Query: 132 DKSGYGPPPPPPLLAPAP 149
                 P  PP  + P  
Sbjct: 192 PPGMRPPMGPPMGIPPGR 209

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 46.4 bits (109), Expect = 2e-05
 Identities = 13/96 (13%), Positives = 23/96 (23%)

Query: 62  QSAPKHGYVDRPPPPPAPIVAPPRPHPNGRHPSHGKPQFNHKLGGVYHGPPPPPPPLSAA 121
           Q+  ++G    P   PA  + P  P   G             +  +       P      
Sbjct: 11  QAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLH 70

Query: 122 KPPPVQPEAMDKSGYGPPPPPPLLAPAPDPWPNAVA 157
           +       +M+       P     A      P  + 
Sbjct: 71  QQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMG 106

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 44.4 bits (104), Expect = 9e-05
 Identities = 15/101 (14%), Positives = 23/101 (22%), Gaps = 4/101 (3%)

Query: 60  SQQSAPKHGYVDRPPPPPAPIVAPPRPHPNGRHPSHGKPQFNHKLGGVYHGPPP----PP 115
           S            P       + P +   + +         +  L  V    P     P 
Sbjct: 41  SYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQ 100

Query: 116 PPLSAAKPPPVQPEAMDKSGYGPPPPPPLLAPAPDPWPNAV 156
            P+    P   Q + M    YG P         P      +
Sbjct: 101 VPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMRPMNQLYPI 141

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 44.0 bits (103), Expect = 1e-04
 Identities = 11/109 (10%), Positives = 22/109 (20%), Gaps = 2/109 (1%)

Query: 54  TSSDQESQQSAPKH--GYVDRPPPPPAPIVAPPRPHPNGRHPSHGKPQFNHKLGGVYHGP 111
            +  Q  Q + P         P  P A  ++  +     +       Q            
Sbjct: 11  QAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLH 70

Query: 112 PPPPPPLSAAKPPPVQPEAMDKSGYGPPPPPPLLAPAPDPWPNAVADTP 160
                  ++     +    +        P  P+    P          P
Sbjct: 71  QQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAP 119

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 43.7 bits (102), Expect = 2e-04
 Identities = 13/107 (12%), Positives = 24/107 (22%)

Query: 58  QESQQSAPKHGYVDRPPPPPAPIVAPPRPHPNGRHPSHGKPQFNHKLGGVYHGPPPPPPP 117
           Q+   +   +G +  PP    P +   +     +   H +           H    P   
Sbjct: 33  QDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVD 92

Query: 118 LSAAKPPPVQPEAMDKSGYGPPPPPPLLAPAPDPWPNAVADTPKIVS 164
            +A   P V  +          P        P             + 
Sbjct: 93  PNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMRPMNQLY 139

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 42.1 bits (98), Expect = 6e-04
 Identities = 15/109 (13%), Positives = 23/109 (21%), Gaps = 6/109 (5%)

Query: 49  QVASETSSDQESQQSAPKHGYVDRPPPPPAPIVAPPRPHPNGRHPSHGKPQFNHKLGGVY 108
           Q     +  Q+  Q  P               + P    P+        P     L    
Sbjct: 15  QYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQ-LHQQI 73

Query: 109 HGPPPPPPPLSAAKPPPVQPEAMDKSGYGPPPPPPLLAPAPDPWPNAVA 157
                    +     P V P     + Y  P  P  +          +A
Sbjct: 74  DQATTSMNDMHLHNVPLVDP-----NAYMQPQVPVQMGTPLQQQQQPMA 117

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 44.4 bits (104), Expect = 9e-05
 Identities = 21/106 (19%), Positives = 27/106 (25%), Gaps = 11/106 (10%)

Query: 63  SAPKHGYVDRPPPPPAPIVAPPRPHPNGRHPSHGKPQFNHKLGGVYHGPPPPPPPLSA-A 121
           S+  H +      P    +  P         +                P PPPPP  A  
Sbjct: 3   SSHHHHHHSSGLVPRGSHMVIPSASVT---SAASDFLAALHPPVTVPDPAPPPPPAPAAG 59

Query: 122 KPPPVQPEAMDK-------SGYGPPPPPPLLAPAPDPWPNAVADTP 160
            PP                +G G     P +     P P A A  P
Sbjct: 60  NPPDTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAP 105

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 41.8 bits (98), Expect = 5e-04
 Identities = 27/118 (22%), Positives = 35/118 (29%), Gaps = 17/118 (14%)

Query: 41  REDAESTDQVASETSSDQESQQSAPKHGYVDRPPPPPAPIVAPPRPHPNGRHPSHGKPQF 100
            +D E+ D   +ET         A       +     A  +          +P  G    
Sbjct: 339 FDDKETEDDKDAETEIPAGESSDAAPSADAAQMKEMMA--MMQKMQQQQAAYPPQG---- 392

Query: 101 NHKLGGVYHGPPPPPPPLSAAKPPPVQPEAMDKSGYGPPPP--PPLLAPAPDPWPNAV 156
                   + PPP   P     P    P+     GY PPP   PP  AP   P P  V
Sbjct: 393 --------YAPPPQGYPPQGYPPQGYPPQGYPPQGYPPPPQGAPPQGAPPAAP-PQGV 441

>1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine proteinase, wild type, viral protein; 2.38A {Sindbis virus} SCOP: b.47.1.3 PDB: 1ld4_A 3j0f_A Length = 264

 Score = 40.6 bits (94), Expect = 9e-04
 Identities = 15/90 (16%), Positives = 21/90 (23%), Gaps = 3/90 (3%)

Query: 64  APKHGYVDRPPPPPAPIVAPPRPHPNGRHPSHGKPQFNHKLGGVYHGPPPPPPPLSAAKP 123
           AP   +  R     AP+ A        +  +                P P PPP    + 
Sbjct: 16  APTAMWRPRRRRQAAPMPARNGLASQIQQLTTAVSALVIGQATRPQNPRPRPPPRQKKQA 75

Query: 124 PPVQPEAMDKSGYGPPPPPPLLAPAPDPWP 153
           P   P+        P            P  
Sbjct: 76  PKQPPKPKKPK---PQEKKKKQPAKTKPGK 102

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	593
3nk4_A	297	ZONA pellucida 3; fertilization, oocyte, egg coat,	99.95
3qw9_A	176	Transforming growth factor beta receptor type 3; c	99.63
2l2t_A	44	Receptor tyrosine-protein kinase ERBB-4; transmemb	86.26

>3nk4_A ZONA pellucida 3; fertilization, oocyte, egg coat, vitelline E ZP domain, ZP module, egg-sperm interaction, species-specif recognition, speciation; HET: A2G FLC; 2.00A {Gallus gallus} PDB: 3nk3_A*

Probab=99.95  E-value=1.3e-26  Score=239.28  Aligned_cols=239  Identities=13%  Similarity=0.296  Sum_probs=161.2

Q ss_pred             ceeEEecCCeEEEEEEeCCCccc--eeeecCCCCCCCceeccCCCCceEEEEEEeeccCCCCCccCCCccccccCCCCce
Q psy8304         164 SLDVKCEKNSMKVFISFDKPFFG--IVFSKGHYSNVNCVHLPAGLGRTSANFEIGIHACGTSGNTENGLYGYGADAGSGT  241 (593)
Q Consensus       164 ~v~V~C~~d~M~V~V~~~~pF~G--~Iyskg~~~dp~C~~v~~g~g~t~~~F~I~l~~CGt~~~~~~~~~~y~~~n~~g~  241 (593)
                      .+.|+|..+.|+|.|..+..-.|  .-....++.++.|+.+..+.+.+++.|.+++++|||+++.+          ++.+
T Consensus         3 ~V~V~C~~~~m~V~V~k~~l~~~~~i~~~~L~L~d~~C~~~~~~~~~~~~~f~~~l~~CGT~~~~~----------~~~i   72 (297)
T 3nk4_A            3 PVAVQCQEAQLVVTVHRDLFGTGRLINAADLTLGPAACKHSSLNAAHNTVTFAAGLHECGSVVQVT----------PDTL   72 (297)
T ss_dssp             SEEEEECSSEEEEEEESCCSCSSCCCCGGGEEETTTTBCCSEEETTTTEEEEEEETTCTTCEEEEC----------SSEE
T ss_pred             cEEEEeCCCEEEEEEEHHHhCCCCccccceeEECCCCCCCeeeCCCCcEEEEEecCCCCCceeEec----------CCEE
Confidence            57899999999999998532222  22234456688999975332357999999999999998643          3578


Q ss_pred             EEEEEEEEeeCC----cceeeecceEEEEeeecCCccceeeeccccccccceeeeecc-CCCceEEEEEEeCCCCCcccc
Q psy8304         242 YFENIIVIQYDP----QVQEVWDQARKLRCTWHDQYEKSVTFRPFPVDMLDVVRADFA-GDNVGCWMQIQVGKGPWASEV  316 (593)
Q Consensus       242 ~ysNtVVVQ~hp----~I~T~~D~~~~V~C~y~~~~eksVt~~p~~V~m~~v~~~~fs-g~~p~~~M~I~~g~GP~~~~V  316 (593)
                      .|+|+|+....+    .|++.....++|+|.|.+...  |+...+....... ..+.. .+.....|+|++++  |..+.
T Consensus        73 iY~N~l~~~~~~~~~~~ItR~~~~~l~~~C~Y~~~~~--vs~~~~~p~~~~~-~~~~~~~g~~~~~m~l~~d~--~~~~~  147 (297)
T 3nk4_A           73 IYRTLINYDPSPASNPVIIRTNPAVIPIECHYPRREQ--VSSNAIRPTWSPF-NSALSAEERLVFSLRLMSDD--WSTER  147 (297)
T ss_dssp             EEEEEEEECCCCCSSTTEESSCCEEEEEEEEEEC------------CCBCTT-C------CCCCEEEEEECTT--SSSBC
T ss_pred             EEEEEEEEeccCCCCCceEecccEEEEEEEEEcCCCc--cccccCcCccccc-ccccccccceEEEEEeccCC--Ccccc
Confidence            899999876432    245555667899999998643  3321111000000 01111 13457899999864  32221


Q ss_pred             -cceeecCCEEEEEEEEecC-CCcceEEEeEEEEecCCC----CcEEeeccCCccccccccc---ceeeeccCCCcccee
Q psy8304         317 -SGLVKIGQTMTMVLAIKDD-DSKFDMLVRNCMAHDGKR----APIQLVDQRGCVTRSKLMS---RFTKIKNFGASASVL  387 (593)
Q Consensus       317 -s~~V~IGd~L~l~v~i~~~-~~~~~l~V~sC~Atdg~g----~~~~LIDenGCp~D~~L~~---~f~~~~d~g~s~sll  387 (593)
                       ...+.+||+||+++++... +..+.++|++|||+++.+    ..|.||+.+||++|.++..   .|....  +.  +..
T Consensus       148 ~~~~~~l~~~lyvev~v~~~~~~~l~l~l~~C~ATps~~~~~~~~y~lI~~~GC~~d~~~~~~~s~~~~~~--~~--~~~  223 (297)
T 3nk4_A          148 PFTGFQLGDILNIQAEVSTENHVPLRLFVDSCVAALSPDGDSSPHYAIIDFNGCLVDGRVDDTSSAFITPR--PR--EDV  223 (297)
T ss_dssp             CSCCBCTTCEEEEEEEECCTTBCCEEEEEEEEEEESSSCTTSSSEEEEEBTTTEEGGGGSTTCCCEECSSC--SS--TTE
T ss_pred             cCCcccCCCEEEEEEEEecCCCCCEEEEEeeEEEeCCCCccCCceEEEEccCCCCcCCccccceeEEecCC--CC--Cce
Confidence             2357899999999999764 478999999999999753    4789996699999988752   232111  21  224


Q ss_pred             EEEEEEeeEeCC--CCeEEEEEEEEEccCCC-CCcCC
Q psy8304         388 SYAHFQAFKFPD--SMEVHFQCTIQICRYQC-PDQCS  421 (593)
Q Consensus       388 a~a~f~AFKFpd--s~~Vyf~C~V~vC~~~C-P~~C~  421 (593)
                      ++|.|+||||.+  ...|||||.|++|.... ...|.
T Consensus       224 ~rF~~~~F~F~~~~~~~vylhC~v~vC~~~~~~~~C~  260 (297)
T 3nk4_A          224 LRFRIDVFRFAGDNRNLIYITCHLKVTPADQGPDPQN  260 (297)
T ss_dssp             EEEEEECCEETTCSSCEEEEEEEEEEEETTCCCBTTB
T ss_pred             EEEEEEeEeccCCCCCeEEEEEEEEEECCCCCCCccc
Confidence            689999999997  68999999999998742 23453

>3qw9_A Transforming growth factor beta receptor type 3; cytokine receptor, immunoglobulin domain, ZONA pellucida, TG ligand CO-receptor; HET: NAG BMA FUC MAN; 2.00A {Rattus norvegicus}

Probab=99.63  E-value=3.6e-15  Score=143.32  Aligned_cols=113  Identities=10%  Similarity=0.173  Sum_probs=85.2

Q ss_pred             CceEEEEEEeCCCCCcccc--cceeecCCEEEEEEEEecCCCcceEEEeEEEEecCCC----CcEEeeccCCcccccccc
Q psy8304         298 NVGCWMQIQVGKGPWASEV--SGLVKIGQTMTMVLAIKDDDSKFDMLVRNCMAHDGKR----APIQLVDQRGCVTRSKLM  371 (593)
Q Consensus       298 ~p~~~M~I~~g~GP~~~~V--s~~V~IGd~L~l~v~i~~~~~~~~l~V~sC~Atdg~g----~~~~LIDenGCp~D~~L~  371 (593)
                      ++...|+||.+.. |..++  ...+.+||+||+++++...+..+.+++++|||+++.+    ..|.||+ |||+.|.++.
T Consensus         4 ~f~~~M~ly~d~~-f~~p~~~~~~v~l~~~lyvev~l~~~d~~l~l~ld~CwATps~d~~~~~~y~lI~-nGC~~D~t~~   81 (176)
T 3qw9_A            4 NATFNMELYNTDL-FLVPSPGVFSVAENEHVYVEVSVTKADQDLGFAIQTCFLSPYSNPDRMSDYTIIE-NICPKDDSVK   81 (176)
T ss_dssp             CEEEEEEEESSTT-CCSBCCSSEEECTTCEEEEEEEEEESCTTEEEEEEEEEEESCSCTTSCCSCEEEE-TTEECSTTCE
T ss_pred             eEEEEEEeecCcc-cCcCccCCceEecCCEEEEEEEeccCCCceEEEEeeEEeecCCCccCCccEEEEE-CCccCCCCEE
Confidence            3567899998752 33332  2368999999999999887889999999999999853    4799996 9999998763


Q ss_pred             c-ceee---eccCCCccceeEEEEEEeeEeC-CCCeEEEEEEEEEccCC
Q psy8304         372 S-RFTK---IKNFGASASVLSYAHFQAFKFP-DSMEVHFQCTIQICRYQ  415 (593)
Q Consensus       372 ~-~f~~---~~d~g~s~slla~a~f~AFKFp-ds~~Vyf~C~V~vC~~~  415 (593)
                      - ....   ...+|  .+-.++|.| +|||. +.+.|||||.|.+|...
T Consensus        82 ~~~~~~v~~~~~ng--~s~~~RFsf-~F~Fv~~~~~VYLHC~v~vC~~~  127 (176)
T 3qw9_A           82 FYSSKRVHFPIPHA--EVDKKRFSF-LFKSVFNTSLLFLHCELTLCSRK  127 (176)
T ss_dssp             EEEEEEEEETTTTE--EEEEEEEEE-ECCCCSSCSEEEEEEEEEEEESS
T ss_pred             EEeccccccccCCC--CcceEEEEE-EEEecCCCCeEEEEEeeEEECCC
Confidence            1 1111   00112  223568999 99998 47899999999999875

>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}

Probab=86.26  E-value=0.68  Score=34.31  Aligned_cols=27  Identities=11%  Similarity=0.118  Sum_probs=14.9

Q ss_pred             HHHHHHHHHHHHHHHhhheeecccccC
Q psy8304         538 FVLLGILVVSCLVSACLCIRLRPFSNK  564 (593)
Q Consensus       538 v~ll~~llvs~~va~~L~~r~r~~~~~  564 (593)
                      |+-.+++++.++.+.|+|+|+|+...+
T Consensus        16 VVgGv~~v~ii~~~~~~~~RRRr~~~k   42 (44)
T 2l2t_A           16 VIGGLFILVIVGLTFAVYVRRKSIKKK   42 (44)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCSSCC
T ss_pred             ehHHHHHHHHHHHHHHHHhhhhhhhhc
Confidence            333333334455666777777776543

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00