Psyllid ID: psy8397

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200---
Protein Sequence
RTDSNHGTIWCWQIISAQYSHRISVDDILDTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTIPYLQTIGLHCPQYHNPAD
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHcccEEEEccccccccHHHHHHHHHHHHHHHHcccEEEEEcccccHHHHHHHHHHHHcccccHHHHHHHHHHHHccccEEEccccccHHHHHHHHHHHHHcccEEEEEcccccHHHHHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHcccccHccHHHHHHHHHHHHHcccccEEEEEcccccccHHHHHHHHHHHHHHHHcccEEEEEEcHHHHHHHHHccEEEEEcccEEEEcccHHHHHcccccHHHHHHHHHcEEEcccHHHHHHccccEEEHHHHHHHHHHHEEccccccccccccc
Coil and Loop (DISEMBL)
rtdsnhgtiWCWQIISAQyshrisvddilDTIGLVDDILDTIGLVLSKhtlcgrlsggqKKRLSIALElidnppimfldepttgldsnstNQCVAMLKALARggrtivctihqpsaTIFEMVDhlgldsnsTNQCVAMLKALARggrtivctihqpsatIFEMVDHLYVIAEghcvykgssantipylqtiglhcpqyhnpad
Flexible Loop (DISEMBL)
RTDSNHGTIWCWQIISAQYSHRISVDDILDTIGLVDDILDTIGLVLSKHtlcgrlsggqKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTIPYLQTIGLHCPQYHNPAD
Low Complexity Region (SEG)
RTDSNHGTIWCWQIISAQYSHRISVDDILDTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTIPYLQTIGLHCPQYHNPAD
Disordered region (IsUnstruct)
******GTIWCWQIISAQYSHRISVDDILDTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTIPYLQTIGLHCPQY*****
Disordered Region (DISOPRED)
RTDSNHGTIWCWQIISAQYSH************LVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTIPYLQTIGLHCPQYHN***
Disordered Region (DISEMBL)
RTDSNHGTIWCWQIISAQYSHRISVDDILDTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTIPYLQTIGLHCPQYHNPAD
Disordered Region (DISPRO)
***SNHGTIWCWQIISAQYSHRISVDDILDTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTIPYLQTIGLHCPQYH****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
RTDSNHGTIWCWQIISAQYSHRISVDDILDTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTIPYLQTIGLHCPQYHNPAD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	203	2.2.26 [Sep-21-2011]
Q9H172	646	ATP-binding cassette sub-	yes	N/A	0.630	0.198	0.464	7e-41
Q64343	666	ATP-binding cassette sub-	no	N/A	0.630	0.192	0.452	1e-39
P45844	678	ATP-binding cassette sub-	no	N/A	0.630	0.188	0.447	2e-39
Q8ST66	1476	ABC transporter G family	yes	N/A	0.655	0.090	0.344	5e-22
P45843	666	Protein scarlet OS=Drosop	no	N/A	0.630	0.192	0.329	7e-22
Q55DW4	793	ABC transporter G family	no	N/A	0.625	0.160	0.312	1e-21
Q08234	1294	Uncharacterized ABC trans	yes	N/A	0.630	0.098	0.357	1e-21
Q7TMS5	657	ATP-binding cassette sub-	no	N/A	0.527	0.162	0.348	2e-21
Q80W57	657	ATP-binding cassette sub-	no	N/A	0.645	0.199	0.316	3e-21
Q5MB13	654	ATP-binding cassette sub-	no	N/A	0.527	0.163	0.342	4e-21

>sp|Q9H172|ABCG4_HUMAN ATP-binding cassette sub-family G member 4 OS=Homo sapiens GN=ABCG4 PE=2 SV=2

 Score =  166 bits (421), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 79/170 (46%), Positives = 103/170 (60%), Gaps = 42/170 (24%)

Query: 34  LVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQC 93
           LV +IL  +GL+   HT    LSGGQ+KRL+IALEL++NPP+MF DEPT+GLDS S  Q 
Sbjct: 180 LVTEILTALGLMSCSHTRTALLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASCFQV 239

Query: 94  VAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTI 153
           V+++K+LA+GGRTI+CTIHQPSA +FEM D                              
Sbjct: 240 VSLMKSLAQGGRTIICTIHQPSAKLFEMFD------------------------------ 269

Query: 154 HQPSATIFEMVDHLYVIAEGHCVYKGSSANTIPYLQTIGLHCPQYHNPAD 203
                        LY++++G C++KG   N IPYL+ +GLHCP YHNPAD
Sbjct: 270 ------------KLYILSQGQCIFKGVVTNLIPYLKGLGLHCPTYHNPAD 307

May be involved in macrophage lipid homeostasis.
Homo sapiens (taxid: 9606)

>sp|Q64343|ABCG1_MOUSE ATP-binding cassette sub-family G member 1 OS=Mus musculus GN=Abcg1 PE=2 SV=1

 Score =  162 bits (411), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 77/170 (45%), Positives = 104/170 (61%), Gaps = 42/170 (24%)

Query: 34  LVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQC 93
           +V +IL  +GL+   +T  G LSGGQ+KRL+IALEL++NPP+MF DEPT+GLDS S  Q 
Sbjct: 196 MVKEILTALGLLPCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASCFQV 255

Query: 94  VAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTI 153
           V+++K LA+GGR+IVCTIHQPSA +FE+ D                              
Sbjct: 256 VSLMKGLAQGGRSIVCTIHQPSAKLFELFD------------------------------ 285

Query: 154 HQPSATIFEMVDHLYVIAEGHCVYKGSSANTIPYLQTIGLHCPQYHNPAD 203
                        LYV+++G CVY+G  +N +PYL+ +GL+CP YHNPAD
Sbjct: 286 ------------QLYVLSQGQCVYRGKVSNLVPYLRDLGLNCPTYHNPAD 323

Transporter involved in macrophage lipid homeostasis. Is an active component of the macrophage lipid export complex. Could also be involved in intracellular lipid transport processes. The role in cellular lipid homeostasis may not be limited to macrophages.

Mus musculus (taxid: 10090)

>sp|P45844|ABCG1_HUMAN ATP-binding cassette sub-family G member 1 OS=Homo sapiens GN=ABCG1 PE=2 SV=3

 Score =  161 bits (408), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 76/170 (44%), Positives = 103/170 (60%), Gaps = 42/170 (24%)

Query: 34  LVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQC 93
           +V +IL  +GL+   +T  G LSGGQ+KRL+IALEL++NPP+MF DEPT+GLDS S  Q 
Sbjct: 196 MVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASCFQV 255

Query: 94  VAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTI 153
           V+++K LA+GGR+I+CTIHQPSA +FE+ D                              
Sbjct: 256 VSLMKGLAQGGRSIICTIHQPSAKLFELFD------------------------------ 285

Query: 154 HQPSATIFEMVDHLYVIAEGHCVYKGSSANTIPYLQTIGLHCPQYHNPAD 203
                        LYV+++G CVY+G   N +PYL+ +GL+CP YHNPAD
Sbjct: 286 ------------QLYVLSQGQCVYRGKVCNLVPYLRDLGLNCPTYHNPAD 323

Transporter involved in macrophage lipid homeostasis. Is an active component of the macrophage lipid export complex. Could also be involved in intracellular lipid transport processes. The role in cellular lipid homeostasis may not be limited to macrophages.

Homo sapiens (taxid: 9606)

>sp|Q8ST66|ABCGI_DICDI ABC transporter G family member 18 OS=Dictyostelium discoideum GN=abcG18 PE=3 SV=1

 Score =  104 bits (259), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 60/174 (34%), Positives = 92/174 (52%), Gaps = 41/174 (23%)

Query: 34   LVDDILDTIGLVLSKHTLCGRLSGG----QKKRLSIALELIDNPPIMFLDEPTTGLDSNS 89
             VD+IL+T+ L+  +H+L G +  G    Q+KR+++ +EL  +P ++FLDEPT+GLDS++
Sbjct: 928  FVDNILETLNLLKIQHSLIGDVESGLSLSQRKRVNMGIELASDPQLLFLDEPTSGLDSSA 987

Query: 90   TNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTI 149
              + + ++K +A  GR+++CTIHQPS TIF+  DHL L              L RGG T+
Sbjct: 988  ALKVMNLIKKIASSGRSVICTIHQPSTTIFKKFDHLLL--------------LKRGGETV 1033

Query: 150  VCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTIPYLQTIGLHCPQYHNPAD 203
                  P+ T                    +S   + Y    GL C  + NPAD
Sbjct: 1034 Y---FGPTGT--------------------NSKIVLNYFAERGLICDPFKNPAD 1064

Required for endocytosis and endosomal pH regulation.

Dictyostelium discoideum (taxid: 44689)

>sp|P45843|SCRT_DROME Protein scarlet OS=Drosophila melanogaster GN=st PE=1 SV=3

 Score =  103 bits (257), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 58/176 (32%), Positives = 89/176 (50%), Gaps = 48/176 (27%)

Query: 34  LVDDILDTIGLVLSKHTLCGR------LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDS 87
           ++ ++L+  GL+ +  T  G       LSGG++KRL+ A+EL++NP I+F DEPTTGLDS
Sbjct: 189 IIKELLERTGLLSAAQTRIGSGDDKKVLSGGERKRLAFAVELLNNPVILFCDEPTTGLDS 248

Query: 88  NSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGR 147
            S  Q VA L  LA+ G TI+CTIHQPS+ +F+  +++ L                    
Sbjct: 249 YSAQQLVATLYELAQKGTTILCTIHQPSSQLFDNFNNVML-------------------- 288

Query: 148 TIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTIPYLQTIGLHCPQYHNPAD 203
                                 +A+G   + GS  + + +    G +CP+ +NPAD
Sbjct: 289 ----------------------LADGRVAFTGSPQHALSFFANHGYYCPEAYNPAD 322

Part of a membrane-spanning permease system necessary for the transport of pigment precursors into pigment cells responsible for eye color. Scarlet and white complex transports a metabolic intermediate (such as 3-hydroxy kynurenine) from the cytoplasm into the pigment granules.

Drosophila melanogaster (taxid: 7227)

>sp|Q55DW4|ABCG1_DICDI ABC transporter G family member 1 OS=Dictyostelium discoideum GN=abcG1 PE=3 SV=1

 Score =  103 bits (256), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 55/176 (31%), Positives = 88/176 (50%), Gaps = 49/176 (27%)

Query: 35  VDDILDTIGLVLSKHTLCGR-------LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDS 87
           V DI+D +GL     TL G        +SGG+++R++I++EL+  P ++ LDEPT+GLD+
Sbjct: 237 VQDIIDEMGLNRCADTLVGTADNKIRGISGGERRRVTISIELLTGPSVILLDEPTSGLDA 296

Query: 88  NSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGR 147
           +++   ++ LK LA+ GRTI+CTIHQP + I++M D+L L                    
Sbjct: 297 STSFYVMSALKKLAKSGRTIICTIHQPRSNIYDMFDNLLL-------------------- 336

Query: 148 TIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTIPYLQTIGLHCPQYHNPAD 203
                                 + +G+ +Y G +   + Y    G HC +  NPAD
Sbjct: 337 ----------------------LGDGNTIYYGKANKALEYFNANGYHCSEKTNPAD 370

Dictyostelium discoideum (taxid: 44689)

>sp|Q08234|YO075_YEAST Uncharacterized ABC transporter ATP-binding protein/permease YOL075C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YOL075C PE=1 SV=3

 Score =  102 bits (255), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 63/176 (35%), Positives = 88/176 (50%), Gaps = 48/176 (27%)

Query: 34  LVDDILDTIGLVLSKHTLCGR-----LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSN 88
           +V+ +++ +GL     TL G      LSGG+K+RLSI  ++I NP IMFLDEPTTGLD+ 
Sbjct: 160 MVEQLIEELGLKDCADTLVGDNSHRGLSGGEKRRLSIGTQMISNPSIMFLDEPTTGLDAY 219

Query: 89  STNQCVAMLKALAR-GGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGR 147
           S    +  LK LA+  GRT + +IHQP + I  ++D                        
Sbjct: 220 SAFLVIKTLKKLAKEDGRTFIMSIHQPRSDILFLLDQ----------------------- 256

Query: 148 TIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTIPYLQTIGLHCPQYHNPAD 203
             VC                 ++++G+ VY     NTIPY ++IG H PQ  NPAD
Sbjct: 257 --VC-----------------ILSKGNVVYCDKMDNTIPYFESIGYHVPQLVNPAD 293

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q7TMS5|ABCG2_MOUSE ATP-binding cassette sub-family G member 2 OS=Mus musculus GN=Abcg2 PE=2 SV=1

 Score =  102 bits (253), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 52/149 (34%), Positives = 76/149 (51%), Gaps = 42/149 (28%)

Query: 55  LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQP 114
           +SGG++KR SI +ELI +P I+FLDEPTTGLDS++ N  + +LK +++ GRTI+ +IHQP
Sbjct: 185 ISGGERKRTSIGMELITDPSILFLDEPTTGLDSSTANAVLLLLKRMSKQGRTIIFSIHQP 244

Query: 115 SATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGH 174
             +IF++ D L L                                          +A G 
Sbjct: 245 RYSIFKLFDSLTL------------------------------------------LASGK 262

Query: 175 CVYKGSSANTIPYLQTIGLHCPQYHNPAD 203
            V+ G +   + Y  + G HC  Y+NPAD
Sbjct: 263 LVFHGPAQKALEYFASAGYHCEPYNNPAD 291

Xenobiotic transporter that may play an important role in the exclusion of xenobiotics from the brain. May be involved in brain-to-blood efflux (By similarity). May play a role in early stem cell self-renewal by blocking differentiation.

Mus musculus (taxid: 10090)

>sp|Q80W57|ABCG2_RAT ATP-binding cassette sub-family G member 2 OS=Rattus norvegicus GN=Abcg2 PE=1 SV=1

 Score =  101 bits (252), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 57/180 (31%), Positives = 91/180 (50%), Gaps = 49/180 (27%)

Query: 25  VDDILDTIGLVDDILDT-IGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTT 83
           ++ I+  +GL D + D+ +G   ++      +SGG++KR SI +ELI +P I+FLDEPTT
Sbjct: 160 INTIIKELGL-DKVADSKVGTQFTRG-----ISGGERKRTSIGMELITDPSILFLDEPTT 213

Query: 84  GLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALA 143
           GLDS++ N  + +LK +++ GRTI+ +IHQP  +IF++ D L L                
Sbjct: 214 GLDSSTANAVLLLLKRMSKQGRTIIFSIHQPRYSIFKLFDSLTL---------------- 257

Query: 144 RGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTIPYLQTIGLHCPQYHNPAD 203
                                     +A G  ++ G +   + Y  + G HC  Y+NPAD
Sbjct: 258 --------------------------LASGKLMFHGPAQKALEYFASAGYHCEPYNNPAD 291

Xenobiotic transporter that may play an important role in the exclusion of xenobiotics from the brain. May be involved in brain-to-blood efflux.

Rattus norvegicus (taxid: 10116)

>sp|Q5MB13|ABCG2_MACMU ATP-binding cassette sub-family G member 2 OS=Macaca mulatta GN=ABCG2 PE=2 SV=1

 Score =  101 bits (251), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 51/149 (34%), Positives = 77/149 (51%), Gaps = 42/149 (28%)

Query: 55  LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQP 114
           +SGG++KR SI +ELI +P I+FLDEPTTGLDS++ N  + +LK +++ GRTI+ +IHQP
Sbjct: 186 VSGGERKRTSIGMELITDPSILFLDEPTTGLDSSTANAVLLLLKRMSKQGRTIIFSIHQP 245

Query: 115 SATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGH 174
             +IF++ D L L                                          +A G 
Sbjct: 246 RYSIFKLFDSLTL------------------------------------------LASGR 263

Query: 175 CVYKGSSANTIPYLQTIGLHCPQYHNPAD 203
            ++ G +   + Y ++ G HC  Y+NPAD
Sbjct: 264 LMFHGPAQEALGYFESAGYHCEAYNNPAD 292

Xenobiotic transporter that may play an important role in the exclusion of xenobiotics from the brain. May be involved in brain-to-blood efflux (By similarity). When overexpressed, the transfected cells become resistant to mitoxantrone. Overexpression in bone marrow stem cells does not interfere with hematopoietic stem cell maturation and increases the number of SP cells.

Macaca mulatta (taxid: 9544)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	203
328712425	616	PREDICTED: ATP-binding cassette sub-fami	0.630	0.207	0.6	4e-51
91081723	603	PREDICTED: similar to abc transporter [T	0.630	0.212	0.570	3e-49
242014366	598	ABC transporter, putative [Pediculus hum	0.630	0.214	0.552	2e-46
157135702	599	abc transporter [Aedes aegypti] gi|10887	0.630	0.213	0.541	3e-45
158299528	656	AGAP008889-PA [Anopheles gambiae str. PE	0.650	0.201	0.528	5e-44
345495182	604	PREDICTED: ATP-binding cassette sub-fami	0.630	0.211	0.505	2e-43
405965622	2484	ATP-binding cassette sub-family G member	0.625	0.051	0.502	3e-43
312374623	950	hypothetical protein AND_15710 [Anophele	0.630	0.134	0.517	4e-43
170030294	608	abc transporter [Culex quinquefasciatus]	0.650	0.217	0.522	9e-43
345479546	665	PREDICTED: ATP-binding cassette sub-fami	0.630	0.192	0.511	9e-43

>gi|328712425|ref|XP_001947776.2| PREDICTED: ATP-binding cassette sub-family G member 1-like isoform 1 [Acyrthosiphon pisum] gi|328712427|ref|XP_003244809.1| PREDICTED: ATP-binding cassette sub-family G member 1-like isoform 2 [Acyrthosiphon pisum]

 Score =  206 bits (525), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 102/170 (60%), Positives = 119/170 (70%), Gaps = 42/170 (24%)

Query: 34  LVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQC 93
           +++DILD+IGL  S HT CGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDS S++QC
Sbjct: 154 VIEDILDSIGLSGSLHTKCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSTSSHQC 213

Query: 94  VAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTI 153
           V++LK LA+GGRT+VCTIHQPSA+ +EM D                              
Sbjct: 214 VSILKGLAKGGRTVVCTIHQPSASTYEMFD------------------------------ 243

Query: 154 HQPSATIFEMVDHLYVIAEGHCVYKGSSANTIPYLQTIGLHCPQYHNPAD 203
                       H+Y++AEGHCVY+GSS NTIPYLQTIGL+CPQYHNPAD
Sbjct: 244 ------------HVYIMAEGHCVYQGSSQNTIPYLQTIGLNCPQYHNPAD 281

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91081723|ref|XP_971735.1| PREDICTED: similar to abc transporter [Tribolium castaneum] gi|270005067|gb|EFA01515.1| hypothetical protein TcasGA2_TC007074 [Tribolium castaneum]

 Score =  200 bits (508), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 97/170 (57%), Positives = 115/170 (67%), Gaps = 42/170 (24%)

Query: 34  LVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQC 93
           L+DDILDT+GL  +K T C RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDS+S+ QC
Sbjct: 139 LIDDILDTLGLSTAKDTRCQRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSSSSAQC 198

Query: 94  VAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTI 153
           ++MLK LARGGRTI+CTIHQPSAT++EM D                              
Sbjct: 199 ISMLKELARGGRTIICTIHQPSATLYEMFD------------------------------ 228

Query: 154 HQPSATIFEMVDHLYVIAEGHCVYKGSSANTIPYLQTIGLHCPQYHNPAD 203
                       H+YV+AEG C+Y+G+S NT+ YL +IG +CPQYHNPAD
Sbjct: 229 ------------HVYVMAEGKCIYQGASQNTVTYLSSIGFNCPQYHNPAD 266

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242014366|ref|XP_002427862.1| ABC transporter, putative [Pediculus humanus corporis] gi|212512331|gb|EEB15124.1| ABC transporter, putative [Pediculus humanus corporis]

 Score =  191 bits (485), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 94/170 (55%), Positives = 114/170 (67%), Gaps = 42/170 (24%)

Query: 34  LVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQC 93
           L+D+IL ++GL  S+ T C  LSGGQ+KRLS+ALELIDNPP+MFLDEPTTGLDS+S+ QC
Sbjct: 136 LIDNILQSLGLFSSEQTKCHLLSGGQRKRLSVALELIDNPPVMFLDEPTTGLDSSSSLQC 195

Query: 94  VAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTI 153
           +  LKALA+GGRTIVCTIHQPSA+I+EM D                              
Sbjct: 196 IKALKALAKGGRTIVCTIHQPSASIYEMFD------------------------------ 225

Query: 154 HQPSATIFEMVDHLYVIAEGHCVYKGSSANTIPYLQTIGLHCPQYHNPAD 203
                       H+YV+AEGHCVY+GSS NT+PYL ++GL CPQYHNPAD
Sbjct: 226 ------------HVYVLAEGHCVYQGSSHNTVPYLLSVGLTCPQYHNPAD 263

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157135702|ref|XP_001663554.1| abc transporter [Aedes aegypti] gi|108870153|gb|EAT34378.1| AAEL013372-PA [Aedes aegypti]

 Score =  187 bits (474), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 92/170 (54%), Positives = 112/170 (65%), Gaps = 42/170 (24%)

Query: 34  LVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQC 93
           L+D+ILDT+ L  +K T CG LSGGQKKRLSIALELIDNPP++FLDEPTTGLDS+S+   
Sbjct: 112 LIDNILDTLHLKFTKLTRCGNLSGGQKKRLSIALELIDNPPVLFLDEPTTGLDSSSSLYT 171

Query: 94  VAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTI 153
           + +L+ LAR GRTIVCTIHQPSAT+FEM D                              
Sbjct: 172 IKLLQGLAREGRTIVCTIHQPSATVFEMFD------------------------------ 201

Query: 154 HQPSATIFEMVDHLYVIAEGHCVYKGSSANTIPYLQTIGLHCPQYHNPAD 203
                       H+YV+AEGHCVY+GS+ NT+PYL+++GL CPQYHN AD
Sbjct: 202 ------------HVYVLAEGHCVYQGSALNTVPYLRSVGLQCPQYHNAAD 239

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158299528|ref|XP_319635.4| AGAP008889-PA [Anopheles gambiae str. PEST] gi|157013561|gb|EAA14886.4| AGAP008889-PA [Anopheles gambiae str. PEST]

 Score =  182 bits (463), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 92/174 (52%), Positives = 112/174 (64%), Gaps = 42/174 (24%)

Query: 30  DTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNS 89
           + + LVD ILDT+ L   K T CG LSGGQ+KRLSIALELIDNPPI+FLDEPTTGLDS+S
Sbjct: 95  EKLRLVDKILDTLHLSYCKQTRCGSLSGGQRKRLSIALELIDNPPILFLDEPTTGLDSSS 154

Query: 90  TNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTI 149
           +   + +L+ LAR GRTIVCTIHQPSAT++EM D                          
Sbjct: 155 SLYTIKLLQGLAREGRTIVCTIHQPSATVYEMFD-------------------------- 188

Query: 150 VCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTIPYLQTIGLHCPQYHNPAD 203
                           H+YV+AEGHCVY+GS+ NT+PYL+++GLHCP YHN AD
Sbjct: 189 ----------------HVYVLAEGHCVYQGSALNTVPYLRSVGLHCPAYHNAAD 226

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345495182|ref|XP_003427452.1| PREDICTED: ATP-binding cassette sub-family G member 1-like isoform 1 [Nasonia vitripennis] gi|345495184|ref|XP_003427453.1| PREDICTED: ATP-binding cassette sub-family G member 1-like isoform 2 [Nasonia vitripennis] gi|345495186|ref|XP_003427454.1| PREDICTED: ATP-binding cassette sub-family G member 1-like isoform 3 [Nasonia vitripennis]

 Score =  181 bits (459), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 86/170 (50%), Positives = 111/170 (65%), Gaps = 42/170 (24%)

Query: 34  LVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQC 93
           ++DD+L+ + L  +K T C RLSGGQ+KRLSIALEL+DNPP+MFLDEPTTGLD +++ QC
Sbjct: 138 VIDDVLEILDLGKAKETRCDRLSGGQRKRLSIALELVDNPPVMFLDEPTTGLDYSASLQC 197

Query: 94  VAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTI 153
           +AML+ LARGGRTI+CTIHQPSATI+EM D                              
Sbjct: 198 MAMLQGLARGGRTIICTIHQPSATIYEMFD------------------------------ 227

Query: 154 HQPSATIFEMVDHLYVIAEGHCVYKGSSANTIPYLQTIGLHCPQYHNPAD 203
                       H+Y++AEG CVY+G + NT+ YL+ +GL CP+YHNPAD
Sbjct: 228 ------------HVYMLAEGRCVYQGDAKNTVEYLRRLGLSCPKYHNPAD 265

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|405965622|gb|EKC30984.1| ATP-binding cassette sub-family G member 1 [Crassostrea gigas]

 Score =  180 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 85/169 (50%), Positives = 109/169 (64%), Gaps = 42/169 (24%)

Query: 35   VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
            VD+ILDT+GL+ +K T    LSGGQ+KRLSIALEL++NPP+MF DEPT+GLDS S  QCV
Sbjct: 1973 VDEILDTLGLLETKKTRTSNLSGGQRKRLSIALELVNNPPLMFFDEPTSGLDSASCFQCV 2032

Query: 95   AMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIH 154
            ++LK+LA GGRTI+CTIHQPSA +FEM DH                              
Sbjct: 2033 SLLKSLAAGGRTIICTIHQPSAKLFEMFDH------------------------------ 2062

Query: 155  QPSATIFEMVDHLYVIAEGHCVYKGSSANTIPYLQTIGLHCPQYHNPAD 203
                        LY++AEG+C+Y+G++ + +PYL + GL CPQYHNPAD
Sbjct: 2063 ------------LYMLAEGNCIYRGTTKDLVPYLSSQGLMCPQYHNPAD 2099

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|312374623|gb|EFR22137.1| hypothetical protein AND_15710 [Anopheles darlingi]

 Score =  180 bits (456), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 88/170 (51%), Positives = 111/170 (65%), Gaps = 42/170 (24%)

Query: 34  LVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQC 93
           L+D+ILDT+ L   K T CG LSGGQ+KRLSIALELIDNPPI+FLDEPTTGLDS+S+   
Sbjct: 472 LIDNILDTLHLSFCKQTRCGSLSGGQRKRLSIALELIDNPPILFLDEPTTGLDSSSSLYT 531

Query: 94  VAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTI 153
           + +L+ LAR GRTIVCTIHQPSAT++EM D                              
Sbjct: 532 IKLLQGLAREGRTIVCTIHQPSATVYEMFD------------------------------ 561

Query: 154 HQPSATIFEMVDHLYVIAEGHCVYKGSSANTIPYLQTIGLHCPQYHNPAD 203
                       H+YV+A+G+CVY+G++ NT+PYL+++GLHCP YHN AD
Sbjct: 562 ------------HVYVLADGNCVYQGTALNTVPYLRSVGLHCPPYHNAAD 599

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170030294|ref|XP_001843024.1| abc transporter [Culex quinquefasciatus] gi|167866916|gb|EDS30299.1| abc transporter [Culex quinquefasciatus]

 Score =  179 bits (453), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 91/174 (52%), Positives = 110/174 (63%), Gaps = 42/174 (24%)

Query: 30  DTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNS 89
           D   L+D+ILDT+ L  +K T CG LSGGQKKRLSIALELIDNPP++FLDEPTTGLDS+S
Sbjct: 106 DKQRLIDNILDTLHLKFTKLTRCGNLSGGQKKRLSIALELIDNPPVLFLDEPTTGLDSSS 165

Query: 90  TNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTI 149
           +   + +L+ LAR GRTIVCTIHQPSAT+FE                             
Sbjct: 166 SLYTIKLLQRLAREGRTIVCTIHQPSATVFE----------------------------- 196

Query: 150 VCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTIPYLQTIGLHCPQYHNPAD 203
                        M D +Y +A+GHCVY+GSS NT+PYL ++GL CPQYHN AD
Sbjct: 197 -------------MFDLVYALADGHCVYQGSSLNTVPYLHSVGLQCPQYHNAAD 237

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345479546|ref|XP_001607392.2| PREDICTED: ATP-binding cassette sub-family G member 1-like [Nasonia vitripennis]

 Score =  179 bits (453), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 87/170 (51%), Positives = 107/170 (62%), Gaps = 42/170 (24%)

Query: 34  LVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQC 93
           +V+ IL  +GL  S+ TL G+LSGGQKKRL+IALELI NPPIMF DEPT+GLDS S+ QC
Sbjct: 175 IVNMILQEMGLWASRTTLSGKLSGGQKKRLAIALELISNPPIMFFDEPTSGLDSVSSRQC 234

Query: 94  VAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTI 153
           + +LK+LAR GRT+VCTIHQPSAT+F+M+DHL                            
Sbjct: 235 IGLLKSLAREGRTVVCTIHQPSATLFDMIDHL---------------------------- 266

Query: 154 HQPSATIFEMVDHLYVIAEGHCVYKGSSANTIPYLQTIGLHCPQYHNPAD 203
                         YV+AEG C Y G + N +PYL ++GLHCP YHNPAD
Sbjct: 267 --------------YVVAEGQCAYAGGARNLVPYLNSLGLHCPTYHNPAD 302

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	203
FB|FBgn0020762	832	Atet "ABC transporter expresse	0.655	0.159	0.514	1.9e-28
FB|FBgn0025683	699	CG3164 [Drosophila melanogaste	0.615	0.178	0.507	4.4e-28
UNIPROTKB|A7Z044	646	ABCG4 "Uncharacterized protein	0.655	0.205	0.5	1.2e-27
UNIPROTKB|E2QTR8	646	ABCG4 "Uncharacterized protein	0.655	0.205	0.5	2e-27
UNIPROTKB|Q9H172	646	ABCG4 "ATP-binding cassette su	0.655	0.205	0.5	2e-27
UNIPROTKB|F1SAH2	646	ABCG4 "Uncharacterized protein	0.655	0.205	0.5	2e-27
FB|FBgn0031220	677	CG4822 [Drosophila melanogaste	0.497	0.149	0.543	1.3e-26
UNIPROTKB|E1BYW4	644	ABCG1 "Uncharacterized protein	0.527	0.166	0.559	1.9e-26
ZFIN|ZDB-GENE-070424-84	673	abcg1 "ATP-binding cassette, s	0.655	0.197	0.478	2.7e-26
UNIPROTKB|E1BDU6	665	ABCG1 "Uncharacterized protein	0.694	0.212	0.472	4.4e-26

FB|FBgn0020762 Atet "ABC transporter expressed in trachea" [Drosophila melanogaster (taxid:7227)]

 Score = 327 (120.2 bits), Expect = 1.9e-28, P = 1.9e-28
 Identities = 72/140 (51%), Positives = 98/140 (70%)

Query:    34 LVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQC 93
             +V++IL+TIGL  S +TL   LSGGQ+KRLSIALEL++NPP+MF DEPT+GLDS++  Q 
Sbjct:   263 VVEEILETIGLKESVNTLTCNLSGGQRKRLSIALELVNNPPVMFFDEPTSGLDSSTCFQL 322

Query:    94 VAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCV--AMLKALARGGRTI-- 149
             +++L++LARGGRTIVCTIHQPSA +FE  DHL L +    QCV    +K L     ++  
Sbjct:   323 ISLLRSLARGGRTIVCTIHQPSARLFEKFDHLYLLAQG--QCVYEGRVKGLVPYLSSLGY 380

Query:   150 VC-TIHQPSATIFEMVDHLY 168
              C + H P+  + E+    Y
Sbjct:   381 ECPSYHNPADYVLEVASGEY 400

GO:0043190 "ATP-binding cassette (ABC) transporter complex" evidence=ISS

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0005215 "transporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0022008 "neurogenesis" evidence=IMP

FB|FBgn0025683 CG3164 [Drosophila melanogaster (taxid:7227)]

 Score = 322 (118.4 bits), Expect = 4.4e-28, P = 4.4e-28
 Identities = 70/138 (50%), Positives = 92/138 (66%)

Query:    34 LVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQC 93
             ++DDIL T+ L   ++T+   LSGGQKKRLSIALEL+ NPPIMF DEPT+GLDS++  QC
Sbjct:   165 MIDDILLTLSLSEHRYTMTRNLSGGQKKRLSIALELVSNPPIMFFDEPTSGLDSSTCFQC 224

Query:    94 VAMLKALARGGRTIVCTIHQPSATIFEMVDHL-----G--LDSNSTNQCVAMLKALARGG 146
             + +LK LA GGRT++CTIHQPSA +FEM D L     G  +   ST Q V  L  L    
Sbjct:   225 IHLLKMLAAGGRTVICTIHQPSARLFEMFDQLYTLADGQCVYQGSTKQLVPFLSTL---- 280

Query:   147 RTIVC-TIHQPSATIFEM 163
               + C + H P++ + E+
Sbjct:   281 -NLECPSYHNPASYVIEV 297

GO:0043190 "ATP-binding cassette (ABC) transporter complex" evidence=ISS

GO:0005215 "transporter activity" evidence=ISS

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|A7Z044 ABCG4 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 317 (116.6 bits), Expect = 1.2e-27, P = 1.2e-27
 Identities = 70/140 (50%), Positives = 93/140 (66%)

Query:    34 LVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQC 93
             LV +IL  +GL+   HT    LSGGQ+KRL+IALEL++NPP+MF DEPT+GLDS S+ Q 
Sbjct:   180 LVTEILTALGLLSCSHTRTALLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASSFQV 239

Query:    94 VAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCV--AMLKALAR--GGRTI 149
              +++K+LA+GGRTI+CTIHQPSA +FEM D L + S    QC+   M+  L     G  +
Sbjct:   240 ASLMKSLAQGGRTIICTIHQPSAKLFEMFDKLYILSQG--QCIFKGMVTNLIPYLKGLGL 297

Query:   150 VC-TIHQPSATIFEMVDHLY 168
              C T H P+  I E+    Y
Sbjct:   298 HCPTYHNPADFIIEVASGEY 317

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E2QTR8 ABCG4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 315 (115.9 bits), Expect = 2.0e-27, P = 2.0e-27
 Identities = 70/140 (50%), Positives = 93/140 (66%)

Query:    34 LVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQC 93
             LV +IL  +GL+   HT    LSGGQ+KRL+IALEL++NPP+MF DEPT+GLDS S  Q 
Sbjct:   180 LVTEILTALGLMSCSHTRTALLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASCCQV 239

Query:    94 VAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCV--AMLKALAR--GGRTI 149
             V+++K+LA+GGRTI+CTIHQPSA +FEM D L + S    QC+   ++  L     G  +
Sbjct:   240 VSLMKSLAQGGRTIICTIHQPSAKLFEMFDKLYILSQG--QCIFKGVVTNLIPYLKGLGL 297

Query:   150 VC-TIHQPSATIFEMVDHLY 168
              C T H P+  I E+    Y
Sbjct:   298 HCPTYHNPADFIIEVASGEY 317

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q9H172 ABCG4 "ATP-binding cassette sub-family G member 4" [Homo sapiens (taxid:9606)]

 Score = 315 (115.9 bits), Expect = 2.0e-27, P = 2.0e-27
 Identities = 70/140 (50%), Positives = 93/140 (66%)

Query:    34 LVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQC 93
             LV +IL  +GL+   HT    LSGGQ+KRL+IALEL++NPP+MF DEPT+GLDS S  Q 
Sbjct:   180 LVTEILTALGLMSCSHTRTALLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASCFQV 239

Query:    94 VAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCV--AMLKALAR--GGRTI 149
             V+++K+LA+GGRTI+CTIHQPSA +FEM D L + S    QC+   ++  L     G  +
Sbjct:   240 VSLMKSLAQGGRTIICTIHQPSAKLFEMFDKLYILSQG--QCIFKGVVTNLIPYLKGLGL 297

Query:   150 VC-TIHQPSATIFEMVDHLY 168
              C T H P+  I E+    Y
Sbjct:   298 HCPTYHNPADFIIEVASGEY 317

GO:0016887 "ATPase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=TAS

GO:0017127 "cholesterol transporter activity" evidence=TAS

GO:0055085 "transmembrane transport" evidence=TAS

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0033344 "cholesterol efflux" evidence=TAS

UNIPROTKB|F1SAH2 ABCG4 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 315 (115.9 bits), Expect = 2.0e-27, P = 2.0e-27
 Identities = 70/140 (50%), Positives = 93/140 (66%)

Query:    34 LVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQC 93
             LV +IL  +GL+   HT    LSGGQ+KRL+IALEL++NPP+MF DEPT+GLDS S  Q 
Sbjct:   180 LVTEILTALGLMSCSHTRTALLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASCFQV 239

Query:    94 VAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCV--AMLKALAR--GGRTI 149
             V+++K+LA+GGRTI+CTIHQPSA +FEM D L + S    QC+   ++  L     G  +
Sbjct:   240 VSLMKSLAQGGRTIICTIHQPSAKLFEMFDKLYILSQG--QCIFKGVVTNLIPYLKGLGL 297

Query:   150 VC-TIHQPSATIFEMVDHLY 168
              C T H P+  I E+    Y
Sbjct:   298 HCPTYHNPADFIIEVASGEY 317

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

FB|FBgn0031220 CG4822 [Drosophila melanogaster (taxid:7227)]

 Score = 296 (109.3 bits), Expect = 1.3e-26, Sum P(2) = 1.3e-26
 Identities = 56/103 (54%), Positives = 81/103 (78%)

Query:    34 LVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQC 93
             ++D+IL  + L  + +T+  +LSGG++KRL IALEL++NPP++FLDEPTTGLD  S++QC
Sbjct:   173 VIDEILGMLRLKDTLNTMAQKLSGGERKRLCIALELVNNPPVIFLDEPTTGLDDLSSSQC 232

Query:    94 VAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCV 136
             +A+LK LA GGRT++C+IH PSA IFEM+D + + +    QCV
Sbjct:   233 IALLKVLAAGGRTVICSIHTPSAKIFEMLDAVYVLAEG--QCV 273

GO:0043190 "ATP-binding cassette (ABC) transporter complex" evidence=ISS

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0005215 "transporter activity" evidence=ISS

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|E1BYW4 ABCG1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 306 (112.8 bits), Expect = 1.9e-26, P = 1.9e-26
 Identities = 61/109 (55%), Positives = 82/109 (75%)

Query:    34 LVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQC 93
             +V +IL  +GL+   +T  G LSGGQ+KRL+IALEL++NPP+MF DEPT+GLDS S  Q 
Sbjct:   174 MVKEILTALGLLTCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASCFQV 233

Query:    94 VAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKAL 142
             V+++KALA+GGR+I+CTIHQPSA +FE+ D L + S    QC+   K L
Sbjct:   234 VSLMKALAQGGRSIICTIHQPSAKLFELFDQLYVLSQG--QCIYRGKVL 280

GO:0016021 "integral to membrane" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005548 "phospholipid transporter activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008203 "cholesterol metabolic process" evidence=IEA

GO:0009897 "external side of plasma membrane" evidence=IEA

GO:0010872 "regulation of cholesterol esterification" evidence=IEA

GO:0010875 "positive regulation of cholesterol efflux" evidence=IEA

GO:0010888 "negative regulation of lipid storage" evidence=IEA

GO:0017127 "cholesterol transporter activity" evidence=IEA

GO:0019534 "toxin transporter activity" evidence=IEA

GO:0032367 "intracellular cholesterol transport" evidence=IEA

GO:0033344 "cholesterol efflux" evidence=IEA

GO:0033700 "phospholipid efflux" evidence=IEA

GO:0033993 "response to lipid" evidence=IEA

GO:0034041 "sterol-transporting ATPase activity" evidence=IEA

GO:0034374 "low-density lipoprotein particle remodeling" evidence=IEA

GO:0034375 "high-density lipoprotein particle remodeling" evidence=IEA

GO:0034436 "glycoprotein transport" evidence=IEA

GO:0034437 "glycoprotein transporter activity" evidence=IEA

GO:0042632 "cholesterol homeostasis" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0042987 "amyloid precursor protein catabolic process" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0043691 "reverse cholesterol transport" evidence=IEA

GO:0045542 "positive regulation of cholesterol biosynthetic process" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0055037 "recycling endosome" evidence=IEA

GO:0055091 "phospholipid homeostasis" evidence=IEA

GO:0055099 "response to high density lipoprotein particle stimulus" evidence=IEA

ZFIN|ZDB-GENE-070424-84 abcg1 "ATP-binding cassette, sub-family G (WHITE), member 1" [Danio rerio (taxid:7955)]

 Score = 305 (112.4 bits), Expect = 2.7e-26, P = 2.7e-26
 Identities = 67/140 (47%), Positives = 93/140 (66%)

Query:    34 LVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQC 93
             +V +IL  +GL+    T    LSGGQ+KRL+IALEL++NPP+MF DEPT+GLDS+S  Q 
Sbjct:   203 MVREILTALGLLECAKTRTSHLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSSSCFQV 262

Query:    94 VAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCV--AMLKALARGGRTI-- 149
             V+++KALA+GGRT++CTIHQPSA +FE+ D L + S    QC+    + +L    R +  
Sbjct:   263 VSLMKALAQGGRTVICTIHQPSAKVFELFDKLYVLSQG--QCIYRGKVSSLIPYLRDLGL 320

Query:   150 VC-TIHQPSATIFEMVDHLY 168
              C T H P+  I E+    Y
Sbjct:   321 SCPTYHNPADFIMEVASGEY 340

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|E1BDU6 ABCG1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 303 (111.7 bits), Expect = 4.4e-26, P = 4.4e-26
 Identities = 70/148 (47%), Positives = 94/148 (63%)

Query:    34 LVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQC 93
             +V +IL  +GL+   +T  G LSGGQ+KRL+IALEL++NPP+MF DEPT+GLDS S  Q 
Sbjct:   195 MVKEILTALGLLSCANTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASCFQV 254

Query:    94 VAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKA--LARGGRTIV- 150
             V+++K LA+GGR+I+CTIHQPSA +FE+ D L + S    QCV   K   L    R +  
Sbjct:   255 VSLMKGLAQGGRSIICTIHQPSAKLFELFDQLYVLSQG--QCVYRGKVSNLVPYLRDLGL 312

Query:   151 -C-TIHQPSATIFEMVDHLYVIAEGHCV 176
              C T H P+  + E+    Y    G  V
Sbjct:   313 NCPTYHNPADFVMEVASGEYGDQNGRLV 340

GO:0055099 "response to high density lipoprotein particle stimulus" evidence=IEA

GO:0055091 "phospholipid homeostasis" evidence=IEA

GO:0055037 "recycling endosome" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0045542 "positive regulation of cholesterol biosynthetic process" evidence=IEA

GO:0043691 "reverse cholesterol transport" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0042987 "amyloid precursor protein catabolic process" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0042632 "cholesterol homeostasis" evidence=IEA

GO:0034437 "glycoprotein transporter activity" evidence=IEA

GO:0034436 "glycoprotein transport" evidence=IEA

GO:0034375 "high-density lipoprotein particle remodeling" evidence=IEA

GO:0034374 "low-density lipoprotein particle remodeling" evidence=IEA

GO:0034041 "sterol-transporting ATPase activity" evidence=IEA

GO:0033993 "response to lipid" evidence=IEA

GO:0033700 "phospholipid efflux" evidence=IEA

GO:0033344 "cholesterol efflux" evidence=IEA

GO:0032367 "intracellular cholesterol transport" evidence=IEA

GO:0019534 "toxin transporter activity" evidence=IEA

GO:0017127 "cholesterol transporter activity" evidence=IEA

GO:0010888 "negative regulation of lipid storage" evidence=IEA

GO:0010875 "positive regulation of cholesterol efflux" evidence=IEA

GO:0010872 "regulation of cholesterol esterification" evidence=IEA

GO:0009897 "external side of plasma membrane" evidence=IEA

GO:0008203 "cholesterol metabolic process" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005548 "phospholipid transporter activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	203
TIGR00955	617	TIGR00955, 3a01204, The Eye Pigment Precursor Tran	5e-42
cd03213	194	cd03213, ABCG_EPDR, Eye pigment and drug resistanc	1e-34
cd03232	192	cd03232, ABCG_PDR_domain2, Second domain of the pl	1e-29
cd03234	226	cd03234, ABCG_White, White pigment protein homolog	6e-28
TIGR00956	1394	TIGR00956, 3a01205, Pleiotropic Drug Resistance (P	1e-24
COG1131	293	COG1131, CcmA, ABC-type multidrug transport system	2e-23
PLN03211	659	PLN03211, PLN03211, ABC transporter G-25; Provisio	5e-22
PLN03140	1470	PLN03140, PLN03140, ABC transporter G family membe	1e-21
cd00267	157	cd00267, ABC_ATPase, ATP-binding cassette transpor	5e-19
cd03225	211	cd03225, ABC_cobalt_CbiO_domain1, First domain of	1e-18
cd03263	220	cd03263, ABC_subfamily_A, ATP-binding cassette dom	8e-18
COG1121	254	COG1121, ZnuC, ABC-type Mn/Zn transport systems, A	3e-16
cd03230	173	cd03230, ABC_DR_subfamily_A, ATP-binding cassette	3e-16
cd03233	202	cd03233, ABCG_PDR_domain1, First domain of the ple	1e-15
cd03235	213	cd03235, ABC_Metallic_Cations, ATP-binding cassett	1e-15
TIGR00956	1394	TIGR00956, 3a01205, Pleiotropic Drug Resistance (P	2e-15
cd03256	241	cd03256, ABC_PhnC_transporter, ATP-binding cassett	1e-14
TIGR03375	694	TIGR03375, type_I_sec_LssB, type I secretion syste	3e-14
cd03219	236	cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas	4e-14
PLN03140	1470	PLN03140, PLN03140, ABC transporter G family membe	5e-14
cd03231	201	cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog	5e-14
TIGR01166	190	TIGR01166, cbiO, cobalt transport protein ATP-bind	6e-14
cd03265	220	cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist	7e-14
cd03255	218	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse	8e-14
TIGR02982	220	TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi	1e-13
cd03261	235	cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca	1e-13
TIGR01189	198	TIGR01189, ccmA, heme ABC exporter, ATP-binding pr	1e-13
cd03214	180	cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind	2e-13
cd03262	213	cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai	2e-13
COG1122	235	COG1122, CbiO, ABC-type cobalt transport system, A	2e-13
TIGR03608	206	TIGR03608, L_ocin_972_ABC, putative bacteriocin ex	3e-13
TIGR01188	302	TIGR01188, drrA, daunorubicin resistance ABC trans	3e-13
TIGR02673	214	TIGR02673, FtsE, cell division ATP-binding protein	3e-13
PRK13639	275	PRK13639, cbiO, cobalt transporter ATP-binding sub	3e-13
COG1120	258	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore	4e-13
cd03226	205	cd03226, ABC_cobalt_CbiO_domain2, Second domain of	6e-13
cd03292	214	cd03292, ABC_FtsE_transporter, ATP-binding cassett	9e-13
cd03229	178	cd03229, ABC_Class3, ATP-binding cassette domain o	1e-12
COG4133	209	COG4133, CcmA, ABC-type transport system involved	1e-12
cd03245	220	cd03245, ABCC_bacteriocin_exporters, ATP-binding c	1e-12
cd03268	208	cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c	1e-12
TIGR03771	223	TIGR03771, anch_rpt_ABC, anchored repeat-type ABC	1e-12
COG1136	226	COG1136, SalX, ABC-type antimicrobial peptide tran	2e-12
TIGR02315	243	TIGR02315, ABC_phnC, phosphonate ABC transporter,	2e-12
COG1126	240	COG1126, GlnQ, ABC-type polar amino acid transport	3e-12
cd03228	171	cd03228, ABCC_MRP_Like, ATP-binding cassette domai	5e-12
cd03264	211	cd03264, ABC_drug_resistance_like, ABC-type multid	5e-12
PRK13539	207	PRK13539, PRK13539, cytochrome c biogenesis protei	7e-12
COG4598	256	COG4598, HisP, ABC-type histidine transport system	7e-12
TIGR01257	2272	TIGR01257, rim_protein, retinal-specific rim ABC t	7e-12
COG2274	709	COG2274, SunT, ABC-type bacteriocin/lantibiotic ex	1e-11
cd03249	238	cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett	1e-11
PRK13537	306	PRK13537, PRK13537, nodulation ABC transporter Nod	2e-11
PRK13536	340	PRK13536, PRK13536, nodulation factor exporter sub	2e-11
cd03253	236	cd03253, ABCC_ATM1_transporter, ATP-binding casset	3e-11
COG4674	249	COG4674, COG4674, Uncharacterized ABC-type transpo	4e-11
TIGR03740	223	TIGR03740, galliderm_ABC, gallidermin-class lantib	5e-11
COG4987	573	COG4987, CydC, ABC-type transport system involved	5e-11
cd03258	233	cd03258, ABC_MetN_methionine_transporter, ATP-bind	5e-11
TIGR03411	242	TIGR03411, urea_trans_UrtD, urea ABC transporter,	6e-11
TIGR02203	571	TIGR02203, MsbA_lipidA, lipid A export permease/AT	7e-11
COG3638	258	COG3638, COG3638, ABC-type phosphate/phosphonate t	7e-11
COG0411	250	COG0411, LivG, ABC-type branched-chain amino acid	8e-11
TIGR01288	303	TIGR01288, nodI, ATP-binding ABC transporter famil	8e-11
TIGR02857	529	TIGR02857, CydD, thiol reductant ABC exporter, Cyd	1e-10
PRK13538	204	PRK13538, PRK13538, cytochrome c biogenesis protei	2e-10
PRK15056	272	PRK15056, PRK15056, manganese/iron transporter ATP	2e-10
cd03266	218	cd03266, ABC_NatA_sodium_exporter, ATP-binding cas	2e-10
pfam00005	119	pfam00005, ABC_tran, ABC transporter	2e-10
COG4555	245	COG4555, NatA, ABC-type Na+ transport system, ATPa	3e-10
TIGR01846	694	TIGR01846, type_I_sec_HlyB, type I secretion syste	4e-10
PRK13636	283	PRK13636, cbiO, cobalt transporter ATP-binding sub	4e-10
COG4988	559	COG4988, CydD, ABC-type transport system involved	5e-10
PRK10535	648	PRK10535, PRK10535, macrolide transporter ATP-bind	5e-10
cd03251	234	cd03251, ABCC_MsbA, ATP-binding cassette domain of	5e-10
COG1135	339	COG1135, AbcC, ABC-type metal ion transport system	5e-10
PRK09493	240	PRK09493, glnQ, glutamine ABC transporter ATP-bind	8e-10
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	8e-10
PRK13651	305	PRK13651, PRK13651, cobalt transporter ATP-binding	8e-10
COG4161	242	COG4161, ArtP, ABC-type arginine transport system,	9e-10
COG2884	223	COG2884, FtsE, Predicted ATPase involved in cell d	9e-10
COG0444	316	COG0444, DppD, ABC-type dipeptide/oligopeptide/nic	9e-10
TIGR02868	530	TIGR02868, CydC, thiol reductant ABC exporter, Cyd	1e-09
TIGR03522	301	TIGR03522, GldA_ABC_ATP, gliding motility-associat	1e-09
PRK11264	250	PRK11264, PRK11264, putative amino-acid ABC transp	1e-09
PRK13652	277	PRK13652, cbiO, cobalt transporter ATP-binding sub	2e-09
PRK13649	280	PRK13649, cbiO, cobalt transporter ATP-binding sub	2e-09
COG5265	497	COG5265, ATM1, ABC-type transport system involved	2e-09
TIGR02324	224	TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys	3e-09
cd03246	173	cd03246, ABCC_Protease_Secretion, ATP-binding cass	3e-09
COG1132	567	COG1132, MdlB, ABC-type multidrug transport system	3e-09
PRK11160	574	PRK11160, PRK11160, cysteine/glutathione ABC trans	3e-09
COG1123	539	COG1123, COG1123, ATPase components of various ABC	3e-09
PRK11124	242	PRK11124, artP, arginine transporter ATP-binding s	4e-09
cd03248	226	cd03248, ABCC_TAP, ATP-binding cassette domain of	4e-09
TIGR03258	362	TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans	5e-09
PRK10619	257	PRK10619, PRK10619, histidine/lysine/arginine/orni	5e-09
cd03224	222	cd03224, ABC_TM1139_LivF_branched, ATP-binding cas	6e-09
COG4181	228	COG4181, COG4181, Predicted ABC-type transport sys	7e-09
PRK11231	255	PRK11231, fecE, iron-dicitrate transporter ATP-bin	8e-09
COG1127	263	COG1127, Ttg2A, ABC-type transport system involved	8e-09
TIGR03864	236	TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi	8e-09
COG3840	231	COG3840, ThiQ, ABC-type thiamine transport system,	9e-09
TIGR02204	576	TIGR02204, MsbA_rel, ABC transporter, permease/ATP	1e-08
cd03257	228	cd03257, ABC_NikE_OppD_transporters, ATP-binding c	1e-08
TIGR02314	343	TIGR02314, ABC_MetN, D-methionine ABC transporter,	1e-08
PRK13657	588	PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra	1e-08
PRK14269	246	PRK14269, PRK14269, phosphate ABC transporter ATP-	1e-08
cd03267	236	cd03267, ABC_NatA_like, ATP-binding cassette domai	2e-08
cd03297	214	cd03297, ABC_ModC_molybdenum_transporter, ATP-bind	2e-08
PRK13638	271	PRK13638, cbiO, cobalt transporter ATP-binding sub	2e-08
COG1116	248	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon	2e-08
PRK13631	320	PRK13631, cbiO, cobalt transporter ATP-binding sub	2e-08
TIGR01842	544	TIGR01842, type_I_sec_PrtD, type I secretion syste	3e-08
PRK13646	286	PRK13646, cbiO, cobalt transporter ATP-binding sub	3e-08
PRK15134	529	PRK15134, PRK15134, microcin C ABC transporter ATP	3e-08
cd03298	211	cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin	3e-08
pfam13304	256	pfam13304, AAA_21, AAA domain	3e-08
cd03247	178	cd03247, ABCC_cytochrome_bd, ATP-binding cassette	3e-08
TIGR03265	353	TIGR03265, PhnT2, putative 2-aminoethylphosphonate	3e-08
cd03218	232	cd03218, ABC_YhbG, ATP-binding cassette component	3e-08
cd03252	237	cd03252, ABCC_Hemolysin, ATP-binding cassette doma	4e-08
COG4618	580	COG4618, ArpD, ABC-type protease/lipase transport	4e-08
PRK14247	250	PRK14247, PRK14247, phosphate ABC transporter ATP-	5e-08
PRK14275	286	PRK14275, PRK14275, phosphate ABC transporter ATP-	5e-08
PRK14262	250	PRK14262, PRK14262, phosphate ABC transporter ATP-	6e-08
PRK13641	287	PRK13641, cbiO, cobalt transporter ATP-binding sub	6e-08
cd03260	227	cd03260, ABC_PstB_phosphate_transporter, ATP-bindi	6e-08
COG3842	352	COG3842, PotA, ABC-type spermidine/putrescine tran	7e-08
TIGR03005	252	TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB	7e-08
PRK11174	588	PRK11174, PRK11174, cysteine/glutathione ABC trans	7e-08
cd03299	235	cd03299, ABC_ModC_like, ATP-binding cassette domai	7e-08
cd03259	213	cd03259, ABC_Carb_Solutes_like, ATP-binding casset	8e-08
TIGR00972	247	TIGR00972, 3a0107s01c2, phosphate ABC transporter,	8e-08
TIGR01277	213	TIGR01277, thiQ, thiamine ABC transporter, ATP-bin	9e-08
cd03269	210	cd03269, ABC_putative_ATPase, ATP-binding cassette	9e-08
COG1123	539	COG1123, COG1123, ATPase components of various ABC	1e-07
TIGR02211	221	TIGR02211, LolD_lipo_ex, lipoprotein releasing sys	1e-07
TIGR00958	711	TIGR00958, 3a01208, Conjugate Transporter-2 (CT2)	1e-07
PRK14267	253	PRK14267, PRK14267, phosphate ABC transporter ATP-	1e-07
PRK11153	343	PRK11153, metN, DL-methionine transporter ATP-bind	1e-07
PRK09536	402	PRK09536, btuD, corrinoid ABC transporter ATPase;	1e-07
COG1129	500	COG1129, MglA, ABC-type sugar transport system, AT	1e-07
PRK13643	288	PRK13643, cbiO, cobalt transporter ATP-binding sub	1e-07
PRK14258	261	PRK14258, PRK14258, phosphate ABC transporter ATP-	2e-07
PRK13647	274	PRK13647, cbiO, cobalt transporter ATP-binding sub	2e-07
PRK13634	290	PRK13634, cbiO, cobalt transporter ATP-binding sub	2e-07
PRK14250	241	PRK14250, PRK14250, phosphate ABC transporter ATP-	2e-07
PRK14274	259	PRK14274, PRK14274, phosphate ABC transporter ATP-	2e-07
PTZ00265	1466	PTZ00265, PTZ00265, multidrug resistance protein (	3e-07
cd03221	144	cd03221, ABCF_EF-3, ATP-binding cassette domain of	3e-07
COG0488	530	COG0488, Uup, ATPase components of ABC transporter	3e-07
COG4586	325	COG4586, COG4586, ABC-type uncharacterized transpo	3e-07
COG4172	534	COG4172, COG4172, ABC-type uncharacterized transpo	3e-07
PRK14271	276	PRK14271, PRK14271, phosphate ABC transporter ATP-	3e-07
COG1117	253	COG1117, PstB, ABC-type phosphate transport system	3e-07
PTZ00265	1466	PTZ00265, PTZ00265, multidrug resistance protein (	4e-07
COG0410	237	COG0410, LivF, ABC-type branched-chain amino acid	4e-07
COG1137	243	COG1137, YhbG, ABC-type (unclassified) transport s	4e-07
TIGR03797	686	TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste	5e-07
COG1119	257	COG1119, ModF, ABC-type molybdenum transport syste	5e-07
COG1124	252	COG1124, DppF, ABC-type dipeptide/oligopeptide/nic	6e-07
PRK14252	265	PRK14252, PRK14252, phosphate ABC transporter ATP-	8e-07
cd03227	162	cd03227, ABC_Class2, ATP-binding cassette domain o	9e-07
PRK11176	582	PRK11176, PRK11176, lipid transporter ATP-binding/	9e-07
TIGR01257	2272	TIGR01257, rim_protein, retinal-specific rim ABC t	1e-06
PRK13637	287	PRK13637, cbiO, cobalt transporter ATP-binding sub	1e-06
cd03294	269	cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette	1e-06
PRK14272	252	PRK14272, PRK14272, phosphate ABC transporter ATP-	1e-06
TIGR03796	710	TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste	1e-06
PRK14237	267	PRK14237, PRK14237, phosphate transporter ATP-bind	1e-06
PRK14255	252	PRK14255, PRK14255, phosphate ABC transporter ATP-	1e-06
PRK13543	214	PRK13543, PRK13543, cytochrome c biogenesis protei	2e-06
COG1125	309	COG1125, OpuBA, ABC-type proline/glycine betaine t	2e-06
PRK14245	250	PRK14245, PRK14245, phosphate ABC transporter ATP-	2e-06
PRK10790	592	PRK10790, PRK10790, putative multidrug transporter	2e-06
PRK00635	1809	PRK00635, PRK00635, excinuclease ABC subunit A; Pr	2e-06
cd03254	229	cd03254, ABCC_Glucan_exporter_like, ATP-binding ca	2e-06
COG0488	530	COG0488, Uup, ATPase components of ABC transporter	3e-06
PRK14270	251	PRK14270, PRK14270, phosphate ABC transporter ATP-	3e-06
PRK14246	257	PRK14246, PRK14246, phosphate ABC transporter ATP-	3e-06
TIGR01192	585	TIGR01192, chvA, glucan exporter ATP-binding prote	3e-06
PRK09984	262	PRK09984, PRK09984, phosphonate/organophosphate es	3e-06
cd03240	204	cd03240, ABC_Rad50, ATP-binding cassette domain of	3e-06
cd03215	182	cd03215, ABC_Carb_Monos_II, Second domain of the A	3e-06
PRK14248	268	PRK14248, PRK14248, phosphate ABC transporter ATP-	3e-06
TIGR03269	520	TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc	3e-06
COG1129	500	COG1129, MglA, ABC-type sugar transport system, AT	4e-06
COG4172	534	COG4172, COG4172, ABC-type uncharacterized transpo	4e-06
TIGR01187	325	TIGR01187, potA, spermidine/putrescine ABC transpo	4e-06
cd03293	220	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c	4e-06
PRK11629	233	PRK11629, lolD, lipoprotein transporter ATP-bindin	4e-06
PRK14240	250	PRK14240, PRK14240, phosphate transporter ATP-bind	4e-06
TIGR01184	230	TIGR01184, ntrCD, nitrate transport ATP-binding su	4e-06
PRK10908	222	PRK10908, PRK10908, cell division protein FtsE; Pr	5e-06
COG4608	268	COG4608, AppF, ABC-type oligopeptide transport sys	5e-06
COG3839	338	COG3839, MalK, ABC-type sugar transport systems, A	5e-06
PRK13640	282	PRK13640, cbiO, cobalt transporter ATP-binding sub	5e-06
PRK14244	251	PRK14244, PRK14244, phosphate ABC transporter ATP-	6e-06
TIGR03410	230	TIGR03410, urea_trans_UrtE, urea ABC transporter,	6e-06
COG4175	386	COG4175, ProV, ABC-type proline/glycine betaine tr	6e-06
cd03216	163	cd03216, ABC_Carb_Monos_I, First domain of the ATP	6e-06
TIGR03873	256	TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra	6e-06
cd03300	232	cd03300, ABC_PotA_N, ATP-binding cassette domain o	6e-06
TIGR02142	354	TIGR02142, modC_ABC, molybdenum ABC transporter, A	7e-06
PRK14254	285	PRK14254, PRK14254, phosphate ABC transporter ATP-	7e-06
cd03238	176	cd03238, ABC_UvrA, ATP-binding cassette domain of	7e-06
PRK13644	274	PRK13644, cbiO, cobalt transporter ATP-binding sub	7e-06
PRK14243	264	PRK14243, PRK14243, phosphate transporter ATP-bind	7e-06
PRK15134	529	PRK15134, PRK15134, microcin C ABC transporter ATP	8e-06
PRK14253	249	PRK14253, PRK14253, phosphate ABC transporter ATP-	8e-06
PRK09700	510	PRK09700, PRK09700, D-allose transporter ATP-bindi	1e-05
PRK11701	258	PRK11701, phnK, phosphonate C-P lyase system prote	1e-05
cd03223	166	cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset	1e-05
PRK10575	265	PRK10575, PRK10575, iron-hydroxamate transporter A	1e-05
COG4619	223	COG4619, COG4619, ABC-type uncharacterized transpo	1e-05
COG4778	235	COG4778, PhnL, ABC-type phosphonate transport syst	1e-05
cd03290	218	cd03290, ABCC_SUR1_N, ATP-binding cassette domain	1e-05
PRK14260	259	PRK14260, PRK14260, phosphate ABC transporter ATP-	1e-05
TIGR02323	253	TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys	1e-05
PRK10789	569	PRK10789, PRK10789, putative multidrug transporter	1e-05
PRK14239	252	PRK14239, PRK14239, phosphate transporter ATP-bind	1e-05
TIGR01186	363	TIGR01186, proV, glycine betaine/L-proline transpo	1e-05
TIGR03719	552	TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot	2e-05
PRK14268	258	PRK14268, PRK14268, phosphate ABC transporter ATP-	2e-05
TIGR02633	500	TIGR02633, xylG, D-xylose ABC transporter, ATP-bin	2e-05
COG4559	259	COG4559, COG4559, ABC-type hemin transport system,	2e-05
PRK10982	491	PRK10982, PRK10982, galactose/methyl galaxtoside t	2e-05
PRK10253	265	PRK10253, PRK10253, iron-enterobactin transporter	2e-05
PRK14273	254	PRK14273, PRK14273, phosphate ABC transporter ATP-	2e-05
COG4604	252	COG4604, CeuD, ABC-type enterochelin transport sys	2e-05
PRK13635	279	PRK13635, cbiO, cobalt transporter ATP-binding sub	2e-05
COG1118	345	COG1118, CysA, ABC-type sulfate/molybdate transpor	2e-05
PRK10584	228	PRK10584, PRK10584, putative ABC transporter ATP-b	2e-05
PRK14236	272	PRK14236, PRK14236, phosphate transporter ATP-bind	2e-05
PRK09452	375	PRK09452, potA, putrescine/spermidine ABC transpor	2e-05
COG4136	213	COG4136, COG4136, ABC-type uncharacterized transpo	3e-05
PRK11248	255	PRK11248, tauB, taurine transporter ATP-binding su	3e-05
cd03236	255	cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin	3e-05
PRK13650	279	PRK13650, cbiO, cobalt transporter ATP-binding sub	3e-05
COG4107	258	COG4107, PhnK, ABC-type phosphonate transport syst	3e-05
PRK10744	260	PRK10744, pstB, phosphate transporter ATP-binding	3e-05
PRK14257	329	PRK14257, PRK14257, phosphate ABC transporter ATP-	3e-05
PRK14261	253	PRK14261, PRK14261, phosphate ABC transporter ATP-	3e-05
PRK14264	305	PRK14264, PRK14264, phosphate ABC transporter ATP-	4e-05
PRK13633	280	PRK13633, PRK13633, cobalt transporter ATP-binding	4e-05
COG4525	259	COG4525, TauB, ABC-type taurine transport system,	4e-05
COG3845	501	COG3845, COG3845, ABC-type uncharacterized transpo	5e-05
PRK10771	232	PRK10771, thiQ, thiamine transporter ATP-binding s	5e-05
COG1245	591	COG1245, COG1245, Predicted ATPase, RNase L inhibi	6e-05
PRK11247	257	PRK11247, ssuB, aliphatic sulfonates transport ATP	6e-05
TIGR00968	237	TIGR00968, 3a0106s01, sulfate ABC transporter, ATP	6e-05
PRK14235	267	PRK14235, PRK14235, phosphate transporter ATP-bind	6e-05
PRK13632	271	PRK13632, cbiO, cobalt transporter ATP-binding sub	6e-05
TIGR00630	925	TIGR00630, uvra, excinuclease ABC, A subunit	6e-05
PRK14265	274	PRK14265, PRK14265, phosphate ABC transporter ATP-	7e-05
PRK11300	255	PRK11300, livG, leucine/isoleucine/valine transpor	7e-05
PRK14266	250	PRK14266, PRK14266, phosphate ABC transporter ATP-	7e-05
PRK14238	271	PRK14238, PRK14238, phosphate transporter ATP-bind	9e-05
TIGR02769	265	TIGR02769, nickel_nikE, nickel import ATP-binding	9e-05
TIGR02770	230	TIGR02770, nickel_nikD, nickel import ATP-binding	9e-05
PRK15079	331	PRK15079, PRK15079, oligopeptide ABC transporter A	9e-05
TIGR03269	520	TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc	1e-04
cd03301	213	cd03301, ABC_MalK_N, The N-terminal ATPase domain	1e-04
PRK10895	241	PRK10895, PRK10895, lipopolysaccharide ABC transpo	1e-04
PRK14249	251	PRK14249, PRK14249, phosphate ABC transporter ATP-	1e-04
cd03217	200	cd03217, ABC_FeS_Assembly, ABC-type transport syst	1e-04
PRK10261	623	PRK10261, PRK10261, glutathione transporter ATP-bi	1e-04
PRK10636	638	PRK10636, PRK10636, putative ABC transporter ATP-b	1e-04
PRK10418	254	PRK10418, nikD, nickel transporter ATP-binding pro	1e-04
pfam13558	79	pfam13558, SbcCD_C, Putative exonuclease SbcCD, C	1e-04
cd03295	242	cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas	2e-04
PRK13648	269	PRK13648, cbiO, cobalt transporter ATP-binding sub	2e-04
cd03250	204	cd03250, ABCC_MRP_domain1, ATP-binding cassette do	2e-04
PRK10419	268	PRK10419, nikE, nickel transporter ATP-binding pro	2e-04
PRK09544	251	PRK09544, znuC, high-affinity zinc transporter ATP	2e-04
PRK14256	252	PRK14256, PRK14256, phosphate ABC transporter ATP-	2e-04
PRK11147	635	PRK11147, PRK11147, ABC transporter ATPase compone	2e-04
PRK13549	506	PRK13549, PRK13549, xylose transporter ATP-binding	2e-04
PRK14251	251	PRK14251, PRK14251, phosphate ABC transporter ATP-	2e-04
COG4138	248	COG4138, BtuD, ABC-type cobalamin transport system	2e-04
PRK10762	501	PRK10762, PRK10762, D-ribose transporter ATP bindi	2e-04
PRK14263	261	PRK14263, PRK14263, phosphate ABC transporter ATP-	2e-04
PRK14242	253	PRK14242, PRK14242, phosphate transporter ATP-bind	3e-04
PRK14241	258	PRK14241, PRK14241, phosphate transporter ATP-bind	3e-04
PRK14259	269	PRK14259, PRK14259, phosphate ABC transporter ATP-	3e-04
PRK11308	327	PRK11308, dppF, dipeptide transporter ATP-binding	3e-04
PRK09473	330	PRK09473, oppD, oligopeptide transporter ATP-bindi	3e-04
TIGR01193	708	TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t	3e-04
cd03241	276	cd03241, ABC_RecN, ATP-binding cassette domain of	3e-04
COG4178	604	COG4178, COG4178, ABC-type uncharacterized transpo	3e-04
PRK10070	400	PRK10070, PRK10070, glycine betaine transporter AT	3e-04
PRK13642	277	PRK13642, cbiO, cobalt transporter ATP-binding sub	3e-04
PRK10851	353	PRK10851, PRK10851, sulfate/thiosulfate transporte	3e-04
COG4148	352	COG4148, ModC, ABC-type molybdate transport system	4e-04
PRK11288	501	PRK11288, araG, L-arabinose transporter ATP-bindin	5e-04
PRK11022	326	PRK11022, dppD, dipeptide transporter ATP-binding	5e-04
PRK13644	274	PRK13644, cbiO, cobalt transporter ATP-binding sub	6e-04
COG1101	263	COG1101, PhnK, ABC-type uncharacterized transport	6e-04
PRK10938	490	PRK10938, PRK10938, putative molybdenum transport	6e-04
PRK11819	556	PRK11819, PRK11819, putative ABC transporter ATP-b	7e-04
PTZ00243	1560	PTZ00243, PTZ00243, ABC transporter; Provisional	7e-04
cd03222	177	cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett	8e-04
COG3845	501	COG3845, COG3845, ABC-type uncharacterized transpo	0.001
PRK11614	237	PRK11614, livF, leucine/isoleucine/valine transpor	0.001
cd03271	261	cd03271, ABC_UvrA_II, ATP-binding cassette domain	0.001
PRK11432	351	PRK11432, fbpC, ferric transporter ATP-binding sub	0.001
PRK11607	377	PRK11607, potG, putrescine transporter ATP-binding	0.001
PRK13409	590	PRK13409, PRK13409, putative ATPase RIL; Provision	0.001
COG0396	251	COG0396, sufC, Cysteine desulfurase activator ATPa	0.001
TIGR03719	552	TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot	0.002
PRK10762	501	PRK10762, PRK10762, D-ribose transporter ATP bindi	0.002
PLN03073	718	PLN03073, PLN03073, ABC transporter F family; Prov	0.002
cd03244	221	cd03244, ABCC_MRP_domain2, ATP-binding cassette do	0.002
PRK13645	289	PRK13645, cbiO, cobalt transporter ATP-binding sub	0.002
PRK11000	369	PRK11000, PRK11000, maltose/maltodextrin transport	0.002
COG4152	300	COG4152, COG4152, ABC-type uncharacterized transpo	0.002
TIGR01978	243	TIGR01978, sufC, FeS assembly ATPase SufC	0.002
PRK13548	258	PRK13548, hmuV, hemin importer ATP-binding subunit	0.003
COG0178	935	COG0178, UvrA, Excinuclease ATPase subunit [DNA re	0.003
PRK11288	501	PRK11288, araG, L-arabinose transporter ATP-bindin	0.004
COG0497	557	COG0497, RecN, ATPase involved in DNA repair [DNA	0.004
TIGR00618	1042	TIGR00618, sbcc, exonuclease SbcC	0.004

>gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein

 Score =  149 bits (377), Expect = 5e-42
 Identities = 61/175 (34%), Positives = 88/175 (50%), Gaps = 48/175 (27%)

Query: 35  VDDILDTIGLVLSKHTLCGR------LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSN 88
           VD++L  +GL    +T  G       LSGG++KRL+ A EL+ +PP++F DEPT+GLDS 
Sbjct: 141 VDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDS- 199

Query: 89  STNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRT 148
                                         F                V +LK LA+ G+T
Sbjct: 200 ------------------------------F-----------MAYSVVQVLKGLAQKGKT 218

Query: 149 IVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTIPYLQTIGLHCPQYHNPAD 203
           I+CTIHQPS+ +FE+ D + ++AEG   Y GS    +P+   +G  CP+ +NPAD
Sbjct: 219 IICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPAD 273

[Transport and binding proteins, Other]. Length = 617

>gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily

 Score =  121 bits (305), Expect = 1e-34
 Identities = 53/99 (53%), Positives = 70/99 (70%), Gaps = 5/99 (5%)

Query: 32  IGLV--DDIL---DTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLD 86
           IG V  DDIL    T+   L        LSGG++KR+SIALEL+ NP ++FLDEPT+GLD
Sbjct: 84  IGYVPQDDILHPTLTVRETLMFAAKLRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLD 143

Query: 87  SNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHL 125
           S+S  Q +++L+ LA  GRTI+C+IHQPS+ IFE+ D L
Sbjct: 144 SSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKL 182

ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194

>gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters

 Score =  108 bits (271), Expect = 1e-29
 Identities = 47/95 (49%), Positives = 58/95 (61%), Gaps = 14/95 (14%)

Query: 55  LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQP 114
           LS  Q+KRL+I +EL   P I+FLDEPT+GLDS +    V  LK LA  G+ I+CTIHQP
Sbjct: 109 LSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQP 168

Query: 115 SATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTI 149
           SA+IFE  D L L              L RGG+T+
Sbjct: 169 SASIFEKFDRLLL--------------LKRGGKTV 189

The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192

>gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily

 Score =  104 bits (262), Expect = 6e-28
 Identities = 32/77 (41%), Positives = 52/77 (67%)

Query: 49  HTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIV 108
             L   +SGG+++R+SIA++L+ +P ++ LDEPT+GLDS +    V+ L  LAR  R ++
Sbjct: 138 GNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVI 197

Query: 109 CTIHQPSATIFEMVDHL 125
            TIHQP + +F + D +
Sbjct: 198 LTIHQPRSDLFRLFDRI 214

The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226

>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein

 Score =  100 bits (251), Expect = 1e-24
 Identities = 54/179 (30%), Positives = 82/179 (45%), Gaps = 51/179 (28%)

Query: 35   VDDILDTIGLVLSKHTLCGR----LSGGQKKRLSIALELIDNPP-IMFLDEPTTGLDSNS 89
            V++++  + +      + G     L+  Q+KRL+I +EL+  P  ++FLDEPT+GLDS +
Sbjct: 878  VEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQT 937

Query: 90   TNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTI 149
                  +++ LA  G+ I+CTIHQPSA +FE  D L L              L +GG+T 
Sbjct: 938  AWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLL--------------LQKGGQT- 982

Query: 150  VCTIHQPSATIFEMVDHLYVIAEGHCVYKG----SSANTIPYLQTIGLH-CPQYHNPAD 203
                                      VY G    +S   I Y +  G   CP+  NPA+
Sbjct: 983  --------------------------VYFGDLGENSHTIINYFEKHGAPKCPEDANPAE 1015

[Transport and binding proteins, Other]. Length = 1394

>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]

 Score = 93.9 bits (234), Expect = 2e-23
 Identities = 31/93 (33%), Positives = 51/93 (54%)

Query: 35  VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
           ++++L+  GL    +     LSGG K+RLSIAL L+ +P ++ LDEPT+GLD  S  +  
Sbjct: 117 IEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIW 176

Query: 95  AMLKALARGGRTIVCTIHQPSATIFEMVDHLGL 127
            +L+ LA+ G   +           E+ D + +
Sbjct: 177 ELLRELAKEGGVTILLSTHILEEAEELCDRVII 209

Length = 293

>gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional

 Score = 92.6 bits (230), Expect = 5e-22
 Identities = 50/179 (27%), Positives = 92/179 (51%), Gaps = 47/179 (26%)

Query: 30  DTIGLVDDILDTIGLVLSKHTLCGR-----LSGGQKKRLSIALELIDNPPIMFLDEPTTG 84
           + I + + ++  +GL   ++T+ G      +SGG++KR+SIA E++ NP ++ LDEPT+G
Sbjct: 177 EKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSG 236

Query: 85  LDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALAR 144
           LD+ +                             + +V  LG              +LA+
Sbjct: 237 LDATAA----------------------------YRLVLTLG--------------SLAQ 254

Query: 145 GGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTIPYLQTIGLHCPQYHNPAD 203
            G+TIV ++HQPS+ +++M D + V++EG C++ G  ++ + Y +++G       NPAD
Sbjct: 255 KGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPAD 313

Length = 659

>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional

 Score = 91.4 bits (227), Expect = 1e-21
 Identities = 47/120 (39%), Positives = 68/120 (56%), Gaps = 19/120 (15%)

Query: 35   VDDILDTIGLVLSKHTLCGR-----LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNS 89
            VD++++ + L   K  + G      LS  Q+KRL+IA+EL+ NP I+F+DEPT+GLD+ +
Sbjct: 995  VDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1054

Query: 90   TNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTI 149
                +  ++     GRT+VCTIHQPS  IFE  D L L              + RGG+ I
Sbjct: 1055 AAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLL--------------MKRGGQVI 1100

Length = 1470

>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain

 Score = 79.6 bits (197), Expect = 5e-19
 Identities = 32/94 (34%), Positives = 52/94 (55%), Gaps = 7/94 (7%)

Query: 22  RISVDDILDTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEP 81
            I +D        ++++   IG V         LSGGQ++R+++A  L+ NP ++ LDEP
Sbjct: 55  EILIDGKDIAKLPLEELRRRIGYVPQ-------LSGGQRQRVALARALLLNPDLLLLDEP 107

Query: 82  TTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPS 115
           T+GLD  S  + + +L+ LA  GRT++   H P 
Sbjct: 108 TSGLDPASRERLLELLRELAEEGRTVIIVTHDPE 141

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157

>gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system

 Score = 79.8 bits (198), Expect = 1e-18
 Identities = 31/79 (39%), Positives = 46/79 (58%)

Query: 35  VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
           V++ L+ +GL   +      LSGGQK+R++IA  L  +P I+ LDEPT GLD     + +
Sbjct: 115 VEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELL 174

Query: 95  AMLKALARGGRTIVCTIHQ 113
            +LK L   G+TI+   H 
Sbjct: 175 ELLKKLKAEGKTIIIVTHD 193

Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211

>gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A

 Score = 77.5 bits (192), Expect = 8e-18
 Identities = 30/78 (38%), Positives = 46/78 (58%), Gaps = 1/78 (1%)

Query: 35  VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
           V+ +L  +GL    +     LSGG K++LS+A+ LI  P ++ LDEPT+GLD  S     
Sbjct: 114 VELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIW 173

Query: 95  AMLKALARGGRTIVCTIH 112
            ++  + R GR+I+ T H
Sbjct: 174 DLILEV-RKGRSIILTTH 190

The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220

>gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

 Score = 74.2 bits (183), Expect = 3e-16
 Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 1/90 (1%)

Query: 35  VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
           VD+ L+ +G+   +    G LSGGQK+R+ +A  L  NP ++ LDEP TG+D     +  
Sbjct: 120 VDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIY 179

Query: 95  AMLKALARGGRTIVCTIHQPSATIFEMVDH 124
            +LK L + G+T++   H     +    D 
Sbjct: 180 DLLKELRQEGKTVLMVTHDLG-LVMAYFDR 208

Length = 254

>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A

 Score = 72.4 bits (179), Expect = 3e-16
 Identities = 25/59 (42%), Positives = 41/59 (69%)

Query: 54  RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112
           +LSGG K+RL++A  L+ +P ++ LDEPT+GLD  S  +   +L+ L + G+TI+ + H
Sbjct: 95  KLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSH 153

This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173

>gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters

 Score = 71.5 bits (176), Expect = 1e-15
 Identities = 27/125 (21%), Positives = 51/125 (40%), Gaps = 41/125 (32%)

Query: 55  LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQP 114
           +SGG++KR+SIA  L+    ++  D  T GLDS++  + +  ++ +A   +T        
Sbjct: 119 ISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKT-------- 170

Query: 115 SATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGH 174
                                            T   +++Q S  I+++ D + V+ EG 
Sbjct: 171 ---------------------------------TTFVSLYQASDEIYDLFDKVLVLYEGR 197

Query: 175 CVYKG 179
            +Y G
Sbjct: 198 QIYYG 202

The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202

>gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters

 Score = 71.8 bits (177), Expect = 1e-15
 Identities = 33/118 (27%), Positives = 57/118 (48%), Gaps = 13/118 (11%)

Query: 7   GTIWCWQIISAQYSHRISVDDILDTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIA 66
           G    ++ +S     +  VD+ L+ +GL +         L+   + G LSGGQ++R+ +A
Sbjct: 97  GHKGLFRRLSKADKAK--VDEALERVGLSE---------LADRQI-GELSGGQQQRVLLA 144

Query: 67  LELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDH 124
             L+ +P ++ LDEP  G+D  +      +L+ L R G TI+   H     + E  D 
Sbjct: 145 RALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLG-LVLEYFDR 201

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213

>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein

 Score = 73.6 bits (181), Expect = 2e-15
 Identities = 42/175 (24%), Positives = 67/175 (38%), Gaps = 46/175 (26%)

Query: 34  LVDDILDTIGLVLSKHTLCGR-----LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSN 88
           + D  + T GL  +++T  G      +SGG++KR+SIA   +    I   D  T GLDS 
Sbjct: 184 IADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSA 243

Query: 89  STNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRT 148
           +  + +  LK  A                                    +L        T
Sbjct: 244 TALEFIRALKTSAN-----------------------------------ILDT------T 262

Query: 149 IVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTIPYLQTIGLHCPQYHNPAD 203
            +  I+Q S   +E+ D + V+ EG+ +Y G +     Y + +G  CP     AD
Sbjct: 263 PLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPDRQTTAD 317

[Transport and binding proteins, Other]. Length = 1394

>gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system

 Score = 69.5 bits (171), Expect = 1e-14
 Identities = 27/79 (34%), Positives = 47/79 (59%), Gaps = 1/79 (1%)

Query: 38  ILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAML 97
            L+ +GL+   +    +LSGGQ++R++IA  L+  P ++  DEP   LD  S+ Q + +L
Sbjct: 128 ALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLL 187

Query: 98  KALARG-GRTIVCTIHQPS 115
           K + R  G T++ ++HQ  
Sbjct: 188 KRINREEGITVIVSLHQVD 206

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241

>gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family

 Score = 69.9 bits (172), Expect = 3e-14
 Identities = 26/71 (36%), Positives = 45/71 (63%), Gaps = 3/71 (4%)

Query: 55  LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQP 114
           LSGGQ++ +++A  L+ +PPI+ LDEPT+ +D+ S  +    LK     G+T+V   H+ 
Sbjct: 602 LSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWL-AGKTLVLVTHRT 660

Query: 115 SATIFEMVDHL 125
           S  + ++VD +
Sbjct: 661 S--LLDLVDRI 669

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694

>gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system

 Score = 67.8 bits (167), Expect = 4e-14
 Identities = 24/74 (32%), Positives = 41/74 (55%)

Query: 35  VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
            +++L+ +GL        G LS GQ++RL IA  L  +P ++ LDEP  GL+   T +  
Sbjct: 124 AEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELA 183

Query: 95  AMLKALARGGRTIV 108
            +++ L   G T++
Sbjct: 184 ELIRELRERGITVL 197

The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236

>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional

 Score = 69.9 bits (171), Expect = 5e-14
 Identities = 47/176 (26%), Positives = 81/176 (46%), Gaps = 48/176 (27%)

Query: 34  LVDDILDTIGLVLSKHTLCGR-----LSGGQKKRLSIALELIDNP-PIMFLDEPTTGLDS 87
           + D  L  +GL + K T+ G      +SGGQKKR++   E+I  P   +F+DE +TGLDS
Sbjct: 311 ITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTG-EMIVGPTKTLFMDEISTGLDS 369

Query: 88  NSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGR 147
           ++T Q V  L+ +          +H   AT+                 +++L        
Sbjct: 370 STTYQIVKCLQQI----------VHLTEATVL----------------MSLL-------- 395

Query: 148 TIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTIPYLQTIGLHCPQYHNPAD 203
                  QP+   F++ D + +++EG  VY+G   + + + ++ G  CP+    AD
Sbjct: 396 -------QPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESCGFKCPERKGTAD 444

Length = 1470

>gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein

 Score = 67.1 bits (164), Expect = 5e-14
 Identities = 25/80 (31%), Positives = 40/80 (50%)

Query: 35  VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
           V++ L  +GL   +     +LS GQ++R+++A  L+   P+  LDEPTT LD     +  
Sbjct: 106 VEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFA 165

Query: 95  AMLKALARGGRTIVCTIHQP 114
             +      G  +V T HQ 
Sbjct: 166 EAMAGHCARGGMVVLTTHQD 185

CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201

>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit

 Score = 66.7 bits (163), Expect = 6e-14
 Identities = 29/78 (37%), Positives = 43/78 (55%)

Query: 35  VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
           V + L  +G    +      LSGG+KKR++IA  +   P ++ LDEPT GLD     Q +
Sbjct: 108 VREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQML 167

Query: 95  AMLKALARGGRTIVCTIH 112
           A+L+ L   G T+V + H
Sbjct: 168 AILRRLRAEGMTVVISTH 185

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190

>gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein

 Score = 67.4 bits (165), Expect = 7e-14
 Identities = 30/79 (37%), Positives = 45/79 (56%), Gaps = 1/79 (1%)

Query: 35  VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
           +D++LD +GL+ +   L    SGG ++RL IA  L+  P ++FLDEPT GLD  +     
Sbjct: 112 IDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVW 171

Query: 95  AMLKAL-ARGGRTIVCTIH 112
             ++ L    G TI+ T H
Sbjct: 172 EYIEKLKEEFGMTILLTTH 190

DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220

>gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein

 Score = 66.7 bits (164), Expect = 8e-14
 Identities = 32/92 (34%), Positives = 50/92 (54%), Gaps = 6/92 (6%)

Query: 38  ILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAML 97
           +L+ +GL    +     LSGGQ++R++IA  L ++P I+  DEPT  LDS +  + + +L
Sbjct: 124 LLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELL 183

Query: 98  KALARG-GRTIVCTIHQPSA-----TIFEMVD 123
           + L +  G TIV   H P        I E+ D
Sbjct: 184 RELNKEAGTTIVVVTHDPELAEYADRIIELRD 215

This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218

>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family

 Score = 66.9 bits (164), Expect = 1e-13
 Identities = 32/97 (32%), Positives = 49/97 (50%), Gaps = 3/97 (3%)

Query: 30  DTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNS 89
           +       +L+ +GL          LSGGQK+R++IA  L+  P ++  DEPT  LDS S
Sbjct: 117 EARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKS 176

Query: 90  TNQCVAMLKALAR-GGRTIVCTIHQPSATIFEMVDHL 125
               V +++ LAR  G TI+   H     I ++ D +
Sbjct: 177 GRDVVELMQKLAREQGCTILIVTHDNR--ILDVADRI 211

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220

>gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents

 Score = 66.8 bits (164), Expect = 1e-13
 Identities = 29/96 (30%), Positives = 53/96 (55%), Gaps = 4/96 (4%)

Query: 34  LVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQC 93
           +V + L+ +GL  ++      LSGG KKR+++A  L  +P ++  DEPT GLD  ++   
Sbjct: 116 IVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVI 175

Query: 94  VAMLKALAR--GGRTIVCTIHQPSATIFEMVDHLGL 127
             ++++L +  G  +I+ T H    T F + D + +
Sbjct: 176 DDLIRSLKKELGLTSIMVT-HDLD-TAFAIADRIAV 209

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235

>gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA

 Score = 66.2 bits (162), Expect = 1e-13
 Identities = 30/81 (37%), Positives = 45/81 (55%), Gaps = 2/81 (2%)

Query: 35  VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
           ++D L  +GL   +     +LS GQ++RL++A   +   P+  LDEPTT LD        
Sbjct: 108 IEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLA 167

Query: 95  AMLKA-LARGGRTIVCTIHQP 114
            +L+A LARGG  ++ T HQ 
Sbjct: 168 GLLRAHLARGGIVLLTT-HQD 187

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198

>gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins

 Score = 65.5 bits (161), Expect = 2e-13
 Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 1/84 (1%)

Query: 32  IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTN 91
           I  V   L+ +GL          LSGG+++R+ +A  L   PPI+ LDEPT+ LD     
Sbjct: 75  IAYVPQALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQI 134

Query: 92  QCVAMLKALAR-GGRTIVCTIHQP 114
           + + +L+ LAR  G+T+V  +H  
Sbjct: 135 ELLELLRRLARERGKTVVMVLHDL 158

ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180

>gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters

 Score = 66.0 bits (162), Expect = 2e-13
 Identities = 28/77 (36%), Positives = 45/77 (58%)

Query: 37  DILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAM 96
           ++L+ +GL         +LSGGQ++R++IA  L  NP +M  DEPT+ LD     + + +
Sbjct: 118 ELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDV 177

Query: 97  LKALARGGRTIVCTIHQ 113
           +K LA  G T+V   H+
Sbjct: 178 MKDLAEEGMTMVVVTHE 194

HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213

>gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 66.1 bits (162), Expect = 2e-13
 Identities = 32/79 (40%), Positives = 44/79 (55%), Gaps = 1/79 (1%)

Query: 35  VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
           V + L+ +GL          LSGGQK+R++IA  L   P I+ LDEPT GLD     + +
Sbjct: 119 VAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELL 178

Query: 95  AMLKALAR-GGRTIVCTIH 112
            +LK L   GG+TI+   H
Sbjct: 179 ELLKKLKEEGGKTIIIVTH 197

Length = 235

>gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group

 Score = 65.3 bits (160), Expect = 3e-13
 Identities = 26/86 (30%), Positives = 47/86 (54%), Gaps = 2/86 (2%)

Query: 38  ILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAML 97
            L+ +GL L        LSGG+++R+++A  ++  PP++  DEPT  LD  + ++ + +L
Sbjct: 118 ALEKVGLNLKLKQKIYELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLL 177

Query: 98  KALARGGRTIVCTIHQPSATIFEMVD 123
             L   G+TI+   H P   + +  D
Sbjct: 178 LELNDEGKTIIIVTHDPE--VAKQAD 201

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206

>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit

 Score = 66.3 bits (162), Expect = 3e-13
 Identities = 30/77 (38%), Positives = 43/77 (55%)

Query: 36  DDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVA 95
           +++L+   L  +     G  SGG ++RL IA  LI  P ++FLDEPTTGLD  +      
Sbjct: 106 EELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWD 165

Query: 96  MLKALARGGRTIVCTIH 112
            ++AL   G TI+ T H
Sbjct: 166 YIRALKEEGVTILLTTH 182

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302

>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE

 Score = 65.3 bits (160), Expect = 3e-13
 Identities = 26/81 (32%), Positives = 47/81 (58%)

Query: 35  VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
           V   L  +GL         +LSGG+++R++IA  ++++PP++  DEPT  LD + + + +
Sbjct: 118 VGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERIL 177

Query: 95  AMLKALARGGRTIVCTIHQPS 115
            +LK L + G T++   H  S
Sbjct: 178 DLLKRLNKRGTTVIVATHDLS 198

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214

>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 65.9 bits (161), Expect = 3e-13
 Identities = 28/58 (48%), Positives = 38/58 (65%)

Query: 55  LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112
           LSGGQKKR++IA  L   P I+ LDEPT+GLD    +Q + +L  L + G TI+ + H
Sbjct: 138 LSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTH 195

Length = 275

>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

 Score = 65.7 bits (161), Expect = 4e-13
 Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 1/81 (1%)

Query: 35  VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
           V++ L+ +GL          LSGG+++R+ IA  L    PI+ LDEPT+ LD     + +
Sbjct: 119 VEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVL 178

Query: 95  AMLKALAR-GGRTIVCTIHQP 114
            +L+ L R  G T+V  +H  
Sbjct: 179 ELLRDLNREKGLTVVMVLHDL 199

Length = 258

>gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system

 Score = 64.2 bits (157), Expect = 6e-13
 Identities = 26/93 (27%), Positives = 49/93 (52%), Gaps = 4/93 (4%)

Query: 22  RISVDDILDTIGLVDDILDTIGL--VLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLD 79
            + + ++       + +L  + L  +  +H L   LSGGQK+RL+IA  L+    ++  D
Sbjct: 94  LLGLKELDAGNEQAETVLKDLDLYALKERHPL--SLSGGQKQRLAIAAALLSGKDLLIFD 151

Query: 80  EPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112
           EPT+GLD  +  +   +++ LA  G+ ++   H
Sbjct: 152 EPTSGLDYKNMERVGELIRELAAQGKAVIVITH 184

Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205

>gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter

 Score = 64.0 bits (156), Expect = 9e-13
 Identities = 27/78 (34%), Positives = 47/78 (60%)

Query: 35  VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
           V   L+ +GL      L   LSGG+++R++IA  ++++P I+  DEPT  LD ++T + +
Sbjct: 117 VPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIM 176

Query: 95  AMLKALARGGRTIVCTIH 112
            +LK + + G T+V   H
Sbjct: 177 NLLKKINKAGTTVVVATH 194

FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214

>gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems

 Score = 63.4 bits (155), Expect = 1e-12
 Identities = 25/60 (41%), Positives = 40/60 (66%), Gaps = 1/60 (1%)

Query: 55  LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKAL-ARGGRTIVCTIHQ 113
           LSGGQ++R+++A  L  +P ++ LDEPT+ LD  +  +  A+LK+L A+ G T+V   H 
Sbjct: 101 LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHD 160

This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178

>gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

 Score = 63.8 bits (156), Expect = 1e-12
 Identities = 26/80 (32%), Positives = 42/80 (52%)

Query: 35  VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
           + + L  +GL   +    G+LS GQ++R+++A   +   P+  LDEP T LD        
Sbjct: 111 IWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLT 170

Query: 95  AMLKALARGGRTIVCTIHQP 114
           A++ A A  G  ++ T HQP
Sbjct: 171 ALMAAHAAQGGIVLLTTHQP 190

Length = 209

>gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C

 Score = 63.8 bits (156), Expect = 1e-12
 Identities = 27/71 (38%), Positives = 48/71 (67%), Gaps = 3/71 (4%)

Query: 55  LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQP 114
           LSGGQ++ +++A  L+++PPI+ LDEPT+ +D NS  +    L+ L  G +T++   H+P
Sbjct: 141 LSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLL-GDKTLIIITHRP 199

Query: 115 SATIFEMVDHL 125
           S  + ++VD +
Sbjct: 200 S--LLDLVDRI 208

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220

>gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter

 Score = 63.4 bits (155), Expect = 1e-12
 Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 1/93 (1%)

Query: 35  VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
           +D++LD +GL  S        S G K+RL IAL L+ NP ++ LDEPT GLD +   +  
Sbjct: 107 IDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELR 166

Query: 95  AMLKALARGGRTIVCTIHQPSATIFEMVDHLGL 127
            ++ +L   G T++ + H  S  I ++ D +G+
Sbjct: 167 ELILSLRDQGITVLISSHLLS-EIQKVADRIGI 198

The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208

>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit

 Score = 63.7 bits (155), Expect = 1e-12
 Identities = 29/78 (37%), Positives = 39/78 (50%)

Query: 35  VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
           V D L  +GL        G LSGGQ++R+ +A  L   P ++ LDEP TGLD  +     
Sbjct: 94  VRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLT 153

Query: 95  AMLKALARGGRTIVCTIH 112
            +   LA  G  I+ T H
Sbjct: 154 ELFIELAGAGTAILMTTH 171

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223

>gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

 Score = 63.3 bits (155), Expect = 2e-12
 Identities = 30/82 (36%), Positives = 49/82 (59%), Gaps = 2/82 (2%)

Query: 35  VDDILDTIGLV-LSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQC 93
            +++L+ +GL           LSGGQ++R++IA  LI+NP I+  DEPT  LDS +  + 
Sbjct: 122 AEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEV 181

Query: 94  VAMLKALAR-GGRTIVCTIHQP 114
           + +L+ L +  G+TI+   H P
Sbjct: 182 LELLRELNKERGKTIIMVTHDP 203

Length = 226

>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein

 Score = 63.5 bits (155), Expect = 2e-12
 Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 1/78 (1%)

Query: 37  DILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAM 96
             L+ +GL    +    +LSGGQ++R++IA  L   P ++  DEP   LD  ++ Q +  
Sbjct: 128 SALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDY 187

Query: 97  LKALARG-GRTIVCTIHQ 113
           LK + +  G T++  +HQ
Sbjct: 188 LKRINKEDGITVIINLHQ 205

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243

>gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

 Score = 62.9 bits (154), Expect = 3e-12
 Identities = 23/61 (37%), Positives = 38/61 (62%)

Query: 53  GRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112
            +LSGGQ++R++IA  L  +P +M  DEPT+ LD     + + ++K LA  G T++   H
Sbjct: 135 AQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTH 194

Query: 113 Q 113
           +
Sbjct: 195 E 195

Length = 240

>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters

 Score = 61.2 bits (150), Expect = 5e-12
 Identities = 28/70 (40%), Positives = 43/70 (61%), Gaps = 3/70 (4%)

Query: 55  LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQP 114
           LSGGQ++R++IA  L+ +PPI+ LDE T+ LD  +    +  L+AL   G+T++   H+ 
Sbjct: 97  LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRAL-AKGKTVIVIAHRL 155

Query: 115 SATIFEMVDH 124
           S TI    D 
Sbjct: 156 S-TI-RDADR 163

The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171

>gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component

 Score = 61.8 bits (151), Expect = 5e-12
 Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 12/80 (15%)

Query: 19  YSHRISVDDILDTIGL------------VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIA 66
                +V + LD I              VD++L+ + L        G LSGG ++R+ IA
Sbjct: 83  VYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIA 142

Query: 67  LELIDNPPIMFLDEPTTGLD 86
             L+ +P I+ +DEPT GLD
Sbjct: 143 QALVGDPSILIVDEPTAGLD 162

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211

>gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional

 Score = 61.4 bits (150), Expect = 7e-12
 Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 2/81 (2%)

Query: 35  VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
           +   L+ +GL    H   G LS GQK+R+++A  L+ N PI  LDEPT  LD+ +     
Sbjct: 108 IAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFA 167

Query: 95  AMLKA-LARGGRTIVCTIHQP 114
            +++A LA+GG  ++   H P
Sbjct: 168 ELIRAHLAQGG-IVIAATHIP 187

Length = 207

>gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

 Score = 62.1 bits (151), Expect = 7e-12
 Identities = 26/77 (33%), Positives = 41/77 (53%)

Query: 37  DILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAM 96
             L  +G+          LSGGQ++R++IA  L   P +M  DEPT+ LD     + + +
Sbjct: 135 KYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKV 194

Query: 97  LKALARGGRTIVCTIHQ 113
           ++ LA  GRT+V   H+
Sbjct: 195 MQDLAEEGRTMVVVTHE 211

Length = 256

>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter

 Score = 63.5 bits (154), Expect = 7e-12
 Identities = 30/74 (40%), Positives = 44/74 (59%)

Query: 39   LDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLK 98
            + ++GL L    L G  SGG K++LS A+ LI  PP++ LDEPTTG+D  +       + 
Sbjct: 2055 IQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIV 2114

Query: 99   ALARGGRTIVCTIH 112
            ++ R GR +V T H
Sbjct: 2115 SIIREGRAVVLTSH 2128

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272

>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

 Score = 62.6 bits (153), Expect = 1e-11
 Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 1/61 (1%)

Query: 55  LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQP 114
           LSGGQ++RL++A  L+  P I+ LDE T+ LD  +    +  L  +   GRT++   H+ 
Sbjct: 610 LSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQI-LQGRTVIIIAHRL 668

Query: 115 S 115
           S
Sbjct: 669 S 669

Length = 709

>gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins

 Score = 61.4 bits (150), Expect = 1e-11
 Identities = 34/76 (44%), Positives = 45/76 (59%), Gaps = 10/76 (13%)

Query: 49  HTLCG----RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKAL--AR 102
            TL G    +LSGGQK+R++IA  L+ NP I+ LDE T+ LD+ S    V   +AL  A 
Sbjct: 130 DTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKL-VQ--EALDRAM 186

Query: 103 GGRTIVCTIHQPSATI 118
            GRT +   H+ S TI
Sbjct: 187 KGRTTIVIAHRLS-TI 201

MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238

>gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional

 Score = 61.7 bits (150), Expect = 2e-11
 Identities = 27/60 (45%), Positives = 41/60 (68%)

Query: 53  GRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112
           G LSGG K+RL++A  L+++P ++ LDEPTTGLD  + +     L++L   G+TI+ T H
Sbjct: 137 GELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTH 196

Length = 306

>gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional

 Score = 61.4 bits (149), Expect = 2e-11
 Identities = 27/58 (46%), Positives = 41/58 (70%)

Query: 55  LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112
           LSGG K+RL++A  LI++P ++ LDEPTTGLD ++ +     L++L   G+TI+ T H
Sbjct: 173 LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTH 230

Length = 340

>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C

 Score = 60.3 bits (147), Expect = 3e-11
 Identities = 24/55 (43%), Positives = 41/55 (74%)

Query: 54  RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIV 108
           +LSGG+K+R++IA  ++ NPPI+ LDE T+ LD+++  +  A L+ +++G  TIV
Sbjct: 137 KLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIV 191

ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236

>gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

 Score = 60.0 bits (146), Expect = 4e-11
 Identities = 27/74 (36%), Positives = 41/74 (55%)

Query: 35  VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
           +D++L TIGL   +  L   LS GQK+ L I + L  +P ++ LDEP  G+    T +  
Sbjct: 128 IDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTA 187

Query: 95  AMLKALARGGRTIV 108
            +LK+LA     +V
Sbjct: 188 ELLKSLAGKHSILV 201

Length = 249

>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

 Score = 59.3 bits (144), Expect = 5e-11
 Identities = 28/96 (29%), Positives = 55/96 (57%), Gaps = 1/96 (1%)

Query: 35  VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
           +D++L+ + L  +      + S G K+RL IA+ L+++P ++ LDEPT GLD     +  
Sbjct: 105 IDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELR 164

Query: 95  AMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSN 130
            ++++    G T++ + H  S  + ++ DH+G+ S 
Sbjct: 165 ELIRSFPEQGITVILSSHILS-EVQQLADHIGIISE 199

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223

>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

 Score = 60.4 bits (147), Expect = 5e-11
 Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 1/97 (1%)

Query: 27  DILDTIGLVDDILDTIGLVLSKHTLCGR-LSGGQKKRLSIALELIDNPPIMFLDEPTTGL 85
             L  +GL   +      + +     GR LSGG+++RL++A  L+ + P+  LDEPT GL
Sbjct: 446 AALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGL 505

Query: 86  DSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMV 122
           D  +  Q +A+L   A G   ++ T         + +
Sbjct: 506 DPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRI 542

Length = 573

>gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter

 Score = 59.5 bits (145), Expect = 5e-11
 Identities = 29/80 (36%), Positives = 46/80 (57%), Gaps = 1/80 (1%)

Query: 35  VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
           V ++L+ +GL         +LSGGQK+R+ IA  L +NP ++  DE T+ LD  +T   +
Sbjct: 121 VLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSIL 180

Query: 95  AMLKAL-ARGGRTIVCTIHQ 113
           A+L+ +    G TIV   H+
Sbjct: 181 ALLRDINRELGLTIVLITHE 200

MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233

>gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD

 Score = 59.5 bits (145), Expect = 6e-11
 Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 1/74 (1%)

Query: 35  VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
           ++++L+TIGL      L G LS GQK+ L I + L+ +P ++ LDEP  G+    T +  
Sbjct: 124 IEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTA 183

Query: 95  AMLKALARGGRTIV 108
            +LK+LA G  ++V
Sbjct: 184 ELLKSLA-GKHSVV 196

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242

>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA

 Score = 60.1 bits (146), Expect = 7e-11
 Identities = 25/56 (44%), Positives = 36/56 (64%)

Query: 53  GRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIV 108
             LSGGQ++RL+IA  L+ + PI+ LDE T+ LD+ S     A L+ L +G  T+V
Sbjct: 468 VLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLV 523

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571

>gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 59.2 bits (144), Expect = 7e-11
 Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 1/78 (1%)

Query: 37  DILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAM 96
           D L+ +G++   +     LSGGQ++R++IA  L+  P I+  DEP   LD  S  + + +
Sbjct: 130 DALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDI 189

Query: 97  LKALARG-GRTIVCTIHQ 113
           LK + +  G T++  +HQ
Sbjct: 190 LKDINQEDGITVIVNLHQ 207

Length = 258

>gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

 Score = 59.1 bits (144), Expect = 8e-11
 Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 1/73 (1%)

Query: 37  DILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAM 96
           ++L+ +GL        G LS GQ++RL IA  L   P ++ LDEP  GL+   T +   +
Sbjct: 132 ELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAEL 191

Query: 97  LKAL-ARGGRTIV 108
           ++ L  RGG TI+
Sbjct: 192 IRELRDRGGVTIL 204

Length = 250

>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI

 Score = 59.6 bits (144), Expect = 8e-11
 Identities = 27/58 (46%), Positives = 41/58 (70%)

Query: 55  LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112
           LSGG K+RL++A  LI++P ++ LDEPTTGLD ++ +     L++L   G+TI+ T H
Sbjct: 136 LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTH 193

This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303

>gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit

 Score = 59.6 bits (145), Expect = 1e-10
 Identities = 31/95 (32%), Positives = 54/95 (56%), Gaps = 8/95 (8%)

Query: 25  VDDILDTIGLVDDILDTIGLVLSKHTLCG----RLSGGQKKRLSIALELIDNPPIMFLDE 80
           + + L+  GL D+ +  +   L   T  G     LSGGQ +RL++A   + + P++ LDE
Sbjct: 428 IREALERAGL-DEFVAALPQGL--DTPIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDE 484

Query: 81  PTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPS 115
           PT  LD+ +  + +  L+ALA+ GRT++   H+ +
Sbjct: 485 PTAHLDAETEAEVLEALRALAQ-GRTVLLVTHRLA 518

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529

>gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional

 Score = 57.5 bits (140), Expect = 2e-10
 Identities = 26/92 (28%), Positives = 43/92 (46%)

Query: 37  DILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAM 96
           + L  +GL   +     +LS GQ++R+++A   +   P+  LDEP T +D     +  A+
Sbjct: 112 EALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEAL 171

Query: 97  LKALARGGRTIVCTIHQPSATIFEMVDHLGLD 128
           L   A  G  ++ T HQ      + V  L L 
Sbjct: 172 LAQHAEQGGMVILTTHQDLPVASDKVRKLRLG 203

Length = 204

>gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional

 Score = 58.4 bits (141), Expect = 2e-10
 Identities = 26/79 (32%), Positives = 46/79 (58%)

Query: 34  LVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQC 93
           +V   L  + +V  +H   G LSGGQKKR+ +A  +     ++ LDEP TG+D  +  + 
Sbjct: 122 IVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARI 181

Query: 94  VAMLKALARGGRTIVCTIH 112
           +++L+ L   G+T++ + H
Sbjct: 182 ISLLRELRDEGKTMLVSTH 200

Length = 272

>gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter

 Score = 57.8 bits (140), Expect = 2e-10
 Identities = 25/81 (30%), Positives = 47/81 (58%), Gaps = 6/81 (7%)

Query: 35  VDDILDTIGLVLSKHTL---CGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTN 91
           ++++ D +G+   +  L    G  S G +++++IA  L+ +PP++ LDEPTTGLD  +T 
Sbjct: 117 LEELADRLGM---EELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATR 173

Query: 92  QCVAMLKALARGGRTIVCTIH 112
                ++ L   G+ I+ + H
Sbjct: 174 ALREFIRQLRALGKCILFSTH 194

NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218

>gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter

 Score = 55.4 bits (134), Expect = 2e-10
 Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 9/59 (15%)

Query: 25  VDDILDTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTT 83
            ++ L+ +GL D +              G LSGGQK+R++IA  L+  P ++ LDEPT 
Sbjct: 70  AEEALERVGLPDFL---------DREPVGTLSGGQKQRVAIARALLKKPKLLLLDEPTA 119

ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119

>gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

 Score = 57.4 bits (139), Expect = 3e-10
 Identities = 23/78 (29%), Positives = 42/78 (53%)

Query: 35  VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
           + ++   + L+       G  S G K++++IA  L+ +P I+ LDEPT+GLD  +  +  
Sbjct: 114 IAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFH 173

Query: 95  AMLKALARGGRTIVCTIH 112
             +K L   GR ++ + H
Sbjct: 174 DFIKQLKNEGRAVIFSSH 191

Length = 245

>gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family

 Score = 58.2 bits (141), Expect = 4e-10
 Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 1/64 (1%)

Query: 53  GRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112
             LSGGQ++R++IA  L+ NP I+  DE T+ LD  S    +  ++ + R GRT++   H
Sbjct: 592 ANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICR-GRTVIIIAH 650

Query: 113 QPSA 116
           + S 
Sbjct: 651 RLST 654

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694

>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 57.6 bits (139), Expect = 4e-10
 Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 1/79 (1%)

Query: 35  VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
           VD+ L   G+   K      LS GQKKR++IA  L+  P ++ LDEPT GLD    ++ +
Sbjct: 122 VDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIM 181

Query: 95  AMLKALARG-GRTIVCTIH 112
            +L  + +  G TI+   H
Sbjct: 182 KLLVEMQKELGLTIIIATH 200

Length = 283

>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

 Score = 57.7 bits (140), Expect = 5e-10
 Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 9/96 (9%)

Query: 24  SVDDILDTIGLVDDILDTIGLVLSKHTLCG----RLSGGQKKRLSIALELIDNPPIMFLD 79
            +   LD  GL++ +    GL     T+ G     LSGGQ +RL++A  L+    ++ LD
Sbjct: 426 EIIAALDQAGLLEFVPKPDGL----DTVIGEGGAGLSGGQAQRLALARALLSPASLLLLD 481

Query: 80  EPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPS 115
           EPT  LD+ +    +  L+ LA+    +V T H+  
Sbjct: 482 EPTAHLDAETEQIILQALQELAKQKTVLVIT-HRLE 516

Length = 559

>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional

 Score = 57.8 bits (140), Expect = 5e-10
 Identities = 25/62 (40%), Positives = 39/62 (62%)

Query: 53  GRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112
            +LSGGQ++R+SIA  L++   ++  DEPT  LDS+S  + +A+L  L   G T++   H
Sbjct: 143 SQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTH 202

Query: 113 QP 114
            P
Sbjct: 203 DP 204

Length = 648

>gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C

 Score = 56.9 bits (138), Expect = 5e-10
 Identities = 24/55 (43%), Positives = 36/55 (65%)

Query: 54  RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIV 108
           +LSGGQ++R++IA  L+ +PPI+ LDE T+ LD+ S     A L+ L +   T V
Sbjct: 138 KLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMKNRTTFV 192

MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234

>gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 57.3 bits (139), Expect = 5e-10
 Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 1/81 (1%)

Query: 35  VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
           V ++L+ +GL         +LSGGQK+R++IA  L +NP I+  DE T+ LD  +T   +
Sbjct: 122 VAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSIL 181

Query: 95  AMLKAL-ARGGRTIVCTIHQP 114
            +LK +    G TIV   H+ 
Sbjct: 182 ELLKDINRELGLTIVLITHEM 202

Length = 339

>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed

 Score = 56.3 bits (136), Expect = 8e-10
 Identities = 27/77 (35%), Positives = 44/77 (57%)

Query: 37  DILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAM 96
           ++L  +GL    H     LSGGQ++R++IA  L   P +M  DEPT+ LD    ++ + +
Sbjct: 119 ELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKV 178

Query: 97  LKALARGGRTIVCTIHQ 113
           ++ LA  G T+V   H+
Sbjct: 179 MQDLAEEGMTMVIVTHE 195

Length = 240

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 57.1 bits (138), Expect = 8e-10
 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 8/64 (12%)

Query: 53  GRLSGGQKKRLSIALEL------IDNPPI--MFLDEPTTGLDSNSTNQCVAMLKALARGG 104
             LSGG++   S+AL L           +  +FLDEP   LD     +   +L+ L   G
Sbjct: 814 KTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDG 873

Query: 105 RTIV 108
           R I+
Sbjct: 874 RQII 877

Length = 908

>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional

 Score = 56.6 bits (137), Expect = 8e-10
 Identities = 22/58 (37%), Positives = 33/58 (56%)

Query: 55  LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112
           LSGGQK+R+++A  L   P  +  DEPT GLD     + + +   L + G+TI+   H
Sbjct: 166 LSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTH 223

Length = 305

>gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

 Score = 56.0 bits (135), Expect = 9e-10
 Identities = 26/59 (44%), Positives = 37/59 (62%)

Query: 55  LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQ 113
           LSGGQ++R++IA  L+  P ++  DEPT  LD   T Q V+++K LA  G T V   H+
Sbjct: 142 LSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHE 200

Length = 242

>gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

 Score = 55.7 bits (135), Expect = 9e-10
 Identities = 24/78 (30%), Positives = 47/78 (60%)

Query: 35  VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
           V ++LD +GL      L  +LSGG+++R++IA  +++ P ++  DEPT  LD + + + +
Sbjct: 118 VSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIM 177

Query: 95  AMLKALARGGRTIVCTIH 112
            + + + R G T++   H
Sbjct: 178 RLFEEINRLGTTVLMATH 195

Length = 223

>gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

 Score = 56.4 bits (137), Expect = 9e-10
 Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 1/59 (1%)

Query: 55  LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIH 112
           LSGG ++R+ IA+ L  NP ++  DEPTT LD     Q + +LK L R  G  ++   H
Sbjct: 154 LSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITH 212

Length = 316

>gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit

 Score = 56.6 bits (137), Expect = 1e-09
 Identities = 29/89 (32%), Positives = 47/89 (52%), Gaps = 2/89 (2%)

Query: 27  DILDTIGLVDDILDTI-GLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGL 85
             L+ +GL D +     GL         RLSGG+++RL++A  L+ + PI+ LDEPT  L
Sbjct: 443 AALERVGLADWLRALPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHL 502

Query: 86  DSNSTNQCVAMLKALARGGRTIVCTIHQP 114
           D+ + ++ +  L A   G   ++ T H  
Sbjct: 503 DAETADELLEDLLAALSGRTVVLIT-HHL 530

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530

>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA

 Score = 56.3 bits (136), Expect = 1e-09
 Identities = 27/78 (34%), Positives = 50/78 (64%), Gaps = 1/78 (1%)

Query: 35  VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
           V+++++ +GL   +H   G+LS G ++R+ +A  LI +P ++ LDEPTTGLD N   +  
Sbjct: 114 VEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIR 173

Query: 95  AMLKALARGGRTIVCTIH 112
            ++K + +  +TI+ + H
Sbjct: 174 NVIKNIGK-DKTIILSTH 190

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301

>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

 Score = 55.5 bits (134), Expect = 1e-09
 Identities = 30/109 (27%), Positives = 55/109 (50%), Gaps = 12/109 (11%)

Query: 19  YSHRISVDDIL------------DTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIA 66
           + HR  +++I+            +      ++L  +GL   + +   RLSGGQ++R++IA
Sbjct: 97  FPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIA 156

Query: 67  LELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPS 115
             L   P ++  DEPT+ LD     + +  ++ LA+  RT+V   H+ S
Sbjct: 157 RALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMS 205

Length = 250

>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 55.6 bits (134), Expect = 2e-09
 Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 2/92 (2%)

Query: 35  VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
           V   L  +GL   +  +   LSGG+KKR++IA  +   P ++ LDEPT GLD     + +
Sbjct: 118 VSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELI 177

Query: 95  AMLKALA-RGGRTIVCTIHQPSATIFEMVDHL 125
             L  L    G T++ + HQ    + EM D++
Sbjct: 178 DFLNDLPETYGMTVIFSTHQLD-LVPEMADYI 208

Length = 277

>gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 55.5 bits (134), Expect = 2e-09
 Identities = 26/58 (44%), Positives = 34/58 (58%)

Query: 55  LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112
           LSGGQ +R++IA  L   P I+ LDEPT GLD     + + + K L + G TIV   H
Sbjct: 146 LSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTH 203

Length = 280

>gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

 Score = 55.8 bits (135), Expect = 2e-09
 Identities = 23/54 (42%), Positives = 38/54 (70%)

Query: 55  LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIV 108
           LSGG+K+R++IA  ++ NPPI+ LDE T+ LD+++     A L+ ++ G  T+V
Sbjct: 400 LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLV 453

Length = 497

>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL

 Score = 54.7 bits (132), Expect = 3e-09
 Identities = 19/59 (32%), Positives = 32/59 (54%)

Query: 56  SGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQP 114
           SGG+++R++IA   I + PI+ LDEPT  LD+ +    V ++      G  ++   H  
Sbjct: 151 SGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDE 209

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224

>gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C

 Score = 53.8 bits (130), Expect = 3e-09
 Identities = 29/72 (40%), Positives = 38/72 (52%), Gaps = 8/72 (11%)

Query: 55  LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSN---STNQCVAMLKALARGGRTIVCTI 111
           LSGGQ++RL +A  L  NP I+ LDEP + LD     + NQ +A LKA    G T +   
Sbjct: 97  LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKA---AGATRIVIA 153

Query: 112 HQPSATIFEMVD 123
           H+P        D
Sbjct: 154 HRPETL--ASAD 163

This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173

>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

 Score = 55.5 bits (134), Expect = 3e-09
 Identities = 28/62 (45%), Positives = 39/62 (62%), Gaps = 1/62 (1%)

Query: 54  RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQ 113
            LSGGQ++RL+IA  L+ NPPI+ LDE T+ LD+ +       LK L + GRT +   H+
Sbjct: 465 NLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLK-GRTTLIIAHR 523

Query: 114 PS 115
            S
Sbjct: 524 LS 525

Length = 567

>gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

 Score = 55.2 bits (134), Expect = 3e-09
 Identities = 25/61 (40%), Positives = 40/61 (65%), Gaps = 2/61 (3%)

Query: 53  GR-LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTI 111
           GR LSGG+++RL IA  L+ + P++ LDEPT GLD+ +  Q + +L   A+  +T++   
Sbjct: 473 GRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQ-NKTVLMIT 531

Query: 112 H 112
           H
Sbjct: 532 H 532

Length = 574

>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

 Score = 55.3 bits (134), Expect = 3e-09
 Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 1/60 (1%)

Query: 54  RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALAR-GGRTIVCTIH 112
           +LSGG ++R+ IA+ L   P ++  DEPTT LD  +  Q + +LK L R  G  ++   H
Sbjct: 154 QLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITH 213

Length = 539

>gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional

 Score = 54.2 bits (131), Expect = 4e-09
 Identities = 25/59 (42%), Positives = 37/59 (62%)

Query: 55  LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQ 113
           LSGGQ++R++IA  L+  P ++  DEPT  LD   T Q V++++ LA  G T V   H+
Sbjct: 142 LSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHE 200

Length = 242

>gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C

 Score = 54.0 bits (130), Expect = 4e-09
 Identities = 21/41 (51%), Positives = 29/41 (70%)

Query: 53  GRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQC 93
            +LSGGQK+R++IA  LI NP ++ LDE T+ LD+ S  Q 
Sbjct: 149 SQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQV 189

TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226

>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

 Score = 54.6 bits (131), Expect = 5e-09
 Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 2/80 (2%)

Query: 35  VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
           V D L  +GL  +   L  +LSGG ++R++IA  +   P ++ LDEP + LD+N      
Sbjct: 118 VADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMR 177

Query: 95  AMLKALAR--GGRTIVCTIH 112
             + AL       TI+C  H
Sbjct: 178 EEIAALHEELPELTILCVTH 197

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362

>gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional

 Score = 54.2 bits (130), Expect = 5e-09
 Identities = 23/59 (38%), Positives = 37/59 (62%)

Query: 55  LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQ 113
           LSGGQ++R+SIA  L   P ++  DEPT+ LD     + + +++ LA  G+T+V   H+
Sbjct: 153 LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE 211

Length = 257

>gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter

 Score = 53.6 bits (130), Expect = 6e-09
 Identities = 32/135 (23%), Positives = 54/135 (40%), Gaps = 43/135 (31%)

Query: 48  KHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTI 107
           +  L G LSGG+++ L+IA  L+  P ++ LDEP+ GL                      
Sbjct: 126 RKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGL---------------------- 163

Query: 108 VCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHL 167
                 P      +V+ +             ++ L   G TI+  + Q +    E+ D  
Sbjct: 164 -----APK-----IVEEIF----------EAIRELRDEGVTIL-LVEQNARFALEIADRA 202

Query: 168 YVIAEGHCVYKGSSA 182
           YV+  G  V +G++A
Sbjct: 203 YVLERGRVVLEGTAA 217

LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222

>gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 53.6 bits (129), Expect = 7e-09
 Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 1/80 (1%)

Query: 37  DILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAM 96
            +L+ +GL         +LSGG+++R+++A      P ++F DEPT  LD  + ++   +
Sbjct: 129 ALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADL 188

Query: 97  LKALARG-GRTIVCTIHQPS 115
           L AL R  G T+V   H P 
Sbjct: 189 LFALNRERGTTLVLVTHDPQ 208

Length = 228

>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional

 Score = 53.5 bits (129), Expect = 8e-09
 Identities = 23/58 (39%), Positives = 38/58 (65%)

Query: 55  LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112
           LSGGQ++R  +A+ L  + P++ LDEPTT LD N   + + +++ L   G+T+V  +H
Sbjct: 139 LSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLH 196

Length = 255

>gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 53.8 bits (130), Expect = 8e-09
 Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 2/71 (2%)

Query: 55  LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKAL-ARGGRTIVCTIHQ 113
           LSGG +KR+++A  +  +P ++FLDEPT+GLD  S      +++ L    G T++   H 
Sbjct: 146 LSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHD 205

Query: 114 PSATIFEMVDH 124
              ++  + D 
Sbjct: 206 LD-SLLTIADR 215

Length = 263

>gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

 Score = 53.5 bits (129), Expect = 8e-09
 Identities = 25/68 (36%), Positives = 38/68 (55%)

Query: 35  VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
           + ++L  +GL          L+GG ++R+ IA  L+  P ++ LDEPT GLD  S     
Sbjct: 113 IAELLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIT 172

Query: 95  AMLKALAR 102
           A ++ALAR
Sbjct: 173 AHVRALAR 180

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236

>gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

 Score = 53.1 bits (128), Expect = 9e-09
 Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 1/82 (1%)

Query: 35  VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
           V+     +GL      L G LSGGQ++R+++A  L+   PI+ LDEP + LD     + +
Sbjct: 110 VEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEML 169

Query: 95  AMLKALARG-GRTIVCTIHQPS 115
           A++  L      T++   H P 
Sbjct: 170 ALVSQLCDERKMTLLMVTHHPE 191

Length = 231

>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein

 Score = 53.9 bits (130), Expect = 1e-08
 Identities = 21/55 (38%), Positives = 35/55 (63%)

Query: 54  RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIV 108
            LSGGQ++R++IA  ++ + PI+ LDE T+ LD+ S       L+ L +G  T++
Sbjct: 476 TLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLI 530

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576

>gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters

 Score = 52.9 bits (128), Expect = 1e-08
 Identities = 21/48 (43%), Positives = 31/48 (64%)

Query: 55  LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALAR 102
           LSGGQ++R++IA  L  NP ++  DEPT+ LD +   Q + +LK L  
Sbjct: 146 LSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQE 193

The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228

>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein

 Score = 53.3 bits (128), Expect = 1e-08
 Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 1/80 (1%)

Query: 35  VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
           V ++L  +GL     +    LSGGQK+R++IA  L  NP ++  DE T+ LD  +T   +
Sbjct: 121 VTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSIL 180

Query: 95  AMLKALARG-GRTIVCTIHQ 113
            +LK + R  G TI+   H+
Sbjct: 181 ELLKEINRRLGLTILLITHE 200

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343

>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional

 Score = 53.8 bits (130), Expect = 1e-08
 Identities = 23/55 (41%), Positives = 36/55 (65%)

Query: 54  RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIV 108
           +LSGG+++RL+IA  L+ +PPI+ LDE T+ LD  +  +  A L  L +G  T +
Sbjct: 471 QLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFI 525

Length = 588

>gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 53.1 bits (127), Expect = 1e-08
 Identities = 32/86 (37%), Positives = 47/86 (54%), Gaps = 6/86 (6%)

Query: 25  VDDILDTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTG 84
           V D L  +GL +++ D     L ++ L   LSGGQ++RL IA  L   P ++ LDEPT+ 
Sbjct: 119 VVDCLQKVGLFEEVKDK----LKQNALA--LSGGQQQRLCIARALAIKPKLLLLDEPTSA 172

Query: 85  LDSNSTNQCVAMLKALARGGRTIVCT 110
           LD  S+     +LK L+     I+ T
Sbjct: 173 LDPISSGVIEELLKELSHNLSMIMVT 198

Length = 246

>gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA

 Score = 52.3 bits (126), Expect = 2e-08
 Identities = 26/60 (43%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 54  RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIH 112
           +LS GQ+ R  IA  L+  P I+FLDEPT GLD  +       LK   R  G T++ T H
Sbjct: 153 QLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSH 212

NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236

>gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system

 Score = 52.3 bits (126), Expect = 2e-08
 Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 10/80 (12%)

Query: 22  RISVDDILDTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEP 81
           RISVD++LD +GL          +L+++    +LSGG+K+R+++A  L   P ++ LDEP
Sbjct: 109 RISVDELLDLLGL--------DHLLNRYP--AQLSGGEKQRVALARALAAQPELLLLDEP 158

Query: 82  TTGLDSNSTNQCVAMLKALA 101
            + LD     Q +  LK + 
Sbjct: 159 FSALDRALRLQLLPELKQIK 178

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214

>gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 52.3 bits (125), Expect = 2e-08
 Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 1/89 (1%)

Query: 35  VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
           VD+ L  +     +H     LS GQKKR++IA  L+     + LDEPT GLD     Q +
Sbjct: 117 VDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMI 176

Query: 95  AMLKALARGGRTIVCTIHQPSATIFEMVD 123
           A+++ +   G  ++ + H     I+E+ D
Sbjct: 177 AIIRRIVAQGNHVIISSHDID-LIYEISD 204

Length = 271

>gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 52.2 bits (126), Expect = 2e-08
 Identities = 18/52 (34%), Positives = 30/52 (57%)

Query: 35  VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLD 86
             ++L+ +GL   +     +LSGG ++R++IA  L   P ++ LDEP   LD
Sbjct: 111 AKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALD 162

Length = 248

>gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 52.5 bits (126), Expect = 2e-08
 Identities = 21/59 (35%), Positives = 32/59 (54%)

Query: 55  LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQ 113
           LSGGQK+R++IA  L   P I+  DEPT GLD    ++ + ++       +T+    H 
Sbjct: 177 LSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHT 235

Length = 320

>gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family

 Score = 52.7 bits (127), Expect = 3e-08
 Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 2/64 (3%)

Query: 55  LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKAL-ARGGRTIVCTIHQ 113
           LSGGQ++R+++A  L  +P ++ LDEP + LD          +KAL ARG   +V T H+
Sbjct: 455 LSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVIT-HR 513

Query: 114 PSAT 117
           PS  
Sbjct: 514 PSLL 517

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544

>gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 52.1 bits (125), Expect = 3e-08
 Identities = 25/60 (41%), Positives = 37/60 (61%), Gaps = 1/60 (1%)

Query: 54  RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALA-RGGRTIVCTIH 112
           ++SGGQ ++++I   L  NP I+ LDEPT GLD  S  Q + +LK+L     +TI+   H
Sbjct: 145 QMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSH 204

Length = 286

>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional

 Score = 52.4 bits (126), Expect = 3e-08
 Identities = 23/54 (42%), Positives = 35/54 (64%)

Query: 47  SKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKAL 100
           ++H      SGGQ++R++IA  LI  P ++ LDEPT+ LD     Q +A+LK+L
Sbjct: 418 TRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSL 471

Length = 529

>gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system

 Score = 51.3 bits (123), Expect = 3e-08
 Identities = 26/94 (27%), Positives = 49/94 (52%), Gaps = 3/94 (3%)

Query: 35  VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
           ++  L  +GL   +  L G LSGG+++R+++A  L+ + P++ LDEP   LD     + +
Sbjct: 109 IEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEML 168

Query: 95  AMLKALAR-GGRTIVCTIHQP--SATIFEMVDHL 125
            ++  L      T++   HQP  +  + + V  L
Sbjct: 169 DLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFL 202

Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211

>gnl|CDD|222036 pfam13304, AAA_21, AAA domain

 Score = 52.1 bits (124), Expect = 3e-08
 Identities = 25/106 (23%), Positives = 43/106 (40%), Gaps = 3/106 (2%)

Query: 13  QIISAQYSHRISVDDILDTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELI-- 70
                  + R   +  L  + LV  +     L+     L   +S G K+ L++ L L+  
Sbjct: 148 PFSFILGNLRNLRNIELKLLDLVKRLFLESDLLRLLKLLIKGISDGTKRLLALLLALLSA 207

Query: 71  -DNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPS 115
                ++ +DEP  GL      + V +LK L+  G  ++ T H P 
Sbjct: 208 LPKGSLLLIDEPENGLHPKLLRKLVELLKELSEKGAQLIFTTHSPL 253

Length = 256

>gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C

 Score = 50.8 bits (122), Expect = 3e-08
 Identities = 21/59 (35%), Positives = 39/59 (66%), Gaps = 1/59 (1%)

Query: 54  RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112
           R SGG+++RL++A  L+ + PI+ LDEPT GLD  +  Q ++++  + +  +T++   H
Sbjct: 98  RFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLK-DKTLIWITH 155

The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178

>gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

 Score = 52.0 bits (125), Expect = 3e-08
 Identities = 32/93 (34%), Positives = 51/93 (54%), Gaps = 4/93 (4%)

Query: 35  VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
           V ++LD +GL  S+    G+LSGGQ++R+++A  L  +P ++ LDEP + LD+       
Sbjct: 115 VAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLR 174

Query: 95  AMLKALAR--GGRTIVCTIHQPSATIFEMVDHL 125
             ++ L R  G  TI+ T  Q  A    M D +
Sbjct: 175 TEIRQLQRRLGVTTIMVTHDQEEA--LSMADRI 205

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353

>gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system

 Score = 51.4 bits (124), Expect = 3e-08
 Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 1/90 (1%)

Query: 35  VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
           ++++L+   +   + +    LSGG+++R+ IA  L  NP  + LDEP  G+D  +     
Sbjct: 114 LEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQ 173

Query: 95  AMLKALARGGRTIVCTIHQPSATIFEMVDH 124
            ++K L   G  ++ T H    T   + D 
Sbjct: 174 KIIKILKDRGIGVLITDHNVRET-LSITDR 202

The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232

>gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C

 Score = 51.3 bits (123), Expect = 4e-08
 Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 1/62 (1%)

Query: 55  LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQP 114
           LSGGQ++R++IA  LI NP I+  DE T+ LD  S +  +  +  +   GRT++   H+ 
Sbjct: 139 LSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDIC-AGRTVIIIAHRL 197

Query: 115 SA 116
           S 
Sbjct: 198 ST 199

The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237

>gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

 Score = 51.9 bits (125), Expect = 4e-08
 Identities = 27/66 (40%), Positives = 40/66 (60%), Gaps = 8/66 (12%)

Query: 55  LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKAL----ARGGRTIVCT 110
           LSGGQ++R+++A  L  +P ++ LDEP + LDS       A+  A+    ARGG  +V  
Sbjct: 473 LSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGE---AALAAAILAAKARGGTVVVIA 529

Query: 111 IHQPSA 116
            H+PSA
Sbjct: 530 -HRPSA 534

Length = 580

>gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 51.5 bits (123), Expect = 5e-08
 Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 1/62 (1%)

Query: 53  GRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112
           G+LSGGQ++RL IA  L   P ++  DEPT  LD  +T +  ++   L +   TIV   H
Sbjct: 145 GKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTH 203

Query: 113 QP 114
            P
Sbjct: 204 FP 205

Length = 250

>gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 51.4 bits (123), Expect = 5e-08
 Identities = 25/58 (43%), Positives = 36/58 (62%), Gaps = 1/58 (1%)

Query: 55  LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112
           LSGGQ++RL +A  L   P I+ LDEPT+ LD  +T +   +++ L RG  TI+   H
Sbjct: 183 LSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQEL-RGSYTIMIVTH 239

Length = 286

>gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 51.1 bits (122), Expect = 6e-08
 Identities = 27/65 (41%), Positives = 37/65 (56%), Gaps = 1/65 (1%)

Query: 54  RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQ 113
           RLSGGQ++RL IA  L   P ++ LDEPT+ LD  +T +   +L+ L+    TIV   H 
Sbjct: 146 RLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHN 204

Query: 114 PSATI 118
               I
Sbjct: 205 IGQAI 209

Length = 250

>gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 51.4 bits (123), Expect = 6e-08
 Identities = 21/58 (36%), Positives = 32/58 (55%)

Query: 55  LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112
           LSGGQ +R++IA  +   P I+ LDEP  GLD     + + + K   + G T++   H
Sbjct: 146 LSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTH 203

Length = 287

>gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system

 Score = 50.6 bits (122), Expect = 6e-08
 Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 4/72 (5%)

Query: 21  HRISVDDILDTIGLVDDILDTIGL--VLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFL 78
           H I + + LD    V++ L    L   +        LSGGQ++RL +A  L + P ++ L
Sbjct: 108 HGIKLKEELDER--VEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLL 165

Query: 79  DEPTTGLDSNST 90
           DEPT+ LD  ST
Sbjct: 166 DEPTSALDPIST 177

Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227

>gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

 Score = 51.1 bits (123), Expect = 7e-08
 Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 4/95 (4%)

Query: 35  VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
           V++ L+ +GL         +LSGGQ++R+++A  L+  P ++ LDEP + LD+    Q  
Sbjct: 117 VEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMR 176

Query: 95  AMLKALAR--GGRTIVCTIHQPSATIFEMVDHLGL 127
             LK L R  G   +  T  Q  A    M D + +
Sbjct: 177 KELKELQRELGITFVYVTHDQEEA--LAMSDRIAV 209

Length = 352

>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein

 Score = 50.6 bits (121), Expect = 7e-08
 Identities = 22/65 (33%), Positives = 38/65 (58%)

Query: 37  DILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAM 96
           ++LD +GL      +  +LSGGQ++R++IA  L   P +M  DE T+ LD     + + +
Sbjct: 129 ELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNV 188

Query: 97  LKALA 101
           ++ LA
Sbjct: 189 IRRLA 193

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252

>gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

 Score = 51.4 bits (124), Expect = 7e-08
 Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 1/61 (1%)

Query: 53  GRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112
             LS GQ +RL++A  L+    ++ LDEPT  LD++S    +  L A +R   T++ T H
Sbjct: 484 AGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVT-H 542

Query: 113 Q 113
           Q
Sbjct: 543 Q 543

Length = 588

>gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter

 Score = 50.4 bits (121), Expect = 7e-08
 Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 2/60 (3%)

Query: 53  GRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112
             LSGG+++R++IA  L+ NP I+ LDEP + LD  +  +    LK + +     V  +H
Sbjct: 128 ETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTV--LH 185

Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235

>gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like

 Score = 50.2 bits (121), Expect = 8e-08
 Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 1/82 (1%)

Query: 35  VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
           V ++L+ +GL    +     LSGGQ++R+++A  L   P ++ LDEP + LD+    +  
Sbjct: 111 VRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELR 170

Query: 95  AMLKAL-ARGGRTIVCTIHQPS 115
             LK L    G T +   H   
Sbjct: 171 EELKELQRELGITTIYVTHDQE 192

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213

>gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein

 Score = 50.4 bits (121), Expect = 8e-08
 Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 1/59 (1%)

Query: 54  RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112
            LSGGQ++RL IA  L   P ++ LDEPT+ LD  +T +   +++ L +   TIV   H
Sbjct: 144 GLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQEL-KKKYTIVIVTH 201

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247

>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein

 Score = 50.2 bits (120), Expect = 9e-08
 Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 1/82 (1%)

Query: 35  VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
           V D    +G+      L  +LSGGQ++R+++A  L+   PI+ LDEP + LD     + +
Sbjct: 109 VVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEML 168

Query: 95  AMLKALA-RGGRTIVCTIHQPS 115
           A++K L     RT++   H  S
Sbjct: 169 ALVKQLCSERQRTLLMVTHHLS 190

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213

>gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter

 Score = 50.0 bits (120), Expect = 9e-08
 Identities = 22/73 (30%), Positives = 42/73 (57%), Gaps = 1/73 (1%)

Query: 55  LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQP 114
           LS G ++++     +I +P ++ LDEP +GLD  +      +++ LAR G+T++ + HQ 
Sbjct: 129 LSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQ- 187

Query: 115 SATIFEMVDHLGL 127
              + E+ D + L
Sbjct: 188 MELVEELCDRVLL 200

This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210

>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

 Score = 50.7 bits (122), Expect = 1e-07
 Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 5/55 (9%)

Query: 35  VDDILDTIGL---VLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLD 86
           V ++L+ +GL    L ++     LSGGQ++R++IA  L   P ++ LDEP + LD
Sbjct: 409 VAELLELVGLPPEFLDRY--PHELSGGQRQRVAIARALALEPKLLILDEPVSALD 461

Length = 539

>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein

 Score = 50.0 bits (120), Expect = 1e-07
 Identities = 19/54 (35%), Positives = 32/54 (59%)

Query: 53  GRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRT 106
             LSGG+++R++IA  L++ P ++  DEPT  LD+N+      ++  L R   T
Sbjct: 140 SELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNT 193

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221

>gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein

 Score = 50.9 bits (122), Expect = 1e-07
 Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 9/72 (12%)

Query: 49  HTLCG----RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKAL-ARG 103
            T  G    +LSGGQK+R++IA  L+  P ++ LDE T+ LD+    +C  +L+   +R 
Sbjct: 608 DTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDA----ECEQLLQESRSRA 663

Query: 104 GRTIVCTIHQPS 115
            RT++   H+ S
Sbjct: 664 SRTVLLIAHRLS 675

[Transport and binding proteins, Other]. Length = 711

>gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 50.2 bits (120), Expect = 1e-07
 Identities = 25/63 (39%), Positives = 34/63 (53%), Gaps = 1/63 (1%)

Query: 53  GRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112
             LSGGQ++RL IA  L   P I+ +DEPT  +D   T +   +L  L +   TIV   H
Sbjct: 148 SNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFEL-KKEYTIVLVTH 206

Query: 113 QPS 115
            P+
Sbjct: 207 SPA 209

Length = 253

>gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional

 Score = 50.6 bits (122), Expect = 1e-07
 Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 1/80 (1%)

Query: 35  VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
           V ++L+ +GL         +LSGGQK+R++IA  L  NP ++  DE T+ LD  +T   +
Sbjct: 121 VTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSIL 180

Query: 95  AMLKALARG-GRTIVCTIHQ 113
            +LK + R  G TIV   H+
Sbjct: 181 ELLKDINRELGLTIVLITHE 200

Length = 343

>gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed

 Score = 50.6 bits (121), Expect = 1e-07
 Identities = 22/58 (37%), Positives = 35/58 (60%)

Query: 55  LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112
           LSGG+++R+ +A  L    P++ LDEPT  LD N   + + +++ L   G+T V  IH
Sbjct: 140 LSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIH 197

Length = 402

>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

 Score = 50.6 bits (122), Expect = 1e-07
 Identities = 22/72 (30%), Positives = 37/72 (51%)

Query: 37  DILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAM 96
           ++L  +GL +   TL G LS  Q++ + IA  L  +  ++ LDEPT  L    T +   +
Sbjct: 128 ELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDL 187

Query: 97  LKALARGGRTIV 108
           ++ L   G  I+
Sbjct: 188 IRRLKAQGVAII 199

Length = 500

>gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 50.1 bits (119), Expect = 1e-07
 Identities = 22/58 (37%), Positives = 37/58 (63%)

Query: 55  LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112
           LSGGQ +R++IA  L   P ++ LDEPT GLD  +  + + + +++ + G+T+V   H
Sbjct: 145 LSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTH 202

Length = 288

>gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 49.7 bits (118), Expect = 2e-07
 Identities = 30/92 (32%), Positives = 52/92 (56%), Gaps = 3/92 (3%)

Query: 22  RISVDDILDTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEP 81
           ++ +DDI+++     D+ D I   + K  L   LSGGQ++RL IA  L   P ++ +DEP
Sbjct: 120 KLEIDDIVESALKDADLWDEIKHKIHKSAL--DLSGGQQQRLCIARALAVKPKVLLMDEP 177

Query: 82  TTGLDSNSTNQCVAMLKALA-RGGRTIVCTIH 112
             GLD  ++ +  +++++L  R   T+V   H
Sbjct: 178 CFGLDPIASMKVESLIQSLRLRSELTMVIVSH 209

Length = 261

>gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 49.7 bits (119), Expect = 2e-07
 Identities = 24/78 (30%), Positives = 39/78 (50%)

Query: 35  VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
           V++ L  + +   +      LS GQKKR++IA  L  +P ++ LDEP   LD       +
Sbjct: 119 VEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLM 178

Query: 95  AMLKALARGGRTIVCTIH 112
            +L  L   G+T++   H
Sbjct: 179 EILDRLHNQGKTVIVATH 196

Length = 274

>gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 49.6 bits (119), Expect = 2e-07
 Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 1/60 (1%)

Query: 55  LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALAR-GGRTIVCTIHQ 113
           LSGGQ +R++IA  L   P ++ LDEPT GLD     + + M   L +  G T V   H 
Sbjct: 146 LSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHS 205

Length = 290

>gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 49.4 bits (118), Expect = 2e-07
 Identities = 20/36 (55%), Positives = 27/36 (75%)

Query: 55  LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNST 90
           LSGG+ +R+SIA  L +NP ++ LDEPT+ LD  ST
Sbjct: 132 LSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTST 167

Length = 241

>gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 49.1 bits (117), Expect = 2e-07
 Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 7/88 (7%)

Query: 25  VDDILDTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTG 84
           V+  L  + L D++ D +      HT    LSGGQ++RL IA  L  NP ++ +DEPT+ 
Sbjct: 132 VEKSLKDVALWDEVKDRL------HTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSA 185

Query: 85  LDSNSTNQCVAMLKALARGGRTIVCTIH 112
           LD  ST +   ++  L +   TIV   H
Sbjct: 186 LDPVSTRKIEELILKL-KEKYTIVIVTH 212

Length = 259

>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional

 Score = 50.0 bits (119), Expect = 3e-07
 Identities = 24/44 (54%), Positives = 31/44 (70%), Gaps = 4/44 (9%)

Query: 50  TLCG----RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNS 89
           TL G    +LSGGQK+R+SIA  +I NP I+ LDE T+ LD+ S
Sbjct: 571 TLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKS 614

Length = 1466

>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F

 Score = 47.8 bits (115), Expect = 3e-07
 Identities = 18/32 (56%), Positives = 25/32 (78%)

Query: 55  LSGGQKKRLSIALELIDNPPIMFLDEPTTGLD 86
           LSGG+K RL++A  L++NP ++ LDEPT  LD
Sbjct: 71  LSGGEKMRLALAKLLLENPNLLLLDEPTNHLD 102

Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144

>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

 Score = 49.6 bits (119), Expect = 3e-07
 Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 35  VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLD 86
            ++ L  +G    +      LSGG ++R+++A  L++ P ++ LDEPT  LD
Sbjct: 135 AEEALLGLGF-PDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLD 185

Length = 530

>gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 49.3 bits (118), Expect = 3e-07
 Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 7/63 (11%)

Query: 54  RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKAL----ARGGRTIVC 109
           +LS GQ+ R  +A  L+  P ++FLDEPT GLD N+      + + L         T++ 
Sbjct: 156 KLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQ---ANIREFLKEYNEERQATVLL 212

Query: 110 TIH 112
           T H
Sbjct: 213 TTH 215

Length = 325

>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

 Score = 49.6 bits (119), Expect = 3e-07
 Identities = 20/45 (44%), Positives = 31/45 (68%)

Query: 56  SGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKAL 100
           SGGQ++R++IA  LI  P ++ LDEPT+ LD +   Q + +L+ L
Sbjct: 428 SGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDL 472

Length = 534

>gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 48.9 bits (116), Expect = 3e-07
 Identities = 30/82 (36%), Positives = 44/82 (53%), Gaps = 6/82 (7%)

Query: 29  LDTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSN 88
           L  +GL D + D     LS      RLSGGQ++ L +A  L  NP ++ LDEPT+ LD  
Sbjct: 144 LTEVGLWDAVKDR----LSDSPF--RLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPT 197

Query: 89  STNQCVAMLKALARGGRTIVCT 110
           +T +    +++LA     I+ T
Sbjct: 198 TTEKIEEFIRSLADRLTVIIVT 219

Length = 276

>gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 48.7 bits (117), Expect = 3e-07
 Identities = 29/87 (33%), Positives = 37/87 (42%), Gaps = 22/87 (25%)

Query: 19  YSHRI--SVDDILDTI-----------GLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSI 65
           Y  R+    D  LD I             V D L    L          LSGGQ++RL I
Sbjct: 110 YGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSAL---------GLSGGQQQRLCI 160

Query: 66  ALELIDNPPIMFLDEPTTGLDSNSTNQ 92
           A  L   P ++ +DEPT+ LD  ST +
Sbjct: 161 ARALAVKPEVLLMDEPTSALDPISTLK 187

Length = 253

>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional

 Score = 49.6 bits (118), Expect = 4e-07
 Identities = 21/35 (60%), Positives = 27/35 (77%)

Query: 55   LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNS 89
            LSGGQK+R++IA  L+  P I+ LDE T+ LDSNS
Sbjct: 1359 LSGGQKQRIAIARALLREPKILLLDEATSSLDSNS 1393

Length = 1466

>gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

 Score = 48.6 bits (117), Expect = 4e-07
 Identities = 34/137 (24%), Positives = 53/137 (38%), Gaps = 46/137 (33%)

Query: 48  KHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTI 107
           ++   G LSGG+++ L+IA  L+  P ++ LDEP+ GL                      
Sbjct: 130 RNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGL---------------------- 167

Query: 108 VCTIHQPS--ATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVD 165
                 P     IFE               +  L+    GG TI+  + Q +    E+ D
Sbjct: 168 -----APKIVEEIFEA--------------IKELR--KEGGMTIL-LVEQNARFALEIAD 205

Query: 166 HLYVIAEGHCVYKGSSA 182
             YV+  G  V  G++A
Sbjct: 206 RGYVLENGRIVLSGTAA 222

Length = 237

>gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only]

 Score = 48.4 bits (116), Expect = 4e-07
 Identities = 18/52 (34%), Positives = 30/52 (57%)

Query: 35  VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLD 86
           +D +L+   +   + +    LSGG+++R+ IA  L  NP  + LDEP  G+D
Sbjct: 120 LDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVD 171

Length = 243

>gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein

 Score = 49.2 bits (118), Expect = 5e-07
 Identities = 28/67 (41%), Positives = 37/67 (55%), Gaps = 10/67 (14%)

Query: 33  GLVDDILDT-IGLVLSKHTLC----GRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDS 87
           GL +DI    +G+    HT+     G LSGGQ++RL IA  L+  P I+  DE T+ LD 
Sbjct: 566 GLAEDIRAMPMGM----HTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALD- 620

Query: 88  NSTNQCV 94
           N T   V
Sbjct: 621 NRTQAIV 627

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686

>gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

 Score = 48.5 bits (116), Expect = 5e-07
 Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 2/62 (3%)

Query: 55  LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALA--RGGRTIVCTIH 112
           LS G+++R+ IA  L+ +P ++ LDEP  GLD  +  Q +  L+ LA   G   ++   H
Sbjct: 172 LSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTH 231

Query: 113 QP 114
             
Sbjct: 232 HA 233

Length = 257

>gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

 Score = 48.0 bits (115), Expect = 6e-07
 Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 6/72 (8%)

Query: 55  LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQ 113
           LSGGQ++R++IA  LI  P ++ LDEPT+ LD +   Q + +L  L +  G T +   H 
Sbjct: 142 LSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHD 201

Query: 114 PSATIFEMVDHL 125
                  +V+H+
Sbjct: 202 -----LALVEHM 208

Length = 252

>gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 47.7 bits (113), Expect = 8e-07
 Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 7/88 (7%)

Query: 25  VDDILDTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTG 84
           V++ L    L D++ D +        L   LSGGQ++RL IA  L  +P I+  DEPT+ 
Sbjct: 138 VENALRNAALWDEVKDRL------GDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSA 191

Query: 85  LDSNSTNQCVAMLKALARGGRTIVCTIH 112
           LD  +T     ++  L +   TI+   H
Sbjct: 192 LDPIATASIEELISDL-KNKVTILIVTH 218

Length = 265

>gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins

 Score = 46.6 bits (111), Expect = 9e-07
 Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 6/81 (7%)

Query: 49  HTLCGRLSGGQKKRLSIALEL----IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGG 104
                +LSGG+K+  ++AL L    +   P+  LDE   GLD          +      G
Sbjct: 72  IFTRLQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKG 131

Query: 105 RTIVCTIHQPSATIFEMVDHL 125
             ++   H P   + E+ D L
Sbjct: 132 AQVIVITHLP--ELAELADKL 150

ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162

>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional

 Score = 48.1 bits (115), Expect = 9e-07
 Identities = 27/64 (42%), Positives = 39/64 (60%), Gaps = 2/64 (3%)

Query: 55  LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQP 114
           LSGGQ++R++IA  L+ + PI+ LDE T+ LD+ S     A L  L +  RT +   H+ 
Sbjct: 481 LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRL 539

Query: 115 SATI 118
           S TI
Sbjct: 540 S-TI 542

Length = 582

>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter

 Score = 47.7 bits (113), Expect = 1e-06
 Identities = 25/79 (31%), Positives = 45/79 (56%), Gaps = 1/79 (1%)

Query: 35   VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
            ++ +L+  GL   ++     LSGG +++LS+A+  + +  ++ LDEPT+G+D  S     
Sbjct: 1042 MEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIW 1101

Query: 95   AMLKALARGGRTIVCTIHQ 113
             +L    R GRTI+ + H 
Sbjct: 1102 DLLLKY-RSGRTIIMSTHH 1119

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272

>gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 47.7 bits (114), Expect = 1e-06
 Identities = 19/32 (59%), Positives = 24/32 (75%)

Query: 55  LSGGQKKRLSIALELIDNPPIMFLDEPTTGLD 86
           LSGGQK+R++IA  +   P I+ LDEPT GLD
Sbjct: 145 LSGGQKRRVAIAGVVAMEPKILILDEPTAGLD 176

Length = 287

>gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system

 Score = 47.6 bits (114), Expect = 1e-06
 Identities = 17/48 (35%), Positives = 28/48 (58%)

Query: 39  LDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLD 86
           L+ +GL   +H     LSGG ++R+ +A  L  +P I+ +DE  + LD
Sbjct: 145 LELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALD 192

This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269

>gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 47.3 bits (112), Expect = 1e-06
 Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 10/80 (12%)

Query: 55  LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCT--IH 112
           LSGGQ++RL IA  L   P I+ +DEPT+ LD  ST +   ++  L +    I+ T  +H
Sbjct: 149 LSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMH 208

Query: 113 QPS----ATIF----EMVDH 124
           Q +     T F    ++V+H
Sbjct: 209 QAARVSDTTSFFLVGDLVEH 228

Length = 252

>gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein

 Score = 47.6 bits (114), Expect = 1e-06
 Identities = 28/64 (43%), Positives = 37/64 (57%), Gaps = 4/64 (6%)

Query: 55  LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQP 114
           LSGGQ++RL IA  L+ NP I+ LDE T+ LD   T + +     L R G T +   H+ 
Sbjct: 616 LSGGQRQRLEIARALVRNPSILILDEATSALDP-ETEKII--DDNLRRRGCTCIIVAHRL 672

Query: 115 SATI 118
           S TI
Sbjct: 673 S-TI 675

This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710

>gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional

 Score = 47.0 bits (112), Expect = 1e-06
 Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 1/58 (1%)

Query: 55  LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112
           LSGGQ++RL IA  +   P I+ +DEP + LD  ST Q    +  L +   TI+   H
Sbjct: 164 LSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFEL-KKNYTIIIVTH 220

Length = 267

>gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 46.9 bits (111), Expect = 1e-06
 Identities = 32/94 (34%), Positives = 47/94 (50%), Gaps = 8/94 (8%)

Query: 24  SVDDILDTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTT 83
           +V+  L    + D++ D +      H     LSGGQ++R+ IA  L   P ++ LDEPT+
Sbjct: 124 AVETSLKQAAIWDEVKDHL------HESALSLSGGQQQRVCIARVLAVKPDVILLDEPTS 177

Query: 84  GLDSNSTNQCVAMLKALARGGRTIVCT--IHQPS 115
            LD  S+ Q   ML  L      I+ T  +HQ S
Sbjct: 178 ALDPISSTQIENMLLELRDQYTIILVTHSMHQAS 211

Length = 252

>gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional

 Score = 46.4 bits (110), Expect = 2e-06
 Identities = 29/79 (36%), Positives = 38/79 (48%)

Query: 39  LDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLK 98
           L  +GL   + TL  +LS GQKKRL++A   +   P+  LDEP   LD         M+ 
Sbjct: 122 LAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMIS 181

Query: 99  ALARGGRTIVCTIHQPSAT 117
           A  RGG   + T H   A 
Sbjct: 182 AHLRGGGAALVTTHGAYAA 200

Length = 214

>gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

 Score = 46.9 bits (112), Expect = 2e-06
 Identities = 31/83 (37%), Positives = 46/83 (55%), Gaps = 7/83 (8%)

Query: 35  VDDILDTIGLVLSKHTLCGR----LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNST 90
            D++LD +GL  S+     R    LSGGQ++R+ +A  L  +PPI+ +DEP   LD  + 
Sbjct: 114 ADELLDLVGLDPSE--YADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITR 171

Query: 91  NQCVAMLKALARG-GRTIVCTIH 112
            Q    +K L +  G+TIV   H
Sbjct: 172 KQLQEEIKELQKELGKTIVFVTH 194

Length = 309

>gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 46.6 bits (110), Expect = 2e-06
 Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 1/58 (1%)

Query: 55  LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112
           LSGGQ++RL IA  +  +P ++ +DEP + LD  ST +   ++  L +   TIV   H
Sbjct: 147 LSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHEL-KKDYTIVIVTH 203

Length = 250

>gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional

 Score = 47.0 bits (112), Expect = 2e-06
 Identities = 32/86 (37%), Positives = 43/86 (50%), Gaps = 10/86 (11%)

Query: 49  HTLCG----RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGG 104
           +T  G     LS GQK+ L++A  L+  P I+ LDE T  +DS  T Q +    A  R  
Sbjct: 467 YTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDS-GTEQAIQQALAAVREH 525

Query: 105 RTIVCTIHQPSATIFE----MVDHLG 126
            T+V   H+ S TI E    +V H G
Sbjct: 526 TTLVVIAHRLS-TIVEADTILVLHRG 550

Length = 592

>gnl|CDD|234806 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional

 Score = 47.1 bits (112), Expect = 2e-06
 Identities = 37/125 (29%), Positives = 59/125 (47%), Gaps = 19/125 (15%)

Query: 6   HGTIWCWQIISAQYSHRISVDDILDTIGLVDD--ILDTIGLVLSKHTLC---------GR 54
            G  +  Q++  +Y  + ++ DIL+      +   LD   +    H LC         GR
Sbjct: 747 LGKRFLPQVLEVRYKGK-NIADILEMTAYEAEKFFLDEPSIHEKIHALCSLGLDYLPLGR 805

Query: 55  ----LSGGQKKRLSIALELI---DNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTI 107
               LSGG+ +RL +A EL+     P +  LDEPTTGL ++     + +L++L   G T+
Sbjct: 806 PLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTV 865

Query: 108 VCTIH 112
           V   H
Sbjct: 866 VIIEH 870

Length = 1809

>gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C

 Score = 46.1 bits (110), Expect = 2e-06
 Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 2/66 (3%)

Query: 53  GRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112
           G LS G+++ L+IA  ++ +P I+ LDE T+ +D+ +       L+ L   GRT +   H
Sbjct: 138 GNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKL-MKGRTSIIIAH 196

Query: 113 QPSATI 118
           + S TI
Sbjct: 197 RLS-TI 201

Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229

>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

 Score = 46.5 bits (111), Expect = 3e-06
 Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 7/55 (12%)

Query: 49  HTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG 103
               G LSGG+K RL +A  L+  P ++ LDEPT  LD       +  L+AL   
Sbjct: 434 EKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLD-------IESLEALEEA 481

Length = 530

>gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 46.1 bits (109), Expect = 3e-06
 Identities = 31/88 (35%), Positives = 46/88 (52%), Gaps = 7/88 (7%)

Query: 25  VDDILDTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTG 84
           V+  L    L D++ D     L K  L  +LSGGQ++RL IA  +   P ++ +DEPT+ 
Sbjct: 124 VEWALKKAALWDEVKDD----LKKSAL--KLSGGQQQRLCIARTIAVKPDVILMDEPTSA 177

Query: 85  LDSNSTNQCVAMLKALARGGRTIVCTIH 112
           LD  ST +   ++  L +   TIV   H
Sbjct: 178 LDPISTLKIEDLMVELKK-EYTIVIVTH 204

Length = 251

>gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 46.2 bits (109), Expect = 3e-06
 Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 7/90 (7%)

Query: 25  VDDILDTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTG 84
           V++ L  +GL  ++ D +      ++   +LSGGQ++RL+IA  L   P ++ +DEPT+ 
Sbjct: 130 VEECLRKVGLWKEVYDRL------NSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSM 183

Query: 85  LDSNSTNQCVAMLKALARGGRTIVCTIHQP 114
           +D  ++ Q +  L    +    IV   H P
Sbjct: 184 IDIVNS-QAIEKLITELKNEIAIVIVSHNP 212

Length = 257

>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein

 Score = 46.8 bits (111), Expect = 3e-06
 Identities = 25/62 (40%), Positives = 37/62 (59%), Gaps = 1/62 (1%)

Query: 54  RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQ 113
           RLSGG+++RL+IA  ++ N PI+ LDE T+ LD  +  +    + AL R  RT     H+
Sbjct: 471 RLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDAL-RKNRTTFIIAHR 529

Query: 114 PS 115
            S
Sbjct: 530 LS 531

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585

>gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional

 Score = 46.2 bits (109), Expect = 3e-06
 Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 1/76 (1%)

Query: 39  LDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLK 98
           L  +G+V   H     LSGGQ++R++IA  L+    ++  DEP   LD  S    +  L+
Sbjct: 137 LTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLR 196

Query: 99  ALARG-GRTIVCTIHQ 113
            + +  G T+V T+HQ
Sbjct: 197 DINQNDGITVVVTLHQ 212

Length = 262

>gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50

 Score = 45.7 bits (109), Expect = 3e-06
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 6/59 (10%)

Query: 53  GRLSGGQKKRLSIALEL------IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGR 105
           GR SGG+K   S+ + L        N  I+ LDEPTT LD  +  + +A +    +  +
Sbjct: 114 GRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQK 172

The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. Length = 204

>gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system

 Score = 45.1 bits (108), Expect = 3e-06
 Identities = 17/54 (31%), Positives = 34/54 (62%)

Query: 55  LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIV 108
           LSGG ++++ +A  L  +P ++ LDEPT G+D  +  +   +++ LA  G+ ++
Sbjct: 105 LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVL 158

This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182

>gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 46.1 bits (109), Expect = 3e-06
 Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 6/86 (6%)

Query: 25  VDDILDTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTG 84
           V++ L    L D++ D +      H+    LSGGQ++RL IA  L   P ++ LDEP + 
Sbjct: 141 VEESLTKAALWDEVKDRL------HSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASA 194

Query: 85  LDSNSTNQCVAMLKALARGGRTIVCT 110
           LD  S  +   ++  L      I+ T
Sbjct: 195 LDPISNAKIEELITELKEEYSIIIVT 220

Length = 268

>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2

 Score = 46.3 bits (110), Expect = 3e-06
 Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 55  LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQ 113
           LSGG+K+R+ +A +L   P +   DEPT  LD  +       L+   +  G ++V T H 
Sbjct: 169 LSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHW 228

Query: 114 P 114
           P
Sbjct: 229 P 229

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520

>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

 Score = 46.0 bits (110), Expect = 4e-06
 Identities = 20/62 (32%), Positives = 36/62 (58%)

Query: 47  SKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRT 106
           S     G LSGG ++++ +A  L  +P ++ LDEPT G+D  +  +   +++ LA  G+ 
Sbjct: 394 SPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKA 453

Query: 107 IV 108
           I+
Sbjct: 454 IL 455

Length = 500

>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

 Score = 46.1 bits (110), Expect = 4e-06
 Identities = 21/48 (43%), Positives = 30/48 (62%)

Query: 55  LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALAR 102
           LSGGQ++R+ IA+ L + P ++  DEPTT LD     Q + +LK L  
Sbjct: 158 LSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQA 205

Length = 534

>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit

 Score = 45.9 bits (109), Expect = 4e-06
 Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 2/77 (2%)

Query: 55  LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQ 113
           LSGGQ++R+++A  L+  P I+ LDEP + LD    +Q    LK +    G T V   H 
Sbjct: 101 LSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHD 160

Query: 114 PSATIFEMVDHLGLDSN 130
               +  M D + +   
Sbjct: 161 QEEAM-TMSDRIAIMRK 176

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325

>gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters

 Score = 45.2 bits (108), Expect = 4e-06
 Identities = 17/52 (32%), Positives = 34/52 (65%)

Query: 35  VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLD 86
            +++L+ +GL   ++    +LSGG ++R+++A  L  +P ++ LDEP + LD
Sbjct: 112 AEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALD 163

NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220

>gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional

 Score = 45.6 bits (108), Expect = 4e-06
 Identities = 22/66 (33%), Positives = 39/66 (59%)

Query: 37  DILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAM 96
           ++L  +GL    +     LSGG+++R++IA  L++NP ++  DEPT  LD+ + +    +
Sbjct: 128 EMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQL 187

Query: 97  LKALAR 102
           L  L R
Sbjct: 188 LGELNR 193

Length = 233

>gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional

 Score = 45.5 bits (108), Expect = 4e-06
 Identities = 19/36 (52%), Positives = 25/36 (69%)

Query: 55  LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNST 90
           LSGGQ++RL IA  L   P ++ +DEPT+ LD  ST
Sbjct: 147 LSGGQQQRLCIARALAVEPEVLLMDEPTSALDPIST 182

Length = 250

>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D

 Score = 45.5 bits (108), Expect = 4e-06
 Identities = 20/54 (37%), Positives = 33/54 (61%)

Query: 34  LVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDS 87
           +V++ +  +GL  +     G+LSGG K+R++IA  L   P ++ LDEP   LD+
Sbjct: 94  IVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDA 147

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230

>gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional

 Score = 45.3 bits (107), Expect = 5e-06
 Identities = 23/78 (29%), Positives = 41/78 (52%)

Query: 35  VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
           V   LD +GL+        +LSGG+++R+ IA  +++ P ++  DEPT  LD   +   +
Sbjct: 118 VSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGIL 177

Query: 95  AMLKALARGGRTIVCTIH 112
            + +   R G T++   H
Sbjct: 178 RLFEEFNRVGVTVLMATH 195

Length = 222

>gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

 Score = 45.3 bits (108), Expect = 5e-06
 Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 17/82 (20%)

Query: 25  VDDILDTIGLVDDILDTIGLVLSKHTLCGR----LSGGQKKRLSIALELIDNPPIMFLDE 80
           V ++L+ +GL ++ L              R    LSGGQ++R+ IA  L  NP ++  DE
Sbjct: 89  VLELLEKVGLPEEFLY-------------RYPHELSGGQRQRIGIARALALNPKLIVADE 135

Query: 81  PTTGLDSNSTNQCVAMLKALAR 102
           P + LD +   Q + +LK L  
Sbjct: 136 PVSALDVSVQAQILNLLKDLQE 157

Length = 268

>gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

 Score = 45.7 bits (109), Expect = 5e-06
 Identities = 29/100 (29%), Positives = 51/100 (51%), Gaps = 8/100 (8%)

Query: 35  VDDILDTIGL--VLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQ 92
           V ++   +GL  +L++  L   LSGGQ++R+++A  L+  P +  LDEP + LD+     
Sbjct: 114 VKEVAKLLGLEHLLNRKPLQ--LSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVL 171

Query: 93  CVAMLKAL-ARGGRTIVCTIH-QPSATIFEMVDHLGLDSN 130
             + +K L  R G T +   H Q  A      D + + ++
Sbjct: 172 MRSEIKKLHERLGTTTIYVTHDQVEAMTLA--DRIVVMND 209

Length = 338

>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 45.6 bits (108), Expect = 5e-06
 Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 1/82 (1%)

Query: 32  IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTN 91
           I +V D+L  +G++    +    LSGGQK+R++IA  L   P I+ LDE T+ LD     
Sbjct: 121 IKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKE 180

Query: 92  QCVAMLKALAR-GGRTIVCTIH 112
           Q + +++ L +    T++   H
Sbjct: 181 QILKLIRKLKKKNNLTVISITH 202

Length = 282

>gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 45.2 bits (107), Expect = 6e-06
 Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 12/89 (13%)

Query: 29  LDTIGLVDDILDTIGLVLSKHTLCGRL-------SGGQKKRLSIALELIDNPPIMFLDEP 81
           LD I  V+  L ++GL      L  RL       SGGQ++RL IA  +   P ++ +DEP
Sbjct: 122 LDEI--VEKSLTSVGLW---EELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEP 176

Query: 82  TTGLDSNSTNQCVAMLKALARGGRTIVCT 110
            + LD  +TN    +++ L +    IV T
Sbjct: 177 CSALDPVATNVIENLIQELKKNFTIIVVT 205

Length = 251

>gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE

 Score = 45.2 bits (108), Expect = 6e-06
 Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 1/57 (1%)

Query: 53  GRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALA-RGGRTIV 108
           G LSGGQ+++L+IA  L+  P ++ LDEPT G+  +       +++ L   GG  I+
Sbjct: 130 GDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAIL 186

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230

>gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

 Score = 45.4 bits (108), Expect = 6e-06
 Identities = 16/52 (30%), Positives = 28/52 (53%)

Query: 35  VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLD 86
             + L+ +GL          LSGG ++R+ +A  L ++P I+ +DE  + LD
Sbjct: 145 ALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALD 196

Length = 386

>gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system

 Score = 44.3 bits (106), Expect = 6e-06
 Identities = 15/54 (27%), Positives = 27/54 (50%)

Query: 55  LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIV 108
           LS G+++ + IA  L  N  ++ LDEPT  L      +   +++ L   G  ++
Sbjct: 83  LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVI 136

This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163

>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein

 Score = 45.2 bits (107), Expect = 6e-06
 Identities = 22/58 (37%), Positives = 37/58 (63%)

Query: 55  LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112
           LSGG+++R+ +A  L   P ++ LDEPT  LD  +  + +A+++ LA  G T+V  +H
Sbjct: 138 LSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALH 195

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256

>gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter

 Score = 44.9 bits (107), Expect = 6e-06
 Identities = 20/52 (38%), Positives = 32/52 (61%)

Query: 35  VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLD 86
           V + LD + L    +    +LSGGQ++R++IA  L++ P ++ LDEP   LD
Sbjct: 111 VAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALD 162

PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232

>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein

 Score = 45.5 bits (108), Expect = 7e-06
 Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 10/83 (12%)

Query: 20  SHRISVDDILDTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLD 79
             RIS + +++ +G        IG +L +    GRLSGG+K+R++I   L+ +P ++ +D
Sbjct: 107 ERRISFERVIELLG--------IGHLLGRLP--GRLSGGEKQRVAIGRALLSSPRLLLMD 156

Query: 80  EPTTGLDSNSTNQCVAMLKALAR 102
           EP   LD     + +  L+ L  
Sbjct: 157 EPLAALDDPRKYEILPYLERLHA 179

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354

>gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 45.2 bits (107), Expect = 7e-06
 Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 12/86 (13%)

Query: 35  VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
           V D LD+ GL          LSGGQ++RL IA  +  +P ++ +DEP + LD  +T++  
Sbjct: 170 VKDQLDSSGL---------DLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIE 220

Query: 95  AMLKALARGGRTIVCTIH--QPSATI 118
            +++ LA    T+V   H  Q +A I
Sbjct: 221 DLIEELAE-EYTVVIVTHNMQQAARI 245

Length = 285

>gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA

 Score = 44.2 bits (105), Expect = 7e-06
 Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 2/63 (3%)

Query: 55  LSGGQKKRLSIALELIDNPP--IMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112
           LSGG+ +R+ +A EL   PP  +  LDEP+TGL     NQ + ++K L   G T++   H
Sbjct: 88  LSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEH 147

Query: 113 QPS 115
              
Sbjct: 148 NLD 150

Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176

>gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 45.0 bits (106), Expect = 7e-06
 Identities = 28/79 (35%), Positives = 39/79 (49%)

Query: 34  LVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQC 93
            VD  L  IGL   +H     LSGGQ + +++A  L   P  +  DE T+ LD +S    
Sbjct: 116 RVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAV 175

Query: 94  VAMLKALARGGRTIVCTIH 112
           +  +K L   G+TIV   H
Sbjct: 176 LERIKKLHEKGKTIVYITH 194

Length = 274

>gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional

 Score = 44.8 bits (106), Expect = 7e-06
 Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 1/58 (1%)

Query: 55  LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112
           LSGGQ++RL IA  +   P ++ +DEP + LD  ST +   ++  L     TI+   H
Sbjct: 152 LSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTH 208

Length = 264

>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional

 Score = 45.5 bits (108), Expect = 8e-06
 Identities = 19/49 (38%), Positives = 33/49 (67%)

Query: 54  RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALAR 102
           +LSGG+++R+ IA+ L+  P ++  DEPTT LD +   Q + +L+ L +
Sbjct: 156 QLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQ 204

Length = 529

>gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 44.8 bits (106), Expect = 8e-06
 Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 1/58 (1%)

Query: 55  LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112
           LSGGQ++RL IA  +   P ++ +DEPT+ LD  +T++   +++ L +   TIV   H
Sbjct: 146 LSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEEL-KKNYTIVIVTH 202

Length = 249

>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional

 Score = 44.8 bits (106), Expect = 1e-05
 Identities = 25/103 (24%), Positives = 47/103 (45%), Gaps = 1/103 (0%)

Query: 38  ILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAML 97
           +L  +GL +        LS   K+ L IA  L+ +  ++ +DEPT+ L +   +    ++
Sbjct: 129 MLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIM 188

Query: 98  KALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLK 140
             L + G  IV   H+  A I  + D   +  + ++ C  M+ 
Sbjct: 189 NQLRKEGTAIVYISHK-LAEIRRICDRYTVMKDGSSVCSGMVS 230

Length = 510

>gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional

 Score = 44.5 bits (106), Expect = 1e-05
 Identities = 17/31 (54%), Positives = 24/31 (77%)

Query: 56  SGGQKKRLSIALELIDNPPIMFLDEPTTGLD 86
           SGG ++RL IA  L+ +P ++F+DEPT GLD
Sbjct: 153 SGGMQQRLQIARNLVTHPRLVFMDEPTGGLD 183

Length = 258

>gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D

 Score = 43.7 bits (104), Expect = 1e-05
 Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 4/72 (5%)

Query: 55  LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQP 114
           LSGG+++RL+ A  L+  P  +FLDE T+ LD  S ++   +LK L   G T++   H+P
Sbjct: 92  LSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL---GITVISVGHRP 148

Query: 115 S-ATIFEMVDHL 125
           S     + V  L
Sbjct: 149 SLWKFHDRVLDL 160

Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166

>gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional

 Score = 44.4 bits (105), Expect = 1e-05
 Identities = 24/79 (30%), Positives = 44/79 (55%), Gaps = 1/79 (1%)

Query: 35  VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
           V++ +  +GL    H L   LSGG+++R  IA+ +  +   + LDEPT+ LD       +
Sbjct: 128 VEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVL 187

Query: 95  AMLKALARG-GRTIVCTIH 112
           A++  L++  G T++  +H
Sbjct: 188 ALVHRLSQERGLTVIAVLH 206

Length = 265

>gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 44.5 bits (105), Expect = 1e-05
 Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 11/111 (9%)

Query: 9   IWCWQIISAQYSHRISVDDILDTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALE 68
           I+ WQI + +     ++D +     L D IL          T    LSGG+K+R+++   
Sbjct: 98  IFPWQIRNRRPDRAAALDLLAR-FALPDSILT------KNIT---ELSGGEKQRIALIRN 147

Query: 69  LIDNPPIMFLDEPTTGLDSNSTNQCVAML-KALARGGRTIVCTIHQPSATI 118
           L   P I+ LDE T+ LD ++      M+ + +      ++   H     I
Sbjct: 148 LQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAI 198

Length = 223

>gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 44.3 bits (105), Expect = 1e-05
 Identities = 20/57 (35%), Positives = 33/57 (57%)

Query: 56  SGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112
           SGG+++R++IA   I + PI+ LDEPT  LD+ +    V +++     G  +V   H
Sbjct: 154 SGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFH 210

Length = 235

>gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C

 Score = 44.2 bits (104), Expect = 1e-05
 Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 2/61 (3%)

Query: 55  LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV--AMLKALARGGRTIVCTIH 112
           LSGGQ++R+ +A  L  N  I+FLD+P + LD + ++  +   +LK L    RT+V   H
Sbjct: 141 LSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTH 200

Query: 113 Q 113
           +
Sbjct: 201 K 201

The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218

>gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 44.2 bits (104), Expect = 1e-05
 Identities = 33/114 (28%), Positives = 52/114 (45%), Gaps = 9/114 (7%)

Query: 25  VDDILDTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTG 84
           V+  L    L  ++ D     L+K  L   LSGGQ++RL IA  L   P ++ +DEP + 
Sbjct: 127 VESALKGAALWQEVKDK----LNKSAL--GLSGGQQQRLCIARALAIKPKVLLMDEPCSA 180

Query: 85  LDSNSTNQCVAMLKALARGGRTIVCTIH--QPSATIFEMVDHLGLDSNSTNQCV 136
           LD  +T +   ++ +L R   TI    H  Q +  + +       D +   Q V
Sbjct: 181 LDPIATMKVEELIHSL-RSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMV 233

Length = 259

>gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK

 Score = 44.4 bits (105), Expect = 1e-05
 Identities = 20/47 (42%), Positives = 31/47 (65%)

Query: 56  SGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALAR 102
           SGG ++RL IA  L+  P ++F+DEPT GLD +   + + +L+ L R
Sbjct: 150 SGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVR 196

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253

>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional

 Score = 44.7 bits (106), Expect = 1e-05
 Identities = 25/64 (39%), Positives = 40/64 (62%), Gaps = 5/64 (7%)

Query: 55  LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGG--RTIVCTIH 112
           LSGGQK+R+SIA  L+ N  I+ LD+  + +D  + +Q   +L  L + G  RT++ + H
Sbjct: 452 LSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQ---ILHNLRQWGEGRTVIISAH 508

Query: 113 QPSA 116
           + SA
Sbjct: 509 RLSA 512

Length = 569

>gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional

 Score = 44.0 bits (104), Expect = 1e-05
 Identities = 21/46 (45%), Positives = 28/46 (60%)

Query: 55  LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKAL 100
           LSGGQ++R+ IA  L  +P I+ LDEPT+ LD  S  +    L  L
Sbjct: 149 LSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGL 194

Length = 252

>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit

 Score = 44.5 bits (105), Expect = 1e-05
 Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 1/77 (1%)

Query: 37  DILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAM 96
           ++L  +GL   +H     LSGG ++R+ +A  L   P I+ +DE  + LD    +     
Sbjct: 112 ELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDE 171

Query: 97  LKALARG-GRTIVCTIH 112
           LK L     +TIV   H
Sbjct: 172 LKKLQATLQKTIVFITH 188

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363

>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family

 Score = 44.5 bits (106), Expect = 2e-05
 Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 5/59 (8%)

Query: 55  LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAML-KALARGGRTIVCTIH 112
           LSGG+++R+++   L+  P ++ LDEPT  LD+ S    VA L + L     T+V   H
Sbjct: 162 LSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAES----VAWLEQHLQEYPGTVVAVTH 216

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552

>gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 43.8 bits (103), Expect = 2e-05
 Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 3/66 (4%)

Query: 55  LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH-- 112
           LSGGQ++RL IA  L   P I+  DEPT+ LD  ST +   ++  L +   TIV   H  
Sbjct: 155 LSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNM 213

Query: 113 QPSATI 118
           Q +A I
Sbjct: 214 QQAARI 219

Length = 258

>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein

 Score = 44.4 bits (105), Expect = 2e-05
 Identities = 21/56 (37%), Positives = 35/56 (62%)

Query: 53  GRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIV 108
           GRLSGG +++  +A  L+ NP ++ LDEPT G+D  +  +   ++  LA+ G  I+
Sbjct: 402 GRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAII 457

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500

>gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 6/64 (9%)

Query: 55  LSGGQKKRLSIALEL------IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIV 108
           LSGG+++R+ +A  L      + +   +FLDEPT+ LD    +  + + + LAR G  ++
Sbjct: 136 LSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVL 195

Query: 109 CTIH 112
             +H
Sbjct: 196 AVLH 199

Length = 259

>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 20/62 (32%), Positives = 34/62 (54%)

Query: 47  SKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRT 106
              T  G LSGG ++++ I   L+  P I+ LDEPT G+D  +  +   ++  LA+  + 
Sbjct: 384 GHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKG 443

Query: 107 IV 108
           I+
Sbjct: 444 II 445

Length = 491

>gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional

 Score = 43.8 bits (103), Expect = 2e-05
 Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 1/59 (1%)

Query: 55  LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALAR-GGRTIVCTIH 112
           LSGGQ++R  IA+ L     IM LDEPTT LD +     + +L  L R  G T+   +H
Sbjct: 144 LSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLH 202

Length = 265

>gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 43.9 bits (103), Expect = 2e-05
 Identities = 22/56 (39%), Positives = 32/56 (57%)

Query: 55  LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCT 110
           LSGGQ++RL IA  L   P ++ +DEPT+ LD  ST +   ++  L      I+ T
Sbjct: 151 LSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVT 206

Length = 254

>gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 43.4 bits (103), Expect = 2e-05
 Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 7/62 (11%)

Query: 55  LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG----GRTIVCT 110
           LSGGQ++R  IA+ L  +   + LDEP   LD       V ++K L R     G+TIV  
Sbjct: 136 LSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLD---MKHSVQIMKILRRLADELGKTIVVV 192

Query: 111 IH 112
           +H
Sbjct: 193 LH 194

Length = 252

>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 22/58 (37%), Positives = 32/58 (55%)

Query: 54  RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTI 111
           RLSGGQK+R++IA  L   P I+ LDE T+ LD     + +  ++ L       V +I
Sbjct: 140 RLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSI 197

Length = 279

>gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 2/72 (2%)

Query: 55  LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVA-MLKALARGGRTIVCTIHQ 113
           LSGGQ++R+++A  L   P ++ LDEP   LD+    +    + K   R G T V   H 
Sbjct: 138 LSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHD 197

Query: 114 PSATIFEMVDHL 125
                 E+ D +
Sbjct: 198 Q-EEALELADRV 208

Length = 345

>gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional

 Score = 43.2 bits (102), Expect = 2e-05
 Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 1/79 (1%)

Query: 37  DILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAM 96
            +L+ +GL      L  +LSGG+++R+++A      P ++F DEPT  LD  + ++   +
Sbjct: 129 ALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADL 188

Query: 97  LKALARG-GRTIVCTIHQP 114
           L +L R  G T++   H  
Sbjct: 189 LFSLNREHGTTLILVTHDL 207

Length = 228

>gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 19/36 (52%), Positives = 25/36 (69%)

Query: 55  LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNST 90
           LSGGQ++RL IA  +   P ++ LDEPT+ LD  ST
Sbjct: 169 LSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPIST 204

Length = 272

>gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed

 Score = 43.8 bits (104), Expect = 2e-05
 Identities = 20/49 (40%), Positives = 31/49 (63%)

Query: 54  RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALAR 102
           +LSGGQ++R++IA  +++ P ++ LDE  + LD     Q    LKAL R
Sbjct: 144 QLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQR 192

Length = 375

>gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 42.9 bits (101), Expect = 3e-05
 Identities = 18/53 (33%), Positives = 28/53 (52%)

Query: 34  LVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLD 86
             +  L+  GL  + H     LSGGQ+ R+++   L+  P  + LDEP + LD
Sbjct: 114 AANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLD 166

Length = 213

>gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional

 Score = 43.1 bits (102), Expect = 3e-05
 Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 1/84 (1%)

Query: 37  DILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVA- 95
            +L  +GL  ++     +LSGGQ++R+ IA  L  NP ++ LDEP   LD+ +  Q    
Sbjct: 111 QMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTL 170

Query: 96  MLKALARGGRTIVCTIHQPSATIF 119
           +LK     G+ ++   H     +F
Sbjct: 171 LLKLWQETGKQVLLITHDIEEAVF 194

Length = 255

>gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor

 Score = 43.1 bits (102), Expect = 3e-05
 Identities = 30/110 (27%), Positives = 53/110 (48%), Gaps = 13/110 (11%)

Query: 14  IISAQYSHRI------SVDDIL---DTIGLVDDILDTIGL--VLSKHTLCGRLSGGQKKR 62
           I+  QY   I       V ++L   D  G +D+++D + L  VL ++    +LSGG+ +R
Sbjct: 90  IVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNI--DQLSGGELQR 147

Query: 63  LSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112
           ++IA  L  +    F DEP++ LD         +++ LA     ++   H
Sbjct: 148 VAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEH 197

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255

>gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 43.2 bits (102), Expect = 3e-05
 Identities = 22/52 (42%), Positives = 33/52 (63%)

Query: 35  VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLD 86
           V++ L+ +G+   K     RLSGGQK+R++IA  +   P I+ LDE T+ LD
Sbjct: 121 VNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLD 172

Length = 279

>gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 43.2 bits (102), Expect = 3e-05
 Identities = 20/47 (42%), Positives = 31/47 (65%)

Query: 56  SGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALAR 102
           SGG ++RL IA  L+  P ++F+DEPT GLD +   + + +L+ L R
Sbjct: 153 SGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVR 199

Length = 258

>gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional

 Score = 43.1 bits (102), Expect = 3e-05
 Identities = 18/36 (50%), Positives = 24/36 (66%)

Query: 55  LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNST 90
           LSGGQ++RL IA  +   P ++ LDEP + LD  ST
Sbjct: 157 LSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPIST 192

Length = 260

>gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 43.2 bits (101), Expect = 3e-05
 Identities = 20/56 (35%), Positives = 33/56 (58%)

Query: 55  LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCT 110
           LSGGQ++RL IA  +   P ++ +DEPT+ LD  +T +   ++  L +    I+ T
Sbjct: 226 LSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVT 281

Length = 329

>gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 42.9 bits (101), Expect = 3e-05
 Identities = 21/56 (37%), Positives = 34/56 (60%)

Query: 55  LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCT 110
           LSGGQ++RL IA  L  NP ++ +DEP + LD  +T +   +++ L +    I+ T
Sbjct: 150 LSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVT 205

Length = 253

>gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 42.9 bits (101), Expect = 4e-05
 Identities = 25/66 (37%), Positives = 40/66 (60%), Gaps = 3/66 (4%)

Query: 55  LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH-- 112
           LSGGQ++RL IA  L  +P ++ +DEP + LD  +T++   +++ LA    T+V   H  
Sbjct: 201 LSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTVVVVTHNM 259

Query: 113 QPSATI 118
           Q +A I
Sbjct: 260 QQAARI 265

Length = 305

>gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional

 Score = 42.8 bits (101), Expect = 4e-05
 Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 1/79 (1%)

Query: 35  VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
           VD+ L  +G+   +      LSGGQK+R++IA  L   P  +  DEPT  LD +   + V
Sbjct: 125 VDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVV 184

Query: 95  AMLKALARG-GRTIVCTIH 112
             +K L +  G TI+   H
Sbjct: 185 NTIKELNKKYGITIILITH 203

Length = 280

>gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 42.8 bits (101), Expect = 4e-05
 Identities = 22/69 (31%), Positives = 37/69 (53%)

Query: 34  LVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQC 93
           +   +L  +GL  ++H    +LSGG ++R+ IA  L   P ++ LDEP   LD+ +  Q 
Sbjct: 112 IAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQM 171

Query: 94  VAMLKALAR 102
             +L  L +
Sbjct: 172 QELLLDLWQ 180

Length = 259

>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

 Score = 42.9 bits (102), Expect = 5e-05
 Identities = 17/56 (30%), Positives = 28/56 (50%)

Query: 53  GRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIV 108
             LSGG +++L +A EL   P ++   +PT GLD  +       L  L   G+ ++
Sbjct: 402 RSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVL 457

Length = 501

>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional

 Score = 42.3 bits (100), Expect = 5e-05
 Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 10/67 (14%)

Query: 20  SHRISVDDILDTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLD 79
           + R  +  I   +G+ +D+L           L G+LSGGQ++R+++A  L+   PI+ LD
Sbjct: 105 AQREKLHAIARQMGI-EDLLAR---------LPGQLSGGQRQRVALARCLVREQPILLLD 154

Query: 80  EPTTGLD 86
           EP + LD
Sbjct: 155 EPFSALD 161

Length = 232

>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

 Score = 42.7 bits (101), Expect = 6e-05
 Identities = 30/106 (28%), Positives = 53/106 (50%), Gaps = 13/106 (12%)

Query: 18  QYSHRIS------VDDIL---DTIGLVDDILDTIGL--VLSKHTLCGRLSGGQKKRLSIA 66
           QY   I       V ++L   D  G  D++++ +GL  VL +      LSGG+ +R++IA
Sbjct: 168 QYVDLIPKVVKGKVGELLKKVDERGKFDEVVERLGLENVLDRDV--SELSGGELQRVAIA 225

Query: 67  LELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112
             L+ +  + F DEP++ LD         +++ LA  G+ ++   H
Sbjct: 226 AALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEH 271

Length = 591

>gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional

 Score = 42.4 bits (100), Expect = 6e-05
 Identities = 20/49 (40%), Positives = 29/49 (59%)

Query: 39  LDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDS 87
           L  +GL    +     LSGGQK+R+++A  LI  P ++ LDEP   LD+
Sbjct: 118 LAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDA 166

Length = 257

>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein

 Score = 42.1 bits (99), Expect = 6e-05
 Identities = 20/66 (30%), Positives = 37/66 (56%)

Query: 35  VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
           V+++L+ + L         +LSGGQ++R+++A  L   P ++ LDEP   LD+    +  
Sbjct: 111 VEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELR 170

Query: 95  AMLKAL 100
           + L+ L
Sbjct: 171 SWLRKL 176

[Transport and binding proteins, Anions]. Length = 237

>gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional

 Score = 42.4 bits (100), Expect = 6e-05
 Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 1/58 (1%)

Query: 55  LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112
           LSGGQ++RL IA  +  +P ++ +DEP + LD  +T +   ++  L R   TIV   H
Sbjct: 164 LSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDEL-RQNYTIVIVTH 220

Length = 267

>gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 42.3 bits (100), Expect = 6e-05
 Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)

Query: 55  LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALAR-GGRTIVCTIH 112
           LSGGQK+R++IA  L  NP I+  DE T+ LD     +   ++  L +   +T++   H
Sbjct: 143 LSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITH 201

Length = 271

>gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit

 Score = 42.7 bits (101), Expect = 6e-05
 Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 3/61 (4%)

Query: 55  LSGGQKKRLSIALEL---IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTI 111
           LSGG+ +R+ +A EL        +  LDEPTTGL  +   + + +L+ L   G T+V   
Sbjct: 830 LSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDKGNTVVVIE 889

Query: 112 H 112
           H
Sbjct: 890 H 890

This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 925

>gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 42.3 bits (99), Expect = 7e-05
 Identities = 18/38 (47%), Positives = 25/38 (65%)

Query: 55  LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQ 92
           LSGGQ++RL IA  +   P ++ +DEP + LD  ST Q
Sbjct: 162 LSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQ 199

Length = 274

>gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

 Score = 41.9 bits (99), Expect = 7e-05
 Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 3/63 (4%)

Query: 39  LDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNST---NQCVA 95
           L+ +GL+   +   G L+ GQ++RL IA  ++  P I+ LDEP  GL+   T   ++ +A
Sbjct: 138 LERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIA 197

Query: 96  MLK 98
            L+
Sbjct: 198 ELR 200

Length = 255

>gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 41.9 bits (98), Expect = 7e-05
 Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 6/93 (6%)

Query: 25  VDDILDTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTG 84
           V++ L    L D++ D     L K  L   LSGGQ++RL IA  +  +P ++ +DEP + 
Sbjct: 123 VEESLKAAALWDEVKDK----LDKSAL--GLSGGQQQRLCIARTIAVSPEVILMDEPCSA 176

Query: 85  LDSNSTNQCVAMLKALARGGRTIVCTIHQPSAT 117
           LD  ST +   ++  L      ++ T +   AT
Sbjct: 177 LDPISTTKIEDLIHKLKEDYTIVIVTHNMQQAT 209

Length = 250

>gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional

 Score = 41.8 bits (98), Expect = 9e-05
 Identities = 19/36 (52%), Positives = 25/36 (69%)

Query: 55  LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNST 90
           LSGGQ++RL IA  L   P ++ +DEPT+ LD  ST
Sbjct: 168 LSGGQQQRLCIARCLAIEPDVILMDEPTSALDPIST 203

Length = 271

>gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE

 Score = 41.7 bits (98), Expect = 9e-05
 Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 10/86 (11%)

Query: 28  ILDTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDS 87
           +LD +GL  +  D          L  +LSGGQ +R++IA  L   P ++ LDE  + LD 
Sbjct: 133 LLDMVGLRSEDADK---------LPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDM 183

Query: 88  NSTNQCVAMLKAL-ARGGRTIVCTIH 112
                 + +L+ L    G   +   H
Sbjct: 184 VLQAVILELLRKLQQAFGTAYLFITH 209

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265

>gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD

 Score = 41.6 bits (98), Expect = 9e-05
 Identities = 24/53 (45%), Positives = 32/53 (60%), Gaps = 7/53 (13%)

Query: 39  LDTIGL-----VLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLD 86
           L+ +GL     VL K+    +LSGG  +R+ IAL L+  PP +  DEPTT LD
Sbjct: 107 LEAVGLPDPEEVLKKYPF--QLSGGMLQRVMIALALLLEPPFLIADEPTTDLD 157

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230

>gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional

 Score = 42.0 bits (99), Expect = 9e-05
 Identities = 20/47 (42%), Positives = 28/47 (59%)

Query: 56  SGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALAR 102
           SGGQ +R+ IA  LI  P ++  DEP + LD +   Q V +L+ L R
Sbjct: 163 SGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQR 209

Length = 331

>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2

 Score = 41.7 bits (98), Expect = 1e-04
 Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 20/112 (17%)

Query: 19  YSHRISVDDILDTIGLVDDILDTIGLVLSKHTL-----------------CGRLSGGQKK 61
           Y HR  +D++ + IGL  ++ D +  + +  TL                    LS G++ 
Sbjct: 377 YPHRTVLDNLTEAIGL--ELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERH 434

Query: 62  RLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV-AMLKALARGGRTIVCTIH 112
           R+++A  LI  P I+ LDEPT  +D  +      ++LKA     +T +   H
Sbjct: 435 RVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSH 486

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520

>gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 4/79 (5%)

Query: 35  VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
           V ++L  I  +L +     +LSGGQ++R+++   ++  P +  +DEP + LD+    Q  
Sbjct: 114 VAELLQ-IEHLLDRKP--KQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMR 170

Query: 95  AMLKAL-ARGGRTIVCTIH 112
           A LK L  R G T +   H
Sbjct: 171 AELKRLQQRLGTTTIYVTH 189

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213

>gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional

 Score = 41.4 bits (97), Expect = 1e-04
 Identities = 22/64 (34%), Positives = 34/64 (53%)

Query: 55  LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQP 114
           LSGG+++R+ IA  L  NP  + LDEP  G+D  S      +++ L   G  ++ T H  
Sbjct: 138 LSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNV 197

Query: 115 SATI 118
             T+
Sbjct: 198 RETL 201

Length = 241

>gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 41.6 bits (97), Expect = 1e-04
 Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 6/88 (6%)

Query: 15  ISAQYSHRISVDDILDTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP 74
            +AQ      V+  L    L D++ D +      H     LSGGQ++RL IA  L   P 
Sbjct: 114 TTAQSRLDEVVEKSLRQAALWDEVKDNL------HKSGLALSGGQQQRLCIARVLAIEPE 167

Query: 75  IMFLDEPTTGLDSNSTNQCVAMLKALAR 102
           ++ +DEP + LD  ST +   +++ L +
Sbjct: 168 VILMDEPCSALDPVSTMRIEELMQELKQ 195

Length = 251

>gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component

 Score = 41.0 bits (97), Expect = 1e-04
 Identities = 19/58 (32%), Positives = 31/58 (53%)

Query: 55  LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112
            SGG+KKR  I   L+  P +  LDEP +GLD ++      ++  L   G++++   H
Sbjct: 105 FSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITH 162

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200

>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional

 Score = 41.8 bits (98), Expect = 1e-04
 Identities = 19/47 (40%), Positives = 29/47 (61%)

Query: 54  RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKAL 100
           +LSGG ++R+ IA+ L   P ++  DEPTT LD     Q + ++K L
Sbjct: 168 QLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVL 214

Length = 623

>gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional

 Score = 41.7 bits (98), Expect = 1e-04
 Identities = 17/35 (48%), Positives = 22/35 (62%)

Query: 52  CGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLD 86
             R SGG+K RL +AL +   P ++ LDEPT  LD
Sbjct: 428 TRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLD 462

Length = 638

>gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 7/76 (9%)

Query: 27  DILDTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLD 86
             L+ +GL +        VL  +     +SGG  +R+ IAL L+   P +  DEPTT LD
Sbjct: 120 AALEAVGLENA-----ARVLKLYPF--EMSGGMLQRMMIALALLCEAPFIIADEPTTDLD 172

Query: 87  SNSTNQCVAMLKALAR 102
             +  + + +L+++ +
Sbjct: 173 VVAQARILDLLESIVQ 188

Length = 254

>gnl|CDD|222219 pfam13558, SbcCD_C, Putative exonuclease SbcCD, C subunit

 Score = 38.7 bits (91), Expect = 1e-04
 Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 12/59 (20%)

Query: 53 GRLSGGQKK-------RLSIALELIDNPP-----IMFLDEPTTGLDSNSTNQCVAMLKA 99
          G LSGG+K+         ++A +   N       ++FLDE    LD  +    + +L+ 
Sbjct: 21 GTLSGGEKQVLAYLALAAALAAQYGSNRGGPAPRLIFLDEAFAKLDEENIRSLLELLRE 79

Possible exonuclease SbcCD, C subunit, on AAA proteins. Length = 79

>gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 1/59 (1%)

Query: 55  LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIH 112
           LSGGQ++R+ +A  L  +PP++ +DEP   LD  + +Q     K L +  G+TIV   H
Sbjct: 136 LSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTH 194

OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242

>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 18/32 (56%), Positives = 24/32 (75%)

Query: 55  LSGGQKKRLSIALELIDNPPIMFLDEPTTGLD 86
           LSGGQK+R++IA  L  NP ++ LDE T+ LD
Sbjct: 143 LSGGQKQRVAIAGVLALNPSVIILDEATSMLD 174

Length = 269

>gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C

 Score = 40.5 bits (96), Expect = 2e-04
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 7/63 (11%)

Query: 55  LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTN----QCVAMLKALARGGRTIVCT 110
           LSGGQK+R+S+A  +  +  I  LD+P + +D++        C+  L  L      I+ T
Sbjct: 128 LSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCI--LGLLLNNKTRILVT 185

Query: 111 IHQ 113
            HQ
Sbjct: 186 -HQ 187

This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204

>gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 9/76 (11%)

Query: 25  VDDILDTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTG 84
             ++L  + L D +LD             +LSGGQ +R+ +A  L   P ++ LDE  + 
Sbjct: 131 ASEMLRAVDLDDSVLDK---------RPPQLSGGQLQRVCLARALAVEPKLLILDEAVSN 181

Query: 85  LDSNSTNQCVAMLKAL 100
           LD       + +LK L
Sbjct: 182 LDLVLQAGVIRLLKKL 197

Length = 268

>gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 3/56 (5%)

Query: 36  DDILDTIGLVLSKHTL---CGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSN 88
           +DIL  +  V + H +     +LSGG+ +R+ +A  L++ P ++ LDEPT G+D N
Sbjct: 99  EDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVN 154

Length = 251

>gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 40.8 bits (95), Expect = 2e-04
 Identities = 20/56 (35%), Positives = 32/56 (57%)

Query: 55  LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCT 110
           LSGGQ++RL IA  +   P ++ +DEP + LD  ST +   +++ L      I+ T
Sbjct: 149 LSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVT 204

Length = 252

>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 8/68 (11%)

Query: 25  VDDILDTIGL------VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFL 78
           + + LD   L      ++++L  +GL          LSGG  ++ ++   L+ NP ++ L
Sbjct: 123 LQEQLDHHNLWQLENRINEVLAQLGL--DPDAALSSLSGGWLRKAALGRALVSNPDVLLL 180

Query: 79  DEPTTGLD 86
           DEPT  LD
Sbjct: 181 DEPTNHLD 188

Length = 635

>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional

 Score = 40.7 bits (96), Expect = 2e-04
 Identities = 20/56 (35%), Positives = 33/56 (58%)

Query: 53  GRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIV 108
            RLSGG +++  +A  L+ NP I+ LDEPT G+D  +  +   ++  L + G  I+
Sbjct: 404 ARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAII 459

Length = 506

>gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 40.4 bits (94), Expect = 2e-04
 Identities = 17/38 (44%), Positives = 26/38 (68%)

Query: 55  LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQ 92
            SGGQ++R+ IA  L   P ++ LDEPT+ LD  S+++
Sbjct: 148 FSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSE 185

Length = 251

>gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

 Score = 40.2 bits (94), Expect = 2e-04
 Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 7/93 (7%)

Query: 33  GLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELID-----NPP--IMFLDEPTTGL 85
            L++D+   + L         +LSGG+ +R+ +A  ++      NP   ++ LDEP   L
Sbjct: 104 ELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSL 163

Query: 86  DSNSTNQCVAMLKALARGGRTIVCTIHQPSATI 118
           D    +    +L AL + G  IV + H  + T+
Sbjct: 164 DVAQQSALDRLLSALCQQGLAIVMSSHDLNHTL 196

Length = 248

>gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 16/34 (47%), Positives = 25/34 (73%)

Query: 53  GRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLD 86
           G LSGG +++++IA  L+  P ++ LDEPT G+D
Sbjct: 394 GLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVD 427

Length = 501

>gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 40.4 bits (94), Expect = 2e-04
 Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 1/58 (1%)

Query: 55  LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112
           LSGGQ++RL IA  +   P ++ LDEP + LD  +T +   ++  L +   TI    H
Sbjct: 150 LSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKK-DYTIALVTH 206

Length = 261

>gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional

 Score = 40.1 bits (94), Expect = 3e-04
 Identities = 17/36 (47%), Positives = 24/36 (66%)

Query: 55  LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNST 90
           LSGGQ++RL IA  L   P ++ +DEP + LD  +T
Sbjct: 150 LSGGQQQRLCIARALAVEPEVLLMDEPASALDPIAT 185

Length = 253

>gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional

 Score = 40.5 bits (95), Expect = 3e-04
 Identities = 18/38 (47%), Positives = 25/38 (65%)

Query: 53  GRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNST 90
           G LSGGQ++RL IA  +   P ++ +DEP + LD  ST
Sbjct: 147 GGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPIST 184

Length = 258

>gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 40.2 bits (94), Expect = 3e-04
 Identities = 17/36 (47%), Positives = 24/36 (66%)

Query: 55  LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNST 90
           LSGGQ++RL IA  +   P ++ +DEP + LD  ST
Sbjct: 155 LSGGQQQRLCIARTIAIEPEVILMDEPCSALDPIST 190

Length = 269

>gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional

 Score = 40.3 bits (95), Expect = 3e-04
 Identities = 14/31 (45%), Positives = 23/31 (74%)

Query: 56  SGGQKKRLSIALELIDNPPIMFLDEPTTGLD 86
           SGGQ++R++IA  L+ +P ++  DEP + LD
Sbjct: 156 SGGQRQRIAIARALMLDPDVVVADEPVSALD 186

Length = 327

>gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional

 Score = 40.5 bits (95), Expect = 3e-04
 Identities = 19/47 (40%), Positives = 28/47 (59%)

Query: 56  SGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALAR 102
           SGG ++R+ IA+ L+  P ++  DEPTT LD     Q + +L  L R
Sbjct: 163 SGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKR 209

Length = 330

>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter

 Score = 40.9 bits (96), Expect = 3e-04
 Identities = 14/34 (41%), Positives = 24/34 (70%)

Query: 53  GRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLD 86
             +SGGQK+R+++A  L+ +  ++ LDE T+ LD
Sbjct: 610 SSISGGQKQRIALARALLTDSKVLILDESTSNLD 643

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708

>gnl|CDD|213208 cd03241, ABC_RecN, ATP-binding cassette domain of RecN

 Score = 40.3 bits (95), Expect = 3e-04
 Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 7/65 (10%)

Query: 55  LSGGQKKRLSIALELI----DNPPIMFLDEPTTGLDSNSTNQCVA-MLKALARGGRTIVC 109
            SGG+  RL +AL+ I    D  P +  DE  TG+ S    Q V   LK L+R    ++C
Sbjct: 171 ASGGELSRLMLALKAILARKDAVPTLIFDEIDTGI-SGEVAQAVGKKLKELSR-SHQVLC 228

Query: 110 TIHQP 114
             H P
Sbjct: 229 ITHLP 233

RecN ATPase involved in DNA repair; similar to ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 276

>gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 2/75 (2%)

Query: 55  LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQP 114
           LSGG+++RL+ A  L+  P  +FLDE T+ LD  + ++   +LK       T++   H+P
Sbjct: 516 LSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDA-TVISVGHRP 574

Query: 115 SA-TIFEMVDHLGLD 128
           +          L  D
Sbjct: 575 TLWNFHSRQLELLDD 589

Length = 604

>gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional

 Score = 40.4 bits (94), Expect = 3e-04
 Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 1/77 (1%)

Query: 37  DILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDS-NSTNQCVA 95
           D L  +GL    H+    LSGG ++R+ +A  L  NP I+ +DE  + LD    T     
Sbjct: 147 DALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDE 206

Query: 96  MLKALARGGRTIVCTIH 112
           ++K  A+  RTIV   H
Sbjct: 207 LVKLQAKHQRTIVFISH 223

Length = 400

>gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 40.1 bits (93), Expect = 3e-04
 Identities = 22/68 (32%), Positives = 38/68 (55%)

Query: 30  DTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNS 89
           + I  VD+ L  + ++  K     RLSGGQK+R+++A  +   P I+ LDE T+ LD   
Sbjct: 116 EMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTG 175

Query: 90  TNQCVAML 97
             + + ++
Sbjct: 176 RQEIMRVI 183

Length = 277

>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional

 Score = 40.1 bits (94), Expect = 3e-04
 Identities = 17/34 (50%), Positives = 24/34 (70%)

Query: 54  RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDS 87
           +LSGGQK+R+++A  L   P I+ LDEP   LD+
Sbjct: 136 QLSGGQKQRVALARALAVEPQILLLDEPFGALDA 169

Length = 353

>gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 40.0 bits (94), Expect = 4e-04
 Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 6/54 (11%)

Query: 36  DDILDTIGLVLSKHTL---CGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLD 86
           D ++  +G+   +H L    G LSGG+K+R++I   L+  P ++ +DEP   LD
Sbjct: 110 DQLVALLGI---EHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLD 160

Length = 352

>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional

 Score = 39.9 bits (94), Expect = 5e-04
 Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 1/87 (1%)

Query: 37  DILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAM 96
           + L+ +G+ +   T    LS GQ++ + IA  L  N  ++  DEPT+ L +    Q   +
Sbjct: 123 EQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRV 182

Query: 97  LKALARGGRTIVCTIHQPSATIFEMVD 123
           ++ L   GR I+   H+    IF + D
Sbjct: 183 IRELRAEGRVILYVSHR-MEEIFALCD 208

Length = 501

>gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional

 Score = 39.7 bits (93), Expect = 5e-04
 Identities = 18/49 (36%), Positives = 28/49 (57%)

Query: 54  RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALAR 102
           +LSGG  +R+ IA+ +   P ++  DEPTT LD     Q + +L  L +
Sbjct: 153 QLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQ 201

Length = 326

>gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 39.2 bits (91), Expect = 6e-04
 Identities = 32/112 (28%), Positives = 45/112 (40%), Gaps = 15/112 (13%)

Query: 87  SNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGG 146
           S    QCVA+   L            +P   IF+ V  + LD +S    +  +K L   G
Sbjct: 138 SGGQGQCVALAGILTM----------EPECLIFDEVTSM-LDPDSGIAVLERIKKLHEKG 186

Query: 147 RTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI--PYLQTIGLHCP 196
           +TIV   H          D + V+  G  V +G   N +    LQT+GL  P
Sbjct: 187 KTIVYITHNLEE--LHDADRIIVMDRGKIVLEGEPENVLSDVSLQTLGLTPP 236

Length = 274

>gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 39.2 bits (92), Expect = 6e-04
 Identities = 28/91 (30%), Positives = 37/91 (40%), Gaps = 21/91 (23%)

Query: 39  LDTIGLVLSKH--TLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDS-------NS 89
           L  +GL L        G LSGGQ++ LS+ +  +  P I+ LDE T  LD          
Sbjct: 131 LARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMEL 190

Query: 90  TNQCVA------------MLKALARGGRTIV 108
           T + V             M  AL  G R I+
Sbjct: 191 TAKIVEEHKLTTLMVTHNMEDALDYGNRLIM 221

Length = 263

>gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional

 Score = 39.6 bits (93), Expect = 6e-04
 Identities = 19/54 (35%), Positives = 30/54 (55%)

Query: 55  LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIV 108
           LS G+ ++  +   L+  P ++ LDEP  GLD  S  Q   +L +L + G T+V
Sbjct: 136 LSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLV 189

Length = 490

>gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed

 Score = 39.3 bits (93), Expect = 7e-04
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 5/59 (8%)

Query: 55  LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAML-KALARGGRTIVCTIH 112
           LSGG+++R+++   L++ P ++ LDEPT  LD+ S    VA L + L     T+V   H
Sbjct: 164 LSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAES----VAWLEQFLHDYPGTVVAVTH 218

Length = 556

>gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional

 Score = 39.8 bits (93), Expect = 7e-04
 Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 4/61 (6%)

Query: 55  LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV--AMLKALARGGRTIVCTIH 112
           LSGGQK R+S+A  +  N  +  LD+P + LD++   + V    L ALA  G+T V   H
Sbjct: 783 LSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALA--GKTRVLATH 840

Query: 113 Q 113
           Q
Sbjct: 841 Q 841

Length = 1560

>gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor

 Score = 38.3 bits (89), Expect = 8e-04
 Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 12/75 (16%)

Query: 55  LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALAR----GGRTIVCT 110
           LSGG+ +R++IA  L+ N      DEP+  LD     Q +   +A+ R    G +T +  
Sbjct: 72  LSGGELQRVAIAAALLRNATFYLFDEPSAYLDI---EQRLNAARAIRRLSEEGKKTALVV 128

Query: 111 IHQPSATIFEMVDHL 125
            H        ++D+L
Sbjct: 129 EHD-----LAVLDYL 138

The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177

>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

 Score = 38.3 bits (90), Expect = 0.001
 Identities = 20/74 (27%), Positives = 37/74 (50%)

Query: 35  VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
           + ++ +  GL +        LS G+++R+ I   L     ++ LDEPT  L     ++  
Sbjct: 121 IKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELF 180

Query: 95  AMLKALARGGRTIV 108
            +L+ LA  G+TI+
Sbjct: 181 EILRRLAAEGKTII 194

Length = 501

>gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

 Score = 38.7 bits (90), Expect = 0.001
 Identities = 19/60 (31%), Positives = 31/60 (51%)

Query: 48  KHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTI 107
           +    G +SGG+++ L+I   L+  P ++ LDEP+ GL      Q    ++ L   G TI
Sbjct: 131 RIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTI 190

Length = 237

>gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the excision repair protein UvrA

 Score = 38.4 bits (90), Expect = 0.001
 Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 3/62 (4%)

Query: 55  LSGGQKKRLSIALELI---DNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTI 111
           LSGG+ +R+ +A EL        +  LDEPTTGL  +   + + +L+ L   G T+V   
Sbjct: 170 LSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIE 229

Query: 112 HQ 113
           H 
Sbjct: 230 HN 231

Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 261

>gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional

 Score = 38.5 bits (90), Expect = 0.001
 Identities = 15/35 (42%), Positives = 26/35 (74%)

Query: 54  RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSN 88
           ++SGGQ++R+++A  LI  P ++  DEP + LD+N
Sbjct: 136 QISGGQQQRVALARALILKPKVLLFDEPLSNLDAN 170

Length = 351

>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional

 Score = 38.7 bits (90), Expect = 0.001
 Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 1/60 (1%)

Query: 54  RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQC-VAMLKALARGGRTIVCTIH 112
           +LSGGQ++R+++A  L   P ++ LDEP   LD    ++  + ++  L R G T V   H
Sbjct: 149 QLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTH 208

Length = 377

>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional

 Score = 38.6 bits (91), Expect = 0.001
 Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 13/80 (16%)

Query: 18  QYSHRI------SVDDIL---DTIGLVDDILDTIGL--VLSKHTLCGRLSGGQKKRLSIA 66
           QY   I       V ++L   D  G +D++++ +GL  +L +      LSGG+ +R++IA
Sbjct: 167 QYVDLIPKVFKGKVRELLKKVDERGKLDEVVERLGLENILDRDI--SELSGGELQRVAIA 224

Query: 67  LELIDNPPIMFLDEPTTGLD 86
             L+ +    F DEPT+ LD
Sbjct: 225 AALLRDADFYFFDEPTSYLD 244

Length = 590

>gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

 Score = 37.9 bits (89), Expect = 0.001
 Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 2/61 (3%)

Query: 55  LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAM-LKALARGGRTIVCTIHQ 113
            SGG+KKR  I   L+  P +  LDEP +GLD ++    VA  + AL   GR ++   H 
Sbjct: 145 FSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKI-VAEGINALREEGRGVLIITHY 203

Query: 114 P 114
            
Sbjct: 204 Q 204

Length = 251

>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family

 Score = 38.0 bits (89), Expect = 0.002
 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 7/50 (14%)

Query: 51  LCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKAL 100
             G+LSGG++ R+ +A  L     ++ LDEPT  LD       V  L+AL
Sbjct: 440 KVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLD-------VETLRAL 482

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552

>gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional

 Score = 38.1 bits (89), Expect = 0.002
 Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 1/88 (1%)

Query: 36  DDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVA 95
           D +L  + L  S   L G LS G+++ + IA  L     ++ +DEPT  L    T     
Sbjct: 123 DKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFR 182

Query: 96  MLKALARGGRTIVCTIHQPSATIFEMVD 123
           +++ L   GR IV   H+    IFE+ D
Sbjct: 183 VIRELKSQGRGIVYISHR-LKEIFEICD 209

Length = 501

>gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional

 Score = 38.3 bits (89), Expect = 0.002
 Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 4/71 (5%)

Query: 55  LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQP 114
           LSGGQK R++ A      P I+ LDEP+  LD ++    +  L  L +GG   V  +   
Sbjct: 628 LSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGL-VLFQGG---VLMVSHD 683

Query: 115 SATIFEMVDHL 125
              I   VD L
Sbjct: 684 EHLISGSVDEL 694

Length = 718

>gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein

 Score = 37.9 bits (89), Expect = 0.002
 Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 2/87 (2%)

Query: 27  DILDTIGLVDDILDTIGLVLSKHTLCGR-LSGGQKKRLSIALELIDNPPIMFLDEPTTGL 85
             L+ +GL + +    G + +     G  LS GQ++ L +A  L+    I+ LDE T  +
Sbjct: 111 QALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASV 170

Query: 86  DSNSTNQCVAMLKALARGGRTIVCTIH 112
           D  +       ++  A    T++   H
Sbjct: 171 DPETDALIQKTIRE-AFKDCTVLTIAH 196

The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221

>gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 38.1 bits (88), Expect = 0.002
 Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 1/59 (1%)

Query: 55  LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIH 112
           LSGGQK+R+++A  +  +   + LDEPT GLD       + + + L +   + I+   H
Sbjct: 151 LSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTH 209

Length = 289

>gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional

 Score = 38.1 bits (89), Expect = 0.002
 Identities = 15/33 (45%), Positives = 23/33 (69%)

Query: 55  LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDS 87
           LSGGQ++R++I   L+  P +  LDEP + LD+
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDA 166

Length = 369

>gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 38.1 bits (89), Expect = 0.002
 Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 1/91 (1%)

Query: 35  VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
           +   L+ + +V  K      LS G ++++     +I  P ++ LDEP +GLD  +     
Sbjct: 111 LQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLK 170

Query: 95  AMLKALARGGRTIVCTIHQPSATIFEMVDHL 125
             +  L   G TI+ + H+    + E+ D L
Sbjct: 171 DAIFELKEEGATIIFSSHRME-HVEELCDRL 200

Length = 300

>gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC

 Score = 37.6 bits (88), Expect = 0.002
 Identities = 17/59 (28%), Positives = 26/59 (44%)

Query: 56  SGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQP 114
           SGG+KKR  I    +  P +  LDE  +GLD ++       +  L    R+ +   H  
Sbjct: 146 SGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQ 204

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243

>gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional

 Score = 37.1 bits (87), Expect = 0.003
 Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 7/65 (10%)

Query: 55  LSGGQKKRLSIALELI------DNPPIMFLDEPTTGLDSNSTNQCVAMLKALAR-GGRTI 107
           LSGG+++R+ +A  L         P  + LDEPT+ LD    +  + + + LA   G  +
Sbjct: 135 LSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAV 194

Query: 108 VCTIH 112
           +  +H
Sbjct: 195 IVVLH 199

Length = 258

>gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication, recombination, and repair]

 Score = 37.6 bits (88), Expect = 0.003
 Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 3/57 (5%)

Query: 55  LSGGQKKRLSIALELID---NPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIV 108
           LSGG+ +R+ +A EL        +  LDEPTTGL  +   + + +L  L   G T++
Sbjct: 823 LSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVI 879

Length = 935

>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional

 Score = 36.8 bits (86), Expect = 0.004
 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 6/65 (9%)

Query: 47  SKHTLCGRLSGG--QKKRLSIAL-ELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG 103
           S+  L   LSGG  QK  L   L E +    ++ LDEPT G+D  + ++   ++  LA  
Sbjct: 389 SREQLIMNLSGGNQQKAILGRWLSEDMK---VILLDEPTRGIDVGAKHEIYNVIYELAAQ 445

Query: 104 GRTIV 108
           G  ++
Sbjct: 446 GVAVL 450

Length = 501

>gnl|CDD|223571 COG0497, RecN, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 37.2 bits (87), Expect = 0.004
 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 7/65 (10%)

Query: 55  LSGGQKKRLSIALELI----DNPPIMFLDEPTTGLDSNSTNQCVA-MLKALARGGRTIVC 109
            SGG+  R+ +AL++I    D+ P +  DE  TG+ S    Q V   L+ L+   + +  
Sbjct: 432 ASGGELSRIMLALKVILSRKDDTPTLIFDEVDTGI-SGRVAQAVGKKLRRLSEHHQVLCV 490

Query: 110 TIHQP 114
           T H P
Sbjct: 491 T-HLP 494

Length = 557

>gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC

 Score = 37.3 bits (86), Expect = 0.004
 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 10/70 (14%)

Query: 55   LSGGQKKR--LSIALELID--------NPPIMFLDEPTTGLDSNSTNQCVAMLKALARGG 104
            LSGG+     LS+AL L D            +F+DE    LD +S ++ + +L A+  G 
Sbjct: 951  LSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGS 1010

Query: 105  RTIVCTIHQP 114
            + I    H P
Sbjct: 1011 KMIGIISHVP 1020

All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 1042

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	203
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	100.0
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	99.97
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	99.97
KOG0061|consensus	613		99.97
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	99.97
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	99.97
PLN03211	659	ABC transporter G-25; Provisional	99.97
COG1127	263	Ttg2A ABC-type transport system involved in resist	99.97
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	99.96
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	99.96
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	99.96
PRK13537	306	nodulation ABC transporter NodI; Provisional	99.96
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	99.96
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	99.96
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	99.96
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	99.96
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	99.96
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	99.96
PRK13536	340	nodulation factor exporter subunit NodI; Provision	99.96
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	99.96
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	99.96
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	99.96
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	99.96
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	99.95
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	99.95
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	99.95
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	99.95
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	99.95
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.95
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	99.95
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	99.95
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.95
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	99.95
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.95
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	99.95
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	99.95
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.95
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	99.95
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	99.95
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	99.95
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	99.95
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	99.95
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	99.95
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	99.95
COG0411	250	LivG ABC-type branched-chain amino acid transport	99.95
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	99.95
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	99.95
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.95
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	99.95
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	99.95
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	99.95
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	99.95
PLN03140	1470	ABC transporter G family member; Provisional	99.95
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	99.95
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	99.95
COG3638	258	ABC-type phosphate/phosphonate transport system, A	99.95
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	99.95
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	99.95
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	99.95
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	99.95
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.95
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	99.95
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	99.95
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	99.95
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	99.95
TIGR01187	325	potA spermidine/putrescine ABC transporter ATP-bin	99.95
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	99.95
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	99.95
COG1123	539	ATPase components of various ABC-type transport sy	99.95
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.95
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	99.95
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	99.95
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	99.95
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	99.95
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	99.95
COG1123	539	ATPase components of various ABC-type transport sy	99.95
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	99.95
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	99.95
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	99.95
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	99.95
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.95
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	99.94
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	99.94
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	99.94
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	99.94
COG4598	256	HisP ABC-type histidine transport system, ATPase c	99.94
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	99.94
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	99.94
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	99.94
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	99.94
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	99.94
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	99.94
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	99.94
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	99.94
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	99.94
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	99.94
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	99.94
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	99.94
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	99.94
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	99.94
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	99.94
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	99.94
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.94
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	99.94
PLN03140	1470	ABC transporter G family member; Provisional	99.94
cd03269	210	ABC_putative_ATPase This subfamily is involved in	99.94
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	99.94
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	99.94
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	99.94
COG4172	534	ABC-type uncharacterized transport system, duplica	99.94
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.94
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	99.94
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	99.94
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	99.94
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	99.94
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	99.94
PRK09984	262	phosphonate/organophosphate ester transporter subu	99.94
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	99.94
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	99.94
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	99.94
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	99.94
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	99.94
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	99.94
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	99.94
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	99.94
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	99.94
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	99.94
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.94
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	99.94
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.94
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.94
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	99.94
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	99.94
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	99.94
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	99.94
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	99.94
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.94
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.94
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	99.94
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.94
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	99.94
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.94
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	99.94
cd03299	235	ABC_ModC_like Archeal protein closely related to M	99.94
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	99.94
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	99.94
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.94
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	99.94
PRK10938	490	putative molybdenum transport ATP-binding protein	99.94
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	99.93
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.93
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.93
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	99.93
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	99.93
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.93
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	99.93
PRK10908	222	cell division protein FtsE; Provisional	99.93
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	99.93
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.93
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.93
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.93
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	99.93
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.93
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	99.93
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	99.93
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.93
COG2884	223	FtsE Predicted ATPase involved in cell division [C	99.93
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	99.93
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	99.93
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	99.93
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	99.93
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	99.93
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.93
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.93
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	99.93
PRK03695	248	vitamin B12-transporter ATPase; Provisional	99.93
cd03234	226	ABCG_White The White subfamily represents ABC tran	99.93
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	99.93
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	99.93
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	99.93
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	99.93
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.93
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	99.93
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	99.93
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	99.93
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	99.93
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	99.92
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	99.92
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	99.92
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.92
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	99.92
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	99.92
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	99.92
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	99.92
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.92
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	99.92
COG4161	242	ArtP ABC-type arginine transport system, ATPase co	99.92
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	99.92
COG0410	237	LivF ABC-type branched-chain amino acid transport	99.92
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	99.92
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	99.92
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	99.92
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	99.92
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	99.92
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	99.92
COG4152	300	ABC-type uncharacterized transport system, ATPase	99.92
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	99.92
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.92
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	99.92
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	99.92
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	99.92
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	99.92
COG4148	352	ModC ABC-type molybdate transport system, ATPase c	99.92
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	99.92
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	99.91
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	99.91
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	99.91
PRK13546	264	teichoic acids export protein ATP-binding subunit;	99.91
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	99.91
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.91
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	99.91
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	99.91
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	99.91
COG4181	228	Predicted ABC-type transport system involved in ly	99.91
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	99.91
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	99.91
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	99.91
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	99.91
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	99.91
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	99.91
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	99.91
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	99.91
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	99.91
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	99.91
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	99.91
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	99.91
COG4172	534	ABC-type uncharacterized transport system, duplica	99.91
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	99.91
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	99.91
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.91
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.9
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	99.9
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	99.9
cd03270	226	ABC_UvrA_I The excision repair protein UvrA domain	99.9
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	99.9
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	99.9
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	99.9
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	99.9
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	99.9
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	99.9
COG4559	259	ABC-type hemin transport system, ATPase component	99.9
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	99.9
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	99.9
cd03271	261	ABC_UvrA_II The excision repair protein UvrA domai	99.9
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	99.9
PRK10938	490	putative molybdenum transport ATP-binding protein	99.9
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	99.9
KOG0065|consensus	1391		99.9
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	99.9
cd03215	182	ABC_Carb_Monos_II This family represents domain II	99.9
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	99.9
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	99.9
COG4604	252	CeuD ABC-type enterochelin transport system, ATPas	99.9
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	99.9
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	99.9
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	99.9
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	99.9
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	99.89
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	99.89
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.89
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.89
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	99.89
PRK13409	590	putative ATPase RIL; Provisional	99.89
COG4586	325	ABC-type uncharacterized transport system, ATPase	99.89
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	99.89
PRK10535	648	macrolide transporter ATP-binding /permease protei	99.89
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	99.89
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	99.89
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	99.89
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	99.88
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.88
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	99.88
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.88
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	99.88
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	99.88
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	99.88
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	99.88
cd03216	163	ABC_Carb_Monos_I This family represents the domain	99.88
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	99.88
cd03246	173	ABCC_Protease_Secretion This family represents the	99.88
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	99.88
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	99.88
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	99.88
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	99.87
KOG0059|consensus	885		99.87
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	99.87
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.87
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.87
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	99.87
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	99.87
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	99.87
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	99.87
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	99.87
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	99.86
COG4987	573	CydC ABC-type transport system involved in cytochr	99.86
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.86
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	99.86
PRK13409	590	putative ATPase RIL; Provisional	99.86
COG4988	559	CydD ABC-type transport system involved in cytochr	99.86
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.86
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	99.86
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	99.86
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	99.86
PRK11147	635	ABC transporter ATPase component; Reviewed	99.86
COG4525	259	TauB ABC-type taurine transport system, ATPase com	99.86
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	99.86
KOG0055|consensus	1228		99.86
PLN03073	718	ABC transporter F family; Provisional	99.86
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	99.86
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	99.86
COG4674	249	Uncharacterized ABC-type transport system, ATPase	99.86
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	99.85
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.85
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	99.85
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	99.85
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	99.85
PRK11147	635	ABC transporter ATPase component; Reviewed	99.85
PLN03073	718	ABC transporter F family; Provisional	99.85
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	99.85
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	99.84
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	99.84
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	99.84
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	99.84
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	99.84
KOG0055|consensus	1228		99.84
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	99.84
PRK10522	547	multidrug transporter membrane component/ATP-bindi	99.83
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.83
PLN03232	1495	ABC transporter C family member; Provisional	99.83
COG4107	258	PhnK ABC-type phosphonate transport system, ATPase	99.83
KOG0058|consensus	716		99.82
PLN03130	1622	ABC transporter C family member; Provisional	99.82
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	99.82
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.82
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.82
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.82
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	99.82
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	99.81
PRK00635	1809	excinuclease ABC subunit A; Provisional	99.81
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.81
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	99.81
PTZ00243	1560	ABC transporter; Provisional	99.81
KOG0057|consensus	591		99.81
PLN03232	1495	ABC transporter C family member; Provisional	99.81
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	99.8
cd03279	213	ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex	99.8
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	99.8
KOG0065|consensus	1391		99.8
COG1101	263	PhnK ABC-type uncharacterized transport system, AT	99.8
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	99.79
PRK00635	1809	excinuclease ABC subunit A; Provisional	99.79
PLN03130	1622	ABC transporter C family member; Provisional	99.79
PTZ00243	1560	ABC transporter; Provisional	99.79
COG0488	530	Uup ATPase components of ABC transporters with dup	99.78
cd03278	197	ABC_SMC_barmotin Barmotin is a tight junction-asso	99.78
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.78
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.77
cd03273	251	ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein	99.77
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	99.77
COG4619	223	ABC-type uncharacterized transport system, ATPase	99.77
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	99.76
cd03272	243	ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein	99.76
cd03276	198	ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein	99.76
cd03275	247	ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein	99.75
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	99.75
cd03274	212	ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein	99.73
COG5265	497	ATM1 ABC-type transport system involved in Fe-S cl	99.72
cd03240	204	ABC_Rad50 The catalytic domains of Rad50 are simil	99.7
KOG0054|consensus	1381		99.68
COG4133	209	CcmA ABC-type transport system involved in cytochr	99.65
COG0488	530	Uup ATPase components of ABC transporters with dup	99.65
COG4136	213	ABC-type uncharacterized transport system, ATPase	99.65
cd03277	213	ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein	99.65
KOG0056|consensus	790		99.65
COG4138	248	BtuD ABC-type cobalamin transport system, ATPase c	99.65
COG4778	235	PhnL ABC-type phosphonate transport system, ATPase	99.63
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.62
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.62
KOG0927|consensus	614		99.62
cd03239	178	ABC_SMC_head The structural maintenance of chromos	99.62
COG0178	935	UvrA Excinuclease ATPase subunit [DNA replication,	99.6
COG4170	330	SapD ABC-type antimicrobial peptide transport syst	99.6
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.59
TIGR00618	1042	sbcc exonuclease SbcC. This family is based on the	99.59
cd03241	276	ABC_RecN RecN ATPase involved in DNA repair; ABC (	99.58
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	99.58
KOG0054|consensus	1381		99.57
KOG0062|consensus	582		99.56
PHA02562	562	46 endonuclease subunit; Provisional	99.55
cd03227	162	ABC_Class2 ABC-type Class 2 contains systems invol	99.53
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	99.53
PF00005	137	ABC_tran: ABC transporter This structure is on hol	99.51
KOG0062|consensus	582		99.5
KOG0927|consensus	614		99.5
PRK10869	553	recombination and repair protein; Provisional	99.48
PRK03918	880	chromosome segregation protein; Provisional	99.46
PRK10246	1047	exonuclease subunit SbcC; Provisional	99.44
cd03285	222	ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS	99.4
PRK01156	895	chromosome segregation protein; Provisional	99.38
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	99.35
COG0178	935	UvrA Excinuclease ATPase subunit [DNA replication,	99.35
COG4178	604	ABC-type uncharacterized transport system, permeas	99.33
KOG0066|consensus	807		99.32
KOG2355|consensus	291		99.29
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	99.29
cd03242	270	ABC_RecF RecF is a recombinational DNA repair ATPa	99.27
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	99.27
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	99.24
KOG0066|consensus	807		99.22
smart00534	185	MUTSac ATPase domain of DNA mismatch repair MUTS f	99.22
PRK02224	880	chromosome segregation protein; Provisional	99.18
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	99.16
PRK00064	361	recF recombination protein F; Reviewed	99.14
TIGR00611	365	recf recF protein. All proteins in this family for	99.03
cd03282	204	ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS	98.99
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	98.96
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	98.93
PF02463	220	SMC_N: RecF/RecN/SMC N terminal domain; InterPro:	98.92
PF13304	303	AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T	98.88
KOG0060|consensus	659		98.86
COG2401	593	ABC-type ATPase fused to a predicted acetyltransfe	98.83
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	98.83
PRK14079	349	recF recombination protein F; Provisional	98.82
KOG0063|consensus	592		98.8
cd03284	216	ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr	98.76
PRK00409	782	recombination and DNA strand exchange inhibitor pr	98.76
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	98.72
TIGR01069	771	mutS2 MutS2 family protein. Function of MutS2 is u	98.7
KOG0063|consensus	592		98.69
cd03281	213	ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS	98.63
KOG0064|consensus	728		98.57
PF13558	90	SbcCD_C: Putative exonuclease SbcCD, C subunit; PD	98.55
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	98.45
PRK13695	174	putative NTPase; Provisional	98.38
PRK13830	818	conjugal transfer protein TrbE; Provisional	98.29
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	98.19
cd03286	218	ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS	98.06
PF13175	415	AAA_15: AAA ATPase domain	97.96
cd01125	239	repA Hexameric Replicative Helicase RepA. RepA is	97.94
cd01128	249	rho_factor Transcription termination factor rho is	97.93
cd03287	222	ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS	97.88
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	97.75
PRK08533	230	flagellar accessory protein FlaH; Reviewed	97.74
PRK06067	234	flagellar accessory protein FlaH; Validated	97.7
PRK13891	852	conjugal transfer protein TrbE; Provisional	97.57
COG3910	233	Predicted ATPase [General function prediction only	97.46
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	97.37
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	97.36
KOG0964|consensus	1200		97.35
COG4637	373	Predicted ATPase [General function prediction only	97.31
PF13166	712	AAA_13: AAA domain	97.16
PRK07721	438	fliI flagellum-specific ATP synthase; Validated	97.12
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	96.91
COG0497	557	RecN ATPase involved in DNA repair [DNA replicatio	96.84
PRK13873	811	conjugal transfer ATPase TrbE; Provisional	96.78
TIGR02788	308	VirB11 P-type DNA transfer ATPase VirB11. The VirB	96.62
TIGR00152	188	dephospho-CoA kinase. This model produces scores i	96.5
KOG0962|consensus	1294		96.48
PRK05399	854	DNA mismatch repair protein MutS; Provisional	96.46
PRK13898	800	type IV secretion system ATPase VirB4; Provisional	96.43
KOG0933|consensus	1174		96.32
PRK06793	432	fliI flagellum-specific ATP synthase; Validated	95.97
PRK08699	325	DNA polymerase III subunit delta'; Validated	95.94
COG1195	363	RecF Recombinational DNA repair ATPase (RecF pathw	95.26
COG4694	758	Uncharacterized protein conserved in bacteria [Fun	95.13
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	95.01
KOG0996|consensus	1293		94.56
smart00382	148	AAA ATPases associated with a variety of cellular	94.51
KOG0018|consensus	1141		94.41
PF00488	235	MutS_V: MutS domain V C-terminus.; InterPro: IPR00	94.41
PF13514	1111	AAA_27: AAA domain	94.0
TIGR03880	224	KaiC_arch_3 KaiC domain protein, AF_0351 family. T	93.93
PF09818	448	ABC_ATPase: Predicted ATPase of the ABC class; Int	93.78
cd00561	159	CobA_CobO_BtuR ATP:corrinoid adenosyltransferase B	93.52
TIGR01420	343	pilT_fam pilus retraction protein PilT. This model	93.14
PRK14088	440	dnaA chromosomal replication initiation protein; P	93.05
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	92.95
COG3044	554	Predicted ATPase of the ABC class [General functio	92.43
TIGR01070	840	mutS1 DNA mismatch repair protein MutS.	91.51
PRK04863	1486	mukB cell division protein MukB; Provisional	91.46
TIGR03881	229	KaiC_arch_4 KaiC domain protein, PAE1156 family. M	90.81
PRK13764	602	ATPase; Provisional	89.93
TIGR02903	615	spore_lon_C ATP-dependent protease, Lon family. Me	89.82
COG4938	374	Uncharacterized conserved protein [Function unknow	89.65
PRK07414	178	cob(I)yrinic acid a,c-diamide adenosyltransferase;	89.55
PRK06893	229	DNA replication initiation factor; Validated	89.39
PRK05986	191	cob(I)alamin adenolsyltransferase/cobinamide ATP-d	89.28
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	88.9
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	88.08
PRK04296	190	thymidine kinase; Provisional	87.99

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=6.2e-34  Score=240.52  Aligned_cols=134  Identities=24%  Similarity=0.397  Sum_probs=120.2

Q ss_pred             ceeEEEeeecccccCCCCHhHHHh-------------HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCC
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILD-------------TIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNP   73 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P   73 (203)
                      .+.++||.++  +++.+||-|+..             .++++.++|+.+||.++++.++.+|||||||||+|||||+++|
T Consensus        78 ~vGmVFQ~fn--LFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P  155 (240)
T COG1126          78 KVGMVFQQFN--LFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDP  155 (240)
T ss_pred             hcCeeccccc--ccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCC
Confidence            3557788766  457799999763             3667889999999999999999999999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEee
Q psy8397          74 PIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTI  153 (203)
Q Consensus        74 ~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~  153 (203)
                      +++|+|||||+|||....++++.+++|+++|.|.|++||++.                                      
T Consensus       156 ~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~--------------------------------------  197 (240)
T COG1126         156 KVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMG--------------------------------------  197 (240)
T ss_pred             CEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhH--------------------------------------
Confidence            999999999999999999999999999988888888888864                                      


Q ss_pred             cCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         154 HQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       154 h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                           ++.+.+|||++|++|+++..|+|++++
T Consensus       198 -----FAr~VadrviFmd~G~iie~g~p~~~f  224 (240)
T COG1126         198 -----FAREVADRVIFMDQGKIIEEGPPEEFF  224 (240)
T ss_pred             -----HHHHhhheEEEeeCCEEEEecCHHHHh
Confidence                 578899999999999999999998876

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.97  E-value=5.5e-31  Score=227.65  Aligned_cols=137  Identities=28%  Similarity=0.444  Sum_probs=123.9

Q ss_pred             CceeEEEeeecccccCCCCHhHHHhH----------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHH
Q psy8397           6 HGTIWCWQIISAQYSHRISVDDILDT----------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALEL   69 (203)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL   69 (203)
                      ....|.+|-.+..+..++||.|...+                ++.++++|+.+|+.+++++++++|||||+|||.|||||
T Consensus        75 ~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL  154 (254)
T COG1121          75 LRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARAL  154 (254)
T ss_pred             CeEEEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHh
Confidence            46789999777777888999997643                47899999999999999999999999999999999999


Q ss_pred             hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceE
Q psy8397          70 IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTI  149 (203)
Q Consensus        70 ~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tv  149 (203)
                      +.+|++|+|||||+|+|+.++..++++|++++++|+||+++|||++                                  
T Consensus       155 ~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~----------------------------------  200 (254)
T COG1121         155 AQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLG----------------------------------  200 (254)
T ss_pred             ccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcH----------------------------------
Confidence            9999999999999999999999999999999988889998888875                                  


Q ss_pred             EEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccchh
Q psy8397         150 VCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTIP  186 (203)
Q Consensus       150 i~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~~  186 (203)
                               .+..+||+|+.+++ ++++.|+++++..
T Consensus       201 ---------~v~~~~D~vi~Ln~-~~~~~G~~~~~~~  227 (254)
T COG1121         201 ---------LVMAYFDRVICLNR-HLIASGPPEEVLT  227 (254)
T ss_pred             ---------HhHhhCCEEEEEcC-eeEeccChhhccC
Confidence                     37889999999875 6889999998874

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.97  E-value=2.5e-31  Score=234.24  Aligned_cols=132  Identities=29%  Similarity=0.435  Sum_probs=115.0

Q ss_pred             eEEEeeecccccCCCCHhHHH------------hHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEE
Q psy8397           9 IWCWQIISAQYSHRISVDDIL------------DTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIM   76 (203)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~------------~~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vL   76 (203)
                      .+-||-|.  +....||.++.            +.++||.++|+.+||.++.++++.+|||||||||+|||||+.+|+||
T Consensus        86 GMIFQhFn--LLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iL  163 (339)
T COG1135          86 GMIFQHFN--LLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKIL  163 (339)
T ss_pred             cEEecccc--ccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEE
Confidence            44555554  33557777765            34779999999999999999999999999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecC
Q psy8397          77 FLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQ  155 (203)
Q Consensus        77 lLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~  155 (203)
                      |+|||||+|||.+.+.+++.|++++++ |.||+++||.|+                                        
T Consensus       164 L~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~----------------------------------------  203 (339)
T COG1135         164 LCDEATSALDPETTQSILELLKDINRELGLTIVLITHEME----------------------------------------  203 (339)
T ss_pred             EecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHH----------------------------------------
Confidence            999999999999999999999999875 777777777653                                        


Q ss_pred             chhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         156 PSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       156 ~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                         .+.++|||+.||.+|+++..|+..+++
T Consensus       204 ---Vvk~ic~rVavm~~G~lvE~G~v~~vF  230 (339)
T COG1135         204 ---VVKRICDRVAVLDQGRLVEEGTVSEVF  230 (339)
T ss_pred             ---HHHHHhhhheEeeCCEEEEeccHHHhh
Confidence               588999999999999999999998876

>KOG0061|consensus

Probab=99.97  E-value=3.2e-31  Score=253.56  Aligned_cols=146  Identities=46%  Similarity=0.831  Sum_probs=131.4

Q ss_pred             cccccCCCCHhHHHh---------------HHHHHHHHHHHcCCcccccccCC-----CCCHHHHHHHHHHHHHhcCCCE
Q psy8397          16 SAQYSHRISVDDILD---------------TIGLVDDILDTIGLVLSKHTLCG-----RLSGGQKKRLSIALELIDNPPI   75 (203)
Q Consensus        16 ~~~~~~~~~~~~~~~---------------~~~~v~~~L~~~~L~~~~~~~v~-----~LSgGqrqrl~iA~aL~~~P~v   75 (203)
                      ...+.+.+||+|.+.               .+++|+++++.+||.+++|+.++     .+||||||||+||..|+++|+|
T Consensus       112 dD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~i  191 (613)
T KOG0061|consen  112 DDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSI  191 (613)
T ss_pred             cccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCE
Confidence            444667899998652               46789999999999999999997     5999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecC
Q psy8397          76 MFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQ  155 (203)
Q Consensus        76 LlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~  155 (203)
                      |||||||+|||+.++..+.+.|++++++|+|||+|.|+|+                                        
T Consensus       192 LflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPs----------------------------------------  231 (613)
T KOG0061|consen  192 LFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPS----------------------------------------  231 (613)
T ss_pred             EEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCc----------------------------------------
Confidence            9999999999999999999999999976666666666654                                        


Q ss_pred             chhHHHhhcCEEEEEeCCeEEeeCCcccchhHHHhcCCCCCCCCCCCC
Q psy8397         156 PSATIFEMVDHLYVIAEGHCVYKGSSANTIPYLQTIGLHCPQYHNPAD  203 (203)
Q Consensus       156 ~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~~~~~~~g~~~p~~~~~~d  203 (203)
                        ..+.+++|++++|.+|+++|.|+++++.++|.+.|++||.+.||+|
T Consensus       232 --s~lf~lFD~l~lLs~G~~vy~G~~~~~~~ff~~~G~~~P~~~Npad  277 (613)
T KOG0061|consen  232 --SELFELFDKLLLLSEGEVVYSGSPRELLEFFSSLGFPCPELENPAD  277 (613)
T ss_pred             --HHHHHHHhHhhhhcCCcEEEecCHHHHHHHHHhCCCCCCCcCChHH
Confidence              5689999999999999999999999999999999999999999997

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=99.97  E-value=2.8e-30  Score=227.26  Aligned_cols=136  Identities=29%  Similarity=0.461  Sum_probs=119.1

Q ss_pred             eeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCE
Q psy8397           8 TIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPI   75 (203)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~v   75 (203)
                      ..|.+|...  +++.+|+.|+++.            .++++++++.+||.+..++++++||+|||||++||+||+++|++
T Consensus        80 igy~~~~~~--~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~l  157 (293)
T COG1131          80 IGYVPQEPS--LYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPEL  157 (293)
T ss_pred             eEEEccCCC--CCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCE
Confidence            556665433  6788999998754            35788999999999877999999999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeec
Q psy8397          76 MFLDEPTTGLDSNSTNQCVAMLKALARGG-RTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIH  154 (203)
Q Consensus        76 LlLDEPt~gLD~~~~~~i~~~l~~l~~~g-~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h  154 (203)
                      |||||||+||||.++..+++.|++++++| +||++|||+++                                       
T Consensus       158 liLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~---------------------------------------  198 (293)
T COG1131         158 LILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILE---------------------------------------  198 (293)
T ss_pred             EEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHH---------------------------------------
Confidence            99999999999999999999999999876 78899888875                                       


Q ss_pred             CchhHHHhhcCEEEEEeCCeEEeeCCcccchhHH
Q psy8397         155 QPSATIFEMVDHLYVIAEGHCVYKGSSANTIPYL  188 (203)
Q Consensus       155 ~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~~~~  188 (203)
                          ++..+||+|++|++|++++.|+++++...+
T Consensus       199 ----e~~~~~d~v~il~~G~~~~~g~~~~l~~~~  228 (293)
T COG1131         199 ----EAEELCDRVIILNDGKIIAEGTPEELKEKF  228 (293)
T ss_pred             ----HHHHhCCEEEEEeCCEEEEeCCHHHHHHhh
Confidence                367889999999999999999888865443

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.97  E-value=2.6e-30  Score=221.70  Aligned_cols=138  Identities=29%  Similarity=0.405  Sum_probs=119.6

Q ss_pred             CceeEEEeeecccccCCCCHhHHH-----------hHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCC
Q psy8397           6 HGTIWCWQIISAQYSHRISVDDIL-----------DTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP   74 (203)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~   74 (203)
                      ....+.||.+..+++...-.+|+.           +.++++.++++.+|+.+++++++.+|||||||||+||.+|+++|+
T Consensus        79 ~~vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~  158 (235)
T COG1122          79 QKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPE  158 (235)
T ss_pred             cceEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCC
Confidence            346788888887776554444422           357789999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEee
Q psy8397          75 IMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTI  153 (203)
Q Consensus        75 vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~  153 (203)
                      +|+|||||+|||+.+++.+++.++++.++ |.|+|++||+++                                      
T Consensus       159 iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~--------------------------------------  200 (235)
T COG1122         159 ILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLE--------------------------------------  200 (235)
T ss_pred             EEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHH--------------------------------------
Confidence            99999999999999999999999999976 577777777764                                      


Q ss_pred             cCchhHHHhhcCEEEEEeCCeEEeeCCcccchh
Q psy8397         154 HQPSATIFEMVDHLYVIAEGHCVYKGSSANTIP  186 (203)
Q Consensus       154 h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~~  186 (203)
                           .+..+||++++|++|+++++|+|.+++.
T Consensus       201 -----~~~~~ad~v~vl~~G~i~~~g~p~~i~~  228 (235)
T COG1122         201 -----LVLEYADRVVVLDDGKILADGDPAEIFN  228 (235)
T ss_pred             -----HHHhhCCEEEEEECCEEeecCCHHHHhh
Confidence                 4788999999999999999999987764

>PLN03211 ABC transporter G-25; Provisional

Probab=99.97  E-value=4.4e-30  Score=247.39  Aligned_cols=152  Identities=34%  Similarity=0.628  Sum_probs=131.0

Q ss_pred             eeEEEeeecccccCCCCHhHHHhH---------------HHHHHHHHHHcCCcccccc-----cCCCCCHHHHHHHHHHH
Q psy8397           8 TIWCWQIISAQYSHRISVDDILDT---------------IGLVDDILDTIGLVLSKHT-----LCGRLSGGQKKRLSIAL   67 (203)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~v~~~L~~~~L~~~~~~-----~v~~LSgGqrqrl~iA~   67 (203)
                      ..+++|.  ..+...+||.|++..               .++++++++.+||.+..++     .+++||||||||++||+
T Consensus       142 i~yv~Q~--~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~  219 (659)
T PLN03211        142 TGFVTQD--DILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAH  219 (659)
T ss_pred             eEEECcc--cccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHH
Confidence            4555553  234566899987632               2357889999999887765     45679999999999999


Q ss_pred             HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCc
Q psy8397          68 ELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGR  147 (203)
Q Consensus        68 aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  147 (203)
                      +|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++.                               
T Consensus       220 aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~-------------------------------  268 (659)
T PLN03211        220 EMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSS-------------------------------  268 (659)
T ss_pred             HHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCH-------------------------------
Confidence            9999999999999999999999999999999998778888888888752                               


Q ss_pred             eEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccchhHHHhcCCCCCCCCCCCC
Q psy8397         148 TIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTIPYLQTIGLHCPQYHNPAD  203 (203)
Q Consensus       148 tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~~~~~~~g~~~p~~~~~~d  203 (203)
                                 .+.+++|++++|++|++++.|+++++.++|+++|+.||.++||||
T Consensus       269 -----------~i~~~~D~iilL~~G~iv~~G~~~~~~~~f~~~G~~~P~~~NpAD  313 (659)
T PLN03211        269 -----------RVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPAD  313 (659)
T ss_pred             -----------HHHHhhceEEEecCCcEEEECCHHHHHHHHHHCCCCCCCCCCHHH
Confidence                       367899999999999999999999999999999999999999997

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.97  E-value=1.3e-29  Score=216.90  Aligned_cols=134  Identities=26%  Similarity=0.411  Sum_probs=116.5

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH-------------HHHHHHHHHHcCCccc-ccccCCCCCHHHHHHHHHHHHHhcC
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT-------------IGLVDDILDTIGLVLS-KHTLCGRLSGGQKKRLSIALELIDN   72 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~v~~~L~~~~L~~~-~~~~v~~LSgGqrqrl~iA~aL~~~   72 (203)
                      ....+||. .+ ++..+||.||...             ++.+..-|+.+||... .+.++++|||||++|++||||++.+
T Consensus        86 r~GvlFQ~-gA-LFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAiald  163 (263)
T COG1127          86 RMGVLFQQ-GA-LFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALD  163 (263)
T ss_pred             heeEEeec-cc-cccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcC
Confidence            35567763 43 5688999998642             4456677899999877 8999999999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEE
Q psy8397          73 PPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVC  151 (203)
Q Consensus        73 P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~  151 (203)
                      |+++|+||||+||||.+...+-++|+++++. |.|++++|||++                                    
T Consensus       164 Pell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~------------------------------------  207 (263)
T COG1127         164 PELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLD------------------------------------  207 (263)
T ss_pred             CCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChH------------------------------------
Confidence            9999999999999999999999999999976 778888888764                                    


Q ss_pred             eecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         152 TIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       152 ~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                             .+..+||+++++.+|+|++.|+++++.
T Consensus       208 -------s~~~i~Drv~~L~~gkv~~~Gt~~el~  234 (263)
T COG1127         208 -------SLLTIADRVAVLADGKVIAEGTPEELL  234 (263)
T ss_pred             -------HHHhhhceEEEEeCCEEEEeCCHHHHH
Confidence                   478899999999999999999999886

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=99.96  E-value=9.8e-30  Score=243.01  Aligned_cols=152  Identities=41%  Similarity=0.749  Sum_probs=133.2

Q ss_pred             eeEEEeeecccccCCCCHhHHHh---------------HHHHHHHHHHHcCCcccccccCC------CCCHHHHHHHHHH
Q psy8397           8 TIWCWQIISAQYSHRISVDDILD---------------TIGLVDDILDTIGLVLSKHTLCG------RLSGGQKKRLSIA   66 (203)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~v~~~L~~~~L~~~~~~~v~------~LSgGqrqrl~iA   66 (203)
                      ..+++|.  ..+.+.+||.|++.               ..++++++++.+||.+..|++++      .||||||||++||
T Consensus       101 i~yv~Q~--~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia  178 (617)
T TIGR00955       101 SAYVQQD--DLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFA  178 (617)
T ss_pred             ceeeccc--cccCccCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHH
Confidence            3555653  23556789998763               23468999999999999999988      4999999999999


Q ss_pred             HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCC
Q psy8397          67 LELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGG  146 (203)
Q Consensus        67 ~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  146 (203)
                      ++|+.+|++++|||||+|||+.++..+++.|++++++|+|||+++|+++                               
T Consensus       179 ~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~-------------------------------  227 (617)
T TIGR00955       179 SELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPS-------------------------------  227 (617)
T ss_pred             HHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCC-------------------------------
Confidence            9999999999999999999999999999999999876778888777764                               


Q ss_pred             ceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccchhHHHhcCCCCCCCCCCCC
Q psy8397         147 RTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTIPYLQTIGLHCPQYHNPAD  203 (203)
Q Consensus       147 ~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~~~~~~~g~~~p~~~~~~d  203 (203)
                                 ..+.++||++++|++|++++.|+++++.++|++.|+.||+..||||
T Consensus       228 -----------~~i~~~~D~i~ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad  273 (617)
T TIGR00955       228 -----------SELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPAD  273 (617)
T ss_pred             -----------HHHHHHhceEEEeeCCeEEEECCHHHHHHHHHHcCCCCCCCCChHH
Confidence                       2478899999999999999999999999999999999999999986

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=99.96  E-value=2.9e-30  Score=216.72  Aligned_cols=124  Identities=25%  Similarity=0.435  Sum_probs=114.5

Q ss_pred             ccCCCCHhHHHh------------HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Q psy8397          19 YSHRISVDDILD------------TIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLD   86 (203)
Q Consensus        19 ~~~~~~~~~~~~------------~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD   86 (203)
                      ++.++|++|++.            .++++.++.+.|+|.+++|+++++||.||||||+|||||+++|++++|||||+|||
T Consensus        86 lY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLD  165 (245)
T COG4555          86 LYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLD  165 (245)
T ss_pred             hhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCcc
Confidence            568899999764            36788999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCE
Q psy8397          87 SNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDH  166 (203)
Q Consensus        87 ~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~  166 (203)
                      ..+++.+.+.+++++.+|++||++||.++                                           ++..+||+
T Consensus       166 i~~~r~~~dfi~q~k~egr~viFSSH~m~-------------------------------------------EvealCDr  202 (245)
T COG4555         166 IRTRRKFHDFIKQLKNEGRAVIFSSHIMQ-------------------------------------------EVEALCDR  202 (245)
T ss_pred             HHHHHHHHHHHHHhhcCCcEEEEecccHH-------------------------------------------HHHHhhhe
Confidence            99999999999999988888888888875                                           47889999


Q ss_pred             EEEEeCCeEEeeCCcccch
Q psy8397         167 LYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       167 v~vl~~G~i~~~g~~~~~~  185 (203)
                      ++++++|++++.|+++++.
T Consensus       203 vivlh~Gevv~~gs~~~l~  221 (245)
T COG4555         203 VIVLHKGEVVLEGSIEALD  221 (245)
T ss_pred             EEEEecCcEEEcCCHHHHH
Confidence            9999999999999998764

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=99.96  E-value=1.5e-29  Score=219.39  Aligned_cols=125  Identities=29%  Similarity=0.505  Sum_probs=109.6

Q ss_pred             HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEE
Q psy8397          32 IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCT  110 (203)
Q Consensus        32 ~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~  110 (203)
                      .+.+.++|+.+|+.+++++++.+||||||||+.|||||+++|++|||||||++||+..+.++++.+++++++ |.|||++
T Consensus       116 ~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~v  195 (258)
T COG1120         116 EEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMV  195 (258)
T ss_pred             HHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence            447889999999999999999999999999999999999999999999999999999999999999999954 7777777


Q ss_pred             ecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccchh--HH
Q psy8397         111 IHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTIP--YL  188 (203)
Q Consensus       111 tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~~--~~  188 (203)
                      +||++                                           .+.++||++++|++|++++.|+|++++.  .+
T Consensus       196 lHDlN-------------------------------------------~A~ryad~~i~lk~G~i~a~G~p~evlT~e~l  232 (258)
T COG1120         196 LHDLN-------------------------------------------LAARYADHLILLKDGKIVAQGTPEEVLTEENL  232 (258)
T ss_pred             ecCHH-------------------------------------------HHHHhCCEEEEEECCeEEeecCcchhcCHHHH
Confidence            77764                                           4789999999999999999999998873  34


Q ss_pred             -HhcCCCCCCCC
Q psy8397         189 -QTIGLHCPQYH  199 (203)
Q Consensus       189 -~~~g~~~p~~~  199 (203)
                       +-+|+.+....
T Consensus       233 ~~Vygv~~~~~~  244 (258)
T COG1120         233 REVYGVDADVIE  244 (258)
T ss_pred             HHHhCCceEEEE
Confidence             34677654333

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=99.96  E-value=3.5e-29  Score=221.04  Aligned_cols=135  Identities=31%  Similarity=0.417  Sum_probs=118.0

Q ss_pred             CceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCC
Q psy8397           6 HGTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNP   73 (203)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P   73 (203)
                      ....+++|..  .+++.+|+.|++..            .+++.++++.++|.+..++++++||||||||++||+||+++|
T Consensus        80 ~~ig~v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P  157 (306)
T PRK13537         80 QRVGVVPQFD--NLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDP  157 (306)
T ss_pred             hcEEEEeccC--cCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCC
Confidence            3467777653  35677899997642            245678899999999999999999999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEee
Q psy8397          74 PIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTI  153 (203)
Q Consensus        74 ~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~  153 (203)
                      ++|||||||+|||+.+++.+++.|++++++|.|||++||+++                                      
T Consensus       158 ~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~--------------------------------------  199 (306)
T PRK13537        158 DVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFME--------------------------------------  199 (306)
T ss_pred             CEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH--------------------------------------
Confidence            999999999999999999999999999877888888888874                                      


Q ss_pred             cCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         154 HQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       154 h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                           ++..+||++++|++|++++.|+++++.
T Consensus       200 -----e~~~~~d~i~il~~G~i~~~g~~~~l~  226 (306)
T PRK13537        200 -----EAERLCDRLCVIEEGRKIAEGAPHALI  226 (306)
T ss_pred             -----HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence                 467899999999999999999998775

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.96  E-value=2.5e-29  Score=217.26  Aligned_cols=133  Identities=27%  Similarity=0.425  Sum_probs=116.0

Q ss_pred             eeEEEeeecccccCCCCHhHHHh------------HHHHHHHHHHHcCCcc--cccccCCCCCHHHHHHHHHHHHHhcCC
Q psy8397           8 TIWCWQIISAQYSHRISVDDILD------------TIGLVDDILDTIGLVL--SKHTLCGRLSGGQKKRLSIALELIDNP   73 (203)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~------------~~~~v~~~L~~~~L~~--~~~~~v~~LSgGqrqrl~iA~aL~~~P   73 (203)
                      ..|.-|..  -+++.+||.++..            .+++++++++.+||.+  ++++++.+|||||+|||.+||||+.+|
T Consensus        77 IGYviQqi--gLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP  154 (309)
T COG1125          77 IGYVIQQI--GLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADP  154 (309)
T ss_pred             hhhhhhhc--ccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCC
Confidence            34554433  3567789988763            4778999999999974  899999999999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEe
Q psy8397          74 PIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCT  152 (203)
Q Consensus        74 ~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~  152 (203)
                      ++||+|||+++|||.+|..+-+.++++.++ |+|||++|||++                                     
T Consensus       155 ~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDid-------------------------------------  197 (309)
T COG1125         155 PILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDID-------------------------------------  197 (309)
T ss_pred             CeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHH-------------------------------------
Confidence            999999999999999999999999999876 777777777765                                     


Q ss_pred             ecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         153 IHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       153 ~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                            ++..++|||.+|++|+++..++|+++.
T Consensus       198 ------EA~kLadri~vm~~G~i~Q~~~P~~il  224 (309)
T COG1125         198 ------EALKLADRIAVMDAGEIVQYDTPDEIL  224 (309)
T ss_pred             ------HHHhhhceEEEecCCeEEEeCCHHHHH
Confidence                  468999999999999999999999876

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.96  E-value=4.7e-29  Score=213.59  Aligned_cols=138  Identities=28%  Similarity=0.410  Sum_probs=120.3

Q ss_pred             CCceeEEEeeecccccCCCCHhHHHh----------HHHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhcCC
Q psy8397           5 NHGTIWCWQIISAQYSHRISVDDILD----------TIGLVDDILDTIGLV-LSKHTLCGRLSGGQKKRLSIALELIDNP   73 (203)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~v~~~L~~~~L~-~~~~~~v~~LSgGqrqrl~iA~aL~~~P   73 (203)
                      .+-..+.||.....++++.||++++.          ..+++.++|+.+||. ..+++++.+|||||+||++|||||+.+|
T Consensus        81 ~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~P  160 (252)
T COG1124          81 YRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEP  160 (252)
T ss_pred             ccceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCC
Confidence            45567889988888889999999763          244589999999996 5789999999999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEe
Q psy8397          74 PIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCT  152 (203)
Q Consensus        74 ~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~  152 (203)
                      ++||||||||+||+..+..+++.+.+++++ +.|.|++|||+                                      
T Consensus       161 klLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl--------------------------------------  202 (252)
T COG1124         161 KLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDL--------------------------------------  202 (252)
T ss_pred             CEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcH--------------------------------------
Confidence            999999999999999999999999999864 56666666664                                      


Q ss_pred             ecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         153 IHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       153 ~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                          . .+..+|||++||++|+++..++..++.
T Consensus       203 ----~-~v~~~cdRi~Vm~~G~ivE~~~~~~l~  230 (252)
T COG1124         203 ----A-LVEHMCDRIAVMDNGQIVEIGPTEELL  230 (252)
T ss_pred             ----H-HHHHHhhheeeeeCCeEEEeechhhhh
Confidence                3 478899999999999999999888765

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=2.6e-28  Score=215.64  Aligned_cols=147  Identities=21%  Similarity=0.350  Sum_probs=121.1

Q ss_pred             CceeEEEeeecccccCCCCHhHHHh------------HHHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhcC
Q psy8397           6 HGTIWCWQIISAQYSHRISVDDILD------------TIGLVDDILDTIGLV-LSKHTLCGRLSGGQKKRLSIALELIDN   72 (203)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~v~~~L~~~~L~-~~~~~~v~~LSgGqrqrl~iA~aL~~~   72 (203)
                      ....|.||....+++. .||.|++.            ..+++.++++.+||. +..++++.+||||||||++||++|+.+
T Consensus       105 ~~ig~v~Q~~~~~l~~-~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqrvalA~aL~~~  183 (305)
T PRK13651        105 RRVGVVFQFAEYQLFE-QTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGILAME  183 (305)
T ss_pred             hceEEEeeCccccccc-ccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHHhC
Confidence            3467888865444443 58887653            245688999999996 689999999999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEe
Q psy8397          73 PPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCT  152 (203)
Q Consensus        73 P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~  152 (203)
                      |++|||||||+|||+.++..+++.|++++++|.|||++||+++                                     
T Consensus       184 P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~-------------------------------------  226 (305)
T PRK13651        184 PDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLD-------------------------------------  226 (305)
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHH-------------------------------------
Confidence            9999999999999999999999999999877888888888864                                     


Q ss_pred             ecCchhHHHhhcCEEEEEeCCeEEeeCCcccchh---HHHhcCCCCC
Q psy8397         153 IHQPSATIFEMVDHLYVIAEGHCVYKGSSANTIP---YLQTIGLHCP  196 (203)
Q Consensus       153 ~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~~---~~~~~g~~~p  196 (203)
                            .+.++||++++|++|++++.|+++++..   .+...++..|
T Consensus       227 ------~~~~~adrv~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~p  267 (305)
T PRK13651        227 ------NVLEWTKRTIFFKDGKIIKDGDTYDILSDNKFLIENNMEPP  267 (305)
T ss_pred             ------HHHHhCCEEEEEECCEEEEECCHHHHhcCHHHHHHCCCCCC
Confidence                  3678999999999999999999988652   3334454433

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.96  E-value=1.7e-28  Score=209.14  Aligned_cols=123  Identities=28%  Similarity=0.494  Sum_probs=106.8

Q ss_pred             ceeEEEeeecccccCCCCHhHHHh------------HHHHHHHHHHHcCCccccc-ccCCCCCHHHHHHHHHHHHHhcCC
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILD------------TIGLVDDILDTIGLVLSKH-TLCGRLSGGQKKRLSIALELIDNP   73 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~v~~~L~~~~L~~~~~-~~v~~LSgGqrqrl~iA~aL~~~P   73 (203)
                      ...+.||.+.  +-+.+|+.|++.            ..+++.++++.+||.+..+ ++|.+|||||||||+|||||+.+|
T Consensus        84 ~iGfvFQ~~n--Ll~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P  161 (226)
T COG1136          84 KIGFVFQNFN--LLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNP  161 (226)
T ss_pred             hEEEECccCC--CCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCC
Confidence            3567777554  468899999876            2557788999999997766 889999999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEe
Q psy8397          74 PIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCT  152 (203)
Q Consensus        74 ~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~  152 (203)
                      +++|.||||.+||+.+.+.+++++++++++ |+|||++|||+                                      
T Consensus       162 ~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~--------------------------------------  203 (226)
T COG1136         162 KIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP--------------------------------------  203 (226)
T ss_pred             CeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCH--------------------------------------
Confidence            999999999999999999999999999865 77888888774                                      


Q ss_pred             ecCchhHHHhhcCEEEEEeCCeE
Q psy8397         153 IHQPSATIFEMVDHLYVIAEGHC  175 (203)
Q Consensus       153 ~h~~~~~i~~~~d~v~vl~~G~i  175 (203)
                            .+..+|||++.+.+|++
T Consensus       204 ------~lA~~~dr~i~l~dG~~  220 (226)
T COG1136         204 ------ELAKYADRVIELKDGKI  220 (226)
T ss_pred             ------HHHHhCCEEEEEeCCee
Confidence                  36789999999999984

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=99.96  E-value=1.9e-28  Score=215.40  Aligned_cols=133  Identities=27%  Similarity=0.404  Sum_probs=115.5

Q ss_pred             eeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCE
Q psy8397           8 TIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPI   75 (203)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~v   75 (203)
                      ..|++|..  .++..+|+.|++..            .+++.++++.+||.+..++++++||||||||++||+||+++|++
T Consensus        68 i~~~~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~l  145 (302)
T TIGR01188        68 IGIVPQYA--SVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDV  145 (302)
T ss_pred             cEEecCCC--CCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCE
Confidence            55666642  35567899887642            23578899999999999999999999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecC
Q psy8397          76 MFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQ  155 (203)
Q Consensus        76 LlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~  155 (203)
                      |||||||+|||+.+++.+++.|++++++|.|||++||+++                                        
T Consensus       146 llLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~----------------------------------------  185 (302)
T TIGR01188       146 LFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYME----------------------------------------  185 (302)
T ss_pred             EEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH----------------------------------------
Confidence            9999999999999999999999999877888888888864                                        


Q ss_pred             chhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         156 PSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       156 ~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                         .+..+||++++|++|++++.|+++++.
T Consensus       186 ---~~~~~~d~v~~l~~G~i~~~g~~~~l~  212 (302)
T TIGR01188       186 ---EADKLCDRIAIIDHGRIIAEGTPEELK  212 (302)
T ss_pred             ---HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence               467899999999999999999988764

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=99.96  E-value=2.3e-28  Score=219.57  Aligned_cols=135  Identities=27%  Similarity=0.384  Sum_probs=116.4

Q ss_pred             CceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCC
Q psy8397           6 HGTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNP   73 (203)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P   73 (203)
                      ....+.||.+.  +++..||.|++..            .+++.++++.+||.+..++++++|||||||||+|||||+.+|
T Consensus        82 ~~Ig~v~Q~~~--l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P  159 (343)
T TIGR02314        82 RQIGMIFQHFN--LLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNP  159 (343)
T ss_pred             cCEEEEECCcc--ccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCC
Confidence            35677777643  4566888886532            346788999999999999999999999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEe
Q psy8397          74 PIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCT  152 (203)
Q Consensus        74 ~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~  152 (203)
                      ++|||||||++||+.++..+++.|++++++ |.|||++||+++                                     
T Consensus       160 ~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~-------------------------------------  202 (343)
T TIGR02314       160 KVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMD-------------------------------------  202 (343)
T ss_pred             CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-------------------------------------
Confidence            999999999999999999999999999865 778888887764                                     


Q ss_pred             ecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         153 IHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       153 ~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                            .+.++||++++|++|++++.|++++++
T Consensus       203 ------~v~~~~d~v~vl~~G~iv~~g~~~~v~  229 (343)
T TIGR02314       203 ------VVKRICDCVAVISNGELIEQGTVSEIF  229 (343)
T ss_pred             ------HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence                  467899999999999999999987764

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=99.96  E-value=3.4e-28  Score=218.08  Aligned_cols=135  Identities=28%  Similarity=0.391  Sum_probs=117.2

Q ss_pred             CceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCC
Q psy8397           6 HGTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNP   73 (203)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P   73 (203)
                      ....+++|.  ..++..+|+.|++..            .+++.++++.++|.+..++++++||||||||++||+||+++|
T Consensus       114 ~~ig~v~q~--~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P  191 (340)
T PRK13536        114 ARIGVVPQF--DNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDP  191 (340)
T ss_pred             ccEEEEeCC--ccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCC
Confidence            346677764  335567899987642            234668899999999999999999999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEee
Q psy8397          74 PIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTI  153 (203)
Q Consensus        74 ~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~  153 (203)
                      ++|||||||+||||.++..+++.|++++++|.|||++||+++                                      
T Consensus       192 ~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~--------------------------------------  233 (340)
T PRK13536        192 QLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME--------------------------------------  233 (340)
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH--------------------------------------
Confidence            999999999999999999999999999877888888888864                                      


Q ss_pred             cCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         154 HQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       154 h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                           ++..+||++++|++|++++.|+++++.
T Consensus       234 -----e~~~~~d~i~il~~G~i~~~g~~~~l~  260 (340)
T PRK13536        234 -----EAERLCDRLCVLEAGRKIAEGRPHALI  260 (340)
T ss_pred             -----HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence                 467899999999999999999998764

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=6.6e-28  Score=210.85  Aligned_cols=147  Identities=24%  Similarity=0.386  Sum_probs=120.5

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhcCC
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLV-LSKHTLCGRLSGGQKKRLSIALELIDNP   73 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~-~~~~~~v~~LSgGqrqrl~iA~aL~~~P   73 (203)
                      ...+.+|....+++. .|+.|++..            .+++.++++.+||. ...++++.+||||||||++||++|+.+|
T Consensus        85 ~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p  163 (288)
T PRK13643         85 KVGVVFQFPESQLFE-ETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEP  163 (288)
T ss_pred             hEEEEecCcchhccc-chHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCC
Confidence            456777754333433 477776532            34578889999996 5789999999999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEee
Q psy8397          74 PIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTI  153 (203)
Q Consensus        74 ~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~  153 (203)
                      ++|||||||+|||+.++..+++.|++++++|.|||++||+++                                      
T Consensus       164 ~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~--------------------------------------  205 (288)
T PRK13643        164 EVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMD--------------------------------------  205 (288)
T ss_pred             CEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH--------------------------------------
Confidence            999999999999999999999999999866888888888863                                      


Q ss_pred             cCchhHHHhhcCEEEEEeCCeEEeeCCcccchh---HHHhcCCCCCC
Q psy8397         154 HQPSATIFEMVDHLYVIAEGHCVYKGSSANTIP---YLQTIGLHCPQ  197 (203)
Q Consensus       154 h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~~---~~~~~g~~~p~  197 (203)
                           .+..+||++++|++|++++.|+++++..   .++..|+.+|.
T Consensus       206 -----~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~  247 (288)
T PRK13643        206 -----DVADYADYVYLLEKGHIISCGTPSDVFQEVDFLKAHELGVPK  247 (288)
T ss_pred             -----HHHHhCCEEEEEECCEEEEECCHHHHHcCHHHHHHcCCCCCh
Confidence                 3678999999999999999999988753   45566776664

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=99.96  E-value=3.1e-28  Score=220.08  Aligned_cols=135  Identities=25%  Similarity=0.388  Sum_probs=117.7

Q ss_pred             CceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCC
Q psy8397           6 HGTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNP   73 (203)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P   73 (203)
                      ....++||...  +++.+||.+++..            .+++.++++.+||.+..++++.+|||||||||+|||||+.+|
T Consensus        79 r~ig~vfQ~~~--l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P  156 (362)
T TIGR03258        79 RGLALLFQNYA--LFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEP  156 (362)
T ss_pred             CCEEEEECCcc--cCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence            35677887543  5577999997742            346889999999999999999999999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEE
Q psy8397          74 PIMFLDEPTTGLDSNSTNQCVAMLKALARG--GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVC  151 (203)
Q Consensus        74 ~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~--g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~  151 (203)
                      ++|||||||+|||+..+..+++.|+++.++  |.|+|++||+++                                    
T Consensus       157 ~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~------------------------------------  200 (362)
T TIGR03258       157 DVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQD------------------------------------  200 (362)
T ss_pred             CEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHH------------------------------------
Confidence            999999999999999999999999999865  678888888754                                    


Q ss_pred             eecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         152 TIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       152 ~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                             ++..+||++++|++|+++..|+++++.
T Consensus       201 -------ea~~l~dri~vl~~G~i~~~g~~~~~~  227 (362)
T TIGR03258       201 -------DALTLADKAGIMKDGRLAAHGEPQALY  227 (362)
T ss_pred             -------HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence                   467899999999999999999998774

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=4.3e-28  Score=218.64  Aligned_cols=135  Identities=19%  Similarity=0.278  Sum_probs=118.0

Q ss_pred             CceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCC
Q psy8397           6 HGTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNP   73 (203)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P   73 (203)
                      ....++||..  .+++.+||.|++..            .+++.++++.+||.+..++++.+|||||||||+|||||+.+|
T Consensus        76 r~ig~v~Q~~--~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P  153 (356)
T PRK11650         76 RDIAMVFQNY--ALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREP  153 (356)
T ss_pred             CCEEEEeCCc--cccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence            4577888754  35567999997642            346788999999999999999999999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEe
Q psy8397          74 PIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCT  152 (203)
Q Consensus        74 ~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~  152 (203)
                      ++|||||||++||+.++..+++.|+++.++ |.|+|++||+++                                     
T Consensus       154 ~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-------------------------------------  196 (356)
T PRK11650        154 AVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQV-------------------------------------  196 (356)
T ss_pred             CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-------------------------------------
Confidence            999999999999999999999999998865 788888888764                                     


Q ss_pred             ecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         153 IHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       153 ~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                            ++..+||++++|++|+++..|+++++.
T Consensus       197 ------ea~~l~D~i~vl~~G~i~~~g~~~~~~  223 (356)
T PRK11650        197 ------EAMTLADRVVVMNGGVAEQIGTPVEVY  223 (356)
T ss_pred             ------HHHHhCCEEEEEeCCEEEEECCHHHHH
Confidence                  478899999999999999999998774

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=7.1e-28  Score=210.84  Aligned_cols=135  Identities=24%  Similarity=0.324  Sum_probs=114.1

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhcCC
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLV-LSKHTLCGRLSGGQKKRLSIALELIDNP   73 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~-~~~~~~v~~LSgGqrqrl~iA~aL~~~P   73 (203)
                      ...++||.....++ ..|+.+++..            .+++.++++.+||. ...++++.+||||||||++||+||+.+|
T Consensus        86 ~ig~v~q~~~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P  164 (290)
T PRK13634         86 KVGIVFQFPEHQLF-EETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEP  164 (290)
T ss_pred             hEEEEeeCchhhhh-hhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence            46788886543444 3588776531            34678899999997 6789999999999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEe
Q psy8397          74 PIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCT  152 (203)
Q Consensus        74 ~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~  152 (203)
                      ++|||||||+|||+.++..+++.|++++++ |.|||++||+++                                     
T Consensus       165 ~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~-------------------------------------  207 (290)
T PRK13634        165 EVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME-------------------------------------  207 (290)
T ss_pred             CEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-------------------------------------
Confidence            999999999999999999999999999764 778888887753                                     


Q ss_pred             ecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         153 IHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       153 ~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                            .+..+||++++|++|++++.|+++++.
T Consensus       208 ------~~~~~~drv~~l~~G~i~~~g~~~~~~  234 (290)
T PRK13634        208 ------DAARYADQIVVMHKGTVFLQGTPREIF  234 (290)
T ss_pred             ------HHHHhCCEEEEEECCEEEEECCHHHHh
Confidence                  467899999999999999999988764

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=99.95  E-value=4.5e-28  Score=218.26  Aligned_cols=135  Identities=26%  Similarity=0.409  Sum_probs=117.9

Q ss_pred             CceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCC
Q psy8397           6 HGTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNP   73 (203)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P   73 (203)
                      ....++||...  +++.+||.|++..            .++++++++.+||.++.++++.+|||||||||+|||||+.+|
T Consensus        76 r~ig~v~Q~~~--lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P  153 (353)
T TIGR03265        76 RDYGIVFQSYA--LFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSP  153 (353)
T ss_pred             CCEEEEeCCcc--cCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence            35678887543  4567999997742            357889999999999999999999999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEe
Q psy8397          74 PIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCT  152 (203)
Q Consensus        74 ~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~  152 (203)
                      ++|||||||++||+.++..+++.|+++.++ |.|+|++||+++                                     
T Consensus       154 ~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~-------------------------------------  196 (353)
T TIGR03265       154 GLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQE-------------------------------------  196 (353)
T ss_pred             CEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-------------------------------------
Confidence            999999999999999999999999998865 778888888754                                     


Q ss_pred             ecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         153 IHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       153 ~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                            ++..+||++++|++|+++..|+++++.
T Consensus       197 ------ea~~l~d~i~vl~~G~i~~~g~~~~~~  223 (353)
T TIGR03265       197 ------EALSMADRIVVMNHGVIEQVGTPQEIY  223 (353)
T ss_pred             ------HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence                  468899999999999999999998765

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=99.95  E-value=5.4e-28  Score=217.71  Aligned_cols=135  Identities=22%  Similarity=0.357  Sum_probs=117.7

Q ss_pred             CceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCC
Q psy8397           6 HGTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNP   73 (203)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P   73 (203)
                      ....++||...  +++.+||.|++..            .+++.++++.+||.++.++++.+|||||||||+|||||+.+|
T Consensus        78 r~ig~vfQ~~~--lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P  155 (351)
T PRK11432         78 RDICMVFQSYA--LFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKP  155 (351)
T ss_pred             CCEEEEeCCcc--cCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence            45678887543  4567899987642            357788999999999999999999999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEe
Q psy8397          74 PIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCT  152 (203)
Q Consensus        74 ~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~  152 (203)
                      ++|||||||+|||+..+..+.+.|+++.++ |.|+|++||+++                                     
T Consensus       156 ~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-------------------------------------  198 (351)
T PRK11432        156 KVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQS-------------------------------------  198 (351)
T ss_pred             CEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-------------------------------------
Confidence            999999999999999999999999999765 788888888764                                     


Q ss_pred             ecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         153 IHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       153 ~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                            ++..+||++++|++|+++..|+++++.
T Consensus       199 ------e~~~laD~i~vm~~G~i~~~g~~~~~~  225 (351)
T PRK11432        199 ------EAFAVSDTVIVMNKGKIMQIGSPQELY  225 (351)
T ss_pred             ------HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence                  467899999999999999999998764

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.95  E-value=7.5e-28  Score=203.36  Aligned_cols=134  Identities=25%  Similarity=0.374  Sum_probs=112.8

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH-------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCC
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT-------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNP   73 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P   73 (203)
                      ...|.+|..  .++..+|+.|++..             .+++.++++.+|+.+..++++++|||||||||+||+||+.+|
T Consensus        78 ~i~~v~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p  155 (235)
T cd03261          78 RMGMLFQSG--ALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDP  155 (235)
T ss_pred             ceEEEccCc--ccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence            455666643  34456788886532             235677899999998889999999999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEe
Q psy8397          74 PIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCT  152 (203)
Q Consensus        74 ~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~  152 (203)
                      ++|||||||+|||+.++..+++.|+++.++ |.|||++||+++                                     
T Consensus       156 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~-------------------------------------  198 (235)
T cd03261         156 ELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLD-------------------------------------  198 (235)
T ss_pred             CEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-------------------------------------
Confidence            999999999999999999999999999864 778888888753                                     


Q ss_pred             ecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         153 IHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       153 ~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                            .+..+||++++|++|++++.|+++++.
T Consensus       199 ------~~~~~~d~v~~l~~G~i~~~g~~~~~~  225 (235)
T cd03261         199 ------TAFAIADRIAVLYDGKIVAEGTPEELR  225 (235)
T ss_pred             ------HHHHhcCEEEEEECCeEEEecCHHHHc
Confidence                  367899999999999999999887654

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.95  E-value=1.3e-28  Score=217.85  Aligned_cols=135  Identities=21%  Similarity=0.303  Sum_probs=118.8

Q ss_pred             CceeEEEeeecccccCCCCHhHHH------------hHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCC
Q psy8397           6 HGTIWCWQIISAQYSHRISVDDIL------------DTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNP   73 (203)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P   73 (203)
                      +-+..+||.|.  +.+..||.|+.            ++++++.++|+.+||..+.++++.+|||||||||.|||||+.+|
T Consensus       106 ~~~sMVFQ~Fa--LlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~  183 (386)
T COG4175         106 KKISMVFQSFA--LLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDP  183 (386)
T ss_pred             hhhhhhhhhhc--cccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCC
Confidence            34556777554  34557888765            35778999999999999999999999999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEe
Q psy8397          74 PIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCT  152 (203)
Q Consensus        74 ~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~  152 (203)
                      +|||+|||+|+|||--+.++.+-|.+|.++ .+|||++|||++|                                    
T Consensus       184 ~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdE------------------------------------  227 (386)
T COG4175         184 DILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDE------------------------------------  227 (386)
T ss_pred             CEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHH------------------------------------
Confidence            999999999999999999999999999876 7888888888753                                    


Q ss_pred             ecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         153 IHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       153 ~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                             +.++.|||.+|++|+|+..|+|+++.
T Consensus       228 -------AlriG~rIaimkdG~ivQ~Gtp~eIl  253 (386)
T COG4175         228 -------ALRIGDRIAIMKDGEIVQVGTPEEIL  253 (386)
T ss_pred             -------HHhccceEEEecCCeEEEeCCHHHHH
Confidence                   68999999999999999999999886

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.95  E-value=5.8e-28  Score=207.50  Aligned_cols=109  Identities=23%  Similarity=0.315  Sum_probs=94.4

Q ss_pred             CCceeEEEeeecccccCCCCHhHHHh------------HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcC
Q psy8397           5 NHGTIWCWQIISAQYSHRISVDDILD------------TIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDN   72 (203)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~   72 (203)
                      .....+.||...  +.+..||.+|..            ..+++.++|+.+||..+.++++.+|||||||||+|||||+.+
T Consensus        71 ~~~~~~vFQ~~~--LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~  148 (248)
T COG1116          71 GPDIGYVFQEDA--LLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATR  148 (248)
T ss_pred             CCCEEEEeccCc--ccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcC
Confidence            456678887544  568899999763            345799999999999999999999999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCC
Q psy8397          73 PPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPS  115 (203)
Q Consensus        73 P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~  115 (203)
                      |++|+||||+++||..++..+.+.+.++.++ ++||+++|||++
T Consensus       149 P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~  192 (248)
T COG1116         149 PKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVD  192 (248)
T ss_pred             CCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH
Confidence            9999999999999999999999999998754 677777777764

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.95  E-value=1.5e-27  Score=208.45  Aligned_cols=136  Identities=26%  Similarity=0.395  Sum_probs=114.0

Q ss_pred             CceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCc--ccccccCCCCCHHHHHHHHHHHHHhc
Q psy8397           6 HGTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLV--LSKHTLCGRLSGGQKKRLSIALELID   71 (203)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~--~~~~~~v~~LSgGqrqrl~iA~aL~~   71 (203)
                      ....+++|.....+ ...|+.|++..            .+++.++++.+||.  +..++++.+||||||||++||+||+.
T Consensus        83 ~~ig~v~q~~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~  161 (287)
T PRK13637         83 KKVGLVFQYPEYQL-FEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAM  161 (287)
T ss_pred             hceEEEecCchhcc-ccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHc
Confidence            34567777643233 24688876532            24678899999997  67899999999999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEE
Q psy8397          72 NPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIV  150 (203)
Q Consensus        72 ~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi  150 (203)
                      +|++|||||||+|||+.++..+++.|++++++ |.|||++||+++                                   
T Consensus       162 ~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-----------------------------------  206 (287)
T PRK13637        162 EPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSME-----------------------------------  206 (287)
T ss_pred             CCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-----------------------------------
Confidence            99999999999999999999999999999864 788888888754                                   


Q ss_pred             EeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         151 CTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       151 ~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                              .+..+||++++|++|++++.|+++++.
T Consensus       207 --------~~~~~~drv~~l~~G~i~~~g~~~~~~  233 (287)
T PRK13637        207 --------DVAKLADRIIVMNKGKCELQGTPREVF  233 (287)
T ss_pred             --------HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence                    366889999999999999999988764

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=99.95  E-value=1.2e-27  Score=201.74  Aligned_cols=133  Identities=25%  Similarity=0.452  Sum_probs=113.2

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH----------------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHH
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT----------------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLS   64 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~   64 (203)
                      +..|.+|..  .++..+|+.|++..                      .+++.++++.+|+....++++.+||||||||++
T Consensus        76 ~i~~v~q~~--~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~  153 (236)
T cd03219          76 GIGRTFQIP--RLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLE  153 (236)
T ss_pred             CEEEEeccc--ccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHH
Confidence            456667653  34566788876431                      235678899999998899999999999999999


Q ss_pred             HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhh
Q psy8397          65 IALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALAR  144 (203)
Q Consensus        65 iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (203)
                      ||+||+.+|++|||||||+|||+.++..+++.|+++.++|+|||++||+++                             
T Consensus       154 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-----------------------------  204 (236)
T cd03219         154 IARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMD-----------------------------  204 (236)
T ss_pred             HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-----------------------------
Confidence            999999999999999999999999999999999999867888888888864                             


Q ss_pred             CCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccc
Q psy8397         145 GGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANT  184 (203)
Q Consensus       145 ~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~  184 (203)
                                    .+..+||+++++++|+++..|+++++
T Consensus       205 --------------~~~~~~d~i~~l~~G~i~~~~~~~~~  230 (236)
T cd03219         205 --------------VVMSLADRVTVLDQGRVIAEGTPDEV  230 (236)
T ss_pred             --------------HHHHhCCEEEEEeCCEEEeecCHHHh
Confidence                          36788999999999999999988765

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=99.95  E-value=1.1e-27  Score=216.87  Aligned_cols=136  Identities=21%  Similarity=0.302  Sum_probs=118.2

Q ss_pred             CCceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcC
Q psy8397           5 NHGTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDN   72 (203)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~   72 (203)
                      .+...++||.+  .+++.+||.|++..            .+++.++++.+||....++++.+|||||||||+|||||+.+
T Consensus        70 r~~i~~v~Q~~--~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~  147 (363)
T TIGR01186        70 RKKIGMVFQQF--ALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAE  147 (363)
T ss_pred             hCcEEEEECCC--cCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence            35678888753  35677899887532            35688899999999999999999999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEE
Q psy8397          73 PPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVC  151 (203)
Q Consensus        73 P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~  151 (203)
                      |++|||||||+|||+.++..+.+.+.++.++ |+|||++||+++                                    
T Consensus       148 p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~------------------------------------  191 (363)
T TIGR01186       148 PDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLD------------------------------------  191 (363)
T ss_pred             CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH------------------------------------
Confidence            9999999999999999999999999999754 778888888764                                    


Q ss_pred             eecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         152 TIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       152 ~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                             ++..+||++++|++|+++..|+++++.
T Consensus       192 -------ea~~~~drI~vl~~G~iv~~g~~~ei~  218 (363)
T TIGR01186       192 -------EAIRIGDRIVIMKAGEIVQVGTPDEIL  218 (363)
T ss_pred             -------HHHHhCCEEEEEeCCEEEeeCCHHHHH
Confidence                   367899999999999999999988764

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.95  E-value=1.7e-27  Score=206.77  Aligned_cols=146  Identities=25%  Similarity=0.309  Sum_probs=118.3

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCC
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP   74 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~   74 (203)
                      ...+.+|.....+ ...|+.+++..            .+++.++++.+||.+..++++.+||||||||++||+||+.+|+
T Consensus        80 ~i~~v~q~~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~  158 (274)
T PRK13647         80 KVGLVFQDPDDQV-FSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPD  158 (274)
T ss_pred             hEEEEecChhhhh-ccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence            3566776543233 34688776642            2457889999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeec
Q psy8397          75 IMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIH  154 (203)
Q Consensus        75 vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h  154 (203)
                      +|||||||+|||+.++..+++.|++++++|.|||++||+++                                       
T Consensus       159 llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~---------------------------------------  199 (274)
T PRK13647        159 VIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVD---------------------------------------  199 (274)
T ss_pred             EEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH---------------------------------------
Confidence            99999999999999999999999999866888888888864                                       


Q ss_pred             CchhHHHhhcCEEEEEeCCeEEeeCCcccch--hHHHhcCCCCC
Q psy8397         155 QPSATIFEMVDHLYVIAEGHCVYKGSSANTI--PYLQTIGLHCP  196 (203)
Q Consensus       155 ~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~--~~~~~~g~~~p  196 (203)
                          .+.++||++++|++|++++.|+++.+.  ..++..++..|
T Consensus       200 ----~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~  239 (274)
T PRK13647        200 ----LAAEWADQVIVLKEGRVLAEGDKSLLTDEDIVEQAGLRLP  239 (274)
T ss_pred             ----HHHHhCCEEEEEECCEEEEECCHHHhcCHHHHHHcCCCCC
Confidence                367899999999999999999986542  23444555544

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=99.95  E-value=1.1e-27  Score=210.57  Aligned_cols=134  Identities=28%  Similarity=0.388  Sum_probs=114.6

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCC
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP   74 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~   74 (203)
                      ...|.+|..  .+++.+|+.|++..            .+++.++++.++|.+..++++++||||||||++||+||+.+|+
T Consensus        78 ~i~~v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~  155 (303)
T TIGR01288        78 AIGVVPQFD--NLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQ  155 (303)
T ss_pred             cEEEEeccc--cCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCC
Confidence            455666643  34566888887642            2346678999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeec
Q psy8397          75 IMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIH  154 (203)
Q Consensus        75 vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h  154 (203)
                      +|||||||+|||+.++..+++.|++++++|.|||++||+++                                       
T Consensus       156 lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~---------------------------------------  196 (303)
T TIGR01288       156 LLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME---------------------------------------  196 (303)
T ss_pred             EEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH---------------------------------------
Confidence            99999999999999999999999999877888888888864                                       


Q ss_pred             CchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         155 QPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       155 ~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                          .+..+||++++|++|++++.|+++++.
T Consensus       197 ----~~~~~~d~i~~l~~G~i~~~g~~~~~~  223 (303)
T TIGR01288       197 ----EAERLCDRLCVLESGRKIAEGRPHALI  223 (303)
T ss_pred             ----HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence                467899999999999999999988764

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.95  E-value=2e-27  Score=207.64  Aligned_cols=135  Identities=24%  Similarity=0.331  Sum_probs=114.6

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhcCC
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLV-LSKHTLCGRLSGGQKKRLSIALELIDNP   73 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~-~~~~~~v~~LSgGqrqrl~iA~aL~~~P   73 (203)
                      +..+.+|.....++ .+|+.|++..            .+++.++++.+||. ...++++++||||||||++||+||+.+|
T Consensus        86 ~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p  164 (287)
T PRK13641         86 KVSLVFQFPEAQLF-ENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEP  164 (287)
T ss_pred             ceEEEEeChhhhhc-cchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence            56677776432333 4688886532            34578899999997 6889999999999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEee
Q psy8397          74 PIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTI  153 (203)
Q Consensus        74 ~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~  153 (203)
                      ++|||||||+|||+.++..+.+.|+++.++|.|||++||+++                                      
T Consensus       165 ~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~--------------------------------------  206 (287)
T PRK13641        165 EILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD--------------------------------------  206 (287)
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH--------------------------------------
Confidence            999999999999999999999999999866888888888864                                      


Q ss_pred             cCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         154 HQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       154 h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                           .+..+||++++|++|++++.|+++++.
T Consensus       207 -----~~~~~~d~v~~l~~G~i~~~g~~~~~~  233 (287)
T PRK13641        207 -----DVAEYADDVLVLEHGKLIKHASPKEIF  233 (287)
T ss_pred             -----HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence                 467899999999999999999988654

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.95  E-value=2.6e-27  Score=210.69  Aligned_cols=146  Identities=23%  Similarity=0.348  Sum_probs=118.2

Q ss_pred             ceeEEEeeecccccCCCCHhHHHh------------HHHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhcCC
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILD------------TIGLVDDILDTIGLV-LSKHTLCGRLSGGQKKRLSIALELIDNP   73 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~v~~~L~~~~L~-~~~~~~v~~LSgGqrqrl~iA~aL~~~P   73 (203)
                      ...+++|....+++. .|+.|++.            ..+++.++++.+||. ...++++.+||||||||++|||||+.+|
T Consensus       117 ~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqRvaiAraL~~~p  195 (320)
T PRK13631        117 RVSMVFQFPEYQLFK-DTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQP  195 (320)
T ss_pred             cEEEEEECchhcccc-chHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHHHHHHHHHHHHHcCC
Confidence            356777765333433 47777542            234678899999997 6789999999999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEee
Q psy8397          74 PIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTI  153 (203)
Q Consensus        74 ~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~  153 (203)
                      ++|||||||+|||+.++..+++.|+++.++|+|||++||+++                                      
T Consensus       196 ~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~--------------------------------------  237 (320)
T PRK13631        196 EILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTME--------------------------------------  237 (320)
T ss_pred             CEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH--------------------------------------
Confidence            999999999999999999999999999866888888888864                                      


Q ss_pred             cCchhHHHhhcCEEEEEeCCeEEeeCCcccchh---HHHhcCCCCC
Q psy8397         154 HQPSATIFEMVDHLYVIAEGHCVYKGSSANTIP---YLQTIGLHCP  196 (203)
Q Consensus       154 h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~~---~~~~~g~~~p  196 (203)
                           .+..+||++++|++|+++..|+++++..   .++..++..|
T Consensus       238 -----~~~~~adri~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~p  278 (320)
T PRK13631        238 -----HVLEVADEVIVMDKGKILKTGTPYEIFTDQHIINSTSIQVP  278 (320)
T ss_pred             -----HHHHhCCEEEEEECCEEEEeCCHHHHhcCHHHHHHcCCCCC
Confidence                 3678999999999999999999987642   3444455444

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=99.95  E-value=1.5e-27  Score=213.17  Aligned_cols=137  Identities=26%  Similarity=0.388  Sum_probs=116.2

Q ss_pred             CceeEEEeeecccccCCCCHhHHHh--------------HHHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHh
Q psy8397           6 HGTIWCWQIISAQYSHRISVDDILD--------------TIGLVDDILDTIGLV-LSKHTLCGRLSGGQKKRLSIALELI   70 (203)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~v~~~L~~~~L~-~~~~~~v~~LSgGqrqrl~iA~aL~   70 (203)
                      ....+.||.....+++.+|+.+++.              ..+++.++++.+||. ...++++.+||||||||++||+||+
T Consensus        98 ~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~  177 (331)
T PRK15079         98 SDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALI  177 (331)
T ss_pred             CceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHh
Confidence            3577888876444667788888642              134577899999995 5789999999999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceE
Q psy8397          71 DNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTI  149 (203)
Q Consensus        71 ~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tv  149 (203)
                      .+|++||+||||+|||+.++..+++.|+++.++ |.|+|++|||++                                  
T Consensus       178 ~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~----------------------------------  223 (331)
T PRK15079        178 LEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLA----------------------------------  223 (331)
T ss_pred             cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH----------------------------------
Confidence            999999999999999999999999999999864 778888888763                                  


Q ss_pred             EEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         150 VCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       150 i~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                               .+..+||++++|++|++++.|+++++.
T Consensus       224 ---------~~~~~~dri~vl~~G~ive~g~~~~i~  250 (331)
T PRK15079        224 ---------VVKHISDRVLVMYLGHAVELGTYDEVY  250 (331)
T ss_pred             ---------HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence                     467899999999999999999987764

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.95  E-value=1.3e-27  Score=245.57  Aligned_cols=153  Identities=34%  Similarity=0.596  Sum_probs=131.0

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH---------------HHHHHHHHHHcCCcccccccCC----CCCHHHHHHHHHHH
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT---------------IGLVDDILDTIGLVLSKHTLCG----RLSGGQKKRLSIAL   67 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~v~~~L~~~~L~~~~~~~v~----~LSgGqrqrl~iA~   67 (203)
                      .+.+++|..  .+...+||.|++..               .++++++++.+||.+.+|+.++    +||||||||++||+
T Consensus       837 ~i~yv~Q~~--~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~  914 (1394)
T TIGR00956       837 SIGYVQQQD--LHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGV  914 (1394)
T ss_pred             ceeeecccc--cCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHH
Confidence            345666542  24566899987642               2457899999999999999998    79999999999999


Q ss_pred             HHhcCCC-EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCC
Q psy8397          68 ELIDNPP-IMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGG  146 (203)
Q Consensus        68 aL~~~P~-vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  146 (203)
                      +|+.+|+ +|||||||+|||+.++..+++.|++++++|+|||+++|+++.                              
T Consensus       915 aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~------------------------------  964 (1394)
T TIGR00956       915 ELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSA------------------------------  964 (1394)
T ss_pred             HHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCH------------------------------
Confidence            9999997 999999999999999999999999998778888888888753                              


Q ss_pred             ceEEEeecCchhHHHhhcCEEEEEeCC-eEEeeCCc----ccchhHHHhcCC-CCCCCCCCCC
Q psy8397         147 RTIVCTIHQPSATIFEMVDHLYVIAEG-HCVYKGSS----ANTIPYLQTIGL-HCPQYHNPAD  203 (203)
Q Consensus       147 ~tvi~~~h~~~~~i~~~~d~v~vl~~G-~i~~~g~~----~~~~~~~~~~g~-~~p~~~~~~d  203 (203)
                                  .+.+.||++++|++| ++++.|++    .++.+||+..|. .||+..||||
T Consensus       965 ------------~~~~~~D~vl~L~~GG~iv~~G~~~~~~~~~~~yf~~~G~~~~p~~~NpAd 1015 (1394)
T TIGR00956       965 ------------ILFEEFDRLLLLQKGGQTVYFGDLGENSHTIINYFEKHGAPKCPEDANPAE 1015 (1394)
T ss_pred             ------------HHHHhcCEEEEEcCCCEEEEECCcccccchHHHHHHhcCCCCCCCCCCHHH
Confidence                        356789999999987 99999997    457899999996 9999999997

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=99.95  E-value=5.3e-28  Score=216.62  Aligned_cols=137  Identities=22%  Similarity=0.348  Sum_probs=123.0

Q ss_pred             CCCceeEEEeeecccccCCCCHhHHHh------------HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhc
Q psy8397           4 SNHGTIWCWQIISAQYSHRISVDDILD------------TIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELID   71 (203)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~   71 (203)
                      .+.+..++||...  +++.|||.|++.            ..++|.++.+.++|.+..++++.+|||||||||+|||||+.
T Consensus        73 ~~R~iamVFQ~yA--LyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr  150 (338)
T COG3839          73 EKRGIAMVFQNYA--LYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVR  150 (338)
T ss_pred             hHCCEEEEeCCcc--ccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhc
Confidence            3467888998644  457799999763            46789999999999999999999999999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEE
Q psy8397          72 NPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIV  150 (203)
Q Consensus        72 ~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi  150 (203)
                      +|+++|||||+|+||...+..+...|+++.++ |.|+|++|||..                                   
T Consensus       151 ~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~-----------------------------------  195 (338)
T COG3839         151 KPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQV-----------------------------------  195 (338)
T ss_pred             CCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHH-----------------------------------
Confidence            99999999999999999999999999999876 888888888853                                   


Q ss_pred             EeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         151 CTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       151 ~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                              ++..++|||.+|++|++...|+|.++.
T Consensus       196 --------EAmtladri~Vm~~G~i~Q~g~p~ely  222 (338)
T COG3839         196 --------EAMTLADRIVVMNDGRIQQVGTPLELY  222 (338)
T ss_pred             --------HHHhhCCEEEEEeCCeeeecCChHHHh
Confidence                    478899999999999999999999886

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=1.9e-27  Score=211.98  Aligned_cols=136  Identities=19%  Similarity=0.277  Sum_probs=113.6

Q ss_pred             ceeEEEeeecccccCCCCHhHHHh------------------HHHHHHHHHHHcCCcc---cccccCCCCCHHHHHHHHH
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILD------------------TIGLVDDILDTIGLVL---SKHTLCGRLSGGQKKRLSI   65 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~v~~~L~~~~L~~---~~~~~v~~LSgGqrqrl~i   65 (203)
                      ...+.||.....+++.+++.+.+.                  ..+++.++++.+||.+   ..++++.+|||||||||+|
T Consensus        90 ~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~i  169 (330)
T PRK15093         90 NVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMI  169 (330)
T ss_pred             CEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHH
Confidence            466788765544556677765432                  1246788999999974   4589999999999999999


Q ss_pred             HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhh
Q psy8397          66 ALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALAR  144 (203)
Q Consensus        66 A~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (203)
                      |+||+.+|++|||||||+|||+.++..+++.|+++.++ |.|||++||+++                             
T Consensus       170 ArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~-----------------------------  220 (330)
T PRK15093        170 AIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQ-----------------------------  220 (330)
T ss_pred             HHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-----------------------------
Confidence            99999999999999999999999999999999999864 778888888753                             


Q ss_pred             CCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         145 GGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       145 ~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                                    .+..+||++++|++|+|++.|+++++.
T Consensus       221 --------------~v~~~~dri~vm~~G~ive~g~~~~i~  247 (330)
T PRK15093        221 --------------MLSQWADKINVLYCGQTVETAPSKELV  247 (330)
T ss_pred             --------------HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence                          467899999999999999999987764

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.95  E-value=1.5e-27  Score=211.08  Aligned_cols=137  Identities=25%  Similarity=0.394  Sum_probs=117.9

Q ss_pred             CceeEEEeeecccccCCCCHhHHH--------------hHHHHHHHHHHHcCCcc---cccccCCCCCHHHHHHHHHHHH
Q psy8397           6 HGTIWCWQIISAQYSHRISVDDIL--------------DTIGLVDDILDTIGLVL---SKHTLCGRLSGGQKKRLSIALE   68 (203)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~v~~~L~~~~L~~---~~~~~v~~LSgGqrqrl~iA~a   68 (203)
                      +-..+.||.....+++-+++.+-+              +.++++.++|+.+||.+   ..+.++.+|||||||||.||.|
T Consensus        88 ~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAma  167 (316)
T COG0444          88 KEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMA  167 (316)
T ss_pred             ceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHH
Confidence            345677888887788878877632              12346888999999975   5699999999999999999999


Q ss_pred             HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCc
Q psy8397          69 LIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGR  147 (203)
Q Consensus        69 L~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  147 (203)
                      |+.+|++||.||||++||...+.+++++|++++++ |.|+|++|||+.                                
T Consensus       168 la~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~--------------------------------  215 (316)
T COG0444         168 LALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLG--------------------------------  215 (316)
T ss_pred             HhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--------------------------------
Confidence            99999999999999999999999999999999963 777777777753                                


Q ss_pred             eEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         148 TIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       148 tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                                 .+.++||||+||+.|+|++.|+.++++
T Consensus       216 -----------vva~~aDri~VMYaG~iVE~g~~~~i~  242 (316)
T COG0444         216 -----------VVAEIADRVAVMYAGRIVEEGPVEEIF  242 (316)
T ss_pred             -----------HHHHhcceEEEEECcEEEEeCCHHHHh
Confidence                       478999999999999999999999886

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=99.95  E-value=1.9e-27  Score=214.15  Aligned_cols=135  Identities=24%  Similarity=0.346  Sum_probs=116.8

Q ss_pred             CceeEEEeeecccccCCCCHhHHHhH----------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHH
Q psy8397           6 HGTIWCWQIISAQYSHRISVDDILDT----------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALEL   69 (203)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL   69 (203)
                      ....++||..  .+++.+|+.|++..                .+++.++++.++|.+..++++.+|||||||||+|||||
T Consensus        74 r~i~~v~Q~~--~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL  151 (353)
T PRK10851         74 RKVGFVFQHY--ALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARAL  151 (353)
T ss_pred             CCEEEEecCc--ccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHH
Confidence            3567788753  35566888887642                24678899999999999999999999999999999999


Q ss_pred             hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCce
Q psy8397          70 IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRT  148 (203)
Q Consensus        70 ~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t  148 (203)
                      +.+|++|||||||+|||+.++..+.+.|+++.++ |.|+|++||+++                                 
T Consensus       152 ~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~---------------------------------  198 (353)
T PRK10851        152 AVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQE---------------------------------  198 (353)
T ss_pred             hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH---------------------------------
Confidence            9999999999999999999999999999999865 778888888764                                 


Q ss_pred             EEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         149 IVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       149 vi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                                ++..+||++++|++|+++..|+++++.
T Consensus       199 ----------ea~~~~Dri~vl~~G~i~~~g~~~~i~  225 (353)
T PRK10851        199 ----------EAMEVADRVVVMSQGNIEQAGTPDQVW  225 (353)
T ss_pred             ----------HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence                      468899999999999999999988764

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=99.95  E-value=2.4e-27  Score=211.48  Aligned_cols=136  Identities=25%  Similarity=0.374  Sum_probs=115.9

Q ss_pred             ceeEEEeeecccccCCCCHhHHHh-------------HHHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhcC
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILD-------------TIGLVDDILDTIGLV-LSKHTLCGRLSGGQKKRLSIALELIDN   72 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~v~~~L~~~~L~-~~~~~~v~~LSgGqrqrl~iA~aL~~~   72 (203)
                      ...+.||.....+++.+++.+++.             .++++.++++.+||. ...++++.+||||||||++||+||+.+
T Consensus        93 ~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~  172 (327)
T PRK11308         93 KIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLD  172 (327)
T ss_pred             CEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcC
Confidence            467888876545667778876542             235688999999996 467999999999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEE
Q psy8397          73 PPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVC  151 (203)
Q Consensus        73 P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~  151 (203)
                      |++||+||||+|||+.++..+++.|++++++ |.|+|++||++.                                    
T Consensus       173 P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~------------------------------------  216 (327)
T PRK11308        173 PDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLS------------------------------------  216 (327)
T ss_pred             CCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH------------------------------------
Confidence            9999999999999999999999999999864 777888777753                                    


Q ss_pred             eecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         152 TIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       152 ~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                             .+..+||++++|++|++++.|++++++
T Consensus       217 -------~~~~~adrv~vm~~G~ive~g~~~~~~  243 (327)
T PRK11308        217 -------VVEHIADEVMVMYLGRCVEKGTKEQIF  243 (327)
T ss_pred             -------HHHHhCCEEEEEECCEEEEECCHHHHh
Confidence                   367799999999999999999987765

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=99.95  E-value=2.6e-27  Score=199.98  Aligned_cols=134  Identities=28%  Similarity=0.431  Sum_probs=112.5

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH--------------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHH
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT--------------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIA   66 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA   66 (203)
                      ...+.+|..  .++..+|+.+++..                    .+++.++++.+++.+..++++.+||||||||++||
T Consensus        79 ~i~~~~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la  156 (241)
T cd03256          79 QIGMIFQQF--NLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIA  156 (241)
T ss_pred             ccEEEcccC--cccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHH
Confidence            455666543  24456788876531                    23567889999999889999999999999999999


Q ss_pred             HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhC
Q psy8397          67 LELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARG  145 (203)
Q Consensus        67 ~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (203)
                      +||+.+|++|||||||+|||+.++..+++.|+++.++ |+|||++||+++                              
T Consensus       157 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~------------------------------  206 (241)
T cd03256         157 RALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVD------------------------------  206 (241)
T ss_pred             HHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH------------------------------
Confidence            9999999999999999999999999999999999754 788888888764                              


Q ss_pred             CceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         146 GRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       146 g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                                   .+..+||++++|++|++++.|+++++.
T Consensus       207 -------------~~~~~~d~v~~l~~G~i~~~~~~~~~~  233 (241)
T cd03256         207 -------------LAREYADRIVGLKDGRIVFDGPPAELT  233 (241)
T ss_pred             -------------HHHHhCCEEEEEECCEEEeecCHHHhh
Confidence                         367799999999999999999887753

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=99.95  E-value=2e-27  Score=215.85  Aligned_cols=135  Identities=25%  Similarity=0.325  Sum_probs=117.6

Q ss_pred             CceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCC
Q psy8397           6 HGTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNP   73 (203)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P   73 (203)
                      .+..++||..  .+++.+||.|++..            .+++.++++.+||.+..++++.+|||||||||+|||||+.+|
T Consensus        86 r~ig~vfQ~~--~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P  163 (375)
T PRK09452         86 RHVNTVFQSY--ALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKP  163 (375)
T ss_pred             CCEEEEecCc--ccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence            4567788754  35677899997642            346788999999999999999999999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEe
Q psy8397          74 PIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCT  152 (203)
Q Consensus        74 ~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~  152 (203)
                      ++|||||||+|||+..+..+++.|+++.++ |.|+|++||+++                                     
T Consensus       164 ~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~-------------------------------------  206 (375)
T PRK09452        164 KVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQE-------------------------------------  206 (375)
T ss_pred             CEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-------------------------------------
Confidence            999999999999999999999999999864 788888888754                                     


Q ss_pred             ecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         153 IHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       153 ~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                            ++..++|++++|++|+++..|+++++.
T Consensus       207 ------ea~~laDri~vl~~G~i~~~g~~~~i~  233 (375)
T PRK09452        207 ------EALTMSDRIVVMRDGRIEQDGTPREIY  233 (375)
T ss_pred             ------HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence                  467899999999999999999988764

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.95  E-value=1.7e-27  Score=204.06  Aligned_cols=136  Identities=25%  Similarity=0.411  Sum_probs=119.7

Q ss_pred             CCceeEEEeeecccccCCCCHhHHHhH------------------------HHHHHHHHHHcCCcccccccCCCCCHHHH
Q psy8397           5 NHGTIWCWQIISAQYSHRISVDDILDT------------------------IGLVDDILDTIGLVLSKHTLCGRLSGGQK   60 (203)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqr   60 (203)
                      ..|..+.||+..  .++.+||-|+...                        .+++.++|+.+||.+.++++.++||+|||
T Consensus        78 r~Gi~RTFQ~~r--lF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~q  155 (250)
T COG0411          78 RLGIARTFQITR--LFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQ  155 (250)
T ss_pred             hccceeeccccc--ccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHh
Confidence            457899999764  5788999987532                        34678899999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHH
Q psy8397          61 KRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAML  139 (203)
Q Consensus        61 qrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (203)
                      ||+.|||||+.+|++|+||||++||.+....++.+.|++++++ |.||+++.|+|.                        
T Consensus       156 R~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~------------------------  211 (250)
T COG0411         156 RRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMK------------------------  211 (250)
T ss_pred             HHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccH------------------------
Confidence            9999999999999999999999999999999999999999963 466666666653                        


Q ss_pred             HHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         140 KALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       140 ~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                                         .+..+||||+||+.|+++++|+|+++.
T Consensus       212 -------------------~Vm~l~dri~Vl~~G~~IAeG~P~eV~  238 (250)
T COG0411         212 -------------------LVMGLADRIVVLNYGEVIAEGTPEEVR  238 (250)
T ss_pred             -------------------HHhhhccEEEeccCCcCcccCCHHHHh
Confidence                               588999999999999999999999886

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=99.95  E-value=2.8e-27  Score=198.01  Aligned_cols=133  Identities=27%  Similarity=0.437  Sum_probs=112.1

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCC
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP   74 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~   74 (203)
                      ...+++|..  .+.+.+|+.+++..            .+++.++++.+++.+..++++.+||||||||++||+||+.+|+
T Consensus        74 ~i~~~~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~  151 (220)
T cd03265          74 RIGIVFQDL--SVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPE  151 (220)
T ss_pred             cEEEecCCc--cccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence            355666643  34566788776532            2357889999999988999999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEee
Q psy8397          75 IMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTI  153 (203)
Q Consensus        75 vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~  153 (203)
                      ++||||||+|||+.++..+++.|+++.++ |.|||++||+++                                      
T Consensus       152 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~--------------------------------------  193 (220)
T cd03265         152 VLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYME--------------------------------------  193 (220)
T ss_pred             EEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--------------------------------------
Confidence            99999999999999999999999999865 778888888754                                      


Q ss_pred             cCchhHHHhhcCEEEEEeCCeEEeeCCcccc
Q psy8397         154 HQPSATIFEMVDHLYVIAEGHCVYKGSSANT  184 (203)
Q Consensus       154 h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~  184 (203)
                           .+..+||++++|.+|+++..|+++++
T Consensus       194 -----~~~~~~d~i~~l~~G~i~~~~~~~~~  219 (220)
T cd03265         194 -----EAEQLCDRVAIIDHGRIIAEGTPEEL  219 (220)
T ss_pred             -----HHHHhCCEEEEEeCCEEEEeCChHHc
Confidence                 36788999999999999998887653

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=99.95  E-value=2.9e-27  Score=210.69  Aligned_cols=136  Identities=22%  Similarity=0.302  Sum_probs=114.2

Q ss_pred             ceeEEEeeecccccCCCCHhHHH-------------hHHHHHHHHHHHcCCcc---cccccCCCCCHHHHHHHHHHHHHh
Q psy8397           7 GTIWCWQIISAQYSHRISVDDIL-------------DTIGLVDDILDTIGLVL---SKHTLCGRLSGGQKKRLSIALELI   70 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~v~~~L~~~~L~~---~~~~~v~~LSgGqrqrl~iA~aL~   70 (203)
                      ...+.||.....+++.+++.+.+             +..+++.++++.+||.+   ..++++.+|||||||||+||+||+
T Consensus        90 ~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~  169 (326)
T PRK11022         90 EVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIA  169 (326)
T ss_pred             CEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHH
Confidence            46778876654466667776432             12356789999999964   568999999999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceE
Q psy8397          71 DNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTI  149 (203)
Q Consensus        71 ~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tv  149 (203)
                      .+|++||+||||+|||+.++..+++.|++++++ |.|+|++||+++                                  
T Consensus       170 ~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~----------------------------------  215 (326)
T PRK11022        170 CRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLA----------------------------------  215 (326)
T ss_pred             hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH----------------------------------
Confidence            999999999999999999999999999999863 778888888764                                  


Q ss_pred             EEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         150 VCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       150 i~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                               .+..+||+|++|++|++++.|++++++
T Consensus       216 ---------~~~~~adri~vm~~G~ive~g~~~~~~  242 (326)
T PRK11022        216 ---------LVAEAAHKIIVMYAGQVVETGKAHDIF  242 (326)
T ss_pred             ---------HHHHhCCEEEEEECCEEEEECCHHHHh
Confidence                     367899999999999999999988775

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.95  E-value=3.7e-27  Score=205.13  Aligned_cols=145  Identities=25%  Similarity=0.341  Sum_probs=117.6

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCC
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP   74 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~   74 (203)
                      ...+.+|..... ....|+.|++..            .+++.++++.+||.+..++++.+||||||||++||+||+.+|+
T Consensus        82 ~i~~v~q~~~~~-~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~  160 (279)
T PRK13650         82 KIGMVFQNPDNQ-FVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPK  160 (279)
T ss_pred             hceEEEcChHHh-cccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence            456777754322 345688876532            3467889999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEee
Q psy8397          75 IMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTI  153 (203)
Q Consensus        75 vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~  153 (203)
                      +|||||||+|||+.++..+++.|++++++ |+|||++||+++                                      
T Consensus       161 lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~--------------------------------------  202 (279)
T PRK13650        161 IIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLD--------------------------------------  202 (279)
T ss_pred             EEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH--------------------------------------
Confidence            99999999999999999999999999864 788888888753                                      


Q ss_pred             cCchhHHHhhcCEEEEEeCCeEEeeCCcccchh---HHHhcCCCCC
Q psy8397         154 HQPSATIFEMVDHLYVIAEGHCVYKGSSANTIP---YLQTIGLHCP  196 (203)
Q Consensus       154 h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~~---~~~~~g~~~p  196 (203)
                           .+ ..||++++|++|+++..|+++++..   .++..|+..|
T Consensus       203 -----~~-~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~  242 (279)
T PRK13650        203 -----EV-ALSDRVLVMKNGQVESTSTPRELFSRGNDLLQLGLDIP  242 (279)
T ss_pred             -----HH-HhCCEEEEEECCEEEEECCHHHHHcChHHHHHcCCCCc
Confidence                 24 4799999999999999999887652   3444455433

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.95  E-value=4.7e-27  Score=204.85  Aligned_cols=146  Identities=28%  Similarity=0.396  Sum_probs=118.8

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCC
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP   74 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~   74 (203)
                      ...|.+|.....+ ...|+.|++..            .+++.++++.+||....++++.+||||||||++|||||+.+|+
T Consensus        83 ~ig~v~q~~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~  161 (283)
T PRK13636         83 SVGMVFQDPDNQL-FSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPK  161 (283)
T ss_pred             hEEEEecCcchhh-ccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence            4567777543222 34678776532            3467888999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEee
Q psy8397          75 IMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTI  153 (203)
Q Consensus        75 vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~  153 (203)
                      +|||||||+|||+.++..+++.|+++.++ |.|||++||+++                                      
T Consensus       162 lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~--------------------------------------  203 (283)
T PRK13636        162 VLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDID--------------------------------------  203 (283)
T ss_pred             EEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH--------------------------------------
Confidence            99999999999999999999999999865 778888888764                                      


Q ss_pred             cCchhHHHhhcCEEEEEeCCeEEeeCCcccchh---HHHhcCCCCC
Q psy8397         154 HQPSATIFEMVDHLYVIAEGHCVYKGSSANTIP---YLQTIGLHCP  196 (203)
Q Consensus       154 h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~~---~~~~~g~~~p  196 (203)
                           .+..+||++++|++|++++.|+++++..   .+...++..|
T Consensus       204 -----~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~  244 (283)
T PRK13636        204 -----IVPLYCDNVFVMKEGRVILQGNPKEVFAEKEMLRKVNLRLP  244 (283)
T ss_pred             -----HHHHhCCEEEEEECCEEEEeCCHHHHhcCHHHHHHcCCCCC
Confidence                 3667899999999999999999987653   2334455444

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=99.95  E-value=3.5e-27  Score=196.33  Aligned_cols=128  Identities=27%  Similarity=0.400  Sum_probs=107.0

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCC
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP   74 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~   74 (203)
                      ...+.+|..  .++..+|+.|++..            .+++.++++.+++.+..++++.+||||||||++|||||+.+|+
T Consensus        73 ~i~~v~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~  150 (213)
T cd03259          73 NIGMVFQDY--ALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPS  150 (213)
T ss_pred             cEEEEcCch--hhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCC
Confidence            355666543  24456788776532            2356789999999988999999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEee
Q psy8397          75 IMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTI  153 (203)
Q Consensus        75 vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~  153 (203)
                      +|||||||+|||+.++..+++.|++++++ |+|||++||+++                                      
T Consensus       151 ~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~--------------------------------------  192 (213)
T cd03259         151 LLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQE--------------------------------------  192 (213)
T ss_pred             EEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH--------------------------------------
Confidence            99999999999999999999999999763 788888888753                                      


Q ss_pred             cCchhHHHhhcCEEEEEeCCeEEeeC
Q psy8397         154 HQPSATIFEMVDHLYVIAEGHCVYKG  179 (203)
Q Consensus       154 h~~~~~i~~~~d~v~vl~~G~i~~~g  179 (203)
                           .+.++||++++|++|++++.|
T Consensus       193 -----~~~~~~d~v~~l~~G~i~~~g  213 (213)
T cd03259         193 -----EALALADRIAVMNEGRIVQVG  213 (213)
T ss_pred             -----HHHHhcCEEEEEECCEEEecC
Confidence                 367899999999999998765

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.95  E-value=4e-27  Score=205.56  Aligned_cols=136  Identities=26%  Similarity=0.352  Sum_probs=113.4

Q ss_pred             CceeEEEeeecccccCCCCHhHHHh------------HHHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhcC
Q psy8397           6 HGTIWCWQIISAQYSHRISVDDILD------------TIGLVDDILDTIGLV-LSKHTLCGRLSGGQKKRLSIALELIDN   72 (203)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~v~~~L~~~~L~-~~~~~~v~~LSgGqrqrl~iA~aL~~~   72 (203)
                      ....++||.....++. .|+.|++.            ..+++.++++.+||. +..++++.+||||||||++|||||+.+
T Consensus        85 ~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~  163 (286)
T PRK13646         85 KRIGMVFQFPESQLFE-DTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMN  163 (286)
T ss_pred             hheEEEecChHhccch-hhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhC
Confidence            3567888764333333 37776553            234678899999997 688999999999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEE
Q psy8397          73 PPIMFLDEPTTGLDSNSTNQCVAMLKALAR-GGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVC  151 (203)
Q Consensus        73 P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~-~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~  151 (203)
                      |++|||||||+|||+.++..+++.|+++++ .|+|||++||+++                                    
T Consensus       164 p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~------------------------------------  207 (286)
T PRK13646        164 PDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN------------------------------------  207 (286)
T ss_pred             CCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH------------------------------------
Confidence            999999999999999999999999999975 3788888888754                                    


Q ss_pred             eecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         152 TIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       152 ~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                             .+..+||++++|++|++++.|+++++.
T Consensus       208 -------~~~~~~dri~~l~~G~i~~~g~~~~~~  234 (286)
T PRK13646        208 -------EVARYADEVIVMKEGSIVSQTSPKELF  234 (286)
T ss_pred             -------HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence                   367889999999999999999988765

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=99.95  E-value=2.8e-27  Score=214.03  Aligned_cols=134  Identities=23%  Similarity=0.367  Sum_probs=115.6

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCC
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP   74 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~   74 (203)
                      ...+.+|..  .+++.+|+.|++..            .+++.++++.+||.+..++++.+|||||||||+|||||+.+|+
T Consensus        76 ~i~~v~Q~~--~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~  153 (369)
T PRK11000         76 GVGMVFQSY--ALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPS  153 (369)
T ss_pred             CEEEEeCCc--ccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence            456777653  34567899887642            3467889999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEee
Q psy8397          75 IMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTI  153 (203)
Q Consensus        75 vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~  153 (203)
                      +|||||||+|||+.++..+++.|+++.++ |.|+|++||+++                                      
T Consensus       154 lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~--------------------------------------  195 (369)
T PRK11000        154 VFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV--------------------------------------  195 (369)
T ss_pred             EEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH--------------------------------------
Confidence            99999999999999999999999998764 778888888754                                      


Q ss_pred             cCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         154 HQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       154 h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                           ++..+||++++|++|+++..|+++++.
T Consensus       196 -----~~~~~~d~i~vl~~G~i~~~g~~~~i~  222 (369)
T PRK11000        196 -----EAMTLADKIVVLDAGRVAQVGKPLELY  222 (369)
T ss_pred             -----HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence                 467899999999999999999988764

>PLN03140 ABC transporter G family member; Provisional

Probab=99.95  E-value=4.4e-27  Score=242.18  Aligned_cols=153  Identities=37%  Similarity=0.611  Sum_probs=130.5

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH---------------HHHHHHHHHHcCCcccccccC-----CCCCHHHHHHHHHH
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT---------------IGLVDDILDTIGLVLSKHTLC-----GRLSGGQKKRLSIA   66 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~v~~~L~~~~L~~~~~~~v-----~~LSgGqrqrl~iA   66 (203)
                      .+.|++|..  .+.+.+||.|.+..               .++++++++.+||.+..|+++     +.|||||||||+||
T Consensus       954 ~igyv~Q~d--~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa 1031 (1470)
T PLN03140        954 ISGYCEQND--IHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIA 1031 (1470)
T ss_pred             heEEEcccc--ccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHH
Confidence            356777642  34567899987642               234788999999999999987     48999999999999


Q ss_pred             HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCC
Q psy8397          67 LELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGG  146 (203)
Q Consensus        67 ~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  146 (203)
                      ++|+.+|++|||||||+|||+.++..+++.|++++++|+|||+++|+++.                              
T Consensus      1032 ~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~------------------------------ 1081 (1470)
T PLN03140       1032 VELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI------------------------------ 1081 (1470)
T ss_pred             HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCH------------------------------
Confidence            99999999999999999999999999999999998778888888888752                              


Q ss_pred             ceEEEeecCchhHHHhhcCEEEEEeC-CeEEeeCCc----ccchhHHHhc-CC-CCCCCCCCCC
Q psy8397         147 RTIVCTIHQPSATIFEMVDHLYVIAE-GHCVYKGSS----ANTIPYLQTI-GL-HCPQYHNPAD  203 (203)
Q Consensus       147 ~tvi~~~h~~~~~i~~~~d~v~vl~~-G~i~~~g~~----~~~~~~~~~~-g~-~~p~~~~~~d  203 (203)
                                  .+.+.||++++|++ |++++.|++    +++++||+.+ |. .||+..||||
T Consensus      1082 ------------~i~~~~D~vllL~~gG~~v~~G~~~~~~~~~~~yF~~~~g~~~~p~~~NPAd 1133 (1470)
T PLN03140       1082 ------------DIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPAT 1133 (1470)
T ss_pred             ------------HHHHhCCEEEEEcCCCEEEEECCcccccccHHHHHHhcCCCCCCCCCCCchh
Confidence                        36788999999996 899999996    5788999997 55 5999999997

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=99.95  E-value=2.4e-27  Score=208.44  Aligned_cols=134  Identities=25%  Similarity=0.399  Sum_probs=116.0

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCC
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP   74 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~   74 (203)
                      ...|++|..  .++..+|+.|++..            .++++++++.+||.+..+++++.||||||||++||+||+++|+
T Consensus        76 ~ig~~~q~~--~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~  153 (301)
T TIGR03522        76 NIGYLPEHN--PLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPK  153 (301)
T ss_pred             ceEEecCCC--CCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCC
Confidence            456666643  35677899997642            3467889999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeec
Q psy8397          75 IMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIH  154 (203)
Q Consensus        75 vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h  154 (203)
                      +|||||||+|||+.+++.+++.|+++++ +.|||++||+++                                       
T Consensus       154 lliLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l~---------------------------------------  193 (301)
T TIGR03522       154 VLILDEPTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIMQ---------------------------------------  193 (301)
T ss_pred             EEEEcCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH---------------------------------------
Confidence            9999999999999999999999999864 688888888864                                       


Q ss_pred             CchhHHHhhcCEEEEEeCCeEEeeCCcccchh
Q psy8397         155 QPSATIFEMVDHLYVIAEGHCVYKGSSANTIP  186 (203)
Q Consensus       155 ~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~~  186 (203)
                          ++.++||++++|++|++++.|+++++..
T Consensus       194 ----~~~~~~d~i~~l~~G~i~~~g~~~~~~~  221 (301)
T TIGR03522       194 ----EVEAICDRVIIINKGKIVADKKLDELSA  221 (301)
T ss_pred             ----HHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence                3788999999999999999999987643

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=99.95  E-value=3.8e-27  Score=199.70  Aligned_cols=134  Identities=23%  Similarity=0.334  Sum_probs=112.2

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH----------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHh
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT----------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELI   70 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~   70 (203)
                      ...+.+|..  .++..+|+.|++..                .+++.++++.+|+.+..++++.+||||||||++||+||+
T Consensus        75 ~i~~v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~  152 (239)
T cd03296          75 NVGFVFQHY--ALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALA  152 (239)
T ss_pred             ceEEEecCC--cccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHh
Confidence            455666542  34456788876532                234678899999998899999999999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceE
Q psy8397          71 DNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTI  149 (203)
Q Consensus        71 ~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tv  149 (203)
                      .+|++|||||||+|||+.+++.+++.|++++++ |+|||++||+++                                  
T Consensus       153 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~----------------------------------  198 (239)
T cd03296         153 VEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQE----------------------------------  198 (239)
T ss_pred             cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH----------------------------------
Confidence            999999999999999999999999999999864 778888888753                                  


Q ss_pred             EEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         150 VCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       150 i~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                               .+..+||++++|++|++++.|+++++.
T Consensus       199 ---------~~~~~~d~i~~l~~G~i~~~~~~~~~~  225 (239)
T cd03296         199 ---------EALEVADRVVVMNKGRIEQVGTPDEVY  225 (239)
T ss_pred             ---------HHHHhCCEEEEEECCeEEEecCHHHHh
Confidence                     367889999999999999999887653

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.95  E-value=1e-27  Score=204.86  Aligned_cols=134  Identities=25%  Similarity=0.418  Sum_probs=113.2

Q ss_pred             eeEEEeeecccccCCCCHhHHHh--------------------HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHH
Q psy8397           8 TIWCWQIISAQYSHRISVDDILD--------------------TIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIAL   67 (203)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~   67 (203)
                      +.+-||.+.  +-+++||-++..                    .+..+-++|+.+|+.+++.+++++|||||+|||+|||
T Consensus        83 iGmIfQ~~n--Lv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIAR  160 (258)
T COG3638          83 IGMIFQQFN--LVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIAR  160 (258)
T ss_pred             ceeEeccCC--cccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHH
Confidence            445565444  457788877652                    3556788999999999999999999999999999999


Q ss_pred             HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCC
Q psy8397          68 ELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGG  146 (203)
Q Consensus        68 aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  146 (203)
                      ||+++|+++|-|||+++|||.+.+.+++.|++++++ |.|||++.|++                                
T Consensus       161 aL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~v--------------------------------  208 (258)
T COG3638         161 ALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQV--------------------------------  208 (258)
T ss_pred             HHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechH--------------------------------
Confidence            999999999999999999999999999999999853 55555555554                                


Q ss_pred             ceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccchh
Q psy8397         147 RTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTIP  186 (203)
Q Consensus       147 ~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~~  186 (203)
                                + .+.++|||++-|++|+|+++|++.++-.
T Consensus       209 ----------d-lA~~Y~~Riigl~~G~ivfDg~~~el~~  237 (258)
T COG3638         209 ----------D-LAKKYADRIIGLKAGRIVFDGPASELTD  237 (258)
T ss_pred             ----------H-HHHHHHhhheEecCCcEEEeCChhhhhH
Confidence                      4 4789999999999999999999988753

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=99.95  E-value=3.5e-27  Score=211.39  Aligned_cols=134  Identities=29%  Similarity=0.415  Sum_probs=114.1

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCC
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP   74 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~   74 (203)
                      ...+.+|...  ++..+|+.|++..            .+++.++++.+||.+..++++.+||||||||++|||||+++|+
T Consensus        83 ~ig~v~q~~~--l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~  160 (343)
T PRK11153         83 QIGMIFQHFN--LLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPK  160 (343)
T ss_pred             CEEEEeCCCc--cCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCC
Confidence            4566676433  4566888887542            2467789999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEee
Q psy8397          75 IMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTI  153 (203)
Q Consensus        75 vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~  153 (203)
                      +|||||||+|||+.++..+++.|++++++ |+|||++||+++                                      
T Consensus       161 iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~--------------------------------------  202 (343)
T PRK11153        161 VLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMD--------------------------------------  202 (343)
T ss_pred             EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--------------------------------------
Confidence            99999999999999999999999999764 778888888753                                      


Q ss_pred             cCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         154 HQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       154 h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                           .+.++||++++|++|++++.|+++++.
T Consensus       203 -----~i~~~~d~v~~l~~G~i~~~g~~~~~~  229 (343)
T PRK11153        203 -----VVKRICDRVAVIDAGRLVEQGTVSEVF  229 (343)
T ss_pred             -----HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence                 467899999999999999999887664

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=99.95  E-value=4.2e-27  Score=197.93  Aligned_cols=134  Identities=23%  Similarity=0.418  Sum_probs=114.0

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCC
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP   74 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~   74 (203)
                      +..+.+|..  .++..+|+.|++..            .+++.++++.+++.+..++++.+||||||||++||+||+.+|+
T Consensus        76 ~i~~~~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~  153 (232)
T cd03218          76 GIGYLPQEA--SIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPK  153 (232)
T ss_pred             cEEEecCCc--cccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence            456677643  34566788876532            2356788999999988999999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeec
Q psy8397          75 IMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIH  154 (203)
Q Consensus        75 vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h  154 (203)
                      +|||||||+|||+.++..+++.|+++.++|.|||++||+++                                       
T Consensus       154 llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~---------------------------------------  194 (232)
T cd03218         154 FLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVR---------------------------------------  194 (232)
T ss_pred             EEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH---------------------------------------
Confidence            99999999999999999999999999867788888888764                                       


Q ss_pred             CchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         155 QPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       155 ~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                          .+..+||++++|++|+++..|+++++.
T Consensus       195 ----~~~~~~d~i~~l~~G~i~~~~~~~~~~  221 (232)
T cd03218         195 ----ETLSITDRAYIIYEGKVLAEGTPEEIA  221 (232)
T ss_pred             ----HHHHhCCEEEEEECCeEEEEeCHHHhh
Confidence                367899999999999999999887654

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=99.95  E-value=3.8e-27  Score=196.50  Aligned_cols=124  Identities=23%  Similarity=0.371  Sum_probs=105.0

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCC
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP   74 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~   74 (203)
                      ...|.+|..  .++..+|+.|++..            .+++.++++.+|+.+..++++.+||||||||++|||||+.+|+
T Consensus        81 ~i~~~~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~  158 (216)
T TIGR00960        81 HIGMVFQDH--RLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPP  158 (216)
T ss_pred             hceEEecCc--cccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence            355666643  34556788887542            3467889999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeec
Q psy8397          75 IMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIH  154 (203)
Q Consensus        75 vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h  154 (203)
                      +|||||||+|||+.++..+++.|++++++|.|||++||+++                                       
T Consensus       159 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~---------------------------------------  199 (216)
T TIGR00960       159 LLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDIN---------------------------------------  199 (216)
T ss_pred             EEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH---------------------------------------
Confidence            99999999999999999999999999766788888888764                                       


Q ss_pred             CchhHHHhhcCEEEEEeCCeE
Q psy8397         155 QPSATIFEMVDHLYVIAEGHC  175 (203)
Q Consensus       155 ~~~~~i~~~~d~v~vl~~G~i  175 (203)
                          .+..+||++++|++|++
T Consensus       200 ----~~~~~~d~i~~l~~G~i  216 (216)
T TIGR00960       200 ----LVETYRHRTLTLSRGRL  216 (216)
T ss_pred             ----HHHHhCCEEEEEeCCcC
Confidence                36778999999999974

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=99.95  E-value=4.1e-27  Score=196.32  Aligned_cols=128  Identities=25%  Similarity=0.459  Sum_probs=109.2

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCC
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP   74 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~   74 (203)
                      ...|++|..  .++..+|+.|++..            .+++.++++.+|+.+..++++++||||||||++|||||+.+|+
T Consensus        79 ~i~~~~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~  156 (218)
T cd03266          79 RLGFVSDST--GLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPP  156 (218)
T ss_pred             hEEEecCCc--ccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCC
Confidence            456667653  35566888887532            3467789999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeec
Q psy8397          75 IMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIH  154 (203)
Q Consensus        75 vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h  154 (203)
                      +|+|||||+|||+.++..+++.|+++.++|.|||++||+++                                       
T Consensus       157 illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~---------------------------------------  197 (218)
T cd03266         157 VLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQ---------------------------------------  197 (218)
T ss_pred             EEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH---------------------------------------
Confidence            99999999999999999999999999866888888888853                                       


Q ss_pred             CchhHHHhhcCEEEEEeCCeEEeeC
Q psy8397         155 QPSATIFEMVDHLYVIAEGHCVYKG  179 (203)
Q Consensus       155 ~~~~~i~~~~d~v~vl~~G~i~~~g  179 (203)
                          .+..+||++++|++|++++.|
T Consensus       198 ----~~~~~~d~i~~l~~G~i~~~~  218 (218)
T cd03266         198 ----EVERLCDRVVVLHRGRVVYEG  218 (218)
T ss_pred             ----HHHHhcCEEEEEECCEEeecC
Confidence                367889999999999998654

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.95  E-value=1.9e-27  Score=244.22  Aligned_cols=152  Identities=28%  Similarity=0.425  Sum_probs=129.2

Q ss_pred             eeEEEeeecccccCCCCHhHHHhHH-------------------HH-HHHHHHHcCCcccccccC-----CCCCHHHHHH
Q psy8397           8 TIWCWQIISAQYSHRISVDDILDTI-------------------GL-VDDILDTIGLVLSKHTLC-----GRLSGGQKKR   62 (203)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~-v~~~L~~~~L~~~~~~~v-----~~LSgGqrqr   62 (203)
                      ..+++|.  ..+.+.+||.|.+...                   ++ ++++++.+||.+.+++++     +.||||||||
T Consensus       140 i~yv~Q~--d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkR  217 (1394)
T TIGR00956       140 VVYNAET--DVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKR  217 (1394)
T ss_pred             eEEeccc--cccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchH
Confidence            4566653  2345668998876421                   12 356799999998888776     5699999999


Q ss_pred             HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHH
Q psy8397          63 LSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKA  141 (203)
Q Consensus        63 l~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (203)
                      |+||++|+.+|++++|||||+|||+.++..+++.|++++++ |+|||+++|++.                          
T Consensus       218 vsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~--------------------------  271 (1394)
T TIGR00956       218 VSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCS--------------------------  271 (1394)
T ss_pred             HHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCC--------------------------
Confidence            99999999999999999999999999999999999999864 777777777764                          


Q ss_pred             hhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccchhHHHhcCCCCCCCCCCCC
Q psy8397         142 LARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTIPYLQTIGLHCPQYHNPAD  203 (203)
Q Consensus       142 ~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~~~~~~~g~~~p~~~~~~d  203 (203)
                                      ..+.+++|++++|++|++++.|+++++.+||+++|+.||+..||||
T Consensus       272 ----------------~~i~~l~D~v~~L~~G~iv~~G~~~~~~~yF~~lG~~~p~~~n~aD  317 (1394)
T TIGR00956       272 ----------------QDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPDRQTTAD  317 (1394)
T ss_pred             ----------------HHHHHhhceEEEEeCCeEEEECCHHHHHHHHHHcCCCCCCCCChHH
Confidence                            2578899999999999999999999999999999999999999987

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=99.95  E-value=3.5e-27  Score=216.03  Aligned_cols=134  Identities=25%  Similarity=0.408  Sum_probs=115.4

Q ss_pred             ceeEEEeeecccccCCCCHhHHHh----------------HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHh
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILD----------------TIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELI   70 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~   70 (203)
                      ...+.+|..  .++..+|+.|++.                ..++++++++.+|+.+..++++.+||||||||++|||||+
T Consensus        78 ~ig~v~q~~--~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~  155 (402)
T PRK09536         78 RVASVPQDT--SLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALA  155 (402)
T ss_pred             ceEEEccCC--CCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHH
Confidence            455666543  3445678877652                2346889999999999999999999999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEE
Q psy8397          71 DNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIV  150 (203)
Q Consensus        71 ~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi  150 (203)
                      ++|++|||||||+|||+.++.+++++|++++++|.|||++||+++                                   
T Consensus       156 ~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~-----------------------------------  200 (402)
T PRK09536        156 QATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLD-----------------------------------  200 (402)
T ss_pred             cCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-----------------------------------
Confidence            999999999999999999999999999999877888888888864                                   


Q ss_pred             EeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         151 CTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       151 ~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                              .+.++||++++|++|++++.|++++++
T Consensus       201 --------~~~~~adrii~l~~G~iv~~G~~~ev~  227 (402)
T PRK09536        201 --------LAARYCDELVLLADGRVRAAGPPADVL  227 (402)
T ss_pred             --------HHHHhCCEEEEEECCEEEEecCHHHHh
Confidence                    467899999999999999999998764

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=99.95  E-value=3.9e-27  Score=199.37  Aligned_cols=133  Identities=24%  Similarity=0.376  Sum_probs=111.5

Q ss_pred             eeEEEeeecccccCCCCHhHHHh--------------------HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHH
Q psy8397           8 TIWCWQIISAQYSHRISVDDILD--------------------TIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIAL   67 (203)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~   67 (203)
                      ..+.+|..  .+++.+|+.+++.                    ..+++.++++.+|+....++++.+||||||||++||+
T Consensus        81 i~~v~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~  158 (243)
T TIGR02315        81 IGMIFQHY--NLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIAR  158 (243)
T ss_pred             eEEEcCCC--cccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHH
Confidence            45566542  2445578777652                    1346788899999998899999999999999999999


Q ss_pred             HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCC
Q psy8397          68 ELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGG  146 (203)
Q Consensus        68 aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  146 (203)
                      ||+.+|++|||||||+|||+.++..+.+.|+++.++ |+|||++||+++                               
T Consensus       159 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~-------------------------------  207 (243)
T TIGR02315       159 ALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVD-------------------------------  207 (243)
T ss_pred             HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-------------------------------
Confidence            999999999999999999999999999999998754 778888888764                               


Q ss_pred             ceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         147 RTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       147 ~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                                  .+.++||++++|++|++++.|+++++.
T Consensus       208 ------------~~~~~~d~v~~l~~G~i~~~~~~~~~~  234 (243)
T TIGR02315       208 ------------LAKKYADRIVGLKAGEIVFDGAPSELD  234 (243)
T ss_pred             ------------HHHHhcCeEEEEECCEEEecCCHHHhC
Confidence                        367899999999999999999887753

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=99.95  E-value=5.6e-27  Score=202.88  Aligned_cols=134  Identities=22%  Similarity=0.297  Sum_probs=113.8

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCC
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP   74 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~   74 (203)
                      ...|.+|..  .++..+|+.|++..            .+++.++++.+||.+..++++.+||||||||++||+||+.+|+
T Consensus       103 ~i~~v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~  180 (269)
T cd03294         103 KISMVFQSF--ALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPD  180 (269)
T ss_pred             cEEEEecCc--ccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCC
Confidence            466777643  34556888887642            2457789999999988999999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEee
Q psy8397          75 IMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTI  153 (203)
Q Consensus        75 vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~  153 (203)
                      +|||||||+|||+.++..+++.|+++.++ |.|||++||+++                                      
T Consensus       181 illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~--------------------------------------  222 (269)
T cd03294         181 ILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLD--------------------------------------  222 (269)
T ss_pred             EEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--------------------------------------
Confidence            99999999999999999999999998754 778888888753                                      


Q ss_pred             cCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         154 HQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       154 h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                           .+..+||++++|++|++++.|+++++.
T Consensus       223 -----~~~~~~d~v~~l~~G~i~~~g~~~~~~  249 (269)
T cd03294         223 -----EALRLGDRIAIMKDGRLVQVGTPEEIL  249 (269)
T ss_pred             -----HHHHhcCEEEEEECCEEEEeCCHHHHH
Confidence                 367899999999999999999887764

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=99.95  E-value=3.7e-27  Score=214.15  Aligned_cols=135  Identities=20%  Similarity=0.316  Sum_probs=116.8

Q ss_pred             CceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCC
Q psy8397           6 HGTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNP   73 (203)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P   73 (203)
                      ....++||...  +++.+||.|++..            .+++.++++.++|.+..++++.+|||||||||+|||||+.+|
T Consensus        91 r~ig~vfQ~~~--lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P  168 (377)
T PRK11607         91 RPINMMFQSYA--LFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRP  168 (377)
T ss_pred             CCEEEEeCCCc--cCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence            35678887543  5677999998742            346788999999999999999999999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEe
Q psy8397          74 PIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCT  152 (203)
Q Consensus        74 ~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~  152 (203)
                      ++|||||||++||+..+..+.+.|+++.++ |.|+|++||+++                                     
T Consensus       169 ~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-------------------------------------  211 (377)
T PRK11607        169 KLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQE-------------------------------------  211 (377)
T ss_pred             CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-------------------------------------
Confidence            999999999999999999999999998754 777777777754                                     


Q ss_pred             ecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         153 IHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       153 ~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                            ++..+||++++|++|+++..|+++++.
T Consensus       212 ------ea~~laDri~vl~~G~i~~~g~~~~~~  238 (377)
T PRK11607        212 ------EAMTMAGRIAIMNRGKFVQIGEPEEIY  238 (377)
T ss_pred             ------HHHHhCCEEEEEeCCEEEEEcCHHHHH
Confidence                  467899999999999999999988764

>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit

Probab=99.95  E-value=5.1e-27  Score=208.83  Aligned_cols=134  Identities=24%  Similarity=0.325  Sum_probs=114.8

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCC
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP   74 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~   74 (203)
                      ...+.||..  .++..+|+.+++..            .+++.++++.++|.+..++++.+||||||||++|||||+.+|+
T Consensus        43 ~i~~v~q~~--~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~  120 (325)
T TIGR01187        43 HINMVFQSY--ALFPHMTVEENVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPK  120 (325)
T ss_pred             CEEEEecCc--cccCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCC
Confidence            456777653  34567899887642            2467889999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEee
Q psy8397          75 IMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTI  153 (203)
Q Consensus        75 vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~  153 (203)
                      +|||||||+|||+.++..+++.|+++.++ |.|+|++||+++                                      
T Consensus       121 lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd~~--------------------------------------  162 (325)
T TIGR01187       121 ILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQE--------------------------------------  162 (325)
T ss_pred             EEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--------------------------------------
Confidence            99999999999999999999999998764 778888888754                                      


Q ss_pred             cCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         154 HQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       154 h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                           ++..+||++++|++|+++..|+++++.
T Consensus       163 -----e~~~~~d~i~vl~~G~i~~~g~~~~~~  189 (325)
T TIGR01187       163 -----EAMTMSDRIAIMRKGKIAQIGTPEEIY  189 (325)
T ss_pred             -----HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence                 367899999999999999999988764

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.95  E-value=9.5e-27  Score=202.01  Aligned_cols=146  Identities=28%  Similarity=0.399  Sum_probs=120.0

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCC
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP   74 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~   74 (203)
                      ...|.+|.....++ ..|+.|++..            .+++.++++.+||.+..++++++|||||+||++|||||+.+|+
T Consensus        79 ~i~~v~q~~~~~~~-~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~  157 (275)
T PRK13639         79 TVGIVFQNPDDQLF-APTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPE  157 (275)
T ss_pred             heEEEeeChhhhhc-cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence            45677776432333 3588876532            2457789999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeec
Q psy8397          75 IMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIH  154 (203)
Q Consensus        75 vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h  154 (203)
                      +++|||||+|||+.++..+++.|+++.++|.|||++||+++                                       
T Consensus       158 llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~---------------------------------------  198 (275)
T PRK13639        158 IIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVD---------------------------------------  198 (275)
T ss_pred             EEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH---------------------------------------
Confidence            99999999999999999999999999866888888888864                                       


Q ss_pred             CchhHHHhhcCEEEEEeCCeEEeeCCcccchh---HHHhcCCCCC
Q psy8397         155 QPSATIFEMVDHLYVIAEGHCVYKGSSANTIP---YLQTIGLHCP  196 (203)
Q Consensus       155 ~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~~---~~~~~g~~~p  196 (203)
                          .+..+||++++|++|++++.|+++++..   .++..++..|
T Consensus       199 ----~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~  239 (275)
T PRK13639        199 ----LVPVYADKVYVMSDGKIIKEGTPKEVFSDIETIRKANLRLP  239 (275)
T ss_pred             ----HHHHhCCEEEEEECCEEEEeCCHHHHhcChHHHHhcCCCCC
Confidence                3677899999999999999999987653   3445555444

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.95  E-value=6.4e-27  Score=193.92  Aligned_cols=126  Identities=27%  Similarity=0.396  Sum_probs=105.6

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH--------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT--------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFL   78 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlL   78 (203)
                      ...|.+|.....+ ...|+.|++..        .+++.++++.+|+.+..++++++||||||||++|||||+.+|++|||
T Consensus        72 ~i~~~~q~~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llll  150 (205)
T cd03226          72 SIGYVMQDVDYQL-FTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIF  150 (205)
T ss_pred             ceEEEecChhhhh-hhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence            3556666532222 34688887642        23678899999999999999999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchh
Q psy8397          79 DEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSA  158 (203)
Q Consensus        79 DEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~  158 (203)
                      ||||+|||+.+++.+++.|++++++|.|||++||+++                                           
T Consensus       151 DEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~-------------------------------------------  187 (205)
T cd03226         151 DEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYE-------------------------------------------  187 (205)
T ss_pred             eCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-------------------------------------------
Confidence            9999999999999999999999867888888888864                                           


Q ss_pred             HHHhhcCEEEEEeCCeEE
Q psy8397         159 TIFEMVDHLYVIAEGHCV  176 (203)
Q Consensus       159 ~i~~~~d~v~vl~~G~i~  176 (203)
                      .+..+||++++|++|+++
T Consensus       188 ~~~~~~d~i~~l~~G~iv  205 (205)
T cd03226         188 FLAKVCDRVLLLANGAIV  205 (205)
T ss_pred             HHHHhCCEEEEEECCEEC
Confidence            367789999999999874

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.95  E-value=2.3e-27  Score=222.46  Aligned_cols=137  Identities=28%  Similarity=0.411  Sum_probs=120.4

Q ss_pred             CceeEEEeeecccccCCCCHhHHHh-------------HHHHHHHHHHHcCCcc-cccccCCCCCHHHHHHHHHHHHHhc
Q psy8397           6 HGTIWCWQIISAQYSHRISVDDILD-------------TIGLVDDILDTIGLVL-SKHTLCGRLSGGQKKRLSIALELID   71 (203)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~v~~~L~~~~L~~-~~~~~v~~LSgGqrqrl~iA~aL~~   71 (203)
                      ......||.+...+++++||.+++.             .++++.++++.+||.. ..++++.+||||||||++|||||+.
T Consensus       367 ~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~  446 (539)
T COG1123         367 RRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALAL  446 (539)
T ss_pred             hheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhc
Confidence            3456677877777899999999653             2457899999999986 7999999999999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEE
Q psy8397          72 NPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIV  150 (203)
Q Consensus        72 ~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi  150 (203)
                      +|++|++||||+.||+..+..+.+.|++++++ |.|.|++|||+.                                   
T Consensus       447 ~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~-----------------------------------  491 (539)
T COG1123         447 EPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLA-----------------------------------  491 (539)
T ss_pred             CCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-----------------------------------
Confidence            99999999999999999999999999999975 777777777753                                   


Q ss_pred             EeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         151 CTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       151 ~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                              .+..+||||.||++|+|+..|+.++++
T Consensus       492 --------vV~~i~drv~vm~~G~iVE~G~~~~v~  518 (539)
T COG1123         492 --------VVRYIADRVAVMYDGRIVEEGPTEKVF  518 (539)
T ss_pred             --------HHHhhCceEEEEECCeEEEeCCHHHHh
Confidence                    588999999999999999999887776

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.95  E-value=9.5e-27  Score=202.09  Aligned_cols=134  Identities=28%  Similarity=0.340  Sum_probs=112.1

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCC
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP   74 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~   74 (203)
                      ...+++|.....+ ...|+.+++..            .+++.++++.+||....++++.+||||||||++||+||+.+|+
T Consensus        78 ~i~~v~q~~~~~~-~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~  156 (274)
T PRK13644         78 LVGIVFQNPETQF-VGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPE  156 (274)
T ss_pred             heEEEEEChhhhc-ccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCC
Confidence            4566776543223 34677776532            3457888999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeec
Q psy8397          75 IMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIH  154 (203)
Q Consensus        75 vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h  154 (203)
                      +|||||||+|||+.++..+++.|++++++|.|||++||+++                                       
T Consensus       157 lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~---------------------------------------  197 (274)
T PRK13644        157 CLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLE---------------------------------------  197 (274)
T ss_pred             EEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH---------------------------------------
Confidence            99999999999999999999999999867888888888864                                       


Q ss_pred             CchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         155 QPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       155 ~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                          .+ ..||+++++++|++++.|+++++.
T Consensus       198 ----~~-~~~d~v~~l~~G~i~~~g~~~~~~  223 (274)
T PRK13644        198 ----EL-HDADRIIVMDRGKIVLEGEPENVL  223 (274)
T ss_pred             ----HH-hhCCEEEEEECCEEEEECCHHHHh
Confidence                24 469999999999999999987764

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=99.95  E-value=7.2e-27  Score=208.61  Aligned_cols=137  Identities=22%  Similarity=0.335  Sum_probs=114.8

Q ss_pred             CceeEEEeeecccccCCCCHhHHHh-------------HHHHHHHHHHHcCCcc---cccccCCCCCHHHHHHHHHHHHH
Q psy8397           6 HGTIWCWQIISAQYSHRISVDDILD-------------TIGLVDDILDTIGLVL---SKHTLCGRLSGGQKKRLSIALEL   69 (203)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~v~~~L~~~~L~~---~~~~~v~~LSgGqrqrl~iA~aL   69 (203)
                      ....+.||.....+++.+++.+.+.             ..+++.++++.+||.+   ..++++.+|||||+||++||+||
T Consensus        97 ~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IArAL  176 (330)
T PRK09473         97 EQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMAL  176 (330)
T ss_pred             CCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHHHH
Confidence            3577888876545667788766431             1346788899999964   34789999999999999999999


Q ss_pred             hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCce
Q psy8397          70 IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRT  148 (203)
Q Consensus        70 ~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t  148 (203)
                      +.+|++||+||||+|||+.++..+++.|++++++ |.|+|++|||+.                                 
T Consensus       177 ~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~---------------------------------  223 (330)
T PRK09473        177 LCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLG---------------------------------  223 (330)
T ss_pred             HcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHH---------------------------------
Confidence            9999999999999999999999999999999864 778888887763                                 


Q ss_pred             EEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         149 IVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       149 vi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                                .+..+||++++|++|++++.|+++++.
T Consensus       224 ----------~~~~~~Dri~vm~~G~ive~g~~~~i~  250 (330)
T PRK09473        224 ----------VVAGICDKVLVMYAGRTMEYGNARDVF  250 (330)
T ss_pred             ----------HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence                      367799999999999999999988775

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=99.95  E-value=5.3e-27  Score=210.88  Aligned_cols=135  Identities=24%  Similarity=0.372  Sum_probs=116.2

Q ss_pred             CceeEEEeeecccccCCCCHhHHHhH------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy8397           6 HGTIWCWQIISAQYSHRISVDDILDT------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLD   79 (203)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLD   79 (203)
                      ....++||..  .+++.+|+.+++..      .+++.++++.+||.+..++++.+||||||||++|||||+.+|++||||
T Consensus        76 ~~i~~v~q~~--~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLD  153 (352)
T PRK11144         76 RRIGYVFQDA--RLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMD  153 (352)
T ss_pred             CCEEEEcCCc--ccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence            3566777653  34566899987642      356889999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchh
Q psy8397          80 EPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSA  158 (203)
Q Consensus        80 EPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~  158 (203)
                      |||+|||+.++..+++.|+++.++ |.|+|++||+++                                           
T Consensus       154 EPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~-------------------------------------------  190 (352)
T PRK11144        154 EPLASLDLPRKRELLPYLERLAREINIPILYVSHSLD-------------------------------------------  190 (352)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHH-------------------------------------------
Confidence            999999999999999999999865 778888888753                                           


Q ss_pred             HHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         159 TIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       159 ~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                      ++..+||++++|++|+++..|+++++.
T Consensus       191 ~~~~~~d~i~~l~~G~i~~~g~~~~i~  217 (352)
T PRK11144        191 EILRLADRVVVLEQGKVKAFGPLEEVW  217 (352)
T ss_pred             HHHHhCCEEEEEeCCEEEEecCHHHHH
Confidence            467899999999999999999888764

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=99.95  E-value=9.6e-27  Score=194.79  Aligned_cols=131  Identities=23%  Similarity=0.333  Sum_probs=108.9

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCC
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP   74 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~   74 (203)
                      ...+.+|..  .++..+|+.|++..            .+++.++++.+|+.+..++++++||||||||++||+||+.+|+
T Consensus        74 ~i~~v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~  151 (220)
T cd03293          74 DRGYVFQQD--ALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPD  151 (220)
T ss_pred             cEEEEeccc--ccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence            345666543  24455788876532            2457789999999988999999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEee
Q psy8397          75 IMFLDEPTTGLDSNSTNQCVAMLKALAR-GGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTI  153 (203)
Q Consensus        75 vLlLDEPt~gLD~~~~~~i~~~l~~l~~-~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~  153 (203)
                      ++||||||+|||+.++..+++.|+++.+ .|.|||++||+++                                      
T Consensus       152 lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~--------------------------------------  193 (220)
T cd03293         152 VLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDID--------------------------------------  193 (220)
T ss_pred             EEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH--------------------------------------
Confidence            9999999999999999999999999864 4778888888753                                      


Q ss_pred             cCchhHHHhhcCEEEEEe--CCeEEeeCCcc
Q psy8397         154 HQPSATIFEMVDHLYVIA--EGHCVYKGSSA  182 (203)
Q Consensus       154 h~~~~~i~~~~d~v~vl~--~G~i~~~g~~~  182 (203)
                           .+..+||++++|+  +|+++..++.+
T Consensus       194 -----~~~~~~d~i~~l~~~~G~i~~~~~~~  219 (220)
T cd03293         194 -----EAVFLADRVVVLSARPGRIVAEVEVD  219 (220)
T ss_pred             -----HHHHhCCEEEEEECCCCEEEEEEEec
Confidence                 3678999999999  79999887653

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.95  E-value=2.5e-27  Score=208.83  Aligned_cols=135  Identities=24%  Similarity=0.364  Sum_probs=119.1

Q ss_pred             CceeEEEeeecccccCCCCHhHHHh--------------HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhc
Q psy8397           6 HGTIWCWQIISAQYSHRISVDDILD--------------TIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELID   71 (203)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~   71 (203)
                      ....+.||-..  ++..|||.++..              .+.++.++|+.+.|+...++++.+|||||||||++||||+.
T Consensus        77 R~VGfvFQ~YA--LF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~  154 (345)
T COG1118          77 RKVGFVFQHYA--LFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAV  154 (345)
T ss_pred             cceeEEEechh--hcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhc
Confidence            45678887644  456699998763              46789999999999999999999999999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEE
Q psy8397          72 NPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIV  150 (203)
Q Consensus        72 ~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi  150 (203)
                      +|++||||||+++||...++++..-|+++..+ |.|+|++|||++                                   
T Consensus       155 eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~e-----------------------------------  199 (345)
T COG1118         155 EPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQE-----------------------------------  199 (345)
T ss_pred             CCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHH-----------------------------------
Confidence            99999999999999999999999999998865 777777777753                                   


Q ss_pred             EeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         151 CTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       151 ~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                              ++.++||||++|++|+|...|+|+++.
T Consensus       200 --------ea~~ladrvvvl~~G~Ieqvg~p~ev~  226 (345)
T COG1118         200 --------EALELADRVVVLNQGRIEQVGPPDEVY  226 (345)
T ss_pred             --------HHHhhcceEEEecCCeeeeeCCHHHHh
Confidence                    478999999999999999999999874

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.95  E-value=1.1e-27  Score=215.66  Aligned_cols=135  Identities=26%  Similarity=0.400  Sum_probs=118.8

Q ss_pred             CceeEEEeeecccccCCCCHhHHH-------------hHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcC
Q psy8397           6 HGTIWCWQIISAQYSHRISVDDIL-------------DTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDN   72 (203)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~   72 (203)
                      ..+.++||...  +++.+||.|+.             +.+++|.++|+.++|.++.++++.+|||||||||+|||||+.+
T Consensus        77 R~ig~VFQ~YA--LFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~  154 (352)
T COG3842          77 RPIGMVFQSYA--LFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPE  154 (352)
T ss_pred             cccceeecCcc--cCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcC
Confidence            44567776533  46779999984             2456899999999999999999999999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEE
Q psy8397          73 PPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVC  151 (203)
Q Consensus        73 P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~  151 (203)
                      |++||||||.++||.+-|..+..-++++.++ |.|.|++|||.+                                    
T Consensus       155 P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqe------------------------------------  198 (352)
T COG3842         155 PKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQE------------------------------------  198 (352)
T ss_pred             cchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHH------------------------------------
Confidence            9999999999999999999999999998865 888888888754                                    


Q ss_pred             eecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         152 TIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       152 ~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                             ++..++|||.+|++|+|...|+|+++-
T Consensus       199 -------EAl~msDrI~Vm~~G~I~Q~gtP~eiY  225 (352)
T COG3842         199 -------EALAMSDRIAVMNDGRIEQVGTPEEIY  225 (352)
T ss_pred             -------HHhhhccceEEccCCceeecCCHHHHh
Confidence                   468899999999999999999999874

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.95  E-value=3.2e-27  Score=221.46  Aligned_cols=139  Identities=24%  Similarity=0.412  Sum_probs=120.0

Q ss_pred             CCceeEEEeeecccccCCCCHhHHH-------------hHHHHHHHHHHHcCCcccccc--cCCCCCHHHHHHHHHHHHH
Q psy8397           5 NHGTIWCWQIISAQYSHRISVDDIL-------------DTIGLVDDILDTIGLVLSKHT--LCGRLSGGQKKRLSIALEL   69 (203)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~v~~~L~~~~L~~~~~~--~v~~LSgGqrqrl~iA~aL   69 (203)
                      .+-+.+.||.....|++-+++.+-+             +.++++.++|+.+||.+...+  ++.+|||||||||.||+||
T Consensus        90 g~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmAL  169 (539)
T COG1123          90 GKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMAL  169 (539)
T ss_pred             cccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHH
Confidence            3556788898888888878887633             246678899999999876655  9999999999999999999


Q ss_pred             hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCce
Q psy8397          70 IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRT  148 (203)
Q Consensus        70 ~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t  148 (203)
                      +.+|++||+||||++||+..+.++++.|+++.++ |.++|++||||.                                 
T Consensus       170 a~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~---------------------------------  216 (539)
T COG1123         170 ALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLG---------------------------------  216 (539)
T ss_pred             hCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHH---------------------------------
Confidence            9999999999999999999999999999999853 667777777653                                 


Q ss_pred             EEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccchh
Q psy8397         149 IVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTIP  186 (203)
Q Consensus       149 vi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~~  186 (203)
                                .+.++||||+||++|++++.|++++++.
T Consensus       217 ----------Vva~~aDrv~Vm~~G~iVE~G~~~~i~~  244 (539)
T COG1123         217 ----------VVAELADRVVVMYKGEIVETGPTEEILS  244 (539)
T ss_pred             ----------HHHHhcCeEEEEECCEEEEecCHHHHHh
Confidence                      5789999999999999999999999873

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=99.95  E-value=9.1e-27  Score=198.16  Aligned_cols=134  Identities=25%  Similarity=0.381  Sum_probs=112.6

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH-------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCC
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT-------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNP   73 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P   73 (203)
                      +..+.+|..  .++...|+.|++..             .+++.++++.+|+....++++++||||||||++||+||+.+|
T Consensus        86 ~i~~v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~~p  163 (250)
T PRK11264         86 HVGFVFQNF--NLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRP  163 (250)
T ss_pred             hEEEEecCc--ccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhcCC
Confidence            455666543  34456788776531             235678899999998889999999999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEee
Q psy8397          74 PIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTI  153 (203)
Q Consensus        74 ~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~  153 (203)
                      ++|||||||+|||+.++..+++.|+++.++|.|||++||+++                                      
T Consensus       164 ~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~--------------------------------------  205 (250)
T PRK11264        164 EVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMS--------------------------------------  205 (250)
T ss_pred             CEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--------------------------------------
Confidence            999999999999999999999999999866788888888753                                      


Q ss_pred             cCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         154 HQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       154 h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                           .+..+||++++|++|++++.|+++++.
T Consensus       206 -----~~~~~~d~i~~l~~G~i~~~~~~~~~~  232 (250)
T PRK11264        206 -----FARDVADRAIFMDQGRIVEQGPAKALF  232 (250)
T ss_pred             -----HHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence                 367889999999999999999887653

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=99.95  E-value=7e-27  Score=210.11  Aligned_cols=135  Identities=24%  Similarity=0.396  Sum_probs=115.2

Q ss_pred             CceeEEEeeecccccCCCCHhHHHhH----------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCE
Q psy8397           6 HGTIWCWQIISAQYSHRISVDDILDT----------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPI   75 (203)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~v   75 (203)
                      ....+.+|..  .++..+|+.|++..          .+++.++++.+||.+..++++.+||||||||++|||||+.+|++
T Consensus        75 ~~i~~v~q~~--~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~l  152 (354)
T TIGR02142        75 RRIGYVFQEA--RLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRL  152 (354)
T ss_pred             CCeEEEecCC--ccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence            3456777653  34566899887642          23578899999999999999999999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeec
Q psy8397          76 MFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIH  154 (203)
Q Consensus        76 LlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h  154 (203)
                      |||||||+|||+.++..+++.|+++.++ |.|+|++||+++                                       
T Consensus       153 llLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~---------------------------------------  193 (354)
T TIGR02142       153 LLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQ---------------------------------------  193 (354)
T ss_pred             EEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH---------------------------------------
Confidence            9999999999999999999999999865 778888888764                                       


Q ss_pred             CchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         155 QPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       155 ~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                          ++..+||++++|++|+++..|+++++.
T Consensus       194 ----~~~~~~d~i~~l~~G~i~~~g~~~~~~  220 (354)
T TIGR02142       194 ----EVLRLADRVVVLEDGRVAAAGPIAEVW  220 (354)
T ss_pred             ----HHHHhCCEEEEEeCCEEEEECCHHHHh
Confidence                367889999999999999999887664

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=99.95  E-value=7.2e-27  Score=193.78  Aligned_cols=128  Identities=28%  Similarity=0.421  Sum_probs=108.8

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH--------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT--------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFL   78 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlL   78 (203)
                      ...+++|..  .++..+|+.|++..        .+++.++++.+++.+..++++++||||||||++||+||+.+|+++||
T Consensus        73 ~i~~~~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llll  150 (208)
T cd03268          73 RIGALIEAP--GFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLIL  150 (208)
T ss_pred             hEEEecCCC--ccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            345666542  34556899887632        34678899999999999999999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchh
Q psy8397          79 DEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSA  158 (203)
Q Consensus        79 DEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~  158 (203)
                      ||||+|||+.+++.+++.|++++++|.|+|++||+++                                           
T Consensus       151 DEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-------------------------------------------  187 (208)
T cd03268         151 DEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLS-------------------------------------------  187 (208)
T ss_pred             CCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-------------------------------------------
Confidence            9999999999999999999999867788888888853                                           


Q ss_pred             HHHhhcCEEEEEeCCeEEeeC
Q psy8397         159 TIFEMVDHLYVIAEGHCVYKG  179 (203)
Q Consensus       159 ~i~~~~d~v~vl~~G~i~~~g  179 (203)
                      .+..+||++++|++|++++.|
T Consensus       188 ~~~~~~d~v~~l~~g~i~~~g  208 (208)
T cd03268         188 EIQKVADRIGIINKGKLIEEG  208 (208)
T ss_pred             HHHHhcCEEEEEECCEEEecC
Confidence            367789999999999998765

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=99.95  E-value=8.4e-27  Score=196.47  Aligned_cols=133  Identities=28%  Similarity=0.405  Sum_probs=112.3

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCC
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP   74 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~   74 (203)
                      ...+.+|..  .++..+|+.|++..            .+.+.++++.+++.+..++++.+||||||||++||+||+.+|+
T Consensus        83 ~i~~~~q~~--~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~  160 (233)
T cd03258          83 RIGMIFQHF--NLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPK  160 (233)
T ss_pred             heEEEccCc--ccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCC
Confidence            456666543  34456888886532            2356788999999988999999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEee
Q psy8397          75 IMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTI  153 (203)
Q Consensus        75 vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~  153 (203)
                      ++||||||+|||+.++..+++.|+++.++ |+|||++||+++                                      
T Consensus       161 lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~--------------------------------------  202 (233)
T cd03258         161 VLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEME--------------------------------------  202 (233)
T ss_pred             EEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--------------------------------------
Confidence            99999999999999999999999999764 778888888753                                      


Q ss_pred             cCchhHHHhhcCEEEEEeCCeEEeeCCcccc
Q psy8397         154 HQPSATIFEMVDHLYVIAEGHCVYKGSSANT  184 (203)
Q Consensus       154 h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~  184 (203)
                           .+..+||++++|++|++++.|+++++
T Consensus       203 -----~~~~~~d~i~~l~~G~i~~~~~~~~~  228 (233)
T cd03258         203 -----VVKRICDRVAVMEKGEVVEEGTVEEV  228 (233)
T ss_pred             -----HHHHhCCEEEEEECCEEEEecCHHHH
Confidence                 36789999999999999999987654

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.95  E-value=1e-26  Score=202.02  Aligned_cols=135  Identities=29%  Similarity=0.407  Sum_probs=113.8

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCC
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP   74 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~   74 (203)
                      ...+++|.....++ ..|+.+++..            .+++.++++.+||.+..++++.+||||||||++|||||+.+|+
T Consensus        79 ~i~~v~q~~~~~~~-~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~  157 (277)
T PRK13652         79 FVGLVFQNPDDQIF-SPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQ  157 (277)
T ss_pred             heEEEecCcccccc-cccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCC
Confidence            35666665432233 4677776532            2357889999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEee
Q psy8397          75 IMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTI  153 (203)
Q Consensus        75 vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~  153 (203)
                      +|||||||+|||+.++..+++.++++.++ |.|||++||+++                                      
T Consensus       158 llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~--------------------------------------  199 (277)
T PRK13652        158 VLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLD--------------------------------------  199 (277)
T ss_pred             EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH--------------------------------------
Confidence            99999999999999999999999999865 788888888864                                      


Q ss_pred             cCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         154 HQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       154 h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                           .+.+.||++++|++|++++.|++++++
T Consensus       200 -----~~~~~~drv~~l~~G~i~~~g~~~~~~  226 (277)
T PRK13652        200 -----LVPEMADYIYVMDKGRIVAYGTVEEIF  226 (277)
T ss_pred             -----HHHHhCCEEEEEECCeEEEECCHHHHh
Confidence                 367899999999999999999998775

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=99.94  E-value=1.2e-26  Score=194.80  Aligned_cols=131  Identities=26%  Similarity=0.285  Sum_probs=109.2

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH-------------HHHHHHHHHHcCCccccccc--CCCCCHHHHHHHHHHHHHhc
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT-------------IGLVDDILDTIGLVLSKHTL--CGRLSGGQKKRLSIALELID   71 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~v~~~L~~~~L~~~~~~~--v~~LSgGqrqrl~iA~aL~~   71 (203)
                      ...|.+|...  ++ .+|+.|++..             .+++.++++.+|+.+..+++  +.+||||||||++||+||+.
T Consensus        82 ~i~~~~q~~~--~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~  158 (227)
T cd03260          82 RVGMVFQKPN--PF-PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALAN  158 (227)
T ss_pred             hEEEEecCch--hc-cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhc
Confidence            3556666432  34 5788886532             24577889999998877777  59999999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEE
Q psy8397          72 NPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVC  151 (203)
Q Consensus        72 ~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~  151 (203)
                      +|++|||||||+|||+.++..+++.|+++.++ .|||++||+++                                    
T Consensus       159 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~------------------------------------  201 (227)
T cd03260         159 EPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQ------------------------------------  201 (227)
T ss_pred             CCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHH------------------------------------
Confidence            99999999999999999999999999999866 78888888753                                    


Q ss_pred             eecCchhHHHhhcCEEEEEeCCeEEeeCCcccc
Q psy8397         152 TIHQPSATIFEMVDHLYVIAEGHCVYKGSSANT  184 (203)
Q Consensus       152 ~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~  184 (203)
                             .+..+||++++|.+|++++.|+++++
T Consensus       202 -------~~~~~~d~i~~l~~G~i~~~g~~~~~  227 (227)
T cd03260         202 -------QAARVADRTAFLLNGRLVEFGPTEQI  227 (227)
T ss_pred             -------HHHHhCCEEEEEeCCEEEEecCcccC
Confidence                   36789999999999999999988753

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=99.94  E-value=1.3e-26  Score=192.83  Aligned_cols=103  Identities=31%  Similarity=0.577  Sum_probs=92.3

Q ss_pred             HHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEec
Q psy8397          33 GLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH  112 (203)
Q Consensus        33 ~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH  112 (203)
                      +++.++++.+++.+..++++.+||||||||++||+||+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||
T Consensus       111 ~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH  190 (213)
T cd03235         111 AKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTH  190 (213)
T ss_pred             HHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence            46788999999998899999999999999999999999999999999999999999999999999999867788888888


Q ss_pred             CCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeC
Q psy8397         113 QPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKG  179 (203)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g  179 (203)
                      +++                                           .+.++||++++|++| +++.|
T Consensus       191 ~~~-------------------------------------------~~~~~~d~i~~l~~~-~~~~g  213 (213)
T cd03235         191 DLG-------------------------------------------LVLEYFDRVLLLNRT-VVASG  213 (213)
T ss_pred             CHH-------------------------------------------HHHHhcCEEEEEcCc-EeecC
Confidence            864                                           367889999999886 55544

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=99.94  E-value=1.9e-26  Score=198.82  Aligned_cols=136  Identities=24%  Similarity=0.370  Sum_probs=113.5

Q ss_pred             ceeEEEeeecccccCCCCHhHHHh-------------HHHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhcC
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILD-------------TIGLVDDILDTIGLV-LSKHTLCGRLSGGQKKRLSIALELIDN   72 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~v~~~L~~~~L~-~~~~~~v~~LSgGqrqrl~iA~aL~~~   72 (203)
                      ...|.+|.....+...+|+.|++.             ..+++.++++.+|+. ...++++.+||||||||++|||||+.+
T Consensus        89 ~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~  168 (265)
T TIGR02769        89 DVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVK  168 (265)
T ss_pred             ceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence            466777654323455678877541             134678899999996 678999999999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEE
Q psy8397          73 PPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVC  151 (203)
Q Consensus        73 P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~  151 (203)
                      |++|||||||+|||+.++..+++.|+++.++ |.|||++||+++                                    
T Consensus       169 p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~------------------------------------  212 (265)
T TIGR02769       169 PKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLR------------------------------------  212 (265)
T ss_pred             CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH------------------------------------
Confidence            9999999999999999999999999999864 778888888753                                    


Q ss_pred             eecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         152 TIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       152 ~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                             .+..+||++++|++|++++.|+++++.
T Consensus       213 -------~~~~~~d~i~~l~~G~i~~~g~~~~~~  239 (265)
T TIGR02769       213 -------LVQSFCQRVAVMDKGQIVEECDVAQLL  239 (265)
T ss_pred             -------HHHHHhcEEEEEeCCEEEEECCHHHHc
Confidence                   367799999999999999999988775

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=99.94  E-value=1.3e-26  Score=195.70  Aligned_cols=135  Identities=21%  Similarity=0.350  Sum_probs=113.8

Q ss_pred             CceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCC
Q psy8397           6 HGTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNP   73 (203)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P   73 (203)
                      .+..+.+|..  .++..+|+.|++..            .+++.++++.+|+.+..++++.+||||||||++||+|++.+|
T Consensus        71 ~~i~~~~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p  148 (232)
T PRK10771         71 RPVSMLFQEN--NLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQ  148 (232)
T ss_pred             ccEEEEeccc--ccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCC
Confidence            3456667643  34556788876531            235788999999998999999999999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEe
Q psy8397          74 PIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCT  152 (203)
Q Consensus        74 ~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~  152 (203)
                      +++||||||+|||+.+++.+++.|+++.++ |.|||++||+++                                     
T Consensus       149 ~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-------------------------------------  191 (232)
T PRK10771        149 PILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLE-------------------------------------  191 (232)
T ss_pred             CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-------------------------------------
Confidence            999999999999999999999999998754 778888888753                                     


Q ss_pred             ecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         153 IHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       153 ~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                            .+.++||+++++.+|++++.|+++++.
T Consensus       192 ------~~~~~~d~i~~l~~g~i~~~g~~~~~~  218 (232)
T PRK10771        192 ------DAARIAPRSLVVADGRIAWDGPTDELL  218 (232)
T ss_pred             ------HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence                  367899999999999999999887665

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.94  E-value=2.5e-27  Score=196.85  Aligned_cols=131  Identities=25%  Similarity=0.459  Sum_probs=114.5

Q ss_pred             EEEeeecccccCCCCHhHHH-------------hHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEE
Q psy8397          10 WCWQIISAQYSHRISVDDIL-------------DTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIM   76 (203)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~-------------~~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vL   76 (203)
                      ++||-++. ++ .+|+-|+.             +..++++.+|..+|+.+..+.++..|||||+||++|||||+++|+++
T Consensus        97 mVFQ~FNL-Ws-HmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIARaLameP~vm  174 (256)
T COG4598          97 MVFQHFNL-WS-HMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVM  174 (256)
T ss_pred             Hhhhhcch-hH-HHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHHHHHhcCCceE
Confidence            45555552 43 37777754             24667889999999999999999999999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCc
Q psy8397          77 FLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQP  156 (203)
Q Consensus        77 lLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~  156 (203)
                      ++||||++|||.-..++++.++.|+++|+|.+++||.+.                                         
T Consensus       175 LFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~-----------------------------------------  213 (256)
T COG4598         175 LFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMG-----------------------------------------  213 (256)
T ss_pred             eecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehh-----------------------------------------
Confidence            999999999999999999999999988888888888764                                         


Q ss_pred             hhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         157 SATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       157 ~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                        ++...+.+++++.+|.|-.+|+|++++
T Consensus       214 --FAR~Vss~v~fLh~G~iEE~G~P~qvf  240 (256)
T COG4598         214 --FARDVSSHVIFLHQGKIEEEGPPEQVF  240 (256)
T ss_pred             --HHHhhhhheEEeecceecccCChHHHh
Confidence              467889999999999999999999886

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=99.94  E-value=1.4e-26  Score=196.15  Aligned_cols=133  Identities=28%  Similarity=0.446  Sum_probs=112.8

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH--------------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHH
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT--------------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIA   66 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA   66 (203)
                      +..+.+|..  .++..+|+.|++..                    .+++.++++.+|+.+..++++++|||||+||++||
T Consensus        78 ~i~~~~q~~--~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~la  155 (242)
T TIGR03411        78 GIGRKFQKP--TVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIG  155 (242)
T ss_pred             CeeEecccc--ccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHH
Confidence            456666543  34566788876532                    34678899999999889999999999999999999


Q ss_pred             HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCC
Q psy8397          67 LELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGG  146 (203)
Q Consensus        67 ~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  146 (203)
                      |||+.+|++|+|||||+|||+.++..+++.|+++.+ +.|||++||+++                               
T Consensus       156 ral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-------------------------------  203 (242)
T TIGR03411       156 MLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDME-------------------------------  203 (242)
T ss_pred             HHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHH-------------------------------
Confidence            999999999999999999999999999999999875 678888888754                               


Q ss_pred             ceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         147 RTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       147 ~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                                  .+..+||+++++++|++++.|+++++.
T Consensus       204 ------------~~~~~~d~i~~l~~g~~~~~~~~~~~~  230 (242)
T TIGR03411       204 ------------FVRSIADKVTVLHQGSVLAEGSLDQVQ  230 (242)
T ss_pred             ------------HHHHhCCEEEEEECCeEEeeCCHHHHh
Confidence                        367899999999999999999887764

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=99.94  E-value=1.2e-26  Score=211.20  Aligned_cols=135  Identities=21%  Similarity=0.354  Sum_probs=117.3

Q ss_pred             CceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCC
Q psy8397           6 HGTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNP   73 (203)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P   73 (203)
                      +...+.||.+.  +++.+|+.|++..            .+++.++++.+||.+..++++.+||||||||++|||||+.+|
T Consensus       106 ~~i~~vfQ~~~--l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P  183 (382)
T TIGR03415       106 HRVSMVFQKFA--LMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDA  183 (382)
T ss_pred             CCEEEEECCCc--CCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence            46778887543  4567899887642            346788999999999999999999999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEe
Q psy8397          74 PIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCT  152 (203)
Q Consensus        74 ~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~  152 (203)
                      ++|||||||+|||+.++..+++.|.++.++ |+|||++||+++                                     
T Consensus       184 ~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~-------------------------------------  226 (382)
T TIGR03415       184 DILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLD-------------------------------------  226 (382)
T ss_pred             CEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-------------------------------------
Confidence            999999999999999999999999999864 778888888764                                     


Q ss_pred             ecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         153 IHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       153 ~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                            ++.++||++++|++|+++..|+++++.
T Consensus       227 ------e~~~l~DrI~vl~~G~iv~~g~~~ei~  253 (382)
T TIGR03415       227 ------EALKIGNRIAIMEGGRIIQHGTPEEIV  253 (382)
T ss_pred             ------HHHHhCCEEEEEECCEEEEecCHHHHh
Confidence                  467899999999999999999998764

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=99.94  E-value=1.3e-26  Score=196.13  Aligned_cols=131  Identities=21%  Similarity=0.330  Sum_probs=108.9

Q ss_pred             eEEEeeecccccCCCCHhHHHhH--------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCC
Q psy8397           9 IWCWQIISAQYSHRISVDDILDT--------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP   74 (203)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~--------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~   74 (203)
                      .+.+|..  .++..+|+.|++..              .+++.++++.+|+.+..++++++||||||||++||++|+.+|+
T Consensus        57 ~~v~q~~--~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~  134 (230)
T TIGR01184        57 MVVFQNY--SLLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPK  134 (230)
T ss_pred             eEEecCc--ccCCCCCHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence            3455432  34456788876532              2246788999999988999999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEee
Q psy8397          75 IMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTI  153 (203)
Q Consensus        75 vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~  153 (203)
                      +|||||||+|||+.+++.+++.|+++.++ |.|||++||+++                                      
T Consensus       135 lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~--------------------------------------  176 (230)
T TIGR01184       135 VLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVD--------------------------------------  176 (230)
T ss_pred             EEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--------------------------------------
Confidence            99999999999999999999999998764 777888877753                                      


Q ss_pred             cCchhHHHhhcCEEEEEeCCeEEeeCCcccc
Q psy8397         154 HQPSATIFEMVDHLYVIAEGHCVYKGSSANT  184 (203)
Q Consensus       154 h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~  184 (203)
                           .+..+||++++|++|+++..|++.++
T Consensus       177 -----~~~~~~d~v~~l~~G~i~~~~~~~~~  202 (230)
T TIGR01184       177 -----EALLLSDRVVMLTNGPAANIGQILEV  202 (230)
T ss_pred             -----HHHHhcCEEEEEeCCcEecccCceec
Confidence                 36789999999999999998876554

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.94  E-value=1.2e-26  Score=197.89  Aligned_cols=110  Identities=25%  Similarity=0.472  Sum_probs=99.6

Q ss_pred             HHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEe
Q psy8397          33 GLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTI  111 (203)
Q Consensus        33 ~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~t  111 (203)
                      +++.++++.+|+.+..++++++||||||||++||+||+.+|++|||||||+|||+.++..+++.|++++++ |.|||++|
T Consensus       132 ~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~s  211 (255)
T PRK11300        132 DRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIE  211 (255)
T ss_pred             HHHHHHHHhCChhhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEe
Confidence            35677899999998999999999999999999999999999999999999999999999999999999865 78888888


Q ss_pred             cCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         112 HQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       112 H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                      |+++                                           .+.++||+++++++|++++.|+++++.
T Consensus       212 H~~~-------------------------------------------~~~~~~d~i~~l~~g~i~~~~~~~~~~  242 (255)
T PRK11300        212 HDMK-------------------------------------------LVMGISDRIYVVNQGTPLANGTPEEIR  242 (255)
T ss_pred             CCHH-------------------------------------------HHHHhCCEEEEEECCeEEecCCHHHHh
Confidence            8753                                           367899999999999999999987654

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=99.94  E-value=4.1e-27  Score=197.55  Aligned_cols=137  Identities=25%  Similarity=0.413  Sum_probs=119.6

Q ss_pred             CCceeEEEeeecccccCCCCHhHHHhH--------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHh
Q psy8397           5 NHGTIWCWQIISAQYSHRISVDDILDT--------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELI   70 (203)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~   70 (203)
                      ..|..|.+|..|  .+..+||+|++..              +.+++++|+.|++.+.++++..+||||||+|+.|||||+
T Consensus        78 rlGigYLpQE~S--IFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa  155 (243)
T COG1137          78 RLGIGYLPQEAS--IFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALA  155 (243)
T ss_pred             hcCcccccccch--HhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHh
Confidence            356777777665  4688999997631              335779999999999999999999999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEE
Q psy8397          71 DNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIV  150 (203)
Q Consensus        71 ~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi  150 (203)
                      .+|++++||||++|+||.+...+.++++.|+..|..|++|-|+..                                   
T Consensus       156 ~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVR-----------------------------------  200 (243)
T COG1137         156 ANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVR-----------------------------------  200 (243)
T ss_pred             cCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHH-----------------------------------
Confidence            999999999999999999999999999999977777777777743                                   


Q ss_pred             EeecCchhHHHhhcCEEEEEeCCeEEeeCCcccchh
Q psy8397         151 CTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTIP  186 (203)
Q Consensus       151 ~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~~  186 (203)
                              +...+|||.+++.+|+++++|+|+++..
T Consensus       201 --------EtL~i~dRaYIi~~G~vla~G~p~ei~~  228 (243)
T COG1137         201 --------ETLDICDRAYIISDGKVLAEGSPEEIVN  228 (243)
T ss_pred             --------HHHhhhheEEEEecCeEEecCCHHHHhc
Confidence                    3578999999999999999999998863

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=99.94  E-value=1.5e-26  Score=199.95  Aligned_cols=134  Identities=24%  Similarity=0.331  Sum_probs=112.5

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH-------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCC
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT-------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNP   73 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P   73 (203)
                      ...+.+|..  .++..+|+.|++..             ..++.++++.+|+.+..++++++||||||||++||+||+.+|
T Consensus        85 ~i~~v~q~~--~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p  162 (269)
T PRK11831         85 RMSMLFQSG--ALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEP  162 (269)
T ss_pred             cEEEEeccc--ccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence            355666643  34566788886532             124667899999998899999999999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEe
Q psy8397          74 PIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCT  152 (203)
Q Consensus        74 ~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~  152 (203)
                      ++|||||||+|||+.+++.+++.|+++.++ |.|||++||+++                                     
T Consensus       163 ~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-------------------------------------  205 (269)
T PRK11831        163 DLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVP-------------------------------------  205 (269)
T ss_pred             CEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-------------------------------------
Confidence            999999999999999999999999999764 778888888753                                     


Q ss_pred             ecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         153 IHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       153 ~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                            .+.++||++++|++|++++.|+++++.
T Consensus       206 ------~~~~~~d~v~~l~~G~i~~~g~~~~~~  232 (269)
T PRK11831        206 ------EVLSIADHAYIVADKKIVAHGSAQALQ  232 (269)
T ss_pred             ------HHHHhhCEEEEEECCEEEEeCCHHHHh
Confidence                  467889999999999999999887654

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=99.94  E-value=1.4e-26  Score=211.83  Aligned_cols=134  Identities=25%  Similarity=0.313  Sum_probs=115.1

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCC
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP   74 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~   74 (203)
                      ...|.+|..  .+++.+|+.|++..            .+++.++++.+||.+..++++.+||||||||++|||||+.+|+
T Consensus       107 ~igyv~Q~~--~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~  184 (400)
T PRK10070        107 KIAMVFQSF--ALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPD  184 (400)
T ss_pred             CEEEEECCC--cCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCC
Confidence            567777753  35567899887642            2467789999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEee
Q psy8397          75 IMFLDEPTTGLDSNSTNQCVAMLKALAR-GGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTI  153 (203)
Q Consensus        75 vLlLDEPt~gLD~~~~~~i~~~l~~l~~-~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~  153 (203)
                      +|||||||+|||+.++..+++.|+++.+ .|+|||++||+++                                      
T Consensus       185 iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~--------------------------------------  226 (400)
T PRK10070        185 ILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLD--------------------------------------  226 (400)
T ss_pred             EEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHH--------------------------------------
Confidence            9999999999999999999999999975 4778888888754                                      


Q ss_pred             cCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         154 HQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       154 h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                           ++.++||++++|++|+++..|+++++.
T Consensus       227 -----~~~~~~Dri~vL~~G~i~~~g~~~~l~  253 (400)
T PRK10070        227 -----EAMRIGDRIAIMQNGEVVQVGTPDEIL  253 (400)
T ss_pred             -----HHHHhCCEEEEEECCEEEecCCHHHHH
Confidence                 367899999999999999999887764

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=99.94  E-value=1.7e-26  Score=194.96  Aligned_cols=136  Identities=24%  Similarity=0.358  Sum_probs=111.1

Q ss_pred             ceeEEEeeecccccCCCCHhHHHh------------HHHHHHHHHHHcCCc---ccccccCCCCCHHHHHHHHHHHHHhc
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILD------------TIGLVDDILDTIGLV---LSKHTLCGRLSGGQKKRLSIALELID   71 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~v~~~L~~~~L~---~~~~~~v~~LSgGqrqrl~iA~aL~~   71 (203)
                      ...+.+|.....+...+|+.++..            ..+++.++++.+++.   +..++++++|||||||||+|||||+.
T Consensus        63 ~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~  142 (230)
T TIGR02770        63 HIATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLL  142 (230)
T ss_pred             eeEEEecCchhhcCcccCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhc
Confidence            455666654322444567655421            134578899999997   56799999999999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEE
Q psy8397          72 NPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIV  150 (203)
Q Consensus        72 ~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi  150 (203)
                      +|++|||||||+|||+.++..+++.|+++.++ |+|||++||+++                                   
T Consensus       143 ~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-----------------------------------  187 (230)
T TIGR02770       143 EPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLG-----------------------------------  187 (230)
T ss_pred             CCCEEEEcCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-----------------------------------
Confidence            99999999999999999999999999999764 778888888753                                   


Q ss_pred             EeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         151 CTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       151 ~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                              .+..+||++++|++|+++..|+++++.
T Consensus       188 --------~~~~~~d~i~~l~~G~i~~~~~~~~~~  214 (230)
T TIGR02770       188 --------VVARIADEVAVMDDGRIVERGTVKEIF  214 (230)
T ss_pred             --------HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence                    467899999999999999999987764

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=99.94  E-value=1.9e-26  Score=191.64  Aligned_cols=128  Identities=23%  Similarity=0.350  Sum_probs=107.2

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCC
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP   74 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~   74 (203)
                      ...+.+|..  .++...|+.+++..            .+++.++++.+|+.+..++++.+||||||||++||+||+.+|+
T Consensus        73 ~i~~~~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~  150 (213)
T cd03301          73 DIAMVFQNY--ALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPK  150 (213)
T ss_pred             eEEEEecCh--hhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence            455666543  24456788776532            3356788999999988999999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEee
Q psy8397          75 IMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTI  153 (203)
Q Consensus        75 vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~  153 (203)
                      ++||||||+|||+.++..+++.|++++++ |.|||++||+++                                      
T Consensus       151 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~--------------------------------------  192 (213)
T cd03301         151 VFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQV--------------------------------------  192 (213)
T ss_pred             EEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--------------------------------------
Confidence            99999999999999999999999999864 778888888753                                      


Q ss_pred             cCchhHHHhhcCEEEEEeCCeEEeeC
Q psy8397         154 HQPSATIFEMVDHLYVIAEGHCVYKG  179 (203)
Q Consensus       154 h~~~~~i~~~~d~v~vl~~G~i~~~g  179 (203)
                           .+..+||+++++.+|++++.|
T Consensus       193 -----~~~~~~d~i~~l~~g~~~~~g  213 (213)
T cd03301         193 -----EAMTMADRIAVMNDGQIQQIG  213 (213)
T ss_pred             -----HHHHhcCeEEEEECCEEEecC
Confidence                 367889999999999998765

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=99.94  E-value=2.4e-26  Score=193.55  Aligned_cols=109  Identities=29%  Similarity=0.500  Sum_probs=99.3

Q ss_pred             HHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEec
Q psy8397          33 GLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH  112 (203)
Q Consensus        33 ~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH  112 (203)
                      +++.++++.+++.+..++++++||||||||++|||||+.+|+++||||||+|||+.++..+.+.|+++.++|.|+|++||
T Consensus        92 ~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~tvii~sH  171 (223)
T TIGR03771        92 AAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTH  171 (223)
T ss_pred             HHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence            45788999999998899999999999999999999999999999999999999999999999999999866888888888


Q ss_pred             CCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         113 QPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                      +++                                           .+.++||+++++ +|++++.|+++++.
T Consensus       172 ~~~-------------------------------------------~~~~~~d~i~~l-~G~i~~~~~~~~~~  200 (223)
T TIGR03771       172 DLA-------------------------------------------QAMATCDRVVLL-NGRVIADGTPQQLQ  200 (223)
T ss_pred             CHH-------------------------------------------HHHHhCCEEEEE-CCEEEeecCHHHhc
Confidence            853                                           367899999999 89999999988764

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=99.94  E-value=1.8e-26  Score=197.55  Aligned_cols=134  Identities=26%  Similarity=0.401  Sum_probs=112.7

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH----------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHh
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT----------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELI   70 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~   70 (203)
                      ...+.+|..  .+++.+|+.|+...                .+++.++++.+|+.+..++++.+|||||+||++||+||+
T Consensus        77 ~i~~~~q~~--~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~  154 (255)
T PRK11231         77 RLALLPQHH--LTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLA  154 (255)
T ss_pred             heEEecccC--CCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHh
Confidence            355666543  24455677776432                235778899999998899999999999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEE
Q psy8397          71 DNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIV  150 (203)
Q Consensus        71 ~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi  150 (203)
                      .+|++|||||||+|||+.++..+++.|+++.++|.|||++||+++                                   
T Consensus       155 ~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~-----------------------------------  199 (255)
T PRK11231        155 QDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLN-----------------------------------  199 (255)
T ss_pred             cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-----------------------------------
Confidence            999999999999999999999999999999866788888888864                                   


Q ss_pred             EeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         151 CTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       151 ~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                              .+.++||+++++++|+++..|+++++.
T Consensus       200 --------~~~~~~d~i~~l~~G~i~~~~~~~~~~  226 (255)
T PRK11231        200 --------QASRYCDHLVVLANGHVMAQGTPEEVM  226 (255)
T ss_pred             --------HHHHhcCEEEEEECCeEEEEcCHHHhc
Confidence                    467899999999999999999887764

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=99.94  E-value=2.7e-26  Score=199.68  Aligned_cols=134  Identities=28%  Similarity=0.366  Sum_probs=111.0

Q ss_pred             ceeEEEeeecccccCCCCHhHHHh------------HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCC
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILD------------TIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP   74 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~   74 (203)
                      ...++||....++. ..++.+++.            ..+++.++++.+||.+..++++++||||||||++||++|+.+|+
T Consensus        86 ~i~~v~q~~~~~~~-~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~  164 (280)
T PRK13633         86 KAGMVFQNPDNQIV-ATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPE  164 (280)
T ss_pred             heEEEecChhhhhc-cccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence            45667765432232 346665442            13567889999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEee
Q psy8397          75 IMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTI  153 (203)
Q Consensus        75 vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~  153 (203)
                      +|||||||+|||+.++..+++.|++++++ |.|||++||+++                                      
T Consensus       165 llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~--------------------------------------  206 (280)
T PRK13633        165 CIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYME--------------------------------------  206 (280)
T ss_pred             EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChH--------------------------------------
Confidence            99999999999999999999999999764 888888888864                                      


Q ss_pred             cCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         154 HQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       154 h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                           .+.. ||++++|++|++++.|+++++.
T Consensus       207 -----~~~~-~d~v~~l~~G~i~~~g~~~~~~  232 (280)
T PRK13633        207 -----EAVE-ADRIIVMDSGKVVMEGTPKEIF  232 (280)
T ss_pred             -----HHhc-CCEEEEEECCEEEEecCHHHHh
Confidence                 2444 9999999999999999988765

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=99.94  E-value=1.6e-26  Score=196.20  Aligned_cols=133  Identities=26%  Similarity=0.429  Sum_probs=111.6

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcc--cccccCCCCCHHHHHHHHHHHHHhcC
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVL--SKHTLCGRLSGGQKKRLSIALELIDN   72 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~--~~~~~v~~LSgGqrqrl~iA~aL~~~   72 (203)
                      ...+.+|..  .++..+|+.|++..            .+++.++++.+++..  ..++++.+||||||||++|||||+.+
T Consensus        76 ~i~~~~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~  153 (242)
T cd03295          76 KIGYVIQQI--GLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAAD  153 (242)
T ss_pred             ceEEEccCc--cccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcC
Confidence            455666542  34556788877532            235778999999986  78999999999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEE
Q psy8397          73 PPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVC  151 (203)
Q Consensus        73 P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~  151 (203)
                      |++|||||||+|||+.++..+++.|++++++ |+|||++||+++                                    
T Consensus       154 p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~------------------------------------  197 (242)
T cd03295         154 PPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDID------------------------------------  197 (242)
T ss_pred             CCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH------------------------------------
Confidence            9999999999999999999999999999864 788888888753                                    


Q ss_pred             eecCchhHHHhhcCEEEEEeCCeEEeeCCcccc
Q psy8397         152 TIHQPSATIFEMVDHLYVIAEGHCVYKGSSANT  184 (203)
Q Consensus       152 ~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~  184 (203)
                             .+..+||++++|++|++++.|+++++
T Consensus       198 -------~~~~~~d~i~~l~~G~i~~~~~~~~~  223 (242)
T cd03295         198 -------EAFRLADRIAIMKNGEIVQVGTPDEI  223 (242)
T ss_pred             -------HHHHhCCEEEEEECCEEEEecCHHHH
Confidence                   36789999999999999999987765

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=99.94  E-value=1.9e-26  Score=195.36  Aligned_cols=134  Identities=25%  Similarity=0.358  Sum_probs=112.8

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH-------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCC
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT-------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNP   73 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P   73 (203)
                      ...+.+|..  .++..+|+.+++..             .+++.++++.+|+.+..++++.+||||||||++||+||+.+|
T Consensus        78 ~i~~~~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p  155 (240)
T PRK09493         78 EAGMVFQQF--YLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKP  155 (240)
T ss_pred             ceEEEeccc--ccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCC
Confidence            456666543  34456788776532             235678999999998889999999999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEee
Q psy8397          74 PIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTI  153 (203)
Q Consensus        74 ~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~  153 (203)
                      ++++|||||+|||+.++..+++.|+++.++|+|||++||+++                                      
T Consensus       156 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~--------------------------------------  197 (240)
T PRK09493        156 KLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIG--------------------------------------  197 (240)
T ss_pred             CEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--------------------------------------
Confidence            999999999999999999999999999866888888888864                                      


Q ss_pred             cCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         154 HQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       154 h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                           .+..+||++++|++|++++.|+++++.
T Consensus       198 -----~~~~~~d~i~~l~~G~i~~~g~~~~~~  224 (240)
T PRK09493        198 -----FAEKVASRLIFIDKGRIAEDGDPQVLI  224 (240)
T ss_pred             -----HHHHhCCEEEEEECCEEEeeCCHHHHh
Confidence                 367889999999999999999887653

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.94  E-value=4.2e-26  Score=197.90  Aligned_cols=135  Identities=28%  Similarity=0.372  Sum_probs=110.8

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhcCC
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLV-LSKHTLCGRLSGGQKKRLSIALELIDNP   73 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~-~~~~~~v~~LSgGqrqrl~iA~aL~~~P   73 (203)
                      ...|.+|.....++. .|+.+++..            .+++.++++.+||. ...++++.+||||||||++||+||+.+|
T Consensus        86 ~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p  164 (280)
T PRK13649         86 KVGLVFQFPESQLFE-ETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEP  164 (280)
T ss_pred             heEEEeeChhhhhcc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence            356667653222333 577776532            23467788999997 4679999999999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEee
Q psy8397          74 PIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTI  153 (203)
Q Consensus        74 ~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~  153 (203)
                      ++|||||||+|||+.+++.+++.|++++++|.|||++||+++                                      
T Consensus       165 ~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~--------------------------------------  206 (280)
T PRK13649        165 KILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMD--------------------------------------  206 (280)
T ss_pred             CEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH--------------------------------------
Confidence            999999999999999999999999999866788888888753                                      


Q ss_pred             cCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         154 HQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       154 h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                           .+..+||++++|++|++++.|+++++.
T Consensus       207 -----~~~~~~d~i~~l~~G~i~~~g~~~~~~  233 (280)
T PRK13649        207 -----DVANYADFVYVLEKGKLVLSGKPKDIF  233 (280)
T ss_pred             -----HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence                 367889999999999999999887764

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=99.94  E-value=1.9e-26  Score=192.57  Aligned_cols=133  Identities=25%  Similarity=0.429  Sum_probs=110.9

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH----------HHHHHHHHHHc-CCcccccccCCCCCHHHHHHHHHHHHHhcCCCE
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT----------IGLVDDILDTI-GLVLSKHTLCGRLSGGQKKRLSIALELIDNPPI   75 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~v~~~L~~~-~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~v   75 (203)
                      ...|.+|..  .++..+|+.+++..          .+++.++++.+ ++.+..++++.+||||||||++|||||+.+|++
T Consensus        76 ~i~~~~q~~--~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l  153 (222)
T cd03224          76 GIGYVPEGR--RIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKL  153 (222)
T ss_pred             CeEEecccc--ccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCE
Confidence            456667643  34566788876532          23456778888 578888999999999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecC
Q psy8397          76 MFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQ  155 (203)
Q Consensus        76 LlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~  155 (203)
                      |||||||+|||+.++..+++.|++++++|.|||++||+++                                        
T Consensus       154 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~----------------------------------------  193 (222)
T cd03224         154 LLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNAR----------------------------------------  193 (222)
T ss_pred             EEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH----------------------------------------
Confidence            9999999999999999999999999867788888888853                                        


Q ss_pred             chhHHHhhcCEEEEEeCCeEEeeCCcccc
Q psy8397         156 PSATIFEMVDHLYVIAEGHCVYKGSSANT  184 (203)
Q Consensus       156 ~~~~i~~~~d~v~vl~~G~i~~~g~~~~~  184 (203)
                         .+..+||++++|++|+++..|+++++
T Consensus       194 ---~~~~~~d~i~~l~~G~i~~~~~~~~~  219 (222)
T cd03224         194 ---FALEIADRAYVLERGRVVLEGTAAEL  219 (222)
T ss_pred             ---HHHHhccEEEEeeCCeEEEeCCHHHH
Confidence               36789999999999999999887654

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.94  E-value=2e-26  Score=199.26  Aligned_cols=121  Identities=30%  Similarity=0.510  Sum_probs=104.6

Q ss_pred             HHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEec
Q psy8397          33 GLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH  112 (203)
Q Consensus        33 ~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH  112 (203)
                      +++.++++.+|+.+..++++.+||||||||++||++|+.+|++|||||||+|||+.++..+++.|+++.++|.|||++||
T Consensus       115 ~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH  194 (271)
T PRK13638        115 RRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSH  194 (271)
T ss_pred             HHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeC
Confidence            45678899999998899999999999999999999999999999999999999999999999999999866788888888


Q ss_pred             CCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccchh---HHH
Q psy8397         113 QPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTIP---YLQ  189 (203)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~~---~~~  189 (203)
                      +++                                           .+..+||++++|.+|++++.|+++++..   .++
T Consensus       195 ~~~-------------------------------------------~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~  231 (271)
T PRK13638        195 DID-------------------------------------------LIYEISDAVYVLRQGQILTHGAPGEVFACTEAME  231 (271)
T ss_pred             CHH-------------------------------------------HHHHhCCEEEEEECCEEEEeCCHHHHhcChhHHH
Confidence            864                                           3678899999999999999999877642   334


Q ss_pred             hcCCCCC
Q psy8397         190 TIGLHCP  196 (203)
Q Consensus       190 ~~g~~~p  196 (203)
                      ..|...|
T Consensus       232 ~~~~~~~  238 (271)
T PRK13638        232 QAGLTQP  238 (271)
T ss_pred             hcCCCCC
Confidence            4454433

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=99.94  E-value=3.1e-26  Score=190.34  Aligned_cols=128  Identities=22%  Similarity=0.383  Sum_probs=107.7

Q ss_pred             ceeEEEeeecccccCCCCHhHHHh------------HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCC
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILD------------TIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP   74 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~   74 (203)
                      ...+.+|..  .++..+|+.|++.            ..+++.++++.+|+.+..++++.+||||||||++||+||+.+|+
T Consensus        71 ~i~~~~q~~--~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~  148 (211)
T cd03298          71 PVSMLFQEN--NLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKP  148 (211)
T ss_pred             cEEEEeccc--ccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCC
Confidence            456677653  3455678888653            13367889999999988999999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEee
Q psy8397          75 IMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTI  153 (203)
Q Consensus        75 vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~  153 (203)
                      +|||||||+|||+.++..+++.|+++.++ |.|||++||+++                                      
T Consensus       149 llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~--------------------------------------  190 (211)
T cd03298         149 VLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPE--------------------------------------  190 (211)
T ss_pred             EEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH--------------------------------------
Confidence            99999999999999999999999999754 778888888753                                      


Q ss_pred             cCchhHHHhhcCEEEEEeCCeEEeeC
Q psy8397         154 HQPSATIFEMVDHLYVIAEGHCVYKG  179 (203)
Q Consensus       154 h~~~~~i~~~~d~v~vl~~G~i~~~g  179 (203)
                           .+.++||++++|++|+++..|
T Consensus       191 -----~~~~~~d~i~~l~~G~i~~~~  211 (211)
T cd03298         191 -----DAKRLAQRVVFLDNGRIAAQG  211 (211)
T ss_pred             -----HHHhhhCEEEEEECCEEeecC
Confidence                 367889999999999988654

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PLN03140 ABC transporter G family member; Provisional

Probab=99.94  E-value=6e-27  Score=241.18  Aligned_cols=127  Identities=31%  Similarity=0.619  Sum_probs=114.7

Q ss_pred             HHHHHHHcCCcccccc-----cCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEE
Q psy8397          35 VDDILDTIGLVLSKHT-----LCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALAR-GGRTIV  108 (203)
Q Consensus        35 v~~~L~~~~L~~~~~~-----~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~-~g~tvi  108 (203)
                      ++++++.+||.+++|+     .++.|||||||||+||++|+.+|+++||||||+|||+.++..+++.|+++++ .|+|+|
T Consensus       312 ~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tvi  391 (1470)
T PLN03140        312 TDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVL  391 (1470)
T ss_pred             HHHHHHHcCCccccCceeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEE
Confidence            3568899999887754     5578999999999999999999999999999999999999999999999986 377777


Q ss_pred             EEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccchhHH
Q psy8397         109 CTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTIPYL  188 (203)
Q Consensus       109 ~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~~~~  188 (203)
                      +++|++.                                          .++.++||+|++|++|++++.|+++++.+||
T Consensus       392 is~Hqp~------------------------------------------~~i~~lfD~vilL~~G~ivy~G~~~~~~~yF  429 (1470)
T PLN03140        392 MSLLQPA------------------------------------------PETFDLFDDIILLSEGQIVYQGPRDHILEFF  429 (1470)
T ss_pred             EEecCCC------------------------------------------HHHHHHhheEEEeeCceEEEeCCHHHHHHHH
Confidence            7777764                                          2478899999999999999999999999999


Q ss_pred             HhcCCCCCCCCCCCC
Q psy8397         189 QTIGLHCPQYHNPAD  203 (203)
Q Consensus       189 ~~~g~~~p~~~~~~d  203 (203)
                      +++|+.||+..||||
T Consensus       430 ~~lGf~cP~~~n~AD  444 (1470)
T PLN03140        430 ESCGFKCPERKGTAD  444 (1470)
T ss_pred             HHcCCCCCCCCChHH
Confidence            999999999999997

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=99.94  E-value=2.6e-26  Score=190.66  Aligned_cols=128  Identities=23%  Similarity=0.379  Sum_probs=107.0

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCC
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP   74 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~   74 (203)
                      ...+.+|..  .++..+|+.|++..            .+++.++++.+|+....++++.+||||||||++||+||+.+|+
T Consensus        71 ~i~~~~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~  148 (210)
T cd03269          71 RIGYLPEER--GLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPE  148 (210)
T ss_pred             cEEEeccCC--cCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCC
Confidence            345556543  34456788886532            3457789999999988999999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeec
Q psy8397          75 IMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIH  154 (203)
Q Consensus        75 vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h  154 (203)
                      +++|||||+|||+.++..+++.|+++.++|.|||++||+++                                       
T Consensus       149 ~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~---------------------------------------  189 (210)
T cd03269         149 LLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQME---------------------------------------  189 (210)
T ss_pred             EEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH---------------------------------------
Confidence            99999999999999999999999998866788888888753                                       


Q ss_pred             CchhHHHhhcCEEEEEeCCeEEeeC
Q psy8397         155 QPSATIFEMVDHLYVIAEGHCVYKG  179 (203)
Q Consensus       155 ~~~~~i~~~~d~v~vl~~G~i~~~g  179 (203)
                          .+.++||++++|++|++++.|
T Consensus       190 ----~~~~~~d~i~~l~~g~i~~~~  210 (210)
T cd03269         190 ----LVEELCDRVLLLNKGRAVLYG  210 (210)
T ss_pred             ----HHHHhhhEEEEEeCCEEEecC
Confidence                367889999999999998654

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=99.94  E-value=3.3e-26  Score=190.85  Aligned_cols=128  Identities=27%  Similarity=0.382  Sum_probs=107.5

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH----------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEE
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT----------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIM   76 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vL   76 (203)
                      ...+.+|..  .++..+|+.+++..          .+++.++++.+|+....++++.+||||||||++||+||+.+|+++
T Consensus        76 ~i~~~~q~~--~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll  153 (214)
T cd03297          76 KIGLVFQQY--ALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELL  153 (214)
T ss_pred             cEEEEecCC--ccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence            455666543  34556788876532          235778999999998889999999999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecC
Q psy8397          77 FLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQ  155 (203)
Q Consensus        77 lLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~  155 (203)
                      +|||||+|||+.+++.+++.|++++++ |.|||++||+++                                        
T Consensus       154 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~----------------------------------------  193 (214)
T cd03297         154 LLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLS----------------------------------------  193 (214)
T ss_pred             EEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHH----------------------------------------
Confidence            999999999999999999999999764 778888887753                                        


Q ss_pred             chhHHHhhcCEEEEEeCCeEEeeC
Q psy8397         156 PSATIFEMVDHLYVIAEGHCVYKG  179 (203)
Q Consensus       156 ~~~~i~~~~d~v~vl~~G~i~~~g  179 (203)
                         .+..+||++++|++|++++.|
T Consensus       194 ---~~~~~~d~i~~l~~G~i~~~g  214 (214)
T cd03297         194 ---EAEYLADRIVVMEDGRLQYIG  214 (214)
T ss_pred             ---HHHHhcCEEEEEECCEEEecC
Confidence               367889999999999998765

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=99.94  E-value=3.7e-26  Score=195.80  Aligned_cols=134  Identities=22%  Similarity=0.340  Sum_probs=112.4

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH-------------HHHHHHHHHHcCCcccc-cccCCCCCHHHHHHHHHHHHHhcC
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT-------------IGLVDDILDTIGLVLSK-HTLCGRLSGGQKKRLSIALELIDN   72 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~v~~~L~~~~L~~~~-~~~v~~LSgGqrqrl~iA~aL~~~   72 (203)
                      ...|.+|..  .+...+|+.|++..             .+++.++++.+|+.... ++++.+||||||||++|||||+.+
T Consensus        93 ~i~~v~q~~--~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~laral~~~  170 (257)
T PRK10619         93 RLTMVFQHF--NLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAME  170 (257)
T ss_pred             ceEEEecCc--ccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHhcC
Confidence            456666543  24455788887532             24577899999998764 889999999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEe
Q psy8397          73 PPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCT  152 (203)
Q Consensus        73 P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~  152 (203)
                      |++|||||||+|||+.+++.+++.|++++++|.|||++||+++                                     
T Consensus       171 p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~-------------------------------------  213 (257)
T PRK10619        171 PEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-------------------------------------  213 (257)
T ss_pred             CCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-------------------------------------
Confidence            9999999999999999999999999999867888888888853                                     


Q ss_pred             ecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         153 IHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       153 ~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                            .+..+||+++++++|++++.|+++++.
T Consensus       214 ------~~~~~~d~i~~l~~G~i~~~~~~~~~~  240 (257)
T PRK10619        214 ------FARHVSSHVIFLHQGKIEEEGAPEQLF  240 (257)
T ss_pred             ------HHHHhcCEEEEEECCEEEEeCCHHHhh
Confidence                  367789999999999999999887654

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.94  E-value=1.9e-26  Score=195.03  Aligned_cols=134  Identities=22%  Similarity=0.352  Sum_probs=111.1

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH----------HHHHHHHHHHc-CCcccccccCCCCCHHHHHHHHHHHHHhcCCCE
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT----------IGLVDDILDTI-GLVLSKHTLCGRLSGGQKKRLSIALELIDNPPI   75 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~v~~~L~~~-~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~v   75 (203)
                      +..+.+|..  .++..+|+.+++..          .+++.++++.+ ++.+..++++.+||||||||++|||||+.+|++
T Consensus        81 ~i~~~~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~i  158 (237)
T PRK11614         81 AVAIVPEGR--RVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRL  158 (237)
T ss_pred             CEEEeccCc--ccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCE
Confidence            455666543  24456788876532          23456677877 577778889999999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecC
Q psy8397          76 MFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQ  155 (203)
Q Consensus        76 LlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~  155 (203)
                      |||||||+|||+.++..+++.|+++.++|.|||++||+++                                        
T Consensus       159 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~----------------------------------------  198 (237)
T PRK11614        159 LLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNAN----------------------------------------  198 (237)
T ss_pred             EEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH----------------------------------------
Confidence            9999999999999999999999999877888888888864                                        


Q ss_pred             chhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         156 PSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       156 ~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                         .+.++||++++|++|++++.|+++++.
T Consensus       199 ---~~~~~~d~i~~l~~G~i~~~~~~~~~~  225 (237)
T PRK11614        199 ---QALKLADRGYVLENGHVVLEDTGDALL  225 (237)
T ss_pred             ---HHHhhCCEEEEEeCCEEEeeCCHHHHh
Confidence               367899999999999999999988764

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.94  E-value=1.6e-26  Score=210.04  Aligned_cols=139  Identities=25%  Similarity=0.416  Sum_probs=122.9

Q ss_pred             CCCceeEEEeeecccccCCCCHhHHHh--------------HHHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHH
Q psy8397           4 SNHGTIWCWQIISAQYSHRISVDDILD--------------TIGLVDDILDTIGLV-LSKHTLCGRLSGGQKKRLSIALE   68 (203)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~v~~~L~~~~L~-~~~~~~v~~LSgGqrqrl~iA~a   68 (203)
                      ..+.+..+||.+...+++++||.++..              +.+++.++|+.+||. ..+++++.++|||||||++||||
T Consensus       361 lR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARA  440 (534)
T COG4172         361 LRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARA  440 (534)
T ss_pred             hhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHH
Confidence            345677889999999999999999763              467899999999997 56899999999999999999999


Q ss_pred             HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCc
Q psy8397          69 LIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGR  147 (203)
Q Consensus        69 L~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  147 (203)
                      |+.+|++++||||||+||-..+..+.++|+.|+++ |.+-+++|||+                                 
T Consensus       441 liLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL---------------------------------  487 (534)
T COG4172         441 LILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDL---------------------------------  487 (534)
T ss_pred             HhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccH---------------------------------
Confidence            99999999999999999999999999999999864 55666666664                                 


Q ss_pred             eEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         148 TIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       148 tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                               . .+..+|++|+||++|+|++.|+.++++
T Consensus       488 ---------~-VvrAl~~~viVm~~GkiVE~G~~~~if  515 (534)
T COG4172         488 ---------A-VVRALCHRVIVMRDGKIVEQGPTEAVF  515 (534)
T ss_pred             ---------H-HHHHhhceEEEEeCCEEeeeCCHHHHh
Confidence                     3 578899999999999999999999886

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.94  E-value=4.2e-26  Score=198.67  Aligned_cols=134  Identities=25%  Similarity=0.318  Sum_probs=112.3

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCC
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP   74 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~   74 (203)
                      ...+.+|.... +....|+.|++..            .+++.++++.+||.+..++++.+||||||||++|||||+.+|+
T Consensus        82 ~i~~~~q~~~~-~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~  160 (279)
T PRK13635         82 QVGMVFQNPDN-QFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPD  160 (279)
T ss_pred             heEEEEeCHHH-hcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence            45677765432 2344688876532            3457889999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEee
Q psy8397          75 IMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTI  153 (203)
Q Consensus        75 vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~  153 (203)
                      +|||||||+|||+.++..+++.|+++.++ |.|||++||+++                                      
T Consensus       161 lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~--------------------------------------  202 (279)
T PRK13635        161 IIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLD--------------------------------------  202 (279)
T ss_pred             EEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHH--------------------------------------
Confidence            99999999999999999999999999865 778888888764                                      


Q ss_pred             cCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         154 HQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       154 h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                           .+. .||+++++++|++++.|+++++.
T Consensus       203 -----~~~-~~d~i~~l~~G~i~~~g~~~~~~  228 (279)
T PRK13635        203 -----EAA-QADRVIVMNKGEILEEGTPEEIF  228 (279)
T ss_pred             -----HHH-cCCEEEEEECCEEEEECCHHHHh
Confidence                 244 59999999999999999987764

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=99.94  E-value=2.6e-26  Score=194.65  Aligned_cols=134  Identities=24%  Similarity=0.417  Sum_probs=113.0

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH-------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCC
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT-------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNP   73 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P   73 (203)
                      +..+++|..  .++..+|+.|++..             ..++.++++.+|+.+..++++++||||||||++||+||+.+|
T Consensus        79 ~i~~~~q~~--~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p  156 (241)
T PRK10895         79 GIGYLPQEA--SIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANP  156 (241)
T ss_pred             CeEEeccCC--cccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCC
Confidence            455666543  24455788775431             235788999999998889999999999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEee
Q psy8397          74 PIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTI  153 (203)
Q Consensus        74 ~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~  153 (203)
                      ++|||||||+|||+.++..+++.+++++++|.|||++||+++                                      
T Consensus       157 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~--------------------------------------  198 (241)
T PRK10895        157 KFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVR--------------------------------------  198 (241)
T ss_pred             CEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHH--------------------------------------
Confidence            999999999999999999999999999867888888888863                                      


Q ss_pred             cCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         154 HQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       154 h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                           .+..+||++++|++|++++.|+++++.
T Consensus       199 -----~~~~~~d~v~~l~~G~i~~~~~~~~~~  225 (241)
T PRK10895        199 -----ETLAVCERAYIVSQGHLIAHGTPTEIL  225 (241)
T ss_pred             -----HHHHhcCEEEEEeCCeEEeeCCHHHHh
Confidence                 367899999999999999999988764

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=99.94  E-value=3.2e-26  Score=194.17  Aligned_cols=133  Identities=26%  Similarity=0.381  Sum_probs=112.3

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH-------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCC
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT-------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNP   73 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P   73 (203)
                      +..+.+|..  .++..+|+.|++..             .+++.++++.+|+....++++.+||||||||++|||||+.+|
T Consensus        83 ~i~~~~q~~--~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p  160 (242)
T PRK11124         83 NVGMVFQQY--NLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEP  160 (242)
T ss_pred             heEEEecCc--cccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence            455666543  34566788886531             335778899999998899999999999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEee
Q psy8397          74 PIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTI  153 (203)
Q Consensus        74 ~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~  153 (203)
                      +++||||||+|||+.++..+++.|+++.++|.|+|++||+++                                      
T Consensus       161 ~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~--------------------------------------  202 (242)
T PRK11124        161 QVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVE--------------------------------------  202 (242)
T ss_pred             CEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--------------------------------------
Confidence            999999999999999999999999999866888888888853                                      


Q ss_pred             cCchhHHHhhcCEEEEEeCCeEEeeCCcccc
Q psy8397         154 HQPSATIFEMVDHLYVIAEGHCVYKGSSANT  184 (203)
Q Consensus       154 h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~  184 (203)
                           .+.++||++++|.+|++++.|+++++
T Consensus       203 -----~~~~~~d~i~~l~~g~i~~~~~~~~~  228 (242)
T PRK11124        203 -----VARKTASRVVYMENGHIVEQGDASCF  228 (242)
T ss_pred             -----HHHHhcCEEEEEECCEEEEeCCHHHh
Confidence                 35678999999999999999987764

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=99.94  E-value=3.5e-26  Score=195.21  Aligned_cols=135  Identities=24%  Similarity=0.342  Sum_probs=113.7

Q ss_pred             CceeEEEeeecccccCCCCHhHHHhH-------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcC
Q psy8397           6 HGTIWCWQIISAQYSHRISVDDILDT-------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDN   72 (203)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~   72 (203)
                      ....+.+|..  .++...|+.+++..             .+++.++++.+|+.+..++.+.+||||||||++||+||+.+
T Consensus        87 ~~i~~v~q~~--~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~  164 (252)
T TIGR03005        87 NKIGMVFQSF--NLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMR  164 (252)
T ss_pred             hCeEEEecCc--ccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHHHHHcC
Confidence            3566777643  34556788776542             23567889999999889999999999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEE
Q psy8397          73 PPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVC  151 (203)
Q Consensus        73 P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~  151 (203)
                      |++|||||||+|||+.++..+++.|+++.++ |.|+|++||+++                                    
T Consensus       165 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~------------------------------------  208 (252)
T TIGR03005       165 PKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMG------------------------------------  208 (252)
T ss_pred             CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH------------------------------------
Confidence            9999999999999999999999999998764 788888888753                                    


Q ss_pred             eecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         152 TIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       152 ~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                             .+..+||++++|++|++++.|+++++.
T Consensus       209 -------~~~~~~d~i~~l~~G~i~~~g~~~~~~  235 (252)
T TIGR03005       209 -------FAREFADRVCFFDKGRIVEQGKPDEIF  235 (252)
T ss_pred             -------HHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence                   367889999999999999999887654

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=99.94  E-value=2.8e-26  Score=191.30  Aligned_cols=107  Identities=28%  Similarity=0.484  Sum_probs=90.3

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCC
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP   74 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~   74 (203)
                      ...+.+|..  .++..+|+.|++..            .+++.++++.+||.+..++++.+||||||||++|||||+.+|+
T Consensus        83 ~i~~~~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~  160 (218)
T cd03255          83 HIGFVFQSF--NLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPK  160 (218)
T ss_pred             cEEEEeecc--ccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCC
Confidence            456666643  34566788886532            2467889999999988899999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCCC
Q psy8397          75 IMFLDEPTTGLDSNSTNQCVAMLKALAR-GGRTIVCTIHQPS  115 (203)
Q Consensus        75 vLlLDEPt~gLD~~~~~~i~~~l~~l~~-~g~tvi~~tH~~~  115 (203)
                      +|||||||+|||+.++..+++.|+++.+ +|+|||++||+++
T Consensus       161 lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~  202 (218)
T cd03255         161 IILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPE  202 (218)
T ss_pred             EEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHH
Confidence            9999999999999999999999999986 4788888888753

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=99.94  E-value=4.7e-26  Score=195.27  Aligned_cols=136  Identities=25%  Similarity=0.392  Sum_probs=110.0

Q ss_pred             ceeEEEeeecccccCCCCHhHHH-------------hHHHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhcC
Q psy8397           7 GTIWCWQIISAQYSHRISVDDIL-------------DTIGLVDDILDTIGLV-LSKHTLCGRLSGGQKKRLSIALELIDN   72 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~v~~~L~~~~L~-~~~~~~v~~LSgGqrqrl~iA~aL~~~   72 (203)
                      ...|.+|.....+...+++.+++             ....++.++++.+++. ...++++.+||||||||++|||||+.+
T Consensus        90 ~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~laral~~~  169 (258)
T PRK11701         90 EWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTH  169 (258)
T ss_pred             ceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHHHhcC
Confidence            45666765432334445554432             1234677889999997 478999999999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEE
Q psy8397          73 PPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVC  151 (203)
Q Consensus        73 P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~  151 (203)
                      |++|||||||+|||+.++..+++.|+++.++ |.|||++||+++                                    
T Consensus       170 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~------------------------------------  213 (258)
T PRK11701        170 PRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA------------------------------------  213 (258)
T ss_pred             CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH------------------------------------
Confidence            9999999999999999999999999998764 778888888753                                    


Q ss_pred             eecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         152 TIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       152 ~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                             .+..+||+++++++|++++.|+++++.
T Consensus       214 -------~~~~~~d~i~~l~~g~i~~~~~~~~~~  240 (258)
T PRK11701        214 -------VARLLAHRLLVMKQGRVVESGLTDQVL  240 (258)
T ss_pred             -------HHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence                   366789999999999999999887764

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=99.94  E-value=3.3e-26  Score=196.59  Aligned_cols=133  Identities=28%  Similarity=0.448  Sum_probs=112.9

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH--------------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHH
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT--------------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIA   66 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA   66 (203)
                      ...|.+|..  .++..+|+.+++..                    ..++.++++.+|+.+..++++++||||||||++||
T Consensus        87 ~i~~~~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la  164 (262)
T PRK09984         87 NTGYIFQQF--NLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIA  164 (262)
T ss_pred             heEEEcccc--ccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHHHH
Confidence            356667643  34456788776531                    23678899999999889999999999999999999


Q ss_pred             HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhC
Q psy8397          67 LELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARG  145 (203)
Q Consensus        67 ~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (203)
                      |||+.+|++|||||||+|||+.++..+.+.|+++.++ |.|||++||+++                              
T Consensus       165 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~------------------------------  214 (262)
T PRK09984        165 RALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVD------------------------------  214 (262)
T ss_pred             HHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH------------------------------
Confidence            9999999999999999999999999999999999753 788888888763                              


Q ss_pred             CceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccc
Q psy8397         146 GRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANT  184 (203)
Q Consensus       146 g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~  184 (203)
                                   .+..+||+++++.+|++++.|+++++
T Consensus       215 -------------~~~~~~d~i~~l~~g~i~~~g~~~~~  240 (262)
T PRK09984        215 -------------YALRYCERIVALRQGHVFYDGSSQQF  240 (262)
T ss_pred             -------------HHHHhCCEEEEEECCEEEEeCCHHHh
Confidence                         36789999999999999999998775

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.94  E-value=6.3e-26  Score=197.68  Aligned_cols=134  Identities=28%  Similarity=0.409  Sum_probs=112.5

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCC
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP   74 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~   74 (203)
                      ...+++|.....+ ...|+.|++..            .+++.++++.+||.+..++++.+|||||+||++||+||+.+|+
T Consensus        85 ~ig~v~q~~~~~~-~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~  163 (282)
T PRK13640         85 KVGIVFQNPDNQF-VGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPK  163 (282)
T ss_pred             heEEEEECHHHhh-ccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCC
Confidence            4567776543223 45788886632            2457889999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEee
Q psy8397          75 IMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTI  153 (203)
Q Consensus        75 vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~  153 (203)
                      +|||||||+|||+.++..+++.|+++.++ |.|||++||+++                                      
T Consensus       164 llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~--------------------------------------  205 (282)
T PRK13640        164 IIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDID--------------------------------------  205 (282)
T ss_pred             EEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH--------------------------------------
Confidence            99999999999999999999999999864 778888888764                                      


Q ss_pred             cCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         154 HQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       154 h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                           .+ ..||++++|++|++++.|+++++.
T Consensus       206 -----~~-~~~d~i~~l~~G~i~~~g~~~~~~  231 (282)
T PRK13640        206 -----EA-NMADQVLVLDDGKLLAQGSPVEIF  231 (282)
T ss_pred             -----HH-HhCCEEEEEECCEEEEeCCHHHHh
Confidence                 24 479999999999999999988765

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=99.94  E-value=3.7e-26  Score=189.89  Aligned_cols=127  Identities=27%  Similarity=0.460  Sum_probs=106.2

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCC
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP   74 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~   74 (203)
                      ...+.+|..  .++..+|+.|++..            .+++.++++.+|+.+..++++.+||||||||++|||||+.+|+
T Consensus        73 ~i~~~~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~  150 (211)
T cd03264          73 RIGYLPQEF--GVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPS  150 (211)
T ss_pred             heEEecCCC--cccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCC
Confidence            345666543  34566788876532            2456788999999988899999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeec
Q psy8397          75 IMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIH  154 (203)
Q Consensus        75 vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h  154 (203)
                      ++||||||+|||+.++..+++.|+++++ +.|||++||+++                                       
T Consensus       151 llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~---------------------------------------  190 (211)
T cd03264         151 ILIVDEPTAGLDPEERIRFRNLLSELGE-DRIVILSTHIVE---------------------------------------  190 (211)
T ss_pred             EEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCHH---------------------------------------
Confidence            9999999999999999999999999875 478888888753                                       


Q ss_pred             CchhHHHhhcCEEEEEeCCeEEeeC
Q psy8397         155 QPSATIFEMVDHLYVIAEGHCVYKG  179 (203)
Q Consensus       155 ~~~~~i~~~~d~v~vl~~G~i~~~g  179 (203)
                          .+.++||++++|++|++++.|
T Consensus       191 ----~~~~~~d~i~~l~~g~i~~~g  211 (211)
T cd03264         191 ----DVESLCNQVAVLNKGKLVFEG  211 (211)
T ss_pred             ----HHHHhCCEEEEEECCEEEecC
Confidence                366789999999999998765

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=99.94  E-value=3.9e-26  Score=190.67  Aligned_cols=131  Identities=28%  Similarity=0.469  Sum_probs=109.6

Q ss_pred             eeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCE
Q psy8397           8 TIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPI   75 (203)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~v   75 (203)
                      ..+.+|.  +.++...|+.+++..            .+++.++++.++|.+..++++.+||||||||++||+||+.+|++
T Consensus        77 i~~v~q~--~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l  154 (220)
T cd03263          77 LGYCPQF--DALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSV  154 (220)
T ss_pred             EEEecCc--CCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCE
Confidence            4556653  234456788776532            24567889999999888999999999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecC
Q psy8397          76 MFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQ  155 (203)
Q Consensus        76 LlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~  155 (203)
                      |||||||+|||+.+++.+++.|+++++ +.|||++||+++                                        
T Consensus       155 lllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~----------------------------------------  193 (220)
T cd03263         155 LLLDEPTSGLDPASRRAIWDLILEVRK-GRSIILTTHSMD----------------------------------------  193 (220)
T ss_pred             EEECCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCHH----------------------------------------
Confidence            999999999999999999999999875 478888888763                                        


Q ss_pred             chhHHHhhcCEEEEEeCCeEEeeCCcccc
Q psy8397         156 PSATIFEMVDHLYVIAEGHCVYKGSSANT  184 (203)
Q Consensus       156 ~~~~i~~~~d~v~vl~~G~i~~~g~~~~~  184 (203)
                         .+..+||+++++++|++++.|+++++
T Consensus       194 ---~~~~~~d~i~~l~~g~i~~~~~~~~~  219 (220)
T cd03263         194 ---EAEALCDRIAIMSDGKLRCIGSPQEL  219 (220)
T ss_pred             ---HHHHhcCEEEEEECCEEEecCCHHHc
Confidence               36778999999999999999987653

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=99.94  E-value=1.6e-26  Score=191.85  Aligned_cols=124  Identities=25%  Similarity=0.426  Sum_probs=109.6

Q ss_pred             ccCCCCHhHHHh------------HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Q psy8397          19 YSHRISVDDILD------------TIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLD   86 (203)
Q Consensus        19 ~~~~~~~~~~~~------------~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD   86 (203)
                      ++..+||.++..            .+++++.++..+||..+.++.+++|||||||||++||+|+.+-+||+||||+++||
T Consensus        82 LFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALd  161 (231)
T COG3840          82 LFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALD  161 (231)
T ss_pred             cchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhhcC
Confidence            345588888653            47789999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcC
Q psy8397          87 SNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVD  165 (203)
Q Consensus        87 ~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d  165 (203)
                      |.-|.++...+.++..+ +.|++|+||.++                                           .+..+++
T Consensus       162 P~LR~eMl~Lv~~l~~E~~~TllmVTH~~~-------------------------------------------Da~~ia~  198 (231)
T COG3840         162 PALRAEMLALVSQLCDERKMTLLMVTHHPE-------------------------------------------DAARIAD  198 (231)
T ss_pred             HHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-------------------------------------------HHHHhhh
Confidence            99999999999999854 666666666654                                           3788999


Q ss_pred             EEEEEeCCeEEeeCCcccch
Q psy8397         166 HLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       166 ~v~vl~~G~i~~~g~~~~~~  185 (203)
                      +++++++|+|.+.|+.+++.
T Consensus       199 ~~~fl~~Gri~~~g~~~~~~  218 (231)
T COG3840         199 RVVFLDNGRIAAQGSTQELL  218 (231)
T ss_pred             ceEEEeCCEEEeeccHHHHh
Confidence            99999999999999988765

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=99.94  E-value=5.4e-26  Score=193.95  Aligned_cols=111  Identities=27%  Similarity=0.479  Sum_probs=98.4

Q ss_pred             HHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEE
Q psy8397          32 IGLVDDILDTIGLV-LSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVC  109 (203)
Q Consensus        32 ~~~v~~~L~~~~L~-~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~  109 (203)
                      ..++.++++.+++. ...++++.+||||||||++|||||+.+|++|||||||+|||+.+++.+++.|+++.++ |.|||+
T Consensus       125 ~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~  204 (253)
T TIGR02323       125 RAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVII  204 (253)
T ss_pred             HHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence            35678899999997 4789999999999999999999999999999999999999999999999999998754 778888


Q ss_pred             EecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         110 TIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       110 ~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                      +||+++                                           .+..+||++++|++|++++.|+++++.
T Consensus       205 vsH~~~-------------------------------------------~~~~~~d~~~~l~~G~i~~~~~~~~~~  237 (253)
T TIGR02323       205 VTHDLG-------------------------------------------VARLLAQRLLVMQQGRVVESGLTDQVL  237 (253)
T ss_pred             EeCCHH-------------------------------------------HHHHhcCEEEEEECCEEEEECCHHHHh
Confidence            888753                                           367789999999999999999877653

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.94  E-value=4.1e-26  Score=189.41  Aligned_cols=123  Identities=30%  Similarity=0.435  Sum_probs=101.5

Q ss_pred             eeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCE
Q psy8397           8 TIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPI   75 (203)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~v   75 (203)
                      ..|.+|.... +....|+.+++..            .+++.++++.+++.+..++++.+||||||||++|||||+.+|++
T Consensus        77 i~~~~q~~~~-~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~l  155 (211)
T cd03225          77 VGLVFQNPDD-QFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDI  155 (211)
T ss_pred             ceEEecChhh-hcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence            4566654321 2345788776532            23567789999999888999999999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecC
Q psy8397          76 MFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQ  155 (203)
Q Consensus        76 LlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~  155 (203)
                      |||||||+|||+.++..+++.|++++++|+|||++||+++                                        
T Consensus       156 lllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~----------------------------------------  195 (211)
T cd03225         156 LLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLD----------------------------------------  195 (211)
T ss_pred             EEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH----------------------------------------
Confidence            9999999999999999999999999866788888888753                                        


Q ss_pred             chhHHHhhcCEEEEEeCCe
Q psy8397         156 PSATIFEMVDHLYVIAEGH  174 (203)
Q Consensus       156 ~~~~i~~~~d~v~vl~~G~  174 (203)
                         .+..+||++++|++|+
T Consensus       196 ---~~~~~~d~i~~l~~G~  211 (211)
T cd03225         196 ---LLLELADRVIVLEDGK  211 (211)
T ss_pred             ---HHHHhCCEEEEEeCCC
Confidence               3677899999999885

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=99.94  E-value=4.8e-26  Score=196.27  Aligned_cols=134  Identities=27%  Similarity=0.375  Sum_probs=112.6

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH----------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHh
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT----------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELI   70 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~   70 (203)
                      ...+++|..  .++..+++.++...                .+++.++++.+|+.+..++++.+||||||||++|||||+
T Consensus        82 ~i~~v~q~~--~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~  159 (265)
T PRK10253         82 RIGLLAQNA--TTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLA  159 (265)
T ss_pred             heEEeeccC--cCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHh
Confidence            355666643  23445677775431                235778999999998899999999999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceE
Q psy8397          71 DNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTI  149 (203)
Q Consensus        71 ~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tv  149 (203)
                      .+|++|||||||+|||+.++..+++.|+++.++ |.|||++||+++                                  
T Consensus       160 ~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~----------------------------------  205 (265)
T PRK10253        160 QETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLN----------------------------------  205 (265)
T ss_pred             cCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH----------------------------------
Confidence            999999999999999999999999999999864 778888888753                                  


Q ss_pred             EEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         150 VCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       150 i~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                               .+.++||++++|.+|++++.|+++++.
T Consensus       206 ---------~~~~~~d~i~~l~~G~i~~~g~~~~~~  232 (265)
T PRK10253        206 ---------QACRYASHLIALREGKIVAQGAPKEIV  232 (265)
T ss_pred             ---------HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence                     478899999999999999999988764

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=99.94  E-value=4.3e-26  Score=189.63  Aligned_cols=123  Identities=24%  Similarity=0.422  Sum_probs=103.4

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCC
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP   74 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~   74 (203)
                      ...+.+|..  .++..+|+.+++..            .+++.++++.+++.+..++++.+||||||||++||+||+.+|+
T Consensus        80 ~i~~~~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~  157 (214)
T TIGR02673        80 RIGVVFQDF--RLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPP  157 (214)
T ss_pred             heEEEecCh--hhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCC
Confidence            345556542  34556788886532            3467789999999988899999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeec
Q psy8397          75 IMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIH  154 (203)
Q Consensus        75 vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h  154 (203)
                      +|||||||+|||+.++..+++.|+++.++|.|||++||+++                                       
T Consensus       158 lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~---------------------------------------  198 (214)
T TIGR02673       158 LLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLS---------------------------------------  198 (214)
T ss_pred             EEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH---------------------------------------
Confidence            99999999999999999999999998866788888888864                                       


Q ss_pred             CchhHHHhhcCEEEEEeCCe
Q psy8397         155 QPSATIFEMVDHLYVIAEGH  174 (203)
Q Consensus       155 ~~~~~i~~~~d~v~vl~~G~  174 (203)
                          .+..+||++++|++|+
T Consensus       199 ----~~~~~~d~i~~l~~G~  214 (214)
T TIGR02673       199 ----LVDRVAHRVIILDDGR  214 (214)
T ss_pred             ----HHHHhcCEEEEecCCC
Confidence                3677899999999885

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=99.94  E-value=8e-26  Score=188.58  Aligned_cols=129  Identities=24%  Similarity=0.338  Sum_probs=109.1

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCC
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP   74 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~   74 (203)
                      ...|.+|..  .++..+|+.|+...            .+++.++++.+|+.+..++++.+||||||||++||++|+.+|+
T Consensus        71 ~i~~v~q~~--~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~  148 (213)
T TIGR01277        71 PVSMLFQEN--NLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNP  148 (213)
T ss_pred             ceEEEeccC--ccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCC
Confidence            455666643  34566788876531            2357789999999988999999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEee
Q psy8397          75 IMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTI  153 (203)
Q Consensus        75 vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~  153 (203)
                      +++|||||+|||+.++..+++.|+++.++ |.|||++||+++                                      
T Consensus       149 llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~--------------------------------------  190 (213)
T TIGR01277       149 ILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLS--------------------------------------  190 (213)
T ss_pred             EEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--------------------------------------
Confidence            99999999999999999999999998754 778888888753                                      


Q ss_pred             cCchhHHHhhcCEEEEEeCCeEEeeCC
Q psy8397         154 HQPSATIFEMVDHLYVIAEGHCVYKGS  180 (203)
Q Consensus       154 h~~~~~i~~~~d~v~vl~~G~i~~~g~  180 (203)
                           .+.++||++++|++|++++.|+
T Consensus       191 -----~~~~~~d~v~~l~~g~i~~~~~  212 (213)
T TIGR01277       191 -----DARAIASQIAVVSQGKIKVVSD  212 (213)
T ss_pred             -----HHHhhcCeEEEEECCeEEEecC
Confidence                 3677899999999999998875

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=99.94  E-value=7.1e-26  Score=189.52  Aligned_cols=130  Identities=27%  Similarity=0.373  Sum_probs=105.4

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH----------H---HH-HHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhc
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT----------I---GL-VDDILDTIGLV-LSKHTLCGRLSGGQKKRLSIALELID   71 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~----------~---~~-v~~~L~~~~L~-~~~~~~v~~LSgGqrqrl~iA~aL~~   71 (203)
                      ...|.+|.....+...+|+.+++..          .   +. +.++++.+++. ...++++.+||||||||++|||||+.
T Consensus        83 ~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~  162 (228)
T cd03257          83 EIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALAL  162 (228)
T ss_pred             cEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhc
Confidence            4566676543234556888876531          0   11 24678899995 67899999999999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEE
Q psy8397          72 NPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIV  150 (203)
Q Consensus        72 ~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi  150 (203)
                      +|++|||||||+|||+.++..+++.|+++.++ |.|||++||+++                                   
T Consensus       163 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-----------------------------------  207 (228)
T cd03257         163 NPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLG-----------------------------------  207 (228)
T ss_pred             CCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-----------------------------------
Confidence            99999999999999999999999999999865 788888888753                                   


Q ss_pred             EeecCchhHHHhhcCEEEEEeCCeEEeeC
Q psy8397         151 CTIHQPSATIFEMVDHLYVIAEGHCVYKG  179 (203)
Q Consensus       151 ~~~h~~~~~i~~~~d~v~vl~~G~i~~~g  179 (203)
                              .+..+||++++|++|+++..|
T Consensus       208 --------~~~~~~d~i~~l~~G~i~~~g  228 (228)
T cd03257         208 --------VVAKIADRVAVMYAGKIVEEG  228 (228)
T ss_pred             --------HHHHhcCeEEEEeCCEEEecC
Confidence                    366789999999999998654

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.94  E-value=5.2e-26  Score=212.65  Aligned_cols=134  Identities=22%  Similarity=0.332  Sum_probs=115.9

Q ss_pred             ceeEEEeeecccccCCCCHhHHHh--------HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILD--------TIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFL   78 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlL   78 (203)
                      +..|.+|..  .++..+|+.|++.        ..+++.++++.+||....++++++|||||||||+||+||+.+|++|||
T Consensus        87 ~i~~v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllL  164 (510)
T PRK15439         87 GIYLVPQEP--LLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILIL  164 (510)
T ss_pred             CEEEEeccC--ccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence            455777643  3456789988753        245788899999999889999999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchh
Q psy8397          79 DEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSA  158 (203)
Q Consensus        79 DEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~  158 (203)
                      ||||+|||+.++..+++.|++++++|.|||++||+++                                           
T Consensus       165 DEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-------------------------------------------  201 (510)
T PRK15439        165 DEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLP-------------------------------------------  201 (510)
T ss_pred             ECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-------------------------------------------
Confidence            9999999999999999999999877888888888864                                           


Q ss_pred             HHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         159 TIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       159 ~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                      .+..+||++++|++|++++.|+++++.
T Consensus       202 ~~~~~~d~i~~l~~G~i~~~g~~~~~~  228 (510)
T PRK15439        202 EIRQLADRISVMRDGTIALSGKTADLS  228 (510)
T ss_pred             HHHHhCCEEEEEECCEEEEecChHHcC
Confidence            367899999999999999999987764

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.94  E-value=6.7e-26  Score=194.87  Aligned_cols=134  Identities=24%  Similarity=0.368  Sum_probs=112.6

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHh----
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELI----   70 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~----   70 (203)
                      ...+.+|...  +...+|+.|++..            .+++.++++.+|+.+..++++++||||||||++||+||+    
T Consensus        77 ~i~~~~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~  154 (258)
T PRK13548         77 RRAVLPQHSS--LSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWE  154 (258)
T ss_pred             heEEEccCCc--CCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccc
Confidence            3556666432  3355788886532            235778999999998899999999999999999999999    


Q ss_pred             --cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCc
Q psy8397          71 --DNPPIMFLDEPTTGLDSNSTNQCVAMLKALA-RGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGR  147 (203)
Q Consensus        71 --~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~-~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  147 (203)
                        .+|++|||||||+|||+.++..+.+.|+++. ++|.|||++||+++                                
T Consensus       155 ~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~--------------------------------  202 (258)
T PRK13548        155 PDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLN--------------------------------  202 (258)
T ss_pred             cCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH--------------------------------
Confidence              5999999999999999999999999999997 56888888888864                                


Q ss_pred             eEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         148 TIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       148 tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                                 .+..+||++++|++|++++.|+++++.
T Consensus       203 -----------~~~~~~d~i~~l~~G~i~~~~~~~~~~  229 (258)
T PRK13548        203 -----------LAARYADRIVLLHQGRLVADGTPAEVL  229 (258)
T ss_pred             -----------HHHHhcCEEEEEECCEEEeeCCHHHHh
Confidence                       367899999999999999999987764

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.94  E-value=4.4e-26  Score=218.13  Aligned_cols=136  Identities=24%  Similarity=0.324  Sum_probs=115.0

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH-------------HHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhcC
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT-------------IGLVDDILDTIGLV-LSKHTLCGRLSGGQKKRLSIALELIDN   72 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~v~~~L~~~~L~-~~~~~~v~~LSgGqrqrl~iA~aL~~~   72 (203)
                      ...|.||.....+++.+|+.+++..             .+++.++++.+||. ...++++.+|||||||||+|||||+.+
T Consensus       402 ~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~  481 (623)
T PRK10261        402 DIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALN  481 (623)
T ss_pred             CeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcC
Confidence            4667777643335667888876421             24677899999996 678999999999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEE
Q psy8397          73 PPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVC  151 (203)
Q Consensus        73 P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~  151 (203)
                      |++|||||||+|||+.++..+++.|++++++ |.|||++||+++                                    
T Consensus       482 p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~------------------------------------  525 (623)
T PRK10261        482 PKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMA------------------------------------  525 (623)
T ss_pred             CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH------------------------------------
Confidence            9999999999999999999999999999864 778888887754                                    


Q ss_pred             eecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         152 TIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       152 ~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                             .+..+||++++|++|++++.|++++++
T Consensus       526 -------~v~~~~dri~vl~~G~iv~~g~~~~i~  552 (623)
T PRK10261        526 -------VVERISHRVAVMYLGQIVEIGPRRAVF  552 (623)
T ss_pred             -------HHHHhCCEEEEEECCEEEEecCHHHHh
Confidence                   467899999999999999999988764

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.94  E-value=6.5e-26  Score=211.31  Aligned_cols=134  Identities=25%  Similarity=0.376  Sum_probs=114.5

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH----------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHh
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT----------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELI   70 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~   70 (203)
                      ...+.+|..  .++..+|+.|++..                ++++.++++.+||.+..++++++||||||||++||+||+
T Consensus        80 ~i~~v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~  157 (501)
T PRK10762         80 GIGIIHQEL--NLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLS  157 (501)
T ss_pred             CEEEEEcch--hccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHh
Confidence            456777653  34566788875421                246788999999998899999999999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEE
Q psy8397          71 DNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIV  150 (203)
Q Consensus        71 ~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi  150 (203)
                      .+|++|||||||+|||+.++..+++.|++++++|.|||++||+++                                   
T Consensus       158 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~-----------------------------------  202 (501)
T PRK10762        158 FESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLK-----------------------------------  202 (501)
T ss_pred             cCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-----------------------------------
Confidence            999999999999999999999999999999866788888888864                                   


Q ss_pred             EeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         151 CTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       151 ~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                              .+..+||++++|++|+++..|+++++.
T Consensus       203 --------~~~~~~d~i~~l~~G~i~~~~~~~~~~  229 (501)
T PRK10762        203 --------EIFEICDDVTVFRDGQFIAEREVADLT  229 (501)
T ss_pred             --------HHHHhCCEEEEEeCCEEEEecCcCcCC
Confidence                    467899999999999999999988764

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=99.94  E-value=8.8e-26  Score=194.97  Aligned_cols=131  Identities=26%  Similarity=0.322  Sum_probs=110.3

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDE   80 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDE   80 (203)
                      ...|.+|..  .++..+|+.|++..      .+++.++++.+||.+..++++.+||||||||++|||+|+.+|++|||||
T Consensus        82 ~i~~v~q~~--~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDE  159 (257)
T PRK11247         82 DTRLMFQDA--RLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDE  159 (257)
T ss_pred             ceEEEecCc--cCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence            345666643  34456789887642      4567889999999988999999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhH
Q psy8397          81 PTTGLDSNSTNQCVAMLKALAR-GGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSAT  159 (203)
Q Consensus        81 Pt~gLD~~~~~~i~~~l~~l~~-~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~  159 (203)
                      ||+|||+.++..+.+.|+++.+ .|.|||++||+++                                           .
T Consensus       160 Pt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~-------------------------------------------~  196 (257)
T PRK11247        160 PLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVS-------------------------------------------E  196 (257)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-------------------------------------------H
Confidence            9999999999999999999865 4778888887753                                           3


Q ss_pred             HHhhcCEEEEEeCCeEEeeCCcc
Q psy8397         160 IFEMVDHLYVIAEGHCVYKGSSA  182 (203)
Q Consensus       160 i~~~~d~v~vl~~G~i~~~g~~~  182 (203)
                      +..+||++++|.+|++++.|+.+
T Consensus       197 ~~~~~d~i~~l~~G~i~~~~~~~  219 (257)
T PRK11247        197 AVAMADRVLLIEEGKIGLDLTVD  219 (257)
T ss_pred             HHHhCCEEEEEECCEEEeecccc
Confidence            67889999999999999887643

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=99.94  E-value=6.4e-26  Score=190.16  Aligned_cols=132  Identities=24%  Similarity=0.413  Sum_probs=111.8

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH--------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT--------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFL   78 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlL   78 (203)
                      ...+.+|..  .++..+|+.++...        ..++.++++.+|+.+..++++.+|||||+||++||||++.+|++|+|
T Consensus        71 ~~~~~~q~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llll  148 (223)
T TIGR03740        71 KIGSLIESP--PLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLIL  148 (223)
T ss_pred             cEEEEcCCC--CccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            344555532  34456788887542        34678899999999989999999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchh
Q psy8397          79 DEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSA  158 (203)
Q Consensus        79 DEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~  158 (203)
                      ||||+|||+.++..+++.|+++.++|.|||++||+++                                           
T Consensus       149 DEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~-------------------------------------------  185 (223)
T TIGR03740       149 DEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILS-------------------------------------------  185 (223)
T ss_pred             CCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-------------------------------------------
Confidence            9999999999999999999999866788888888853                                           


Q ss_pred             HHHhhcCEEEEEeCCeEEeeCCccc
Q psy8397         159 TIFEMVDHLYVIAEGHCVYKGSSAN  183 (203)
Q Consensus       159 ~i~~~~d~v~vl~~G~i~~~g~~~~  183 (203)
                      .+..+||++++|++|++++.|++.+
T Consensus       186 ~~~~~~d~i~~l~~g~i~~~~~~~~  210 (223)
T TIGR03740       186 EVQQLADHIGIISEGVLGYQGKINK  210 (223)
T ss_pred             HHHHhcCEEEEEeCCEEEEecChhh
Confidence            3678999999999999999998764

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=99.94  E-value=7.3e-26  Score=193.85  Aligned_cols=133  Identities=26%  Similarity=0.406  Sum_probs=111.8

Q ss_pred             eeEEEeeecccccCCCCHhHHHhH----------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhc
Q psy8397           8 TIWCWQIISAQYSHRISVDDILDT----------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELID   71 (203)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~   71 (203)
                      ..+.+|..  .+...+|+.+++..                .+++.++++.+++.+..++++.+||||||||++||+||+.
T Consensus        77 i~~~~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~  154 (256)
T TIGR03873        77 VALVEQDS--DTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQ  154 (256)
T ss_pred             eEEecccC--ccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhc
Confidence            44555543  23345677776521                2356788999999988999999999999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEE
Q psy8397          72 NPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVC  151 (203)
Q Consensus        72 ~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~  151 (203)
                      +|+++||||||+|||+.++..+.+.|+++.++|.|||++||+++                                    
T Consensus       155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~------------------------------------  198 (256)
T TIGR03873       155 EPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLN------------------------------------  198 (256)
T ss_pred             CCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH------------------------------------
Confidence            99999999999999999999999999999866788888888864                                    


Q ss_pred             eecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         152 TIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       152 ~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                             .+.++||++++|++|++++.|+++++.
T Consensus       199 -------~~~~~~d~i~~l~~G~i~~~g~~~~~~  225 (256)
T TIGR03873       199 -------LAASYCDHVVVLDGGRVVAAGPPREVL  225 (256)
T ss_pred             -------HHHHhCCEEEEEeCCCEEEecCHHHhh
Confidence                   367899999999999999999988764

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=99.94  E-value=6e-26  Score=196.06  Aligned_cols=136  Identities=24%  Similarity=0.349  Sum_probs=110.2

Q ss_pred             ceeEEEeeecccccCCCCHhHHHh-------------HHHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhcC
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILD-------------TIGLVDDILDTIGLV-LSKHTLCGRLSGGQKKRLSIALELIDN   72 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~v~~~L~~~~L~-~~~~~~v~~LSgGqrqrl~iA~aL~~~   72 (203)
                      ...+++|.....+...+|+.+++.             ..+++.++++.+|+. ...++++.+||||||||++||+||+.+
T Consensus        88 ~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~  167 (267)
T PRK15112         88 RIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILR  167 (267)
T ss_pred             cEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhC
Confidence            456667654322344456655432             124577899999994 677889999999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEE
Q psy8397          73 PPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVC  151 (203)
Q Consensus        73 P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~  151 (203)
                      |++|||||||+|||+.+++.+++.|+++.++ |.|||++||+++                                    
T Consensus       168 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~------------------------------------  211 (267)
T PRK15112        168 PKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLG------------------------------------  211 (267)
T ss_pred             CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH------------------------------------
Confidence            9999999999999999999999999999764 778888888753                                    


Q ss_pred             eecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         152 TIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       152 ~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                             .+..+||++++|++|++++.|+++++.
T Consensus       212 -------~~~~~~d~i~~l~~G~i~~~~~~~~~~  238 (267)
T PRK15112        212 -------MMKHISDQVLVMHQGEVVERGSTADVL  238 (267)
T ss_pred             -------HHHHhcCEEEEEECCEEEecCCHHHHh
Confidence                   367889999999999999999877654

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.94  E-value=5.8e-26  Score=198.17  Aligned_cols=135  Identities=22%  Similarity=0.324  Sum_probs=109.9

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhcCC
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLV-LSKHTLCGRLSGGQKKRLSIALELIDNP   73 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~-~~~~~~v~~LSgGqrqrl~iA~aL~~~P   73 (203)
                      ...|.+|.....++ ..|+.+++..            .+++.++++.++|. ...++++++||||||||++|||||+.+|
T Consensus        91 ~i~~v~q~~~~~~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~~~p  169 (289)
T PRK13645         91 EIGLVFQFPEYQLF-QETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDG  169 (289)
T ss_pred             cEEEEEeCcchhhh-hhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCC
Confidence            45666765322222 3477765432            23567789999994 6789999999999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEe
Q psy8397          74 PIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCT  152 (203)
Q Consensus        74 ~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~  152 (203)
                      ++|||||||+|||+.++..+++.|+++.++ |+|||++||+++                                     
T Consensus       170 ~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~-------------------------------------  212 (289)
T PRK13645        170 NTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMD-------------------------------------  212 (289)
T ss_pred             CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-------------------------------------
Confidence            999999999999999999999999998754 778888888753                                     


Q ss_pred             ecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         153 IHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       153 ~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                            .+.++||++++|++|++++.|+++++.
T Consensus       213 ------~~~~~~d~i~~l~~G~i~~~g~~~~~~  239 (289)
T PRK13645        213 ------QVLRIADEVIVMHEGKVISIGSPFEIF  239 (289)
T ss_pred             ------HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence                  367899999999999999999887764

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.94  E-value=5.9e-26  Score=211.80  Aligned_cols=109  Identities=24%  Similarity=0.380  Sum_probs=99.7

Q ss_pred             HHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEe
Q psy8397          33 GLVDDILDTIGLV-LSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTI  111 (203)
Q Consensus        33 ~~v~~~L~~~~L~-~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~t  111 (203)
                      +++.++++.+++. +..++++++|||||||||+||+||+.+|++|||||||+|||+.+++.+++.|++++++|.|||++|
T Consensus       383 ~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~s  462 (506)
T PRK13549        383 KTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVIS  462 (506)
T ss_pred             HHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEEC
Confidence            3577899999996 578999999999999999999999999999999999999999999999999999987788888888


Q ss_pred             cCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccc
Q psy8397         112 HQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANT  184 (203)
Q Consensus       112 H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~  184 (203)
                      |+++                                           .+.++||++++|.+|++++.|+++++
T Consensus       463 Hd~~-------------------------------------------~~~~~~d~v~~l~~G~i~~~~~~~~~  492 (506)
T PRK13549        463 SELP-------------------------------------------EVLGLSDRVLVMHEGKLKGDLINHNL  492 (506)
T ss_pred             CCHH-------------------------------------------HHHHhCCEEEEEECCEEEEEeccccC
Confidence            8864                                           46789999999999999999988876

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.94  E-value=4.3e-26  Score=218.20  Aligned_cols=136  Identities=23%  Similarity=0.353  Sum_probs=114.5

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH-------------HHHHHHHHHHcCCcc---cccccCCCCCHHHHHHHHHHHHHh
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT-------------IGLVDDILDTIGLVL---SKHTLCGRLSGGQKKRLSIALELI   70 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~v~~~L~~~~L~~---~~~~~v~~LSgGqrqrl~iA~aL~   70 (203)
                      ...+.+|.....++..+||.+++..             ++++.++++.+||.+   ..++++.+|||||||||+||+||+
T Consensus       105 ~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA~AL~  184 (623)
T PRK10261        105 DMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALS  184 (623)
T ss_pred             CEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHHHHHHHHHHh
Confidence            4567777654345566888886531             246788999999953   578999999999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceE
Q psy8397          71 DNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTI  149 (203)
Q Consensus        71 ~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tv  149 (203)
                      .+|++|||||||+|||+.++..++++|++++++ |.|||++||+++                                  
T Consensus       185 ~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~----------------------------------  230 (623)
T PRK10261        185 CRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMG----------------------------------  230 (623)
T ss_pred             CCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH----------------------------------
Confidence            999999999999999999999999999999854 778888888764                                  


Q ss_pred             EEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         150 VCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       150 i~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                               .+..+||+|++|++|++++.|+++++.
T Consensus       231 ---------~~~~~adri~vl~~G~i~~~g~~~~~~  257 (623)
T PRK10261        231 ---------VVAEIADRVLVMYQGEAVETGSVEQIF  257 (623)
T ss_pred             ---------HHHHhCCEEEEeeCCeecccCCHHHhh
Confidence                     467899999999999999999887653

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=99.94  E-value=6.6e-26  Score=195.43  Aligned_cols=134  Identities=23%  Similarity=0.405  Sum_probs=111.9

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH----------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHh
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT----------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELI   70 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~   70 (203)
                      ...+.+|..  .+...+|+.+++..                .+++.++++.+++.+..++++++||||||||++||+||+
T Consensus        86 ~i~~v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~  163 (265)
T PRK10575         86 KVAYLPQQL--PAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVA  163 (265)
T ss_pred             heEEeccCC--CCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHh
Confidence            345556542  23455777775431                235788999999998899999999999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceE
Q psy8397          71 DNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTI  149 (203)
Q Consensus        71 ~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tv  149 (203)
                      .+|++|||||||+|||+.+++.+++.|+++.++ |.|||++||+++                                  
T Consensus       164 ~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~----------------------------------  209 (265)
T PRK10575        164 QDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDIN----------------------------------  209 (265)
T ss_pred             cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH----------------------------------
Confidence            999999999999999999999999999999764 788888888764                                  


Q ss_pred             EEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         150 VCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       150 i~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                               .+.++||++++|.+|++++.|+++++.
T Consensus       210 ---------~i~~~~d~i~~l~~G~i~~~~~~~~~~  236 (265)
T PRK10575        210 ---------MAARYCDYLVALRGGEMIAQGTPAELM  236 (265)
T ss_pred             ---------HHHHhCCEEEEEECCeEEEecCHHHhc
Confidence                     367899999999999999999887764

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.94  E-value=7e-26  Score=211.31  Aligned_cols=134  Identities=22%  Similarity=0.305  Sum_probs=113.4

Q ss_pred             ceeEEEeeecccccCCCCHhHHHh-------------------HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHH
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILD-------------------TIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIAL   67 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~   67 (203)
                      +..+.+|..  .++..+|+.|++.                   ..+++.++++.+||.+..++++++|||||||||+||+
T Consensus        81 ~i~~v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~  158 (510)
T PRK09700         81 GIGIIYQEL--SVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAK  158 (510)
T ss_pred             CeEEEeecc--cccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHH
Confidence            355666643  2345577776542                   1346788999999998899999999999999999999


Q ss_pred             HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCc
Q psy8397          68 ELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGR  147 (203)
Q Consensus        68 aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  147 (203)
                      ||+.+|++|||||||+|||+.++..+++.|++++++|.|||++||+++                                
T Consensus       159 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~--------------------------------  206 (510)
T PRK09700        159 TLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLA--------------------------------  206 (510)
T ss_pred             HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH--------------------------------
Confidence            999999999999999999999999999999999877888888888864                                


Q ss_pred             eEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         148 TIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       148 tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                                 .+..+||++++|++|++++.|+++++.
T Consensus       207 -----------~~~~~~d~v~~l~~G~i~~~g~~~~~~  233 (510)
T PRK09700        207 -----------EIRRICDRYTVMKDGSSVCSGMVSDVS  233 (510)
T ss_pred             -----------HHHHhCCEEEEEECCEEeeecchhhCC
Confidence                       467899999999999999999988764

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=99.94  E-value=1.4e-25  Score=189.50  Aligned_cols=129  Identities=21%  Similarity=0.322  Sum_probs=107.3

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCC
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP   74 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~   74 (203)
                      ...+.+|..  .++..+|+.+++..            .+++.++++.+|+.+..++++.+||||||||++||+||+.+|+
T Consensus        88 ~i~~v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~  165 (233)
T PRK11629         88 KLGFIYQFH--HLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPR  165 (233)
T ss_pred             cEEEEecCc--ccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence            456777643  34566788887532            3467889999999988999999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEee
Q psy8397          75 IMFLDEPTTGLDSNSTNQCVAMLKALAR-GGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTI  153 (203)
Q Consensus        75 vLlLDEPt~gLD~~~~~~i~~~l~~l~~-~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~  153 (203)
                      +|||||||+|||+.++..+++.|+++++ +|.|||++||+++                                      
T Consensus       166 lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~--------------------------------------  207 (233)
T PRK11629        166 LVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQ--------------------------------------  207 (233)
T ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH--------------------------------------
Confidence            9999999999999999999999999975 4788888888764                                      


Q ss_pred             cCchhHHHhhcCEEEEEeCCeEEeeCCc
Q psy8397         154 HQPSATIFEMVDHLYVIAEGHCVYKGSS  181 (203)
Q Consensus       154 h~~~~~i~~~~d~v~vl~~G~i~~~g~~  181 (203)
                           .+.. ++++++|.+|++++.++.
T Consensus       208 -----~~~~-~~~~~~l~~G~i~~~~~~  229 (233)
T PRK11629        208 -----LAKR-MSRQLEMRDGRLTAELSL  229 (233)
T ss_pred             -----HHHh-hCEEEEEECCEEEEEecc
Confidence                 2444 469999999999987753

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.94  E-value=8.1e-26  Score=210.87  Aligned_cols=134  Identities=22%  Similarity=0.293  Sum_probs=114.5

Q ss_pred             ceeEEEeeecccccCCCCHhHHHh---------------HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhc
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILD---------------TIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELID   71 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~   71 (203)
                      ...+.+|..  .++..+|+.|++.               ..+++.++++.+|+....++++++||||||||++||+||+.
T Consensus        83 ~i~~v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~  160 (506)
T PRK13549         83 GIAIIHQEL--ALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNK  160 (506)
T ss_pred             CeEEEEecc--ccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhc
Confidence            456777653  3455678877542               12467889999999988999999999999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEE
Q psy8397          72 NPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVC  151 (203)
Q Consensus        72 ~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~  151 (203)
                      +|++|||||||+|||+.++..+++.|++++++|.|||++||+++                                    
T Consensus       161 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~------------------------------------  204 (506)
T PRK13549        161 QARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLN------------------------------------  204 (506)
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH------------------------------------
Confidence            99999999999999999999999999999867888888888864                                    


Q ss_pred             eecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         152 TIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       152 ~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                             .+..+||++++|++|++++.|+++++.
T Consensus       205 -------~~~~~~d~v~~l~~G~i~~~~~~~~~~  231 (506)
T PRK13549        205 -------EVKAISDTICVIRDGRHIGTRPAAGMT  231 (506)
T ss_pred             -------HHHHhcCEEEEEECCEEeeecccccCC
Confidence                   367899999999999999999988764

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=99.94  E-value=8.9e-26  Score=191.02  Aligned_cols=133  Identities=29%  Similarity=0.415  Sum_probs=110.2

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCC
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP   74 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~   74 (203)
                      ...+.+|..  .++..+|+.+++..            .+++.++++.+|+.+..++++.+||||||||++|||||+.+|+
T Consensus        75 ~i~~~~q~~--~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~  152 (236)
T TIGR03864        75 RLGVVFQQP--TLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPA  152 (236)
T ss_pred             hEEEeCCCC--CCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence            345666542  23455788876532            2356788999999988999999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEee
Q psy8397          75 IMFLDEPTTGLDSNSTNQCVAMLKALAR-GGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTI  153 (203)
Q Consensus        75 vLlLDEPt~gLD~~~~~~i~~~l~~l~~-~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~  153 (203)
                      ++||||||+|||+.++..+++.|+++++ +|.|||++||+++                                      
T Consensus       153 llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~--------------------------------------  194 (236)
T TIGR03864       153 LLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVD--------------------------------------  194 (236)
T ss_pred             EEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChh--------------------------------------
Confidence            9999999999999999999999999975 4788888888864                                      


Q ss_pred             cCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         154 HQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       154 h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                           .+. .||++++|++|+++..|+++++.
T Consensus       195 -----~~~-~~d~i~~l~~G~i~~~~~~~~~~  220 (236)
T TIGR03864       195 -----EIE-ADDRLVVLHRGRVLADGAAAELR  220 (236)
T ss_pred             -----hHh-hCCEEEEEeCCeEEEeCCHHHHH
Confidence                 244 49999999999999999887654

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=99.94  E-value=1e-25  Score=190.93  Aligned_cols=134  Identities=22%  Similarity=0.337  Sum_probs=112.8

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCC
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP   74 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~   74 (203)
                      ...+++|..  .++..+|+.|++..            .+.+.++++.+||.+..++++.+||||||||++||+||+.+|+
T Consensus        72 ~i~~~~q~~--~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~  149 (235)
T cd03299          72 DISYVPQNY--ALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPK  149 (235)
T ss_pred             CEEEEeecC--ccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCC
Confidence            566777643  34556788776542            2345778999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEee
Q psy8397          75 IMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTI  153 (203)
Q Consensus        75 vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~  153 (203)
                      +++|||||+|||+.+++.+++.|+++..+ |+|+|++||++.                                      
T Consensus       150 llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~--------------------------------------  191 (235)
T cd03299         150 ILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFE--------------------------------------  191 (235)
T ss_pred             EEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH--------------------------------------
Confidence            99999999999999999999999998764 778888888753                                      


Q ss_pred             cCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         154 HQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       154 h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                           .+..+||++++|++|++++.|+++++.
T Consensus       192 -----~~~~~~d~i~~l~~G~i~~~~~~~~~~  218 (235)
T cd03299         192 -----EAWALADKVAIMLNGKLIQVGKPEEVF  218 (235)
T ss_pred             -----HHHHhCCEEEEEECCEEEEecCHHHHH
Confidence                 367889999999999999999887654

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=99.94  E-value=1.1e-25  Score=190.26  Aligned_cols=109  Identities=23%  Similarity=0.295  Sum_probs=96.0

Q ss_pred             HHHHHHHHHcCCc-ccccccCC-CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEE
Q psy8397          33 GLVDDILDTIGLV-LSKHTLCG-RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCT  110 (203)
Q Consensus        33 ~~v~~~L~~~~L~-~~~~~~v~-~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~  110 (203)
                      +++.++++.+||. ...++++. +||||||||++||++|+.+|++|||||||+|||+.++..+++.|+++.++|.|||++
T Consensus       121 ~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~v  200 (243)
T TIGR01978       121 KLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLII  200 (243)
T ss_pred             HHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEE
Confidence            3567789999997 46788887 599999999999999999999999999999999999999999999998778888888


Q ss_pred             ecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhh-cCEEEEEeCCeEEeeCCcccc
Q psy8397         111 IHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEM-VDHLYVIAEGHCVYKGSSANT  184 (203)
Q Consensus       111 tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~-~d~v~vl~~G~i~~~g~~~~~  184 (203)
                      ||+++                                           .+..+ ||++++|++|++++.|+++++
T Consensus       201 sH~~~-------------------------------------------~~~~~~~d~i~~l~~G~i~~~g~~~~~  232 (243)
T TIGR01978       201 THYQR-------------------------------------------LLNYIKPDYVHVLLDGRIVKSGDVELA  232 (243)
T ss_pred             EecHH-------------------------------------------HHHhhcCCeEEEEeCCEEEEecCHHHh
Confidence            88864                                           35666 899999999999999988743

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.94  E-value=1.8e-25  Score=193.03  Aligned_cols=145  Identities=26%  Similarity=0.334  Sum_probs=115.0

Q ss_pred             ceeEEEeeecccccCCCCHhHHHh------------HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCC
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILD------------TIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP   74 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~   74 (203)
                      ...|.+|..... +...++.++..            ..+++.++++.+++.+..++++.+||||||||++|||||+.+|+
T Consensus        84 ~i~~v~q~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~  162 (269)
T PRK13648         84 HIGIVFQNPDNQ-FVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPS  162 (269)
T ss_pred             heeEEEeChHHh-cccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence            456777654322 23355544321            23467788999999988999999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEee
Q psy8397          75 IMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTI  153 (203)
Q Consensus        75 vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~  153 (203)
                      +|||||||+|||+.++..+++.|+++.++ |.|||++||+++                                      
T Consensus       163 lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~--------------------------------------  204 (269)
T PRK13648        163 VIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLS--------------------------------------  204 (269)
T ss_pred             EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCch--------------------------------------
Confidence            99999999999999999999999998764 788888888864                                      


Q ss_pred             cCchhHHHhhcCEEEEEeCCeEEeeCCcccchh---HHHhcCCCCC
Q psy8397         154 HQPSATIFEMVDHLYVIAEGHCVYKGSSANTIP---YLQTIGLHCP  196 (203)
Q Consensus       154 h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~~---~~~~~g~~~p  196 (203)
                           .+.. ||++++|++|++++.|+++++..   .+..++.++|
T Consensus       205 -----~~~~-~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~  244 (269)
T PRK13648        205 -----EAME-ADHVIVMNKGTVYKEGTPTEIFDHAEELTRIGLDLP  244 (269)
T ss_pred             -----HHhc-CCEEEEEECCEEEEecCHHHHhcCHHHHHhcCCCCC
Confidence                 2444 99999999999999999887643   3444565554

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.94  E-value=6.3e-26  Score=212.66  Aligned_cols=136  Identities=26%  Similarity=0.422  Sum_probs=113.6

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH--------------HHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhc
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT--------------IGLVDDILDTIGLV-LSKHTLCGRLSGGQKKRLSIALELID   71 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~v~~~L~~~~L~-~~~~~~v~~LSgGqrqrl~iA~aL~~   71 (203)
                      ...|.+|.....++..+|+.+++..              .+++.++++.+||. ...++++.+|||||||||+||+||+.
T Consensus       363 ~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~  442 (529)
T PRK15134        363 RIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALIL  442 (529)
T ss_pred             ceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhC
Confidence            3567777542234556788876532              24567889999997 57899999999999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEE
Q psy8397          72 NPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIV  150 (203)
Q Consensus        72 ~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi  150 (203)
                      +|++|||||||+|||+.++..+++.|++++++ |.|||++||+++                                   
T Consensus       443 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~-----------------------------------  487 (529)
T PRK15134        443 KPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLH-----------------------------------  487 (529)
T ss_pred             CCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-----------------------------------
Confidence            99999999999999999999999999999864 778888888753                                   


Q ss_pred             EeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         151 CTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       151 ~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                              .+..+||++++|++|++++.|+++++.
T Consensus       488 --------~~~~~~d~i~~l~~G~i~~~~~~~~~~  514 (529)
T PRK15134        488 --------VVRALCHQVIVLRQGEVVEQGDCERVF  514 (529)
T ss_pred             --------HHHHhcCeEEEEECCEEEEEcCHHHHh
Confidence                    367899999999999999999887764

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=99.94  E-value=1.2e-25  Score=192.61  Aligned_cols=136  Identities=20%  Similarity=0.286  Sum_probs=110.0

Q ss_pred             ceeEEEeeecccccCCCCHhHHHh----------HHHHHHHHHHHcCCcc---cccccCCCCCHHHHHHHHHHHHHhcCC
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILD----------TIGLVDDILDTIGLVL---SKHTLCGRLSGGQKKRLSIALELIDNP   73 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~v~~~L~~~~L~~---~~~~~v~~LSgGqrqrl~iA~aL~~~P   73 (203)
                      ...+.+|.....+....++.++..          ..+++.++++.+++.+   ..++++++||||||||++|||||+.+|
T Consensus        80 ~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p  159 (254)
T PRK10418         80 KIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEA  159 (254)
T ss_pred             eEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCC
Confidence            456777654322334456544321          1246788999999986   568999999999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEe
Q psy8397          74 PIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCT  152 (203)
Q Consensus        74 ~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~  152 (203)
                      ++|||||||+|||+.++..+++.|+++.++ |.|||++||+++                                     
T Consensus       160 ~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~-------------------------------------  202 (254)
T PRK10418        160 PFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMG-------------------------------------  202 (254)
T ss_pred             CEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-------------------------------------
Confidence            999999999999999999999999998754 778888888753                                     


Q ss_pred             ecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         153 IHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       153 ~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                            .+.++||++++|++|+++..|+++++.
T Consensus       203 ------~~~~~~d~v~~l~~G~i~~~~~~~~~~  229 (254)
T PRK10418        203 ------VVARLADDVAVMSHGRIVEQGDVETLF  229 (254)
T ss_pred             ------HHHHhCCEEEEEECCEEEEecCHHHHh
Confidence                  367899999999999999999987664

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.94  E-value=5.3e-26  Score=211.04  Aligned_cols=121  Identities=21%  Similarity=0.354  Sum_probs=107.4

Q ss_pred             CCCHhHHHh----HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHH
Q psy8397          22 RISVDDILD----TIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAML   97 (203)
Q Consensus        22 ~~~~~~~~~----~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l   97 (203)
                      .+++.++..    ..+++.++++.+||.+..++++++||||||||++||+||+.+|++|||||||+|||+.+++.+++.|
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l  178 (490)
T PRK10938         99 GRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELL  178 (490)
T ss_pred             cccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence            367777542    3567889999999998899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEe
Q psy8397          98 KALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVY  177 (203)
Q Consensus        98 ~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~  177 (203)
                      ++++++|.|||++||+++                                           .+.++||++++|++|++++
T Consensus       179 ~~~~~~g~tvii~tH~~~-------------------------------------------~~~~~~d~v~~l~~G~i~~  215 (490)
T PRK10938        179 ASLHQSGITLVLVLNRFD-------------------------------------------EIPDFVQFAGVLADCTLAE  215 (490)
T ss_pred             HHHHhcCCeEEEEeCCHH-------------------------------------------HHHhhCCEEEEEECCEEEE
Confidence            999877888888888864                                           3678999999999999999


Q ss_pred             eCCcccch
Q psy8397         178 KGSSANTI  185 (203)
Q Consensus       178 ~g~~~~~~  185 (203)
                      .|+++++.
T Consensus       216 ~~~~~~~~  223 (490)
T PRK10938        216 TGEREEIL  223 (490)
T ss_pred             eCCHHHHh
Confidence            99887653

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=99.93  E-value=8.1e-26  Score=187.75  Aligned_cols=124  Identities=24%  Similarity=0.375  Sum_probs=104.2

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCC
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP   74 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~   74 (203)
                      +..+.+|..  .++..+|+.|++..            .+++.++++.+|+.+..++++.+||||||||++|||||+.+|+
T Consensus        79 ~i~~v~q~~--~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~  156 (214)
T cd03292          79 KIGVVFQDF--RLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPT  156 (214)
T ss_pred             heEEEecCc--hhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCC
Confidence            455666543  34566788886532            2357789999999988899999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeec
Q psy8397          75 IMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIH  154 (203)
Q Consensus        75 vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h  154 (203)
                      ++||||||+|||+.+++.+.+.|+++.++|.|||++||+++                                       
T Consensus       157 llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~---------------------------------------  197 (214)
T cd03292         157 ILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKE---------------------------------------  197 (214)
T ss_pred             EEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH---------------------------------------
Confidence            99999999999999999999999999766788888888853                                       


Q ss_pred             CchhHHHhhcCEEEEEeCCeE
Q psy8397         155 QPSATIFEMVDHLYVIAEGHC  175 (203)
Q Consensus       155 ~~~~~i~~~~d~v~vl~~G~i  175 (203)
                          .+..+||++++|++|++
T Consensus       198 ----~~~~~~d~i~~l~~G~~  214 (214)
T cd03292         198 ----LVDTTRHRVIALERGKL  214 (214)
T ss_pred             ----HHHHhCCEEEEEeCCcC
Confidence                36678999999999974

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.93  E-value=8.9e-26  Score=211.62  Aligned_cols=135  Identities=24%  Similarity=0.399  Sum_probs=110.8

Q ss_pred             ceeEEEeeecccccCCCCHhHHHh-------------HHHHHHHHHHHcCCcc---cccccCCCCCHHHHHHHHHHHHHh
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILD-------------TIGLVDDILDTIGLVL---SKHTLCGRLSGGQKKRLSIALELI   70 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~v~~~L~~~~L~~---~~~~~v~~LSgGqrqrl~iA~aL~   70 (203)
                      ...+.+|.....+...+++.++..             ..+++.++++.+||.+   ..++++.+|||||||||+|||||+
T Consensus        93 ~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~  172 (529)
T PRK15134         93 KIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALL  172 (529)
T ss_pred             ceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHHh
Confidence            356667654322444466665432             2356788999999975   468999999999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceE
Q psy8397          71 DNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTI  149 (203)
Q Consensus        71 ~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tv  149 (203)
                      .+|++|||||||+|||+.++..+++.|++++++ |.|||++||+++                                  
T Consensus       173 ~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~----------------------------------  218 (529)
T PRK15134        173 TRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLS----------------------------------  218 (529)
T ss_pred             cCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHH----------------------------------
Confidence            999999999999999999999999999999865 778888888764                                  


Q ss_pred             EEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccc
Q psy8397         150 VCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANT  184 (203)
Q Consensus       150 i~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~  184 (203)
                               .+..+||++++|++|++++.|+++++
T Consensus       219 ---------~~~~~~dri~~l~~G~i~~~g~~~~~  244 (529)
T PRK15134        219 ---------IVRKLADRVAVMQNGRCVEQNRAATL  244 (529)
T ss_pred             ---------HHHHhcCEEEEEECCEEEEeCCHHHH
Confidence                     36789999999999999999988765

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=2.2e-25  Score=193.71  Aligned_cols=135  Identities=23%  Similarity=0.314  Sum_probs=111.6

Q ss_pred             CceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCC
Q psy8397           6 HGTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNP   73 (203)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P   73 (203)
                      ....+.+|.....+ ...|+.+++..            .+++.++++.+||.+..++++.+||||||||++|||||+.+|
T Consensus        81 ~~i~~v~q~~~~~~-~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p  159 (277)
T PRK13642         81 RKIGMVFQNPDNQF-VGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRP  159 (277)
T ss_pred             cceEEEEECHHHhh-ccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence            34567776533223 34677776531            235678899999998999999999999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEe
Q psy8397          74 PIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCT  152 (203)
Q Consensus        74 ~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~  152 (203)
                      ++|||||||+|||+.++..+++.|+++.++ |.|||++||+++                                     
T Consensus       160 ~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~-------------------------------------  202 (277)
T PRK13642        160 EIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLD-------------------------------------  202 (277)
T ss_pred             CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-------------------------------------
Confidence            999999999999999999999999999865 788888888864                                     


Q ss_pred             ecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         153 IHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       153 ~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                            .+. .||++++|++|+++..|+++++.
T Consensus       203 ------~~~-~~d~i~~l~~G~i~~~g~~~~~~  228 (277)
T PRK13642        203 ------EAA-SSDRILVMKAGEIIKEAAPSELF  228 (277)
T ss_pred             ------HHH-hCCEEEEEECCEEEEeCCHHHHh
Confidence                  244 59999999999999999987764

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=99.93  E-value=1.6e-25  Score=187.01  Aligned_cols=107  Identities=21%  Similarity=0.370  Sum_probs=89.8

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCC
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP   74 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~   74 (203)
                      ...|.+|.  ..+++.+|+.|++..            .+++.++++.+|+.+..++++++||||||||++|||+|+.+|+
T Consensus        84 ~i~~v~q~--~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~  161 (221)
T TIGR02211        84 KLGFIYQF--HHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPS  161 (221)
T ss_pred             cEEEEecc--cccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCC
Confidence            35566654  234556788886532            2357789999999988999999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCC
Q psy8397          75 IMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPS  115 (203)
Q Consensus        75 vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~  115 (203)
                      +|||||||+|||+.++..+++.|++++++ |.|||++||+++
T Consensus       162 illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~  203 (221)
T TIGR02211       162 LVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE  203 (221)
T ss_pred             EEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence            99999999999999999999999999754 778888888753

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.93  E-value=1.5e-25  Score=190.88  Aligned_cols=133  Identities=26%  Similarity=0.326  Sum_probs=110.2

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH--------------HHHHHHHHHHcCCcc----cccccCCCCCHHHHHHHHHHHH
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT--------------IGLVDDILDTIGLVL----SKHTLCGRLSGGQKKRLSIALE   68 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~v~~~L~~~~L~~----~~~~~v~~LSgGqrqrl~iA~a   68 (203)
                      +..+.+|..  .++..+|+.|++..              .+++.++++.+|+.+    ..++++.+||||||||++||||
T Consensus        83 ~i~~v~q~~--~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~lara  160 (250)
T PRK14247         83 RVQMVFQIP--NPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARA  160 (250)
T ss_pred             cEEEEeccC--ccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHH
Confidence            455666543  24456888887632              235677899999853    5789999999999999999999


Q ss_pred             HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCce
Q psy8397          69 LIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRT  148 (203)
Q Consensus        69 L~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t  148 (203)
                      |+.+|++|||||||+|||+.++..+++.|+++.+ |.|+|++||+++                                 
T Consensus       161 l~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~---------------------------------  206 (250)
T PRK14247        161 LAFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFPQ---------------------------------  206 (250)
T ss_pred             HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH---------------------------------
Confidence            9999999999999999999999999999999864 788888888864                                 


Q ss_pred             EEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         149 IVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       149 vi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                                .+.++||++++|++|++++.|+++++.
T Consensus       207 ----------~~~~~~d~i~~l~~G~i~~~g~~~~~~  233 (250)
T PRK14247        207 ----------QAARISDYVAFLYKGQIVEWGPTREVF  233 (250)
T ss_pred             ----------HHHHhcCEEEEEECCeEEEECCHHHHH
Confidence                      367899999999999999999987664

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.93  E-value=1.2e-25  Score=210.26  Aligned_cols=135  Identities=23%  Similarity=0.329  Sum_probs=112.5

Q ss_pred             eeEEEeeecccccCCCCHhHHHh------------HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCE
Q psy8397           8 TIWCWQIISAQYSHRISVDDILD------------TIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPI   75 (203)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~------------~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~v   75 (203)
                      ..+.||... .++..+++.+++.            ..+++.++++.+||.+..++++++|||||||||+||+||+.+|++
T Consensus       111 i~~v~q~~~-~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~iA~al~~~p~l  189 (520)
T TIGR03269       111 IAIMLQRTF-ALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDLSGGEKQRVVLARQLAKEPFL  189 (520)
T ss_pred             EEEEecccc-ccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcCcccCCHHHHHHHHHHHHHhcCCCE
Confidence            456666422 2345577776553            134678899999999888999999999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeec
Q psy8397          76 MFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIH  154 (203)
Q Consensus        76 LlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h  154 (203)
                      |||||||+|||+.++..+++.|+++.++ |.|||++||+++                                       
T Consensus       190 llLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~---------------------------------------  230 (520)
T TIGR03269       190 FLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPE---------------------------------------  230 (520)
T ss_pred             EEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH---------------------------------------
Confidence            9999999999999999999999999753 778888888764                                       


Q ss_pred             CchhHHHhhcCEEEEEeCCeEEeeCCcccchh
Q psy8397         155 QPSATIFEMVDHLYVIAEGHCVYKGSSANTIP  186 (203)
Q Consensus       155 ~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~~  186 (203)
                          .+..+||++++|++|++++.|+++++..
T Consensus       231 ----~~~~~~d~i~~l~~G~i~~~g~~~~~~~  258 (520)
T TIGR03269       231 ----VIEDLSDKAIWLENGEIKEEGTPDEVVA  258 (520)
T ss_pred             ----HHHHhcCEEEEEeCCEEeeecCHHHHHH
Confidence                3678999999999999999998877654

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.93  E-value=1.6e-25  Score=192.21  Aligned_cols=132  Identities=27%  Similarity=0.297  Sum_probs=108.4

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHHHh
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLV----LSKHTLCGRLSGGQKKRLSIALELI   70 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~----~~~~~~v~~LSgGqrqrl~iA~aL~   70 (203)
                      ...+.+|...  ++. .|+.+++..            .+++.++++.+++.    +..++++.+||||||||++|||||+
T Consensus        94 ~i~~v~q~~~--~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~  170 (258)
T PRK14268         94 NVGMVFQKPN--PFP-MSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLA  170 (258)
T ss_pred             hEEEEecCCc--cCc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHH
Confidence            3556665432  233 788776542            12467789999883    4578899999999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEE
Q psy8397          71 DNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIV  150 (203)
Q Consensus        71 ~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi  150 (203)
                      .+|++|||||||+|||+.++..+++.|+++.+ |.|||++||+++                                   
T Consensus       171 ~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~~-----------------------------------  214 (258)
T PRK14268        171 VKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNMQ-----------------------------------  214 (258)
T ss_pred             cCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-----------------------------------
Confidence            99999999999999999999999999999864 788888888864                                   


Q ss_pred             EeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         151 CTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       151 ~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                              .+.++||++++|++|++++.|+++++.
T Consensus       215 --------~~~~~~d~i~~l~~G~i~~~~~~~~~~  241 (258)
T PRK14268        215 --------QAARISDYTGFFLMGELIEFGQTRQIF  241 (258)
T ss_pred             --------HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence                    367889999999999999999987664

>PRK10908 cell division protein FtsE; Provisional

Probab=99.93  E-value=1.7e-25  Score=187.52  Aligned_cols=126  Identities=23%  Similarity=0.332  Sum_probs=105.3

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCC
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP   74 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~   74 (203)
                      ...+.+|..  .++..+|+.|++..            .+++.++++.+++.+..++++.+||||||||++|||||+.+|+
T Consensus        80 ~i~~~~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~  157 (222)
T PRK10908         80 QIGMIFQDH--HLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPA  157 (222)
T ss_pred             heEEEecCc--cccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCC
Confidence            345666643  34455788776532            2246788999999988899999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeec
Q psy8397          75 IMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIH  154 (203)
Q Consensus        75 vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h  154 (203)
                      +|||||||+|||+.++..+++.|+++.++|.|+|++||+++                                       
T Consensus       158 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~---------------------------------------  198 (222)
T PRK10908        158 VLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIG---------------------------------------  198 (222)
T ss_pred             EEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH---------------------------------------
Confidence            99999999999999999999999999866788888888864                                       


Q ss_pred             CchhHHHhhcCEEEEEeCCeEEe
Q psy8397         155 QPSATIFEMVDHLYVIAEGHCVY  177 (203)
Q Consensus       155 ~~~~~i~~~~d~v~vl~~G~i~~  177 (203)
                          .+..+||++++|++|+++.
T Consensus       199 ----~~~~~~d~i~~l~~G~i~~  217 (222)
T PRK10908        199 ----LISRRSYRMLTLSDGHLHG  217 (222)
T ss_pred             ----HHHHhCCEEEEEECCEEcc
Confidence                3678899999999999753

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=99.93  E-value=1.3e-25  Score=186.32  Aligned_cols=124  Identities=27%  Similarity=0.412  Sum_probs=103.8

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH-------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCC
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT-------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNP   73 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P   73 (203)
                      ...|.+|..  .++..+|+.|++..             .+++.++++.+|+.+..++++.+||||||||++||+||+.+|
T Consensus        77 ~i~~~~q~~--~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p  154 (213)
T cd03262          77 KVGMVFQQF--NLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNP  154 (213)
T ss_pred             cceEEeccc--ccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCC
Confidence            345666543  34456788776532             235678899999998899999999999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEee
Q psy8397          74 PIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTI  153 (203)
Q Consensus        74 ~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~  153 (203)
                      ++|||||||+|||+.++..+++.|++++++|.|||++||+++                                      
T Consensus       155 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~--------------------------------------  196 (213)
T cd03262         155 KVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMG--------------------------------------  196 (213)
T ss_pred             CEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--------------------------------------
Confidence            999999999999999999999999999866788888888863                                      


Q ss_pred             cCchhHHHhhcCEEEEEeCCeE
Q psy8397         154 HQPSATIFEMVDHLYVIAEGHC  175 (203)
Q Consensus       154 h~~~~~i~~~~d~v~vl~~G~i  175 (203)
                           .+.++||++++|++|++
T Consensus       197 -----~~~~~~d~i~~l~~g~i  213 (213)
T cd03262         197 -----FAREVADRVIFMDDGRI  213 (213)
T ss_pred             -----HHHHhCCEEEEEeCCcC
Confidence                 36789999999999974

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=2.9e-25  Score=192.20  Aligned_cols=134  Identities=24%  Similarity=0.335  Sum_probs=111.1

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCC
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP   74 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~   74 (203)
                      ...+++|.... +...+|+.|++..            ..++.++++.+||.+..++++.+||||||||++|||||+.+|+
T Consensus        84 ~i~~v~q~~~~-~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~  162 (271)
T PRK13632         84 KIGIIFQNPDN-QFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPE  162 (271)
T ss_pred             ceEEEEeCHHH-hcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence            45677765322 2345788886532            2246788999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEee
Q psy8397          75 IMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTI  153 (203)
Q Consensus        75 vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~  153 (203)
                      +|||||||+|||+.++..+++.|+++.++ |+|||++||+++                                      
T Consensus       163 lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~--------------------------------------  204 (271)
T PRK13632        163 IIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMD--------------------------------------  204 (271)
T ss_pred             EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechh--------------------------------------
Confidence            99999999999999999999999999765 478888888864                                      


Q ss_pred             cCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         154 HQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       154 h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                           .+ ..||++++|++|+++..|+++++.
T Consensus       205 -----~~-~~~d~v~~l~~G~i~~~g~~~~~~  230 (271)
T PRK13632        205 -----EA-ILADKVIVFSEGKLIAQGKPKEIL  230 (271)
T ss_pred             -----HH-hhCCEEEEEECCEEEEecCHHHHh
Confidence                 23 379999999999999999887654

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.93  E-value=1.4e-25  Score=209.15  Aligned_cols=136  Identities=21%  Similarity=0.363  Sum_probs=113.1

Q ss_pred             ceeEEEeeec-ccccCCCCHhHHHhH------------------HHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHH
Q psy8397           7 GTIWCWQIIS-AQYSHRISVDDILDT------------------IGLVDDILDTIGLV-LSKHTLCGRLSGGQKKRLSIA   66 (203)
Q Consensus         7 ~~~~~~~~~~-~~~~~~~~~~~~~~~------------------~~~v~~~L~~~~L~-~~~~~~v~~LSgGqrqrl~iA   66 (203)
                      +..|.+|... ..++..+|+.+++..                  .+++.++++.+|+. ...++++++|||||||||+||
T Consensus       328 ~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA  407 (501)
T PRK10762        328 GIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIA  407 (501)
T ss_pred             CCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHH
Confidence            4566666532 123455777765421                  23577899999995 678999999999999999999


Q ss_pred             HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCC
Q psy8397          67 LELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGG  146 (203)
Q Consensus        67 ~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  146 (203)
                      +||+.+|++|||||||+|||+.++..+++.|+++.++|.|||++||+++                               
T Consensus       408 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~-------------------------------  456 (501)
T PRK10762        408 RGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMP-------------------------------  456 (501)
T ss_pred             HHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHH-------------------------------
Confidence            9999999999999999999999999999999999877888888888864                               


Q ss_pred             ceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         147 RTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       147 ~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                                  .+..+||++++|++|++++.|+++++.
T Consensus       457 ------------~~~~~~d~v~~l~~G~i~~~~~~~~~~  483 (501)
T PRK10762        457 ------------EVLGMSDRILVMHEGRISGEFTREQAT  483 (501)
T ss_pred             ------------HHHhhCCEEEEEECCEEEEEeccccCC
Confidence                        467899999999999999999988764

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.93  E-value=1.3e-25  Score=209.97  Aligned_cols=134  Identities=20%  Similarity=0.232  Sum_probs=112.2

Q ss_pred             eeEEEeeecccccCCCCHhHHHhH-----------HHHHHHHHHHcCCcc-----cccccCCCCCHHHHHHHHHHHHHhc
Q psy8397           8 TIWCWQIISAQYSHRISVDDILDT-----------IGLVDDILDTIGLVL-----SKHTLCGRLSGGQKKRLSIALELID   71 (203)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~v~~~L~~~~L~~-----~~~~~v~~LSgGqrqrl~iA~aL~~   71 (203)
                      ..|.+|..  .++..+|+.+++..           .+++.++++.+||..     ..++++.+|||||||||+|||||+.
T Consensus       367 i~~v~q~~--~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~  444 (520)
T TIGR03269       367 IGILHQEY--DLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIK  444 (520)
T ss_pred             EEEEccCc--ccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhc
Confidence            55667643  24566888887642           235678899999975     5789999999999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEE
Q psy8397          72 NPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIV  150 (203)
Q Consensus        72 ~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi  150 (203)
                      +|++|||||||+|||+.+++.+++.|++++++ |.|||++||+++                                   
T Consensus       445 ~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-----------------------------------  489 (520)
T TIGR03269       445 EPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMD-----------------------------------  489 (520)
T ss_pred             CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-----------------------------------
Confidence            99999999999999999999999999999754 777888877753                                   


Q ss_pred             EeecCchhHHHhhcCEEEEEeCCeEEeeCCcccchh
Q psy8397         151 CTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTIP  186 (203)
Q Consensus       151 ~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~~  186 (203)
                              .+..+||++++|++|++++.|+++++..
T Consensus       490 --------~~~~~~d~i~~l~~G~i~~~g~~~~~~~  517 (520)
T TIGR03269       490 --------FVLDVCDRAALMRDGKIVKIGDPEEIVE  517 (520)
T ss_pred             --------HHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence                    4678999999999999999998877643

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=99.93  E-value=2.2e-25  Score=192.84  Aligned_cols=136  Identities=21%  Similarity=0.309  Sum_probs=113.1

Q ss_pred             ceeEEEeeecccccCCCCHhHHHh-------------HHHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhcC
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILD-------------TIGLVDDILDTIGLV-LSKHTLCGRLSGGQKKRLSIALELIDN   72 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~v~~~L~~~~L~-~~~~~~v~~LSgGqrqrl~iA~aL~~~   72 (203)
                      ...|.+|.....+....++.+++.             ...++.++++.+|+. ...++++.+||||||||++||+||+.+
T Consensus        90 ~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~~  169 (268)
T PRK10419         90 DIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVE  169 (268)
T ss_pred             cEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHhcC
Confidence            466777654333455677776542             123578899999997 578999999999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEE
Q psy8397          73 PPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVC  151 (203)
Q Consensus        73 P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~  151 (203)
                      |++|||||||+|||+.++..+.+.|+++.++ |.|+|++||+++                                    
T Consensus       170 p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~------------------------------------  213 (268)
T PRK10419        170 PKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLR------------------------------------  213 (268)
T ss_pred             CCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHH------------------------------------
Confidence            9999999999999999999999999998764 778888887753                                    


Q ss_pred             eecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         152 TIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       152 ~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                             .+..+||++++|.+|++++.|+++++.
T Consensus       214 -------~i~~~~d~i~~l~~G~i~~~g~~~~~~  240 (268)
T PRK10419        214 -------LVERFCQRVMVMDNGQIVETQPVGDKL  240 (268)
T ss_pred             -------HHHHhCCEEEEEECCEEeeeCChhhcc
Confidence                   467799999999999999999988865

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.93  E-value=1.3e-25  Score=210.01  Aligned_cols=110  Identities=20%  Similarity=0.338  Sum_probs=100.4

Q ss_pred             HHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEe
Q psy8397          33 GLVDDILDTIGLV-LSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTI  111 (203)
Q Consensus        33 ~~v~~~L~~~~L~-~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~t  111 (203)
                      +++.++++.+|+. ...++++++|||||||||+||+||+.+|++|||||||+|||+.+++.+++.|++++++|.|||++|
T Consensus       381 ~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivs  460 (510)
T PRK15439        381 AVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFIS  460 (510)
T ss_pred             HHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEEC
Confidence            3577899999997 788999999999999999999999999999999999999999999999999999987778888888


Q ss_pred             cCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         112 HQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       112 H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                      |+++                                           .+.++||+++++++|++++.|+++++.
T Consensus       461 Hd~~-------------------------------------------~i~~~~d~i~~l~~G~i~~~~~~~~~~  491 (510)
T PRK15439        461 SDLE-------------------------------------------EIEQMADRVLVMHQGEISGALTGAAIN  491 (510)
T ss_pred             CCHH-------------------------------------------HHHHhCCEEEEEECCEEEEEEccccCC
Confidence            8864                                           477899999999999999999988765

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=99.93  E-value=2.3e-25  Score=192.85  Aligned_cols=110  Identities=28%  Similarity=0.519  Sum_probs=98.9

Q ss_pred             HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEe
Q psy8397          32 IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTI  111 (203)
Q Consensus        32 ~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~t  111 (203)
                      .+++.++++.+|+.+..++++++||||||||++|||||+.+|++|+|||||+|||+.+++.+.+.|++++++|.|||++|
T Consensus       120 ~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivs  199 (272)
T PRK15056        120 RQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVST  199 (272)
T ss_pred             HHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence            34677889999999889999999999999999999999999999999999999999999999999999986688888888


Q ss_pred             cCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         112 HQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       112 H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                      |+++                                           .+.++||+++++ +|+++..|+++++.
T Consensus       200 H~~~-------------------------------------------~~~~~~d~v~~~-~G~i~~~g~~~~~~  229 (272)
T PRK15056        200 HNLG-------------------------------------------SVTEFCDYTVMV-KGTVLASGPTETTF  229 (272)
T ss_pred             CCHH-------------------------------------------HHHHhCCEEEEE-CCEEEeecCHHhcc
Confidence            8863                                           367899999777 89999999988764

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=99.93  E-value=2.7e-25  Score=186.78  Aligned_cols=125  Identities=22%  Similarity=0.347  Sum_probs=103.8

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCC
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP   74 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~   74 (203)
                      ...+.+|..  .++..+|+.|++..            .+++.++++.+++.+..++++.+||||||||++||+||+.+|+
T Consensus        89 ~i~~~~q~~--~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p~  166 (228)
T PRK10584         89 HVGFVFQSF--MLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPD  166 (228)
T ss_pred             eEEEEEccc--ccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence            455666543  34556788876531            3467889999999988899999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEee
Q psy8397          75 IMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTI  153 (203)
Q Consensus        75 vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~  153 (203)
                      +|||||||+|||+.++..+++.|++++++ |.|||++||+++                                      
T Consensus       167 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~--------------------------------------  208 (228)
T PRK10584        167 VLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQ--------------------------------------  208 (228)
T ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH--------------------------------------
Confidence            99999999999999999999999999754 777777777753                                      


Q ss_pred             cCchhHHHhhcCEEEEEeCCeEEe
Q psy8397         154 HQPSATIFEMVDHLYVIAEGHCVY  177 (203)
Q Consensus       154 h~~~~~i~~~~d~v~vl~~G~i~~  177 (203)
                           .+ ..||+++++++|++++
T Consensus       209 -----~~-~~~d~i~~l~~g~i~~  226 (228)
T PRK10584        209 -----LA-ARCDRRLRLVNGQLQE  226 (228)
T ss_pred             -----HH-HhCCEEEEEECCEEEe
Confidence                 24 4599999999999865

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.93  E-value=1.4e-25  Score=209.13  Aligned_cols=110  Identities=20%  Similarity=0.356  Sum_probs=100.4

Q ss_pred             HHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEe
Q psy8397          33 GLVDDILDTIGLV-LSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTI  111 (203)
Q Consensus        33 ~~v~~~L~~~~L~-~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~t  111 (203)
                      +++.++++.+++. +..++++.+|||||||||+||++|+.+|++|||||||+|||+.++..+++.|+++++.|.|||++|
T Consensus       374 ~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivs  453 (501)
T PRK11288        374 ENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVS  453 (501)
T ss_pred             HHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEEC
Confidence            3577899999994 688999999999999999999999999999999999999999999999999999987788888888


Q ss_pred             cCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         112 HQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       112 H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                      ||++                                           .+.++||++++|++|++++.|++++..
T Consensus       454 Hd~~-------------------------------------------~~~~~~d~i~~l~~g~i~~~~~~~~~~  484 (501)
T PRK11288        454 SDLP-------------------------------------------EVLGVADRIVVMREGRIAGELAREQAT  484 (501)
T ss_pred             CCHH-------------------------------------------HHHhhCCEEEEEECCEEEEEEccccCC
Confidence            8864                                           477899999999999999999988754

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=99.93  E-value=1.8e-25  Score=186.29  Aligned_cols=130  Identities=23%  Similarity=0.380  Sum_probs=112.9

Q ss_pred             ceeEEEeeecccccCCCCHhHHHh------------HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCC
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILD------------TIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP   74 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~   74 (203)
                      ....+||.+.  +-...||.|+..            .+++|.++|+.+||.++++..+.+|||||||||+||||++++|+
T Consensus        80 ~IGvVFQD~r--LL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~  157 (223)
T COG2884          80 QIGVVFQDFR--LLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPA  157 (223)
T ss_pred             eeeeEeeecc--ccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCC
Confidence            4556777554  345678888653            57899999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeec
Q psy8397          75 IMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIH  154 (203)
Q Consensus        75 vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h  154 (203)
                      +||-||||.+|||....++++++.++.+.|+||++.|||.+                                       
T Consensus       158 vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~---------------------------------------  198 (223)
T COG2884         158 VLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLE---------------------------------------  198 (223)
T ss_pred             eEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHH---------------------------------------
Confidence            99999999999999999999999999988999999999853                                       


Q ss_pred             CchhHHHhhcCEEEEEeCCeEEeeCCc
Q psy8397         155 QPSATIFEMVDHLYVIAEGHCVYKGSS  181 (203)
Q Consensus       155 ~~~~~i~~~~d~v~vl~~G~i~~~g~~  181 (203)
                          .+..+-.|++.+.+|+++.+...
T Consensus       199 ----lv~~~~~rvl~l~~Grl~~d~~~  221 (223)
T COG2884         199 ----LVNRMRHRVLALEDGRLVRDESR  221 (223)
T ss_pred             ----HHHhccCcEEEEeCCEEEecccc
Confidence                35667889999999999876543

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=99.93  E-value=2.9e-25  Score=187.63  Aligned_cols=135  Identities=25%  Similarity=0.332  Sum_probs=112.9

Q ss_pred             CceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCC
Q psy8397           6 HGTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNP   73 (203)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P   73 (203)
                      ....+++|..  .++..+|+.+++..            .+++.++++.+|+.+..++.+.+||||||||++|||||+.+|
T Consensus        72 ~~i~~~~q~~--~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p  149 (232)
T cd03300          72 RPVNTVFQNY--ALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEP  149 (232)
T ss_pred             cceEEEeccc--ccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence            3456666643  34456788877542            235678899999999999999999999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEe
Q psy8397          74 PIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCT  152 (203)
Q Consensus        74 ~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~  152 (203)
                      +++||||||+|||+.+++.+++.|++++++ |.|||++||+++                                     
T Consensus       150 ~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~-------------------------------------  192 (232)
T cd03300         150 KVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQE-------------------------------------  192 (232)
T ss_pred             CEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-------------------------------------
Confidence            999999999999999999999999999864 778888888753                                     


Q ss_pred             ecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         153 IHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       153 ~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                            .+.+.||+++++++|++++.|+++++.
T Consensus       193 ------~~~~~~d~i~~l~~G~~~~~~~~~~~~  219 (232)
T cd03300         193 ------EALTMSDRIAVMNKGKIQQIGTPEEIY  219 (232)
T ss_pred             ------HHHHhcCEEEEEECCEEEecCCHHHHH
Confidence                  367899999999999999999876554

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=99.93  E-value=1.5e-25  Score=190.85  Aligned_cols=132  Identities=27%  Similarity=0.321  Sum_probs=109.5

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH-------------HHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHHH
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT-------------IGLVDDILDTIGLV----LSKHTLCGRLSGGQKKRLSIALEL   69 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~v~~~L~~~~L~----~~~~~~v~~LSgGqrqrl~iA~aL   69 (203)
                      ...+.+|...  ++. .|+.|++..             .+++.++++.+|+.    +..++++.+||||||||++|||||
T Consensus        83 ~i~~v~q~~~--~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral  159 (247)
T TIGR00972        83 RVGMVFQKPN--PFP-MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARAL  159 (247)
T ss_pred             heEEEecCcc--cCC-CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHH
Confidence            4556665432  334 777776531             23567789999998    778999999999999999999999


Q ss_pred             hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceE
Q psy8397          70 IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTI  149 (203)
Q Consensus        70 ~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tv  149 (203)
                      +.+|+++||||||+|||+.++..+++.|+++++ +.|||++||+++                                  
T Consensus       160 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~----------------------------------  204 (247)
T TIGR00972       160 AVEPEVLLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVTHNMQ----------------------------------  204 (247)
T ss_pred             hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCeEEEEecCHH----------------------------------
Confidence            999999999999999999999999999999876 378888888753                                  


Q ss_pred             EEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         150 VCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       150 i~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                               .+..+||++++|++|+++..|+++++.
T Consensus       205 ---------~~~~~~d~i~~l~~G~i~~~~~~~~~~  231 (247)
T TIGR00972       205 ---------QAARISDRTAFFYDGELVEYGPTEQIF  231 (247)
T ss_pred             ---------HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence                     367899999999999999999887654

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=3e-25  Score=190.85  Aligned_cols=129  Identities=25%  Similarity=0.341  Sum_probs=106.9

Q ss_pred             eeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCE
Q psy8397           8 TIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPI   75 (203)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~v   75 (203)
                      ..+.+|..  .++...|+.+++..            .+++.++++.+||.+..++++.+||||||||++||+||+.+|++
T Consensus        72 ~~~v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~l  149 (255)
T PRK11248         72 RGVVFQNE--GLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQL  149 (255)
T ss_pred             EEEEeCCC--ccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence            34555542  34455788876532            23578899999999888999999999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeec
Q psy8397          76 MFLDEPTTGLDSNSTNQCVAMLKALAR-GGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIH  154 (203)
Q Consensus        76 LlLDEPt~gLD~~~~~~i~~~l~~l~~-~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h  154 (203)
                      |||||||+|||+.++..+++.|+++.+ +|.|||++||+++                                       
T Consensus       150 llLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~---------------------------------------  190 (255)
T PRK11248        150 LLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIE---------------------------------------  190 (255)
T ss_pred             EEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH---------------------------------------
Confidence            999999999999999999999999864 4778888888754                                       


Q ss_pred             CchhHHHhhcCEEEEEe--CCeEEeeCCc
Q psy8397         155 QPSATIFEMVDHLYVIA--EGHCVYKGSS  181 (203)
Q Consensus       155 ~~~~~i~~~~d~v~vl~--~G~i~~~g~~  181 (203)
                          .+..+||++++|+  +|+++..++.
T Consensus       191 ----~~~~~~d~i~~l~~~~G~i~~~~~~  215 (255)
T PRK11248        191 ----EAVFMATELVLLSPGPGRVVERLPL  215 (255)
T ss_pred             ----HHHHhCCEEEEEeCCCcEEEEEecC
Confidence                4678999999998  5999887654

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=99.93  E-value=1.9e-25  Score=187.89  Aligned_cols=134  Identities=27%  Similarity=0.380  Sum_probs=110.8

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH---------HHHHHHHHHHcC-CcccccccCCCCCHHHHHHHHHHHHHhcCCCEE
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT---------IGLVDDILDTIG-LVLSKHTLCGRLSGGQKKRLSIALELIDNPPIM   76 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~v~~~L~~~~-L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vL   76 (203)
                      ...|.+|..  .+++.+|+.+++..         .+.+.++++.++ +....++++.+||||||||++||+||+.+|+++
T Consensus        76 ~i~~~~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~il  153 (230)
T TIGR03410        76 GIAYVPQGR--EIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLL  153 (230)
T ss_pred             CeEEeccCC--cccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence            355666543  24566788887642         123567788886 677789999999999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecC
Q psy8397          77 FLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQ  155 (203)
Q Consensus        77 lLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~  155 (203)
                      +|||||+|||+.++..+++.|+++.++ |+|||++||+++                                        
T Consensus       154 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~----------------------------------------  193 (230)
T TIGR03410       154 LLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLD----------------------------------------  193 (230)
T ss_pred             EecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHH----------------------------------------
Confidence            999999999999999999999998864 778888888753                                        


Q ss_pred             chhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         156 PSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       156 ~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                         .+..+||+++++++|+++..|+++++.
T Consensus       194 ---~~~~~~d~v~~l~~g~i~~~~~~~~~~  220 (230)
T TIGR03410       194 ---FARELADRYYVMERGRVVASGAGDELD  220 (230)
T ss_pred             ---HHHHhCCEEEEEECCEEEEECCHHHcC
Confidence               367789999999999999999988763

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=99.93  E-value=3e-25  Score=189.35  Aligned_cols=132  Identities=23%  Similarity=0.244  Sum_probs=107.7

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH-------------HHHHHHHHHHcCCcc----cccccCCCCCHHHHHHHHHHHHH
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT-------------IGLVDDILDTIGLVL----SKHTLCGRLSGGQKKRLSIALEL   69 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~v~~~L~~~~L~~----~~~~~v~~LSgGqrqrl~iA~aL   69 (203)
                      ...+.+|...  ++. .|+.|++..             .+++.++++.+|+.+    ..++++.+||||||||++|||||
T Consensus        88 ~i~~v~q~~~--~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral  164 (253)
T PRK14242         88 RVGMVFQKPN--PFP-KSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARAL  164 (253)
T ss_pred             cEEEEecCCC--CCc-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHH
Confidence            4556666432  333 477776532             235677888889843    46888999999999999999999


Q ss_pred             hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceE
Q psy8397          70 IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTI  149 (203)
Q Consensus        70 ~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tv  149 (203)
                      +.+|++|||||||+|||+.++..+++.|+++.+ |.|||++||+++                                  
T Consensus       165 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~tH~~~----------------------------------  209 (253)
T PRK14242        165 AVEPEVLLMDEPASALDPIATQKIEELIHELKA-RYTIIIVTHNMQ----------------------------------  209 (253)
T ss_pred             hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCeEEEEEecHH----------------------------------
Confidence            999999999999999999999999999999854 688888888864                                  


Q ss_pred             EEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         150 VCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       150 i~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                               .+.++||++++|++|++++.|+++++.
T Consensus       210 ---------~~~~~~d~v~~l~~G~i~~~g~~~~~~  236 (253)
T PRK14242        210 ---------QAARVSDVTAFFYMGKLIEVGPTEQIF  236 (253)
T ss_pred             ---------HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence                     367899999999999999999887654

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.93  E-value=3e-25  Score=206.17  Aligned_cols=134  Identities=22%  Similarity=0.311  Sum_probs=113.2

Q ss_pred             ceeEEEeeecccccCCCCHhHHHh---------------HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhc
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILD---------------TIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELID   71 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~   71 (203)
                      ...+.+|..  .++..+|+.+++.               ..+++.++++.+++....++++.+|||||||||+||+||+.
T Consensus        74 ~i~~v~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~  151 (491)
T PRK10982         74 GISMVHQEL--NLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSY  151 (491)
T ss_pred             CEEEEeccc--ccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHh
Confidence            455667643  2345577777542               13467889999999988999999999999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEE
Q psy8397          72 NPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVC  151 (203)
Q Consensus        72 ~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~  151 (203)
                      +|++|||||||+|||+.++..+++.|+++++.|.|||++||+++                                    
T Consensus       152 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~------------------------------------  195 (491)
T PRK10982        152 NAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKME------------------------------------  195 (491)
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH------------------------------------
Confidence            99999999999999999999999999999877888888888754                                    


Q ss_pred             eecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         152 TIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       152 ~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                             .+..+||++++|++|++++.|+++++.
T Consensus       196 -------~~~~~~d~i~~l~~G~i~~~~~~~~~~  222 (491)
T PRK10982        196 -------EIFQLCDEITILRDGQWIATQPLAGLT  222 (491)
T ss_pred             -------HHHHhCCEEEEEECCEEEeecChhhCC
Confidence                   367899999999999999999987763

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.93  E-value=2.7e-25  Score=207.40  Aligned_cols=107  Identities=22%  Similarity=0.361  Sum_probs=97.1

Q ss_pred             HHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEe
Q psy8397          33 GLVDDILDTIGLV-LSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTI  111 (203)
Q Consensus        33 ~~v~~~L~~~~L~-~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~t  111 (203)
                      +++.++++.+|+. +..++++++|||||||||+|||+|+.+|++|||||||+|||+.++..+++.|++++++|.|||++|
T Consensus       387 ~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vs  466 (510)
T PRK09700        387 RTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVS  466 (510)
T ss_pred             HHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEc
Confidence            3567899999997 788999999999999999999999999999999999999999999999999999987788888888


Q ss_pred             cCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcc
Q psy8397         112 HQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSA  182 (203)
Q Consensus       112 H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~  182 (203)
                      |+++                                           .+..+||++++|++|++++.++..
T Consensus       467 Hd~~-------------------------------------------~~~~~~d~i~~l~~G~i~~~~~~~  494 (510)
T PRK09700        467 SELP-------------------------------------------EIITVCDRIAVFCEGRLTQILTNR  494 (510)
T ss_pred             CCHH-------------------------------------------HHHhhCCEEEEEECCEEEEEecCc
Confidence            8864                                           467899999999999999888763

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.93  E-value=5.6e-26  Score=192.24  Aligned_cols=132  Identities=27%  Similarity=0.282  Sum_probs=111.0

Q ss_pred             ceeEEEeeecccccCCCCHhHHHh------------HHHHHHHHHHHcCCcc----cccccCCCCCHHHHHHHHHHHHHh
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILD------------TIGLVDDILDTIGLVL----SKHTLCGRLSGGQKKRLSIALELI   70 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~v~~~L~~~~L~~----~~~~~v~~LSgGqrqrl~iA~aL~   70 (203)
                      ....+||-+.+   .++|+.|+..            ..+.|+..|+...|++    .+++....||||||||++|||||+
T Consensus        89 ~vGMVFQkPnP---Fp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalA  165 (253)
T COG1117          89 RVGMVFQKPNP---FPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALA  165 (253)
T ss_pred             HheeeccCCCC---CCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHh
Confidence            34567776664   3388888653            3456888888888864    467778899999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEE
Q psy8397          71 DNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIV  150 (203)
Q Consensus        71 ~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi  150 (203)
                      .+|+|||||||||+|||.+..++-++|.+|+ +..|||++||.|.                                   
T Consensus       166 v~PeVlLmDEPtSALDPIsT~kIEeLi~eLk-~~yTIviVTHnmq-----------------------------------  209 (253)
T COG1117         166 VKPEVLLMDEPTSALDPISTLKIEELITELK-KKYTIVIVTHNMQ-----------------------------------  209 (253)
T ss_pred             cCCcEEEecCcccccCchhHHHHHHHHHHHH-hccEEEEEeCCHH-----------------------------------
Confidence            9999999999999999999999999999998 5677777777753                                   


Q ss_pred             EeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         151 CTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       151 ~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                              .+.+.+|+..++..|++++.|+.++++
T Consensus       210 --------QAaRvSD~taFf~~G~LvE~g~T~~iF  236 (253)
T COG1117         210 --------QAARVSDYTAFFYLGELVEFGPTDKIF  236 (253)
T ss_pred             --------HHHHHhHhhhhhcccEEEEEcCHHhhh
Confidence                    478899999999999999999998876

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=99.93  E-value=4.3e-25  Score=188.89  Aligned_cols=133  Identities=19%  Similarity=0.336  Sum_probs=110.6

Q ss_pred             eeEEEeeecccccCCCCHhHHHhH-----------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhc-----
Q psy8397           8 TIWCWQIISAQYSHRISVDDILDT-----------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELID-----   71 (203)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~-----   71 (203)
                      ..+.+|...  +...+|+.+++..           .+++.++++.+|+.+..++++.+||||||||++||+||+.     
T Consensus        71 i~~v~q~~~--~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~  148 (248)
T PRK03695         71 RAYLSQQQT--PPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDI  148 (248)
T ss_pred             eEEecccCc--cCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccc
Confidence            345555322  2344677765432           3467889999999988999999999999999999999997     


Q ss_pred             --CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceE
Q psy8397          72 --NPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTI  149 (203)
Q Consensus        72 --~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tv  149 (203)
                        +|++|||||||+|||+.++..+.+.|++++++|.|||++||+++                                  
T Consensus       149 ~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~----------------------------------  194 (248)
T PRK03695        149 NPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLN----------------------------------  194 (248)
T ss_pred             CCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH----------------------------------
Confidence              67999999999999999999999999999867888888888864                                  


Q ss_pred             EEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         150 VCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       150 i~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                               .+.++||++++|++|++++.|+++++.
T Consensus       195 ---------~~~~~~d~i~~l~~G~i~~~g~~~~~~  221 (248)
T PRK03695        195 ---------HTLRHADRVWLLKQGKLLASGRRDEVL  221 (248)
T ss_pred             ---------HHHHhCCEEEEEECCEEEEECCHHHHh
Confidence                     367899999999999999999887664

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=99.93  E-value=6.7e-25  Score=184.56  Aligned_cols=129  Identities=33%  Similarity=0.570  Sum_probs=105.7

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhHH---------------HHHHH-HHHHcCCcccccccCCCCCHHHHHHHHHHHHHh
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDTI---------------GLVDD-ILDTIGLVLSKHTLCGRLSGGQKKRLSIALELI   70 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~v~~-~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~   70 (203)
                      +..+.+|.  ..++..+|+.|++...               +++.+ .++.+++.+..++.+++|||||+||++|||+|+
T Consensus        82 ~i~~~~q~--~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~  159 (226)
T cd03234          82 CVAYVRQD--DILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLL  159 (226)
T ss_pred             cEEEeCCC--CccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHH
Confidence            34555554  2344567888766421               12344 788899988889999999999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEE
Q psy8397          71 DNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIV  150 (203)
Q Consensus        71 ~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi  150 (203)
                      .+|++|||||||+|||+.++..+++.++++.++|.|+|++||++.+                                  
T Consensus       160 ~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~----------------------------------  205 (226)
T cd03234         160 WDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRS----------------------------------  205 (226)
T ss_pred             hCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCH----------------------------------
Confidence            9999999999999999999999999999988667888888887631                                  


Q ss_pred             EeecCchhHHHhhcCEEEEEeCCeEEeeC
Q psy8397         151 CTIHQPSATIFEMVDHLYVIAEGHCVYKG  179 (203)
Q Consensus       151 ~~~h~~~~~i~~~~d~v~vl~~G~i~~~g  179 (203)
                              .+.++||++++|++|++++.|
T Consensus       206 --------~~~~~~d~i~~l~~G~i~~~g  226 (226)
T cd03234         206 --------DLFRLFDRILLLSSGEIVYSG  226 (226)
T ss_pred             --------HHHHhCCEEEEEeCCEEEecC
Confidence                    367899999999999998765

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=99.93  E-value=3.8e-25  Score=187.69  Aligned_cols=135  Identities=24%  Similarity=0.355  Sum_probs=113.3

Q ss_pred             CceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCC
Q psy8397           6 HGTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNP   73 (203)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P   73 (203)
                      ++..+++|..  .++..+|+.|++..            .+++.++++.+++.+..++.+++||+||+||++||++|+.+|
T Consensus        72 ~~i~~~~q~~--~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p  149 (237)
T TIGR00968        72 RKIGFVFQHY--ALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEP  149 (237)
T ss_pred             cCEEEEecCh--hhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence            3456666543  34556788776532            235678899999998899999999999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEe
Q psy8397          74 PIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCT  152 (203)
Q Consensus        74 ~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~  152 (203)
                      ++++|||||+|||+.++..+++.|+++.++ |+|||++||+++                                     
T Consensus       150 ~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~-------------------------------------  192 (237)
T TIGR00968       150 QVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQE-------------------------------------  192 (237)
T ss_pred             CEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-------------------------------------
Confidence            999999999999999999999999998765 788888888753                                     


Q ss_pred             ecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         153 IHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       153 ~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                            .+.++||+++++++|++++.|+++++.
T Consensus       193 ------~~~~~~d~i~~l~~g~i~~~~~~~~~~  219 (237)
T TIGR00968       193 ------EAMEVADRIVVMSNGKIEQIGSPDEVY  219 (237)
T ss_pred             ------HHHhhcCEEEEEECCEEEEecCHHHHH
Confidence                  367899999999999999999887664

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.93  E-value=4.7e-25  Score=188.14  Aligned_cols=133  Identities=25%  Similarity=0.292  Sum_probs=108.8

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH--------------HHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHH
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT--------------IGLVDDILDTIGLV----LSKHTLCGRLSGGQKKRLSIALE   68 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~v~~~L~~~~L~----~~~~~~v~~LSgGqrqrl~iA~a   68 (203)
                      ...+.+|..  .++..+|+.+++..              .+++.++++.+|+.    ...++++.+||||||||++||||
T Consensus        86 ~i~~~~q~~--~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lara  163 (253)
T PRK14267         86 EVGMVFQYP--NPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARA  163 (253)
T ss_pred             ceeEEecCC--ccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHH
Confidence            455666543  24456788876532              12466788888874    35788999999999999999999


Q ss_pred             HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCce
Q psy8397          69 LIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRT  148 (203)
Q Consensus        69 L~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t  148 (203)
                      |+.+|++|||||||+|||+.++..+++.|+++.+ +.|||++||+++                                 
T Consensus       164 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~---------------------------------  209 (253)
T PRK14267        164 LAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPA---------------------------------  209 (253)
T ss_pred             HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHH---------------------------------
Confidence            9999999999999999999999999999999864 578888888753                                 


Q ss_pred             EEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         149 IVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       149 vi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                                .+..+||++++|++|++++.|+++++.
T Consensus       210 ----------~~~~~~d~i~~l~~G~i~~~~~~~~~~  236 (253)
T PRK14267        210 ----------QAARVSDYVAFLYLGKLIEVGPTRKVF  236 (253)
T ss_pred             ----------HHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence                      367899999999999999999987653

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=99.93  E-value=3.2e-25  Score=187.06  Aligned_cols=118  Identities=23%  Similarity=0.361  Sum_probs=101.3

Q ss_pred             ccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Q psy8397          19 YSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLD   86 (203)
Q Consensus        19 ~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD   86 (203)
                      +...+|+.|++..            .+++.++++.+++.+..++++++||||||||++|||+|+.+|+++||||||+|||
T Consensus        95 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD  174 (224)
T cd03220          95 FNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGD  174 (224)
T ss_pred             CCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence            3445788776532            2346778889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCE
Q psy8397          87 SNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDH  166 (203)
Q Consensus        87 ~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~  166 (203)
                      +.+++.+++.|+++.++|.|||++||+++                                           .+..+||+
T Consensus       175 ~~~~~~~~~~l~~~~~~~~tiii~sH~~~-------------------------------------------~~~~~~d~  211 (224)
T cd03220         175 AAFQEKCQRRLRELLKQGKTVILVSHDPS-------------------------------------------SIKRLCDR  211 (224)
T ss_pred             HHHHHHHHHHHHHHHhCCCEEEEEeCCHH-------------------------------------------HHHHhCCE
Confidence            99999999999998866778888888753                                           36788999


Q ss_pred             EEEEeCCeEEeeC
Q psy8397         167 LYVIAEGHCVYKG  179 (203)
Q Consensus       167 v~vl~~G~i~~~g  179 (203)
                      ++++++|++++.|
T Consensus       212 i~~l~~G~i~~~g  224 (224)
T cd03220         212 ALVLEKGKIRFDG  224 (224)
T ss_pred             EEEEECCEEEecC
Confidence            9999999998765

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.93  E-value=2.9e-25  Score=188.80  Aligned_cols=133  Identities=25%  Similarity=0.267  Sum_probs=110.6

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH--------HHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhcCCCEEE
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT--------IGLVDDILDTIGLV-LSKHTLCGRLSGGQKKRLSIALELIDNPPIMF   77 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~v~~~L~~~~L~-~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLl   77 (203)
                      ...+.+|...  ++. .|+.+++..        ..++.++++.+++. +..++++.+||||||||++||+||+.+|++||
T Consensus        78 ~i~~~~q~~~--~~~-~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~lll  154 (241)
T PRK14250         78 KIGMVFQQPH--LFE-GTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLL  154 (241)
T ss_pred             cEEEEecCch--hch-hhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence            4566666532  333 577776531        24677899999996 57899999999999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCc
Q psy8397          78 LDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQP  156 (203)
Q Consensus        78 LDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~  156 (203)
                      |||||+|||+.++..+++.|++++++ |.|||++||+++                                         
T Consensus       155 lDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~-----------------------------------------  193 (241)
T PRK14250        155 LDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNME-----------------------------------------  193 (241)
T ss_pred             EeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH-----------------------------------------
Confidence            99999999999999999999999764 788888888753                                         


Q ss_pred             hhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         157 SATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       157 ~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                        .+.++||++++|++|+++..|+++++.
T Consensus       194 --~~~~~~d~i~~l~~G~i~~~~~~~~~~  220 (241)
T PRK14250        194 --QAKRIGDYTAFLNKGILVEYAKTYDFF  220 (241)
T ss_pred             --HHHHhCCEEEEEeCCEEEEeCCHHHHh
Confidence              367899999999999999999887654

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.93  E-value=6.2e-25  Score=204.33  Aligned_cols=133  Identities=21%  Similarity=0.317  Sum_probs=110.6

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH----------------HHHHHHHHHHcCCcccc-cccCCCCCHHHHHHHHHHHHH
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT----------------IGLVDDILDTIGLVLSK-HTLCGRLSGGQKKRLSIALEL   69 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~v~~~L~~~~L~~~~-~~~v~~LSgGqrqrl~iA~aL   69 (203)
                      +..+.+|..  .++..+|+.+++..                .+++.++++.+++.... ++++++|||||||||+||+||
T Consensus        79 ~i~~v~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al  156 (500)
T TIGR02633        79 GIVIIHQEL--TLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKAL  156 (500)
T ss_pred             CEEEEeecc--ccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHH
Confidence            456677653  24455777665421                23577899999998654 678999999999999999999


Q ss_pred             hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceE
Q psy8397          70 IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTI  149 (203)
Q Consensus        70 ~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tv  149 (203)
                      +.+|++|||||||+|||+.++..+++.|++++++|.|||++||+++                                  
T Consensus       157 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~----------------------------------  202 (500)
T TIGR02633       157 NKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLN----------------------------------  202 (500)
T ss_pred             hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH----------------------------------
Confidence            9999999999999999999999999999999877888888888854                                  


Q ss_pred             EEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccc
Q psy8397         150 VCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANT  184 (203)
Q Consensus       150 i~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~  184 (203)
                               .+..+||++++|++|++++.|+++++
T Consensus       203 ---------~~~~~~d~i~~l~~G~i~~~~~~~~~  228 (500)
T TIGR02633       203 ---------EVKAVCDTICVIRDGQHVATKDMSTM  228 (500)
T ss_pred             ---------HHHHhCCEEEEEeCCeEeeecCcccC
Confidence                     46789999999999999999988765

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=99.93  E-value=6.1e-25  Score=188.74  Aligned_cols=132  Identities=24%  Similarity=0.233  Sum_probs=108.3

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH-------------HHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHHH
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT-------------IGLVDDILDTIGLV----LSKHTLCGRLSGGQKKRLSIALEL   69 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~v~~~L~~~~L~----~~~~~~v~~LSgGqrqrl~iA~aL   69 (203)
                      ...+.+|...  ++. .|+.+++..             .+++.++++.+++.    ...++++.+||||||||++|||||
T Consensus        95 ~i~~~~q~~~--~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral  171 (260)
T PRK10744         95 KVGMVFQKPT--PFP-MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGI  171 (260)
T ss_pred             ceEEEecCCc--cCc-CcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHH
Confidence            4556666432  333 677776531             24577889999974    457889999999999999999999


Q ss_pred             hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceE
Q psy8397          70 IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTI  149 (203)
Q Consensus        70 ~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tv  149 (203)
                      +.+|++|||||||+|||+.++..+++.|+++. ++.|||++||+++                                  
T Consensus       172 ~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~~~tiii~sH~~~----------------------------------  216 (260)
T PRK10744        172 AIRPEVLLLDEPCSALDPISTGRIEELITELK-QDYTVVIVTHNMQ----------------------------------  216 (260)
T ss_pred             HCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH----------------------------------
Confidence            99999999999999999999999999999986 4678888888853                                  


Q ss_pred             EEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         150 VCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       150 i~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                               .+..+||++++|++|+++..|+++++.
T Consensus       217 ---------~~~~~~d~i~~l~~G~i~~~g~~~~~~  243 (260)
T PRK10744        217 ---------QAARCSDYTAFMYLGELIEFGNTDTIF  243 (260)
T ss_pred             ---------HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence                     367899999999999999999887653

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=99.93  E-value=6.7e-25  Score=186.86  Aligned_cols=108  Identities=20%  Similarity=0.295  Sum_probs=95.2

Q ss_pred             HHHHHHHHHcCCc-ccccccCC-CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEE
Q psy8397          33 GLVDDILDTIGLV-LSKHTLCG-RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCT  110 (203)
Q Consensus        33 ~~v~~~L~~~~L~-~~~~~~v~-~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~  110 (203)
                      +++.++++.+|+. ...++++. .||||||||++||+||+.+|++|||||||+|||+.++..+++.|+++.++|.|||++
T Consensus       128 ~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~  207 (252)
T CHL00131        128 EIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILI  207 (252)
T ss_pred             HHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence            4567889999997 46788887 599999999999999999999999999999999999999999999998668888888


Q ss_pred             ecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhh-cCEEEEEeCCeEEeeCCccc
Q psy8397         111 IHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEM-VDHLYVIAEGHCVYKGSSAN  183 (203)
Q Consensus       111 tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~-~d~v~vl~~G~i~~~g~~~~  183 (203)
                      ||+++                                           .+... ||++++|++|++++.|+++.
T Consensus       208 tH~~~-------------------------------------------~~~~~~~d~i~~l~~G~i~~~~~~~~  238 (252)
T CHL00131        208 THYQR-------------------------------------------LLDYIKPDYVHVMQNGKIIKTGDAEL  238 (252)
T ss_pred             ecCHH-------------------------------------------HHHhhhCCEEEEEeCCEEEEecChhh
Confidence            88854                                           24455 89999999999999998873

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=99.93  E-value=8.2e-25  Score=186.32  Aligned_cols=132  Identities=22%  Similarity=0.219  Sum_probs=107.3

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH-------------HHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHHH
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT-------------IGLVDDILDTIGLV----LSKHTLCGRLSGGQKKRLSIALEL   69 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~v~~~L~~~~L~----~~~~~~v~~LSgGqrqrl~iA~aL   69 (203)
                      ...+.+|...  +++ .|+.|++..             .+++.++++.+++.    +..++++.+||||||||++||+||
T Consensus        87 ~i~~v~q~~~--~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral  163 (252)
T PRK14239         87 EIGMVFQQPN--PFP-MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVL  163 (252)
T ss_pred             cEEEEecCCc--cCc-CcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHH
Confidence            4566666432  333 688876532             23455678888874    356889999999999999999999


Q ss_pred             hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceE
Q psy8397          70 IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTI  149 (203)
Q Consensus        70 ~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tv  149 (203)
                      +.+|++|||||||+|||+.++..+++.|+++.+ +.|||++||+++                                  
T Consensus       164 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~----------------------------------  208 (252)
T PRK14239        164 ATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSMQ----------------------------------  208 (252)
T ss_pred             hcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCHH----------------------------------
Confidence            999999999999999999999999999999864 578888888864                                  


Q ss_pred             EEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         150 VCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       150 i~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                               .+..+||++++|++|++++.|+++++.
T Consensus       209 ---------~~~~~~d~i~~l~~G~i~~~g~~~~~~  235 (252)
T PRK14239        209 ---------QASRISDRTGFFLDGDLIEYNDTKQMF  235 (252)
T ss_pred             ---------HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence                     367899999999999999999887764

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.93  E-value=1e-24  Score=186.25  Aligned_cols=133  Identities=23%  Similarity=0.260  Sum_probs=108.8

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH-------------HHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHHH
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT-------------IGLVDDILDTIGLV----LSKHTLCGRLSGGQKKRLSIALEL   69 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~v~~~L~~~~L~----~~~~~~v~~LSgGqrqrl~iA~aL   69 (203)
                      ...+.+|..  .++..+|+.|++..             .+++.++++.+++.    +..++.+++||||||||++||+||
T Consensus        86 ~i~~~~q~~--~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral  163 (252)
T PRK14256         86 RVGMVFQKP--NPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTI  163 (252)
T ss_pred             cEEEEecCC--CCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHH
Confidence            455666643  24456787776532             23567788889985    356788999999999999999999


Q ss_pred             hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceE
Q psy8397          70 IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTI  149 (203)
Q Consensus        70 ~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tv  149 (203)
                      +.+|++|||||||+|||+.++..+++.|+++.+ +.|||++||+++                                  
T Consensus       164 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~----------------------------------  208 (252)
T PRK14256        164 AVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNMQ----------------------------------  208 (252)
T ss_pred             hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHH----------------------------------
Confidence            999999999999999999999999999999974 578888888753                                  


Q ss_pred             EEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         150 VCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       150 i~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                               .+.++||++++|.+|+++..|+++++.
T Consensus       209 ---------~~~~~~d~i~~l~~G~i~~~~~~~~~~  235 (252)
T PRK14256        209 ---------QAARVSDYTAFFYMGDLVECGETKKIF  235 (252)
T ss_pred             ---------HHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence                     367899999999999999999987654

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.92  E-value=4.3e-25  Score=188.28  Aligned_cols=132  Identities=23%  Similarity=0.234  Sum_probs=107.9

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH-------------HHHHHHHHHHcCCcc----cccccCCCCCHHHHHHHHHHHHH
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT-------------IGLVDDILDTIGLVL----SKHTLCGRLSGGQKKRLSIALEL   69 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~v~~~L~~~~L~~----~~~~~v~~LSgGqrqrl~iA~aL   69 (203)
                      +..|.+|...  ++. .|+.+++..             .+++.++++.+|+.+    ..++++.+||||||||++|||||
T Consensus        85 ~i~~v~q~~~--~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral  161 (250)
T PRK14245         85 NVGMVFQRPN--PFP-KSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAM  161 (250)
T ss_pred             heEEEecCCc--cCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHH
Confidence            4566665432  233 477765431             234677889999853    56889999999999999999999


Q ss_pred             hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceE
Q psy8397          70 IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTI  149 (203)
Q Consensus        70 ~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tv  149 (203)
                      +.+|++|||||||+|||+.++..+++.|+++. +|.|||++||+++                                  
T Consensus       162 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~----------------------------------  206 (250)
T PRK14245        162 AVSPSVLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNMQ----------------------------------  206 (250)
T ss_pred             hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH----------------------------------
Confidence            99999999999999999999999999999985 4688888888864                                  


Q ss_pred             EEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         150 VCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       150 i~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                               .+.++||++++|++|++++.|+++++.
T Consensus       207 ---------~~~~~~d~v~~l~~G~~~~~~~~~~~~  233 (250)
T PRK14245        207 ---------QAARVSDKTAFFYMGEMVEYDDTKKIF  233 (250)
T ss_pred             ---------HHHhhCCEEEEEECCEEEEECCHHHHh
Confidence                     367899999999999999999988764

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.92  E-value=4.4e-25  Score=188.63  Aligned_cols=132  Identities=25%  Similarity=0.265  Sum_probs=108.1

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH-------------HHHHHHHHHHcCC----cccccccCCCCCHHHHHHHHHHHHH
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT-------------IGLVDDILDTIGL----VLSKHTLCGRLSGGQKKRLSIALEL   69 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~v~~~L~~~~L----~~~~~~~v~~LSgGqrqrl~iA~aL   69 (203)
                      ...+.+|...  ++ .+|+.|++..             .+++.++++.+++    .+..++++++||||||||++|||+|
T Consensus        89 ~i~~v~q~~~--~~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral  165 (254)
T PRK14273         89 KIGMVFQTPN--PF-LMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTL  165 (254)
T ss_pred             ceEEEeeccc--cc-cCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHH
Confidence            3556665432  23 3788876532             2346677888887    4567899999999999999999999


Q ss_pred             hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceE
Q psy8397          70 IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTI  149 (203)
Q Consensus        70 ~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tv  149 (203)
                      +.+|++|||||||+|||+.++..+++.|+++++ +.|||++||+++                                  
T Consensus       166 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~sH~~~----------------------------------  210 (254)
T PRK14273        166 AIEPNVILMDEPTSALDPISTGKIEELIINLKE-SYTIIIVTHNMQ----------------------------------  210 (254)
T ss_pred             HcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH----------------------------------
Confidence            999999999999999999999999999999964 678888888864                                  


Q ss_pred             EEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         150 VCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       150 i~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                               .+.++||++++|++|+++..|+++++.
T Consensus       211 ---------~~~~~~d~i~~l~~G~i~~~g~~~~~~  237 (254)
T PRK14273        211 ---------QAGRISDRTAFFLNGCIEEESSTDELF  237 (254)
T ss_pred             ---------HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence                     367889999999999999999987764

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.92  E-value=7.6e-25  Score=190.57  Aligned_cols=110  Identities=25%  Similarity=0.395  Sum_probs=99.0

Q ss_pred             HHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q psy8397          33 GLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELI---------DNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG  103 (203)
Q Consensus        33 ~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~---------~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~  103 (203)
                      +++.++++.+|+....++++.+||||||||++|||+|+         .+|++|||||||+|||+.++..+++.|+++.++
T Consensus       124 ~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~  203 (272)
T PRK13547        124 EIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARD  203 (272)
T ss_pred             HHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHh
Confidence            35778899999998899999999999999999999999         499999999999999999999999999999865


Q ss_pred             -CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcc
Q psy8397         104 -GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSA  182 (203)
Q Consensus       104 -g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~  182 (203)
                       |.|||++||+++                                           .+.++||++++|.+|++++.|+++
T Consensus       204 ~~~tviiisH~~~-------------------------------------------~~~~~~d~i~~l~~G~i~~~g~~~  240 (272)
T PRK13547        204 WNLGVLAIVHDPN-------------------------------------------LAARHADRIAMLADGAIVAHGAPA  240 (272)
T ss_pred             cCCEEEEEECCHH-------------------------------------------HHHHhCCEEEEEECCeEEEecCHH
Confidence             778888888753                                           367899999999999999999987


Q ss_pred             cch
Q psy8397         183 NTI  185 (203)
Q Consensus       183 ~~~  185 (203)
                      ++.
T Consensus       241 ~~~  243 (272)
T PRK13547        241 DVL  243 (272)
T ss_pred             HHc
Confidence            764

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.92  E-value=6.7e-25  Score=204.11  Aligned_cols=109  Identities=25%  Similarity=0.432  Sum_probs=97.7

Q ss_pred             HHHHHHHHHcCCcc-cccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEe
Q psy8397          33 GLVDDILDTIGLVL-SKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTI  111 (203)
Q Consensus        33 ~~v~~~L~~~~L~~-~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~t  111 (203)
                      +++.++++.+++.. ..++++++||||||||++|||+|+.+|++|||||||+|||+.++..+++.|++++++|.|||++|
T Consensus       381 ~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivs  460 (500)
T TIGR02633       381 QIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVS  460 (500)
T ss_pred             HHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEEC
Confidence            35778999999974 68999999999999999999999999999999999999999999999999999987788888888


Q ss_pred             cCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccc
Q psy8397         112 HQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANT  184 (203)
Q Consensus       112 H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~  184 (203)
                      |+++                                           .+.++||+++++.+|+++..++.+++
T Consensus       461 Hd~~-------------------------------------------~~~~~~d~v~~l~~G~i~~~~~~~~~  490 (500)
T TIGR02633       461 SELA-------------------------------------------EVLGLSDRVLVIGEGKLKGDFVNHAL  490 (500)
T ss_pred             CCHH-------------------------------------------HHHHhCCEEEEEECCEEEEEEccccC
Confidence            8864                                           47789999999999999988876543

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=99.92  E-value=1.1e-24  Score=186.79  Aligned_cols=133  Identities=25%  Similarity=0.273  Sum_probs=108.2

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH-------------HHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHHH
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT-------------IGLVDDILDTIGLV----LSKHTLCGRLSGGQKKRLSIALEL   69 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~v~~~L~~~~L~----~~~~~~v~~LSgGqrqrl~iA~aL   69 (203)
                      ...+.+|..  .++..+|+.+++..             .+++.++++.+|+.    +..++++.+||||||||++|||||
T Consensus        86 ~i~~~~q~~--~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral  163 (258)
T PRK14241         86 TIGMVFQRP--NPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAI  163 (258)
T ss_pred             ceEEEcccc--ccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHH
Confidence            345556532  23456788876531             23566788888884    467889999999999999999999


Q ss_pred             hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceE
Q psy8397          70 IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTI  149 (203)
Q Consensus        70 ~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tv  149 (203)
                      +.+|++|||||||+|||+.++..+++.|+++++ +.|||++||+++                                  
T Consensus       164 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tviivsH~~~----------------------------------  208 (258)
T PRK14241        164 AVEPDVLLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHNMQ----------------------------------  208 (258)
T ss_pred             hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH----------------------------------
Confidence            999999999999999999999999999999864 578888888864                                  


Q ss_pred             EEeecCchhHHHhhcCEEEEEe------CCeEEeeCCcccch
Q psy8397         150 VCTIHQPSATIFEMVDHLYVIA------EGHCVYKGSSANTI  185 (203)
Q Consensus       150 i~~~h~~~~~i~~~~d~v~vl~------~G~i~~~g~~~~~~  185 (203)
                               .+.++||++++++      +|++++.|+++++.
T Consensus       209 ---------~~~~~~d~i~~l~~~~~~~~g~i~~~~~~~~~~  241 (258)
T PRK14241        209 ---------QAARVSDQTAFFNLEATGKPGRLVEIDDTEKIF  241 (258)
T ss_pred             ---------HHHHhCCEEEEEecccCCCCceEEecCCHHHHH
Confidence                     3678999999997      79999999987764

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.92  E-value=1.3e-24  Score=186.92  Aligned_cols=132  Identities=24%  Similarity=0.294  Sum_probs=107.6

Q ss_pred             eeEEEeeecccccCCCCHhHHHhH-------------HHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHHHh
Q psy8397           8 TIWCWQIISAQYSHRISVDDILDT-------------IGLVDDILDTIGLV----LSKHTLCGRLSGGQKKRLSIALELI   70 (203)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~v~~~L~~~~L~----~~~~~~v~~LSgGqrqrl~iA~aL~   70 (203)
                      ..+.+|...  +++ .|+.|++..             .+++.++++.+++.    +..++++.+||||||||++|||+|+
T Consensus        90 i~~~~q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~  166 (261)
T PRK14258         90 VSMVHPKPN--LFP-MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALA  166 (261)
T ss_pred             EEEEecCCc--cCc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHh
Confidence            445555322  334 788776531             23467788888874    3568899999999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceE
Q psy8397          71 DNPPIMFLDEPTTGLDSNSTNQCVAMLKALAR-GGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTI  149 (203)
Q Consensus        71 ~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~-~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tv  149 (203)
                      .+|++|||||||+|||+.++..+++.|++++. +|.|||++||+++                                  
T Consensus       167 ~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~----------------------------------  212 (261)
T PRK14258        167 VKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLH----------------------------------  212 (261)
T ss_pred             cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH----------------------------------
Confidence            99999999999999999999999999999875 4778888888753                                  


Q ss_pred             EEeecCchhHHHhhcCEEEEEeC-----CeEEeeCCcccch
Q psy8397         150 VCTIHQPSATIFEMVDHLYVIAE-----GHCVYKGSSANTI  185 (203)
Q Consensus       150 i~~~h~~~~~i~~~~d~v~vl~~-----G~i~~~g~~~~~~  185 (203)
                               .+.++||++++|++     |++++.|+++++.
T Consensus       213 ---------~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~~  244 (261)
T PRK14258        213 ---------QVSRLSDFTAFFKGNENRIGQLVEFGLTKKIF  244 (261)
T ss_pred             ---------HHHHhcCEEEEEccCCCcCceEEEeCCHHHHH
Confidence                     47789999999999     9999999998764

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=99.92  E-value=8.4e-25  Score=188.02  Aligned_cols=119  Identities=21%  Similarity=0.353  Sum_probs=102.1

Q ss_pred             CCHhHHHh-----HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHH
Q psy8397          23 ISVDDILD-----TIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAML   97 (203)
Q Consensus        23 ~~~~~~~~-----~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l   97 (203)
                      .++.++..     ..+++.++++.+|+.+..++++.+||||||||++||+||+.+|++|||||||+|||+.++..+++.|
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L  163 (251)
T PRK09544         84 LTVNRFLRLRPGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLI  163 (251)
T ss_pred             hhHHHHHhccccccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHH
Confidence            35655432     1356788999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEE
Q psy8397          98 KALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCV  176 (203)
Q Consensus        98 ~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~  176 (203)
                      +++.++ |.|||++||+++                                           .+.++||++++|++ +++
T Consensus       164 ~~~~~~~g~tiiivsH~~~-------------------------------------------~i~~~~d~i~~l~~-~i~  199 (251)
T PRK09544        164 DQLRRELDCAVLMVSHDLH-------------------------------------------LVMAKTDEVLCLNH-HIC  199 (251)
T ss_pred             HHHHHhcCCEEEEEecCHH-------------------------------------------HHHHhCCEEEEECC-ceE
Confidence            998765 778888888754                                           46788999999965 788


Q ss_pred             eeCCcccch
Q psy8397         177 YKGSSANTI  185 (203)
Q Consensus       177 ~~g~~~~~~  185 (203)
                      ..|+++++.
T Consensus       200 ~~g~~~~~~  208 (251)
T PRK09544        200 CSGTPEVVS  208 (251)
T ss_pred             eeCCHHHHh
Confidence            999887664

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=99.92  E-value=7.4e-25  Score=185.99  Aligned_cols=118  Identities=31%  Similarity=0.427  Sum_probs=101.3

Q ss_pred             ccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Q psy8397          19 YSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLD   86 (203)
Q Consensus        19 ~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD   86 (203)
                      ++..+|+.|++..            .+++.++++.+|+.+..++++.+||||||||++||+||+.+|++|||||||+|||
T Consensus       106 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD  185 (236)
T cd03267         106 LWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLD  185 (236)
T ss_pred             cCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Confidence            4456788876421            2346778999999988999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcC
Q psy8397          87 SNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVD  165 (203)
Q Consensus        87 ~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d  165 (203)
                      +.+++.+.+.|++++++ |.|||++||+++                                           .+..+||
T Consensus       186 ~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-------------------------------------------~~~~~~d  222 (236)
T cd03267         186 VVAQENIRNFLKEYNRERGTTVLLTSHYMK-------------------------------------------DIEALAR  222 (236)
T ss_pred             HHHHHHHHHHHHHHHhcCCCEEEEEecCHH-------------------------------------------HHHHhCC
Confidence            99999999999999764 778888888753                                           3678999


Q ss_pred             EEEEEeCCeEEeeC
Q psy8397         166 HLYVIAEGHCVYKG  179 (203)
Q Consensus       166 ~v~vl~~G~i~~~g  179 (203)
                      +++++.+|++++.|
T Consensus       223 ~i~~l~~G~i~~~g  236 (236)
T cd03267         223 RVLVIDKGRLLYDG  236 (236)
T ss_pred             EEEEEeCCEEEecC
Confidence            99999999998765

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.92  E-value=1.4e-24  Score=202.34  Aligned_cols=130  Identities=25%  Similarity=0.354  Sum_probs=109.1

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH---------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhc
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT---------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELID   71 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~   71 (203)
                      +..+.+|..  .++..+|+.+++..               .+++.++++.+|+....++++.+||||||||++||++|+.
T Consensus        80 ~i~~v~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~  157 (501)
T PRK11288         80 GVAIIYQEL--HLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALAR  157 (501)
T ss_pred             CEEEEEech--hccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHh
Confidence            456667643  24456777765421               3467889999999888899999999999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEE
Q psy8397          72 NPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVC  151 (203)
Q Consensus        72 ~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~  151 (203)
                      +|++|||||||+|||+.++..+++.|+++.++|.|||++||+++                                    
T Consensus       158 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~------------------------------------  201 (501)
T PRK11288        158 NARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRME------------------------------------  201 (501)
T ss_pred             CCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH------------------------------------
Confidence            99999999999999999999999999999866788888888754                                    


Q ss_pred             eecCchhHHHhhcCEEEEEeCCeEEeeCCc
Q psy8397         152 TIHQPSATIFEMVDHLYVIAEGHCVYKGSS  181 (203)
Q Consensus       152 ~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~  181 (203)
                             .+..+||++++|++|+++..++.
T Consensus       202 -------~~~~~~d~i~~l~~G~i~~~~~~  224 (501)
T PRK11288        202 -------EIFALCDAITVFKDGRYVATFDD  224 (501)
T ss_pred             -------HHHHhCCEEEEEECCEEEeecCc
Confidence                   36789999999999999877654

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.92  E-value=1.7e-24  Score=184.33  Aligned_cols=133  Identities=26%  Similarity=0.295  Sum_probs=106.5

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH-------------HHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHHH
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT-------------IGLVDDILDTIGLV----LSKHTLCGRLSGGQKKRLSIALEL   69 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~v~~~L~~~~L~----~~~~~~v~~LSgGqrqrl~iA~aL   69 (203)
                      +..+.+|..  .++..+|+.|++..             .+++.++++.+++.    +..++++++||||||||++||++|
T Consensus        86 ~i~~~~q~~--~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral  163 (252)
T PRK14272         86 RVGMVFQKP--NPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARAL  163 (252)
T ss_pred             eeEEEeccC--ccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHH
Confidence            456677643  24455788776532             12234456666653    456889999999999999999999


Q ss_pred             hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceE
Q psy8397          70 IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTI  149 (203)
Q Consensus        70 ~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tv  149 (203)
                      +.+|++|+|||||+|||+.++..+.+.|+++++ +.|+|++||+++                                  
T Consensus       164 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~----------------------------------  208 (252)
T PRK14272        164 AVEPEILLMDEPTSALDPASTARIEDLMTDLKK-VTTIIIVTHNMH----------------------------------  208 (252)
T ss_pred             hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH----------------------------------
Confidence            999999999999999999999999999999864 688888888864                                  


Q ss_pred             EEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         150 VCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       150 i~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                               .+..+||++++|++|++++.|+++++.
T Consensus       209 ---------~~~~~~d~i~~l~~G~i~~~~~~~~~~  235 (252)
T PRK14272        209 ---------QAARVSDTTSFFLVGDLVEHGPTDQLF  235 (252)
T ss_pred             ---------HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence                     367799999999999999999987664

>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.92  E-value=5.1e-25  Score=180.69  Aligned_cols=121  Identities=28%  Similarity=0.426  Sum_probs=109.1

Q ss_pred             CCCCHhHHHh-------------HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Q psy8397          21 HRISVDDILD-------------TIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDS   87 (203)
Q Consensus        21 ~~~~~~~~~~-------------~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~   87 (203)
                      +.+||-|++-             .+.++.++|+.+.|.+++|+.+-.|||||+|||+|||||+++|++|++||||++|||
T Consensus        95 phltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpqvllfdeptaaldp  174 (242)
T COG4161          95 PHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDP  174 (242)
T ss_pred             chhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCCcEEeecCcccccCH
Confidence            4588887652             356788999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEE
Q psy8397          88 NSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHL  167 (203)
Q Consensus        88 ~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v  167 (203)
                      +-...+.++|++|+..|.|=+++||..+                                           .+.+.+.++
T Consensus       175 eitaqvv~iikel~~tgitqvivthev~-------------------------------------------va~k~as~v  211 (242)
T COG4161         175 EITAQIVSIIKELAETGITQVIVTHEVE-------------------------------------------VARKTASRV  211 (242)
T ss_pred             HHHHHHHHHHHHHHhcCceEEEEEeehh-------------------------------------------HHHhhhhhe
Confidence            9999999999999988999999999854                                           367789999


Q ss_pred             EEEeCCeEEeeCCcccc
Q psy8397         168 YVIAEGHCVYKGSSANT  184 (203)
Q Consensus       168 ~vl~~G~i~~~g~~~~~  184 (203)
                      +.|.+|+|+..|+.+.+
T Consensus       212 vyme~g~ive~g~a~~f  228 (242)
T COG4161         212 VYMENGHIVEQGDASCF  228 (242)
T ss_pred             EeeecCeeEeecchhhc
Confidence            99999999999987654

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=99.92  E-value=1.9e-24  Score=183.50  Aligned_cols=110  Identities=22%  Similarity=0.298  Sum_probs=95.3

Q ss_pred             HHHHHHHHHHcCCc-ccccccCC-CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEE
Q psy8397          32 IGLVDDILDTIGLV-LSKHTLCG-RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVC  109 (203)
Q Consensus        32 ~~~v~~~L~~~~L~-~~~~~~v~-~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~  109 (203)
                      ..++.++++.+++. ...++++. +||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++.|.|||+
T Consensus       121 ~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii  200 (248)
T PRK09580        121 QDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFII  200 (248)
T ss_pred             HHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence            44667888999995 56677775 79999999999999999999999999999999999999999999999866788888


Q ss_pred             EecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhh-cCEEEEEeCCeEEeeCCcccc
Q psy8397         110 TIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEM-VDHLYVIAEGHCVYKGSSANT  184 (203)
Q Consensus       110 ~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~-~d~v~vl~~G~i~~~g~~~~~  184 (203)
                      +||+++                                           .+... +|+++++++|++++.|+++.+
T Consensus       201 ~sH~~~-------------------------------------------~~~~~~~d~i~~l~~g~i~~~g~~~~~  233 (248)
T PRK09580        201 VTHYQR-------------------------------------------ILDYIKPDYVHVLYQGRIVKSGDFTLV  233 (248)
T ss_pred             EeCCHH-------------------------------------------HHHhhhCCEEEEEECCeEEEeCCHHHH
Confidence            888853                                           24555 899999999999999988744

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.92  E-value=1.2e-24  Score=185.20  Aligned_cols=137  Identities=25%  Similarity=0.422  Sum_probs=114.3

Q ss_pred             CCceeEEEeeecccccCCCCHhHHHhHH----------HH-HHHHHHHc-CCcccccccCCCCCHHHHHHHHHHHHHhcC
Q psy8397           5 NHGTIWCWQIISAQYSHRISVDDILDTI----------GL-VDDILDTI-GLVLSKHTLCGRLSGGQKKRLSIALELIDN   72 (203)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~-v~~~L~~~-~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~   72 (203)
                      ..|..|++|.-  ..++++||+|++..-          ++ ++++.+.| .|.+.++++.++|||||||.++|||||+.+
T Consensus        77 r~Gi~~VPegR--~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~  154 (237)
T COG0410          77 RLGIAYVPEGR--RIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSR  154 (237)
T ss_pred             hCCeEeCcccc--cchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcC
Confidence            35778888643  467899999998631          11 56677777 477889999999999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEE
Q psy8397          73 PPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVC  151 (203)
Q Consensus        73 P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~  151 (203)
                      |++|+|||||.||-|.-.+++++.|++++++ |.||+++.++                                      
T Consensus       155 PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn--------------------------------------  196 (237)
T COG0410         155 PKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQN--------------------------------------  196 (237)
T ss_pred             CCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEecc--------------------------------------
Confidence            9999999999999999999999999999953 4555555554                                      


Q ss_pred             eecCchhHHHhhcCEEEEEeCCeEEeeCCcccchh
Q psy8397         152 TIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTIP  186 (203)
Q Consensus       152 ~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~~  186 (203)
                          .. .+.+++||.++|.+|+|+++|+.+++..
T Consensus       197 ----~~-~Al~iaDr~yvle~Griv~~G~~~eL~~  226 (237)
T COG0410         197 ----AR-FALEIADRGYVLENGRIVLSGTAAELLA  226 (237)
T ss_pred             ----HH-HHHHhhCEEEEEeCCEEEEecCHHHHhc
Confidence                33 4788999999999999999999988763

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.92  E-value=1.2e-24  Score=185.63  Aligned_cols=132  Identities=23%  Similarity=0.304  Sum_probs=106.8

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH--------------HHHHHHHHHHcCCcc----cccccCCCCCHHHHHHHHHHHH
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT--------------IGLVDDILDTIGLVL----SKHTLCGRLSGGQKKRLSIALE   68 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~v~~~L~~~~L~~----~~~~~v~~LSgGqrqrl~iA~a   68 (203)
                      +..|.+|...  ++.. |+.+++..              .+.+.++++.+|+.+    ..++++.+||||||||++|||+
T Consensus        87 ~i~~v~q~~~--~~~~-tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~lara  163 (251)
T PRK14244         87 KVGMVFQKPN--PFPK-SIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARA  163 (251)
T ss_pred             hEEEEecCcc--cccC-CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHH
Confidence            4566776432  2233 66665421              234567889999864    4678899999999999999999


Q ss_pred             HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCce
Q psy8397          69 LIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRT  148 (203)
Q Consensus        69 L~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t  148 (203)
                      |+.+|++|||||||+|||+.++..+++.|+++. +|.|||++||+++                                 
T Consensus       164 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiiisH~~~---------------------------------  209 (251)
T PRK14244        164 IAVKPTMLLMDEPCSALDPVATNVIENLIQELK-KNFTIIVVTHSMK---------------------------------  209 (251)
T ss_pred             HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH---------------------------------
Confidence            999999999999999999999999999999985 4788888888864                                 


Q ss_pred             EEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         149 IVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       149 vi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                                .+..+||++++|++|++++.|+++++.
T Consensus       210 ----------~~~~~~d~i~~l~~G~i~~~~~~~~~~  236 (251)
T PRK14244        210 ----------QAKKVSDRVAFFQSGRIVEYNTTQEIF  236 (251)
T ss_pred             ----------HHHhhcCEEEEEECCEEEEeCCHHHHh
Confidence                      367889999999999999999887654

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.92  E-value=2.7e-24  Score=183.17  Aligned_cols=133  Identities=26%  Similarity=0.342  Sum_probs=107.9

Q ss_pred             CceeEEEeeecccccCCCCHhHHHhH-------------HHHHHHHHHHcCCcc----cccccCCCCCHHHHHHHHHHHH
Q psy8397           6 HGTIWCWQIISAQYSHRISVDDILDT-------------IGLVDDILDTIGLVL----SKHTLCGRLSGGQKKRLSIALE   68 (203)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~v~~~L~~~~L~~----~~~~~v~~LSgGqrqrl~iA~a   68 (203)
                      ....+.+|...  ++. .|+.+++..             .+.+.++++.+++..    ..++++.+||||||||++||+|
T Consensus        84 ~~i~~~~q~~~--~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~a  160 (250)
T PRK14262         84 KKVGMVFQKPT--PFP-MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARA  160 (250)
T ss_pred             hhEEEEecCCc--cCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHH
Confidence            34566666432  333 688776542             123566788888853    4788999999999999999999


Q ss_pred             HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCce
Q psy8397          69 LIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRT  148 (203)
Q Consensus        69 L~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t  148 (203)
                      |+.+|++|+|||||+|||+.++..+++.|+++.+ ++|||++||+++                                 
T Consensus       161 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~~---------------------------------  206 (250)
T PRK14262        161 LAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNIG---------------------------------  206 (250)
T ss_pred             HhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCHH---------------------------------
Confidence            9999999999999999999999999999999864 678888888853                                 


Q ss_pred             EEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         149 IVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       149 vi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                                .+..+||+++++++|+++..|+++++.
T Consensus       207 ----------~~~~~~d~i~~l~~G~i~~~g~~~~~~  233 (250)
T PRK14262        207 ----------QAIRIADYIAFMYRGELIEYGPTREIV  233 (250)
T ss_pred             ----------HHHHhCCEEEEEECCEEEEecCHHHHH
Confidence                      367889999999999999999987664

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.92  E-value=1.3e-24  Score=185.15  Aligned_cols=132  Identities=27%  Similarity=0.290  Sum_probs=108.2

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH--------------HHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHH
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT--------------IGLVDDILDTIGLV----LSKHTLCGRLSGGQKKRLSIALE   68 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~v~~~L~~~~L~----~~~~~~v~~LSgGqrqrl~iA~a   68 (203)
                      ...+.+|...  ++. .|+.|++..              .+++.++++.+++.    ...++++.+||||||||++||||
T Consensus        80 ~i~~~~q~~~--l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lara  156 (246)
T PRK14269         80 NVGMVFQQPN--VFV-KSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARA  156 (246)
T ss_pred             hEEEEecCCc--ccc-ccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHH
Confidence            3556666432  233 588776521              22467789999994    45688899999999999999999


Q ss_pred             HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCce
Q psy8397          69 LIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRT  148 (203)
Q Consensus        69 L~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t  148 (203)
                      |+.+|++++|||||+|||+.++..+.+.|+++.+ |.|+|++||+++                                 
T Consensus       157 l~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~---------------------------------  202 (246)
T PRK14269        157 LAIKPKLLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTHNMQ---------------------------------  202 (246)
T ss_pred             HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH---------------------------------
Confidence            9999999999999999999999999999999864 788888888864                                 


Q ss_pred             EEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         149 IVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       149 vi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                                .+..+||++++|++|++++.|+++++.
T Consensus       203 ----------~~~~~~d~i~~l~~G~i~~~g~~~~~~  229 (246)
T PRK14269        203 ----------QGKRVADYTAFFHLGELIEFGESKEFF  229 (246)
T ss_pred             ----------HHHhhCcEEEEEECCEEEEECCHHHHH
Confidence                      367899999999999999999887654

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.92  E-value=2.5e-24  Score=183.50  Aligned_cols=133  Identities=23%  Similarity=0.263  Sum_probs=107.8

Q ss_pred             CceeEEEeeecccccCCCCHhHHHhH-------------HHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHH
Q psy8397           6 HGTIWCWQIISAQYSHRISVDDILDT-------------IGLVDDILDTIGLV----LSKHTLCGRLSGGQKKRLSIALE   68 (203)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~v~~~L~~~~L~----~~~~~~v~~LSgGqrqrl~iA~a   68 (203)
                      .+..+.+|...  ++. .|+.+++..             .+++.++++.+++.    ...++++.+||||||||++||||
T Consensus        85 ~~i~~~~q~~~--~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~lara  161 (251)
T PRK14251         85 KEVGMVFQQPT--PFP-FSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARA  161 (251)
T ss_pred             ccEEEEecCCc--cCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHH
Confidence            34556666432  333 688876542             13456788888984    45688999999999999999999


Q ss_pred             HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCce
Q psy8397          69 LIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRT  148 (203)
Q Consensus        69 L~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t  148 (203)
                      |+.+|+++||||||+|||+.++..+++.|+++.+ +.|||++||+++                                 
T Consensus       162 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~---------------------------------  207 (251)
T PRK14251        162 LAVRPKVVLLDEPTSALDPISSSEIEETLMELKH-QYTFIMVTHNLQ---------------------------------  207 (251)
T ss_pred             HhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc-CCeEEEEECCHH---------------------------------
Confidence            9999999999999999999999999999999864 678888888753                                 


Q ss_pred             EEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         149 IVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       149 vi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                                .+.++||++++|++|+++..|+++++.
T Consensus       208 ----------~~~~~~d~i~~l~~G~i~~~~~~~~~~  234 (251)
T PRK14251        208 ----------QAGRISDQTAFLMNGDLIEAGPTEEMF  234 (251)
T ss_pred             ----------HHHhhcCEEEEEECCEEEEeCCHHHHH
Confidence                      367889999999999999999887653

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.92  E-value=1.5e-24  Score=185.95  Aligned_cols=108  Identities=31%  Similarity=0.396  Sum_probs=95.5

Q ss_pred             HHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEE
Q psy8397          34 LVDDILDTIGLV----LSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVC  109 (203)
Q Consensus        34 ~v~~~L~~~~L~----~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~  109 (203)
                      ++.++++.+++.    +..++++++||||||||++|||+|+.+|+++||||||+|||+.++..+++.|+++.+ +.|+|+
T Consensus       131 ~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii  209 (259)
T PRK14274        131 IVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVI  209 (259)
T ss_pred             HHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEE
Confidence            456678888885    346889999999999999999999999999999999999999999999999999864 678888


Q ss_pred             EecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         110 TIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       110 ~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                      +||+++                                           .+.++||++++|++|+++..|+++++.
T Consensus       210 vtH~~~-------------------------------------------~~~~~~d~i~~l~~G~i~~~g~~~~~~  242 (259)
T PRK14274        210 VTHNMQ-------------------------------------------QAARVSDQTAFFYMGELVECNDTNKMF  242 (259)
T ss_pred             EEcCHH-------------------------------------------HHHHhCCEEEEEECCEEEEECCHHHHh
Confidence            888864                                           367899999999999999999988764

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=99.92  E-value=1.5e-24  Score=177.03  Aligned_cols=103  Identities=32%  Similarity=0.565  Sum_probs=92.1

Q ss_pred             HHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEec
Q psy8397          34 LVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIH  112 (203)
Q Consensus        34 ~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH  112 (203)
                      .+.++++.+|+.+..++++.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.|++++++ |.|+|++||
T Consensus        77 ~~~q~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh  156 (180)
T cd03214          77 YVPQALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLH  156 (180)
T ss_pred             HHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence            3445899999998889999999999999999999999999999999999999999999999999999765 778888888


Q ss_pred             CCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeC
Q psy8397         113 QPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKG  179 (203)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g  179 (203)
                      +++                                           .+.++||+++++.+|++++.|
T Consensus       157 ~~~-------------------------------------------~~~~~~d~~~~l~~g~i~~~~  180 (180)
T cd03214         157 DLN-------------------------------------------LAARYADRVILLKDGRIVAQG  180 (180)
T ss_pred             CHH-------------------------------------------HHHHhCCEEEEEECCEEEecC
Confidence            754                                           366899999999999987654

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.92  E-value=6.4e-25  Score=188.99  Aligned_cols=125  Identities=23%  Similarity=0.392  Sum_probs=113.8

Q ss_pred             ccCCCCHhHHHh------------HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Q psy8397          19 YSHRISVDDILD------------TIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLD   86 (203)
Q Consensus        19 ~~~~~~~~~~~~------------~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD   86 (203)
                      +++.+||.|-+.            .++++..||+.+++.....+++.+||.|++|++.+..+++|+|++++||||+||||
T Consensus        83 Ly~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLD  162 (300)
T COG4152          83 LYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLD  162 (300)
T ss_pred             cCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCC
Confidence            567788888543            46678999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCE
Q psy8397          87 SNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDH  166 (203)
Q Consensus        87 ~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~  166 (203)
                      |.+.+.+.+.+.+++..|.|||++||.|+                                           .+.++||+
T Consensus       163 PVN~elLk~~I~~lk~~GatIifSsH~Me-------------------------------------------~vEeLCD~  199 (300)
T COG4152         163 PVNVELLKDAIFELKEEGATIIFSSHRME-------------------------------------------HVEELCDR  199 (300)
T ss_pred             hhhHHHHHHHHHHHHhcCCEEEEecchHH-------------------------------------------HHHHHhhh
Confidence            99999999999999988888888888875                                           47899999


Q ss_pred             EEEEeCCeEEeeCCcccchh
Q psy8397         167 LYVIAEGHCVYKGSSANTIP  186 (203)
Q Consensus       167 v~vl~~G~i~~~g~~~~~~~  186 (203)
                      +++|++|+.|..|+..++.+
T Consensus       200 llmL~kG~~V~~G~v~~ir~  219 (300)
T COG4152         200 LLMLKKGQTVLYGTVEDIRR  219 (300)
T ss_pred             hheecCCceEEeccHHHHHH
Confidence            99999999999999988765

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.92  E-value=2.5e-24  Score=186.28  Aligned_cols=132  Identities=23%  Similarity=0.213  Sum_probs=106.3

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH-----------HHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHHHhc
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT-----------IGLVDDILDTIGLV----LSKHTLCGRLSGGQKKRLSIALELID   71 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~v~~~L~~~~L~----~~~~~~v~~LSgGqrqrl~iA~aL~~   71 (203)
                      ...+.+|...  ++. .|+.|++..           .+++.++++.+++.    +..++++.+||||||||++|||||+.
T Consensus        95 ~i~~v~q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~  171 (269)
T PRK14259         95 RIGMVFQQPN--PFP-KSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAI  171 (269)
T ss_pred             ceEEEccCCc--cch-hhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhc
Confidence            3456665432  333 488776542           24566778888763    45788999999999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEE
Q psy8397          72 NPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVC  151 (203)
Q Consensus        72 ~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~  151 (203)
                      +|++|||||||+|||+.++..+++.|+++++ +.|||++||+++                                    
T Consensus       172 ~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~~~------------------------------------  214 (269)
T PRK14259        172 EPEVILMDEPCSALDPISTLKIEETMHELKK-NFTIVIVTHNMQ------------------------------------  214 (269)
T ss_pred             CCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH------------------------------------
Confidence            9999999999999999999999999999864 678888888864                                    


Q ss_pred             eecCchhHHHhhcCEEEEEeC-----------CeEEeeCCcccch
Q psy8397         152 TIHQPSATIFEMVDHLYVIAE-----------GHCVYKGSSANTI  185 (203)
Q Consensus       152 ~~h~~~~~i~~~~d~v~vl~~-----------G~i~~~g~~~~~~  185 (203)
                             .+..+||++++|++           |++++.|+++++.
T Consensus       215 -------~~~~~~d~i~~l~~~~~~~~~~g~~g~~~~~~~~~~~~  252 (269)
T PRK14259        215 -------QAVRVSDMTAFFNAEEVEGGSGGKVGYLVEFNETKKIF  252 (269)
T ss_pred             -------HHHHhcCEEEEEeccccccccccccceEEEeCCHHHHH
Confidence                   46789999999996           6789999987764

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.92  E-value=1.5e-24  Score=227.66  Aligned_cols=137  Identities=26%  Similarity=0.412  Sum_probs=117.9

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCC
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP   74 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~   74 (203)
                      ...+|+|..  .+...+|+.|.+..            +++++++++.+||.+.+++++++|||||||||+||+||+.+|+
T Consensus      2013 ~IGy~pQ~~--~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~ 2090 (2272)
T TIGR01257      2013 NMGYCPQFD--AIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPP 2090 (2272)
T ss_pred             hEEEEeccc--cCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence            356778742  34567899997642            2356778999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeec
Q psy8397          75 IMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIH  154 (203)
Q Consensus        75 vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h  154 (203)
                      +|||||||+||||.+++.+++.|++++++|+|||+|||+++                                       
T Consensus      2091 VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~me--------------------------------------- 2131 (2272)
T TIGR01257      2091 LVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSME--------------------------------------- 2131 (2272)
T ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH---------------------------------------
Confidence            99999999999999999999999999877888888888864                                       


Q ss_pred             CchhHHHhhcCEEEEEeCCeEEeeCCcccchhHH
Q psy8397         155 QPSATIFEMVDHLYVIAEGHCVYKGSSANTIPYL  188 (203)
Q Consensus       155 ~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~~~~  188 (203)
                          ++..+|||+++|.+|+++..|+++++...+
T Consensus      2132 ----e~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~~ 2161 (2272)
T TIGR01257      2132 ----ECEALCTRLAIMVKGAFQCLGTIQHLKSKF 2161 (2272)
T ss_pred             ----HHHHhCCEEEEEECCEEEEECCHHHHHHHh
Confidence                467899999999999999999998875433

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.92  E-value=3.8e-24  Score=183.75  Aligned_cols=132  Identities=23%  Similarity=0.251  Sum_probs=108.1

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH-------------HHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHHH
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT-------------IGLVDDILDTIGLV----LSKHTLCGRLSGGQKKRLSIALEL   69 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~v~~~L~~~~L~----~~~~~~v~~LSgGqrqrl~iA~aL   69 (203)
                      +..+.+|...  +++ .|+.|++..             .+++.++++.+++.    +..++++.+||||||||++|||||
T Consensus        89 ~i~~v~q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral  165 (259)
T PRK14260         89 QIGMVFQRPN--PFP-MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARAL  165 (259)
T ss_pred             heEEEecccc--cCC-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHH
Confidence            4566666432  333 788887532             23456778888873    467889999999999999999999


Q ss_pred             hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceE
Q psy8397          70 IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTI  149 (203)
Q Consensus        70 ~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tv  149 (203)
                      +.+|++|||||||+|||+.++..+++.|+++++ ++|||++||+++                                  
T Consensus       166 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~----------------------------------  210 (259)
T PRK14260        166 AIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNMQ----------------------------------  210 (259)
T ss_pred             hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH----------------------------------
Confidence            999999999999999999999999999999864 578888888764                                  


Q ss_pred             EEeecCchhHHHhhcCEEEEEe-----CCeEEeeCCcccch
Q psy8397         150 VCTIHQPSATIFEMVDHLYVIA-----EGHCVYKGSSANTI  185 (203)
Q Consensus       150 i~~~h~~~~~i~~~~d~v~vl~-----~G~i~~~g~~~~~~  185 (203)
                               .+.++||++++|+     +|++++.|+++++.
T Consensus       211 ---------~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~~  242 (259)
T PRK14260        211 ---------QATRVSDFTAFFSTDESRIGQMVEFGVTTQIF  242 (259)
T ss_pred             ---------HHHHhcCeEEEEeccCCCCceEEEeCCHHHHh
Confidence                     4678999999998     59999999988764

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.92  E-value=1.8e-24  Score=186.63  Aligned_cols=132  Identities=23%  Similarity=0.282  Sum_probs=106.0

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH-------------HHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHHH
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT-------------IGLVDDILDTIGLV----LSKHTLCGRLSGGQKKRLSIALEL   69 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~v~~~L~~~~L~----~~~~~~v~~LSgGqrqrl~iA~aL   69 (203)
                      +..+.+|...  ++. .|+.+++..             .+.+.++++.+++.    ...++++++||||||||++|||||
T Consensus       103 ~i~~v~q~~~--~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral  179 (268)
T PRK14248        103 EIGMVFQKPN--PFP-KSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTL  179 (268)
T ss_pred             cEEEEecCCc--cCc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHH
Confidence            4556665432  223 377765431             23456678888874    456889999999999999999999


Q ss_pred             hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceE
Q psy8397          70 IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTI  149 (203)
Q Consensus        70 ~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tv  149 (203)
                      +.+|++|||||||+|||+.++..+++.|+++.+ +.|||++||+++                                  
T Consensus       180 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~----------------------------------  224 (268)
T PRK14248        180 AMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNMQ----------------------------------  224 (268)
T ss_pred             hCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHH----------------------------------
Confidence            999999999999999999999999999999864 578888888853                                  


Q ss_pred             EEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         150 VCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       150 i~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                               .+.++||++++|++|++++.|+++++.
T Consensus       225 ---------~~~~~~d~v~~l~~G~i~~~~~~~~~~  251 (268)
T PRK14248        225 ---------QALRVSDRTAFFLNGDLVEYDQTEQIF  251 (268)
T ss_pred             ---------HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence                     367899999999999999999887654

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=99.92  E-value=2.1e-24  Score=186.47  Aligned_cols=132  Identities=23%  Similarity=0.278  Sum_probs=107.1

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH--------------HHHHHHHHHHcCCcc----cccccCCCCCHHHHHHHHHHHH
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT--------------IGLVDDILDTIGLVL----SKHTLCGRLSGGQKKRLSIALE   68 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~v~~~L~~~~L~~----~~~~~v~~LSgGqrqrl~iA~a   68 (203)
                      ...+.+|...  ++. .|+.|++..              .+++.++++.+|+.+    ..++++.+||||||||++||||
T Consensus       101 ~i~~v~q~~~--~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~lara  177 (267)
T PRK14235        101 RVGMVFQKPN--PFP-KSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARA  177 (267)
T ss_pred             ceEEEecCCC--CCC-CcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHH
Confidence            3456665432  223 377776532              234677899999953    4678899999999999999999


Q ss_pred             HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCce
Q psy8397          69 LIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRT  148 (203)
Q Consensus        69 L~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t  148 (203)
                      |+.+|++|||||||+|||+.++..+++.|+++.+ +.|||++||+++                                 
T Consensus       178 l~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~---------------------------------  223 (267)
T PRK14235        178 IAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQ---------------------------------  223 (267)
T ss_pred             HHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHH---------------------------------
Confidence            9999999999999999999999999999999864 678888888854                                 


Q ss_pred             EEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         149 IVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       149 vi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                                .+..+||++++|++|+++..|+++++.
T Consensus       224 ----------~~~~~~d~v~~l~~G~i~~~g~~~~~~  250 (267)
T PRK14235        224 ----------QAARVSQRTAFFHLGNLVEVGDTEKMF  250 (267)
T ss_pred             ----------HHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence                      367899999999999999999887654

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.92  E-value=2.2e-24  Score=183.99  Aligned_cols=133  Identities=23%  Similarity=0.237  Sum_probs=108.7

Q ss_pred             CceeEEEeeecccccCCCCHhHHHhH-------------HHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHH
Q psy8397           6 HGTIWCWQIISAQYSHRISVDDILDT-------------IGLVDDILDTIGLV----LSKHTLCGRLSGGQKKRLSIALE   68 (203)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~v~~~L~~~~L~----~~~~~~v~~LSgGqrqrl~iA~a   68 (203)
                      ....+.+|...  ++. .|+.+++..             .+++.++++.+++.    +..++++.+||||||||++||++
T Consensus        85 ~~i~~~~q~~~--~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lara  161 (251)
T PRK14270         85 KRVGMVFQKPN--PFP-MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIART  161 (251)
T ss_pred             hheEEEecCCC--cCC-CcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHH
Confidence            34667776532  333 787776532             12456788898874    45788999999999999999999


Q ss_pred             HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCce
Q psy8397          69 LIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRT  148 (203)
Q Consensus        69 L~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t  148 (203)
                      |+.+|++|||||||+|||+.++..+++.|+++.+ +.|||++||+++                                 
T Consensus       162 l~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~---------------------------------  207 (251)
T PRK14270        162 IAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQ---------------------------------  207 (251)
T ss_pred             HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHH---------------------------------
Confidence            9999999999999999999999999999999875 578888888753                                 


Q ss_pred             EEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         149 IVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       149 vi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                                .+.++||++++|++|++++.|+++++.
T Consensus       208 ----------~~~~~~d~v~~l~~G~i~~~~~~~~~~  234 (251)
T PRK14270        208 ----------QASRVSDYTAFFLMGDLIEFNKTEKIF  234 (251)
T ss_pred             ----------HHHHhcCEEEEEECCeEEEeCCHHHHh
Confidence                      367889999999999999999988764

>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.92  E-value=4.9e-25  Score=192.77  Aligned_cols=134  Identities=22%  Similarity=0.366  Sum_probs=116.9

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDE   80 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDE   80 (203)
                      ...|+||  .+++++.+||..++..      ....+++.+.+|++++.++++.+|||||||||+|+|||+..|++|+|||
T Consensus        77 riGYVFQ--DARLFpH~tVrgNL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDE  154 (352)
T COG4148          77 RIGYVFQ--DARLFPHYTVRGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDE  154 (352)
T ss_pred             eeeeEee--ccccccceEEecchhhhhcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecC
Confidence            4578887  4567788999988753      4567889999999999999999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhH
Q psy8397          81 PTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSAT  159 (203)
Q Consensus        81 Pt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~  159 (203)
                      |.+.||..-.++++-.|.+|.++ ..-|+++||-+                                          . +
T Consensus       155 PLaSLD~~RK~EilpylERL~~e~~IPIlYVSHS~------------------------------------------~-E  191 (352)
T COG4148         155 PLASLDLPRKREILPYLERLRDEINIPILYVSHSL------------------------------------------D-E  191 (352)
T ss_pred             chhhcccchhhHHHHHHHHHHHhcCCCEEEEecCH------------------------------------------H-H
Confidence            99999999999999999999864 45555555554                                          3 5


Q ss_pred             HHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         160 IFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       160 i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                      +.+++|++++|.+|++.+.|+.+++.
T Consensus       192 v~RLAd~vV~le~GkV~A~g~~e~v~  217 (352)
T COG4148         192 VLRLADRVVVLENGKVKASGPLEEVW  217 (352)
T ss_pred             HHhhhheEEEecCCeEEecCcHHHHh
Confidence            88999999999999999999998875

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=99.92  E-value=2.7e-24  Score=183.21  Aligned_cols=132  Identities=26%  Similarity=0.289  Sum_probs=106.9

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH-------------HHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHHH
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT-------------IGLVDDILDTIGLV----LSKHTLCGRLSGGQKKRLSIALEL   69 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~v~~~L~~~~L~----~~~~~~v~~LSgGqrqrl~iA~aL   69 (203)
                      ...+.+|...  ++. .|+.+++..             .+++.++++.+++.    ...++++.+||||||||++|||||
T Consensus        85 ~i~~~~q~~~--~~~-~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral  161 (250)
T PRK14240         85 RVGMVFQQPN--PFP-MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARAL  161 (250)
T ss_pred             cEEEEecCCc--cCc-ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHH
Confidence            3556666432  333 677776532             23456677888764    456889999999999999999999


Q ss_pred             hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceE
Q psy8397          70 IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTI  149 (203)
Q Consensus        70 ~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tv  149 (203)
                      +.+|++|+|||||+|||+.++..+++.|+++.+ |.|||++||+++                                  
T Consensus       162 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~----------------------------------  206 (250)
T PRK14240        162 AVEPEVLLMDEPTSALDPISTLKIEELIQELKK-DYTIVIVTHNMQ----------------------------------  206 (250)
T ss_pred             hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEEeCHH----------------------------------
Confidence            999999999999999999999999999999854 788888888863                                  


Q ss_pred             EEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         150 VCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       150 i~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                               .+..+||++++|++|++++.|+++++.
T Consensus       207 ---------~~~~~~d~v~~l~~G~i~~~~~~~~~~  233 (250)
T PRK14240        207 ---------QASRISDKTAFFLNGEIVEFGDTVDLF  233 (250)
T ss_pred             ---------HHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence                     367889999999999999999887654

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=99.91  E-value=5.4e-24  Score=175.86  Aligned_cols=107  Identities=27%  Similarity=0.492  Sum_probs=91.3

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCC
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP   74 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~   74 (203)
                      +..+++|..  .++...|+.|++..            .+++.++++.+|+.+..++++.+||||||||++||+||+.+|+
T Consensus        77 ~i~~~~q~~--~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~  154 (206)
T TIGR03608        77 KLGYLFQNF--ALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPP  154 (206)
T ss_pred             CeeEEecch--hhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence            566677643  34456888876542            3467789999999989999999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q psy8397          75 IMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPS  115 (203)
Q Consensus        75 vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~  115 (203)
                      +|||||||+|||+.++..+++.|+++.++|.|+|++||+++
T Consensus       155 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~  195 (206)
T TIGR03608       155 LILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE  195 (206)
T ss_pred             EEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence            99999999999999999999999999866888888888863

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.91  E-value=5.4e-24  Score=186.07  Aligned_cols=132  Identities=23%  Similarity=0.258  Sum_probs=106.0

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH-----------HHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHHHhc
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT-----------IGLVDDILDTIGLV----LSKHTLCGRLSGGQKKRLSIALELID   71 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~v~~~L~~~~L~----~~~~~~v~~LSgGqrqrl~iA~aL~~   71 (203)
                      ...+.+|...  +++ .|+.|++..           .+++.++++.+|+.    +..++++.+||||||||++|||||+.
T Consensus       121 ~i~~v~q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~  197 (285)
T PRK14254        121 RIGMVFQKPN--PFP-KSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAP  197 (285)
T ss_pred             cEEEEecCCc--cCc-CCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHc
Confidence            4556665432  333 378776532           34577889999884    45788999999999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEE
Q psy8397          72 NPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVC  151 (203)
Q Consensus        72 ~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~  151 (203)
                      +|++|||||||+|||+.++..+++.|++++++ .|||++||+++                                    
T Consensus       198 ~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~-~tiii~tH~~~------------------------------------  240 (285)
T PRK14254        198 DPEVILMDEPASALDPVATSKIEDLIEELAEE-YTVVIVTHNMQ------------------------------------  240 (285)
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcC-CEEEEEeCCHH------------------------------------
Confidence            99999999999999999999999999999753 68888888753                                    


Q ss_pred             eecCchhHHHhhcCEEE-EEeCCeEEeeCCcccch
Q psy8397         152 TIHQPSATIFEMVDHLY-VIAEGHCVYKGSSANTI  185 (203)
Q Consensus       152 ~~h~~~~~i~~~~d~v~-vl~~G~i~~~g~~~~~~  185 (203)
                             .+..+||+++ ++++|+++..|+++++.
T Consensus       241 -------~i~~~~dri~v~l~~G~i~~~g~~~~~~  268 (285)
T PRK14254        241 -------QAARISDKTAVFLTGGELVEFDDTDKIF  268 (285)
T ss_pred             -------HHHhhcCEEEEEeeCCEEEEeCCHHHHH
Confidence                   3678899975 67999999999877653

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.91  E-value=6.3e-24  Score=181.10  Aligned_cols=132  Identities=24%  Similarity=0.237  Sum_probs=105.2

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH-------------HHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHHH
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT-------------IGLVDDILDTIGLV----LSKHTLCGRLSGGQKKRLSIALEL   69 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~v~~~L~~~~L~----~~~~~~v~~LSgGqrqrl~iA~aL   69 (203)
                      ...+++|...  ++. .|+.+++..             .+++.+.++.+++.    +..++++++||||||||++||++|
T Consensus        87 ~i~~~~q~~~--~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral  163 (252)
T PRK14255         87 QVGMVFQQPN--PFP-FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVL  163 (252)
T ss_pred             eEEEEECCCc--cCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHH
Confidence            4566666432  333 577776532             12345567777763    456889999999999999999999


Q ss_pred             hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceE
Q psy8397          70 IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTI  149 (203)
Q Consensus        70 ~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tv  149 (203)
                      +.+|++|||||||+|||+.++..+.+.|+++.+ +.|||++||+++                                  
T Consensus       164 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~----------------------------------  208 (252)
T PRK14255        164 AVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSMH----------------------------------  208 (252)
T ss_pred             hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCHH----------------------------------
Confidence            999999999999999999999999999999865 478888888753                                  


Q ss_pred             EEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         150 VCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       150 i~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                               .+..+||++++|++|+++..|++.++.
T Consensus       209 ---------~~~~~~d~i~~l~~G~i~~~~~~~~~~  235 (252)
T PRK14255        209 ---------QASRISDKTAFFLTGNLIEFADTKQMF  235 (252)
T ss_pred             ---------HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence                     367899999999999999999887654

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.91  E-value=4.3e-24  Score=185.21  Aligned_cols=125  Identities=16%  Similarity=0.253  Sum_probs=106.5

Q ss_pred             ccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Q psy8397          19 YSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLD   86 (203)
Q Consensus        19 ~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD   86 (203)
                      +...+|+.+++..            .+.+..+++.+++.+..++++++|||||+||++||+||+.+|++|||||||+|||
T Consensus        96 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD  175 (264)
T PRK13546         96 LSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGD  175 (264)
T ss_pred             CCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCC
Confidence            3445677776531            2234567888899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCE
Q psy8397          87 SNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDH  166 (203)
Q Consensus        87 ~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~  166 (203)
                      +.++..+++.|.++.+.|.|||++||+++                                           .+..+||+
T Consensus       176 ~~~~~~l~~~L~~~~~~g~tiIiisH~~~-------------------------------------------~i~~~~d~  212 (264)
T PRK13546        176 QTFAQKCLDKIYEFKEQNKTIFFVSHNLG-------------------------------------------QVRQFCTK  212 (264)
T ss_pred             HHHHHHHHHHHHHHHHCCCEEEEEcCCHH-------------------------------------------HHHHHcCE
Confidence            99999999999999867888888888853                                           36788999


Q ss_pred             EEEEeCCeEEeeCCcccchh
Q psy8397         167 LYVIAEGHCVYKGSSANTIP  186 (203)
Q Consensus       167 v~vl~~G~i~~~g~~~~~~~  186 (203)
                      +++|++|+++..|+++++..
T Consensus       213 i~~l~~G~i~~~g~~~~~~~  232 (264)
T PRK13546        213 IAWIEGGKLKDYGELDDVLP  232 (264)
T ss_pred             EEEEECCEEEEeCCHHHHHH
Confidence            99999999999999887653

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.91  E-value=8.2e-24  Score=182.52  Aligned_cols=133  Identities=24%  Similarity=0.252  Sum_probs=108.8

Q ss_pred             CceeEEEeeecccccCCCCHhHHHhH-----------HHHHHHHHHHcCCcc----cccccCCCCCHHHHHHHHHHHHHh
Q psy8397           6 HGTIWCWQIISAQYSHRISVDDILDT-----------IGLVDDILDTIGLVL----SKHTLCGRLSGGQKKRLSIALELI   70 (203)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~v~~~L~~~~L~~----~~~~~v~~LSgGqrqrl~iA~aL~   70 (203)
                      +...+.+|...  ++ .+|+.|++..           ..++.++++.+++..    ..++++.+|||||+||++|||||+
T Consensus        89 ~~i~~v~q~~~--~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~  165 (261)
T PRK14263         89 RYIGMVFQQPN--PF-SMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIA  165 (261)
T ss_pred             hceEEEecCCc--cc-cccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHH
Confidence            34566666432  33 4888876642           246788899999853    346788899999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEE
Q psy8397          71 DNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIV  150 (203)
Q Consensus        71 ~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi  150 (203)
                      .+|++|||||||+|||+.++..+++.|+++. ++.|+|++||+++                                   
T Consensus       166 ~~p~llllDEPtsgLD~~~~~~l~~~l~~~~-~~~tii~isH~~~-----------------------------------  209 (261)
T PRK14263        166 TEPEVLLLDEPCSALDPIATRRVEELMVELK-KDYTIALVTHNMQ-----------------------------------  209 (261)
T ss_pred             cCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-----------------------------------
Confidence            9999999999999999999999999999986 4678888888864                                   


Q ss_pred             EeecCchhHHHhhcCEEEEEe--------CCeEEeeCCcccch
Q psy8397         151 CTIHQPSATIFEMVDHLYVIA--------EGHCVYKGSSANTI  185 (203)
Q Consensus       151 ~~~h~~~~~i~~~~d~v~vl~--------~G~i~~~g~~~~~~  185 (203)
                              .+..+||++++|+        +|++++.|+++++.
T Consensus       210 --------~i~~~~d~v~~l~~~~~~~~~~G~i~~~g~~~~~~  244 (261)
T PRK14263        210 --------QAIRVADTTAFFSVDISQGTRTGYLVEMGPTAQIF  244 (261)
T ss_pred             --------HHHHhCCEEEEEecccccccCCceEEEeCCHHHHH
Confidence                    3678999999996        89999999988764

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.91  E-value=3.4e-24  Score=199.18  Aligned_cols=110  Identities=23%  Similarity=0.394  Sum_probs=98.0

Q ss_pred             HHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEE
Q psy8397          32 IGLVDDILDTIGLV-LSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCT  110 (203)
Q Consensus        32 ~~~v~~~L~~~~L~-~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~  110 (203)
                      .+++.++++.+++. +..++++++|||||||||+||++|+.+|++|||||||+|||+.++..+++.|+++.++|.|||++
T Consensus       368 ~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~v  447 (491)
T PRK10982        368 KSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIII  447 (491)
T ss_pred             HHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEE
Confidence            34577889999995 56899999999999999999999999999999999999999999999999999998778888888


Q ss_pred             ecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccc
Q psy8397         111 IHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANT  184 (203)
Q Consensus       111 tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~  184 (203)
                      ||+++                                           .+..+||++++|.+|+++..+++++.
T Consensus       448 sHd~~-------------------------------------------~~~~~~d~v~~l~~g~i~~~~~~~~~  478 (491)
T PRK10982        448 SSEMP-------------------------------------------ELLGITDRILVMSNGLVAGIVDTKTT  478 (491)
T ss_pred             CCChH-------------------------------------------HHHhhCCEEEEEECCEEEEEEccccC
Confidence            88864                                           46789999999999999988876543

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.91  E-value=7.5e-24  Score=189.20  Aligned_cols=133  Identities=22%  Similarity=0.277  Sum_probs=108.2

Q ss_pred             CceeEEEeeecccccCCCCHhHHHhH---------H----HHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHH
Q psy8397           6 HGTIWCWQIISAQYSHRISVDDILDT---------I----GLVDDILDTIGLV----LSKHTLCGRLSGGQKKRLSIALE   68 (203)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~---------~----~~v~~~L~~~~L~----~~~~~~v~~LSgGqrqrl~iA~a   68 (203)
                      ....+++|...  ++ ..|+.+++..         +    +.+.++++.++|.    ...++++.+||||||||++||||
T Consensus       163 ~~i~~v~q~~~--~~-~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARA  239 (329)
T PRK14257        163 TRIGMVFQKPT--PF-EMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARA  239 (329)
T ss_pred             ccEEEEecCCc--cC-CCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHH
Confidence            45666776433  22 4688777652         1    1246678888773    35688899999999999999999


Q ss_pred             HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCce
Q psy8397          69 LIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRT  148 (203)
Q Consensus        69 L~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t  148 (203)
                      |+.+|+||||||||+|||+.+...+.+.|+++.+ ++|+|++||+++                                 
T Consensus       240 l~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~---------------------------------  285 (329)
T PRK14257        240 IALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSMA---------------------------------  285 (329)
T ss_pred             HHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH---------------------------------
Confidence            9999999999999999999999999999999875 578888888764                                 


Q ss_pred             EEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         149 IVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       149 vi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                                .+.++||+|++|++|+++..|++.++.
T Consensus       286 ----------~i~~~~Driivl~~G~i~e~g~~~~l~  312 (329)
T PRK14257        286 ----------QAQRISDETVFFYQGWIEEAGETKTIF  312 (329)
T ss_pred             ----------HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence                      467889999999999999999999875

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=99.91  E-value=3.5e-24  Score=180.96  Aligned_cols=98  Identities=33%  Similarity=0.520  Sum_probs=86.4

Q ss_pred             CCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhh
Q psy8397          43 GLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMV  122 (203)
Q Consensus        43 ~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~  122 (203)
                      ++....++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++. +|+|||++||+++       
T Consensus       127 ~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~-------  198 (237)
T cd03252         127 GYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDIC-AGRTVIIIAHRLS-------  198 (237)
T ss_pred             cccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-------
Confidence            44555678899999999999999999999999999999999999999999999999986 4788888888864       


Q ss_pred             hccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         123 DHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                                                          .+ ..||+++++++|++++.|+++++.
T Consensus       199 ------------------------------------~~-~~~d~v~~l~~G~i~~~~~~~~~~  224 (237)
T cd03252         199 ------------------------------------TV-KNADRIIVMEKGRIVEQGSHDELL  224 (237)
T ss_pred             ------------------------------------HH-HhCCEEEEEECCEEEEEcCHHHHH
Confidence                                                24 469999999999999999887764

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=99.91  E-value=7.9e-24  Score=177.37  Aligned_cols=124  Identities=27%  Similarity=0.427  Sum_probs=103.1

Q ss_pred             CceeEEEeeecccccCCCCHhHHHhH-------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcC
Q psy8397           6 HGTIWCWQIISAQYSHRISVDDILDT-------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDN   72 (203)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~   72 (203)
                      .+..+.+|...  ++..+|+.+++..             .+++.++++.+|+.+..++++.+||||||||++|||+|+.+
T Consensus        82 ~~i~~~~q~~~--~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~  159 (220)
T TIGR02982        82 RNIGYIFQAHN--LLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHR  159 (220)
T ss_pred             hheEEEcCChh--hcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcC
Confidence            45667776532  3455777765431             23578899999999889999999999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEE
Q psy8397          73 PPIMFLDEPTTGLDSNSTNQCVAMLKALAR-GGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVC  151 (203)
Q Consensus        73 P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~-~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~  151 (203)
                      |++++|||||+|||+.++..+++.|+++.+ .|+|||++||+++                                    
T Consensus       160 p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~------------------------------------  203 (220)
T TIGR02982       160 PKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR------------------------------------  203 (220)
T ss_pred             CCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH------------------------------------
Confidence            999999999999999999999999999875 3778888777752                                    


Q ss_pred             eecCchhHHHhhcCEEEEEeCCeE
Q psy8397         152 TIHQPSATIFEMVDHLYVIAEGHC  175 (203)
Q Consensus       152 ~~h~~~~~i~~~~d~v~vl~~G~i  175 (203)
                              ..++||++++|.+|++
T Consensus       204 --------~~~~~d~v~~l~~g~~  219 (220)
T TIGR02982       204 --------ILDVADRIVHMEDGKL  219 (220)
T ss_pred             --------HHhhCCEEEEEECCEE
Confidence                    3478999999999986

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.91  E-value=5.1e-24  Score=175.74  Aligned_cols=125  Identities=24%  Similarity=0.391  Sum_probs=108.1

Q ss_pred             ceeEEEeeecccccCCCCHhHHHh------------HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCC
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILD------------TIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP   74 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~   74 (203)
                      ...++||.|.  +-+.+|..|+..            .+..+.++|+.+||.+..+.++++|||||+|||+||||++..|+
T Consensus        89 ~vGfVFQSF~--Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~  166 (228)
T COG4181          89 HVGFVFQSFH--LIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPD  166 (228)
T ss_pred             ceeEEEEeee--ccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCC
Confidence            3567787655  457788877653            35568899999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEee
Q psy8397          75 IMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTI  153 (203)
Q Consensus        75 vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~  153 (203)
                      +||-||||.+||..+..++.+.+-.++++ |.|.|++|||+                                       
T Consensus       167 vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~---------------------------------------  207 (228)
T COG4181         167 VLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDP---------------------------------------  207 (228)
T ss_pred             EEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCH---------------------------------------
Confidence            99999999999999999999999999875 77777777775                                       


Q ss_pred             cCchhHHHhhcCEEEEEeCCeEEe
Q psy8397         154 HQPSATIFEMVDHLYVIAEGHCVY  177 (203)
Q Consensus       154 h~~~~~i~~~~d~v~vl~~G~i~~  177 (203)
                           .+...|+|.+.|..|+++.
T Consensus       208 -----~LA~Rc~R~~r~~~G~l~~  226 (228)
T COG4181         208 -----QLAARCDRQLRLRSGRLVE  226 (228)
T ss_pred             -----HHHHhhhheeeeecceecc
Confidence                 2567899999999999875

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.91  E-value=8.3e-24  Score=183.66  Aligned_cols=132  Identities=23%  Similarity=0.240  Sum_probs=105.4

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH-----------HHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHHHhc
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT-----------IGLVDDILDTIGLV----LSKHTLCGRLSGGQKKRLSIALELID   71 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~v~~~L~~~~L~----~~~~~~v~~LSgGqrqrl~iA~aL~~   71 (203)
                      +..+.+|...  ++. .|+.+++..           .+.+.++++.+++.    +..++++.+||||||||++|||||+.
T Consensus       102 ~i~~v~q~~~--l~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~  178 (274)
T PRK14265        102 QVGMVFQRPN--PFP-KSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAM  178 (274)
T ss_pred             cEEEEccCCc--ccc-ccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhh
Confidence            3445555432  233 377776532           22345667777763    45788999999999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEE
Q psy8397          72 NPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVC  151 (203)
Q Consensus        72 ~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~  151 (203)
                      +|++|||||||+|||+.++..+++.|+++.+ +.|||++||+++                                    
T Consensus       179 ~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~------------------------------------  221 (274)
T PRK14265        179 KPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNMQ------------------------------------  221 (274)
T ss_pred             CCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH------------------------------------
Confidence            9999999999999999999999999999864 678888888864                                    


Q ss_pred             eecCchhHHHhhcCEEEEEe---------CCeEEeeCCcccch
Q psy8397         152 TIHQPSATIFEMVDHLYVIA---------EGHCVYKGSSANTI  185 (203)
Q Consensus       152 ~~h~~~~~i~~~~d~v~vl~---------~G~i~~~g~~~~~~  185 (203)
                             .+..+||++++|+         +|++++.|+++++.
T Consensus       222 -------~~~~~~d~i~~l~~~~~~~~~~~G~~~~~g~~~~~~  257 (274)
T PRK14265        222 -------QASRVADWTAFFNTEIDEYGKRRGKLVEFSPTEQMF  257 (274)
T ss_pred             -------HHHHhCCEEEEEecccccccccCceEEEeCCHHHHH
Confidence                   4678999999997         89999999998764

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.91  E-value=5.5e-24  Score=181.59  Aligned_cols=133  Identities=25%  Similarity=0.240  Sum_probs=106.9

Q ss_pred             CceeEEEeeecccccCCCCHhHHHhH-------------HHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHH
Q psy8397           6 HGTIWCWQIISAQYSHRISVDDILDT-------------IGLVDDILDTIGLV----LSKHTLCGRLSGGQKKRLSIALE   68 (203)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~v~~~L~~~~L~----~~~~~~v~~LSgGqrqrl~iA~a   68 (203)
                      ....+.+|...  +++ .|+.|++..             .+.+.++++.+++.    +..++++.+||||||||++||||
T Consensus        85 ~~i~~v~q~~~--~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~lara  161 (251)
T PRK14249         85 KRVGMVFQQPN--PFP-KSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARV  161 (251)
T ss_pred             ceEEEEecCCc--cCc-CcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHH
Confidence            34666666533  233 377776532             12355567777764    45789999999999999999999


Q ss_pred             HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCce
Q psy8397          69 LIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRT  148 (203)
Q Consensus        69 L~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t  148 (203)
                      |+.+|++|||||||+|||+.++..+++.|+++. +|.|||++||+++                                 
T Consensus       162 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~~---------------------------------  207 (251)
T PRK14249        162 LAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNMQ---------------------------------  207 (251)
T ss_pred             HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH---------------------------------
Confidence            999999999999999999999999999999985 5788888888864                                 


Q ss_pred             EEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         149 IVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       149 vi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                                .+.++||++++|++|++++.|+++++.
T Consensus       208 ----------~~~~~~d~i~~l~~G~i~~~~~~~~~~  234 (251)
T PRK14249        208 ----------QAARASDWTGFLLTGDLVEYGRTGEIF  234 (251)
T ss_pred             ----------HHHhhCCEEEEEeCCeEEEeCCHHHHH
Confidence                      367889999999999999999887653

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.91  E-value=4.6e-24  Score=186.46  Aligned_cols=132  Identities=26%  Similarity=0.269  Sum_probs=106.4

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH-------------HHHHHHHHHHcCC----cccccccCCCCCHHHHHHHHHHHHH
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT-------------IGLVDDILDTIGL----VLSKHTLCGRLSGGQKKRLSIALEL   69 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~v~~~L~~~~L----~~~~~~~v~~LSgGqrqrl~iA~aL   69 (203)
                      +..|.+|...  +++ .|+.|++..             .+++.++++.+|+    .+..++++.+||||||||++|||||
T Consensus       121 ~i~~v~q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL  197 (286)
T PRK14275        121 KIGMVFQKPN--PFP-KSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTL  197 (286)
T ss_pred             cEEEECCCCC--CCc-cCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHH
Confidence            4556665432  333 377776532             2345677888887    3567889999999999999999999


Q ss_pred             hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceE
Q psy8397          70 IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTI  149 (203)
Q Consensus        70 ~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tv  149 (203)
                      +.+|++|||||||+|||+.++..+++.|+++.+ +.|||++||+++                                  
T Consensus       198 ~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~~----------------------------------  242 (286)
T PRK14275        198 AVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNMQ----------------------------------  242 (286)
T ss_pred             hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH----------------------------------
Confidence            999999999999999999999999999999864 578888888754                                  


Q ss_pred             EEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         150 VCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       150 i~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                               .+.++||++++|++|+++..|+++++.
T Consensus       243 ---------~~~~~~d~i~~L~~G~i~~~g~~~~~~  269 (286)
T PRK14275        243 ---------QASRVSDYTMFFYEGVLVEHAPTAQLF  269 (286)
T ss_pred             ---------HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence                     367889999999999999999987664

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.91  E-value=5e-24  Score=200.56  Aligned_cols=125  Identities=18%  Similarity=0.254  Sum_probs=107.9

Q ss_pred             ccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Q psy8397          19 YSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLD   86 (203)
Q Consensus        19 ~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD   86 (203)
                      +...+|+.|++..            .+++.++++.+++.+..++++.+||||||||++|||||+.+|++|||||||+|||
T Consensus        96 l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD  175 (549)
T PRK13545         96 LNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGD  175 (549)
T ss_pred             cCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCC
Confidence            3445677776432            2346678999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCE
Q psy8397          87 SNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDH  166 (203)
Q Consensus        87 ~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~  166 (203)
                      +.++..+++.|++++++|.|||++||+++                                           .+..+||+
T Consensus       176 ~~sr~~LlelL~el~~~G~TIIIVSHdl~-------------------------------------------~i~~l~Dr  212 (549)
T PRK13545        176 QTFTKKCLDKMNEFKEQGKTIFFISHSLS-------------------------------------------QVKSFCTK  212 (549)
T ss_pred             HHHHHHHHHHHHHHHhCCCEEEEEECCHH-------------------------------------------HHHHhCCE
Confidence            99999999999999866888888888853                                           46788999


Q ss_pred             EEEEeCCeEEeeCCcccchh
Q psy8397         167 LYVIAEGHCVYKGSSANTIP  186 (203)
Q Consensus       167 v~vl~~G~i~~~g~~~~~~~  186 (203)
                      +++|.+|++++.|+++++..
T Consensus       213 IivL~~GkIv~~G~~~el~~  232 (549)
T PRK13545        213 ALWLHYGQVKEYGDIKEVVD  232 (549)
T ss_pred             EEEEECCEEEEECCHHHHHh
Confidence            99999999999999887653

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.91  E-value=6.4e-24  Score=180.77  Aligned_cols=131  Identities=23%  Similarity=0.254  Sum_probs=105.4

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH-------------HHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHHH
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT-------------IGLVDDILDTIGLV----LSKHTLCGRLSGGQKKRLSIALEL   69 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~v~~~L~~~~L~----~~~~~~v~~LSgGqrqrl~iA~aL   69 (203)
                      +..+.+|...  ++. .|+.+++..             .+++.++++.+++.    +..++++.+||||||||++|||||
T Consensus        84 ~i~~~~q~~~--~~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral  160 (249)
T PRK14253         84 KVGMVFQKPN--PFP-MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTI  160 (249)
T ss_pred             heeEEecCCC--cCc-ccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHH
Confidence            4556665432  333 677765532             12445667778874    456788999999999999999999


Q ss_pred             hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceE
Q psy8397          70 IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTI  149 (203)
Q Consensus        70 ~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tv  149 (203)
                      +.+|++|||||||+|||+.++..+++.|+++.+ +.|||++||+++                                  
T Consensus       161 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~----------------------------------  205 (249)
T PRK14253        161 AMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSMQ----------------------------------  205 (249)
T ss_pred             HcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCHH----------------------------------
Confidence            999999999999999999999999999999875 478888888753                                  


Q ss_pred             EEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccc
Q psy8397         150 VCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANT  184 (203)
Q Consensus       150 i~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~  184 (203)
                               .+..+||++++|++|+++..|+++++
T Consensus       206 ---------~~~~~~d~i~~l~~G~i~~~g~~~~~  231 (249)
T PRK14253        206 ---------QARRISDRTAFFLMGELVEHDDTQVI  231 (249)
T ss_pred             ---------HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence                     46789999999999999999987765

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=99.91  E-value=1.2e-23  Score=180.70  Aligned_cols=130  Identities=22%  Similarity=0.278  Sum_probs=104.9

Q ss_pred             CCCCHhHHHhH--------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHH
Q psy8397          21 HRISVDDILDT--------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQ   92 (203)
Q Consensus        21 ~~~~~~~~~~~--------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~   92 (203)
                      ...|+.|++..        ...+.++++.+++....++++++||||||||++||+||+.+|+++||||||++||+.++..
T Consensus        74 ~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~  153 (246)
T cd03237          74 YEGTVRDLLSSITKDFYTHPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLM  153 (246)
T ss_pred             CCCCHHHHHHHHhhhccccHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence            45788887642        1236778999999988999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEe
Q psy8397          93 CVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIA  171 (203)
Q Consensus        93 i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~  171 (203)
                      +.+.|+++.++ |+|||++||+++                                           .+..+||++++|+
T Consensus       154 l~~~l~~~~~~~~~tiiivsHd~~-------------------------------------------~~~~~~d~i~~l~  190 (246)
T cd03237         154 ASKVIRRFAENNEKTAFVVEHDII-------------------------------------------MIDYLADRLIVFE  190 (246)
T ss_pred             HHHHHHHHHHhcCCEEEEEeCCHH-------------------------------------------HHHHhCCEEEEEc
Confidence            99999998753 778888888753                                           3677899999997


Q ss_pred             CCeEE--eeCCcccch----hHHHhcCC
Q psy8397         172 EGHCV--YKGSSANTI----PYLQTIGL  193 (203)
Q Consensus       172 ~G~i~--~~g~~~~~~----~~~~~~g~  193 (203)
                      ++..+  ..++|..+.    .+++..++
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~  218 (246)
T cd03237         191 GEPSVNGVANPPQSLRSGMNRFLKNLDI  218 (246)
T ss_pred             CCCeeEEEeCCchHHHHHHHHHHHHCCC
Confidence            65433  445555533    46666665

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=99.91  E-value=6.5e-24  Score=183.82  Aligned_cols=133  Identities=26%  Similarity=0.235  Sum_probs=107.7

Q ss_pred             CceeEEEeeecccccCCCCHhHHHhH-------------HHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHH
Q psy8397           6 HGTIWCWQIISAQYSHRISVDDILDT-------------IGLVDDILDTIGLV----LSKHTLCGRLSGGQKKRLSIALE   68 (203)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~v~~~L~~~~L~----~~~~~~v~~LSgGqrqrl~iA~a   68 (203)
                      ....+.+|...  ++.. |+.|++..             .+++.++++.+++.    ...++++.+||||||||++||||
T Consensus       106 ~~i~~v~q~~~--l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~lara  182 (272)
T PRK14236        106 RRVGMVFQRPN--PFPK-SIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARA  182 (272)
T ss_pred             ccEEEEecCCc--cCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHH
Confidence            34566666432  2333 77776532             23466778888885    35688999999999999999999


Q ss_pred             HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCce
Q psy8397          69 LIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRT  148 (203)
Q Consensus        69 L~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t  148 (203)
                      |+.+|+++||||||+|||+.++..+++.|+++.+ +.|||++||+++                                 
T Consensus       183 l~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~---------------------------------  228 (272)
T PRK14236        183 IAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQ---------------------------------  228 (272)
T ss_pred             HHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHH---------------------------------
Confidence            9999999999999999999999999999999975 678888888864                                 


Q ss_pred             EEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         149 IVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       149 vi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                                .+.++||++++|++|+++..|+++++.
T Consensus       229 ----------~~~~~~d~i~~l~~G~i~~~g~~~~~~  255 (272)
T PRK14236        229 ----------QAARVSDYTAFMYMGKLVEYGDTDTLF  255 (272)
T ss_pred             ----------HHHhhCCEEEEEECCEEEecCCHHHHh
Confidence                      367899999999999999999887654

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.91  E-value=1.9e-23  Score=179.95  Aligned_cols=133  Identities=26%  Similarity=0.353  Sum_probs=108.6

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH-------------HHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHHH
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT-------------IGLVDDILDTIGLV----LSKHTLCGRLSGGQKKRLSIALEL   69 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~v~~~L~~~~L~----~~~~~~v~~LSgGqrqrl~iA~aL   69 (203)
                      ...|.+|..  .++..+|+.+++..             .+++.++++.+++.    +..++++..||||||||++|||||
T Consensus        91 ~i~~~~q~~--~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral  168 (257)
T PRK14246         91 EVGMVFQQP--NPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARAL  168 (257)
T ss_pred             ceEEEccCC--ccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHH
Confidence            345666532  34455788776531             13467788889986    356889999999999999999999


Q ss_pred             hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceE
Q psy8397          70 IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTI  149 (203)
Q Consensus        70 ~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tv  149 (203)
                      +.+|++++|||||+|||+.+++.+.+.|.++.+ +.|||++||++.                                  
T Consensus       169 ~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~~----------------------------------  213 (257)
T PRK14246        169 ALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNPQ----------------------------------  213 (257)
T ss_pred             HcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCHH----------------------------------
Confidence            999999999999999999999999999999864 578888888753                                  


Q ss_pred             EEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         150 VCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       150 i~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                               .+...||++++|++|+++..|+++++.
T Consensus       214 ---------~~~~~~d~v~~l~~g~i~~~g~~~~~~  240 (257)
T PRK14246        214 ---------QVARVADYVAFLYNGELVEWGSSNEIF  240 (257)
T ss_pred             ---------HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence                     367899999999999999999887664

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=99.91  E-value=5.5e-24  Score=185.85  Aligned_cols=132  Identities=20%  Similarity=0.207  Sum_probs=109.3

Q ss_pred             ceeEEEeeecccccCCCCHhHHHh-----HHHHHHHHHHHcCCcccccccCCC-----------CCHHHHHHHHHHHHHh
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILD-----TIGLVDDILDTIGLVLSKHTLCGR-----------LSGGQKKRLSIALELI   70 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~v~~~L~~~~L~~~~~~~v~~-----------LSgGqrqrl~iA~aL~   70 (203)
                      ...+++|...  +++ .|+.+++.     ..+++.++++.+||....++++..           ||||||||++|||||+
T Consensus        78 ~i~~v~q~~~--lf~-~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall  154 (275)
T cd03289          78 AFGVIPQKVF--IFS-GTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVL  154 (275)
T ss_pred             hEEEECCCcc--cch-hhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHh
Confidence            4566676433  333 47877764     245678889999998888888876           9999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEE
Q psy8397          71 DNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIV  150 (203)
Q Consensus        71 ~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi  150 (203)
                      .+|++|+|||||++||+.++..+.+.|+++. +++|||++||+++                                   
T Consensus       155 ~~p~illlDEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~~-----------------------------------  198 (275)
T cd03289         155 SKAKILLLDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRIE-----------------------------------  198 (275)
T ss_pred             cCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCHH-----------------------------------
Confidence            9999999999999999999999999999874 4788888888863                                   


Q ss_pred             EeecCchhHHHhhcCEEEEEeCCeEEeeCCcccchh
Q psy8397         151 CTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTIP  186 (203)
Q Consensus       151 ~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~~  186 (203)
                              .+. .||++++|++|++++.|+|+++..
T Consensus       199 --------~i~-~~dri~vl~~G~i~~~g~~~~l~~  225 (275)
T cd03289         199 --------AML-ECQRFLVIEENKVRQYDSIQKLLN  225 (275)
T ss_pred             --------HHH-hCCEEEEecCCeEeecCCHHHHhh
Confidence                    244 499999999999999999988763

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=99.91  E-value=6.4e-24  Score=178.79  Aligned_cols=105  Identities=32%  Similarity=0.520  Sum_probs=90.5

Q ss_pred             HHHHHHc--CCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecC
Q psy8397          36 DDILDTI--GLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQ  113 (203)
Q Consensus        36 ~~~L~~~--~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~  113 (203)
                      .++++.+  ++....++++.+||||||||++||+||+.+|+++||||||+|||+.++..+.+.|+++.+ |.|||++||+
T Consensus       118 ~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~  196 (234)
T cd03251         118 HEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMK-NRTTFVIAHR  196 (234)
T ss_pred             HHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEecC
Confidence            3445555  666677888999999999999999999999999999999999999999999999999864 7888888888


Q ss_pred             CCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         114 PSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                      ++                                           .+.. ||++++|++|+++..|+++++.
T Consensus       197 ~~-------------------------------------------~~~~-~d~v~~l~~G~i~~~~~~~~~~  224 (234)
T cd03251         197 LS-------------------------------------------TIEN-ADRIVVLEDGKIVERGTHEELL  224 (234)
T ss_pred             HH-------------------------------------------HHhh-CCEEEEecCCeEeeeCCHHHHH
Confidence            64                                           2444 9999999999999999887664

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=99.91  E-value=7.7e-24  Score=178.95  Aligned_cols=99  Identities=34%  Similarity=0.479  Sum_probs=87.6

Q ss_pred             CCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhh
Q psy8397          43 GLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMV  122 (203)
Q Consensus        43 ~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~  122 (203)
                      ++....++++.+||||||||++||+||+.+|++|||||||+|||+.++..+++.|+++. +|+|||++||+++       
T Consensus       128 ~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~-------  199 (238)
T cd03249         128 GYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLS-------  199 (238)
T ss_pred             ccceeeccCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-------
Confidence            44455677889999999999999999999999999999999999999999999999987 7889999999864       


Q ss_pred             hccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccchh
Q psy8397         123 DHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTIP  186 (203)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~~  186 (203)
                                                          .+. .||++++|++|++++.|+++++..
T Consensus       200 ------------------------------------~~~-~~d~v~~l~~G~i~~~~~~~~~~~  226 (238)
T cd03249         200 ------------------------------------TIR-NADLIAVLQNGQVVEQGTHDELMA  226 (238)
T ss_pred             ------------------------------------HHh-hCCEEEEEECCEEEEeCCHHHHhh
Confidence                                                244 799999999999999998776654

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=99.91  E-value=8.3e-24  Score=176.59  Aligned_cols=125  Identities=26%  Similarity=0.409  Sum_probs=99.7

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH------HHHHHHHHHHcCCcccccccC-----------CCCCHHHHHHHHHHHHH
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT------IGLVDDILDTIGLVLSKHTLC-----------GRLSGGQKKRLSIALEL   69 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~v~~~L~~~~L~~~~~~~v-----------~~LSgGqrqrl~iA~aL   69 (203)
                      ...|.+|...  ++. .|+.|++..      .+++.++++.+++.+..++.+           .+||||||||++||+||
T Consensus        79 ~i~~~~q~~~--~~~-~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al  155 (220)
T cd03245          79 NIGYVPQDVT--LFY-GTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARAL  155 (220)
T ss_pred             hEEEeCCCCc--ccc-chHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHH
Confidence            3556666432  333 588776532      345678888899887766644           69999999999999999


Q ss_pred             hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceE
Q psy8397          70 IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTI  149 (203)
Q Consensus        70 ~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tv  149 (203)
                      +.+|++|||||||+|||+.++..+++.|+++.++ .|||++||+++                                  
T Consensus       156 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~----------------------------------  200 (220)
T cd03245         156 LNDPPILLLDEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHRPS----------------------------------  200 (220)
T ss_pred             hcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCC-CEEEEEeCCHH----------------------------------
Confidence            9999999999999999999999999999998753 77777777753                                  


Q ss_pred             EEeecCchhHHHhhcCEEEEEeCCeEEeeC
Q psy8397         150 VCTIHQPSATIFEMVDHLYVIAEGHCVYKG  179 (203)
Q Consensus       150 i~~~h~~~~~i~~~~d~v~vl~~G~i~~~g  179 (203)
                               .+ ++||+++++++|++++.|
T Consensus       201 ---------~~-~~~d~v~~l~~g~i~~~~  220 (220)
T cd03245         201 ---------LL-DLVDRIIVMDSGRIVADG  220 (220)
T ss_pred             ---------HH-HhCCEEEEEeCCeEeecC
Confidence                     23 689999999999987654

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.91  E-value=1.1e-23  Score=191.58  Aligned_cols=137  Identities=25%  Similarity=0.387  Sum_probs=117.1

Q ss_pred             CceeEEEeeecccccCCCCHhHHH-------------hHHHHHHHHHHHcCCcc---cccccCCCCCHHHHHHHHHHHHH
Q psy8397           6 HGTIWCWQIISAQYSHRISVDDIL-------------DTIGLVDDILDTIGLVL---SKHTLCGRLSGGQKKRLSIALEL   69 (203)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~v~~~L~~~~L~~---~~~~~v~~LSgGqrqrl~iA~aL   69 (203)
                      +-....||.++..+++-.|+..-+             ..++++-++|+.+|+.+   ..+.++.+|||||||||+||.||
T Consensus        93 ~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMAL  172 (534)
T COG4172          93 NKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMAL  172 (534)
T ss_pred             cceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHH
Confidence            445667888887777766665522             23668889999999964   46889999999999999999999


Q ss_pred             hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCce
Q psy8397          70 IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRT  148 (203)
Q Consensus        70 ~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t  148 (203)
                      +.+|++||-||||++||...+.+++++|++|+++ |.+++++|||+.                                 
T Consensus       173 an~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~---------------------------------  219 (534)
T COG4172         173 ANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLG---------------------------------  219 (534)
T ss_pred             cCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHH---------------------------------
Confidence            9999999999999999999999999999999875 777777777763                                 


Q ss_pred             EEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         149 IVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       149 vi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                                .+.+++|||+||.+|+++..|+.+.++
T Consensus       220 ----------iVr~~ADrV~VM~~G~ivE~~~t~~lF  246 (534)
T COG4172         220 ----------IVRKFADRVYVMQHGEIVETGTTETLF  246 (534)
T ss_pred             ----------HHHHhhhhEEEEeccEEeecCcHHHHh
Confidence                      478899999999999999999998887

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=99.91  E-value=1.2e-23  Score=181.74  Aligned_cols=132  Identities=24%  Similarity=0.220  Sum_probs=107.7

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH-------------HHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHHH
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT-------------IGLVDDILDTIGLV----LSKHTLCGRLSGGQKKRLSIALEL   69 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~v~~~L~~~~L~----~~~~~~v~~LSgGqrqrl~iA~aL   69 (203)
                      +..+.+|...  ++. .|+.+++..             .+++.++++.+++.    ...++++.+||||||||++|||||
T Consensus       102 ~i~~v~q~~~--~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral  178 (267)
T PRK14237        102 HIGMVFQRPN--PFA-KSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAI  178 (267)
T ss_pred             ceEEEecCCc--ccc-ccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHH
Confidence            4566666432  223 478776532             23456678888884    457889999999999999999999


Q ss_pred             hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceE
Q psy8397          70 IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTI  149 (203)
Q Consensus        70 ~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tv  149 (203)
                      +.+|++|||||||+|||+.++..+.+.|+++. ++.|||++||+++                                  
T Consensus       179 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiii~tH~~~----------------------------------  223 (267)
T PRK14237        179 AVKPDILLMDEPASALDPISTMQLEETMFELK-KNYTIIIVTHNMQ----------------------------------  223 (267)
T ss_pred             hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCEEEEEecCHH----------------------------------
Confidence            99999999999999999999999999999986 4678888888764                                  


Q ss_pred             EEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         150 VCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       150 i~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                               .+.++||++++|++|++++.|+++++.
T Consensus       224 ---------~~~~~~d~i~~l~~G~i~~~g~~~~~~  250 (267)
T PRK14237        224 ---------QAARASDYTAFFYLGDLIEYDKTRNIF  250 (267)
T ss_pred             ---------HHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence                     367899999999999999999987764

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=99.91  E-value=1.3e-23  Score=172.22  Aligned_cols=109  Identities=30%  Similarity=0.377  Sum_probs=91.8

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCC
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP   74 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~   74 (203)
                      +..+.+|.....++ ..|+.|++..            .+++.++++.+|+.+..++++.+||||||||++|||||+.+|+
T Consensus        69 ~i~~~~q~~~~~~~-~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~  147 (190)
T TIGR01166        69 RVGLVFQDPDDQLF-AADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPD  147 (190)
T ss_pred             hEEEEecChhhccc-cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence            45666765321232 3578776532            2356788999999988999999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCc
Q psy8397          75 IMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSA  116 (203)
Q Consensus        75 vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~  116 (203)
                      ++||||||+|||+.+++.+++.|++++++|.|||++||++++
T Consensus       148 llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~~  189 (190)
T TIGR01166       148 VLLLDEPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVDL  189 (190)
T ss_pred             EEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence            999999999999999999999999998889999999999753

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.91  E-value=1.2e-23  Score=220.91  Aligned_cols=134  Identities=24%  Similarity=0.356  Sum_probs=116.9

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCC
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP   74 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~   74 (203)
                      ...+++|..  .++..+||.|++..            +++++++++.+||.+..++++++|||||||||+||+||+.+|+
T Consensus      1004 ~IG~~pQ~~--~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~Pk 1081 (2272)
T TIGR01257      1004 SLGMCPQHN--ILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAK 1081 (2272)
T ss_pred             cEEEEecCC--cCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence            466788753  34567999997642            2457889999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeec
Q psy8397          75 IMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIH  154 (203)
Q Consensus        75 vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h  154 (203)
                      +|||||||+|||+.+++.+++.|++++ +|+|||++||+++                                       
T Consensus      1082 VLLLDEPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdmd--------------------------------------- 1121 (2272)
T TIGR01257      1082 VVVLDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHMD--------------------------------------- 1121 (2272)
T ss_pred             EEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCHH---------------------------------------
Confidence            999999999999999999999999985 5889999998875                                       


Q ss_pred             CchhHHHhhcCEEEEEeCCeEEeeCCcccchh
Q psy8397         155 QPSATIFEMVDHLYVIAEGHCVYKGSSANTIP  186 (203)
Q Consensus       155 ~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~~  186 (203)
                          ++..+|||+++|++|+++..|++..+.+
T Consensus      1122 ----ea~~laDrI~iL~~GkL~~~Gs~~~Lk~ 1149 (2272)
T TIGR01257      1122 ----EADLLGDRIAIISQGRLYCSGTPLFLKN 1149 (2272)
T ss_pred             ----HHHHhCCEEEEEECCEEEEecCHHHHHH
Confidence                3678999999999999999999887754

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.90  E-value=1.2e-23  Score=197.19  Aligned_cols=131  Identities=18%  Similarity=0.255  Sum_probs=107.8

Q ss_pred             eeEEEeeecccccCCCCHhHHHhH-------HHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy8397           8 TIWCWQIISAQYSHRISVDDILDT-------IGLVDDILDTIGLV-LSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLD   79 (203)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~-------~~~v~~~L~~~~L~-~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLD   79 (203)
                      ..|.+|.....+...+|+.+++..       .+++.++++.+|+. +..++++++||||||||++||++|+.+|++||||
T Consensus       384 i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLD  463 (530)
T PRK15064        384 IGYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMD  463 (530)
T ss_pred             EEEEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEc
Confidence            455665433234456788886532       34678899999994 6789999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhH
Q psy8397          80 EPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSAT  159 (203)
Q Consensus        80 EPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~  159 (203)
                      |||+|||+.++..+++.|+++   +.|||++||+++                                           .
T Consensus       464 EPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~-------------------------------------------~  497 (530)
T PRK15064        464 EPTNHMDMESIESLNMALEKY---EGTLIFVSHDRE-------------------------------------------F  497 (530)
T ss_pred             CCCCCCCHHHHHHHHHHHHHC---CCEEEEEeCCHH-------------------------------------------H
Confidence            999999999999999999876   348888888853                                           4


Q ss_pred             HHhhcCEEEEEeCCeEE-eeCCcccc
Q psy8397         160 IFEMVDHLYVIAEGHCV-YKGSSANT  184 (203)
Q Consensus       160 i~~~~d~v~vl~~G~i~-~~g~~~~~  184 (203)
                      +..+||++++|++|+++ +.|++.++
T Consensus       498 ~~~~~d~i~~l~~g~i~~~~g~~~~~  523 (530)
T PRK15064        498 VSSLATRIIEITPDGVVDFSGTYEEY  523 (530)
T ss_pred             HHHhCCEEEEEECCeEEEcCCCHHHH
Confidence            67889999999999997 88877654

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=99.90  E-value=1.3e-23  Score=181.28  Aligned_cols=132  Identities=23%  Similarity=0.212  Sum_probs=105.3

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH-----------HHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHHHhc
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT-----------IGLVDDILDTIGLV----LSKHTLCGRLSGGQKKRLSIALELID   71 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~v~~~L~~~~L~----~~~~~~v~~LSgGqrqrl~iA~aL~~   71 (203)
                      ...+.+|...  ++. .|+.+++..           .+++.++++.+++.    ...++++.+||||||||++|||||+.
T Consensus        92 ~i~~v~q~~~--~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~  168 (264)
T PRK14243         92 RIGMVFQKPN--PFP-KSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAV  168 (264)
T ss_pred             hEEEEccCCc--ccc-ccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhc
Confidence            3455565432  223 377775432           23455677877774    35688999999999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEE
Q psy8397          72 NPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVC  151 (203)
Q Consensus        72 ~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~  151 (203)
                      +|++|||||||+|||+.++..+++.|+++.+ +.|||++||+++                                    
T Consensus       169 ~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~------------------------------------  211 (264)
T PRK14243        169 QPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNMQ------------------------------------  211 (264)
T ss_pred             CCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH------------------------------------
Confidence            9999999999999999999999999999875 478888888754                                    


Q ss_pred             eecCchhHHHhhcCEEEEEe---------CCeEEeeCCcccch
Q psy8397         152 TIHQPSATIFEMVDHLYVIA---------EGHCVYKGSSANTI  185 (203)
Q Consensus       152 ~~h~~~~~i~~~~d~v~vl~---------~G~i~~~g~~~~~~  185 (203)
                             .+..+||++++|+         +|++++.|+++++.
T Consensus       212 -------~~~~~~d~v~~l~~~~~~~~~~~g~i~~~~~~~~~~  247 (264)
T PRK14243        212 -------QAARVSDMTAFFNVELTEGGGRYGYLVEFDRTEKIF  247 (264)
T ss_pred             -------HHHHhCCEEEEEecccccccccCceEEEeCCHHHHH
Confidence                   4788999999998         89999999988774

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.90  E-value=7.5e-24  Score=184.01  Aligned_cols=113  Identities=29%  Similarity=0.393  Sum_probs=103.0

Q ss_pred             hHHHHHHHHHHHcCCcc-cccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeE
Q psy8397          30 DTIGLVDDILDTIGLVL-SKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTI  107 (203)
Q Consensus        30 ~~~~~v~~~L~~~~L~~-~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tv  107 (203)
                      +..+++.++|+.+|+.. .+++++.+|||||+||++|||||+.+|+++++|||+|+||...+.++.++++.++++ |.|.
T Consensus        84 ~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~  163 (268)
T COG4608          84 ERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTY  163 (268)
T ss_pred             HHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeE
Confidence            35678999999999974 889999999999999999999999999999999999999999999999999999875 7777


Q ss_pred             EEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         108 VCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       108 i~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                      +++|||++                                           .+..+|||+.||..|+|+..|+.++++
T Consensus       164 lFIsHDL~-------------------------------------------vv~~isdri~VMy~G~iVE~g~~~~~~  198 (268)
T COG4608         164 LFISHDLS-------------------------------------------VVRYISDRIAVMYLGKIVEIGPTEEVF  198 (268)
T ss_pred             EEEEEEHH-------------------------------------------hhhhhcccEEEEecCceeEecCHHHHh
Confidence            77777764                                           477899999999999999999998876

>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.90  E-value=2.5e-23  Score=176.22  Aligned_cols=100  Identities=29%  Similarity=0.441  Sum_probs=89.3

Q ss_pred             HHHHHHcCCcc-cccccCCCCCHHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEec
Q psy8397          36 DDILDTIGLVL-SKHTLCGRLSGGQKKRLSIALELIDNP--PIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH  112 (203)
Q Consensus        36 ~~~L~~~~L~~-~~~~~v~~LSgGqrqrl~iA~aL~~~P--~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH  112 (203)
                      .++++.+++.+ ..++++.+||||||||++||++|+.+|  ++|||||||+|||+..+..+++.|++++++|.|+|++||
T Consensus       118 ~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH  197 (226)
T cd03270         118 LGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEH  197 (226)
T ss_pred             HHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEe
Confidence            56889999986 589999999999999999999999998  599999999999999999999999999866778888888


Q ss_pred             CCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEE------eCCeEEeeC
Q psy8397         113 QPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVI------AEGHCVYKG  179 (203)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl------~~G~i~~~g  179 (203)
                      +++                                           .+ .+||++++|      ++|+|+++|
T Consensus       198 ~~~-------------------------------------------~~-~~~d~i~~l~~~~~~~~G~iv~~g  226 (226)
T cd03270         198 DED-------------------------------------------TI-RAADHVIDIGPGAGVHGGEIVAQG  226 (226)
T ss_pred             CHH-------------------------------------------HH-HhCCEEEEeCCCccccCCEEEecC
Confidence            753                                           23 589999999      899999876

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=99.90  E-value=1.1e-23  Score=182.57  Aligned_cols=132  Identities=23%  Similarity=0.247  Sum_probs=104.9

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH-------------HHHHHHHHHHcC----CcccccccCCCCCHHHHHHHHHHHHH
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT-------------IGLVDDILDTIG----LVLSKHTLCGRLSGGQKKRLSIALEL   69 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~v~~~L~~~~----L~~~~~~~v~~LSgGqrqrl~iA~aL   69 (203)
                      ...+.+|...  ++. .|+.+++..             .+.+.++++.++    +.+..++++.+||||||||++|||+|
T Consensus       106 ~i~~v~q~~~--~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL  182 (271)
T PRK14238        106 NVGMVFQKPN--PFP-KSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCL  182 (271)
T ss_pred             hEEEEecCCc--ccc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHH
Confidence            4566666432  333 478776531             122445566664    44557889999999999999999999


Q ss_pred             hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceE
Q psy8397          70 IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTI  149 (203)
Q Consensus        70 ~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tv  149 (203)
                      +.+|++|||||||+|||+.++..+.+.|+++.+ +.|||++||+++                                  
T Consensus       183 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~----------------------------------  227 (271)
T PRK14238        183 AIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNMQ----------------------------------  227 (271)
T ss_pred             HcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHH----------------------------------
Confidence            999999999999999999999999999999875 678888888753                                  


Q ss_pred             EEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         150 VCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       150 i~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                               .+.++||++++|++|+++..|+++++.
T Consensus       228 ---------~i~~~~d~i~~l~~G~i~~~g~~~~~~  254 (271)
T PRK14238        228 ---------QAARISDKTAFFLNGYVNEYDDTDKIF  254 (271)
T ss_pred             ---------HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence                     367899999999999999999887664

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.90  E-value=1.3e-23  Score=179.50  Aligned_cols=132  Identities=22%  Similarity=0.239  Sum_probs=105.9

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH-------------HHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHHH
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT-------------IGLVDDILDTIGLV----LSKHTLCGRLSGGQKKRLSIALEL   69 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~v~~~L~~~~L~----~~~~~~v~~LSgGqrqrl~iA~aL   69 (203)
                      ...+.+|...  ++. .|+.|++..             .+++.++++.+++.    ...++++.+||||||||++|||+|
T Consensus        88 ~i~~~~q~~~--~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral  164 (253)
T PRK14261         88 KIGMVFQRPN--PFP-KSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTL  164 (253)
T ss_pred             eEEEEecCCc--cCc-ccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHH
Confidence            4556666432  333 377776532             22456677888774    346889999999999999999999


Q ss_pred             hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceE
Q psy8397          70 IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTI  149 (203)
Q Consensus        70 ~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tv  149 (203)
                      +.+|+++||||||+|||+.++..+.+.|+++.+ +.|||++||+++                                  
T Consensus       165 ~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~----------------------------------  209 (253)
T PRK14261        165 AVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQ----------------------------------  209 (253)
T ss_pred             hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHH----------------------------------
Confidence            999999999999999999999999999999875 578888888753                                  


Q ss_pred             EEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         150 VCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       150 i~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                               .+.++||++++|++|+++..|+++++.
T Consensus       210 ---------~~~~~~d~v~~l~~G~i~~~g~~~~~~  236 (253)
T PRK14261        210 ---------QAARVSDYTGFMYLGKLIEFDKTTQIF  236 (253)
T ss_pred             ---------HHHhhCCEEEEEECCEEEEcCCHHHHH
Confidence                     367899999999999999999987654

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.90  E-value=2.9e-23  Score=178.76  Aligned_cols=109  Identities=28%  Similarity=0.350  Sum_probs=95.1

Q ss_pred             HHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEE
Q psy8397          33 GLVDDILDTIGLV----LSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIV  108 (203)
Q Consensus        33 ~~v~~~L~~~~L~----~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi  108 (203)
                      +++.++++.+++.    +..++++.+|||||+||++|||+|+.+|+++||||||+|||+.++..+.+.|+++.+ +.|||
T Consensus       136 ~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tii  214 (265)
T PRK14252        136 ERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTIL  214 (265)
T ss_pred             HHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEE
Confidence            4556777888763    456888999999999999999999999999999999999999999999999999875 57888


Q ss_pred             EEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         109 CTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       109 ~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                      ++||+++                                           .+.++||++++|++|+++..|+.+++.
T Consensus       215 ivth~~~-------------------------------------------~~~~~~d~i~~l~~G~i~~~g~~~~~~  248 (265)
T PRK14252        215 IVTHNMQ-------------------------------------------QAARVSDYTAYMYMGELIEFGATDTIF  248 (265)
T ss_pred             EEecCHH-------------------------------------------HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence            8888753                                           367899999999999999999887654

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.90  E-value=1.6e-23  Score=178.45  Aligned_cols=133  Identities=23%  Similarity=0.240  Sum_probs=107.4

Q ss_pred             CceeEEEeeecccccCCCCHhHHHhH-------------HHHHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHH
Q psy8397           6 HGTIWCWQIISAQYSHRISVDDILDT-------------IGLVDDILDTIGLV----LSKHTLCGRLSGGQKKRLSIALE   68 (203)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~v~~~L~~~~L~----~~~~~~v~~LSgGqrqrl~iA~a   68 (203)
                      ....+++|...  ++. .|+.+++..             .+++.++++.+|+.    ...++++.+||||||||++||||
T Consensus        84 ~~i~~~~q~~~--~~~-~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~lara  160 (250)
T PRK14266         84 KKVGMVFQKPN--PFP-KSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIART  160 (250)
T ss_pred             hheEEEecCCc--cCc-chHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHH
Confidence            34666776432  233 367665431             23466778888874    34688899999999999999999


Q ss_pred             HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCce
Q psy8397          69 LIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRT  148 (203)
Q Consensus        69 L~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t  148 (203)
                      |+.+|++|+|||||+|||+.++..+.+.|+++.+ |.|||++||+++                                 
T Consensus       161 l~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiii~sh~~~---------------------------------  206 (250)
T PRK14266        161 IAVSPEVILMDEPCSALDPISTTKIEDLIHKLKE-DYTIVIVTHNMQ---------------------------------  206 (250)
T ss_pred             HHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEECCHH---------------------------------
Confidence            9999999999999999999999999999999864 788888888864                                 


Q ss_pred             EEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         149 IVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       149 vi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                                .+...||+++++++|++++.|+++++.
T Consensus       207 ----------~~~~~~~~i~~l~~G~i~~~g~~~~~~  233 (250)
T PRK14266        207 ----------QATRVSKYTSFFLNGEIIESGLTDQIF  233 (250)
T ss_pred             ----------HHHhhcCEEEEEECCeEEEeCCHHHHH
Confidence                      367889999999999999999987763

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=99.90  E-value=2.1e-23  Score=174.28  Aligned_cols=126  Identities=22%  Similarity=0.202  Sum_probs=99.3

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH-----HHHHHHHHHHcCCcccc-----------cccCCCCCHHHHHHHHHHHHHh
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT-----IGLVDDILDTIGLVLSK-----------HTLCGRLSGGQKKRLSIALELI   70 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~L~~~~L~~~~-----------~~~v~~LSgGqrqrl~iA~aL~   70 (203)
                      ...+.+|...  ++. .|+.|++..     .+++.+.++.+++.+..           +.++..||||||||++|||+|+
T Consensus        79 ~i~~~~q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~  155 (221)
T cd03244          79 RISIIPQDPV--LFS-GTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALL  155 (221)
T ss_pred             hEEEECCCCc--ccc-chHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHh
Confidence            4566666433  333 477776532     34566667777765543           4688999999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEE
Q psy8397          71 DNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIV  150 (203)
Q Consensus        71 ~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi  150 (203)
                      .+|+++||||||+|||+.++..+++.|+++.+ +.|||++||+++                                   
T Consensus       156 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-----------------------------------  199 (221)
T cd03244         156 RKSKILVLDEATASVDPETDALIQKTIREAFK-DCTVLTIAHRLD-----------------------------------  199 (221)
T ss_pred             cCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHH-----------------------------------
Confidence            99999999999999999999999999999864 578888888764                                   


Q ss_pred             EeecCchhHHHhhcCEEEEEeCCeEEeeCC
Q psy8397         151 CTIHQPSATIFEMVDHLYVIAEGHCVYKGS  180 (203)
Q Consensus       151 ~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~  180 (203)
                              .+. .||++++|++|++++.|+
T Consensus       200 --------~~~-~~d~i~~l~~g~~~~~~~  220 (221)
T cd03244         200 --------TII-DSDRILVLDKGRVVEFDS  220 (221)
T ss_pred             --------HHh-hCCEEEEEECCeEEecCC
Confidence                    244 499999999999998875

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.90  E-value=1.8e-23  Score=181.81  Aligned_cols=132  Identities=26%  Similarity=0.329  Sum_probs=106.2

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH-------------HHHHHHHHHHcCCcc----cccccCCCCCHHHHHHHHHHHHH
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT-------------IGLVDDILDTIGLVL----SKHTLCGRLSGGQKKRLSIALEL   69 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~v~~~L~~~~L~~----~~~~~v~~LSgGqrqrl~iA~aL   69 (203)
                      ...|.+|...  +++ .|+.+++..             ..++.++++.+++..    ..++.+.+||||||||++|||+|
T Consensus       102 ~i~~v~q~~~--l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral  178 (276)
T PRK14271        102 RVGMLFQRPN--PFP-MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTL  178 (276)
T ss_pred             heEEeccCCc--cCC-ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHH
Confidence            3455665432  233 677775532             123456788888863    45788999999999999999999


Q ss_pred             hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceE
Q psy8397          70 IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTI  149 (203)
Q Consensus        70 ~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tv  149 (203)
                      +.+|++|||||||+|||+.+++.+.+.|+++.+ +.|||++||+++                                  
T Consensus       179 ~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~----------------------------------  223 (276)
T PRK14271        179 AVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLA----------------------------------  223 (276)
T ss_pred             hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH----------------------------------
Confidence            999999999999999999999999999999875 478888888753                                  


Q ss_pred             EEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         150 VCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       150 i~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                               .+.++||++++|++|+++..|+++++.
T Consensus       224 ---------~~~~~~dri~~l~~G~i~~~g~~~~~~  250 (276)
T PRK14271        224 ---------QAARISDRAALFFDGRLVEEGPTEQLF  250 (276)
T ss_pred             ---------HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence                     467899999999999999999988764

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.90  E-value=2.3e-23  Score=176.31  Aligned_cols=135  Identities=21%  Similarity=0.394  Sum_probs=113.1

Q ss_pred             ccccCCCCHhHHHhH--------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhc------CCCEE
Q psy8397          17 AQYSHRISVDDILDT--------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELID------NPPIM   76 (203)
Q Consensus        17 ~~~~~~~~~~~~~~~--------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~------~P~vL   76 (203)
                      ..+.+++||.|+..+              .+.++++|...++..+..+...+|||||||||.+||+|++      ++++|
T Consensus        84 s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L  163 (259)
T COG4559          84 SSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWL  163 (259)
T ss_pred             cccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCCceE
Confidence            345677888887643              2346788999999999999999999999999999999986      44589


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCc
Q psy8397          77 FLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQP  156 (203)
Q Consensus        77 lLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~  156 (203)
                      ||||||++||+..+...++..++++++|..|+++-||++                                         
T Consensus       164 ~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLN-----------------------------------------  202 (259)
T COG4559         164 FLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLN-----------------------------------------  202 (259)
T ss_pred             EecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccch-----------------------------------------
Confidence            999999999999999999999999977777777777765                                         


Q ss_pred             hhHHHhhcCEEEEEeCCeEEeeCCcccchh--HH-HhcCCC
Q psy8397         157 SATIFEMVDHLYVIAEGHCVYKGSSANTIP--YL-QTIGLH  194 (203)
Q Consensus       157 ~~~i~~~~d~v~vl~~G~i~~~g~~~~~~~--~~-~~~g~~  194 (203)
                        ....+||||++|.+||+++.|+|.++..  -+ .-+|..
T Consensus       203 --LAA~YaDrivll~~Grv~a~g~p~~vlt~Etl~~vyg~~  241 (259)
T COG4559         203 --LAAQYADRIVLLHQGRVIASGSPQDVLTDETLERVYGAD  241 (259)
T ss_pred             --HHHHhhheeeeeeCCeEeecCCHHHhcCHHHHHHHhCCc
Confidence              3578999999999999999999998863  23 345554

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=99.90  E-value=4.7e-23  Score=170.39  Aligned_cols=111  Identities=45%  Similarity=0.743  Sum_probs=88.8

Q ss_pred             eeEEEeeecccccCCCCHhHHHhHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Q psy8397           8 TIWCWQIISAQYSHRISVDDILDTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDS   87 (203)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~   87 (203)
                      ..+++|..  .++..+|+.|+.....+.                 .+||||||||++|||||+.+|+++||||||+|||+
T Consensus        84 i~~~~q~~--~~~~~~t~~~~i~~~~~~-----------------~~LS~G~~qrv~laral~~~p~illlDEP~~~LD~  144 (194)
T cd03213          84 IGYVPQDD--ILHPTLTVRETLMFAAKL-----------------RGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDS  144 (194)
T ss_pred             EEEccCcc--cCCCCCcHHHHHHHHHHh-----------------ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCH
Confidence            45555542  344567888765432111                 18999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEE
Q psy8397          88 NSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHL  167 (203)
Q Consensus        88 ~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v  167 (203)
                      .+++.+++.|+++.++|+|+|++||+++.                                          .+..+||++
T Consensus       145 ~~~~~l~~~l~~~~~~~~tiii~sh~~~~------------------------------------------~~~~~~d~v  182 (194)
T cd03213         145 SSALQVMSLLRRLADTGRTIICSIHQPSS------------------------------------------EIFELFDKL  182 (194)
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEEecCchH------------------------------------------HHHHhcCEE
Confidence            99999999999998668888888887631                                          356789999


Q ss_pred             EEEeCCeEEeeC
Q psy8397         168 YVIAEGHCVYKG  179 (203)
Q Consensus       168 ~vl~~G~i~~~g  179 (203)
                      ++|++|++++.|
T Consensus       183 ~~l~~G~i~~~~  194 (194)
T cd03213         183 LLLSQGRVIYFG  194 (194)
T ss_pred             EEEeCCEEEecC
Confidence            999999998754

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.90  E-value=4.5e-23  Score=172.51  Aligned_cols=106  Identities=28%  Similarity=0.372  Sum_probs=89.5

Q ss_pred             eeEEEeeecccccCCCCHhHHHhH---------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy8397           8 TIWCWQIISAQYSHRISVDDILDT---------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFL   78 (203)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~---------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlL   78 (203)
                      ..|.+|.  ..++..+|+.|+...         .+++.++++.+++.+..++++.+||||||||++|||+++.+|+++||
T Consensus        84 i~~~~q~--~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llll  161 (214)
T PRK13543         84 MAYLGHL--PGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLL  161 (214)
T ss_pred             eEEeecC--cccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            4455543  234555788876532         24567889999999889999999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q psy8397          79 DEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPS  115 (203)
Q Consensus        79 DEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~  115 (203)
                      ||||+|||+.+++.+++.|+++.++|.|+|++||+++
T Consensus       162 DEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~  198 (214)
T PRK13543        162 DEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAY  198 (214)
T ss_pred             eCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChh
Confidence            9999999999999999999999877888888888864

>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.90  E-value=5.8e-23  Score=178.63  Aligned_cols=117  Identities=28%  Similarity=0.429  Sum_probs=101.1

Q ss_pred             CCCCHhHHHhH------HHHHHHHHHHcCCcc-cccccCCCCCHHHHHHHHHHHHHhcC---CCEEEEeCCCCCCCHHHH
Q psy8397          21 HRISVDDILDT------IGLVDDILDTIGLVL-SKHTLCGRLSGGQKKRLSIALELIDN---PPIMFLDEPTTGLDSNST   90 (203)
Q Consensus        21 ~~~~~~~~~~~------~~~v~~~L~~~~L~~-~~~~~v~~LSgGqrqrl~iA~aL~~~---P~vLlLDEPt~gLD~~~~   90 (203)
                      ..+|+.|..+.      .+++.++++.+||.. ..++++.+|||||+||+.||++|+.+   |++++|||||+|||+..+
T Consensus       129 ~~ltv~e~~~~~~~~~~~~~~~~~L~~vgL~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~  208 (261)
T cd03271         129 LDMTVEEALEFFENIPKIARKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDV  208 (261)
T ss_pred             hcCCHHHHHHHHHhhhhHHHHHHHHHHcCCchhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHH
Confidence            45788877643      245677899999987 58999999999999999999999996   799999999999999999


Q ss_pred             HHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEE
Q psy8397          91 NQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVI  170 (203)
Q Consensus        91 ~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl  170 (203)
                      ..+++.|+++.++|.|||++||+++                                           .+ +.||+++.|
T Consensus       209 ~~l~~~L~~l~~~g~tvIiitH~~~-------------------------------------------~i-~~aD~ii~L  244 (261)
T cd03271         209 KKLLEVLQRLVDKGNTVVVIEHNLD-------------------------------------------VI-KCADWIIDL  244 (261)
T ss_pred             HHHHHHHHHHHhCCCEEEEEeCCHH-------------------------------------------HH-HhCCEEEEe
Confidence            9999999999877888888888863                                           23 469999999


Q ss_pred             ------eCCeEEeeCCc
Q psy8397         171 ------AEGHCVYKGSS  181 (203)
Q Consensus       171 ------~~G~i~~~g~~  181 (203)
                            ++|++++.|+|
T Consensus       245 gp~~g~~~G~iv~~Gt~  261 (261)
T cd03271         245 GPEGGDGGGQVVASGTP  261 (261)
T ss_pred             cCCcCCCCCEEEEeCCC
Confidence                  89999999975

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.90  E-value=5.4e-23  Score=169.59  Aligned_cols=112  Identities=46%  Similarity=0.680  Sum_probs=90.0

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLD   86 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD   86 (203)
                      ...|.+|..  .++..+|+.+++.....    ++             +|||||+||++|||||+.+|++|+|||||+|||
T Consensus        80 ~i~~~~q~~--~~~~~~tv~~~l~~~~~----~~-------------~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD  140 (192)
T cd03232          80 STGYVEQQD--VHSPNLTVREALRFSAL----LR-------------GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLD  140 (192)
T ss_pred             ceEEecccC--ccccCCcHHHHHHHHHH----Hh-------------cCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCC
Confidence            345555532  34566888887553211    10             899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCE
Q psy8397          87 SNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDH  166 (203)
Q Consensus        87 ~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~  166 (203)
                      +.++..+++.|++++++|.|||++||++++                                          .+...||+
T Consensus       141 ~~~~~~l~~~l~~~~~~~~tiiivtH~~~~------------------------------------------~~~~~~d~  178 (192)
T cd03232         141 SQAAYNIVRFLKKLADSGQAILCTIHQPSA------------------------------------------SIFEKFDR  178 (192)
T ss_pred             HHHHHHHHHHHHHHHHcCCEEEEEEcCChH------------------------------------------HHHhhCCE
Confidence            999999999999988668888888888641                                          25678999


Q ss_pred             EEEEeC-CeEEeeC
Q psy8397         167 LYVIAE-GHCVYKG  179 (203)
Q Consensus       167 v~vl~~-G~i~~~g  179 (203)
                      +++|++ |++++.|
T Consensus       179 i~~l~~~g~i~~~g  192 (192)
T cd03232         179 LLLLKRGGKTVYFG  192 (192)
T ss_pred             EEEEcCCCeEEeCC
Confidence            999998 9998865

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.90  E-value=2.1e-23  Score=193.60  Aligned_cols=104  Identities=22%  Similarity=0.340  Sum_probs=92.3

Q ss_pred             HHHHHHHHHcCCcc-cccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CeEEEE
Q psy8397          33 GLVDDILDTIGLVL-SKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGG-RTIVCT  110 (203)
Q Consensus        33 ~~v~~~L~~~~L~~-~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g-~tvi~~  110 (203)
                      +++.++++.+||.+ ..++++++|||||||||+||+||+.+|++|||||||+|||+.++..+++.|++++++| .|||++
T Consensus       379 ~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviiv  458 (490)
T PRK10938        379 KLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFV  458 (490)
T ss_pred             HHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEE
Confidence            46788999999987 8899999999999999999999999999999999999999999999999999998664 468888


Q ss_pred             ecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHh-hcCEEEEEeCCeEEeeC
Q psy8397         111 IHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFE-MVDHLYVIAEGHCVYKG  179 (203)
Q Consensus       111 tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~-~~d~v~vl~~G~i~~~g  179 (203)
                      ||+++                                           .+.. +||++++|++|++++.-
T Consensus       459 sHd~~-------------------------------------------~~~~~~~d~v~~l~~G~i~~~~  485 (490)
T PRK10938        459 SHHAE-------------------------------------------DAPACITHRLEFVPDGDIYRYV  485 (490)
T ss_pred             ecchh-------------------------------------------hhhhhhheeEEEecCCceEEee
Confidence            88864                                           2455 69999999999987653

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=99.90  E-value=1.9e-23  Score=175.39  Aligned_cols=98  Identities=29%  Similarity=0.470  Sum_probs=84.2

Q ss_pred             CCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhh
Q psy8397          43 GLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMV  122 (203)
Q Consensus        43 ~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~  122 (203)
                      ++....++++.+||||||||++||++|+.+|+++||||||+|||+.+++.+++.|+++. +|+|||++||+++       
T Consensus       128 ~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-------  199 (229)
T cd03254         128 GYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLS-------  199 (229)
T ss_pred             cccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHH-------
Confidence            34444566789999999999999999999999999999999999999999999999985 4788888888864       


Q ss_pred             hccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         123 DHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                                                          .+ ..||++++|++|++++.|+.+++.
T Consensus       200 ------------------------------------~~-~~~d~i~~l~~g~~~~~~~~~~~~  225 (229)
T cd03254         200 ------------------------------------TI-KNADKILVLDDGKIIEEGTHDELL  225 (229)
T ss_pred             ------------------------------------HH-hhCCEEEEEeCCeEEEeCCHHHHH
Confidence                                                23 359999999999999988776543

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG0065|consensus

Probab=99.90  E-value=8.4e-25  Score=219.16  Aligned_cols=130  Identities=43%  Similarity=0.758  Sum_probs=116.5

Q ss_pred             HHHHHHHHHHcCCcccccccCCC----CCHHHHHHHHHHHHHhcCC-CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCe
Q psy8397          32 IGLVDDILDTIGLVLSKHTLCGR----LSGGQKKRLSIALELIDNP-PIMFLDEPTTGLDSNSTNQCVAMLKALARGGRT  106 (203)
Q Consensus        32 ~~~v~~~L~~~~L~~~~~~~v~~----LSgGqrqrl~iA~aL~~~P-~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~t  106 (203)
                      .+.|+++++.++|.++++.-|+.    ||.+||||+.||..|+.+| .+|||||||||||..++..+++++|+++..|+|
T Consensus       903 ~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqt  982 (1391)
T KOG0065|consen  903 YEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQT  982 (1391)
T ss_pred             HHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCe
Confidence            47899999999999999999987    9999999999999999999 899999999999999999999999999977777


Q ss_pred             EEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEe-CCeEEeeCCccc--
Q psy8397         107 IVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIA-EGHCVYKGSSAN--  183 (203)
Q Consensus       107 vi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~-~G~i~~~g~~~~--  183 (203)
                      ||||.|+|+                                          ..+++.+|++++|+ .|+++|.|++.+  
T Consensus       983 IlCTIHQPS------------------------------------------~~ife~FD~LLLLkrGGqtVY~G~lG~~s 1020 (1391)
T KOG0065|consen  983 ILCTIHQPS------------------------------------------IDIFEAFDELLLLKRGGQTVYFGPLGENS 1020 (1391)
T ss_pred             EEEEecCCc------------------------------------------HHHHHHHhHHHHHhcCCeEEEecCccccc
Confidence            777777765                                          46788899999888 689999999864  


Q ss_pred             --chhHHHhcC-CCCCCCCCCCC
Q psy8397         184 --TIPYLQTIG-LHCPQYHNPAD  203 (203)
Q Consensus       184 --~~~~~~~~g-~~~p~~~~~~d  203 (203)
                        +++||++.| ..||.-.||||
T Consensus      1021 ~~li~YFes~~~~~~~~~~NPA~ 1043 (1391)
T KOG0065|consen 1021 SKLIEYFESIGGVKCISDENPAE 1043 (1391)
T ss_pred             HHHHHHHHhcCCccCCCCCChHH
Confidence              567999986 89999889996

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=99.90  E-value=3.6e-23  Score=171.63  Aligned_cols=93  Identities=26%  Similarity=0.396  Sum_probs=80.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCc
Q psy8397          52 CGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNS  131 (203)
Q Consensus        52 v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~  131 (203)
                      ..+|||||+||++|||+|+.+|++++|||||+|||+.++..+++.|++++++|.|||++||+++                
T Consensus       102 ~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~----------------  165 (200)
T cd03217         102 NEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQR----------------  165 (200)
T ss_pred             cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH----------------
Confidence            4689999999999999999999999999999999999999999999999866788888888753                


Q ss_pred             hhHHHHHHHHhhhCCceEEEeecCchhHHHh-hcCEEEEEeCCeEEeeCCcccchhHH
Q psy8397         132 TNQCVAMLKALARGGRTIVCTIHQPSATIFE-MVDHLYVIAEGHCVYKGSSANTIPYL  188 (203)
Q Consensus       132 ~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~-~~d~v~vl~~G~i~~~g~~~~~~~~~  188 (203)
                                                 .+.. +||++++|++|++++.| +.++...+
T Consensus       166 ---------------------------~~~~~~~d~i~~l~~G~i~~~~-~~~~~~~~  195 (200)
T cd03217         166 ---------------------------LLDYIKPDRVHVLYDGRIVKSG-DKELALEI  195 (200)
T ss_pred             ---------------------------HHHHhhCCEEEEEECCEEEEEc-cHHHHhhh
Confidence                                       3555 79999999999999998 44454433

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.90  E-value=3.1e-23  Score=169.49  Aligned_cols=106  Identities=24%  Similarity=0.440  Sum_probs=85.2

Q ss_pred             ceeEEEeeec-ccccCCCCHhHHHhHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Q psy8397           7 GTIWCWQIIS-AQYSHRISVDDILDTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGL   85 (203)
Q Consensus         7 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gL   85 (203)
                      ...+++|... ..+.+.+|+.|++.....                    ||||||||++||+||+.+|++|||||||+||
T Consensus        76 ~i~~~~q~~~~~~~~~~~t~~e~l~~~~~--------------------LS~G~~qrl~la~al~~~p~llllDEP~~~L  135 (182)
T cd03215          76 GIAYVPEDRKREGLVLDLSVAENIALSSL--------------------LSGGNQQKVVLARWLARDPRVLILDEPTRGV  135 (182)
T ss_pred             CeEEecCCcccCcccCCCcHHHHHHHHhh--------------------cCHHHHHHHHHHHHHccCCCEEEECCCCcCC
Confidence            3555565432 224556788776433211                    9999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcC
Q psy8397          86 DSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVD  165 (203)
Q Consensus        86 D~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d  165 (203)
                      |+.+++.+++.++++.++|.|+|++||+++                                           .+.++||
T Consensus       136 D~~~~~~l~~~l~~~~~~~~tiii~sh~~~-------------------------------------------~~~~~~d  172 (182)
T cd03215         136 DVGAKAEIYRLIRELADAGKAVLLISSELD-------------------------------------------ELLGLCD  172 (182)
T ss_pred             CHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-------------------------------------------HHHHhCC
Confidence            999999999999999766788888888753                                           4678999


Q ss_pred             EEEEEeCCeE
Q psy8397         166 HLYVIAEGHC  175 (203)
Q Consensus       166 ~v~vl~~G~i  175 (203)
                      +++++++|++
T Consensus       173 ~v~~l~~G~i  182 (182)
T cd03215         173 RILVMYEGRI  182 (182)
T ss_pred             EEEEecCCcC
Confidence            9999999974

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=99.90  E-value=4.3e-23  Score=173.21  Aligned_cols=130  Identities=13%  Similarity=0.087  Sum_probs=104.8

Q ss_pred             cccCCCCHhHHHhHH--------H-HHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Q psy8397          18 QYSHRISVDDILDTI--------G-LVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSN   88 (203)
Q Consensus        18 ~~~~~~~~~~~~~~~--------~-~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~   88 (203)
                      .+++.+|+.|++...        + ....+.+.+++....+++++.||||||||++||+||+.+|+++||||||+++|+.
T Consensus        59 ~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~  138 (213)
T PRK15177         59 FILPGLTGEENARMMASLYGLDGDEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNA  138 (213)
T ss_pred             ccCCcCcHHHHHHHHHHHcCCCHHHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHH
Confidence            355678988876431        1 1233446678888889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEE
Q psy8397          89 STNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLY  168 (203)
Q Consensus        89 ~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~  168 (203)
                      +++.+++.+.+..+ +.|+|++||++.                                           .+..+||+++
T Consensus       139 ~~~~~~~~l~~~~~-~~~ii~vsH~~~-------------------------------------------~~~~~~d~i~  174 (213)
T PRK15177        139 TQLRMQAALACQLQ-QKGLIVLTHNPR-------------------------------------------LIKEHCHAFG  174 (213)
T ss_pred             HHHHHHHHHHHHhh-CCcEEEEECCHH-------------------------------------------HHHHhcCeeE
Confidence            99999998765432 356777777753                                           3677999999


Q ss_pred             EEeCCeEEeeCCcccchhHHHhc
Q psy8397         169 VIAEGHCVYKGSSANTIPYLQTI  191 (203)
Q Consensus       169 vl~~G~i~~~g~~~~~~~~~~~~  191 (203)
                      +|++|++++.|+.++...+++.+
T Consensus       175 ~l~~G~i~~~~~~~~~~~~~~~~  197 (213)
T PRK15177        175 VLLHGKITMCEDLAQATALFEQY  197 (213)
T ss_pred             EEECCeEEEeCCHHHHHHHHHHH
Confidence            99999999999998887665544

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=99.90  E-value=2.3e-23  Score=175.58  Aligned_cols=98  Identities=34%  Similarity=0.574  Sum_probs=85.4

Q ss_pred             CCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhh
Q psy8397          43 GLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMV  122 (203)
Q Consensus        43 ~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~  122 (203)
                      ++....++++.+||||||||++||+||+.+|++|||||||+|||+.++..+++.|+++.+ |.|||++||+++       
T Consensus       126 ~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~-------  197 (236)
T cd03253         126 GYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLS-------  197 (236)
T ss_pred             cccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-------
Confidence            444456677889999999999999999999999999999999999999999999999876 888888888864       


Q ss_pred             hccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         123 DHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                                                          .+. .||++++|++|++++.|+++++.
T Consensus       198 ------------------------------------~~~-~~d~~~~l~~g~i~~~~~~~~~~  223 (236)
T cd03253         198 ------------------------------------TIV-NADKIIVLKDGRIVERGTHEELL  223 (236)
T ss_pred             ------------------------------------HHH-hCCEEEEEECCEEEeeCCHHHHh
Confidence                                                243 49999999999999998877654

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.90  E-value=8.6e-24  Score=177.49  Aligned_cols=117  Identities=28%  Similarity=0.436  Sum_probs=103.9

Q ss_pred             HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEE
Q psy8397          31 TIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVC  109 (203)
Q Consensus        31 ~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~  109 (203)
                      .+..+.++++.++|.+..+++..+||||||||..+|..++++.+.+|||||.++||.+....+++.|++++++ |+||++
T Consensus       112 D~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~Ktivi  191 (252)
T COG4604         112 DRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVV  191 (252)
T ss_pred             HHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEE
Confidence            4667899999999999999999999999999999999999999999999999999999999999999999964 555555


Q ss_pred             EecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccchh--H
Q psy8397         110 TIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTIP--Y  187 (203)
Q Consensus       110 ~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~~--~  187 (203)
                      +-||                                          ++ ++..++|.|+-+++|+++..|+|++++.  .
T Consensus       192 VlHD------------------------------------------IN-fAS~YsD~IVAlK~G~vv~~G~~~eii~~~~  228 (252)
T COG4604         192 VLHD------------------------------------------IN-FASCYSDHIVALKNGKVVKQGSPDEIIQPEI  228 (252)
T ss_pred             EEec------------------------------------------cc-HHHhhhhheeeecCCEEEecCCHHHhcCHHH
Confidence            5555                                          44 5788999999999999999999999873  4


Q ss_pred             HHh
Q psy8397         188 LQT  190 (203)
Q Consensus       188 ~~~  190 (203)
                      +++
T Consensus       229 L~e  231 (252)
T COG4604         229 LSE  231 (252)
T ss_pred             HHH
Confidence            544

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=99.90  E-value=6.7e-23  Score=171.76  Aligned_cols=106  Identities=23%  Similarity=0.386  Sum_probs=87.8

Q ss_pred             ceeEEEeeecccccCCCCHhHHHh------------HHHHHHHHHHHcCCcc-cccccCCCCCHHHHHHHHHHHHHhcCC
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILD------------TIGLVDDILDTIGLVL-SKHTLCGRLSGGQKKRLSIALELIDNP   73 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~v~~~L~~~~L~~-~~~~~v~~LSgGqrqrl~iA~aL~~~P   73 (203)
                      +..+.+|..  .++..+|+.|++.            ..+++.++++.+|+.+ ..++++.+||||||||++||+||+.+|
T Consensus        91 ~i~~~~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p  168 (224)
T TIGR02324        91 TIGYVSQFL--RVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADY  168 (224)
T ss_pred             ceEEEeccc--ccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCC
Confidence            456667643  2445677777642            1346678899999976 458899999999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCC
Q psy8397          74 PIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQP  114 (203)
Q Consensus        74 ~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~  114 (203)
                      ++++|||||+|||+.++..+.+.|+++.++|.|||++||++
T Consensus       169 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~  209 (224)
T TIGR02324       169 PILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDE  209 (224)
T ss_pred             CEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence            99999999999999999999999999986688888888885

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=99.90  E-value=6e-23  Score=172.94  Aligned_cols=106  Identities=24%  Similarity=0.293  Sum_probs=87.0

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH----------HHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhcCCCE
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT----------IGLVDDILDTIGLV-LSKHTLCGRLSGGQKKRLSIALELIDNPPI   75 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~v~~~L~~~~L~-~~~~~~v~~LSgGqrqrl~iA~aL~~~P~v   75 (203)
                      +..+.+|...  ++. .|+.|++..          .+++.++++.+++. ...++++.+|||||+||++||+||+.+|++
T Consensus        82 ~i~~~~q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~l  158 (225)
T PRK10247         82 QVSYCAQTPT--LFG-DTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKV  158 (225)
T ss_pred             ccEEEecccc--ccc-ccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence            4556666532  333 488876531          23567899999996 578999999999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCC
Q psy8397          76 MFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPS  115 (203)
Q Consensus        76 LlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~  115 (203)
                      ++|||||+|||+.++..+.+.|+++.++ |.|||++||+++
T Consensus       159 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~  199 (225)
T PRK10247        159 LLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKD  199 (225)
T ss_pred             EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChH
Confidence            9999999999999999999999998754 778888888764

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.90  E-value=5.7e-23  Score=170.53  Aligned_cols=97  Identities=25%  Similarity=0.340  Sum_probs=86.1

Q ss_pred             ccCCCCHhHHHhH---------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Q psy8397          19 YSHRISVDDILDT---------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNS   89 (203)
Q Consensus        19 ~~~~~~~~~~~~~---------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~   89 (203)
                      +...+|+.|++..         .++++++++.+|+.+..++++.+||||||||++||+||+.+|++++|||||+|||+.+
T Consensus        85 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~  164 (204)
T PRK13538         85 IKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQG  164 (204)
T ss_pred             cCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHH
Confidence            4455788887532         3467889999999988899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCeEEEEecCCC
Q psy8397          90 TNQCVAMLKALARGGRTIVCTIHQPS  115 (203)
Q Consensus        90 ~~~i~~~l~~l~~~g~tvi~~tH~~~  115 (203)
                      +..+++.|++++++|.|||++||+++
T Consensus       165 ~~~l~~~l~~~~~~~~tiii~sh~~~  190 (204)
T PRK13538        165 VARLEALLAQHAEQGGMVILTTHQDL  190 (204)
T ss_pred             HHHHHHHHHHHHHCCCEEEEEecChh
Confidence            99999999999877889999999875

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.90  E-value=3.5e-23  Score=182.52  Aligned_cols=108  Identities=27%  Similarity=0.364  Sum_probs=93.6

Q ss_pred             HHHHHHHHcCCc----ccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEE
Q psy8397          34 LVDDILDTIGLV----LSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVC  109 (203)
Q Consensus        34 ~v~~~L~~~~L~----~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~  109 (203)
                      ++.++++.+++.    ...++++.+||||||||++||+||+.+|++|||||||+|||+.++..+++.|+++.+ +.|||+
T Consensus       176 ~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~-~~tiii  254 (305)
T PRK14264        176 LVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTVVV  254 (305)
T ss_pred             HHHHHHHHcCCchhhhHHhcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEE
Confidence            467788888873    456888999999999999999999999999999999999999999999999999875 377888


Q ss_pred             EecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEE-EEEeCCeEEeeCCcccch
Q psy8397         110 TIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHL-YVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       110 ~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v-~vl~~G~i~~~g~~~~~~  185 (203)
                      +||+++                                           .+..+||++ +++++|++++.|+++++.
T Consensus       255 vtH~~~-------------------------------------------~i~~~~d~i~~~l~~G~i~~~g~~~~~~  288 (305)
T PRK14264        255 VTHNMQ-------------------------------------------QAARISDQTAVFLTGGELVEYDDTDKIF  288 (305)
T ss_pred             EEcCHH-------------------------------------------HHHHhcCEEEEEecCCEEEEeCCHHHHH
Confidence            888753                                           367899997 577999999999987654

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.89  E-value=1.5e-22  Score=168.40  Aligned_cols=118  Identities=25%  Similarity=0.414  Sum_probs=91.8

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLD   86 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD   86 (203)
                      ...|++|.  ..++..+|+.+++.......           .++++..||||||||++||+||+.+|++|||||||+|||
T Consensus        84 ~i~~~~q~--~~~~~~~tv~~~l~~~~~~~-----------~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD  150 (202)
T cd03233          84 EIIYVSEE--DVHFPTLTVRETLDFALRCK-----------GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLD  150 (202)
T ss_pred             eEEEEecc--cccCCCCcHHHHHhhhhhhc-----------cccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCC
Confidence            34566653  23456689988765432211           678899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcC
Q psy8397          87 SNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVD  165 (203)
Q Consensus        87 ~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d  165 (203)
                      +.+++.+++.|+++.++ +.|+|+++|..                                          ...+.++||
T Consensus       151 ~~~~~~~~~~l~~~~~~~~~t~ii~~~h~------------------------------------------~~~~~~~~d  188 (202)
T cd03233         151 SSTALEILKCIRTMADVLKTTTFVSLYQA------------------------------------------SDEIYDLFD  188 (202)
T ss_pred             HHHHHHHHHHHHHHHHhCCCEEEEEEcCC------------------------------------------HHHHHHhCC
Confidence            99999999999999754 55555544432                                          124678999


Q ss_pred             EEEEEeCCeEEeeC
Q psy8397         166 HLYVIAEGHCVYKG  179 (203)
Q Consensus       166 ~v~vl~~G~i~~~g  179 (203)
                      ++++|++|++++.|
T Consensus       189 ~i~~l~~G~i~~~g  202 (202)
T cd03233         189 KVLVLYEGRQIYYG  202 (202)
T ss_pred             eEEEEECCEEEecC
Confidence            99999999998754

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=99.89  E-value=8.9e-23  Score=169.20  Aligned_cols=107  Identities=27%  Similarity=0.371  Sum_probs=90.0

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDE   80 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDE   80 (203)
                      +..|.+|.  ..+....|+.|+...      .+++.++++.+|+.+..++++.+||||||||++|||||+.+|+++||||
T Consensus        74 ~i~~~~q~--~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDE  151 (201)
T cd03231          74 GLLYLGHA--PGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDE  151 (201)
T ss_pred             heEEeccc--cccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence            34455543  223455788887532      4567889999999988899999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q psy8397          81 PTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPS  115 (203)
Q Consensus        81 Pt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~  115 (203)
                      ||+|||+.+++.+++.|+++.++|.|+|++||++.
T Consensus       152 Pt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~  186 (201)
T cd03231         152 PTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDL  186 (201)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch
Confidence            99999999999999999998877888888888864

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.89  E-value=7.6e-23  Score=191.90  Aligned_cols=107  Identities=25%  Similarity=0.381  Sum_probs=93.0

Q ss_pred             HHHHHHHHHcCCccc-ccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEe
Q psy8397          33 GLVDDILDTIGLVLS-KHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTI  111 (203)
Q Consensus        33 ~~v~~~L~~~~L~~~-~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~t  111 (203)
                      +++.++++.+|+... .++++.+|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++   .|.|||++|
T Consensus       133 ~~~~~~l~~~gl~~~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivs  209 (530)
T PRK15064        133 ARAGELLLGVGIPEEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE---RNSTMIIIS  209 (530)
T ss_pred             HHHHHHHHhCCCChhHhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh---CCCeEEEEe
Confidence            457788999999764 3578999999999999999999999999999999999999999999998863   478888888


Q ss_pred             cCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeE-EeeCCcccch
Q psy8397         112 HQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHC-VYKGSSANTI  185 (203)
Q Consensus       112 H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i-~~~g~~~~~~  185 (203)
                      |+++                                           .+..+||++++|++|++ ++.|+++++.
T Consensus       210 Hd~~-------------------------------------------~~~~~~d~i~~l~~g~i~~~~g~~~~~~  241 (530)
T PRK15064        210 HDRH-------------------------------------------FLNSVCTHMADLDYGELRVYPGNYDEYM  241 (530)
T ss_pred             CCHH-------------------------------------------HHHhhcceEEEEeCCEEEEecCCHHHHH
Confidence            8864                                           46789999999999999 5888887553

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.89  E-value=6.4e-23  Score=191.30  Aligned_cols=137  Identities=26%  Similarity=0.379  Sum_probs=119.9

Q ss_pred             CCCCceeEEEeeecccccCCCCHhHHHh----------------HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHH
Q psy8397           3 DSNHGTIWCWQIISAQYSHRISVDDILD----------------TIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIA   66 (203)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA   66 (203)
                      +.++|....||..+  +.+.+||-|++.                .++++.++|+.+|+....++++++||.||||.|+||
T Consensus        80 A~~~GI~~V~QEl~--L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIA  157 (500)
T COG1129          80 ALAAGIATVHQELS--LVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIA  157 (500)
T ss_pred             HHhCCcEEEeechh--ccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHH
Confidence            34678888888766  468899998762                356788899999986559999999999999999999


Q ss_pred             HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCC
Q psy8397          67 LELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGG  146 (203)
Q Consensus        67 ~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  146 (203)
                      |||..++++|+|||||+.|+......+++.+++|+++|.+||++||.++                               
T Consensus       158 rAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~-------------------------------  206 (500)
T COG1129         158 RALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLD-------------------------------  206 (500)
T ss_pred             HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHH-------------------------------
Confidence            9999999999999999999999999999999999988999999999875                               


Q ss_pred             ceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCc-ccc
Q psy8397         147 RTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSS-ANT  184 (203)
Q Consensus       147 ~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~-~~~  184 (203)
                                  +++++|||+.||++|+++..++. .++
T Consensus       207 ------------Ei~~i~DritVlRDG~~v~~~~~~~~~  233 (500)
T COG1129         207 ------------EVFEIADRITVLRDGRVVGTRPTAAET  233 (500)
T ss_pred             ------------HHHHhcCEEEEEeCCEEeeecccccCC
Confidence                        48999999999999999988873 443

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=99.89  E-value=1.2e-22  Score=168.49  Aligned_cols=124  Identities=20%  Similarity=0.220  Sum_probs=95.3

Q ss_pred             CceeEEEeeecccccCCCCHhHHHhHHH--HHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Q psy8397           6 HGTIWCWQIISAQYSHRISVDDILDTIG--LVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTT   83 (203)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~   83 (203)
                      .+..+++|..  .++. .|+.+++....  ...++.+.++    .++++..|||||+||++|||+|+.+|+++||||||+
T Consensus        82 ~~i~~v~q~~--~~~~-~tv~~~l~~~~~~~~~~~~~~l~----~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~  154 (207)
T cd03369          82 SSLTIIPQDP--TLFS-GTIRSNLDPFDEYSDEEIYGALR----VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATA  154 (207)
T ss_pred             hhEEEEecCC--cccC-ccHHHHhcccCCCCHHHHHHHhh----ccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcc
Confidence            4566777653  2333 48887653210  1122333333    467899999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhh
Q psy8397          84 GLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEM  163 (203)
Q Consensus        84 gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~  163 (203)
                      |||+.++..+++.|+++. +|.|+|++||+++                                           .+.. 
T Consensus       155 ~LD~~~~~~l~~~l~~~~-~~~tiii~th~~~-------------------------------------------~~~~-  189 (207)
T cd03369         155 SIDYATDALIQKTIREEF-TNSTILTIAHRLR-------------------------------------------TIID-  189 (207)
T ss_pred             cCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-------------------------------------------HHhh-
Confidence            999999999999999985 4788888888864                                           2444 


Q ss_pred             cCEEEEEeCCeEEeeCCc
Q psy8397         164 VDHLYVIAEGHCVYKGSS  181 (203)
Q Consensus       164 ~d~v~vl~~G~i~~~g~~  181 (203)
                      ||++++|++|+++..|++
T Consensus       190 ~d~v~~l~~g~i~~~g~~  207 (207)
T cd03369         190 YDKILVMDAGEVKEYDHP  207 (207)
T ss_pred             CCEEEEEECCEEEecCCC
Confidence            999999999999888764

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>PRK13409 putative ATPase RIL; Provisional

Probab=99.89  E-value=8.5e-23  Score=194.87  Aligned_cols=132  Identities=22%  Similarity=0.290  Sum_probs=107.4

Q ss_pred             cCCCCHhHHHhH-------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHH
Q psy8397          20 SHRISVDDILDT-------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQ   92 (203)
Q Consensus        20 ~~~~~~~~~~~~-------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~   92 (203)
                      ...+||.+++..       ...+.++++.++|.+..++++.+|||||||||+||++|+.+|++|||||||+|||+.++..
T Consensus       412 ~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~  491 (590)
T PRK13409        412 DYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLA  491 (590)
T ss_pred             CCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHH
Confidence            355788887643       2346789999999989999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEe
Q psy8397          93 CVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIA  171 (203)
Q Consensus        93 i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~  171 (203)
                      +++.|++++++ |.|||++|||++                                           .+..+||++++++
T Consensus       492 l~~~l~~l~~~~g~tviivsHD~~-------------------------------------------~~~~~aDrvivl~  528 (590)
T PRK13409        492 VAKAIRRIAEEREATALVVDHDIY-------------------------------------------MIDYISDRLMVFE  528 (590)
T ss_pred             HHHHHHHHHHhCCCEEEEEeCCHH-------------------------------------------HHHHhCCEEEEEc
Confidence            99999999764 777777777753                                           4678999999996


Q ss_pred             CCeEEeeCCcccc-------hhHHHhcCCCC
Q psy8397         172 EGHCVYKGSSANT-------IPYLQTIGLHC  195 (203)
Q Consensus       172 ~G~i~~~g~~~~~-------~~~~~~~g~~~  195 (203)
                      + ++...|....-       -.+++.+++.+
T Consensus       529 ~-~~~~~g~~~~~~~~~~~~~~~l~~~~i~~  558 (590)
T PRK13409        529 G-EPGKHGHASGPMDMREGMNRFLKELGITF  558 (590)
T ss_pred             C-cceeeeecCCchhHHHHHHHHHHHcCCEE
Confidence            4 77766654332       13566666653

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.89  E-value=3.9e-23  Score=180.15  Aligned_cols=113  Identities=28%  Similarity=0.389  Sum_probs=104.4

Q ss_pred             HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEE
Q psy8397          31 TIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVC  109 (203)
Q Consensus        31 ~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~  109 (203)
                      ..++.+.+.+.++|+...+.++..||-|||.|+.||.+|+++|+||||||||-|||...+..+.+++++..++ ++||++
T Consensus       133 F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVll  212 (325)
T COG4586         133 FAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLL  212 (325)
T ss_pred             HHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHHHHhhCceEEE
Confidence            5778888999999999999999999999999999999999999999999999999999999999999999864 888888


Q ss_pred             EecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccchh
Q psy8397         110 TIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTIP  186 (203)
Q Consensus       110 ~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~~  186 (203)
                      +||+++                                           .+..+|+||++|+.|+++++|+.+++..
T Consensus       213 TTH~~~-------------------------------------------di~~lc~rv~~I~~Gqlv~dg~l~~l~~  246 (325)
T COG4586         213 TTHIFD-------------------------------------------DIATLCDRVLLIDQGQLVFDGTLAQLQE  246 (325)
T ss_pred             Eecchh-------------------------------------------hHHHhhhheEEeeCCcEeecccHHHHHH
Confidence            888875                                           3789999999999999999999887754

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.89  E-value=1e-22  Score=192.58  Aligned_cols=131  Identities=25%  Similarity=0.298  Sum_probs=100.7

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH------HHHHHHHHHHcCCcc-------cccccC----CCCCHHHHHHHHHHHHH
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT------IGLVDDILDTIGLVL-------SKHTLC----GRLSGGQKKRLSIALEL   69 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~v~~~L~~~~L~~-------~~~~~v----~~LSgGqrqrl~iA~aL   69 (203)
                      ...+++|..  .+ ..-|+.|++..      .+++.++++..++.+       -.++.+    .+||||||||++|||||
T Consensus       424 ~i~~v~Q~~--~L-F~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAl  500 (588)
T PRK11174        424 HLSWVGQNP--QL-PHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARAL  500 (588)
T ss_pred             heEEecCCC--cC-CCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHH
Confidence            345666532  23 33477776532      345666666655433       234444    46999999999999999


Q ss_pred             hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceE
Q psy8397          70 IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTI  149 (203)
Q Consensus        70 ~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tv  149 (203)
                      +.+|++|+|||||++||+.+.+.+.+.|+++. +++|+|++||.++                                  
T Consensus       501 l~~~~IliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiItHrl~----------------------------------  545 (588)
T PRK11174        501 LQPCQLLLLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVTHQLE----------------------------------  545 (588)
T ss_pred             hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecChH----------------------------------
Confidence            99999999999999999999999999998875 4778888888763                                  


Q ss_pred             EEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         150 VCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       150 i~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                                ....||+|+++++|+++..|+.+++.
T Consensus       546 ----------~i~~aD~Iivl~~G~i~e~G~~~eL~  571 (588)
T PRK11174        546 ----------DLAQWDQIWVMQDGQIVQQGDYAELS  571 (588)
T ss_pred             ----------HHHhCCEEEEEeCCeEeecCCHHHHH
Confidence                      34679999999999999999988876

>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional

Probab=99.89  E-value=3.1e-22  Score=192.52  Aligned_cols=134  Identities=24%  Similarity=0.396  Sum_probs=114.0

Q ss_pred             CceeEEEeeecccccCCCCHhHHHh------------HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCC
Q psy8397           6 HGTIWCWQIISAQYSHRISVDDILD------------TIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNP   73 (203)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P   73 (203)
                      .+..+++|..  .+++.+|+.|+..            ..+++.++++.+||.+..++++++|||||+||++|||||+.+|
T Consensus        86 ~~i~~v~q~~--~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~P  163 (648)
T PRK10535         86 EHFGFIFQRY--HLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGG  163 (648)
T ss_pred             ccEEEEeCCc--ccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence            4667888764  3455677776543            2346788999999999999999999999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEee
Q psy8397          74 PIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTI  153 (203)
Q Consensus        74 ~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~  153 (203)
                      ++|+|||||+|||+.+++.+.+.++++.++|.|+|++||+++                                      
T Consensus       164 ~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~--------------------------------------  205 (648)
T PRK10535        164 QVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQ--------------------------------------  205 (648)
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHH--------------------------------------
Confidence            999999999999999999999999999866888888888753                                      


Q ss_pred             cCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         154 HQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       154 h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                           .+ ..||++++|++|++++.|++++..
T Consensus       206 -----~~-~~~d~i~~l~~G~i~~~g~~~~~~  231 (648)
T PRK10535        206 -----VA-AQAERVIEIRDGEIVRNPPAQEKV  231 (648)
T ss_pred             -----HH-HhCCEEEEEECCEEEeecCccccc
Confidence                 23 469999999999999999998765

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.89  E-value=2.3e-22  Score=165.51  Aligned_cols=80  Identities=31%  Similarity=0.468  Sum_probs=72.9

Q ss_pred             HHHHHHcCCcc-cccccCCCCCHHHHHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEec
Q psy8397          36 DDILDTIGLVL-SKHTLCGRLSGGQKKRLSIALELIDN--PPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH  112 (203)
Q Consensus        36 ~~~L~~~~L~~-~~~~~v~~LSgGqrqrl~iA~aL~~~--P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH  112 (203)
                      .++++.++|.. ..++++.+||||||||++||++|+.+  |+++||||||+|||+.+++.+.+.|+++.+.|.|||++||
T Consensus        68 ~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH  147 (176)
T cd03238          68 LQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEH  147 (176)
T ss_pred             HHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence            46789999986 48999999999999999999999999  9999999999999999999999999998766888888888


Q ss_pred             CCC
Q psy8397         113 QPS  115 (203)
Q Consensus       113 ~~~  115 (203)
                      +++
T Consensus       148 ~~~  150 (176)
T cd03238         148 NLD  150 (176)
T ss_pred             CHH
Confidence            753

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=99.89  E-value=1.7e-22  Score=163.91  Aligned_cols=78  Identities=35%  Similarity=0.639  Sum_probs=71.0

Q ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhH
Q psy8397          55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQ  134 (203)
Q Consensus        55 LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~  134 (203)
                      |||||+||++|||||+.+|++++|||||+|||+.++..+++.|+++.++|.|+|++||+++                   
T Consensus        96 LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~-------------------  156 (173)
T cd03230          96 LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILE-------------------  156 (173)
T ss_pred             cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-------------------
Confidence            9999999999999999999999999999999999999999999999866778888888753                   


Q ss_pred             HHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeE
Q psy8397         135 CVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHC  175 (203)
Q Consensus       135 ~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i  175 (203)
                                              .+..+||+++++++|++
T Consensus       157 ------------------------~~~~~~d~i~~l~~g~i  173 (173)
T cd03230         157 ------------------------EAERLCDRVAILNNGRI  173 (173)
T ss_pred             ------------------------HHHHhCCEEEEEeCCCC
Confidence                                    36678999999999864

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=99.89  E-value=1e-22  Score=170.85  Aligned_cols=80  Identities=34%  Similarity=0.498  Sum_probs=71.9

Q ss_pred             HHHHHHHc--CCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEec
Q psy8397          35 VDDILDTI--GLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH  112 (203)
Q Consensus        35 v~~~L~~~--~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH  112 (203)
                      +.++++.+  |+....++++.+||||||||++||++|+.+|++|||||||+|||+.++..+++.|+++.+ +.|+|++||
T Consensus       129 ~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sh  207 (226)
T cd03248         129 AHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPE-RRTVLVIAH  207 (226)
T ss_pred             cHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEEC
Confidence            35677778  788888999999999999999999999999999999999999999999999999999864 578888888


Q ss_pred             CCC
Q psy8397         113 QPS  115 (203)
Q Consensus       113 ~~~  115 (203)
                      +++
T Consensus       208 ~~~  210 (226)
T cd03248         208 RLS  210 (226)
T ss_pred             CHH
Confidence            764

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=99.88  E-value=1.6e-22  Score=173.69  Aligned_cols=98  Identities=23%  Similarity=0.315  Sum_probs=85.2

Q ss_pred             CCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhh
Q psy8397          43 GLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMV  122 (203)
Q Consensus        43 ~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~  122 (203)
                      ++....+.++.+|||||+||++|||||+.+|++|||||||+|||+.++..+++.++++. ++.|||++||++++      
T Consensus       145 ~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~~------  217 (257)
T cd03288         145 GLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAF-ADRTVVTIAHRVST------  217 (257)
T ss_pred             ccCcEeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc-CCCEEEEEecChHH------
Confidence            45555566778999999999999999999999999999999999999999999999875 47888888888642      


Q ss_pred             hccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         123 DHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                                                           +. .||++++|++|+++..|+++++.
T Consensus       218 -------------------------------------~~-~~dri~~l~~G~i~~~g~~~~~~  242 (257)
T cd03288         218 -------------------------------------IL-DADLVLVLSRGILVECDTPENLL  242 (257)
T ss_pred             -------------------------------------HH-hCCEEEEEECCEEEEeCCHHHHH
Confidence                                                 33 39999999999999999987764

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.88  E-value=2.4e-22  Score=189.90  Aligned_cols=103  Identities=21%  Similarity=0.407  Sum_probs=90.5

Q ss_pred             HHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecC
Q psy8397          34 LVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQ  113 (203)
Q Consensus        34 ~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~  113 (203)
                      ++.++++.+|+.. .++++++|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++.   .|||++||+
T Consensus       144 ~~~~~l~~~gl~~-~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~---~tviiisHd  219 (556)
T PRK11819        144 QLEIAMDALRCPP-WDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP---GTVVAVTHD  219 (556)
T ss_pred             HHHHHHHhCCCCc-ccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC---CeEEEEeCC
Confidence            4566788889864 789999999999999999999999999999999999999999999999998863   488888888


Q ss_pred             CCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEE-eeCCccc
Q psy8397         114 PSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCV-YKGSSAN  183 (203)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~-~~g~~~~  183 (203)
                      ++                                           .+..+||++++|++|+++ +.|+.++
T Consensus       220 ~~-------------------------------------------~~~~~~d~i~~l~~g~i~~~~g~~~~  247 (556)
T PRK11819        220 RY-------------------------------------------FLDNVAGWILELDRGRGIPWEGNYSS  247 (556)
T ss_pred             HH-------------------------------------------HHHhhcCeEEEEeCCEEEEecCCHHH
Confidence            64                                           467899999999999986 7887665

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=99.88  E-value=1.6e-22  Score=174.72  Aligned_cols=84  Identities=25%  Similarity=0.426  Sum_probs=77.5

Q ss_pred             HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEe
Q psy8397          32 IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTI  111 (203)
Q Consensus        32 ~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~t  111 (203)
                      ...+.++++.+|+.+..++++.+||||||||++||++|+.+|++++|||||+|||+.++..+++.|+++.++|+|||++|
T Consensus       117 ~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiS  196 (255)
T cd03236         117 RGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVE  196 (255)
T ss_pred             HHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEE
Confidence            45678899999999889999999999999999999999999999999999999999999999999999987678888888


Q ss_pred             cCCC
Q psy8397         112 HQPS  115 (203)
Q Consensus       112 H~~~  115 (203)
                      |+++
T Consensus       197 Hd~~  200 (255)
T cd03236         197 HDLA  200 (255)
T ss_pred             CCHH
Confidence            8753

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.88  E-value=2.1e-22  Score=193.47  Aligned_cols=109  Identities=27%  Similarity=0.428  Sum_probs=96.7

Q ss_pred             HHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEE
Q psy8397          32 IGLVDDILDTIGLV-LSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCT  110 (203)
Q Consensus        32 ~~~v~~~L~~~~L~-~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~  110 (203)
                      ..++.++|+.+++. ...+++++.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++  +| |||++
T Consensus       407 ~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~g-tvi~v  483 (638)
T PRK10636        407 EQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF--EG-ALVVV  483 (638)
T ss_pred             HHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-eEEEE
Confidence            35678899999996 4789999999999999999999999999999999999999999999999999987  34 88888


Q ss_pred             ecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEE-eeCCcccchh
Q psy8397         111 IHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCV-YKGSSANTIP  186 (203)
Q Consensus       111 tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~-~~g~~~~~~~  186 (203)
                      |||+.                                           .+..+||+++++.+|+++ +.|++++...
T Consensus       484 SHd~~-------------------------------------------~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  517 (638)
T PRK10636        484 SHDRH-------------------------------------------LLRSTTDDLYLVHDGKVEPFDGDLEDYQQ  517 (638)
T ss_pred             eCCHH-------------------------------------------HHHHhCCEEEEEECCEEEEcCCCHHHHHH
Confidence            88853                                           477899999999999997 8898887643

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.88  E-value=2.6e-22  Score=167.13  Aligned_cols=98  Identities=30%  Similarity=0.458  Sum_probs=87.6

Q ss_pred             ccCCCCHhHHHhH--------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH
Q psy8397          19 YSHRISVDDILDT--------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNST   90 (203)
Q Consensus        19 ~~~~~~~~~~~~~--------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~   90 (203)
                      +...+|+.+++..        .+++.++++.+|+.+..++++++||||||||++||+||+.+|++|||||||+|||+.++
T Consensus        84 ~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~  163 (207)
T PRK13539         84 MKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAV  163 (207)
T ss_pred             CCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence            3455788886532        34578899999998888999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCeEEEEecCCCc
Q psy8397          91 NQCVAMLKALARGGRTIVCTIHQPSA  116 (203)
Q Consensus        91 ~~i~~~l~~l~~~g~tvi~~tH~~~~  116 (203)
                      ..+++.|++++++|.|||++||++++
T Consensus       164 ~~l~~~l~~~~~~~~tiii~sH~~~~  189 (207)
T PRK13539        164 ALFAELIRAHLAQGGIVIAATHIPLG  189 (207)
T ss_pred             HHHHHHHHHHHHCCCEEEEEeCCchh
Confidence            99999999988789999999999875

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=99.88  E-value=3.6e-22  Score=162.51  Aligned_cols=83  Identities=31%  Similarity=0.621  Sum_probs=74.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCc
Q psy8397          52 CGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNS  131 (203)
Q Consensus        52 v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~  131 (203)
                      +..||||||||++|||||+.+|++|+|||||+|||+.+++.+++.|+++. +|.|||++||+++                
T Consensus        96 ~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~----------------  158 (178)
T cd03247          96 GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL-KDKTLIWITHHLT----------------  158 (178)
T ss_pred             cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH----------------
Confidence            78899999999999999999999999999999999999999999999985 4788888888864                


Q ss_pred             hhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeC
Q psy8397         132 TNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKG  179 (203)
Q Consensus       132 ~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g  179 (203)
                                                 .+ ..||++++|++|++++.|
T Consensus       159 ---------------------------~~-~~~d~~~~l~~g~i~~~~  178 (178)
T cd03247         159 ---------------------------GI-EHMDKILFLENGKIIMQG  178 (178)
T ss_pred             ---------------------------HH-HhCCEEEEEECCEEEecC
Confidence                                       24 469999999999998754

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=99.88  E-value=4.8e-22  Score=186.89  Aligned_cols=99  Identities=30%  Similarity=0.511  Sum_probs=85.8

Q ss_pred             CCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhh
Q psy8397          43 GLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMV  122 (203)
Q Consensus        43 ~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~  122 (203)
                      |+....+....+||||||||++||||++.+|++|+|||||+|||+.+.+.+.+.|+++..+|+|+|++||+++       
T Consensus       443 gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~-------  515 (544)
T TIGR01842       443 GYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPS-------  515 (544)
T ss_pred             ccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHH-------
Confidence            4444455567789999999999999999999999999999999999999999999998756788888888753       


Q ss_pred             hccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         123 DHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                                                           ....||+++++++|++++.|+++++.
T Consensus       516 -------------------------------------~~~~~d~i~~l~~G~i~~~g~~~~l~  541 (544)
T TIGR01842       516 -------------------------------------LLGCVDKILVLQDGRIARFGERDEVL  541 (544)
T ss_pred             -------------------------------------HHHhCCEEEEEECCEEEeeCCHHHHh
Confidence                                                 24679999999999999999987764

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.88  E-value=4.2e-22  Score=188.74  Aligned_cols=131  Identities=26%  Similarity=0.420  Sum_probs=106.2

Q ss_pred             ceeEEEeeecccccCCCCHhHHHh------HHHHHHHHHHHcCCcccccc----------cCCCCCHHHHHHHHHHHHHh
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILD------TIGLVDDILDTIGLVLSKHT----------LCGRLSGGQKKRLSIALELI   70 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~v~~~L~~~~L~~~~~~----------~v~~LSgGqrqrl~iA~aL~   70 (203)
                      ...|++|..  .+++ -|+.|++.      ..+.+.++++.+++.+..++          ...+||||||||++|||||+
T Consensus       415 ~i~~v~Q~~--~lf~-~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall  491 (574)
T PRK11160        415 AISVVSQRV--HLFS-ATLRDNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALL  491 (574)
T ss_pred             heeEEcccc--hhhc-ccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHh
Confidence            355666643  2333 48888763      34578889999998766443          34569999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEE
Q psy8397          71 DNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIV  150 (203)
Q Consensus        71 ~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi  150 (203)
                      .+|++|+|||||++||+.+.+.+.+.|+++. +|+|+|++||+++                                   
T Consensus       492 ~~~~ililDE~ts~lD~~t~~~i~~~l~~~~-~~~tviiitHr~~-----------------------------------  535 (574)
T PRK11160        492 HDAPLLLLDEPTEGLDAETERQILELLAEHA-QNKTVLMITHRLT-----------------------------------  535 (574)
T ss_pred             cCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecChh-----------------------------------
Confidence            9999999999999999999999999999875 4788888888864                                   


Q ss_pred             EeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         151 CTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       151 ~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                               ....||++++|++|+++..|+.+++.
T Consensus       536 ---------~~~~~d~i~~l~~G~i~~~g~~~~l~  561 (574)
T PRK11160        536 ---------GLEQFDRICVMDNGQIIEQGTHQELL  561 (574)
T ss_pred             ---------HHHhCCEEEEEeCCeEEEeCCHHHHH
Confidence                     23469999999999999999988775

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.88  E-value=2.9e-22  Score=161.62  Aligned_cols=80  Identities=28%  Similarity=0.499  Sum_probs=73.4

Q ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhH
Q psy8397          55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQ  134 (203)
Q Consensus        55 LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~  134 (203)
                      ||||||||++|||||+.+|+++||||||+|||+.+++.+++.|+++.++|.|+|++||+++                   
T Consensus        83 LS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-------------------  143 (163)
T cd03216          83 LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLD-------------------  143 (163)
T ss_pred             cCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-------------------
Confidence            9999999999999999999999999999999999999999999999866788888888753                   


Q ss_pred             HHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEe
Q psy8397         135 CVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVY  177 (203)
Q Consensus       135 ~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~  177 (203)
                                              .+...||+++++.+|++++
T Consensus       144 ------------------------~~~~~~d~~~~l~~g~i~~  162 (163)
T cd03216         144 ------------------------EVFEIADRVTVLRDGRVVG  162 (163)
T ss_pred             ------------------------HHHHhCCEEEEEECCEEEe
Confidence                                    3678899999999999875

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.88  E-value=4.2e-22  Score=188.69  Aligned_cols=131  Identities=26%  Similarity=0.269  Sum_probs=103.0

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH-----HHHHHHHHHHcCCcccc-------cccC----CCCCHHHHHHHHHHHHHh
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT-----IGLVDDILDTIGLVLSK-------HTLC----GRLSGGQKKRLSIALELI   70 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~L~~~~L~~~~-------~~~v----~~LSgGqrqrl~iA~aL~   70 (203)
                      ...|++|...  +++ -|+.+++..     .+++.++++.+|+.+..       ++.+    .+||||||||++|||||+
T Consensus       416 ~i~~v~Q~~~--lF~-~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl  492 (592)
T PRK10790        416 GVAMVQQDPV--VLA-DTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLV  492 (592)
T ss_pred             heEEEccCCc--ccc-chHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHH
Confidence            3455555432  323 477777643     45677888888765432       3333    469999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEE
Q psy8397          71 DNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIV  150 (203)
Q Consensus        71 ~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi  150 (203)
                      .+|++|+|||||++||+.+.+.+.+.|+++.+ ++|+|++||+++                                   
T Consensus       493 ~~~~illlDEpts~LD~~t~~~i~~~l~~~~~-~~tvIivtHr~~-----------------------------------  536 (592)
T PRK10790        493 QTPQILILDEATANIDSGTEQAIQQALAAVRE-HTTLVVIAHRLS-----------------------------------  536 (592)
T ss_pred             hCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecchH-----------------------------------
Confidence            99999999999999999999999999998753 578888888753                                   


Q ss_pred             EeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         151 CTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       151 ~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                               ....||+|++|++|+++..|+++++.
T Consensus       537 ---------~l~~~D~ii~l~~G~i~~~G~~~~L~  562 (592)
T PRK10790        537 ---------TIVEADTILVLHRGQAVEQGTHQQLL  562 (592)
T ss_pred             ---------HHHhCCEEEEEECCEEEEEcCHHHHH
Confidence                     35579999999999999999998875

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=99.88  E-value=4e-22  Score=161.72  Aligned_cols=60  Identities=40%  Similarity=0.641  Sum_probs=56.5

Q ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCC
Q psy8397          55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQP  114 (203)
Q Consensus        55 LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~  114 (203)
                      ||||||||++||+||+.+|++|||||||+|||+.++..+++.|++++++|+|+|++||++
T Consensus        97 LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~  156 (173)
T cd03246          97 LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRP  156 (173)
T ss_pred             cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            999999999999999999999999999999999999999999999986677888888875

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=99.88  E-value=5.8e-22  Score=163.60  Aligned_cols=107  Identities=26%  Similarity=0.383  Sum_probs=91.1

Q ss_pred             eeEEEeeecccccCCCCHhHHHhH--------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy8397           8 TIWCWQIISAQYSHRISVDDILDT--------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLD   79 (203)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~--------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLD   79 (203)
                      ..|.+|.  ..++..+|+.+++..        .+++.++++.+++.+..++++++||||||||++||+|++.+|++++||
T Consensus        75 i~~~~q~--~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD  152 (198)
T TIGR01189        75 ILYLGHL--PGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILD  152 (198)
T ss_pred             eEEeccC--cccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEe
Confidence            4455542  234455788886532        235788999999998899999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCc
Q psy8397          80 EPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSA  116 (203)
Q Consensus        80 EPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~  116 (203)
                      |||+|||+.++..+++.|+++.++|.|||++||++..
T Consensus       153 EPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~  189 (198)
T TIGR01189       153 EPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLG  189 (198)
T ss_pred             CCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccccc
Confidence            9999999999999999999998789999999999764

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=99.88  E-value=3.5e-22  Score=192.44  Aligned_cols=129  Identities=27%  Similarity=0.345  Sum_probs=102.5

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH-----HHHHHHHHHHcCCcccc-------cccC----CCCCHHHHHHHHHHHHHh
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT-----IGLVDDILDTIGLVLSK-------HTLC----GRLSGGQKKRLSIALELI   70 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~L~~~~L~~~~-------~~~v----~~LSgGqrqrl~iA~aL~   70 (203)
                      ...+++|...  + ..-|+.|++..     .+++.++++..|+.+..       ++.+    .+||||||||++|||||+
T Consensus       528 ~i~~v~Q~~~--l-f~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll  604 (686)
T TIGR03797       528 QLGVVLQNGR--L-MSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALV  604 (686)
T ss_pred             ccEEEccCCc--c-CcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHh
Confidence            4556665432  2 23477777632     46677788888776543       3333    469999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEE
Q psy8397          71 DNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIV  150 (203)
Q Consensus        71 ~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi  150 (203)
                      .+|++|+|||||++||+.+.+.+.+.|+++   ++|+|++||+++                                   
T Consensus       605 ~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~-----------------------------------  646 (686)
T TIGR03797       605 RKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLS-----------------------------------  646 (686)
T ss_pred             cCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChH-----------------------------------
Confidence            999999999999999999999999998876   478888888863                                   


Q ss_pred             EeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         151 CTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       151 ~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                               ....||+|++|++|+++..|+.+++.
T Consensus       647 ---------~i~~~D~Iivl~~G~iv~~G~~~~Ll  672 (686)
T TIGR03797       647 ---------TIRNADRIYVLDAGRVVQQGTYDELM  672 (686)
T ss_pred             ---------HHHcCCEEEEEECCEEEEECCHHHHH
Confidence                     34669999999999999999998875

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=99.88  E-value=3.9e-22  Score=188.21  Aligned_cols=119  Identities=32%  Similarity=0.475  Sum_probs=93.9

Q ss_pred             CCHhHHHhH------HHHHHHHHHHcCC-------cccccccCC----CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Q psy8397          23 ISVDDILDT------IGLVDDILDTIGL-------VLSKHTLCG----RLSGGQKKRLSIALELIDNPPIMFLDEPTTGL   85 (203)
Q Consensus        23 ~~~~~~~~~------~~~v~~~L~~~~L-------~~~~~~~v~----~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gL   85 (203)
                      -|+.|++..      .+.+.++++..++       .+..|+.++    .||||||||++||||++.+|++|+|||||++|
T Consensus       417 ~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILDEaTSal  496 (567)
T COG1132         417 GTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSAL  496 (567)
T ss_pred             ccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEecccccc
Confidence            566666532      2344444444432       223455554    79999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcC
Q psy8397          86 DSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVD  165 (203)
Q Consensus        86 D~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d  165 (203)
                      |+.+.+.+.+.++++. +|+|+|+++|.++                                           .+. .||
T Consensus       497 D~~tE~~I~~~l~~l~-~~rT~iiIaHRls-------------------------------------------ti~-~aD  531 (567)
T COG1132         497 DTETEALIQDALKKLL-KGRTTLIIAHRLS-------------------------------------------TIK-NAD  531 (567)
T ss_pred             CHHhHHHHHHHHHHHh-cCCEEEEEeccHh-------------------------------------------HHH-hCC
Confidence            9999999999999877 5678888888864                                           233 499


Q ss_pred             EEEEEeCCeEEeeCCcccchh
Q psy8397         166 HLYVIAEGHCVYKGSSANTIP  186 (203)
Q Consensus       166 ~v~vl~~G~i~~~g~~~~~~~  186 (203)
                      +|+|+++|++++.|+++++..
T Consensus       532 ~IiVl~~G~i~e~G~h~eLl~  552 (567)
T COG1132         532 RIIVLDNGRIVERGTHEELLA  552 (567)
T ss_pred             EEEEEECCEEEEecCHHHHHH
Confidence            999999999999999998864

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=99.87  E-value=4.7e-22  Score=192.03  Aligned_cols=130  Identities=26%  Similarity=0.298  Sum_probs=101.8

Q ss_pred             ceeEEEeeecccccCCCCHhHHHh------HHHHHHHHHHHcCCcccc-------cccC----CCCCHHHHHHHHHHHHH
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILD------TIGLVDDILDTIGLVLSK-------HTLC----GRLSGGQKKRLSIALEL   69 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~v~~~L~~~~L~~~~-------~~~v----~~LSgGqrqrl~iA~aL   69 (203)
                      ...+++|...  + ..-|+.|++.      ..+++.++++..++.+..       ++.+    .+||||||||++|||||
T Consensus       554 ~i~~v~Q~~~--l-f~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARal  630 (710)
T TIGR03796       554 SVAMVDQDIF--L-FEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARAL  630 (710)
T ss_pred             heeEEecCCh--h-hhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHH
Confidence            4456665432  2 3457777763      245666777777664432       3333    46999999999999999


Q ss_pred             hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceE
Q psy8397          70 IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTI  149 (203)
Q Consensus        70 ~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tv  149 (203)
                      +.+|++|||||||++||+.+.+.+++.|++   .++|+|++||+++                                  
T Consensus       631 l~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~----------------------------------  673 (710)
T TIGR03796       631 VRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLS----------------------------------  673 (710)
T ss_pred             hhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHH----------------------------------
Confidence            999999999999999999999999999875   4789999998864                                  


Q ss_pred             EEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccchh
Q psy8397         150 VCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTIP  186 (203)
Q Consensus       150 i~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~~  186 (203)
                                ....||+|++|++|+++..|+.+++.+
T Consensus       674 ----------~i~~~D~Iivl~~G~i~~~G~~~~Ll~  700 (710)
T TIGR03796       674 ----------TIRDCDEIIVLERGKVVQRGTHEELWA  700 (710)
T ss_pred             ----------HHHhCCEEEEEeCCEEEEecCHHHHHH
Confidence                      345699999999999999999988753

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>KOG0059|consensus

Probab=99.87  E-value=1.6e-22  Score=200.60  Aligned_cols=137  Identities=24%  Similarity=0.409  Sum_probs=114.9

Q ss_pred             CCCceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhc
Q psy8397           4 SNHGTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELID   71 (203)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~   71 (203)
                      ...+..||+|. .+ +...+|.+|.+..            .+.++.+++.++|.+.++++++.+|||+|||+++|.|++.
T Consensus       638 ~~~~iGyCPQ~-d~-l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig  715 (885)
T KOG0059|consen  638 VRKQLGYCPQF-DA-LWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIG  715 (885)
T ss_pred             hhhhcccCCch-hh-hhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhc
Confidence            34568899985 33 5678999997743            4457889999999999999999999999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhh
Q psy8397          72 NPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALA  143 (203)
Q Consensus        72 ~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (203)
                      +|++++|||||+|+||.+++.+|+++.+++++|+.||+|||.++| .+.+|+|++|+-.|..+|..++|.++
T Consensus       716 ~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE-~EaLCtR~aImv~G~l~ciGs~q~LK  786 (885)
T KOG0059|consen  716 DPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEE-AEALCTRTAIMVIGQLRCIGSPQELK  786 (885)
T ss_pred             CCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHH-HHHHhhhhheeecCeeEEecChHHHH
Confidence            999999999999999999999999999999888899999999875 56666666666666666666665554

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=99.87  E-value=5.2e-22  Score=161.74  Aligned_cols=77  Identities=35%  Similarity=0.600  Sum_probs=70.1

Q ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchh
Q psy8397          55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTN  133 (203)
Q Consensus        55 LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~  133 (203)
                      ||||||||++||+||+.+|++++|||||+|||+.++..+++.|++++++ |.|+|++||+++                  
T Consensus       101 lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~------------------  162 (178)
T cd03229         101 LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLD------------------  162 (178)
T ss_pred             CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH------------------
Confidence            9999999999999999999999999999999999999999999999876 778888888753                  


Q ss_pred             HHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCe
Q psy8397         134 QCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGH  174 (203)
Q Consensus       134 ~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~  174 (203)
                                               .+..+||++++|++|+
T Consensus       163 -------------------------~~~~~~d~i~~l~~g~  178 (178)
T cd03229         163 -------------------------EAARLADRVVVLRDGK  178 (178)
T ss_pred             -------------------------HHHHhcCEEEEEeCCC
Confidence                                     3667899999999884

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.87  E-value=1.2e-21  Score=185.18  Aligned_cols=130  Identities=18%  Similarity=0.233  Sum_probs=104.2

Q ss_pred             eEEEeeecccccCCCCHhHHHhH----------HHHHHHHHHHcCCcc-cccccCCCCCHHHHHHHHHHHHHhcCCCEEE
Q psy8397           9 IWCWQIISAQYSHRISVDDILDT----------IGLVDDILDTIGLVL-SKHTLCGRLSGGQKKRLSIALELIDNPPIMF   77 (203)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~----------~~~v~~~L~~~~L~~-~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLl   77 (203)
                      .|.+|... .+...+|+.+++..          ..++..+++.+|+.. ..++++++||||||||++||++|+.+|++||
T Consensus       390 ~~v~q~~~-~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lll  468 (556)
T PRK11819        390 AYVDQSRD-ALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLL  468 (556)
T ss_pred             EEEeCchh-hcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence            45555321 34556888887532          224567899999964 5799999999999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCch
Q psy8397          78 LDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPS  157 (203)
Q Consensus        78 LDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~  157 (203)
                      |||||+|||+.++..+++.|+++.  | |||++||+++                                          
T Consensus       469 LDEPt~~LD~~~~~~l~~~l~~~~--~-tvi~vtHd~~------------------------------------------  503 (556)
T PRK11819        469 LDEPTNDLDVETLRALEEALLEFP--G-CAVVISHDRW------------------------------------------  503 (556)
T ss_pred             EcCCCCCCCHHHHHHHHHHHHhCC--C-eEEEEECCHH------------------------------------------
Confidence            999999999999999999999873  3 7888888854                                          


Q ss_pred             hHHHhhcCEEEEEeC-CeEE-eeCCcccch
Q psy8397         158 ATIFEMVDHLYVIAE-GHCV-YKGSSANTI  185 (203)
Q Consensus       158 ~~i~~~~d~v~vl~~-G~i~-~~g~~~~~~  185 (203)
                       .+..+||+++++++ |++. +.|+.++..
T Consensus       504 -~~~~~~d~i~~l~~~g~~~~~~g~~~~~~  532 (556)
T PRK11819        504 -FLDRIATHILAFEGDSQVEWFEGNFQEYE  532 (556)
T ss_pred             -HHHHhCCEEEEEECCCeEEEecCCHHHHH
Confidence             46789999999985 7876 678776554

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.87  E-value=1.3e-21  Score=184.75  Aligned_cols=131  Identities=19%  Similarity=0.256  Sum_probs=104.0

Q ss_pred             eeEEEeeecccccCCCCHhHHHhH----------HHHHHHHHHHcCCcc-cccccCCCCCHHHHHHHHHHHHHhcCCCEE
Q psy8397           8 TIWCWQIISAQYSHRISVDDILDT----------IGLVDDILDTIGLVL-SKHTLCGRLSGGQKKRLSIALELIDNPPIM   76 (203)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~----------~~~v~~~L~~~~L~~-~~~~~v~~LSgGqrqrl~iA~aL~~~P~vL   76 (203)
                      ..|.+|... .++..+|+.+++..          ..++.++++.+|+.. ..++++++|||||||||+||++|+.+|++|
T Consensus       387 i~~v~q~~~-~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~ll  465 (552)
T TIGR03719       387 LAYVDQSRD-ALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVL  465 (552)
T ss_pred             EEEEeCCcc-ccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEE
Confidence            345555322 24456788887643          224567899999964 579999999999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCc
Q psy8397          77 FLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQP  156 (203)
Q Consensus        77 lLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~  156 (203)
                      ||||||+|||+.++..+++.|+++.  | |||++||+++                                         
T Consensus       466 lLDEPt~~LD~~~~~~l~~~l~~~~--~-~viivsHd~~-----------------------------------------  501 (552)
T TIGR03719       466 LLDEPTNDLDVETLRALEEALLEFA--G-CAVVISHDRW-----------------------------------------  501 (552)
T ss_pred             EEeCCCCCCCHHHHHHHHHHHHHCC--C-eEEEEeCCHH-----------------------------------------
Confidence            9999999999999999999999873  3 7888888853                                         


Q ss_pred             hhHHHhhcCEEEEEeC-CeEE-eeCCcccch
Q psy8397         157 SATIFEMVDHLYVIAE-GHCV-YKGSSANTI  185 (203)
Q Consensus       157 ~~~i~~~~d~v~vl~~-G~i~-~~g~~~~~~  185 (203)
                        .+..+||++++|++ |++. +.|+.++..
T Consensus       502 --~~~~~~d~i~~l~~~~~~~~~~g~~~~~~  530 (552)
T TIGR03719       502 --FLDRIATHILAFEGDSHVEWFEGNYSEYE  530 (552)
T ss_pred             --HHHHhCCEEEEEECCCeEEEeCCCHHHHH
Confidence              46789999999986 5765 667765543

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=99.87  E-value=1.3e-21  Score=163.50  Aligned_cols=106  Identities=25%  Similarity=0.325  Sum_probs=80.7

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH-----HHHHHHHHHHcCCccc-----------ccccCCCCCHHHHHHHHHHHHHh
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT-----IGLVDDILDTIGLVLS-----------KHTLCGRLSGGQKKRLSIALELI   70 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~L~~~~L~~~-----------~~~~v~~LSgGqrqrl~iA~aL~   70 (203)
                      +..|.+|...  ++ ..|+.+++..     .+++.++++.+++.+.           .++++..||||||||++||++|+
T Consensus        80 ~i~~~~q~~~--~~-~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~  156 (218)
T cd03290          80 SVAYAAQKPW--LL-NATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALY  156 (218)
T ss_pred             eEEEEcCCCc--cc-cccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHh
Confidence            4556665432  33 4688776642     2344566777776432           34678999999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHH--HHHHHHhCCCeEEEEecCCC
Q psy8397          71 DNPPIMFLDEPTTGLDSNSTNQCVA--MLKALARGGRTIVCTIHQPS  115 (203)
Q Consensus        71 ~~P~vLlLDEPt~gLD~~~~~~i~~--~l~~l~~~g~tvi~~tH~~~  115 (203)
                      .+|++|||||||+|||+.++..+++  +++.+.+.|.|+|++||+++
T Consensus       157 ~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~  203 (218)
T cd03290         157 QNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQ  203 (218)
T ss_pred             hCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChH
Confidence            9999999999999999999999998  66766655778888888753

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=99.87  E-value=6.2e-22  Score=190.93  Aligned_cols=133  Identities=25%  Similarity=0.374  Sum_probs=102.3

Q ss_pred             ceeEEEeeecccccCCCCHhHHHh------HHHHHHHHHHHcCCcccc-------ccc----CCCCCHHHHHHHHHHHHH
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILD------TIGLVDDILDTIGLVLSK-------HTL----CGRLSGGQKKRLSIALEL   69 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~v~~~L~~~~L~~~~-------~~~----v~~LSgGqrqrl~iA~aL   69 (203)
                      ...+++|...  + ..-|+.|++.      ..+++.++++..++.+..       ++.    ..+||||||||++|||||
T Consensus       540 ~i~~v~Q~~~--l-f~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARal  616 (694)
T TIGR03375       540 NIGYVPQDPR--L-FYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARAL  616 (694)
T ss_pred             ccEEECCChh--h-hhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHH
Confidence            3445554322  2 2347777653      245566677776654432       333    346999999999999999


Q ss_pred             hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceE
Q psy8397          70 IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTI  149 (203)
Q Consensus        70 ~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tv  149 (203)
                      +.+|++++|||||++||+.+.+.+.+.|+++. +++|+|++||+++                                  
T Consensus       617 l~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~iiItHrl~----------------------------------  661 (694)
T TIGR03375       617 LRDPPILLLDEPTSAMDNRSEERFKDRLKRWL-AGKTLVLVTHRTS----------------------------------  661 (694)
T ss_pred             hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEecCHH----------------------------------
Confidence            99999999999999999999999999999875 3678888888763                                  


Q ss_pred             EEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccchhH
Q psy8397         150 VCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTIPY  187 (203)
Q Consensus       150 i~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~~~  187 (203)
                                ....||+|++|++|++++.|+.+++++.
T Consensus       662 ----------~~~~~D~iivl~~G~i~e~G~~~eLl~~  689 (694)
T TIGR03375       662 ----------LLDLVDRIIVMDNGRIVADGPKDQVLEA  689 (694)
T ss_pred             ----------HHHhCCEEEEEeCCEEEeeCCHHHHHHH
Confidence                      3468999999999999999999887653

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=99.87  E-value=3.4e-22  Score=193.94  Aligned_cols=92  Identities=32%  Similarity=0.520  Sum_probs=82.1

Q ss_pred             ccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCC
Q psy8397          50 TLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDS  129 (203)
Q Consensus        50 ~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~  129 (203)
                      ..-.+||||||||++|||||+++|+||+||||||+||+.+.+.+.+.|.++. +|+|+|++||.++              
T Consensus       605 E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~-~~~T~I~IaHRl~--------------  669 (709)
T COG2274         605 EGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL-QGRTVIIIAHRLS--------------  669 (709)
T ss_pred             cCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh-cCCeEEEEEccch--------------
Confidence            3344699999999999999999999999999999999999999999999976 4678888888763              


Q ss_pred             CchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccchh
Q psy8397         130 NSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTIP  186 (203)
Q Consensus       130 ~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~~  186 (203)
                                                    ..+.||+|+||++|+++.+|+.+++..
T Consensus       670 ------------------------------ti~~adrIiVl~~Gkiv~~gs~~ell~  696 (709)
T COG2274         670 ------------------------------TIRSADRIIVLDQGKIVEQGSHEELLA  696 (709)
T ss_pred             ------------------------------HhhhccEEEEccCCceeccCCHHHHHH
Confidence                                          478899999999999999999998864

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=99.87  E-value=8.4e-22  Score=185.93  Aligned_cols=130  Identities=26%  Similarity=0.360  Sum_probs=101.3

Q ss_pred             eeEEEeeecccccCCCCHhHHHhH-------HHHHHHHHHHcCCccc-------ccccC----CCCCHHHHHHHHHHHHH
Q psy8397           8 TIWCWQIISAQYSHRISVDDILDT-------IGLVDDILDTIGLVLS-------KHTLC----GRLSGGQKKRLSIALEL   69 (203)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~-------~~~v~~~L~~~~L~~~-------~~~~v----~~LSgGqrqrl~iA~aL   69 (203)
                      ..+.+|...  + ..-|+.|++..       .+++.++++..|+.+.       .|+.+    .+||||||||++|||||
T Consensus       419 i~~v~Q~~~--l-f~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARal  495 (582)
T PRK11176        419 VALVSQNVH--L-FNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARAL  495 (582)
T ss_pred             ceEEccCce--e-ecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHH
Confidence            445555422  2 23577776542       3567777777765432       34444    45999999999999999


Q ss_pred             hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceE
Q psy8397          70 IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTI  149 (203)
Q Consensus        70 ~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tv  149 (203)
                      +.+|++|+|||||++||+.+...+.+.|+++. +++|+|++||+++                                  
T Consensus       496 l~~~~ililDEptsaLD~~t~~~i~~~l~~~~-~~~tvI~VtHr~~----------------------------------  540 (582)
T PRK11176        496 LRDSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRLS----------------------------------  540 (582)
T ss_pred             HhCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchH----------------------------------
Confidence            99999999999999999999999999999874 3678888888753                                  


Q ss_pred             EEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         150 VCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       150 i~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                                ..+.||+|+++++|+++..|+.+++.
T Consensus       541 ----------~~~~~D~Ii~l~~g~i~e~g~~~~l~  566 (582)
T PRK11176        541 ----------TIEKADEILVVEDGEIVERGTHAELL  566 (582)
T ss_pred             ----------HHHhCCEEEEEECCEEEEeCCHHHHH
Confidence                      45679999999999999999998876

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.87  E-value=1.7e-21  Score=161.29  Aligned_cols=107  Identities=18%  Similarity=0.215  Sum_probs=91.1

Q ss_pred             eeEEEeeecccccCCCCHhHHHhH-------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q psy8397           8 TIWCWQIISAQYSHRISVDDILDT-------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDE   80 (203)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~-------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDE   80 (203)
                      ..|.+|.  ..++...|+.++...       ..++.++++.+++.+..++++++|||||+||++||||++.+|++|+|||
T Consensus        76 i~~~~q~--~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDE  153 (200)
T PRK13540         76 LCFVGHR--SGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDE  153 (200)
T ss_pred             eEEeccc--cccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence            3454542  223456888887643       2357889999999888899999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCc
Q psy8397          81 PTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSA  116 (203)
Q Consensus        81 Pt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~  116 (203)
                      ||+|||+.++..+++.|++++++|.|||++||++..
T Consensus       154 P~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~  189 (200)
T PRK13540        154 PLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLP  189 (200)
T ss_pred             CCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchh
Confidence            999999999999999999998789999999999753

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=99.86  E-value=1.6e-21  Score=188.48  Aligned_cols=131  Identities=23%  Similarity=0.251  Sum_probs=101.5

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH-------HHHHHHHHHHcCCccc-------ccccC----CCCCHHHHHHHHHHHH
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT-------IGLVDDILDTIGLVLS-------KHTLC----GRLSGGQKKRLSIALE   68 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~v~~~L~~~~L~~~-------~~~~v----~~LSgGqrqrl~iA~a   68 (203)
                      ...|++|...  ++ .-|+.|++..       .+++.++++..++.+.       .++.+    .+||||||||++||||
T Consensus       549 ~i~~v~Q~~~--lf-~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARa  625 (708)
T TIGR01193       549 FINYLPQEPY--IF-SGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARA  625 (708)
T ss_pred             heEEEecCce--eh-hHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHH
Confidence            4556665422  32 3477776542       3456667776665432       23333    4699999999999999


Q ss_pred             HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCce
Q psy8397          69 LIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRT  148 (203)
Q Consensus        69 L~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t  148 (203)
                      ++.+|++|+|||||++||+.+.+.+.+.|+++  +|+|+|++||+++                                 
T Consensus       626 ll~~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr~~---------------------------------  670 (708)
T TIGR01193       626 LLTDSKVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLS---------------------------------  670 (708)
T ss_pred             HhhCCCEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecchH---------------------------------
Confidence            99999999999999999999999999999875  4788888888864                                 


Q ss_pred             EEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccchh
Q psy8397         149 IVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTIP  186 (203)
Q Consensus       149 vi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~~  186 (203)
                                 ....||+|++|++|+++..|+.+++..
T Consensus       671 -----------~~~~~D~i~~l~~G~i~~~G~~~~L~~  697 (708)
T TIGR01193       671 -----------VAKQSDKIIVLDHGKIIEQGSHDELLD  697 (708)
T ss_pred             -----------HHHcCCEEEEEECCEEEEECCHHHHHh
Confidence                       346799999999999999999887753

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.86  E-value=9.4e-22  Score=183.47  Aligned_cols=110  Identities=32%  Similarity=0.523  Sum_probs=95.4

Q ss_pred             HHHHHHHHHHcCCccccccc-------CC----CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy8397          32 IGLVDDILDTIGLVLSKHTL-------CG----RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKAL  100 (203)
Q Consensus        32 ~~~v~~~L~~~~L~~~~~~~-------v~----~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l  100 (203)
                      .+.+.++++.+||.+.....       ++    .||||||||++|||+|+++.++++|||||.|||+.+.+++++.+.+-
T Consensus       441 DEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~  520 (573)
T COG4987         441 DEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEH  520 (573)
T ss_pred             HHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHH
Confidence            56778889999887654333       33    69999999999999999999999999999999999999999999886


Q ss_pred             HhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCC
Q psy8397         101 ARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGS  180 (203)
Q Consensus       101 ~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~  180 (203)
                      . +|+|+|++||.+.                                            -.+.||+|+||++|+++.+|+
T Consensus       521 ~-~~kTll~vTHrL~--------------------------------------------~le~~drIivl~~Gkiie~G~  555 (573)
T COG4987         521 A-EGKTLLMVTHRLR--------------------------------------------GLERMDRIIVLDNGKIIEEGT  555 (573)
T ss_pred             h-cCCeEEEEecccc--------------------------------------------cHhhcCEEEEEECCeeeecCC
Confidence            5 4889999999864                                            257899999999999999999


Q ss_pred             cccchh
Q psy8397         181 SANTIP  186 (203)
Q Consensus       181 ~~~~~~  186 (203)
                      ++++..
T Consensus       556 ~~~Ll~  561 (573)
T COG4987         556 HAELLA  561 (573)
T ss_pred             HHhhhc
Confidence            998864

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.86  E-value=1.1e-21  Score=188.43  Aligned_cols=106  Identities=25%  Similarity=0.352  Sum_probs=92.4

Q ss_pred             HHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEe
Q psy8397          33 GLVDDILDTIGLV-LSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTI  111 (203)
Q Consensus        33 ~~v~~~L~~~~L~-~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~t  111 (203)
                      .++.++++.+|+. ...++++++|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++   +.|||+||
T Consensus       127 ~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~---~~tviivs  203 (638)
T PRK10636        127 SRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY---QGTLILIS  203 (638)
T ss_pred             HHHHHHHHhCCCCchhhcCchhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC---CCeEEEEe
Confidence            4678899999997 5789999999999999999999999999999999999999999999999988775   45888888


Q ss_pred             cCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEE-eeCCcccc
Q psy8397         112 HQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCV-YKGSSANT  184 (203)
Q Consensus       112 H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~-~~g~~~~~  184 (203)
                      |++.                                           ++..+||++++|++|++. +.|.....
T Consensus       204 Hd~~-------------------------------------------~l~~~~d~i~~L~~G~i~~~~g~~~~~  234 (638)
T PRK10636        204 HDRD-------------------------------------------FLDPIVDKIIHIEQQSLFEYTGNYSSF  234 (638)
T ss_pred             CCHH-------------------------------------------HHHHhcCEEEEEeCCEEEEecCCHHHH
Confidence            8853                                           467899999999999985 66765543

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.86  E-value=2.4e-21  Score=183.34  Aligned_cols=131  Identities=22%  Similarity=0.275  Sum_probs=100.4

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH------HHHHHHHHHHcCCcc-----------cccccCCCCCHHHHHHHHHHHHH
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT------IGLVDDILDTIGLVL-----------SKHTLCGRLSGGQKKRLSIALEL   69 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~v~~~L~~~~L~~-----------~~~~~v~~LSgGqrqrl~iA~aL   69 (203)
                      ...+++|..  .++. -|+.|++..      .+.+.++++..++.+           ..+....+||||||||++|||||
T Consensus       390 ~i~~v~q~~--~lf~-~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARal  466 (569)
T PRK10789        390 RLAVVSQTP--FLFS-DTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARAL  466 (569)
T ss_pred             heEEEccCC--eecc-ccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHH
Confidence            345566542  2333 477776532      345566666655532           22334457999999999999999


Q ss_pred             hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceE
Q psy8397          70 IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTI  149 (203)
Q Consensus        70 ~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tv  149 (203)
                      +.+|++++|||||++||+.+.+.+.+.|+++. +|+|+|++||+++                                  
T Consensus       467 l~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tii~itH~~~----------------------------------  511 (569)
T PRK10789        467 LLNAEILILDDALSAVDGRTEHQILHNLRQWG-EGRTVIISAHRLS----------------------------------  511 (569)
T ss_pred             hcCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchh----------------------------------
Confidence            99999999999999999999999999999875 5788888888864                                  


Q ss_pred             EEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         150 VCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       150 i~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                                ....||++++|++|+++..|+.+++.
T Consensus       512 ----------~~~~~d~i~~l~~G~i~~~g~~~~l~  537 (569)
T PRK10789        512 ----------ALTEASEILVMQHGHIAQRGNHDQLA  537 (569)
T ss_pred             ----------HHHcCCEEEEEeCCEEEEecCHHHHH
Confidence                      24569999999999999999988765

>PRK13409 putative ATPase RIL; Provisional

Probab=99.86  E-value=1.8e-21  Score=185.79  Aligned_cols=91  Identities=27%  Similarity=0.493  Sum_probs=83.1

Q ss_pred             CHhHHHh---HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy8397          24 SVDDILD---TIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKAL  100 (203)
Q Consensus        24 ~~~~~~~---~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l  100 (203)
                      ||.|++.   ..+++.++++.++|....++++++|||||||||+||++|+.+|++|||||||++||+.++..+++.|+++
T Consensus       179 tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l  258 (590)
T PRK13409        179 KVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIREL  258 (590)
T ss_pred             hHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence            7877653   2457889999999998999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCCeEEEEecCCC
Q psy8397         101 ARGGRTIVCTIHQPS  115 (203)
Q Consensus       101 ~~~g~tvi~~tH~~~  115 (203)
                      ++ |.|||++||+++
T Consensus       259 ~~-g~tvIivsHd~~  272 (590)
T PRK13409        259 AE-GKYVLVVEHDLA  272 (590)
T ss_pred             HC-CCEEEEEeCCHH
Confidence            87 888888888864

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.86  E-value=1.3e-21  Score=183.74  Aligned_cols=130  Identities=27%  Similarity=0.420  Sum_probs=105.7

Q ss_pred             eeEEEeeecccccCCCCHhHHH------hHHHHHHHHHHHcCCccccc------ccCCC----CCHHHHHHHHHHHHHhc
Q psy8397           8 TIWCWQIISAQYSHRISVDDIL------DTIGLVDDILDTIGLVLSKH------TLCGR----LSGGQKKRLSIALELID   71 (203)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~v~~~L~~~~L~~~~~------~~v~~----LSgGqrqrl~iA~aL~~   71 (203)
                      ..|..|  .+ |-..-|+.|++      ...+.+.++++..|+.++.+      +.+++    |||||+|||++||||++
T Consensus       397 i~~v~Q--~p-~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~  473 (559)
T COG4988         397 ISWVSQ--NP-YLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLS  473 (559)
T ss_pred             eeeeCC--CC-ccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcC
Confidence            455554  33 23445777776      34677888888888866544      34444    99999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEE
Q psy8397          72 NPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVC  151 (203)
Q Consensus        72 ~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~  151 (203)
                      +++++||||||++||.++.+.+.+.|.++.++ +|+|++||++.                                    
T Consensus       474 ~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~-ktvl~itHrl~------------------------------------  516 (559)
T COG4988         474 PASLLLLDEPTAHLDAETEQIILQALQELAKQ-KTVLVITHRLE------------------------------------  516 (559)
T ss_pred             CCCEEEecCCccCCCHhHHHHHHHHHHHHHhC-CeEEEEEcChH------------------------------------
Confidence            99999999999999999999999999999864 88888888863                                    


Q ss_pred             eecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         152 TIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       152 ~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                              ...-+|+|++|++|+++..|.++++.
T Consensus       517 --------~~~~~D~I~vld~G~l~~~g~~~~L~  542 (559)
T COG4988         517 --------DAADADRIVVLDNGRLVEQGTHEELS  542 (559)
T ss_pred             --------HHhcCCEEEEecCCceeccCCHHHHh
Confidence                    45679999999999999999998874

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.86  E-value=1.5e-21  Score=184.32  Aligned_cols=105  Identities=21%  Similarity=0.365  Sum_probs=90.4

Q ss_pred             HHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEec
Q psy8397          33 GLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH  112 (203)
Q Consensus        33 ~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH  112 (203)
                      .++.++++.+|+.. .++++++|||||||||+||++|+.+|++|||||||++||+.++..+.+.|+++.   .|||++||
T Consensus       141 ~~~~~~l~~~~l~~-~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~---~tvIiisH  216 (552)
T TIGR03719       141 RKLEIAMDALRCPP-WDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYP---GTVVAVTH  216 (552)
T ss_pred             HHHHHHHhhCCCCc-ccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCC---CeEEEEeC
Confidence            35667788888854 689999999999999999999999999999999999999999999999988752   48888888


Q ss_pred             CCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEE-eeCCcccc
Q psy8397         113 QPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCV-YKGSSANT  184 (203)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~-~~g~~~~~  184 (203)
                      +++                                           .+..+||++++|++|+++ +.|+++++
T Consensus       217 d~~-------------------------------------------~~~~~~d~v~~l~~g~i~~~~g~~~~~  246 (552)
T TIGR03719       217 DRY-------------------------------------------FLDNVAGWILELDRGRGIPWEGNYSSW  246 (552)
T ss_pred             CHH-------------------------------------------HHHhhcCeEEEEECCEEEEecCCHHHH
Confidence            753                                           467899999999999975 77887653

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=99.86  E-value=7.3e-21  Score=166.75  Aligned_cols=129  Identities=16%  Similarity=0.174  Sum_probs=95.5

Q ss_pred             eEEEeeecccccCCCCHhHHHhH-----HHHHHHHHHHcCCccc-----------ccccCCCCCHHHHHHHHHHHHHhcC
Q psy8397           9 IWCWQIISAQYSHRISVDDILDT-----IGLVDDILDTIGLVLS-----------KHTLCGRLSGGQKKRLSIALELIDN   72 (203)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~L~~~~L~~~-----------~~~~v~~LSgGqrqrl~iA~aL~~~   72 (203)
                      .+.+|..  .+++ .|+.|++..     ..++.+.++.+++.+.           .++++.+||||||||++|||+|+.+
T Consensus       101 ~yv~q~~--~l~~-~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~  177 (282)
T cd03291         101 SFSSQFS--WIMP-GTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKD  177 (282)
T ss_pred             EEEeCcc--cccc-cCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcC
Confidence            3555542  2333 477776432     1233445555555432           2344679999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHH-HHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEE
Q psy8397          73 PPIMFLDEPTTGLDSNSTNQCVAML-KALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVC  151 (203)
Q Consensus        73 P~vLlLDEPt~gLD~~~~~~i~~~l-~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~  151 (203)
                      |++|||||||+|||+.++..+++.+ +.+. ++.|||++||+++                                    
T Consensus       178 p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~-~~~tIiiisH~~~------------------------------------  220 (282)
T cd03291         178 ADLYLLDSPFGYLDVFTEKEIFESCVCKLM-ANKTRILVTSKME------------------------------------  220 (282)
T ss_pred             CCEEEEECCCccCCHHHHHHHHHHHHHHhh-CCCEEEEEeCChH------------------------------------
Confidence            9999999999999999999999865 5554 4678888888764                                    


Q ss_pred             eecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         152 TIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       152 ~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                             .+ ..||++++|++|++++.|+++++.
T Consensus       221 -------~~-~~~d~i~~l~~G~i~~~g~~~~~~  246 (282)
T cd03291         221 -------HL-KKADKILILHEGSSYFYGTFSELQ  246 (282)
T ss_pred             -------HH-HhCCEEEEEECCEEEEECCHHHHH
Confidence                   23 469999999999999999987765

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=99.86  E-value=1.6e-21  Score=183.23  Aligned_cols=120  Identities=29%  Similarity=0.402  Sum_probs=97.1

Q ss_pred             CCCCHhHHHh-------HHHHHHHHHHHcCCcccc-------cccC----CCCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Q psy8397          21 HRISVDDILD-------TIGLVDDILDTIGLVLSK-------HTLC----GRLSGGQKKRLSIALELIDNPPIMFLDEPT   82 (203)
Q Consensus        21 ~~~~~~~~~~-------~~~~v~~~L~~~~L~~~~-------~~~v----~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt   82 (203)
                      ..-|+.|++.       ..+++.++++.+|+.+..       |+.+    ..||||||||++||||++.+|++++|||||
T Consensus       418 f~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLDEpt  497 (571)
T TIGR02203       418 FNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEAT  497 (571)
T ss_pred             ccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence            3457777643       245677778877765432       3333    359999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHh
Q psy8397          83 TGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFE  162 (203)
Q Consensus        83 ~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~  162 (203)
                      ++||+.+.+.+++.|+++. +++|+|++||+++                                            ...
T Consensus       498 s~LD~~~~~~i~~~L~~~~-~~~tiIiitH~~~--------------------------------------------~~~  532 (571)
T TIGR02203       498 SALDNESERLVQAALERLM-QGRTTLVIAHRLS--------------------------------------------TIE  532 (571)
T ss_pred             ccCCHHHHHHHHHHHHHHh-CCCEEEEEehhhH--------------------------------------------HHH
Confidence            9999999999999999874 4678888888752                                            467


Q ss_pred             hcCEEEEEeCCeEEeeCCcccch
Q psy8397         163 MVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       163 ~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                      .||+|+++++|+++..|+.+++.
T Consensus       533 ~~D~ii~l~~g~i~~~g~~~~l~  555 (571)
T TIGR02203       533 KADRIVVMDDGRIVERGTHNELL  555 (571)
T ss_pred             hCCEEEEEeCCEEEeeCCHHHHH
Confidence            89999999999999999988765

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.86  E-value=3.2e-21  Score=159.01  Aligned_cols=98  Identities=19%  Similarity=0.194  Sum_probs=87.1

Q ss_pred             ccCCCCHhHHHhH-------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHH
Q psy8397          19 YSHRISVDDILDT-------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTN   91 (203)
Q Consensus        19 ~~~~~~~~~~~~~-------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~   91 (203)
                      +....|+.+++..       .+++.++++.+++.+..++++++||||||||++|||||+.+|++++|||||+|||+.++.
T Consensus        81 ~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~  160 (195)
T PRK13541         81 LKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRD  160 (195)
T ss_pred             CCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence            3456788887643       245678889999998899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCCeEEEEecCCCc
Q psy8397          92 QCVAMLKALARGGRTIVCTIHQPSA  116 (203)
Q Consensus        92 ~i~~~l~~l~~~g~tvi~~tH~~~~  116 (203)
                      .+++.|++..++|.|+|++||++++
T Consensus       161 ~l~~~l~~~~~~~~tiii~sh~~~~  185 (195)
T PRK13541        161 LLNNLIVMKANSGGIVLLSSHLESS  185 (195)
T ss_pred             HHHHHHHHHHhCCCEEEEEeCCccc
Confidence            9999998777779999999999874

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.86  E-value=1.9e-21  Score=186.59  Aligned_cols=104  Identities=27%  Similarity=0.462  Sum_probs=91.4

Q ss_pred             HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEe
Q psy8397          32 IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTI  111 (203)
Q Consensus        32 ~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~t  111 (203)
                      ..++.++++.+|+.  .++++++|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++.   .|||++|
T Consensus       136 ~~~~~~~l~~lgl~--~~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~---~tvlivs  210 (635)
T PRK11147        136 ENRINEVLAQLGLD--PDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ---GSIIFIS  210 (635)
T ss_pred             HHHHHHHHHhCCCC--CCCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCC---CEEEEEe
Confidence            35678899999996  388999999999999999999999999999999999999999999999998873   4888888


Q ss_pred             cCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEE-eeCCccc
Q psy8397         112 HQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCV-YKGSSAN  183 (203)
Q Consensus       112 H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~-~~g~~~~  183 (203)
                      |++.                                           .+..+||++++|++|+++ +.|+.+.
T Consensus       211 Hd~~-------------------------------------------~l~~~~d~i~~L~~G~i~~~~g~~~~  240 (635)
T PRK11147        211 HDRS-------------------------------------------FIRNMATRIVDLDRGKLVSYPGNYDQ  240 (635)
T ss_pred             CCHH-------------------------------------------HHHHhcCeEEEEECCEEEEecCCHHH
Confidence            8853                                           467899999999999987 5677654

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.86  E-value=2.6e-21  Score=162.49  Aligned_cols=122  Identities=25%  Similarity=0.362  Sum_probs=103.8

Q ss_pred             cccCCCCHhHHHh------------HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Q psy8397          18 QYSHRISVDDILD------------TIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGL   85 (203)
Q Consensus        18 ~~~~~~~~~~~~~------------~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gL   85 (203)
                      .+.+.+++.|+..            +.+++.+.+..+||.+..++++-+||||||||+.|||||+.+|++|+||||+++|
T Consensus        84 ~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAl  163 (259)
T COG4525          84 ALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGAL  163 (259)
T ss_pred             ccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeecCchhhH
Confidence            3557788888764            3567888999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhc
Q psy8397          86 DSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMV  164 (203)
Q Consensus        86 D~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~  164 (203)
                      |.-.++.+.+.|-.+.+. |+.++++||+++|                                           +.-++
T Consensus       164 Da~tRe~mQelLldlw~~tgk~~lliTH~ieE-------------------------------------------Alfla  200 (259)
T COG4525         164 DALTREQMQELLLDLWQETGKQVLLITHDIEE-------------------------------------------ALFLA  200 (259)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeEEEEeccHHH-------------------------------------------HHhhh
Confidence            999999999999888753 7777777777643                                           45678


Q ss_pred             CEEEEEe--CCeEEeeCCcc
Q psy8397         165 DHLYVIA--EGHCVYKGSSA  182 (203)
Q Consensus       165 d~v~vl~--~G~i~~~g~~~  182 (203)
                      ++++||+  .|+|+..-+++
T Consensus       201 trLvvlsp~pgRvv~~~~~d  220 (259)
T COG4525         201 TRLVVLSPGPGRVVERLPLD  220 (259)
T ss_pred             heeEEecCCCceeeEecCCC
Confidence            9999998  57888766665

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=99.86  E-value=2.3e-21  Score=166.59  Aligned_cols=107  Identities=27%  Similarity=0.451  Sum_probs=96.7

Q ss_pred             HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CCeEE
Q psy8397          31 TIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG--GRTIV  108 (203)
Q Consensus        31 ~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~--g~tvi  108 (203)
                      ..+++..+++.+|+.+.++++..+||-|||||+.|||||+.+|++||||||++|||...+..+.+.+.++...  +.|+|
T Consensus       148 ~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll  227 (257)
T COG1119         148 DLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALL  227 (257)
T ss_pred             HHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEE
Confidence            4567889999999999999999999999999999999999999999999999999999999999999999854  67777


Q ss_pred             EEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCC
Q psy8397         109 CTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGS  180 (203)
Q Consensus       109 ~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~  180 (203)
                      +|||..+                                           ++..-+++++.+++|++++.|.
T Consensus       228 ~VtHh~e-------------------------------------------Ei~~~~th~lll~~g~v~~~g~  256 (257)
T COG1119         228 FVTHHAE-------------------------------------------EIPPCFTHRLLLKEGEVVAQGK  256 (257)
T ss_pred             EEEcchh-------------------------------------------hcccccceEEEeeCCceeeccc
Confidence            7777754                                           3567789999999999999874

>KOG0055|consensus

Probab=99.86  E-value=1.9e-21  Score=194.71  Aligned_cols=121  Identities=32%  Similarity=0.480  Sum_probs=95.2

Q ss_pred             CCCCHhHHHhH------HHHHHHHHHHcC-------CcccccccCC----CCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Q psy8397          21 HRISVDDILDT------IGLVDDILDTIG-------LVLSKHTLCG----RLSGGQKKRLSIALELIDNPPIMFLDEPTT   83 (203)
Q Consensus        21 ~~~~~~~~~~~------~~~v~~~L~~~~-------L~~~~~~~v~----~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~   83 (203)
                      ...|+.|+...      .+++.++.+..+       |.+..++.++    +||||||||++|||||+.+|+||||||||+
T Consensus       439 F~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTS  518 (1228)
T KOG0055|consen  439 FATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATS  518 (1228)
T ss_pred             hcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCccc
Confidence            44677776532      334444443332       3333455554    599999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhh
Q psy8397          84 GLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEM  163 (203)
Q Consensus        84 gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~  163 (203)
                      +||+.+.+.+.+.|.+.. .|+|.|+++|+++                                           .+.+ 
T Consensus       519 aLD~~se~~Vq~ALd~~~-~grTTivVaHRLS-------------------------------------------tIrn-  553 (1228)
T KOG0055|consen  519 ALDAESERVVQEALDKAS-KGRTTIVVAHRLS-------------------------------------------TIRN-  553 (1228)
T ss_pred             ccCHHHHHHHHHHHHHhh-cCCeEEEEeeehh-------------------------------------------hhhc-
Confidence            999999999999998754 5778888888875                                           2455 


Q ss_pred             cCEEEEEeCCeEEeeCCcccchh
Q psy8397         164 VDHLYVIAEGHCVYKGSSANTIP  186 (203)
Q Consensus       164 ~d~v~vl~~G~i~~~g~~~~~~~  186 (203)
                      +|+++++++|+|++.|++++++.
T Consensus       554 aD~I~v~~~G~IvE~G~h~ELi~  576 (1228)
T KOG0055|consen  554 ADKIAVMEEGKIVEQGTHDELIA  576 (1228)
T ss_pred             cCEEEEEECCEEEEecCHHHHHh
Confidence            99999999999999999999874

>PLN03073 ABC transporter F family; Provisional

Probab=99.86  E-value=2.6e-21  Score=188.28  Aligned_cols=109  Identities=27%  Similarity=0.389  Sum_probs=93.6

Q ss_pred             HHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEE
Q psy8397          32 IGLVDDILDTIGLV-LSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCT  110 (203)
Q Consensus        32 ~~~v~~~L~~~~L~-~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~  110 (203)
                      .+++.++++.+|+. ...++++++|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++.  +| |||++
T Consensus       604 ~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~g-tvIiv  680 (718)
T PLN03073        604 EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF--QG-GVLMV  680 (718)
T ss_pred             HHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-EEEEE
Confidence            35678899999997 4679999999999999999999999999999999999999999999988877664  24 88888


Q ss_pred             ecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEE-eeCCcccchh
Q psy8397         111 IHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCV-YKGSSANTIP  186 (203)
Q Consensus       111 tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~-~~g~~~~~~~  186 (203)
                      ||++.                                           .+..+||++++|.+|+++ +.|++++...
T Consensus       681 SHd~~-------------------------------------------~i~~~~drv~~l~~G~i~~~~g~~~~~~~  714 (718)
T PLN03073        681 SHDEH-------------------------------------------LISGSVDELWVVSEGKVTPFHGTFHDYKK  714 (718)
T ss_pred             ECCHH-------------------------------------------HHHHhCCEEEEEECCEEEEeCCCHHHHHH
Confidence            88753                                           467899999999999998 7787765443

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=99.86  E-value=5.9e-21  Score=181.42  Aligned_cols=96  Identities=32%  Similarity=0.461  Sum_probs=83.1

Q ss_pred             cccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhc
Q psy8397          45 VLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDH  124 (203)
Q Consensus        45 ~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~  124 (203)
                      ..........||||||||++|||||+.+|++|+|||||+|||+.+.+.+.+.|+++. +|+|+|++||+++         
T Consensus       462 ~t~~~~~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~-~~~tvI~isH~~~---------  531 (585)
T TIGR01192       462 DTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALR-KNRTTFIIAHRLS---------  531 (585)
T ss_pred             cchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcChH---------
Confidence            333445566899999999999999999999999999999999999999999999874 4788888888864         


Q ss_pred             cccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         125 LGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                                                        .+ ..||+++++++|+++..|+.+++.
T Consensus       532 ----------------------------------~~-~~~d~i~~l~~G~i~~~g~~~~l~  557 (585)
T TIGR01192       532 ----------------------------------TV-RNADLVLFLDQGRLIEKGSFQELI  557 (585)
T ss_pred             ----------------------------------HH-HcCCEEEEEECCEEEEECCHHHHH
Confidence                                              23 569999999999999999988775

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=99.86  E-value=4.1e-21  Score=180.89  Aligned_cols=131  Identities=26%  Similarity=0.289  Sum_probs=100.9

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH------HHHHHHHHHHcCCcccc-------c----ccCCCCCHHHHHHHHHHHHH
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT------IGLVDDILDTIGLVLSK-------H----TLCGRLSGGQKKRLSIALEL   69 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~v~~~L~~~~L~~~~-------~----~~v~~LSgGqrqrl~iA~aL   69 (203)
                      ...|++|...   ...-|+.|++..      .+++.++++.+|+.+..       +    .....||||||||++||||+
T Consensus       415 ~i~~~~Q~~~---lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal  491 (576)
T TIGR02204       415 RMALVPQDPV---LFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAI  491 (576)
T ss_pred             hceEEccCCc---cccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHH
Confidence            3456665322   234577776542      35666777776654322       2    23346999999999999999


Q ss_pred             hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceE
Q psy8397          70 IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTI  149 (203)
Q Consensus        70 ~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tv  149 (203)
                      +.+|++|+|||||++||+.+.+.+++.++++. +++|+|++||+++                                  
T Consensus       492 ~~~~~ililDEpts~lD~~~~~~i~~~l~~~~-~~~t~IiitH~~~----------------------------------  536 (576)
T TIGR02204       492 LKDAPILLLDEATSALDAESEQLVQQALETLM-KGRTTLIIAHRLA----------------------------------  536 (576)
T ss_pred             HhCCCeEEEeCcccccCHHHHHHHHHHHHHHh-CCCEEEEEecchH----------------------------------
Confidence            99999999999999999999999999999875 4788888888753                                  


Q ss_pred             EEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         150 VCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       150 i~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                                ....+|+++++++|+++..|+++++.
T Consensus       537 ----------~~~~~d~vi~l~~g~~~~~g~~~~l~  562 (576)
T TIGR02204       537 ----------TVLKADRIVVMDQGRIVAQGTHAELI  562 (576)
T ss_pred             ----------HHHhCCEEEEEECCEEEeeecHHHHH
Confidence                      35679999999999999999988764

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

Probab=99.86  E-value=1.7e-21  Score=163.53  Aligned_cols=134  Identities=29%  Similarity=0.433  Sum_probs=116.9

Q ss_pred             CceeEEEeeecccccCCCCHhHHHhH--------------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHH
Q psy8397           6 HGTIWCWQIISAQYSHRISVDDILDT--------------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSI   65 (203)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~i   65 (203)
                      +|..+-||.++  .+..+||.|+++.                    +.+++++|...||.+.++...+.||.||||++.|
T Consensus        81 ~GIGRKFQ~Pt--Vfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEI  158 (249)
T COG4674          81 AGIGRKFQKPT--VFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEI  158 (249)
T ss_pred             hccCccccCCe--ehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhh
Confidence            56778888766  4688999998763                    4589999999999999999999999999999999


Q ss_pred             HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhC
Q psy8397          66 ALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARG  145 (203)
Q Consensus        66 A~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (203)
                      +.-++++|++|+||||++|+.-......-++|+.+++                                           
T Consensus       159 GMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~-------------------------------------------  195 (249)
T COG4674         159 GMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG-------------------------------------------  195 (249)
T ss_pred             heeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc-------------------------------------------
Confidence            9999999999999999999999999999999999873                                           


Q ss_pred             CceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         146 GRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       146 g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                      ..+|+++.|||. ++.+++++|.||++|.+.++|+.+++-
T Consensus       196 ~hsilVVEHDM~-Fvr~~A~~VTVlh~G~VL~EGsld~v~  234 (249)
T COG4674         196 KHSILVVEHDMG-FVREIADKVTVLHEGSVLAEGSLDEVQ  234 (249)
T ss_pred             CceEEEEeccHH-HHHHhhheeEEEeccceeecccHHHhh
Confidence            345555555555 589999999999999999999988764

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=99.85  E-value=3.7e-21  Score=155.78  Aligned_cols=60  Identities=43%  Similarity=0.775  Sum_probs=55.9

Q ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q psy8397          55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPS  115 (203)
Q Consensus        55 LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~  115 (203)
                      ||||||||++||++|+.+|++|||||||+|||+.++..+++.|+++.+ ++|+|++||+++
T Consensus        97 LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tii~~sh~~~  156 (171)
T cd03228          97 LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAK-GKTVIVIAHRLS  156 (171)
T ss_pred             hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcC-CCEEEEEecCHH
Confidence            999999999999999999999999999999999999999999999863 688888888864

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.85  E-value=3.9e-21  Score=177.78  Aligned_cols=133  Identities=21%  Similarity=0.333  Sum_probs=119.1

Q ss_pred             CCCCceeEEEeeecccccCCCCHhHHHh---------------HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHH
Q psy8397           3 DSNHGTIWCWQIISAQYSHRISVDDILD---------------TIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIAL   67 (203)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~   67 (203)
                      +..+|...++|-|+  +.+++||-|++-               .++++.++.+.+||.-..+.++.+||-|+||||.|-+
T Consensus        76 A~~~GIGMVhQHF~--Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlK  153 (501)
T COG3845          76 AIRLGIGMVHQHFM--LVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILK  153 (501)
T ss_pred             HHHcCCcEEeeccc--cccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHH
Confidence            34678888898776  468899999762               3567899999999999999999999999999999999


Q ss_pred             HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCc
Q psy8397          68 ELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGR  147 (203)
Q Consensus        68 aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  147 (203)
                      +|..+|++|||||||+-|-|...+++++.++.++++|+|||++||-+.                                
T Consensus       154 aLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~--------------------------------  201 (501)
T COG3845         154 ALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLK--------------------------------  201 (501)
T ss_pred             HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH--------------------------------
Confidence            999999999999999999999999999999999999999999999875                                


Q ss_pred             eEEEeecCchhHHHhhcCEEEEEeCCeEEeeCC
Q psy8397         148 TIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGS  180 (203)
Q Consensus       148 tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~  180 (203)
                                 ++.++|||+.||.+|+++...+
T Consensus       202 -----------Ev~~iaDrvTVLR~Gkvvgt~~  223 (501)
T COG3845         202 -----------EVMAIADRVTVLRRGKVVGTVD  223 (501)
T ss_pred             -----------HHHHhhCeeEEEeCCeEEeeec
Confidence                       4789999999999999876655

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=99.85  E-value=4e-21  Score=186.31  Aligned_cols=129  Identities=25%  Similarity=0.289  Sum_probs=97.7

Q ss_pred             eeEEEeeecccccCCCCHhHHHhH------HHHHHHHHHHcCCccc-------ccccC----CCCCHHHHHHHHHHHHHh
Q psy8397           8 TIWCWQIISAQYSHRISVDDILDT------IGLVDDILDTIGLVLS-------KHTLC----GRLSGGQKKRLSIALELI   70 (203)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~v~~~L~~~~L~~~-------~~~~v----~~LSgGqrqrl~iA~aL~   70 (203)
                      ..+++|..   +...-|+.|++..      .+.+.++++..++.+.       .|+.+    .+||||||||++||||++
T Consensus       557 i~~v~Q~~---~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl  633 (711)
T TIGR00958       557 VALVGQEP---VLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALV  633 (711)
T ss_pred             ceEEecCc---cccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHh
Confidence            45555532   2234688887642      4567777777776543       23333    469999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEE
Q psy8397          71 DNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIV  150 (203)
Q Consensus        71 ~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi  150 (203)
                      .+|++|+|||||++||+.+.+.+.+ ..  ..+++|+|++||+++                                   
T Consensus       634 ~~p~ILILDEpTSaLD~~te~~i~~-~~--~~~~~TvIiItHrl~-----------------------------------  675 (711)
T TIGR00958       634 RKPRVLILDEATSALDAECEQLLQE-SR--SRASRTVLLIAHRLS-----------------------------------  675 (711)
T ss_pred             cCCCEEEEEccccccCHHHHHHHHH-hh--ccCCCeEEEEeccHH-----------------------------------
Confidence            9999999999999999999998888 22  234677777777753                                   


Q ss_pred             EeecCchhHHHhhcCEEEEEeCCeEEeeCCcccchh
Q psy8397         151 CTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTIP  186 (203)
Q Consensus       151 ~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~~  186 (203)
                               ....+|+|++|++|+++..|+++++.+
T Consensus       676 ---------~i~~aD~IivL~~G~ive~Gt~~eL~~  702 (711)
T TIGR00958       676 ---------TVERADQILVLKKGSVVEMGTHKQLME  702 (711)
T ss_pred             ---------HHHhCCEEEEEECCEEEEeeCHHHHHh
Confidence                     346799999999999999999988753

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=99.85  E-value=4.7e-21  Score=184.99  Aligned_cols=130  Identities=25%  Similarity=0.323  Sum_probs=99.8

Q ss_pred             eeEEEeeecccccCCCCHhHHHhH------HHHHHHHHHHcCCcc-----------cccccCCCCCHHHHHHHHHHHHHh
Q psy8397           8 TIWCWQIISAQYSHRISVDDILDT------IGLVDDILDTIGLVL-----------SKHTLCGRLSGGQKKRLSIALELI   70 (203)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~v~~~L~~~~L~~-----------~~~~~v~~LSgGqrqrl~iA~aL~   70 (203)
                      ..+++|..  .+ ..-|+.|++..      .+.+.++++..++.+           .......+||||||||++|||||+
T Consensus       533 i~~v~q~~--~l-f~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall  609 (694)
T TIGR01846       533 MGVVLQEN--VL-FSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALV  609 (694)
T ss_pred             CeEEccCC--ee-hhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHH
Confidence            44555532  22 23477776542      345555566555433           233345579999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEE
Q psy8397          71 DNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIV  150 (203)
Q Consensus        71 ~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi  150 (203)
                      .+|++|+|||||++||+.+.+.+++.|+++. .|+|+|++||+++                                   
T Consensus       610 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~-----------------------------------  653 (694)
T TIGR01846       610 GNPRILIFDEATSALDYESEALIMRNMREIC-RGRTVIIIAHRLS-----------------------------------  653 (694)
T ss_pred             hCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEeCChH-----------------------------------
Confidence            9999999999999999999999999999874 5788888888864                                   


Q ss_pred             EeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         151 CTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       151 ~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                               ....||++++|++|++++.|+.+++.
T Consensus       654 ---------~~~~~d~ii~l~~G~i~~~g~~~~l~  679 (694)
T TIGR01846       654 ---------TVRACDRIIVLEKGQIAESGRHEELL  679 (694)
T ss_pred             ---------HHHhCCEEEEEeCCEEEEeCCHHHHH
Confidence                     23569999999999999999988775

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=99.85  E-value=8.3e-21  Score=179.85  Aligned_cols=131  Identities=27%  Similarity=0.374  Sum_probs=100.0

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH------HHHHHHHHHHcCCccc-------ccccC----CCCCHHHHHHHHHHHHH
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT------IGLVDDILDTIGLVLS-------KHTLC----GRLSGGQKKRLSIALEL   69 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~v~~~L~~~~L~~~-------~~~~v----~~LSgGqrqrl~iA~aL   69 (203)
                      ...|.+|...  + ..-|+.|++..      .+++.++++.+++.+.       .++.+    ..||||||||++|||||
T Consensus       410 ~i~~v~Q~~~--l-f~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARal  486 (588)
T PRK13657        410 NIAVVFQDAG--L-FNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARAL  486 (588)
T ss_pred             heEEEecCcc--c-ccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHH
Confidence            3455555432  2 23577776532      3456666666665432       23333    45999999999999999


Q ss_pred             hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceE
Q psy8397          70 IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTI  149 (203)
Q Consensus        70 ~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tv  149 (203)
                      +.+|++++|||||++||+.+...+++.|+++. +++|+|++||+++                                  
T Consensus       487 l~~~~iliLDEpts~LD~~t~~~i~~~l~~~~-~~~tvIiitHr~~----------------------------------  531 (588)
T PRK13657        487 LKDPPILILDEATSALDVETEAKVKAALDELM-KGRTTFIIAHRLS----------------------------------  531 (588)
T ss_pred             hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-cCCEEEEEEecHH----------------------------------
Confidence            99999999999999999999999999998874 4678888888753                                  


Q ss_pred             EEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         150 VCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       150 i~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                                ..+.+|++++|++|+++..|+.+++.
T Consensus       532 ----------~~~~~D~ii~l~~G~i~~~g~~~~l~  557 (588)
T PRK13657        532 ----------TVRNADRILVFDNGRVVESGSFDELV  557 (588)
T ss_pred             ----------HHHhCCEEEEEECCEEEEeCCHHHHH
Confidence                      35679999999999999999988775

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.85  E-value=7.7e-21  Score=182.37  Aligned_cols=130  Identities=22%  Similarity=0.269  Sum_probs=102.9

Q ss_pred             eeEEEeeecccccCCCCHhHHHhH----------HHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhcCCCEE
Q psy8397           8 TIWCWQIISAQYSHRISVDDILDT----------IGLVDDILDTIGLV-LSKHTLCGRLSGGQKKRLSIALELIDNPPIM   76 (203)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~----------~~~v~~~L~~~~L~-~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vL   76 (203)
                      ..|.+|.. ..+...+|+.+++..          ...+.++++.+++. +..++++++|||||||||+||++|+.+|++|
T Consensus       384 i~y~~q~~-~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lL  462 (635)
T PRK11147        384 VAYFDQHR-AELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLL  462 (635)
T ss_pred             EEEEeCcc-cccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEE
Confidence            34455432 224556788886542          23567789999995 5689999999999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCc
Q psy8397          77 FLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQP  156 (203)
Q Consensus        77 lLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~  156 (203)
                      ||||||+|||+.++..+.+.|+++   +.|||++||++.                                         
T Consensus       463 lLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vSHd~~-----------------------------------------  498 (635)
T PRK11147        463 ILDEPTNDLDVETLELLEELLDSY---QGTVLLVSHDRQ-----------------------------------------  498 (635)
T ss_pred             EEcCCCCCCCHHHHHHHHHHHHhC---CCeEEEEECCHH-----------------------------------------
Confidence            999999999999999999988876   348888888853                                         


Q ss_pred             hhHHHhhcCEEEEEe-CCeEE-eeCCcccc
Q psy8397         157 SATIFEMVDHLYVIA-EGHCV-YKGSSANT  184 (203)
Q Consensus       157 ~~~i~~~~d~v~vl~-~G~i~-~~g~~~~~  184 (203)
                        .+..+||+++++. +|++. +.|+.++.
T Consensus       499 --~~~~~~d~i~~l~~~g~i~~~~g~y~~y  526 (635)
T PRK11147        499 --FVDNTVTECWIFEGNGKIGRYVGGYHDA  526 (635)
T ss_pred             --HHHHhcCEEEEEeCCCeEEEccCCHHHH
Confidence              4678999999998 79875 56665544

>PLN03073 ABC transporter F family; Provisional

Probab=99.85  E-value=6.5e-21  Score=185.51  Aligned_cols=106  Identities=23%  Similarity=0.317  Sum_probs=92.6

Q ss_pred             HHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEE
Q psy8397          32 IGLVDDILDTIGLV-LSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCT  110 (203)
Q Consensus        32 ~~~v~~~L~~~~L~-~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~  110 (203)
                      ..++.++|..+|+. ...++++++|||||||||+||++|+.+|++|||||||++||+.++..+.+.|+++   |.|||++
T Consensus       321 ~~r~~~~L~~lgl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~~tviiv  397 (718)
T PLN03073        321 EARAASILAGLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW---PKTFIVV  397 (718)
T ss_pred             HHHHHHHHHHCCCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc---CCEEEEE
Confidence            45677788888986 5578999999999999999999999999999999999999999999999999886   5788888


Q ss_pred             ecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEE-eeCCccc
Q psy8397         111 IHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCV-YKGSSAN  183 (203)
Q Consensus       111 tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~-~~g~~~~  183 (203)
                      ||+++                                           .+..+||++++|++|++. +.|+.+.
T Consensus       398 sHd~~-------------------------------------------~l~~~~d~i~~l~~g~i~~~~g~~~~  428 (718)
T PLN03073        398 SHARE-------------------------------------------FLNTVVTDILHLHGQKLVTYKGDYDT  428 (718)
T ss_pred             ECCHH-------------------------------------------HHHHhCCEEEEEECCEEEEeCCCHHH
Confidence            88853                                           467889999999999986 6777653

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=99.85  E-value=7.3e-21  Score=189.25  Aligned_cols=109  Identities=27%  Similarity=0.414  Sum_probs=96.0

Q ss_pred             HHHHHHHHHHcCCccc-ccccCCCCCHHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEE
Q psy8397          32 IGLVDDILDTIGLVLS-KHTLCGRLSGGQKKRLSIALELIDNP--PIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIV  108 (203)
Q Consensus        32 ~~~v~~~L~~~~L~~~-~~~~v~~LSgGqrqrl~iA~aL~~~P--~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi  108 (203)
                      .++++ +|+.+||... .++++.+|||||+|||.||++|+.+|  ++++|||||+|||+..+..+++.|+++++.|.|||
T Consensus       467 ~~rl~-~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVI  545 (943)
T PRK00349        467 RERLK-FLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLI  545 (943)
T ss_pred             HHHHH-HhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence            34453 6888999876 79999999999999999999999997  99999999999999999999999999987788888


Q ss_pred             EEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEE------eCCeEEeeCCcc
Q psy8397         109 CTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVI------AEGHCVYKGSSA  182 (203)
Q Consensus       109 ~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl------~~G~i~~~g~~~  182 (203)
                      +++|+++                                           .+ ..||++++|      .+|++++.|+++
T Consensus       546 vVeH~~~-------------------------------------------~i-~~aD~vi~LgpgaG~~~G~iv~~g~~~  581 (943)
T PRK00349        546 VVEHDED-------------------------------------------TI-RAADYIVDIGPGAGVHGGEVVASGTPE  581 (943)
T ss_pred             EEeCCHH-------------------------------------------HH-HhCCEEEEeccccCCCCCEEeeccCHH
Confidence            8888864                                           23 359999999      899999999988


Q ss_pred             cch
Q psy8397         183 NTI  185 (203)
Q Consensus       183 ~~~  185 (203)
                      ++.
T Consensus       582 e~~  584 (943)
T PRK00349        582 EIM  584 (943)
T ss_pred             HHh
Confidence            764

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=99.84  E-value=8.3e-21  Score=157.20  Aligned_cols=70  Identities=26%  Similarity=0.357  Sum_probs=60.6

Q ss_pred             ccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCeEEEEecCCC
Q psy8397          46 LSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVA-MLKALARGGRTIVCTIHQPS  115 (203)
Q Consensus        46 ~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~-~l~~l~~~g~tvi~~tH~~~  115 (203)
                      ...+.++.+||||||||++|||+|+.+|++++|||||+|||+.+++.+++ .++.+.++|.|||++||+++
T Consensus       119 ~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~  189 (204)
T cd03250         119 TEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQ  189 (204)
T ss_pred             ceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHH
Confidence            34566788999999999999999999999999999999999999999998 56666655778888888753

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=99.84  E-value=2e-20  Score=176.72  Aligned_cols=104  Identities=25%  Similarity=0.371  Sum_probs=86.3

Q ss_pred             HHHHHHHHHHHcCCccccccc------CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHH-HHHhC
Q psy8397          31 TIGLVDDILDTIGLVLSKHTL------CGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLK-ALARG  103 (203)
Q Consensus        31 ~~~~v~~~L~~~~L~~~~~~~------v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~-~l~~~  103 (203)
                      ..+++.++++.+++.+..+..      ..+||||||||++||||++.+|++|+|||||++||+.+.+.+.+.+. .+...
T Consensus       441 ~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~  520 (555)
T TIGR01194       441 SLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQ  520 (555)
T ss_pred             hHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhC
Confidence            345678889999987665433      25799999999999999999999999999999999999999998654 56556


Q ss_pred             CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEee
Q psy8397         104 GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYK  178 (203)
Q Consensus       104 g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~  178 (203)
                      |+|+|++||+++                                            ....||+|+++++|+++..
T Consensus       521 ~~tiiiisH~~~--------------------------------------------~~~~~d~i~~l~~G~i~~~  551 (555)
T TIGR01194       521 GKTIIIISHDDQ--------------------------------------------YFELADQIIKLAAGCIVKD  551 (555)
T ss_pred             CCEEEEEeccHH--------------------------------------------HHHhCCEEEEEECCEEEEe
Confidence            788888888753                                            3468999999999998754

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=99.84  E-value=2.8e-20  Score=150.43  Aligned_cols=61  Identities=39%  Similarity=0.648  Sum_probs=56.9

Q ss_pred             cCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCC
Q psy8397          51 LCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQP  114 (203)
Q Consensus        51 ~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~  114 (203)
                      ++.+||||||||++|||||+.+|++++|||||+|||+.+++.+.+.++++   +.|+|++||++
T Consensus        88 ~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsh~~  148 (166)
T cd03223          88 WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL---GITVISVGHRP  148 (166)
T ss_pred             CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh---CCEEEEEeCCh
Confidence            56899999999999999999999999999999999999999999999876   57888888885

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=99.84  E-value=2e-20  Score=154.15  Aligned_cols=88  Identities=26%  Similarity=0.407  Sum_probs=76.3

Q ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CeEEEEecCCCchhhhhhhccccCCCchh
Q psy8397          55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGG-RTIVCTIHQPSATIFEMVDHLGLDSNSTN  133 (203)
Q Consensus        55 LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g-~tvi~~tH~~~~~~~~~~~~~~~~~~~~~  133 (203)
                      ||||||||++|||+|+.+|++++|||||+|||+.+++.+.+.++++.+++ .|+|++||+++                  
T Consensus        72 LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~------------------  133 (177)
T cd03222          72 LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLA------------------  133 (177)
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHH------------------
Confidence            99999999999999999999999999999999999999999999987654 78888888753                  


Q ss_pred             HHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEee--CCcccch
Q psy8397         134 QCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYK--GSSANTI  185 (203)
Q Consensus       134 ~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~--g~~~~~~  185 (203)
                                               .+..+||++++++++-.++.  |.|....
T Consensus       134 -------------------------~~~~~~d~i~~l~~~~~~~~~~~~~~~~~  162 (177)
T cd03222         134 -------------------------VLDYLSDRIHVFEGEPGVYGIASQPKGTR  162 (177)
T ss_pred             -------------------------HHHHhCCEEEEEcCCCccceeccCCcchh
Confidence                                     36778999999998876655  6666544

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.84  E-value=7.1e-20  Score=156.31  Aligned_cols=143  Identities=24%  Similarity=0.373  Sum_probs=121.4

Q ss_pred             CceeEEEeeecccccCCCCHhHHHh---------------HHHHHHHHHHHcCCcc-cccccCC-CCCHHHHHHHHHHHH
Q psy8397           6 HGTIWCWQIISAQYSHRISVDDILD---------------TIGLVDDILDTIGLVL-SKHTLCG-RLSGGQKKRLSIALE   68 (203)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~v~~~L~~~~L~~-~~~~~v~-~LSgGqrqrl~iA~a   68 (203)
                      .|....||.+..  .+..++.+++.               ..+++++.++.+++.+ ++++.++ .+|||||+|..|+..
T Consensus        81 ~GifLafQ~P~e--i~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~  158 (251)
T COG0396          81 AGIFLAFQYPVE--IPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQL  158 (251)
T ss_pred             cCCEEeecCCcc--CCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHH
Confidence            466677776553  36677777553               2456788899999986 7889988 599999999999999


Q ss_pred             HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCce
Q psy8397          69 LIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRT  148 (203)
Q Consensus        69 L~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t  148 (203)
                      ++.+|++.+||||-||||..+-+.+.+.+..++..|.+++++||+-                                  
T Consensus       159 ~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~----------------------------------  204 (251)
T COG0396         159 LLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQ----------------------------------  204 (251)
T ss_pred             HhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHH----------------------------------
Confidence            9999999999999999999999999999999998899999999983                                  


Q ss_pred             EEEeecCchhHHHhhc--CEEEEEeCCeEEeeCCcccchhHHHhcCCCC
Q psy8397         149 IVCTIHQPSATIFEMV--DHLYVIAEGHCVYKGSSANTIPYLQTIGLHC  195 (203)
Q Consensus       149 vi~~~h~~~~~i~~~~--d~v~vl~~G~i~~~g~~~~~~~~~~~~g~~~  195 (203)
                                .+..+.  |++++|.+|+|+.+|.| ++...+++-|+.|
T Consensus       205 ----------rll~~i~pD~vhvl~~GrIv~sG~~-el~~~le~~gy~~  242 (251)
T COG0396         205 ----------RLLDYIKPDKVHVLYDGRIVKSGDP-ELAEELEEKGYDW  242 (251)
T ss_pred             ----------HHHhhcCCCEEEEEECCEEEecCCH-HHHHHHHHhchHH
Confidence                      245554  99999999999999999 8888888888754

>KOG0055|consensus

Probab=99.84  E-value=8e-21  Score=190.27  Aligned_cols=117  Identities=32%  Similarity=0.518  Sum_probs=94.2

Q ss_pred             CCHhHHHhHHHH--HHHHHHHcCCcccccccCC----CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy8397          23 ISVDDILDTIGL--VDDILDTIGLVLSKHTLCG----RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAM   96 (203)
Q Consensus        23 ~~~~~~~~~~~~--v~~~L~~~~L~~~~~~~v~----~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~   96 (203)
                      .|..|+.+.-+.  +.+.+.  +|.+-.|++++    +||||||||++||||++.||+||||||.||+||.++.+.+-+.
T Consensus      1091 vs~~eIi~Aak~ANaH~FI~--sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeA 1168 (1228)
T KOG0055|consen 1091 VSEEEIIEAAKLANAHNFIS--SLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEA 1168 (1228)
T ss_pred             CCHHHHHHHHHHhhhHHHHh--cCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHH
Confidence            555555443222  222332  45666677776    7999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEE
Q psy8397          97 LKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCV  176 (203)
Q Consensus        97 l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~  176 (203)
                      |.+.. .|+|.|++.|.++                                            -..-||.|.|+++|+|+
T Consensus      1169 Ld~a~-~gRT~IvIAHRLS--------------------------------------------TIqnaD~I~Vi~~G~Vv 1203 (1228)
T KOG0055|consen 1169 LDRAM-EGRTTIVIAHRLS--------------------------------------------TIQNADVIAVLKNGKVV 1203 (1228)
T ss_pred             HHHhh-cCCcEEEEecchh--------------------------------------------hhhcCCEEEEEECCEEE
Confidence            99864 5778888888765                                            24679999999999999


Q ss_pred             eeCCcccchh
Q psy8397         177 YKGSSANTIP  186 (203)
Q Consensus       177 ~~g~~~~~~~  186 (203)
                      +.|+.++++.
T Consensus      1204 E~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1204 EQGTHDELLA 1213 (1228)
T ss_pred             ecccHHHHHh
Confidence            9999998875

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=99.84  E-value=2.4e-20  Score=185.22  Aligned_cols=104  Identities=28%  Similarity=0.439  Sum_probs=92.4

Q ss_pred             HHHHcCCccc-ccccCCCCCHHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCC
Q psy8397          38 ILDTIGLVLS-KHTLCGRLSGGQKKRLSIALELIDNP--PIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQP  114 (203)
Q Consensus        38 ~L~~~~L~~~-~~~~v~~LSgGqrqrl~iA~aL~~~P--~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~  114 (203)
                      .+..+||... .++++.+|||||+|||.||++|+.+|  +++||||||+|||+.++..+++.|++++++|.|||+++|++
T Consensus       470 ~L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~  549 (924)
T TIGR00630       470 FLIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDE  549 (924)
T ss_pred             hHhhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCH
Confidence            4677899865 79999999999999999999999986  89999999999999999999999999987788888888875


Q ss_pred             CchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEE------eCCeEEeeCCcccch
Q psy8397         115 SATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVI------AEGHCVYKGSSANTI  185 (203)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl------~~G~i~~~g~~~~~~  185 (203)
                      +                                           .+ ..||++++|      ++|+|++.|+++++.
T Consensus       550 ~-------------------------------------------~i-~~aD~vi~LgpgaG~~~G~Iv~~g~~~el~  582 (924)
T TIGR00630       550 E-------------------------------------------TI-RAADYVIDIGPGAGIHGGEVVASGTPEEIL  582 (924)
T ss_pred             H-------------------------------------------HH-hhCCEEEEecccccCCCCEEeeccCHHHHh
Confidence            3                                           23 489999999      899999999988764

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=99.83  E-value=3.9e-20  Score=174.21  Aligned_cols=104  Identities=27%  Similarity=0.334  Sum_probs=86.4

Q ss_pred             HHHHHHHHHHcCCccccccc-----CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCC
Q psy8397          32 IGLVDDILDTIGLVLSKHTL-----CGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALAR-GGR  105 (203)
Q Consensus        32 ~~~v~~~L~~~~L~~~~~~~-----v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~-~g~  105 (203)
                      .+.+.++++.+++....+..     ..+||||||||++||||++.+|++|+|||||++||+.+.+.+.+.+.+..+ .|+
T Consensus       422 ~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~  501 (547)
T PRK10522        422 PALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGK  501 (547)
T ss_pred             HHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence            45677889999887654322     348999999999999999999999999999999999999999998876543 478


Q ss_pred             eEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeC
Q psy8397         106 TIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKG  179 (203)
Q Consensus       106 tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g  179 (203)
                      |+|++||+++                                            ....||+++++++|+++...
T Consensus       502 tvi~itH~~~--------------------------------------------~~~~~d~i~~l~~G~i~e~~  531 (547)
T PRK10522        502 TIFAISHDDH--------------------------------------------YFIHADRLLEMRNGQLSELT  531 (547)
T ss_pred             EEEEEEechH--------------------------------------------HHHhCCEEEEEECCEEEEec
Confidence            8888888753                                            35679999999999998663

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.83  E-value=1.9e-20  Score=193.44  Aligned_cols=131  Identities=26%  Similarity=0.329  Sum_probs=101.1

Q ss_pred             eeEEEeeecccccCCCCHhHHHhH------HHHHHHHHHHcCCcc-------cccccCC----CCCHHHHHHHHHHHHHh
Q psy8397           8 TIWCWQIISAQYSHRISVDDILDT------IGLVDDILDTIGLVL-------SKHTLCG----RLSGGQKKRLSIALELI   70 (203)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~v~~~L~~~~L~~-------~~~~~v~----~LSgGqrqrl~iA~aL~   70 (203)
                      ..+++|...  + ...|+.|++..      .+.+.++++..++.+       -.++.++    .||||||||++|||||+
T Consensus      1298 i~~V~Qep~--L-F~gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALl 1374 (1466)
T PTZ00265       1298 FSIVSQEPM--L-FNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALL 1374 (1466)
T ss_pred             ccEeCCCCc--c-ccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHh
Confidence            445555322  2 35677776632      345666666665433       3455554    59999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceE
Q psy8397          71 DNPPIMFLDEPTTGLDSNSTNQCVAMLKALA-RGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTI  149 (203)
Q Consensus        71 ~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~-~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tv  149 (203)
                      .+|+|||||||||+||+.+.+.+.+.|.++. .+|+|+|+++|.++                                  
T Consensus      1375 r~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRls---------------------------------- 1420 (1466)
T PTZ00265       1375 REPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIA---------------------------------- 1420 (1466)
T ss_pred             cCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHH----------------------------------
Confidence            9999999999999999999999999999986 35788888888763                                  


Q ss_pred             EEeecCchhHHHhhcCEEEEEeC----CeEE-eeCCcccch
Q psy8397         150 VCTIHQPSATIFEMVDHLYVIAE----GHCV-YKGSSANTI  185 (203)
Q Consensus       150 i~~~h~~~~~i~~~~d~v~vl~~----G~i~-~~g~~~~~~  185 (203)
                                ..+.||+|++|++    |+++ +.|+.++++
T Consensus      1421 ----------ti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl 1451 (1466)
T PTZ00265       1421 ----------SIKRSDKIVVFNNPDRTGSFVQAHGTHEELL 1451 (1466)
T ss_pred             ----------HHHhCCEEEEEeCCCCCCCEEEEecCHHHHH
Confidence                      3567999999999    9955 899988875

>PLN03232 ABC transporter C family member; Provisional

Probab=99.83  E-value=2.9e-20  Score=192.52  Aligned_cols=130  Identities=18%  Similarity=0.146  Sum_probs=101.1

Q ss_pred             eeEEEeeecccccCCCCHhHHHhH-----HHHHHHHHHHcCCccc-------ccccC----CCCCHHHHHHHHHHHHHhc
Q psy8397           8 TIWCWQIISAQYSHRISVDDILDT-----IGLVDDILDTIGLVLS-------KHTLC----GRLSGGQKKRLSIALELID   71 (203)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~L~~~~L~~~-------~~~~v----~~LSgGqrqrl~iA~aL~~   71 (203)
                      ..+.+|..  .++. -|+.|+++.     .+.+.++++..++.+.       .|+.+    .+||||||||++|||||++
T Consensus      1312 i~iVpQdp--~LF~-gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr 1388 (1495)
T PLN03232       1312 LSIIPQSP--VLFS-GTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLR 1388 (1495)
T ss_pred             cEEECCCC--eeeC-ccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHh
Confidence            44555532  2333 377777642     4566777777766443       23333    4799999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEE
Q psy8397          72 NPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVC  151 (203)
Q Consensus        72 ~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~  151 (203)
                      +|+||+|||||++||+.+.+.+.+.|++.. +++|+|+++|.++                                    
T Consensus      1389 ~~~ILILDEATSaLD~~Te~~Iq~~L~~~~-~~~TvI~IAHRl~------------------------------------ 1431 (1495)
T PLN03232       1389 RSKILVLDEATASVDVRTDSLIQRTIREEF-KSCTMLVIAHRLN------------------------------------ 1431 (1495)
T ss_pred             CCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHH------------------------------------
Confidence            999999999999999999999999999864 4788888888864                                    


Q ss_pred             eecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         152 TIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       152 ~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                             . ...||+|++|++|++++.|++++++
T Consensus      1432 -------t-i~~~DrIlVL~~G~ivE~Gt~~eLl 1457 (1495)
T PLN03232       1432 -------T-IIDCDKILVLSSGQVLEYDSPQELL 1457 (1495)
T ss_pred             -------H-HHhCCEEEEEECCEEEEECCHHHHH
Confidence                   2 3459999999999999999999876

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.83  E-value=5.7e-20  Score=152.51  Aligned_cols=113  Identities=28%  Similarity=0.476  Sum_probs=99.6

Q ss_pred             hHHHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeE
Q psy8397          30 DTIGLVDDILDTIGLV-LSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTI  107 (203)
Q Consensus        30 ~~~~~v~~~L~~~~L~-~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tv  107 (203)
                      ++++.+.+||+.+.+. ...|..+..+||||+||+.|||-|+..|+++|+||||.|||...+.++++.++.|..+ |.++
T Consensus       126 ~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~  205 (258)
T COG4107         126 NIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAV  205 (258)
T ss_pred             hHHHHHHHHHHhcccCcccccCcccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceE
Confidence            3566788999999986 4568889999999999999999999999999999999999999999999999999876 7788


Q ss_pred             EEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         108 VCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       108 i~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                      +++|||+.                                           .+.-+++|.++|++|+++..|-.+.+.
T Consensus       206 viVTHDl~-------------------------------------------VarLla~rlmvmk~g~vve~GLTDrvL  240 (258)
T COG4107         206 VIVTHDLA-------------------------------------------VARLLADRLMVMKQGQVVESGLTDRVL  240 (258)
T ss_pred             EEEechhH-------------------------------------------HHHHhhhcceeecCCCEeccccccccc
Confidence            88888753                                           345579999999999999999877664

>KOG0058|consensus

Probab=99.82  E-value=2.2e-20  Score=178.89  Aligned_cols=99  Identities=34%  Similarity=0.549  Sum_probs=86.2

Q ss_pred             CCcccccccCC----CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchh
Q psy8397          43 GLVLSKHTLCG----RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATI  118 (203)
Q Consensus        43 ~L~~~~~~~v~----~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~  118 (203)
                      ++.+..|+.++    +||||||||++|||||+.+|.||||||.||+||.++...+.+.|.++.+ ++|||++.|.++.  
T Consensus       589 ~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~-~rTVlvIAHRLST--  665 (716)
T KOG0058|consen  589 NFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ-GRTVLVIAHRLST--  665 (716)
T ss_pred             hCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc-CCeEEEEehhhhH--
Confidence            35556677776    6999999999999999999999999999999999999999999988764 4888888888752  


Q ss_pred             hhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccchh
Q psy8397         119 FEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTIP  186 (203)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~~  186 (203)
                                                                .+.+|+|.|+++|+++..|+.+++++
T Consensus       666 ------------------------------------------V~~Ad~Ivvi~~G~V~E~G~h~eLl~  691 (716)
T KOG0058|consen  666 ------------------------------------------VRHADQIVVIDKGRVVEMGTHDELLS  691 (716)
T ss_pred             ------------------------------------------hhhccEEEEEcCCeEEecccHHHHhh
Confidence                                                      56799999999999999999888763

>PLN03130 ABC transporter C family member; Provisional

Probab=99.82  E-value=4.5e-20  Score=192.23  Aligned_cols=118  Identities=21%  Similarity=0.204  Sum_probs=96.3

Q ss_pred             CCHhHHHhH-----HHHHHHHHHHcCCccc-------ccccC----CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Q psy8397          23 ISVDDILDT-----IGLVDDILDTIGLVLS-------KHTLC----GRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLD   86 (203)
Q Consensus        23 ~~~~~~~~~-----~~~v~~~L~~~~L~~~-------~~~~v----~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD   86 (203)
                      -|+.++++.     .+.+.++++..++.+.       .|+.+    .+||||||||++|||||+.+|+||+|||||++||
T Consensus      1327 GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD 1406 (1622)
T PLN03130       1327 GTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVD 1406 (1622)
T ss_pred             ccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCC
Confidence            377777642     3556677777665433       34444    4799999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCE
Q psy8397          87 SNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDH  166 (203)
Q Consensus        87 ~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~  166 (203)
                      +.+.+.+.+.|++.. +++|+|+++|.++.                                            ...||+
T Consensus      1407 ~~Te~~Iq~~I~~~~-~~~TvI~IAHRL~t--------------------------------------------I~~~Dr 1441 (1622)
T PLN03130       1407 VRTDALIQKTIREEF-KSCTMLIIAHRLNT--------------------------------------------IIDCDR 1441 (1622)
T ss_pred             HHHHHHHHHHHHHHC-CCCEEEEEeCChHH--------------------------------------------HHhCCE
Confidence            999999999999874 47888888888642                                            345999


Q ss_pred             EEEEeCCeEEeeCCcccch
Q psy8397         167 LYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       167 v~vl~~G~i~~~g~~~~~~  185 (203)
                      |+||++|+|++.|+|++++
T Consensus      1442 IlVLd~G~IvE~Gt~~eLl 1460 (1622)
T PLN03130       1442 ILVLDAGRVVEFDTPENLL 1460 (1622)
T ss_pred             EEEEECCEEEEeCCHHHHH
Confidence            9999999999999999876

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=99.82  E-value=1.1e-19  Score=180.84  Aligned_cols=119  Identities=27%  Similarity=0.410  Sum_probs=102.1

Q ss_pred             CCHhHHHhHH------HHHHHHHHHcCCcc-cccccCCCCCHHHHHHHHHHHHHhcCC---CEEEEeCCCCCCCHHHHHH
Q psy8397          23 ISVDDILDTI------GLVDDILDTIGLVL-SKHTLCGRLSGGQKKRLSIALELIDNP---PIMFLDEPTTGLDSNSTNQ   92 (203)
Q Consensus        23 ~~~~~~~~~~------~~v~~~L~~~~L~~-~~~~~v~~LSgGqrqrl~iA~aL~~~P---~vLlLDEPt~gLD~~~~~~   92 (203)
                      +|+.|.++..      .+..+.|+.+||.. ..++++.+|||||+||+.||++|+.+|   +++||||||+|||+..+..
T Consensus       792 ltv~E~l~~f~~~~~i~~~l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~  871 (943)
T PRK00349        792 MTVEEALEFFEAIPKIARKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRK  871 (943)
T ss_pred             CcHHHHHHHHHhchhhhHHHHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHH
Confidence            6777765442      23456788999986 579999999999999999999999999   9999999999999999999


Q ss_pred             HHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEE--
Q psy8397          93 CVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVI--  170 (203)
Q Consensus        93 i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl--  170 (203)
                      +++.|+++.++|.|||++||+++                                           .+ ..||+++.|  
T Consensus       872 L~~~L~~l~~~G~TVIiitH~~~-------------------------------------------~i-~~aD~ii~Lgp  907 (943)
T PRK00349        872 LLEVLHRLVDKGNTVVVIEHNLD-------------------------------------------VI-KTADWIIDLGP  907 (943)
T ss_pred             HHHHHHHHHhCCCEEEEEecCHH-------------------------------------------HH-HhCCEEEEecC
Confidence            99999999877888888888763                                           23 579999999  


Q ss_pred             ----eCCeEEeeCCcccch
Q psy8397         171 ----AEGHCVYKGSSANTI  185 (203)
Q Consensus       171 ----~~G~i~~~g~~~~~~  185 (203)
                          .+|++++.|+++++.
T Consensus       908 ~~G~~~G~Iv~~Gt~~el~  926 (943)
T PRK00349        908 EGGDGGGEIVATGTPEEVA  926 (943)
T ss_pred             CcCCCCCEEEEeCCHHHHH
Confidence                799999999998775

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.82  E-value=5.2e-20  Score=190.31  Aligned_cols=83  Identities=33%  Similarity=0.414  Sum_probs=70.4

Q ss_pred             HHHHHHHHHcCCccc-----------ccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q psy8397          33 GLVDDILDTIGLVLS-----------KHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALA  101 (203)
Q Consensus        33 ~~v~~~L~~~~L~~~-----------~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~  101 (203)
                      +.+.++++.+++.+.           .+.+..+||||||||++|||||+.+|++|||||||++||+.+...+.+.|+++.
T Consensus       547 ~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~  626 (1466)
T PTZ00265        547 SEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLK  626 (1466)
T ss_pred             HHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHh
Confidence            456677777766543           245567899999999999999999999999999999999999999999999987


Q ss_pred             h-CCCeEEEEecCCC
Q psy8397         102 R-GGRTIVCTIHQPS  115 (203)
Q Consensus       102 ~-~g~tvi~~tH~~~  115 (203)
                      + +|+|+|++||+++
T Consensus       627 ~~~g~TvIiIsHrls  641 (1466)
T PTZ00265        627 GNENRITIIIAHRLS  641 (1466)
T ss_pred             hcCCCEEEEEeCCHH
Confidence            5 4788888888864

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.82  E-value=6.9e-20  Score=190.03  Aligned_cols=119  Identities=22%  Similarity=0.230  Sum_probs=97.2

Q ss_pred             CCHhHHHh-----HHHHHHHHHHHcCCccc-------ccccC----CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Q psy8397          23 ISVDDILD-----TIGLVDDILDTIGLVLS-------KHTLC----GRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLD   86 (203)
Q Consensus        23 ~~~~~~~~-----~~~~v~~~L~~~~L~~~-------~~~~v----~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD   86 (203)
                      -|+.++++     ..+.+.++++..++.+.       .|+.+    .+||||||||++|||||+.+|+||+|||||++||
T Consensus      1374 gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD 1453 (1522)
T TIGR00957      1374 GSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVD 1453 (1522)
T ss_pred             ccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCC
Confidence            37777765     24566777777766432       35555    4599999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCE
Q psy8397          87 SNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDH  166 (203)
Q Consensus        87 ~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~  166 (203)
                      +.+.+.+.+.|++.. +++|+|+++|+++                                            ....||+
T Consensus      1454 ~~Te~~Iq~~l~~~~-~~~TvI~IAHRl~--------------------------------------------ti~~~Dr 1488 (1522)
T TIGR00957      1454 LETDNLIQSTIRTQF-EDCTVLTIAHRLN--------------------------------------------TIMDYTR 1488 (1522)
T ss_pred             HHHHHHHHHHHHHHc-CCCEEEEEecCHH--------------------------------------------HHHhCCE
Confidence            999999999998864 4678888888764                                            2456999


Q ss_pred             EEEEeCCeEEeeCCcccchh
Q psy8397         167 LYVIAEGHCVYKGSSANTIP  186 (203)
Q Consensus       167 v~vl~~G~i~~~g~~~~~~~  186 (203)
                      |+||++|+|++.|+|+++..
T Consensus      1489 IlVld~G~IvE~G~~~eLl~ 1508 (1522)
T TIGR00957      1489 VIVLDKGEVAEFGAPSNLLQ 1508 (1522)
T ss_pred             EEEEECCEEEEECCHHHHHh
Confidence            99999999999999998864

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.82  E-value=7.8e-20  Score=170.71  Aligned_cols=109  Identities=24%  Similarity=0.440  Sum_probs=95.5

Q ss_pred             HHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEE
Q psy8397          32 IGLVDDILDTIGLV-LSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCT  110 (203)
Q Consensus        32 ~~~v~~~L~~~~L~-~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~  110 (203)
                      ++.++++.+.+++. ...+.++++||||.||||.|||.|..+|++|||||||.|.|..++.+++++|++++++|.+||++
T Consensus       378 ~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~i  457 (500)
T COG1129         378 RALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMI  457 (500)
T ss_pred             HHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEE
Confidence            45678888999885 56789999999999999999999999999999999999999999999999999999777777777


Q ss_pred             ecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCccc
Q psy8397         111 IHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSAN  183 (203)
Q Consensus       111 tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~  183 (203)
                      |-++.                                           ++..+||||+||++|+++..-+.++
T Consensus       458 SSElp-------------------------------------------Ell~~~DRIlVm~~Gri~~e~~~~~  487 (500)
T COG1129         458 SSELP-------------------------------------------ELLGLSDRILVMREGRIVGELDREE  487 (500)
T ss_pred             eCChH-------------------------------------------HHHhhCCEEEEEECCEEEEEecccc
Confidence            76653                                           4788999999999999988655544

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=99.82  E-value=6.8e-20  Score=145.32  Aligned_cols=76  Identities=32%  Similarity=0.508  Sum_probs=68.2

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCch
Q psy8397          53 GRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNST  132 (203)
Q Consensus        53 ~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~  132 (203)
                      .+||+||+||++|||||+.+|++++|||||+|||+.++..+.+.++++   +.|+|++||+++                 
T Consensus        69 ~~lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~---~~til~~th~~~-----------------  128 (144)
T cd03221          69 EQLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY---PGTVILVSHDRY-----------------  128 (144)
T ss_pred             ccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc---CCEEEEEECCHH-----------------
Confidence            349999999999999999999999999999999999999999999886   368888888853                 


Q ss_pred             hHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCe
Q psy8397         133 NQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGH  174 (203)
Q Consensus       133 ~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~  174 (203)
                                                .+..+||+++++++|+
T Consensus       129 --------------------------~~~~~~d~v~~l~~g~  144 (144)
T cd03221         129 --------------------------FLDQVATKIIELEDGK  144 (144)
T ss_pred             --------------------------HHHHhCCEEEEEeCCC
Confidence                                      3667899999999885

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=99.81  E-value=2.2e-19  Score=178.49  Aligned_cols=119  Identities=26%  Similarity=0.400  Sum_probs=100.1

Q ss_pred             CCCHhHHHhHH------HHHHHHHHHcCCcc-cccccCCCCCHHHHHHHHHHHHHhc---CCCEEEEeCCCCCCCHHHHH
Q psy8397          22 RISVDDILDTI------GLVDDILDTIGLVL-SKHTLCGRLSGGQKKRLSIALELID---NPPIMFLDEPTTGLDSNSTN   91 (203)
Q Consensus        22 ~~~~~~~~~~~------~~v~~~L~~~~L~~-~~~~~v~~LSgGqrqrl~iA~aL~~---~P~vLlLDEPt~gLD~~~~~   91 (203)
                      .+|++|..+..      .+..++++.+||.. ..++++.+|||||+||+.||++|+.   +|++++|||||+|||+..+.
T Consensus       789 ~~tv~e~~~f~~~~~~i~~~l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~  868 (924)
T TIGR00630       789 DMTVEEAYEFFEAVPSISRKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIK  868 (924)
T ss_pred             CCcHHHHHHHHHhccchhHHHHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHH
Confidence            35666654432      23456888999986 4799999999999999999999997   59999999999999999999


Q ss_pred             HHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEE-
Q psy8397          92 QCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVI-  170 (203)
Q Consensus        92 ~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl-  170 (203)
                      .+++.|+++.++|.|||++||+++                                           .+ ..||++++| 
T Consensus       869 ~L~~~L~~l~~~G~TVIvi~H~~~-------------------------------------------~i-~~aD~ii~Lg  904 (924)
T TIGR00630       869 KLLEVLQRLVDQGNTVVVIEHNLD-------------------------------------------VI-KTADYIIDLG  904 (924)
T ss_pred             HHHHHHHHHHhCCCEEEEEeCCHH-------------------------------------------HH-HhCCEEEEec
Confidence            999999999877888888888753                                           23 569999999 


Q ss_pred             -----eCCeEEeeCCcccc
Q psy8397         171 -----AEGHCVYKGSSANT  184 (203)
Q Consensus       171 -----~~G~i~~~g~~~~~  184 (203)
                           ++|++++.|+++++
T Consensus       905 p~~G~~gG~iv~~G~~~~l  923 (924)
T TIGR00630       905 PEGGDGGGTIVASGTPEEV  923 (924)
T ss_pred             CCccCCCCEEEEeCCHHHh
Confidence                 79999999998764

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=99.81  E-value=1.7e-19  Score=187.27  Aligned_cols=108  Identities=29%  Similarity=0.446  Sum_probs=96.1

Q ss_pred             HHHHHHHHHcCCccc-ccccCCCCCHHHHHHHHHHHHHh---cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEE
Q psy8397          33 GLVDDILDTIGLVLS-KHTLCGRLSGGQKKRLSIALELI---DNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIV  108 (203)
Q Consensus        33 ~~v~~~L~~~~L~~~-~~~~v~~LSgGqrqrl~iA~aL~---~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi  108 (203)
                      +++ ++++.+||.+. .++++.+|||||+||++||++|+   .+|+++||||||+|||+.+++.+++.|++++++|.|||
T Consensus       788 ~~l-~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVI  866 (1809)
T PRK00635        788 EKI-HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVV  866 (1809)
T ss_pred             HHH-HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEE
Confidence            345 47889999886 79999999999999999999998   69999999999999999999999999999987788888


Q ss_pred             EEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEe------CCeEEeeCCcc
Q psy8397         109 CTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIA------EGHCVYKGSSA  182 (203)
Q Consensus       109 ~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~------~G~i~~~g~~~  182 (203)
                      ++||+++                                           .+ ..||++++|.      +|++++.|+++
T Consensus       867 iIsHdl~-------------------------------------------~i-~~aDrVi~L~p~gg~~~G~iv~~Gtpe  902 (1809)
T PRK00635        867 IIEHNMH-------------------------------------------VV-KVADYVLELGPEGGNLGGYLLASCSPE  902 (1809)
T ss_pred             EEeCCHH-------------------------------------------HH-HhCCEEEEEccCCCCCCCEEEEeCCHH
Confidence            8888863                                           34 7899999996      78999999998


Q ss_pred             cch
Q psy8397         183 NTI  185 (203)
Q Consensus       183 ~~~  185 (203)
                      ++.
T Consensus       903 el~  905 (1809)
T PRK00635        903 ELI  905 (1809)
T ss_pred             HHH
Confidence            765

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.81  E-value=1.4e-19  Score=187.40  Aligned_cols=131  Identities=18%  Similarity=0.157  Sum_probs=104.7

Q ss_pred             ceeEEEeeecccccCCCCHhHHHh-----HHHHHHHHHHHcCCccc-------ccccCC----CCCHHHHHHHHHHHHHh
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILD-----TIGLVDDILDTIGLVLS-------KHTLCG----RLSGGQKKRLSIALELI   70 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~v~~~L~~~~L~~~-------~~~~v~----~LSgGqrqrl~iA~aL~   70 (203)
                      ...+.+|..  .++. -|+.++++     ..+.+.++++.+++.+.       .++.++    +||||||||++|||||+
T Consensus      1293 ~is~IpQdp--~LF~-GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALL 1369 (1490)
T TIGR01271      1293 AFGVIPQKV--FIFS-GTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSIL 1369 (1490)
T ss_pred             ceEEEeCCC--ccCc-cCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHh
Confidence            345556543  2333 48888875     35678888998887543       344443    69999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEE
Q psy8397          71 DNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIV  150 (203)
Q Consensus        71 ~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi  150 (203)
                      .+|+||+|||||++||+.+.+.+.+.|++.. +++|||+++|.++                                   
T Consensus      1370 r~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~-~~~TvI~IaHRl~----------------------------------- 1413 (1490)
T TIGR01271      1370 SKAKILLLDEPSAHLDPVTLQIIRKTLKQSF-SNCTVILSEHRVE----------------------------------- 1413 (1490)
T ss_pred             CCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH-----------------------------------
Confidence            9999999999999999999999999999864 4678888888763                                   


Q ss_pred             EeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         151 CTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       151 ~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                               ....||+|++|++|+|+..|+|+++.
T Consensus      1414 ---------ti~~~DrIlvL~~G~ivE~g~p~~Ll 1439 (1490)
T TIGR01271      1414 ---------ALLECQQFLVIEGSSVKQYDSIQKLL 1439 (1490)
T ss_pred             ---------HHHhCCEEEEEECCEEEEeCCHHHHH
Confidence                     23469999999999999999999876

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=99.81  E-value=2.4e-19  Score=172.98  Aligned_cols=103  Identities=21%  Similarity=0.235  Sum_probs=81.8

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH-------------HHHHHHHHHHcCCcccccccC---------CCCCHHHHHHHH
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT-------------IGLVDDILDTIGLVLSKHTLC---------GRLSGGQKKRLS   64 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~v~~~L~~~~L~~~~~~~v---------~~LSgGqrqrl~   64 (203)
                      ...+++|..  .++.. |+.|++..             .+++.++++.+++.+..+++.         ++||||||||++
T Consensus       516 ~i~~v~Q~~--~l~~~-tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~  592 (659)
T TIGR00954       516 KLFYVPQRP--YMTLG-TLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIA  592 (659)
T ss_pred             cEEEECCCC--CCCCc-CHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHH
Confidence            345666543  23333 88876532             356788899999987766643         689999999999


Q ss_pred             HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q psy8397          65 IALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPS  115 (203)
Q Consensus        65 iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~  115 (203)
                      |||||+++|+++||||||+|||+.+.+.+.+.+++   .|.|+|++||+++
T Consensus       593 iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~---~~~tvI~isH~~~  640 (659)
T TIGR00954       593 MARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE---FGITLFSVSHRKS  640 (659)
T ss_pred             HHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH---cCCEEEEEeCchH
Confidence            99999999999999999999999999999988765   3788888888864

>PTZ00243 ABC transporter; Provisional

Probab=99.81  E-value=1.6e-19  Score=187.67  Aligned_cols=130  Identities=19%  Similarity=0.194  Sum_probs=103.1

Q ss_pred             eeEEEeeecccccCCCCHhHHHhH-----HHHHHHHHHHcCCccc-------ccccC----CCCCHHHHHHHHHHHHHhc
Q psy8397           8 TIWCWQIISAQYSHRISVDDILDT-----IGLVDDILDTIGLVLS-------KHTLC----GRLSGGQKKRLSIALELID   71 (203)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~L~~~~L~~~-------~~~~v----~~LSgGqrqrl~iA~aL~~   71 (203)
                      ..+.+|..  .++. -|+.++++.     .+.+.++++..++.+.       .|+.+    .+||||||||++|||||+.
T Consensus      1386 I~iVpQdp--~LF~-gTIreNIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~ 1462 (1560)
T PTZ00243       1386 FSMIPQDP--VLFD-GTVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLK 1462 (1560)
T ss_pred             ceEECCCC--cccc-ccHHHHhCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhc
Confidence            44555432  2333 488887653     4677888888887553       34444    4699999999999999999


Q ss_pred             C-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEE
Q psy8397          72 N-PPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIV  150 (203)
Q Consensus        72 ~-P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi  150 (203)
                      + |+||||||||++||+.+.+.+.+.|++.. +++|+|+++|.++                                   
T Consensus      1463 ~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~-~~~TvI~IAHRl~----------------------------------- 1506 (1560)
T PTZ00243       1463 KGSGFILMDEATANIDPALDRQIQATVMSAF-SAYTVITIAHRLH----------------------------------- 1506 (1560)
T ss_pred             CCCCEEEEeCCCccCCHHHHHHHHHHHHHHC-CCCEEEEEeccHH-----------------------------------
Confidence            6 89999999999999999999999998853 4678888888763                                   


Q ss_pred             EeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         151 CTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       151 ~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                               ....||+|++|++|+|++.|++++++
T Consensus      1507 ---------ti~~~DrIlVLd~G~VvE~Gt~~eLl 1532 (1560)
T PTZ00243       1507 ---------TVAQYDKIIVMDHGAVAEMGSPRELV 1532 (1560)
T ss_pred             ---------HHHhCCEEEEEECCEEEEECCHHHHH
Confidence                     34679999999999999999999886

>KOG0057|consensus

Probab=99.81  E-value=9.8e-20  Score=170.29  Aligned_cols=110  Identities=26%  Similarity=0.419  Sum_probs=89.8

Q ss_pred             HHHHHHHHHHcCCccc-----------ccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy8397          32 IGLVDDILDTIGLVLS-----------KHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKAL  100 (203)
Q Consensus        32 ~~~v~~~L~~~~L~~~-----------~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l  100 (203)
                      .++|.+..+..|+.+.           ...+-..|||||||||+||||++.+|+|++||||||+||..+.+++++.+.. 
T Consensus       454 ~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~-  532 (591)
T KOG0057|consen  454 DEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMD-  532 (591)
T ss_pred             HHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHH-
Confidence            3445555555555332           3344456999999999999999999999999999999999999999999988 


Q ss_pred             HhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCC
Q psy8397         101 ARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGS  180 (203)
Q Consensus       101 ~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~  180 (203)
                      ...|+|+|++-|+++                                            ....||+|+++++|++...|+
T Consensus       533 ~~~~rTvI~IvH~l~--------------------------------------------ll~~~DkI~~l~nG~v~e~gt  568 (591)
T KOG0057|consen  533 VMSGRTVIMIVHRLD--------------------------------------------LLKDFDKIIVLDNGTVKEYGT  568 (591)
T ss_pred             hcCCCeEEEEEecch--------------------------------------------hHhcCCEEEEEECCeeEEecc
Confidence            445677777777753                                            467899999999999999999


Q ss_pred             cccchh
Q psy8397         181 SANTIP  186 (203)
Q Consensus       181 ~~~~~~  186 (203)
                      .++++.
T Consensus       569 h~ell~  574 (591)
T KOG0057|consen  569 HSELLA  574 (591)
T ss_pred             HHHHhh
Confidence            998875

>PLN03232 ABC transporter C family member; Provisional

Probab=99.81  E-value=2.3e-19  Score=185.93  Aligned_cols=131  Identities=24%  Similarity=0.310  Sum_probs=99.9

Q ss_pred             ceeEEEeeecccccCCCCHhHHHh-----HHHHHHHHHHHcCCccc-------ccccCC----CCCHHHHHHHHHHHHHh
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILD-----TIGLVDDILDTIGLVLS-------KHTLCG----RLSGGQKKRLSIALELI   70 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~v~~~L~~~~L~~~-------~~~~v~----~LSgGqrqrl~iA~aL~   70 (203)
                      ...|+.|...  + .+-|+.|++.     ..+++.++++..++.+.       .++.++    +||||||||++||||+.
T Consensus       680 ~Iayv~Q~p~--L-f~gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly  756 (1495)
T PLN03232        680 SVAYVPQVSW--I-FNATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVY  756 (1495)
T ss_pred             cEEEEcCccc--c-ccccHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHh
Confidence            3556665422  2 3468888764     35567777777766432       234444    59999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceE
Q psy8397          71 DNPPIMFLDEPTTGLDSNSTNQCVAM-LKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTI  149 (203)
Q Consensus        71 ~~P~vLlLDEPt~gLD~~~~~~i~~~-l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tv  149 (203)
                      .+|+++||||||++||+.+.+.+++. ++.+ .+|+|+|++||+++                                  
T Consensus       757 ~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~-l~~kT~IlvTH~~~----------------------------------  801 (1495)
T PLN03232        757 SNSDIYIFDDPLSALDAHVAHQVFDSCMKDE-LKGKTRVLVTNQLH----------------------------------  801 (1495)
T ss_pred             cCCCEEEEcCCccccCHHHHHHHHHHHhhhh-hcCCEEEEEECChh----------------------------------
Confidence            99999999999999999999988764 5443 35778888888753                                  


Q ss_pred             EEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         150 VCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       150 i~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                                ....||+|++|++|+++..|+.+++.
T Consensus       802 ----------~l~~aD~Ii~L~~G~i~~~Gt~~eL~  827 (1495)
T PLN03232        802 ----------FLPLMDRIILVSEGMIKEEGTFAELS  827 (1495)
T ss_pred             ----------hHHhCCEEEEEeCCEEEEecCHHHHH
Confidence                      35679999999999999999988775

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.80  E-value=2e-19  Score=143.26  Aligned_cols=61  Identities=44%  Similarity=0.822  Sum_probs=56.8

Q ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q psy8397          55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPS  115 (203)
Q Consensus        55 LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~  115 (203)
                      |||||+||++||++++.+|++++|||||+|||+.++..+++.++++.++++|+|++||+++
T Consensus        81 lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~  141 (157)
T cd00267          81 LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPE  141 (157)
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            9999999999999999999999999999999999999999999998766778888888754

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends

Probab=99.80  E-value=2e-19  Score=150.71  Aligned_cols=77  Identities=21%  Similarity=0.193  Sum_probs=68.0

Q ss_pred             HHHcCCcccccccCCCCCHHHHHHHHHHHHHhc----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEE
Q psy8397          39 LDTIGLVLSKHTLCGRLSGGQKKRLSIALELID----------NPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIV  108 (203)
Q Consensus        39 L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~----------~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi  108 (203)
                      +...++.+..++++.+|||||+||++||++|+.          +|+++||||||+|||+.....+.+.+++++++|.|+|
T Consensus       108 l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii  187 (213)
T cd03279         108 LPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVG  187 (213)
T ss_pred             hhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEE
Confidence            455556778899999999999999999999985          5789999999999999999999999999986688888


Q ss_pred             EEecCCC
Q psy8397         109 CTIHQPS  115 (203)
Q Consensus       109 ~~tH~~~  115 (203)
                      ++||+++
T Consensus       188 ~itH~~~  194 (213)
T cd03279         188 VISHVEE  194 (213)
T ss_pred             EEECchH
Confidence            8888864

They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=99.80  E-value=3.8e-19  Score=152.71  Aligned_cols=133  Identities=22%  Similarity=0.284  Sum_probs=117.6

Q ss_pred             ecccccCCCCHhHHHh------------HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Q psy8397          15 ISAQYSHRISVDDILD------------TIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPT   82 (203)
Q Consensus        15 ~~~~~~~~~~~~~~~~------------~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt   82 (203)
                      +..-|.+.+|..|+..            ..++++++++...|.++.+.|++++|.||+-||++|.|...+|++||+||-.
T Consensus        96 lg~Gf~pelTGreNi~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvl  175 (249)
T COG1134          96 LGAGFDPELTGRENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVL  175 (249)
T ss_pred             cccCCCcccchHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhh
Confidence            3444667788888653            3567888999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHh
Q psy8397          83 TGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFE  162 (203)
Q Consensus        83 ~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~  162 (203)
                      +-.|+.-+++..+.+.++.+++.|||++||+++                                           .+.+
T Consensus       176 avGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~-------------------------------------------~I~~  212 (249)
T COG1134         176 AVGDAAFQEKCLERLNELVEKNKTIVLVSHDLG-------------------------------------------AIKQ  212 (249)
T ss_pred             hcCCHHHHHHHHHHHHHHHHcCCEEEEEECCHH-------------------------------------------HHHH
Confidence            999999999999999999877788888888753                                           5889


Q ss_pred             hcCEEEEEeCCeEEeeCCcccchhHHHh
Q psy8397         163 MVDHLYVIAEGHCVYKGSSANTIPYLQT  190 (203)
Q Consensus       163 ~~d~v~vl~~G~i~~~g~~~~~~~~~~~  190 (203)
                      +||+++++++|++...|++++++++.+.
T Consensus       213 ~Cd~~i~l~~G~i~~~G~~~~vi~~Y~~  240 (249)
T COG1134         213 YCDRAIWLEHGQIRMEGSPEEVIPAYEE  240 (249)
T ss_pred             hcCeeEEEeCCEEEEcCCHHHHHHHHHH
Confidence            9999999999999999999999986554

>KOG0065|consensus

Probab=99.80  E-value=6.6e-20  Score=184.27  Aligned_cols=128  Identities=37%  Similarity=0.678  Sum_probs=115.7

Q ss_pred             HHHHHHHHcCCcccccccCC-----CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeE
Q psy8397          34 LVDDILDTIGLVLSKHTLCG-----RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTI  107 (203)
Q Consensus        34 ~v~~~L~~~~L~~~~~~~v~-----~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tv  107 (203)
                      ..+.+++.+||..++|+.++     ..|||||+||++|-+++.+|+++++||+|.|||..+.-++.+.|+++++- +.|.
T Consensus       235 ~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~t~GLDSsTal~iik~lr~~a~~~~~t~  314 (1391)
T KOG0065|consen  235 MTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEITRGLDSSTAFQIIKALRQLAHITGATA  314 (1391)
T ss_pred             HHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeecccccccHHHHHHHHHHHHHHHhhhcceE
Confidence            45688999999999999887     49999999999999999999999999999999999999999999999853 5555


Q ss_pred             EEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccchhH
Q psy8397         108 VCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTIPY  187 (203)
Q Consensus       108 i~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~~~  187 (203)
                      +++-+++                                          ..++.+++|.|++|.+|+++|.|+.+++.+|
T Consensus       315 ~vsi~Q~------------------------------------------s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~y  352 (1391)
T KOG0065|consen  315 LVSILQP------------------------------------------SPEIYDLFDDVILLSEGYQIYQGPRDEVLPY  352 (1391)
T ss_pred             EEEeccC------------------------------------------ChHHHHhhhheeeeeccceEEeccHHHHHHH
Confidence            5555554                                          4568999999999999999999999999999


Q ss_pred             HHhcCCCCCCCCCCCC
Q psy8397         188 LQTIGLHCPQYHNPAD  203 (203)
Q Consensus       188 ~~~~g~~~p~~~~~~d  203 (203)
                      |+..|+.||+.+++||
T Consensus       353 Fe~~Gf~cP~r~~~AD  368 (1391)
T KOG0065|consen  353 FEDMGFKCPPRKGTAD  368 (1391)
T ss_pred             HHhcCccCCCccCHHH
Confidence            9999999999999987

>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.80  E-value=4.1e-19  Score=150.90  Aligned_cols=129  Identities=21%  Similarity=0.302  Sum_probs=105.9

Q ss_pred             eeEEEeeecccccCCCCHhHHHhH------------------HHHHHHHHHHc--CCcccccccCCCCCHHHHHHHHHHH
Q psy8397           8 TIWCWQIISAQYSHRISVDDILDT------------------IGLVDDILDTI--GLVLSKHTLCGRLSGGQKKRLSIAL   67 (203)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~v~~~L~~~--~L~~~~~~~v~~LSgGqrqrl~iA~   67 (203)
                      ..++||.+.+.-.+.+|++|++..                  ++...+-+..+  ||++..+.+++-|||||||-++++.
T Consensus        82 larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~M  161 (263)
T COG1101          82 LARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLM  161 (263)
T ss_pred             HHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHH
Confidence            456788888877888999998642                  22334455554  5678999999999999999999999


Q ss_pred             HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCC
Q psy8397          68 ELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGG  146 (203)
Q Consensus        68 aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  146 (203)
                      |-++.|++|||||-|++|||.....+++.-.+..++ ..|.+|+||.+                                
T Consensus       162 Atl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm--------------------------------  209 (263)
T COG1101         162 ATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNM--------------------------------  209 (263)
T ss_pred             HhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccH--------------------------------
Confidence            999999999999999999999999999998888754 45666666654                                


Q ss_pred             ceEEEeecCchhHHHhhcCEEEEEeCCeEEeeC
Q psy8397         147 RTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKG  179 (203)
Q Consensus       147 ~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g  179 (203)
                                + .+..+-+|.+++++|+|+.+-
T Consensus       210 ----------~-~Al~yG~RlImLh~G~IvlDv  231 (263)
T COG1101         210 ----------E-DALDYGNRLIMLHSGKIVLDV  231 (263)
T ss_pred             ----------H-HHHhhCCeEEEEeCCeEEEEc
Confidence                      3 468899999999999998764

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=99.79  E-value=4.8e-19  Score=165.66  Aligned_cols=105  Identities=30%  Similarity=0.429  Sum_probs=81.4

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH------HHHHHHHHHHcCCcccc-------ccc----CCCCCHHHHHHHHHHHHH
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT------IGLVDDILDTIGLVLSK-------HTL----CGRLSGGQKKRLSIALEL   69 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~v~~~L~~~~L~~~~-------~~~----v~~LSgGqrqrl~iA~aL   69 (203)
                      ...+++|...  + ...|+.|++..      .+.+.++++..++.+..       |+.    ..+||||||||++|||||
T Consensus       397 ~i~~v~Q~~~--l-f~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal  473 (529)
T TIGR02857       397 QIAWVPQHPF--L-FAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAF  473 (529)
T ss_pred             heEEEcCCCc--c-cCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHH
Confidence            4556665432  3 34688887642      35677788887775432       333    346999999999999999


Q ss_pred             hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q psy8397          70 IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPS  115 (203)
Q Consensus        70 ~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~  115 (203)
                      +.+|++++|||||++||+.+.+.+.+.++++. +|+|+|++||+++
T Consensus       474 ~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~  518 (529)
T TIGR02857       474 LRDAPLLLLDEPTAHLDAETEALVTEALRALA-QGRTVLLVTHRLA  518 (529)
T ss_pred             hcCCCEEEEeCcccccCHHHHHHHHHHHHHhc-CCCEEEEEecCHH
Confidence            99999999999999999999999999999875 5788888888763

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=99.79  E-value=7.3e-19  Score=182.67  Aligned_cols=104  Identities=27%  Similarity=0.461  Sum_probs=92.2

Q ss_pred             HHHHcCCccc-ccccCCCCCHHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCC
Q psy8397          38 ILDTIGLVLS-KHTLCGRLSGGQKKRLSIALELIDNP--PIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQP  114 (203)
Q Consensus        38 ~L~~~~L~~~-~~~~v~~LSgGqrqrl~iA~aL~~~P--~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~  114 (203)
                      .|..+||... .++++.+|||||+|||.||++|+.+|  ++++|||||+|||+..+..+++.|+++++.|.|||++||++
T Consensus       459 ~L~~vGL~~L~ldR~~~tLSGGE~QRV~LAraL~~~p~g~lLILDEPTagLD~~~~~~L~~lL~~L~~~G~TVIvVeHd~  538 (1809)
T PRK00635        459 ILIDLGLPYLTPERALATLSGGEQERTALAKHLGAELIGITYILDEPSIGLHPQDTHKLINVIKKLRDQGNTVLLVEHDE  538 (1809)
T ss_pred             HHHhccccCCCCCCchhhCCHHHHHHHHHHHHHhcCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcH
Confidence            4567899876 79999999999999999999999999  89999999999999999999999999987777888888775


Q ss_pred             CchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEe------CCeEEeeCCcccch
Q psy8397         115 SATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIA------EGHCVYKGSSANTI  185 (203)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~------~G~i~~~g~~~~~~  185 (203)
                      +                                            +.+.||++++|.      +|++++.|+++++.
T Consensus       539 ~--------------------------------------------vi~~aDrVi~L~pGag~~gG~Iv~~G~~~eil  571 (1809)
T PRK00635        539 Q--------------------------------------------MISLADRIIDIGPGAGIFGGEVLFNGSPREFL  571 (1809)
T ss_pred             H--------------------------------------------HHHhCCEEEEEcCCcccCCCEEEEecCHHHHh
Confidence            2                                            457899999996      78999999988763

>PLN03130 ABC transporter C family member; Provisional

Probab=99.79  E-value=7.1e-19  Score=183.33  Aligned_cols=131  Identities=24%  Similarity=0.336  Sum_probs=100.4

Q ss_pred             ceeEEEeeecccccCCCCHhHHHh-----HHHHHHHHHHHcCCccc-------ccccCC----CCCHHHHHHHHHHHHHh
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILD-----TIGLVDDILDTIGLVLS-------KHTLCG----RLSGGQKKRLSIALELI   70 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~v~~~L~~~~L~~~-------~~~~v~----~LSgGqrqrl~iA~aL~   70 (203)
                      ...|+.|.  + +-.+-|+.|++.     ..+++.++++..+|.+.       .++.++    +||||||||++||||+.
T Consensus       680 ~Iayv~Q~--p-~LfngTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly  756 (1622)
T PLN03130        680 TVAYVPQV--S-WIFNATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVY  756 (1622)
T ss_pred             eEEEEcCc--c-ccCCCCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHh
Confidence            34555553  2 224468888764     25677778887776443       234444    59999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceE
Q psy8397          71 DNPPIMFLDEPTTGLDSNSTNQCVA-MLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTI  149 (203)
Q Consensus        71 ~~P~vLlLDEPt~gLD~~~~~~i~~-~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tv  149 (203)
                      .+|+++||||||++||+...+.+++ .++.+. +|+|+|++||+++                                  
T Consensus       757 ~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l-~~kTvIlVTH~l~----------------------------------  801 (1622)
T PLN03130        757 SNSDVYIFDDPLSALDAHVGRQVFDKCIKDEL-RGKTRVLVTNQLH----------------------------------  801 (1622)
T ss_pred             CCCCEEEECCCccccCHHHHHHHHHHHhhHHh-cCCEEEEEECCHh----------------------------------
Confidence            9999999999999999999988865 555543 4778888888753                                  


Q ss_pred             EEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         150 VCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       150 i~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                                ....+|+|++|++|+++..|+.+++.
T Consensus       802 ----------~l~~aD~Ii~L~~G~i~e~Gt~~eL~  827 (1622)
T PLN03130        802 ----------FLSQVDRIILVHEGMIKEEGTYEELS  827 (1622)
T ss_pred             ----------HHHhCCEEEEEeCCEEEEeCCHHHHH
Confidence                      35679999999999999999988775

>PTZ00243 ABC transporter; Provisional

Probab=99.79  E-value=1.5e-18  Score=180.40  Aligned_cols=131  Identities=26%  Similarity=0.304  Sum_probs=97.5

Q ss_pred             eeEEEeeecccccCCCCHhHHHhH-----HHHHHHH---------HHHc--CCcccccccCCCCCHHHHHHHHHHHHHhc
Q psy8397           8 TIWCWQIISAQYSHRISVDDILDT-----IGLVDDI---------LDTI--GLVLSKHTLCGRLSGGQKKRLSIALELID   71 (203)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~---------L~~~--~L~~~~~~~v~~LSgGqrqrl~iA~aL~~   71 (203)
                      ..|++|...  + ...|+.|++..     .+++.++         ++.+  |+....+.+..+||||||||++|||||+.
T Consensus       723 i~yv~Q~~~--l-~~~Tv~enI~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~  799 (1560)
T PTZ00243        723 IAYVPQQAW--I-MNATVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYA  799 (1560)
T ss_pred             EEEEeCCCc--c-CCCcHHHHHHcCChhhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhc
Confidence            456666432  2 24688887532     2223333         3344  55556678889999999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEE
Q psy8397          72 NPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVC  151 (203)
Q Consensus        72 ~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~  151 (203)
                      +|+++||||||++||+...+.+++.+.....+|+|+|++||+++                                    
T Consensus       800 ~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~------------------------------------  843 (1560)
T PTZ00243        800 NRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVH------------------------------------  843 (1560)
T ss_pred             CCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHH------------------------------------
Confidence            99999999999999999999888743222224778888888753                                    


Q ss_pred             eecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         152 TIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       152 ~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                              ....||++++|++|++++.|+++++.
T Consensus       844 --------~~~~ad~ii~l~~G~i~~~G~~~~l~  869 (1560)
T PTZ00243        844 --------VVPRADYVVALGDGRVEFSGSSADFM  869 (1560)
T ss_pred             --------HHHhCCEEEEEECCEEEEecCHHHHH
Confidence                    23579999999999999999988764

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.78  E-value=7e-19  Score=166.17  Aligned_cols=105  Identities=27%  Similarity=0.451  Sum_probs=90.7

Q ss_pred             HHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEec
Q psy8397          33 GLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH  112 (203)
Q Consensus        33 ~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH  112 (203)
                      .++..++..+|+... ++++++||||||.||+||++|+.+|++|||||||++||..+...+-+.|+...  | |+|+|||
T Consensus       133 ~~~~~~L~gLg~~~~-~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~--g-tviiVSH  208 (530)
T COG0488         133 ARAEEALLGLGFPDE-DRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYP--G-TVIVVSH  208 (530)
T ss_pred             HHHHHHHhcCCCCcc-cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCC--C-cEEEEeC
Confidence            567788888999877 99999999999999999999999999999999999999999999999988643  5 7788887


Q ss_pred             CCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeE-EeeCCcccc
Q psy8397         113 QPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHC-VYKGSSANT  184 (203)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i-~~~g~~~~~  184 (203)
                      |-                                           .++-+.|++|+-++.|++ .|.|..+..
T Consensus       209 DR-------------------------------------------~FLd~V~t~I~~ld~g~l~~y~Gny~~~  238 (530)
T COG0488         209 DR-------------------------------------------YFLDNVATHILELDRGKLTPYKGNYSSY  238 (530)
T ss_pred             CH-------------------------------------------HHHHHHhhheEEecCCceeEecCCHHHH
Confidence            72                                           367889999999999985 567766543

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function

Probab=99.78  E-value=1.2e-18  Score=145.09  Aligned_cols=96  Identities=23%  Similarity=0.351  Sum_probs=75.7

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHh----cCCCEEEEeCCC
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELI----DNPPIMFLDEPT   82 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~----~~P~vLlLDEPt   82 (203)
                      ...+.||....+|.    ..    ..+++.++++.   .+..++++.+||||||||++||++++    .+|++++|||||
T Consensus        77 ~v~~vfq~~~~~~~----~~----~~~~~~~~l~~---~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~  145 (197)
T cd03278          77 EVTLTFDNSDGRYS----II----SQGDVSEIIEA---PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVD  145 (197)
T ss_pred             EEEEEEEcCCCcee----EE----ehhhHHHHHhC---CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCc
Confidence            34566765554321    10    13467777777   55678999999999999999999997    467999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHhCCCeEEEEecCC
Q psy8397          83 TGLDSNSTNQCVAMLKALARGGRTIVCTIHQP  114 (203)
Q Consensus        83 ~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~  114 (203)
                      +|||+..+..+++.|+++.+ +.|||++||++
T Consensus       146 ~~LD~~~~~~l~~~l~~~~~-~~tiIiitH~~  176 (197)
T cd03278         146 AALDDANVERFARLLKEFSK-ETQFIVITHRK  176 (197)
T ss_pred             ccCCHHHHHHHHHHHHHhcc-CCEEEEEECCH
Confidence            99999999999999999864 57788888875

Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.78  E-value=2e-18  Score=178.89  Aligned_cols=130  Identities=19%  Similarity=0.218  Sum_probs=96.8

Q ss_pred             eeEEEeeecccccCCCCHhHHHhH-----HHHHHHHHHHcCCcc-----------cccccCCCCCHHHHHHHHHHHHHhc
Q psy8397           8 TIWCWQIISAQYSHRISVDDILDT-----IGLVDDILDTIGLVL-----------SKHTLCGRLSGGQKKRLSIALELID   71 (203)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~L~~~~L~~-----------~~~~~v~~LSgGqrqrl~iA~aL~~   71 (203)
                      ..|++|..  .++. .|+.|++..     ..+..++++..+|.+           ....+..+||||||||++||||++.
T Consensus       489 iayv~Q~~--~l~~-~Ti~eNI~~g~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~  565 (1490)
T TIGR01271       489 ISFSPQTS--WIMP-GTIKDNIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYK  565 (1490)
T ss_pred             EEEEeCCC--ccCC-ccHHHHHHhccccchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHc
Confidence            45666643  2333 488887642     123334444333321           2344567899999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEE
Q psy8397          72 NPPIMFLDEPTTGLDSNSTNQCVAM-LKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIV  150 (203)
Q Consensus        72 ~P~vLlLDEPt~gLD~~~~~~i~~~-l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi  150 (203)
                      +|+++||||||+|||+..++.+++. ++++. +|+|+|++||+++                                   
T Consensus       566 ~~~illLDep~saLD~~~~~~i~~~~l~~~~-~~~tvilvtH~~~-----------------------------------  609 (1490)
T TIGR01271       566 DADLYLLDSPFTHLDVVTEKEIFESCLCKLM-SNKTRILVTSKLE-----------------------------------  609 (1490)
T ss_pred             CCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCCeEEEEeCChH-----------------------------------
Confidence            9999999999999999999999984 56654 4788888888864                                   


Q ss_pred             EeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         151 CTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       151 ~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                              .+ ..||++++|++|+++..|+++++.
T Consensus       610 --------~~-~~ad~ii~l~~g~i~~~g~~~~l~  635 (1490)
T TIGR01271       610 --------HL-KKADKILLLHEGVCYFYGTFSELQ  635 (1490)
T ss_pred             --------HH-HhCCEEEEEECCEEEEEcCHHHHH
Confidence                    23 459999999999999999988775

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.77  E-value=2.4e-18  Score=178.69  Aligned_cols=131  Identities=21%  Similarity=0.242  Sum_probs=97.2

Q ss_pred             eeEEEeeecccccCCCCHhHHHhH-----HHHHHHHHHHcCCc-----------ccccccCCCCCHHHHHHHHHHHHHhc
Q psy8397           8 TIWCWQIISAQYSHRISVDDILDT-----IGLVDDILDTIGLV-----------LSKHTLCGRLSGGQKKRLSIALELID   71 (203)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~L~~~~L~-----------~~~~~~v~~LSgGqrqrl~iA~aL~~   71 (203)
                      ..|++|..  .+ ...|+.|++..     .++.+++++..++.           ...+.+..+||||||||++||||++.
T Consensus       701 i~yv~Q~~--~l-~~~Ti~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~  777 (1522)
T TIGR00957       701 VAYVPQQA--WI-QNDSLRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYS  777 (1522)
T ss_pred             EEEEcCCc--cc-cCCcHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhc
Confidence            44666642  23 34688887642     23344444433322           12356677899999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHHH--hCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceE
Q psy8397          72 NPPIMFLDEPTTGLDSNSTNQCVAMLKALA--RGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTI  149 (203)
Q Consensus        72 ~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~--~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tv  149 (203)
                      +|++++|||||++||+.+.+.+++.+.+..  .+|+|+|++||+++                                  
T Consensus       778 ~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~----------------------------------  823 (1522)
T TIGR00957       778 NADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGIS----------------------------------  823 (1522)
T ss_pred             CCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChh----------------------------------
Confidence            999999999999999999999999887542  24677777777753                                  


Q ss_pred             EEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         150 VCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       150 i~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                                ....||++++|++|+++..|+++++.
T Consensus       824 ----------~l~~~D~ii~l~~G~i~~~g~~~~l~  849 (1522)
T TIGR00957       824 ----------YLPQVDVIIVMSGGKISEMGSYQELL  849 (1522)
T ss_pred             ----------hhhhCCEEEEecCCeEEeeCCHHHHH
Confidence                      23459999999999999999988765

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.77  E-value=2.7e-18  Score=147.01  Aligned_cols=83  Identities=24%  Similarity=0.316  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHHcCCc--------------------ccccccCCCCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCC
Q psy8397          31 TIGLVDDILDTIGLV--------------------LSKHTLCGRLSGGQKKRLSIALELI----DNPPIMFLDEPTTGLD   86 (203)
Q Consensus        31 ~~~~v~~~L~~~~L~--------------------~~~~~~v~~LSgGqrqrl~iA~aL~----~~P~vLlLDEPt~gLD   86 (203)
                      ..+++.++|+.+|+.                    +..+.++.+||||||||++||++|+    .+|++++|||||+|||
T Consensus       123 ~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld  202 (251)
T cd03273         123 QQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALD  202 (251)
T ss_pred             eHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCC
Confidence            346788999999986                    4457889999999999999999998    5789999999999999


Q ss_pred             HHHHHHHHHHHHHHHhCCCeEEEEecCC
Q psy8397          87 SNSTNQCVAMLKALARGGRTIVCTIHQP  114 (203)
Q Consensus        87 ~~~~~~i~~~l~~l~~~g~tvi~~tH~~  114 (203)
                      +..+..+++.|+++. +|.|+|++||+.
T Consensus       203 ~~~~~~~~~~l~~~~-~g~~ii~iSH~~  229 (251)
T cd03273         203 LSHTQNIGRMIKTHF-KGSQFIVVSLKE  229 (251)
T ss_pred             HHHHHHHHHHHHHHc-CCCEEEEEECCH
Confidence            999999999999985 477888888873

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.77  E-value=2.9e-18  Score=143.30  Aligned_cols=133  Identities=26%  Similarity=0.372  Sum_probs=114.8

Q ss_pred             EEEeeecccccCCCCHhHHHh-------------HHHHHHHHHHHcCC-cccccccCCCCCHHHHHHHHHHHHHhcCCCE
Q psy8397          10 WCWQIISAQYSHRISVDDILD-------------TIGLVDDILDTIGL-VLSKHTLCGRLSGGQKKRLSIALELIDNPPI   75 (203)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~-------------~~~~v~~~L~~~~L-~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~v   75 (203)
                      ..||..+..+++++.+..+++             +.+++.+.|..+|| .+.+|-++..||-||||||++||||+.+|++
T Consensus        91 MiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALIL~P~i  170 (267)
T COG4167          91 MIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKI  170 (267)
T ss_pred             eeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHHHhcCCcE
Confidence            457788888888887777653             46778889999998 4788999999999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeec
Q psy8397          76 MFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIH  154 (203)
Q Consensus        76 LlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h  154 (203)
                      ++.||..++||...+..+.+++-+|.++ |.+-|+++..+                                        
T Consensus       171 IIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~Qhl----------------------------------------  210 (267)
T COG4167         171 IIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHI----------------------------------------  210 (267)
T ss_pred             EEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechh----------------------------------------
Confidence            9999999999999999999999999864 66666666554                                        


Q ss_pred             CchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         155 QPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       155 ~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                        . .+..++|.|+||++|++++.|++++++
T Consensus       211 --G-~iKHi~D~viVM~EG~vvE~G~t~~v~  238 (267)
T COG4167         211 --G-MIKHISDQVLVMHEGEVVERGSTADVL  238 (267)
T ss_pred             --h-HhhhhcccEEEEecCceeecCChhhhh
Confidence              2 477899999999999999999999875

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.77  E-value=2.2e-18  Score=142.07  Aligned_cols=101  Identities=24%  Similarity=0.346  Sum_probs=86.1

Q ss_pred             HHHHHHHHHHcCCcc-cccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEE
Q psy8397          32 IGLVDDILDTIGLVL-SKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALAR-GGRTIVC  109 (203)
Q Consensus        32 ~~~v~~~L~~~~L~~-~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~-~g~tvi~  109 (203)
                      +..+.++|..+++.+ ..++++.+||||||||++|+|.|..-|+||+|||||++||+.+.+.+-++|.++.+ +.++++.
T Consensus       110 r~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~vAv~W  189 (223)
T COG4619         110 RAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLW  189 (223)
T ss_pred             hHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHHHHHHHHHhhhhceEEEE
Confidence            456778999999974 57899999999999999999999999999999999999999999999999999874 3445555


Q ss_pred             EecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeE
Q psy8397         110 TIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHC  175 (203)
Q Consensus       110 ~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i  175 (203)
                      +||+                                          ++ +..+++|+++-+..|++
T Consensus       190 iTHd------------------------------------------~d-qa~rha~k~itl~~G~~  212 (223)
T COG4619         190 ITHD------------------------------------------KD-QAIRHADKVITLQPGHA  212 (223)
T ss_pred             EecC------------------------------------------hH-HHhhhhheEEEeccCcc
Confidence            5554                                          44 46789999999999874

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=99.76  E-value=2.5e-18  Score=160.84  Aligned_cols=104  Identities=32%  Similarity=0.412  Sum_probs=81.9

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH------HHHHHHHHHHcCCccc-------ccccCC----CCCHHHHHHHHHHHHH
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT------IGLVDDILDTIGLVLS-------KHTLCG----RLSGGQKKRLSIALEL   69 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~v~~~L~~~~L~~~-------~~~~v~----~LSgGqrqrl~iA~aL   69 (203)
                      ...+++|...  + .+-|+.|++..      .+++.++++..++.+.       .|+.++    +||||||||++|||||
T Consensus       409 ~i~~V~Q~~~--l-F~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARal  485 (529)
T TIGR02868       409 RISVFAQDAH--L-FDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARAL  485 (529)
T ss_pred             heEEEccCcc--c-ccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHH
Confidence            3455555322  2 34588887542      4677788888877543       345544    5999999999999999


Q ss_pred             hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCC
Q psy8397          70 IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQP  114 (203)
Q Consensus        70 ~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~  114 (203)
                      +.+|++|+|||||++||+.+.+.+.+.++++ .+++|+|++||++
T Consensus       486 l~~~~iliLDE~TSaLD~~te~~I~~~l~~~-~~~~TvIiItHrl  529 (529)
T TIGR02868       486 LADAPILLLDEPTEHLDAGTESELLEDLLAA-LSGKTVVVITHHL  529 (529)
T ss_pred             hcCCCEEEEeCCcccCCHHHHHHHHHHHHHh-cCCCEEEEEecCC
Confidence            9999999999999999999999999999976 3589999999974

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.76  E-value=3.1e-18  Score=144.94  Aligned_cols=66  Identities=27%  Similarity=0.429  Sum_probs=58.5

Q ss_pred             cccccCCCCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecC
Q psy8397          47 SKHTLCGRLSGGQKKRLSIALELID----NPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQ  113 (203)
Q Consensus        47 ~~~~~v~~LSgGqrqrl~iA~aL~~----~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~  113 (203)
                      ..+.++..||||||||++||++|+.    +|++++|||||+|||+.+++.+++.|+++.+ ++|||++||.
T Consensus       151 ~~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~-~~~ii~~~h~  220 (243)
T cd03272         151 DEQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD-GAQFITTTFR  220 (243)
T ss_pred             cccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEecC
Confidence            4568899999999999999999973    6899999999999999999999999999864 6777777776

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.76  E-value=2.6e-18  Score=143.23  Aligned_cols=81  Identities=21%  Similarity=0.201  Sum_probs=70.1

Q ss_pred             HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHH----hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC---C
Q psy8397          32 IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALEL----IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG---G  104 (203)
Q Consensus        32 ~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL----~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~---g  104 (203)
                      ...+.++++.   .+..++++++||+|||||++||+++    +.+|++++|||||+|||+..+..+.+.|+++..+   +
T Consensus        90 ~~~~~~~l~~---~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~  166 (198)
T cd03276          90 QDMARSFLTS---NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGR  166 (198)
T ss_pred             HHHHHHHhcc---ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCc
Confidence            3567777776   6678999999999999999999999    5899999999999999999999999999997642   3


Q ss_pred             CeEEEEecCCC
Q psy8397         105 RTIVCTIHQPS  115 (203)
Q Consensus       105 ~tvi~~tH~~~  115 (203)
                      .|||++||+++
T Consensus       167 ~~iii~th~~~  177 (198)
T cd03276         167 QFIFITPQDIS  177 (198)
T ss_pred             EEEEEECCccc
Confidence            57888888865

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.75  E-value=5.1e-18  Score=145.25  Aligned_cols=83  Identities=19%  Similarity=0.327  Sum_probs=69.4

Q ss_pred             HHHHHHHHHHcCCccc----------------------ccccCCCCCHHHHHHHHHHHHHhcC----CCEEEEeCCCCCC
Q psy8397          32 IGLVDDILDTIGLVLS----------------------KHTLCGRLSGGQKKRLSIALELIDN----PPIMFLDEPTTGL   85 (203)
Q Consensus        32 ~~~v~~~L~~~~L~~~----------------------~~~~v~~LSgGqrqrl~iA~aL~~~----P~vLlLDEPt~gL   85 (203)
                      .+.++++++.+|+...                      .++++.+||||||||++||++++.+    |+++||||||+||
T Consensus       111 ~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~L  190 (247)
T cd03275         111 LKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAAL  190 (247)
T ss_pred             HHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccC
Confidence            3456788888888422                      2345689999999999999999875    8999999999999


Q ss_pred             CHHHHHHHHHHHHHHHhCCCeEEEEecCC
Q psy8397          86 DSNSTNQCVAMLKALARGGRTIVCTIHQP  114 (203)
Q Consensus        86 D~~~~~~i~~~l~~l~~~g~tvi~~tH~~  114 (203)
                      |+..+..+.+.|+++.++|.|+|++||++
T Consensus       191 D~~~~~~l~~~i~~~~~~g~~vi~isH~~  219 (247)
T cd03275         191 DNTNVGKVASYIREQAGPNFQFIVISLKE  219 (247)
T ss_pred             CHHHHHHHHHHHHHhccCCcEEEEEECCH
Confidence            99999999999999986677888888773

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=99.75  E-value=4.4e-18  Score=158.30  Aligned_cols=103  Identities=31%  Similarity=0.486  Sum_probs=91.6

Q ss_pred             CCcccccccCC----CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchh
Q psy8397          43 GLVLSKHTLCG----RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATI  118 (203)
Q Consensus        43 ~L~~~~~~~v~----~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~  118 (203)
                      .+.+-.++.++    .||||||||+++||||-.+|.+++||||-++||....+.+.+.|.+++++|.|+|++||.|+   
T Consensus       457 ~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs---  533 (580)
T COG4618         457 RLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPS---  533 (580)
T ss_pred             hCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHH---
Confidence            34555677776    59999999999999999999999999999999999999999999999988888888888764   


Q ss_pred             hhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccchhHHH
Q psy8397         119 FEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTIPYLQ  189 (203)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~~~~~  189 (203)
                                                               +...+|+|++|++|++...|+.+++...+.
T Consensus       534 -----------------------------------------~L~~~Dkilvl~~G~~~~FG~r~eVLa~~~  563 (580)
T COG4618         534 -----------------------------------------ALASVDKILVLQDGRIAAFGPREEVLAKVL  563 (580)
T ss_pred             -----------------------------------------HHhhcceeeeecCChHHhcCCHHHHHHHhc
Confidence                                                     577899999999999999999999886554

>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.73  E-value=7.9e-18  Score=141.78  Aligned_cols=77  Identities=18%  Similarity=0.230  Sum_probs=67.4

Q ss_pred             HHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEe
Q psy8397          36 DDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELID----NPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTI  111 (203)
Q Consensus        36 ~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~----~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~t  111 (203)
                      .++++.+++.+..+++++.||+|||||++||++++.    +|++++|||||+|||+.++..+++.++++. ++.|+|++|
T Consensus       109 ~~~~~~~~L~~~~~~~~~~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~-~~~~~iivs  187 (212)
T cd03274         109 GEVEQIAQMPKKSWKNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERT-KNAQFIVIS  187 (212)
T ss_pred             CcEEEeeccccccccchhhcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEE
Confidence            456678888888899999999999999999999974    579999999999999999999999999985 356677777


Q ss_pred             cC
Q psy8397         112 HQ  113 (203)
Q Consensus       112 H~  113 (203)
                      |+
T Consensus       188 ~~  189 (212)
T cd03274         188 LR  189 (212)
T ss_pred             Cc
Confidence            76

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

Probab=99.72  E-value=1.5e-17  Score=152.12  Aligned_cols=98  Identities=34%  Similarity=0.567  Sum_probs=85.5

Q ss_pred             CcccccccCC----CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhh
Q psy8397          44 LVLSKHTLCG----RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIF  119 (203)
Q Consensus        44 L~~~~~~~v~----~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~  119 (203)
                      +.+..++.++    .|||||||||+|||+++.+|++|+|||.||+||..+.+.+...|++.. .|+|.+++.|.++.   
T Consensus       385 lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~-~~rttlviahrlst---  460 (497)
T COG5265         385 LPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVS-AGRTTLVIAHRLST---  460 (497)
T ss_pred             CchhhhcccchheeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHh-CCCeEEEEeehhhh---
Confidence            4455667777    499999999999999999999999999999999999999999999976 67888888888763   


Q ss_pred             hhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccchh
Q psy8397         120 EMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTIP  186 (203)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~~  186 (203)
                                                               .--+|.|+|+++|+|++.|+.++++.
T Consensus       461 -----------------------------------------i~~adeiivl~~g~i~erg~h~~ll~  486 (497)
T COG5265         461 -----------------------------------------IIDADEIIVLDNGRIVERGTHEELLA  486 (497)
T ss_pred             -----------------------------------------ccCCceEEEeeCCEEEecCcHHHHHH
Confidence                                                     23489999999999999999988764

>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains

Probab=99.70  E-value=5.6e-17  Score=135.65  Aligned_cols=66  Identities=29%  Similarity=0.405  Sum_probs=60.3

Q ss_pred             cccCCCCCHHHHHH------HHHHHHHhcCCCEEEEeCCCCCCCHHHHH-HHHHHHHHHHhC-CCeEEEEecCC
Q psy8397          49 HTLCGRLSGGQKKR------LSIALELIDNPPIMFLDEPTTGLDSNSTN-QCVAMLKALARG-GRTIVCTIHQP  114 (203)
Q Consensus        49 ~~~v~~LSgGqrqr------l~iA~aL~~~P~vLlLDEPt~gLD~~~~~-~i~~~l~~l~~~-g~tvi~~tH~~  114 (203)
                      ++++++||+||+||      ++||++++.+|++++|||||++||+..+. .+.+.|+++.++ |.|||++||++
T Consensus       110 ~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~  183 (204)
T cd03240         110 LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDE  183 (204)
T ss_pred             hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecH
Confidence            77899999999996      78999999999999999999999999999 999999999865 77888888875

The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.

>KOG0054|consensus

Probab=99.68  E-value=2.6e-16  Score=160.49  Aligned_cols=132  Identities=21%  Similarity=0.301  Sum_probs=103.7

Q ss_pred             eeEEEeeecccccCCCCHhHHHh-----HHHHHHHHHHHcCCcccccccC-----------CCCCHHHHHHHHHHHHHhc
Q psy8397           8 TIWCWQIISAQYSHRISVDDILD-----TIGLVDDILDTIGLVLSKHTLC-----------GRLSGGQKKRLSIALELID   71 (203)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~v~~~L~~~~L~~~~~~~v-----------~~LSgGqrqrl~iA~aL~~   71 (203)
                      ..|+.|.  + +-.+-|++|+.-     .++|.+++++...|.+..+..+           -+||||||||++||||+-+
T Consensus       584 iaYv~Q~--p-WI~ngTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~  660 (1381)
T KOG0054|consen  584 VAYVPQQ--P-WIQNGTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQ  660 (1381)
T ss_pred             EEEeccc--c-HhhCCcHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhc
Confidence            4555542  2 446678998763     3677888888887765433332           3699999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEE
Q psy8397          72 NPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVC  151 (203)
Q Consensus        72 ~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~  151 (203)
                      +.+++|||-|.+++|....+.+++-.-...-+++|+|++||+++                                    
T Consensus       661 ~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~------------------------------------  704 (1381)
T KOG0054|consen  661 DADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQ------------------------------------  704 (1381)
T ss_pred             cCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchh------------------------------------
Confidence            99999999999999999999999744433334677777777642                                    


Q ss_pred             eecCchhHHHhhcCEEEEEeCCeEEeeCCcccchh
Q psy8397         152 TIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTIP  186 (203)
Q Consensus       152 ~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~~  186 (203)
                              ....+|.|++|++|+|...|+.+++.+
T Consensus       705 --------~L~~ad~Iivl~~G~I~~~Gty~el~~  731 (1381)
T KOG0054|consen  705 --------FLPHADQIIVLKDGKIVESGTYEELLK  731 (1381)
T ss_pred             --------hhhhCCEEEEecCCeEecccCHHHHHh
Confidence                    467899999999999999999998873

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=99.65  E-value=8.1e-16  Score=128.19  Aligned_cols=95  Identities=28%  Similarity=0.416  Sum_probs=86.9

Q ss_pred             CCCCHhHHHhHH---------HHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHH
Q psy8397          21 HRISVDDILDTI---------GLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTN   91 (203)
Q Consensus        21 ~~~~~~~~~~~~---------~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~   91 (203)
                      ..+|+.|++...         ..+.++++.+||....|.++++||-||||||+|||-++..+++.|||||+++||.....
T Consensus        88 ~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a  167 (209)
T COG4133          88 TELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVA  167 (209)
T ss_pred             chhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecCcccccCHHHHH
Confidence            457888887543         34678999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCCeEEEEecCCC
Q psy8397          92 QCVAMLKALARGGRTIVCTIHQPS  115 (203)
Q Consensus        92 ~i~~~l~~l~~~g~tvi~~tH~~~  115 (203)
                      .+-..+..-..+|--||.+||++.
T Consensus       168 ~l~~l~~~H~~~GGiVllttHq~l  191 (209)
T COG4133         168 LLTALMAAHAAQGGIVLLTTHQPL  191 (209)
T ss_pred             HHHHHHHHHhcCCCEEEEecCCcc
Confidence            999999998888999999999975

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.65  E-value=5.9e-16  Score=146.42  Aligned_cols=115  Identities=24%  Similarity=0.375  Sum_probs=92.3

Q ss_pred             CCCHhHHHhH------HHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHH
Q psy8397          22 RISVDDILDT------IGLVDDILDTIGLV-LSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV   94 (203)
Q Consensus        22 ~~~~~~~~~~------~~~v~~~L~~~~L~-~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~   94 (203)
                      ..|+-|.+..      ...+...|..|++. +...++++.||||||.|+.||+.++.+|.+|||||||+.||..++..+-
T Consensus       400 ~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe  479 (530)
T COG0488         400 DKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALE  479 (530)
T ss_pred             cCcHHHHHHhhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHH
Confidence            3456555432      46788899999996 5668999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCe
Q psy8397          95 AMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGH  174 (203)
Q Consensus        95 ~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~  174 (203)
                      +.|....   -|||+||||.                                          . ++..+|++++.+.+ +
T Consensus       480 ~aL~~f~---Gtvl~VSHDr------------------------------------------~-Fl~~va~~i~~~~~-~  512 (530)
T COG0488         480 EALLDFE---GTVLLVSHDR------------------------------------------Y-FLDRVATRIWLVED-K  512 (530)
T ss_pred             HHHHhCC---CeEEEEeCCH------------------------------------------H-HHHhhcceEEEEcC-c
Confidence            8888765   3666666663                                          2 68889999999998 4


Q ss_pred             E-EeeCCccc
Q psy8397         175 C-VYKGSSAN  183 (203)
Q Consensus       175 i-~~~g~~~~  183 (203)
                      + .+.|..++
T Consensus       513 ~~~~~g~y~~  522 (530)
T COG0488         513 VEEFEGGYED  522 (530)
T ss_pred             eeEcCCCHHH
Confidence            4 34465543

>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.65  E-value=4.4e-16  Score=126.75  Aligned_cols=101  Identities=26%  Similarity=0.320  Sum_probs=87.5

Q ss_pred             cccccCCCCHhHHH-----------hHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q psy8397          16 SAQYSHRISVDDIL-----------DTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTG   84 (203)
Q Consensus        16 ~~~~~~~~~~~~~~-----------~~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~g   84 (203)
                      .+.+++.++|.+++           .+++.+...|++.||....++.+.+||||||.||++-|+|+..|+.++||||++.
T Consensus        85 D~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~  164 (213)
T COG4136          85 DALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSR  164 (213)
T ss_pred             ccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceeeeCCchhH
Confidence            34456667877754           2466688999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHH-HHHHhCCCeEEEEecCCCc
Q psy8397          85 LDSNSTNQCVAML-KALARGGRTIVCTIHQPSA  116 (203)
Q Consensus        85 LD~~~~~~i~~~l-~~l~~~g~tvi~~tH~~~~  116 (203)
                      ||..-+..+.+.+ .++..-|.-+|++|||...
T Consensus       165 LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~D  197 (213)
T COG4136         165 LDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQD  197 (213)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCeEEEeccccc
Confidence            9999999999955 4555669999999999764

>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.65  E-value=4.7e-16  Score=131.18  Aligned_cols=70  Identities=19%  Similarity=0.207  Sum_probs=60.2

Q ss_pred             ccccccCCCCCHHHHHHHHHHHHH----hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-C-CeEEEEecCCC
Q psy8397          46 LSKHTLCGRLSGGQKKRLSIALEL----IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-G-RTIVCTIHQPS  115 (203)
Q Consensus        46 ~~~~~~v~~LSgGqrqrl~iA~aL----~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g-~tvi~~tH~~~  115 (203)
                      +..+.++++|||||||++.+++++    +.+|+++|+||||+|||+..+..+++.++++.++ | .|+|++||++.
T Consensus       118 ~~~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~  193 (213)
T cd03277         118 QLQELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLL  193 (213)
T ss_pred             CccccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhc
Confidence            345778899999999998877554    5899999999999999999999999999998765 5 57888888864

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>KOG0056|consensus

Probab=99.65  E-value=6.4e-16  Score=143.99  Aligned_cols=100  Identities=32%  Similarity=0.512  Sum_probs=86.8

Q ss_pred             cCCcccccccCC----CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCch
Q psy8397          42 IGLVLSKHTLCG----RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSAT  117 (203)
Q Consensus        42 ~~L~~~~~~~v~----~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~  117 (203)
                      +++.+..+++++    .|||||||||+|||+++..|.+++|||.||+||....+.+...|.++.. ++|-|++.|.++. 
T Consensus       658 l~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca-~RTtIVvAHRLST-  735 (790)
T KOG0056|consen  658 LQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCA-NRTTIVVAHRLST-  735 (790)
T ss_pred             hcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc-CCceEEEeeeehh-
Confidence            466677777777    5999999999999999999999999999999999999999999999874 6777777787753 


Q ss_pred             hhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccchh
Q psy8397         118 IFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTIP  186 (203)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~~  186 (203)
                                                                 .--+|.|+++++|+|++.|..++++.
T Consensus       736 -------------------------------------------ivnAD~ILvi~~G~IvErG~HeeLl~  761 (790)
T KOG0056|consen  736 -------------------------------------------IVNADLILVISNGRIVERGRHEELLK  761 (790)
T ss_pred             -------------------------------------------eecccEEEEEeCCeEeecCcHHHHHh
Confidence                                                       23489999999999999999988864

>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

Probab=99.65  E-value=3.7e-17  Score=135.76  Aligned_cols=120  Identities=24%  Similarity=0.444  Sum_probs=104.1

Q ss_pred             HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhc-----CC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q psy8397          31 TIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELID-----NP--PIMFLDEPTTGLDSNSTNQCVAMLKALARG  103 (203)
Q Consensus        31 ~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~-----~P--~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~  103 (203)
                      ....+.++...++|.++..+.+..|||||-|||-+|...++     ||  ++|+||||.++||......+...|.++.+.
T Consensus       102 ~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~  181 (248)
T COG4138         102 RTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQ  181 (248)
T ss_pred             HHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhC
Confidence            34567788899999999999999999999999999988775     33  599999999999999999999999999999


Q ss_pred             CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCccc
Q psy8397         104 GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSAN  183 (203)
Q Consensus       104 g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~  183 (203)
                      |.||||++||++.                                           -.+.+|+++++++|+++..|..++
T Consensus       182 G~~vims~HDLNh-------------------------------------------TLrhA~~~wLL~rG~l~~~G~~~e  218 (248)
T COG4138         182 GLAIVMSSHDLNH-------------------------------------------TLRHAHRAWLLKRGKLLASGRREE  218 (248)
T ss_pred             CcEEEEeccchhh-------------------------------------------HHHHHHHHHHHhcCeEEeecchhh
Confidence            9999999999864                                           367899999999999999999998


Q ss_pred             ch--hHHH-hcCC
Q psy8397         184 TI--PYLQ-TIGL  193 (203)
Q Consensus       184 ~~--~~~~-~~g~  193 (203)
                      ++  +++. .+|.
T Consensus       219 Vlt~~vL~q~fg~  231 (248)
T COG4138         219 VLTPPVLAQAYGM  231 (248)
T ss_pred             hcChHHHHHHhcc
Confidence            86  3453 3443

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.63  E-value=5.8e-16  Score=128.12  Aligned_cols=95  Identities=26%  Similarity=0.389  Sum_probs=84.8

Q ss_pred             HHHHHHHHHHHcCCcc-cccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEE
Q psy8397          31 TIGLVDDILDTIGLVL-SKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVC  109 (203)
Q Consensus        31 ~~~~v~~~L~~~~L~~-~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~  109 (203)
                      .+.++.++|..+++.+ +..-.+.++||||||||.|||.++.+-+||+|||||+.||...++-+.++|++-+..|.++|=
T Consensus       128 a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvG  207 (235)
T COG4778         128 ARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVG  207 (235)
T ss_pred             HHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEE
Confidence            3567889999999964 567789999999999999999999999999999999999999999999999999889999999


Q ss_pred             EecCCCchhhhhhhccc
Q psy8397         110 TIHQPSATIFEMVDHLG  126 (203)
Q Consensus       110 ~tH~~~~~~~~~~~~~~  126 (203)
                      +=|| ++.-.++|||+.
T Consensus       208 IFHD-eevre~vadR~~  223 (235)
T COG4778         208 IFHD-EEVREAVADRLL  223 (235)
T ss_pred             eecc-HHHHHHHhhhee
Confidence            9999 455666777763

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.62  E-value=1.3e-15  Score=140.72  Aligned_cols=91  Identities=26%  Similarity=0.519  Sum_probs=82.5

Q ss_pred             CHhHHHhHH---HHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy8397          24 SVDDILDTI---GLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKAL  100 (203)
Q Consensus        24 ~~~~~~~~~---~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l  100 (203)
                      +|.|++...   ...+++.+.++|.+..++.+++||||+-||++||.+++.+.+++++||||+-||...|-...+.++++
T Consensus       180 ~v~elLk~~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel  259 (591)
T COG1245         180 KVGELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIREL  259 (591)
T ss_pred             hHHHHHHhhhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHH
Confidence            666665432   46789999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCCeEEEEecCC
Q psy8397         101 ARGGRTIVCTIHQP  114 (203)
Q Consensus       101 ~~~g~tvi~~tH~~  114 (203)
                      .+.+++|+++.|||
T Consensus       260 ~~~~k~ViVVEHDL  273 (591)
T COG1245         260 AEDGKYVIVVEHDL  273 (591)
T ss_pred             hccCCeEEEEechH
Confidence            97788888888886

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.62  E-value=1.5e-15  Score=140.95  Aligned_cols=112  Identities=23%  Similarity=0.361  Sum_probs=101.1

Q ss_pred             hHHHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEE
Q psy8397          30 DTIGLVDDILDTIGLV-LSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIV  108 (203)
Q Consensus        30 ~~~~~v~~~L~~~~L~-~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi  108 (203)
                      ..++.+.++++.|++. .....++.+||||++||+-+||.|..+|++|+..+||-|||..+...+.+.|.+++++|++|+
T Consensus       378 ~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVL  457 (501)
T COG3845         378 AIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVL  457 (501)
T ss_pred             HHHHHHHHHHHHcCccCCCCCcchhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEE
Confidence            3466788999999986 556788999999999999999999999999999999999999999999999999998888888


Q ss_pred             EEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccc
Q psy8397         109 CTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANT  184 (203)
Q Consensus       109 ~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~  184 (203)
                      ++|-+++                                           ++.++||||.||.+|+++...++++.
T Consensus       458 LiS~dLD-------------------------------------------Eil~lsDrIaVi~~Gri~~~~~~~~~  490 (501)
T COG3845         458 LISEDLD-------------------------------------------EILELSDRIAVIYEGRIVGIVPPEEA  490 (501)
T ss_pred             EEehhHH-------------------------------------------HHHHhhheeeeeeCCceecccccccC
Confidence            8888765                                           48899999999999999998888764

>KOG0927|consensus

Probab=99.62  E-value=1.1e-15  Score=143.06  Aligned_cols=109  Identities=22%  Similarity=0.330  Sum_probs=90.5

Q ss_pred             HHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEE
Q psy8397          32 IGLVDDILDTIGLV-LSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCT  110 (203)
Q Consensus        32 ~~~v~~~L~~~~L~-~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~  110 (203)
                      ..++..+|..+|.. ...++++.+||||+|.|++|||+|..+|++|+|||||+|||+.+...+-+.|.+..+-  ++|++
T Consensus       198 ~~k~~~il~glgf~~~m~~k~~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~--~lVi~  275 (614)
T KOG0927|consen  198 EAKAAKILHGLGFLSEMQDKKVKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRI--ILVIV  275 (614)
T ss_pred             HHHHHHHHHhcCCCHhHHHHHhhccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCc--eEEEE
Confidence            34566677777764 5678999999999999999999999999999999999999999999988888775421  78888


Q ss_pred             ecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCe-EEeeCCcccch
Q psy8397         111 IHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGH-CVYKGSSANTI  185 (203)
Q Consensus       111 tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~-i~~~g~~~~~~  185 (203)
                      +|+-+                                           ++-.+|.+|+-+.+++ +.|.|+.+...
T Consensus       276 sh~QD-------------------------------------------fln~vCT~Ii~l~~kkl~~y~Gnydqy~  308 (614)
T KOG0927|consen  276 SHSQD-------------------------------------------FLNGVCTNIIHLDNKKLIYYEGNYDQYV  308 (614)
T ss_pred             ecchh-------------------------------------------hhhhHhhhhheecccceeeecCCHHHHh
Confidence            88732                                           5778999999999998 67788776543

>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms

Probab=99.62  E-value=3.6e-15  Score=122.55  Aligned_cols=60  Identities=27%  Similarity=0.426  Sum_probs=55.2

Q ss_pred             CCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCC
Q psy8397          55 LSGGQKKRLSIALELI----DNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQP  114 (203)
Q Consensus        55 LSgGqrqrl~iA~aL~----~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~  114 (203)
                      ||||||||++||++++    .+|+++++|||+++||+..+..+.+.++++.++|.|+|++||++
T Consensus        95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~  158 (178)
T cd03239          95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKK  158 (178)
T ss_pred             CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCH
Confidence            9999999999999996    69999999999999999999999999999886677888888875

SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.

>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]

Probab=99.60  E-value=7e-15  Score=142.86  Aligned_cols=120  Identities=26%  Similarity=0.418  Sum_probs=100.1

Q ss_pred             CCHhHHHhH------HHHHHHHHHHcCCcc-cccccCCCCCHHHHHHHHHHHHHhcCC---CEEEEeCCCCCCCHHHHHH
Q psy8397          23 ISVDDILDT------IGLVDDILDTIGLVL-SKHTLCGRLSGGQKKRLSIALELIDNP---PIMFLDEPTTGLDSNSTNQ   92 (203)
Q Consensus        23 ~~~~~~~~~------~~~v~~~L~~~~L~~-~~~~~v~~LSgGqrqrl~iA~aL~~~P---~vLlLDEPt~gLD~~~~~~   92 (203)
                      |||+|-.+.      ..+.-+.|..+||.. .+.++..+|||||.||+-||..|....   -+++|||||+||-....++
T Consensus       784 MTveEA~~FF~~~p~I~rkLqtL~dVGLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~k  863 (935)
T COG0178         784 MTVEEALEFFEAIPKIARKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKK  863 (935)
T ss_pred             ccHHHHHHHHhcchHHHHHHHHHHHcCcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHH
Confidence            677765443      223445677789975 468899999999999999999999887   8999999999999999999


Q ss_pred             HHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEE--
Q psy8397          93 CVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVI--  170 (203)
Q Consensus        93 i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl--  170 (203)
                      +++.|.+|..+|.|||++.|.|+                                            +.+.||.|+=|  
T Consensus       864 Ll~VL~rLvd~GnTViVIEHNLd--------------------------------------------VIk~AD~IIDLGP  899 (935)
T COG0178         864 LLEVLHRLVDKGNTVIVIEHNLD--------------------------------------------VIKTADWIIDLGP  899 (935)
T ss_pred             HHHHHHHHHhCCCEEEEEecccc--------------------------------------------eEeecCEEEEcCC
Confidence            99999999988888888888864                                            56789998866  


Q ss_pred             ----eCCeEEeeCCcccchh
Q psy8397         171 ----AEGHCVYKGSSANTIP  186 (203)
Q Consensus       171 ----~~G~i~~~g~~~~~~~  186 (203)
                          ..|+|++.|+|+++..
T Consensus       900 eGG~~GG~iva~GTPeeva~  919 (935)
T COG0178         900 EGGDGGGEIVASGTPEEVAK  919 (935)
T ss_pred             CCCCCCceEEEecCHHHHHh
Confidence                4588999999998864

>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.60  E-value=7.1e-16  Score=131.51  Aligned_cols=112  Identities=21%  Similarity=0.345  Sum_probs=99.2

Q ss_pred             HHHHHHHHHHHcCCccc---ccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCe
Q psy8397          31 TIGLVDDILDTIGLVLS---KHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRT  106 (203)
Q Consensus        31 ~~~~v~~~L~~~~L~~~---~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~t  106 (203)
                      .++++-++|..+|+.+.   +..++.+|.-|+-|+|+||.|++.+|++|+.||||+.++|.++.+++++|..++++ |+|
T Consensus       132 rKrrAIeLLHrVGIKdHkDIM~SYP~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~Tt  211 (330)
T COG4170         132 RKRRAIELLHRVGIKDHKDIMRSYPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTT  211 (330)
T ss_pred             hHHHHHHHHHHhccccHHHHHHhCcchhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCce
Confidence            36678899999999754   56789999999999999999999999999999999999999999999999999864 778


Q ss_pred             EEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         107 IVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       107 vi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                      |++++||+.                                           .+.+.||++-|+.-|+-+.+++.++++
T Consensus       212 ILL~s~Dl~-------------------------------------------~is~W~d~i~VlYCGQ~~ESa~~e~l~  247 (330)
T COG4170         212 ILLISHDLQ-------------------------------------------MISQWADKINVLYCGQTVESAPSEELV  247 (330)
T ss_pred             EEEEcccHH-------------------------------------------HHHHHhhheEEEEecccccccchhHHh
Confidence            888888753                                           477899999999999999888877765

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.59  E-value=8.2e-15  Score=135.54  Aligned_cols=105  Identities=23%  Similarity=0.284  Sum_probs=87.8

Q ss_pred             eeEEEeeecccccCCCCHhHHHhHHHH--------HHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy8397           8 TIWCWQIISAQYSHRISVDDILDTIGL--------VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLD   79 (203)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLD   79 (203)
                      ..|-+|.+++.  ...||++++.....        -.++++-++|.+..++++.+|||||.|||+||.+|..++++.+||
T Consensus       403 vSyKPQyI~~~--~~gtV~~~l~~~~~~~~~~s~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllD  480 (591)
T COG1245         403 VSYKPQYISPD--YDGTVEDLLRSAIRSAFGSSYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLD  480 (591)
T ss_pred             EeecceeecCC--CCCcHHHHHHHhhhhhcccchhHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEec
Confidence            34566777764  45788887654332        357788899999999999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCC
Q psy8397          80 EPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQP  114 (203)
Q Consensus        80 EPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~  114 (203)
                      ||++.||...|..+.+.|++...+ ++|.+++.||+
T Consensus       481 EPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi  516 (591)
T COG1245         481 EPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDI  516 (591)
T ss_pred             CchhhccHHHHHHHHHHHHHHHhhcCceEEEEecce
Confidence            999999999999999999998854 66777777764

>TIGR00618 sbcc exonuclease SbcC

Probab=99.59  E-value=5.7e-15  Score=148.85  Aligned_cols=71  Identities=27%  Similarity=0.366  Sum_probs=63.6

Q ss_pred             cccccccCCCCCHHHHHHHHHHHHHhc----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCC
Q psy8397          45 VLSKHTLCGRLSGGQKKRLSIALELID----------NPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQP  114 (203)
Q Consensus        45 ~~~~~~~v~~LSgGqrqrl~iA~aL~~----------~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~  114 (203)
                      ....++++++|||||++|++||++|+.          +|++|||||||+|||+.+...+++.|+.+...|++|+||||++
T Consensus       941 ~~~~~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~ 1020 (1042)
T TIGR00618       941 YTGSVRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVP 1020 (1042)
T ss_pred             CCCCcCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcH
Confidence            345577899999999999999999986          7999999999999999999999999999987788888888875


Q ss_pred             C
Q psy8397         115 S  115 (203)
Q Consensus       115 ~  115 (203)
                      +
T Consensus      1021 ~ 1021 (1042)
T TIGR00618      1021 E 1021 (1042)
T ss_pred             H
Confidence            3

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules

Probab=99.58  E-value=5e-15  Score=128.92  Aligned_cols=60  Identities=33%  Similarity=0.547  Sum_probs=53.0

Q ss_pred             CCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCC
Q psy8397          54 RLSGGQKKRLSIALELID----NPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQP  114 (203)
Q Consensus        54 ~LSgGqrqrl~iA~aL~~----~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~  114 (203)
                      .|||||+||+++|++++.    +|++++|||||++||+..+..+.+.++++.+ +.|+|++||++
T Consensus       170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~-~~tii~isH~~  233 (276)
T cd03241         170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR-SHQVLCITHLP  233 (276)
T ss_pred             hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEechH
Confidence            499999999999987654    9999999999999999999999999999863 57777777774

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=99.58  E-value=5e-15  Score=122.94  Aligned_cols=97  Identities=20%  Similarity=0.199  Sum_probs=79.5

Q ss_pred             HHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhCCCeEEEEecCCCc
Q psy8397          38 ILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV-AMLKALARGGRTIVCTIHQPSA  116 (203)
Q Consensus        38 ~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~-~~l~~l~~~g~tvi~~tH~~~~  116 (203)
                      .+..++..+..+...+++|+||||++.++++ +.+|+++|+|||++|+|+..+..++ ..++.+.+.|.|+|++||+.  
T Consensus        75 ~~~~lg~~~~l~~~~s~fs~g~~~~~~i~~~-~~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~--  151 (200)
T cd03280          75 IFADIGDEQSIEQSLSTFSSHMKNIARILQH-ADPDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIATTHYG--  151 (200)
T ss_pred             EEEecCchhhhhcCcchHHHHHHHHHHHHHh-CCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCHH--
Confidence            3445555566677788999999999999987 4899999999999999999999996 47888876677888888862  


Q ss_pred             hhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeC
Q psy8397         117 TIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKG  179 (203)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g  179 (203)
                                                                .+..+||++.++.+|++.+++
T Consensus       152 ------------------------------------------~l~~~~d~~~~l~~g~l~~~~  172 (200)
T cd03280         152 ------------------------------------------ELKAYAYKREGVENASMEFDP  172 (200)
T ss_pred             ------------------------------------------HHHHHHhcCCCeEEEEEEEec
Confidence                                                      256788999999999988774

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>KOG0054|consensus

Probab=99.57  E-value=1.3e-14  Score=148.28  Aligned_cols=89  Identities=22%  Similarity=0.319  Sum_probs=77.6

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCch
Q psy8397          53 GRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNST  132 (203)
Q Consensus        53 ~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~  132 (203)
                      .++|-||||.++|||||+++++||+|||+|+++|+.+-..+-+.|++-- .++|||.+.|.+..                
T Consensus      1274 ~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F-~dcTVltIAHRl~T---------------- 1336 (1381)
T KOG0054|consen 1274 ENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEF-KDCTVLTIAHRLNT---------------- 1336 (1381)
T ss_pred             ccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHh-cCCeEEEEeeccch----------------
Confidence            4699999999999999999999999999999999999999999998832 36777777777642                


Q ss_pred             hHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccchh
Q psy8397         133 NQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTIP  186 (203)
Q Consensus       133 ~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~~  186 (203)
                                                 + --||||+||++|+|++.|+|.++..
T Consensus      1337 ---------------------------V-md~DrVlVld~G~v~EfdsP~~Ll~ 1362 (1381)
T KOG0054|consen 1337 ---------------------------V-MDSDRVLVLDAGRVVEFDSPAELLS 1362 (1381)
T ss_pred             ---------------------------h-hhcCeEEEeeCCeEeecCChHHHHh
Confidence                                       2 3499999999999999999998873

>KOG0062|consensus

Probab=99.56  E-value=1.2e-14  Score=135.59  Aligned_cols=105  Identities=29%  Similarity=0.405  Sum_probs=86.5

Q ss_pred             HHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEE
Q psy8397          32 IGLVDDILDTIGLV-LSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCT  110 (203)
Q Consensus        32 ~~~v~~~L~~~~L~-~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~  110 (203)
                      .+.+++-+..|||. +.+.+.+.+||||||-||+||.+...+|-+|+|||||+.||..+...+.+.|+.+.   -.||++
T Consensus       459 ~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F~---GGVv~V  535 (582)
T KOG0062|consen  459 EEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNFN---GGVVLV  535 (582)
T ss_pred             HHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhcC---CcEEEE
Confidence            45677889999996 66777799999999999999999999999999999999999988888887777665   245566


Q ss_pred             ecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEE-eeCCcc
Q psy8397         111 IHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCV-YKGSSA  182 (203)
Q Consensus       111 tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~-~~g~~~  182 (203)
                      ||+                                          .+ ++...|+.+++..+|++. ..|...
T Consensus       536 SHd------------------------------------------~~-fi~~~c~E~Wvve~g~vt~ieg~~~  565 (582)
T KOG0062|consen  536 SHD------------------------------------------EE-FISSLCKELWVVEDGKVTPIEGGID  565 (582)
T ss_pred             ECc------------------------------------------HH-HHhhcCceeEEEcCCcEEeeeccHH
Confidence            665                                          33 588899999999999975 345443

>PHA02562 46 endonuclease subunit; Provisional

Probab=99.55  E-value=1.3e-14  Score=136.30  Aligned_cols=64  Identities=23%  Similarity=0.384  Sum_probs=57.9

Q ss_pred             cccCCCCCHHHHHHHHHHHHHh----------cCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHhCCCeEEEEecCC
Q psy8397          49 HTLCGRLSGGQKKRLSIALELI----------DNPPIMFLDEPT-TGLDSNSTNQCVAMLKALARGGRTIVCTIHQP  114 (203)
Q Consensus        49 ~~~v~~LSgGqrqrl~iA~aL~----------~~P~vLlLDEPt-~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~  114 (203)
                      +.++..||||||||++||++|+          .+|+++|||||| ++||+..+..+.+.|+++  .|.|||++||++
T Consensus       463 ~~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~--~~~~iiiish~~  537 (562)
T PHA02562        463 DFSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL--KDTNVFVISHKD  537 (562)
T ss_pred             ccChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC--CCCeEEEEECch
Confidence            3467899999999999999987          599999999998 789999999999999998  588999999985

>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport

Probab=99.53  E-value=3.7e-14  Score=114.23  Aligned_cols=63  Identities=29%  Similarity=0.401  Sum_probs=56.3

Q ss_pred             CCCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q psy8397          53 GRLSGGQKKRLSIALELID----NPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPS  115 (203)
Q Consensus        53 ~~LSgGqrqrl~iA~aL~~----~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~  115 (203)
                      .+||+||+||+.+|++|..    +|+++|||||++|+|+..+..+.+.+.++..+|.++|++||+++
T Consensus        76 ~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~  142 (162)
T cd03227          76 LQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPE  142 (162)
T ss_pred             eeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHH
Confidence            4699999999999999987    78999999999999999999999999987655778888888753

These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.

>TIGR00634 recN DNA repair protein RecN

Probab=99.53  E-value=3e-14  Score=135.46  Aligned_cols=61  Identities=23%  Similarity=0.462  Sum_probs=54.9

Q ss_pred             CCCCHHHHHHHHHHHHHhcC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCC
Q psy8397          53 GRLSGGQKKRLSIALELIDN----PPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQP  114 (203)
Q Consensus        53 ~~LSgGqrqrl~iA~aL~~~----P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~  114 (203)
                      +.|||||+||++||++++..    |+++||||||+|||+..+..+.+.|+++.+ |.|||++||++
T Consensus       439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~-~~~vi~iTH~~  503 (563)
T TIGR00634       439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSE-RHQVLCVTHLP  503 (563)
T ss_pred             hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEEChH
Confidence            46899999999999999985    699999999999999999999999999874 67888888875

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=99.51  E-value=4.9e-14  Score=108.80  Aligned_cols=73  Identities=30%  Similarity=0.456  Sum_probs=60.8

Q ss_pred             eeEEEeeecccccCCCCHhHHHhHHHHHHHHHHHcCCcccccccC----CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Q psy8397           8 TIWCWQIISAQYSHRISVDDILDTIGLVDDILDTIGLVLSKHTLC----GRLSGGQKKRLSIALELIDNPPIMFLDEPTT   83 (203)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~L~~~~~~~v----~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~   83 (203)
                      ..+.+|.  ..++..+|+.++ ....++.++++.+++....++.+    ..||||||||++||+||+.+|+++||||||+
T Consensus        61 i~~~~~~--~~~~~~~tv~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~  137 (137)
T PF00005_consen   61 IGYVPQD--PQLFPGLTVREN-ESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN  137 (137)
T ss_dssp             EEEEESS--HCHHTTSBHHHH-HHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred             ccccccc--cccccccccccc-cccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence            3444543  345677888887 55677899999999887777777    9999999999999999999999999999996

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>KOG0062|consensus

Probab=99.50  E-value=4e-14  Score=132.15  Aligned_cols=86  Identities=26%  Similarity=0.346  Sum_probs=73.7

Q ss_pred             HHHHHcCCcc-cccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q psy8397          37 DILDTIGLVL-SKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPS  115 (203)
Q Consensus        37 ~~L~~~~L~~-~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~  115 (203)
                      .+|..+|+++ ...+++++||||.|-|++|||||..+|++|||||||+.||..+...+-+.|....   .|+|++|||-.
T Consensus       180 ~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~~---~T~liVSHDr~  256 (582)
T KOG0062|consen  180 KILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTWK---ITSLIVSHDRN  256 (582)
T ss_pred             HHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhCC---ceEEEEeccHH
Confidence            3888999974 5678999999999999999999999999999999999999999999888877754   89999999954


Q ss_pred             chhhhhhhccc
Q psy8397         116 ATIFEMVDHLG  126 (203)
Q Consensus       116 ~~~~~~~~~~~  126 (203)
                      . +-..|..|.
T Consensus       257 F-Ln~V~tdII  266 (582)
T KOG0062|consen  257 F-LNTVCTDII  266 (582)
T ss_pred             H-HHHHHHHHH
Confidence            3 555565553

>KOG0927|consensus

Probab=99.50  E-value=2.6e-14  Score=134.02  Aligned_cols=80  Identities=25%  Similarity=0.405  Sum_probs=70.8

Q ss_pred             HHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEE
Q psy8397          32 IGLVDDILDTIGLV-LSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCT  110 (203)
Q Consensus        32 ~~~v~~~L~~~~L~-~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~  110 (203)
                      .+.+..+|..+||. +....++++||+|||+||.+|+.++..|.+|+|||||+|||..+...+.+.|.+..   -+||++
T Consensus       486 ~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~~---Ggvv~v  562 (614)
T KOG0927|consen  486 LEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEFP---GGVVLV  562 (614)
T ss_pred             HHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhccC---Cceeee
Confidence            45678899999998 67789999999999999999999999999999999999999999999988888765   367777


Q ss_pred             ecCC
Q psy8397         111 IHQP  114 (203)
Q Consensus       111 tH~~  114 (203)
                      |||.
T Consensus       563 SHDf  566 (614)
T KOG0927|consen  563 SHDF  566 (614)
T ss_pred             echh
Confidence            7774

>PRK10869 recombination and repair protein; Provisional

Probab=99.48  E-value=1.6e-13  Score=130.49  Aligned_cols=60  Identities=25%  Similarity=0.579  Sum_probs=53.9

Q ss_pred             CCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCC
Q psy8397          54 RLSGGQKKRLSIALELID----NPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQP  114 (203)
Q Consensus        54 ~LSgGqrqrl~iA~aL~~----~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~  114 (203)
                      .|||||+||++||++++.    +|+++|||||++|||+.....+.+.|+++.+ +.|||++||++
T Consensus       430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~-~~qvi~iTH~~  493 (553)
T PRK10869        430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGE-STQVMCVTHLP  493 (553)
T ss_pred             hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEecCH
Confidence            479999999999999997    6899999999999999999999999999863 57777777775

>PRK03918 chromosome segregation protein; Provisional

Probab=99.46  E-value=2e-13  Score=134.55  Aligned_cols=67  Identities=31%  Similarity=0.466  Sum_probs=57.2

Q ss_pred             ccccCCCCCHHHHH------HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCC
Q psy8397          48 KHTLCGRLSGGQKK------RLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQP  114 (203)
Q Consensus        48 ~~~~v~~LSgGqrq------rl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~  114 (203)
                      .+.++..|||||++      |++||++++.+|+++||||||+|||+..+..+.+.|..+...|.|||++||++
T Consensus       782 ~~~~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~  854 (880)
T PRK03918        782 KERPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDE  854 (880)
T ss_pred             CcCChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCH
Confidence            35678899999999      45556678899999999999999999999999999999876667777777774

>PRK10246 exonuclease subunit SbcC; Provisional

Probab=99.44  E-value=3.8e-13  Score=135.99  Aligned_cols=66  Identities=33%  Similarity=0.363  Sum_probs=61.8

Q ss_pred             ccccCCCCCHHHHHHHHHHHHHhc--------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecC
Q psy8397          48 KHTLCGRLSGGQKKRLSIALELID--------NPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQ  113 (203)
Q Consensus        48 ~~~~v~~LSgGqrqrl~iA~aL~~--------~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~  113 (203)
                      .++++++|||||+++++||++|+.        +|++|||||||++||+.+...+++.|..+.+.|+||+++||.
T Consensus       943 ~~r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~ 1016 (1047)
T PRK10246        943 AVRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHV 1016 (1047)
T ss_pred             CCCCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecH
Confidence            457899999999999999999996        899999999999999999999999999998788899999985

>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes

Probab=99.40  E-value=3.7e-13  Score=114.30  Aligned_cols=73  Identities=22%  Similarity=0.130  Sum_probs=56.8

Q ss_pred             HHHHHHcCCcccccccCCCCCHHHHHHHHHHHHH--hcCCCEEEEeCC---CCCCCHHHHHHHHHHHHHHHh-CCCeEEE
Q psy8397          36 DDILDTIGLVLSKHTLCGRLSGGQKKRLSIALEL--IDNPPIMFLDEP---TTGLDSNSTNQCVAMLKALAR-GGRTIVC  109 (203)
Q Consensus        36 ~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL--~~~P~vLlLDEP---t~gLD~~~~~~i~~~l~~l~~-~g~tvi~  109 (203)
                      +++++.+++.+.   ..+.+|.|+++++.+++++  +.+|+++|||||   |+++|+.+...  ..++.+.+ .|.++|+
T Consensus        74 ~~il~~~~l~d~---~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~--~il~~l~~~~~~~vli  148 (222)
T cd03285          74 DCILARVGASDS---QLKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAW--AIAEYIATQIKCFCLF  148 (222)
T ss_pred             ceeEeeeccccc---hhcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHH--HHHHHHHhcCCCeEEE
Confidence            445556665533   3678999999999999999  899999999999   99999988853  44455554 3778888


Q ss_pred             EecC
Q psy8397         110 TIHQ  113 (203)
Q Consensus       110 ~tH~  113 (203)
                      +||+
T Consensus       149 sTH~  152 (222)
T cd03285         149 ATHF  152 (222)
T ss_pred             Eech
Confidence            8885

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PRK01156 chromosome segregation protein; Provisional

Probab=99.38  E-value=3.9e-12  Score=126.25  Aligned_cols=81  Identities=21%  Similarity=0.289  Sum_probs=62.8

Q ss_pred             HHHHHHHHcCCcc----------------cccccCCCCCHHHHHHHHH------HHHHhcCCCEEEEeCCCCCCCHHHHH
Q psy8397          34 LVDDILDTIGLVL----------------SKHTLCGRLSGGQKKRLSI------ALELIDNPPIMFLDEPTTGLDSNSTN   91 (203)
Q Consensus        34 ~v~~~L~~~~L~~----------------~~~~~v~~LSgGqrqrl~i------A~aL~~~P~vLlLDEPt~gLD~~~~~   91 (203)
                      .+.+++..+|+..                ....++..|||||+++++|      |++++.+|++++|||||+|||+..+.
T Consensus       765 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~  844 (895)
T PRK01156        765 LTRKYLFEFNLDFDDIDVDQDFNITVSRGGMVEGIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRT  844 (895)
T ss_pred             HHHHHHHHhCCCccceeecCCeeEEEEeCCccCccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHH
Confidence            4556777777641                1224688999999999975      58999999999999999999999999


Q ss_pred             HHHHHHHHHH-hC-C-CeEEEEecCC
Q psy8397          92 QCVAMLKALA-RG-G-RTIVCTIHQP  114 (203)
Q Consensus        92 ~i~~~l~~l~-~~-g-~tvi~~tH~~  114 (203)
                      .+.++++... .. | .|||++||++
T Consensus       845 ~l~~~l~~~~~~~~~~~~ii~ish~~  870 (895)
T PRK01156        845 NLKDIIEYSLKDSSDIPQVIMISHHR  870 (895)
T ss_pred             HHHHHHHHHHHhcCCCCeEEEEECch
Confidence            9999998643 32 2 3677777764

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=99.35  E-value=1.4e-12  Score=130.23  Aligned_cols=68  Identities=25%  Similarity=0.403  Sum_probs=59.2

Q ss_pred             cccccCCCCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q psy8397          47 SKHTLCGRLSGGQKKRLSIALELI----DNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPS  115 (203)
Q Consensus        47 ~~~~~v~~LSgGqrqrl~iA~aL~----~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~  115 (203)
                      ..+.++..|||||+++++||++++    .+|+++||||||+|||+..+..+.++|+.+.+ +.++|++||++.
T Consensus      1082 ~~~~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~-~~~~i~~sh~~~ 1153 (1179)
T TIGR02168      1082 KKNQNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK-NTQFIVITHNKG 1153 (1179)
T ss_pred             CccccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc-CCEEEEEEcChh
Confidence            356788899999999999999984    67799999999999999999999999999864 467888888754

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]

Probab=99.35  E-value=8.2e-12  Score=121.82  Aligned_cols=105  Identities=27%  Similarity=0.442  Sum_probs=88.4

Q ss_pred             HHHHcCCccc-ccccCCCCCHHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCC
Q psy8397          38 ILDTIGLVLS-KHTLCGRLSGGQKKRLSIALELIDNP--PIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQP  114 (203)
Q Consensus        38 ~L~~~~L~~~-~~~~v~~LSgGqrqrl~iA~aL~~~P--~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~  114 (203)
                      .|..+||..+ +++..++|||||.||+-||.-+-.+=  =+++||||+.||-+....++++.|+.|+..|.|+|++.||.
T Consensus       464 fL~~VGL~YLtL~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDe  543 (935)
T COG0178         464 FLVDVGLGYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDE  543 (935)
T ss_pred             HHHHcCcCcccccccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCH
Confidence            3556688753 68999999999999999999987663  37799999999999999999999999997777777777773


Q ss_pred             CchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEE------eCCeEEeeCCcccchh
Q psy8397         115 SATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVI------AEGHCVYKGSSANTIP  186 (203)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl------~~G~i~~~g~~~~~~~  186 (203)
                                                                  .....+|+++=|      ..|+|++.|+|++++.
T Consensus       544 --------------------------------------------dti~~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~  577 (935)
T COG0178         544 --------------------------------------------DTIRAADHIIDIGPGAGEHGGEIVAEGTPEELLA  577 (935)
T ss_pred             --------------------------------------------HHHhhcCEEEeeCCCCCcCCCEEEEccCHHHHHh
Confidence                                                        357789999865      4688999999999873

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

Probab=99.33  E-value=2.6e-12  Score=122.70  Aligned_cols=83  Identities=30%  Similarity=0.443  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHcCCcccccccC------CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q psy8397          32 IGLVDDILDTIGLVLSKHTLC------GRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGR  105 (203)
Q Consensus        32 ~~~v~~~L~~~~L~~~~~~~v------~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~  105 (203)
                      .+.+.++|.++||.++.++.=      ..||+||||||++||.|+++|++++|||.|++||+.+...+++.+++-- .+.
T Consensus       487 d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~l-p~~  565 (604)
T COG4178         487 DAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL-PDA  565 (604)
T ss_pred             hHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhC-CCC
Confidence            456788999999987765432      2599999999999999999999999999999999999999999988732 489


Q ss_pred             eEEEEecCCC
Q psy8397         106 TIVCTIHQPS  115 (203)
Q Consensus       106 tvi~~tH~~~  115 (203)
                      |||-++|...
T Consensus       566 tvISV~Hr~t  575 (604)
T COG4178         566 TVISVGHRPT  575 (604)
T ss_pred             EEEEeccchh
Confidence            9999999975

>KOG0066|consensus

Probab=99.32  E-value=3.7e-12  Score=118.05  Aligned_cols=79  Identities=29%  Similarity=0.434  Sum_probs=69.6

Q ss_pred             HHHHHHHHHHcCCccccc-ccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEE
Q psy8397          32 IGLVDDILDTIGLVLSKH-TLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCT  110 (203)
Q Consensus        32 ~~~v~~~L~~~~L~~~~~-~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~  110 (203)
                      .+.++..|-.|||...++ -++..||||||-||++|--.+..|+||||||||++||+.+...+.+.|.++.   -.||++
T Consensus       681 yq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney~---GgVi~V  757 (807)
T KOG0066|consen  681 YQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEYN---GGVIMV  757 (807)
T ss_pred             hHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhcc---CcEEEE
Confidence            456778899999986665 4688999999999999999999999999999999999999999999988876   367888


Q ss_pred             ecC
Q psy8397         111 IHQ  113 (203)
Q Consensus       111 tH~  113 (203)
                      |||
T Consensus       758 sHD  760 (807)
T KOG0066|consen  758 SHD  760 (807)
T ss_pred             ecc
Confidence            887

>KOG2355|consensus

Probab=99.29  E-value=9.7e-12  Score=105.87  Aligned_cols=133  Identities=23%  Similarity=0.291  Sum_probs=100.4

Q ss_pred             CCceeEEEeeeccc---ccCCCCHhHHHh-----HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEE
Q psy8397           5 NHGTIWCWQIISAQ---YSHRISVDDILD-----TIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIM   76 (203)
Q Consensus         5 ~~~~~~~~~~~~~~---~~~~~~~~~~~~-----~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vL   76 (203)
                      +-|+-|+--...+.   +...+++...+.     ..+|-+.+++.+++.-  .-+...+|-|||+||.|+..|++.-++|
T Consensus        92 YLGgeW~~~~~~agevplq~D~sae~mifgV~g~dp~Rre~LI~iLDIdl--~WRmHkvSDGqrRRVQicMGLL~PfkVL  169 (291)
T KOG2355|consen   92 YLGGEWSKTVGIAGEVPLQGDISAEHMIFGVGGDDPERREKLIDILDIDL--RWRMHKVSDGQRRRVQICMGLLKPFKVL  169 (291)
T ss_pred             EecccccccccccccccccccccHHHHHhhccCCChhHhhhhhhheeccc--eEEEeeccccchhhhHHHHhcccceeEE
Confidence            34555555333322   122467766542     2355677788777753  2355678999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecC
Q psy8397          77 FLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQ  155 (203)
Q Consensus        77 lLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~  155 (203)
                      +|||-|.-||..++..+++++++-.++ |.|||+.||..+                                        
T Consensus       170 LLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFD----------------------------------------  209 (291)
T KOG2355|consen  170 LLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFD----------------------------------------  209 (291)
T ss_pred             EeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeecc----------------------------------------
Confidence            999999999999999999999998764 999999999864                                        


Q ss_pred             chhHHHhhcCEEEEEeCCeEEeeCCcc
Q psy8397         156 PSATIFEMVDHLYVIAEGHCVYKGSSA  182 (203)
Q Consensus       156 ~~~~i~~~~d~v~vl~~G~i~~~g~~~  182 (203)
                         -++....+++.++.|+++..-+..
T Consensus       210 ---GLe~Wpthl~yi~~Gkl~~~l~~~  233 (291)
T KOG2355|consen  210 ---GLETWPTHLVYIKSGKLVDNLKYQ  233 (291)
T ss_pred             ---chhhcchhEEEecCCeeeeccccc
Confidence               256788899999999988744443

>TIGR00606 rad50 rad50

Probab=99.29  E-value=5.8e-12  Score=129.86  Aligned_cols=68  Identities=31%  Similarity=0.381  Sum_probs=60.8

Q ss_pred             cccCCCCCHHHHH------HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-----hCCCeEEEEecCCCc
Q psy8397          49 HTLCGRLSGGQKK------RLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALA-----RGGRTIVCTIHQPSA  116 (203)
Q Consensus        49 ~~~v~~LSgGqrq------rl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~-----~~g~tvi~~tH~~~~  116 (203)
                      ....+.|||||||      |++||++++.+|++|+|||||+|||+.+...+.+.|..+.     ..|.|||++||++..
T Consensus      1194 ~~~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~ 1272 (1311)
T TIGR00606      1194 LDMRGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDF 1272 (1311)
T ss_pred             cCCCCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHH
Confidence            3455789999999      9999999999999999999999999999999999888874     238899999999764

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage

Probab=99.27  E-value=1.1e-11  Score=107.66  Aligned_cols=58  Identities=22%  Similarity=0.333  Sum_probs=48.9

Q ss_pred             CCCCCHHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecC
Q psy8397          52 CGRLSGGQKKRLSIALELI---------DNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQ  113 (203)
Q Consensus        52 v~~LSgGqrqrl~iA~aL~---------~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~  113 (203)
                      .+-+|+||||++++|++|+         .+|++++|||||++||+..+..+++.++++.    .+++++|+
T Consensus       181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~----q~ii~~~~  247 (270)
T cd03242         181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV----QTFVTTTD  247 (270)
T ss_pred             HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC----CEEEEeCC
Confidence            4458999999999999985         7999999999999999999999999887653    34555554

When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=99.27  E-value=1.4e-11  Score=102.21  Aligned_cols=71  Identities=17%  Similarity=0.124  Sum_probs=54.9

Q ss_pred             CCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCeEEEEecCC
Q psy8397          43 GLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVA-MLKALARGGRTIVCTIHQP  114 (203)
Q Consensus        43 ~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~-~l~~l~~~g~tvi~~tH~~  114 (203)
                      +..+......+.+|++++| +..+.+++.+|+++||||||+|+|+..+..+.. .++.+.+.+.++|++||++
T Consensus        80 ~~~d~i~~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~tH~~  151 (202)
T cd03243          80 GAEDSISDGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFATHFH  151 (202)
T ss_pred             cCcccccCCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEECChH
Confidence            3333445556678888776 666678889999999999999999999888755 5677776678888888874

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=99.24  E-value=1.8e-11  Score=122.79  Aligned_cols=66  Identities=15%  Similarity=0.206  Sum_probs=56.3

Q ss_pred             ccccCCCCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCC
Q psy8397          48 KHTLCGRLSGGQKKRLSIALELID----NPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQP  114 (203)
Q Consensus        48 ~~~~v~~LSgGqrqrl~iA~aL~~----~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~  114 (203)
                      ..+++..||||||++++||++++.    +|+++|||||++|||+..+..+.++|+++.. +.++|++||+.
T Consensus      1068 ~~~~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~-~~~~i~~t~~~ 1137 (1164)
T TIGR02169      1068 PVQRLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAG-EAQFIVVSLRS 1137 (1164)
T ss_pred             CCCcchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcC-CCeEEEEECcH
Confidence            345677899999999999999985    7899999999999999999999999998763 35666666663

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>KOG0066|consensus

Probab=99.22  E-value=3.1e-12  Score=118.60  Aligned_cols=81  Identities=27%  Similarity=0.393  Sum_probs=70.8

Q ss_pred             HHHHHHHHHHcCCcc-cccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEE
Q psy8397          32 IGLVDDILDTIGLVL-SKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCT  110 (203)
Q Consensus        32 ~~~v~~~L~~~~L~~-~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~  110 (203)
                      ..+++++|..+|+.. ..+++...+|||.|-||++||||..+|-+|.|||||+.||......+-..|+.+.   +|++|+
T Consensus       389 EarARRILAGLGFskEMQ~rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWk---KTLLIV  465 (807)
T KOG0066|consen  389 EARARRILAGLGFSKEMQERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWK---KTLLIV  465 (807)
T ss_pred             hhHHHHHHhhcCCChhHhcCCccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhh---heeEEE
Confidence            346778899999874 5688899999999999999999999999999999999999998888888888876   588888


Q ss_pred             ecCCC
Q psy8397         111 IHQPS  115 (203)
Q Consensus       111 tH~~~  115 (203)
                      |||-.
T Consensus       466 SHDQg  470 (807)
T KOG0066|consen  466 SHDQG  470 (807)
T ss_pred             ecccc
Confidence            88853

>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family

Probab=99.22  E-value=8.1e-12  Score=102.70  Aligned_cols=79  Identities=20%  Similarity=0.169  Sum_probs=62.1

Q ss_pred             HHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhC-CCeEEEEecC
Q psy8397          36 DDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV-AMLKALARG-GRTIVCTIHQ  113 (203)
Q Consensus        36 ~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~-~~l~~l~~~-g~tvi~~tH~  113 (203)
                      ++++..++..+..++..+++|+|++|...+.. .+.+|+++|+|||++|+|+.....+. ..++.+.++ |.++|++||+
T Consensus        43 d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~-~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~  121 (185)
T smart00534       43 DRIFTRIGASDSLAQGLSTFMVEMKETANILK-NATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHY  121 (185)
T ss_pred             ceEEEEeCCCCchhccccHHHHHHHHHHHHHH-hCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecH
Confidence            44566677777888889999999987433333 23599999999999999999887764 567777764 8999999999


Q ss_pred             CC
Q psy8397         114 PS  115 (203)
Q Consensus       114 ~~  115 (203)
                      ++
T Consensus       122 ~~  123 (185)
T smart00534      122 HE  123 (185)
T ss_pred             HH
Confidence            63

>PRK02224 chromosome segregation protein; Provisional

Probab=99.18  E-value=6.5e-11  Score=117.16  Aligned_cols=64  Identities=38%  Similarity=0.528  Sum_probs=54.3

Q ss_pred             cCCCCCHHHHH------HHHHHHHHhcC-----C-CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC-eEEEEecCC
Q psy8397          51 LCGRLSGGQKK------RLSIALELIDN-----P-PIMFLDEPTTGLDSNSTNQCVAMLKALARGGR-TIVCTIHQP  114 (203)
Q Consensus        51 ~v~~LSgGqrq------rl~iA~aL~~~-----P-~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~-tvi~~tH~~  114 (203)
                      .+..||||||+      |+++|++++.+     | +++||||||++||+..+..+.++|+.+...|. +||++||++
T Consensus       778 ~~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~  854 (880)
T PRK02224        778 EPEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDD  854 (880)
T ss_pred             ChhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECCh
Confidence            46789999999      88999888864     3 67999999999999999999999999875554 677777775

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=99.16  E-value=5.2e-11  Score=109.18  Aligned_cols=104  Identities=27%  Similarity=0.349  Sum_probs=82.8

Q ss_pred             HHHHHHHHHHcCCccc---ccccC--CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH-HHhCCC
Q psy8397          32 IGLVDDILDTIGLVLS---KHTLC--GRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKA-LARGGR  105 (203)
Q Consensus        32 ~~~v~~~L~~~~L~~~---~~~~v--~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~-l~~~g~  105 (203)
                      .+.++.+|+.+.+.++   .|...  -.||.|||+|+++--|++-+-+|++|||=.+-.||.-|+.|+..+-. ++++|+
T Consensus       421 ~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGK  500 (546)
T COG4615         421 PQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGK  500 (546)
T ss_pred             hHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCC
Confidence            4457777887776543   23333  26999999999999999999999999999999999999999986655 565577


Q ss_pred             eEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeC
Q psy8397         106 TIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKG  179 (203)
Q Consensus       106 tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g  179 (203)
                      ||+.+|||                                          .  .-+..+||++.+.+|+++..-
T Consensus       501 TI~aIsHD------------------------------------------d--~YF~~ADrll~~~~G~~~e~t  530 (546)
T COG4615         501 TIFAISHD------------------------------------------D--HYFIHADRLLEMRNGQLSELT  530 (546)
T ss_pred             eEEEEecC------------------------------------------c--hhhhhHHHHHHHhcCceeecc
Confidence            77777776                                          2  247789999999999998753

>PRK00064 recF recombination protein F; Reviewed

Probab=99.14  E-value=1.3e-10  Score=105.20  Aligned_cols=62  Identities=31%  Similarity=0.411  Sum_probs=53.6

Q ss_pred             cCCCCCHHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q psy8397          51 LCGRLSGGQKKRLSIALELI---------DNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPS  115 (203)
Q Consensus        51 ~v~~LSgGqrqrl~iA~aL~---------~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~  115 (203)
                      ....+|.||+|++.+|+.|+         .+|++++||||+++||+..+..+++.+.++   +.++++|||+++
T Consensus       270 ~~~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~---~~qv~it~~~~~  340 (361)
T PRK00064        270 AADFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL---GAQVFITTTDLE  340 (361)
T ss_pred             HHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc---CCEEEEEcCChh
Confidence            44579999999999999986         799999999999999999999999988764   357888888753

>TIGR00611 recf recF protein

Probab=99.03  E-value=4.1e-10  Score=102.33  Aligned_cols=59  Identities=29%  Similarity=0.442  Sum_probs=55.1

Q ss_pred             CCCHHHHHHHHHHHHHhc---------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q psy8397          54 RLSGGQKKRLSIALELID---------NPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPS  115 (203)
Q Consensus        54 ~LSgGqrqrl~iA~aL~~---------~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~  115 (203)
                      .+|.||+|++.||..|+.         +|+|||||||+++||+..+..+++.|.+.   |.++++|||+++
T Consensus       275 ~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~---~~qv~it~~~~~  342 (365)
T TIGR00611       275 FASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL---GVQVFVTAISLD  342 (365)
T ss_pred             hcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc---CCEEEEEecChh
Confidence            589999999999999999         99999999999999999999999998764   779999999975

All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes

Probab=98.99  E-value=6.1e-10  Score=93.60  Aligned_cols=79  Identities=16%  Similarity=0.225  Sum_probs=64.7

Q ss_pred             HHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHhCCCeEEEEecCC
Q psy8397          36 DDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQC-VAMLKALARGGRTIVCTIHQP  114 (203)
Q Consensus        36 ~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i-~~~l~~l~~~g~tvi~~tH~~  114 (203)
                      ++++..++..+..++..+++|+|++|+ ..+.+++.+|+++|||||++|+|+.....+ +..++.+.+.|.++|++||+.
T Consensus        73 d~I~~~~~~~d~~~~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~~~~~i~~TH~~  151 (204)
T cd03282          73 NRLLSRLSNDDSMERNLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIKKESTVFFATHFR  151 (204)
T ss_pred             hheeEecCCccccchhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChH
Confidence            345566666666778888999999975 566678899999999999999999876665 457888888899999999996


Q ss_pred             C
Q psy8397         115 S  115 (203)
Q Consensus       115 ~  115 (203)
                      +
T Consensus       152 ~  152 (204)
T cd03282         152 D  152 (204)
T ss_pred             H
Confidence            5

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=98.96  E-value=1.2e-09  Score=113.37  Aligned_cols=66  Identities=26%  Similarity=0.366  Sum_probs=57.5

Q ss_pred             cccccCCCCCHHHHHHHH----HHHH--------HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCC
Q psy8397          47 SKHTLCGRLSGGQKKRLS----IALE--------LIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQP  114 (203)
Q Consensus        47 ~~~~~v~~LSgGqrqrl~----iA~a--------L~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~  114 (203)
                      ..+++++.|||||||+++    +|++        +..+|++++|||||+|||+.++..+++++.++   |.++|+|||.+
T Consensus      1240 ~~~~~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l---~~~~i~~s~~~ 1316 (1353)
T TIGR02680      1240 PLTHRFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL---DLDFVMTSERE 1316 (1353)
T ss_pred             chhccccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh---CCCEEEEccch
Confidence            345567899999999996    5655        55899999999999999999999999999888   78999999986


Q ss_pred             C
Q psy8397         115 S  115 (203)
Q Consensus       115 ~  115 (203)
                      .
T Consensus      1317 W 1317 (1353)
T TIGR02680      1317 W 1317 (1353)
T ss_pred             h
Confidence            4

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=98.93  E-value=4.2e-09  Score=105.36  Aligned_cols=64  Identities=33%  Similarity=0.480  Sum_probs=56.2

Q ss_pred             ccCCCCCHHHHHHHHHHHHHh------cC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecC
Q psy8397          50 TLCGRLSGGQKKRLSIALELI------DN--PPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQ  113 (203)
Q Consensus        50 ~~v~~LSgGqrqrl~iA~aL~------~~--P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~  113 (203)
                      +++++||||++-.++||.+|+      .+  -++|||||||..||+.....+.+.|..+...|.+|++|||+
T Consensus       811 r~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~  882 (908)
T COG0419         811 RPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHV  882 (908)
T ss_pred             cccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeCh
Confidence            688899999999887776654      45  69999999999999999999999999999778888888887

>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []

Probab=98.92  E-value=1.2e-08  Score=84.97  Aligned_cols=75  Identities=28%  Similarity=0.511  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeE
Q psy8397          32 IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELI----DNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTI  107 (203)
Q Consensus        32 ~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~----~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tv  107 (203)
                      .+.+.+.+...++...      .||||||..++||.-|+    .++++++||||.++||...+..+.++|+++.+ +.-+
T Consensus       120 ~~~~~~~l~~~~i~~~------~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~-~~Q~  192 (220)
T PF02463_consen  120 LKDLEELLPEVGISPE------FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSK-QSQF  192 (220)
T ss_dssp             HHHHHHHHHCTTTTTT------GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTT-TSEE
T ss_pred             cccccccccccccccc------ccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence            3455667777666543      89999999999997653    47889999999999999999999999998763 3556


Q ss_pred             EEEecC
Q psy8397         108 VCTIHQ  113 (203)
Q Consensus       108 i~~tH~  113 (203)
                      |++||+
T Consensus       193 ii~Th~  198 (220)
T PF02463_consen  193 IITTHN  198 (220)
T ss_dssp             EEE-S-
T ss_pred             cccccc
Confidence            666665

The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....

>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A

Probab=98.88  E-value=6.3e-09  Score=83.64  Aligned_cols=66  Identities=27%  Similarity=0.451  Sum_probs=55.4

Q ss_pred             ccCCCCCHHHHHHHHHHHHHhcCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q psy8397          50 TLCGRLSGGQKKRLSIALELIDNP---PIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPS  115 (203)
Q Consensus        50 ~~v~~LSgGqrqrl~iA~aL~~~P---~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~  115 (203)
                      .+...+|.|++|.+.++..+...+   .++++|||-++|.|..++.+++.|+.....+.-||+|||.+.
T Consensus       232 ~~~~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~  300 (303)
T PF13304_consen  232 IPLSSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPF  300 (303)
T ss_dssp             GGGS---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GG
T ss_pred             EeeccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccch
Confidence            345678999999999998888776   899999999999999999999999887767899999999864

>KOG0060|consensus

Probab=98.86  E-value=8.2e-09  Score=98.12  Aligned_cols=80  Identities=21%  Similarity=0.240  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHcCCccccccc-----------CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy8397          32 IGLVDDILDTIGLVLSKHTL-----------CGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKAL  100 (203)
Q Consensus        32 ~~~v~~~L~~~~L~~~~~~~-----------v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l  100 (203)
                      .+++.+.|+.++|.+...+-           ...||+||+||+++||-+.++|++-||||-|+++|......+++.++++
T Consensus       537 d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~  616 (659)
T KOG0060|consen  537 DEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREM  616 (659)
T ss_pred             HHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHc
Confidence            34566677777665543322           2259999999999999999999999999999999999988888877654


Q ss_pred             HhCCCeEEEEecCC
Q psy8397         101 ARGGRTIVCTIHQP  114 (203)
Q Consensus       101 ~~~g~tvi~~tH~~  114 (203)
                         |.|.|=++|..
T Consensus       617 ---giT~iSVgHRk  627 (659)
T KOG0060|consen  617 ---GITFISVGHRK  627 (659)
T ss_pred             ---CCeEEEeccHH
Confidence               56666666663

>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

Probab=98.83  E-value=1.1e-08  Score=94.70  Aligned_cols=82  Identities=29%  Similarity=0.424  Sum_probs=73.1

Q ss_pred             HHHHHHHHcCCcc--cccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEE
Q psy8397          34 LVDDILDTIGLVL--SKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCT  110 (203)
Q Consensus        34 ~v~~~L~~~~L~~--~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~  110 (203)
                      .+.++|...|+.+  +.-++.++||-|||.|+.||.+++..|.+++.||-.+.||+.++.++..-|.+++++ |.|++++
T Consensus       485 ~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivv  564 (593)
T COG2401         485 AAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVV  564 (593)
T ss_pred             HHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEE
Confidence            3567899999975  346778899999999999999999999999999999999999999999999999975 8888888


Q ss_pred             ecCCC
Q psy8397         111 IHQPS  115 (203)
Q Consensus       111 tH~~~  115 (203)
                      ||.++
T Consensus       565 ThrpE  569 (593)
T COG2401         565 THRPE  569 (593)
T ss_pred             ecCHH
Confidence            88764

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=98.83  E-value=1.6e-08  Score=81.54  Aligned_cols=75  Identities=17%  Similarity=0.025  Sum_probs=61.9

Q ss_pred             HcCCcccccccCCCCCHHHHH------HHHHHHHHhcCCCEEEEeCCCCCCC---HHHHHHHHHHHHHHHhCCCeEEEEe
Q psy8397          41 TIGLVLSKHTLCGRLSGGQKK------RLSIALELIDNPPIMFLDEPTTGLD---SNSTNQCVAMLKALARGGRTIVCTI  111 (203)
Q Consensus        41 ~~~L~~~~~~~v~~LSgGqrq------rl~iA~aL~~~P~vLlLDEPt~gLD---~~~~~~i~~~l~~l~~~g~tvi~~t  111 (203)
                      ..|.....+.++..+|+|++|      ......+...+|+++++|||++.+|   ...+..+.+.++.+++.|.|+|+++
T Consensus        58 ~~g~l~~~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~  137 (187)
T cd01124          58 DEGLLAIVDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTS  137 (187)
T ss_pred             hcCCeEEEecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence            344445667788899999998      5555555678999999999999999   8888888899999988899999999


Q ss_pred             cCCC
Q psy8397         112 HQPS  115 (203)
Q Consensus       112 H~~~  115 (203)
                      |...
T Consensus       138 ~~~~  141 (187)
T cd01124         138 EQSG  141 (187)
T ss_pred             cccc
Confidence            9854

A related protein is found in archaea.

>PRK14079 recF recombination protein F; Provisional

Probab=98.82  E-value=1.2e-08  Score=92.22  Aligned_cols=47  Identities=26%  Similarity=0.476  Sum_probs=43.5

Q ss_pred             CCCHHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy8397          54 RLSGGQKKRLSIALELI---------DNPPIMFLDEPTTGLDSNSTNQCVAMLKAL  100 (203)
Q Consensus        54 ~LSgGqrqrl~iA~aL~---------~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l  100 (203)
                      -+|+||++++.+|..|+         .+|++++||||+++||+..+..+++.|...
T Consensus       263 ~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~  318 (349)
T PRK14079        263 YASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASL  318 (349)
T ss_pred             hCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcC
Confidence            48999999999999999         899999999999999999999999887653

>KOG0063|consensus

Probab=98.80  E-value=1e-08  Score=94.95  Aligned_cols=83  Identities=23%  Similarity=0.368  Sum_probs=75.8

Q ss_pred             HHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEec
Q psy8397          33 GLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH  112 (203)
Q Consensus        33 ~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH  112 (203)
                      +...++++.+.|....++-+..||||+-||.+||.+.+++.++.++|||.+-||...+..-...|+.+.....-||++.|
T Consensus       192 ~~~~~~~~~~~L~~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~~IRsl~~p~~YiIVVEH  271 (592)
T KOG0063|consen  192 DNKEEVCDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAITIRSLINPDRYIIVVEH  271 (592)
T ss_pred             ccHHHHHHHHHHhhHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHHHHHHHhhCCCCeEEEEEe
Confidence            34567788888999999999999999999999999999999999999999999999999999999999877778888888


Q ss_pred             CCC
Q psy8397         113 QPS  115 (203)
Q Consensus       113 ~~~  115 (203)
                      |++
T Consensus       272 DLs  274 (592)
T KOG0063|consen  272 DLS  274 (592)
T ss_pred             ech
Confidence            875

>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes

Probab=98.76  E-value=1e-08  Score=86.66  Aligned_cols=59  Identities=25%  Similarity=0.322  Sum_probs=42.4

Q ss_pred             CCCHHHHHH----HHHHHHH--hcCCCEEEEeCC---CCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCC
Q psy8397          54 RLSGGQKKR----LSIALEL--IDNPPIMFLDEP---TTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQP  114 (203)
Q Consensus        54 ~LSgGqrqr----l~iA~aL--~~~P~vLlLDEP---t~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~  114 (203)
                      ++|.|+.+.    ..++.++  +.+|+++|||||   |+++|..+.  ...+++.+.+. +.|+|++||+.
T Consensus        85 ~ls~g~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~--~~~il~~l~~~~~~~vi~~TH~~  153 (216)
T cd03284          85 DLAGGRSTFMVEMVETANILNNATERSLVLLDEIGRGTSTYDGLSI--AWAIVEYLHEKIGAKTLFATHYH  153 (216)
T ss_pred             hhccCcchHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHH--HHHHHHHHHhccCCcEEEEeCcH
Confidence            577776553    3455555  469999999999   888887552  34456666665 78888889884

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam

>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed

Probab=98.76  E-value=1.4e-08  Score=100.45  Aligned_cols=67  Identities=21%  Similarity=0.307  Sum_probs=58.8

Q ss_pred             ccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCeEEEEecCCC
Q psy8397          48 KHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVA-MLKALARGGRTIVCTIHQPS  115 (203)
Q Consensus        48 ~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~-~l~~l~~~g~tvi~~tH~~~  115 (203)
                      .....+++|+||++++.|++++ .+|+++|||||++|+||.....+.. ++..+...|.++|++||+.+
T Consensus       384 i~~~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~e  451 (782)
T PRK00409        384 IEQSLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKE  451 (782)
T ss_pred             hhhchhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHH
Confidence            3445667999999999999988 8999999999999999999998864 67778778999999999964

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=98.72  E-value=4e-08  Score=82.07  Aligned_cols=56  Identities=25%  Similarity=0.329  Sum_probs=44.7

Q ss_pred             HHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhCCCeEEEEecCCCc
Q psy8397          61 KRLSIALELID--NPPIMFLDEPTTGLDSNSTNQCV-AMLKALARGGRTIVCTIHQPSA  116 (203)
Q Consensus        61 qrl~iA~aL~~--~P~vLlLDEPt~gLD~~~~~~i~-~~l~~l~~~g~tvi~~tH~~~~  116 (203)
                      +|+.-+...+.  +|+++|+|||++|+|+..+..+. ..++.+.+.|.|+|++||+++.
T Consensus        92 ~~~~~iL~~~~~~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~~~~tiiivTH~~~~  150 (199)
T cd03283          92 RRLKEIVEKAKKGEPVLFLLDEIFKGTNSRERQAASAAVLKFLKNKNTIGIISTHDLEL  150 (199)
T ss_pred             HHHHHHHHhccCCCCeEEEEecccCCCCHHHHHHHHHHHHHHHHHCCCEEEEEcCcHHH
Confidence            34433333444  99999999999999999998775 5788888779999999999764

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>TIGR01069 mutS2 MutS2 family protein

Probab=98.70  E-value=1.8e-08  Score=99.53  Aligned_cols=68  Identities=19%  Similarity=0.269  Sum_probs=59.5

Q ss_pred             cccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHhCCCeEEEEecCCC
Q psy8397          47 SKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQC-VAMLKALARGGRTIVCTIHQPS  115 (203)
Q Consensus        47 ~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i-~~~l~~l~~~g~tvi~~tH~~~  115 (203)
                      .....++++|+||+++..+++.+ .+|+++|||||++|+||.....+ +.++..+.+.|.++|++||+.+
T Consensus       378 si~~~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~e  446 (771)
T TIGR01069       378 SIEQNLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKE  446 (771)
T ss_pred             HHhhhhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHH
Confidence            34455678999999999998876 79999999999999999999999 5688888888999999999964

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.

>KOG0063|consensus

Probab=98.69  E-value=2.2e-08  Score=92.88  Aligned_cols=91  Identities=24%  Similarity=0.350  Sum_probs=75.3

Q ss_pred             CCHhHHHhH--------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHH
Q psy8397          23 ISVDDILDT--------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV   94 (203)
Q Consensus        23 ~~~~~~~~~--------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~   94 (203)
                      -||..++..        .+.+.++++-+.+++..++.+.+||||+.||+++|.+|-..+++++.|||.+-||..++..--
T Consensus       417 ~tvR~ll~~kIr~ay~~pqF~~dvmkpL~ie~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~As  496 (592)
T KOG0063|consen  417 GTVRQLLHTKIRDAYMHPQFVNDVMKPLQIENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIAS  496 (592)
T ss_pred             chHHHHHHHHhHhhhcCHHHHHhhhhhhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHH
Confidence            466665543        234677888888999999999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHH-hCCCeEEEEecC
Q psy8397          95 AMLKALA-RGGRTIVCTIHQ  113 (203)
Q Consensus        95 ~~l~~l~-~~g~tvi~~tH~  113 (203)
                      ..+++.. +.++|-.++.||
T Consensus       497 kvikRfilhakktafvVEhd  516 (592)
T KOG0063|consen  497 KVIKRFILHAKKTAFVVEHD  516 (592)
T ss_pred             HHHHHHHHhccchhhhhhhH
Confidence            8888864 335566666665

>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes

Probab=98.63  E-value=7.7e-08  Score=81.18  Aligned_cols=60  Identities=18%  Similarity=0.232  Sum_probs=50.3

Q ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHhC---CCeEEEEecCCCc
Q psy8397          57 GGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQC-VAMLKALARG---GRTIVCTIHQPSA  116 (203)
Q Consensus        57 gGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i-~~~l~~l~~~---g~tvi~~tH~~~~  116 (203)
                      .-+.||++++++++.+|+++|||||++|+|+.....+ ...++.+.+.   +.++|++||+++.
T Consensus        93 ~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l  156 (213)
T cd03281          93 MIDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHEL  156 (213)
T ss_pred             HHHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHH
Confidence            4467999999999999999999999999999865554 5788888764   3589999999753

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>KOG0064|consensus

Probab=98.57  E-value=6.5e-08  Score=91.59  Aligned_cols=93  Identities=25%  Similarity=0.324  Sum_probs=71.3

Q ss_pred             CCCHhHHHhH---HHHHHHHHHHcCCcccccccCC---------CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Q psy8397          22 RISVDDILDT---IGLVDDILDTIGLVLSKHTLCG---------RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNS   89 (203)
Q Consensus        22 ~~~~~~~~~~---~~~v~~~L~~~~L~~~~~~~v~---------~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~   89 (203)
                      +.|+++..+.   .+....+|+.+.|.....+-.+         -||||+|||+++||.+-|+|+..+|||-|++..+..
T Consensus       568 PdS~e~~~~kg~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidv  647 (728)
T KOG0064|consen  568 PDSSEQMKRKGYTDQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDV  647 (728)
T ss_pred             CCcHHHHHhcCCCHHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhhhhhcccccch
Confidence            3566655432   3455666777766655444432         599999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHHHhCCCeEEEEecCCCch
Q psy8397          90 TNQCVAMLKALARGGRTIVCTIHQPSAT  117 (203)
Q Consensus        90 ~~~i~~~l~~l~~~g~tvi~~tH~~~~~  117 (203)
                      ...+++..+.   -|.+++-+||.|+.|
T Consensus       648 E~~i~~~ak~---~gi~llsithrpslw  672 (728)
T KOG0064|consen  648 EGKIFQAAKD---AGISLLSITHRPSLW  672 (728)
T ss_pred             HHHHHHHHHh---cCceEEEeecCccHH
Confidence            7777765543   389999999999865

>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A

Probab=98.55  E-value=1.5e-07  Score=69.42  Aligned_cols=52  Identities=31%  Similarity=0.569  Sum_probs=39.7

Q ss_pred             ccccCCCCCHHHHH-HHHHHHH------Hhc------CCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy8397          48 KHTLCGRLSGGQKK-RLSIALE------LID------NPPIMFLDEPTTGLDSNSTNQCVAMLKA   99 (203)
Q Consensus        48 ~~~~v~~LSgGqrq-rl~iA~a------L~~------~P~vLlLDEPt~gLD~~~~~~i~~~l~~   99 (203)
                      ..+..+.+|||||| .+.+|.+      +..      .|++++||||+++||+..+..+++++++
T Consensus        26 ~~~~~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~   90 (90)
T PF13558_consen   26 TSRSFGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ   90 (90)
T ss_dssp             EEEEGGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred             eeccCCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence            35678899999994 4444332      333      3789999999999999999999998874

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=98.45  E-value=5.7e-07  Score=74.67  Aligned_cols=50  Identities=26%  Similarity=0.339  Sum_probs=45.0

Q ss_pred             CCCCHH--HHHHHHHHHHHhcCCCEEEEeCCC-----CCCCHHHHHHHHHHHHHHHh
Q psy8397          53 GRLSGG--QKKRLSIALELIDNPPIMFLDEPT-----TGLDSNSTNQCVAMLKALAR  102 (203)
Q Consensus        53 ~~LSgG--qrqrl~iA~aL~~~P~vLlLDEPt-----~gLD~~~~~~i~~~l~~l~~  102 (203)
                      +..||+  +++++.||++++.+|+++++||||     +|||+..+..+.+.+++++.
T Consensus       149 Sa~~~~~v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~  205 (215)
T PTZ00132        149 SAKSNYNFEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN  205 (215)
T ss_pred             eCCCCCCHHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence            344444  899999999999999999999999     99999999999999999873

>PRK13695 putative NTPase; Provisional

Probab=98.38  E-value=8.8e-07  Score=71.65  Aligned_cols=82  Identities=10%  Similarity=0.185  Sum_probs=61.5

Q ss_pred             cccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC--CCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccc
Q psy8397          49 HTLCGRLSGGQKKRLSIALELIDNPPIMFLDEP--TTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLG  126 (203)
Q Consensus        49 ~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEP--t~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~  126 (203)
                      .++...+||+++-+..+++..+.+|+++++|||  +.++|+    .+.+.+..+.+.|.++|+++|+-            
T Consensus        73 ~~~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~----~~~~~l~~~~~~~~~~i~v~h~~------------  136 (174)
T PRK13695         73 GKYVVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSP----KFVKAVEEVLDSEKPVIATLHRR------------  136 (174)
T ss_pred             eeEEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhH----HHHHHHHHHHhCCCeEEEEECch------------
Confidence            344567999999999999999999999999995  445553    35566666655567777777762            


Q ss_pred             cCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEee
Q psy8397         127 LDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYK  178 (203)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~  178 (203)
                                                      .+..++|++..+.+|++..-
T Consensus       137 --------------------------------~~~~~~~~i~~~~~~~i~~~  156 (174)
T PRK13695        137 --------------------------------SVHPFVQEIKSRPGGRVYEL  156 (174)
T ss_pred             --------------------------------hhHHHHHHHhccCCcEEEEE
Confidence                                            24577889999999987654

>PRK13830 conjugal transfer protein TrbE; Provisional

Probab=98.29  E-value=8.1e-07  Score=88.38  Aligned_cols=77  Identities=18%  Similarity=0.189  Sum_probs=60.4

Q ss_pred             hcCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCce
Q psy8397          70 IDNPPIMFLDEPTTGL-DSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRT  148 (203)
Q Consensus        70 ~~~P~vLlLDEPt~gL-D~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t  148 (203)
                      ..+|+++++|||+.+| |+..+..+.+.++.+++.|.+++++||+++...                         .    
T Consensus       650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~-------------------------~----  700 (818)
T PRK13830        650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAE-------------------------R----  700 (818)
T ss_pred             CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHh-------------------------c----
Confidence            5799999999999999 799999999999999888999999999976421                         0    


Q ss_pred             EEEeecCchhHHHhhcCEEEEEeCCeEEeeCC
Q psy8397         149 IVCTIHQPSATIFEMVDHLYVIAEGHCVYKGS  180 (203)
Q Consensus       149 vi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~  180 (203)
                           ......+.+.|+..+++.+|++...|.
T Consensus       701 -----s~~a~~i~~~~~t~i~L~n~~a~~~~~  727 (818)
T PRK13830        701 -----SGIIDVLKESCPTKICLPNGAAREPGT  727 (818)
T ss_pred             -----CchHHHHHhcCCeEEECCCccccccch
Confidence                 001123567789888888888765543

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=98.19  E-value=5.7e-06  Score=72.61  Aligned_cols=87  Identities=21%  Similarity=0.260  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHH
Q psy8397          60 KKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAML  139 (203)
Q Consensus        60 rqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (203)
                      |.....+.+++++|+++++|||++      ...+..+++.+. .|.|+|+|||+.+.  .+.++|-            .+
T Consensus       182 k~~~~~~~i~~~~P~villDE~~~------~e~~~~l~~~~~-~G~~vI~ttH~~~~--~~~~~r~------------~~  240 (270)
T TIGR02858       182 KAEGMMMLIRSMSPDVIVVDEIGR------EEDVEALLEALH-AGVSIIATAHGRDV--EDLYKRP------------VF  240 (270)
T ss_pred             HHHHHHHHHHhCCCCEEEEeCCCc------HHHHHHHHHHHh-CCCEEEEEechhHH--HHHHhCh------------HH
Confidence            343445555668999999999974      333455555554 69999999998542  1111110            00


Q ss_pred             HHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         140 KALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       140 ~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                      +.+                .-..+++|+++|++|+  ..|+++++.
T Consensus       241 ~~l----------------~~~~~~~r~i~L~~~~--~~g~~~~i~  268 (270)
T TIGR02858       241 KEL----------------IENEAFERYVVLSRRK--GPGTVEAVY  268 (270)
T ss_pred             HHH----------------HhcCceEEEEEEecCC--CCCceeecc
Confidence            000                0136799999999887  677776653

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes

Probab=98.06  E-value=1e-05  Score=68.82  Aligned_cols=57  Identities=16%  Similarity=0.151  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhC-CCeEEEEecCCC
Q psy8397          59 QKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAM-LKALARG-GRTIVCTIHQPS  115 (203)
Q Consensus        59 qrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~-l~~l~~~-g~tvi~~tH~~~  115 (203)
                      +-++++-....+.+|+++|||||.+|+++.....+... ++.+.+. +.++|++||+++
T Consensus        96 e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~TH~~e  154 (218)
T cd03286          96 ELSETANILRHATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYHS  154 (218)
T ss_pred             HHHHHHHHHHhCCCCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence            45555555555689999999999999999999998876 7778776 999999999975

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PF13175 AAA_15: AAA ATPase domain

Probab=97.96  E-value=2.2e-05  Score=70.22  Aligned_cols=66  Identities=23%  Similarity=0.429  Sum_probs=56.1

Q ss_pred             cccCCCCCHHHHHHHHHHHHHh------cC-CC---EEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCC
Q psy8397          49 HTLCGRLSGGQKKRLSIALELI------DN-PP---IMFLDEPTTGLDSNSTNQCVAMLKALAR-GGRTIVCTIHQP  114 (203)
Q Consensus        49 ~~~v~~LSgGqrqrl~iA~aL~------~~-P~---vLlLDEPt~gLD~~~~~~i~~~l~~l~~-~g~tvi~~tH~~  114 (203)
                      ..+...+|.|.++.+.|+..+.      .+ +.   ++++|||-+.|.|..++.+++.|.++.. .+..||+|||-|
T Consensus       336 ~~~l~~~g~G~~~l~~~~~~~~~~~~~~~~~~~~~~illidEPE~~LHp~~q~~~~~~L~~~~~~~~~QiiitTHSp  412 (415)
T PF13175_consen  336 SIPLSQRGSGEQNLIYISLLINFLRENKESNNNNYNILLIDEPELHLHPQAQRKFIDFLKKLSKNNNIQIIITTHSP  412 (415)
T ss_pred             cCChhhcCcchHHHHHHHHHHHHHHHhhhccCcceeEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEECCCh
Confidence            4567789999999888877653      12 22   9999999999999999999999999987 588999999986

>cd01125 repA Hexameric Replicative Helicase RepA

Probab=97.94  E-value=1.2e-05  Score=68.37  Aligned_cols=82  Identities=21%  Similarity=0.273  Sum_probs=61.8

Q ss_pred             hHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHH----------------HHhcCCCEEEEeCCCC------CCCH
Q psy8397          30 DTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIAL----------------ELIDNPPIMFLDEPTT------GLDS   87 (203)
Q Consensus        30 ~~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~----------------aL~~~P~vLlLDEPt~------gLD~   87 (203)
                      ...+|+..+...+++.+..++...  .+|+.|++.+++                ....+|+++++| |++      .+|+
T Consensus        55 ~i~~Rl~~i~~~~~~~~~~~rl~~--~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviD-pl~~~~~~~~~d~  131 (239)
T cd01125          55 EIHRRLEAILQHLEPDDAGDRLFI--DSGRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVID-PLVSFHGVSENDN  131 (239)
T ss_pred             HHHHHHHHHHhhcCCcCcccceEE--eccCCCceecccCCcccccHHHHHHHHHHHhcCCCEEEEC-ChHHhCCCCcCCH
Confidence            356678888888876554444432  256767666554                345799999999 765      4799


Q ss_pred             HHHHHHHHHHHHHHhC-CCeEEEEecCC
Q psy8397          88 NSTNQCVAMLKALARG-GRTIVCTIHQP  114 (203)
Q Consensus        88 ~~~~~i~~~l~~l~~~-g~tvi~~tH~~  114 (203)
                      .....+++.|++++++ |.|||+++|..
T Consensus       132 ~~~~~~~~~L~~~a~~~g~avl~v~H~~  159 (239)
T cd01125         132 GAMDAVIKALRRIAAQTGAAILLVHHVR  159 (239)
T ss_pred             HHHHHHHHHHHHHHHHhCCEEEEEeccC
Confidence            9999999999998765 99999999986

RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=97.93  E-value=4.5e-06  Score=72.42  Aligned_cols=75  Identities=15%  Similarity=0.214  Sum_probs=59.9

Q ss_pred             CCCHHH--------HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHH-HHHHHHHHHhCCCeEEEEecCCCchhhhhhhc
Q psy8397          54 RLSGGQ--------KKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQ-CVAMLKALARGGRTIVCTIHQPSATIFEMVDH  124 (203)
Q Consensus        54 ~LSgGq--------rqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~-i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~  124 (203)
                      .+|||+        +||+++||++..+++|.+|  ||+.+|+.+... ++  +.++...+.|.|+.||.+.         
T Consensus       129 ~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~la---------  195 (249)
T cd01128         129 ILSGGVDANALHKPKRFFGAARNIEEGGSLTII--ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRLA---------  195 (249)
T ss_pred             CCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--eeheecCCCcccchH--HHHHhcCCCcEEEEchHHh---------
Confidence            579999        9999999999899999999  999999654443 44  5555545677788888753         


Q ss_pred             cccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEE
Q psy8397         125 LGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCV  176 (203)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~  176 (203)
                                                         ....+|.|.+++.|.+.
T Consensus       196 -----------------------------------~~~~~paI~vl~s~sr~  212 (249)
T cd01128         196 -----------------------------------ERRIFPAIDILKSGTRK  212 (249)
T ss_pred             -----------------------------------hCCCCCeEEEcCCCCcc
Confidence                                               35688999999999874

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes

Probab=97.88  E-value=4.4e-05  Score=65.15  Aligned_cols=57  Identities=21%  Similarity=0.206  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHhC-CCeEEEEecCCC
Q psy8397          59 QKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQC-VAMLKALARG-GRTIVCTIHQPS  115 (203)
Q Consensus        59 qrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i-~~~l~~l~~~-g~tvi~~tH~~~  115 (203)
                      +-+++.-...-+.+|+++|||||.+|.|+.....+ +..++.+.+. +.++|++||+++
T Consensus        97 e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~  155 (222)
T cd03287          97 ELSETSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFVTHYPS  155 (222)
T ss_pred             HHHHHHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEEcccHH
Confidence            45555555556679999999999999998777774 5688888876 899999999975

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=97.75  E-value=6.4e-05  Score=73.01  Aligned_cols=61  Identities=25%  Similarity=0.302  Sum_probs=46.3

Q ss_pred             cCCCCCHHHHHHHHHHHHHhc------CCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCeEEEEecCCC
Q psy8397          51 LCGRLSGGQKKRLSIALELID------NPPIMFLDEPTTGLDSNSTNQCVA-MLKALARGGRTIVCTIHQPS  115 (203)
Q Consensus        51 ~v~~LSgGqrqrl~iA~aL~~------~P~vLlLDEPt~gLD~~~~~~i~~-~l~~l~~~g~tvi~~tH~~~  115 (203)
                      ++..|||||||-++||-.++.      +.++ ++|||++.||+..+..+.+ .+..+   +.-||+.||+-+
T Consensus       548 ~~~~lS~Ge~~~~~la~~~al~~~~~~~~p~-iiD~p~~~lD~~~r~~l~~~~~~~~---~~QvIils~d~e  615 (650)
T TIGR03185       548 DKERLSAGERQILAIALLWGLAKVSGRRLPV-IIDTPLGRLDSSHRENLVVNYFPKA---SHQVLLLSTDEE  615 (650)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHhcCCCCCE-EEcCCccccChHHHHHHHHHHhhcc---CCeEEEEechHh
Confidence            466899999999876654432      3555 5699999999999999875 55543   567888889843

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=97.74  E-value=8.4e-05  Score=63.38  Aligned_cols=60  Identities=18%  Similarity=0.262  Sum_probs=45.4

Q ss_pred             CCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCC----CHHHHHHHHHHHHHHHhCCCeEEEEecC
Q psy8397          54 RLSGGQKKRLSIALELI----DNPPIMFLDEPTTGL----DSNSTNQCVAMLKALARGGRTIVCTIHQ  113 (203)
Q Consensus        54 ~LSgGqrqrl~iA~aL~----~~P~vLlLDEPt~gL----D~~~~~~i~~~l~~l~~~g~tvi~~tH~  113 (203)
                      .+|+++.++-.+.+.+-    .+|+++++||||+++    |+..++.+++.++.+++.|.|+++++|.
T Consensus        95 ~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~g~tvi~t~~~  162 (230)
T PRK08533         95 LLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSLNKVIILTANP  162 (230)
T ss_pred             cccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhCCCEEEEEecc
Confidence            36777655544444333    369999999999999    8888899999999998888877665543

>PRK06067 flagellar accessory protein FlaH; Validated

Probab=97.70  E-value=0.00027  Score=59.70  Aligned_cols=62  Identities=23%  Similarity=0.262  Sum_probs=49.6

Q ss_pred             CCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCC---CCHHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q psy8397          54 RLSGGQKKRLSIALELID--NPPIMFLDEPTTG---LDSNSTNQCVAMLKALARGGRTIVCTIHQPS  115 (203)
Q Consensus        54 ~LSgGqrqrl~iA~aL~~--~P~vLlLDEPt~g---LD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~  115 (203)
                      ..|.++++.+.....++.  +|+++++||||+.   .|......+++.++.+++.|.|+++++|...
T Consensus       100 ~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~~g~tvllt~~~~~  166 (234)
T PRK06067        100 WNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVDLGKTILITLHPYA  166 (234)
T ss_pred             cCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Confidence            457889999999999987  9999999999964   4555555666667777777999999999854

>PRK13891 conjugal transfer protein TrbE; Provisional

Probab=97.57  E-value=0.00012  Score=73.39  Aligned_cols=53  Identities=21%  Similarity=0.243  Sum_probs=48.5

Q ss_pred             HHHHHhcCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCCeEEEEecCCCch
Q psy8397          65 IALELIDNPPIMFLDEPTTGL-DSNSTNQCVAMLKALARGGRTIVCTIHQPSAT  117 (203)
Q Consensus        65 iA~aL~~~P~vLlLDEPt~gL-D~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~  117 (203)
                      |++++..+|+++++|||+.+| |+..+..+.+.++.+++.|.+++++||+++..
T Consensus       680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d~  733 (852)
T PRK13891        680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSDA  733 (852)
T ss_pred             HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence            577888999999999999999 79999999999999988899999999998754

>COG3910 Predicted ATPase [General function prediction only]

Probab=97.46  E-value=0.00026  Score=59.92  Aligned_cols=66  Identities=24%  Similarity=0.355  Sum_probs=54.8

Q ss_pred             cccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q psy8397          49 HTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPS  115 (203)
Q Consensus        49 ~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~  115 (203)
                      .+.....|.||-=.--+.+.+ ++--+.|||||-++|.|.-+..++..|+.+++.|.-+||.||-|-
T Consensus       124 ~~sLh~~SHGEsf~~i~~~rf-~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPi  189 (233)
T COG3910         124 GRSLHHMSHGESFLAIFHNRF-NGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPI  189 (233)
T ss_pred             CcchhhhccchHHHHHHHHHh-ccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChh
Confidence            344456799996554444443 566899999999999999999999999999999999999999974

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=97.37  E-value=0.00092  Score=51.34  Aligned_cols=63  Identities=21%  Similarity=0.296  Sum_probs=49.0

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q psy8397          53 GRLSGGQKKRLSIALELIDNPPIMFLDEPTT----------GLDSNSTNQCVAMLKALARGGRTIVCTIHQPS  115 (203)
Q Consensus        53 ~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~----------gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~  115 (203)
                      ...+.+..++...+.+...+|+++++|||++          +.+......+.+++....+.+.|+|+++|...
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~  138 (165)
T cd01120          66 DDPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPS  138 (165)
T ss_pred             CCCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCC
Confidence            3456667777888999999999999999994          45555566666666666666999999999875

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=97.36  E-value=0.00035  Score=72.10  Aligned_cols=64  Identities=23%  Similarity=0.397  Sum_probs=56.8

Q ss_pred             cCCCCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q psy8397          51 LCGRLSGGQKKRLSIALELI----DNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPS  115 (203)
Q Consensus        51 ~v~~LSgGqrqrl~iA~aL~----~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~  115 (203)
                      .+..||||||-..+||.-++    ...|+.+|||-=++||..+...+.++|+++. .+.-.|+|||...
T Consensus      1063 ~l~~LSGGEKsLtAlAllFAi~~~~PaPf~vLDEVDAaLD~~Nv~r~~~~i~e~s-~~sQFIvIThr~~ 1130 (1163)
T COG1196        1063 SLSLLSGGEKSLTALALLFAIQKYRPAPFYVLDEVDAALDDANVERVARLIKEMS-KETQFIVITHRKG 1130 (1163)
T ss_pred             chhhcCCcHHHHHHHHHHHHHHhhCCCCeeeeccchhhccHHHHHHHHHHHHHhC-cCCeEEEEEcChH
Confidence            34469999999999998765    4678999999999999999999999999988 7889999999963

>KOG0964|consensus

Probab=97.35  E-value=9.7e-05  Score=73.89  Aligned_cols=62  Identities=27%  Similarity=0.458  Sum_probs=53.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCC
Q psy8397          52 CGRLSGGQKKRLSIALELID----NPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQP  114 (203)
Q Consensus        52 v~~LSgGqrqrl~iA~aL~~----~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~  114 (203)
                      +.+||||||--|+||..++.    .++++||||--++||+.++..+.++|++|... .-.|+||-.|
T Consensus      1095 m~QLSGGQKsvvALaLIFaIQrcDPAPFYlfDEIDAaLDaQyR~aVa~lIkelS~~-aQFI~TTFRp 1160 (1200)
T KOG0964|consen 1095 MEQLSGGQKSVVALALIFAIQRCDPAPFYLFDEIDAALDAQYRTAVADLIKELSDS-AQFITTTFRP 1160 (1200)
T ss_pred             HHHhcCchHHHHHHHHHHHHHhcCCcchhhHhHHhhhccHHHHHHHHHHHHHHhhc-cceEeecccH
Confidence            34799999999999988764    46899999999999999999999999999854 5666666665

>COG4637 Predicted ATPase [General function prediction only]

Probab=97.31  E-value=0.00065  Score=61.33  Aligned_cols=61  Identities=28%  Similarity=0.565  Sum_probs=55.3

Q ss_pred             CCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q psy8397          54 RLSGGQKKRLSIALELID--NPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPS  115 (203)
Q Consensus        54 ~LSgGqrqrl~iA~aL~~--~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~  115 (203)
                      .||-|+.+-+++|.+|..  .|.+++||||-++|-|..-..+...+++.++.+ -|+++||-..
T Consensus       270 eLSDGTlRfl~l~t~Llsp~~p~ll~ldEPE~sLHP~lL~~La~~~~sAak~s-Qv~VsTHS~r  332 (373)
T COG4637         270 ELSDGTLRFLALATLLLSPRPPPLLLLDEPETSLHPDLLPALAELMRSAAKRS-QVIVSTHSPR  332 (373)
T ss_pred             hccccHHHHHHHHHHHcCCCCCceeEecCcccccCHhHHHHHHHHHHHhhccc-eEEEEeCCHH
Confidence            799999999999999985  688999999999999999999999999877666 8999999753

>PF13166 AAA_13: AAA domain

Probab=97.16  E-value=0.0016  Score=63.32  Aligned_cols=64  Identities=25%  Similarity=0.349  Sum_probs=55.8

Q ss_pred             CCCCCHHHHHHHHHHHHH--hc-------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHH--hCCCeEEEEecCCC
Q psy8397          52 CGRLSGGQKKRLSIALEL--ID-------NPPIMFLDEPTTGLDSNSTNQCVAMLKALA--RGGRTIVCTIHQPS  115 (203)
Q Consensus        52 v~~LSgGqrqrl~iA~aL--~~-------~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~--~~g~tvi~~tH~~~  115 (203)
                      ...||-|||.-++||-=|  +.       +..++++|-|-|.||...+..+...|+++.  ...+-||+-||++.
T Consensus       498 ~~~LSEGEk~~iAf~yFla~l~~~~~~~~~~~iiViDDPISSLD~~~~~~v~~~l~~~~~~~~~~QviIlTHn~~  572 (712)
T PF13166_consen  498 AKILSEGEKRAIAFAYFLAELKEDDEDINKKKIIVIDDPISSLDHNRRFGVASRLKEEIKNSKFRQVIILTHNLY  572 (712)
T ss_pred             cCccCHHHHHHHHHHHHHHHHhhcccccCcCceEEECCCCCCCCHHHHHHHHHHHHHHhhcCCcceEEEEeCcHH
Confidence            457999999999998633  33       678999999999999999999999999986  56789999999975

>PRK07721 fliI flagellum-specific ATP synthase; Validated

Probab=97.12  E-value=0.0013  Score=61.60  Aligned_cols=86  Identities=17%  Similarity=0.213  Sum_probs=61.2

Q ss_pred             CCCCHHHHHHHHHHH-----HHh-cCCC-EEEEe-----------------CC--CCCCCHHHHHHHHHHHHHHHh--CC
Q psy8397          53 GRLSGGQKKRLSIAL-----ELI-DNPP-IMFLD-----------------EP--TTGLDSNSTNQCVAMLKALAR--GG  104 (203)
Q Consensus        53 ~~LSgGqrqrl~iA~-----aL~-~~P~-vLlLD-----------------EP--t~gLD~~~~~~i~~~l~~l~~--~g  104 (203)
                      .+=|-++|-+...+.     -+. ..-+ +|++|                 ||  |+|+||.....+.+++.++..  +|
T Consensus       222 ~~~~~~~r~~~~~~a~~iAEyfr~~g~~Vll~~Dsltr~A~A~rEisl~~ge~P~~~G~dp~~~~~l~~ller~~~~~~G  301 (438)
T PRK07721        222 SDQPALMRIKGAYTATAIAEYFRDQGLNVMLMMDSVTRVAMAQREIGLAVGEPPTTKGYTPSVFAILPKLLERTGTNASG  301 (438)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeChHHHHHHHHHHHHhcCCCCccccCCHHHHHHHHHHHHHhcCCCCC
Confidence            355667776654332     222 2223 56778                 76  679999999999999999873  45


Q ss_pred             C-----eEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeC
Q psy8397         105 R-----TIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKG  179 (203)
Q Consensus       105 ~-----tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g  179 (203)
                      .     ||++.+|+++                                             ..+||++.++.+|+++.++
T Consensus       302 sIT~~~TVlv~~hdm~---------------------------------------------e~i~d~v~~i~dG~Ivls~  336 (438)
T PRK07721        302 SITAFYTVLVDGDDMN---------------------------------------------EPIADTVRGILDGHFVLDR  336 (438)
T ss_pred             CeeeEEEEEEECCCCC---------------------------------------------chhhhhEEEecCEEEEEec
Confidence            4     6666666653                                             2679999999999999999


Q ss_pred             Cccc
Q psy8397         180 SSAN  183 (203)
Q Consensus       180 ~~~~  183 (203)
                      +.++
T Consensus       337 ~la~  340 (438)
T PRK07721        337 QLAN  340 (438)
T ss_pred             cHHH
Confidence            8764

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=96.91  E-value=8.2e-05  Score=70.01  Aligned_cols=67  Identities=16%  Similarity=0.123  Sum_probs=52.9

Q ss_pred             HHHcCCcccccccCCCCCHHHHHHHHHH--HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q psy8397          39 LDTIGLVLSKHTLCGRLSGGQKKRLSIA--LELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPS  115 (203)
Q Consensus        39 L~~~~L~~~~~~~v~~LSgGqrqrl~iA--~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~  115 (203)
                      ++.+++....++....+|+|++|||.|+  .++...|+..          +..++.++++++.+++.|+|+|+|+|+++
T Consensus       100 ~~~~~l~~~l~~i~~~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r~~l~~Li~~L~~~g~TvLLtsh~~~  168 (484)
T TIGR02655       100 VGGFDLSALIERINYAIRKYKAKRVSIDSVTAVFQQYDAV----------SVVRREIFRLVARLKQIGVTTVMTTERIE  168 (484)
T ss_pred             cccCCHHHHHHHHHHHHHHhCCcEEEEeehhHhhhhcCch----------HHHHHHHHHHHHHHHHCCCEEEEEecCcc
Confidence            3445666666777788999999999999  5666665433          56788899999999888999999999975

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=96.84  E-value=0.0054  Score=58.92  Aligned_cols=60  Identities=28%  Similarity=0.541  Sum_probs=46.7

Q ss_pred             CCCHHHHHHHHHHHH--HhcC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCC
Q psy8397          54 RLSGGQKKRLSIALE--LIDN--PPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQP  114 (203)
Q Consensus        54 ~LSgGqrqrl~iA~a--L~~~--P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~  114 (203)
                      -.||||--|++||--  +...  .+.|++||-=+|+.-.....+-+.|++|.+ ..-|+||||.|
T Consensus       431 vASGGELSRimLAlk~i~~~~~~~ptlIFDEVD~GIsG~~A~aVg~~L~~Ls~-~~QVl~VTHlP  494 (557)
T COG0497         431 VASGGELSRIMLALKVILSRKDDTPTLIFDEVDTGISGRVAQAVGKKLRRLSE-HHQVLCVTHLP  494 (557)
T ss_pred             hcchhHHHHHHHHHHHHHhccCCCCeEEEecccCCCChHHHHHHHHHHHHHhc-CceEEEEecHH
Confidence            479999999999874  3333  569999999999999999999999999863 33444444443

>PRK13873 conjugal transfer ATPase TrbE; Provisional

Probab=96.78  E-value=0.0021  Score=64.08  Aligned_cols=48  Identities=21%  Similarity=0.252  Sum_probs=43.0

Q ss_pred             HhcCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHhCCCeEEEEecCCCc
Q psy8397          69 LIDNPPIMFLDEPTTGLD-SNSTNQCVAMLKALARGGRTIVCTIHQPSA  116 (203)
Q Consensus        69 L~~~P~vLlLDEPt~gLD-~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~  116 (203)
                      +-.+|+++++|||+.+|| +..+..+.+.++.+++.|.+++++||.+++
T Consensus       632 ~~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d  680 (811)
T PRK13873        632 FDGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRKKNVSVIFATQSLAD  680 (811)
T ss_pred             hcCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHH
Confidence            456899999999999999 778888999999998889999999999864

>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11

Probab=96.62  E-value=0.0017  Score=57.60  Aligned_cols=47  Identities=19%  Similarity=0.256  Sum_probs=36.5

Q ss_pred             HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q psy8397          62 RLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPS  115 (203)
Q Consensus        62 rl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~  115 (203)
                      .-.++.+|-++|+++++|||.+       .+.++.++.+...+.+++.|+|..+
T Consensus       208 ~~~l~~~Lr~~pd~ii~gE~r~-------~e~~~~l~a~~~g~~~~i~T~Ha~~  254 (308)
T TIGR02788       208 KDLLQSCLRMRPDRIILGELRG-------DEAFDFIRAVNTGHPGSITTLHAGS  254 (308)
T ss_pred             HHHHHHHhcCCCCeEEEeccCC-------HHHHHHHHHHhcCCCeEEEEEeCCC
Confidence            3456778999999999999996       4567777777644456789999876

The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.

>TIGR00152 dephospho-CoA kinase

Probab=96.50  E-value=0.0011  Score=54.18  Aligned_cols=83  Identities=10%  Similarity=0.052  Sum_probs=71.2

Q ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCc-hhhhhhhccccCCCchhHH
Q psy8397          57 GGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSA-TIFEMVDHLGLDSNSTNQC  135 (203)
Q Consensus        57 gGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~-~~~~~~~~~~~~~~~~~~~  135 (203)
                      .|+-+|..||..+..+|+.+..+|  +.+||..++.+.+.+.+...+|.+||+.+|.+.+ .+.+.|+.+.+...+....
T Consensus        60 ~g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~~~~~D~vv~V~~~~~~~  137 (188)
T TIGR00152        60 DGELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKLRSLCDRVIVVDVSPQLQ  137 (188)
T ss_pred             CCCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCcHHhCCEEEEEECCHHHH
Confidence            378899999999999999988776  8899999999999999887667899999999854 4678899998888888877


Q ss_pred             HHHHHH
Q psy8397         136 VAMLKA  141 (203)
Q Consensus       136 ~~~~~~  141 (203)
                      .+.+..
T Consensus       138 ~~Rl~~  143 (188)
T TIGR00152       138 LERLMQ  143 (188)
T ss_pred             HHHHHH
Confidence            777754

This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.

>KOG0962|consensus

Probab=96.48  E-value=0.0052  Score=63.61  Aligned_cols=61  Identities=34%  Similarity=0.478  Sum_probs=51.1

Q ss_pred             CCCCHHHH------HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH----hC-CCeEEEEecC
Q psy8397          53 GRLSGGQK------KRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALA----RG-GRTIVCTIHQ  113 (203)
Q Consensus        53 ~~LSgGqr------qrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~----~~-g~tvi~~tH~  113 (203)
                      |..|-|||      =|+++|-.+..+..+|=|||||++||-.....+...+....    ++ ..-.|++|||
T Consensus      1182 GRcSAGQKvLAsliIRLALAEtf~snCgvLALDEPTTNLD~~niesLa~~L~~II~~rr~q~nfqLiVITHD 1253 (1294)
T KOG0962|consen 1182 GRCSAGQKVLASLIIRLALAETFGSNCGVLALDEPTTNLDRENIESLAKALSRIIEERRRQRNFQLIVITHD 1253 (1294)
T ss_pred             cCccchHHHHHHHHHHHHHHHHHhhccccccccCCccccCHhHHHHHHHHHHHHHHHHhhccCcceeeeehH
Confidence            35799997      48889999999999999999999999999888877665543    22 6789999999

>PRK05399 DNA mismatch repair protein MutS; Provisional

Probab=96.46  E-value=0.0091  Score=60.15  Aligned_cols=62  Identities=19%  Similarity=0.123  Sum_probs=49.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhc--CCCEEEEeCC---CCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCC
Q psy8397          52 CGRLSGGQKKRLSIALELID--NPPIMFLDEP---TTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPS  115 (203)
Q Consensus        52 v~~LSgGqrqrl~iA~aL~~--~P~vLlLDEP---t~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~  115 (203)
                      ...+|-=|.....++..|-.  +++++|||||   |+.+|.  ....+.+++.+.+. |.++|++||+.+
T Consensus       664 ~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg--~aia~aile~l~~~~~~~~l~aTH~~e  731 (854)
T PRK05399        664 ASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDG--LSIAWAVAEYLHDKIGAKTLFATHYHE  731 (854)
T ss_pred             ccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchh--HHHHHHHHHHHHhcCCceEEEEechHH
Confidence            34577777888888887765  9999999999   888884  34567788888776 689999999943

>PRK13898 type IV secretion system ATPase VirB4; Provisional

Probab=96.43  E-value=0.0054  Score=61.09  Aligned_cols=49  Identities=18%  Similarity=0.215  Sum_probs=44.4

Q ss_pred             HHhcCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHhCCCeEEEEecCCCc
Q psy8397          68 ELIDNPPIMFLDEPTTGLD-SNSTNQCVAMLKALARGGRTIVCTIHQPSA  116 (203)
Q Consensus        68 aL~~~P~vLlLDEPt~gLD-~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~  116 (203)
                      .+..+|.++++|||..+|| +..+..+.+.++.+++.|..++++||.++.
T Consensus       638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d  687 (800)
T PRK13898        638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVED  687 (800)
T ss_pred             HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence            4567999999999999999 888889999999998889999999999864

>KOG0933|consensus

Probab=96.32  E-value=0.0021  Score=64.79  Aligned_cols=60  Identities=27%  Similarity=0.351  Sum_probs=49.3

Q ss_pred             cCCCCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEe
Q psy8397          51 LCGRLSGGQKKRLSIALELID----NPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTI  111 (203)
Q Consensus        51 ~v~~LSgGqrqrl~iA~aL~~----~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~t  111 (203)
                      ...+||||||-.|+|+..|++    .++++||||--++||....+.+-.+|+.-- .+.-.|+||
T Consensus      1079 SL~ELSGGQRSLVALsLIlamL~fkPAPlYILDEVDAALDLSHTQNIG~mIkthF-~~sQFIVVS 1142 (1174)
T KOG0933|consen 1079 SLSELSGGQRSLVALSLILAMLKFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-THSQFIVVS 1142 (1174)
T ss_pred             HHHHhcCchHHHHHHHHHHHHHcCCCCceeehhhhHHhhcchhhhhHHHHHHhhC-CCCeEEEEE
Confidence            345799999999998877664    678999999999999999999999998744 245566665

>PRK06793 fliI flagellum-specific ATP synthase; Validated

Probab=95.97  E-value=0.0073  Score=56.52  Aligned_cols=107  Identities=21%  Similarity=0.210  Sum_probs=71.6

Q ss_pred             ccCCCCCHHHHHHHHHHHHHh-------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhh
Q psy8397          50 TLCGRLSGGQKKRLSIALELI-------DNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMV  122 (203)
Q Consensus        50 ~~v~~LSgGqrqrl~iA~aL~-------~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~  122 (203)
                      ....+.|.|+|+|+..+.+.+       .++-++++|+||.+.|+.  +++...+.+.-..|.+..+.||- .    +++
T Consensus       217 ~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr~a~A~--reisl~~~e~p~~G~~~~~~s~l-~----~L~  289 (432)
T PRK06793        217 VATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADAR--RSVDIAVKELPIGGKTLLMESYM-K----KLL  289 (432)
T ss_pred             EECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchHHHHHHH--HHHHHHhcCCCCCCeeeeeeccc-h----hHH
Confidence            345688999999999999888       789999999999999985  66666666666568888888883 2    233


Q ss_pred             hccccCCCchhHHHHHHHHhhhCCceEEEee----cCchhHHHhhcCEEEEEeCCeEEeeCC
Q psy8397         123 DHLGLDSNSTNQCVAMLKALARGGRTIVCTI----HQPSATIFEMVDHLYVIAEGHCVYKGS  180 (203)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~----h~~~~~i~~~~d~v~vl~~G~i~~~g~  180 (203)
                      +|.+..              .....|.+-+.    .|++   .-++|.+.-+-+|+|+.+-.
T Consensus       290 ERag~~--------------~~GSiT~~~tvlv~~dD~~---dpI~d~~~si~DG~ivLsr~  334 (432)
T PRK06793        290 ERSGKT--------------QKGSITGIYTVLVDGDDLN---GPVPDLARGILDGHIVLKRE  334 (432)
T ss_pred             HHhccC--------------CCcceEEEEEEEecCCCCC---CcchHHhhhhcceEEEEcHH
Confidence            333221              11223333222    2322   23566777777888876543

>PRK08699 DNA polymerase III subunit delta'; Validated

Probab=95.94  E-value=0.017  Score=52.00  Aligned_cols=63  Identities=17%  Similarity=0.239  Sum_probs=48.6

Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCc---hhhhhhhccccCCCchhHHHHHH
Q psy8397          76 MFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSA---TIFEMVDHLGLDSNSTNQCVAML  139 (203)
Q Consensus        76 LlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~---~~~~~~~~~~~~~~~~~~~~~~~  139 (203)
                      +++|||+.+||+.++..+++.|.+.. .+.++|++||+++.   .+..+|-.+-+..-+..++.+.+
T Consensus       116 V~iiEp~~~Ld~~a~naLLk~LEep~-~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L  181 (325)
T PRK08699        116 VILIHPAESMNLQAANSLLKVLEEPP-PQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYL  181 (325)
T ss_pred             EEEEechhhCCHHHHHHHHHHHHhCc-CCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHH
Confidence            55789999999999999999999975 57899999999764   33555666766555555555555

>COG1195 RecF Recombinational DNA repair ATPase (RecF pathway) [DNA replication, recombination, and repair]

Probab=95.26  E-value=0.052  Score=49.83  Aligned_cols=56  Identities=29%  Similarity=0.392  Sum_probs=43.9

Q ss_pred             CCCHHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecC
Q psy8397          54 RLSGGQKKRLSIALELI---------DNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQ  113 (203)
Q Consensus        54 ~LSgGqrqrl~iA~aL~---------~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~  113 (203)
                      -+|-||++-+.+|.-|+         .+++||+||+-++-||..-+..+++. .+   .+.-+++|+=+
T Consensus       275 ~~S~Gqqk~l~laLrLAe~~l~~~~~g~~PILLLDDv~seLD~~Rr~~Ll~~-~~---~~~Q~fvT~t~  339 (363)
T COG1195         275 FASQGQQKTLALALRLAEIELLREETGEYPILLLDDVASELDDGRRAALLDT-IE---LGVQVFVTTTD  339 (363)
T ss_pred             hcCcchHHHHHHHHHHHHHHHHHHhcCCCCEEEechhhHhhCHHHHHHHHhh-cc---cCCeEEEEccC
Confidence            48999999999887665         47899999999999999999998887 32   23445555443

>COG4694 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.13  E-value=0.066  Score=51.70  Aligned_cols=65  Identities=25%  Similarity=0.436  Sum_probs=56.1

Q ss_pred             cccCCC-CCHHHHHHHHHHHHHh---cCC-----CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecC
Q psy8397          49 HTLCGR-LSGGQKKRLSIALELI---DNP-----PIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQ  113 (203)
Q Consensus        49 ~~~v~~-LSgGqrqrl~iA~aL~---~~P-----~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~  113 (203)
                      +..+++ ||-|++.-++++--|+   -+|     +++++|.|.+.+|....-..+..+++...+++-||+-||+
T Consensus       523 g~~~gn~LSEGekt~iaf~yflakL~enpd~~k~kvvViDDPisSfDsn~lf~~~~~v~~~~t~~kQviVLtHn  596 (758)
T COG4694         523 GQLVGNTLSEGEKTFIAFLYFLAKLKENPDISKNKVVVIDDPISSFDSNILFRVSVLVKEEKTNIKQVIVLTHN  596 (758)
T ss_pred             CccccccccccchhHHHHHHHHHHHHhCcccccCeeEEecCCccccchhHHHHHHHHHHHHHhCceEEEEEecc
Confidence            444555 9999999998775544   355     4899999999999999999999999999999999999999

>cd01131 PilT Pilus retraction ATPase PilT

Probab=95.01  E-value=0.063  Score=44.50  Aligned_cols=55  Identities=22%  Similarity=0.359  Sum_probs=39.9

Q ss_pred             HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhcccc
Q psy8397          64 SIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGL  127 (203)
Q Consensus        64 ~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~  127 (203)
                      .++++|..+|+++++|||.   |+....   ..+ +.+..|.+++.|+|..+.  .+.++|+..
T Consensus        66 ~i~~aLr~~pd~ii~gEir---d~e~~~---~~l-~~a~~G~~v~~t~Ha~~~--~~~~~Rl~~  120 (198)
T cd01131          66 ALKAALRQDPDVILVGEMR---DLETIR---LAL-TAAETGHLVMSTLHTNSA--AKTIDRIID  120 (198)
T ss_pred             HHHHHhcCCcCEEEEcCCC---CHHHHH---HHH-HHHHcCCEEEEEecCCcH--HHHHhHHHh
Confidence            5788999999999999996   554322   223 345679999999999874  355666643

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>KOG0996|consensus

Probab=94.56  E-value=0.034  Score=57.22  Aligned_cols=53  Identities=26%  Similarity=0.331  Sum_probs=45.9

Q ss_pred             cccCCCCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q psy8397          49 HTLCGRLSGGQKKRLSIALELID----NPPIMFLDEPTTGLDSNSTNQCVAMLKALA  101 (203)
Q Consensus        49 ~~~v~~LSgGqrqrl~iA~aL~~----~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~  101 (203)
                      -+.+.+||||+|-.-+||..++.    ..+++++||--++||....--+...|++..
T Consensus      1190 WK~I~NLSGGEKTLSSLALVFALH~YkPTPlYVMDEIDAALDfkNVSIVanYIkErT 1246 (1293)
T KOG0996|consen 1190 WKNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVANYIKERT 1246 (1293)
T ss_pred             hhhcccCCcchhHHHHHHHHHHHHccCCCCceehhhHHHhhccccchhHHHHHHHhc
Confidence            34567899999999999998874    568999999999999999999999998754

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=94.51  E-value=0.43  Score=34.49  Aligned_cols=63  Identities=25%  Similarity=0.276  Sum_probs=49.0

Q ss_pred             cCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH------HHHHHHhCCCeEEEEecC
Q psy8397          51 LCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVA------MLKALARGGRTIVCTIHQ  113 (203)
Q Consensus        51 ~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~------~l~~l~~~g~tvi~~tH~  113 (203)
                      .....++++..+..++++--..|.++++||+..-.+.........      ........+..+|+++|.
T Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  125 (148)
T smart00382       57 KKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND  125 (148)
T ss_pred             cCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence            344578888899999998888899999999999999888776654      223333457899999984

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>KOG0018|consensus

Probab=94.41  E-value=0.043  Score=55.98  Aligned_cols=61  Identities=21%  Similarity=0.352  Sum_probs=50.0

Q ss_pred             ccccCCCCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEe
Q psy8397          48 KHTLCGRLSGGQKKRLSIALELID----NPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTI  111 (203)
Q Consensus        48 ~~~~v~~LSgGqrqrl~iA~aL~~----~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~t  111 (203)
                      +.+++..||||+|--.+||.-++.    .+++.+|||--++||.....++...|+   ..+.-.|++|
T Consensus      1045 RFr~m~~LSGGEKTvAaLALLFaihsy~PaPFfvlDEiDAALDntNi~kvasyIr---~~~~Q~IvIS 1109 (1141)
T KOG0018|consen 1045 RFRPMDNLSGGEKTVAALALLFAIHSYKPAPFFVLDEIDAALDNTNIGKVASYIR---SSNFQFIVIS 1109 (1141)
T ss_pred             ccCchhhcCccHHHHHHHHHHHHhccCCCCCceehhhHHHHhhhccHHHHHHHHh---cCCceEEEEe
Confidence            455667899999999999988774    468999999999999999999999999   4455455554

>PF00488 MutS_V: MutS domain V C-terminus

Probab=94.41  E-value=0.22  Score=42.67  Aligned_cols=62  Identities=16%  Similarity=0.183  Sum_probs=43.5

Q ss_pred             CCCHHHHHHHHHHHHH--hcCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHh-CCCeEEEEecCCC
Q psy8397          54 RLSGGQKKRLSIALEL--IDNPPIMFLDEPTTGLDSNSTNQCVA-MLKALAR-GGRTIVCTIHQPS  115 (203)
Q Consensus        54 ~LSgGqrqrl~iA~aL--~~~P~vLlLDEPt~gLD~~~~~~i~~-~l~~l~~-~g~tvi~~tH~~~  115 (203)
                      .+|.=+.-...++..+  +.+-.++|+||+..|=++.....+.. +++.+.+ .+..++++||+.+
T Consensus       102 ~~S~F~~E~~~~~~il~~~~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~~~  167 (235)
T PF00488_consen  102 GLSTFMAEMKRLSSILRNATEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATHFHE  167 (235)
T ss_dssp             SSSHHHHHHHHHHHHHHH--TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-GG
T ss_pred             ccccHHHhHHHHHhhhhhcccceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEeccch
Confidence            4665444444444444  56777999999999999999888765 6677887 4899999999975

; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....

>PF13514 AAA_27: AAA domain

Probab=94.00  E-value=0.12  Score=53.52  Aligned_cols=63  Identities=27%  Similarity=0.433  Sum_probs=47.6

Q ss_pred             cCCCCCHHHHH------HHHHHHHH-hcCCCE-EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecC
Q psy8397          51 LCGRLSGGQKK------RLSIALEL-IDNPPI-MFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQ  113 (203)
Q Consensus        51 ~v~~LSgGqrq------rl~iA~aL-~~~P~v-LlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~  113 (203)
                      .+..||+|.+=      |++++..+ -.++++ +|+|+++.+.|..-...++++|.++.+++.-|++|-|.
T Consensus      1022 ~~~~LS~GT~dQLYLALRLA~~e~~~~~~~~lP~IlDD~fvnfDd~R~~~~l~~L~~ls~~~QVI~FTch~ 1092 (1111)
T PF13514_consen 1022 PVEELSRGTRDQLYLALRLALAELLAEQGEPLPFILDDIFVNFDDERARAALELLAELSRRRQVIYFTCHE 1092 (1111)
T ss_pred             eHHHhCHHHHHHHHHHHHHHHHHHHHhCCCCCcEEeeCCccccCHHHHHHHHHHHHHhccCCeEEEEeccH
Confidence            34579999985      55555566 334554 99999999999999999999999998765455555444

>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family

Probab=93.93  E-value=0.14  Score=42.76  Aligned_cols=44  Identities=14%  Similarity=0.126  Sum_probs=34.7

Q ss_pred             cCCCEEEEeC-----CCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCC
Q psy8397          71 DNPPIMFLDE-----PTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQP  114 (203)
Q Consensus        71 ~~P~vLlLDE-----Pt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~  114 (203)
                      .+++.+++|-     |+.+.|...+..+.++++.+++.|.|+++++|.-
T Consensus       106 ~~~~~vVIDsls~l~~~~~~~~~~r~~l~~l~~~lk~~~~tvll~s~~~  154 (224)
T TIGR03880       106 LGASRVVIDPISLLETLFDDDAERRTELFRFYSSLRETGVTTILTSEAD  154 (224)
T ss_pred             hCCCEEEEcChHHHhhhcCCHHHHHHHHHHHHHHHHhCCCEEEEEEccc
Confidence            4689999993     3345566677888889999988899999999963

This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.

>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=93.78  E-value=0.19  Score=47.23  Aligned_cols=94  Identities=15%  Similarity=0.242  Sum_probs=62.8

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCch
Q psy8397          53 GRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNST  132 (203)
Q Consensus        53 ~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~  132 (203)
                      .+=||-.-|=..|..||=...++||+||=|++--.--+...++.|-.-.++..|                          
T Consensus       321 ~~ASGSTSqAAnI~EAlE~Ga~~LLiDEDtsATNfmiRD~rMq~Lv~k~kEPIT--------------------------  374 (448)
T PF09818_consen  321 ENASGSTSQAANIMEALEAGARLLLIDEDTSATNFMIRDERMQALVSKEKEPIT--------------------------  374 (448)
T ss_pred             cCCCchHHHHHHHHHHHHcCCCEEEEcCcccchheeehhHHHHHhhccCCCCcc--------------------------
Confidence            457999999999999999999999999999876554443333322211111111                          


Q ss_pred             hHHHHHHHHh-hhCCceEEEeecCchhHHHhhcCEEEEEeCCe
Q psy8397         133 NQCVAMLKAL-ARGGRTIVCTIHQPSATIFEMVDHLYVIAEGH  174 (203)
Q Consensus       133 ~~~~~~~~~~-~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~  174 (203)
                       -....++.+ ++.|.+.|+++.=.. ..+..+|+|++|++=+
T Consensus       375 -Pfidrvr~l~~~~GvStIlV~Ggsg-dy~~vAD~Vi~Md~Y~  415 (448)
T PF09818_consen  375 -PFIDRVRSLYEKLGVSTILVVGGSG-DYFDVADRVIMMDEYR  415 (448)
T ss_pred             -hHHHHHHHHHHHcCceEEEEeccch-hhHhhCCEEEEecCcc
Confidence             122334444 566776666665544 4688999999999855

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.

>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP

Probab=93.52  E-value=0.15  Score=41.49  Aligned_cols=65  Identities=22%  Similarity=0.228  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHh--cCCCEEEEeCCCCC--CCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhcc
Q psy8397          60 KKRLSIALELI--DNPPIMFLDEPTTG--LDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHL  125 (203)
Q Consensus        60 rqrl~iA~aL~--~~P~vLlLDEPt~g--LD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~  125 (203)
                      ++-+..|+..+  .+.++++|||-...  ++......+.++|+. +.++..||+|.+++.+++.+++|-+
T Consensus        81 ~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~-rp~~~evIlTGr~~p~~l~e~AD~V  149 (159)
T cd00561          81 AEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKA-KPEDLELVLTGRNAPKELIEAADLV  149 (159)
T ss_pred             HHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHc-CCCCCEEEEECCCCCHHHHHhCcee
Confidence            34455566666  45799999999865  566667788888775 4458899999999999888877665

This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.

>TIGR01420 pilT_fam pilus retraction protein PilT

Probab=93.14  E-value=0.23  Score=44.77  Aligned_cols=54  Identities=19%  Similarity=0.383  Sum_probs=40.4

Q ss_pred             HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhcc
Q psy8397          63 LSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHL  125 (203)
Q Consensus        63 l~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~  125 (203)
                      -+++++|-++|+++++||+.   |+.+....++    .+..|.+++.|.|-.+.  ...++|+
T Consensus       186 ~~l~~~lr~~pd~i~vgEir---d~~~~~~~l~----aa~tGh~v~~T~Ha~~~--~~~~~Rl  239 (343)
T TIGR01420       186 NALRAALREDPDVILIGEMR---DLETVELALT----AAETGHLVFGTLHTNSA--AQTIERI  239 (343)
T ss_pred             HHHHHhhccCCCEEEEeCCC---CHHHHHHHHH----HHHcCCcEEEEEcCCCH--HHHHHHH
Confidence            34778899999999999997   8777654333    35679999999999764  2445555

This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.

>PRK14088 dnaA chromosomal replication initiation protein; Provisional

Probab=93.05  E-value=0.24  Score=46.27  Aligned_cols=45  Identities=13%  Similarity=0.297  Sum_probs=35.8

Q ss_pred             cCCCEEEEeCCCCCCCHH-HHHHHHHHHHHHHhCCCeEEEEe-cCCC
Q psy8397          71 DNPPIMFLDEPTTGLDSN-STNQCVAMLKALARGGRTIVCTI-HQPS  115 (203)
Q Consensus        71 ~~P~vLlLDEPt~gLD~~-~~~~i~~~l~~l~~~g~tvi~~t-H~~~  115 (203)
                      .+|++|++|||...++.. ....++..+..+...|+.+|++| |.|.
T Consensus       193 ~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~  239 (440)
T PRK14088        193 KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQ  239 (440)
T ss_pred             hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHH
Confidence            379999999999988765 45678899999888787787776 5543

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=92.95  E-value=0.35  Score=38.63  Aligned_cols=64  Identities=16%  Similarity=0.195  Sum_probs=46.5

Q ss_pred             HHHHHHHcCCc-ccccccCCCCCHHHHHHHH--HHHHHhc-CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q psy8397          35 VDDILDTIGLV-LSKHTLCGRLSGGQKKRLS--IALELID-NPPIMFLDEPTTGLDSNSTNQCVAMLKALAR  102 (203)
Q Consensus        35 v~~~L~~~~L~-~~~~~~v~~LSgGqrqrl~--iA~aL~~-~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~  102 (203)
                      +.++++..++. -..-.++..+|+|+++++.  +++.+-. +++++    |+|++|......+++.|.++.+
T Consensus       127 i~~~l~~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~----~~Sa~~~~gi~~l~~~i~~~~~  194 (196)
T PRK00454        127 MIEWLKEYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVI----LFSSLKKQGIDELRAAIAKWLA  194 (196)
T ss_pred             HHHHHHHcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceE----EEEcCCCCCHHHHHHHHHHHhc
Confidence            44556666654 3445677789999999877  5555543 34443    9999999999999999988764

>COG3044 Predicted ATPase of the ABC class [General function prediction only]

Probab=92.43  E-value=0.69  Score=43.65  Aligned_cols=98  Identities=15%  Similarity=0.186  Sum_probs=64.3

Q ss_pred             cccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccC
Q psy8397          49 HTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLD  128 (203)
Q Consensus        49 ~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~  128 (203)
                      +.-.+.=||-+.+-..|=+++=...+.||+||-+++...-.+.    ++.+..+.-+|+.                    
T Consensus       315 ~fvtgdASGStsmAa~IQeaiEagak~lliDED~sAtNllvrd----Vlake~eG~rtl~--------------------  370 (554)
T COG3044         315 DFVTGDASGSTSMAAWIQEAIEAGAKTLLIDEDTSATNLLVRD----VLAKESEGERTLT--------------------  370 (554)
T ss_pred             ccccCCCCchhHHHHHHHHHHHcCCcEEEEccCcchhheehhh----HHHHHhcCcccch--------------------
Confidence            3334568999999999999999999999999999876554333    2222221112221                    


Q ss_pred             CCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEE
Q psy8397         129 SNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCV  176 (203)
Q Consensus       129 ~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~  176 (203)
                           .+.+++......+.++|.++.-.. .....+||+++|.+-+-.
T Consensus       371 -----pl~dei~s~~gd~iS~iaVtggld-dlla~aDRaIvMeDhrpk  412 (554)
T COG3044         371 -----PLVDEIGSLRGDLISTIAVTGGLD-DLLAVADRAIVMEDHRPK  412 (554)
T ss_pred             -----HHHHhhhhhccCceEEEEEeccch-hhhhhcceEEEecccCcc
Confidence                 223333333344466666666655 367899999999986643

>TIGR01070 mutS1 DNA mismatch repair protein MutS

Probab=91.51  E-value=0.57  Score=47.39  Aligned_cols=61  Identities=13%  Similarity=-0.009  Sum_probs=43.1

Q ss_pred             CCHHHHHHHHHHHHH--hcCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHh-CCCeEEEEecCCC
Q psy8397          55 LSGGQKKRLSIALEL--IDNPPIMFLDEPTTGLDSNSTNQCVA-MLKALAR-GGRTIVCTIHQPS  115 (203)
Q Consensus        55 LSgGqrqrl~iA~aL--~~~P~vLlLDEPt~gLD~~~~~~i~~-~l~~l~~-~g~tvi~~tH~~~  115 (203)
                      +|-=+--...+|..|  +.++.++|+||+-.|-|+.....+.. ++..+.+ .|..++++||+.+
T Consensus       652 ~STF~~Em~e~a~IL~~at~~sLvllDE~GrGT~~~dg~aia~ai~e~l~~~~~~~~~~~TH~~e  716 (840)
T TIGR01070       652 RSTFMVEMTEAANILHNATENSLVLFDEIGRGTSTYDGLALAWAIAEYLHEHIRAKTLFATHYFE  716 (840)
T ss_pred             cchHHHHHHHHHHHHhhCCCCEEEEEccCCCCCChhHHHHHHHHHHHHHHhcCCCEEEEEcCchH
Confidence            454444445555544  47899999999977777777766444 5566666 5889999999964

>PRK04863 mukB cell division protein MukB; Provisional

Probab=91.46  E-value=0.15  Score=54.37  Aligned_cols=56  Identities=23%  Similarity=0.441  Sum_probs=42.3

Q ss_pred             CCCCCHHHHHHHHHHHHHh--------c--------CC-CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEe
Q psy8397          52 CGRLSGGQKKRLSIALELI--------D--------NP-PIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTI  111 (203)
Q Consensus        52 v~~LSgGqrqrl~iA~aL~--------~--------~P-~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~t  111 (203)
                      .+.||||||..+..+.-++        .        -| ++|||||. +++|..++..+++.++.+   |.-+|++|
T Consensus      1363 ~~~lSgGE~~~~~~~~l~a~l~~~~~~~~~~r~~~~~~vrl~~lDea-~r~D~~~~~~~~~l~~~~---~~q~i~~t 1435 (1486)
T PRK04863       1363 SGALSTGEAIGTGMSILVMVVQSWEEESRRLRGKDISPCRLLFLDEA-ARLDAKSIATLFELCERL---DMQLLIAA 1435 (1486)
T ss_pred             CCCCCcchhHHHHHHHHHHHHHHhhhccCcccCCcccchHHHHHHHh-hcCCHHHHHHHHHHHHHc---CCcEEEec
Confidence            4679999998877666554        1        12 45699999 999999999999988743   55566555

>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family

Probab=90.81  E-value=0.4  Score=39.96  Aligned_cols=43  Identities=14%  Similarity=0.094  Sum_probs=26.9

Q ss_pred             CCCEEEEeCCCCCC--CHHHHHHHH-HHHHHHHhCCCeEEEEecCC
Q psy8397          72 NPPIMFLDEPTTGL--DSNSTNQCV-AMLKALARGGRTIVCTIHQP  114 (203)
Q Consensus        72 ~P~vLlLDEPt~gL--D~~~~~~i~-~~l~~l~~~g~tvi~~tH~~  114 (203)
                      +|+.+++|-++.-+  ++...+.+. .+.+.+++.|.|+|+++|..
T Consensus       121 ~~~~vvIDsl~~l~~~~~~~~r~~~~~l~~~l~~~~~tvil~~~~~  166 (229)
T TIGR03881       121 GHARLVIDSMSAFWLDKPAMARKYSYYLKRVLNRWNFTILLTSQYA  166 (229)
T ss_pred             CceEEEecCchhhhccChHHHHHHHHHHHHHHHhCCCEEEEEeccc
Confidence            56777777776532  333334443 34444556699999999964

Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.

>PRK13764 ATPase; Provisional

Probab=89.93  E-value=1.2  Score=43.54  Aligned_cols=81  Identities=19%  Similarity=0.250  Sum_probs=53.9

Q ss_pred             HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCc
Q psy8397          68 ELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGR  147 (203)
Q Consensus        68 aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  147 (203)
                      +|..+|+++++||.-..-+       ++++..++..|..++-|-|=-+                ...+...+..+     
T Consensus       320 lLR~rPD~IivGEiRd~Et-------~~~~~~l~~ag~GvigTlHA~s----------------a~~Ai~Rl~~~-----  371 (602)
T PRK13764        320 LLLVRPDYTIYDEMRKTED-------FKIFADMRLAGVGMVGVVHATR----------------PIDAIQRFIGR-----  371 (602)
T ss_pred             HHhhCCCEEEECCCCCHHH-------HHHHHHHHHcCCeEEEEECCCC----------------HHHHHHHHHhh-----
Confidence            4789999999999975332       5555566666888999999543                12222222111     


Q ss_pred             eEEEeecCchhHHHhhcCEEEEEeCCeE--EeeCCccc
Q psy8397         148 TIVCTIHQPSATIFEMVDHLYVIAEGHC--VYKGSSAN  183 (203)
Q Consensus       148 tvi~~~h~~~~~i~~~~d~v~vl~~G~i--~~~g~~~~  183 (203)
                            |++. .+...+|+++.+.+|++  +++++...
T Consensus       372 ------v~lg-~i~~iID~IV~I~~G~I~~v~~~~~~~  402 (602)
T PRK13764        372 ------VELG-MIPQIVDTVIFIEDGEVSKVYDLEFTV  402 (602)
T ss_pred             ------hhhc-hHHHhhcEEEEEeCCEEEEEEeeeeEE
Confidence                  1222 46789999999999998  77776443

>TIGR02903 spore_lon_C ATP-dependent protease, Lon family

Probab=89.82  E-value=0.54  Score=45.88  Aligned_cols=49  Identities=27%  Similarity=0.354  Sum_probs=42.7

Q ss_pred             HHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy8397          34 LVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKA   99 (203)
Q Consensus        34 ~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~   99 (203)
                      .+.+.++.+|+....+..+..+|||                +||||| +..||+..+..+.+.+++
T Consensus       243 ~a~~~l~~~gl~~~~~g~v~~asgG----------------vL~LDE-i~~Ld~~~Q~~Ll~~Le~  291 (615)
T TIGR02903       243 GARRDLAETGVPEPKTGLVTDAHGG----------------VLFIDE-IGELDPLLQNKLLKVLED  291 (615)
T ss_pred             HHHHHHHHcCCCchhcCchhhcCCC----------------eEEEec-cccCCHHHHHHHHHHHhh
Confidence            4556678889988888889999999                999999 799999999999998875

Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.

>COG4938 Uncharacterized conserved protein [Function unknown]

Probab=89.65  E-value=0.59  Score=42.17  Aligned_cols=50  Identities=22%  Similarity=0.432  Sum_probs=42.6

Q ss_pred             HHHHHHHhcCCC-EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecC
Q psy8397          63 LSIALELIDNPP-IMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQ  113 (203)
Q Consensus        63 l~iA~aL~~~P~-vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~  113 (203)
                      +.+++ ++.+|+ ++|..+|-+.|-|+.+-.+.++|.+++..|+-||+.||-
T Consensus       251 i~L~l-li~K~~~lIIIEnPEAHLHP~gQs~lg~llA~~a~~gvqvVveTHS  301 (374)
T COG4938         251 IGLML-LIVKKKYLIIIENPEAHLHPEGQSKLGDLLAELAARGVQVVVETHS  301 (374)
T ss_pred             HHHHe-eeecCCcEEEEcCchhhcCchhHHHHHHHHHHHHhcCcEEEEEech
Confidence            34444 445555 778999999999999999999999999999999999995

>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated

Probab=89.55  E-value=1.3  Score=36.78  Aligned_cols=55  Identities=9%  Similarity=0.138  Sum_probs=34.4

Q ss_pred             HHHHHHHHHHh--cCCCEEEEeCCCCCCC--HHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q psy8397          60 KKRLSIALELI--DNPPIMFLDEPTTGLD--SNSTNQCVAMLKALARGGRTIVCTIHQPS  115 (203)
Q Consensus        60 rqrl~iA~aL~--~~P~vLlLDEPt~gLD--~~~~~~i~~~l~~l~~~g~tvi~~tH~~~  115 (203)
                      ++-+..|+..+  .+.++++|||-...++  .....++.++|+. +..+..||+|-+++.
T Consensus       101 ~~~~~~a~~~l~~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~-rp~~~evILTGR~~p  159 (178)
T PRK07414        101 QELWQYTQAVVDEGRYSLVVLDELSLAIQFGLIPETEVLEFLEK-RPSHVDVILTGPEMP  159 (178)
T ss_pred             HHHHHHHHHHHhCCCCCEEEEehhHHHHHCCCccHHHHHHHHHh-CCCCCEEEEECCCCC
Confidence            44556676666  4579999999987543  4455667776664 223455555555543

>PRK06893 DNA replication initiation factor; Validated

Probab=89.39  E-value=0.78  Score=38.78  Aligned_cols=45  Identities=9%  Similarity=0.222  Sum_probs=34.7

Q ss_pred             hcCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCCeEEEEecCC
Q psy8397          70 IDNPPIMFLDEPTTGL-DSNSTNQCVAMLKALARGGRTIVCTIHQP  114 (203)
Q Consensus        70 ~~~P~vLlLDEPt~gL-D~~~~~~i~~~l~~l~~~g~tvi~~tH~~  114 (203)
                      +.++++|++||..... +......++..+.....+|.++|++|++.
T Consensus        89 ~~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~  134 (229)
T PRK06893         89 LEQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADC  134 (229)
T ss_pred             cccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCC
Confidence            3578999999998754 66666788999998887788876666553

>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated

Probab=89.28  E-value=0.82  Score=38.42  Aligned_cols=65  Identities=20%  Similarity=0.241  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHhc--CCCEEEEeCCCCCCC--HHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhcc
Q psy8397          60 KKRLSIALELID--NPPIMFLDEPTTGLD--SNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHL  125 (203)
Q Consensus        60 rqrl~iA~aL~~--~P~vLlLDEPt~gLD--~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~  125 (203)
                      ++-+..|+..+.  +.++++|||-...++  .....++.++|+. +..+..||+|-++...++.+++|-+
T Consensus       101 ~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~-rp~~~evVlTGR~~p~~Lie~ADlV  169 (191)
T PRK05986        101 REGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNA-RPGMQHVVITGRGAPRELIEAADLV  169 (191)
T ss_pred             HHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHc-CCCCCEEEEECCCCCHHHHHhCchh
Confidence            445677777774  568999999987654  4556778888864 4568899999999998888877655

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=88.90  E-value=1.7  Score=40.27  Aligned_cols=52  Identities=19%  Similarity=0.382  Sum_probs=39.7

Q ss_pred             HHHHHHhcCCCEEEEeC----------CCCCCCHHHHHHHHHHHHHHHh----CCCeEEEEecCCC
Q psy8397          64 SIALELIDNPPIMFLDE----------PTTGLDSNSTNQCVAMLKALAR----GGRTIVCTIHQPS  115 (203)
Q Consensus        64 ~iA~aL~~~P~vLlLDE----------Pt~gLD~~~~~~i~~~l~~l~~----~g~tvi~~tH~~~  115 (203)
                      .+..|....|.|+|+||          +.+|.|....+.+.+++..+..    .+..||++||.++
T Consensus       230 lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d  295 (398)
T PTZ00454        230 VFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRAD  295 (398)
T ss_pred             HHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCch
Confidence            34556668999999999          4567787777778888877642    3678999999875

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=88.08  E-value=1.3  Score=32.35  Aligned_cols=54  Identities=20%  Similarity=0.345  Sum_probs=40.6

Q ss_pred             HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-----CCCeEEEEecCCC
Q psy8397          61 KRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALAR-----GGRTIVCTIHQPS  115 (203)
Q Consensus        61 qrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~-----~g~tvi~~tH~~~  115 (203)
                      +..........++.++++||.-.. ++.....+...+.....     .+.++|++++...
T Consensus        73 ~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~  131 (151)
T cd00009          73 VRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL  131 (151)
T ss_pred             HhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence            445556677789999999998765 56667778888877653     5789999998753

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PRK04296 thymidine kinase; Provisional

Probab=87.99  E-value=2.7  Score=34.52  Aligned_cols=42  Identities=21%  Similarity=0.296  Sum_probs=31.4

Q ss_pred             hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q psy8397          70 IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPS  115 (203)
Q Consensus        70 ~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~  115 (203)
                      -.+++++++||- .-|+.   ..+.++++.++..|.+||++.++.+
T Consensus        76 ~~~~dvviIDEa-q~l~~---~~v~~l~~~l~~~g~~vi~tgl~~~  117 (190)
T PRK04296         76 GEKIDCVLIDEA-QFLDK---EQVVQLAEVLDDLGIPVICYGLDTD  117 (190)
T ss_pred             CCCCCEEEEEcc-ccCCH---HHHHHHHHHHHHcCCeEEEEecCcc
Confidence            347899999999 22443   3366777777888999999999843

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	203
3c41_J	242	Abc Protein Artp In Complex With Amp-PnpMG2+ Length		1e-10
2olj_A	263	Abc Protein Artp In Complex With AdpMG2+ Length = 2		1e-10
1f3o_A	235	Crystal Structure Of Mj0796 Atp-Binding Cassette Le		7e-09
1l2t_A	235	Dimeric Structure Of Mj0796, A Bacterial Abc Transp		1e-08
3tif_A	235	Dimeric Structure Of A Post-Hydrolysis State Of The		2e-08
3g5u_A	1284	Structure Of P-Glycoprotein Reveals A Molecular Bas		3e-08
3g60_A	1284	Structure Of P-Glycoprotein Reveals A Molecular Bas		3e-08
1oxs_C	353	Crystal Structure Of Glcv, The Abc-Atpase Of The Gl		3e-08
1b0u_A	262	Atp-Binding Subunit Of The Histidine Permease From		7e-08
2hyd_A	578	Multidrug Abc Transporter Sav1866 Length = 578		1e-07
4f4c_A	1321	The Crystal Structure Of The Multi-Drug Transporter		1e-07
1oxx_K	353	Crystal Structure Of Glcv, The Abc-Atpase Of The Gl		1e-07
1mv5_A	243	Crystal Structure Of Lmra Atp-Binding Domain Length		2e-07
2pcj_A	224	Crystal Structure Of Abc Transporter (Aq_297) From		3e-07
3dhw_C	343	Crystal Structure Of Methionine Importer Metni Leng		4e-07
3tuj_C	366	Inward Facing Conformations Of The Metni Methionine		1e-06
3tui_C	366	Inward Facing Conformations Of The Metni Methionine		1e-06
2pmk_A	243	Crystal Structures Of An Isolated Abc-Atpase In Com		1e-06
3b5j_A	243	Crystal Structures Of The S504a Mutant Of An Isolat		1e-06
3b5w_A	582	Crystal Structure Of Eschericia Coli Msba Length =		2e-06
3b5y_A	582	Crystal Structure Of Msba From Salmonella Typhimuri		2e-06
1mt0_A	241	Atp-Binding Domain Of Haemolysin B From Escherichia		2e-06
2ff7_A	247	The Abc-Atpase Of The Abc-Transporter Hlyb In The A		2e-06
2yz2_A	266	Crystal Structure Of The Abc Transporter In The Cob		2e-06
4hlu_A	268	Structure Of The Ecfa-a' Heterodimer Bound To Adp L		2e-06
4ayt_A	595	Structure Of The Human Mitochondrial Abc Transporte		2e-06
4ayw_A	619	Structure Of The Human Mitochondrial Abc Transporte		3e-06
3b5x_A	582	Crystal Structure Of Msba From Vibrio Cholerae Leng		5e-06
2ffb_A	247	The Crystal Structure Of The Hlyb-Nbd E631q Mutant		5e-06
3gfo_A	275	Structure Of Cbio1 From Clostridium Perfringens: Pa		7e-06
4hlu_D	268	Structure Of The Ecfa-a' Heterodimer Bound To Adp L		1e-05
3d31_A	348	Modbc From Methanosarcina Acetivorans Length = 348		1e-05
1xef_A	241	Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI		1e-05
2ffa_A	247	Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr		1e-05
3qf4_A	587	Crystal Structure Of A Heterodimeric Abc Transporte		2e-05
2it1_A	362	Structure Of Ph0203 Protein From Pyrococcus Horikos		3e-05
1vpl_A	256	Crystal Structure Of Abc Transporter Atp-binding Pr		8e-05
2yyz_A	359	Crystal Structure Of Sugar Abc Transporter, Atp-Bin		9e-05
1g29_1	372	Malk Length = 372		1e-04
2ghi_A	260	Crystal Structure Of Plasmodium Yoelii Multidrug Re		1e-04
3nh6_A	306	Nucleotide Binding Domain Of Human Abcb6 (Apo Struc		1e-04
2d62_A	375	Crystal Structure Of Multiple Sugar Binding Transpo		1e-04
2nq2_C	253	An Inward-Facing Conformation Of A Putative Metal-C		2e-04
1q1b_A	381	Crystal Structure Of E. Coli Malk In The Nucleotide		2e-04
1q12_A	381	Crystal Structure Of The Atp-bound E. Coli Malk Len		2e-04
1yqt_A	538	Rnase-L Inhibitor Length = 538		2e-04
2ihy_A	279	Structure Of The Staphylococcus Aureus Putative Atp		3e-04
3ux8_A	670	Crystal Structure Of Uvra Length = 670		3e-04
3uwx_A	972	Crystal Structure Of Uvra-Uvrb Complex Length = 972		3e-04
1jj7_A	260	Crystal Structure Of The C-Terminal Atpase Domain O		4e-04
2r6g_A	381	The Crystal Structure Of The E. Coli Maltose Transp		4e-04
4fwi_B	334	Crystal Structure Of The Nucleotide-binding Domain		5e-04
2r6f_A	972	Crystal Structure Of Bacillus Stearothermophilus Uv		8e-04
2ixf_A	271	Crystal Structure Of The Atpase Domain Of Tap1 With		8e-04

>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 44/77 (57%)
Query: 37  DILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAM 96
           ++LD +GL    H     LSGGQ +R++IA  L   P IM  DEPT+ LD     + +++
Sbjct: 121 ELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSV 180
Query: 97  LKALARGGRTIVCTIHQ 113
           +K LA  G T+V   H+
Sbjct: 181 MKQLANEGMTMVVVTHE 197

>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 44/77 (57%)
Query: 37  DILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAM 96
           ++LD +GL    H     LSGGQ +R++IA  L   P IM  DEPT+ LD     + +++
Sbjct: 142 ELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSV 201
Query: 97  LKALARGGRTIVCTIHQ 113
           +K LA  G T+V   H+
Sbjct: 202 MKQLANEGMTMVVVTHE 218

>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235

Iteration: 1
 Score = 57.0 bits (136), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 54  RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKAL-ARGGRTIVCTIH 112
           +LSGGQ++R++IA  L +NPPI+  DEPT  LDS +  +   +LK L    G+T+V   H
Sbjct: 145 QLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKLNEEDGKTVVVVTH 204
Query: 113 QPSATIF 119
             +   F
Sbjct: 205 DINVARF 211

>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 54  RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKAL-ARGGRTIVCTIH 112
           +LSGGQ++R++IA  L +NPPI+  D+PT  LDS +  + + +LK L    G+T+V   H
Sbjct: 145 QLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTH 204
Query: 113 QPSATIF 119
             +   F
Sbjct: 205 DINVARF 211

>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 54  RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKAL-ARGGRTIVCTIH 112
           +LSGGQ++R++IA  L +NPPI+  D+PT  LDS +  + + +LK L    G+T+V   H
Sbjct: 145 QLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTH 204
Query: 113 QPSATIF 119
             +   F
Sbjct: 205 DINVARF 211

>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/63 (46%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 53  GRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112
            +LSGGQK+R++IA  L+ NP I+ LDE T+ LD+ S     A L   AR GRT +   H
Sbjct: 525 AQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDK-AREGRTTIVIAH 583
Query: 113 QPS 115
           + S
Sbjct: 584 RLS 586

>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/63 (46%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 53  GRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112
            +LSGGQK+R++IA  L+ NP I+ LDE T+ LD+ S     A L   AR GRT +   H
Sbjct: 525 AQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDK-AREGRTTIVIAH 583
Query: 113 QPS 115
           + S
Sbjct: 584 RLS 586

>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 48/74 (64%), Gaps = 2/74 (2%)
Query: 55  LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKAL-ARGGRTIVCTIHQ 113
           LSGGQ++R+++A  L+ +P ++ LDEP + LD+   +   A++K + +R G T++   H 
Sbjct: 141 LSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHD 200
Query: 114 PSATIFEMVDHLGL 127
           P A IF + D +G+
Sbjct: 201 P-ADIFAIADRVGV 213

>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262

Iteration: 1
 Score = 53.5 bits (127), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 37/59 (62%)
Query: 55  LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQ 113
           LSGGQ++R+SIA  L   P ++  DEPT+ LD     + + +++ LA  G+T+V   H+
Sbjct: 154 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE 212

>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/62 (45%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Query: 54  RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQ 113
           +LSGGQK+RLSIA   ++NPPI+ LDE T+ LD  S +     L  L++  RT +   H+
Sbjct: 477 KLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK-DRTTLIVAHR 535
Query: 114 PS 115
            S
Sbjct: 536 LS 537

>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/79 (39%), Positives = 45/79 (56%), Gaps = 3/79 (3%)
Query: 54   RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQ 113
            +LSGGQK+R++IA  L+ NP I+ LDE T+ LD+ S       L   AR GRT +   H+
Sbjct: 1217 QLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDR-AREGRTCIVIAHR 1275
Query: 114  PSATIFEMVDHLGLDSNST 132
             +  +    D + + SN T
Sbjct: 1276 LNTVM--NADCIAVVSNGT 1292

>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 47/74 (63%), Gaps = 2/74 (2%)
Query: 55  LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKAL-ARGGRTIVCTIHQ 113
           LSG Q++R+++A  L+ +P ++ LDEP + LD+   +   A++K + +R G T++   H 
Sbjct: 141 LSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHD 200
Query: 114 PSATIFEMVDHLGL 127
           P A IF + D +G+
Sbjct: 201 P-ADIFAIADRVGV 213

>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 54  RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQ 113
           ++SGGQ++RL+IA   + NP I+ LDE T  LDS S +     L +L + GRT +   H+
Sbjct: 139 KISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMK-GRTTLVIAHR 197
Query: 114 PSATI 118
            S  +
Sbjct: 198 LSTIV 202

>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 38/59 (64%)
Query: 55  LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQ 113
           LSGG+++R++IA  L + P ++F DEPT  LDS +T + + +   +  GG +IV   H+
Sbjct: 141 LSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHE 199

>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 35  VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
           V ++L  +GL     +    LSGGQK+R++IA  L  NP ++  DE T+ LD  +T   +
Sbjct: 121 VTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSIL 180
Query: 95  AMLKALARG-GRTIVCTIHQ 113
            +LK + R  G TI+   H+
Sbjct: 181 ELLKDINRRLGLTILLITHE 200

>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 35  VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
           V ++L  +GL     +    LSGGQK+R++IA  L  NP ++  D+ T+ LD  +T   +
Sbjct: 144 VTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSIL 203
Query: 95  AMLKALARG-GRTIVCTIHQ 113
            +LK + R  G TI+   H+
Sbjct: 204 ELLKDINRRLGLTILLITHE 223

>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 35  VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
           V ++L  +GL     +    LSGGQK+R++IA  L  NP ++  D+ T+ LD  +T   +
Sbjct: 144 VTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSIL 203
Query: 95  AMLKALARG-GRTIVCTIHQ 113
            +LK + R  G TI+   H+
Sbjct: 204 ELLKDINRRLGLTILLITHE 223

>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 55  LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQP 114
           LSGGQ++R++IA  L++NP I+  DE T+ LD  S +  +  +  + + GRT++   H+ 
Sbjct: 142 LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIAHRL 200
Query: 115 S 115
           S
Sbjct: 201 S 201

>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 55  LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQP 114
           LSGGQ++R++IA  L++NP I+  DE T+ LD  S +  +  +  + + GRT++   H+ 
Sbjct: 142 LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIAHRL 200
Query: 115 S 115
           S
Sbjct: 201 S 201

>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 51/87 (58%), Gaps = 6/87 (6%)
Query: 29  LDTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSN 88
           +D I  +D+ LDT   V+ ++ +   LSGGQ++R++IA  L+ + PI+ LDE T+ LD+ 
Sbjct: 460 MDFINKMDNGLDT---VIGENGVL--LSGGQRQRIAIARALLRDSPILILDEATSALDTE 514
Query: 89  STNQCVAMLKALARGGRTIVCTIHQPS 115
           S     A L  L +  RT +   H+ S
Sbjct: 515 SERAIQAALDELQK-NRTSLVIAHRLS 540

>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 51/87 (58%), Gaps = 6/87 (6%)
Query: 29  LDTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSN 88
           +D I  +D+ LDTI   + ++ +   LSGGQ++R++IA  L+ + PI+ LDE T+ LD+ 
Sbjct: 460 MDFINKMDNGLDTI---IGENGVL--LSGGQRQRIAIARALLRDSPILILDEATSALDTE 514
Query: 89  STNQCVAMLKALARGGRTIVCTIHQPS 115
           S     A L  L +  RT +   H+ S
Sbjct: 515 SERAIQAALDELQK-NRTSLVIAHRLS 540

>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 55  LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQP 114
           LSGGQ++R++IA  L++NP I+  DE T+ LD  S +  +  +  + + GRT++   H+ 
Sbjct: 140 LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIAHRL 198
Query: 115 S 115
           S
Sbjct: 199 S 199

>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 55  LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQP 114
           LSGGQ++R++IA  L++NP I+  DE T+ LD  S +  +  +  + + GRT++   H+ 
Sbjct: 146 LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIAHRL 204
Query: 115 S 115
           S
Sbjct: 205 S 205

>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 30  DTIGLVDDILDTIGLVLS--KHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDS 87
           D + LV   ++ +GL     K  +   LSGG+K+R++IA  ++  P I+ LDEP  GLD 
Sbjct: 112 DPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDR 171
Query: 88  NSTNQCVAMLKALARGGRTIVCTIHQPSATI 118
                 + +++     G+T++   H     I
Sbjct: 172 EGKTDLLRIVEKWKTLGKTVILISHDIETVI 202

>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 30  DTIGLVDDILDTIGLVLS--KHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDS 87
           D + LV   ++ +GL     K  +   LSGG+K+R++IA  ++  P I+ LDEP  GLD 
Sbjct: 114 DPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDR 173
Query: 88  NSTNQCVAMLKALARGGRTIVCTIHQPSATI 118
                 + +++     G+T++   H     I
Sbjct: 174 EGKTDLLRIVEKWKTLGKTVILISHDIETVI 204

>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 54/101 (53%), Gaps = 5/101 (4%)
Query: 15  ISAQYSHRISVDDILDTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP 74
           ++A+   R++  ++ + +  + +       V+ +  +   LSGGQK+R++IA  L+ NP 
Sbjct: 448 VTAEEIQRVA--EVANAVAFIRNFPQGFNTVVGEKGVL--LSGGQKQRIAIARALLKNPK 503
Query: 75  IMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPS 115
           I+ LDE T+ LD+ +       L  L   GRT++   H+ S
Sbjct: 504 ILLLDEATSALDAENEYLVQEALDRLM-DGRTVLVIAHRLS 543

>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/61 (42%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 55  LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQP 114
           LSGGQK+R++IA  L+ NP I+ LDE T+ LD+ +       L  L   GRT++   H  
Sbjct: 515 LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLM-DGRTVLVIAHHL 573
Query: 115 S 115
           S
Sbjct: 574 S 574

>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582

Iteration: 1
 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 55  LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQP 114
           LSGGQ++R++IA  L+ + P++ LDE T+ LD+ S     A L  L +  +T++   H+ 
Sbjct: 481 LSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQK-NKTVLVIAHRL 539
Query: 115 S 115
           S
Sbjct: 540 S 540

>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247

Iteration: 1
 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 55  LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQP 114
           LSGGQ++R++IA  L++NP I+  D+ T+ LD  S +  +  +  + + GRT++   H+ 
Sbjct: 146 LSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIMRNMHKICK-GRTVIIIAHRL 204
Query: 115 S 115
           S
Sbjct: 205 S 205

>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275

Iteration: 1
 Score = 47.0 bits (110), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 5/81 (6%)
Query: 35  VDDILDTIGL--VLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQ 92
           VD+ L   G+  +  K T C  LS GQKKR++IA  L+  P ++ LDEPT GLD    ++
Sbjct: 124 VDNALKRTGIEHLKDKPTHC--LSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSE 181
Query: 93  CVAMLKALARG-GRTIVCTIH 112
            + +L  + +  G TI+   H
Sbjct: 182 IMKLLVEMQKELGITIIIATH 202

>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 10/109 (9%)
Query: 13  QIISAQYSHRISVDDILDTIGL--------VDDILDTIGLVLSKHTLCGRLSGGQKKRLS 64
           QII A     ++    L+ +GL        +  +L+ +GL          LSGGQK+RL+
Sbjct: 93  QIIGATVEEDVAFS--LEIMGLDESEMRKRIKKVLELVGLSGLAAADPLNLSGGQKQRLA 150
Query: 65  IALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQ 113
           IA  L  +   + LDEP + LD  S  +   +L++L   G+ I+   H+
Sbjct: 151 IASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKNEGKGIILVTHE 199

>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 37/73 (50%)
Query: 55  LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQP 114
           LSGG+++R+++A  L+ NP I+ LDEP + LD  +      ML  L +  +  V  I   
Sbjct: 128 LSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHD 187
Query: 115 SATIFEMVDHLGL 127
                 M D + +
Sbjct: 188 QTEARIMADRIAV 200

>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 55  LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVC 109
           LSGGQ++R++IA  L++NP I+  DE T+ LD  S +  +  +  + + GRT++ 
Sbjct: 140 LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVII 193

>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 55  LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVC 109
           LSGGQ++R++IA  L++NP I+  DE T+ LD  S +  +  +  + + GRT++ 
Sbjct: 146 LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVII 199

>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 53  GR-LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTI 111
           GR  SGGQK+RLSIA  L+  P ++ LD+ T+ +D  +  + +  LK   +G  T + T 
Sbjct: 477 GRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQ 536
Query: 112 HQPSATI 118
             P+A +
Sbjct: 537 KIPTALL 543

>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 54  RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIH 112
           +LSGGQ++R++IA  L+  P ++ LDEP + LD+    +  A LK L +  G T V   H
Sbjct: 133 QLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTH 192
Query: 113 QPSATIFEMVDHLGL 127
              A    M D + +
Sbjct: 193 D-QAEALAMADRIAV 206

>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256

Iteration: 1
 Score = 43.5 bits (101), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 56  SGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPS 115
           S G  ++L IA  L+ NP +  LDEPT+GLD  +  +   +LK  ++ G TI+ + H   
Sbjct: 148 SKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML 207
Query: 116 ATIFEMVDHLGLDSNST 132
              F + D + L  N T
Sbjct: 208 EVEF-LCDRIALIHNGT 223

>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359

Iteration: 1
 Score = 43.1 bits (100), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 43/75 (57%), Gaps = 15/75 (20%)
Query: 20  SHRISVDDILDTIG------LVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNP 73
           + RIS D++   +       L+D++LD       K T   +LSGGQ++R+++A  L+  P
Sbjct: 102 ARRISKDEVEKRVVEIARKLLIDNLLD------RKPT---QLSGGQQQRVALARALVKQP 152
Query: 74  PIMFLDEPTTGLDSN 88
            ++  DEP + LD+N
Sbjct: 153 KVLLFDEPLSNLDAN 167

>pdb|1G29|1 Chain 1, Malk Length = 372

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 35  VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
           V ++ + +GL    +     LSGGQ++R+++   ++  P +  +DEP + LD+    +  
Sbjct: 120 VREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMR 179
Query: 95  AMLKALAR--GGRTIVCTIHQPSA 116
           A LK L R  G  TI  T  Q  A
Sbjct: 180 AELKKLQRQLGVTTIYVTHDQVEA 203

>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 54  RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQ 113
           +LSGG+++R++IA  L+ +P I+  DE T+ LDS +       ++ L R  RT++   H+
Sbjct: 155 KLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDL-RKNRTLIIIAHR 213
Query: 114 PS 115
            S
Sbjct: 214 LS 215

>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 54  RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQ 113
           +LSGG+K+R++IA  ++  P I+ LDE T+ LD+++     A L  +    RT +   H+
Sbjct: 190 KLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVC-ANRTTIVVAHR 248
Query: 114 PSATI 118
            S  +
Sbjct: 249 LSTVV 253

>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 35  VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
           V ++ + +GL    +     LSGGQ++R+++   +I  P +   DEP + LD+    +  
Sbjct: 123 VREVAEXLGLTELLNRKPRELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXR 182
Query: 95  AMLKALAR--GGRTIVCTIHQPSA 116
           A LK L R  G  TI  T  Q  A
Sbjct: 183 AELKKLQRQLGVTTIYVTHDQVEA 206

>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 39  LDTIGLV-LSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAML 97
           LD + L  L+K      LSGGQ++ + IA  +     ++ LDEPT+ LD  + +  +++L
Sbjct: 113 LDYLNLTHLAKREFTS-LSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLL 171
Query: 98  KALARG-GRTIVCTIHQPSATI 118
             LA+    T+V T HQP+  +
Sbjct: 172 IDLAQSQNMTVVFTTHQPNQVV 193

>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 55  LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKAL-ARGGRTIVCTIH 112
           LSGGQ++R++I   L+  P +  LDEP + LD+    Q    +  L  R GRT++   H
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTH 192

>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 55  LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKAL-ARGGRTIVCTIH 112
           LSGGQ++R++I   L+  P +  LDEP + LD+    Q    +  L  R GRT++   H
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTH 192

>pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/83 (25%), Positives = 41/83 (49%)
Query: 30  DTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNS 89
           D  G +++++  + L          LSGG+ +R++IA  L+ N    F DEP++ LD   
Sbjct: 134 DETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQ 193
Query: 90  TNQCVAMLKALARGGRTIVCTIH 112
                  ++ L+  G++++   H
Sbjct: 194 RLNAARAIRRLSEEGKSVLVVEH 216

>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase Subunit Of An Atp-Binding Cassette (Abc) Transporter Length = 279

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Query: 14  IISAQYSHRISVDDILDTI-GLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDN 72
           +IS  +       DI D I      +L  +G         G LS G+K+R+ IA  L   
Sbjct: 120 VISGAFKSIGVYQDIDDEIRNEAHQLLKLVGXSAKAQQYIGYLSTGEKQRVXIARALXGQ 179
Query: 73  PPIMFLDEPTTGLD 86
           P ++ LDEP  GLD
Sbjct: 180 PQVLILDEPAAGLD 193

>pdb|3UX8|A Chain A, Crystal Structure Of Uvra Length = 670

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/94 (28%), Positives = 50/94 (53%), Gaps = 7/94 (7%)
Query: 22  RISVDDILDTIGLVDDI-LDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP--IMFL 78
           R+ + +I D +G + ++ LD + L  S     G LSGG+ +R+ +A ++       +  L
Sbjct: 173 RLILREIRDRLGFLQNVGLDYLTLSRS----AGTLSGGEAQRIRLATQIGSRLTGVLYVL 228
Query: 79  DEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112
           DEP+ GL     ++ +A LK++   G T++   H
Sbjct: 229 DEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEH 262

>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex Length = 972

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/94 (28%), Positives = 50/94 (53%), Gaps = 7/94 (7%)
Query: 22  RISVDDILDTIGLVDDI-LDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP--IMFL 78
           R+ + +I D +G + ++ LD + L  S     G LSGG+ +R+ +A ++       +  L
Sbjct: 475 RLILREIRDRLGFLQNVGLDYLTLSRS----AGTLSGGEAQRIRLATQIGSRLTGVLYVL 530
Query: 79  DEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112
           DEP+ GL     ++ +A LK++   G T++   H
Sbjct: 531 DEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEH 564

>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 43/73 (58%), Gaps = 3/73 (4%)
Query: 54  RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAML-KALARGGRTIVCTIH 112
           +LSGGQ++ +++A  LI  P ++ LD+ T+ LD+NS  Q   +L ++  R  R+++    
Sbjct: 154 QLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQ 213
Query: 113 QPSATIFEMVDHL 125
             S  + E  DH+
Sbjct: 214 HLS--LVEQADHI 224

>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 55  LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKAL-ARGGRTIVCTIH 112
           LSGGQ++R++I   L+  P +  LD+P + LD+    Q    +  L  R GRT++   H
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTH 192

>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A Dipeptide Abc Transporter Length = 334

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 21/42 (50%), Positives = 31/42 (73%), Gaps = 2/42 (4%)
Query: 45  VLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLD 86
           VL+ + L  +LSGG K+R+ IAL L+ +P ++ LDEPT+ LD
Sbjct: 147 VLNSYPL--QLSGGMKQRVLIALALLLDPVVLILDEPTSALD 186

>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra Length = 972

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 7/94 (7%)
Query: 22  RISVDDILDTIGLVDDI-LDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP--IMFL 78
           R+ + +I D +G + ++ LD + L  S     G LSGG+ +R+ +A ++       +  L
Sbjct: 475 RLILREIRDRLGFLQNVGLDYLTLSRS----AGTLSGGEAQRIRLATQIGSRLTGVLYVL 530
Query: 79  DEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112
           DEP+ GL     ++ +A LK+    G T++   H
Sbjct: 531 DEPSIGLHQRDNDRLIATLKSXRDLGNTLIVVEH 564

>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271

Iteration: 1
 Score = 40.0 bits (92), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 55/101 (54%), Gaps = 6/101 (5%)
Query: 54  RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAML-KALARGGRTIVCTIH 112
           +LSGGQ++ +++A  LI  P ++ LD+ T+ LD+ +  +   +L ++     RT++   H
Sbjct: 156 QLSGGQRQAVALARALIRKPRLLILDQATSALDAGNQLRVQRLLYESPEWASRTVLLITH 215
Query: 113 QPSATIFEMVDH-LGLDSNSTNQCVAMLKALARGG--RTIV 150
           Q S  + E   H L L   S  +    L+ + RGG  R++V
Sbjct: 216 QLS--LAERAHHILFLKEGSVCEQGTHLQLMERGGCYRSMV 254

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	203
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	3e-20
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	2e-17
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	2e-15
1sgw_A	214	Putative ABC transporter; structural genomics, P p	3e-15
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	3e-13
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	3e-13
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	4e-13
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	6e-13
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	2e-11
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	7e-13
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	2e-10
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	1e-12
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	5e-12
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	2e-12
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	3e-12
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	3e-12
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	2e-11
2ghi_A	260	Transport protein; multidrug resistance protein, M	9e-12
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	1e-11
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	2e-08
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	2e-11
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	1e-10
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	2e-11
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	6e-11
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	7e-11
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	1e-10
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	1e-10
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	2e-10
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	3e-10
1g6h_A	257	High-affinity branched-chain amino acid transport	3e-10
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	4e-10
1b0u_A	262	Histidine permease; ABC transporter, transport pro	5e-10
1f2t_B	148	RAD50 ABC-ATPase; DNA double-strand break repair,	1e-09
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	3e-09
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	7e-09
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	9e-09
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	1e-08
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	1e-07
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	7e-06
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	4e-05
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	4e-05
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	4e-04

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256

 Score = 84.5 bits (210), Expect = 3e-20
 Identities = 25/78 (32%), Positives = 39/78 (50%)

Query: 35  VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
           V+   +  GL           S G  ++L IA  L+ NP +  LDEPT+GLD  +  +  
Sbjct: 127 VERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVR 186

Query: 95  AMLKALARGGRTIVCTIH 112
            +LK  ++ G TI+ + H
Sbjct: 187 KILKQASQEGLTILVSSH 204

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279

 Score = 77.3 bits (191), Expect = 2e-17
 Identities = 28/133 (21%), Positives = 53/133 (39%), Gaps = 19/133 (14%)

Query: 13  QIISAQYSHRISVDDIL-----DTIGL-----------VDDILDTIGLVLSKHTLCGRLS 56
             +  ++     V D++      +IG+              +L  +G+        G LS
Sbjct: 104 HSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLS 163

Query: 57  GGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGR--TIVCTIHQP 114
            G+K+R+ IA  L+  P ++ LDEP  GLD  +    +++L +L+       ++   H  
Sbjct: 164 TGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFI 223

Query: 115 SATIFEMVDHLGL 127
              I      + L
Sbjct: 224 E-EITANFSKILL 235

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253

 Score = 71.4 bits (176), Expect = 2e-15
 Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 2/95 (2%)

Query: 34  LVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQC 93
           +    LD + L          LSGGQ++ + IA  +     ++ LDEPT+ LD  + +  
Sbjct: 108 VAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIV 167

Query: 94  VAMLKALAR-GGRTIVCTIHQPSATIFEMVDHLGL 127
           +++L  LA+    T+V T HQP+  +  + +   L
Sbjct: 168 LSLLIDLAQSQNMTVVFTTHQPN-QVVAIANKTLL 201

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214

 Score = 70.2 bits (173), Expect = 3e-15
 Identities = 20/94 (21%), Positives = 40/94 (42%), Gaps = 7/94 (7%)

Query: 35  VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
           + D L+++ + L      G LS G  +R+ +A  L+ N  I  LD+P   +D +S ++ +
Sbjct: 115 IMDALESVEV-LDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVL 173

Query: 95  AMLKALAR-GGRTIVCTIHQPSATIFEMVDHLGL 127
             +  + +  G  I+ +            D    
Sbjct: 174 KSILEILKEKGIVIISSRE-----ELSYCDVNEN 202

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266

 Score = 65.7 bits (161), Expect = 3e-13
 Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 6/88 (6%)

Query: 30  DTIGLVDDILDTIGL----VLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGL 85
           D + LV   ++ +GL       +      LSGG+K+R++IA  ++  P I+ LDEP  GL
Sbjct: 112 DPVPLVKKAMEFVGLDFDSFKDRVPF--FLSGGEKRRVAIASVIVHEPDILILDEPLVGL 169

Query: 86  DSNSTNQCVAMLKALARGGRTIVCTIHQ 113
           D       + +++     G+T++   H 
Sbjct: 170 DREGKTDLLRIVEKWKTLGKTVILISHD 197

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339

 Score = 65.8 bits (160), Expect = 3e-13
 Identities = 21/119 (17%), Positives = 42/119 (35%), Gaps = 12/119 (10%)

Query: 13  QIISAQYSHRISVDDILDTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALEL--- 69
           +I +     + S   +      V   +   G       L    SGG++  L +A  L   
Sbjct: 211 EIFAEFTEGKYSEVVVRAEENKVRLFVVWEGKERPLTFL----SGGERIALGLAFRLAMS 266

Query: 70  ---IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHL 125
                   ++ LDEPT  LD     + + +++   +    ++   H     + +  DH+
Sbjct: 267 LYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAADHV 323

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224

 Score = 64.4 bits (158), Expect = 4e-13
 Identities = 23/60 (38%), Positives = 38/60 (63%)

Query: 55  LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQP 114
           LSGG+++R++IA  L + P ++F DEPT  LDS +T + + +   +  GG +IV   H+ 
Sbjct: 141 LSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHER 200

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607

 Score = 65.4 bits (160), Expect = 6e-13
 Identities = 26/114 (22%), Positives = 51/114 (44%), Gaps = 16/114 (14%)

Query: 13  QIISAQYSHRISVDDILDTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDN 72
           +I S++ +      ++L  +G+  D+ D       ++     LSGG+ +R++IA  L+ +
Sbjct: 440 KIDSSKLNSNFYKTELLKPLGI-IDLYD-------RNV--EDLSGGELQRVAIAATLLRD 489

Query: 73  PPIMFLDEPTTGLDSNSTNQCVAMLKALAR-GGRTIVCTIHQPSATIFEMVDHL 125
             I  LDEP+  LD          ++ L     +T +   H        M+D++
Sbjct: 490 ADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHD-----VLMIDYV 538

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607

 Score = 61.6 bits (150), Expect = 2e-11
 Identities = 24/106 (22%), Positives = 49/106 (46%), Gaps = 11/106 (10%)

Query: 13  QIISAQYSHRIS------VDDILDTIGLVDDILDTIGLVLSKHTLCGR----LSGGQKKR 62
            ++  QY   +       V ++L  +  V    + +  +  ++ L  R    LSGG+ +R
Sbjct: 178 PVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVL-DRELHQLSGGELQR 236

Query: 63  LSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIV 108
           ++IA  L+      F DEP++ LD     +   +++ LA  G+ ++
Sbjct: 237 VAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVL 282

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538

 Score = 65.4 bits (160), Expect = 7e-13
 Identities = 22/96 (22%), Positives = 44/96 (45%), Gaps = 11/96 (11%)

Query: 14  IISAQYSHRISVDDILDTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNP 73
           I +++ +      ++L  +G+  D+ D       +      LSGG+ +R++IA  L+ + 
Sbjct: 371 IDASKLNSNFYKTELLKPLGI-IDLYD-------REVNE--LSGGELQRVAIAATLLRDA 420

Query: 74  PIMFLDEPTTGLDSNSTNQCVAMLKALA-RGGRTIV 108
            I  LDEP+  LD          ++ L  +  +T +
Sbjct: 421 DIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTAL 456

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538

 Score = 58.1 bits (141), Expect = 2e-10
 Identities = 26/109 (23%), Positives = 51/109 (46%), Gaps = 17/109 (15%)

Query: 13  QIISAQYSHRIS------VDDIL---DTIGLVDDILDTIGLVLSKHTLCGR----LSGGQ 59
            ++  QY   I       V ++L   D  G +++++  + L      +  R    LSGG+
Sbjct: 108 PVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALEL----ENVLEREIQHLSGGE 163

Query: 60  KKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIV 108
            +R++IA  L+ N    F DEP++ LD          ++ L+  G++++
Sbjct: 164 LQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVL 212

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538

 Score = 65.0 bits (159), Expect = 1e-12
 Identities = 23/109 (21%), Positives = 44/109 (40%), Gaps = 6/109 (5%)

Query: 18  QYSHRISVDDILDTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMF 77
           QY    S D +  +    +++   + L     +    LSGG+ ++L IA  L     +  
Sbjct: 349 QYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYV 408

Query: 78  LDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTI-HQPSATIFEMVDHL 125
           LD+P++ LD          +K + R  + +   I H        + D++
Sbjct: 409 LDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHD-----LSIHDYI 452

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538

 Score = 62.7 bits (153), Expect = 5e-12
 Identities = 19/86 (22%), Positives = 36/86 (41%), Gaps = 8/86 (9%)

Query: 29  LDTIGLVDDILDTIGLVLSKHTLCGR----LSGGQKKRLSIALELIDNPPIMFLDEPTTG 84
           +D  G  D++ + + +      L  +    LSGG  +RL +A  L+    +   D+P++ 
Sbjct: 113 IDERGKKDEVKELLNMT----NLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSY 168

Query: 85  LDSNSTNQCVAMLKALARGGRTIVCT 110
           LD          ++ L +    IV  
Sbjct: 169 LDVRERMNMAKAIRELLKNKYVIVVD 194

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275

 Score = 63.3 bits (155), Expect = 2e-12
 Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 1/80 (1%)

Query: 35  VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
           VD+ L   G+   K      LS GQKKR++IA  L+  P ++ LDEPT GLD    ++ +
Sbjct: 124 VDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIM 183

Query: 95  AMLKALAR-GGRTIVCTIHQ 113
            +L  + +  G TI+   H 
Sbjct: 184 KLLVEMQKELGITIIIATHD 203

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235

 Score = 62.2 bits (152), Expect = 3e-12
 Identities = 26/61 (42%), Positives = 39/61 (63%), Gaps = 1/61 (1%)

Query: 55  LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKAL-ARGGRTIVCTIHQ 113
           LSGGQ++R++IA  L +NPPI+  D+PT  LDS +  + + +LK L    G+T+V   H 
Sbjct: 146 LSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHD 205

Query: 114 P 114
            
Sbjct: 206 I 206

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608

 Score = 63.5 bits (155), Expect = 3e-12
 Identities = 18/88 (20%), Positives = 35/88 (39%), Gaps = 5/88 (5%)

Query: 24  SVDDILDTIGLVDDILDTIGLV--LSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEP 81
            +           D++  + +   + +      LSGG+ +R++I L L     I  +DEP
Sbjct: 437 KIRGQFLNPQFQTDVVKPLRIDDIIDQEV--QHLSGGELQRVAIVLALGIPADIYLIDEP 494

Query: 82  TTGLDSNSTNQCVAMLKALARG-GRTIV 108
           +  LDS     C  +++       +T  
Sbjct: 495 SAYLDSEQRIICSKVIRRFILHNKKTAF 522

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608

 Score = 61.2 bits (149), Expect = 2e-11
 Identities = 12/54 (22%), Positives = 27/54 (50%)

Query: 55  LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIV 108
           LSGG+ +R +I +  +    +   DEP++ LD         ++++L    + ++
Sbjct: 222 LSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVI 275

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260

 Score = 61.4 bits (150), Expect = 9e-12
 Identities = 18/55 (32%), Positives = 33/55 (60%)

Query: 54  RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIV 108
           +LSGG+++R++IA  L+ +P I+  DE T+ LDS +       ++ L +    I+
Sbjct: 155 KLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLII 209

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score = 62.4 bits (151), Expect = 1e-11
 Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 11/88 (12%)

Query: 25  VDDILDTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTG 84
           +++    +GL  +I+         H+    LSGGQK +L +A      P ++ LDEPT  
Sbjct: 880 IEEHCSMLGLDPEIVS--------HSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNY 931

Query: 85  LDSNSTNQCVAMLKALARGGRTIVCTIH 112
           LD +S     A+ KAL      ++   H
Sbjct: 932 LDRDS---LGALSKALKEFEGGVIIITH 956

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score = 52.7 bits (126), Expect = 2e-08
 Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 12/88 (13%)

Query: 25  VDDILDTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTG 84
           + D L   G  D+++               LSGG K +L++A  ++ N  I+ LDEPT  
Sbjct: 528 IKDKLIEFGFTDEMIAM---------PISALSGGWKMKLALARAVLRNADILLLDEPTNH 578

Query: 85  LDSNSTNQCVAMLKALARGGRTIVCTIH 112
           LD+ +      ++  L   G T +   H
Sbjct: 579 LDTVN---VAWLVNYLNTCGITSITISH 603

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284

 Score = 61.6 bits (150), Expect = 2e-11
 Identities = 32/76 (42%), Positives = 45/76 (59%), Gaps = 10/76 (13%)

Query: 49   HTLCG----RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKAL--AR 102
            +T  G    +LSGGQK+R++IA  L+  P I+ LDE T+ LD+ S      + +AL  AR
Sbjct: 1162 NTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEK---VVQEALDKAR 1218

Query: 103  GGRTIVCTIHQPSATI 118
             GRT +   H+ S TI
Sbjct: 1219 EGRTCIVIAHRLS-TI 1233

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284

 Score = 59.3 bits (144), Expect = 1e-10
 Identities = 33/76 (43%), Positives = 45/76 (59%), Gaps = 10/76 (13%)

Query: 49  HTLCG----RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKAL--AR 102
            TL G    +LSGGQK+R++IA  L+ NP I+ LDE T+ LD+ S      +  AL  AR
Sbjct: 517 DTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEA---VVQAALDKAR 573

Query: 103 GGRTIVCTIHQPSATI 118
            GRT +   H+ S T+
Sbjct: 574 EGRTTIVIAHRLS-TV 588

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306

 Score = 60.7 bits (148), Expect = 2e-11
 Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 2/65 (3%)

Query: 54  RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQ 113
           +LSGG+K+R++IA  ++  P I+ LDE T+ LD+++     A L  +    RT +   H+
Sbjct: 190 KLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA-NRTTIVVAHR 248

Query: 114 PSATI 118
            S T+
Sbjct: 249 LS-TV 252

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271

 Score = 59.1 bits (144), Expect = 6e-11
 Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 8/76 (10%)

Query: 49  HTLCG----RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTN--QCVAMLKALAR 102
            T  G    +LSGGQ++ +++A  LI  P ++ LD  T+ LD+ +    Q   + ++   
Sbjct: 147 DTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQ-RLLYESPEW 205

Query: 103 GGRTIVCTIHQPSATI 118
             RT++    Q S   
Sbjct: 206 ASRTVLLITQQLS-LA 220

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243

 Score = 58.6 bits (143), Expect = 7e-11
 Identities = 24/55 (43%), Positives = 35/55 (63%)

Query: 54  RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIV 108
           ++SGGQ++RL+IA   + NP I+ LDE T  LDS S +     L +L +G  T+V
Sbjct: 139 KISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLV 193

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263

 Score = 58.0 bits (141), Expect = 1e-10
 Identities = 32/83 (38%), Positives = 43/83 (51%), Gaps = 7/83 (8%)

Query: 39  LDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLK 98
           LD +GL    H     LSGGQ +R++IA  L   P IM  DEPT+ LD     + ++++K
Sbjct: 144 LDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMK 203

Query: 99  ALARGGRTIVCTIHQPSATIFEM 121
            LA  G T+V   H       EM
Sbjct: 204 QLANEGMTMVVVTH-------EM 219

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263

 Score = 58.1 bits (141), Expect = 1e-10
 Identities = 21/92 (22%), Positives = 35/92 (38%), Gaps = 20/92 (21%)

Query: 25  VDDILDTIGLVDDILDTIGLVLSKHTLCGR----LSGGQKKRLSIALELIDNPPIMFLDE 80
             ++L  + L ++IL              R    LS GQ   +  +L L   P I+ LDE
Sbjct: 108 FLEMLKALKLGEEILR-------------RKLYKLSAGQSVLVRTSLALASQPEIVGLDE 154

Query: 81  PTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112
           P   +D+   +     +K     G+  +   H
Sbjct: 155 PFENVDAARRHVISRYIKEY---GKEGILVTH 183

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249

 Score = 57.6 bits (140), Expect = 2e-10
 Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 7/86 (8%)

Query: 34  LVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIA-------LELIDNPPIMFLDEPTTGLD 86
           L++D+   + L         +LSGG+ +R+ +A        +      ++ LDEP   LD
Sbjct: 106 LLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLD 165

Query: 87  SNSTNQCVAMLKALARGGRTIVCTIH 112
               +    +L AL++ G  IV + H
Sbjct: 166 VAQQSALDKILSALSQQGLAIVMSSH 191

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247

 Score = 56.7 bits (138), Expect = 3e-10
 Identities = 22/64 (34%), Positives = 38/64 (59%), Gaps = 4/64 (6%)

Query: 49  HTLCG----RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGG 104
           +T+ G     LSGGQ++R++IA  L++NP I+  DE T+ LD  S +  +  +  + +G 
Sbjct: 136 NTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGR 195

Query: 105 RTIV 108
             I+
Sbjct: 196 TVII 199

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257

 Score = 56.7 bits (138), Expect = 3e-10
 Identities = 21/74 (28%), Positives = 32/74 (43%)

Query: 35  VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
              IL+ + L        G LSGGQ K + I   L+ NP ++ +DEP  G+     +   
Sbjct: 134 AFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIF 193

Query: 95  AMLKALARGGRTIV 108
             +  L   G T +
Sbjct: 194 NHVLELKAKGITFL 207

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366

 Score = 56.9 bits (138), Expect = 4e-10
 Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 1/80 (1%)

Query: 35  VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
           V ++L  +GL     +    LSGGQK+R++IA  L  NP ++  D+ T+ LD  +T   +
Sbjct: 144 VTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSIL 203

Query: 95  AMLKAL-ARGGRTIVCTIHQ 113
            +LK +  R G TI+   H+
Sbjct: 204 ELLKDINRRLGLTILLITHE 223

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262

 Score = 56.4 bits (137), Expect = 5e-10
 Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 7/69 (10%)

Query: 53  GRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112
             LSGGQ++R+SIA  L   P ++  DEPT+ LD     + + +++ LA  G+T+V   H
Sbjct: 152 VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTH 211

Query: 113 QPSATIFEM 121
                  EM
Sbjct: 212 -------EM 213

>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148

 Score = 54.0 bits (130), Expect = 1e-09
 Identities = 17/85 (20%), Positives = 31/85 (36%), Gaps = 10/85 (11%)

Query: 34  LVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALEL------IDNPPIMFLDEPTTGLDS 87
            V   +   G       L    SGG++  L +A  L           ++ LDEPT  LD 
Sbjct: 41  KVRLFVVWEGKERPLTFL----SGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDE 96

Query: 88  NSTNQCVAMLKALARGGRTIVCTIH 112
               + + +++   +    ++   H
Sbjct: 97  ERRRKLITIMERYLKKIPQVILVSH 121

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582

 Score = 53.7 bits (130), Expect = 7e-09
 Identities = 18/36 (50%), Positives = 27/36 (75%)

Query: 54  RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNS 89
            LSGGQ++R++IA  L+ + PI+ LDE T+ LD+ S
Sbjct: 480 LLSGGQRQRIAIARALLRDSPILILDEATSALDTES 515

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582

 Score = 53.4 bits (129), Expect = 9e-09
 Identities = 17/36 (47%), Positives = 27/36 (75%)

Query: 54  RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNS 89
            LSGGQ++R++IA  L+ + P++ LDE T+ LD+ S
Sbjct: 480 SLSGGQRQRVAIARALLRDAPVLILDEATSALDTES 515

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578

 Score = 53.0 bits (128), Expect = 1e-08
 Identities = 26/53 (49%), Positives = 35/53 (66%), Gaps = 1/53 (1%)

Query: 54  RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRT 106
           +LSGGQK+RLSIA   ++NPPI+ LDE T+ LD  S +     L  L++  RT
Sbjct: 477 KLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK-DRT 528

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* Length = 371

 Score = 49.8 bits (119), Expect = 1e-07
 Identities = 18/78 (23%), Positives = 36/78 (46%), Gaps = 10/78 (12%)

Query: 55  LSGGQKKRLSIALEL-------IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTI 107
           LSGG++  ++++L L        +    + LDEPT  LD N   +   + + +    + I
Sbjct: 281 LSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMI 340

Query: 108 VCTIHQPSATIFEMVDHL 125
           + T H     + ++ D +
Sbjct: 341 IIT-HHRE--LEDVADVI 355

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* Length = 365

 Score = 44.5 bits (105), Expect = 7e-06
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 12/62 (19%)

Query: 55  LSGGQKKRLSIALEL---------IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGR 105
           LSGG++  +SI+L +         +D     F+DE  + LD+ +  +  ++LK L R  +
Sbjct: 280 LSGGERALISISLAMSLAEVASGRLD---AFFIDEGFSSLDTENKEKIASVLKELERLNK 336

Query: 106 TI 107
            I
Sbjct: 337 VI 338

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587

 Score = 42.5 bits (101), Expect = 4e-05
 Identities = 16/32 (50%), Positives = 23/32 (71%)

Query: 55  LSGGQKKRLSIALELIDNPPIMFLDEPTTGLD 86
            SGGQK+RLSIA  L+  P ++ LD+ T+ +D
Sbjct: 480 FSGGQKQRLSIARALVKKPKVLILDDCTSSVD 511

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240

 Score = 42.1 bits (100), Expect = 4e-05
 Identities = 16/52 (30%), Positives = 32/52 (61%)

Query: 35  VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLD 86
           V ++ + +G+         RLSGG+++R+++A  L+  P ++ LDEP + +D
Sbjct: 107 VREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVD 158

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598

 Score = 39.5 bits (93), Expect = 4e-04
 Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 5/56 (8%)

Query: 53  GRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV--AMLKALARGGRT 106
             LS GQ++ L+I    + NP I+ LDE T+ +D+  T + +  AM K +   G+T
Sbjct: 490 EDLSQGQRQLLAITRAFLANPKILILDEATSNVDTK-TEKSIQAAMWKLME--GKT 542

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	203
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	99.97
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	99.97
1b0u_A	262	Histidine permease; ABC transporter, transport pro	99.97
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	99.97
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	99.97
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	99.97
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	99.97
1g6h_A	257	High-affinity branched-chain amino acid transport	99.97
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	99.97
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	99.97
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	99.97
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	99.96
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	99.96
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	99.96
1ji0_A	240	ABC transporter; ATP binding protein, structural g	99.96
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	99.96
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	99.96
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	99.96
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	99.96
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	99.96
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	99.96
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	99.96
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	99.96
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	99.96
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	99.96
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	99.96
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	99.95
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	99.95
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	99.94
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	99.94
2ghi_A	260	Transport protein; multidrug resistance protein, M	99.94
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	99.93
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	99.93
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	99.93
1sgw_A	214	Putative ABC transporter; structural genomics, P p	99.93
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	99.92
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.92
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.92
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.92
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.92
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.92
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	99.91
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	99.91
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	99.91
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	99.91
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	99.91
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	99.9
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	99.9
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.9
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.9
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.89
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.89
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	99.89
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.89
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.88
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	99.88
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	99.87
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	99.87
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.87
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	99.87
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	99.87
1f2t_B	148	RAD50 ABC-ATPase; DNA double-strand break repair,	99.86
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	99.86
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	99.86
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.86
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	99.85
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.85
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.85
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.85
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	99.81
1e69_A	322	Chromosome segregation SMC protein; structural mai	99.76
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	99.75
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	99.74
3kta_B	173	Chromosome segregation protein SMC; structural mai	99.72
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	99.7
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	99.65
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	99.64
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	99.63
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	99.63
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	99.61
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	99.49
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	99.43
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	99.31
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	99.3
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	99.16
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	99.15
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	99.14
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	99.09
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	99.08
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	98.98
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	98.96
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	98.93
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	98.91
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	98.87
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	98.83
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	98.8
2og2_A	359	Putative signal recognition particle receptor; nuc	98.78
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	98.76
2cvh_A	220	DNA repair and recombination protein RADB; filamen	98.69
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	98.67
4a74_A	231	DNA repair and recombination protein RADA; hydrola	98.66
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	98.65
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	98.65
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	98.5
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	98.49
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	98.48
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	98.47
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	98.45
2eyu_A	261	Twitching motility protein PILT; pilus retraction	98.37
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	98.28
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	98.26
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	98.22
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	98.2
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	98.04
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	98.01
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	97.95
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	97.84
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	97.81
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	97.8
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	97.76
2r6a_A	454	DNAB helicase, replicative helicase; replication,	97.47
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	97.41
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	97.38
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	97.37
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	97.28
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	97.27
2ewv_A	372	Twitching motility protein PILT; pilus retraction	97.26
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	97.26
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	97.0
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	96.97
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	96.68
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	96.58
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	96.55
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	96.53
2xau_A	773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	96.16
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	96.01
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	95.99
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	95.96
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	95.7
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	95.55
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	95.47
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	95.36
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	95.13
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	95.02
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	94.51
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	94.47
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	94.17
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	92.79
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	92.46
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	92.18
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	91.86
1sgw_A	214	Putative ABC transporter; structural genomics, P p	91.71
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	91.66
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	90.87
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	90.65
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	90.39
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	90.18
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	88.95
1g5t_A	196	COB(I)alamin adenosyltransferase; P-loop protein,	88.35
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	88.33
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	87.79
2eyu_A	261	Twitching motility protein PILT; pilus retraction	87.25
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	87.25
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	86.04
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	85.61
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	84.63
1p9r_A	418	General secretion pathway protein E; bacterial typ	84.11
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	84.04
2ewv_A	372	Twitching motility protein PILT; pilus retraction	83.95
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	83.94
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	83.35
3bgw_A	444	DNAB-like replicative helicase; ATPase, replicatio	83.35
2z43_A	324	DNA repair and recombination protein RADA; archaea	82.95
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	82.6
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	81.96
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	80.8
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	80.8
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	80.46
1tk9_A	188	Phosphoheptose isomerase 1; lipopolysaccharide bio	80.12

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=99.97  E-value=1.3e-31  Score=232.36  Aligned_cols=135  Identities=28%  Similarity=0.356  Sum_probs=118.4

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCC
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP   74 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~   74 (203)
                      ...|.||....+++ .+||.|++..            .+++.++++.+||.+..++++.+|||||||||+|||||+.+|+
T Consensus        85 ~ig~v~Q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~  163 (275)
T 3gfo_A           85 SIGIVFQDPDNQLF-SASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPK  163 (275)
T ss_dssp             SEEEECSSGGGTCC-SSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred             cEEEEEcCcccccc-cCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCC
Confidence            46677876544444 6899887632            4578899999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEee
Q psy8397          75 IMFLDEPTTGLDSNSTNQCVAMLKALA-RGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTI  153 (203)
Q Consensus        75 vLlLDEPt~gLD~~~~~~i~~~l~~l~-~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~  153 (203)
                      +|||||||+|||+.++..+++.|++++ ++|.|||++||++++                                     
T Consensus       164 lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~-------------------------------------  206 (275)
T 3gfo_A          164 VLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDI-------------------------------------  206 (275)
T ss_dssp             EEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSS-------------------------------------
T ss_pred             EEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHH-------------------------------------
Confidence            999999999999999999999999997 558899999998763                                     


Q ss_pred             cCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         154 HQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       154 h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                            +..+||++++|++|++++.|+++++.
T Consensus       207 ------~~~~~drv~~l~~G~i~~~g~~~~~~  232 (275)
T 3gfo_A          207 ------VPLYCDNVFVMKEGRVILQGNPKEVF  232 (275)
T ss_dssp             ------GGGGCSEEEEEETTEEEEEECHHHHT
T ss_pred             ------HHHhCCEEEEEECCEEEEECCHHHHh
Confidence                  56899999999999999999998875

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=99.97  E-value=5e-31  Score=237.49  Aligned_cols=135  Identities=25%  Similarity=0.365  Sum_probs=118.1

Q ss_pred             CceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCC
Q psy8397           6 HGTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNP   73 (203)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P   73 (203)
                      ....+.||.+.  ++..+||.|++..            ++++.++|+.+||.+..++++.+|||||||||+|||||+.+|
T Consensus       105 ~~Ig~v~Q~~~--l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P  182 (366)
T 3tui_C          105 RQIGMIFQHFN--LLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNP  182 (366)
T ss_dssp             TTEEEECSSCC--CCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCC
T ss_pred             CcEEEEeCCCc--cCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence            35678887643  5677899997642            457889999999999999999999999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEe
Q psy8397          74 PIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCT  152 (203)
Q Consensus        74 ~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~  152 (203)
                      ++|||||||+|||+.++..+++.|++++++ |.|||++||+++                                     
T Consensus       183 ~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~-------------------------------------  225 (366)
T 3tui_C          183 KVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMD-------------------------------------  225 (366)
T ss_dssp             SEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-------------------------------------
T ss_pred             CEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-------------------------------------
Confidence            999999999999999999999999999754 777777777753                                     


Q ss_pred             ecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         153 IHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       153 ~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                            .+..+||++++|++|++++.|++++++
T Consensus       226 ------~~~~~aDrv~vl~~G~iv~~g~~~ev~  252 (366)
T 3tui_C          226 ------VVKRICDCVAVISNGELIEQDTVSEVF  252 (366)
T ss_dssp             ------HHHHHCSEEEEEETTEEEECCBHHHHH
T ss_pred             ------HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence                  477899999999999999999998765

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=99.97  E-value=1.1e-30  Score=224.32  Aligned_cols=133  Identities=23%  Similarity=0.348  Sum_probs=115.0

Q ss_pred             eeEEEeeecccccCCCCHhHHHhH-------------HHHHHHHHHHcCCccc-ccccCCCCCHHHHHHHHHHHHHhcCC
Q psy8397           8 TIWCWQIISAQYSHRISVDDILDT-------------IGLVDDILDTIGLVLS-KHTLCGRLSGGQKKRLSIALELIDNP   73 (203)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~v~~~L~~~~L~~~-~~~~v~~LSgGqrqrl~iA~aL~~~P   73 (203)
                      ..|.||..  .++..+||.|++..             .+++.++++.+||.+. .++++.+|||||||||+|||||+.+|
T Consensus        95 i~~v~Q~~--~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lAraL~~~p  172 (262)
T 1b0u_A           95 LTMVFQHF--NLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEP  172 (262)
T ss_dssp             EEEECSSC--CCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCC
T ss_pred             eEEEecCc--ccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence            56677653  35567899887643             2467889999999998 99999999999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEee
Q psy8397          74 PIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTI  153 (203)
Q Consensus        74 ~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~  153 (203)
                      ++|||||||+|||+.++..+++.|++++++|.|||++||+++                                      
T Consensus       173 ~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~--------------------------------------  214 (262)
T 1b0u_A          173 DVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG--------------------------------------  214 (262)
T ss_dssp             SEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHH--------------------------------------
T ss_pred             CEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH--------------------------------------
Confidence            999999999999999999999999999866778888888753                                      


Q ss_pred             cCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         154 HQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       154 h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                           .+..+||++++|++|++++.|+++++.
T Consensus       215 -----~~~~~~d~v~~l~~G~i~~~g~~~~~~  241 (262)
T 1b0u_A          215 -----FARHVSSHVIFLHQGKIEEEGDPEQVF  241 (262)
T ss_dssp             -----HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred             -----HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence                 367899999999999999999988764

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=99.97  E-value=2.2e-30  Score=223.24  Aligned_cols=133  Identities=27%  Similarity=0.399  Sum_probs=115.1

Q ss_pred             eeEEEeeecccccCCCCHhHHHhH-------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCC
Q psy8397           8 TIWCWQIISAQYSHRISVDDILDT-------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP   74 (203)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~   74 (203)
                      ..|.+|..  .++..+||.|++..             .+++.++++.+||.+..++++.+|||||||||+|||||+.+|+
T Consensus       102 i~~v~Q~~--~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~  179 (263)
T 2olj_A          102 VGMVFQRF--NLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPK  179 (263)
T ss_dssp             EEEECSSC--CCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred             EEEEeCCC--cCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCC
Confidence            45667643  35567899887643             2467889999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeec
Q psy8397          75 IMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIH  154 (203)
Q Consensus        75 vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h  154 (203)
                      +|||||||+|||+.++..+++.|++++++|.|||++||+++                                       
T Consensus       180 lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~---------------------------------------  220 (263)
T 2olj_A          180 IMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMG---------------------------------------  220 (263)
T ss_dssp             EEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHH---------------------------------------
T ss_pred             EEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH---------------------------------------
Confidence            99999999999999999999999999866788888888753                                       


Q ss_pred             CchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         155 QPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       155 ~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                          .+..+||++++|++|++++.|+++++.
T Consensus       221 ----~~~~~~d~v~~l~~G~i~~~g~~~~~~  247 (263)
T 2olj_A          221 ----FAREVGDRVLFMDGGYIIEEGKPEDLF  247 (263)
T ss_dssp             ----HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred             ----HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence                367899999999999999999988764

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=99.97  E-value=1.4e-30  Score=234.00  Aligned_cols=135  Identities=21%  Similarity=0.286  Sum_probs=117.6

Q ss_pred             CceeEEEeeecccccCCCCHhHHHh------------HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCC
Q psy8397           6 HGTIWCWQIISAQYSHRISVDDILD------------TIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNP   73 (203)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P   73 (203)
                      ....+.||..  .+++.+||.|++.            .++++.++++.+||.+..++++.+|||||||||+|||||+.+|
T Consensus        80 r~ig~vfQ~~--~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P  157 (359)
T 3fvq_A           80 RRLGYLVQEG--VLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDP  157 (359)
T ss_dssp             SCCEEECTTC--CCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred             CCEEEEeCCC--cCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence            4567888754  3567799999763            3567899999999999999999999999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEe
Q psy8397          74 PIMFLDEPTTGLDSNSTNQCVAMLKALAR-GGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCT  152 (203)
Q Consensus        74 ~vLlLDEPt~gLD~~~~~~i~~~l~~l~~-~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~  152 (203)
                      ++|||||||+|||+..+..+++.++++.+ .|.|+|++|||++                                     
T Consensus       158 ~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~-------------------------------------  200 (359)
T 3fvq_A          158 ELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDRE-------------------------------------  200 (359)
T ss_dssp             SEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHH-------------------------------------
T ss_pred             CEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-------------------------------------
Confidence            99999999999999999999998888754 4777777777754                                     


Q ss_pred             ecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         153 IHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       153 ~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                            ++..+||||++|++|+++..|+++++.
T Consensus       201 ------ea~~~aDri~vl~~G~i~~~g~~~el~  227 (359)
T 3fvq_A          201 ------EALQYADRIAVMKQGRILQTASPHELY  227 (359)
T ss_dssp             ------HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred             ------HHHHHCCEEEEEECCEEEEEeCHHHHH
Confidence                  467899999999999999999998875

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=99.97  E-value=2.5e-30  Score=233.97  Aligned_cols=135  Identities=23%  Similarity=0.366  Sum_probs=119.2

Q ss_pred             CceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCC
Q psy8397           6 HGTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNP   73 (203)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P   73 (203)
                      ....+.||..  .+++.+||.|++..            ++++.++++.+||.+..++++.+|||||||||+|||||+.+|
T Consensus        75 r~ig~VfQ~~--~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P  152 (381)
T 3rlf_A           75 RGVGMVFQSY--ALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEP  152 (381)
T ss_dssp             SCEEEECTTC--CCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCC
T ss_pred             CCEEEEecCC--cCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCC
Confidence            4567888764  35677999997643            457899999999999999999999999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEe
Q psy8397          74 PIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCT  152 (203)
Q Consensus        74 ~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~  152 (203)
                      ++|||||||+|||+..+..+++.|+++.++ |.|+|++||+++                                     
T Consensus       153 ~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-------------------------------------  195 (381)
T 3rlf_A          153 SVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-------------------------------------  195 (381)
T ss_dssp             SEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH-------------------------------------
T ss_pred             CEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-------------------------------------
Confidence            999999999999999999999999999765 788888888754                                     


Q ss_pred             ecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         153 IHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       153 ~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                            ++..+||+|++|++|+++..|+++++.
T Consensus       196 ------ea~~~aDri~vl~~G~i~~~g~~~~l~  222 (381)
T 3rlf_A          196 ------EAMTLADKIVVLDAGRVAQVGKPLELY  222 (381)
T ss_dssp             ------HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred             ------HHHHhCCEEEEEECCEEEEEeCHHHHH
Confidence                  478899999999999999999998875

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=99.97  E-value=4.4e-30  Score=217.26  Aligned_cols=132  Identities=23%  Similarity=0.338  Sum_probs=110.2

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH---------------HHHHHHHHHHcCCccc-ccccCCCCCHHHHHHHHHHHHHh
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT---------------IGLVDDILDTIGLVLS-KHTLCGRLSGGQKKRLSIALELI   70 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~v~~~L~~~~L~~~-~~~~v~~LSgGqrqrl~iA~aL~   70 (203)
                      ...|.||..  .+++.+||.|++..               .+++.++++.+++.+. .++++.+|||||||||+|||||+
T Consensus        84 ~i~~v~Q~~--~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~  161 (235)
T 3tif_A           84 KIGFVFQQF--NLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALA  161 (235)
T ss_dssp             HEEEECTTC--CCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHT
T ss_pred             cEEEEecCC--ccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHH
Confidence            356777653  35667899887532               3467889999999875 49999999999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceE
Q psy8397          71 DNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTI  149 (203)
Q Consensus        71 ~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tv  149 (203)
                      .+|++|||||||+|||+.++..+++.|++++++ |+|||++||+++                                  
T Consensus       162 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~----------------------------------  207 (235)
T 3tif_A          162 NNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN----------------------------------  207 (235)
T ss_dssp             TCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH----------------------------------
T ss_pred             cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHH----------------------------------
Confidence            999999999999999999999999999999754 777777777742                                  


Q ss_pred             EEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccc
Q psy8397         150 VCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANT  184 (203)
Q Consensus       150 i~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~  184 (203)
                                +..+||++++|++|+++..++++++
T Consensus       208 ----------~~~~~d~i~~l~~G~i~~~~~~~~~  232 (235)
T 3tif_A          208 ----------VARFGERIIYLKDGEVEREEKLRGF  232 (235)
T ss_dssp             ----------HHTTSSEEEEEETTEEEEEEECC--
T ss_pred             ----------HHHhCCEEEEEECCEEEEEcChhhh
Confidence                      3478999999999999999988765

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=99.97  E-value=4.3e-30  Score=219.78  Aligned_cols=108  Identities=27%  Similarity=0.445  Sum_probs=100.8

Q ss_pred             HHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEec
Q psy8397          33 GLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH  112 (203)
Q Consensus        33 ~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH  112 (203)
                      +++.++++.+||.+..++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|.|||++||
T Consensus       132 ~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtH  211 (257)
T 1g6h_A          132 EKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEH  211 (257)
T ss_dssp             HHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred             HHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEec
Confidence            46788999999999999999999999999999999999999999999999999999999999999999877888888888


Q ss_pred             CCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCccc
Q psy8397         113 QPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSAN  183 (203)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~  183 (203)
                      ++++                                           +..+||++++|++|++++.|++++
T Consensus       212 d~~~-------------------------------------------~~~~~d~v~~l~~G~i~~~g~~~~  239 (257)
T 1g6h_A          212 RLDI-------------------------------------------VLNYIDHLYVMFNGQIIAEGRGEE  239 (257)
T ss_dssp             CCST-------------------------------------------TGGGCSEEEEEETTEEEEEEESHH
T ss_pred             CHHH-------------------------------------------HHHhCCEEEEEECCEEEEEeCHHH
Confidence            8753                                           567999999999999999999888

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=99.97  E-value=2.4e-30  Score=220.02  Aligned_cols=134  Identities=22%  Similarity=0.308  Sum_probs=114.5

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH----------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEE
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT----------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIM   76 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vL   76 (203)
                      ...|.+|..  .+++.+||.|++..          .+++.++++.+||.+..++++++||||||||++|||||+.+|++|
T Consensus        71 ~i~~v~q~~--~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ll  148 (240)
T 2onk_A           71 GIGFVPQDY--ALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLL  148 (240)
T ss_dssp             CCBCCCSSC--CCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSB
T ss_pred             cEEEEcCCC--ccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence            345666643  34567899887532          356889999999999999999999999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecC
Q psy8397          77 FLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQ  155 (203)
Q Consensus        77 lLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~  155 (203)
                      ||||||+|||+.++..+++.|++++++ |+|||++||+++                                        
T Consensus       149 lLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~----------------------------------------  188 (240)
T 2onk_A          149 LLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI----------------------------------------  188 (240)
T ss_dssp             EEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHH----------------------------------------
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH----------------------------------------
Confidence            999999999999999999999999754 778888887753                                        


Q ss_pred             chhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         156 PSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       156 ~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                         .+..+||++++|++|++++.|+++++.
T Consensus       189 ---~~~~~~d~i~~l~~G~i~~~g~~~~~~  215 (240)
T 2onk_A          189 ---EAAMLADEVAVMLNGRIVEKGKLKELF  215 (240)
T ss_dssp             ---HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred             ---HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence               367899999999999999999987764

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=99.97  E-value=1e-29  Score=218.54  Aligned_cols=134  Identities=26%  Similarity=0.422  Sum_probs=115.0

Q ss_pred             eeEEEeeecccccCCCCHhHHHhH-----------HHHHHHHHHHcCCc--ccccccCCCCCHHHHHHHHHHHHHhcCCC
Q psy8397           8 TIWCWQIISAQYSHRISVDDILDT-----------IGLVDDILDTIGLV--LSKHTLCGRLSGGQKKRLSIALELIDNPP   74 (203)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~v~~~L~~~~L~--~~~~~~v~~LSgGqrqrl~iA~aL~~~P~   74 (203)
                      ..|.+|.....+ ..+||.|++..           .+++.++++.+||.  +..++++.+|||||||||+|||||+.+|+
T Consensus        80 i~~v~q~~~~~~-~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~  158 (266)
T 2yz2_A           80 IGIAFQYPEDQF-FAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPD  158 (266)
T ss_dssp             EEEECSSGGGGC-CCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred             EEEEeccchhhc-CCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCC
Confidence            556666532233 45799887643           35688999999999  89999999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeec
Q psy8397          75 IMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIH  154 (203)
Q Consensus        75 vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h  154 (203)
                      +|||||||+|||+.++..+++.|++++++|.|||++||++++                                      
T Consensus       159 lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~--------------------------------------  200 (266)
T 2yz2_A          159 ILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIET--------------------------------------  200 (266)
T ss_dssp             EEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTT--------------------------------------
T ss_pred             EEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH--------------------------------------
Confidence            999999999999999999999999998668888888888753                                      


Q ss_pred             CchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         155 QPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       155 ~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                           +..+||++++|++|++++.|+++++.
T Consensus       201 -----~~~~~d~v~~l~~G~i~~~g~~~~~~  226 (266)
T 2yz2_A          201 -----VINHVDRVVVLEKGKKVFDGTRMEFL  226 (266)
T ss_dssp             -----TGGGCSEEEEEETTEEEEEEEHHHHH
T ss_pred             -----HHHhCCEEEEEECCEEEEeCCHHHHh
Confidence                 56789999999999999999887764

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=99.97  E-value=1.2e-29  Score=213.05  Aligned_cols=129  Identities=23%  Similarity=0.330  Sum_probs=109.8

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCC
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP   74 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~   74 (203)
                      ...|.+|..  .++..+||.|++..            .+++.++++.+||.+..++++.+|||||||||+|||||+.+|+
T Consensus        83 ~i~~v~q~~--~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~  160 (224)
T 2pcj_A           83 KLGFVFQFH--YLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPI  160 (224)
T ss_dssp             HEEEECSSC--CCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCS
T ss_pred             cEEEEecCc--ccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCC
Confidence            355666643  34567899987632            3467889999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeec
Q psy8397          75 IMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIH  154 (203)
Q Consensus        75 vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h  154 (203)
                      +|||||||+|||+.++..+++.|++++++|.|||++||+++                                       
T Consensus       161 lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~---------------------------------------  201 (224)
T 2pcj_A          161 LLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERE---------------------------------------  201 (224)
T ss_dssp             EEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH---------------------------------------
T ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH---------------------------------------
Confidence            99999999999999999999999999866777777777742                                       


Q ss_pred             CchhHHHhhcCEEEEEeCCeEEeeCCc
Q psy8397         155 QPSATIFEMVDHLYVIAEGHCVYKGSS  181 (203)
Q Consensus       155 ~~~~~i~~~~d~v~vl~~G~i~~~g~~  181 (203)
                          .+ .+||++++|++|++++.|+.
T Consensus       202 ----~~-~~~d~v~~l~~G~i~~~g~~  223 (224)
T 2pcj_A          202 ----LA-ELTHRTLEMKDGKVVGEITR  223 (224)
T ss_dssp             ----HH-TTSSEEEEEETTEEEEEEEC
T ss_pred             ----HH-HhCCEEEEEECCEEEEEeee
Confidence                24 78999999999999998863

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.96  E-value=9.7e-30  Score=218.30  Aligned_cols=133  Identities=23%  Similarity=0.274  Sum_probs=114.9

Q ss_pred             eeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCE
Q psy8397           8 TIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPI   75 (203)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~v   75 (203)
                      ..|.+|..  .++..+||.|++..            .+++.++++.+||.+..++++++|||||||||+|||||+.+|++
T Consensus        90 i~~v~q~~--~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~l  167 (256)
T 1vpl_A           90 ISYLPEEA--GAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRL  167 (256)
T ss_dssp             EEEECTTC--CCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSE
T ss_pred             EEEEcCCC--CCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence            45666643  34567899997643            24578899999999999999999999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecC
Q psy8397          76 MFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQ  155 (203)
Q Consensus        76 LlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~  155 (203)
                      |||||||+|||+.++..+++.|++++++|+|||++||+++                                        
T Consensus       168 llLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~----------------------------------------  207 (256)
T 1vpl_A          168 AILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML----------------------------------------  207 (256)
T ss_dssp             EEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH----------------------------------------
T ss_pred             EEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH----------------------------------------
Confidence            9999999999999999999999999867888888888753                                        


Q ss_pred             chhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         156 PSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       156 ~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                         .+..+||++++|++|++++.|+++++.
T Consensus       208 ---~~~~~~d~v~~l~~G~i~~~g~~~~~~  234 (256)
T 1vpl_A          208 ---EVEFLCDRIALIHNGTIVETGTVEELK  234 (256)
T ss_dssp             ---HHTTTCSEEEEEETTEEEEEEEHHHHH
T ss_pred             ---HHHHHCCEEEEEECCEEEEecCHHHHH
Confidence               367889999999999999999887764

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=99.96  E-value=8e-30  Score=228.69  Aligned_cols=134  Identities=22%  Similarity=0.339  Sum_probs=116.9

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCC
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP   74 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~   74 (203)
                      ...+.||..  .+++.+||.|++..            ++++.++++.+||.+..++++.+|||||||||+|||||+.+|+
T Consensus        88 ~ig~v~Q~~--~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~  165 (355)
T 1z47_A           88 NVGLVFQNY--ALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQ  165 (355)
T ss_dssp             SEEEECGGG--CCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred             cEEEEecCc--ccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCC
Confidence            466777643  35677999997642            3568899999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEee
Q psy8397          75 IMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTI  153 (203)
Q Consensus        75 vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~  153 (203)
                      +|||||||+|||+..+..+++.|+++.++ |.|+|++||+++                                      
T Consensus       166 lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~--------------------------------------  207 (355)
T 1z47_A          166 VLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQE--------------------------------------  207 (355)
T ss_dssp             EEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHH--------------------------------------
T ss_pred             EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH--------------------------------------
Confidence            99999999999999999999999999764 778888888753                                      


Q ss_pred             cCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         154 HQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       154 h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                           ++..+||++++|++|+++..|+++++.
T Consensus       208 -----~a~~~adri~vl~~G~i~~~g~~~~l~  234 (355)
T 1z47_A          208 -----EALEVADRVLVLHEGNVEQFGTPEEVY  234 (355)
T ss_dssp             -----HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred             -----HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence                 467899999999999999999998774

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=99.96  E-value=7.9e-30  Score=228.30  Aligned_cols=135  Identities=21%  Similarity=0.383  Sum_probs=117.4

Q ss_pred             CceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCC
Q psy8397           6 HGTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNP   73 (203)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P   73 (203)
                      ....+.||..  .+++.+||.|++..            .+++.++++.+||.+..++++.+|||||||||+|||||+.+|
T Consensus        82 r~ig~v~Q~~--~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P  159 (353)
T 1oxx_K           82 RKIGMVFQTW--ALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDP  159 (353)
T ss_dssp             SCEEEEETTS--CCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred             CCEEEEeCCC--ccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCC
Confidence            3466778753  35677999997632            457889999999999999999999999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEe
Q psy8397          74 PIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCT  152 (203)
Q Consensus        74 ~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~  152 (203)
                      ++|||||||+|||+..+..+++.|+++.++ |.|+|++||+++                                     
T Consensus       160 ~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-------------------------------------  202 (353)
T 1oxx_K          160 SLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-------------------------------------  202 (353)
T ss_dssp             SEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-------------------------------------
T ss_pred             CEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-------------------------------------
Confidence            999999999999999999999999999754 778888888753                                     


Q ss_pred             ecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         153 IHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       153 ~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                            ++..+||++++|++|+++..|+++++.
T Consensus       203 ------~~~~~adri~vl~~G~i~~~g~~~~l~  229 (353)
T 1oxx_K          203 ------DIFAIADRVGVLVKGKLVQVGKPEDLY  229 (353)
T ss_dssp             ------HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred             ------HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence                  467899999999999999999998774

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.96  E-value=8.4e-30  Score=215.97  Aligned_cols=134  Identities=21%  Similarity=0.328  Sum_probs=114.4

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH-----------HHHHHHHHHHcC-CcccccccCCCCCHHHHHHHHHHHHHhcCCC
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT-----------IGLVDDILDTIG-LVLSKHTLCGRLSGGQKKRLSIALELIDNPP   74 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~v~~~L~~~~-L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~   74 (203)
                      ...|.+|..  .++..+|+.|++..           .++++++++.++ +.+..++++.+|||||||||+|||||+.+|+
T Consensus        82 ~i~~v~q~~--~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~  159 (240)
T 1ji0_A           82 GIALVPEGR--RIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPK  159 (240)
T ss_dssp             TEEEECSSC--CCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCS
T ss_pred             CEEEEecCC--ccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence            356777643  35567899887532           346778899994 9888999999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeec
Q psy8397          75 IMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIH  154 (203)
Q Consensus        75 vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h  154 (203)
                      +|||||||+|||+.++..+++.|++++++|+|||++||+++                                       
T Consensus       160 lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~---------------------------------------  200 (240)
T 1ji0_A          160 LLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL---------------------------------------  200 (240)
T ss_dssp             EEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH---------------------------------------
T ss_pred             EEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH---------------------------------------
Confidence            99999999999999999999999999867888888888753                                       


Q ss_pred             CchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         155 QPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       155 ~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                          .+..+||++++|++|++++.|+++++.
T Consensus       201 ----~~~~~~d~v~~l~~G~i~~~g~~~~~~  227 (240)
T 1ji0_A          201 ----GALKVAHYGYVLETGQIVLEGKASELL  227 (240)
T ss_dssp             ----HHHHHCSEEEEEETTEEEEEEEHHHHH
T ss_pred             ----HHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence                367899999999999999999888764

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=99.96  E-value=1.6e-29  Score=217.81  Aligned_cols=132  Identities=22%  Similarity=0.388  Sum_probs=113.1

Q ss_pred             eEEEeeecccccCCCCHhHHHh----------HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhc------C
Q psy8397           9 IWCWQIISAQYSHRISVDDILD----------TIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELID------N   72 (203)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~----------~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~------~   72 (203)
                      .+.+|..  .+...+||.|++.          .++++.++++.+++.+..++++.+|||||||||+|||||++      +
T Consensus        88 ~~v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~  165 (266)
T 4g1u_C           88 AVMRQYS--ELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPT  165 (266)
T ss_dssp             EEECSCC--CCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCC
T ss_pred             EEEecCC--ccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCC
Confidence            4455432  2445689998763          35678999999999999999999999999999999999999      9


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEE
Q psy8397          73 PPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVC  151 (203)
Q Consensus        73 P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~  151 (203)
                      |++|||||||+|||+.++..+++.|++++++ |+|||++||+++                                    
T Consensus       166 p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~------------------------------------  209 (266)
T 4g1u_C          166 PRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLN------------------------------------  209 (266)
T ss_dssp             CEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHH------------------------------------
T ss_pred             CCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHH------------------------------------
Confidence            9999999999999999999999999999754 457777777753                                    


Q ss_pred             eecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         152 TIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       152 ~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                             .+..+||++++|++|++++.|+++++.
T Consensus       210 -------~~~~~~d~v~vl~~G~i~~~g~~~~~~  236 (266)
T 4g1u_C          210 -------LAALYADRIMLLAQGKLVACGTPEEVL  236 (266)
T ss_dssp             -------HHHHHCSEEEEEETTEEEEEECHHHHC
T ss_pred             -------HHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence                   467899999999999999999999876

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=99.96  E-value=1.1e-29  Score=228.16  Aligned_cols=135  Identities=23%  Similarity=0.290  Sum_probs=117.5

Q ss_pred             CceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCC
Q psy8397           6 HGTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNP   73 (203)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P   73 (203)
                      ....+.||..  .+++.+||.|++..            ++++.++++.+||.+..++++++|||||||||+|||||+.+|
T Consensus        75 r~ig~v~Q~~--~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P  152 (359)
T 2yyz_A           75 REVGMVFQNY--ALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQP  152 (359)
T ss_dssp             TTEEEECSSC--CCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred             CcEEEEecCc--ccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence            3466777753  34577999998642            347889999999999999999999999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEe
Q psy8397          74 PIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCT  152 (203)
Q Consensus        74 ~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~  152 (203)
                      ++|||||||+|||+..+..+++.|+++.++ |.|+|++||+++                                     
T Consensus       153 ~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-------------------------------------  195 (359)
T 2yyz_A          153 KVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQA-------------------------------------  195 (359)
T ss_dssp             SEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHH-------------------------------------
T ss_pred             CEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-------------------------------------
Confidence            999999999999999999999999999764 778888888753                                     


Q ss_pred             ecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         153 IHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       153 ~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                            ++..+||++++|++|+++..|+++++.
T Consensus       196 ------~~~~~adri~vl~~G~i~~~g~~~~l~  222 (359)
T 2yyz_A          196 ------EAMTMASRIAVFNQGKLVQYGTPDEVY  222 (359)
T ss_dssp             ------HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred             ------HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence                  467899999999999999999998875

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=99.96  E-value=1.4e-29  Score=228.16  Aligned_cols=135  Identities=24%  Similarity=0.345  Sum_probs=117.5

Q ss_pred             CceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCC
Q psy8397           6 HGTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNP   73 (203)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P   73 (203)
                      ....|.||..  .+++.+||.|++..            ++++.++++.+||.+..++++.+|||||||||+|||||+.+|
T Consensus        81 r~ig~v~Q~~--~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P  158 (372)
T 1g29_1           81 RDIAMVFQSY--ALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKP  158 (372)
T ss_dssp             SSEEEECSCC--CCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCC
T ss_pred             CCEEEEeCCC--ccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence            3467778753  34577999997642            346889999999999999999999999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEe
Q psy8397          74 PIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCT  152 (203)
Q Consensus        74 ~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~  152 (203)
                      ++|||||||+|||+..+..+++.|+++.++ |.|+|++||+++                                     
T Consensus       159 ~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-------------------------------------  201 (372)
T 1g29_1          159 QVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-------------------------------------  201 (372)
T ss_dssp             SEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-------------------------------------
T ss_pred             CEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-------------------------------------
Confidence            999999999999999999999999999764 778888888753                                     


Q ss_pred             ecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         153 IHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       153 ~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                            ++..+||++++|++|+++..|+++++.
T Consensus       202 ------~a~~~adri~vl~~G~i~~~g~~~~l~  228 (372)
T 1g29_1          202 ------EAMTMGDRIAVMNRGVLQQVGSPDEVY  228 (372)
T ss_dssp             ------HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred             ------HHHHhCCEEEEEeCCEEEEeCCHHHHH
Confidence                  467899999999999999999998875

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=99.96  E-value=1.1e-29  Score=228.38  Aligned_cols=135  Identities=25%  Similarity=0.332  Sum_probs=117.4

Q ss_pred             CceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCC
Q psy8397           6 HGTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNP   73 (203)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P   73 (203)
                      ....+.||..  .+++.+||.|++..            +++++++++.+||.+..++++.+|||||||||+|||||+.+|
T Consensus        75 r~ig~v~Q~~--~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P  152 (362)
T 2it1_A           75 RNVGLVFQNW--ALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEP  152 (362)
T ss_dssp             TTEEEECTTC--CCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred             CcEEEEecCc--ccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCC
Confidence            3466777753  35577999997643            346889999999999999999999999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEe
Q psy8397          74 PIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCT  152 (203)
Q Consensus        74 ~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~  152 (203)
                      ++|||||||+|||+..+..+++.|+++.++ |.|+|++||+++                                     
T Consensus       153 ~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-------------------------------------  195 (362)
T 2it1_A          153 EVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQA-------------------------------------  195 (362)
T ss_dssp             SEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-------------------------------------
T ss_pred             CEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHH-------------------------------------
Confidence            999999999999999999999999999754 778888888753                                     


Q ss_pred             ecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         153 IHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       153 ~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                            ++..+||++++|++|+++..|+++++.
T Consensus       196 ------~a~~~adri~vl~~G~i~~~g~~~~~~  222 (362)
T 2it1_A          196 ------EALAMADRIAVIREGEILQVGTPDEVY  222 (362)
T ss_dssp             ------HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred             ------HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence                  467899999999999999999998875

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=99.96  E-value=6.1e-30  Score=222.01  Aligned_cols=136  Identities=21%  Similarity=0.378  Sum_probs=114.1

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH----------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHh
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT----------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELI   70 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~   70 (203)
                      ...|.+|.....+...+||.|++..                .+++.++++.+||.+..++++++|||||||||+|||||+
T Consensus        98 ~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~  177 (279)
T 2ihy_A           98 HIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALM  177 (279)
T ss_dssp             TEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHH
T ss_pred             cEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHh
Confidence            3556676433223345688886531                246788999999999999999999999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeE--EEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCce
Q psy8397          71 DNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTI--VCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRT  148 (203)
Q Consensus        71 ~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tv--i~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t  148 (203)
                      .+|++|||||||+|||+.++..+++.|++++++|+||  |++||+++                                 
T Consensus       178 ~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~---------------------------------  224 (279)
T 2ihy_A          178 GQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIE---------------------------------  224 (279)
T ss_dssp             TCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGG---------------------------------
T ss_pred             CCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHH---------------------------------
Confidence            9999999999999999999999999999997657788  88888764                                 


Q ss_pred             EEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         149 IVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       149 vi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                                .+..+||++++|++|++++.|+++++.
T Consensus       225 ----------~~~~~~d~v~~l~~G~i~~~g~~~~~~  251 (279)
T 2ihy_A          225 ----------EITANFSKILLLKDGQSIQQGAVEDIL  251 (279)
T ss_dssp             ----------GCCTTCCEEEEEETTEEEEEEEHHHHC
T ss_pred             ----------HHHHhCCEEEEEECCEEEEECCHHHHh
Confidence                      356789999999999999999988764

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=99.96  E-value=1.4e-29  Score=226.41  Aligned_cols=134  Identities=23%  Similarity=0.335  Sum_probs=116.2

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhHH---------HHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEE
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDTI---------GLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMF   77 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLl   77 (203)
                      ...+.||..  .+++.+||.|++...         +++.++++.++|.+..++++++|||||||||+|||||+.+|++||
T Consensus        73 ~ig~v~Q~~--~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLL  150 (348)
T 3d31_A           73 DIAFVYQNY--SLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILL  150 (348)
T ss_dssp             TCEEECTTC--CCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEE
T ss_pred             cEEEEecCc--ccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence            355777643  356779999986531         578899999999999999999999999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCc
Q psy8397          78 LDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQP  156 (203)
Q Consensus        78 LDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~  156 (203)
                      |||||+|||+..+..+++.|+++.++ |.|+|++||+++                                         
T Consensus       151 LDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-----------------------------------------  189 (348)
T 3d31_A          151 LDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT-----------------------------------------  189 (348)
T ss_dssp             EESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH-----------------------------------------
T ss_pred             EECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-----------------------------------------
Confidence            99999999999999999999999753 778888887753                                         


Q ss_pred             hhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         157 SATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       157 ~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                        ++..+||++++|++|+++..|+++++.
T Consensus       190 --~~~~~adri~vl~~G~i~~~g~~~~~~  216 (348)
T 3d31_A          190 --EARIMADRIAVVMDGKLIQVGKPEEIF  216 (348)
T ss_dssp             --HHHHHCSEEEEESSSCEEEEECHHHHH
T ss_pred             --HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence              467899999999999999999988764

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=99.96  E-value=1.6e-29  Score=227.86  Aligned_cols=134  Identities=20%  Similarity=0.276  Sum_probs=114.3

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCC
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP   74 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~   74 (203)
                      ...+.||...  +++.+||.|++..            ++++.++++.+||.+..++++.+|||||||||+|||||+.+|+
T Consensus        84 ~ig~v~Q~~~--l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~  161 (372)
T 1v43_A           84 NISMVFQSYA--VWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPD  161 (372)
T ss_dssp             TEEEEEC--------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCS
T ss_pred             cEEEEecCcc--cCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence            4667887533  4577899997632            3578899999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEee
Q psy8397          75 IMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTI  153 (203)
Q Consensus        75 vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~  153 (203)
                      +|||||||+|||+..+..+++.|+++.++ |.|+|++||+++                                      
T Consensus       162 lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~--------------------------------------  203 (372)
T 1v43_A          162 VLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV--------------------------------------  203 (372)
T ss_dssp             EEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH--------------------------------------
T ss_pred             EEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH--------------------------------------
Confidence            99999999999999999999999999765 778888888753                                      


Q ss_pred             cCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         154 HQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       154 h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                           ++..+||++++|++|+++..|+++++.
T Consensus       204 -----~a~~~adri~vl~~G~i~~~g~~~~l~  230 (372)
T 1v43_A          204 -----EAMTMGDRIAVMNRGQLLQIGSPTEVY  230 (372)
T ss_dssp             -----HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred             -----HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence                 467899999999999999999998875

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=99.96  E-value=4e-29  Score=213.65  Aligned_cols=133  Identities=21%  Similarity=0.323  Sum_probs=115.3

Q ss_pred             eeEEEeeecccccCCCCHhHHHhH-------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCC------
Q psy8397           8 TIWCWQIISAQYSHRISVDDILDT-------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP------   74 (203)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~-------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~------   74 (203)
                      ..|.+|..  .++..+||.|++..       .+++.++++.+||.+..++++.+||||||||++|||||+.+|+      
T Consensus        75 i~~v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~  152 (249)
T 2qi9_C           75 RAYLSQQQ--TPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAG  152 (249)
T ss_dssp             EEEECSCC--CCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTC
T ss_pred             EEEECCCC--ccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCC
Confidence            45666643  34566899987643       4678899999999999999999999999999999999999999      


Q ss_pred             -EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEee
Q psy8397          75 -IMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTI  153 (203)
Q Consensus        75 -vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~  153 (203)
                       +|||||||+|||+.++..+++.|+++.++|.|||++||+++                                      
T Consensus       153 ~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~--------------------------------------  194 (249)
T 2qi9_C          153 QLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLN--------------------------------------  194 (249)
T ss_dssp             CEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH--------------------------------------
T ss_pred             eEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH--------------------------------------
Confidence             99999999999999999999999999866788888888753                                      


Q ss_pred             cCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         154 HQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       154 h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                           .+..+||++++|++|++++.|+++++.
T Consensus       195 -----~~~~~~d~v~~l~~G~i~~~g~~~~~~  221 (249)
T 2qi9_C          195 -----HTLRHAHRAWLLKGGKMLASGRREEVL  221 (249)
T ss_dssp             -----HHHHHCSEEEEEETTEEEEEEEHHHHS
T ss_pred             -----HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence                 367899999999999999999888764

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=99.96  E-value=7e-29  Score=212.31  Aligned_cols=132  Identities=25%  Similarity=0.346  Sum_probs=112.0

Q ss_pred             eeEEEeeecccccCCCCHhHHHhH----------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhc
Q psy8397           8 TIWCWQIISAQYSHRISVDDILDT----------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELID   71 (203)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~   71 (203)
                      ..|.+|..  .++..+||.|++..                .+++.++++.+||.+..++++.+|||||||||+|||||+.
T Consensus        68 i~~v~q~~--~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~  145 (253)
T 2nq2_C           68 IGFVPQFF--SSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIAS  145 (253)
T ss_dssp             EEEECSCC--CCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHT
T ss_pred             EEEEcCCC--ccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHc
Confidence            44666543  34456788886521                3467889999999999999999999999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEE
Q psy8397          72 NPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIV  150 (203)
Q Consensus        72 ~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi  150 (203)
                      +|++|||||||+|||+.++..+++.|++++++ |.|||++||+++                                   
T Consensus       146 ~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-----------------------------------  190 (253)
T 2nq2_C          146 ECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPN-----------------------------------  190 (253)
T ss_dssp             TCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHH-----------------------------------
T ss_pred             CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-----------------------------------
Confidence            99999999999999999999999999999866 788888888753                                   


Q ss_pred             EeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         151 CTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       151 ~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                              .+..+||++++|++|+ ++.|+++++.
T Consensus       191 --------~~~~~~d~v~~l~~G~-~~~g~~~~~~  216 (253)
T 2nq2_C          191 --------QVVAIANKTLLLNKQN-FKFGETRNIL  216 (253)
T ss_dssp             --------HHHHHCSEEEEEETTE-EEEEEHHHHC
T ss_pred             --------HHHHhCCEEEEEeCCe-EecCCHHHHh
Confidence                    3678999999999999 9999888764

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=99.96  E-value=8.9e-29  Score=210.82  Aligned_cols=129  Identities=20%  Similarity=0.254  Sum_probs=104.4

Q ss_pred             eEEEeeecccccCCCCHhHHHhH---------------HHHHHHHHHHcCC-cccccccCCC-CCHHHHHHHHHHHHHhc
Q psy8397           9 IWCWQIISAQYSHRISVDDILDT---------------IGLVDDILDTIGL-VLSKHTLCGR-LSGGQKKRLSIALELID   71 (203)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~---------------~~~v~~~L~~~~L-~~~~~~~v~~-LSgGqrqrl~iA~aL~~   71 (203)
                      .+.+|..  .+++.+|+.|++..               .+++.++++.+|+ .+..++++++ |||||||||+|||||+.
T Consensus        83 ~~v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~  160 (250)
T 2d2e_A           83 FLAFQYP--VEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVL  160 (250)
T ss_dssp             CCCCCCC--C-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHH
T ss_pred             EEeccCC--ccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHc
Confidence            3555532  34566888886532               2457789999999 5889999999 99999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEE
Q psy8397          72 NPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVC  151 (203)
Q Consensus        72 ~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~  151 (203)
                      +|++|||||||+|||+.++..+++.|+++.++|+|||++||++++                                   
T Consensus       161 ~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~-----------------------------------  205 (250)
T 2d2e_A          161 EPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRI-----------------------------------  205 (250)
T ss_dssp             CCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGG-----------------------------------
T ss_pred             CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-----------------------------------
Confidence            999999999999999999999999999997668888888888652                                   


Q ss_pred             eecCchhHHHhh-cCEEEEEeCCeEEeeCCcc
Q psy8397         152 TIHQPSATIFEM-VDHLYVIAEGHCVYKGSSA  182 (203)
Q Consensus       152 ~~h~~~~~i~~~-~d~v~vl~~G~i~~~g~~~  182 (203)
                              +..+ ||++++|++|++++.|+++
T Consensus       206 --------~~~~~~d~v~~l~~G~i~~~g~~~  229 (250)
T 2d2e_A          206 --------LNYIQPDKVHVMMDGRVVATGGPE  229 (250)
T ss_dssp             --------GGTSCCSEEEEEETTEEEEEESHH
T ss_pred             --------HHHhcCCEEEEEECCEEEEEeCHH
Confidence                    4566 5999999999999999887

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=99.96  E-value=2.9e-28  Score=209.78  Aligned_cols=117  Identities=22%  Similarity=0.310  Sum_probs=100.3

Q ss_pred             HHHHHHHHHcCCc-ccccccCC-CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEE
Q psy8397          33 GLVDDILDTIGLV-LSKHTLCG-RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCT  110 (203)
Q Consensus        33 ~~v~~~L~~~~L~-~~~~~~v~-~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~  110 (203)
                      +++.++++.+||. ...++++. +|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++
T Consensus       141 ~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviiv  220 (267)
T 2zu0_C          141 DLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIV  220 (267)
T ss_dssp             HHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEE
T ss_pred             HHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEE
Confidence            4577899999996 57899997 599999999999999999999999999999999999999999999987668888888


Q ss_pred             ecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhh-cCEEEEEeCCeEEeeCCcccchhHHH
Q psy8397         111 IHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEM-VDHLYVIAEGHCVYKGSSANTIPYLQ  189 (203)
Q Consensus       111 tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~-~d~v~vl~~G~i~~~g~~~~~~~~~~  189 (203)
                      ||+++                                           .+..+ ||++++|++|++++.|+++++.. ++
T Consensus       221 tHd~~-------------------------------------------~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~  256 (267)
T 2zu0_C          221 THYQR-------------------------------------------ILDYIKPDYVHVLYQGRIVKSGDFTLVKQ-LE  256 (267)
T ss_dssp             CSSGG-------------------------------------------GGGTSCCSEEEEEETTEEEEEECTTHHHH-HH
T ss_pred             eeCHH-------------------------------------------HHHhhcCCEEEEEECCEEEEEcCHHHHhh-hh
Confidence            88864                                           24555 89999999999999999887643 34


Q ss_pred             hcCC
Q psy8397         190 TIGL  193 (203)
Q Consensus       190 ~~g~  193 (203)
                      ..++
T Consensus       257 ~~~~  260 (267)
T 2zu0_C          257 EQGY  260 (267)
T ss_dssp             TTTC
T ss_pred             hcch
Confidence            4443

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=99.95  E-value=7.9e-28  Score=207.25  Aligned_cols=118  Identities=19%  Similarity=0.223  Sum_probs=105.8

Q ss_pred             CCCHhHHHhH--------HHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHH
Q psy8397          22 RISVDDILDT--------IGLVDDILDTIGLV-LSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQ   92 (203)
Q Consensus        22 ~~~~~~~~~~--------~~~v~~~L~~~~L~-~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~   92 (203)
                      .+|+.|++..        .+++.++++.+||. +..++++++||||||||++|||||+.+|++|||||||+|||+.++..
T Consensus        87 ~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~  166 (263)
T 2pjz_A           87 GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHV  166 (263)
T ss_dssp             TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHH
T ss_pred             CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHH
Confidence            7899987653        35688999999999 99999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcC-EEEEEe
Q psy8397          93 CVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVD-HLYVIA  171 (203)
Q Consensus        93 i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d-~v~vl~  171 (203)
                      +++.|+++.+   |||++||+++                                           .+..+|| ++++|+
T Consensus       167 l~~~L~~~~~---tviivtHd~~-------------------------------------------~~~~~~d~~i~~l~  200 (263)
T 2pjz_A          167 ISRYIKEYGK---EGILVTHELD-------------------------------------------MLNLYKEYKAYFLV  200 (263)
T ss_dssp             HHHHHHHSCS---EEEEEESCGG-------------------------------------------GGGGCTTSEEEEEE
T ss_pred             HHHHHHHhcC---cEEEEEcCHH-------------------------------------------HHHHhcCceEEEEE
Confidence            9999998753   8888888864                                           3567899 999999


Q ss_pred             CCeEEeeCCcccch
Q psy8397         172 EGHCVYKGSSANTI  185 (203)
Q Consensus       172 ~G~i~~~g~~~~~~  185 (203)
                      +|++++.|+++++.
T Consensus       201 ~G~i~~~g~~~~l~  214 (263)
T 2pjz_A          201 GNRLQGPISVSELL  214 (263)
T ss_dssp             TTEEEEEEEHHHHH
T ss_pred             CCEEEEecCHHHHH
Confidence            99999999988775

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=99.95  E-value=3.1e-27  Score=201.30  Aligned_cols=130  Identities=25%  Similarity=0.326  Sum_probs=105.8

Q ss_pred             eeEEEeeecccccCCCCHhHHHhH------HHHHHHHHHHcCCccccc-----------ccCCCCCHHHHHHHHHHHHHh
Q psy8397           8 TIWCWQIISAQYSHRISVDDILDT------IGLVDDILDTIGLVLSKH-----------TLCGRLSGGQKKRLSIALELI   70 (203)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~v~~~L~~~~L~~~~~-----------~~v~~LSgGqrqrl~iA~aL~   70 (203)
                      ..|.+|...  ++. .|+.|++..      .+++.++++.+++.+..+           +++.+|||||||||+|||||+
T Consensus        85 i~~v~Q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~  161 (247)
T 2ff7_A           85 VGVVLQDNV--LLN-RSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALV  161 (247)
T ss_dssp             EEEECSSCC--CTT-SBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHT
T ss_pred             EEEEeCCCc--ccc-ccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHh
Confidence            456666432  333 599887643      345777888888765544           456899999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEE
Q psy8397          71 DNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIV  150 (203)
Q Consensus        71 ~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi  150 (203)
                      .+|++|||||||+|||+.++..+++.|+++. +|+|||++||+++.                                  
T Consensus       162 ~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~g~tviivtH~~~~----------------------------------  206 (247)
T 2ff7_A          162 NNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLST----------------------------------  206 (247)
T ss_dssp             TCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGGG----------------------------------
T ss_pred             cCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHH----------------------------------
Confidence            9999999999999999999999999999995 58888888888642                                  


Q ss_pred             EeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         151 CTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       151 ~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                               + ..||++++|++|++++.|+++++.
T Consensus       207 ---------~-~~~d~v~~l~~G~i~~~g~~~~l~  231 (247)
T 2ff7_A          207 ---------V-KNADRIIVMEKGKIVEQGKHKELL  231 (247)
T ss_dssp             ---------G-TTSSEEEEEETTEEEEEECHHHHH
T ss_pred             ---------H-HhCCEEEEEECCEEEEECCHHHHH
Confidence                     3 359999999999999999988764

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=99.94  E-value=5.7e-27  Score=198.71  Aligned_cols=131  Identities=28%  Similarity=0.315  Sum_probs=107.5

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH-------HHHHHHHHHHcCCcccccc-----------cCCCCCHHHHHHHHHHHH
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT-------IGLVDDILDTIGLVLSKHT-----------LCGRLSGGQKKRLSIALE   68 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~v~~~L~~~~L~~~~~~-----------~v~~LSgGqrqrl~iA~a   68 (203)
                      ...|.+|..  .++. .|+.|++..       .+++.++++.+++.+..++           ++.+|||||||||+||||
T Consensus        77 ~i~~v~q~~--~l~~-~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAra  153 (243)
T 1mv5_A           77 QIGFVSQDS--AIMA-GTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARA  153 (243)
T ss_dssp             TCCEECCSS--CCCC-EEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHH
T ss_pred             hEEEEcCCC--cccc-ccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHH
Confidence            456677643  2333 488887532       3567888999988766544           467999999999999999


Q ss_pred             HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCce
Q psy8397          69 LIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRT  148 (203)
Q Consensus        69 L~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t  148 (203)
                      |+.+|++|||||||+|||+.++..+++.|+++. +|+|||++||+++                                 
T Consensus       154 l~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~---------------------------------  199 (243)
T 1mv5_A          154 FLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLS---------------------------------  199 (243)
T ss_dssp             HHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHH---------------------------------
T ss_pred             HhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCChH---------------------------------
Confidence            999999999999999999999999999999987 5888888888853                                 


Q ss_pred             EEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         149 IVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       149 vi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                                .+ ..||++++|++|++++.|+++++.
T Consensus       200 ----------~~-~~~d~v~~l~~G~i~~~g~~~~~~  225 (243)
T 1mv5_A          200 ----------TI-VDADKIYFIEKGQITGSGKHNELV  225 (243)
T ss_dssp             ----------HH-HHCSEEEEEETTEECCCSCHHHHH
T ss_pred             ----------HH-HhCCEEEEEECCEEEEeCCHHHHH
Confidence                      23 469999999999999999988775

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=99.94  E-value=5.1e-27  Score=202.58  Aligned_cols=131  Identities=21%  Similarity=0.252  Sum_probs=105.1

Q ss_pred             eeEEEeeecccccCCCCHhHHHhH--------H--------HHHHHHHHHc--CCcccccccCCCCCHHHHHHHHHHHHH
Q psy8397           8 TIWCWQIISAQYSHRISVDDILDT--------I--------GLVDDILDTI--GLVLSKHTLCGRLSGGQKKRLSIALEL   69 (203)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~--------~--------~~v~~~L~~~--~L~~~~~~~v~~LSgGqrqrl~iA~aL   69 (203)
                      ..|.+|..  .++. .||.|++..        .        ..+.++++.+  |+....++++.+|||||||||+|||||
T Consensus        95 i~~v~Q~~--~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL  171 (271)
T 2ixe_A           95 VAAVGQEP--LLFG-RSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARAL  171 (271)
T ss_dssp             EEEECSSC--CCCS-SBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHH
T ss_pred             EEEEecCC--cccc-ccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHH
Confidence            45666643  2333 588887532        0        1234567777  788888999999999999999999999


Q ss_pred             hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCce
Q psy8397          70 IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALAR-GGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRT  148 (203)
Q Consensus        70 ~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~-~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t  148 (203)
                      +.+|++|||||||+|||+.++..+++.|+++.+ +|+|||++||+++                                 
T Consensus       172 ~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~---------------------------------  218 (271)
T 2ixe_A          172 IRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLS---------------------------------  218 (271)
T ss_dssp             TTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHH---------------------------------
T ss_pred             hcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH---------------------------------
Confidence            999999999999999999999999999999864 3777777777753                                 


Q ss_pred             EEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         149 IVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       149 vi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                                .+. .||++++|++|++++.|+++++.
T Consensus       219 ----------~~~-~~d~v~~l~~G~i~~~g~~~~l~  244 (271)
T 2ixe_A          219 ----------LAE-RAHHILFLKEGSVCEQGTHLQLM  244 (271)
T ss_dssp             ----------HHT-TCSEEEEEETTEEEEEECHHHHH
T ss_pred             ----------HHH-hCCEEEEEECCEEEEECCHHHHH
Confidence                      244 59999999999999999988775

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=99.94  E-value=2.2e-26  Score=197.41  Aligned_cols=131  Identities=22%  Similarity=0.239  Sum_probs=105.6

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH------HHHHHHHHHHcCCccc-----------ccccCCCCCHHHHHHHHHHHHH
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT------IGLVDDILDTIGLVLS-----------KHTLCGRLSGGQKKRLSIALEL   69 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~v~~~L~~~~L~~~-----------~~~~v~~LSgGqrqrl~iA~aL   69 (203)
                      ...|.+|..  .++. .|+.|++..      .+++.++++.+++.+.           .++++.+|||||||||+|||||
T Consensus        94 ~i~~v~Q~~--~l~~-~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL  170 (260)
T 2ghi_A           94 IIGIVPQDT--ILFN-ETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCL  170 (260)
T ss_dssp             TEEEECSSC--CCCS-EEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHH
T ss_pred             cEEEEcCCC--cccc-cCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHH
Confidence            356667643  2333 588887642      3456777877776543           2467789999999999999999


Q ss_pred             hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceE
Q psy8397          70 IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTI  149 (203)
Q Consensus        70 ~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tv  149 (203)
                      +.+|++|||||||+|||+.++..+++.|+++.+ |+|||++||+++.                                 
T Consensus       171 ~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~-~~tviivtH~~~~---------------------------------  216 (260)
T 2ghi_A          171 LKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK-NRTLIIIAHRLST---------------------------------  216 (260)
T ss_dssp             HHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT-TSEEEEECSSGGG---------------------------------
T ss_pred             HcCCCEEEEECccccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHH---------------------------------
Confidence            999999999999999999999999999999864 7888888888642                                 


Q ss_pred             EEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         150 VCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       150 i~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                                + ..||++++|++|++++.|+++++.
T Consensus       217 ----------~-~~~d~i~~l~~G~i~~~g~~~~l~  241 (260)
T 2ghi_A          217 ----------I-SSAESIILLNKGKIVEKGTHKDLL  241 (260)
T ss_dssp             ----------S-TTCSEEEEEETTEEEEEECHHHHH
T ss_pred             ----------H-HhCCEEEEEECCEEEEECCHHHHH
Confidence                      3 359999999999999999988775

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=99.93  E-value=2.7e-26  Score=201.97  Aligned_cols=132  Identities=25%  Similarity=0.316  Sum_probs=104.2

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH------HHHHHHHHHHcCCcc-----------cccccCCCCCHHHHHHHHHHHHH
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT------IGLVDDILDTIGLVL-----------SKHTLCGRLSGGQKKRLSIALEL   69 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~v~~~L~~~~L~~-----------~~~~~v~~LSgGqrqrl~iA~aL   69 (203)
                      ...|.+|...  ++ ..|+.|++..      .+++.++++.+++.+           ..+.+..+|||||||||+|||||
T Consensus       129 ~i~~v~Q~~~--lf-~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL  205 (306)
T 3nh6_A          129 HIGVVPQDTV--LF-NDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTI  205 (306)
T ss_dssp             TEEEECSSCC--CC-SEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHH
T ss_pred             ceEEEecCCc--cC-cccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHH
Confidence            3567776532  33 4588887642      345566666665544           34555678999999999999999


Q ss_pred             hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceE
Q psy8397          70 IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTI  149 (203)
Q Consensus        70 ~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tv  149 (203)
                      +.+|++|||||||+|||+.+...+++.|+++.+ ++|+|++||+++                                  
T Consensus       206 ~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~----------------------------------  250 (306)
T 3nh6_A          206 LKAPGIILLDEATSALDTSNERAIQASLAKVCA-NRTTIVVAHRLS----------------------------------  250 (306)
T ss_dssp             HHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT-TSEEEEECCSHH----------------------------------
T ss_pred             HhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC-CCEEEEEEcChH----------------------------------
Confidence            999999999999999999999999999999863 677788887753                                  


Q ss_pred             EEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccchh
Q psy8397         150 VCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTIP  186 (203)
Q Consensus       150 i~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~~  186 (203)
                               .+.. ||+|++|++|+|++.|+++++..
T Consensus       251 ---------~~~~-aD~i~vl~~G~iv~~G~~~el~~  277 (306)
T 3nh6_A          251 ---------TVVN-ADQILVIKDGCIVERGRHEALLS  277 (306)
T ss_dssp             ---------HHHT-CSEEEEEETTEEEEEECHHHHHH
T ss_pred             ---------HHHc-CCEEEEEECCEEEEECCHHHHHh
Confidence                     2444 99999999999999999998763

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=99.93  E-value=1.3e-26  Score=210.09  Aligned_cols=131  Identities=21%  Similarity=0.178  Sum_probs=111.4

Q ss_pred             ceeEEEeeecccccCCCCHhHHHh-----HHHHHHHHHHHcCCcccccccCCC-----------CCHHHHHHHHHHHHHh
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILD-----TIGLVDDILDTIGLVLSKHTLCGR-----------LSGGQKKRLSIALELI   70 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~v~~~L~~~~L~~~~~~~v~~-----------LSgGqrqrl~iA~aL~   70 (203)
                      ...+.||...  +++ +||.|++.     .++++.++++.++|.+..++++.+           |||||||||+|||||+
T Consensus        95 ~ig~v~Q~~~--lf~-~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~  171 (390)
T 3gd7_A           95 AFGVIPQKVF--IFS-GTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVL  171 (390)
T ss_dssp             TEEEESCCCC--CCS-EEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHH
T ss_pred             CEEEEcCCcc--cCc-cCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHh
Confidence            4567776543  333 69988864     256788999999999999999988           9999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEE
Q psy8397          71 DNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIV  150 (203)
Q Consensus        71 ~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi  150 (203)
                      .+|++|||||||+|||+..+..+++.|+++. .|.|+|++||+++                                   
T Consensus       172 ~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~-~~~tvi~vtHd~e-----------------------------------  215 (390)
T 3gd7_A          172 SKAKILLLDEPSAHLDPVTYQIIRRTLKQAF-ADCTVILCEARIE-----------------------------------  215 (390)
T ss_dssp             TTCCEEEEESHHHHSCHHHHHHHHHHHHTTT-TTSCEEEECSSSG-----------------------------------
T ss_pred             cCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcCHH-----------------------------------
Confidence            9999999999999999999999999998764 4678888888753                                   


Q ss_pred             EeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         151 CTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       151 ~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                               ....||+|++|++|+++..|+++++.
T Consensus       216 ---------~~~~aDri~vl~~G~i~~~g~~~el~  241 (390)
T 3gd7_A          216 ---------AMLECDQFLVIEENKVRQYDSILELY  241 (390)
T ss_dssp             ---------GGTTCSEEEEEETTEEEEESSHHHHH
T ss_pred             ---------HHHhCCEEEEEECCEEEEECCHHHHH
Confidence                     23569999999999999999998875

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=99.93  E-value=4.1e-26  Score=193.10  Aligned_cols=129  Identities=20%  Similarity=0.248  Sum_probs=98.8

Q ss_pred             eEEEeeecccccCCCCHhHHHhH-----HHHHHHHHHHcCCc-----------ccccccCCCCCHHHHHHHHHHHHHhcC
Q psy8397           9 IWCWQIISAQYSHRISVDDILDT-----IGLVDDILDTIGLV-----------LSKHTLCGRLSGGQKKRLSIALELIDN   72 (203)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~L~~~~L~-----------~~~~~~v~~LSgGqrqrl~iA~aL~~~   72 (203)
                      .|.+|..  .+ ..+|+.|++..     .+...++++.+++.           ...++++.+||||||||++|||||+.+
T Consensus        69 ~~v~Q~~--~~-~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~  145 (237)
T 2cbz_A           69 AYVPQQA--WI-QNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSN  145 (237)
T ss_dssp             EEECSSC--CC-CSEEHHHHHHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHC
T ss_pred             EEEcCCC--cC-CCcCHHHHhhCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcC
Confidence            4556542  23 46788887643     12334444444432           135788999999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHH---HHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceE
Q psy8397          73 PPIMFLDEPTTGLDSNSTNQCVAMLK---ALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTI  149 (203)
Q Consensus        73 P~vLlLDEPt~gLD~~~~~~i~~~l~---~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tv  149 (203)
                      |++|||||||+|||+.++..+++.|.   ++. +|+|||++||+++.                                 
T Consensus       146 p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-~~~tviivtH~~~~---------------------------------  191 (237)
T 2cbz_A          146 ADIYLFDDPLSAVDAHVGKHIFENVIGPKGML-KNKTRILVTHSMSY---------------------------------  191 (237)
T ss_dssp             CSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT-TTSEEEEECSCSTT---------------------------------
T ss_pred             CCEEEEeCcccccCHHHHHHHHHHHHHHHhhc-CCCEEEEEecChHH---------------------------------
Confidence            99999999999999999999999985   333 47788888887642                                 


Q ss_pred             EEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         150 VCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       150 i~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                                + ..||++++|++|++++.|+++++.
T Consensus       192 ----------~-~~~d~v~~l~~G~i~~~g~~~~~~  216 (237)
T 2cbz_A          192 ----------L-PQVDVIIVMSGGKISEMGSYQELL  216 (237)
T ss_dssp             ----------G-GGSSEEEEEETTEEEEEECHHHHH
T ss_pred             ----------H-HhCCEEEEEeCCEEEEeCCHHHHh
Confidence                      3 469999999999999999988765

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=99.93  E-value=6.8e-26  Score=189.81  Aligned_cols=121  Identities=20%  Similarity=0.314  Sum_probs=101.8

Q ss_pred             eeEEEeeecccccCCCCHhHHHhH----------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEE
Q psy8397           8 TIWCWQIISAQYSHRISVDDILDT----------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMF   77 (203)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~----------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLl   77 (203)
                      ..|.+|..  .++..+|+.|++..          .+++.++++.+|+.+. ++++.+||||||||++||+||+.+|++||
T Consensus        80 i~~v~q~~--~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~-~~~~~~LSgGqkqrv~laraL~~~p~lll  156 (214)
T 1sgw_A           80 IFFLPEEI--IVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDL-KKKLGELSQGTIRRVQLASTLLVNAEIYV  156 (214)
T ss_dssp             EEEECSSC--CCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCT-TSBGGGSCHHHHHHHHHHHHTTSCCSEEE
T ss_pred             EEEEeCCC--cCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcC-CCChhhCCHHHHHHHHHHHHHHhCCCEEE
Confidence            45666543  34567899997643          2467889999999988 99999999999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCch
Q psy8397          78 LDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNST  132 (203)
Q Consensus        78 LDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~  132 (203)
                      |||||+|||+.++..+++.|+++.++|+|||++||++++ +...|+++.+.++..
T Consensus       157 LDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~-~~~~~d~v~~~~~~~  210 (214)
T 1sgw_A          157 LDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELS-YCDVNENLHKYSTKI  210 (214)
T ss_dssp             EESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCT-TSSEEEEGGGGBC--
T ss_pred             EECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHHhCCEEEEeCCcc
Confidence            999999999999999999999998779999999999875 567788876654443

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=99.92  E-value=2.4e-25  Score=187.30  Aligned_cols=129  Identities=17%  Similarity=0.212  Sum_probs=96.8

Q ss_pred             eEEEeeecccccCCCCHhHHHhH-----HHHHHHHHHHcCCcccc-----------cccCCCCCHHHHHHHHHHHHHhcC
Q psy8397           9 IWCWQIISAQYSHRISVDDILDT-----IGLVDDILDTIGLVLSK-----------HTLCGRLSGGQKKRLSIALELIDN   72 (203)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~L~~~~L~~~~-----------~~~v~~LSgGqrqrl~iA~aL~~~   72 (203)
                      .|.+|..  .++. .|+.|++..     ..++.++++.+++.+..           ++++.+||||||||++|||||+.+
T Consensus        72 ~~v~q~~--~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~  148 (229)
T 2pze_A           72 SFCSQFS--WIMP-GTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKD  148 (229)
T ss_dssp             EEECSSC--CCCS-BCHHHHHHTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSC
T ss_pred             EEEecCC--cccC-CCHHHHhhccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcC
Confidence            3555532  2334 499887643     12345566666654332           334689999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEE
Q psy8397          73 PPIMFLDEPTTGLDSNSTNQCVAM-LKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVC  151 (203)
Q Consensus        73 P~vLlLDEPt~gLD~~~~~~i~~~-l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~  151 (203)
                      |++|||||||+|||+.++..+++. ++++. +|+|||++||+++                                    
T Consensus       149 p~lllLDEPts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~------------------------------------  191 (229)
T 2pze_A          149 ADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKME------------------------------------  191 (229)
T ss_dssp             CSEEEEESTTTTSCHHHHHHHHHHCCCCCT-TTSEEEEECCCHH------------------------------------
T ss_pred             CCEEEEECcccCCCHHHHHHHHHHHHHHhh-CCCEEEEEcCChH------------------------------------
Confidence            999999999999999999999996 45554 3667777777742                                    


Q ss_pred             eecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         152 TIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       152 ~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                             .+ ..||++++|++|++++.|+++++.
T Consensus       192 -------~~-~~~d~v~~l~~G~i~~~g~~~~~~  217 (229)
T 2pze_A          192 -------HL-KKADKILILHEGSSYFYGTFSELQ  217 (229)
T ss_dssp             -------HH-HHCSEEEEEETTEEEEEECHHHHH
T ss_pred             -------HH-HhCCEEEEEECCEEEEECCHHHHH
Confidence                   23 459999999999999999988764

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.92  E-value=3.1e-25  Score=210.83  Aligned_cols=141  Identities=18%  Similarity=0.223  Sum_probs=114.8

Q ss_pred             eeEEEeeecccccCCCCHhHHHhH--------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy8397           8 TIWCWQIISAQYSHRISVDDILDT--------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLD   79 (203)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~--------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLD   79 (203)
                      ..+.+|....  ....|+.+++..        ...+.++++.++|.+..++++.+|||||||||+|||||+++|++||||
T Consensus       415 i~~~~q~~~~--~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLD  492 (608)
T 3j16_B          415 VSMKPQKIAP--KFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLID  492 (608)
T ss_dssp             EEEECSSCCC--CCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEEC
T ss_pred             EEEecccccc--cCCccHHHHHHHHhhcccccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence            4555554332  234577765431        345778999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchh
Q psy8397          80 EPTTGLDSNSTNQCVAMLKALAR-GGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSA  158 (203)
Q Consensus        80 EPt~gLD~~~~~~i~~~l~~l~~-~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~  158 (203)
                      |||+|||+.++..+++.|+++.+ .|.|||++|||++                                           
T Consensus       493 EPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~-------------------------------------------  529 (608)
T 3j16_B          493 EPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFI-------------------------------------------  529 (608)
T ss_dssp             CTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-------------------------------------------
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-------------------------------------------
Confidence            99999999999999999999864 4777777777753                                           


Q ss_pred             HHHhhcCEEEEEeC--CeEEeeCCcccchh----HHHhcCC
Q psy8397         159 TIFEMVDHLYVIAE--GHCVYKGSSANTIP----YLQTIGL  193 (203)
Q Consensus       159 ~i~~~~d~v~vl~~--G~i~~~g~~~~~~~----~~~~~g~  193 (203)
                      ++..+|||+++|++  |++++.|+|++++.    ++..++.
T Consensus       530 ~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~~~~~~~~~~~  570 (608)
T 3j16_B          530 MATYLADKVIVFEGIPSKNAHARAPESLLTGCNRFLKNLNV  570 (608)
T ss_dssp             HHHHHCSEEEECEEETTTEEECCCCEEHHHHHHHHHHHHTC
T ss_pred             HHHHhCCEEEEEeCCCCeEEecCChHHHhhhhhHHHHhcCc
Confidence            47789999999996  89999999999874    3455553

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.92  E-value=3.5e-25  Score=207.43  Aligned_cols=134  Identities=22%  Similarity=0.245  Sum_probs=111.8

Q ss_pred             eeEEEeeecccccCCCCHhHHHhH--------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy8397           8 TIWCWQIISAQYSHRISVDDILDT--------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLD   79 (203)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~--------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLD   79 (203)
                      ..|.+|...  ....+||.++...        .+++.++++.+++.+..++++.+|||||||||+|||+|+.+|++||||
T Consensus       349 i~~v~Q~~~--~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLD  426 (538)
T 1yqt_A          349 VAYKPQYIK--ADYEGTVYELLSKIDASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLD  426 (538)
T ss_dssp             EEEECSSCC--CCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEE
T ss_pred             EEEEecCCc--CCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEe
Confidence            445665433  2356788876542        235678899999999999999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchh
Q psy8397          80 EPTTGLDSNSTNQCVAMLKALAR-GGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSA  158 (203)
Q Consensus        80 EPt~gLD~~~~~~i~~~l~~l~~-~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~  158 (203)
                      |||+|||+.++..+++.|+++.+ .|.|||++|||++                                           
T Consensus       427 EPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~-------------------------------------------  463 (538)
T 1yqt_A          427 EPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-------------------------------------------  463 (538)
T ss_dssp             CTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-------------------------------------------
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-------------------------------------------
Confidence            99999999999999999999874 4777777777753                                           


Q ss_pred             HHHhhcCEEEEEeC--CeEEeeCCcccchh
Q psy8397         159 TIFEMVDHLYVIAE--GHCVYKGSSANTIP  186 (203)
Q Consensus       159 ~i~~~~d~v~vl~~--G~i~~~g~~~~~~~  186 (203)
                      ++..+||++++|++  |++++.|+|+++..
T Consensus       464 ~~~~~~drv~vl~~~~~~~~~~g~~~~~~~  493 (538)
T 1yqt_A          464 MIDYVSDRLMVFEGEPGKYGRALPPMGMRE  493 (538)
T ss_dssp             HHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred             HHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence            47789999999986  78888999998765

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=99.92  E-value=9.3e-25  Score=205.35  Aligned_cols=131  Identities=25%  Similarity=0.370  Sum_probs=106.3

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH-------HHHHHHHHHHcCCcccccc-----------cCCCCCHHHHHHHHHHHH
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT-------IGLVDDILDTIGLVLSKHT-----------LCGRLSGGQKKRLSIALE   68 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~v~~~L~~~~L~~~~~~-----------~v~~LSgGqrqrl~iA~a   68 (203)
                      ...+.+|...  +++ .|+.|++..       .+++.++++.+++.+..++           +..+||||||||++||||
T Consensus       418 ~i~~v~Q~~~--l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAra  494 (582)
T 3b5x_A          418 HFALVSQNVH--LFN-DTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARA  494 (582)
T ss_pred             CeEEEcCCCc--ccc-ccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHH
Confidence            4566776432  333 488887642       3567788888887655444           457899999999999999


Q ss_pred             HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCce
Q psy8397          69 LIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRT  148 (203)
Q Consensus        69 L~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t  148 (203)
                      |+.+|++|+|||||+|||+.+.+.+.+.|+++.+ |+|+|++||+++                                 
T Consensus       495 l~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~---------------------------------  540 (582)
T 3b5x_A          495 LLRDAPVLILDEATSALDTESERAIQAALDELQK-NKTVLVIAHRLS---------------------------------  540 (582)
T ss_pred             HHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC-CCEEEEEecCHH---------------------------------
Confidence            9999999999999999999999999999999864 788888888864                                 


Q ss_pred             EEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         149 IVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       149 vi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                                .+ ..||++++|++|++++.|+++++.
T Consensus       541 ----------~~-~~~d~i~~l~~G~i~~~g~~~~l~  566 (582)
T 3b5x_A          541 ----------TI-EQADEILVVDEGEIIERGRHADLL  566 (582)
T ss_pred             ----------HH-HhCCEEEEEECCEEEEECCHHHHH
Confidence                      23 469999999999999999998875

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.92  E-value=2.1e-24  Score=204.95  Aligned_cols=134  Identities=22%  Similarity=0.236  Sum_probs=112.4

Q ss_pred             eeEEEeeecccccCCCCHhHHHhH--------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy8397           8 TIWCWQIISAQYSHRISVDDILDT--------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLD   79 (203)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~--------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLD   79 (203)
                      ..|.+|...  ....+||.++...        .+++.++++.+|+.+..++++++|||||||||+||+||+.+|++||||
T Consensus       419 i~~v~Q~~~--~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLD  496 (607)
T 3bk7_A          419 VAYKPQYIK--AEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLD  496 (607)
T ss_dssp             EEEECSSCC--CCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEE
T ss_pred             EEEEecCcc--CCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEe
Confidence            446666433  2356889886532        235778999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchh
Q psy8397          80 EPTTGLDSNSTNQCVAMLKALAR-GGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSA  158 (203)
Q Consensus        80 EPt~gLD~~~~~~i~~~l~~l~~-~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~  158 (203)
                      |||+|||+.++..+++.|+++.+ .|.|||++|||++                                           
T Consensus       497 EPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-------------------------------------------  533 (607)
T 3bk7_A          497 EPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-------------------------------------------  533 (607)
T ss_dssp             CTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-------------------------------------------
T ss_pred             CCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-------------------------------------------
Confidence            99999999999999999999874 4777777777753                                           


Q ss_pred             HHHhhcCEEEEEeC--CeEEeeCCcccchh
Q psy8397         159 TIFEMVDHLYVIAE--GHCVYKGSSANTIP  186 (203)
Q Consensus       159 ~i~~~~d~v~vl~~--G~i~~~g~~~~~~~  186 (203)
                      .+..+||++++|++  |++.+.|+|+++..
T Consensus       534 ~~~~~adrv~vl~~~~g~~~~~g~p~~~~~  563 (607)
T 3bk7_A          534 MIDYVSDRLIVFEGEPGRHGRALPPMGMRE  563 (607)
T ss_dssp             HHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred             HHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence            46789999999986  88888999998864

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=99.92  E-value=1e-24  Score=205.05  Aligned_cols=131  Identities=26%  Similarity=0.348  Sum_probs=106.4

Q ss_pred             eeEEEeeecccccCCCCHhHHHhH-------HHHHHHHHHHcCCccccc-----------ccCCCCCHHHHHHHHHHHHH
Q psy8397           8 TIWCWQIISAQYSHRISVDDILDT-------IGLVDDILDTIGLVLSKH-----------TLCGRLSGGQKKRLSIALEL   69 (203)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~-------~~~v~~~L~~~~L~~~~~-----------~~v~~LSgGqrqrl~iA~aL   69 (203)
                      ..+.+|..  .+++ .|+.|++..       .+++.++++.+++.+..+           .+..+||||||||++|||||
T Consensus       419 i~~v~Q~~--~l~~-~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral  495 (582)
T 3b60_A          419 VALVSQNV--HLFN-DTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARAL  495 (582)
T ss_dssp             EEEECSSC--CCCS-SBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHH
T ss_pred             CeEEccCC--cCCC-CCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHH
Confidence            55667643  2334 489887642       356778888887765443           35578999999999999999


Q ss_pred             hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceE
Q psy8397          70 IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTI  149 (203)
Q Consensus        70 ~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tv  149 (203)
                      +.+|++|+|||||+|||+.+.+.+.+.++++.+ |+|+|++||+++.                                 
T Consensus       496 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~---------------------------------  541 (582)
T 3b60_A          496 LRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLST---------------------------------  541 (582)
T ss_dssp             HHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGGG---------------------------------
T ss_pred             HhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEeccHHH---------------------------------
Confidence            999999999999999999999999999999864 7888888888642                                 


Q ss_pred             EEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccchh
Q psy8397         150 VCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTIP  186 (203)
Q Consensus       150 i~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~~  186 (203)
                                + ..||++++|++|++++.|+++++..
T Consensus       542 ----------~-~~~d~i~~l~~G~i~~~g~~~~l~~  567 (582)
T 3b60_A          542 ----------I-EQADEIVVVEDGIIVERGTHSELLA  567 (582)
T ss_dssp             ----------T-TTCSEEEEEETTEEEEEECHHHHHH
T ss_pred             ----------H-HhCCEEEEEECCEEEEecCHHHHHH
Confidence                      3 4699999999999999999988753

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=99.91  E-value=2.4e-24  Score=205.37  Aligned_cols=120  Identities=28%  Similarity=0.419  Sum_probs=101.8

Q ss_pred             CCCHhHHHhH------HHHHHHHHHHcCCcc-cccccCCCCCHHHHHHHHHHHHHhcCC---CEEEEeCCCCCCCHHHHH
Q psy8397          22 RISVDDILDT------IGLVDDILDTIGLVL-SKHTLCGRLSGGQKKRLSIALELIDNP---PIMFLDEPTTGLDSNSTN   91 (203)
Q Consensus        22 ~~~~~~~~~~------~~~v~~~L~~~~L~~-~~~~~v~~LSgGqrqrl~iA~aL~~~P---~vLlLDEPt~gLD~~~~~   91 (203)
                      .+|+.|++..      .+++.+.++.+++.. ..++++.+|||||||||+|||||+++|   ++|||||||+|||+.++.
T Consensus       504 ~ltv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~  583 (670)
T 3ux8_A          504 DMTVEDALDFFASIPKIKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIA  583 (670)
T ss_dssp             TSBHHHHHHHTTTCHHHHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHH
T ss_pred             hCCHHHHHHHHHHhhhHHHHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHH
Confidence            3677776542      345677888999964 568999999999999999999999987   499999999999999999


Q ss_pred             HHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEE-
Q psy8397          92 QCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVI-  170 (203)
Q Consensus        92 ~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl-  170 (203)
                      .+++.|++++++|.|||++||+++                                           .+ ..||++++| 
T Consensus       584 ~i~~~l~~l~~~g~tvi~vtHd~~-------------------------------------------~~-~~~d~i~~l~  619 (670)
T 3ux8_A          584 RLLDVLHRLVDNGDTVLVIEHNLD-------------------------------------------VI-KTADYIIDLG  619 (670)
T ss_dssp             HHHHHHHHHHHTTCEEEEECCCHH-------------------------------------------HH-TTCSEEEEEE
T ss_pred             HHHHHHHHHHHCCCEEEEEeCCHH-------------------------------------------HH-HhCCEEEEec
Confidence            999999999877777777777753                                           23 569999999 


Q ss_pred             -----eCCeEEeeCCcccch
Q psy8397         171 -----AEGHCVYKGSSANTI  185 (203)
Q Consensus       171 -----~~G~i~~~g~~~~~~  185 (203)
                           ++|++++.|+++++.
T Consensus       620 ~~~g~~~G~i~~~g~~~~~~  639 (670)
T 3ux8_A          620 PEGGDRGGQIVAVGTPEEVA  639 (670)
T ss_dssp             SSSGGGCCEEEEEECHHHHH
T ss_pred             CCcCCCCCEEEEecCHHHHH
Confidence                 899999999998874

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=99.91  E-value=2.8e-24  Score=202.08  Aligned_cols=132  Identities=30%  Similarity=0.295  Sum_probs=104.2

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH------HHHHHHHHHHcCCccc-----------ccccCCCCCHHHHHHHHHHHHH
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT------IGLVDDILDTIGLVLS-----------KHTLCGRLSGGQKKRLSIALEL   69 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~v~~~L~~~~L~~~-----------~~~~v~~LSgGqrqrl~iA~aL   69 (203)
                      ...+++|..  .+++ .|+.|++..      .+++.+.++..++.+.           .+.+..+||||||||++|||||
T Consensus       416 ~i~~v~Q~~--~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral  492 (578)
T 4a82_A          416 QIGLVQQDN--ILFS-DTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIF  492 (578)
T ss_dssp             TEEEECSSC--CCCS-SBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHH
T ss_pred             heEEEeCCC--ccCc-ccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHH
Confidence            356777643  3333 499988642      3456667776665443           2344568999999999999999


Q ss_pred             hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceE
Q psy8397          70 IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTI  149 (203)
Q Consensus        70 ~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tv  149 (203)
                      +.+|++|+|||||+|||+.+.+.+.+.++++. +|+|+|++||+++.                                 
T Consensus       493 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~---------------------------------  538 (578)
T 4a82_A          493 LNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLST---------------------------------  538 (578)
T ss_dssp             HHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGGG---------------------------------
T ss_pred             HcCCCEEEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH---------------------------------
Confidence            99999999999999999999999999999875 46788888888642                                 


Q ss_pred             EEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccchh
Q psy8397         150 VCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTIP  186 (203)
Q Consensus       150 i~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~~  186 (203)
                                + ..||++++|++|++++.|+++++..
T Consensus       539 ----------~-~~~d~i~~l~~G~i~~~g~~~el~~  564 (578)
T 4a82_A          539 ----------I-THADKIVVIENGHIVETGTHRELIA  564 (578)
T ss_dssp             ----------T-TTCSEEEEEETTEEEEEECHHHHHH
T ss_pred             ----------H-HcCCEEEEEECCEEEEECCHHHHHh
Confidence                      3 4599999999999999999998763

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.91  E-value=4.2e-24  Score=201.48  Aligned_cols=131  Identities=22%  Similarity=0.228  Sum_probs=102.7

Q ss_pred             eeEEEeeecccccCCCCHhHHHhH------HHHHHHHHHHc-----------CCcccccccCCCCCHHHHHHHHHHHHHh
Q psy8397           8 TIWCWQIISAQYSHRISVDDILDT------IGLVDDILDTI-----------GLVLSKHTLCGRLSGGQKKRLSIALELI   70 (203)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~v~~~L~~~-----------~L~~~~~~~v~~LSgGqrqrl~iA~aL~   70 (203)
                      ..+.+|..  .+++ .|+.|++..      .+++.+.++..           |+....+++..+||||||||++|||||+
T Consensus       419 i~~v~Q~~--~lf~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~  495 (587)
T 3qf4_A          419 ISAVPQET--VLFS-GTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALV  495 (587)
T ss_dssp             EEEECSSC--CCCS-EEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHH
T ss_pred             eEEECCCC--cCcC-ccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHH
Confidence            45666643  2333 488887632      23444444444           3444556778899999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEE
Q psy8397          71 DNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIV  150 (203)
Q Consensus        71 ~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi  150 (203)
                      .+|++|+|||||++||+.+.+.+.+.++++. +|+|+|++||+++                                   
T Consensus       496 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~-----------------------------------  539 (587)
T 3qf4_A          496 KKPKVLILDDCTSSVDPITEKRILDGLKRYT-KGCTTFIITQKIP-----------------------------------  539 (587)
T ss_dssp             TCCSEEEEESCCTTSCHHHHHHHHHHHHHHS-TTCEEEEEESCHH-----------------------------------
T ss_pred             cCCCEEEEECCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecChH-----------------------------------
Confidence            9999999999999999999999999999874 4788888888753                                   


Q ss_pred             EeecCchhHHHhhcCEEEEEeCCeEEeeCCcccchh
Q psy8397         151 CTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTIP  186 (203)
Q Consensus       151 ~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~~  186 (203)
                              . ...||+|++|++|++++.|+++++..
T Consensus       540 --------~-~~~~d~i~vl~~G~i~~~g~~~el~~  566 (587)
T 3qf4_A          540 --------T-ALLADKILVLHEGKVAGFGTHKELLE  566 (587)
T ss_dssp             --------H-HTTSSEEEEEETTEEEEEECHHHHHH
T ss_pred             --------H-HHhCCEEEEEECCEEEEECCHHHHHh
Confidence                    2 35799999999999999999998863

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.91  E-value=2.2e-24  Score=203.73  Aligned_cols=132  Identities=23%  Similarity=0.255  Sum_probs=105.1

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH------HHHHHHHHHHcCCcccccccC-----------CCCCHHHHHHHHHHHHH
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT------IGLVDDILDTIGLVLSKHTLC-----------GRLSGGQKKRLSIALEL   69 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~v~~~L~~~~L~~~~~~~v-----------~~LSgGqrqrl~iA~aL   69 (203)
                      ...+.+|..  .++ ..|+.|++..      .+++.++++.+++.+..+..+           .+||||||||++|||||
T Consensus       430 ~i~~v~Q~~--~lf-~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral  506 (598)
T 3qf4_B          430 SIGIVLQDT--ILF-STTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAF  506 (598)
T ss_dssp             HEEEECTTC--CCC-SSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHH
T ss_pred             ceEEEeCCC--ccc-cccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHH
Confidence            355666643  233 3589887642      345666776666655444443           68999999999999999


Q ss_pred             hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceE
Q psy8397          70 IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTI  149 (203)
Q Consensus        70 ~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tv  149 (203)
                      +.+|++|+|||||++||+.+...+.+.++++. +|+|+|++||+++.                                 
T Consensus       507 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~---------------------------------  552 (598)
T 3qf4_B          507 LANPKILILDEATSNVDTKTEKSIQAAMWKLM-EGKTSIIIAHRLNT---------------------------------  552 (598)
T ss_dssp             HTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH-TTSEEEEESCCTTH---------------------------------
T ss_pred             hcCCCEEEEECCccCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH---------------------------------
Confidence            99999999999999999999999999999985 58888888888752                                 


Q ss_pred             EEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccchh
Q psy8397         150 VCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTIP  186 (203)
Q Consensus       150 i~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~~  186 (203)
                                + ..||+|++|++|++++.|+++++..
T Consensus       553 ----------~-~~~d~i~~l~~G~i~~~g~~~~l~~  578 (598)
T 3qf4_B          553 ----------I-KNADLIIVLRDGEIVEMGKHDELIQ  578 (598)
T ss_dssp             ----------H-HHCSEEEEECSSSEEECSCHHHHHH
T ss_pred             ----------H-HcCCEEEEEECCEEEEECCHHHHHh
Confidence                      3 4599999999999999999998763

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=99.90  E-value=4.5e-24  Score=203.47  Aligned_cols=104  Identities=28%  Similarity=0.461  Sum_probs=92.9

Q ss_pred             HHHHcCCccc-ccccCCCCCHHHHHHHHHHHHHhcCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCC
Q psy8397          38 ILDTIGLVLS-KHTLCGRLSGGQKKRLSIALELIDNPP--IMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQP  114 (203)
Q Consensus        38 ~L~~~~L~~~-~~~~v~~LSgGqrqrl~iA~aL~~~P~--vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~  114 (203)
                      +++.+||.+. .++++++|||||||||+|||||+++|+  +|||||||+|||+.++..+++.|++++++|.|||++||++
T Consensus       185 ~l~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~  264 (670)
T 3ux8_A          185 FLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDE  264 (670)
T ss_dssp             HHHHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCH
T ss_pred             HHHHcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            5888999865 699999999999999999999999998  9999999999999999999999999987777888888775


Q ss_pred             CchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEE------eCCeEEeeCCcccch
Q psy8397         115 SATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVI------AEGHCVYKGSSANTI  185 (203)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl------~~G~i~~~g~~~~~~  185 (203)
                      +                                           . ...||++++|      ++|++++.|+++++.
T Consensus       265 ~-------------------------------------------~-~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~  297 (670)
T 3ux8_A          265 D-------------------------------------------T-MLAADYLIDIGPGAGIHGGEVVAAGTPEEVM  297 (670)
T ss_dssp             H-------------------------------------------H-HHHCSEEEEECSSSGGGCCSEEEEECHHHHH
T ss_pred             H-------------------------------------------H-HhhCCEEEEecccccccCCEEEEecCHHHHh
Confidence            3                                           2 3469999999      899999999998764

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=99.90  E-value=4.8e-24  Score=186.02  Aligned_cols=130  Identities=17%  Similarity=0.194  Sum_probs=95.8

Q ss_pred             eeEEEeeecccccCCCCHhHHHhH----HHHHHHHHHHcCCcccc-----------cccCCCCCHHHHHHHHHHHHHhcC
Q psy8397           8 TIWCWQIISAQYSHRISVDDILDT----IGLVDDILDTIGLVLSK-----------HTLCGRLSGGQKKRLSIALELIDN   72 (203)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~L~~~~L~~~~-----------~~~v~~LSgGqrqrl~iA~aL~~~   72 (203)
                      ..|.+|..  .++. .|+.|++..    ..++.++++.+++.+..           +.++.+||||||||++|||||+.+
T Consensus       101 i~~v~Q~~--~l~~-~tv~enl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~  177 (290)
T 2bbs_A          101 ISFCSQNS--WIMP-GTIKENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKD  177 (290)
T ss_dssp             EEEECSSC--CCCS-SBHHHHHHTTCCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSC
T ss_pred             EEEEeCCC--ccCc-ccHHHHhhCcccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCC
Confidence            34556543  2334 499887641    12345566666664332           234579999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHH-HHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEE
Q psy8397          73 PPIMFLDEPTTGLDSNSTNQCVAML-KALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVC  151 (203)
Q Consensus        73 P~vLlLDEPt~gLD~~~~~~i~~~l-~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~  151 (203)
                      |++|||||||+|||+.++..+++.+ +++. +|+|||++||+++                                    
T Consensus       178 p~lllLDEPts~LD~~~~~~i~~~ll~~~~-~~~tviivtHd~~------------------------------------  220 (290)
T 2bbs_A          178 ADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKME------------------------------------  220 (290)
T ss_dssp             CSEEEEESTTTTCCHHHHHHHHHHCCCCCT-TTSEEEEECCCHH------------------------------------
T ss_pred             CCEEEEECCcccCCHHHHHHHHHHHHHHhh-CCCEEEEEecCHH------------------------------------
Confidence            9999999999999999999999864 4543 3677777777742                                    


Q ss_pred             eecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         152 TIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       152 ~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                             .+ ..||++++|++|++++.|+++++.
T Consensus       221 -------~~-~~~d~i~~l~~G~i~~~g~~~~l~  246 (290)
T 2bbs_A          221 -------HL-KKADKILILHEGSSYFYGTFSELQ  246 (290)
T ss_dssp             -------HH-HHSSEEEEEETTEEEEEECHHHHH
T ss_pred             -------HH-HcCCEEEEEECCeEEEeCCHHHHh
Confidence                   23 469999999999999999998874

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.90  E-value=7.9e-24  Score=198.48  Aligned_cols=122  Identities=19%  Similarity=0.208  Sum_probs=103.2

Q ss_pred             CCCCHhHHHhH---------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHH
Q psy8397          21 HRISVDDILDT---------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTN   91 (203)
Q Consensus        21 ~~~~~~~~~~~---------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~   91 (203)
                      ...||.+++..         ...++++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||+|||+.++.
T Consensus       343 ~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~  422 (538)
T 3ozx_A          343 YDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERY  422 (538)
T ss_dssp             CSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHH
T ss_pred             cCCCHHHHHHHhhhhccchhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHH
Confidence            35788876543         234678899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHh-CCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEE
Q psy8397          92 QCVAMLKALAR-GGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVI  170 (203)
Q Consensus        92 ~i~~~l~~l~~-~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl  170 (203)
                      .+++.|+++++ .|.|||++|||++                                           .+..+||||++|
T Consensus       423 ~i~~~l~~l~~~~g~tvi~vsHdl~-------------------------------------------~~~~~aDri~vl  459 (538)
T 3ozx_A          423 IVAKAIKRVTRERKAVTFIIDHDLS-------------------------------------------IHDYIADRIIVF  459 (538)
T ss_dssp             HHHHHHHHHHHHTTCEEEEECSCHH-------------------------------------------HHHHHCSEEEEE
T ss_pred             HHHHHHHHHHHhCCCEEEEEeCCHH-------------------------------------------HHHHhCCEEEEE
Confidence            99999999975 4777777777753                                           477899999999


Q ss_pred             eC--CeEEeeCCcccch
Q psy8397         171 AE--GHCVYKGSSANTI  185 (203)
Q Consensus       171 ~~--G~i~~~g~~~~~~  185 (203)
                      ++  |.+...+++..+.
T Consensus       460 ~~~~~~~~~~~~~~~~~  476 (538)
T 3ozx_A          460 KGEPEKAGLATSPVTLK  476 (538)
T ss_dssp             EEETTTEEEECCCEEHH
T ss_pred             eCCcceeccCCChHHHH
Confidence            86  5666777776654

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.90  E-value=9.2e-24  Score=197.78  Aligned_cols=92  Identities=24%  Similarity=0.443  Sum_probs=82.1

Q ss_pred             CHhHHHhH---HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy8397          24 SVDDILDT---IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKAL  100 (203)
Q Consensus        24 ~~~~~~~~---~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l  100 (203)
                      ++.+++..   .+++.++++.+||....++++.+|||||||||+||+||+.+|++|||||||++||+.++..+++.|+++
T Consensus       125 ~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l  204 (538)
T 1yqt_A          125 KVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRL  204 (538)
T ss_dssp             BHHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred             cHHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence            67665432   246889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCCeEEEEecCCC
Q psy8397         101 ARGGRTIVCTIHQPS  115 (203)
Q Consensus       101 ~~~g~tvi~~tH~~~  115 (203)
                      .++|.|||++||+++
T Consensus       205 ~~~g~tvi~vsHd~~  219 (538)
T 1yqt_A          205 SEEGKSVLVVEHDLA  219 (538)
T ss_dssp             HHTTCEEEEECSCHH
T ss_pred             HhcCCEEEEEeCCHH
Confidence            877888888888753

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.89  E-value=1.6e-23  Score=198.86  Aligned_cols=92  Identities=24%  Similarity=0.456  Sum_probs=82.6

Q ss_pred             CHhHHHhH---HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy8397          24 SVDDILDT---IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKAL  100 (203)
Q Consensus        24 ~~~~~~~~---~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l  100 (203)
                      ++.|++..   .++++++++.+||.+..++++.+|||||||||+||+||+.+|++|||||||+|||+.++..+++.|+++
T Consensus       195 tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l  274 (607)
T 3bk7_A          195 KVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRL  274 (607)
T ss_dssp             BHHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHH
T ss_pred             cHHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence            77776532   246889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCCeEEEEecCCC
Q psy8397         101 ARGGRTIVCTIHQPS  115 (203)
Q Consensus       101 ~~~g~tvi~~tH~~~  115 (203)
                      .++|.|||++||+++
T Consensus       275 ~~~g~tvIivsHdl~  289 (607)
T 3bk7_A          275 ANEGKAVLVVEHDLA  289 (607)
T ss_dssp             HHTTCEEEEECSCHH
T ss_pred             HhcCCEEEEEecChH
Confidence            877788888888753

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.89  E-value=1.7e-23  Score=198.79  Aligned_cols=102  Identities=21%  Similarity=0.355  Sum_probs=92.7

Q ss_pred             HHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEec
Q psy8397          33 GLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH  112 (203)
Q Consensus        33 ~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH  112 (203)
                      +++.++++.+||....++++.+|||||||||+||+||+.+|++|||||||+|||+.++..+++.|++++++|.|||++||
T Consensus       200 ~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtH  279 (608)
T 3j16_B          200 EDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEH  279 (608)
T ss_dssp             HHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECS
T ss_pred             HHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence            67899999999999999999999999999999999999999999999999999999999999999999877888888888


Q ss_pred             CCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEe
Q psy8397         113 QPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVY  177 (203)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~  177 (203)
                      +++                                           .+..+||++++|++|..++
T Consensus       280 dl~-------------------------------------------~~~~~~drv~vl~~~~~~~  301 (608)
T 3j16_B          280 DLS-------------------------------------------VLDYLSDFVCIIYGVPSVY  301 (608)
T ss_dssp             CHH-------------------------------------------HHHHHCSEEEEEESCTTTE
T ss_pred             CHH-------------------------------------------HHHHhCCEEEEEeCCcccc
Confidence            764                                           4678899999998776443

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=99.89  E-value=4.5e-23  Score=203.52  Aligned_cols=119  Identities=29%  Similarity=0.444  Sum_probs=101.8

Q ss_pred             CCHhHHHhH------HHHHHHHHHHcCCcc-cccccCCCCCHHHHHHHHHHHHHhcCC---CEEEEeCCCCCCCHHHHHH
Q psy8397          23 ISVDDILDT------IGLVDDILDTIGLVL-SKHTLCGRLSGGQKKRLSIALELIDNP---PIMFLDEPTTGLDSNSTNQ   92 (203)
Q Consensus        23 ~~~~~~~~~------~~~v~~~L~~~~L~~-~~~~~v~~LSgGqrqrl~iA~aL~~~P---~vLlLDEPt~gLD~~~~~~   92 (203)
                      +|+.+.+..      ..++.++|+.+||.. ..++++.+|||||||||+|||+|+.+|   ++|||||||+|||+.+++.
T Consensus       767 ~tv~eal~f~~~~~~~~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~  846 (916)
T 3pih_A          767 MTVDEALEFFKNIPSIKRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRK  846 (916)
T ss_dssp             SBHHHHHHHTTTCHHHHHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHH
T ss_pred             CCHHHHHHHHhcchhHHHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHH
Confidence            566665432      356778999999975 468999999999999999999999876   7999999999999999999


Q ss_pred             HHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEE--
Q psy8397          93 CVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVI--  170 (203)
Q Consensus        93 i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl--  170 (203)
                      +++.|++++++|.|||++||+++                                           .+ ..||+|++|  
T Consensus       847 L~~lL~~L~~~G~TVIvI~HdL~-------------------------------------------~i-~~ADrIivLgp  882 (916)
T 3pih_A          847 LVEVLHRLVDRGNTVIVIEHNLD-------------------------------------------VI-KNADHIIDLGP  882 (916)
T ss_dssp             HHHHHHHHHHTTCEEEEECCCHH-------------------------------------------HH-TTCSEEEEEES
T ss_pred             HHHHHHHHHhcCCEEEEEeCCHH-------------------------------------------HH-HhCCEEEEecC
Confidence            99999999877788888888753                                           23 459999999  


Q ss_pred             ----eCCeEEeeCCcccch
Q psy8397         171 ----AEGHCVYKGSSANTI  185 (203)
Q Consensus       171 ----~~G~i~~~g~~~~~~  185 (203)
                          ++|+|++.|+|+++.
T Consensus       883 ~gg~~~G~Iv~~Gtpeel~  901 (916)
T 3pih_A          883 EGGKEGGYIVATGTPEEIA  901 (916)
T ss_dssp             SSGGGCCEEEEEESHHHHH
T ss_pred             CCCCCCCEEEEEcCHHHHH
Confidence                899999999999876

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.89  E-value=2.5e-23  Score=206.32  Aligned_cols=121  Identities=25%  Similarity=0.276  Sum_probs=106.3

Q ss_pred             ccCCCCHhHHHhH-----HHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHH
Q psy8397          19 YSHRISVDDILDT-----IGLVDDILDTIGLV-LSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQ   92 (203)
Q Consensus        19 ~~~~~~~~~~~~~-----~~~v~~~L~~~~L~-~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~   92 (203)
                      +...+|+.+++..     .+++.++++.+||. +..++++++||||||||++|||+|+.+|++|||||||+|||+.++..
T Consensus       507 ~~~~ltv~e~l~~~~~~~~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~  586 (986)
T 2iw3_A          507 THSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAW  586 (986)
T ss_dssp             CCTTSBHHHHHHTTCSSCHHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHH
T ss_pred             cccCCcHHHHHHHhhcCHHHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHH
Confidence            3456788887642     56789999999995 68899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeC
Q psy8397          93 CVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAE  172 (203)
Q Consensus        93 i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~  172 (203)
                      +++.|++   .|.|||++||+++                                           .+..+||++++|++
T Consensus       587 l~~~L~~---~g~tvIivSHdl~-------------------------------------------~l~~~adrii~L~~  620 (986)
T 2iw3_A          587 LVNYLNT---CGITSITISHDSV-------------------------------------------FLDNVCEYIINYEG  620 (986)
T ss_dssp             HHHHHHH---SCSEEEEECSCHH-------------------------------------------HHHHHCSEEEEEET
T ss_pred             HHHHHHh---CCCEEEEEECCHH-------------------------------------------HHHHhCCEEEEEEC
Confidence            9999988   5889999999864                                           46789999999999


Q ss_pred             CeEE-eeCCcccch
Q psy8397         173 GHCV-YKGSSANTI  185 (203)
Q Consensus       173 G~i~-~~g~~~~~~  185 (203)
                      |+++ +.|+++++.
T Consensus       621 G~iv~~~G~~~e~~  634 (986)
T 2iw3_A          621 LKLRKYKGNFTEFV  634 (986)
T ss_dssp             TEEEEEESCHHHHH
T ss_pred             CeeecCCCCHHHHH
Confidence            9996 689887764

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.88  E-value=3.7e-23  Score=193.94  Aligned_cols=91  Identities=21%  Similarity=0.361  Sum_probs=80.5

Q ss_pred             CHhHHHhH---HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy8397          24 SVDDILDT---IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKAL  100 (203)
Q Consensus        24 ~~~~~~~~---~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l  100 (203)
                      ++.+++..   +++++++++.+|+....++++.+|||||||||+||+||+.+|++|||||||++||+.++..+++.|+++
T Consensus       105 ~v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l  184 (538)
T 3ozx_A          105 TVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIREL  184 (538)
T ss_dssp             BHHHHHHHHCCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred             cHHHHhhcchhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence            56654432   236788999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCCeEEEEecCCC
Q psy8397         101 ARGGRTIVCTIHQPS  115 (203)
Q Consensus       101 ~~~g~tvi~~tH~~~  115 (203)
                      .+ |.|||++||+++
T Consensus       185 ~~-g~tii~vsHdl~  198 (538)
T 3ozx_A          185 LK-NKYVIVVDHDLI  198 (538)
T ss_dssp             CT-TSEEEEECSCHH
T ss_pred             hC-CCEEEEEEeChH
Confidence            75 788888888864

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=99.88  E-value=1.9e-22  Score=199.36  Aligned_cols=109  Identities=27%  Similarity=0.388  Sum_probs=96.8

Q ss_pred             HHHHHHHHHcCCcc-cccccCCCCCHHHHHHHHHHHHHhcCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEE
Q psy8397          33 GLVDDILDTIGLVL-SKHTLCGRLSGGQKKRLSIALELIDNP---PIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIV  108 (203)
Q Consensus        33 ~~v~~~L~~~~L~~-~~~~~v~~LSgGqrqrl~iA~aL~~~P---~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi  108 (203)
                      .++.++++.+||.. ..++++.+|||||||||+||++|+.+|   ++|||||||+|||+.++..+++.|++++++|.|||
T Consensus       823 ~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVI  902 (972)
T 2r6f_A          823 KRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVL  902 (972)
T ss_dssp             HHHHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred             HHHHHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence            34578999999987 789999999999999999999999875   99999999999999999999999999987778888


Q ss_pred             EEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEE------eCCeEEeeCCcc
Q psy8397         109 CTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVI------AEGHCVYKGSSA  182 (203)
Q Consensus       109 ~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl------~~G~i~~~g~~~  182 (203)
                      ++||+++                                           .+ ..||++++|      ++|++++.|+++
T Consensus       903 visHdl~-------------------------------------------~i-~~aDrIivL~p~gG~~~G~Iv~~g~~~  938 (972)
T 2r6f_A          903 VIEHNLD-------------------------------------------VI-KTADYIIDLGPEGGDRGGQIVAVGTPE  938 (972)
T ss_dssp             EECCCHH-------------------------------------------HH-TTCSEEEEECSSSTTSCCSEEEEESHH
T ss_pred             EEcCCHH-------------------------------------------HH-HhCCEEEEEcCCCCCCCCEEEEecCHH
Confidence            8888753                                           23 579999999      789999999998


Q ss_pred             cch
Q psy8397         183 NTI  185 (203)
Q Consensus       183 ~~~  185 (203)
                      ++.
T Consensus       939 el~  941 (972)
T 2r6f_A          939 EVA  941 (972)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            764

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=99.87  E-value=1.4e-22  Score=198.46  Aligned_cols=109  Identities=28%  Similarity=0.390  Sum_probs=97.7

Q ss_pred             HHHHHHHHHcCCcc-cccccCCCCCHHHHHHHHHHHHHhcC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEE
Q psy8397          33 GLVDDILDTIGLVL-SKHTLCGRLSGGQKKRLSIALELIDN---PPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIV  108 (203)
Q Consensus        33 ~~v~~~L~~~~L~~-~~~~~v~~LSgGqrqrl~iA~aL~~~---P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi  108 (203)
                      +++.++++.+||.. ..++++.+|||||||||+||++|+.+   |++|||||||+|||+..+..+++.|++++++|.|||
T Consensus       708 ~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVI  787 (842)
T 2vf7_A          708 FRALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVI  787 (842)
T ss_dssp             HHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred             HHHHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence            46788999999987 46999999999999999999999996   799999999999999999999999999997788888


Q ss_pred             EEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEE------eCCeEEeeCCcc
Q psy8397         109 CTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVI------AEGHCVYKGSSA  182 (203)
Q Consensus       109 ~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl------~~G~i~~~g~~~  182 (203)
                      ++||+++                                           .+ ..||++++|      ++|++++.|+++
T Consensus       788 visHdl~-------------------------------------------~i-~~aDrii~L~p~~g~~~G~Iv~~g~~~  823 (842)
T 2vf7_A          788 AVEHKMQ-------------------------------------------VV-AASDWVLDIGPGAGEDGGRLVAQGTPA  823 (842)
T ss_dssp             EECCCHH-------------------------------------------HH-TTCSEEEEECSSSGGGCCSEEEEECHH
T ss_pred             EEcCCHH-------------------------------------------HH-HhCCEEEEECCCCCCCCCEEEEEcCHH
Confidence            8888753                                           35 689999999      799999999998


Q ss_pred             cch
Q psy8397         183 NTI  185 (203)
Q Consensus       183 ~~~  185 (203)
                      ++.
T Consensus       824 el~  826 (842)
T 2vf7_A          824 EVA  826 (842)
T ss_dssp             HHT
T ss_pred             HHH
Confidence            765

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=99.87  E-value=2.7e-22  Score=197.92  Aligned_cols=108  Identities=29%  Similarity=0.444  Sum_probs=94.7

Q ss_pred             HHHHHHHHcCCccc-ccccCCCCCHHHHHHHHHHHHHhcCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEE
Q psy8397          34 LVDDILDTIGLVLS-KHTLCGRLSGGQKKRLSIALELIDNPP--IMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCT  110 (203)
Q Consensus        34 ~v~~~L~~~~L~~~-~~~~v~~LSgGqrqrl~iA~aL~~~P~--vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~  110 (203)
                      ...+.|..+||... .++++.+|||||||||+||++|+.+|+  +|||||||+|||+..+..+++.|++++++|.|||++
T Consensus       443 ~~~~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivV  522 (916)
T 3pih_A          443 KRLEFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVV  522 (916)
T ss_dssp             HHHHHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEE
T ss_pred             HHHHHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEE
Confidence            44567888999864 699999999999999999999999887  999999999999999999999999998667777777


Q ss_pred             ecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEE------eCCeEEeeCCcccc
Q psy8397         111 IHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVI------AEGHCVYKGSSANT  184 (203)
Q Consensus       111 tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl------~~G~i~~~g~~~~~  184 (203)
                      ||+++                                           .+ ..||+|++|      ++|++++.|+++++
T Consensus       523 tHd~~-------------------------------------------~~-~~aD~ii~lgpgag~~~G~iv~~G~~~e~  558 (916)
T 3pih_A          523 EHDEE-------------------------------------------VI-RNADHIIDIGPGGGTNGGRVVFQGTVDEL  558 (916)
T ss_dssp             CCCHH-------------------------------------------HH-HTCSEEEEEESSSGGGCSEEEEEECHHHH
T ss_pred             eCCHH-------------------------------------------HH-HhCCEEEEEcCCcccCCCEEEEeechhhh
Confidence            77752                                           23 459999999      89999999999876


Q ss_pred             h
Q psy8397         185 I  185 (203)
Q Consensus       185 ~  185 (203)
                      .
T Consensus       559 ~  559 (916)
T 3pih_A          559 L  559 (916)
T ss_dssp             H
T ss_pred             h
Confidence            4

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.87  E-value=3.2e-22  Score=203.00  Aligned_cols=133  Identities=26%  Similarity=0.320  Sum_probs=103.8

Q ss_pred             CceeEEEeeecccccCCCCHhHHHh--------HHHHHHHHHHHcCCcccc-------ccc----CCCCCHHHHHHHHHH
Q psy8397           6 HGTIWCWQIISAQYSHRISVDDILD--------TIGLVDDILDTIGLVLSK-------HTL----CGRLSGGQKKRLSIA   66 (203)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~v~~~L~~~~L~~~~-------~~~----v~~LSgGqrqrl~iA   66 (203)
                      ....+.+|...  + ...|+.|++.        ..+.+.+.++..++.+..       ++.    ..+||||||||++||
T Consensus      1107 ~~i~~v~Q~~~--l-~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iA 1183 (1284)
T 3g5u_A         1107 AQLGIVSQEPI--L-FDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIA 1183 (1284)
T ss_dssp             TSCEEEESSCC--C-CSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHH
T ss_pred             hceEEECCCCc--c-ccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHH
Confidence            45677777542  3 3468888762        234556666666554332       333    357999999999999


Q ss_pred             HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCC
Q psy8397          67 LELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGG  146 (203)
Q Consensus        67 ~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  146 (203)
                      |||+.+|++|+|||||+|||+.+.+.+.+.|+++ .+|+|+|++||++++                              
T Consensus      1184 Ral~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~-~~~~tvi~isH~l~~------------------------------ 1232 (1284)
T 3g5u_A         1184 RALVRQPHILLLDEATSALDTESEKVVQEALDKA-REGRTCIVIAHRLST------------------------------ 1232 (1284)
T ss_dssp             HHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHH-SSSSCEEEECSCTTG------------------------------
T ss_pred             HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHh-CCCCEEEEEecCHHH------------------------------
Confidence            9999999999999999999999999999999885 357888888888753                              


Q ss_pred             ceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccchh
Q psy8397         147 RTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTIP  186 (203)
Q Consensus       147 ~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~~  186 (203)
                                   + ..||+|++|++|++++.|+++++..
T Consensus      1233 -------------i-~~~dri~vl~~G~i~~~g~~~~l~~ 1258 (1284)
T 3g5u_A         1233 -------------I-QNADLIVVIQNGKVKEHGTHQQLLA 1258 (1284)
T ss_dssp             -------------G-GSCSEEEEEETBEEEEEECHHHHHH
T ss_pred             -------------H-HcCCEEEEEECCEEEEECCHHHHHh
Confidence                         3 4599999999999999999998763

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=99.87  E-value=6.2e-22  Score=195.73  Aligned_cols=109  Identities=27%  Similarity=0.429  Sum_probs=95.6

Q ss_pred             HHHHHHHHHHcCCccc-ccccCCCCCHHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEE
Q psy8397          32 IGLVDDILDTIGLVLS-KHTLCGRLSGGQKKRLSIALELIDNP--PIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIV  108 (203)
Q Consensus        32 ~~~v~~~L~~~~L~~~-~~~~v~~LSgGqrqrl~iA~aL~~~P--~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi  108 (203)
                      .+++ +.|..+||... .++++.+|||||+|||.||++|..+|  ++|+|||||+|||+.....+++.|++|+..|.|||
T Consensus       482 ~~Rl-~~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVI  560 (972)
T 2r6f_A          482 RDRL-GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLI  560 (972)
T ss_dssp             HHHH-HHHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEE
T ss_pred             HHHH-HHhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence            4455 45899999865 79999999999999999999999985  99999999999999999999999999987788888


Q ss_pred             EEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEE------eCCeEEeeCCcc
Q psy8397         109 CTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVI------AEGHCVYKGSSA  182 (203)
Q Consensus       109 ~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl------~~G~i~~~g~~~  182 (203)
                      +++|+++                                           ++ ..||+|++|      ++|++++.|+++
T Consensus       561 vVeHdl~-------------------------------------------~i-~~ADrIi~LgpgaG~~gG~iv~~G~~~  596 (972)
T 2r6f_A          561 VVEHDED-------------------------------------------TM-LAADYLIDIGPGAGIHGGEVVAAGTPE  596 (972)
T ss_dssp             EECCCHH-------------------------------------------HH-HSCSEEEEECSSSGGGCCSEEEEECTT
T ss_pred             EEecCHH-------------------------------------------HH-HhCCEEEEeCCCccCCCCEEEEecCHH
Confidence            8888753                                           23 479999999      799999999998


Q ss_pred             cch
Q psy8397         183 NTI  185 (203)
Q Consensus       183 ~~~  185 (203)
                      ++.
T Consensus       597 e~~  599 (972)
T 2r6f_A          597 EVM  599 (972)
T ss_dssp             TTT
T ss_pred             HHH
Confidence            875

>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*

Probab=99.86  E-value=5.7e-22  Score=157.49  Aligned_cols=67  Identities=25%  Similarity=0.389  Sum_probs=60.5

Q ss_pred             ccccCCCCCHHHHHHHHHH------HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCC
Q psy8397          48 KHTLCGRLSGGQKKRLSIA------LELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQP  114 (203)
Q Consensus        48 ~~~~v~~LSgGqrqrl~iA------~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~  114 (203)
                      .++++++||||||||++||      ++|+.+|+++||||||+|||+.++..+.+.++++.++|.|||++||++
T Consensus        51 ~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~  123 (148)
T 1f2t_B           51 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE  123 (148)
T ss_dssp             EEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG
T ss_pred             ccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH
Confidence            5678999999999999886      899999999999999999999999999999999876677777777774

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=99.86  E-value=7.7e-22  Score=176.35  Aligned_cols=85  Identities=28%  Similarity=0.402  Sum_probs=75.7

Q ss_pred             cccCCCCCHHHHHHHHHHHHHh------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhh
Q psy8397          49 HTLCGRLSGGQKKRLSIALELI------DNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMV  122 (203)
Q Consensus        49 ~~~v~~LSgGqrqrl~iA~aL~------~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~  122 (203)
                      ++++.+||||||||++||+||+      .+|++|||||||+|||+.++..+++.|+++.+.|.|||++||+++       
T Consensus       274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~-------  346 (365)
T 3qf7_A          274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDRE-------  346 (365)
T ss_dssp             EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHH-------
T ss_pred             CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchH-------
Confidence            5788999999999999999999      799999999999999999999999999999866777777777752       


Q ss_pred             hccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEe
Q psy8397         123 DHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVY  177 (203)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~  177 (203)
                                                           ....||++++|++|+++.
T Consensus       347 -------------------------------------~~~~~d~~~~l~~G~i~~  364 (365)
T 3qf7_A          347 -------------------------------------FSEAFDRKLRITGGVVVN  364 (365)
T ss_dssp             -------------------------------------HHTTCSCEEEEETTEEC-
T ss_pred             -------------------------------------HHHhCCEEEEEECCEEEe
Confidence                                                 356799999999999875

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.86  E-value=6.2e-22  Score=201.37  Aligned_cols=131  Identities=27%  Similarity=0.386  Sum_probs=102.6

Q ss_pred             eeEEEeeecccccCCCCHhHHHh--------HHHHHHHHHHHcCCcc-------cccccCC----CCCHHHHHHHHHHHH
Q psy8397           8 TIWCWQIISAQYSHRISVDDILD--------TIGLVDDILDTIGLVL-------SKHTLCG----RLSGGQKKRLSIALE   68 (203)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~--------~~~~v~~~L~~~~L~~-------~~~~~v~----~LSgGqrqrl~iA~a   68 (203)
                      ..+.+|.+.  + ..-|+.||+.        ..+.+.++++..++.+       -.|+.++    +||||||||++||||
T Consensus      1155 i~~V~Qdp~--L-F~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARA 1231 (1321)
T 4f4c_A         1155 IAIVSQEPT--L-FDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARA 1231 (1321)
T ss_dssp             EEEECSSCC--C-CSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHH
T ss_pred             eEEECCCCE--e-eCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHH
Confidence            445555322  2 2347777631        2456777777776643       3455554    699999999999999


Q ss_pred             HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCce
Q psy8397          69 LIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRT  148 (203)
Q Consensus        69 L~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t  148 (203)
                      |+.+|+||+||||||+||+.+.+.+.+.|+++. +|+|+|+++|.++.                                
T Consensus      1232 llr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~-~~~TvI~IAHRLsT-------------------------------- 1278 (1321)
T 4f4c_A         1232 LVRNPKILLLDEATSALDTESEKVVQEALDRAR-EGRTCIVIAHRLNT-------------------------------- 1278 (1321)
T ss_dssp             HHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS-SSSEEEEECSSSST--------------------------------
T ss_pred             HHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc-CCCEEEEeccCHHH--------------------------------
Confidence            999999999999999999999999999988754 47888888888753                                


Q ss_pred             EEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccchh
Q psy8397         149 IVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTIP  186 (203)
Q Consensus       149 vi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~~  186 (203)
                                  ...||+|+||++|+|++.|++++++.
T Consensus      1279 ------------i~~aD~I~Vld~G~IvE~Gth~eLl~ 1304 (1321)
T 4f4c_A         1279 ------------VMNADCIAVVSNGTIIEKGTHTQLMS 1304 (1321)
T ss_dssp             ------------TTTCSEEEEESSSSEEEEECHHHHHH
T ss_pred             ------------HHhCCEEEEEECCEEEEECCHHHHHh
Confidence                        35699999999999999999999874

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=99.85  E-value=2.2e-21  Score=190.06  Aligned_cols=111  Identities=27%  Similarity=0.425  Sum_probs=96.9

Q ss_pred             HHHHHHHHHHHcCCccc-ccccCCCCCHHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeE
Q psy8397          31 TIGLVDDILDTIGLVLS-KHTLCGRLSGGQKKRLSIALELIDNP--PIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTI  107 (203)
Q Consensus        31 ~~~~v~~~L~~~~L~~~-~~~~v~~LSgGqrqrl~iA~aL~~~P--~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tv  107 (203)
                      +.++++ .+..+||... .++++.+|||||||||.||++|+.+|  ++|+|||||+|||+..++.+++.|++|+..|.||
T Consensus       356 i~~rl~-~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TV  434 (842)
T 2vf7_A          356 LVKRLD-VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSL  434 (842)
T ss_dssp             HHHHHH-HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEE
T ss_pred             HHHHHH-HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEE
Confidence            445565 6889999865 79999999999999999999999999  5999999999999999999999999998777777


Q ss_pred             EEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEE------eCCeEEeeCCc
Q psy8397         108 VCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVI------AEGHCVYKGSS  181 (203)
Q Consensus       108 i~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl------~~G~i~~~g~~  181 (203)
                      |+++|+++                                            ....||+|++|      .+|++++.|++
T Consensus       435 IvVeHdl~--------------------------------------------~l~~aD~ii~lgpgaG~~~G~iv~~g~~  470 (842)
T 2vf7_A          435 FVVEHDLD--------------------------------------------VIRRADWLVDVGPEAGEKGGEILYSGPP  470 (842)
T ss_dssp             EEECCCHH--------------------------------------------HHTTCSEEEEECSSSGGGCCSEEEEECG
T ss_pred             EEEcCCHH--------------------------------------------HHHhCCEEEEeCCCcccCCCEEEEecCH
Confidence            77777752                                            34579999999      79999999999


Q ss_pred             ccchh
Q psy8397         182 ANTIP  186 (203)
Q Consensus       182 ~~~~~  186 (203)
                      +++..
T Consensus       471 ~~~~~  475 (842)
T 2vf7_A          471 EGLKH  475 (842)
T ss_dssp             GGGGG
T ss_pred             HHHHh
Confidence            88753

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.85  E-value=1.6e-21  Score=197.84  Aligned_cols=130  Identities=25%  Similarity=0.306  Sum_probs=100.1

Q ss_pred             eeEEEeeecccccCCCCHhHHHhH------HHHHHHHHHHcCCc-----------ccccccCCCCCHHHHHHHHHHHHHh
Q psy8397           8 TIWCWQIISAQYSHRISVDDILDT------IGLVDDILDTIGLV-----------LSKHTLCGRLSGGQKKRLSIALELI   70 (203)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~v~~~L~~~~L~-----------~~~~~~v~~LSgGqrqrl~iA~aL~   70 (203)
                      ..+++|..  .++. -|+.|++..      .+++.+.++..++.           .....+..+||||||||++|||||+
T Consensus       466 i~~v~Q~~--~l~~-~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~  542 (1284)
T 3g5u_A          466 IGVVSQEP--VLFA-TTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALV  542 (1284)
T ss_dssp             EEEECSSC--CCCS-SCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHH
T ss_pred             eEEEcCCC--ccCC-ccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHh
Confidence            56677653  2333 488887643      33455555544432           2234455689999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEE
Q psy8397          71 DNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIV  150 (203)
Q Consensus        71 ~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi  150 (203)
                      .+|++|||||||++||+.+.+.+.+.++.+. +|+|+|++||+++                                   
T Consensus       543 ~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~-----------------------------------  586 (1284)
T 3g5u_A          543 RNPKILLLDEATSALDTESEAVVQAALDKAR-EGRTTIVIAHRLS-----------------------------------  586 (1284)
T ss_dssp             HCCSEEEEESTTCSSCHHHHHHHHHHHHHHH-TTSEEEEECSCHH-----------------------------------
T ss_pred             cCCCEEEEECCCCCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH-----------------------------------
Confidence            9999999999999999999999999998764 4778888888753                                   


Q ss_pred             EeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         151 CTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       151 ~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                              .+ ..||+|++|++|++++.|+++++.
T Consensus       587 --------~i-~~~d~i~vl~~G~i~~~g~~~~l~  612 (1284)
T 3g5u_A          587 --------TV-RNADVIAGFDGGVIVEQGNHDELM  612 (1284)
T ss_dssp             --------HH-TTCSEEEECSSSCCCCEECHHHHH
T ss_pred             --------HH-HcCCEEEEEECCEEEEECCHHHHH
Confidence                    24 449999999999999999998875

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.85  E-value=6.8e-22  Score=196.08  Aligned_cols=103  Identities=24%  Similarity=0.375  Sum_probs=87.6

Q ss_pred             HHHHHHHHHHcCCcc-c-ccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEE
Q psy8397          32 IGLVDDILDTIGLVL-S-KHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVC  109 (203)
Q Consensus        32 ~~~v~~~L~~~~L~~-~-~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~  109 (203)
                      .++++++++.+||.. . .++++++|||||||||+|||+|+.+|++|||||||+|||+.+...+++.|+++   |.|||+
T Consensus       877 ~~~i~~~Le~lGL~~~~~~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~---g~tVIi  953 (986)
T 2iw3_A          877 RKEIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF---EGGVII  953 (986)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC---SSEEEE
T ss_pred             HHHHHHHHHHcCCCchhhcCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh---CCEEEE
Confidence            356888999999975 3 68899999999999999999999999999999999999999999988887654   457777


Q ss_pred             EecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCC
Q psy8397         110 TIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGS  180 (203)
Q Consensus       110 ~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~  180 (203)
                      +||+++                                           .+..+||++++|.+|+++..|+
T Consensus       954 ISHD~e-------------------------------------------~v~~l~DrVivL~~G~Iv~~G~  981 (986)
T 2iw3_A          954 ITHSAE-------------------------------------------FTKNLTEEVWAVKDGRMTPSGH  981 (986)
T ss_dssp             ECSCHH-------------------------------------------HHTTTCCEEECCBTTBCCC---
T ss_pred             EECCHH-------------------------------------------HHHHhCCEEEEEECCEEEEeCC
Confidence            777753                                           4678999999999999988774

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.85  E-value=3.4e-21  Score=195.98  Aligned_cols=130  Identities=27%  Similarity=0.311  Sum_probs=102.5

Q ss_pred             eeEEEeeecccccCCCCHhHHHh------HHHHHHHHHHHcCCccc-------ccccC----CCCCHHHHHHHHHHHHHh
Q psy8397           8 TIWCWQIISAQYSHRISVDDILD------TIGLVDDILDTIGLVLS-------KHTLC----GRLSGGQKKRLSIALELI   70 (203)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~------~~~~v~~~L~~~~L~~~-------~~~~v----~~LSgGqrqrl~iA~aL~   70 (203)
                      ..+++|..   +-..-|+.|++.      ..+++.++++..++.+.       .++.+    .+||||||||++||||++
T Consensus       494 i~~v~Q~~---~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~  570 (1321)
T 4f4c_A          494 VAVVSQEP---ALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALV  570 (1321)
T ss_dssp             EEEECSSC---CCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHT
T ss_pred             ccccCCcc---eeeCCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHc
Confidence            45666532   224457777763      24567777776655332       34444    469999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEE
Q psy8397          71 DNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIV  150 (203)
Q Consensus        71 ~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi  150 (203)
                      .+|++||||||||+||+.+.+.+.+.|.++. +|+|+|++||+++.                                  
T Consensus       571 ~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~iiiaHrls~----------------------------------  615 (1321)
T 4f4c_A          571 RNPKILLLDEATSALDAESEGIVQQALDKAA-KGRTTIIIAHRLST----------------------------------  615 (1321)
T ss_dssp             TCCSEEEEESTTTTSCTTTHHHHHHHHHHHH-TTSEEEEECSCTTT----------------------------------
T ss_pred             cCCCEEEEecccccCCHHHHHHHHHHHHHHh-CCCEEEEEcccHHH----------------------------------
Confidence            9999999999999999999999999998875 47888888888752                                  


Q ss_pred             EeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         151 CTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       151 ~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                                ...||+|++|++|+|++.|+.+++.
T Consensus       616 ----------i~~aD~Iivl~~G~ive~Gth~eL~  640 (1321)
T 4f4c_A          616 ----------IRNADLIISCKNGQVVEVGDHRALM  640 (1321)
T ss_dssp             ----------TTTCSEEEEEETTEEEEEECHHHHH
T ss_pred             ----------HHhCCEEEEeeCCeeeccCCHHHHH
Confidence                      4679999999999999999999875

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=99.81  E-value=1.5e-19  Score=161.29  Aligned_cols=80  Identities=24%  Similarity=0.391  Sum_probs=71.6

Q ss_pred             CCHHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCch
Q psy8397          55 LSGGQKKRLSIALELIDNP--PIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNST  132 (203)
Q Consensus        55 LSgGqrqrl~iA~aL~~~P--~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~  132 (203)
                      ||||||||++||++|+.+|  ++|||||||+|||+..+..+.+.|+++. +|.|||+|||+++                 
T Consensus       296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~~-----------------  357 (415)
T 4aby_A          296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLAQ-----------------  357 (415)
T ss_dssp             SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCHH-----------------
T ss_pred             cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcHH-----------------
Confidence            5999999999999999999  9999999999999999999999999997 5788888888752                 


Q ss_pred             hHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEE----eCCeEEeeC
Q psy8397         133 NQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVI----AEGHCVYKG  179 (203)
Q Consensus       133 ~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl----~~G~i~~~g  179 (203)
                                                 +...||++++|    .+|+++...
T Consensus       358 ---------------------------~~~~~d~i~~l~k~~~~G~~~~~~  381 (415)
T 4aby_A          358 ---------------------------IAARAHHHYKVEKQVEDGRTVSHV  381 (415)
T ss_dssp             ---------------------------HHTTCSEEEEEEEEEETTEEEEEE
T ss_pred             ---------------------------HHhhcCeEEEEEEeccCCceEEEE
Confidence                                       34679999999    999987653

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.76  E-value=3.8e-18  Score=149.21  Aligned_cols=67  Identities=24%  Similarity=0.354  Sum_probs=60.4

Q ss_pred             cccccCCCCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCC
Q psy8397          47 SKHTLCGRLSGGQKKRLSIALELI----DNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQP  114 (203)
Q Consensus        47 ~~~~~v~~LSgGqrqrl~iA~aL~----~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~  114 (203)
                      ..+.++..||||||||++||++|+    .+|++|||||||++||+..+..+++.|+++. +|.|+|++||++
T Consensus       212 ~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~  282 (322)
T 1e69_A          212 RRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNK  282 (322)
T ss_dssp             SCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCT
T ss_pred             cccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEECCH
Confidence            356788999999999999999997    6889999999999999999999999999984 478888888885

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=99.75  E-value=1.4e-18  Score=153.06  Aligned_cols=68  Identities=25%  Similarity=0.407  Sum_probs=59.9

Q ss_pred             cccccCCCCCHHHHH------HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCC
Q psy8397          47 SKHTLCGRLSGGQKK------RLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQP  114 (203)
Q Consensus        47 ~~~~~v~~LSgGqrq------rl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~  114 (203)
                      ..++++..|||||||      |+++|++|+.+|++|||||||+|||+..+..+++.|+++.++|.|||++||++
T Consensus       241 ~~~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~  314 (339)
T 3qkt_A          241 GKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE  314 (339)
T ss_dssp             TEEECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCG
T ss_pred             cCcCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChH
Confidence            356788999999999      67788888899999999999999999999999999999876677777777773

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=99.74  E-value=3.1e-18  Score=158.79  Aligned_cols=64  Identities=22%  Similarity=0.361  Sum_probs=58.5

Q ss_pred             ccCCCC-CHHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCC
Q psy8397          50 TLCGRL-SGGQKKRLSIALELIDNP--PIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQP  114 (203)
Q Consensus        50 ~~v~~L-SgGqrqrl~iA~aL~~~P--~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~  114 (203)
                      ++++.| ||||||||+||++|+.+|  ++|||||||+|||+.++..+.+.|+++++ |.|||++||++
T Consensus       392 ~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~  458 (517)
T 4ad8_A          392 GPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLA  458 (517)
T ss_dssp             CBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCH
T ss_pred             ccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCH
Confidence            567788 999999999999999999  99999999999999999999999999986 77777777774

>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*

Probab=99.72  E-value=2.8e-17  Score=133.51  Aligned_cols=65  Identities=17%  Similarity=0.296  Sum_probs=55.2

Q ss_pred             ccccCCCCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecC
Q psy8397          48 KHTLCGRLSGGQKKRLSIALELID----NPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQ  113 (203)
Q Consensus        48 ~~~~v~~LSgGqrqrl~iA~aL~~----~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~  113 (203)
                      ..+++..||||||||++||++|+.    +|+++||||||+|||+.++..+.+.|+++.+ +.++|++||+
T Consensus        58 ~~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~-~~~~ivith~  126 (173)
T 3kta_B           58 DVKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK-ESQFIVITLR  126 (173)
T ss_dssp             SCCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSC
T ss_pred             cccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc-CCEEEEEEec
Confidence            455678899999999999999974    4699999999999999999999999998863 3456666665

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=99.70  E-value=1.5e-17  Score=149.12  Aligned_cols=86  Identities=15%  Similarity=0.200  Sum_probs=75.8

Q ss_pred             cccCC-CCCHHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchh
Q psy8397          49 HTLCG-RLSGGQKKRLSIALELI---------DNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATI  118 (203)
Q Consensus        49 ~~~v~-~LSgGqrqrl~iA~aL~---------~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~  118 (203)
                      +++++ .||||||||++||++|+         .+|+||||||||++||+..+..+++.++++.   .|+|++||. +   
T Consensus       259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th~-~---  331 (359)
T 2o5v_A          259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTEL-A---  331 (359)
T ss_dssp             TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESSC-C---
T ss_pred             CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEec-c---
Confidence            56677 79999999999999999         8999999999999999999999999998764   567777762 1   


Q ss_pred             hhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccc
Q psy8397         119 FEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANT  184 (203)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~  184 (203)
                                                              .   .+|+++++.+|+++..|+++++
T Consensus       332 ----------------------------------------~---~~~~i~~l~~G~i~~~g~~~~~  354 (359)
T 2o5v_A          332 ----------------------------------------P---GAALTLRAQAGRFTPVADEEMQ  354 (359)
T ss_dssp             ----------------------------------------T---TCSEEEEEETTEEEECCCTTTS
T ss_pred             ----------------------------------------c---cCCEEEEEECCEEEecCCHHHH
Confidence                                                    2   7999999999999999999876

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=99.65  E-value=6.9e-18  Score=155.58  Aligned_cols=107  Identities=12%  Similarity=0.144  Sum_probs=83.9

Q ss_pred             HHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHH--HhcCCCE----EEEeC-CCCCCCHHHHHHHHHHHHHHHhCCCe
Q psy8397          34 LVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALE--LIDNPPI----MFLDE-PTTGLDSNSTNQCVAMLKALARGGRT  106 (203)
Q Consensus        34 ~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~a--L~~~P~v----LlLDE-Pt~gLD~~~~~~i~~~l~~l~~~g~t  106 (203)
                      ++.++++.+|+.+..+  +.+|||||||||+||++  |+.+|++    ||||| ||++||+. ...+.+.++++   |.|
T Consensus       217 ~~~~ll~~~gl~~~~~--~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~---~~t  290 (460)
T 2npi_A          217 NKQPMVKNFGLERINE--NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEKL---NVN  290 (460)
T ss_dssp             CBCCEECCCCSSSGGG--CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHT---TCC
T ss_pred             HHHHHHHHhCCCcccc--hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHHh---CCC
Confidence            4556788889887766  88999999999999999  9999999    99999 99999998 54455444432   678


Q ss_pred             EEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCE-----EEEEe-CCeEEeeCC
Q psy8397         107 IVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDH-----LYVIA-EGHCVYKGS  180 (203)
Q Consensus       107 vi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~-----v~vl~-~G~i~~~g~  180 (203)
                      +|++||+.+.++.                                     ...+..+||+     +++|+ +|+++ .|+
T Consensus       291 viiVth~~~~~l~-------------------------------------~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~  332 (460)
T 2npi_A          291 IMLVLCSETDPLW-------------------------------------EKVKKTFGPELGNNNIFFIPKLDGVS-AVD  332 (460)
T ss_dssp             EEEEECCSSCTHH-------------------------------------HHHHHHHHHHHCGGGEEEECCCTTCC-CCC
T ss_pred             EEEEEccCchhhh-------------------------------------HHHHHHhcccccCCEEEEEeCCCcEE-ECC
Confidence            8888888641100                                     0035678999     99999 99999 898


Q ss_pred             cccc
Q psy8397         181 SANT  184 (203)
Q Consensus       181 ~~~~  184 (203)
                      ++++
T Consensus       333 ~~~~  336 (460)
T 2npi_A          333 DVYK  336 (460)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8765

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=99.64  E-value=2.6e-16  Score=127.57  Aligned_cols=64  Identities=11%  Similarity=0.062  Sum_probs=57.1

Q ss_pred             cccccCCCCCHHHHHHHHHHHH-----HhcCCCEEEEeC--CCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecC
Q psy8397          47 SKHTLCGRLSGGQKKRLSIALE-----LIDNPPIMFLDE--PTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQ  113 (203)
Q Consensus        47 ~~~~~v~~LSgGqrqrl~iA~a-----L~~~P~vLlLDE--Pt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~  113 (203)
                      ..++++.+||||||||++||++     ++.+|++++|||  ||++||+..++.+.+.+++   .+.|+|++||+
T Consensus        69 ~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~---~~~~~i~~~H~  139 (178)
T 1ye8_A           69 LVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD---PNVNVVATIPI  139 (178)
T ss_dssp             EETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC---TTSEEEEECCS
T ss_pred             cccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc---CCCeEEEEEcc
Confidence            5678888999999999999996     999999999999  9999999999998888765   46778888874

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=99.63  E-value=5.9e-17  Score=129.36  Aligned_cols=75  Identities=17%  Similarity=0.216  Sum_probs=63.8

Q ss_pred             HcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH----------------HHHHHHHHHHHHHhCC
Q psy8397          41 TIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSN----------------STNQCVAMLKALARGG  104 (203)
Q Consensus        41 ~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~----------------~~~~i~~~l~~l~~~g  104 (203)
                      ..|.....+ .....|||||||++||++++.+|++|+|||||++||+.                .+..+++.+++++++|
T Consensus        71 ~~g~~~~~~-~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g  149 (171)
T 4gp7_A           71 QLGKLTVVD-ATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREG  149 (171)
T ss_dssp             HTTCCEEEE-SCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHT
T ss_pred             hCCCeEEEE-CCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcC
Confidence            345543333 33456999999999999999999999999999999999                6688999999988779


Q ss_pred             CeEEEEecCCCc
Q psy8397         105 RTIVCTIHQPSA  116 (203)
Q Consensus       105 ~tvi~~tH~~~~  116 (203)
                      .|+|++||++++
T Consensus       150 ~tvi~vtH~~~~  161 (171)
T 4gp7_A          150 FRYVYILNSPEE  161 (171)
T ss_dssp             CSEEEEECSHHH
T ss_pred             CcEEEEeCCHHH
Confidence            999999999865

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=99.63  E-value=1.4e-15  Score=135.34  Aligned_cols=81  Identities=25%  Similarity=0.375  Sum_probs=63.9

Q ss_pred             HHHHHHHHHcCCccc------------cc----ccCCCCCHHHHHHH------HHHHHHhcC-CCEEEEeCCCCCCCHHH
Q psy8397          33 GLVDDILDTIGLVLS------------KH----TLCGRLSGGQKKRL------SIALELIDN-PPIMFLDEPTTGLDSNS   89 (203)
Q Consensus        33 ~~v~~~L~~~~L~~~------------~~----~~v~~LSgGqrqrl------~iA~aL~~~-P~vLlLDEPt~gLD~~~   89 (203)
                      +.+.+.++.+++...            .+    .++..|||||+||+      ++|++|+.+ |++|||||||+|||+..
T Consensus       243 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~  322 (371)
T 3auy_A          243 KYLNEAFSEFDLPYSFVELTKDFEVRVHAPNGVLTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENR  322 (371)
T ss_dssp             HHHHHHHHHTTCSCSCEEECTTCCEEEEETTEEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHH
T ss_pred             HHHHHHHHHhcCcceEEEEccceeEEEEcCCCccchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHH
Confidence            345667777766441            11    56778999999988      567889999 99999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCeEEEEecCC
Q psy8397          90 TNQCVAMLKALARGGRTIVCTIHQP  114 (203)
Q Consensus        90 ~~~i~~~l~~l~~~g~tvi~~tH~~  114 (203)
                      +..+.+.|+++. ++.+||+|||++
T Consensus       323 ~~~l~~~l~~~~-~~~~vi~~th~~  346 (371)
T 3auy_A          323 RAKLAEIFRKVK-SIPQMIIITHHR  346 (371)
T ss_dssp             HHHHHHHHHHCC-SCSEEEEEESCG
T ss_pred             HHHHHHHHHHhc-cCCeEEEEEChH
Confidence            999999999864 335677777764

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=99.61  E-value=1.8e-15  Score=136.76  Aligned_cols=65  Identities=22%  Similarity=0.292  Sum_probs=57.0

Q ss_pred             cccCCCCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecC
Q psy8397          49 HTLCGRLSGGQKKRLSIALELI----DNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQ  113 (203)
Q Consensus        49 ~~~v~~LSgGqrqrl~iA~aL~----~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~  113 (203)
                      .+++..||||||||++||++|+    .+|+++||||||++||+..+..+.+.|+++..+|.++|++||+
T Consensus       328 ~~~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~  396 (430)
T 1w1w_A          328 FKDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLK  396 (430)
T ss_dssp             CCCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSC
T ss_pred             ccccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECC
Confidence            3556679999999999999999    5899999999999999999999999999987556677777776

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=99.49  E-value=1.9e-14  Score=133.47  Aligned_cols=73  Identities=8%  Similarity=-0.087  Sum_probs=68.2

Q ss_pred             HcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH-----HHHHHHHHHHHHHhCCCeEEEEecCC
Q psy8397          41 TIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSN-----STNQCVAMLKALARGGRTIVCTIHQP  114 (203)
Q Consensus        41 ~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~-----~~~~i~~~l~~l~~~g~tvi~~tH~~  114 (203)
                      .+|+....+.++.+|||||+||+.+|+++..+|++|++| ||+|||+.     .+..++++++.+++.|.|||++||++
T Consensus       340 ~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~  417 (525)
T 1tf7_A          340 RQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSD  417 (525)
T ss_dssp             HTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECS
T ss_pred             hCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcc
Confidence            466777788889999999999999999999999999999 99999999     99999999999998899999999997

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=99.43  E-value=2.9e-15  Score=124.43  Aligned_cols=53  Identities=19%  Similarity=0.140  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCc
Q psy8397          58 GQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSA  116 (203)
Q Consensus        58 Gqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~  116 (203)
                      |||||++|||||+.+|++|||||||+|    ++..+++.|+++ ++|+||| +||++++
T Consensus       108 Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l-~~g~tii-vtHd~~~  160 (208)
T 3b85_A          108 VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRL-GFGSKMV-VTGDITQ  160 (208)
T ss_dssp             EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTB-CTTCEEE-EEEC---
T ss_pred             chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHh-cCCCEEE-EECCHHH
Confidence            999999999999999999999999999    889999999998 6799999 9999864

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=99.31  E-value=1e-13  Score=126.35  Aligned_cols=92  Identities=11%  Similarity=0.067  Sum_probs=77.2

Q ss_pred             HHHHHHHHHcCCcccccccCCCCCHH--HHHHHHHHHHHhc----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy8397          33 GLVDDILDTIGLVLSKHTLCGRLSGG--QKKRLSIALELID----------NPPIMFLDEPTTGLDSNSTNQCVAMLKAL  100 (203)
Q Consensus        33 ~~v~~~L~~~~L~~~~~~~v~~LSgG--qrqrl~iA~aL~~----------~P~vLlLDEPt~gLD~~~~~~i~~~l~~l  100 (203)
                      .++.++++.+++.+..... . ||||  |+||+.||++|++          +|++++|||||+|||+..+.++++.++++
T Consensus       135 ~~~~~~L~~~~L~~~~~~~-~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l  212 (413)
T 1tq4_A          135 FPPDTYLEKMKFYEYDFFI-I-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLN  212 (413)
T ss_dssp             CCHHHHHHHTTGGGCSEEE-E-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCccCCeE-E-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHH
Confidence            4578899999987654333 3 9999  9999999999999          99999999999999999999999999998


Q ss_pred             H-----hCC----CeEEEEecCCCc-hhhhhhhccc
Q psy8397         101 A-----RGG----RTIVCTIHQPSA-TIFEMVDHLG  126 (203)
Q Consensus       101 ~-----~~g----~tvi~~tH~~~~-~~~~~~~~~~  126 (203)
                      .     +.|    .+|+++||++++ -+.++|++|.
T Consensus       213 ~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~  248 (413)
T 1tq4_A          213 CVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLI  248 (413)
T ss_dssp             HHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred             HHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence            4     333    678899999875 4677777773

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=99.30  E-value=2.2e-12  Score=127.73  Aligned_cols=66  Identities=17%  Similarity=0.101  Sum_probs=53.4

Q ss_pred             ccCCCCCHHHHHHHHHHHHH--hcCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHhC-CCeEEEEecCCC
Q psy8397          50 TLCGRLSGGQKKRLSIALEL--IDNPPIMFLDEPTTGLDSNSTNQC-VAMLKALARG-GRTIVCTIHQPS  115 (203)
Q Consensus        50 ~~v~~LSgGqrqrl~iA~aL--~~~P~vLlLDEPt~gLD~~~~~~i-~~~l~~l~~~-g~tvi~~tH~~~  115 (203)
                      .....+|+|++++..+|+++  +.+|+++||||||+|+|+.....+ +.+++.+.++ |.|+|++||+.+
T Consensus       717 ~l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~e  786 (934)
T 3thx_A          717 SQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHE  786 (934)
T ss_dssp             ------CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGG
T ss_pred             hHHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHH
Confidence            34457899999999999988  999999999999999999999888 7788888864 889999999853

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=99.16  E-value=4.4e-11  Score=118.31  Aligned_cols=77  Identities=14%  Similarity=0.134  Sum_probs=59.3

Q ss_pred             HHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHh-CCCeEEEEecCCCc
Q psy8397          39 LDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV-AMLKALAR-GGRTIVCTIHQPSA  116 (203)
Q Consensus        39 L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~-~~l~~l~~-~g~tvi~~tH~~~~  116 (203)
                      +..+|+.+......+.+|+||+|++.++++ +.+|+++||||||+|||+.....+. .+++.+.+ .|.|+|++||+++.
T Consensus       720 ~~~ig~~d~l~~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el  798 (918)
T 3thx_B          720 FTRMGAADNIYKGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPV  798 (918)
T ss_dssp             EEEC----------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGG
T ss_pred             HHhCChHHHHHHhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHH
Confidence            344555556667778899999999999998 8999999999999999999999987 78888865 59999999999753

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=99.15  E-value=1.1e-10  Score=99.59  Aligned_cols=63  Identities=16%  Similarity=0.193  Sum_probs=50.3

Q ss_pred             cCCCCCHHH-HHHHHHHHHHhcCCCEEEEeCCCC---C---CCH-HHHHHHHHHHHHHHhC-CCeEEEEecCC
Q psy8397          51 LCGRLSGGQ-KKRLSIALELIDNPPIMFLDEPTT---G---LDS-NSTNQCVAMLKALARG-GRTIVCTIHQP  114 (203)
Q Consensus        51 ~v~~LSgGq-rqrl~iA~aL~~~P~vLlLDEPt~---g---LD~-~~~~~i~~~l~~l~~~-g~tvi~~tH~~  114 (203)
                      .+..+|.++ +|++. |+++.++|+++|+||||+   +   +|. .....+++.|++++++ |+|||++||+.
T Consensus       126 ~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~  197 (296)
T 1cr0_A          126 SFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLK  197 (296)
T ss_dssp             CCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCCEEEEEEECC
T ss_pred             CCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecC
Confidence            446789998 67776 999999999999999999   5   555 6778899999999765 99999999995

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=99.14  E-value=3.9e-11  Score=119.89  Aligned_cols=73  Identities=15%  Similarity=0.066  Sum_probs=56.2

Q ss_pred             cCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH-HHHHHHHHHHHhC-CCeEEEEecCCC
Q psy8397          42 IGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNST-NQCVAMLKALARG-GRTIVCTIHQPS  115 (203)
Q Consensus        42 ~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~-~~i~~~l~~l~~~-g~tvi~~tH~~~  115 (203)
                      +|+.+......+++|+|+++ +++|++++.+|+++|||||++|+|+... ..++.+++.+.++ |.|+|++||+++
T Consensus       839 ig~~d~~~~~~stf~~em~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~e  913 (1022)
T 2o8b_B          839 LGASDRIMSGESTFFVELSE-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHS  913 (1022)
T ss_dssp             CC---------CHHHHHHHH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHH
T ss_pred             cCCHHHHhhchhhhHHHHHH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHH
Confidence            45555455556778888876 9999999999999999999999999985 5578999999876 899999999965

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=99.09  E-value=1.7e-10  Score=98.03  Aligned_cols=78  Identities=18%  Similarity=0.162  Sum_probs=64.9

Q ss_pred             HHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC--CCCHHHH---HHHHHHHHHHHh-CCCeEE
Q psy8397          35 VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTT--GLDSNST---NQCVAMLKALAR-GGRTIV  108 (203)
Q Consensus        35 v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~--gLD~~~~---~~i~~~l~~l~~-~g~tvi  108 (203)
                      +.++++.+++.+..++++..||+|+++++   ++++.+|+++++||||+  ++|+...   ..+++.|+.+.+ .|+|||
T Consensus        99 ~~~~~~~l~l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi  175 (279)
T 1nlf_A           99 RQAVADGLLIQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIV  175 (279)
T ss_dssp             HHHHHHHEEECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEE
T ss_pred             hhhccCceEEeecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEE
Confidence            34567888888888889999999998765   68888999999999999  9998554   788888888864 599999


Q ss_pred             EEecCCC
Q psy8397         109 CTIHQPS  115 (203)
Q Consensus       109 ~~tH~~~  115 (203)
                      +++|+..
T Consensus       176 ~i~H~~~  182 (279)
T 1nlf_A          176 FLHHASK  182 (279)
T ss_dssp             EEEEC--
T ss_pred             EEecCCC
Confidence            9999975

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=99.08  E-value=8.6e-13  Score=107.62  Aligned_cols=78  Identities=15%  Similarity=0.072  Sum_probs=67.0

Q ss_pred             HHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC----CHHHHHHHHHHHHHHHh-CCCeEEEEecC
Q psy8397          39 LDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGL----DSNSTNQCVAMLKALAR-GGRTIVCTIHQ  113 (203)
Q Consensus        39 L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gL----D~~~~~~i~~~l~~l~~-~g~tvi~~tH~  113 (203)
                      ++.+|+...+++++..||           +|+.+|++++|||||+|+    |+..++++++.++++.+ .|.|+|++||+
T Consensus       119 l~~~gl~~~~~~~~~~lS-----------~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHd  187 (207)
T 1znw_A          119 VDLAGARAIKKTMPEAVT-----------VFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRR  187 (207)
T ss_dssp             CCHHHHHHHHHHCTTSEE-----------EEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSS
T ss_pred             eCHHHHHHHHHhcCCcEE-----------EEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCC
Confidence            566677777788888888           999999999999999998    78899999999999975 49999999999


Q ss_pred             CCchhhhhhhccccC
Q psy8397         114 PSATIFEMVDHLGLD  128 (203)
Q Consensus       114 ~~~~~~~~~~~~~~~  128 (203)
                      +++ +.++|+++.++
T Consensus       188 l~~-~~~~~d~i~~l  201 (207)
T 1znw_A          188 LES-ACAELVSLLVG  201 (207)
T ss_dssp             HHH-HHHHHHHHHC-
T ss_pred             HHH-HHHHHHHHHHh
Confidence            875 67888888664

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=98.98  E-value=4.6e-10  Score=98.87  Aligned_cols=66  Identities=21%  Similarity=0.190  Sum_probs=55.3

Q ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCc
Q psy8397          57 GGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNS  131 (203)
Q Consensus        57 gGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~  131 (203)
                      |||+||++||+||..+|++|+|||||+       .++++.|+.+..++.|+|+|+|.++  ..+.|+|+.....+
T Consensus       225 gg~~~r~~la~aL~~~p~ilildE~~~-------~e~~~~l~~~~~g~~tvi~t~H~~~--~~~~~dri~~l~~g  290 (330)
T 2pt7_A          225 GNITSADCLKSCLRMRPDRIILGELRS-------SEAYDFYNVLCSGHKGTLTTLHAGS--SEEAFIRLANMSSS  290 (330)
T ss_dssp             TTBCHHHHHHHHTTSCCSEEEECCCCS-------THHHHHHHHHHTTCCCEEEEEECSS--HHHHHHHHHHHHHT
T ss_pred             CChhHHHHHHHHhhhCCCEEEEcCCCh-------HHHHHHHHHHhcCCCEEEEEEcccH--HHHHhhhheehhcC
Confidence            899999999999999999999999998       2467778887755568999999987  56788888764443

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=98.96  E-value=1.4e-09  Score=87.68  Aligned_cols=61  Identities=13%  Similarity=0.007  Sum_probs=52.4

Q ss_pred             CCCHHHHHHHHHHHHHhcCCC--EEEEeCCCCCC--CHHHHHHHHHHHHHHHh-CCCeEEEEecCC
Q psy8397          54 RLSGGQKKRLSIALELIDNPP--IMFLDEPTTGL--DSNSTNQCVAMLKALAR-GGRTIVCTIHQP  114 (203)
Q Consensus        54 ~LSgGqrqrl~iA~aL~~~P~--vLlLDEPt~gL--D~~~~~~i~~~l~~l~~-~g~tvi~~tH~~  114 (203)
                      ..|.++.++...+.+...+|+  ++++||||+++  |+..+..+++.|+++++ .|.|||+++|+.
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~  168 (235)
T 2w0m_A          103 NLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA  168 (235)
T ss_dssp             SCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred             CCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence            459999988888888888999  99999999877  99999999999999865 489999999986

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=98.93  E-value=5.6e-12  Score=110.70  Aligned_cols=87  Identities=16%  Similarity=0.182  Sum_probs=64.9

Q ss_pred             HHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecC
Q psy8397          34 LVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQ  113 (203)
Q Consensus        34 ~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~  113 (203)
                      .+.+.++.+ |....+  ...||||||||   ||||+.+|+|||    |++||+.+...+..              .||+
T Consensus       183 ~~~~~i~~~-L~~gld--g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~--------------ltH~  238 (305)
T 2v9p_A          183 ACWRYFDTY-LRNALD--GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY--------------LHSR  238 (305)
T ss_dssp             HHHHHHHHT-TTGGGG--TCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG--------------GTTT
T ss_pred             HHHHHHHHH-hHccCC--ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH--------------HhCC
Confidence            455666664 444444  77999999999   999999999999    99999988887752              1666


Q ss_pred             CCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccchhHHH
Q psy8397         114 PSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTIPYLQ  189 (203)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~~~~~  189 (203)
                      ++                                            ....||+| +|++|++++.|+++++...+.
T Consensus       239 ~~--------------------------------------------~~~~aD~i-vl~~G~iv~~g~~~el~~~y~  269 (305)
T 2v9p_A          239 VQ--------------------------------------------TFRFEQPC-TDESGEQPFNITDADWKSFFV  269 (305)
T ss_dssp             EE--------------------------------------------EEECCCCC-CCC---CCCCCCHHHHHHHHH
T ss_pred             HH--------------------------------------------HHHhCCEE-EEeCCEEEEeCCHHHHHHHHH
Confidence            43                                            24689999 999999999999988844443

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=98.87  E-value=1.9e-10  Score=106.61  Aligned_cols=55  Identities=16%  Similarity=0.103  Sum_probs=46.1

Q ss_pred             HHHHHHHHh-cCCCEEEEeCCCC-----CCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCc
Q psy8397          62 RLSIALELI-DNPPIMFLDEPTT-----GLDSNSTNQCVAMLKALARGGRTIVCTIHQPSA  116 (203)
Q Consensus        62 rl~iA~aL~-~~P~vLlLDEPt~-----gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~  116 (203)
                      .-.+..+|. .+|++++|||||+     +||+..++.++++++.+++.|+|||++||++++
T Consensus       127 ~~~~~~~LS~g~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~  187 (525)
T 1tf7_A          127 IERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEE  187 (525)
T ss_dssp             HHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSS
T ss_pred             HHHHHHHHHHcCCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCC
Confidence            344455553 6799999999997     469999999999999998889999999999864

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=98.83  E-value=2.6e-10  Score=99.52  Aligned_cols=66  Identities=20%  Similarity=0.235  Sum_probs=56.0

Q ss_pred             HHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecC
Q psy8397          38 ILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP--IMFLDEPTTGLDSNSTNQCVAMLKALAR-GGRTIVCTIHQ  113 (203)
Q Consensus        38 ~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~--vLlLDEPt~gLD~~~~~~i~~~l~~l~~-~g~tvi~~tH~  113 (203)
                      +++.+|+.+..++++.+||   |||++||++++.+|+  +|+|| ||+|||+..+      ++++.+ .|.|+|++||.
T Consensus       188 lldt~gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~------~~~~~~~~g~t~iiiThl  256 (302)
T 3b9q_A          188 LCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQ------AREFNEVVGITGLILTKL  256 (302)
T ss_dssp             EECCCCCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHH------HHHHHHHTCCCEEEEECC
T ss_pred             HHhcCCCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHH------HHHHHHhcCCCEEEEeCC
Confidence            4566788777788889999   999999999999999  99999 9999999755      345553 58999999994

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=98.80  E-value=1.7e-09  Score=105.67  Aligned_cols=63  Identities=13%  Similarity=0.038  Sum_probs=50.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHhC-CCeEEEEecCCC
Q psy8397          52 CGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQC-VAMLKALARG-GRTIVCTIHQPS  115 (203)
Q Consensus        52 v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i-~~~l~~l~~~-g~tvi~~tH~~~  115 (203)
                      .+.+|+||++ ++.+...+.+|+++|||||++|+|+.....+ +.+++.+.++ |.|+|++||+++
T Consensus       667 ~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~e  731 (800)
T 1wb9_A          667 RSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFE  731 (800)
T ss_dssp             ---CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGG
T ss_pred             hhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHH
Confidence            4467888765 4444556899999999999999999888775 7889999874 999999999975

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=98.78  E-value=3.9e-10  Score=100.96  Aligned_cols=66  Identities=20%  Similarity=0.240  Sum_probs=55.6

Q ss_pred             HHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecC
Q psy8397          38 ILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP--IMFLDEPTTGLDSNSTNQCVAMLKALAR-GGRTIVCTIHQ  113 (203)
Q Consensus        38 ~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~--vLlLDEPt~gLD~~~~~~i~~~l~~l~~-~g~tvi~~tH~  113 (203)
                      +++.+|+.+..++++.+||   |||++|||+++.+|+  +|+|| ||+|||+..+.      +.+.+ .|.|+|++||.
T Consensus       245 lldt~Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~------~~~~~~~g~t~iiiThl  313 (359)
T 2og2_A          245 LCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA------REFNEVVGITGLILTKL  313 (359)
T ss_dssp             EEECCCCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH------HHHHHHTCCCEEEEESC
T ss_pred             HHHhcCCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH------HHHHHhcCCeEEEEecC
Confidence            4566777777788888999   999999999999999  99999 99999998653      44554 48999999994

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=98.76  E-value=1.4e-10  Score=103.12  Aligned_cols=80  Identities=16%  Similarity=0.241  Sum_probs=65.8

Q ss_pred             ccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCC-----eEEEEecCCCchhhhhh
Q psy8397          50 TLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALAR--GGR-----TIVCTIHQPSATIFEMV  122 (203)
Q Consensus        50 ~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~--~g~-----tvi~~tH~~~~~~~~~~  122 (203)
                      ..+.+||+|| ||+++|   +.+|++      |+||||..+..++++++++.+  +|.     ||+++|||++       
T Consensus       167 d~~~~lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~-------  229 (347)
T 2obl_A          167 DSVTRYARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN-------  229 (347)
T ss_dssp             ETHHHHHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC-------
T ss_pred             hhHHHHHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC-------
Confidence            4678899999 899999   688877      999999999999999999874  365     6666666653       


Q ss_pred             hccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccc
Q psy8397         123 DHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANT  184 (203)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~  184 (203)
                                                            ..+||+++++.+|+++.+|+++++
T Consensus       230 --------------------------------------~~i~d~v~~i~dG~Ivl~~~l~~~  253 (347)
T 2obl_A          230 --------------------------------------DPIGDEVRSILDGHIVLTRELAEE  253 (347)
T ss_dssp             --------------------------------------CHHHHHHHHHCSEEEEBCHHHHTT
T ss_pred             --------------------------------------ChhhhheEEeeCcEEEEeCCHHHc
Confidence                                                  356888899999999998887764

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=98.69  E-value=3.8e-08  Score=79.05  Aligned_cols=65  Identities=11%  Similarity=0.088  Sum_probs=49.6

Q ss_pred             cCCCCCHHH--HHHHHHHHHHhcC-CCEEEEeCCCCCCCHHH--------HHHHHHHHHHHHhC-CCeEEEEecCCC
Q psy8397          51 LCGRLSGGQ--KKRLSIALELIDN-PPIMFLDEPTTGLDSNS--------TNQCVAMLKALARG-GRTIVCTIHQPS  115 (203)
Q Consensus        51 ~v~~LSgGq--rqrl~iA~aL~~~-P~vLlLDEPt~gLD~~~--------~~~i~~~l~~l~~~-g~tvi~~tH~~~  115 (203)
                      .+..+|+++  ++++..+++++.+ |+++++||||+++|+..        ...+++.|++++++ |.|||+++|...
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~  157 (220)
T 2cvh_A           81 ILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHF  157 (220)
T ss_dssp             EEECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             EEEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEE
Confidence            344566664  5688888899986 99999999999999743        24455667777655 899999999864

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=98.67  E-value=8.4e-10  Score=94.68  Aligned_cols=63  Identities=16%  Similarity=0.162  Sum_probs=53.2

Q ss_pred             cccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q psy8397          45 VLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPS  115 (203)
Q Consensus        45 ~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~  115 (203)
                      ....+..+.+||||||||+++|||++.   ++|||||+.|||+..    .++++.+.+. .+||++.|-.+
T Consensus        89 ~~~~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~~-~~vI~Vi~K~D  151 (270)
T 3sop_A           89 EQYEKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSKV-VNIIPVIAKAD  151 (270)
T ss_dssp             HHHHHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHTT-SEEEEEETTGG
T ss_pred             HHHHhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHhc-CcEEEEEeccc
Confidence            455677888999999999999999886   999999999999987    5566777666 89999988754

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=98.66  E-value=3.1e-08  Score=80.01  Aligned_cols=62  Identities=16%  Similarity=0.149  Sum_probs=45.0

Q ss_pred             CCCHHHH-HHHHHHHHHhc-------CCCEEEEeCCCCCCCHHH------------HHHHHHHHHHHHhC-CCeEEEEec
Q psy8397          54 RLSGGQK-KRLSIALELID-------NPPIMFLDEPTTGLDSNS------------TNQCVAMLKALARG-GRTIVCTIH  112 (203)
Q Consensus        54 ~LSgGqr-qrl~iA~aL~~-------~P~vLlLDEPt~gLD~~~------------~~~i~~~l~~l~~~-g~tvi~~tH  112 (203)
                      ..+++++ +.+..+.+++.       +|++++|||||+++|+..            ...+++.|+++.++ |.|||++||
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH  178 (231)
T 4a74_A           99 AFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQ  178 (231)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEE
T ss_pred             cCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEee
Confidence            3455554 34666666665       999999999999999841            23677777777654 899999999


Q ss_pred             CCC
Q psy8397         113 QPS  115 (203)
Q Consensus       113 ~~~  115 (203)
                      ...
T Consensus       179 ~~~  181 (231)
T 4a74_A          179 VQA  181 (231)
T ss_dssp             CC-
T ss_pred             ccc
Confidence            754

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=98.65  E-value=1.7e-08  Score=98.28  Aligned_cols=60  Identities=22%  Similarity=0.189  Sum_probs=52.2

Q ss_pred             CCCCHHHHHHHHHHHHH--hcCCCEEEEeCC---CCCCCHHHH-HHHHHHHHHHHhCCCeEEEEecCCC
Q psy8397          53 GRLSGGQKKRLSIALEL--IDNPPIMFLDEP---TTGLDSNST-NQCVAMLKALARGGRTIVCTIHQPS  115 (203)
Q Consensus        53 ~~LSgGqrqrl~iA~aL--~~~P~vLlLDEP---t~gLD~~~~-~~i~~~l~~l~~~g~tvi~~tH~~~  115 (203)
                      ..+|+|+++++.+|+++  +.+|+++|||||   |++||+.+. ..+++.|.+   .|.|+|++||+.+
T Consensus       634 ~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~---~g~~vl~~TH~~~  699 (765)
T 1ewq_A          634 GGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE---RRAYTLFATHYFE  699 (765)
T ss_dssp             -CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH---HTCEEEEECCCHH
T ss_pred             hcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh---CCCEEEEEeCCHH
Confidence            35899999999999999  999999999999   999999876 467777665   5899999999964

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=98.65  E-value=3.8e-10  Score=103.28  Aligned_cols=78  Identities=23%  Similarity=0.356  Sum_probs=62.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh---C-CC-----eEEEEecCCCchhhhhh
Q psy8397          52 CGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALAR---G-GR-----TIVCTIHQPSATIFEMV  122 (203)
Q Consensus        52 v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~---~-g~-----tvi~~tH~~~~~~~~~~  122 (203)
                      +..||+|| ||++||   +.+|++      |+|||+..+..+.+.+.++.+   + |.     ||+++||+++       
T Consensus       256 l~~lS~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~-------  318 (438)
T 2dpy_A          256 LTRYAMAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ-------  318 (438)
T ss_dssp             HHHHHHHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC-------
T ss_pred             HHHHHHHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc-------
Confidence            56799999 999999   889988      999999999999999998865   2 53     6666666653       


Q ss_pred             hccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccc
Q psy8397         123 DHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANT  184 (203)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~  184 (203)
                                                            ..+||+++++.+|+++.+|+++++
T Consensus       319 --------------------------------------~~iad~v~~l~dG~Ivl~~~~~~~  342 (438)
T 2dpy_A          319 --------------------------------------DPIADSARAILDGHIVLSRRLAEA  342 (438)
T ss_dssp             --------------------------------------CHHHHHHHHHSSEEEEECHHHHHT
T ss_pred             --------------------------------------chhhceEEEEeCcEEEEeCCHHHc
Confidence                                                  356788888888888888776654

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=98.50  E-value=8.6e-08  Score=76.41  Aligned_cols=72  Identities=13%  Similarity=0.039  Sum_probs=59.6

Q ss_pred             HHHHHHHHcCCccc-ccccCCCCCHHHHHH-HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q psy8397          34 LVDDILDTIGLVLS-KHTLCGRLSGGQKKR-LSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGR  105 (203)
Q Consensus        34 ~v~~~L~~~~L~~~-~~~~v~~LSgGqrqr-l~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~  105 (203)
                      .+.+++...++... ...++..+|+||+|+ +..+++++.+|+++++|||||++|+....++++.|.++..+|.
T Consensus       128 ~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~  201 (210)
T 1pui_A          128 QMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQ  201 (210)
T ss_dssp             HHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHcCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhcc
Confidence            45566777777644 467788999999999 8999999999999999999999999999999999998875543

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=98.49  E-value=8.1e-08  Score=85.01  Aligned_cols=60  Identities=20%  Similarity=0.134  Sum_probs=49.9

Q ss_pred             CHHHHHHHHHHHHHh-------cCCCEEEEeCCCCCCCHHH------------HHHHHHHHHHHHh-CCCeEEEEecCCC
Q psy8397          56 SGGQKKRLSIALELI-------DNPPIMFLDEPTTGLDSNS------------TNQCVAMLKALAR-GGRTIVCTIHQPS  115 (203)
Q Consensus        56 SgGqrqrl~iA~aL~-------~~P~vLlLDEPt~gLD~~~------------~~~i~~~l~~l~~-~g~tvi~~tH~~~  115 (203)
                      |.+++|++.++++++       .+|+++++||||+++|+..            ...++..|+++++ .|+|||+++|...
T Consensus       208 ~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~  287 (349)
T 1pzn_A          208 SNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA  287 (349)
T ss_dssp             HHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC-
T ss_pred             hHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccc
Confidence            688999999999999       6899999999999999852            3566666777665 4999999999864

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=98.48  E-value=1.9e-09  Score=94.45  Aligned_cols=84  Identities=8%  Similarity=-0.059  Sum_probs=61.7

Q ss_pred             HHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEec
Q psy8397          33 GLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH  112 (203)
Q Consensus        33 ~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH  112 (203)
                      +.+.++++.++ ....+.++..|||||+||+++|++++.+|+|||||||+..+|+..        ..+...=-..|+++|
T Consensus       156 ~~~~~~L~~l~-~~~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~--------~~l~~~~D~~I~V~a  226 (312)
T 3aez_A          156 RALMRFVTSVK-SGSDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT--------LMVSDLFDFSLYVDA  226 (312)
T ss_dssp             HHHHHHHHHHH-TTCSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS--------CCGGGGCSEEEEEEE
T ss_pred             HHHHHHHHHhC-CCcccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch--------HHHHHhcCcEEEEEC
Confidence            56778888888 555678889999999999999999999999999999999998521        012221124567777


Q ss_pred             CCCchhhhhhhcc
Q psy8397         113 QPSATIFEMVDHL  125 (203)
Q Consensus       113 ~~~~~~~~~~~~~  125 (203)
                      +.+.....+++|.
T Consensus       227 ~~~~~~~R~i~R~  239 (312)
T 3aez_A          227 RIEDIEQWYVSRF  239 (312)
T ss_dssp             CHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHH
Confidence            7655444455554

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=98.47  E-value=1e-10  Score=94.52  Aligned_cols=83  Identities=12%  Similarity=0.084  Sum_probs=72.5

Q ss_pred             HHHHHHHHHHcCCcccccccCCCCCHHHH----HHHHHHHHHhcCCCEEEEeCCCCC-------CCHHHHHHHHHHHHHH
Q psy8397          32 IGLVDDILDTIGLVLSKHTLCGRLSGGQK----KRLSIALELIDNPPIMFLDEPTTG-------LDSNSTNQCVAMLKAL  100 (203)
Q Consensus        32 ~~~v~~~L~~~~L~~~~~~~v~~LSgGqr----qrl~iA~aL~~~P~vLlLDEPt~g-------LD~~~~~~i~~~l~~l  100 (203)
                      .+++.+.++.+++.+..+.++..+|+|++    ||+++|++++.+|+++++||||++       ||+.....+.+.+++.
T Consensus        67 ~~~~~~~l~~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~  146 (211)
T 3asz_A           67 LALYLEHAQALLRGLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRD  146 (211)
T ss_dssp             HHHHHHHHHHHHTTCCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHH
Confidence            35677888888888888888999999974    688999999999999999999999       9999999999988875


Q ss_pred             -HhCCCeEEEEecCC
Q psy8397         101 -ARGGRTIVCTIHQP  114 (203)
Q Consensus       101 -~~~g~tvi~~tH~~  114 (203)
                       ...|.|++.++|+.
T Consensus       147 ~~~~g~t~~~~~~~~  161 (211)
T 3asz_A          147 VLERGRSLEGVVAQY  161 (211)
T ss_dssp             HHHSCCCHHHHHHHH
T ss_pred             HHHhCCCHHHHHHHH
Confidence             45699999999975

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=98.45  E-value=9.6e-10  Score=90.72  Aligned_cols=80  Identities=10%  Similarity=0.008  Sum_probs=63.4

Q ss_pred             HHHHHHHHHcCCcccccccCCCCCHHHHHHHHH-----HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-----
Q psy8397          33 GLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSI-----ALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALAR-----  102 (203)
Q Consensus        33 ~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~i-----A~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~-----  102 (203)
                      ..++++++...+. ..+   .+|||||+||++|     +++++.+|++++|||||+++|..+...+.+.+..+.+     
T Consensus       105 ~~i~~~l~~~~~~-il~---~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~~~~~~  180 (218)
T 1z6g_A          105 SEYDKAKEQNKIC-LFE---MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNIELHEA  180 (218)
T ss_dssp             HHHHHHHHTTCEE-EEE---ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCcE-EEE---ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhh
Confidence            3466677654432 122   5789999999999     8999999999999999999999988888888776543     


Q ss_pred             --CCCeEEEEecCCCc
Q psy8397         103 --GGRTIVCTIHQPSA  116 (203)
Q Consensus       103 --~g~tvi~~tH~~~~  116 (203)
                        .+.+.|+++|++++
T Consensus       181 h~~~~d~iiv~~~~~e  196 (218)
T 1z6g_A          181 NLLNFNLSIINDDLTL  196 (218)
T ss_dssp             TTSCCSEEEECSSHHH
T ss_pred             cccCCCEEEECCCHHH
Confidence              46788999998765

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=98.37  E-value=6.5e-07  Score=76.21  Aligned_cols=61  Identities=18%  Similarity=0.302  Sum_probs=49.8

Q ss_pred             HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCc
Q psy8397          62 RLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNS  131 (203)
Q Consensus        62 rl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~  131 (203)
                      |++||++|..+|+++++||||   |+.+...+   ++. ...|.+|++++|+.+  +...|+++.....+
T Consensus        88 ~~~la~aL~~~p~illlDEp~---D~~~~~~~---l~~-~~~g~~vl~t~H~~~--~~~~~dri~~l~~~  148 (261)
T 2eyu_A           88 ADALRAALREDPDVIFVGEMR---DLETVETA---LRA-AETGHLVFGTLHTNT--AIDTIHRIVDIFPL  148 (261)
T ss_dssp             HHHHHHHHHHCCSEEEESCCC---SHHHHHHH---HHH-HHTTCEEEEEECCSS--HHHHHHHHHHTSCG
T ss_pred             HHHHHHHHhhCCCEEEeCCCC---CHHHHHHH---HHH-HccCCEEEEEeCcch--HHHHHHHHhhhcCc
Confidence            899999999999999999999   98886544   333 356999999999977  46788888775443

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=98.28  E-value=2.5e-08  Score=81.31  Aligned_cols=56  Identities=11%  Similarity=0.032  Sum_probs=39.8

Q ss_pred             cccCCCCCHHHHHHH-HHHH---HHhcCCCEEEEeC--CCCCCCHHHHHHHHHHHHHHHhCCCeEE
Q psy8397          49 HTLCGRLSGGQKKRL-SIAL---ELIDNPPIMFLDE--PTTGLDSNSTNQCVAMLKALARGGRTIV  108 (203)
Q Consensus        49 ~~~v~~LSgGqrqrl-~iA~---aL~~~P~vLlLDE--Pt~gLD~~~~~~i~~~l~~l~~~g~tvi  108 (203)
                      .++...+|+|||+++ ++++   |++.+|++|||||  |+..+|+..    ++.|.++.++..++|
T Consensus        78 ~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~----~~~l~~~l~~~~~~i  139 (189)
T 2i3b_A           78 GQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLF----IQAVRQTLSTPGTII  139 (189)
T ss_dssp             SSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHH----HHHHHHHHHCSSCCE
T ss_pred             ceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHH----HHHHHHHHhCCCcEE
Confidence            444557999999888 4444   5799999999999  899999865    444455443444444

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=98.26  E-value=2.3e-06  Score=67.28  Aligned_cols=50  Identities=12%  Similarity=0.147  Sum_probs=44.2

Q ss_pred             HHhcCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCch
Q psy8397          68 ELIDNPPIMFLDEPTT-GLDSNSTNQCVAMLKALARGGRTIVCTIHQPSAT  117 (203)
Q Consensus        68 aL~~~P~vLlLDEPt~-gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~  117 (203)
                      ..+.+|++|+||||++ ++|+..+..+.+++.....+|+++|++||.+.++
T Consensus        96 ~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~~  146 (180)
T 3ec2_A           96 KTVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQR  146 (180)
T ss_dssp             HHHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSCC
T ss_pred             HHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChhH
Confidence            3456999999999985 9999999999999999888899999999998653

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=98.22  E-value=1.3e-08  Score=88.34  Aligned_cols=61  Identities=15%  Similarity=0.096  Sum_probs=50.8

Q ss_pred             cccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCC
Q psy8397          47 SKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTT-GLDSNSTNQCVAMLKALARG-GRTIVCTIHQPS  115 (203)
Q Consensus        47 ~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~-gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~  115 (203)
                      ..+.++.++|||||||+.+||+++    ++++||||+ |||+...    +.++++..+ +.++|+++||+.
T Consensus       106 ~~~~~~~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~  168 (301)
T 2qnr_A          106 QFERYLHDESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTL  168 (301)
T ss_dssp             HHHHHHHHHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred             HHHHHHHHhCHHhhhhhhhhhhhh----eeeeecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence            345788899999999999998886    999999998 5999873    566666654 889999999975

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=98.20  E-value=2e-06  Score=76.62  Aligned_cols=60  Identities=20%  Similarity=0.311  Sum_probs=48.6

Q ss_pred             HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCch
Q psy8397          64 SIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNST  132 (203)
Q Consensus        64 ~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~  132 (203)
                      +||++|.++|++|++||||   |...    ++.+.+++..|.||++|+|+.+..  +.|+|+..+-.+.
T Consensus       188 ~La~aL~~~PdvillDEp~---d~e~----~~~~~~~~~~G~~vl~t~H~~~~~--~~~dRli~l~~~~  247 (356)
T 3jvv_A          188 ALRSALREDPDIILVGEMR---DLET----IRLALTAAETGHLVFGTLHTTSAA--KTIDRVVDVFPAE  247 (356)
T ss_dssp             HHHHHTTSCCSEEEESCCC---SHHH----HHHHHHHHHTTCEEEEEESCSSHH--HHHHHHHHTSCHH
T ss_pred             HHHHHhhhCcCEEecCCCC---CHHH----HHHHHHHHhcCCEEEEEEccChHH--HHHHHHhhhcCcc
Confidence            9999999999999999999   6544    445555567899999999999853  7899997765443

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=98.04  E-value=1.5e-05  Score=64.63  Aligned_cols=62  Identities=19%  Similarity=0.259  Sum_probs=38.8

Q ss_pred             CCCHHHHHH-HHHHHHHh--cCCCEEEEeCCCCCCCHH-------H-----HHHHHHHHHHHHhC-CCeEEEEecCCC
Q psy8397          54 RLSGGQKKR-LSIALELI--DNPPIMFLDEPTTGLDSN-------S-----TNQCVAMLKALARG-GRTIVCTIHQPS  115 (203)
Q Consensus        54 ~LSgGqrqr-l~iA~aL~--~~P~vLlLDEPt~gLD~~-------~-----~~~i~~~l~~l~~~-g~tvi~~tH~~~  115 (203)
                      ..+..+... +.-+..++  .+|+++++|||++.+|+.       .     ...++..|++++++ |.|||+++|...
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~  175 (243)
T 1n0w_A           98 AFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVA  175 (243)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC----
T ss_pred             cCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeee
Confidence            456665433 33333343  589999999999999985       2     34566666666654 999999999864

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=98.01  E-value=7.7e-06  Score=63.70  Aligned_cols=47  Identities=6%  Similarity=0.154  Sum_probs=40.0

Q ss_pred             HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCe-EEEEecCCC
Q psy8397          68 ELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRT-IVCTIHQPS  115 (203)
Q Consensus        68 aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~t-vi~~tH~~~  115 (203)
                      +++.+|++|+||||++ +++..+..+++.+..+.++|++ +|++||...
T Consensus        79 ~~~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~~p  126 (149)
T 2kjq_A           79 DAAFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEYTP  126 (149)
T ss_dssp             GGGGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESSCT
T ss_pred             HHHhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCCCH
Confidence            4577899999999998 6666688899999998888888 999999654

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=97.95  E-value=1.6e-08  Score=80.31  Aligned_cols=80  Identities=14%  Similarity=0.194  Sum_probs=56.4

Q ss_pred             CHHHHHHHHHHH------HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecC-CCchhhhhhhccccC
Q psy8397          56 SGGQKKRLSIAL------ELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQ-PSATIFEMVDHLGLD  128 (203)
Q Consensus        56 SgGqrqrl~iA~------aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~-~~~~~~~~~~~~~~~  128 (203)
                      |+|++|++.++.      +++.+|+...+|+   ++|+..++. ++.+..+...+.++|.+||. ++             
T Consensus        96 s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~~~~~~ii~tsh~~~~-------------  158 (189)
T 2bdt_A           96 AKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKGIDERYFYNTSHLQPT-------------  158 (189)
T ss_dssp             HHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTTCCTTSEEECSSSCGG-------------
T ss_pred             hcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcCCCccEEEeCCCCChh-------------
Confidence            788888887787      8899998888884   899998888 88888876556777777776 54             


Q ss_pred             CCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccc
Q psy8397         129 SNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANT  184 (203)
Q Consensus       129 ~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~  184 (203)
                                                    .+.+.||+|+  ++|++++.|+++-+
T Consensus       159 ------------------------------~~e~~~~~i~--~~g~~~~~~~~~~~  182 (189)
T 2bdt_A          159 ------------------------------NLNDIVKNLK--TNPRFIFCMAGDPL  182 (189)
T ss_dssp             ------------------------------GHHHHHHHHH--HCGGGSCC------
T ss_pred             ------------------------------hHHHHHHHHh--hCCcEEEeecCCch
Confidence                                          3567788877  89999998887643

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=97.84  E-value=4.4e-07  Score=79.12  Aligned_cols=57  Identities=19%  Similarity=0.173  Sum_probs=44.0

Q ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCc
Q psy8397          55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSA  116 (203)
Q Consensus        55 LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~  116 (203)
                      ++...+||++|||+++.+|+.++|     +||+.+...+++.++.+.+. |.|+|++||+...
T Consensus       203 ~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~~~~~~~~~~~~~t~iivTh~d~~  260 (304)
T 1rj9_A          203 MEELKKVKRAIAKADPEEPKEVWL-----VLDAVTGQNGLEQAKKFHEAVGLTGVIVTKLDGT  260 (304)
T ss_dssp             HHHHHHHHHHHHHHCTTCCSEEEE-----EEETTBCTHHHHHHHHHHHHHCCSEEEEECTTSS
T ss_pred             HHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHHHHHHHHHHHcCCcEEEEECCccc
Confidence            455668999999999999995544     55555556677777887765 9999999998543

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=97.81  E-value=7.8e-07  Score=73.96  Aligned_cols=67  Identities=9%  Similarity=0.044  Sum_probs=51.3

Q ss_pred             HHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCC
Q psy8397          35 VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQP  114 (203)
Q Consensus        35 v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~  114 (203)
                      +.+.++.+  ....+.++..||+||+||+.+ ++++.+|+++|||||....+..    +    .++  .+.||+++||+.
T Consensus        99 ~~~~L~~l--~~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~----l----~~~--~~~~i~v~th~~  165 (245)
T 2jeo_A           99 MHRTLKNI--VEGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE----I----RDM--FHLRLFVDTDSD  165 (245)
T ss_dssp             HHHHHHHH--HTTCCEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH----H----HTT--CSEEEEEECCHH
T ss_pred             HHHHHHHH--HCCCCeecccccccccCccCc-eEEecCCCEEEEeCccccccHH----H----HHh--cCeEEEEECCHH
Confidence            34455543  455678899999999999988 5888999999999998888753    1    222  378999999973

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.80  E-value=4.5e-05  Score=65.54  Aligned_cols=72  Identities=10%  Similarity=0.120  Sum_probs=53.7

Q ss_pred             HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCch---hhhhhhccccCCCchhHHHHHHHHh
Q psy8397          69 LIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSAT---IFEMVDHLGLDSNSTNQCVAMLKAL  142 (203)
Q Consensus        69 L~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~  142 (203)
                      +..+|+++|+|||++ ||+.+...+++.+.+.. .+.++|++||++...   +...|..+-+..-+..+..+.++..
T Consensus       131 l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~-~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~  205 (354)
T 1sxj_E          131 LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS-KNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDV  205 (354)
T ss_dssp             ---CCEEEEEECTTS-SCHHHHHHHHHHHHHST-TTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHH
T ss_pred             cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc-CCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHH
Confidence            788999999999999 99999999999998853 478999999998653   3344545555666666777777654

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=97.76  E-value=6.2e-05  Score=71.13  Aligned_cols=78  Identities=15%  Similarity=0.262  Sum_probs=56.5

Q ss_pred             HHHHHHHhcCCCEEEEeCC------CCCCCHHHHHHHHHHHHHHHhC--CCeEEEEecCCCchhhhhhhccccCCCchhH
Q psy8397          63 LSIALELIDNPPIMFLDEP------TTGLDSNSTNQCVAMLKALARG--GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQ  134 (203)
Q Consensus        63 l~iA~aL~~~P~vLlLDEP------t~gLD~~~~~~i~~~l~~l~~~--g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~  134 (203)
                      +.++.+....|+++|+|||      |+|||+..+..+.++++++.++  +.++++++|+++.+              ...
T Consensus       137 i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a--------------~~~  202 (608)
T 3szr_A          137 ITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIA--------------TTE  202 (608)
T ss_dssp             EEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTT--------------TCH
T ss_pred             HHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhc--------------cHH
Confidence            3344445568999999999      9999999999999999997543  77899999997642              223


Q ss_pred             HHHHHHHhhh-CCceEEEeec
Q psy8397         135 CVAMLKALAR-GGRTIVCTIH  154 (203)
Q Consensus       135 ~~~~~~~~~~-~g~tvi~~~h  154 (203)
                      +...++.+.. .+.||+++++
T Consensus       203 ~l~la~~v~~~g~rtI~VlTK  223 (608)
T 3szr_A          203 ALSMAQEVDPEGDRTIGILTK  223 (608)
T ss_dssp             HHHHHHHHCSSCCSEEEEEEC
T ss_pred             HHHHHHHHhhcCCceEEEecc
Confidence            4445555533 4577777777

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=97.47  E-value=0.0007  Score=61.32  Aligned_cols=76  Identities=12%  Similarity=0.036  Sum_probs=52.4

Q ss_pred             HHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHh--cCCCEEEEeCCCCCCCH--------HHHHHHHHHHHHHHhC-
Q psy8397          35 VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELI--DNPPIMFLDEPTTGLDS--------NSTNQCVAMLKALARG-  103 (203)
Q Consensus        35 v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~--~~P~vLlLDEPt~gLD~--------~~~~~i~~~l~~l~~~-  103 (203)
                      +.+.++.++..+..-.....+|.++.+  +.++.++  ++|+++++|+++...++        .....+.+.|+.++++ 
T Consensus       276 ~~~a~~~l~~~~l~i~d~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~  353 (454)
T 2r6a_A          276 LTMAMGSLSNAGIYIDDTPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALAREL  353 (454)
T ss_dssp             HHHHHHHHHSSCEEEECCTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCEEEECCCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence            334444443333333335679999887  4566666  78999999999987743        3345677778888765 


Q ss_pred             CCeEEEEec
Q psy8397         104 GRTIVCTIH  112 (203)
Q Consensus       104 g~tvi~~tH  112 (203)
                      |.+||+++|
T Consensus       354 ~i~vi~~sq  362 (454)
T 2r6a_A          354 EVPVIALSQ  362 (454)
T ss_dssp             TCCEEEEEC
T ss_pred             CCeEEEEec
Confidence            999999999

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=97.41  E-value=1.2e-06  Score=72.54  Aligned_cols=50  Identities=20%  Similarity=0.289  Sum_probs=43.1

Q ss_pred             ccccccCCCCCHHHHHHHHHHHHH-hcCCCEEEEe----CCCCCCCHHHHHHHHHHHHHHHh
Q psy8397          46 LSKHTLCGRLSGGQKKRLSIALEL-IDNPPIMFLD----EPTTGLDSNSTNQCVAMLKALAR  102 (203)
Q Consensus        46 ~~~~~~v~~LSgGqrqrl~iA~aL-~~~P~vLlLD----EPt~gLD~~~~~~i~~~l~~l~~  102 (203)
                      ...++++..|||    |+   +++ +.+|++++||    |||+|||+.+...+.+.++.+.+
T Consensus       144 r~~~r~~~~lSg----rv---~al~~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~  198 (246)
T 2bbw_A          144 RLSRRWIHPPSG----RV---YNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKD  198 (246)
T ss_dssp             HHHTEEEETTTT----EE---EETTTSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHH
T ss_pred             HHHcCCCcCCCC----Cc---cccccCCCcccccccccccccccCCCCcHHHHHHHHHHHHH
Confidence            345777888999    55   677 9999999999    99999999999999999988764

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=97.38  E-value=1.1e-05  Score=70.08  Aligned_cols=63  Identities=10%  Similarity=0.078  Sum_probs=49.5

Q ss_pred             HHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q psy8397          40 DTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPS  115 (203)
Q Consensus        40 ~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~  115 (203)
                      ..+++....++.. ++|+||+||+..+++++.+|+++  |||         ..+.+.+++++ .+.||+++||.+.
T Consensus       128 ~~vd~~~~~~~~~-~ls~g~~Q~~~ad~ill~k~dl~--de~---------~~l~~~l~~l~-~~~~ii~~sh~~~  190 (318)
T 1nij_A          128 ALVDAVHADEQMN-QFTIAQSQVGYADRILLTKTDVA--GEA---------EKLHERLARIN-ARAPVYTVTHGDI  190 (318)
T ss_dssp             EEEETTTHHHHHH-HCHHHHHHHHTCSEEEEECTTTC--SCT---------HHHHHHHHHHC-SSSCEEECCSSCC
T ss_pred             EEEEHHHHHHHHh-hchHHHHHHHhCCEEEEECcccC--CHH---------HHHHHHHHHhC-CCCeEEEecccCC
Confidence            3445544444443 79999999999889999999987  998         67888888875 5899999999864

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=97.37  E-value=0.00039  Score=62.70  Aligned_cols=44  Identities=16%  Similarity=0.194  Sum_probs=34.3

Q ss_pred             cCCCEEEEeCCCCCCCHHHH------------HHHHHHHHHHHhC-CCeEEEEecCC
Q psy8397          71 DNPPIMFLDEPTTGLDSNST------------NQCVAMLKALARG-GRTIVCTIHQP  114 (203)
Q Consensus        71 ~~P~vLlLDEPt~gLD~~~~------------~~i~~~l~~l~~~-g~tvi~~tH~~  114 (203)
                      .+|+++++|||++.+|+...            ..+++.|++++++ |.|||+++|..
T Consensus       272 ~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~  328 (400)
T 3lda_A          272 SRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVV  328 (400)
T ss_dssp             SCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC-
T ss_pred             cCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeec
Confidence            57999999999999986432            5677888888765 99999999984

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=97.28  E-value=4.3e-05  Score=67.21  Aligned_cols=64  Identities=11%  Similarity=-0.102  Sum_probs=48.9

Q ss_pred             ccCCCCCHHHHHHHHHHHHHh-cCCCEEEEeC---CC------CCCCHHHHHHHHHHHHHHHhC-CCeEEEEecC
Q psy8397          50 TLCGRLSGGQKKRLSIALELI-DNPPIMFLDE---PT------TGLDSNSTNQCVAMLKALARG-GRTIVCTIHQ  113 (203)
Q Consensus        50 ~~v~~LSgGqrqrl~iA~aL~-~~P~vLlLDE---Pt------~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~  113 (203)
                      +.+..+|+|++++..+++++. .+|+++||||   |+      .++|+..+..+.+.|+++.++ |.+|++++|.
T Consensus       254 ~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~  328 (365)
T 1lw7_A          254 TQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP  328 (365)
T ss_dssp             HHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS
T ss_pred             HHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC
Confidence            344457788888888888774 6999999999   65      589999999999999987654 8999999975

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.27  E-value=3.3e-05  Score=70.24  Aligned_cols=57  Identities=12%  Similarity=0.216  Sum_probs=42.8

Q ss_pred             CCCHHHHHHHHHHHHHhcCCC---EEEEeCCC-CCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q psy8397          54 RLSGGQKKRLSIALELIDNPP---IMFLDEPT-TGLDSNSTNQCVAMLKALARGGRTIVCTIHQPS  115 (203)
Q Consensus        54 ~LSgGqrqrl~iA~aL~~~P~---vLlLDEPt-~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~  115 (203)
                      .++.+++||++|||+++.+|+   +|++|||| .|||+...    +.++.+. .+.++|++.|-.+
T Consensus       118 ~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~-~~v~iIlVinK~D  178 (418)
T 2qag_C          118 KFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI----EFMKRLH-EKVNIIPLIAKAD  178 (418)
T ss_dssp             HHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH----HHHHHHT-TTSEEEEEEESTT
T ss_pred             HHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHH----HHHHHHh-ccCcEEEEEEccc
Confidence            356778889999999999999   99999999 69998773    4455554 4788888888754

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=97.26  E-value=0.0004  Score=61.71  Aligned_cols=58  Identities=19%  Similarity=0.347  Sum_probs=45.3

Q ss_pred             HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccC
Q psy8397          62 RLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLD  128 (203)
Q Consensus        62 rl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~  128 (203)
                      +.+|+++|..+|+++++|||+   |+....   ..++. ...|.+|+.|+|..+  +.+.|+|+...
T Consensus       199 ~~~l~~~L~~~pd~illdE~~---d~e~~~---~~l~~-~~~g~~vi~t~H~~~--~~~~~~rl~~l  256 (372)
T 2ewv_A          199 ADALRAALREDPDVIFVGEMR---DLETVE---TALRA-AETGHLVFGTLHTNT--AIDTIHRIVDI  256 (372)
T ss_dssp             HHHHHHHTTSCCSEEEESCCC---SHHHHH---HHHHH-HTTTCEEEECCCCCS--HHHHHHHHHHT
T ss_pred             HHHHHHHhhhCcCEEEECCCC---CHHHHH---HHHHH-HhcCCEEEEEECcch--HHHHHHHHHHh
Confidence            468999999999999999999   766533   34444 356999999999966  56788887553

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=97.26  E-value=8e-05  Score=67.62  Aligned_cols=71  Identities=18%  Similarity=0.173  Sum_probs=53.7

Q ss_pred             HHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH-HHhCCCeEEEEecCC
Q psy8397          36 DDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKA-LARGGRTIVCTIHQP  114 (203)
Q Consensus        36 ~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~-l~~~g~tvi~~tH~~  114 (203)
                      +.++..+++.   +.++.+||+|++|++.+|++|+..|.++++    +++|+... ..++.+++ +...|.+++++|---
T Consensus       237 ~~lL~vvDls---~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~-~~~~~l~~~l~~~g~~vi~iSA~~  308 (416)
T 1udx_A          237 RVLLYVLDAA---DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE-EAVKALADALAREGLAVLPVSALT  308 (416)
T ss_dssp             SEEEEEEETT---SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH-HHHHHHHHHHHTTTSCEEECCTTT
T ss_pred             HhhhEEeCCc---cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH-HHHHHHHHHHHhcCCeEEEEECCC
Confidence            3344445554   567788999999999999999999999999    99999877 44554444 445588888777543

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=97.00  E-value=0.0019  Score=57.06  Aligned_cols=116  Identities=18%  Similarity=0.171  Sum_probs=75.3

Q ss_pred             ccCCCCHhHHHhHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q psy8397          19 YSHRISVDDILDTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLK   98 (203)
Q Consensus        19 ~~~~~~~~~~~~~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~   98 (203)
                      |+..++..++   ..|+......+++....+   +.||.++.+|+..|...+.++++++.|+|...     ...+...++
T Consensus        80 fSlEms~~ql---~~Rlls~~~~v~~~~l~~---g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s-----i~~i~~~ir  148 (338)
T 4a1f_A           80 FSLEMSAEQL---ALRALSDLTSINMHDLES---GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVR-----IEQIRLQLR  148 (338)
T ss_dssp             EESSSCHHHH---HHHHHHHHHCCCHHHHHH---TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCC-----HHHHHHHHH
T ss_pred             EeCCCCHHHH---HHHHHHHhhCCCHHHHhc---CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCc-----HHHHHHHHH
Confidence            3445676654   233333334444443332   57999999999999999999999999998654     336666677


Q ss_pred             HHHhC--CCeEEEEecCCCchhhhhhhccccCCC------chh---HHHHHHHHh-hhCCceEEEeecCch
Q psy8397          99 ALARG--GRTIVCTIHQPSATIFEMVDHLGLDSN------STN---QCVAMLKAL-ARGGRTIVCTIHQPS  157 (203)
Q Consensus        99 ~l~~~--g~tvi~~tH~~~~~~~~~~~~~~~~~~------~~~---~~~~~~~~~-~~~g~tvi~~~h~~~  157 (203)
                      .+.++  |..+|++-|--            ++..      ...   .....|+.+ ++.+.+|++++|--.
T Consensus       149 ~l~~~~gg~~lIVIDyLq------------lm~~~~~~~~r~~ei~~isr~LK~lAkel~vpVi~lsQl~R  207 (338)
T 4a1f_A          149 KLKSQHKELGIAFIDYLQ------------LMSGSKATKERHEQIAEISRELKTLARELEIPIIALVQLNR  207 (338)
T ss_dssp             HHHHHCTTEEEEEEEEEE------------CCCTHHHHHHCCCCHHHHHHHHHHHHHHHTSCEEEEEECCG
T ss_pred             HHHHhcCCCCEEEEechH------------HhcCCCCCCChHHHHHHHHHHHHHHHHHcCCeEEEEEecCc
Confidence            76643  68888876532            2111      112   334556666 556999999999643

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=96.97  E-value=2.7e-05  Score=67.24  Aligned_cols=40  Identities=13%  Similarity=0.048  Sum_probs=32.6

Q ss_pred             cccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Q psy8397          49 HTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSN   88 (203)
Q Consensus        49 ~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~   88 (203)
                      ..+-..+||||+||+.+|++...+|+|||+|||++++|+.
T Consensus       129 p~y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~  168 (290)
T 1odf_A          129 PKYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPI  168 (290)
T ss_dssp             CCEETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCC
T ss_pred             ccCccccCCccccccccccceEcCCCEEEEeCccccCCcc
Confidence            3445689999999999873333399999999999999985

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=96.68  E-value=0.0071  Score=48.59  Aligned_cols=45  Identities=20%  Similarity=0.135  Sum_probs=34.4

Q ss_pred             cCCCEEEEeCCCCCC--CHHHHHHHHHHHHHH-HhCCCeEEEEecCCC
Q psy8397          71 DNPPIMFLDEPTTGL--DSNSTNQCVAMLKAL-ARGGRTIVCTIHQPS  115 (203)
Q Consensus        71 ~~P~vLlLDEPt~gL--D~~~~~~i~~~l~~l-~~~g~tvi~~tH~~~  115 (203)
                      .+|+++++|+|++.+  |+....+++..+.++ ++.|.|||+++|...
T Consensus       127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~  174 (247)
T 2dr3_A          127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSV  174 (247)
T ss_dssp             HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC-
T ss_pred             hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence            589999999999987  665556666555555 456999999999864

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=96.58  E-value=0.00014  Score=57.06  Aligned_cols=56  Identities=7%  Similarity=-0.129  Sum_probs=43.2

Q ss_pred             cccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEec
Q psy8397          49 HTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH  112 (203)
Q Consensus        49 ~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH  112 (203)
                      +.++..+|+|++|++.++|++..+|+++        +|+...+.+++.++.+...+..+|.+++
T Consensus       104 ~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~l~~~~~~~i~t~~  159 (191)
T 1zp6_A          104 ARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQFADLGAFEHHVLPVSG  159 (191)
T ss_dssp             CSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHTTCCGGGGGGEEECTT
T ss_pred             CCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHHhccCcccccEEECCC
Confidence            4456679999999999999999999876        6888888888887776543444555543

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=96.55  E-value=0.019  Score=49.43  Aligned_cols=137  Identities=15%  Similarity=0.087  Sum_probs=82.3

Q ss_pred             cCCCCHhHHHhHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy8397          20 SHRISVDDILDTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKA   99 (203)
Q Consensus        20 ~~~~~~~~~~~~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~   99 (203)
                      +..++..++   ..++......+++....+.. ..||.++++|+..|...+.++++++.|+|...     ...+...+++
T Consensus       103 slE~s~~~l---~~R~~~~~~~i~~~~l~~~~-~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~-----~~~i~~~i~~  173 (315)
T 3bh0_A          103 SLEMGKKEN---IKRLIVTAGSINAQKIKAAR-RDFASEDWGKLSMAIGEISNSNINIFDKAGQS-----VNYIWSKTRQ  173 (315)
T ss_dssp             ESSSCHHHH---HHHHHHHHTTCCHHHHHSCH-HHHCSSCHHHHHHHHHHHHTSCEEEECCSCCB-----HHHHHHHHHH
T ss_pred             ECCCCHHHH---HHHHHHHHcCCCHHHHhcCC-CCCCHHHHHHHHHHHHHHhCCCEEEECCCCCC-----HHHHHHHHHH
Confidence            344666554   23333333334433332211 22899999999999999999999999998643     3456667777


Q ss_pred             HHhC-CCe--EEEEecCCCchhhhhhhccccCCCchhHHHH---HHHHh-hhCCceEEEeecCch---------------
Q psy8397         100 LARG-GRT--IVCTIHQPSATIFEMVDHLGLDSNSTNQCVA---MLKAL-ARGGRTIVCTIHQPS---------------  157 (203)
Q Consensus       100 l~~~-g~t--vi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~g~tvi~~~h~~~---------------  157 (203)
                      +.++ |..  +|++-|--.      ...-.-..+...++..   .|+.+ ++.+.+|++++|...               
T Consensus       174 l~~~~~~~~~lVVID~l~~------l~~~~~~~~r~~~i~~~~~~Lk~lAk~~~i~vi~lsql~r~~e~r~~~~p~l~dl  247 (315)
T 3bh0_A          174 TKRKNPGKRVIVMIDYLQL------LEPAKANDSRTNQISQISRDLKKMARELDVVVIALSQLSRQVEQRQDKRPMLSDL  247 (315)
T ss_dssp             HHHTSSSCCEEEEEECGGG------SBCSCTTSCHHHHHHHHHHHHHHHHHHHTCEEEEEECCCGGGTTSSSCCCCGGGG
T ss_pred             HHHhcCCCCeEEEEeCchh------cCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEeecCcccccCCCCCCCHHHh
Confidence            7655 777  888876421      1000000111233333   34444 566999999999531               


Q ss_pred             ---hHHHhhcCEEEEEe
Q psy8397         158 ---ATIFEMVDHLYVIA  171 (203)
Q Consensus       158 ---~~i~~~~d~v~vl~  171 (203)
                         ..+...+|-|+++.
T Consensus       248 r~sg~ie~~aD~vi~L~  264 (315)
T 3bh0_A          248 RESGQLEQDADIIEFLY  264 (315)
T ss_dssp             TTTSHHHHHCSEEEEEE
T ss_pred             hhhhhhHhhCCEEEEEe
Confidence               12567889988886

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=96.53  E-value=0.01  Score=52.22  Aligned_cols=54  Identities=20%  Similarity=0.226  Sum_probs=37.9

Q ss_pred             HHHHHHHHHhcC--CCEEEEeCCCCCC----------CH---HHHHHHHHHHHHH----HhCCCeEEEEecCC
Q psy8397          61 KRLSIALELIDN--PPIMFLDEPTTGL----------DS---NSTNQCVAMLKAL----ARGGRTIVCTIHQP  114 (203)
Q Consensus        61 qrl~iA~aL~~~--P~vLlLDEPt~gL----------D~---~~~~~i~~~l~~l----~~~g~tvi~~tH~~  114 (203)
                      +-+.++++++.+  |+++++|||++.+          |+   ...+.+.+.+++|    .+.|+|||+++|..
T Consensus       126 ~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~  198 (349)
T 2zr9_A          126 QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELR  198 (349)
T ss_dssp             HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC
T ss_pred             HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccc
Confidence            456778888755  9999999999988          33   2223455555555    34599999999975

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*

Probab=96.16  E-value=0.0014  Score=63.54  Aligned_cols=73  Identities=11%  Similarity=0.095  Sum_probs=56.3

Q ss_pred             ccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCeEEEE-ecCCCchhhhhhh
Q psy8397          50 TLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTT-GLDSNSTNQCVAMLKALARGGRTIVCT-IHQPSATIFEMVD  123 (203)
Q Consensus        50 ~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~-gLD~~~~~~i~~~l~~l~~~g~tvi~~-tH~~~~~~~~~~~  123 (203)
                      ..+.-+|.|+.+|..++..++.+++++++|||.. +||......+++.+.....+..+|+++ ||+.+ .+.+.++
T Consensus       186 ~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~-~l~~~~~  260 (773)
T 2xau_A          186 TILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAE-KFQRYFN  260 (773)
T ss_dssp             CSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCH-HHHHHTT
T ss_pred             CCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHH-HHHHHhc
Confidence            3445689999999999999999999999999996 999887777777666655556788885 89754 3344444

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=96.01  E-value=0.00016  Score=57.73  Aligned_cols=50  Identities=16%  Similarity=0.237  Sum_probs=35.8

Q ss_pred             CCCHHHHHHHHHHHHHhcCCCEE-------EEeCCCCC---CCHHHHHHHHHHHHHHHhC
Q psy8397          54 RLSGGQKKRLSIALELIDNPPIM-------FLDEPTTG---LDSNSTNQCVAMLKALARG  103 (203)
Q Consensus        54 ~LSgGqrqrl~iA~aL~~~P~vL-------lLDEPt~g---LD~~~~~~i~~~l~~l~~~  103 (203)
                      .|||||+||++|||+++.+|++.       .=|.|..+   +|......+.+.+.+..++
T Consensus       103 glSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~~~~~~f~~~~~~~~a~~i~~~~~~  162 (171)
T 2f1r_A          103 GFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERVDGHKWFRRDEVERIAEFILSLLRE  162 (171)
T ss_dssp             SCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCCSSSCEECTTCHHHHHHHHHHHHTC
T ss_pred             CcCCCCCcEEEEEecccCCCccCccceEEEEecCCcccCcccCcccHHHHHHHHHHHHhc
Confidence            49999999999999999999873       22444322   3455667777777665544

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=95.99  E-value=0.00016  Score=67.43  Aligned_cols=100  Identities=12%  Similarity=0.131  Sum_probs=62.6

Q ss_pred             HHHHHcCCcccccc---cCCCCCHHHHHHH----------HHHHHHhcCCC-EEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q psy8397          37 DILDTIGLVLSKHT---LCGRLSGGQKKRL----------SIALELIDNPP-IMFLDEPTTGLDSNSTNQCVAMLKALAR  102 (203)
Q Consensus        37 ~~L~~~~L~~~~~~---~v~~LSgGqrqrl----------~iA~aL~~~P~-vLlLDEPt~gLD~~~~~~i~~~l~~l~~  102 (203)
                      +++...|+.+..+.   ....+|+||+|+.          .+++++...|. ++++||++.-++. ....+.+.+..+.+
T Consensus       248 ~ll~~~Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~~-~~~~~~~~l~~Lar  326 (512)
T 2ius_A          248 KLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMT-VGKKVEELIARLAQ  326 (512)
T ss_dssp             HHHHHTTCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHHHHH-HHHHHHHHHHHHHH
T ss_pred             HHHHHcCCccHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCcEEEEEeCHHHHHhh-hhHHHHHHHHHHHH
Confidence            56777887654332   1235788887652          34566777898 8999999988873 33456666665543


Q ss_pred             ---C-CCeEEEEecCCCc------hhhhhhhccccCCCchhHHHH
Q psy8397         103 ---G-GRTIVCTIHQPSA------TIFEMVDHLGLDSNSTNQCVA  137 (203)
Q Consensus       103 ---~-g~tvi~~tH~~~~------~~~~~~~~~~~~~~~~~~~~~  137 (203)
                         . |.++|++||.++.      ...++..||.+--.+......
T Consensus       327 ~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~lrv~s~~dsr~  371 (512)
T 2ius_A          327 KARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRT  371 (512)
T ss_dssp             HCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEECCSSHHHHHH
T ss_pred             HhhhCCcEEEEEecCCccccccHHHHhhcCCeEEEEcCCHHHHHH
Confidence               3 7899999999983      123455566554333333333

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=95.96  E-value=0.0099  Score=54.74  Aligned_cols=59  Identities=20%  Similarity=0.331  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCC----------CCCCCHHHHHHHHHHHHHHH----hCCCeEEEEecCCC
Q psy8397          57 GGQKKRLSIALELIDNPPIMFLDEP----------TTGLDSNSTNQCVAMLKALA----RGGRTIVCTIHQPS  115 (203)
Q Consensus        57 gGqrqrl~iA~aL~~~P~vLlLDEP----------t~gLD~~~~~~i~~~l~~l~----~~g~tvi~~tH~~~  115 (203)
                      |+++.|-.+++|....|.+||+||+          +.|.|+...+.+.+++..+.    ..+..||.+||.++
T Consensus        93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~  165 (476)
T 2ce7_A           93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPD  165 (476)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGG
T ss_pred             cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChh
Confidence            6788899999999999999999999          34677777777777777764    34778999999974

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=95.70  E-value=0.015  Score=47.74  Aligned_cols=61  Identities=15%  Similarity=0.121  Sum_probs=44.7

Q ss_pred             HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCC--CchhHHHHHHH
Q psy8397          66 ALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDS--NSTNQCVAMLK  140 (203)
Q Consensus        66 A~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  140 (203)
                      +..++..++++|||     ||+.++..+++.+.    +|.||+++||++++.    ..|+ +.+  +++.++...+.
T Consensus       101 v~~~l~~G~illLD-----LD~~~~~~i~~~l~----~~~tI~i~th~~~~l----~~Rl-~~rG~~~~e~i~~rl~  163 (219)
T 1s96_A          101 IEQVLATGVDVFLD-----IDWQGAQQIRQKMP----HARSIFILPPSKIEL----DRRL-RGRGQDSEEVIAKRMA  163 (219)
T ss_dssp             HHHHHTTTCEEEEE-----CCHHHHHHHHHHCT----TCEEEEEECSSHHHH----HHHH-HTTSCSCHHHHHHHHH
T ss_pred             HHHHHhcCCeEEEE-----ECHHHHHHHHHHcc----CCEEEEEECCCHHHH----HHHH-HHcCCCCHHHHHHHHH
Confidence            44566779999999     99999999998776    589999999997653    2343 333  34555555554

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=95.55  E-value=0.025  Score=52.27  Aligned_cols=58  Identities=21%  Similarity=0.311  Sum_probs=43.9

Q ss_pred             cCCCCCHHHHHHHHHHHHH--hc---------------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEec
Q psy8397          51 LCGRLSGGQKKRLSIALEL--ID---------------NPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH  112 (203)
Q Consensus        51 ~v~~LSgGqrqrl~iA~aL--~~---------------~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH  112 (203)
                      ..+.+||||+|-.-+|.+.  ++               .=.+++|||. +-+|....+.++++++++   |.-+|+++=
T Consensus       376 ~~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l---glQliiatP  450 (483)
T 3euj_A          376 ESSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL---DMQLLIAAP  450 (483)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT---TCEEEEEES
T ss_pred             ccCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc---CCEEEEECc
Confidence            4678999999965444432  22               1247999999 999999999999999865   566777774

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=95.47  E-value=0.026  Score=49.19  Aligned_cols=66  Identities=12%  Similarity=0.101  Sum_probs=51.7

Q ss_pred             ccccCCCCCHHHHHHHHHHHHHhcCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEe--cCCC
Q psy8397          48 KHTLCGRLSGGQKKRLSIALELIDNPPIMFLD-EPTTGLDSNSTNQCVAMLKALARGGRTIVCTI--HQPS  115 (203)
Q Consensus        48 ~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLD-EPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~t--H~~~  115 (203)
                      .+.++..+|+|++|.+. +.+...++-++++| +|+.|+|......+++.+..... +..+|++.  ||+.
T Consensus       225 ~~~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~  293 (357)
T 2e87_A          225 LDRPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVA  293 (357)
T ss_dssp             SSSCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTC
T ss_pred             cccchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccC
Confidence            34566789999998876 55555677789999 99999999998888887776543 77777777  8875

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=95.36  E-value=2.6e-05  Score=70.45  Aligned_cols=51  Identities=12%  Similarity=0.271  Sum_probs=40.6

Q ss_pred             CC--CEEEEeCCCCCCCHHHHHHHHHHHHHH-HhCCCeEEEEecCCCchhhhhhhcc
Q psy8397          72 NP--PIMFLDEPTTGLDSNSTNQCVAMLKAL-ARGGRTIVCTIHQPSATIFEMVDHL  125 (203)
Q Consensus        72 ~P--~vLlLDEPt~gLD~~~~~~i~~~l~~l-~~~g~tvi~~tH~~~~~~~~~~~~~  125 (203)
                      +|  +++++|||+.++|+....+.++.++.+ .+.|.|++  +|.+.+ +.++|+++
T Consensus       139 dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~~-~~~l~~~i  192 (392)
T 1ni3_A          139 DPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKKE-EQAIIEKV  192 (392)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHHH-HHHHHHHH
T ss_pred             CcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHHH-HHHHHHHH
Confidence            89  999999999999999999999999998 66677764  887643 34444444

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=95.13  E-value=0.0011  Score=53.23  Aligned_cols=27  Identities=15%  Similarity=0.047  Sum_probs=22.2

Q ss_pred             hCCceEEEeecCchhHHHhhcCEEEEEe
Q psy8397         144 RGGRTIVCTIHQPSATIFEMVDHLYVIA  171 (203)
Q Consensus       144 ~~g~tvi~~~h~~~~~i~~~~d~v~vl~  171 (203)
                      ..|.|+++++|+++ ++..+||+++++.
T Consensus       176 ~~g~tvi~vtHdl~-~~~~~~d~i~~l~  202 (207)
T 1znw_A          176 QGDFDKVVVNRRLE-SACAELVSLLVGT  202 (207)
T ss_dssp             GGGSSEEEECSSHH-HHHHHHHHHHC--
T ss_pred             hccCcEEEECCCHH-HHHHHHHHHHHhc
Confidence            45899999999998 5889999999874

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=95.02  E-value=0.022  Score=49.28  Aligned_cols=59  Identities=12%  Similarity=0.234  Sum_probs=42.4

Q ss_pred             HHHHHHHcCCcccccccCCCCCHHHHHHH---HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q psy8397          35 VDDILDTIGLVLSKHTLCGRLSGGQKKRL---SIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALA  101 (203)
Q Consensus        35 v~~~L~~~~L~~~~~~~v~~LSgGqrqrl---~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~  101 (203)
                      +..+++.+++..     +..+|+|+.+++   ++++++..+|+++|+|||..   ......+++.++++.
T Consensus       151 L~~~~~~~gl~~-----~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~l~~eL~~l~  212 (306)
T 1vma_A          151 LKIWGERVGATV-----ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTKKNLMEELRKVH  212 (306)
T ss_dssp             HHHHHHHHTCEE-----ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCcE-----EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhHHHHHHHHHHHH
Confidence            345666677653     345789999999   89999999999999999974   334445555555543

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=94.51  E-value=0.019  Score=50.14  Aligned_cols=29  Identities=31%  Similarity=0.523  Sum_probs=22.7

Q ss_pred             CCCHHHHHHHHHHHHH---hc--CCCEEEEeCCC
Q psy8397          54 RLSGGQKKRLSIALEL---ID--NPPIMFLDEPT   82 (203)
Q Consensus        54 ~LSgGqrqrl~iA~aL---~~--~P~vLlLDEPt   82 (203)
                      .+|+|++||..++++|   ..  +++++++|||+
T Consensus       296 ~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~  329 (365)
T 1lw7_A          296 RSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPS  329 (365)
T ss_dssp             -----CCSHHHHHHHHHHHHHGGGCCCEEEECSS
T ss_pred             cCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence            5899999999999999   76  89999999997

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=94.47  E-value=0.05  Score=49.00  Aligned_cols=45  Identities=13%  Similarity=0.242  Sum_probs=38.4

Q ss_pred             cCCCEEEEeCCCCCCCH-HHHHHHHHHHHHHHhCCCeEEEEecCCC
Q psy8397          71 DNPPIMFLDEPTTGLDS-NSTNQCVAMLKALARGGRTIVCTIHQPS  115 (203)
Q Consensus        71 ~~P~vLlLDEPt~gLD~-~~~~~i~~~l~~l~~~g~tvi~~tH~~~  115 (203)
                      .+|++||+||+..-.+. ..+..++..+..+...|..||++||.+.
T Consensus       193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~  238 (440)
T 2z4s_A          193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREP  238 (440)
T ss_dssp             TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCG
T ss_pred             CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCH
Confidence            38999999999876664 6778899999998888999999999854

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=94.17  E-value=0.1  Score=44.59  Aligned_cols=62  Identities=10%  Similarity=0.122  Sum_probs=44.9

Q ss_pred             HHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC-CCCCCHHHHHHHHHHHHHHH
Q psy8397          38 ILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEP-TTGLDSNSTNQCVAMLKALA  101 (203)
Q Consensus        38 ~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEP-t~gLD~~~~~~i~~~l~~l~  101 (203)
                      +.+..++.-.....  ..+-.+.+|.+++.+...+++++|+||| +.++|......+.+..+.+.
T Consensus       148 ~~~~~~l~~~~~~~--~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~  210 (295)
T 1ls1_A          148 LGEKVGVPVLEVMD--GESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLG  210 (295)
T ss_dssp             HHHHHTCCEEECCT--TCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHC
T ss_pred             hcccCCeEEEEcCC--CCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhcC
Confidence            44555664332111  2344556788999988899999999999 99999988888888777654

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=92.79  E-value=0.047  Score=48.51  Aligned_cols=38  Identities=11%  Similarity=-0.027  Sum_probs=33.4

Q ss_pred             HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHH
Q psy8397          31 TIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALEL   69 (203)
Q Consensus        31 ~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL   69 (203)
                      ..+++.++++.+|+.++.+.++.+|| ||+||++||+++
T Consensus       291 ~~~~~~e~l~~~gl~~f~~~~~~~lS-G~~~r~ala~gl  328 (358)
T 2rcn_A          291 ITQGFVEFHDYLGHCKYRDCKHDADP-GCAIREAVENGA  328 (358)
T ss_dssp             HHHTSGGGGGGTTCSSSTTCCSSSCT-TCHHHHHHHHTS
T ss_pred             HHHHHHHHHHHcCCchhcCCCcccCC-HHHHHHHHHhcC
Confidence            34567788999999999999999999 999999999764

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=92.46  E-value=0.039  Score=47.35  Aligned_cols=35  Identities=14%  Similarity=0.163  Sum_probs=25.4

Q ss_pred             HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy8397          61 KRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKA   99 (203)
Q Consensus        61 qrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~   99 (203)
                      -+.+++  .+.+|+++|+|  |+|+|+.....+.++.+-
T Consensus       173 l~~al~--~~~~~dlvIiD--T~G~~~~~~~~~~el~~~  207 (296)
T 2px0_A          173 FQQAKE--LFSEYDHVFVD--TAGRNFKDPQYIDELKET  207 (296)
T ss_dssp             HHHHHH--HGGGSSEEEEE--CCCCCTTSHHHHHHHHHH
T ss_pred             HHHHHH--HhcCCCEEEEe--CCCCChhhHHHHHHHHHH
Confidence            345555  45999999999  999998877666554443

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=92.18  E-value=0.14  Score=44.89  Aligned_cols=63  Identities=16%  Similarity=0.138  Sum_probs=48.6

Q ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhcccc
Q psy8397          56 SGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGL  127 (203)
Q Consensus        56 SgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~  127 (203)
                      +++..++-.|+.++..+|+.+++|||+.       .+.++.++.+.....|++.++|..+  ..+.++|+..
T Consensus       236 ~~~~t~~~~i~~~l~~~pd~~l~~e~r~-------~~~~~~l~~l~~g~~~~l~t~H~~~--~~~~~~Rl~~  298 (361)
T 2gza_A          236 NAPVTAATLLRSCLRMKPTRILLAELRG-------GEAYDFINVAASGHGGSITSCHAGS--CELTFERLAL  298 (361)
T ss_dssp             ---CCHHHHHHHHTTSCCSEEEESCCCS-------THHHHHHHHHHTTCCSCEEEEECSS--HHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHhcCCCEEEEcCchH-------HHHHHHHHHHhcCCCeEEEEECCCC--HHHHHHHHHH
Confidence            3667789999999999999999999986       3566778777665668999999976  4566777755

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=91.86  E-value=0.1  Score=40.64  Aligned_cols=38  Identities=16%  Similarity=0.230  Sum_probs=33.7

Q ss_pred             HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy8397          61 KRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKAL  100 (203)
Q Consensus        61 qrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l  100 (203)
                      +...+|++++.+|+++++|  ||++|+....++++.|.+.
T Consensus       152 ~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~~  189 (191)
T 1oix_A          152 VPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILTE  189 (191)
T ss_dssp             SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHHH
Confidence            3467899999999999999  9999999999999987653

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=91.71  E-value=0.027  Score=46.17  Aligned_cols=83  Identities=8%  Similarity=0.179  Sum_probs=55.0

Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchh
Q psy8397          79 DEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSA  158 (203)
Q Consensus        79 DEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~  158 (203)
                      +.+...|..-.++++ .+.+.+..+-.-+|+  =.|.         -++|..+...+.+.++.+.++|+|||+++|+++ 
T Consensus       128 ~~~~~~LSgGqkqrv-~laraL~~~p~lllL--DEPt---------s~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-  194 (214)
T 1sgw_A          128 KKKLGELSQGTIRRV-QLASTLLVNAEIYVL--DDPV---------VAIDEDSKHKVLKSILEILKEKGIVIISSREEL-  194 (214)
T ss_dssp             TSBGGGSCHHHHHHH-HHHHHTTSCCSEEEE--ESTT---------TTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC-
T ss_pred             CCChhhCCHHHHHHH-HHHHHHHhCCCEEEE--ECCC---------cCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-
Confidence            778888887776664 444555543222222  1121         145888889999999988666899999999998 


Q ss_pred             HHHhhcCEEEEEeCCeE
Q psy8397         159 TIFEMVDHLYVIAEGHC  175 (203)
Q Consensus       159 ~i~~~~d~v~vl~~G~i  175 (203)
                      .+..+||++++ ..|+|
T Consensus       195 ~~~~~~d~v~~-~~~~~  210 (214)
T 1sgw_A          195 SYCDVNENLHK-YSTKI  210 (214)
T ss_dssp             TTSSEEEEGGG-GBC--
T ss_pred             HHHHhCCEEEE-eCCcc
Confidence            46778888764 44554

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=91.66  E-value=0.08  Score=48.17  Aligned_cols=57  Identities=12%  Similarity=0.074  Sum_probs=48.0

Q ss_pred             CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH-HHhCCCeEEEEecC
Q psy8397          54 RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKA-LARGGRTIVCTIHQ  113 (203)
Q Consensus        54 ~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~-l~~~g~tvi~~tH~  113 (203)
                      .|+-..   +.++++|..+++++++|+|+..|.+.....+.+.+++ +...|.+|+.+|.+
T Consensus       161 ~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~  218 (427)
T 2qag_B          161 SLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD  218 (427)
T ss_dssp             --CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred             CCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence            456555   7899999999999999999999999999999999987 88889999998865

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=90.87  E-value=0.35  Score=40.41  Aligned_cols=49  Identities=14%  Similarity=0.230  Sum_probs=34.2

Q ss_pred             HHHHHhcCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCeEEEEecC
Q psy8397          65 IALELIDNPPIMFLDEPTT-GLDSNSTNQCVAMLKALARGGRTIVCTIHQ  113 (203)
Q Consensus        65 iA~aL~~~P~vLlLDEPt~-gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~  113 (203)
                      +..++..+|+++++||+-. ..+.......++.+..+...|..++.|+|-
T Consensus        77 l~~~L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~Nl  126 (228)
T 2r8r_A           77 LDALLKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVNV  126 (228)
T ss_dssp             HHHHHHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEEG
T ss_pred             HHHHHhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEccc
Confidence            3344557899999999864 244444445666666677779999999984

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=90.65  E-value=1  Score=38.15  Aligned_cols=44  Identities=11%  Similarity=0.065  Sum_probs=35.6

Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh---CCCeEEEEecCCC
Q psy8397          71 DNPPIMFLDEPTTGLDSNSTNQCVAMLKALAR---GGRTIVCTIHQPS  115 (203)
Q Consensus        71 ~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~---~g~tvi~~tH~~~  115 (203)
                      .+|.+|++||+... |+.....+.+.+..+..   .+.++|+++|++.
T Consensus       124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~  170 (389)
T 1fnn_A          124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDA  170 (389)
T ss_dssp             TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTH
T ss_pred             CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCch
Confidence            45889999999876 88888888887776665   5789999999873

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=90.39  E-value=0.37  Score=41.95  Aligned_cols=48  Identities=15%  Similarity=-0.035  Sum_probs=34.7

Q ss_pred             HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCC
Q psy8397          60 KKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALAR-GGRTIVCTIHQP  114 (203)
Q Consensus        60 rqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~-~g~tvi~~tH~~  114 (203)
                      .+.-.+++++..++.+++||.+|.       +.+.+.++.+.+ .|.|+|++||.-
T Consensus       231 ~eL~~i~ral~~de~llvLDa~t~-------~~~~~~~~~~~~~~~it~iilTKlD  279 (328)
T 3e70_C          231 DEMKKIARVTKPNLVIFVGDALAG-------NAIVEQARQFNEAVKIDGIILTKLD  279 (328)
T ss_dssp             HHHHHHHHHHCCSEEEEEEEGGGT-------THHHHHHHHHHHHSCCCEEEEECGG
T ss_pred             HHHHHHHHHhcCCCCEEEEecHHH-------HHHHHHHHHHHHhcCCCEEEEeCcC
Confidence            334458899988888888885543       456666777764 499999999963

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=90.18  E-value=0.1  Score=45.44  Aligned_cols=46  Identities=15%  Similarity=0.308  Sum_probs=40.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhc------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q psy8397          52 CGRLSGGQKKRLSIALELID------NPPIMFLDEPTTGLDSNSTNQCVAMLKALA  101 (203)
Q Consensus        52 v~~LSgGqrqrl~iA~aL~~------~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~  101 (203)
                      ...+|+|++|++..+.+++.      .|++++    +|++|......+++.|.++.
T Consensus       208 ~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~  259 (337)
T 2qm8_A          208 GERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHR  259 (337)
T ss_dssp             CHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHH
Confidence            35689999999999999987      688886    99999999999999998865

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=88.95  E-value=0.00011  Score=68.25  Aligned_cols=54  Identities=13%  Similarity=0.056  Sum_probs=42.5

Q ss_pred             cCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEE--EecCCCc
Q psy8397          51 LCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVC--TIHQPSA  116 (203)
Q Consensus        51 ~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~--~tH~~~~  116 (203)
                      ....+||||+||++++          ++ | |+||||...+.+++.+.++...|.|+++  +||++++
T Consensus       397 ~~~~~s~G~~~R~~~a----------i~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~e  452 (511)
T 2oap_1          397 QTMWVRGNTRLRRTKE----------VN-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEK  452 (511)
T ss_dssp             EEEEESSSCEEEEEEE----------EE-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHH
T ss_pred             EEEEEeCCCceEEEEE----------EE-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHH
Confidence            3446899999887664          11 7 9999999888888888877777999986  9999764

>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*

Probab=88.35  E-value=0.47  Score=38.70  Aligned_cols=54  Identities=19%  Similarity=0.162  Sum_probs=33.5

Q ss_pred             HHHHHHHHHHh--cCCCEEEEeCCCC--CCCHHHHHHHHHHHHHHHhCCCeEEEEecCC
Q psy8397          60 KKRLSIALELI--DNPPIMFLDEPTT--GLDSNSTNQCVAMLKALARGGRTIVCTIHQP  114 (203)
Q Consensus        60 rqrl~iA~aL~--~~P~vLlLDEPt~--gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~  114 (203)
                      +..+..|+..+  .+.++++|||.+.  .++.....++++.|.. +-....||+|+...
T Consensus       106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~-Rp~~~~vIlTGr~a  163 (196)
T 1g5t_A          106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNA-RPGHQTVIITGRGC  163 (196)
T ss_dssp             HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHT-SCTTCEEEEECSSC
T ss_pred             HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHh-CcCCCEEEEECCCC
Confidence            55666677777  5689999999975  2333444566666653 22245555555554

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=88.33  E-value=11  Score=33.51  Aligned_cols=108  Identities=21%  Similarity=0.192  Sum_probs=66.9

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCCCchhhhhhhcc--cc-C
Q psy8397          53 GRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALAR-GGRTIVCTIHQPSATIFEMVDHL--GL-D  128 (203)
Q Consensus        53 ~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~-~g~tvi~~tH~~~~~~~~~~~~~--~~-~  128 (203)
                      +.||..+.+++.-|...+.+.++.+.|+|.  +++   ..+...++++.+ .|..+|++-+--.      +..-  +- .
T Consensus       263 g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~--~s~---~~l~~~~~~l~~~~~~~lIvID~l~~------~~~~~~~~~~  331 (444)
T 2q6t_A          263 GQLTDRDFSRLVDVASRLSEAPIYIDDTPD--LTL---MEVRARARRLVSQNQVGLIIIDYLQL------MSGPGSGKSG  331 (444)
T ss_dssp             GGCCHHHHHHHHHHHHHHHTSCEEEECCTT--CBH---HHHHHHHHHHHHHSCCCEEEEECGGG------CBCC------
T ss_pred             CCCCHHHHHHHHHHHHHHhcCCEEEECCCC--CCH---HHHHHHHHHHHHHcCCCEEEEcChhh------cCCCcCCCCC
Confidence            579999999999988888888899988774  333   345556666654 4777777754311      0000  00 0


Q ss_pred             CCchhH---HHHHHHHh-hhCCceEEEeecCchh------------------HHHhhcCEEEEEe
Q psy8397         129 SNSTNQ---CVAMLKAL-ARGGRTIVCTIHQPSA------------------TIFEMVDHLYVIA  171 (203)
Q Consensus       129 ~~~~~~---~~~~~~~~-~~~g~tvi~~~h~~~~------------------~i~~~~d~v~vl~  171 (203)
                      .+...+   ....++.+ ++.+.+|++++|-...                  .+...+|.|+++.
T Consensus       332 ~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~aD~vi~L~  396 (444)
T 2q6t_A          332 ENRQQEIAAISRGLKALARELGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVMFIY  396 (444)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGGCSEEEEEE
T ss_pred             CCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCChHHhcchhHHHHhCCEEEEEe
Confidence            011222   33445555 5569999999884210                  2456889999885

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=87.79  E-value=0.75  Score=37.99  Aligned_cols=60  Identities=20%  Similarity=0.331  Sum_probs=39.1

Q ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH----------HHHHHHHHHHHHh----CCCeEEEEecCCC
Q psy8397          56 SGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNS----------TNQCVAMLKALAR----GGRTIVCTIHQPS  115 (203)
Q Consensus        56 SgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~----------~~~i~~~l~~l~~----~g~tvi~~tH~~~  115 (203)
                      +++++.+..++.+...+|.+||+||+.+.++...          ...++..+.....    .+..||.+|+.++
T Consensus        97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~  170 (297)
T 3b9p_A           97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQ  170 (297)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGG
T ss_pred             hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChh
Confidence            4678888888989889999999999987655322          2233333333221    2356778888653

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=87.25  E-value=0.00057  Score=57.89  Aligned_cols=63  Identities=17%  Similarity=0.064  Sum_probs=47.6

Q ss_pred             ccCCCCCHHHHHHHHHHHHHhcCCCE--EEEeCCCCCCCHHHH--------HHHHHHHHHHHhCCCeEEEEecCC
Q psy8397          50 TLCGRLSGGQKKRLSIALELIDNPPI--MFLDEPTTGLDSNST--------NQCVAMLKALARGGRTIVCTIHQP  114 (203)
Q Consensus        50 ~~v~~LSgGqrqrl~iA~aL~~~P~v--LlLDEPt~gLD~~~~--------~~i~~~l~~l~~~g~tvi~~tH~~  114 (203)
                      ++.-.+|+|  ||+++++++..+|++  +|+||.|+.+|...+        ..+.+...++..+|+|.+.+.|.+
T Consensus       168 qrl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a~r~  240 (261)
T 2eyu_A          168 QRLLPKIGG--GRVLAYGLLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDAMEA  240 (261)
T ss_dssp             EEEECCSSS--SSEEEEEEECCCHHHHHHHHHTCHHHHHHHHHHSCSCTTEECHHHHHHHHHHTTSSCHHHHHHH
T ss_pred             EEeEecCCC--CEEEEEEEecCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHcCCCCHHHHHHH
Confidence            333457888  899999999999999  999999999997632        234444445556788887777764

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=87.25  E-value=0.41  Score=37.10  Aligned_cols=37  Identities=16%  Similarity=0.259  Sum_probs=32.4

Q ss_pred             HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q psy8397          63 LSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALA  101 (203)
Q Consensus        63 l~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~  101 (203)
                      ...|++++.+|+++++|  |+++|+....++++.|.+..
T Consensus       130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~  166 (199)
T 2f9l_A          130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI  166 (199)
T ss_dssp             HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence            45689999999999999  99999999999999877643

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=86.04  E-value=0.51  Score=41.49  Aligned_cols=65  Identities=20%  Similarity=0.191  Sum_probs=48.4

Q ss_pred             HHHHHHHHHcCCcccc----cccCCCCCHHHHHHHHHH----HHH-hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q psy8397          33 GLVDDILDTIGLVLSK----HTLCGRLSGGQKKRLSIA----LEL-IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALA  101 (203)
Q Consensus        33 ~~v~~~L~~~~L~~~~----~~~v~~LSgGqrqrl~iA----~aL-~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~  101 (203)
                      +.+.++++.+++.+..    ..++..+|+|+++++.++    +.+ ..+|++    +|+|++|......+++.|.++.
T Consensus       279 ~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~SA~~g~gi~~L~~~I~~~l  352 (364)
T 2qtf_A          279 QSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV----IPISALKRTNLELLRDKIYQLA  352 (364)
T ss_dssp             HHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE----EECBTTTTBSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE----EEEECCCCcCHHHHHHHHHHHh
Confidence            3456778887765443    456677898888888877    555 444454    8999999999999999888765

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=85.61  E-value=0.039  Score=47.54  Aligned_cols=44  Identities=27%  Similarity=0.271  Sum_probs=34.4

Q ss_pred             cCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q psy8397          42 IGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALAR  102 (203)
Q Consensus        42 ~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~  102 (203)
                      +++.. ..++++.||+|++||+.++                .+||+.+...+.++|++..+
T Consensus       151 ~~li~-at~~~~~Ls~~l~sR~~l~----------------~~Ld~~~~~~l~~iL~~~~~  194 (334)
T 1in4_A          151 FTLVG-ATTRSGLLSSPLRSRFGII----------------LELDFYTVKELKEIIKRAAS  194 (334)
T ss_dssp             CEEEE-EESCGGGSCHHHHTTCSEE----------------EECCCCCHHHHHHHHHHHHH
T ss_pred             eEEEE-ecCCcccCCHHHHHhcCce----------------eeCCCCCHHHHHHHHHHHHH
Confidence            44433 5677889999999998554                78888888999999888764

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=84.63  E-value=0.0044  Score=49.67  Aligned_cols=30  Identities=10%  Similarity=0.084  Sum_probs=25.9

Q ss_pred             CCCCHHHHHHHHHH-HHHhcCCCEEEEeCCC
Q psy8397          53 GRLSGGQKKRLSIA-LELIDNPPIMFLDEPT   82 (203)
Q Consensus        53 ~~LSgGqrqrl~iA-~aL~~~P~vLlLDEPt   82 (203)
                      ..+|+||+|++++| ++++.++.++++|||.
T Consensus       110 ~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~  140 (208)
T 3c8u_A          110 RDIAIAGAAEVGPECRVAIIEGNYLLFDAPG  140 (208)
T ss_dssp             TTEEEEEEEEECTTCCEEEEEESSTTBCSTT
T ss_pred             ccCCCCCceEEcCCCcEEEECCceeccCCch
Confidence            35799999999998 8888999888899984

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=84.11  E-value=0.014  Score=52.88  Aligned_cols=37  Identities=16%  Similarity=0.163  Sum_probs=30.7

Q ss_pred             HHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEE
Q psy8397          37 DILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMF   77 (203)
Q Consensus        37 ~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLl   77 (203)
                      +.|..+|+....  .+..|||||+||  ||++|+.+|++..
T Consensus       278 ~rL~~lgl~~~~--~~~~LSgg~~QR--LaraL~~~p~~~~  314 (418)
T 1p9r_A          278 TRLRDMGIEPFL--ISSSLLGVLAQR--LVRTLCPDCKEPY  314 (418)
T ss_dssp             HHHHHHTCCHHH--HHHHEEEEEEEE--EEEEECTTTCEEE
T ss_pred             HHHHHcCCcHHH--HHHHHHHHHHHH--hhhhhcCCCCccC
Confidence            346677887653  678899999999  9999999999876

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=84.04  E-value=1.5  Score=36.72  Aligned_cols=45  Identities=9%  Similarity=0.130  Sum_probs=35.2

Q ss_pred             hcCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCeEEEEecCC
Q psy8397          70 IDNPPIMFLDEPTT-GLDSNSTNQCVAMLKALARGGRTIVCTIHQP  114 (203)
Q Consensus        70 ~~~P~vLlLDEPt~-gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~  114 (203)
                      ..+|.+||+||+.. .-+......++..+..+...|..+|++++..
T Consensus        96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~  141 (324)
T 1l8q_A           96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRH  141 (324)
T ss_dssp             HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence            35699999999865 3344778889999988888888888888754

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=83.95  E-value=0.00096  Score=59.25  Aligned_cols=60  Identities=20%  Similarity=0.133  Sum_probs=45.9

Q ss_pred             CCCHHHHHHHHHHHHHhcCCCE--EEEeCCCCCCCHHH---H-----HHHHHHHHHHHhCCCeEEEEecCCC
Q psy8397          54 RLSGGQKKRLSIALELIDNPPI--MFLDEPTTGLDSNS---T-----NQCVAMLKALARGGRTIVCTIHQPS  115 (203)
Q Consensus        54 ~LSgGqrqrl~iA~aL~~~P~v--LlLDEPt~gLD~~~---~-----~~i~~~l~~l~~~g~tvi~~tH~~~  115 (203)
                      .+|+|  ||+++++++..+|++  +|+||.|+.||...   .     ..+.+...++..+|.|.+.+.|.+.
T Consensus       283 ~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a~r~~  352 (372)
T 2ewv_A          283 PKIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDAMEAS  352 (372)
T ss_dssp             ECSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHHCC-------CBCSHHHHHHTTTTSSSCTTTTTSSC
T ss_pred             ecCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHCCCCCHHHHHHHc
Confidence            45888  889999999999999  99999999998651   1     2244444445567998888888764

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=83.94  E-value=0.0049  Score=52.17  Aligned_cols=48  Identities=10%  Similarity=0.153  Sum_probs=37.3

Q ss_pred             ccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC------------CCCHHHHHHHHHHH
Q psy8397          48 KHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTT------------GLDSNSTNQCVAML   97 (203)
Q Consensus        48 ~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~------------gLD~~~~~~i~~~l   97 (203)
                      .++.+..|||||+||+.|++|+.++|++|  |||+.            -.|...+..+++.+
T Consensus       131 ~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~i~~~~P~~~~r~~il~~~  190 (274)
T 2x8a_A          131 VNQLLTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKTLFVGLPPPADRLAILKTI  190 (274)
T ss_dssp             HHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEEEECCSCCHHHHHHHHHHH
T ss_pred             HHHHHHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeEEEeCCcCHHHHHHHHHHH
Confidence            34556679999999999999999999985  99864            23666777766644

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=83.35  E-value=0.22  Score=46.44  Aligned_cols=49  Identities=16%  Similarity=0.247  Sum_probs=40.4

Q ss_pred             ccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy8397          50 TLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKA   99 (203)
Q Consensus        50 ~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~   99 (203)
                      ...+.+|+|++|++..++....++.+|||||... |++.....+++.|.+
T Consensus       179 ~~~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~  227 (604)
T 3k1j_A          179 FQSGGLGTPAHERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE  227 (604)
T ss_dssp             C----CCCCGGGGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred             hhcCCccccccccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence            3446799999999999999999999999999988 899888888888875

>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}

Probab=83.35  E-value=7.1  Score=35.00  Aligned_cols=107  Identities=16%  Similarity=0.121  Sum_probs=67.3

Q ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCe--EEEEecCCCchhhhhhhccccCCCc
Q psy8397          55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALAR-GGRT--IVCTIHQPSATIFEMVDHLGLDSNS  131 (203)
Q Consensus        55 LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~-~g~t--vi~~tH~~~~~~~~~~~~~~~~~~~  131 (203)
                      |+..+.+++.-|...+.+.++++.|+|.  +++   ..+...++++.+ .|..  +|++-+--.      ...-.-..+.
T Consensus       263 l~~~~~~~l~~a~~~l~~~~l~i~d~~~--~s~---~~i~~~ir~l~~~~~~~~~lIVID~Lq~------~~~~~~~~~r  331 (444)
T 3bgw_A          263 FASEDWGKLSMAIGEISNSNINIFDKAG--QSV---NYIWSKTRQTKRKNPGKRVIVMIDYLQL------LEPAKANDSR  331 (444)
T ss_dssp             TCCSCHHHHHHHHHHHHTSCEEEECCSS--CBH---HHHHHHHHHHHHHSCSSCEEEEEECSTT------SBCSCSSSCH
T ss_pred             CCHHHHHHHHHHHHHHhcCCEEEECCCC--CCH---HHHHHHHHHHHHHhCCCCeEEEEecHHh------ccCCCCCCCH
Confidence            8888899999888888888899989874  444   345556666654 3777  777755311      1000001122


Q ss_pred             hhHHH---HHHHHh-hhCCceEEEeecCchh------------------HHHhhcCEEEEEeC
Q psy8397         132 TNQCV---AMLKAL-ARGGRTIVCTIHQPSA------------------TIFEMVDHLYVIAE  172 (203)
Q Consensus       132 ~~~~~---~~~~~~-~~~g~tvi~~~h~~~~------------------~i~~~~d~v~vl~~  172 (203)
                      ..++.   ..++.+ ++.+.+|++++|-...                  .+...+|-|+++..
T Consensus       332 ~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~krp~lsdlr~Sg~ieq~aD~Vi~L~r  394 (444)
T 3bgw_A          332 TNQISQISRDLKKMARELDVVVIALSQLSRQVEQRQDKRPMLSDLRESGQLEQDADIIEFLYR  394 (444)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCEEEEEEECCGGGGGSSCCCCCGGGCCSCSHHHHHCSEEEECCB
T ss_pred             HHHHHHHHHHHHHHHHHhCCeEEEEecCCccccccCCCCCchhhhhhhhhHHhhCCEEEEEec
Confidence            22333   345555 5569999999994321                  26678899988863

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=82.95  E-value=0.99  Score=38.52  Aligned_cols=55  Identities=16%  Similarity=0.141  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHh---cCCCEEEEeCCCCCCCH--------HH----HHHHHHHHHHHHhC-CCeEEEEecCC
Q psy8397          60 KKRLSIALELI---DNPPIMFLDEPTTGLDS--------NS----TNQCVAMLKALARG-GRTIVCTIHQP  114 (203)
Q Consensus        60 rqrl~iA~aL~---~~P~vLlLDEPt~gLD~--------~~----~~~i~~~l~~l~~~-g~tvi~~tH~~  114 (203)
                      .+.+..++.++   .+|+++++|+.++-...        ..    ..+++..|+.++++ +.+||++.|-.
T Consensus       188 ~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~~  258 (324)
T 2z43_A          188 IAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVM  258 (324)
T ss_dssp             HHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC-
T ss_pred             HHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEccee
Confidence            35677777777   67999999999875432        12    23445555555554 99999998864

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=82.60  E-value=0.19  Score=42.25  Aligned_cols=26  Identities=12%  Similarity=0.018  Sum_probs=18.0

Q ss_pred             cccccCCCCCHHHHH-HHHHHHHHhcC
Q psy8397          47 SKHTLCGRLSGGQKK-RLSIALELIDN   72 (203)
Q Consensus        47 ~~~~~v~~LSgGqrq-rl~iA~aL~~~   72 (203)
                      ..|.|...|.-..++ -..+-+.+..+
T Consensus       170 llDEPts~LD~~~~~~i~~~l~~l~~~  196 (266)
T 4g1u_C          170 FLDEPTSALDLYHQQHTLRLLRQLTRQ  196 (266)
T ss_dssp             EECCCCSSCCHHHHHHHHHHHHHHHHH
T ss_pred             EEeCccccCCHHHHHHHHHHHHHHHHc
Confidence            469999999866554 45566666654

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=81.96  E-value=0.2  Score=43.52  Aligned_cols=50  Identities=16%  Similarity=0.191  Sum_probs=38.9

Q ss_pred             ccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeE
Q psy8397         124 HLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHC  175 (203)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i  175 (203)
                      .|.+|+....++.+.++++...+.|+++++|..+  +...+||++++.+|..
T Consensus       243 ilildE~~~~e~~~~l~~~~~g~~tvi~t~H~~~--~~~~~dri~~l~~g~~  292 (330)
T 2pt7_A          243 RIILGELRSSEAYDFYNVLCSGHKGTLTTLHAGS--SEEAFIRLANMSSSNS  292 (330)
T ss_dssp             EEEECCCCSTHHHHHHHHHHTTCCCEEEEEECSS--HHHHHHHHHHHHHTSG
T ss_pred             EEEEcCCChHHHHHHHHHHhcCCCEEEEEEcccH--HHHHhhhheehhcCCc
Confidence            3445666666677788888766678999999987  5788999999998863

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=80.80  E-value=0.83  Score=42.86  Aligned_cols=61  Identities=15%  Similarity=0.159  Sum_probs=48.4

Q ss_pred             CCCCCHH-HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecC
Q psy8397          52 CGRLSGG-QKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQ  113 (203)
Q Consensus        52 v~~LSgG-qrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~  113 (203)
                      .+.|+.+ .++...+.+.++.+|.-++++.+|+++|... ....++++++... +.||+++||-
T Consensus       162 t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~-~~~l~la~~v~~~g~rtI~VlTK~  224 (608)
T 3szr_A          162 VGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIAT-TEALSMAQEVDPEGDRTIGILTKP  224 (608)
T ss_dssp             -CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTT-CHHHHHHHHHCSSCCSEEEEEECG
T ss_pred             cCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhcc-HHHHHHHHHHhhcCCceEEEecch
Confidence            6666544 4588889999999999999999999999884 4577788887655 5799999983

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=80.80  E-value=1.7  Score=37.53  Aligned_cols=54  Identities=9%  Similarity=0.102  Sum_probs=36.3

Q ss_pred             HHHHHHHHHh----cCCCEEEEeCCCCCCCHH--------H----HHHHHHHHHHHHhC-CCeEEEEecCC
Q psy8397          61 KRLSIALELI----DNPPIMFLDEPTTGLDSN--------S----TNQCVAMLKALARG-GRTIVCTIHQP  114 (203)
Q Consensus        61 qrl~iA~aL~----~~P~vLlLDEPt~gLD~~--------~----~~~i~~~l~~l~~~-g~tvi~~tH~~  114 (203)
                      +.+..++.++    .+++++++|+.++-....        .    ...+...|+.++++ |.+||+++|-.
T Consensus       204 ~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~  274 (343)
T 1v5w_A          204 ELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMT  274 (343)
T ss_dssp             HHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC-
T ss_pred             HHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeece
Confidence            4555556665    679999999999865432        1    24455556666554 89999999874

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=80.46  E-value=0.046  Score=43.54  Aligned_cols=38  Identities=11%  Similarity=0.171  Sum_probs=30.6

Q ss_pred             HHH-HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q psy8397          65 IAL-ELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALAR  102 (203)
Q Consensus        65 iA~-aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~  102 (203)
                      .++ +++.+|++++|||||+++|..+...+.+.|....+
T Consensus       116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~  154 (198)
T 1lvg_A          116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAART  154 (198)
T ss_dssp             CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHH
T ss_pred             CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence            455 67788888888999999999888888888877653

>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3

Probab=80.12  E-value=7.2  Score=29.76  Aligned_cols=61  Identities=11%  Similarity=0.123  Sum_probs=45.7

Q ss_pred             HHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCe
Q psy8397          98 KALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGH  174 (203)
Q Consensus        98 ~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~  174 (203)
                      ......+-.+|++|+-                |.+....+.++..++.|.++|.+|......+.+++|.++.+..|.
T Consensus       105 ~~~~~~~Dvvi~iS~s----------------G~t~~~~~~~~~ak~~g~~vi~iT~~~~s~L~~~ad~~l~~~~~~  165 (188)
T 1tk9_A          105 EALGNEKDVLIGISTS----------------GKSPNVLEALKKAKELNMLCLGLSGKGGGMMNKLCDHNLVVPSDD  165 (188)
T ss_dssp             HHHCCTTCEEEEECSS----------------SCCHHHHHHHHHHHHTTCEEEEEEEGGGTTHHHHCSEEEEESCSC
T ss_pred             HHhCCCCCEEEEEeCC----------------CCCHHHHHHHHHHHHCCCEEEEEeCCCCcchHHcCCEEEEeCCCC
Confidence            3334456777888874                556677788887788899888888877777899999988776553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	203
d1g6ha_	254	c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann	1e-16
d1ji0a_	240	c.37.1.12 (A:) Branched chain aminoacid ABC transp	6e-15
d1r0wa_	281	c.37.1.12 (A:) Cystic fibrosis transmembrane condu	1e-14
d1l2ta_	230	c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann	2e-14
d3b60a1	253	c.37.1.12 (A:329-581) Multidrug resistance ABC tra	2e-14
d1v43a3	239	c.37.1.12 (A:7-245) Hypothetical protein PH0022, N	4e-14
d2hyda1	255	c.37.1.12 (A:324-578) Putative multidrug export AT	3e-13
d3dhwc1	240	c.37.1.12 (C:1-240) Methionine import ATP-binding	2e-12
d1vpla_	238	c.37.1.12 (A:) Putative ABC transporter TM0544 {Th	3e-12
d1b0ua_	258	c.37.1.12 (A:) ATP-binding subunit of the histidin	5e-12
d2pmka1	241	c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro	5e-12
d1sgwa_	200	c.37.1.12 (A:) Putative ABC transporter PF0895 {Py	9e-12
d1mv5a_	242	c.37.1.12 (A:) Multidrug resistance ABC transporte	1e-11
d1jj7a_	251	c.37.1.12 (A:) Peptide transporter Tap1, C-termina	2e-11
d1l7vc_	231	c.37.1.12 (C:) ABC transporter involved in vitamin	1e-10
d1g2912	240	c.37.1.12 (1:1-240) Maltose transport protein MalK	1e-10
g1ii8.1	369	c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio	3e-09
g1f2t.1	292	c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio	4e-08
d2awna2	232	c.37.1.12 (A:4-235) Maltose transport protein MalK	5e-08
d1w1wa_	427	c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac	5e-06
d3d31a2	229	c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor	1e-05
d1oxxk2	242	c.37.1.12 (K:1-242) Glucose transport protein GlcV	4e-05
d2onka1	240	c.37.1.12 (A:1-240) Molybdate/tungstate import ATP	2e-04

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 73.5 bits (180), Expect = 1e-16
 Identities = 27/119 (22%), Positives = 47/119 (39%), Gaps = 1/119 (0%)

Query: 7   GTIWCWQIISAQYSHRISVDDILDTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIA 66
           G I   +       ++  +    + +     IL+ + L        G LSGGQ K + I 
Sbjct: 103 GEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIG 162

Query: 67  LELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHL 125
             L+ NP ++ +DEP  G+     +     +  L   G T +   H+    +   +DHL
Sbjct: 163 RALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD-IVLNYIDHL 220

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

 Score = 68.8 bits (168), Expect = 6e-15
 Identities = 21/118 (17%), Positives = 50/118 (42%), Gaps = 3/118 (2%)

Query: 8   TIWCWQIISAQYSHRISVDDILDTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIAL 67
            +  ++ +     +R   + I   +  +  +     L      L G LSGG+++ L+I  
Sbjct: 95  ELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFP--RLKERLKQLGGTLSGGEQQMLAIGR 152

Query: 68  ELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHL 125
            L+  P ++ +DEP+ GL     ++   +++ + + G TI+           ++  + 
Sbjct: 153 ALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALG-ALKVAHYG 209

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 68.4 bits (167), Expect = 1e-14
 Identities = 25/115 (21%), Positives = 39/115 (33%), Gaps = 8/115 (6%)

Query: 6   HGTIWCWQIISAQYSHRISVDDILDTIGLVDDILDTIGLVLSKHTLCGR----LSGGQKK 61
            GTI    II            ++    L  DI          +T+ G     LSGGQ+ 
Sbjct: 110 PGTIK-ENIIFGVSYDEYRYKSVVKACQLQQDIT---KFAEQDNTVLGEGGVTLSGGQRA 165

Query: 62  RLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSA 116
           R+S+A  +  +  +  LD P   LD  +  Q            +T +    +   
Sbjct: 166 RISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEH 220

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 67.6 bits (165), Expect = 2e-14
 Identities = 26/70 (37%), Positives = 42/70 (60%), Gaps = 1/70 (1%)

Query: 48  KHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALAR-GGRT 106
            +    +LSGGQ++R++IA  L +NPPI+  D+PT  LDS +  + + +LK L    G+T
Sbjct: 139 ANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKT 198

Query: 107 IVCTIHQPSA 116
           +V   H  + 
Sbjct: 199 VVVVTHDINV 208

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

 Score = 67.6 bits (165), Expect = 2e-14
 Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 6/92 (6%)

Query: 25  VDDILDTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTG 84
           +   +D I  +D+ LDTI            LSGGQ++R++IA  L+ + PI+ LDE T+ 
Sbjct: 128 MAYAMDFINKMDNGLDTI-----IGENGVLLSGGQRQRIAIARALLRDSPILILDEATSA 182

Query: 85  LDSNSTNQCVAMLKALARGGRTIVCTIHQPSA 116
           LD+ S     A L  L +  RT +   H+ S 
Sbjct: 183 LDTESERAIQAALDELQK-NRTSLVIAHRLST 213

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 66.3 bits (162), Expect = 4e-14
 Identities = 19/82 (23%), Positives = 39/82 (47%), Gaps = 1/82 (1%)

Query: 35  VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
           V    + + +    +    +LSGGQ++R+++A  ++  P ++ +DEP + LD+       
Sbjct: 117 VRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMR 176

Query: 95  AMLKALA-RGGRTIVCTIHQPS 115
           A +K L  +   T +   H   
Sbjct: 177 AEIKKLQQKLKVTTIYVTHDQV 198

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

 Score = 64.0 bits (156), Expect = 3e-13
 Identities = 28/63 (44%), Positives = 39/63 (61%), Gaps = 1/63 (1%)

Query: 54  RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQ 113
           +LSGGQK+RLSIA   ++NPPI+ LDE T+ LD  S +     L  L++  RT +   H+
Sbjct: 154 KLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK-DRTTLIVAHR 212

Query: 114 PSA 116
            S 
Sbjct: 213 LST 215

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

 Score = 61.8 bits (150), Expect = 2e-12
 Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 2/92 (2%)

Query: 35  VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
           V ++L  +GL     +    LSGGQK+R++IA  L  NP ++  DE T+ LD  +T   +
Sbjct: 121 VTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSIL 180

Query: 95  AMLKALAR-GGRTIVCTIHQPSATIFEMVDHL 125
            +LK + R  G TI+   H+    +  + D +
Sbjct: 181 ELLKDINRRLGLTILLITHEM-DVVKRICDCV 211

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

 Score = 61.2 bits (148), Expect = 3e-12
 Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 1/94 (1%)

Query: 34  LVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQC 93
           +V+   +  GL           S G  ++L IA  L+ NP +  LDEPT+GLD  +  + 
Sbjct: 113 MVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREV 172

Query: 94  VAMLKALARGGRTIVCTIHQPSATIFEMVDHLGL 127
             +LK  ++ G TI+ + H     +  + D + L
Sbjct: 173 RKILKQASQEGLTILVSSHNMLE-VEFLCDRIAL 205

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

 Score = 60.6 bits (147), Expect = 5e-12
 Identities = 29/109 (26%), Positives = 52/109 (47%), Gaps = 4/109 (3%)

Query: 5   NHGTIWCWQIISAQYSHRISVDDILDTIGLVDDILDTIGLV-LSKHTLCGRLSGGQKKRL 63
           +H T+    + +      +S  D  +        L  +G+   ++      LSGGQ++R+
Sbjct: 102 SHMTVLENVMEAPIQVLGLSKHDARE---RALKYLAKVGIDERAQGKYPVHLSGGQQQRV 158

Query: 64  SIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112
           SIA  L   P ++  DEPT+ LD     + + +++ LA  G+T+V   H
Sbjct: 159 SIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTH 207

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

 Score = 60.3 bits (146), Expect = 5e-12
 Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 6/92 (6%)

Query: 25  VDDILDTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTG 84
           +    D I  + +  +TI            LSGGQ++R++IA  L++NP I+  DE T+ 
Sbjct: 115 LAGAHDFISELREGYNTI-----VGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSA 169

Query: 85  LDSNSTNQCVAMLKALARGGRTIVCTIHQPSA 116
           LD  S +  +  +  + + GRT++   H+ S 
Sbjct: 170 LDYESEHVIMRNMHKICK-GRTVIIIAHRLST 200

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 59.2 bits (143), Expect = 9e-12
 Identities = 18/79 (22%), Positives = 41/79 (51%), Gaps = 1/79 (1%)

Query: 35  VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
           + D L+++ ++  K  L G LS G  +R+ +A  L+ N  I  LD+P   +D +S ++ +
Sbjct: 107 IMDALESVEVLDLKKKL-GELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVL 165

Query: 95  AMLKALARGGRTIVCTIHQ 113
             +  + +    ++ +  +
Sbjct: 166 KSILEILKEKGIVIISSRE 184

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

 Score = 59.9 bits (145), Expect = 1e-11
 Identities = 26/63 (41%), Positives = 38/63 (60%), Gaps = 1/63 (1%)

Query: 54  RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQ 113
           ++SGGQ++RL+IA   + NP I+ LDE T  LDS S +     L +L + GRT +   H+
Sbjct: 139 KISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMK-GRTTLVIAHR 197

Query: 114 PSA 116
            S 
Sbjct: 198 LST 200

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.1 bits (143), Expect = 2e-11
 Identities = 26/109 (23%), Positives = 48/109 (44%), Gaps = 5/109 (4%)

Query: 13  QIISAQYSHRISVDDILDTIGLVDDILDTIGLVLSKHTLCGR----LSGGQKKRLSIALE 68
           + I+   + + ++++I              GL     T        LSGGQ++ +++A  
Sbjct: 106 ENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARA 165

Query: 69  LIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALA-RGGRTIVCTIHQPSA 116
           LI  P ++ LD+ T+ LD+NS  Q   +L     R  R+++      S 
Sbjct: 166 LIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSL 214

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

 Score = 56.9 bits (137), Expect = 1e-10
 Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 8/97 (8%)

Query: 36  DDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELI-------DNPPIMFLDEPTTGLDSN 88
           +D+   + L         +LSGG+ +R+ +A  ++           ++ LDEP   LD  
Sbjct: 107 NDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVA 166

Query: 89  STNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHL 125
             +    +L AL + G  IV + H  + T+       
Sbjct: 167 QQSALDKILSALCQQGLAIVMSSHDLNHTL-RHAHRA 202

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

 Score = 56.5 bits (136), Expect = 1e-10
 Identities = 25/106 (23%), Positives = 46/106 (43%), Gaps = 4/106 (3%)

Query: 11  CWQIISAQYSHRISVDDILDTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELI 70
              I       ++   +I      V ++ + +GL    +     LSGGQ++R+++   ++
Sbjct: 99  YDNIAFPLKLRKVPRQEIDQ---RVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIV 155

Query: 71  DNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPS 115
             P +  +DEP + LD+    +  A LK L R  G T +   H   
Sbjct: 156 RKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV 201

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 49.2 bits (117), Expect = 5e-08
 Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 1/82 (1%)

Query: 35  VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
           V+ + + + L          LSGGQ++R++I   L+  P +  LDEP + LD+    Q  
Sbjct: 111 VNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMR 170

Query: 95  AMLKALARG-GRTIVCTIHQPS 115
             +  L +  GRT++   H   
Sbjct: 171 IEISRLHKRLGRTMIYVTHDQV 192

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.9 bits (102), Expect = 5e-06
 Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 6/74 (8%)

Query: 56  SGGQKKRLSIALEL----IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTI 111
           SGG+K   ++AL          P   LDE    LD  +  +  A ++         +   
Sbjct: 334 SGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVIS 393

Query: 112 HQPSATIFEMVDHL 125
            + +  +FE  D L
Sbjct: 394 LKNT--MFEKSDAL 405

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

 Score = 42.4 bits (99), Expect = 1e-05
 Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 1/82 (1%)

Query: 35  VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
           V D    + +          LSGG+++R+++A  L+ NP I+ LDEP + LD  +     
Sbjct: 108 VLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAR 167

Query: 95  AMLKALA-RGGRTIVCTIHQPS 115
            ML  L  +   T++   H  +
Sbjct: 168 EMLSVLHKKNKLTVLHITHDQT 189

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score = 40.8 bits (95), Expect = 4e-05
 Identities = 25/92 (27%), Positives = 50/92 (54%), Gaps = 2/92 (2%)

Query: 35  VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
           V+++   + +    +     LSG Q++R+++A  L+ +P ++ LDEP + LD+   +   
Sbjct: 121 VEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSAR 180

Query: 95  AMLKALARG-GRTIVCTIHQPSATIFEMVDHL 125
           A++K +    G T++   H P A IF + D +
Sbjct: 181 ALVKEVQSRLGVTLLVVSHDP-ADIFAIADRV 211

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 38.8 bits (90), Expect = 2e-04
 Identities = 21/92 (22%), Positives = 44/92 (47%), Gaps = 2/92 (2%)

Query: 35  VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
           V ++ + +G+         RLSGG+++R+++A  L+  P ++ LDEP + +D  +    +
Sbjct: 107 VREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLM 166

Query: 95  AMLKALARG-GRTIVCTIHQPSATIFEMVDHL 125
             L+ + R     I+   H        + D +
Sbjct: 167 EELRFVQREFDVPILHVTHDLI-EAAMLADEV 197

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	203
d1g2912	240	Maltose transport protein MalK, N-terminal domain	100.0
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	100.0
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	100.0
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	100.0
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	100.0
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	100.0
d2awna2	232	Maltose transport protein MalK, N-terminal domain	100.0
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	100.0
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	100.0
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	100.0
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	99.98
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	99.98
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	99.97
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	99.95
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	99.95
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	99.95
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	99.95
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	99.94
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	99.92
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	99.87
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	99.73
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	99.52
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	99.15
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.54
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	98.51
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	97.71
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	95.24
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	94.16
d2awna2	232	Maltose transport protein MalK, N-terminal domain	93.28
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	93.07

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=100.00  E-value=9.8e-35  Score=246.42  Aligned_cols=135  Identities=24%  Similarity=0.349  Sum_probs=121.0

Q ss_pred             CceeEEEeeecccccCCCCHhHHHh------------HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCC
Q psy8397           6 HGTIWCWQIISAQYSHRISVDDILD------------TIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNP   73 (203)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P   73 (203)
                      ....++||.+  .+++.+||.|++.            .++++.++++.++|.+..++++.+|||||||||+|||||+++|
T Consensus        81 r~ig~v~Q~~--~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~~p~~LSGGqkQRv~IAraL~~~P  158 (240)
T d1g2912          81 RDIAMVFQSY--ALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKP  158 (240)
T ss_dssp             SSEEEECSCC--CCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCC
T ss_pred             ccceecccch--hhcchhhhhHhhhhhHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence            4577888865  3668899999764            3567999999999999999999999999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEe
Q psy8397          74 PIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCT  152 (203)
Q Consensus        74 ~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~  152 (203)
                      ++|||||||+|||+.++..+++.|+++.++ |.|||++|||++                                     
T Consensus       159 ~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~-------------------------------------  201 (240)
T d1g2912         159 QVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-------------------------------------  201 (240)
T ss_dssp             SEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-------------------------------------
T ss_pred             CEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHH-------------------------------------
Confidence            999999999999999999999999999865 778888877764                                     


Q ss_pred             ecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         153 IHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       153 ~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                            ++..+|||+++|++|++++.|+|++++
T Consensus       202 ------~~~~~~drv~vm~~G~iv~~G~~~el~  228 (240)
T d1g2912         202 ------EAMTMGDRIAVMNRGVLQQVGSPDEVY  228 (240)
T ss_dssp             ------HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred             ------HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence                  478899999999999999999999885

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=1e-34  Score=246.23  Aligned_cols=135  Identities=20%  Similarity=0.276  Sum_probs=117.3

Q ss_pred             CceeEEEeeecccccCCCCHhHHHh------------HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCC
Q psy8397           6 HGTIWCWQIISAQYSHRISVDDILD------------TIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNP   73 (203)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P   73 (203)
                      ....++||..  .+++.+||.|++.            .++++.++++.+||.+.+++++.+|||||||||+|||||+.+|
T Consensus        78 r~ig~v~Q~~--~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRvaiAraL~~~P  155 (239)
T d1v43a3          78 RNISMVFQSY--AVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEP  155 (239)
T ss_dssp             GTEEEEEC--------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCC
T ss_pred             ceEEEEeech--hhcccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHhhhccCC
Confidence            4577889865  3567899999763            4678899999999999999999999999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEe
Q psy8397          74 PIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCT  152 (203)
Q Consensus        74 ~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~  152 (203)
                      ++|||||||+||||.++..+++.|++++++ |.|+|++|||++                                     
T Consensus       156 ~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~-------------------------------------  198 (239)
T d1v43a3         156 DVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-------------------------------------  198 (239)
T ss_dssp             SEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-------------------------------------
T ss_pred             CceeecCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHH-------------------------------------
Confidence            999999999999999999999999999764 777777777764                                     


Q ss_pred             ecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         153 IHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       153 ~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                            ++..+|||+++|++|+|++.|+|+++.
T Consensus       199 ------~a~~~~dri~vm~~G~iv~~G~~~el~  225 (239)
T d1v43a3         199 ------EAMTMGDRIAVMNRGQLLQIGSPTEVY  225 (239)
T ss_dssp             ------HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred             ------HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence                  478899999999999999999999885

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=100.00  E-value=1.7e-34  Score=245.22  Aligned_cols=135  Identities=21%  Similarity=0.390  Sum_probs=120.4

Q ss_pred             CceeEEEeeecccccCCCCHhHHHh------------HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCC
Q psy8397           6 HGTIWCWQIISAQYSHRISVDDILD------------TIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNP   73 (203)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P   73 (203)
                      ....+.||...  +++.+||.|++.            .++++.++++.+||.+..++++.+|||||||||+|||||+++|
T Consensus        82 r~ig~vfQ~~~--L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p~~LSGGqkQRvaiARaL~~~P  159 (242)
T d1oxxk2          82 RKIGMVFQTWA--LYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDP  159 (242)
T ss_dssp             SCEEEEETTSC--CCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred             ccceEEecccc--ccccccHHHHhhhhhHhhcCCHHHHHHHHHHHHhhcChHhhhhCChhhCCHHHHhHHHHHhHHhhcc
Confidence            35778888653  567899999763            4678999999999999999999999999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEe
Q psy8397          74 PIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCT  152 (203)
Q Consensus        74 ~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~  152 (203)
                      ++|||||||+||||.++..+++.|+++.++ |.|+|++|||++                                     
T Consensus       160 ~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~-------------------------------------  202 (242)
T d1oxxk2         160 SLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-------------------------------------  202 (242)
T ss_dssp             SEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-------------------------------------
T ss_pred             cceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCHH-------------------------------------
Confidence            999999999999999999999999999754 777777777754                                     


Q ss_pred             ecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         153 IHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       153 ~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                            ++.++|||+++|++|+|++.|+|++++
T Consensus       203 ------~~~~~~dri~vm~~G~iv~~g~~~el~  229 (242)
T d1oxxk2         203 ------DIFAIADRVGVLVKGKLVQVGKPEDLY  229 (242)
T ss_dssp             ------HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred             ------HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence                  478899999999999999999999885

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3.1e-34  Score=243.30  Aligned_cols=134  Identities=26%  Similarity=0.374  Sum_probs=119.7

Q ss_pred             ceeEEEeeecccccCCCCHhHHHh------------HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCC
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILD------------TIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP   74 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~   74 (203)
                      ...+.||.+.  +++.+||.|++.            .++++.++|+.+||.+.+++++.+|||||||||+|||||+++|+
T Consensus        83 ~ig~VfQ~~~--l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~~~~~~LSGG~~QRvaiAraL~~~P~  160 (240)
T d3dhwc1          83 QIGMIFQHFN--LLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPK  160 (240)
T ss_dssp             HEEECCSSCC--CCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTSSCBSCCCHHHHHHHHHHHHHHTCCS
T ss_pred             cccccccccc--cCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHhhhhccCCC
Confidence            4678888653  467799999763            36789999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEee
Q psy8397          75 IMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTI  153 (203)
Q Consensus        75 vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~  153 (203)
                      +|||||||+|||+.++..+++.|++++++ |.|||++|||++                                      
T Consensus       161 lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~--------------------------------------  202 (240)
T d3dhwc1         161 VLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMD--------------------------------------  202 (240)
T ss_dssp             EEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHH--------------------------------------
T ss_pred             eEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCHH--------------------------------------
Confidence            99999999999999999999999999865 777777777754                                      


Q ss_pred             cCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         154 HQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       154 h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                           ++..+|||+++|++|+|++.|++++++
T Consensus       203 -----~~~~~~dri~vl~~G~iv~~G~~~ei~  229 (240)
T d3dhwc1         203 -----VVKRICDCVAVISNGELIEQDTVSEVF  229 (240)
T ss_dssp             -----HHHHHCSEEEEEETTEEEEEEETTTTT
T ss_pred             -----HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence                 478899999999999999999999985

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=100.00  E-value=2.9e-34  Score=243.50  Aligned_cols=136  Identities=22%  Similarity=0.310  Sum_probs=120.9

Q ss_pred             CCceeEEEeeecccccCCCCHhHHHh----------HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCC
Q psy8397           5 NHGTIWCWQIISAQYSHRISVDDILD----------TIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP   74 (203)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~   74 (203)
                      +....|+||..  .+++.+||.|++.          .++++.++++.+||.+..++++.+|||||||||+|||||+++|+
T Consensus        69 ~r~ig~v~Q~~--~l~~~ltV~enl~~~l~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~  146 (240)
T d2onka1          69 RRGIGFVPQDY--ALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPR  146 (240)
T ss_dssp             TSCCBCCCSSC--CCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred             HcCceeeccch--hhcccchhhHhhhhhhcccCHHHHHHHHHHHHHhcCcHhhhhCChhhCCHHHHHHHHHHHHHhccCC
Confidence            45678888864  3567899999763          35789999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEee
Q psy8397          75 IMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTI  153 (203)
Q Consensus        75 vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~  153 (203)
                      +|||||||+||||.++..+++.|++++++ |.|||++||+++                                      
T Consensus       147 illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~--------------------------------------  188 (240)
T d2onka1         147 LLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI--------------------------------------  188 (240)
T ss_dssp             SBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHH--------------------------------------
T ss_pred             ceEecCccccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHH--------------------------------------
Confidence            99999999999999999999999999865 777777777764                                      


Q ss_pred             cCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         154 HQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       154 h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                           ++..+|||+++|++|++++.|+++++.
T Consensus       189 -----~~~~~adri~vm~~G~ii~~G~~~el~  215 (240)
T d2onka1         189 -----EAAMLADEVAVMLNGRIVEKGKLKELF  215 (240)
T ss_dssp             -----HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred             -----HHHHhCCEEEEEECCEEEEEecHHHHh
Confidence                 478899999999999999999999875

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=100.00  E-value=1.4e-33  Score=237.72  Aligned_cols=134  Identities=24%  Similarity=0.348  Sum_probs=119.1

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH---------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEE
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT---------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMF   77 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLl   77 (203)
                      ...+.||..+  +++.+||.|++..         .+++.++++.+++.+..++++.+|||||||||+|||||+++|++||
T Consensus        73 ~ig~v~Q~~~--l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGG~~QRvaiAraL~~~P~iLl  150 (229)
T d3d31a2          73 DIAFVYQNYS--LFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILL  150 (229)
T ss_dssp             TCEEECTTCC--CCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEE
T ss_pred             cceeeccccc--cCccccHHHHHHHHHhhccccHHHHHHHHHHHhcchhhHhCChhhCCHHHhcchhhhhhhhccCCcee
Confidence            4678888653  5678999998753         5579999999999999999999999999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCc
Q psy8397          78 LDEPTTGLDSNSTNQCVAMLKALAR-GGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQP  156 (203)
Q Consensus        78 LDEPt~gLD~~~~~~i~~~l~~l~~-~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~  156 (203)
                      |||||+||||.++..+++.|+++.+ .|.|||++||+++                                         
T Consensus       151 lDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~-----------------------------------------  189 (229)
T d3d31a2         151 LDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT-----------------------------------------  189 (229)
T ss_dssp             EESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH-----------------------------------------
T ss_pred             ecCCCcCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCHH-----------------------------------------
Confidence            9999999999999999999999975 3777777777754                                         


Q ss_pred             hhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         157 SATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       157 ~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                        ++..+|||+++|++|++++.|+|++++
T Consensus       190 --~~~~~~drv~vm~~G~iv~~g~~~el~  216 (229)
T d3d31a2         190 --EARIMADRIAVVMDGKLIQVGKPEEIF  216 (229)
T ss_dssp             --HHHHHCSEEEEESSSCEEEEECHHHHH
T ss_pred             --HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence              478899999999999999999999885

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=5.8e-34  Score=240.56  Aligned_cols=136  Identities=23%  Similarity=0.356  Sum_probs=90.5

Q ss_pred             CceeEEEeeecccccCCCCHhHHHh------------HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCC
Q psy8397           6 HGTIWCWQIISAQYSHRISVDDILD------------TIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNP   73 (203)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P   73 (203)
                      ....++||..  .+++.+||.|++.            .++++.++++.++|.+..++++.+|||||||||+|||||+++|
T Consensus        72 r~ig~v~Q~~--~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSGGqkQRvaiAraL~~~P  149 (232)
T d2awna2          72 RGVGMVFQSY--ALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEP  149 (232)
T ss_dssp             TCEEEECSSC--CC---------------------CHHHHHHHHHHHHC---------------------CHHHHHHTCC
T ss_pred             ceeeeecccc--ccccchhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCChhhhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence            4578888865  3567789998763            3567999999999999999999999999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEe
Q psy8397          74 PIMFLDEPTTGLDSNSTNQCVAMLKALAR-GGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCT  152 (203)
Q Consensus        74 ~vLlLDEPt~gLD~~~~~~i~~~l~~l~~-~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~  152 (203)
                      ++|||||||+||||.++..+++.|+++.+ .|.|||++||+++                                     
T Consensus       150 ~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~-------------------------------------  192 (232)
T d2awna2         150 SVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-------------------------------------  192 (232)
T ss_dssp             SEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-------------------------------------
T ss_pred             CEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-------------------------------------
Confidence            99999999999999999999999999975 4777777777753                                     


Q ss_pred             ecCchhHHHhhcCEEEEEeCCeEEeeCCcccchh
Q psy8397         153 IHQPSATIFEMVDHLYVIAEGHCVYKGSSANTIP  186 (203)
Q Consensus       153 ~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~~  186 (203)
                            ++..+|||+++|++|++++.|+|++++.
T Consensus       193 ------~a~~~~dri~vm~~G~iv~~G~~~el~~  220 (232)
T d2awna2         193 ------EAMTLADKIVVLDAGRVAQVGKPLELYH  220 (232)
T ss_dssp             ------HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred             ------HHHHhCCEEEEEECCEEEEEeCHHHHHh
Confidence                  4788999999999999999999998863

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=3.4e-33  Score=238.04  Aligned_cols=135  Identities=25%  Similarity=0.394  Sum_probs=119.5

Q ss_pred             ceeEEEeeecccccCCCCHhHHHh-------------------------HHHHHHHHHHHcCCcccccccCCCCCHHHHH
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILD-------------------------TIGLVDDILDTIGLVLSKHTLCGRLSGGQKK   61 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrq   61 (203)
                      |..+.||...  +++.+||.|++.                         ..+++.++++.+++.+..++++++|||||||
T Consensus        80 gi~~v~Q~~~--~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~Q  157 (254)
T d1g6ha_          80 GIVRTFQTPQ--PLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMK  157 (254)
T ss_dssp             TEEECCCCCG--GGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHH
T ss_pred             cCCccCCccc--cCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhccCchhhCCcHHHH
Confidence            4667777553  457789988753                         2357888999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHH
Q psy8397          62 RLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKA  141 (203)
Q Consensus        62 rl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (203)
                      ||+|||||+++|++|||||||+||||.++..+++.|++++++|+|||++||++++                         
T Consensus       158 rv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~-------------------------  212 (254)
T d1g6ha_         158 LVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDI-------------------------  212 (254)
T ss_dssp             HHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCST-------------------------
T ss_pred             HHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHH-------------------------
Confidence            9999999999999999999999999999999999999999889999999998864                         


Q ss_pred             hhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccchh
Q psy8397         142 LARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTIP  186 (203)
Q Consensus       142 ~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~~  186 (203)
                                        +.++||||++|++|+++++|+++++..
T Consensus       213 ------------------~~~~~Drv~vm~~G~iv~~g~~~e~~~  239 (254)
T d1g6ha_         213 ------------------VLNYIDHLYVMFNGQIIAEGRGEEEIK  239 (254)
T ss_dssp             ------------------TGGGCSEEEEEETTEEEEEEESHHHHH
T ss_pred             ------------------HHHhCCEEEEEeCCEEEEEecHHHHhh
Confidence                              678999999999999999999988653

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=100.00  E-value=3.6e-33  Score=236.36  Aligned_cols=135  Identities=21%  Similarity=0.323  Sum_probs=117.0

Q ss_pred             CceeEEEeeecccccCCCCHhHHHh-----------HHHHHHHHHHHc-CCcccccccCCCCCHHHHHHHHHHHHHhcCC
Q psy8397           6 HGTIWCWQIISAQYSHRISVDDILD-----------TIGLVDDILDTI-GLVLSKHTLCGRLSGGQKKRLSIALELIDNP   73 (203)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~v~~~L~~~-~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P   73 (203)
                      .|..+.+|..  .+++.+||.|+..           .++.++++++.+ ++.+..++++++|||||||||+|||||+++|
T Consensus        81 ~gi~~~~q~~--~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSGG~~Qrv~iAraL~~~P  158 (240)
T d1ji0a_          81 MGIALVPEGR--RIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRP  158 (240)
T ss_dssp             TTEEEECSSC--CCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCC
T ss_pred             hcccccCccc--ccCCcccHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhChHHHHhCchhhCCHHHHHHHHHHHHHHhCC
Confidence            3566666643  4567899998753           244566777776 6888999999999999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEee
Q psy8397          74 PIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTI  153 (203)
Q Consensus        74 ~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~  153 (203)
                      ++|||||||+||||.++.++++.|++++++|+|||++||+++                                      
T Consensus       159 ~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~--------------------------------------  200 (240)
T d1ji0a_         159 KLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL--------------------------------------  200 (240)
T ss_dssp             SEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH--------------------------------------
T ss_pred             CEeeecCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH--------------------------------------
Confidence            999999999999999999999999999987888888888864                                      


Q ss_pred             cCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         154 HQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       154 h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                           ++.++|||+++|++|++++.|+++++.
T Consensus       201 -----~~~~~~drv~vl~~G~iv~~g~~~el~  227 (240)
T d1ji0a_         201 -----GALKVAHYGYVLETGQIVLEGKASELL  227 (240)
T ss_dssp             -----HHHHHCSEEEEEETTEEEEEEEHHHHH
T ss_pred             -----HHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence                 478899999999999999999999886

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=6.8e-33  Score=237.00  Aligned_cols=134  Identities=22%  Similarity=0.345  Sum_probs=117.3

Q ss_pred             ceeEEEeeecccccCCCCHhHHHh-------------HHHHHHHHHHHcCCccc-ccccCCCCCHHHHHHHHHHHHHhcC
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILD-------------TIGLVDDILDTIGLVLS-KHTLCGRLSGGQKKRLSIALELIDN   72 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~v~~~L~~~~L~~~-~~~~v~~LSgGqrqrl~iA~aL~~~   72 (203)
                      ...+.||.+  .+++.+||.|+..             .++++.++++.++|.+. .++++.+|||||||||+|||||+.+
T Consensus        90 ~ig~vfQ~~--~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p~~LSGG~~QRv~iAraL~~~  167 (258)
T d1b0ua_          90 RLTMVFQHF--NLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAME  167 (258)
T ss_dssp             HEEEECSSC--CCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTC
T ss_pred             ceEEEEech--hhccchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhhccCcccccHHHHHHHHHHHHHhcC
Confidence            356778765  3567899988643             35678999999999874 5788999999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEe
Q psy8397          73 PPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCT  152 (203)
Q Consensus        73 P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~  152 (203)
                      |++|||||||+|||+.++..+++.|++++++|.|||++|||++                                     
T Consensus       168 P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~-------------------------------------  210 (258)
T d1b0ua_         168 PDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-------------------------------------  210 (258)
T ss_dssp             CSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHH-------------------------------------
T ss_pred             CCEEEeccccccCCHHHHHHHHHhhhhhcccCCceEEEeCCHH-------------------------------------
Confidence            9999999999999999999999999999977888888888864                                     


Q ss_pred             ecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         153 IHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       153 ~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                            ++..+||||++|++|+|++.|+|++++
T Consensus       211 ------~~~~~adri~vm~~G~iv~~g~~~ev~  237 (258)
T d1b0ua_         211 ------FARHVSSHVIFLHQGKIEEEGDPEQVF  237 (258)
T ss_dssp             ------HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred             ------HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence                  478899999999999999999999885

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.98  E-value=2.8e-32  Score=229.93  Aligned_cols=129  Identities=23%  Similarity=0.351  Sum_probs=110.2

Q ss_pred             ceeEEEeeecccccCCCCHhHHHh---------------HHHHHHHHHHHcCCcc-cccccCCCCCHHHHHHHHHHHHHh
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILD---------------TIGLVDDILDTIGLVL-SKHTLCGRLSGGQKKRLSIALELI   70 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~v~~~L~~~~L~~-~~~~~v~~LSgGqrqrl~iA~aL~   70 (203)
                      ...+.||.+.  +++.+||.|+..               ..+++.++|+.++|.+ .+++++.+|||||||||+|||||+
T Consensus        84 ~ig~v~Q~~~--l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~~LSGGqkQRvaIAraL~  161 (230)
T d1l2ta_          84 KIGFVFQQFN--LIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALA  161 (230)
T ss_dssp             HEEEECTTCC--CCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHT
T ss_pred             eEEEEecchh--hCcCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCChhhCCHHHHHHHHHHhhhh
Confidence            3678888653  467799998653               2457788999999976 579999999999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceE
Q psy8397          71 DNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTI  149 (203)
Q Consensus        71 ~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tv  149 (203)
                      ++|++|||||||+|||+.++..+++.|+++.++ |+|||++||+++                                  
T Consensus       162 ~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~----------------------------------  207 (230)
T d1l2ta_         162 NNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN----------------------------------  207 (230)
T ss_dssp             TCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHH----------------------------------
T ss_pred             cCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCHH----------------------------------
Confidence            999999999999999999999999999999864 777777777652                                  


Q ss_pred             EEeecCchhHHHhhcCEEEEEeCCeEEeeCCc
Q psy8397         150 VCTIHQPSATIFEMVDHLYVIAEGHCVYKGSS  181 (203)
Q Consensus       150 i~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~  181 (203)
                               .+ ++|||+++|++|+|+.+|++
T Consensus       208 ---------~a-~~~drv~~m~~G~Iv~~g~~  229 (230)
T d1l2ta_         208 ---------VA-RFGERIIYLKDGEVEREEKL  229 (230)
T ss_dssp             ---------HH-TTSSEEEEEETTEEEEEEEC
T ss_pred             ---------HH-HhCCEEEEEECCEEEEeccC
Confidence                     24 79999999999999999875

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=99.98  E-value=1.9e-32  Score=231.73  Aligned_cols=136  Identities=23%  Similarity=0.262  Sum_probs=119.8

Q ss_pred             CceeEEEeeecccccCCCCHhHHHh------------HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCC
Q psy8397           6 HGTIWCWQIISAQYSHRISVDDILD------------TIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNP   73 (203)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P   73 (203)
                      ....|++|..  .++..+|+.|++.            ..++++++++.++|.+..++++++||||||||++|||||+++|
T Consensus        75 ~~i~~vpq~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lSgG~~qrv~iA~al~~~p  152 (238)
T d1vpla_          75 KLISYLPEEA--GAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNP  152 (238)
T ss_dssp             TTEEEECTTC--CCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCC
T ss_pred             hhEeEeeecc--ccCCCccHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHhhhhhhCCHHHHHHHHHHHHHhcCC
Confidence            3466777753  3567799988763            2456788999999999999999999999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEee
Q psy8397          74 PIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTI  153 (203)
Q Consensus        74 ~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~  153 (203)
                      ++|||||||+||||.++..++++|++++++|+|||++||+++                                      
T Consensus       153 ~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~--------------------------------------  194 (238)
T d1vpla_         153 RLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML--------------------------------------  194 (238)
T ss_dssp             SEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH--------------------------------------
T ss_pred             CEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--------------------------------------
Confidence            999999999999999999999999999988888888888864                                      


Q ss_pred             cCchhHHHhhcCEEEEEeCCeEEeeCCcccchh
Q psy8397         154 HQPSATIFEMVDHLYVIAEGHCVYKGSSANTIP  186 (203)
Q Consensus       154 h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~~  186 (203)
                           ++..+|||+++|++|++++.|+|+++..
T Consensus       195 -----~~~~~~drv~vl~~G~iv~~g~~~el~~  222 (238)
T d1vpla_         195 -----EVEFLCDRIALIHNGTIVETGTVEELKE  222 (238)
T ss_dssp             -----HHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred             -----HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence                 4788999999999999999999998864

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=1.7e-30  Score=218.30  Aligned_cols=122  Identities=21%  Similarity=0.346  Sum_probs=108.8

Q ss_pred             CCCCHhHHHhH-------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhc-------CCCEEEEeCCCCCCC
Q psy8397          21 HRISVDDILDT-------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELID-------NPPIMFLDEPTTGLD   86 (203)
Q Consensus        21 ~~~~~~~~~~~-------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~-------~P~vLlLDEPt~gLD   86 (203)
                      ...++.+++..       .++++++++.+++.+..++++++|||||||||+|||+|++       +|++|||||||+|||
T Consensus        85 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllDEPt~gLD  164 (231)
T d1l7vc_          85 FATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLD  164 (231)
T ss_dssp             SSCBHHHHHHHHCSCTTCHHHHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSCSTTCC
T ss_pred             ccccHHHHhhhccchhhHHHHHHHHHHhcCCHhHhCcChhhcCHHHHHHHHHHHHHHhhCcccCCCCCEEEEcCCCCCCC
Confidence            34566665532       5678899999999999999999999999999999999997       779999999999999


Q ss_pred             HHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCE
Q psy8397          87 SNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDH  166 (203)
Q Consensus        87 ~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~  166 (203)
                      +.++..+++.|++++++|.|||++||+++                                           .+..+|||
T Consensus       165 ~~~~~~i~~~i~~l~~~g~tii~vtHdl~-------------------------------------------~~~~~~dr  201 (231)
T d1l7vc_         165 VAQQSALDKILSALCQQGLAIVMSSHDLN-------------------------------------------HTLRHAHR  201 (231)
T ss_dssp             HHHHHHHHHHHHHHHHTTCEEEECCCCHH-------------------------------------------HHHHHCSB
T ss_pred             HHHHHHHHHHHHHHHhCCCEEEEEeCCHH-------------------------------------------HHHHHCCE
Confidence            99999999999999977888888888764                                           47899999


Q ss_pred             EEEEeCCeEEeeCCcccch
Q psy8397         167 LYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       167 v~vl~~G~i~~~g~~~~~~  185 (203)
                      +++|++|++++.|++++++
T Consensus       202 i~vl~~G~iv~~G~~~ev~  220 (231)
T d1l7vc_         202 AWLLKGGKMLASGRREEVL  220 (231)
T ss_dssp             CCBEETTEECCCSBHHHHS
T ss_pred             EEEEECCEEEEECCHHHHh
Confidence            9999999999999999986

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=6.4e-29  Score=211.27  Aligned_cols=100  Identities=26%  Similarity=0.413  Sum_probs=86.1

Q ss_pred             CCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhh
Q psy8397          43 GLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEM  121 (203)
Q Consensus        43 ~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~  121 (203)
                      ++....+..+.+|||||||||+|||||+.+|+||||||||++||+.+...+++.|+++.++ |+|+|++||+++      
T Consensus       140 g~~~~i~~~~~~LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~------  213 (251)
T d1jj7a_         140 GYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLS------  213 (251)
T ss_dssp             GGGCBCCSSCSSSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHH------
T ss_pred             cchhhHhccCccCChhHceEEEEeeccccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHH------
Confidence            4455566677889999999999999999999999999999999999999999999998753 666666666642      


Q ss_pred             hhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccchh
Q psy8397         122 VDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTIP  186 (203)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~~  186 (203)
                                                            ..+.||+|++|++|+|++.|+++++++
T Consensus       214 --------------------------------------~~~~aDrI~vl~~G~iv~~Gt~~eLl~  240 (251)
T d1jj7a_         214 --------------------------------------LVEQADHILFLEGGAIREGGTHQQLME  240 (251)
T ss_dssp             --------------------------------------HHHTCSEEEEEETTEEEEEECHHHHHH
T ss_pred             --------------------------------------HHHhCCEEEEEECCEEEEECCHHHHHh
Confidence                                                  346799999999999999999999874

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.95  E-value=3.4e-28  Score=206.93  Aligned_cols=98  Identities=33%  Similarity=0.474  Sum_probs=85.9

Q ss_pred             CcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhh
Q psy8397          44 LVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVD  123 (203)
Q Consensus        44 L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~  123 (203)
                      +....+.++.+|||||||||+|||||+.+|++|||||||++||+.+...+++.|+++.+ ++|+|++||+++        
T Consensus       142 l~t~~~~~~~~LSGGqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~--------  212 (253)
T d3b60a1         142 LDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLS--------  212 (253)
T ss_dssp             GGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGG--------
T ss_pred             chhhhcCCCCCcCHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHH--------
Confidence            44445566678999999999999999999999999999999999999999999999864 778888888764        


Q ss_pred             ccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccchh
Q psy8397         124 HLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTIP  186 (203)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~~  186 (203)
                                                          ....||+|++|++|+|++.|++++++.
T Consensus       213 ------------------------------------~~~~~D~v~vl~~G~Iv~~G~~~eLl~  239 (253)
T d3b60a1         213 ------------------------------------TIEQADEIVVVEDGIIVERGTHSELLA  239 (253)
T ss_dssp             ------------------------------------GTTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred             ------------------------------------HHHhCCEEEEEECCEEEEECCHHHHHh
Confidence                                                235799999999999999999999874

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=99.95  E-value=3.1e-28  Score=205.99  Aligned_cols=133  Identities=29%  Similarity=0.327  Sum_probs=102.0

Q ss_pred             CceeEEEeeecccccCCCCHhHHHhH-------HHHHHHHHHHcCCcc-------cccc----cCCCCCHHHHHHHHHHH
Q psy8397           6 HGTIWCWQIISAQYSHRISVDDILDT-------IGLVDDILDTIGLVL-------SKHT----LCGRLSGGQKKRLSIAL   67 (203)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~v~~~L~~~~L~~-------~~~~----~v~~LSgGqrqrl~iA~   67 (203)
                      ....|++|...  ++. -|+.|++..       ...+.+.++..++..       ..++    +..+|||||||||+|||
T Consensus        76 ~~i~~v~Q~~~--lf~-~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iAR  152 (242)
T d1mv5a_          76 SQIGFVSQDSA--IMA-GTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIAR  152 (242)
T ss_dssp             TTCCEECCSSC--CCC-EEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHH
T ss_pred             hheEEEccccc--cCC-cchhhheecccccccchhhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHHHHH
Confidence            44668887532  333 378776421       334455555544432       2223    33469999999999999


Q ss_pred             HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCc
Q psy8397          68 ELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGR  147 (203)
Q Consensus        68 aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  147 (203)
                      ||+.+|+||||||||++||+.+...+++.|+++. +|+|+|++||+++                                
T Consensus       153 al~~~p~ililDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~--------------------------------  199 (242)
T d1mv5a_         153 AFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLS--------------------------------  199 (242)
T ss_dssp             HHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHH--------------------------------
T ss_pred             HHhcCCCEEEecCCccccCHHHHHHHHHHHHHHc-CCCEEEEEECCHH--------------------------------
Confidence            9999999999999999999999999999999986 4788888888753                                


Q ss_pred             eEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccchh
Q psy8397         148 TIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTIP  186 (203)
Q Consensus       148 tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~~  186 (203)
                                 .+ ..||+|++|++|+|++.|++++++.
T Consensus       200 -----------~~-~~~D~i~vl~~G~iv~~G~~~eLl~  226 (242)
T d1mv5a_         200 -----------TI-VDADKIYFIEKGQITGSGKHNELVA  226 (242)
T ss_dssp             -----------HH-HHCSEEEEEETTEECCCSCHHHHHH
T ss_pred             -----------HH-HhCCEEEEEECCEEEEECCHHHHHh
Confidence                       23 5699999999999999999999874

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=1.1e-27  Score=202.75  Aligned_cols=131  Identities=25%  Similarity=0.323  Sum_probs=101.7

Q ss_pred             ceeEEEeeecccccCCCCHhHHHhH------HHHHHHHHHHcCCc-----------ccccccCCCCCHHHHHHHHHHHHH
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILDT------IGLVDDILDTIGLV-----------LSKHTLCGRLSGGQKKRLSIALEL   69 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~v~~~L~~~~L~-----------~~~~~~v~~LSgGqrqrl~iA~aL   69 (203)
                      ...+++|..  .++ ..|+.|++..      .+++.+.++..++.           ...+....+|||||||||+|||||
T Consensus        78 ~i~~v~Q~~--~lf-~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal  154 (241)
T d2pmka1          78 QVGVVLQDN--VLL-NRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARAL  154 (241)
T ss_dssp             HEEEECSSC--CCT-TSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHH
T ss_pred             eEEEEeccc--ccC-CccccccccccCccccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHHHhhhhhh
Confidence            355777643  333 4588887632      33444444444332           233445678999999999999999


Q ss_pred             hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceE
Q psy8397          70 IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTI  149 (203)
Q Consensus        70 ~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tv  149 (203)
                      +.+|++|||||||++||+.+.+.+++.|+++.+ |+|+|++||+++                                  
T Consensus       155 ~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~----------------------------------  199 (241)
T d2pmka1         155 VNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIAHRLS----------------------------------  199 (241)
T ss_dssp             TTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHT-TSEEEEECSSGG----------------------------------
T ss_pred             hcccchhhhhCCccccCHHHHHHHHHHHHHHhC-CCEEEEEECCHH----------------------------------
Confidence            999999999999999999999999999999863 778888888764                                  


Q ss_pred             EEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397         150 VCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI  185 (203)
Q Consensus       150 i~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~  185 (203)
                                ....||+|++|++|+|++.|++++++
T Consensus       200 ----------~~~~~D~i~vl~~G~Iv~~G~~~ell  225 (241)
T d2pmka1         200 ----------TVKNADRIIVMEKGKIVEQGKHKELL  225 (241)
T ss_dssp             ----------GGTTSSEEEEEETTEEEEEECHHHHH
T ss_pred             ----------HHHhCCEEEEEECCEEEEECCHHHHH
Confidence                      23679999999999999999999886

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.94  E-value=2.1e-27  Score=202.46  Aligned_cols=132  Identities=31%  Similarity=0.320  Sum_probs=104.8

Q ss_pred             ceeEEEeeecccccCCCCHhHHHh------HHHHHHHHHHHcCCccc-------ccc----cCCCCCHHHHHHHHHHHHH
Q psy8397           7 GTIWCWQIISAQYSHRISVDDILD------TIGLVDDILDTIGLVLS-------KHT----LCGRLSGGQKKRLSIALEL   69 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~v~~~L~~~~L~~~-------~~~----~v~~LSgGqrqrl~iA~aL   69 (203)
                      ...|++|..  .+ ...|+.|++.      ..+++.++++..++.+.       .++    ...+||||||||++|||||
T Consensus        93 ~i~~v~Q~~--~l-f~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal  169 (255)
T d2hyda1          93 QIGLVQQDN--IL-FSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIF  169 (255)
T ss_dssp             TEEEECSSC--CC-CSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHH
T ss_pred             eeeeeeccc--cC-CCCCHHHHHhccCcCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHHHHHHHHHH
Confidence            456777643  33 3468988763      24566777777766432       233    3456999999999999999


Q ss_pred             hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceE
Q psy8397          70 IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTI  149 (203)
Q Consensus        70 ~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tv  149 (203)
                      +.+|++|||||||++||+.+...+++.|+++.+ ++|+|++||+++                                  
T Consensus       170 ~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~-~~TvI~itH~~~----------------------------------  214 (255)
T d2hyda1         170 LNNPPILILDEATSALDLESESIIQEALDVLSK-DRTTLIVAHRLS----------------------------------  214 (255)
T ss_dssp             HHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSSGG----------------------------------
T ss_pred             hcCCCEEEEeCccccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH----------------------------------
Confidence            999999999999999999999999999999863 677778887764                                  


Q ss_pred             EEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccchh
Q psy8397         150 VCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTIP  186 (203)
Q Consensus       150 i~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~~  186 (203)
                                ....||+|++|++|+|++.|++++++.
T Consensus       215 ----------~~~~~D~ii~l~~G~iv~~G~~~eLl~  241 (255)
T d2hyda1         215 ----------TITHADKIVVIENGHIVETGTHRELIA  241 (255)
T ss_dssp             ----------GTTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred             ----------HHHhCCEEEEEECCEEEEECCHHHHHh
Confidence                      246799999999999999999999864

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=1e-25  Score=194.07  Aligned_cols=94  Identities=19%  Similarity=0.264  Sum_probs=78.0

Q ss_pred             cccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccC
Q psy8397          49 HTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLD  128 (203)
Q Consensus        49 ~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~  128 (203)
                      +....+|||||||||+|||||+++|++|||||||++||+.+...+++.+......|+|+|++||++              
T Consensus       153 ~~~~~~LSgGqkQRv~lARaL~~~p~illLDEPts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~--------------  218 (281)
T d1r0wa_         153 GEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKM--------------  218 (281)
T ss_dssp             CTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCH--------------
T ss_pred             hhhccCCCHHHHHHHHHHHHHHhCccchhhcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEechH--------------
Confidence            344557999999999999999999999999999999999999999876444343456666666664              


Q ss_pred             CCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccchh
Q psy8397         129 SNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTIP  186 (203)
Q Consensus       129 ~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~~  186 (203)
                                                  +  ....||+|++|++|++++.|+++++..
T Consensus       219 ----------------------------~--~l~~aDrI~vl~~G~i~~~Gt~~eL~~  246 (281)
T d1r0wa_         219 ----------------------------E--HLRKADKILILHQGSSYFYGTFSELQS  246 (281)
T ss_dssp             ----------------------------H--HHHTCSEEEEEETTEEEEEECHHHHHH
T ss_pred             ----------------------------H--HHHhCCEEEEEECCEEEEECCHHHHhc
Confidence                                        2  346899999999999999999999863

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.87  E-value=1.4e-22  Score=166.24  Aligned_cols=94  Identities=24%  Similarity=0.428  Sum_probs=76.7

Q ss_pred             ccCCCCHhHHHhH----------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Q psy8397          19 YSHRISVDDILDT----------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSN   88 (203)
Q Consensus        19 ~~~~~~~~~~~~~----------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~   88 (203)
                      ++..+++.+++..          ++.+.+.++.+++.+ .++++++||||||||++|||||+.+|+++||||||+|||+.
T Consensus        81 ~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~LSgG~~qrv~ia~al~~~~~llllDEPt~gLD~~  159 (200)
T d1sgwa_          81 VPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLD-LKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDED  159 (200)
T ss_dssp             CCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCC-TTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTT
T ss_pred             CCCCcCHHHHHHHHHHhcCCccCHHHHHHHHHHcCCcc-cccccCcCCCcHHHHHHHHHHHhcCCCEEEEcCcccccCHH
Confidence            4567899987643          346677888888765 45678999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhC-CCeEEEEecC
Q psy8397          89 STNQCVAMLKALARG-GRTIVCTIHQ  113 (203)
Q Consensus        89 ~~~~i~~~l~~l~~~-g~tvi~~tH~  113 (203)
                      ++..+++.|.++.++ |.+||.++|+
T Consensus       160 ~~~~i~~~l~~~~~~~~~~ii~~~~~  185 (200)
T d1sgwa_         160 SKHKVLKSILEILKEKGIVIISSREE  185 (200)
T ss_dssp             THHHHHHHHHHHHHHHSEEEEEESSC
T ss_pred             HHHHHHHHHHHHHhCCCEEEEEEech
Confidence            999999999998754 4344444343

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.15  E-value=6.4e-11  Score=101.46  Aligned_cols=65  Identities=22%  Similarity=0.289  Sum_probs=50.4

Q ss_pred             ccCCCCCHHHHHHHHHHHHH----hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCC
Q psy8397          50 TLCGRLSGGQKKRLSIALEL----IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQP  114 (203)
Q Consensus        50 ~~v~~LSgGqrqrl~iA~aL----~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~  114 (203)
                      .+...||||||.++++|..+    ..++++++||||+++||+..+..+.+.|+++...+.-+|+|||++
T Consensus       328 ~~~~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~  396 (427)
T d1w1wa_         328 KDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN  396 (427)
T ss_dssp             CCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH
T ss_pred             hhhhhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCH
Confidence            34467899999998876543    467789999999999999999999999998864344455555553

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.54  E-value=8.9e-08  Score=72.66  Aligned_cols=60  Identities=10%  Similarity=0.027  Sum_probs=49.4

Q ss_pred             CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCC
Q psy8397          54 RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPS  115 (203)
Q Consensus        54 ~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~  115 (203)
                      .+|+|++++.++++++..+|+++++|||.  .+......+++.+.++.++ +.|+|+++|+..
T Consensus        81 ~~~~~~~~~~~l~~~~~~~~~vlllDE~~--~~~~~~~~~~~~l~~~l~~~~~~il~~~h~~~  141 (178)
T d1ye8a1          81 EELAIPILERAYREAKKDRRKVIIIDEIG--KMELFSKKFRDLVRQIMHDPNVNVVATIPIRD  141 (178)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCEEEECCCS--TTGGGCHHHHHHHHHHHTCTTSEEEEECCSSC
T ss_pred             hhhhhhhHHHHHHHHHhcCCCceeecCCC--ccchhhHHHHHHHHHHhccCCCEEEEEEccHH
Confidence            57999999999999999999999999984  3344456677777776554 899999999864

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.51  E-value=2.7e-07  Score=75.97  Aligned_cols=65  Identities=26%  Similarity=0.360  Sum_probs=52.1

Q ss_pred             ccCCCCCHHHHHHHHHHHH----HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q psy8397          50 TLCGRLSGGQKKRLSIALE----LIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPS  115 (203)
Q Consensus        50 ~~v~~LSgGqrqrl~iA~a----L~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~  115 (203)
                      .....+|+|+|+...++..    ....|.++++|||-++|+|...+.+.+.|++..+ ..-||+|||.+.
T Consensus       215 ~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~-~~QviitTHsp~  283 (308)
T d1e69a_         215 QKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK-HTQFIVITHNKI  283 (308)
T ss_dssp             CBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT-TSEEEEECCCTT
T ss_pred             chhhhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHH
Confidence            3456799999998877665    3457789999999999999999999999998763 456666666653

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=95.24  E-value=0.025  Score=44.92  Aligned_cols=58  Identities=16%  Similarity=0.157  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCeEEEEecCCC
Q psy8397          58 GQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVA-MLKALARGGRTIVCTIHQPS  115 (203)
Q Consensus        58 Gqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~-~l~~l~~~g~tvi~~tH~~~  115 (203)
                      .|-+++.-..-.+.+..++|+||+..|=++.....+.. ++..|.+.+..++++||+.+
T Consensus       100 ~el~~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~e  158 (224)
T d1ewqa2         100 VEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFE  158 (224)
T ss_dssp             HHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHH
T ss_pred             HhHHHHHHHhccCCCCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeechh
Confidence            34555555555567778999999999999998887664 67778877999999999853

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.16  E-value=0.06  Score=42.80  Aligned_cols=58  Identities=14%  Similarity=0.072  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhC-CCeEEEEecCCC
Q psy8397          58 GQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV-AMLKALARG-GRTIVCTIHQPS  115 (203)
Q Consensus        58 Gqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~-~~l~~l~~~-g~tvi~~tH~~~  115 (203)
                      .+-+++.-..-.+.+..++|+||+..|=++.....+. ..+..+... +..+|++||..+
T Consensus       106 ~E~~~~~~il~~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~  165 (234)
T d1wb9a2         106 VEMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFE  165 (234)
T ss_dssp             HHHHHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGG
T ss_pred             HHHHHHHHHHHhcccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchHH
Confidence            3455555444456777899999999999999998875 467778654 678999999864

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.28  E-value=0.0036  Score=50.59  Aligned_cols=26  Identities=8%  Similarity=-0.026  Sum_probs=18.1

Q ss_pred             cccccCCCCCHHHHHHH-HHHHHHhcC
Q psy8397          47 SKHTLCGRLSGGQKKRL-SIALELIDN   72 (203)
Q Consensus        47 ~~~~~v~~LSgGqrqrl-~iA~aL~~~   72 (203)
                      .+|.|...|--..++.+ .+-+.+..+
T Consensus       153 llDEPts~LD~~~~~~i~~~l~~l~~~  179 (232)
T d2awna2         153 LLDEPLSNLDAALRVQMRIEISRLHKR  179 (232)
T ss_dssp             EEESTTTTSCHHHHHHHHHHHHHHHHH
T ss_pred             EEcCCCCCCCHHHHHHHHHHHHHHHHh
Confidence            36888889987776655 566676553

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=93.07  E-value=0.0047  Score=49.82  Aligned_cols=25  Identities=8%  Similarity=-0.056  Sum_probs=15.1

Q ss_pred             cccccCCCCCHHHHHHH-HHHHHHhc
Q psy8397          47 SKHTLCGRLSGGQKKRL-SIALELID   71 (203)
Q Consensus        47 ~~~~~v~~LSgGqrqrl-~iA~aL~~   71 (203)
                      ..|.|...|--..++.+ .+-+-+..
T Consensus       150 llDEPts~LD~~~~~~i~~~l~~l~~  175 (229)
T d3d31a2         150 LLDEPLSALDPRTQENAREMLSVLHK  175 (229)
T ss_dssp             EEESSSTTSCHHHHHHHHHHHHHHHH
T ss_pred             eecCCCcCCCHHHHHHHHHHHHHHHh
Confidence            35888888876655443 44555544