Psyllid ID: psy8363

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530------
MVASPALVPSPSAPLSQSMPGQMRSVGMAPSPSGSLNTPGQAQPTSSPCPTQEDQVYRDKIRQLSKYIEPLRRMIARAANDDIEKTTKMKKLLEILQSPNKRMPLETLLKCEHVLEKLDFKHSSLLRDHHPLLEAVSGALQSSNANHTLQRTFGPCLEILSGPLIKDLPLPVNRKRVEEPADDVPEVLQGEIARLDQRFKVSLDPTQQSGSKAIQLVCWLDDRHLPCVPPIQVSIPEDYPSHPPRCTMGHEHNTTPFLTSVKNALESRIKKLPLKYSVSQLLDTWEMSVRQACAPTRNPTSSPSISVKVKCSELRTKDKKELLKQLEELKTELANLRVAKVTGGAASKLSKIRVVRKAILRVYIVMHQKQKENMRNLIRKEHKKYKPLDLRPKKTRALRRRLTKHERKLKTLKEIRRRQAFPPRKDLPLPVNRKRVEEPADDVPEVLQGEIARLDQRFKVSLDPTQQSGSKAIQLVCWLDDRHLPCVPPIQVSIPEDYPSHPPRCTMGHEHNTTPFLTSVKNALESRIKKLPLKYS
ccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccHHHHHHHHHHccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHcccccHHHHHHHccHHHHHcccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccEEEEEEEccccccccccEEEEcccccccccccccccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHccHHHHHHccHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHcccccEEEccccccccccEEEEEEEEcccccccccccEEEccccccccccccccccccccccHHHHHHHHHHHHHHHcccccc
ccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHcccccHcHHHHHHHHHHHHHHccccccccccccccccccccHcccccHcccHEEEccccEEEEccccccccccEEEEEEEEccccccccccEEEEEccccccccccccccHHccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccccccccccEEEEEHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHccccccccccccccccccHHccccHHHHHHEEEccccEEEEEcccccccccEEEEEEEEccccccccccEEEEEccccccccccccccHHccccHHHHHHHHHHHHHHHHcccccc
mvaspalvpspsaplsqsmpgqmrsvgmapspsgslntpgqaqptsspcptqedqvYRDKIRQLSKYIEPLRRMIARAANDDIEKTTKMKKLLEILqspnkrmpletLLKCEHVLEKLdfkhssllrdhhpLLEAVSGAlqssnanhtlqrtfgpcleilsgplikdlplpvnrkrveepaddvpeVLQGEIARLDQrfkvsldptqqsgskaIQLVCwlddrhlpcvppiqvsipedypshpprctmghehnttpfLTSVKNALESRIKKLPLKYSVSQLLDTWEMSVRqacaptrnptsspsisvkvkcselrtKDKKELLKQLEELKTELANLRVAKVTggaasklsKIRVVRKAILRVYIVMHQKQKENMRNLIRKehkkykpldlrpkkTRALRRRLTKHERKLKTLKEIRRrqafpprkdlplpvnrkrveepaddvpeVLQGEIARLDQrfkvsldptqqsgskaIQLVCwlddrhlpcvppiqvsipedypshpprctmghehnttpfLTSVKNALESRIkklplkys
mvaspalvpspsaplsqsmPGQMRSVGMAPSPSGSLNTPGQaqptsspcptqedqvYRDKIRQLSKYIEPLRRMIARaanddiektTKMKKLLEilqspnkrmpLETLLKCEHVLEKLDFKHSSLLRDHHPLLEAVSGALQSSNANHTLQRTFGPCLEILSGPLIKDLPLPVNRKRVeepaddvpevLQGEIARLDQRFKvsldptqqsgsKAIQLVCWLDDRHLPCVPPIQVSIPEDYPSHPPRCTMGHEHNTTPFLTSVKNALESRIKKLPLKYSVSQLLDTWEMSVRQACaptrnptsspsisvkvkcselrtkdKKELLKQLEELKTelanlrvakvtggaasklskirvvRKAILRVYIVMhqkqkenmrnlirkehkkykpldlrpkktralrrrltkherklktlkeirrrqafpprkdlplpvnrkrveepaddvpevLQGEIARLDQRFKvsldptqqsgsKAIQLVCWLDDRHLPCVPPIQVSIPEDYPSHPPRCTMGHEHNTTPFLTSVKNALEsrikklplkys
MvaspalvpspsaplsQSMPGQMRSVGMAPSPSGSLNTPGQAQPTSSPCPTQEDQVYRDKIRQLSKYIEPLRRMIARAANDDIEKTTKMKKLLEILQSPNKRMPLETLLKCEHVLEKLDFKHSSLLRDHHPLLEAVSGALQSSNANHTLQRTFGPCLEILSGPLIKDLPLPVNRKRVEEPADDVPEVLQGEIARLDQRFKVSLDPTQQSGSKAIQLVCWLDDRHLPCVPPIQVSIPEDYPSHPPRCTMGHEHNTTPFLTSVKNALESRIKKLPLKYSVSQLLDTWEMSVRQACAPTRNPTSSPSISVKVKCSELRTkdkkellkqleelktelANLRVAKVTGGAASKLSKIRVVRKAILRVYIVMHQKQKENMRNLIRKEHKKYKPLDlrpkktralrrrltkHERKLKTLKEIRRRQAFPPRKDLPLPVNRKRVEEPADDVPEVLQGEIARLDQRFKVSLDPTQQSGSKAIQLVCWLDDRHLPCVPPIQVSIPEDYPSHPPRCTMGHEHNTTPFLTSVKNALESRIKKLPLKYS
************************************************************IRQLSKYIEPLRRMIARAA***********KLLEIL******MPLETLLKCEHVLEKLDFKHSSLLRDHHPLLEAVSGAL****ANHTLQRTFGPCLEILSGPLIKDLPLPV*******************IA******************KAIQLVCWLDDRHLPCVPPIQVSIP******************TPFLTSVKNALESRIKKLPLKYSVSQLLDTWEMSVRQ*************************************LKTELANLRVAKVTGGAASKLSKIRVVRKAILRVYIVMHQ******************************************************************************************************KAIQLVCWLDDRHLPCVPPIQVSI******************************************
*************************************************************RQLSKYIEPLR*******************LLEILQSPNKRMPLETLLKCEHVLE******************AVSGALQSSNANHTLQRTFGPCLEILSGPLIKD*************************ARLDQRFKVS*********KAIQLVCWLDDRHLPCVPPIQVSIPEDYPSHPPRCTMGHEHNTTPFLTSVKNALESRIKKLPLKYSVSQLLDTWEMSVR*******************************LLKQLEELKTELAN******************VVRKAILRVYIVMHQKQKEN*****RKEHKKYKPLDLRPKKTRALRR*******************AFPPRKDL*********************GEIARLDQRFKVSLDPTQQSGSKAIQLVCWLDDRHLPCVPPIQVSIPEDYPSHPPRCTMGHEHNTTPFLTSVKNALESRIKKLP****
*******************************************************VYRDKIRQLSKYIEPLRRMIARAANDDIEKTTKMKKLLEILQSPNKRMPLETLLKCEHVLEKLDFKHSSLLRDHHPLLEAVSGALQSSNANHTLQRTFGPCLEILSGPLIKDLPLPVNRKRVEEPADDVPEVLQGEIARLDQRFKVSLDPTQQSGSKAIQLVCWLDDRHLPCVPPIQVSIPEDYPSHPPRCTMGHEHNTTPFLTSVKNALESRIKKLPLKYSVSQLLDTWEMSVRQA***************KVKCSELRTKDKKELLKQLEELKTELANLRVAKVTGGAASKLSKIRVVRKAILRVYIVMHQKQKENMRNLIRKEHKKYKPLDLRPKKTRALRRRLTKHERKLKTLKEIRRRQAFPPRKDLPLPVNRKRVEEPADDVPEVLQGEIARLDQRFKVSLDPTQQSGSKAIQLVCWLDDRHLPCVPPIQVSIPEDYPSHPPRCTMGHEHNTTPFLTSVKNALESRIKKLPLKYS
***************************************************QEDQVYRDKIRQLSKYIEPLRRMIARAANDDIEKTTKMKKLLEILQSPNKRMPLETLLKCEHVLEKLDFKHSSLLRDHHPLLEAVSGALQSSNANHTLQRTFGPCLEILSGPLIKDLPLPVNR****EPADDVPEVLQGEIARLDQRFKVSLDPTQQSGSKAIQLVCWLDDRHLPCVPPIQVSIPEDYPSHPPRCTMGHEHNTTPFLTSVKNALESRIKKLPLKYSVSQLLDTWEMSVRQACAPTRNPTSSPSISVKVKCSELRTKDKKELLKQLEELKTELANLRVAKVTGGAASKLSKIRVVRKAILRVYIVMHQKQKENMRNLIRKEHKKYKPLDLRPKKTRALRRRLTKHERKLKTLKEIRRRQAFPPRKDLPLPVNR****E*ADDVPEVLQGEIARLDQRFKVSLDPTQQSGSKAIQLVCWLDDRHLPCVPPIQVSIPEDYPSHPPRCTMGHEHNTTPFLTSVKNALESRIKKLP****
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MVASPALVPSPSAPLSQSMPGQMRSVGMAPSPSGSLNTPGQAQPTSSPCPTQEDQVYRDKIRQLSKYIEPLRRMIARAANDDIEKTTKMKKLLEILQSPNKRMPLETLLKCEHVLEKLDFKHSSLLRDHHPLLEAVSGALQSSNANHTLQRTFGPCLEILSGPLIKDLPLPVNRKRVEEPADDVPEVLQGEIARLDQRFKVSLDPTQQSGSKAIQLVCWLDDRHLPCVPPIQVSIPEDYPSHPPRCTMGHEHNTTPFLTSVKNALESRIKKLPLKYSVSQLLDTWEMSVRQACAPTRNPTSSPSISVKVKCxxxxxxxxxxxxxxxxxxxxxxxxxxxxKVTGGAASKLSKIRVVRKAILRVYIVMHQKQKENMRNLIRKEHKKYKPLDLRPKKxxxxxxxxxxxxxxxxxxxxxRRRQAFPPRKDLPLPVNRKRVEEPADDVPEVLQGEIARLDQRFKVSLDPTQQSGSKAIQLVCWLDDRHLPCVPPIQVSIPEDYPSHPPRCTMGHEHNTTPFLTSVKNALESRIKKLPLKYS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query536 2.2.26 [Sep-21-2011]
Q5TP13762 Mediator of RNA polymeras yes N/A 0.541 0.380 0.528 8e-84
Q17BA4779 Mediator of RNA polymeras N/A N/A 0.537 0.369 0.530 2e-82
Q9Y149749 Mediator of RNA polymeras yes N/A 0.550 0.393 0.530 8e-73
Q7ZVN7809 Mediator of RNA polymeras yes N/A 0.485 0.321 0.445 1e-54
Q6NS15777 Mediator of RNA polymeras N/A N/A 0.490 0.338 0.432 7e-53
Q96RN5788 Mediator of RNA polymeras yes N/A 0.485 0.329 0.449 7e-51
Q924H2792 Mediator of RNA polymeras no N/A 0.488 0.330 0.440 4e-50
P17078123 60S ribosomal protein L35 no N/A 0.216 0.943 0.677 6e-34
Q6ZWV7123 60S ribosomal protein L35 no N/A 0.216 0.943 0.677 6e-34
Q69CJ9123 60S ribosomal protein L35 N/A N/A 0.218 0.951 0.663 8e-34
>sp|Q5TP13|MED15_ANOGA Mediator of RNA polymerase II transcription subunit 15 OS=Anopheles gambiae GN=MED15 PE=3 SV=3 Back     alignment and function desciption
 Score =  311 bits (797), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 166/314 (52%), Positives = 216/314 (68%), Gaps = 24/314 (7%)

Query: 1   MVASPALVPSPSAPLSQSMPGQMRSVGMAPSPSGSLNTPGQ-AQPTSSPCPTQEDQVYRD 59
           M+ SPAL+PSP+      M G  +   +  SP GSLNTPGQ      SP   Q++Q+YR+
Sbjct: 446 MIPSPALIPSPNP----HMGGVAQRSTIGQSPGGSLNTPGQPGGAVPSPLNPQDEQLYRE 501

Query: 60  KIRQLSKYIEPLRRMIARAANDDIEKTTKMKKLLEILQSPNKRMPLETLLKCEHVLEKLD 119
           K R L+KYIEPL+RMIA+  NDDI+K  KMK+LLEIL +P+ R+PLETL KCE  L    
Sbjct: 502 KYRALTKYIEPLKRMIAKMENDDIDKIAKMKRLLEILSNPSVRIPLETLHKCEAALTS-- 559

Query: 120 FKHSSLLRD---HHPLLEAVSGALQSSNANHTLQRTFGPCLEILSGPLIKDLPLPVNRKR 176
                 +R+   ++PL+EAVS +LQ++  NHTLQRTF PCLE L GP IK+LP P  + R
Sbjct: 560 --QLGSIRETPTNNPLVEAVSSSLQAATGNHTLQRTFRPCLEALFGPDIKNLPPPAKQSR 617

Query: 177 VE---------EPADDVPEVLQGEIARLDQRFKVSLDPTQQSGSKAIQLVCWLDDRHLPC 227
           +              ++P +LQGEIARLDQ+FKVSLD    SG++ I+L+CWLDD++LPC
Sbjct: 618 LALDDTGAAVGTGGGEIPHILQGEIARLDQKFKVSLDQCAISGTRTIKLICWLDDKNLPC 677

Query: 228 VPPIQVSIPEDYPSHPPRCTM-GHEHNTTPFLTSVKNALESRIKKLPLKYSVSQLLDTWE 286
           VPP+ V+IPEDYPS  P C++   E+N TPFL  V+ +L +RI KLP  +++S LLDTWE
Sbjct: 678 VPPVAVTIPEDYPSTAPSCSLIEQEYNATPFLILVQKSLMARICKLPGLFTLSHLLDTWE 737

Query: 287 MSVRQACAPTRNPT 300
           MSVRQAC+P  NPT
Sbjct: 738 MSVRQACSP--NPT 749
Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.
Anopheles gambiae (taxid: 7165)
>sp|Q17BA4|MED15_AEDAE Mediator of RNA polymerase II transcription subunit 15 OS=Aedes aegypti GN=MED15 PE=3 SV=1 Back     alignment and function description
>sp|Q9Y149|MED15_DROME Mediator of RNA polymerase II transcription subunit 15 OS=Drosophila melanogaster GN=MED15 PE=2 SV=1 Back     alignment and function description
>sp|Q7ZVN7|MED15_DANRE Mediator of RNA polymerase II transcription subunit 15 OS=Danio rerio GN=med15 PE=2 SV=1 Back     alignment and function description
>sp|Q6NS15|MED15_XENLA Mediator of RNA polymerase II transcription subunit 15 OS=Xenopus laevis GN=med15 PE=1 SV=1 Back     alignment and function description
>sp|Q96RN5|MED15_HUMAN Mediator of RNA polymerase II transcription subunit 15 OS=Homo sapiens GN=MED15 PE=1 SV=2 Back     alignment and function description
>sp|Q924H2|MED15_MOUSE Mediator of RNA polymerase II transcription subunit 15 OS=Mus musculus GN=Med15 PE=2 SV=2 Back     alignment and function description
>sp|P17078|RL35_RAT 60S ribosomal protein L35 OS=Rattus norvegicus GN=Rpl35 PE=1 SV=3 Back     alignment and function description
>sp|Q6ZWV7|RL35_MOUSE 60S ribosomal protein L35 OS=Mus musculus GN=Rpl35 PE=2 SV=1 Back     alignment and function description
>sp|Q69CJ9|RL35_OPHHA 60S ribosomal protein L35 OS=Ophiophagus hannah GN=RPL35 PE=2 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query536
383856992632 PREDICTED: mediator of RNA polymerase II 0.561 0.476 0.654 1e-111
340729078 788 PREDICTED: mediator of RNA polymerase II 0.595 0.404 0.618 1e-111
350401471632 PREDICTED: mediator of RNA polymerase II 0.561 0.476 0.647 1e-110
328788615612 PREDICTED: mediator of RNA polymerase II 0.561 0.491 0.647 1e-110
332027929633 Mediator of RNA polymerase II transcript 0.544 0.461 0.655 1e-107
322801617606 hypothetical protein SINV_09503 [Solenop 0.542 0.480 0.662 1e-107
307191559490 Mediator of RNA polymerase II transcript 0.557 0.610 0.648 1e-106
307168556633 Mediator of RNA polymerase II transcript 0.563 0.477 0.632 1e-105
270007150605 hypothetical protein TcasGA2_TC013685 [T 0.554 0.490 0.634 1e-103
91082463608 PREDICTED: similar to mediator complex [ 0.554 0.488 0.634 1e-103
>gi|383856992|ref|XP_003703990.1| PREDICTED: mediator of RNA polymerase II transcription subunit 15-like [Megachile rotundata] Back     alignment and taxonomy information
 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 208/318 (65%), Positives = 248/318 (77%), Gaps = 17/318 (5%)

Query: 1   MVASPALVPSPSAPLSQSMPGQMRSVGMAPSPSGSLNTPGQAQPTSSPCPTQEDQVYRDK 60
           MVASPALVPSPS P    M G  RSVGMAPSPS SLNTPG    T  P P QEDQ YRDK
Sbjct: 315 MVASPALVPSPS-PQHAIMAGSQRSVGMAPSPSSSLNTPGGVGAT--PSPQQEDQAYRDK 371

Query: 61  IRQLSKYIEPLRRMIARAAND-DIEKTTKMKKLLEILQSPNKRMPLETLLKCEHVLEKLD 119
           +RQLSKY+EPLRRMIA+  N+ +++K +KMKKLLEIL +P+KRMPL+TLLKCE VLEKLD
Sbjct: 372 VRQLSKYVEPLRRMIAKMGNEGNVDKLSKMKKLLEILSNPSKRMPLDTLLKCEVVLEKLD 431

Query: 120 FKHS--------SLLRDHH---PLLEAVSGALQSSNANHTLQRTFGPCLEILSGPLIKDL 168
           FK S        + L++HH   PLLEAVS  LQS   NHTLQRTFGPCLE L GP IK+L
Sbjct: 432 FKRSDASVGPPVTTLKEHHFFSPLLEAVSTHLQSPVVNHTLQRTFGPCLEALFGPEIKNL 491

Query: 169 PLPVNRKRVEEPADDVPEVLQGEIARLDQRFKVSLDPTQQSGSKAIQLVCWLDDRHLPCV 228
           P P+ ++++EE   ++P+VLQGEIARLDQRFKVSLDP QQ+GSK IQL+CWLDDRHLPCV
Sbjct: 492 PPPLKKQKIEESPSEIPDVLQGEIARLDQRFKVSLDPAQQNGSKCIQLICWLDDRHLPCV 551

Query: 229 PPIQVSIPEDYPSHPPRCTMG-HEHNTTPFLTSVKNALESRIKKLPLKYSVSQLLDTWEM 287
           PP+ V++P DYP  PPRC M  HE+ TT FL +V+ AL +RI KLP ++SVSQLLDTWEM
Sbjct: 552 PPVSVTVPADYPLTPPRCVMAPHEYATT-FLCAVQKALNARITKLPRRFSVSQLLDTWEM 610

Query: 288 SVRQACAPTRNPTSSPSI 305
           SVRQA AP++ P ++ ++
Sbjct: 611 SVRQASAPSQTPVTASTV 628

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|340729078|ref|XP_003402835.1| PREDICTED: mediator of RNA polymerase II transcription subunit 15-like, partial [Bombus terrestris] Back     alignment and taxonomy information
>gi|350401471|ref|XP_003486163.1| PREDICTED: mediator of RNA polymerase II transcription subunit 15-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|328788615|ref|XP_623876.3| PREDICTED: mediator of RNA polymerase II transcription subunit 15 [Apis mellifera] Back     alignment and taxonomy information
>gi|332027929|gb|EGI67983.1| Mediator of RNA polymerase II transcription subunit 15 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|322801617|gb|EFZ22258.1| hypothetical protein SINV_09503 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|307191559|gb|EFN75057.1| Mediator of RNA polymerase II transcription subunit 15 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|307168556|gb|EFN61614.1| Mediator of RNA polymerase II transcription subunit 15 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|270007150|gb|EFA03598.1| hypothetical protein TcasGA2_TC013685 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|91082463|ref|XP_971521.1| PREDICTED: similar to mediator complex [Tribolium castaneum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query536
FB|FBgn0027592749 MED15 "Mediator complex subuni 0.531 0.380 0.523 8.4e-74
UNIPROTKB|A5PKJ6711 MED15 "MED15 protein" [Bos tau 0.490 0.369 0.429 1.8e-52
UNIPROTKB|D4A3J8596 Med15 "Protein Med15" [Rattus 0.490 0.441 0.429 2.3e-52
UNIPROTKB|F1RK85710 MED15 "Uncharacterized protein 0.490 0.370 0.421 3.7e-52
UNIPROTKB|I3LL78710 MED15 "Uncharacterized protein 0.490 0.370 0.421 3.7e-52
UNIPROTKB|F1M6N5744 Med15 "Protein Med15" [Rattus 0.490 0.353 0.429 4.2e-52
UNIPROTKB|G3V1P5722 MED15 "PC2 (Positive cofactor 0.490 0.364 0.421 9.9e-52
UNIPROTKB|F5GZU5637 MED15 "Mediator of RNA polymer 0.490 0.412 0.421 9.9e-52
UNIPROTKB|J9P5D1553 MED15 "Uncharacterized protein 0.490 0.475 0.418 1.3e-51
RGD|1307560790 Med15 "mediator complex subuni 0.490 0.332 0.429 1.7e-51
FB|FBgn0027592 MED15 "Mediator complex subunit 15" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 745 (267.3 bits), Expect = 8.4e-74, P = 8.4e-74
 Identities = 156/298 (52%), Positives = 204/298 (68%)

Query:    19 MPGQMRSVGMAPSPSGSLNTPGQAQPTSSPCPTQEDQVYRDKIRQLSKYIEPLRRMIARA 78
             M    R++    SPS S+NTPGQ    +SP   QE+ +YR+K +QL+KYIEPL+RM+A+ 
Sbjct:   450 MQNSQRNIRQQ-SPSASINTPGQVTG-NSPFNPQEEALYREKYKQLTKYIEPLKRMLAKI 507

Query:    79 AND--DIEKTTKMKKLLEILQSPNKRMPLETLLKCEHVLEKLD---FKHSSLLRDHHPLL 133
             +ND  ++EK TKM KLLEIL +P +R+PLETLLKCE  LEK+D   +      +  +PLL
Sbjct:   508 SNDGTNVEKMTKMSKLLEILCNPTQRVPLETLLKCEKALEKMDLISYSGQQFGKSSNPLL 567

Query:   134 EAVSGALQSSNANHTLQRTFGPCLEILSGPLIKDLPLPVNRKRVEEPA----DDVPEVLQ 189
             E ++  LQS  ANHTL RTF P LE+L G  I   P+P  R RVEE +     +VP VLQ
Sbjct:   568 EVINTTLQSPVANHTLYRTFRPTLELLFGTDIT-APVPAKRPRVEEKSTSFEQEVPHVLQ 626

Query:   190 GEIARLDQRFKVSLDPTQQSGSKAIQLVCWLDDRHLPCVPPIQVSIPEDYPSHPPRCTMG 249
             GEIARLD +FKV LD T Q  +KAI+L+C LDD+ LP VPP+ VS+PE+YP   P C++ 
Sbjct:   627 GEIARLDTKFKVKLDTTSQINNKAIRLICCLDDKRLPSVPPVSVSVPEEYPWQAPDCSLA 686

Query:   250 H-EHNTTPFLTSVKNALESRIKKLPLKYSVSQLLDTWEMSVRQACAPTRNPTSSPSIS 306
               E++ TPFL +V+ AL +RI KLP  YS+S LLDTWEM+VRQAC+P   P +   +S
Sbjct:   687 EQEYSATPFLQTVQQALIARISKLPKNYSLSHLLDTWEMAVRQACSPQSKPRAVCELS 744
GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=ISS
GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA;ISS
GO:0016592 "mediator complex" evidence=IEA;ISS
GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IEA
UNIPROTKB|A5PKJ6 MED15 "MED15 protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|D4A3J8 Med15 "Protein Med15" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1RK85 MED15 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|I3LL78 MED15 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1M6N5 Med15 "Protein Med15" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|G3V1P5 MED15 "PC2 (Positive cofactor 2, multiprotein complex) glutamine/Q-rich-associated protein, isoform CRA_f" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F5GZU5 MED15 "Mediator of RNA polymerase II transcription subunit 15" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|J9P5D1 MED15 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
RGD|1307560 Med15 "mediator complex subunit 15" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P34662RL35_CAEELNo assigned EC number0.60740.19580.8536yesN/A
Q9Y149MED15_DROMENo assigned EC number0.53070.55030.3938yesN/A
Q9M3D2RL353_ARATHNo assigned EC number0.59320.21640.9430yesN/A
Q9SF53RL351_ARATHNo assigned EC number0.59320.21640.9430yesN/A
Q5TP13MED15_ANOGANo assigned EC number0.52860.54100.3805yesN/A
Q29361RL35_PIGNo assigned EC number0.66940.21640.9430yesN/A
Q54J23RL35_DICDINo assigned EC number0.50420.21820.9285yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query536
pfam09606768 pfam09606, Med15, ARC105 or Med15 subunit of Media 2e-93
pfam09606768 pfam09606, Med15, ARC105 or Med15 subunit of Media 6e-31
pfam0083158 pfam00831, Ribosomal_L29, Ribosomal L29 protein 1e-13
cd0042757 cd00427, Ribosomal_L29_HIP, Ribosomal L29 protein/ 1e-13
COG025569 COG0255, RpmC, Ribosomal protein L29 [Translation, 2e-12
PRK1454969 PRK14549, PRK14549, 50S ribosomal protein L29P; Pr 1e-11
TIGR0001255 TIGR00012, L29, ribosomal protein L29 8e-11
PRK0030666 PRK00306, PRK00306, 50S ribosomal protein L29; Rev 6e-10
PRK0046187 PRK00461, rpmC, 50S ribosomal protein L29; Reviewe 4e-05
TIGR01597255 TIGR01597, PYST-B, Plasmodium yoelii subtelomeric 0.004
>gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal Back     alignment and domain information 
 Score =  301 bits (772), Expect = 2e-93
 Identities = 165/314 (52%), Positives = 213/314 (67%), Gaps = 8/314 (2%)

Query: 1   MVASP-ALVPSPSAPLSQSMPGQMRSVGMAPSPSGSLNTPGQAQPTSSPCPTQEDQVYRD 59
           M+ SP AL+PSPS  +SQS   Q        SP G LNTPGQ+   +SP   QE+Q+YR+
Sbjct: 452 MIPSPPALMPSPSPQMSQSPASQRTIQQDMVSPGGPLNTPGQSS-VNSPANPQEEQLYRE 510

Query: 60  KIRQLSKYIEPLRRMIARAAND--DIEKTTKMKKLLEILQSPNKRMPLETLLKCEHVLEK 117
           K +QLSKYIEPLRRMIA+  ND   I+  +KMK LL+IL +P+ R PLETL KCE  LEK
Sbjct: 511 KYKQLSKYIEPLRRMIAKIDNDEGRIKDLSKMKSLLDILSNPSSRCPLETLQKCEIALEK 570

Query: 118 L--DFKHSSLLRDHHPLLEAVSGALQSSNANHTLQRTFGPCLEILSGPLIKDLPLPVNRK 175
           L       +     +PLLEAV   LQS   NHTL RTF P LE L GP IK LP+P  ++
Sbjct: 571 LKNQMGTPTPPPLCNPLLEAVLANLQSPVFNHTLYRTFRPTLEALFGPDIKGLPVPAKKR 630

Query: 176 RVEE-PADDVPEVLQGEIARLDQRFKVSLDPTQQSGSKAIQLVCWLDDRHLPCVPPIQVS 234
           RVEE    ++P VLQGEIARLDQ+FKV+LDP+ QS +  I+L+C LDD++LP VPP+ +S
Sbjct: 631 RVEEDERQEIPHVLQGEIARLDQKFKVNLDPSHQSNNGTIKLICKLDDKNLPSVPPLALS 690

Query: 235 IPEDYPSHPPRCTM-GHEHNTTPFLTSVKNALESRIKKLPLKYSVSQLLDTWEMSVRQAC 293
           +PE+YP   P C++   E+N TPFL +V+ +L +R+ KLP  +S++ LL+TWEMSVRQAC
Sbjct: 691 VPEEYPDQSPSCSLDEQEYNATPFLQTVQKSLHARLSKLPGLHSLTHLLNTWEMSVRQAC 750

Query: 294 APTRNPTSSPSISV 307
           +P     +    SV
Sbjct: 751 SPNPTNVAPDFTSV 764

The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, Med15 is a critical transducer of gene activation signals that control early metazoan development. Length = 768
>gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal Back     alignment and domain information
>gnl|CDD|201463 pfam00831, Ribosomal_L29, Ribosomal L29 protein Back     alignment and domain information
>gnl|CDD|238243 cd00427, Ribosomal_L29_HIP, Ribosomal L29 protein/HIP Back     alignment and domain information
>gnl|CDD|223333 COG0255, RpmC, Ribosomal protein L29 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|237751 PRK14549, PRK14549, 50S ribosomal protein L29P; Provisional Back     alignment and domain information
>gnl|CDD|129124 TIGR00012, L29, ribosomal protein L29 Back     alignment and domain information
>gnl|CDD|178971 PRK00306, PRK00306, 50S ribosomal protein L29; Reviewed Back     alignment and domain information
>gnl|CDD|234773 PRK00461, rpmC, 50S ribosomal protein L29; Reviewed Back     alignment and domain information
>gnl|CDD|130658 TIGR01597, PYST-B, Plasmodium yoelii subtelomeric family PYST-B Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 536
PF09606799 Med15: ARC105 or Med15 subunit of Mediator complex 100.0
KOG4274|consensus742 100.0
KOG3436|consensus123 100.0
PF09606799 Med15: ARC105 or Med15 subunit of Mediator complex 100.0
KOG4274|consensus742 99.93
PRK1454969 50S ribosomal protein L29P; Provisional 99.8
CHL0015467 rpl29 ribosomal protein L29; Validated 99.77
COG025569 RpmC Ribosomal protein L29 [Translation, ribosomal 99.77
PRK0030666 50S ribosomal protein L29; Reviewed 99.71
PF0083158 Ribosomal_L29: Ribosomal L29 protein; InterPro: IP 99.69
PRK0046187 rpmC 50S ribosomal protein L29; Reviewed 99.69
cd0042757 Ribosomal_L29_HIP Ribosomal L29 protein/HIP. L29 i 99.64
TIGR0001255 L29 ribosomal protein L29. called L29 in prokaryot 99.63
PF0698487 MRP-L47: Mitochondrial 39-S ribosomal protein L47 95.46
PF05773113 RWD: RWD domain; InterPro: IPR006575 The RWD eukar 90.39
KOG3331|consensus213 89.8
PF05773113 RWD: RWD domain; InterPro: IPR006575 The RWD eukar 86.9
>PF09606 Med15: ARC105 or Med15 subunit of Mediator complex non-fungal; InterPro: IPR019087 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes Back     alignment and domain information 
Probab=100.00  E-value=3.6e-106  Score=891.58  Aligned_cols=303  Identities=52%  Similarity=0.845  Sum_probs=0.0

Q ss_pred             CCCCCC-CccCCCCCCCCCCCC--CCCcccccCCCCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHHhhhchHHHHHHHH
Q psy8363           1 MVASPA-LVPSPSAPLSQSMPG--QMRSVGMAPSPSGSLNTPGQAQPTSSPCPTQEDQVYRDKIRQLSKYIEPLRRMIAR   77 (536)
Q Consensus         1 ~~~sp~-~~~sps~~~~~~~~~--~~~~~~~~pSPg~~lntP~~~~~sp~~~~~~eeq~Y~eKlrqLskYIePL~RMI~k   77 (536)
                      |+|||+ ++|||||++++++++  +++++ ++ |||++|||||+|++.+||+|+.||++|+||||||+||||||||||+|
T Consensus       482 ~~psP~~~~p~~spq~~q~~~~~r~~~~~-~v-spg~~~ntpg~~~~~~sP~~~~e~~~y~eK~~qLskYiePL~rmi~k  559 (799)
T PF09606_consen  482 MAPSPQSHVPSPSPQPSQSPQQQRTPGQF-SV-SPGGPLNTPGNPGSVMSPANPSEEQAYLEKLRQLSKYIEPLRRMINK  559 (799)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCCchhhCCCCCCCcccCCCCCCCCCCC-CC-CCCCcCCCCCCcccCCCCCCchHHHHHHHHHHHhcccccHHHHHHHh
Confidence            689994 999999998865433  34455 57 99999999999988888889999999999999999999999999999


Q ss_pred             hhcC--ChhhHHhHHHHHHHhcCCCCCcchhhHHhHHHHHhhhhccccccc--cccchHHHHHHHhhcCCCccccccccc
Q psy8363          78 AAND--DIEKTTKMKKLLEILQSPNKRMPLETLLKCEHVLEKLDFKHSSLL--RDHHPLLEAVSGALQSSNANHTLQRTF  153 (536)
Q Consensus        78 ~~~~--~~~~lsKmk~LldIL~np~kr~pL~TL~KCE~~LeKl~~~~~~~~--~~~~PLLdaV~ani~SP~~NHTL~RTF  153 (536)
                      |+||  +++||+|||+|||||+||+|||||+||+|||+|||||++++++..  ..|+||||||++||+||+|||||+|||
T Consensus       560 ~~~~~~~~~~l~kmk~ll~iL~~p~~r~pl~tL~kce~~l~kl~~~~~~~~~~p~~~pll~~v~~~l~sp~~nhtL~rtf  639 (799)
T PF09606_consen  560 MDKDEGRKKDLSKMKSLLDILSNPSKRCPLETLQKCEIVLEKLKNDMGVPTPPPMCQPLLDAVMSNLQSPVFNHTLQRTF  639 (799)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccCCCchhHHHhHHHHHHHhcCCccCCchHHHHHHHHHHHHhhcccCCCCCCCCCchHHHHHHhhcCCcccchhHHHHH
Confidence            9977  689999999999999999999999999999999999999998643  489999999999999999999999999


Q ss_pred             cchhhhhcCCCCCCCCCCccccCCCCCC-CCchhhhhHHHhhccCCcccccCCCCCCCCCcEEEEEEecCCCCCCCCCeE
Q psy8363         154 GPCLEILSGPLIKDLPLPVNRKRVEEPA-DDVPEVLQGEIARLDQRFKVSLDPTQQSGSKAIQLVCWLDDRHLPCVPPIQ  232 (536)
Q Consensus       154 ~Pam~al~Gp~i~~~~~P~kr~~~ee~~-~~ip~vlQgEiarLd~kF~V~lDp~~~~~~~~i~LiC~LdDk~LP~VPPl~  232 (536)
                      +|||++||||+|+++++|.||+|+||++ ++||+||||||||||+||+|+|||++++++|+||||||||||+|||||||+
T Consensus       640 ~p~~~~~~g~~~~~~~~~~k~~~~~~~~~~~ip~~lqgEva~Ld~kF~v~ldp~~~~~~~~v~Lic~Ldd~~LP~VPPl~  719 (799)
T PF09606_consen  640 GPAMTALHGPPIKAPPPPPKKRRLEEDERQSIPNVLQGEVARLDPKFKVNLDPSHCSGNGSVHLICKLDDKNLPSVPPLR  719 (799)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHhhccCCCCCCCCCcchhcccchhhhhhhHHHHHHHHHHhcccceeecChhccCCCCeEEEEEEeCCCCCCCCCCee
Confidence            9999999999999988899998886654 999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCCCCCCccccC-CcCCCCchHHHHHHHHHHHHhhCCCcccHHHHHHHHHHHHHHHhcCCCCCCCCCCc
Q psy8363         233 VSIPEDYPSHPPRCTMG-HEHNTTPFLTSVKNALESRIKKLPLKYSVSQLLDTWEMSVRQACAPTRNPTSSPSI  305 (536)
Q Consensus       233 v~vP~dYP~~sP~~~~~-~~y~~t~FL~~v~~~~~sRL~~lP~~~SvT~lL~tWe~SvrQac~~~~~~~ap~t~  305 (536)
                      |+||+|||++||.|.++ |+|++++||.+|+++|++||++||++||||+|||||||||||||++..+..++++.
T Consensus       720 l~vP~~YP~~sp~~~~~~~~y~~~~Fl~~v~~~~~~Rl~~lP~~~svt~lL~tWe~svrqa~~~~~~~~~~~~~  793 (799)
T PF09606_consen  720 LTVPADYPRQSPQCSVDRDEYDATPFLQDVQNALTSRLAKLPDKHSVTQLLNTWEMSVRQACAPNQSSVAPSTF  793 (799)
T ss_dssp             --------------------------------------------------------------------------
T ss_pred             EeCCCCCCccCCcCcccHHHhccChHHHHHHHHHHHHHHhCCCceeHHHHHHHHHHHHHHHHhhhccccccccc
Confidence            99999999999999988 99999999999999999999999999999999999999999999999999999883

Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. The proteins in this entry represent subunit Med15 of the Mediator complex. They contain a single copy of the approximately 70 residue ARC105 domain. The ARC105 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, ARC105 is a critical transducer of gene activation signals that control early metazoan development []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 2GUT_A.
>KOG4274|consensus Back     alignment and domain information
>KOG3436|consensus Back     alignment and domain information
>PF09606 Med15: ARC105 or Med15 subunit of Mediator complex non-fungal; InterPro: IPR019087 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes Back     alignment and domain information
>KOG4274|consensus Back     alignment and domain information
>PRK14549 50S ribosomal protein L29P; Provisional Back     alignment and domain information
>CHL00154 rpl29 ribosomal protein L29; Validated Back     alignment and domain information
>COG0255 RpmC Ribosomal protein L29 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK00306 50S ribosomal protein L29; Reviewed Back     alignment and domain information
>PF00831 Ribosomal_L29: Ribosomal L29 protein; InterPro: IPR001854 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>PRK00461 rpmC 50S ribosomal protein L29; Reviewed Back     alignment and domain information
>cd00427 Ribosomal_L29_HIP Ribosomal L29 protein/HIP Back     alignment and domain information
>TIGR00012 L29 ribosomal protein L29 Back     alignment and domain information
>PF06984 MRP-L47: Mitochondrial 39-S ribosomal protein L47 (MRP-L47); InterPro: IPR010729 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO) Back     alignment and domain information
>KOG3331|consensus Back     alignment and domain information
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query536
2zkr_v123 Structure Of A Mammalian Ribosomal 60s Subunit With 2e-16
4a17_U124 T.Thermophila 60s Ribosomal Subunit In Complex With 2e-05
>pdb|2ZKR|VV Chain v, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 123 Back     alignment and structure 
Iteration: 1

 Score = 84.0 bits (206), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 53/119 (44%), Positives = 65/119 (54%), Gaps = 2/119 (1%)
Query: 307 VKVKCSELRTXXXXXXXXXXXXXXXXXANLRVAKVTGGAASKLSKIRVVRKAILRVYIVM 366
            K+K  +LR                  + LRVAKVTGGAASKLSKIRVVRK+I RV  V+
Sbjct: 2   AKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVI 61
Query: 367 HQKQKENMRNLIRKEHKKYKPLDXXXXXXXXXXXXXXXHERKLKTLKEIRRRQAFPPRK 425
           +Q QKEN+R   +   KKYKPLD               HE  LKT K+ R+ + +P RK
Sbjct: 62  NQTQKENLRKFYK--GKKYKPLDLRPKKTRAMRRRLNKHEENLKTKKQQRKERLYPLRK 118
>pdb|4A17|U Chain U, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 5s Rrna, 5.8s Rrna And Proteins Of Molecule 2. Length = 124 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query536
4a17_U124 RPL35, 60S ribosomal protein L21; eukaryotic ribos 8e-46
2zkr_v123 60S ribosomal protein L35; protein-RNA complex, 60 5e-45
3iz5_C 389 60S ribosomal protein L3 (L3P); eukaryotic ribosom 4e-43
3u5e_H191 L8, RP24, YL11, 60S ribosomal protein L9-A; transl 5e-42
3jyw_X86 60S ribosomal protein L35; eukaryotic ribosome, RA 1e-24
1vq8_V71 50S ribosomal protein L29P; ribosome 50S, protein- 9e-21
3v2d_272 50S ribosomal protein L29; ribosome associated inh 5e-11
3r8s_Y63 50S ribosomal protein L29; protein biosynthesis, R 1e-10
1r73_A66 TM1492, 50S ribosomal protein L29; ribosome, struc 3e-10
2zjr_V67 50S ribosomal protein L29; ribosome, large ribosom 2e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-07
3bbo_Z173 Ribosomal protein L29; large ribosomal subunit, sp 4e-04
>4a17_U RPL35, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_U 4a1c_U 4a1e_U Length = 124 Back     alignment and structure
 Score =  155 bits (394), Expect = 8e-46
 Identities = 47/120 (39%), Positives = 83/120 (69%), Gaps = 2/120 (1%)

Query: 306 SVKVKCSELRTKDKKELLKQLEELKTELANLRVAKVTGGAASKLSKIRVVRKAILRVYIV 365
              V+  +LRT+ +++L+ +L +L+TEL+ LR+AK+ GG A+KL +I +VRKAI +   +
Sbjct: 2   DKSVRVFKLRTQTEEQLVGELGKLQTELSQLRIAKIAGGTANKLGRIGIVRKAIAKYLTI 61

Query: 366 MHQKQKENMRNLIRKEHKKYKPLDLRPKKTRALRRRLTKHERKLKTLKEIRRRQAFPPRK 425
           +++K+++ +++  +   K  KPLD+R KKTRA+RR+LTK +R+   +K  ++   F  RK
Sbjct: 62  INEKRRQAVKDQFKG--KSLKPLDIRVKKTRAIRRKLTKKQREAVLVKTQKKLNNFGLRK 119
>2zkr_v 60S ribosomal protein L35; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 123 Back     alignment and structure
>3u5e_H L8, RP24, YL11, 60S ribosomal protein L9-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_F 1s1i_H 3izs_F* 3j16_F 3o5h_I 3o58_I 3u5i_H 3jyw_H Length = 191 Back     alignment and structure
>3jyw_X 60S ribosomal protein L35; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} Length = 86 Back     alignment and structure
>1vq8_V 50S ribosomal protein L29P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: a.2.2.1 PDB: 1vq4_V* 1vq5_V* 1vq6_V* 1vq7_V* 1s72_V* 1vq9_V* 1vqk_V* 1vql_V* 1vqm_V* 1vqn_V* 1vqo_V* 1vqp_V* 1yhq_V* 1yi2_V* 1yij_V* 1yit_V* 1yj9_V* 1yjn_V* 1yjw_V* 2otj_V* ... Length = 71 Back     alignment and structure
>3v2d_2 50S ribosomal protein L29; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_W 1vsa_W 2j03_2 2jl6_2 2jl8_2 2v47_2 2v49_2 2wdi_2 2wdj_2 2wdl_2 2wdn_2 2wh2_2 2wh4_2 2wrj_2 2wrl_2 2wro_2 2wrr_2 2x9s_2 2x9u_2 2xg0_2 ... Length = 72 Back     alignment and structure
>3r8s_Y 50S ribosomal protein L29; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_W 1p86_W 1vs8_X 1vs6_X 2aw4_X 2awb_X 1vt2_Y 2i2v_Y 2j28_X 2i2t_Y* 2qao_X* 2qba_X* 2qbc_X* 2qbe_X 2qbg_X 2qbi_X* 2qbk_X* 2qov_X 2qox_X 2qoz_X* ... Length = 63 Back     alignment and structure
>1r73_A TM1492, 50S ribosomal protein L29; ribosome, structural genomics, PSI, protein structure initiative, joint center for structural genomics; NMR {Thermotoga maritima} SCOP: a.2.2.1 Length = 66 Back     alignment and structure
>2zjr_V 50S ribosomal protein L29; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: a.2.2.1 PDB: 1nwx_W* 1nwy_W* 1sm1_W* 1xbp_W* 2aar_W 2d3o_W 2zjp_V* 2zjq_V 1nkw_W 3cf5_V* 3dll_V* 3pio_V* 3pip_V* 1pnu_W 1pny_W 1vor_Y 1vou_Y 1vow_Y 1voy_Y 1vp0_Y Length = 67 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3bbo_Z Ribosomal protein L29; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Length = 173 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query536
4a17_U124 RPL35, 60S ribosomal protein L21; eukaryotic ribos 100.0
3u5e_h120 60S ribosomal protein L35-A, 60S ribosomal protein 100.0
2zkr_v123 60S ribosomal protein L35; protein-RNA complex, 60 100.0
3iz5_c124 60S ribosomal protein L35 (L29P); eukaryotic ribos 100.0
1vq8_V71 50S ribosomal protein L29P; ribosome 50S, protein- 99.85
3j21_W72 50S ribosomal protein L29P; archaea, archaeal, KIN 99.84
3jyw_X86 60S ribosomal protein L35; eukaryotic ribosome, RA 99.84
3v2d_272 50S ribosomal protein L29; ribosome associated inh 99.81
1r73_A66 TM1492, 50S ribosomal protein L29; ribosome, struc 99.81
2zjr_V67 50S ribosomal protein L29; ribosome, large ribosom 99.81
3r8s_Y63 50S ribosomal protein L29; protein biosynthesis, R 99.79
3bbo_Z173 Ribosomal protein L29; large ribosomal subunit, sp 99.79
>4a17_U RPL35, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_U 4a1c_U 4a1e_U Back     alignment and structure
Probab=100.00  E-value=1.1e-46  Score=338.03  Aligned_cols=123  Identities=38%  Similarity=0.619  Sum_probs=119.5

Q ss_pred             ccccccchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHhhhHHHHHHHHhHHHHHHHHHHHHhccCc
Q psy8363         305 ISVKVKCSELRTKDKKELLKQLEELKTELANLRVAKVTGGAASKLSKIRVVRKAILRVYIVMHQKQKENMRNLIRKEHKK  384 (536)
Q Consensus       305 ~m~kmKa~ELR~kS~eEL~kqL~eLK~EL~~LR~qkvtG~al~k~skIr~vRK~IARVlTVlnqkqr~~lr~~yk~k~kk  384 (536)
                      ||++||+.|||++|.+||.++|.||+.|||+||||++|||.++|+++|+.|||+||||+||++|+++++||+||+  |||
T Consensus         1 M~~~mKa~ELR~~s~eEL~~~L~eLK~ELf~LRfq~atggqlen~~rIr~vRRdIARi~Tvl~er~~~~lr~~yk--~kk   78 (124)
T 4a17_U            1 MDKSVRVFKLRTQTEEQLVGELGKLQTELSQLRIAKIAGGTANKLGRIGIVRKAIAKYLTIINEKRRQAVKDQFK--GKS   78 (124)
T ss_dssp             -CCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TCS
T ss_pred             CCcccCHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCC
Confidence            789999999999999999999999999999999999999669999999999999999999999999999999996  999


Q ss_pred             cCCCCCCchhhHHHHhhcChhHHhhhhHHHHHHhhcCCCCcccCC
Q psy8363         385 YKPLDLRPKKTRALRRRLTKHERKLKTLKEIRRRQAFPPRKDLPL  429 (536)
Q Consensus       385 ~~PlDLRpKkTRA~Rr~Ltk~e~~~kt~kq~kk~~~fp~rk~~p~  429 (536)
                      |+|+||||||||||||+||+||++++|.||+||+.+||.|+|++.
T Consensus        79 ~~P~dlr~kktra~rr~Lt~~e~~~kt~k~~~k~~~fp~rk~avk  123 (124)
T 4a17_U           79 LKPLDIRVKKTRAIRRKLTKKQREAVLVKTQKKLNNFGLRKFALK  123 (124)
T ss_dssp             SCCTTTSCCSCHHHHHSCCHHHHHCCCHHHHHHHHHTCCCCCCCC
T ss_pred             CCCcccCchHHHHHHHHcCHHHHhhhhHHHHHHHHhCCchheeec
Confidence            999999999999999999999999999999999999999999875
>3u5e_h 60S ribosomal protein L35-A, 60S ribosomal protein L33-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 1s1i_X 2wwa_N 2ww9_N 3izc_c 3izs_c 2wwb_N 3o5h_c 3o58_c 3u5i_h 4b6a_h Back     alignment and structure
>2zkr_v 60S ribosomal protein L35; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Back     alignment and structure
>1vq8_V 50S ribosomal protein L29P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: a.2.2.1 PDB: 1vq4_V* 1vq5_V* 1vq6_V* 1vq7_V* 1s72_V* 1vq9_V* 1vqk_V* 1vql_V* 1vqm_V* 1vqn_V* 1vqo_V* 1vqp_V* 1yhq_V* 1yi2_V* 1yij_V* 1yit_V* 1yj9_V* 1yjn_V* 1yjw_V* 2otj_V* ... Back     alignment and structure
>3j21_W 50S ribosomal protein L29P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>3jyw_X 60S ribosomal protein L35; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} Back     alignment and structure
>3v2d_2 50S ribosomal protein L29; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_W 1vsa_W 2j03_2 2jl6_2 2jl8_2 2v47_2 2v49_2 2wdi_2 2wdj_2 2wdl_2 2wdn_2 2wh2_2 2wh4_2 2wrj_2 2wrl_2 2wro_2 2wrr_2 2x9s_2 2x9u_2 2xg0_2 ... Back     alignment and structure
>1r73_A TM1492, 50S ribosomal protein L29; ribosome, structural genomics, PSI, protein structure initiative, joint center for structural genomics; NMR {Thermotoga maritima} SCOP: a.2.2.1 Back     alignment and structure
>2zjr_V 50S ribosomal protein L29; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: a.2.2.1 PDB: 1nwx_W* 1nwy_W* 1sm1_W* 1xbp_W* 2aar_W 2d3o_W 2zjp_V* 2zjq_V 1nkw_W 3cf5_V* 3dll_V* 3pio_V* 3pip_V* 1pnu_W 1pny_W 1vor_Y 1vou_Y 1vow_Y 1voy_Y 1vp0_Y Back     alignment and structure
>3r8s_Y 50S ribosomal protein L29; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_W 1p86_W 1vs8_X 1vs6_X 2aw4_X 2awb_X 1vt2_Y 2i2v_Y 2j28_X 2i2t_Y* 2qao_X* 2qba_X* 2qbc_X* 2qbe_X 2qbg_X 2qbi_X* 2qbk_X* 2qov_X 2qox_X 2qoz_X* ... Back     alignment and structure
>3bbo_Z Ribosomal protein L29; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 536
d1vqov165 a.2.2.1 (V:1-65) Ribosomal protein L29 (L29p) {Arc 2e-16
d2zjrv166 a.2.2.1 (V:1-66) Ribosomal protein L29 (L29p) {Dei 1e-14
d2gycw160 a.2.2.1 (W:1-60) Ribosomal protein L29 (L29p) {Esc 1e-13
d1r73a_66 a.2.2.1 (A:) Ribosomal protein L29 (L29p) {Thermot 2e-13
d2j012151 a.2.2.1 (2:12-62) Ribosomal protein L29 (L29p) {Th 4e-09
>d1vqov1 a.2.2.1 (V:1-65) Ribosomal protein L29 (L29p) {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 65 Back     information, alignment and structure

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Ribosomal protein L29 (L29p)
family: Ribosomal protein L29 (L29p)
domain: Ribosomal protein L29 (L29p)
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score = 71.5 bits (176), Expect = 2e-16
 Identities = 20/61 (32%), Positives = 33/61 (54%)

Query: 309 VKCSELRTKDKKELLKQLEELKTELANLRVAKVTGGAASKLSKIRVVRKAILRVYIVMHQ 368
           +   E+R     E   +L++LKTEL N R  +  GGA     +I+ +RKAI R+  +  +
Sbjct: 3   LHVQEIRDMTPAEREAELDDLKTELLNARAVQAAGGAPENPGRIKELRKAIARIKTIQGE 62

Query: 369 K 369
           +
Sbjct: 63  E 63
>d2zjrv1 a.2.2.1 (V:1-66) Ribosomal protein L29 (L29p) {Deinococcus radiodurans [TaxId: 1299]} Length = 66 Back     information, alignment and structure
>d2gycw1 a.2.2.1 (W:1-60) Ribosomal protein L29 (L29p) {Escherichia coli [TaxId: 562]} Length = 60 Back     information, alignment and structure
>d1r73a_ a.2.2.1 (A:) Ribosomal protein L29 (L29p) {Thermotoga maritima [TaxId: 2336]} Length = 66 Back     information, alignment and structure
>d2j0121 a.2.2.1 (2:12-62) Ribosomal protein L29 (L29p) {Thermus thermophilus [TaxId: 274]} Length = 51 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query536
d2zjrv166 Ribosomal protein L29 (L29p) {Deinococcus radiodur 99.76
d1vqov165 Ribosomal protein L29 (L29p) {Archaeon Haloarcula 99.75
d1r73a_66 Ribosomal protein L29 (L29p) {Thermotoga maritima 99.74
d2gycw160 Ribosomal protein L29 (L29p) {Escherichia coli [Ta 99.74
d2j012151 Ribosomal protein L29 (L29p) {Thermus thermophilus 99.42
d2daya1115 E3 ubiquitin-protein ligase RNF25 {Human (Homo sap 87.32
d1ukxa_137 EIF2-alpha kinase 4 (GCN2-like protein) {Mouse (Mu 84.18
>d2zjrv1 a.2.2.1 (V:1-66) Ribosomal protein L29 (L29p) {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Ribosomal protein L29 (L29p)
family: Ribosomal protein L29 (L29p)
domain: Ribosomal protein L29 (L29p)
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.76  E-value=2.2e-19  Score=143.39  Aligned_cols=63  Identities=22%  Similarity=0.404  Sum_probs=60.9

Q ss_pred             ccchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHhhhHHHHHHHHhHHHHH
Q psy8363         309 VKCSELRTKDKKELLKQLEELKTELANLRVAKVTGGAASKLSKIRVVRKAILRVYIVMHQKQKE  372 (536)
Q Consensus       309 mKa~ELR~kS~eEL~kqL~eLK~EL~~LR~qkvtG~al~k~skIr~vRK~IARVlTVlnqkqr~  372 (536)
                      ||++|||++|.+||.++|.+|++|||+|||++++|+ ++|+|+|+.+||+||||+||++|++++
T Consensus         1 MK~~elr~~s~~eL~~~l~~lk~elf~LRfq~~tgq-l~n~~~ik~~Rk~IARi~Tvl~er~~~   63 (66)
T d2zjrv1           1 MKPSEMRNLQATDFAKEIDARKKELMELRFQAAAGQ-LAQPHRVRQLRREVAQLNTVKAELARK   63 (66)
T ss_dssp             CCSTTTTTSCHHHHHHHHHTHHHHHHHHHHHHHHSC-CCCHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             CCHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHCC-CcchHHHHHHHHHHHHHHHHHHHHHHh
Confidence            799999999999999999999999999999999999 899999999999999999999998753
>d1vqov1 a.2.2.1 (V:1-65) Ribosomal protein L29 (L29p) {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
>d1r73a_ a.2.2.1 (A:) Ribosomal protein L29 (L29p) {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2gycw1 a.2.2.1 (W:1-60) Ribosomal protein L29 (L29p) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2j0121 a.2.2.1 (2:12-62) Ribosomal protein L29 (L29p) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2daya1 d.20.1.3 (A:8-122) E3 ubiquitin-protein ligase RNF25 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ukxa_ d.20.1.3 (A:) EIF2-alpha kinase 4 (GCN2-like protein) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure