Psyllid ID: psy8393

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------10
Protein Sequence
MNCLIIGLGQTQKGVVIIQKSYALKQMMNFNEVQSKLSSSEPVWKILIFDRCGQDIISPVLSKNDLRELGVTLFLYSAEVLDEEYSALCLMCLRMNCY
Secondary Structure (PSIPRED)
ccEEEEEcccccHHHHHHHHHHHHHHHHcccccccccccccccEEEEEEEcccccEEEccccHHHHHHccEEEEEEcccHHHHccccEEEEEEEcccc
Secondary Structure Prediction (SSPRO)
cccEEEccccccccHHHHHHHHHHHHHHHcccccccccccccEEEEEEEccccccEEcHHccHHHHHHcccEEEEEEccccccHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mncliiglgqtqKGVVIIQKSYALKQMMNFNEVqsklsssepvWKILIFdrcgqdiispvlskndlrELGVTLFLYSAEVLDEEYSALCLMCLRMNCY
Flexible Loop (DISEMBL)
mncliiglgqtqkgVVIIQKSYALKQMMNFNEVQSKLSSSEPVWKILIFDRCGQDIISpvlskndlrELGVTLFLYSAEVLDEEYSALCLMCLRMNCY
Low Complexity Region (SEG)
MNCLIIGLGQTQKGVVIIQKSYALKQMMNFNEVQSKLSSSEPVWKILIFDRCGQDIISPVLSKNDLRELGVTLFLYSAEVLDEEYSALCLMCLRMNCY
Disordered region (IsUnstruct)
**CLIIGLGQTQKGVVIIQKSYALKQMMNFNEVQSKLSSSEPVWKILIFDRCGQDIISPVLSKNDLRELGVTLFLYSAEVLDEEYSALCLMCLRMNC*
Disordered Region (DISOPRED)
***********************LKQM*****************KILIFDRCGQDIISPVLSKNDLRELGVTLFLYSAEVLDEEYSALCLMCLRMNCY
Disordered Region (DISEMBL)
MNCLIIGLGQTQKGVVIIQKSYALKQMMNFNEVQSKLSSSEPVWKILIFDRCGQDIISPVLSKNDLRELGVTLFLYSAEVLDEEYSALCLMCLRMNCY
Disordered Region (DISPRO)
*NCLIIGLGQTQKGVVIIQKSYALKQMMNFNEVQSKLSSSEPVWKILIFDRCGQDIISPVLSKNDLRELGVTLFLYSAEVLDEEYSALCLMCLRMNCY
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MNCLIIGLGQTQKGVVIIQKSYALKQMMNFNEVQSKLSSSEPVWKILIFDRCGQDIISPVLSKNDLRELGVTLFLYSAEVLDEEYSALCLMCLRMNCY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	98	2.2.26 [Sep-21-2011]
Q24179	657	Protein sly1 homolog OS=D	yes	N/A	0.520	0.077	0.666	4e-14
Q8BRF7	639	Sec1 family domain-contai	yes	N/A	0.581	0.089	0.578	1e-13
Q8WVM8	642	Sec1 family domain-contai	yes	N/A	0.581	0.088	0.578	2e-13
Q62991	637	Sec1 family domain-contai	yes	N/A	0.581	0.089	0.578	3e-13
O18637	656	Protein sly1 homolog OS=D	N/A	N/A	0.520	0.077	0.627	8e-13
O74534	639	Protein sly1 OS=Schizosac	yes	N/A	0.540	0.082	0.406	2e-06
Q9SL48	627	SEC1 family transport pro	yes	N/A	0.653	0.102	0.383	2e-05
Q54IJ1	673	Sec1 family domain-contai	yes	N/A	0.397	0.057	0.512	0.0002

>sp|Q24179|SLY1_DROME Protein sly1 homolog OS=Drosophila melanogaster GN=Slh PE=2 SV=3

 Score = 76.6 bits (187), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 34/51 (66%), Positives = 42/51 (82%)

Query: 23 ALKQMMNFNEVQSKLSSSEPVWKILIFDRCGQDIISPVLSKNDLRELGVTL 73
          A+KQM+N N  Q K  ++EPVWKILI+DR GQDIISP++S  +LRELGVTL
Sbjct: 11 AIKQMLNLNSQQPKALAAEPVWKILIYDRVGQDIISPIISIKELRELGVTL 61

Non-vital for development.
Drosophila melanogaster (taxid: 7227)

>sp|Q8BRF7|SCFD1_MOUSE Sec1 family domain-containing protein 1 OS=Mus musculus GN=Scfd1 PE=2 SV=1

 Score = 75.1 bits (183), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/57 (57%), Positives = 46/57 (80%)

Query: 19 QKSYALKQMMNFNEVQSKLSSSEPVWKILIFDRCGQDIISPVLSKNDLRELGVTLFL 75
          +++ ALK+M+NFN    K S+ EPVWK+LI+DR GQDIISP+LS  +LR++G+TL L
Sbjct: 15 RQTVALKRMLNFNVPHVKNSTGEPVWKVLIYDRFGQDIISPLLSVKELRDMGITLHL 71

Plays a role in SNARE-pin assembly and Golgi-to-ER retrograde transport via its interaction with COG4. Involved in vesicular transport between the endoplasmic reticulum and the Golgi.

Mus musculus (taxid: 10090)

>sp|Q8WVM8|SCFD1_HUMAN Sec1 family domain-containing protein 1 OS=Homo sapiens GN=SCFD1 PE=1 SV=4

 Score = 74.7 bits (182), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/57 (57%), Positives = 46/57 (80%)

Query: 19 QKSYALKQMMNFNEVQSKLSSSEPVWKILIFDRCGQDIISPVLSKNDLRELGVTLFL 75
          +++ ALK+M+NFN    K S+ EPVWK+LI+DR GQDIISP+LS  +LR++G+TL L
Sbjct: 18 RQTVALKRMLNFNVPHIKNSTGEPVWKVLIYDRFGQDIISPLLSVKELRDMGITLHL 74

Plays a role in SNARE-pin assembly and Golgi-to-ER retrograde transport via its interaction with COG4. Involved in vesicular transport between the endoplasmic reticulum and the Golgi.

Homo sapiens (taxid: 9606)

>sp|Q62991|SCFD1_RAT Sec1 family domain-containing protein 1 OS=Rattus norvegicus GN=Scfd1 PE=1 SV=1

 Score = 73.9 bits (180), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 33/57 (57%), Positives = 45/57 (78%)

Query: 19 QKSYALKQMMNFNEVQSKLSSSEPVWKILIFDRCGQDIISPVLSKNDLRELGVTLFL 75
          +++ ALK+M+NFN    K S  EPVWK+LI+DR GQDIISP+LS  +LR++G+TL L
Sbjct: 13 RQTVALKRMLNFNVPHVKNSPGEPVWKVLIYDRFGQDIISPLLSVKELRDMGITLHL 69

Plays a role in SNARE-pin assembly and Golgi-to-ER retrograde transport via its interaction with COG4. Involved in vesicular transport between the endoplasmic reticulum and the Golgi.

Rattus norvegicus (taxid: 10116)

>sp|O18637|SLY1_DROVI Protein sly1 homolog OS=Drosophila virilis GN=Slh PE=3 SV=1

 Score = 72.4 bits (176), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 32/51 (62%), Positives = 41/51 (80%)

Query: 23 ALKQMMNFNEVQSKLSSSEPVWKILIFDRCGQDIISPVLSKNDLRELGVTL 73
          A+KQM+N N  Q K  +++ VWKILI+DR GQDIISP++S  +LRELGVTL
Sbjct: 11 AIKQMLNLNSQQPKAMAADAVWKILIYDRVGQDIISPIISIKELRELGVTL 61

Non-vital for development.

Drosophila virilis (taxid: 7244)

>sp|O74534|SLY1_SCHPO Protein sly1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sly1 PE=3 SV=1

 Score = 50.8 bits (120), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 40/59 (67%), Gaps = 6/59 (10%)

Query: 23 ALKQMMNFNEVQSKLSSSE------PVWKILIFDRCGQDIISPVLSKNDLRELGVTLFL 75
          +L++++N N+  ++L SS       P+WK+LIFD+ G + IS VL  +DLR+ GVT+ +
Sbjct: 19 SLEKLLNLNQDVNELESSPQHASNFPIWKVLIFDKAGSETISSVLRISDLRKHGVTVHM 77

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q9SL48|SLY1_ARATH SEC1 family transport protein SLY1 OS=Arabidopsis thaliana GN=SLY1 PE=1 SV=1

 Score = 47.8 bits (112), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/73 (38%), Positives = 43/73 (58%), Gaps = 9/73 (12%)

Query: 4  LIIGLGQTQKGVVIIQKSYALKQMMNFNE-VQSKLSSSEPVWKILIFDRCGQDIISPVLS 62
          + + L Q Q   VI        +M+N N+ +    +++E V+KILI+DR  Q+I+SP+  
Sbjct: 1  MALNLRQKQTECVI--------RMLNLNQPLNPSGTANEEVYKILIYDRFCQNILSPLTH 52

Query: 63 KNDLRELGVTLFL 75
            DLR+ GVTLF 
Sbjct: 53 VKDLRKHGVTLFF 65

May be involved in the early secretory pathway.

Arabidopsis thaliana (taxid: 3702)

>sp|Q54IJ1|SCFD1_DICDI Sec1 family domain-containing protein 1 homolog OS=Dictyostelium discoideum GN=scfd1 PE=3 SV=2

 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/39 (51%), Positives = 28/39 (71%)

Query: 37 LSSSEPVWKILIFDRCGQDIISPVLSKNDLRELGVTLFL 75
          +S  + VWK+LIFD    +II+P+L+K  LR  GVTL+L
Sbjct: 60 ISGWQEVWKVLIFDTHCSNIIAPILTKGALRNQGVTLYL 98

Involved in vesicular transport between the endoplasmic reticulum and the Golgi.

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	98
427789055	628	Putative vesicle trafficking protein sly	0.540	0.084	0.660	5e-14
346468743	628	hypothetical protein [Amblyomma maculatu	0.540	0.084	0.660	5e-14
442746785	628	Putative vesicle trafficking protein sly	0.540	0.084	0.622	2e-13
241730222	628	conserved hypothetical protein [Ixodes s	0.540	0.084	0.622	2e-13
431917821	661	Sec1 family domain-containing protein 1	0.581	0.086	0.596	3e-13
170037139	639	vesicle protein sorting-associated [Cule	0.683	0.104	0.537	4e-13
91080709	627	PREDICTED: similar to vesicle protein so	0.540	0.084	0.660	5e-13
195114288	639	GI16994 [Drosophila mojavensis] gi|19391	0.520	0.079	0.666	8e-13
195161348	638	GL26465 [Drosophila persimilis] gi|19847	0.520	0.079	0.686	1e-12
194771026	639	GF20604 [Drosophila ananassae] gi|190615	0.520	0.079	0.666	1e-12

>gi|427789055|gb|JAA59979.1| Putative vesicle trafficking protein sly1 sec1 family [Rhipicephalus pulchellus]

 Score = 81.6 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 35/53 (66%), Positives = 45/53 (84%)

Query: 23 ALKQMMNFNEVQSKLSSSEPVWKILIFDRCGQDIISPVLSKNDLRELGVTLFL 75
          ALKQM+NFN  Q K S SEPVWK+L++DRCGQDIISP+LS  +LR++G+TL +
Sbjct: 12 ALKQMLNFNVPQPKGSFSEPVWKLLVYDRCGQDIISPLLSVKELRDMGITLHM 64

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|346468743|gb|AEO34216.1| hypothetical protein [Amblyomma maculatum]

 Score = 81.6 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 35/53 (66%), Positives = 45/53 (84%)

Query: 23 ALKQMMNFNEVQSKLSSSEPVWKILIFDRCGQDIISPVLSKNDLRELGVTLFL 75
          ALKQM+NFN  Q K S SEPVWK+L++DRCGQDIISP+LS  +LR++G+TL +
Sbjct: 12 ALKQMLNFNVPQPKGSFSEPVWKLLVYDRCGQDIISPLLSVKELRDMGITLHM 64

Source: Amblyomma maculatum

Species: Amblyomma maculatum

Genus: Amblyomma

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442746785|gb|JAA65552.1| Putative vesicle trafficking protein sly1 sec1 family [Ixodes ricinus]

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/53 (62%), Positives = 46/53 (86%)

Query: 23 ALKQMMNFNEVQSKLSSSEPVWKILIFDRCGQDIISPVLSKNDLRELGVTLFL 75
          ALKQM+NFN  Q+K + +EPVWK+L++DRCGQDIISP+LS  +LR++G+TL +
Sbjct: 12 ALKQMLNFNVPQTKGAFAEPVWKLLVYDRCGQDIISPLLSVKELRDMGMTLHM 64

Source: Ixodes ricinus

Species: Ixodes ricinus

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|241730222|ref|XP_002413824.1| conserved hypothetical protein [Ixodes scapularis] gi|215507640|gb|EEC17132.1| conserved hypothetical protein [Ixodes scapularis]

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/53 (62%), Positives = 46/53 (86%)

Query: 23 ALKQMMNFNEVQSKLSSSEPVWKILIFDRCGQDIISPVLSKNDLRELGVTLFL 75
          ALKQM+NFN  Q+K + +EPVWK+L++DRCGQDIISP+LS  +LR++G+TL +
Sbjct: 12 ALKQMLNFNVPQTKGAFAEPVWKLLVYDRCGQDIISPLLSVKELRDMGMTLHM 64

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|431917821|gb|ELK17055.1| Sec1 family domain-containing protein 1 [Pteropus alecto]

 Score = 79.3 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/57 (59%), Positives = 47/57 (82%)

Query: 19 QKSYALKQMMNFNEVQSKLSSSEPVWKILIFDRCGQDIISPVLSKNDLRELGVTLFL 75
          +++ ALK+M+NFNE   K S+ EPVWK+LI+DR GQDIISP+LS  +LR++G+TL L
Sbjct: 12 RQTVALKRMLNFNETHVKNSTGEPVWKVLIYDRFGQDIISPLLSVKELRDMGITLHL 68

Source: Pteropus alecto

Species: Pteropus alecto

Genus: Pteropus

Family: Pteropodidae

Order: Chiroptera

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|170037139|ref|XP_001846417.1| vesicle protein sorting-associated [Culex quinquefasciatus] gi|167880171|gb|EDS43554.1| vesicle protein sorting-associated [Culex quinquefasciatus]

 Score = 78.6 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 36/67 (53%), Positives = 51/67 (76%)

Query: 9  GQTQKGVVIIQKSYALKQMMNFNEVQSKLSSSEPVWKILIFDRCGQDIISPVLSKNDLRE 68
          G ++K +   +   A+KQM+N N+ Q+K  ++EPVWKILI+DR GQDIISP++S  +LRE
Sbjct: 3  GDSKKKINKNKTRNAIKQMLNLNQPQTKALAAEPVWKILIYDRIGQDIISPLISIRELRE 62

Query: 69 LGVTLFL 75
          LGVTL +
Sbjct: 63 LGVTLHI 69

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91080709|ref|XP_975318.1| PREDICTED: similar to vesicle protein sorting-associated [Tribolium castaneum] gi|270005472|gb|EFA01920.1| hypothetical protein TcasGA2_TC007530 [Tribolium castaneum]

 Score = 78.6 bits (192), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 35/53 (66%), Positives = 45/53 (84%)

Query: 23 ALKQMMNFNEVQSKLSSSEPVWKILIFDRCGQDIISPVLSKNDLRELGVTLFL 75
          ALKQM+N N+ QSKLS+SEP WK+L++D  GQDIIS ++S  +LRELGVTLF+
Sbjct: 11 ALKQMLNLNQPQSKLSASEPKWKVLVYDNVGQDIISVLISVKELRELGVTLFV 63

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195114288|ref|XP_002001699.1| GI16994 [Drosophila mojavensis] gi|193912274|gb|EDW11141.1| GI16994 [Drosophila mojavensis]

 Score = 77.8 bits (190), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 34/51 (66%), Positives = 43/51 (84%)

Query: 23 ALKQMMNFNEVQSKLSSSEPVWKILIFDRCGQDIISPVLSKNDLRELGVTL 73
          A+KQM+N N  Q K+ ++EPVWKILI+DR GQDIISP++S  +LRELGVTL
Sbjct: 11 AIKQMLNLNSQQPKVLAAEPVWKILIYDRVGQDIISPIISIKELRELGVTL 61

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195161348|ref|XP_002021530.1| GL26465 [Drosophila persimilis] gi|198472551|ref|XP_002133069.1| GA28872 [Drosophila pseudoobscura pseudoobscura] gi|194103330|gb|EDW25373.1| GL26465 [Drosophila persimilis] gi|198139063|gb|EDY70471.1| GA28872 [Drosophila pseudoobscura pseudoobscura]

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/51 (68%), Positives = 42/51 (82%)

Query: 23 ALKQMMNFNEVQSKLSSSEPVWKILIFDRCGQDIISPVLSKNDLRELGVTL 73
          A+KQM+N N  Q K  ++EPVWKILI+DR GQDIISPV+S  +LRELGVTL
Sbjct: 11 AIKQMLNLNSQQPKALAAEPVWKILIYDRVGQDIISPVISIKELRELGVTL 61

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194771026|ref|XP_001967580.1| GF20604 [Drosophila ananassae] gi|190615081|gb|EDV30605.1| GF20604 [Drosophila ananassae]

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/51 (66%), Positives = 42/51 (82%)

Query: 23 ALKQMMNFNEVQSKLSSSEPVWKILIFDRCGQDIISPVLSKNDLRELGVTL 73
          A+KQM+N N  Q K  ++EPVWKILI+DR GQDIISP++S  +LRELGVTL
Sbjct: 11 AIKQMLNLNSQQPKALAAEPVWKILIYDRVGQDIISPIISIKELRELGVTL 61

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	98
UNIPROTKB|G3V5F3	121	SCFD1 "Sec1 family domain-cont	0.632	0.512	0.532	6.2e-14
UNIPROTKB|G3V4I1	75	SCFD1 "Sec1 family domain-cont	0.591	0.773	0.568	1e-13
UNIPROTKB|J3KNG4	163	SCFD1 "Sec1 family domain-cont	0.581	0.349	0.578	1.6e-13
UNIPROTKB|H0YJS6	102	SCFD1 "Sec1 family domain-cont	0.540	0.519	0.622	2.7e-13
FB|FBgn0264978	657	Slh "SLY-1 homologous" [Drosop	0.520	0.077	0.666	9.9e-13
UNIPROTKB|F1SHF4	550	SCFD1 "Uncharacterized protein	0.581	0.103	0.578	1.5e-12
UNIPROTKB|F1PLS0	635	SCFD1 "Uncharacterized protein	0.581	0.089	0.578	2e-12
MGI|MGI:1924233	639	Scfd1 "Sec1 family domain cont	0.581	0.089	0.578	2e-12
UNIPROTKB|E1BG76	641	SCFD1 "Uncharacterized protein	0.581	0.088	0.578	2e-12
UNIPROTKB|Q8WVM8	642	SCFD1 "Sec1 family domain-cont	0.581	0.088	0.578	2e-12

UNIPROTKB|G3V5F3 SCFD1 "Sec1 family domain-containing protein 1" [Homo sapiens (taxid:9606)]

 Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
 Identities = 33/62 (53%), Positives = 48/62 (77%)

Query:    19 QKSYALKQMMNFNEVQSKLSSSEPVWKILIFDRCGQDIISPVLSKNDLRELGVTLFLYSA 78
             +++ ALK+M+NFN    K S+ EPVWK+LI+DR GQDIISP+LS  +LR++G+TL L+  
Sbjct:    18 RQTVALKRMLNFNVPHIKNSTGEPVWKVLIYDRFGQDIISPLLSVKELRDMGITLHLFLT 77

Query:    79 EV 80
              +
Sbjct:    78 NI 79

GO:0006904 "vesicle docking involved in exocytosis" evidence=IEA

UNIPROTKB|G3V4I1 SCFD1 "Sec1 family domain-containing protein 1" [Homo sapiens (taxid:9606)]

 Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 33/58 (56%), Positives = 47/58 (81%)

Query:    19 QKSYALKQMMNFNEVQSKLSSSEPVWKILIFDRCGQDIISPVLSKNDLRELGVTLFLY 76
             +++ ALK+M+NFN    K S+ EPVWK+LI+DR GQDIISP+LS  +LR++G+TL L+
Sbjct:    18 RQTVALKRMLNFNVPHIKNSTGEPVWKVLIYDRFGQDIISPLLSVKELRDMGITLHLH 75

GO:0006904 "vesicle docking involved in exocytosis" evidence=IEA

UNIPROTKB|J3KNG4 SCFD1 "Sec1 family domain-containing protein 1" [Homo sapiens (taxid:9606)]

 Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
 Identities = 33/57 (57%), Positives = 46/57 (80%)

Query:    19 QKSYALKQMMNFNEVQSKLSSSEPVWKILIFDRCGQDIISPVLSKNDLRELGVTLFL 75
             +++ ALK+M+NFN    K S+ EPVWK+LI+DR GQDIISP+LS  +LR++G+TL L
Sbjct:    18 RQTVALKRMLNFNVPHIKNSTGEPVWKVLIYDRFGQDIISPLLSVKELRDMGITLHL 74

GO:0006904 "vesicle docking involved in exocytosis" evidence=IEA

UNIPROTKB|H0YJS6 SCFD1 "Sec1 family domain-containing protein 1" [Homo sapiens (taxid:9606)]

 Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
 Identities = 33/53 (62%), Positives = 43/53 (81%)

Query:    23 ALKQMMNFNEVQSKLSSSEPVWKILIFDRCGQDIISPVLSKNDLRELGVTLFL 75
             ALK+M+NFN    K S+ EPVWK+LI+DR GQDIISP+LS  +LR++G+TL L
Sbjct:     2 ALKRMLNFNVPHIKNSTGEPVWKVLIYDRFGQDIISPLLSVKELRDMGITLHL 54

GO:0006904 "vesicle docking involved in exocytosis" evidence=IEA

FB|FBgn0264978 Slh "SLY-1 homologous" [Drosophila melanogaster (taxid:7227)]

 Score = 179 (68.1 bits), Expect = 9.9e-13, P = 9.9e-13
 Identities = 34/51 (66%), Positives = 42/51 (82%)

Query:    23 ALKQMMNFNEVQSKLSSSEPVWKILIFDRCGQDIISPVLSKNDLRELGVTL 73
             A+KQM+N N  Q K  ++EPVWKILI+DR GQDIISP++S  +LRELGVTL
Sbjct:    11 AIKQMLNLNSQQPKALAAEPVWKILIYDRVGQDIISPIISIKELRELGVTL 61

GO:0006605 "protein targeting" evidence=ISS

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0000149 "SNARE binding" evidence=ISS

GO:0016192 "vesicle-mediated transport" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0006904 "vesicle docking involved in exocytosis" evidence=IEA

GO:0006911 "phagocytosis, engulfment" evidence=IMP

GO:0048190 "wing disc dorsal/ventral pattern formation" evidence=IGI

GO:0000902 "cell morphogenesis" evidence=IMP

GO:0022008 "neurogenesis" evidence=IMP

GO:0031201 "SNARE complex" evidence=IDA

UNIPROTKB|F1SHF4 SCFD1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 176 (67.0 bits), Expect = 1.5e-12, P = 1.5e-12
 Identities = 33/57 (57%), Positives = 46/57 (80%)

Query:    19 QKSYALKQMMNFNEVQSKLSSSEPVWKILIFDRCGQDIISPVLSKNDLRELGVTLFL 75
             +++ ALK+M+NFN    K S+ EPVWK+LI+DR GQDIISP+LS  +LR++G+TL L
Sbjct:    17 RQTVALKRMLNFNVPHVKNSAGEPVWKVLIYDRFGQDIISPLLSVKELRDMGITLHL 73

GO:0009636 "response to toxic substance" evidence=IEA

GO:0005801 "cis-Golgi network" evidence=IEA

GO:0006904 "vesicle docking involved in exocytosis" evidence=IEA

UNIPROTKB|F1PLS0 SCFD1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 176 (67.0 bits), Expect = 2.0e-12, P = 2.0e-12
 Identities = 33/57 (57%), Positives = 46/57 (80%)

Query:    19 QKSYALKQMMNFNEVQSKLSSSEPVWKILIFDRCGQDIISPVLSKNDLRELGVTLFL 75
             +++ ALK+M+NFN    K S+ EPVWK+LI+DR GQDIISP+LS  +LR++G+TL L
Sbjct:    11 RQTVALKRMLNFNVPHVKNSTGEPVWKVLIYDRFGQDIISPLLSVKELRDMGITLHL 67

GO:0006904 "vesicle docking involved in exocytosis" evidence=IEA

MGI|MGI:1924233 Scfd1 "Sec1 family domain containing 1" [Mus musculus (taxid:10090)]

 Score = 176 (67.0 bits), Expect = 2.0e-12, P = 2.0e-12
 Identities = 33/57 (57%), Positives = 46/57 (80%)

Query:    19 QKSYALKQMMNFNEVQSKLSSSEPVWKILIFDRCGQDIISPVLSKNDLRELGVTLFL 75
             +++ ALK+M+NFN    K S+ EPVWK+LI+DR GQDIISP+LS  +LR++G+TL L
Sbjct:    15 RQTVALKRMLNFNVPHVKNSTGEPVWKVLIYDRFGQDIISPLLSVKELRDMGITLHL 71

GO:0005737 "cytoplasm" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005798 "Golgi-associated vesicle" evidence=ISO

GO:0005801 "cis-Golgi network" evidence=ISO

GO:0005886 "plasma membrane" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=ISO

GO:0006892 "post-Golgi vesicle-mediated transport" evidence=ISO

GO:0006904 "vesicle docking involved in exocytosis" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0017119 "Golgi transport complex" evidence=ISO

GO:0019905 "syntaxin binding" evidence=ISO

GO:0047485 "protein N-terminus binding" evidence=ISO

GO:0060628 "regulation of ER to Golgi vesicle-mediated transport" evidence=ISO

UNIPROTKB|E1BG76 SCFD1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 176 (67.0 bits), Expect = 2.0e-12, P = 2.0e-12
 Identities = 33/57 (57%), Positives = 46/57 (80%)

Query:    19 QKSYALKQMMNFNEVQSKLSSSEPVWKILIFDRCGQDIISPVLSKNDLRELGVTLFL 75
             +++ ALK+M+NFN    K S+ EPVWK+LI+DR GQDIISP+LS  +LR++G+TL L
Sbjct:    17 RQTVALKRMLNFNVPHVKNSTGEPVWKVLIYDRFGQDIISPLLSVKELRDMGITLHL 73

GO:0009636 "response to toxic substance" evidence=IEA

GO:0005801 "cis-Golgi network" evidence=IEA

GO:0006904 "vesicle docking involved in exocytosis" evidence=IEA

UNIPROTKB|Q8WVM8 SCFD1 "Sec1 family domain-containing protein 1" [Homo sapiens (taxid:9606)]

 Score = 176 (67.0 bits), Expect = 2.0e-12, P = 2.0e-12
 Identities = 33/57 (57%), Positives = 46/57 (80%)

Query:    19 QKSYALKQMMNFNEVQSKLSSSEPVWKILIFDRCGQDIISPVLSKNDLRELGVTLFL 75
             +++ ALK+M+NFN    K S+ EPVWK+LI+DR GQDIISP+LS  +LR++G+TL L
Sbjct:    18 RQTVALKRMLNFNVPHIKNSTGEPVWKVLIYDRFGQDIISPLLSVKELRDMGITLHL 74

GO:0006904 "vesicle docking involved in exocytosis" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0001666 "response to hypoxia" evidence=IEA

GO:0047485 "protein N-terminus binding" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0032580 "Golgi cisterna membrane" evidence=IEA

GO:0006892 "post-Golgi vesicle-mediated transport" evidence=ISS

GO:0019905 "syntaxin binding" evidence=ISS

GO:0017119 "Golgi transport complex" evidence=ISS

GO:0060628 "regulation of ER to Golgi vesicle-mediated transport" evidence=ISS

GO:0005798 "Golgi-associated vesicle" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

GO:0005801 "cis-Golgi network" evidence=IDA

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=ISS

GO:0009636 "response to toxic substance" evidence=IEP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8WVM8	SCFD1_HUMAN	No assigned EC number	0.5789	0.5816	0.0887	yes	N/A
Q62991	SCFD1_RAT	No assigned EC number	0.5789	0.5816	0.0894	yes	N/A
Q24179	SLY1_DROME	No assigned EC number	0.6666	0.5204	0.0776	yes	N/A
Q8BRF7	SCFD1_MOUSE	No assigned EC number	0.5789	0.5816	0.0892	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	98
pfam00995	554	pfam00995, Sec1, Sec1 family	4e-08
COG5158	582	COG5158, SEC1, Proteins involved in synaptic trans	6e-05

>gnl|CDD|216231 pfam00995, Sec1, Sec1 family

 Score = 48.8 bits (117), Expect = 4e-08
 Identities = 15/32 (46%), Positives = 21/32 (65%)

Query: 44 WKILIFDRCGQDIISPVLSKNDLRELGVTLFL 75
          WK+L+ D+    I+S VL+ +DL E GVTL  
Sbjct: 1  WKVLVLDKETTKILSSVLTVSDLLEHGVTLVE 32

Length = 554

>gnl|CDD|227487 COG5158, SEC1, Proteins involved in synaptic transmission and general secretion, Sec1 family [Intracellular trafficking and secretion]

 Score = 39.7 bits (93), Expect = 6e-05
 Identities = 13/47 (27%), Positives = 29/47 (61%), Gaps = 2/47 (4%)

Query: 31 NEVQSKLSSSEP--VWKILIFDRCGQDIISPVLSKNDLRELGVTLFL 75
          N++  ++   +P  +WK+L+ D+    I+S +++ ++L E G+TL  
Sbjct: 10 NKILDEIFLVQPANIWKVLLLDKDTTSILSSLITTSELLEHGITLVD 56

Length = 582

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	98
KOG1301|consensus	621		99.95
COG5158	582	SEC1 Proteins involved in synaptic transmission an	99.36
PF00995	564	Sec1: Sec1 family; InterPro: IPR001619 Sec1-like m	98.96
KOG1300|consensus	593		98.56
KOG1299|consensus	549		87.66

>KOG1301|consensus

Probab=99.95  E-value=2.3e-28  Score=208.50  Aligned_cols=77  Identities=43%  Similarity=0.631  Sum_probs=70.6

Q ss_pred             cchHHHHHHHHHHHhhcCCCcCCcCCC-CCCceEEEEEecCCCceeecccchhHHhhcCceEEEeccccchhhhH--HHH
Q psy8393          13 KGVVIIQKSYALKQMMNFNEVQSKLSS-SEPVWKILIFDRCGQDIISPVLSKNDLRELGVTLFLYSAEVLDEEYS--ALC   89 (98)
Q Consensus        13 ~~~Lre~Q~~aL~~MLnlN~~~~~~~~-~e~~WKVLI~D~~~qdIISplLrV~DLR~~GVTLHl~L~~~Rep~~~--a~~   89 (98)
                      -.+|||||+.||++|||||+|..++.. .|++|||||||++||+||||+++|+||||+|||+|++|++.|+|+|.  |+|
T Consensus         9 ~~slRe~Qi~al~~mlnLN~~~~~~~~~~epvWKVLI~Dr~gq~iISpll~VkeLRe~GvTlH~li~~dR~Pi~DVPAVY   88 (621)
T KOG1301|consen    9 AASLRERQIVALKKMLNLNKPVNKNGTAAEPVWKVLILDRFGQDIISPLLRVKELREHGITLHLLITSDRDPIPDVPAVY   88 (621)
T ss_pred             hhhHHHHHHHHHHHHHHhcCCccccccccCCceEEEEEecccchhhcccccHHHHHhcCcEEEEeeccccCCCCCCCeEE
Confidence            468999999999999999999777654 49999999999999999999999999999999999999999999874  555

>COG5158 SEC1 Proteins involved in synaptic transmission and general secretion, Sec1 family [Intracellular trafficking and secretion]

Probab=99.36  E-value=4.7e-13  Score=115.22  Aligned_cols=66  Identities=17%  Similarity=0.291  Sum_probs=61.7

Q ss_pred             chHHHHHHHHHHHhhcCCCcCCcCCCCCCceEEEEEecCCCceeecccchhHHhhcCceEEEeccccchhhhH
Q psy8393          14 GVVIIQKSYALKQMMNFNEVQSKLSSSEPVWKILIFDRCGQDIISPVLSKNDLRELGVTLFLYSAEVLDEEYS   86 (98)
Q Consensus        14 ~~Lre~Q~~aL~~MLnlN~~~~~~~~~e~~WKVLI~D~~~qdIISplLrV~DLR~~GVTLHl~L~~~Rep~~~   86 (98)
                      ++|+|.|++.|.++++.++|.+       .|||||+|+.+..|||+++++++|+++|||+|..|++.|+|+++
T Consensus         2 ~dl~e~q~~~i~~~i~~v~~~n-------~~KvLllD~~t~~ils~~~~~s~lle~~I~~~~~i~~~R~~~~~   67 (582)
T COG5158           2 MDLLELQKNKILDEIFLVQPAN-------IWKVLLLDKDTTSILSSLITTSELLEHGITLVDLIENKREPISD   67 (582)
T ss_pred             ccHHHHHHHHHHHHHHhcCCCc-------ceEEEEEecchHHHHHhhcchHHHHhcCceEEEeecCCCCCCCC
Confidence            5899999999999999987743       79999999999999999999999999999999999999999664

>PF00995 Sec1: Sec1 family; InterPro: IPR001619 Sec1-like molecules have been implicated in a variety of eukaryotic vesicle transport processes including neurotransmitter release by exocytosis []

Probab=98.96  E-value=5.3e-11  Score=96.46  Aligned_cols=48  Identities=35%  Similarity=0.497  Sum_probs=39.8

Q ss_pred             eEEEEEecCCCceeecccchhHHhhcCceEEEeccccchhhhH--HHHHH
Q psy8393          44 WKILIFDRCGQDIISPVLSKNDLRELGVTLFLYSAEVLDEEYS--ALCLM   91 (98)
Q Consensus        44 WKVLI~D~~~qdIISplLrV~DLR~~GVTLHl~L~~~Rep~~~--a~~~~   91 (98)
                      |||||+|+.+.+|||++++++||+++|||++..|++.|+|+|+  |+|+.
T Consensus         1 wKvLi~D~~~~~ils~~~~~~~L~~~gV~~i~~l~~~r~~~~~~~~iy~i   50 (564)
T PF00995_consen    1 WKVLILDKSTLKILSSLCSMSDLLEHGVTLIEKLENKREPMPSMDAIYFI   50 (564)
T ss_dssp             -EEEEE-HHHHHHHHCCS-HHHHHTTTEEEEEETTS--S-BTTSEEEEEE
T ss_pred             CEEEEECcccHHHHHhhcCHHHHHHcCCceEeeccchhhcCCCcceEEEE
Confidence            9999999999999999999999999999999999999999998  77754

They regulate vesicle transport by binding to a t-SNARE from the syntaxin family. This process is thought to prevent SNARE complex formation, a protein complex required for membrane fusion. Whereas Sec1 molecules are essential for neurotransmitter release and other secretory events, their interaction with syntaxin molecules seems to represent a negative regulatory step in secretion []. ; GO: 0006904 vesicle docking involved in exocytosis, 0016192 vesicle-mediated transport; PDB: 3C98_A 3PUJ_B 1FVH_A 1FVF_A 1EPU_A 2XHE_A 1MQS_A 2PJX_A 3PUK_A 1Y9J_A.

>KOG1300|consensus

Probab=98.56  E-value=3.7e-08  Score=85.51  Aligned_cols=48  Identities=23%  Similarity=0.327  Sum_probs=45.0

Q ss_pred             CceEEEEEecCCCceeecccchhHHhhcCceEEEeccccchhhhH--HHH
Q psy8393          42 PVWKILIFDRCGQDIISPVLSKNDLRELGVTLFLYSAEVLDEEYS--ALC   89 (98)
Q Consensus        42 ~~WKVLI~D~~~qdIISplLrV~DLR~~GVTLHl~L~~~Rep~~~--a~~   89 (98)
                      ..|||||+|+.+..|+|+.+++.|+++.|||+...|+++|||+||  |+|
T Consensus        22 g~wkVLi~Dk~~~~ilss~~km~~i~~egIt~ve~i~~~ReP~~SmeaIY   71 (593)
T KOG1300|consen   22 GEWKVLVVDKLTMRILSSCCKMSEILEEGITIVEDINKRREPLPSMEAIY   71 (593)
T ss_pred             CeeEEEEecchHHHHHHHHHHHHHHHHcCceeeeeccccCCCCCcceeEE
Confidence            389999999999999999999999999999999999999999984  544

>KOG1299|consensus

Probab=87.66  E-value=0.74  Score=40.51  Aligned_cols=55  Identities=22%  Similarity=0.293  Sum_probs=45.9

Q ss_pred             HHHHHHhhcCCCcCCcCCCCCCceEEEEEecCCCceeecccchhHHhhcCceEEEeccc-cchhh
Q psy8393          21 SYALKQMMNFNEVQSKLSSSEPVWKILIFDRCGQDIISPVLSKNDLRELGVTLFLYSAE-VLDEE   84 (98)
Q Consensus        21 ~~aL~~MLnlN~~~~~~~~~e~~WKVLI~D~~~qdIISplLrV~DLR~~GVTLHl~L~~-~Rep~   84 (98)
                      +.-+.+|...         .++.-|||.+|+.|+-|+|-++.=++|.+.-|-|...|++ .||.+
T Consensus         8 k~yi~~m~~~---------~g~~mKvLLlD~eTt~ivS~~~tQSelLq~evyLferI~n~~rE~~   63 (549)
T KOG1299|consen    8 KKYIEKMIQE---------SGPGMKVLLLDKETTPIVSMCITQSELLQKEVYLFERIDNKSRERI   63 (549)
T ss_pred             HHHHHHHHHh---------cCCCceEEEEcCCCceehhhhcchHHHhhhheehhhhhcchhhHHh
Confidence            4456677662         2356899999999999999999999999999999999999 56554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	98
1y9j_A	159	Solution Structure Of The Rat Sly1 N-Terminal Domai		1e-14

>pdb|1Y9J|A Chain A, Solution Structure Of The Rat Sly1 N-Terminal Domain Length = 159

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 33/57 (57%), Positives = 45/57 (78%)
Query: 19 QKSYALKQMMNFNEVQSKLSSSEPVWKILIFDRCGQDIISPVLSKNDLRELGVTLFL 75
          +++ ALK+M+NFN    K S  EPVWK+LI+DR GQDIISP+LS  +LR++G+TL L
Sbjct: 25 RQTVALKRMLNFNVPHVKNSPGEPVWKVLIYDRFGQDIISPLLSVKELRDMGITLHL 81

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	98
1y9j_A	159	SEC1 family domain containing protein 1; membrane	2e-10
1mqs_A	671	SLY1 protein, SLY1P; SM-protein, snare, syntaxin,	1e-09
1epu_A	591	S-SEC1; parallel beta-sheets, LEFT-hand turn conne	7e-07
1dn1_A	594	NSEC1, syntaxin binding protein 1; protein-protein	3e-06
2xhe_A	650	UNC18; exocytosis, exocytosis complex, snare, neur	5e-06
3puk_A	592	Syntaxin-binding protein 3; membrane trafficking,	1e-05

>1y9j_A SEC1 family domain containing protein 1; membrane traffic, SLY1, SM proteins, snares, protein protein transport; NMR {Rattus norvegicus} Length = 159

 Score = 53.1 bits (127), Expect = 2e-10
 Identities = 33/53 (62%), Positives = 42/53 (79%)

Query: 23 ALKQMMNFNEVQSKLSSSEPVWKILIFDRCGQDIISPVLSKNDLRELGVTLFL 75
          ALK+M+NFN    K S  EPVWK+LI+DR GQDIISP+LS  +LR++G+TL L
Sbjct: 29 ALKRMLNFNVPHVKNSPGEPVWKVLIYDRFGQDIISPLLSVKELRDMGITLHL 81

>1mqs_A SLY1 protein, SLY1P; SM-protein, snare, syntaxin, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: e.25.1.1 Length = 671

 Score = 52.4 bits (124), Expect = 1e-09
 Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 11/64 (17%)

Query: 23 ALKQMMNFNE-----------VQSKLSSSEPVWKILIFDRCGQDIISPVLSKNDLRELGV 71
          A+ +M+  N+                +  E +WK+LI D      IS VL  NDL + G+
Sbjct: 26 AILKMLFLNKDLNNNDNITTITDDIFNQQEIIWKVLILDIKSTATISSVLRVNDLLKAGI 85

Query: 72 TLFL 75
          T+  
Sbjct: 86 TVHS 89

>1epu_A S-SEC1; parallel beta-sheets, LEFT-hand turn connection, helical BUN endocytosis-exocytosis complex; 2.40A {Loligo pealei} SCOP: e.25.1.1 PDB: 1fvf_A 1fvh_A Length = 591

 Score = 44.6 bits (104), Expect = 7e-07
 Identities = 9/40 (22%), Positives = 17/40 (42%)

Query: 36 KLSSSEPVWKILIFDRCGQDIISPVLSKNDLRELGVTLFL 75
                  WK+LI D+    ++S     +++   G+TL  
Sbjct: 17 LAVKKNAEWKVLIVDQLSMRMVSACCKMHEIMSEGITLVE 56

>1dn1_A NSEC1, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} SCOP: e.25.1.1 PDB: 3puj_A 3c98_A Length = 594

 Score = 43.0 bits (100), Expect = 3e-06
 Identities = 9/39 (23%), Positives = 18/39 (46%)

Query: 36 KLSSSEPVWKILIFDRCGQDIISPVLSKNDLRELGVTLF 74
          K    +  WK+L+ D+    ++S      D+   G+T+ 
Sbjct: 20 KKVKKKGEWKVLVVDQLSMRMLSSCCKMTDIMTEGITIV 58

>2xhe_A UNC18; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis} Length = 650

 Score = 42.3 bits (98), Expect = 5e-06
 Identities = 11/55 (20%), Positives = 23/55 (41%), Gaps = 7/55 (12%)

Query: 28 MNFNEVQSKL-------SSSEPVWKILIFDRCGQDIISPVLSKNDLRELGVTLFL 75
          M+       +        +    WK+L+ D+    +IS     +++ +LGVT+  
Sbjct: 2  MSLKSAVKTVLTNSLRSVADGGDWKVLVVDKPALRMISECARMSEILDLGVTVVE 56

>3puk_A Syntaxin-binding protein 3; membrane trafficking, SM protein, snare proteins, binding protein, endocytosis-exocytosis complex; 3.05A {Mus musculus} PDB: 2pjx_A Length = 592

 Score = 41.4 bits (96), Expect = 1e-05
 Identities = 12/53 (22%), Positives = 20/53 (37%), Gaps = 1/53 (1%)

Query: 23 ALKQMMNFNEVQSKLSSSEPVWKILIFDRCGQDIISPVLSKNDLRELGVTLFL 75
          ++        V       E  WKI++ D     ++S      DL E G+T+  
Sbjct: 12 SVVWRKIKTAVFDDCRK-EGEWKIMLLDEFTTKLLSSCCKMTDLLEEGITVIE 63

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	98
1y9j_A	159	SEC1 family domain containing protein 1; membrane	99.87
1mqs_A	671	SLY1 protein, SLY1P; SM-protein, snare, syntaxin,	99.75
3c98_A	606	Syntaxin-binding protein 1; protein complex, alter	99.53
3puk_A	592	Syntaxin-binding protein 3; membrane trafficking,	99.4
2xhe_A	650	UNC18; exocytosis, exocytosis complex, snare, neur	99.37
1dn1_A	594	NSEC1, syntaxin binding protein 1; protein-protein	99.35
1epu_A	591	S-SEC1; parallel beta-sheets, LEFT-hand turn conne	99.33

>1y9j_A SEC1 family domain containing protein 1; membrane traffic, SLY1, SM proteins, snares, protein protein transport; NMR {Rattus norvegicus}

Probab=99.87  E-value=5.2e-23  Score=150.24  Aligned_cols=74  Identities=46%  Similarity=0.712  Sum_probs=67.9

Q ss_pred             cchHHHHHHHHHHHhhcCCCcCCcCCCCCCceEEEEEecCCCceeecccchhHHhhcCceEEEeccccchhhhH
Q psy8393          13 KGVVIIQKSYALKQMMNFNEVQSKLSSSEPVWKILIFDRCGQDIISPVLSKNDLRELGVTLFLYSAEVLDEEYS   86 (98)
Q Consensus        13 ~~~Lre~Q~~aL~~MLnlN~~~~~~~~~e~~WKVLI~D~~~qdIISplLrV~DLR~~GVTLHl~L~~~Rep~~~   86 (98)
                      +.+||++|+++|.+||++|++.+.+.+.++.|||||+|+.+++|||++++++||+++|||+|..|+++|+|+|.
T Consensus        19 ~~sLr~~qr~~l~~mL~~~~~~~~~~~~~~~wKVLVlD~~t~~iiS~~~~~sdLl~~gVtlve~i~~~R~p~~~   92 (159)
T 1y9j_A           19 AASIRERQTVALKRMLNFNVPHVKNSPGEPVWKVLIYDRFGQDIISPLLSVKELRDMGITLHLLLHSDRDPIRD   92 (159)
T ss_dssp             -CHHHHHHHHHHHHHTTCCCSCCCSSSSCCCCEEEEECHHHHHHHTTTCCHHHHHHHTEEEEEETTSCCCCBTT
T ss_pred             HHHHHHHHHHHHHHHHhccCCcccccccCCCcEEEEEecccHHHHHHHhCHHHHHhCCcEEEeeccCCCCCCCC
Confidence            36899999999999999998765555668899999999999999999999999999999999999999999873

>1mqs_A SLY1 protein, SLY1P; SM-protein, snare, syntaxin, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: e.25.1.1

Probab=99.75  E-value=3.4e-19  Score=149.50  Aligned_cols=82  Identities=23%  Similarity=0.254  Sum_probs=68.5

Q ss_pred             cccccchHHHHHHHHHHHhhcCCCcC--CcCCC---------CCCceEEEEEecCCCceeecccchhHHhhcCceEEEec
Q psy8393           9 GQTQKGVVIIQKSYALKQMMNFNEVQ--SKLSS---------SEPVWKILIFDRCGQDIISPVLSKNDLRELGVTLFLYS   77 (98)
Q Consensus         9 ~~~~~~~Lre~Q~~aL~~MLnlN~~~--~~~~~---------~e~~WKVLI~D~~~qdIISplLrV~DLR~~GVTLHl~L   77 (98)
                      ..+...+||++|+++|.+|||+|++.  +.+.+         +++.|||||+|+.+++|||++++++||+++|||+|+.|
T Consensus        12 ~~~~~~~lr~~q~~~l~~ml~~~~~~~~~~~~~~~~~~~~~~~~~~~KvLVlD~~~~~ils~~~~~s~L~~~gVtlv~~l   91 (671)
T 1mqs_A           12 ASRKDISLRDMQISAILKMLFLNKDLNNNDNITTITDDIFNQQEIIWKVLILDIKSTATISSVLRVNDLLKAGITVHSLI   91 (671)
T ss_dssp             ---CCCCHHHHHHHHHHHHHTTTTTTTSCCCCSSCCHHHHHHHCCCCEEEEECHHHHHHHTTTCCHHHHHHTTEEEEEET
T ss_pred             hccCcccHHHHHHHHHHHHHccCCCCcccccccccccccccccCCCCEEEEEccccHHHHHHhcCHHHHHhCCCeEEeec
Confidence            45677899999999999999999862  22222         37899999999999999999999999999999999999


Q ss_pred             cccchhhh--HHHHH
Q psy8393          78 AEVLDEEY--SALCL   90 (98)
Q Consensus        78 ~~~Rep~~--~a~~~   90 (98)
                      +++|+|+|  .|+|+
T Consensus        92 ~~~r~~~~~~~aIYf  106 (671)
T 1mqs_A           92 KQDRSPLPDVPAIYF  106 (671)
T ss_dssp             TSCCCCEEEEEEEEE
T ss_pred             cCCCCCCCCceEEEE
Confidence            99999986  44543

>3c98_A Syntaxin-binding protein 1; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus} PDB: 3puj_A

Probab=99.53  E-value=1.3e-15  Score=125.51  Aligned_cols=69  Identities=13%  Similarity=0.135  Sum_probs=57.0

Q ss_pred             cccchHHHHHHHHH-HHhhcCCCcCCcCCCCCCceEEEEEecCCCceeecccchhHHhhcCceEEEeccccchhhhH
Q psy8393          11 TQKGVVIIQKSYAL-KQMMNFNEVQSKLSSSEPVWKILIFDRCGQDIISPVLSKNDLRELGVTLFLYSAEVLDEEYS   86 (98)
Q Consensus        11 ~~~~~Lre~Q~~aL-~~MLnlN~~~~~~~~~e~~WKVLI~D~~~qdIISplLrV~DLR~~GVTLHl~L~~~Rep~~~   86 (98)
                      -+..+||+.+++.+ ..|+.-..+       +..|||||+|+.|++||||+++++|||++|||+|+.|+++|+|+|.
T Consensus        13 ~~p~~l~~~~~~~~l~~~i~~v~~-------~~~wKvLi~D~~t~~iis~~~~~~~L~~~gVtl~~~i~~~R~~~~~   82 (606)
T 3c98_A           13 MAPIGLKAVVGEKIMHDVIKKVKK-------KGEWKVLVVDQLSMRMLSSCCKMTDIMTEGITIVEDINKRREPLPS   82 (606)
T ss_dssp             ---CCHHHHHHHHHHHHTHHHHCB-------TTBCEEEEECHHHHHHHHTTCCHHHHTTTTEEEEEETTSCCCCBTT
T ss_pred             cCcHHHHHHHHHHHHHHHHhccCC-------CCceEEEEEcCCChHHHHhhCCHHHHHHCCCeEEEeccCCCCCCCC
Confidence            35678999988665 468874322       2359999999999999999999999999999999999999999985

>3puk_A Syntaxin-binding protein 3; membrane trafficking, SM protein, snare proteins, binding protein, endocytosis-exocytosis complex; 3.05A {Mus musculus} PDB: 2pjx_A

Probab=99.40  E-value=6.1e-14  Score=116.97  Aligned_cols=67  Identities=18%  Similarity=0.201  Sum_probs=59.7

Q ss_pred             cchHHHHHHHHHHH-hhcCCCcCCcCCCCCCceEEEEEecCCCceeecccchhHHhhcCceEEEeccccchhhhH
Q psy8393          13 KGVVIIQKSYALKQ-MMNFNEVQSKLSSSEPVWKILIFDRCGQDIISPVLSKNDLRELGVTLFLYSAEVLDEEYS   86 (98)
Q Consensus        13 ~~~Lre~Q~~aL~~-MLnlN~~~~~~~~~e~~WKVLI~D~~~qdIISplLrV~DLR~~GVTLHl~L~~~Rep~~~   86 (98)
                      +.+||+..++.|.. ||..-.       .++.|||||+|+.+++|||++++++||+++|||+|..|+++|+|+|+
T Consensus         7 ~~~lk~~~~~~l~~~~l~~v~-------~~~~~KvLvlD~~t~~ils~~~~~sdLl~~gVtlve~i~~~R~~~~~   74 (592)
T 3puk_A            7 ERGLKSVVWRKIKTAVFDDCR-------KEGEWKIMLLDEFTTKLLSSCCKMTDLLEEGITVIENIYKNREPVRQ   74 (592)
T ss_dssp             CCCHHHHHHHHHHHHTTGGGC-------CTTCCEEEEECHHHHHHHHHSSCTTGGGGGTEEEEEESSSCCCCBTT
T ss_pred             ChhHHHHHHHHHHHHHHHhhc-------ccCCCEEEEECCccHHHHHHHhcHHHHHhCCcEEEeeccCccCCCCC
Confidence            68899999988876 888432       14689999999999999999999999999999999999999999884

>2xhe_A UNC18; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}

Probab=99.37  E-value=2e-13  Score=114.12  Aligned_cols=65  Identities=17%  Similarity=0.177  Sum_probs=57.9

Q ss_pred             chHHHHHHHHHH-HhhcCCCcCCcCCCCCCceEEEEEecCCCceeecccchhHHhhcCceEEEeccccchhhhH
Q psy8393          14 GVVIIQKSYALK-QMMNFNEVQSKLSSSEPVWKILIFDRCGQDIISPVLSKNDLRELGVTLFLYSAEVLDEEYS   86 (98)
Q Consensus        14 ~~Lre~Q~~aL~-~MLnlN~~~~~~~~~e~~WKVLI~D~~~qdIISplLrV~DLR~~GVTLHl~L~~~Rep~~~   86 (98)
                      .+||+.+++.|. .+|.. .+       ++.|||||+|+.+++|||++++++||+++|||+|+.|+++|+|+|.
T Consensus         2 ~~l~~~~r~~ll~~~l~v-~~-------~~~~KvLvlD~~~~~ils~~~~~s~L~~~gV~lv~~l~~~r~~~~~   67 (650)
T 2xhe_A            2 MSLKSAVKTVLTNSLRSV-AD-------GGDWKVLVVDKPALRMISECARMSEILDLGVTVVEDVSKQRKVLPQ   67 (650)
T ss_dssp             CCHHHHHHHHHHHHHTTC-CC-------CSSCEEEEECHHHHHHHHTTCCHHHHHTTTEEEEEETTTCCSCBTT
T ss_pred             ccHHHHHHHHHHHHHhcc-cc-------CCCCEEEEEccccHHHHHhhcCHHHHHhCCCEEEEeccCCCCCCCC
Confidence            579999999999 99932 21       2469999999999999999999999999999999999999999864

>1dn1_A NSEC1, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3puj_A 3c98_A

Probab=99.35  E-value=1.9e-13  Score=114.08  Aligned_cols=67  Identities=13%  Similarity=0.135  Sum_probs=57.2

Q ss_pred             cchHHHHHHHHHHH-hhcCCCcCCcCCCCCCceEEEEEecCCCceeecccchhHHhhcCceEEEeccccchhhhH
Q psy8393          13 KGVVIIQKSYALKQ-MMNFNEVQSKLSSSEPVWKILIFDRCGQDIISPVLSKNDLRELGVTLFLYSAEVLDEEYS   86 (98)
Q Consensus        13 ~~~Lre~Q~~aL~~-MLnlN~~~~~~~~~e~~WKVLI~D~~~qdIISplLrV~DLR~~GVTLHl~L~~~Rep~~~   86 (98)
                      ..+||+..++.|.. ||..-++       .+.|||||+|+.+++|||++++++||+++|||+|..|+++|+|+|+
T Consensus         3 ~~~lk~~~~~~l~~~~l~~~~~-------~~~~KvLilD~~t~~ils~~~~~s~Ll~~gVtlve~i~~~R~~~~~   70 (594)
T 1dn1_A            3 PIGLKAVVGEKIMHDVIKKVKK-------KGEWKVLVVDQLSMRMLSSCCKMTDIMTEGITIVEDINKRREPLPS   70 (594)
T ss_dssp             -CCHHHHHHHHHHHHTTGGGCC-------TTCCEEEEECHHHHHHHHHHCCHHHHHTTTEEEEEETTSCCCCCTT
T ss_pred             chhHHHHHHHHHHHHHHhhccc-------CCCCEEEEECcccHHHHHHHhCHHHHhhCCeEEEEecccccCCCCC
Confidence            35788887777755 7874221       3579999999999999999999999999999999999999999986

>1epu_A S-SEC1; parallel beta-sheets, LEFT-hand turn connection, helical BUN endocytosis-exocytosis complex; 2.40A {Loligo pealei} SCOP: e.25.1.1 PDB: 1fvf_A 1fvh_A

Probab=99.33  E-value=1.5e-13  Score=112.71  Aligned_cols=65  Identities=14%  Similarity=0.155  Sum_probs=56.2

Q ss_pred             hHHHHHHHHHH-HhhcCCCcCCcCCCCCCceEEEEEecCCCceeecccchhHHhhcCceEEEeccccchhhhH
Q psy8393          15 VVIIQKSYALK-QMMNFNEVQSKLSSSEPVWKILIFDRCGQDIISPVLSKNDLRELGVTLFLYSAEVLDEEYS   86 (98)
Q Consensus        15 ~Lre~Q~~aL~-~MLnlN~~~~~~~~~e~~WKVLI~D~~~qdIISplLrV~DLR~~GVTLHl~L~~~Rep~~~   86 (98)
                      +||+.+++.+. .|++.-.+       .+.|||||+|+.+++|||++++++||+++|||+|+.|+++|+|+|.
T Consensus         2 ~l~~~~~~~~~~~i~~~~~~-------~~~~KvLvlD~~~~~ils~~~~~s~L~~~gV~lv~~l~~~r~~~~~   67 (591)
T 1epu_A            2 ALKTAVHEKIMNDVVLAVKK-------NAEWKVLIVDQLSMRMVSACCKMHEIMSEGITLVEDINRRREPLPL   67 (591)
T ss_dssp             CHHHHHHHHHHHHTHHHHCS-------SSCCEEEEECHHHHHHHHHHCCHHHHHTTTEEEEEESSSCCCCEEE
T ss_pred             ChHHHHHHHHHHHHHHhhcc-------CCCcEEEEEccccHHHHHHhcCHHHHHHCCCEEEeecccCCCCCCC
Confidence            68888888877 78873222       2469999999999999999999999999999999999999999863

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	98
d1mqsa_	653	e.25.1.1 (A:) Sly1P protein {Baker's yeast (Saccha	2e-13
d1epua_	590	e.25.1.1 (A:) Neuronal Sec1, NSec1 {Longfin inshor	8e-09
d1dn1a_	589	e.25.1.1 (A:) Neuronal Sec1, NSec1 {Rat (Rattus no	8e-09

>d1mqsa_ e.25.1.1 (A:) Sly1P protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 653

class: Multi-domain proteins (alpha and beta)
fold: Sec1/munc18-like (SM) proteins
superfamily: Sec1/munc18-like (SM) proteins
family: Sec1/munc18-like (SM) proteins
domain: Sly1P protein
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.7 bits (149), Expect = 2e-13
 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 11/64 (17%)

Query: 23 ALKQMMNFNEVQSK-----------LSSSEPVWKILIFDRCGQDIISPVLSKNDLRELGV 71
          A+ +M+  N+  +             +  E +WK+LI D      IS VL  NDL + G+
Sbjct: 12 AILKMLFLNKDLNNNDNITTITDDIFNQQEIIWKVLILDIKSTATISSVLRVNDLLKAGI 71

Query: 72 TLFL 75
          T+  
Sbjct: 72 TVHS 75

>d1epua_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Longfin inshore squid (Loligo pealei) [TaxId: 6621]} Length = 590

class: Multi-domain proteins (alpha and beta)
fold: Sec1/munc18-like (SM) proteins
superfamily: Sec1/munc18-like (SM) proteins
family: Sec1/munc18-like (SM) proteins
domain: Neuronal Sec1, NSec1
species: Longfin inshore squid (Loligo pealei) [TaxId: 6621]

 Score = 48.9 bits (116), Expect = 8e-09
 Identities = 9/35 (25%), Positives = 17/35 (48%)

Query: 41 EPVWKILIFDRCGQDIISPVLSKNDLRELGVTLFL 75
             WK+LI D+    ++S     +++   G+TL  
Sbjct: 21 NAEWKVLIVDQLSMRMVSACCKMHEIMSEGITLVE 55

>d1dn1a_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 589

class: Multi-domain proteins (alpha and beta)
fold: Sec1/munc18-like (SM) proteins
superfamily: Sec1/munc18-like (SM) proteins
family: Sec1/munc18-like (SM) proteins
domain: Neuronal Sec1, NSec1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 48.9 bits (116), Expect = 8e-09
 Identities = 12/56 (21%), Positives = 26/56 (46%), Gaps = 4/56 (7%)

Query: 23 ALKQMMN---FNEVQSKLSSSEPVWKILIFDRCGQDIISPVLSKNDLRELGVTLFL 75
           LK ++     ++V  K+   +  WK+L+ D+    ++S      D+   G+T+  
Sbjct: 2  GLKAVVGEKIMHDVIKKVKK-KGEWKVLVVDQLSMRMLSSCCKMTDIMTEGITIVE 56

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	98
d1mqsa_	653	Sly1P protein {Baker's yeast (Saccharomyces cerevi	99.83
d1dn1a_	589	Neuronal Sec1, NSec1 {Rat (Rattus norvegicus) [Tax	99.46
d1epua_	590	Neuronal Sec1, NSec1 {Longfin inshore squid (Lolig	99.42

>d1mqsa_ e.25.1.1 (A:) Sly1P protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Multi-domain proteins (alpha and beta)
fold: Sec1/munc18-like (SM) proteins
superfamily: Sec1/munc18-like (SM) proteins
family: Sec1/munc18-like (SM) proteins
domain: Sly1P protein
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.83  E-value=3.6e-22  Score=161.25  Aligned_cols=73  Identities=25%  Similarity=0.250  Sum_probs=66.8

Q ss_pred             chHHHHHHHHHHHhhcCCCcCCcCC-----------CCCCceEEEEEecCCCceeecccchhHHhhcCceEEEeccccch
Q psy8393          14 GVVIIQKSYALKQMMNFNEVQSKLS-----------SSEPVWKILIFDRCGQDIISPVLSKNDLRELGVTLFLYSAEVLD   82 (98)
Q Consensus        14 ~~Lre~Q~~aL~~MLnlN~~~~~~~-----------~~e~~WKVLI~D~~~qdIISplLrV~DLR~~GVTLHl~L~~~Re   82 (98)
                      .+||++|++++++|||||+|.+.++           .++++|||||+|+.+.+|||++++++||+++|||+|..|+++||
T Consensus         3 ~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~WKvLv~D~~t~~iis~~~~~~~Ll~~gV~lve~i~~~R~   82 (653)
T d1mqsa_           3 ISLRDMQISAILKMLFLNKDLNNNDNITTITDDIFNQQEIIWKVLILDIKSTATISSVLRVNDLLKAGITVHSLIKQDRS   82 (653)
T ss_dssp             CCHHHHHHHHHHHHHTTTTTTTSCCCCSSCCHHHHHHHCCCCEEEEECHHHHHHHTTTCCHHHHHHTTEEEEEETTSCCC
T ss_pred             CCHHHHHHHHHHHHHhcCCCCCCCCccccccccccccCCCcceEEEEeCCchHHHHHhCCHHHHHHCCCEEEEecCCCCC
Confidence            5899999999999999998855543           35789999999999999999999999999999999999999999


Q ss_pred             hhhH
Q psy8393          83 EEYS   86 (98)
Q Consensus        83 p~~~   86 (98)
                      |+|.
T Consensus        83 ~~~~   86 (653)
T d1mqsa_          83 PLPD   86 (653)
T ss_dssp             CEEE
T ss_pred             CCCC
Confidence            9875

>d1dn1a_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Multi-domain proteins (alpha and beta)
fold: Sec1/munc18-like (SM) proteins
superfamily: Sec1/munc18-like (SM) proteins
family: Sec1/munc18-like (SM) proteins
domain: Neuronal Sec1, NSec1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.46  E-value=5.9e-15  Score=117.65  Aligned_cols=65  Identities=14%  Similarity=0.165  Sum_probs=55.9

Q ss_pred             hHHHHHHHHHHH-hhcCCCcCCcCCCCCCceEEEEEecCCCceeecccchhHHhhcCceEEEeccccchhhhH
Q psy8393          15 VVIIQKSYALKQ-MMNFNEVQSKLSSSEPVWKILIFDRCGQDIISPVLSKNDLRELGVTLFLYSAEVLDEEYS   86 (98)
Q Consensus        15 ~Lre~Q~~aL~~-MLnlN~~~~~~~~~e~~WKVLI~D~~~qdIISplLrV~DLR~~GVTLHl~L~~~Rep~~~   86 (98)
                      .||+.+++.+.. ||+...+       +..|||||+|+.+.+|||++++++|||++|||+|+.|+++|+|+|.
T Consensus         2 ~~~~~~~~~~l~~~~~~v~~-------~~~wKvLI~D~~~~~ils~~~~~~~L~~~gV~l~~~l~~~r~~~~~   67 (589)
T d1dn1a_           2 GLKAVVGEKIMHDVIKKVKK-------KGEWKVLVVDQLSMRMLSSCCKMTDIMTEGITIVEDINKRREPLPS   67 (589)
T ss_dssp             CHHHHHHHHHHHHTTGGGCC-------TTCCEEEEECHHHHHHHHHHCCHHHHHTTTEEEEEETTSCCCCCTT
T ss_pred             ChHHHHHHHHHHHHHhccCC-------CCccEEEEEcCCcHHHHHhhcCHHHHHHCCCeEEEeccCCCCCCCC
Confidence            478888877664 8884432       2469999999999999999999999999999999999999999875

>d1epua_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Longfin inshore squid (Loligo pealei) [TaxId: 6621]}

class: Multi-domain proteins (alpha and beta)
fold: Sec1/munc18-like (SM) proteins
superfamily: Sec1/munc18-like (SM) proteins
family: Sec1/munc18-like (SM) proteins
domain: Neuronal Sec1, NSec1
species: Longfin inshore squid (Loligo pealei) [TaxId: 6621]

Probab=99.42  E-value=1e-14  Score=116.05  Aligned_cols=65  Identities=14%  Similarity=0.155  Sum_probs=55.1

Q ss_pred             hHHHHHHHHHH-HhhcCCCcCCcCCCCCCceEEEEEecCCCceeecccchhHHhhcCceEEEeccccchhhhH
Q psy8393          15 VVIIQKSYALK-QMMNFNEVQSKLSSSEPVWKILIFDRCGQDIISPVLSKNDLRELGVTLFLYSAEVLDEEYS   86 (98)
Q Consensus        15 ~Lre~Q~~aL~-~MLnlN~~~~~~~~~e~~WKVLI~D~~~qdIISplLrV~DLR~~GVTLHl~L~~~Rep~~~   86 (98)
                      +||+..++.+. .||+-.++       +..|||||+|+.+.+|||++++++||+++|||+|++|+++|+|+|.
T Consensus         1 ~~~~~~~~~~l~~~~~~v~~-------~~~wKvLi~D~~t~~ils~~~~~~~L~~~gV~l~~~l~~~r~~~~~   66 (590)
T d1epua_           1 ALKTAVHEKIMNDVVLAVKK-------NAEWKVLIVDQLSMRMVSACCKMHEIMSEGITLVEDINRRREPLPL   66 (590)
T ss_dssp             CHHHHHHHHHHHHTHHHHCS-------SSCCEEEEECHHHHHHHHHHCCHHHHHTTTEEEEEESSSCCCCEEE
T ss_pred             ChHHHHHHHHHHHHHHhcCC-------CCCcEEEEEcCCcHHHHHhhcCHHHHHHCCCeEEEeccCCCCCCCC
Confidence            47777776666 48884432       2469999999999999999999999999999999999999999864